1be1d678aSKris Buschelman 22593348eSBarry Smith /* 3b6490206SBarry Smith Defines the basic matrix operations for the BAIJ (compressed row) 42593348eSBarry Smith matrix storage format. 52593348eSBarry Smith */ 6c6db04a5SJed Brown #include <../src/mat/impls/baij/seq/baij.h> /*I "petscmat.h" I*/ 7c6db04a5SJed Brown #include <petscblaslapack.h> 8af0996ceSBarry Smith #include <petsc/private/kernels/blockinvert.h> 9af0996ceSBarry Smith #include <petsc/private/kernels/blockmatmult.h> 1043516a2dSKris Buschelman 1143516a2dSKris Buschelman #undef __FUNCT__ 12b01c7715SBarry Smith #define __FUNCT__ "MatInvertBlockDiagonal_SeqBAIJ" 13713ccfa9SJed Brown PetscErrorCode MatInvertBlockDiagonal_SeqBAIJ(Mat A,const PetscScalar **values) 14b01c7715SBarry Smith { 15b01c7715SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*) A->data; 166849ba73SBarry Smith PetscErrorCode ierr; 17de80f912SBarry Smith PetscInt *diag_offset,i,bs = A->rmap->bs,mbs = a->mbs,ipvt[5],bs2 = bs*bs,*v_pivots; 18de80f912SBarry Smith MatScalar *v = a->a,*odiag,*diag,*mdiag,work[25],*v_work; 1962bba022SBarry Smith PetscReal shift = 0.0; 20*a455e926SHong Zhang PetscBool allowzeropivot,zeropivotdetected; 21b01c7715SBarry Smith 22b01c7715SBarry Smith PetscFunctionBegin; 23*a455e926SHong Zhang allowzeropivot = PetscNot(A->erroriffailure); 24*a455e926SHong Zhang 259797317bSBarry Smith if (a->idiagvalid) { 269797317bSBarry Smith if (values) *values = a->idiag; 279797317bSBarry Smith PetscFunctionReturn(0); 289797317bSBarry Smith } 29b01c7715SBarry Smith ierr = MatMarkDiagonal_SeqBAIJ(A);CHKERRQ(ierr); 30b01c7715SBarry Smith diag_offset = a->diag; 31b01c7715SBarry Smith if (!a->idiag) { 32785e854fSJed Brown ierr = PetscMalloc1(2*bs2*mbs,&a->idiag);CHKERRQ(ierr); 333bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)A,2*bs2*mbs*sizeof(PetscScalar));CHKERRQ(ierr); 34b01c7715SBarry Smith } 35b01c7715SBarry Smith diag = a->idiag; 36de80f912SBarry Smith mdiag = a->idiag+bs2*mbs; 37bbead8a2SBarry Smith if (values) *values = a->idiag; 38b01c7715SBarry Smith /* factor and invert each block */ 39521d7252SBarry Smith switch (bs) { 40ab040260SJed Brown case 1: 41ab040260SJed Brown for (i=0; i<mbs; i++) { 42ab040260SJed Brown odiag = v + 1*diag_offset[i]; 43ab040260SJed Brown diag[0] = odiag[0]; 44ab040260SJed Brown mdiag[0] = odiag[0]; 45d4a378daSJed Brown diag[0] = (PetscScalar)1.0 / (diag[0] + shift); 46ab040260SJed Brown diag += 1; 47ab040260SJed Brown mdiag += 1; 48ab040260SJed Brown } 49ab040260SJed Brown break; 50b01c7715SBarry Smith case 2: 51b01c7715SBarry Smith for (i=0; i<mbs; i++) { 52b01c7715SBarry Smith odiag = v + 4*diag_offset[i]; 53b01c7715SBarry Smith diag[0] = odiag[0]; diag[1] = odiag[1]; diag[2] = odiag[2]; diag[3] = odiag[3]; 54b01c7715SBarry Smith mdiag[0] = odiag[0]; mdiag[1] = odiag[1]; mdiag[2] = odiag[2]; mdiag[3] = odiag[3]; 55*a455e926SHong Zhang ierr = PetscKernel_A_gets_inverse_A_2(diag,shift,allowzeropivot,&zeropivotdetected);CHKERRQ(ierr); 562e92ee13SHong Zhang if (zeropivotdetected) break; 57b01c7715SBarry Smith diag += 4; 58b01c7715SBarry Smith mdiag += 4; 59b01c7715SBarry Smith } 60b01c7715SBarry Smith break; 61b01c7715SBarry Smith case 3: 62b01c7715SBarry Smith for (i=0; i<mbs; i++) { 63b01c7715SBarry Smith odiag = v + 9*diag_offset[i]; 64b01c7715SBarry Smith diag[0] = odiag[0]; diag[1] = odiag[1]; diag[2] = odiag[2]; diag[3] = odiag[3]; 65b01c7715SBarry Smith diag[4] = odiag[4]; diag[5] = odiag[5]; diag[6] = odiag[6]; diag[7] = odiag[7]; 66b01c7715SBarry Smith diag[8] = odiag[8]; 67b01c7715SBarry Smith mdiag[0] = odiag[0]; mdiag[1] = odiag[1]; mdiag[2] = odiag[2]; mdiag[3] = odiag[3]; 68b01c7715SBarry Smith mdiag[4] = odiag[4]; mdiag[5] = odiag[5]; mdiag[6] = odiag[6]; mdiag[7] = odiag[7]; 69b01c7715SBarry Smith mdiag[8] = odiag[8]; 70*a455e926SHong Zhang ierr = PetscKernel_A_gets_inverse_A_3(diag,shift,allowzeropivot,&zeropivotdetected);CHKERRQ(ierr); 71d7806518SHong Zhang if (zeropivotdetected) break; 72b01c7715SBarry Smith diag += 9; 73b01c7715SBarry Smith mdiag += 9; 74b01c7715SBarry Smith } 75b01c7715SBarry Smith break; 76b01c7715SBarry Smith case 4: 77b01c7715SBarry Smith for (i=0; i<mbs; i++) { 78b01c7715SBarry Smith odiag = v + 16*diag_offset[i]; 79b01c7715SBarry Smith ierr = PetscMemcpy(diag,odiag,16*sizeof(PetscScalar));CHKERRQ(ierr); 80b01c7715SBarry Smith ierr = PetscMemcpy(mdiag,odiag,16*sizeof(PetscScalar));CHKERRQ(ierr); 81*a455e926SHong Zhang ierr = PetscKernel_A_gets_inverse_A_4(diag,shift,allowzeropivot,&zeropivotdetected);CHKERRQ(ierr); 822e92ee13SHong Zhang if (zeropivotdetected) break; 83b01c7715SBarry Smith diag += 16; 84b01c7715SBarry Smith mdiag += 16; 85b01c7715SBarry Smith } 86b01c7715SBarry Smith break; 87b01c7715SBarry Smith case 5: 88b01c7715SBarry Smith for (i=0; i<mbs; i++) { 89b01c7715SBarry Smith odiag = v + 25*diag_offset[i]; 90b01c7715SBarry Smith ierr = PetscMemcpy(diag,odiag,25*sizeof(PetscScalar));CHKERRQ(ierr); 91b01c7715SBarry Smith ierr = PetscMemcpy(mdiag,odiag,25*sizeof(PetscScalar));CHKERRQ(ierr); 92*a455e926SHong Zhang ierr = PetscKernel_A_gets_inverse_A_5(diag,ipvt,work,shift,allowzeropivot,&zeropivotdetected);CHKERRQ(ierr); 932e92ee13SHong Zhang if (zeropivotdetected) break; 94b01c7715SBarry Smith diag += 25; 95b01c7715SBarry Smith mdiag += 25; 96b01c7715SBarry Smith } 97b01c7715SBarry Smith break; 98d49b2adcSBarry Smith case 6: 99d49b2adcSBarry Smith for (i=0; i<mbs; i++) { 100d49b2adcSBarry Smith odiag = v + 36*diag_offset[i]; 101d49b2adcSBarry Smith ierr = PetscMemcpy(diag,odiag,36*sizeof(PetscScalar));CHKERRQ(ierr); 102d49b2adcSBarry Smith ierr = PetscMemcpy(mdiag,odiag,36*sizeof(PetscScalar));CHKERRQ(ierr); 103*a455e926SHong Zhang ierr = PetscKernel_A_gets_inverse_A_6(diag,shift,allowzeropivot,&zeropivotdetected);CHKERRQ(ierr); 1042e92ee13SHong Zhang if (zeropivotdetected) break; 105d49b2adcSBarry Smith diag += 36; 106d49b2adcSBarry Smith mdiag += 36; 107d49b2adcSBarry Smith } 108d49b2adcSBarry Smith break; 109de80f912SBarry Smith case 7: 110de80f912SBarry Smith for (i=0; i<mbs; i++) { 111de80f912SBarry Smith odiag = v + 49*diag_offset[i]; 112de80f912SBarry Smith ierr = PetscMemcpy(diag,odiag,49*sizeof(PetscScalar));CHKERRQ(ierr); 113de80f912SBarry Smith ierr = PetscMemcpy(mdiag,odiag,49*sizeof(PetscScalar));CHKERRQ(ierr); 114*a455e926SHong Zhang ierr = PetscKernel_A_gets_inverse_A_7(diag,shift,allowzeropivot,&zeropivotdetected);CHKERRQ(ierr); 1152e92ee13SHong Zhang if (zeropivotdetected) break; 116de80f912SBarry Smith diag += 49; 117de80f912SBarry Smith mdiag += 49; 118de80f912SBarry Smith } 119de80f912SBarry Smith break; 120b01c7715SBarry Smith default: 121dcca6d9dSJed Brown ierr = PetscMalloc2(bs,&v_work,bs,&v_pivots);CHKERRQ(ierr); 122de80f912SBarry Smith for (i=0; i<mbs; i++) { 123de80f912SBarry Smith odiag = v + bs2*diag_offset[i]; 124de80f912SBarry Smith ierr = PetscMemcpy(diag,odiag,bs2*sizeof(PetscScalar));CHKERRQ(ierr); 125de80f912SBarry Smith ierr = PetscMemcpy(mdiag,odiag,bs2*sizeof(PetscScalar));CHKERRQ(ierr); 12696b95a6bSBarry Smith ierr = PetscKernel_A_gets_inverse_A(bs,diag,v_pivots,v_work);CHKERRQ(ierr); 127de80f912SBarry Smith diag += bs2; 128de80f912SBarry Smith mdiag += bs2; 129de80f912SBarry Smith } 130de80f912SBarry Smith ierr = PetscFree2(v_work,v_pivots);CHKERRQ(ierr); 131b01c7715SBarry Smith } 132b01c7715SBarry Smith a->idiagvalid = PETSC_TRUE; 133d7806518SHong Zhang if (zeropivotdetected) { 134d7806518SHong Zhang A->errortype = MAT_FACTOR_NUMERIC_ZEROPIVOT; 135d7806518SHong Zhang } 136b01c7715SBarry Smith PetscFunctionReturn(0); 137b01c7715SBarry Smith } 138b01c7715SBarry Smith 139b01c7715SBarry Smith #undef __FUNCT__ 140e48d15efSToby Isaac #define __FUNCT__ "MatSOR_SeqBAIJ" 141e48d15efSToby Isaac PetscErrorCode MatSOR_SeqBAIJ(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 1426d3beeddSMatthew Knepley { 1436d3beeddSMatthew Knepley Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 144e48d15efSToby Isaac PetscScalar *x,*work,*w,*workt,*t; 145e48d15efSToby Isaac const MatScalar *v,*aa = a->a, *idiag; 146e48d15efSToby Isaac const PetscScalar *b,*xb; 1475455b99fSToby Isaac PetscScalar s[7], xw[7]={0}; /* avoid some compilers thinking xw is uninitialized */ 1486d3beeddSMatthew Knepley PetscErrorCode ierr; 149e48d15efSToby Isaac PetscInt m = a->mbs,i,i2,nz,bs = A->rmap->bs,bs2 = bs*bs,k,j,idx,it; 150c1ac3661SBarry Smith const PetscInt *diag,*ai = a->i,*aj = a->j,*vi; 151b01c7715SBarry Smith 152b01c7715SBarry Smith PetscFunctionBegin; 153422a814eSBarry Smith if (fshift == -1.0) fshift = 0.0; /* negative fshift indicates do not error on zero diagonal; this code never errors on zero diagonal */ 154b01c7715SBarry Smith its = its*lits; 155e32f2f54SBarry Smith if (flag & SOR_EISENSTAT) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support yet for Eisenstat"); 156e32f2f54SBarry Smith if (its <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 157e32f2f54SBarry Smith if (fshift) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Sorry, no support for diagonal shift"); 158e32f2f54SBarry Smith if (omega != 1.0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor"); 159e32f2f54SBarry Smith if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts"); 160b01c7715SBarry Smith 1610298fd71SBarry Smith if (!a->idiagvalid) {ierr = MatInvertBlockDiagonal(A,NULL);CHKERRQ(ierr);} 162b01c7715SBarry Smith 163b2ec919aSToby Isaac if (!m) PetscFunctionReturn(0); 164b01c7715SBarry Smith diag = a->diag; 165b01c7715SBarry Smith idiag = a->idiag; 166de80f912SBarry Smith k = PetscMax(A->rmap->n,A->cmap->n); 167e48d15efSToby Isaac if (!a->mult_work) { 168f361c04dSBarry Smith ierr = PetscMalloc1(k+1,&a->mult_work);CHKERRQ(ierr); 169de80f912SBarry Smith } 1703475c22fSBarry Smith if (!a->sor_workt) { 171f361c04dSBarry Smith ierr = PetscMalloc1(k,&a->sor_workt);CHKERRQ(ierr); 172de80f912SBarry Smith } 173de80f912SBarry Smith if (!a->sor_work) { 174785e854fSJed Brown ierr = PetscMalloc1(bs,&a->sor_work);CHKERRQ(ierr); 175de80f912SBarry Smith } 1763475c22fSBarry Smith work = a->mult_work; 1773475c22fSBarry Smith t = a->sor_workt; 178de80f912SBarry Smith w = a->sor_work; 179de80f912SBarry Smith 180de80f912SBarry Smith ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 181de80f912SBarry Smith ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr); 182de80f912SBarry Smith 183de80f912SBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 184de80f912SBarry Smith if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) { 185e48d15efSToby Isaac switch (bs) { 186e48d15efSToby Isaac case 1: 187e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_1(x,idiag,b); 188e48d15efSToby Isaac t[0] = b[0]; 189e48d15efSToby Isaac i2 = 1; 190e48d15efSToby Isaac idiag += 1; 191e48d15efSToby Isaac for (i=1; i<m; i++) { 192e48d15efSToby Isaac v = aa + ai[i]; 193e48d15efSToby Isaac vi = aj + ai[i]; 194e48d15efSToby Isaac nz = diag[i] - ai[i]; 195e48d15efSToby Isaac s[0] = b[i2]; 196e48d15efSToby Isaac for (j=0; j<nz; j++) { 197e48d15efSToby Isaac xw[0] = x[vi[j]]; 198e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_1(s,(v+j),xw); 199e48d15efSToby Isaac } 200e48d15efSToby Isaac t[i2] = s[0]; 201e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_1(xw,idiag,s); 202e48d15efSToby Isaac x[i2] = xw[0]; 203e48d15efSToby Isaac idiag += 1; 204e48d15efSToby Isaac i2 += 1; 205e48d15efSToby Isaac } 206e48d15efSToby Isaac break; 207e48d15efSToby Isaac case 2: 208e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_2(x,idiag,b); 209e48d15efSToby Isaac t[0] = b[0]; t[1] = b[1]; 210e48d15efSToby Isaac i2 = 2; 211e48d15efSToby Isaac idiag += 4; 212e48d15efSToby Isaac for (i=1; i<m; i++) { 213e48d15efSToby Isaac v = aa + 4*ai[i]; 214e48d15efSToby Isaac vi = aj + ai[i]; 215e48d15efSToby Isaac nz = diag[i] - ai[i]; 216e48d15efSToby Isaac s[0] = b[i2]; s[1] = b[i2+1]; 217e48d15efSToby Isaac for (j=0; j<nz; j++) { 218e48d15efSToby Isaac idx = 2*vi[j]; 219e48d15efSToby Isaac it = 4*j; 220e48d15efSToby Isaac xw[0] = x[idx]; xw[1] = x[1+idx]; 221e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_2(s,(v+it),xw); 222e48d15efSToby Isaac } 223e48d15efSToby Isaac t[i2] = s[0]; t[i2+1] = s[1]; 224e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_2(xw,idiag,s); 225e48d15efSToby Isaac x[i2] = xw[0]; x[i2+1] = xw[1]; 226e48d15efSToby Isaac idiag += 4; 227e48d15efSToby Isaac i2 += 2; 228e48d15efSToby Isaac } 229e48d15efSToby Isaac break; 230e48d15efSToby Isaac case 3: 231e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_3(x,idiag,b); 232e48d15efSToby Isaac t[0] = b[0]; t[1] = b[1]; t[2] = b[2]; 233e48d15efSToby Isaac i2 = 3; 234e48d15efSToby Isaac idiag += 9; 235e48d15efSToby Isaac for (i=1; i<m; i++) { 236e48d15efSToby Isaac v = aa + 9*ai[i]; 237e48d15efSToby Isaac vi = aj + ai[i]; 238e48d15efSToby Isaac nz = diag[i] - ai[i]; 239e48d15efSToby Isaac s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2]; 240e48d15efSToby Isaac while (nz--) { 241e48d15efSToby Isaac idx = 3*(*vi++); 242e48d15efSToby Isaac xw[0] = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; 243e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_3(s,v,xw); 244e48d15efSToby Isaac v += 9; 245e48d15efSToby Isaac } 246e48d15efSToby Isaac t[i2] = s[0]; t[i2+1] = s[1]; t[i2+2] = s[2]; 247e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_3(xw,idiag,s); 248e48d15efSToby Isaac x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2]; 249e48d15efSToby Isaac idiag += 9; 250e48d15efSToby Isaac i2 += 3; 251e48d15efSToby Isaac } 252e48d15efSToby Isaac break; 253e48d15efSToby Isaac case 4: 254e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_4(x,idiag,b); 255e48d15efSToby Isaac t[0] = b[0]; t[1] = b[1]; t[2] = b[2]; t[3] = b[3]; 256e48d15efSToby Isaac i2 = 4; 257e48d15efSToby Isaac idiag += 16; 258e48d15efSToby Isaac for (i=1; i<m; i++) { 259e48d15efSToby Isaac v = aa + 16*ai[i]; 260e48d15efSToby Isaac vi = aj + ai[i]; 261e48d15efSToby Isaac nz = diag[i] - ai[i]; 262e48d15efSToby Isaac s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2]; s[3] = b[i2+3]; 263e48d15efSToby Isaac while (nz--) { 264e48d15efSToby Isaac idx = 4*(*vi++); 265e48d15efSToby Isaac xw[0] = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; xw[3] = x[3+idx]; 266e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_4(s,v,xw); 267e48d15efSToby Isaac v += 16; 268e48d15efSToby Isaac } 269e48d15efSToby Isaac t[i2] = s[0]; t[i2+1] = s[1]; t[i2+2] = s[2]; t[i2 + 3] = s[3]; 270e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_4(xw,idiag,s); 271e48d15efSToby Isaac x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2]; x[i2+3] = xw[3]; 272e48d15efSToby Isaac idiag += 16; 273e48d15efSToby Isaac i2 += 4; 274e48d15efSToby Isaac } 275e48d15efSToby Isaac break; 276e48d15efSToby Isaac case 5: 277e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_5(x,idiag,b); 278e48d15efSToby Isaac t[0] = b[0]; t[1] = b[1]; t[2] = b[2]; t[3] = b[3]; t[4] = b[4]; 279e48d15efSToby Isaac i2 = 5; 280e48d15efSToby Isaac idiag += 25; 281e48d15efSToby Isaac for (i=1; i<m; i++) { 282e48d15efSToby Isaac v = aa + 25*ai[i]; 283e48d15efSToby Isaac vi = aj + ai[i]; 284e48d15efSToby Isaac nz = diag[i] - ai[i]; 285e48d15efSToby Isaac s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2]; s[3] = b[i2+3]; s[4] = b[i2+4]; 286e48d15efSToby Isaac while (nz--) { 287e48d15efSToby Isaac idx = 5*(*vi++); 288e48d15efSToby Isaac xw[0] = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; xw[3] = x[3+idx]; xw[4] = x[4+idx]; 289e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_5(s,v,xw); 290e48d15efSToby Isaac v += 25; 291e48d15efSToby Isaac } 292e48d15efSToby Isaac t[i2] = s[0]; t[i2+1] = s[1]; t[i2+2] = s[2]; t[i2+3] = s[3]; t[i2+4] = s[4]; 293e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_5(xw,idiag,s); 294e48d15efSToby Isaac x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2]; x[i2+3] = xw[3]; x[i2+4] = xw[4]; 295e48d15efSToby Isaac idiag += 25; 296e48d15efSToby Isaac i2 += 5; 297e48d15efSToby Isaac } 298e48d15efSToby Isaac break; 299e48d15efSToby Isaac case 6: 300e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_6(x,idiag,b); 301e48d15efSToby Isaac t[0] = b[0]; t[1] = b[1]; t[2] = b[2]; t[3] = b[3]; t[4] = b[4]; t[5] = b[5]; 302e48d15efSToby Isaac i2 = 6; 303e48d15efSToby Isaac idiag += 36; 304e48d15efSToby Isaac for (i=1; i<m; i++) { 305e48d15efSToby Isaac v = aa + 36*ai[i]; 306e48d15efSToby Isaac vi = aj + ai[i]; 307e48d15efSToby Isaac nz = diag[i] - ai[i]; 308e48d15efSToby Isaac s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2]; s[3] = b[i2+3]; s[4] = b[i2+4]; s[5] = b[i2+5]; 309e48d15efSToby Isaac while (nz--) { 310e48d15efSToby Isaac idx = 6*(*vi++); 311e48d15efSToby Isaac xw[0] = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; 312e48d15efSToby Isaac xw[3] = x[3+idx]; xw[4] = x[4+idx]; xw[5] = x[5+idx]; 313e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_6(s,v,xw); 314e48d15efSToby Isaac v += 36; 315e48d15efSToby Isaac } 316e48d15efSToby Isaac t[i2] = s[0]; t[i2+1] = s[1]; t[i2+2] = s[2]; 317e48d15efSToby Isaac t[i2+3] = s[3]; t[i2+4] = s[4]; t[i2+5] = s[5]; 318e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_6(xw,idiag,s); 319e48d15efSToby Isaac x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2]; x[i2+3] = xw[3]; x[i2+4] = xw[4]; x[i2+5] = xw[5]; 320e48d15efSToby Isaac idiag += 36; 321e48d15efSToby Isaac i2 += 6; 322e48d15efSToby Isaac } 323e48d15efSToby Isaac break; 324e48d15efSToby Isaac case 7: 325e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_7(x,idiag,b); 326e48d15efSToby Isaac t[0] = b[0]; t[1] = b[1]; t[2] = b[2]; 327e48d15efSToby Isaac t[3] = b[3]; t[4] = b[4]; t[5] = b[5]; t[6] = b[6]; 328e48d15efSToby Isaac i2 = 7; 329e48d15efSToby Isaac idiag += 49; 330e48d15efSToby Isaac for (i=1; i<m; i++) { 331e48d15efSToby Isaac v = aa + 49*ai[i]; 332e48d15efSToby Isaac vi = aj + ai[i]; 333e48d15efSToby Isaac nz = diag[i] - ai[i]; 334e48d15efSToby Isaac s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2]; 335e48d15efSToby Isaac s[3] = b[i2+3]; s[4] = b[i2+4]; s[5] = b[i2+5]; s[6] = b[i2+6]; 336e48d15efSToby Isaac while (nz--) { 337e48d15efSToby Isaac idx = 7*(*vi++); 338e48d15efSToby Isaac xw[0] = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; 339e48d15efSToby Isaac xw[3] = x[3+idx]; xw[4] = x[4+idx]; xw[5] = x[5+idx]; xw[6] = x[6+idx]; 340e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_7(s,v,xw); 341e48d15efSToby Isaac v += 49; 342e48d15efSToby Isaac } 343e48d15efSToby Isaac t[i2] = s[0]; t[i2+1] = s[1]; t[i2+2] = s[2]; 344e48d15efSToby Isaac t[i2+3] = s[3]; t[i2+4] = s[4]; t[i2+5] = s[5]; t[i2+6] = s[6]; 345e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_7(xw,idiag,s); 346e48d15efSToby Isaac x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2]; 347e48d15efSToby Isaac x[i2+3] = xw[3]; x[i2+4] = xw[4]; x[i2+5] = xw[5]; x[i2+6] = xw[6]; 348e48d15efSToby Isaac idiag += 49; 349e48d15efSToby Isaac i2 += 7; 350e48d15efSToby Isaac } 351e48d15efSToby Isaac break; 352e48d15efSToby Isaac default: 35396b95a6bSBarry Smith PetscKernel_w_gets_Ar_times_v(bs,bs,b,idiag,x); 354e48d15efSToby Isaac ierr = PetscMemcpy(t,b,bs*sizeof(PetscScalar));CHKERRQ(ierr); 355de80f912SBarry Smith i2 = bs; 356de80f912SBarry Smith idiag += bs2; 357de80f912SBarry Smith for (i=1; i<m; i++) { 358de80f912SBarry Smith v = aa + bs2*ai[i]; 359de80f912SBarry Smith vi = aj + ai[i]; 360de80f912SBarry Smith nz = diag[i] - ai[i]; 361de80f912SBarry Smith 362de80f912SBarry Smith ierr = PetscMemcpy(w,b+i2,bs*sizeof(PetscScalar));CHKERRQ(ierr); 363de80f912SBarry Smith /* copy all rows of x that are needed into contiguous space */ 364de80f912SBarry Smith workt = work; 365de80f912SBarry Smith for (j=0; j<nz; j++) { 366de80f912SBarry Smith ierr = PetscMemcpy(workt,x + bs*(*vi++),bs*sizeof(PetscScalar));CHKERRQ(ierr); 367de80f912SBarry Smith workt += bs; 368de80f912SBarry Smith } 36996b95a6bSBarry Smith PetscKernel_w_gets_w_minus_Ar_times_v(bs,bs*nz,w,v,work); 370e48d15efSToby Isaac ierr = PetscMemcpy(t+i2,w,bs*sizeof(PetscScalar));CHKERRQ(ierr); 37196b95a6bSBarry Smith PetscKernel_w_gets_Ar_times_v(bs,bs,w,idiag,x+i2); 372de80f912SBarry Smith 373de80f912SBarry Smith idiag += bs2; 374de80f912SBarry Smith i2 += bs; 375de80f912SBarry Smith } 376e48d15efSToby Isaac break; 377e48d15efSToby Isaac } 378de80f912SBarry Smith /* for logging purposes assume number of nonzero in lower half is 1/2 of total */ 379e48d15efSToby Isaac ierr = PetscLogFlops(1.0*bs2*a->nz);CHKERRQ(ierr); 380e48d15efSToby Isaac xb = t; 381de80f912SBarry Smith } 382e48d15efSToby Isaac else xb = b; 383de80f912SBarry Smith if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) { 384e48d15efSToby Isaac idiag = a->idiag+bs2*(a->mbs-1); 385e48d15efSToby Isaac i2 = bs * (m-1); 386e48d15efSToby Isaac switch (bs) { 387e48d15efSToby Isaac case 1: 388e48d15efSToby Isaac s[0] = xb[i2]; 389e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_1(xw,idiag,s); 390e48d15efSToby Isaac x[i2] = xw[0]; 391e48d15efSToby Isaac i2 -= 1; 392e48d15efSToby Isaac for (i=m-2; i>=0; i--) { 393e48d15efSToby Isaac v = aa + (diag[i]+1); 394e48d15efSToby Isaac vi = aj + diag[i] + 1; 395e48d15efSToby Isaac nz = ai[i+1] - diag[i] - 1; 396e48d15efSToby Isaac s[0] = xb[i2]; 397e48d15efSToby Isaac for (j=0; j<nz; j++) { 398e48d15efSToby Isaac xw[0] = x[vi[j]]; 399e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_1(s,(v+j),xw); 400e48d15efSToby Isaac } 401e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_1(xw,idiag,s); 402e48d15efSToby Isaac x[i2] = xw[0]; 403e48d15efSToby Isaac idiag -= 1; 404e48d15efSToby Isaac i2 -= 1; 405e48d15efSToby Isaac } 406e48d15efSToby Isaac break; 407e48d15efSToby Isaac case 2: 408e48d15efSToby Isaac s[0] = xb[i2]; s[1] = xb[i2+1]; 409e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_2(xw,idiag,s); 410e48d15efSToby Isaac x[i2] = xw[0]; x[i2+1] = xw[1]; 411e48d15efSToby Isaac i2 -= 2; 412e48d15efSToby Isaac idiag -= 4; 413e48d15efSToby Isaac for (i=m-2; i>=0; i--) { 414e48d15efSToby Isaac v = aa + 4*(diag[i] + 1); 415e48d15efSToby Isaac vi = aj + diag[i] + 1; 416e48d15efSToby Isaac nz = ai[i+1] - diag[i] - 1; 417e48d15efSToby Isaac s[0] = xb[i2]; s[1] = xb[i2+1]; 418e48d15efSToby Isaac for (j=0; j<nz; j++) { 419e48d15efSToby Isaac idx = 2*vi[j]; 420e48d15efSToby Isaac it = 4*j; 421e48d15efSToby Isaac xw[0] = x[idx]; xw[1] = x[1+idx]; 422e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_2(s,(v+it),xw); 423e48d15efSToby Isaac } 424e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_2(xw,idiag,s); 425e48d15efSToby Isaac x[i2] = xw[0]; x[i2+1] = xw[1]; 426e48d15efSToby Isaac idiag -= 4; 427e48d15efSToby Isaac i2 -= 2; 428e48d15efSToby Isaac } 429e48d15efSToby Isaac break; 430e48d15efSToby Isaac case 3: 431e48d15efSToby Isaac s[0] = xb[i2]; s[1] = xb[i2+1]; s[2] = xb[i2+2]; 432e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_3(xw,idiag,s); 433e48d15efSToby Isaac x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2]; 434e48d15efSToby Isaac i2 -= 3; 435e48d15efSToby Isaac idiag -= 9; 436e48d15efSToby Isaac for (i=m-2; i>=0; i--) { 437e48d15efSToby Isaac v = aa + 9*(diag[i]+1); 438e48d15efSToby Isaac vi = aj + diag[i] + 1; 439e48d15efSToby Isaac nz = ai[i+1] - diag[i] - 1; 440e48d15efSToby Isaac s[0] = xb[i2]; s[1] = xb[i2+1]; s[2] = xb[i2+2]; 441e48d15efSToby Isaac while (nz--) { 442e48d15efSToby Isaac idx = 3*(*vi++); 443e48d15efSToby Isaac xw[0] = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; 444e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_3(s,v,xw); 445e48d15efSToby Isaac v += 9; 446e48d15efSToby Isaac } 447e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_3(xw,idiag,s); 448e48d15efSToby Isaac x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2]; 449e48d15efSToby Isaac idiag -= 9; 450e48d15efSToby Isaac i2 -= 3; 451e48d15efSToby Isaac } 452e48d15efSToby Isaac break; 453e48d15efSToby Isaac case 4: 454e48d15efSToby Isaac s[0] = xb[i2]; s[1] = xb[i2+1]; s[2] = xb[i2+2]; s[3] = xb[i2+3]; 455e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_4(xw,idiag,s); 456e48d15efSToby Isaac x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2]; x[i2+3] = xw[3]; 457e48d15efSToby Isaac i2 -= 4; 458e48d15efSToby Isaac idiag -= 16; 459e48d15efSToby Isaac for (i=m-2; i>=0; i--) { 460e48d15efSToby Isaac v = aa + 16*(diag[i]+1); 461e48d15efSToby Isaac vi = aj + diag[i] + 1; 462e48d15efSToby Isaac nz = ai[i+1] - diag[i] - 1; 463e48d15efSToby Isaac s[0] = xb[i2]; s[1] = xb[i2+1]; s[2] = xb[i2+2]; s[3] = xb[i2+3]; 464e48d15efSToby Isaac while (nz--) { 465e48d15efSToby Isaac idx = 4*(*vi++); 466e48d15efSToby Isaac xw[0] = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; xw[3] = x[3+idx]; 467e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_4(s,v,xw); 468e48d15efSToby Isaac v += 16; 469e48d15efSToby Isaac } 470e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_4(xw,idiag,s); 471e48d15efSToby Isaac x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2]; x[i2+3] = xw[3]; 472e48d15efSToby Isaac idiag -= 16; 473e48d15efSToby Isaac i2 -= 4; 474e48d15efSToby Isaac } 475e48d15efSToby Isaac break; 476e48d15efSToby Isaac case 5: 477e48d15efSToby Isaac s[0] = xb[i2]; s[1] = xb[i2+1]; s[2] = xb[i2+2]; s[3] = xb[i2+3]; s[4] = xb[i2+4]; 478e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_5(xw,idiag,s); 479e48d15efSToby Isaac x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2]; x[i2+3] = xw[3]; x[i2+4] = xw[4]; 480e48d15efSToby Isaac i2 -= 5; 481e48d15efSToby Isaac idiag -= 25; 482e48d15efSToby Isaac for (i=m-2; i>=0; i--) { 483e48d15efSToby Isaac v = aa + 25*(diag[i]+1); 484e48d15efSToby Isaac vi = aj + diag[i] + 1; 485e48d15efSToby Isaac nz = ai[i+1] - diag[i] - 1; 486e48d15efSToby Isaac s[0] = xb[i2]; s[1] = xb[i2+1]; s[2] = xb[i2+2]; s[3] = xb[i2+3]; s[4] = xb[i2+4]; 487e48d15efSToby Isaac while (nz--) { 488e48d15efSToby Isaac idx = 5*(*vi++); 489e48d15efSToby Isaac xw[0] = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; xw[3] = x[3+idx]; xw[4] = x[4+idx]; 490e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_5(s,v,xw); 491e48d15efSToby Isaac v += 25; 492e48d15efSToby Isaac } 493e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_5(xw,idiag,s); 494e48d15efSToby Isaac x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2]; x[i2+3] = xw[3]; x[i2+4] = xw[4]; 495e48d15efSToby Isaac idiag -= 25; 496e48d15efSToby Isaac i2 -= 5; 497e48d15efSToby Isaac } 498e48d15efSToby Isaac break; 499e48d15efSToby Isaac case 6: 500e48d15efSToby Isaac s[0] = xb[i2]; s[1] = xb[i2+1]; s[2] = xb[i2+2]; s[3] = xb[i2+3]; s[4] = xb[i2+4]; s[5] = xb[i2+5]; 501e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_6(xw,idiag,s); 502e48d15efSToby Isaac x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2]; x[i2+3] = xw[3]; x[i2+4] = xw[4]; x[i2+5] = xw[5]; 503e48d15efSToby Isaac i2 -= 6; 504e48d15efSToby Isaac idiag -= 36; 505e48d15efSToby Isaac for (i=m-2; i>=0; i--) { 506e48d15efSToby Isaac v = aa + 36*(diag[i]+1); 507e48d15efSToby Isaac vi = aj + diag[i] + 1; 508e48d15efSToby Isaac nz = ai[i+1] - diag[i] - 1; 509e48d15efSToby Isaac s[0] = xb[i2]; s[1] = xb[i2+1]; s[2] = xb[i2+2]; s[3] = xb[i2+3]; s[4] = xb[i2+4]; s[5] = xb[i2+5]; 510e48d15efSToby Isaac while (nz--) { 511e48d15efSToby Isaac idx = 6*(*vi++); 512e48d15efSToby Isaac xw[0] = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; 513e48d15efSToby Isaac xw[3] = x[3+idx]; xw[4] = x[4+idx]; xw[5] = x[5+idx]; 514e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_6(s,v,xw); 515e48d15efSToby Isaac v += 36; 516e48d15efSToby Isaac } 517e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_6(xw,idiag,s); 518e48d15efSToby Isaac x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2]; x[i2+3] = xw[3]; x[i2+4] = xw[4]; x[i2+5] = xw[5]; 519e48d15efSToby Isaac idiag -= 36; 520e48d15efSToby Isaac i2 -= 6; 521e48d15efSToby Isaac } 522e48d15efSToby Isaac break; 523e48d15efSToby Isaac case 7: 524e48d15efSToby Isaac s[0] = xb[i2]; s[1] = xb[i2+1]; s[2] = xb[i2+2]; 525e48d15efSToby Isaac s[3] = xb[i2+3]; s[4] = xb[i2+4]; s[5] = xb[i2+5]; s[6] = xb[i2+6]; 526e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_7(x,idiag,b); 527e48d15efSToby Isaac x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2]; 528e48d15efSToby Isaac x[i2+3] = xw[3]; x[i2+4] = xw[4]; x[i2+5] = xw[5]; x[i2+6] = xw[6]; 529e48d15efSToby Isaac i2 -= 7; 530e48d15efSToby Isaac idiag -= 49; 531e48d15efSToby Isaac for (i=m-2; i>=0; i--) { 532e48d15efSToby Isaac v = aa + 49*(diag[i]+1); 533e48d15efSToby Isaac vi = aj + diag[i] + 1; 534e48d15efSToby Isaac nz = ai[i+1] - diag[i] - 1; 535e48d15efSToby Isaac s[0] = xb[i2]; s[1] = xb[i2+1]; s[2] = xb[i2+2]; 536e48d15efSToby Isaac s[3] = xb[i2+3]; s[4] = xb[i2+4]; s[5] = xb[i2+5]; s[6] = xb[i2+6]; 537e48d15efSToby Isaac while (nz--) { 538e48d15efSToby Isaac idx = 7*(*vi++); 539e48d15efSToby Isaac xw[0] = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; 540e48d15efSToby Isaac xw[3] = x[3+idx]; xw[4] = x[4+idx]; xw[5] = x[5+idx]; xw[6] = x[6+idx]; 541e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_7(s,v,xw); 542e48d15efSToby Isaac v += 49; 543e48d15efSToby Isaac } 544e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_7(xw,idiag,s); 545e48d15efSToby Isaac x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2]; 546e48d15efSToby Isaac x[i2+3] = xw[3]; x[i2+4] = xw[4]; x[i2+5] = xw[5]; x[i2+6] = xw[6]; 547e48d15efSToby Isaac idiag -= 49; 548e48d15efSToby Isaac i2 -= 7; 549e48d15efSToby Isaac } 550e48d15efSToby Isaac break; 551e48d15efSToby Isaac default: 552e48d15efSToby Isaac ierr = PetscMemcpy(w,xb+i2,bs*sizeof(PetscScalar));CHKERRQ(ierr); 55396b95a6bSBarry Smith PetscKernel_w_gets_Ar_times_v(bs,bs,w,idiag,x+i2); 554de80f912SBarry Smith i2 -= bs; 555e48d15efSToby Isaac idiag -= bs2; 556de80f912SBarry Smith for (i=m-2; i>=0; i--) { 557de80f912SBarry Smith v = aa + bs2*(diag[i]+1); 558de80f912SBarry Smith vi = aj + diag[i] + 1; 559de80f912SBarry Smith nz = ai[i+1] - diag[i] - 1; 560de80f912SBarry Smith 561e48d15efSToby Isaac ierr = PetscMemcpy(w,xb+i2,bs*sizeof(PetscScalar));CHKERRQ(ierr); 562de80f912SBarry Smith /* copy all rows of x that are needed into contiguous space */ 563de80f912SBarry Smith workt = work; 564de80f912SBarry Smith for (j=0; j<nz; j++) { 565de80f912SBarry Smith ierr = PetscMemcpy(workt,x + bs*(*vi++),bs*sizeof(PetscScalar));CHKERRQ(ierr); 566de80f912SBarry Smith workt += bs; 567de80f912SBarry Smith } 56896b95a6bSBarry Smith PetscKernel_w_gets_w_minus_Ar_times_v(bs,bs*nz,w,v,work); 56996b95a6bSBarry Smith PetscKernel_w_gets_Ar_times_v(bs,bs,w,idiag,x+i2); 570e48d15efSToby Isaac 571de80f912SBarry Smith idiag -= bs2; 572de80f912SBarry Smith i2 -= bs; 573de80f912SBarry Smith } 574e48d15efSToby Isaac break; 575e48d15efSToby Isaac } 576de80f912SBarry Smith ierr = PetscLogFlops(1.0*bs2*(a->nz));CHKERRQ(ierr); 577de80f912SBarry Smith } 578e48d15efSToby Isaac its--; 579e48d15efSToby Isaac } 580e48d15efSToby Isaac while (its--) { 581e48d15efSToby Isaac if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) { 582e48d15efSToby Isaac idiag = a->idiag; 583e48d15efSToby Isaac i2 = 0; 584e48d15efSToby Isaac switch (bs) { 585e48d15efSToby Isaac case 1: 586e48d15efSToby Isaac for (i=0; i<m; i++) { 587e48d15efSToby Isaac v = aa + ai[i]; 588e48d15efSToby Isaac vi = aj + ai[i]; 589e48d15efSToby Isaac nz = ai[i+1] - ai[i]; 590e48d15efSToby Isaac s[0] = b[i2]; 591e48d15efSToby Isaac for (j=0; j<nz; j++) { 592e48d15efSToby Isaac xw[0] = x[vi[j]]; 593e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_1(s,(v+j),xw); 594e48d15efSToby Isaac } 595e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_1(xw,idiag,s); 596e48d15efSToby Isaac x[i2] += xw[0]; 597e48d15efSToby Isaac idiag += 1; 598e48d15efSToby Isaac i2 += 1; 599e48d15efSToby Isaac } 600e48d15efSToby Isaac break; 601e48d15efSToby Isaac case 2: 602e48d15efSToby Isaac for (i=0; i<m; i++) { 603e48d15efSToby Isaac v = aa + 4*ai[i]; 604e48d15efSToby Isaac vi = aj + ai[i]; 605e48d15efSToby Isaac nz = ai[i+1] - ai[i]; 606e48d15efSToby Isaac s[0] = b[i2]; s[1] = b[i2+1]; 607e48d15efSToby Isaac for (j=0; j<nz; j++) { 608e48d15efSToby Isaac idx = 2*vi[j]; 609e48d15efSToby Isaac it = 4*j; 610e48d15efSToby Isaac xw[0] = x[idx]; xw[1] = x[1+idx]; 611e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_2(s,(v+it),xw); 612e48d15efSToby Isaac } 613e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_2(xw,idiag,s); 614e48d15efSToby Isaac x[i2] += xw[0]; x[i2+1] += xw[1]; 615e48d15efSToby Isaac idiag += 4; 616e48d15efSToby Isaac i2 += 2; 617e48d15efSToby Isaac } 618e48d15efSToby Isaac break; 619e48d15efSToby Isaac case 3: 620e48d15efSToby Isaac for (i=0; i<m; i++) { 621e48d15efSToby Isaac v = aa + 9*ai[i]; 622e48d15efSToby Isaac vi = aj + ai[i]; 623e48d15efSToby Isaac nz = ai[i+1] - ai[i]; 624e48d15efSToby Isaac s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2]; 625e48d15efSToby Isaac while (nz--) { 626e48d15efSToby Isaac idx = 3*(*vi++); 627e48d15efSToby Isaac xw[0] = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; 628e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_3(s,v,xw); 629e48d15efSToby Isaac v += 9; 630e48d15efSToby Isaac } 631e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_3(xw,idiag,s); 632e48d15efSToby Isaac x[i2] += xw[0]; x[i2+1] += xw[1]; x[i2+2] += xw[2]; 633e48d15efSToby Isaac idiag += 9; 634e48d15efSToby Isaac i2 += 3; 635e48d15efSToby Isaac } 636e48d15efSToby Isaac break; 637e48d15efSToby Isaac case 4: 638e48d15efSToby Isaac for (i=0; i<m; i++) { 639e48d15efSToby Isaac v = aa + 16*ai[i]; 640e48d15efSToby Isaac vi = aj + ai[i]; 641e48d15efSToby Isaac nz = ai[i+1] - ai[i]; 642e48d15efSToby Isaac s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2]; s[3] = b[i2+3]; 643e48d15efSToby Isaac while (nz--) { 644e48d15efSToby Isaac idx = 4*(*vi++); 645e48d15efSToby Isaac xw[0] = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; xw[3] = x[3+idx]; 646e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_4(s,v,xw); 647e48d15efSToby Isaac v += 16; 648e48d15efSToby Isaac } 649e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_4(xw,idiag,s); 650e48d15efSToby Isaac x[i2] += xw[0]; x[i2+1] += xw[1]; x[i2+2] += xw[2]; x[i2+3] += xw[3]; 651e48d15efSToby Isaac idiag += 16; 652e48d15efSToby Isaac i2 += 4; 653e48d15efSToby Isaac } 654e48d15efSToby Isaac break; 655e48d15efSToby Isaac case 5: 656e48d15efSToby Isaac for (i=0; i<m; i++) { 657e48d15efSToby Isaac v = aa + 25*ai[i]; 658e48d15efSToby Isaac vi = aj + ai[i]; 659e48d15efSToby Isaac nz = ai[i+1] - ai[i]; 660e48d15efSToby Isaac s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2]; s[3] = b[i2+3]; s[4] = b[i2+4]; 661e48d15efSToby Isaac while (nz--) { 662e48d15efSToby Isaac idx = 5*(*vi++); 663e48d15efSToby Isaac xw[0] = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; xw[3] = x[3+idx]; xw[4] = x[4+idx]; 664e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_5(s,v,xw); 665e48d15efSToby Isaac v += 25; 666e48d15efSToby Isaac } 667e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_5(xw,idiag,s); 668e48d15efSToby Isaac x[i2] += xw[0]; x[i2+1] += xw[1]; x[i2+2] += xw[2]; x[i2+3] += xw[3]; x[i2+4] += xw[4]; 669e48d15efSToby Isaac idiag += 25; 670e48d15efSToby Isaac i2 += 5; 671e48d15efSToby Isaac } 672e48d15efSToby Isaac break; 673e48d15efSToby Isaac case 6: 674e48d15efSToby Isaac for (i=0; i<m; i++) { 675e48d15efSToby Isaac v = aa + 36*ai[i]; 676e48d15efSToby Isaac vi = aj + ai[i]; 677e48d15efSToby Isaac nz = ai[i+1] - ai[i]; 678e48d15efSToby Isaac s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2]; s[3] = b[i2+3]; s[4] = b[i2+4]; s[5] = b[i2+5]; 679e48d15efSToby Isaac while (nz--) { 680e48d15efSToby Isaac idx = 6*(*vi++); 681e48d15efSToby Isaac xw[0] = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; 682e48d15efSToby Isaac xw[3] = x[3+idx]; xw[4] = x[4+idx]; xw[5] = x[5+idx]; 683e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_6(s,v,xw); 684e48d15efSToby Isaac v += 36; 685e48d15efSToby Isaac } 686e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_6(xw,idiag,s); 687e48d15efSToby Isaac x[i2] += xw[0]; x[i2+1] += xw[1]; x[i2+2] += xw[2]; 688e48d15efSToby Isaac x[i2+3] += xw[3]; x[i2+4] += xw[4]; x[i2+5] += xw[5]; 689e48d15efSToby Isaac idiag += 36; 690e48d15efSToby Isaac i2 += 6; 691e48d15efSToby Isaac } 692e48d15efSToby Isaac break; 693e48d15efSToby Isaac case 7: 694e48d15efSToby Isaac for (i=0; i<m; i++) { 695e48d15efSToby Isaac v = aa + 49*ai[i]; 696e48d15efSToby Isaac vi = aj + ai[i]; 697e48d15efSToby Isaac nz = ai[i+1] - ai[i]; 698e48d15efSToby Isaac s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2]; 699e48d15efSToby Isaac s[3] = b[i2+3]; s[4] = b[i2+4]; s[5] = b[i2+5]; s[6] = b[i2+6]; 700e48d15efSToby Isaac while (nz--) { 701e48d15efSToby Isaac idx = 7*(*vi++); 702e48d15efSToby Isaac xw[0] = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; 703e48d15efSToby Isaac xw[3] = x[3+idx]; xw[4] = x[4+idx]; xw[5] = x[5+idx]; xw[6] = x[6+idx]; 704e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_7(s,v,xw); 705e48d15efSToby Isaac v += 49; 706e48d15efSToby Isaac } 707e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_7(xw,idiag,s); 708e48d15efSToby Isaac x[i2] += xw[0]; x[i2+1] += xw[1]; x[i2+2] += xw[2]; 709e48d15efSToby Isaac x[i2+3] += xw[3]; x[i2+4] += xw[4]; x[i2+5] += xw[5]; x[i2+6] += xw[6]; 710e48d15efSToby Isaac idiag += 49; 711e48d15efSToby Isaac i2 += 7; 712e48d15efSToby Isaac } 713e48d15efSToby Isaac break; 714e48d15efSToby Isaac default: 715e48d15efSToby Isaac for (i=0; i<m; i++) { 716e48d15efSToby Isaac v = aa + bs2*ai[i]; 717e48d15efSToby Isaac vi = aj + ai[i]; 718e48d15efSToby Isaac nz = ai[i+1] - ai[i]; 719e48d15efSToby Isaac 720e48d15efSToby Isaac ierr = PetscMemcpy(w,b+i2,bs*sizeof(PetscScalar));CHKERRQ(ierr); 721e48d15efSToby Isaac /* copy all rows of x that are needed into contiguous space */ 722e48d15efSToby Isaac workt = work; 723e48d15efSToby Isaac for (j=0; j<nz; j++) { 724e48d15efSToby Isaac ierr = PetscMemcpy(workt,x + bs*(*vi++),bs*sizeof(PetscScalar));CHKERRQ(ierr); 725e48d15efSToby Isaac workt += bs; 726e48d15efSToby Isaac } 727e48d15efSToby Isaac PetscKernel_w_gets_w_minus_Ar_times_v(bs,bs*nz,w,v,work); 728e48d15efSToby Isaac PetscKernel_w_gets_w_plus_Ar_times_v(bs,bs,w,idiag,x+i2); 729e48d15efSToby Isaac 730e48d15efSToby Isaac idiag += bs2; 731e48d15efSToby Isaac i2 += bs; 732e48d15efSToby Isaac } 733e48d15efSToby Isaac break; 734e48d15efSToby Isaac } 735e48d15efSToby Isaac ierr = PetscLogFlops(2.0*bs2*a->nz);CHKERRQ(ierr); 736e48d15efSToby Isaac } 737e48d15efSToby Isaac if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) { 738e48d15efSToby Isaac idiag = a->idiag+bs2*(a->mbs-1); 739e48d15efSToby Isaac i2 = bs * (m-1); 740e48d15efSToby Isaac switch (bs) { 741e48d15efSToby Isaac case 1: 742e48d15efSToby Isaac for (i=m-1; i>=0; i--) { 743e48d15efSToby Isaac v = aa + ai[i]; 744e48d15efSToby Isaac vi = aj + ai[i]; 745e48d15efSToby Isaac nz = ai[i+1] - ai[i]; 746e48d15efSToby Isaac s[0] = b[i2]; 747e48d15efSToby Isaac for (j=0; j<nz; j++) { 748e48d15efSToby Isaac xw[0] = x[vi[j]]; 749e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_1(s,(v+j),xw); 750e48d15efSToby Isaac } 751e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_1(xw,idiag,s); 752e48d15efSToby Isaac x[i2] += xw[0]; 753e48d15efSToby Isaac idiag -= 1; 754e48d15efSToby Isaac i2 -= 1; 755e48d15efSToby Isaac } 756e48d15efSToby Isaac break; 757e48d15efSToby Isaac case 2: 758e48d15efSToby Isaac for (i=m-1; i>=0; i--) { 759e48d15efSToby Isaac v = aa + 4*ai[i]; 760e48d15efSToby Isaac vi = aj + ai[i]; 761e48d15efSToby Isaac nz = ai[i+1] - ai[i]; 762e48d15efSToby Isaac s[0] = b[i2]; s[1] = b[i2+1]; 763e48d15efSToby Isaac for (j=0; j<nz; j++) { 764e48d15efSToby Isaac idx = 2*vi[j]; 765e48d15efSToby Isaac it = 4*j; 766e48d15efSToby Isaac xw[0] = x[idx]; xw[1] = x[1+idx]; 767e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_2(s,(v+it),xw); 768e48d15efSToby Isaac } 769e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_2(xw,idiag,s); 770e48d15efSToby Isaac x[i2] += xw[0]; x[i2+1] += xw[1]; 771e48d15efSToby Isaac idiag -= 4; 772e48d15efSToby Isaac i2 -= 2; 773e48d15efSToby Isaac } 774e48d15efSToby Isaac break; 775e48d15efSToby Isaac case 3: 776e48d15efSToby Isaac for (i=m-1; i>=0; i--) { 777e48d15efSToby Isaac v = aa + 9*ai[i]; 778e48d15efSToby Isaac vi = aj + ai[i]; 779e48d15efSToby Isaac nz = ai[i+1] - ai[i]; 780e48d15efSToby Isaac s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2]; 781e48d15efSToby Isaac while (nz--) { 782e48d15efSToby Isaac idx = 3*(*vi++); 783e48d15efSToby Isaac xw[0] = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; 784e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_3(s,v,xw); 785e48d15efSToby Isaac v += 9; 786e48d15efSToby Isaac } 787e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_3(xw,idiag,s); 788e48d15efSToby Isaac x[i2] += xw[0]; x[i2+1] += xw[1]; x[i2+2] += xw[2]; 789e48d15efSToby Isaac idiag -= 9; 790e48d15efSToby Isaac i2 -= 3; 791e48d15efSToby Isaac } 792e48d15efSToby Isaac break; 793e48d15efSToby Isaac case 4: 794e48d15efSToby Isaac for (i=m-1; i>=0; i--) { 795e48d15efSToby Isaac v = aa + 16*ai[i]; 796e48d15efSToby Isaac vi = aj + ai[i]; 797e48d15efSToby Isaac nz = ai[i+1] - ai[i]; 798e48d15efSToby Isaac s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2]; s[3] = b[i2+3]; 799e48d15efSToby Isaac while (nz--) { 800e48d15efSToby Isaac idx = 4*(*vi++); 801e48d15efSToby Isaac xw[0] = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; xw[3] = x[3+idx]; 802e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_4(s,v,xw); 803e48d15efSToby Isaac v += 16; 804e48d15efSToby Isaac } 805e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_4(xw,idiag,s); 806e48d15efSToby Isaac x[i2] += xw[0]; x[i2+1] += xw[1]; x[i2+2] += xw[2]; x[i2+3] += xw[3]; 807e48d15efSToby Isaac idiag -= 16; 808e48d15efSToby Isaac i2 -= 4; 809e48d15efSToby Isaac } 810e48d15efSToby Isaac break; 811e48d15efSToby Isaac case 5: 812e48d15efSToby Isaac for (i=m-1; i>=0; i--) { 813e48d15efSToby Isaac v = aa + 25*ai[i]; 814e48d15efSToby Isaac vi = aj + ai[i]; 815e48d15efSToby Isaac nz = ai[i+1] - ai[i]; 816e48d15efSToby Isaac s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2]; s[3] = b[i2+3]; s[4] = b[i2+4]; 817e48d15efSToby Isaac while (nz--) { 818e48d15efSToby Isaac idx = 5*(*vi++); 819e48d15efSToby Isaac xw[0] = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; xw[3] = x[3+idx]; xw[4] = x[4+idx]; 820e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_5(s,v,xw); 821e48d15efSToby Isaac v += 25; 822e48d15efSToby Isaac } 823e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_5(xw,idiag,s); 824e48d15efSToby Isaac x[i2] += xw[0]; x[i2+1] += xw[1]; x[i2+2] += xw[2]; x[i2+3] += xw[3]; x[i2+4] += xw[4]; 825e48d15efSToby Isaac idiag -= 25; 826e48d15efSToby Isaac i2 -= 5; 827e48d15efSToby Isaac } 828e48d15efSToby Isaac break; 829e48d15efSToby Isaac case 6: 830e48d15efSToby Isaac for (i=m-1; i>=0; i--) { 831e48d15efSToby Isaac v = aa + 36*ai[i]; 832e48d15efSToby Isaac vi = aj + ai[i]; 833e48d15efSToby Isaac nz = ai[i+1] - ai[i]; 834e48d15efSToby Isaac s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2]; s[3] = b[i2+3]; s[4] = b[i2+4]; s[5] = b[i2+5]; 835e48d15efSToby Isaac while (nz--) { 836e48d15efSToby Isaac idx = 6*(*vi++); 837e48d15efSToby Isaac xw[0] = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; 838e48d15efSToby Isaac xw[3] = x[3+idx]; xw[4] = x[4+idx]; xw[5] = x[5+idx]; 839e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_6(s,v,xw); 840e48d15efSToby Isaac v += 36; 841e48d15efSToby Isaac } 842e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_6(xw,idiag,s); 843e48d15efSToby Isaac x[i2] += xw[0]; x[i2+1] += xw[1]; x[i2+2] += xw[2]; 844e48d15efSToby Isaac x[i2+3] += xw[3]; x[i2+4] += xw[4]; x[i2+5] += xw[5]; 845e48d15efSToby Isaac idiag -= 36; 846e48d15efSToby Isaac i2 -= 6; 847e48d15efSToby Isaac } 848e48d15efSToby Isaac break; 849e48d15efSToby Isaac case 7: 850e48d15efSToby Isaac for (i=m-1; i>=0; i--) { 851e48d15efSToby Isaac v = aa + 49*ai[i]; 852e48d15efSToby Isaac vi = aj + ai[i]; 853e48d15efSToby Isaac nz = ai[i+1] - ai[i]; 854e48d15efSToby Isaac s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2]; 855e48d15efSToby Isaac s[3] = b[i2+3]; s[4] = b[i2+4]; s[5] = b[i2+5]; s[6] = b[i2+6]; 856e48d15efSToby Isaac while (nz--) { 857e48d15efSToby Isaac idx = 7*(*vi++); 858e48d15efSToby Isaac xw[0] = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; 859e48d15efSToby Isaac xw[3] = x[3+idx]; xw[4] = x[4+idx]; xw[5] = x[5+idx]; xw[6] = x[6+idx]; 860e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_7(s,v,xw); 861e48d15efSToby Isaac v += 49; 862e48d15efSToby Isaac } 863e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_7(xw,idiag,s); 864e48d15efSToby Isaac x[i2] += xw[0]; x[i2+1] += xw[1]; x[i2+2] += xw[2]; 865e48d15efSToby Isaac x[i2+3] += xw[3]; x[i2+4] += xw[4]; x[i2+5] += xw[5]; x[i2+6] += xw[6]; 866e48d15efSToby Isaac idiag -= 49; 867e48d15efSToby Isaac i2 -= 7; 868e48d15efSToby Isaac } 869e48d15efSToby Isaac break; 870e48d15efSToby Isaac default: 871e48d15efSToby Isaac for (i=m-1; i>=0; i--) { 872e48d15efSToby Isaac v = aa + bs2*ai[i]; 873e48d15efSToby Isaac vi = aj + ai[i]; 874e48d15efSToby Isaac nz = ai[i+1] - ai[i]; 875e48d15efSToby Isaac 876e48d15efSToby Isaac ierr = PetscMemcpy(w,b+i2,bs*sizeof(PetscScalar));CHKERRQ(ierr); 877e48d15efSToby Isaac /* copy all rows of x that are needed into contiguous space */ 878e48d15efSToby Isaac workt = work; 879e48d15efSToby Isaac for (j=0; j<nz; j++) { 880e48d15efSToby Isaac ierr = PetscMemcpy(workt,x + bs*(*vi++),bs*sizeof(PetscScalar));CHKERRQ(ierr); 881e48d15efSToby Isaac workt += bs; 882e48d15efSToby Isaac } 883e48d15efSToby Isaac PetscKernel_w_gets_w_minus_Ar_times_v(bs,bs*nz,w,v,work); 884e48d15efSToby Isaac PetscKernel_w_gets_w_plus_Ar_times_v(bs,bs,w,idiag,x+i2); 885e48d15efSToby Isaac 886e48d15efSToby Isaac idiag -= bs2; 887e48d15efSToby Isaac i2 -= bs; 888e48d15efSToby Isaac } 889e48d15efSToby Isaac break; 890e48d15efSToby Isaac } 891e48d15efSToby Isaac ierr = PetscLogFlops(2.0*bs2*(a->nz));CHKERRQ(ierr); 892e48d15efSToby Isaac } 893e48d15efSToby Isaac } 894de80f912SBarry Smith ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 895de80f912SBarry Smith ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr); 896de80f912SBarry Smith PetscFunctionReturn(0); 897de80f912SBarry Smith } 898de80f912SBarry Smith 899e48d15efSToby Isaac 900af674e45SBarry Smith /* 90181824310SBarry Smith Special version for direct calls from Fortran (Used in PETSc-fun3d) 902af674e45SBarry Smith */ 903af674e45SBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS) 904af674e45SBarry Smith #define matsetvaluesblocked4_ MATSETVALUESBLOCKED4 905af674e45SBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 906af674e45SBarry Smith #define matsetvaluesblocked4_ matsetvaluesblocked4 907af674e45SBarry Smith #endif 908af674e45SBarry Smith 909af674e45SBarry Smith #undef __FUNCT__ 910af674e45SBarry Smith #define __FUNCT__ "matsetvaluesblocked4_" 9118cc058d9SJed Brown PETSC_EXTERN void matsetvaluesblocked4_(Mat *AA,PetscInt *mm,const PetscInt im[],PetscInt *nn,const PetscInt in[],const PetscScalar v[]) 912af674e45SBarry Smith { 913af674e45SBarry Smith Mat A = *AA; 914af674e45SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 915c1ac3661SBarry Smith PetscInt *rp,k,low,high,t,ii,jj,row,nrow,i,col,l,N,m = *mm,n = *nn; 916c1ac3661SBarry Smith PetscInt *ai =a->i,*ailen=a->ilen; 91717ec6a02SBarry Smith PetscInt *aj =a->j,stepval,lastcol = -1; 918f15d580aSBarry Smith const PetscScalar *value = v; 9194bb09213Spetsc MatScalar *ap,*aa = a->a,*bap; 920af674e45SBarry Smith 921af674e45SBarry Smith PetscFunctionBegin; 922ce94432eSBarry Smith if (A->rmap->bs != 4) SETERRABORT(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Can only be called with a block size of 4"); 923af674e45SBarry Smith stepval = (n-1)*4; 924af674e45SBarry Smith for (k=0; k<m; k++) { /* loop over added rows */ 925af674e45SBarry Smith row = im[k]; 926af674e45SBarry Smith rp = aj + ai[row]; 927af674e45SBarry Smith ap = aa + 16*ai[row]; 928af674e45SBarry Smith nrow = ailen[row]; 929af674e45SBarry Smith low = 0; 93017ec6a02SBarry Smith high = nrow; 931af674e45SBarry Smith for (l=0; l<n; l++) { /* loop over added columns */ 932af674e45SBarry Smith col = in[l]; 933db4deed7SKarl Rupp if (col <= lastcol) low = 0; 934db4deed7SKarl Rupp else high = nrow; 93517ec6a02SBarry Smith lastcol = col; 9361e3347e8SBarry Smith value = v + k*(stepval+4 + l)*4; 937af674e45SBarry Smith while (high-low > 7) { 938af674e45SBarry Smith t = (low+high)/2; 939af674e45SBarry Smith if (rp[t] > col) high = t; 940af674e45SBarry Smith else low = t; 941af674e45SBarry Smith } 942af674e45SBarry Smith for (i=low; i<high; i++) { 943af674e45SBarry Smith if (rp[i] > col) break; 944af674e45SBarry Smith if (rp[i] == col) { 945af674e45SBarry Smith bap = ap + 16*i; 946af674e45SBarry Smith for (ii=0; ii<4; ii++,value+=stepval) { 947af674e45SBarry Smith for (jj=ii; jj<16; jj+=4) { 948af674e45SBarry Smith bap[jj] += *value++; 949af674e45SBarry Smith } 950af674e45SBarry Smith } 951af674e45SBarry Smith goto noinsert2; 952af674e45SBarry Smith } 953af674e45SBarry Smith } 954af674e45SBarry Smith N = nrow++ - 1; 95517ec6a02SBarry Smith high++; /* added new column index thus must search to one higher than before */ 956af674e45SBarry Smith /* shift up all the later entries in this row */ 957af674e45SBarry Smith for (ii=N; ii>=i; ii--) { 958af674e45SBarry Smith rp[ii+1] = rp[ii]; 959a037b02bSBarry Smith PetscMemcpy(ap+16*(ii+1),ap+16*(ii),16*sizeof(MatScalar)); 960af674e45SBarry Smith } 961af674e45SBarry Smith if (N >= i) { 962a037b02bSBarry Smith PetscMemzero(ap+16*i,16*sizeof(MatScalar)); 963af674e45SBarry Smith } 964af674e45SBarry Smith rp[i] = col; 965af674e45SBarry Smith bap = ap + 16*i; 966af674e45SBarry Smith for (ii=0; ii<4; ii++,value+=stepval) { 967af674e45SBarry Smith for (jj=ii; jj<16; jj+=4) { 968af674e45SBarry Smith bap[jj] = *value++; 969af674e45SBarry Smith } 970af674e45SBarry Smith } 971af674e45SBarry Smith noinsert2:; 972af674e45SBarry Smith low = i; 973af674e45SBarry Smith } 974af674e45SBarry Smith ailen[row] = nrow; 975af674e45SBarry Smith } 976be1d678aSKris Buschelman PetscFunctionReturnVoid(); 977af674e45SBarry Smith } 978af674e45SBarry Smith 979af674e45SBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS) 980af674e45SBarry Smith #define matsetvalues4_ MATSETVALUES4 981af674e45SBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 982af674e45SBarry Smith #define matsetvalues4_ matsetvalues4 983af674e45SBarry Smith #endif 984af674e45SBarry Smith 985af674e45SBarry Smith #undef __FUNCT__ 986af674e45SBarry Smith #define __FUNCT__ "MatSetValues4_" 9878cc058d9SJed Brown PETSC_EXTERN void matsetvalues4_(Mat *AA,PetscInt *mm,PetscInt *im,PetscInt *nn,PetscInt *in,PetscScalar *v) 988af674e45SBarry Smith { 989af674e45SBarry Smith Mat A = *AA; 990af674e45SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 991c1ac3661SBarry Smith PetscInt *rp,k,low,high,t,ii,row,nrow,i,col,l,N,n = *nn,m = *mm; 992c1ac3661SBarry Smith PetscInt *ai=a->i,*ailen=a->ilen; 993c1ac3661SBarry Smith PetscInt *aj=a->j,brow,bcol; 99417ec6a02SBarry Smith PetscInt ridx,cidx,lastcol = -1; 995af674e45SBarry Smith MatScalar *ap,value,*aa=a->a,*bap; 996af674e45SBarry Smith 997af674e45SBarry Smith PetscFunctionBegin; 998af674e45SBarry Smith for (k=0; k<m; k++) { /* loop over added rows */ 999af674e45SBarry Smith row = im[k]; brow = row/4; 1000af674e45SBarry Smith rp = aj + ai[brow]; 1001af674e45SBarry Smith ap = aa + 16*ai[brow]; 1002af674e45SBarry Smith nrow = ailen[brow]; 1003af674e45SBarry Smith low = 0; 100417ec6a02SBarry Smith high = nrow; 1005af674e45SBarry Smith for (l=0; l<n; l++) { /* loop over added columns */ 1006af674e45SBarry Smith col = in[l]; bcol = col/4; 1007af674e45SBarry Smith ridx = row % 4; cidx = col % 4; 1008af674e45SBarry Smith value = v[l + k*n]; 1009db4deed7SKarl Rupp if (col <= lastcol) low = 0; 1010db4deed7SKarl Rupp else high = nrow; 101117ec6a02SBarry Smith lastcol = col; 1012af674e45SBarry Smith while (high-low > 7) { 1013af674e45SBarry Smith t = (low+high)/2; 1014af674e45SBarry Smith if (rp[t] > bcol) high = t; 1015af674e45SBarry Smith else low = t; 1016af674e45SBarry Smith } 1017af674e45SBarry Smith for (i=low; i<high; i++) { 1018af674e45SBarry Smith if (rp[i] > bcol) break; 1019af674e45SBarry Smith if (rp[i] == bcol) { 1020af674e45SBarry Smith bap = ap + 16*i + 4*cidx + ridx; 1021af674e45SBarry Smith *bap += value; 1022af674e45SBarry Smith goto noinsert1; 1023af674e45SBarry Smith } 1024af674e45SBarry Smith } 1025af674e45SBarry Smith N = nrow++ - 1; 102617ec6a02SBarry Smith high++; /* added new column thus must search to one higher than before */ 1027af674e45SBarry Smith /* shift up all the later entries in this row */ 1028af674e45SBarry Smith for (ii=N; ii>=i; ii--) { 1029af674e45SBarry Smith rp[ii+1] = rp[ii]; 1030a037b02bSBarry Smith PetscMemcpy(ap+16*(ii+1),ap+16*(ii),16*sizeof(MatScalar)); 1031af674e45SBarry Smith } 1032af674e45SBarry Smith if (N>=i) { 1033a037b02bSBarry Smith PetscMemzero(ap+16*i,16*sizeof(MatScalar)); 1034af674e45SBarry Smith } 1035af674e45SBarry Smith rp[i] = bcol; 1036af674e45SBarry Smith ap[16*i + 4*cidx + ridx] = value; 1037af674e45SBarry Smith noinsert1:; 1038af674e45SBarry Smith low = i; 1039af674e45SBarry Smith } 1040af674e45SBarry Smith ailen[brow] = nrow; 1041af674e45SBarry Smith } 1042be1d678aSKris Buschelman PetscFunctionReturnVoid(); 1043af674e45SBarry Smith } 1044af674e45SBarry Smith 1045be5855fcSBarry Smith /* 1046be5855fcSBarry Smith Checks for missing diagonals 1047be5855fcSBarry Smith */ 10484a2ae208SSatish Balay #undef __FUNCT__ 10494a2ae208SSatish Balay #define __FUNCT__ "MatMissingDiagonal_SeqBAIJ" 1050ace3abfcSBarry Smith PetscErrorCode MatMissingDiagonal_SeqBAIJ(Mat A,PetscBool *missing,PetscInt *d) 1051be5855fcSBarry Smith { 1052be5855fcSBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 10536849ba73SBarry Smith PetscErrorCode ierr; 10547734d3b5SMatthew G. Knepley PetscInt *diag,*ii = a->i,i; 1055be5855fcSBarry Smith 1056be5855fcSBarry Smith PetscFunctionBegin; 1057c4992f7dSBarry Smith ierr = MatMarkDiagonal_SeqBAIJ(A);CHKERRQ(ierr); 10582af78befSBarry Smith *missing = PETSC_FALSE; 10597734d3b5SMatthew G. Knepley if (A->rmap->n > 0 && !ii) { 10602efa7f71SHong Zhang *missing = PETSC_TRUE; 10612efa7f71SHong Zhang if (d) *d = 0; 1062955c1f14SBarry Smith PetscInfo(A,"Matrix has no entries therefore is missing diagonal\n"); 10632efa7f71SHong Zhang } else { 1064883fce79SBarry Smith diag = a->diag; 10650e8e8aceSBarry Smith for (i=0; i<a->mbs; i++) { 10667734d3b5SMatthew G. Knepley if (diag[i] >= ii[i+1]) { 10672af78befSBarry Smith *missing = PETSC_TRUE; 10682af78befSBarry Smith if (d) *d = i; 1069955c1f14SBarry Smith PetscInfo1(A,"Matrix is missing block diagonal number %D\n",i); 1070358d2f5dSShri Abhyankar break; 10712efa7f71SHong Zhang } 1072be5855fcSBarry Smith } 1073be5855fcSBarry Smith } 1074be5855fcSBarry Smith PetscFunctionReturn(0); 1075be5855fcSBarry Smith } 1076be5855fcSBarry Smith 10774a2ae208SSatish Balay #undef __FUNCT__ 10784a2ae208SSatish Balay #define __FUNCT__ "MatMarkDiagonal_SeqBAIJ" 1079dfbe8321SBarry Smith PetscErrorCode MatMarkDiagonal_SeqBAIJ(Mat A) 1080de6a44a3SBarry Smith { 1081de6a44a3SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 10826849ba73SBarry Smith PetscErrorCode ierr; 108309f38230SBarry Smith PetscInt i,j,m = a->mbs; 1084de6a44a3SBarry Smith 10853a40ed3dSBarry Smith PetscFunctionBegin; 108609f38230SBarry Smith if (!a->diag) { 1087785e854fSJed Brown ierr = PetscMalloc1(m,&a->diag);CHKERRQ(ierr); 10883bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)A,m*sizeof(PetscInt));CHKERRQ(ierr); 10894fd072dbSBarry Smith a->free_diag = PETSC_TRUE; 109009f38230SBarry Smith } 10917fc0212eSBarry Smith for (i=0; i<m; i++) { 109209f38230SBarry Smith a->diag[i] = a->i[i+1]; 1093de6a44a3SBarry Smith for (j=a->i[i]; j<a->i[i+1]; j++) { 1094de6a44a3SBarry Smith if (a->j[j] == i) { 109509f38230SBarry Smith a->diag[i] = j; 1096de6a44a3SBarry Smith break; 1097de6a44a3SBarry Smith } 1098de6a44a3SBarry Smith } 1099de6a44a3SBarry Smith } 11003a40ed3dSBarry Smith PetscFunctionReturn(0); 1101de6a44a3SBarry Smith } 11022593348eSBarry Smith 11032593348eSBarry Smith 11044a2ae208SSatish Balay #undef __FUNCT__ 11054a2ae208SSatish Balay #define __FUNCT__ "MatGetRowIJ_SeqBAIJ" 11061a83f524SJed Brown static PetscErrorCode MatGetRowIJ_SeqBAIJ(Mat A,PetscInt oshift,PetscBool symmetric,PetscBool blockcompressed,PetscInt *nn,const PetscInt *inia[],const PetscInt *inja[],PetscBool *done) 11073b2fbd54SBarry Smith { 11083b2fbd54SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 1109dfbe8321SBarry Smith PetscErrorCode ierr; 11101a83f524SJed Brown PetscInt i,j,n = a->mbs,nz = a->i[n],*tia,*tja,bs = A->rmap->bs,k,l,cnt; 11111a83f524SJed Brown PetscInt **ia = (PetscInt**)inia,**ja = (PetscInt**)inja; 11123b2fbd54SBarry Smith 11133a40ed3dSBarry Smith PetscFunctionBegin; 11143b2fbd54SBarry Smith *nn = n; 11153a40ed3dSBarry Smith if (!ia) PetscFunctionReturn(0); 11163b2fbd54SBarry Smith if (symmetric) { 11178f7157efSSatish Balay ierr = MatToSymmetricIJ_SeqAIJ(n,a->i,a->j,0,0,&tia,&tja);CHKERRQ(ierr); 1118553b3c51SBarry Smith nz = tia[n]; 11193b2fbd54SBarry Smith } else { 11208f7157efSSatish Balay tia = a->i; tja = a->j; 11213b2fbd54SBarry Smith } 11223b2fbd54SBarry Smith 1123ecc77c7aSBarry Smith if (!blockcompressed && bs > 1) { 1124ecc77c7aSBarry Smith (*nn) *= bs; 11258f7157efSSatish Balay /* malloc & create the natural set of indices */ 1126785e854fSJed Brown ierr = PetscMalloc1((n+1)*bs,ia);CHKERRQ(ierr); 11279985e31cSBarry Smith if (n) { 1128ecc77c7aSBarry Smith (*ia)[0] = 0; 1129ecc77c7aSBarry Smith for (j=1; j<bs; j++) { 1130ecc77c7aSBarry Smith (*ia)[j] = (tia[1]-tia[0])*bs+(*ia)[j-1]; 1131ecc77c7aSBarry Smith } 11329985e31cSBarry Smith } 1133ecc77c7aSBarry Smith 1134ecc77c7aSBarry Smith for (i=1; i<n; i++) { 1135ecc77c7aSBarry Smith (*ia)[i*bs] = (tia[i]-tia[i-1])*bs + (*ia)[i*bs-1]; 1136ecc77c7aSBarry Smith for (j=1; j<bs; j++) { 1137ecc77c7aSBarry Smith (*ia)[i*bs+j] = (tia[i+1]-tia[i])*bs + (*ia)[i*bs+j-1]; 11388f7157efSSatish Balay } 11398f7157efSSatish Balay } 11409985e31cSBarry Smith if (n) { 1141ecc77c7aSBarry Smith (*ia)[n*bs] = (tia[n]-tia[n-1])*bs + (*ia)[n*bs-1]; 11429985e31cSBarry Smith } 1143ecc77c7aSBarry Smith 11441a83f524SJed Brown if (inja) { 1145785e854fSJed Brown ierr = PetscMalloc1(nz*bs*bs,ja);CHKERRQ(ierr); 11469985e31cSBarry Smith cnt = 0; 11479985e31cSBarry Smith for (i=0; i<n; i++) { 11489985e31cSBarry Smith for (j=0; j<bs; j++) { 11499985e31cSBarry Smith for (k=tia[i]; k<tia[i+1]; k++) { 11509985e31cSBarry Smith for (l=0; l<bs; l++) { 11519985e31cSBarry Smith (*ja)[cnt++] = bs*tja[k] + l; 11529985e31cSBarry Smith } 11539985e31cSBarry Smith } 11549985e31cSBarry Smith } 11559985e31cSBarry Smith } 11569985e31cSBarry Smith } 11579985e31cSBarry Smith 11588f7157efSSatish Balay if (symmetric) { /* deallocate memory allocated in MatToSymmetricIJ_SeqAIJ() */ 11598f7157efSSatish Balay ierr = PetscFree(tia);CHKERRQ(ierr); 11608f7157efSSatish Balay ierr = PetscFree(tja);CHKERRQ(ierr); 11618f7157efSSatish Balay } 1162f6d58c54SBarry Smith } else if (oshift == 1) { 1163715a17b5SBarry Smith if (symmetric) { 1164a2ea699eSBarry Smith nz = tia[A->rmap->n/bs]; 1165715a17b5SBarry Smith /* add 1 to i and j indices */ 1166715a17b5SBarry Smith for (i=0; i<A->rmap->n/bs+1; i++) tia[i] = tia[i] + 1; 1167715a17b5SBarry Smith *ia = tia; 1168715a17b5SBarry Smith if (ja) { 1169715a17b5SBarry Smith for (i=0; i<nz; i++) tja[i] = tja[i] + 1; 1170715a17b5SBarry Smith *ja = tja; 1171715a17b5SBarry Smith } 1172715a17b5SBarry Smith } else { 1173a2ea699eSBarry Smith nz = a->i[A->rmap->n/bs]; 1174f6d58c54SBarry Smith /* malloc space and add 1 to i and j indices */ 1175854ce69bSBarry Smith ierr = PetscMalloc1(A->rmap->n/bs+1,ia);CHKERRQ(ierr); 1176f6d58c54SBarry Smith for (i=0; i<A->rmap->n/bs+1; i++) (*ia)[i] = a->i[i] + 1; 1177f6d58c54SBarry Smith if (ja) { 1178785e854fSJed Brown ierr = PetscMalloc1(nz,ja);CHKERRQ(ierr); 1179f6d58c54SBarry Smith for (i=0; i<nz; i++) (*ja)[i] = a->j[i] + 1; 1180f6d58c54SBarry Smith } 1181715a17b5SBarry Smith } 11828f7157efSSatish Balay } else { 11838f7157efSSatish Balay *ia = tia; 1184ecc77c7aSBarry Smith if (ja) *ja = tja; 11858f7157efSSatish Balay } 11863a40ed3dSBarry Smith PetscFunctionReturn(0); 11873b2fbd54SBarry Smith } 11883b2fbd54SBarry Smith 11894a2ae208SSatish Balay #undef __FUNCT__ 11904a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRowIJ_SeqBAIJ" 11911a83f524SJed Brown static PetscErrorCode MatRestoreRowIJ_SeqBAIJ(Mat A,PetscInt oshift,PetscBool symmetric,PetscBool blockcompressed,PetscInt *nn,const PetscInt *ia[],const PetscInt *ja[],PetscBool *done) 11923b2fbd54SBarry Smith { 11936849ba73SBarry Smith PetscErrorCode ierr; 11943b2fbd54SBarry Smith 11953a40ed3dSBarry Smith PetscFunctionBegin; 11963a40ed3dSBarry Smith if (!ia) PetscFunctionReturn(0); 1197715a17b5SBarry Smith if ((!blockcompressed && A->rmap->bs > 1) || (symmetric || oshift == 1)) { 1198606d414cSSatish Balay ierr = PetscFree(*ia);CHKERRQ(ierr); 11999985e31cSBarry Smith if (ja) {ierr = PetscFree(*ja);CHKERRQ(ierr);} 12003b2fbd54SBarry Smith } 12013a40ed3dSBarry Smith PetscFunctionReturn(0); 12023b2fbd54SBarry Smith } 12033b2fbd54SBarry Smith 12044a2ae208SSatish Balay #undef __FUNCT__ 12054a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_SeqBAIJ" 1206dfbe8321SBarry Smith PetscErrorCode MatDestroy_SeqBAIJ(Mat A) 12072d61bbb3SSatish Balay { 12082d61bbb3SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 1209dfbe8321SBarry Smith PetscErrorCode ierr; 12102d61bbb3SSatish Balay 1211433994e6SBarry Smith PetscFunctionBegin; 1212aa482453SBarry Smith #if defined(PETSC_USE_LOG) 1213d0f46423SBarry Smith PetscLogObjectState((PetscObject)A,"Rows=%D, Cols=%D, NZ=%D",A->rmap->N,A->cmap->n,a->nz); 12142d61bbb3SSatish Balay #endif 1215e6b907acSBarry Smith ierr = MatSeqXAIJFreeAIJ(A,&a->a,&a->j,&a->i);CHKERRQ(ierr); 12166bf464f9SBarry Smith ierr = ISDestroy(&a->row);CHKERRQ(ierr); 12176bf464f9SBarry Smith ierr = ISDestroy(&a->col);CHKERRQ(ierr); 12184fd072dbSBarry Smith if (a->free_diag) {ierr = PetscFree(a->diag);CHKERRQ(ierr);} 121905b42c5fSBarry Smith ierr = PetscFree(a->idiag);CHKERRQ(ierr); 12204fd072dbSBarry Smith if (a->free_imax_ilen) {ierr = PetscFree2(a->imax,a->ilen);CHKERRQ(ierr);} 122105b42c5fSBarry Smith ierr = PetscFree(a->solve_work);CHKERRQ(ierr); 122205b42c5fSBarry Smith ierr = PetscFree(a->mult_work);CHKERRQ(ierr); 1223f361c04dSBarry Smith ierr = PetscFree(a->sor_workt);CHKERRQ(ierr); 1224de80f912SBarry Smith ierr = PetscFree(a->sor_work);CHKERRQ(ierr); 12256bf464f9SBarry Smith ierr = ISDestroy(&a->icol);CHKERRQ(ierr); 122605b42c5fSBarry Smith ierr = PetscFree(a->saved_values);CHKERRQ(ierr); 1227cd6b891eSBarry Smith ierr = PetscFree2(a->compressedrow.i,a->compressedrow.rindex);CHKERRQ(ierr); 1228c4319e64SHong Zhang 12296bf464f9SBarry Smith ierr = MatDestroy(&a->sbaijMat);CHKERRQ(ierr); 12306bf464f9SBarry Smith ierr = MatDestroy(&a->parent);CHKERRQ(ierr); 1231bf0cc555SLisandro Dalcin ierr = PetscFree(A->data);CHKERRQ(ierr); 1232901853e0SKris Buschelman 1233dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)A,0);CHKERRQ(ierr); 1234bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)A,"MatInvertBlockDiagonal_C",NULL);CHKERRQ(ierr); 1235bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)A,"MatStoreValues_C",NULL);CHKERRQ(ierr); 1236bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)A,"MatRetrieveValues_C",NULL);CHKERRQ(ierr); 1237bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqBAIJSetColumnIndices_C",NULL);CHKERRQ(ierr); 1238bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqbaij_seqaij_C",NULL);CHKERRQ(ierr); 1239bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqbaij_seqsbaij_C",NULL);CHKERRQ(ierr); 1240bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqBAIJSetPreallocation_C",NULL);CHKERRQ(ierr); 1241bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqBAIJSetPreallocationCSR_C",NULL);CHKERRQ(ierr); 1242bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqbaij_seqbstrm_C",NULL);CHKERRQ(ierr); 1243bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)A,"MatIsTranspose_C",NULL);CHKERRQ(ierr); 12442d61bbb3SSatish Balay PetscFunctionReturn(0); 12452d61bbb3SSatish Balay } 12462d61bbb3SSatish Balay 12474a2ae208SSatish Balay #undef __FUNCT__ 12484a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_SeqBAIJ" 1249ace3abfcSBarry Smith PetscErrorCode MatSetOption_SeqBAIJ(Mat A,MatOption op,PetscBool flg) 12502d61bbb3SSatish Balay { 12512d61bbb3SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 125263ba0a88SBarry Smith PetscErrorCode ierr; 12532d61bbb3SSatish Balay 12542d61bbb3SSatish Balay PetscFunctionBegin; 1255aa275fccSKris Buschelman switch (op) { 1256aa275fccSKris Buschelman case MAT_ROW_ORIENTED: 12574e0d8c25SBarry Smith a->roworiented = flg; 1258aa275fccSKris Buschelman break; 1259a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 1260a9817697SBarry Smith a->keepnonzeropattern = flg; 1261aa275fccSKris Buschelman break; 1262512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1263512a5fc5SBarry Smith a->nonew = (flg ? 0 : 1); 1264aa275fccSKris Buschelman break; 1265aa275fccSKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 12664e0d8c25SBarry Smith a->nonew = (flg ? -1 : 0); 1267aa275fccSKris Buschelman break; 1268aa275fccSKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 12694e0d8c25SBarry Smith a->nonew = (flg ? -2 : 0); 1270aa275fccSKris Buschelman break; 127128b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 127228b2fa4aSMatthew Knepley a->nounused = (flg ? -1 : 0); 127328b2fa4aSMatthew Knepley break; 12744e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1275aa275fccSKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 1276aa275fccSKris Buschelman case MAT_USE_HASH_TABLE: 1277290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 1278aa275fccSKris Buschelman break; 12795021d80fSJed Brown case MAT_SPD: 128077e54ba9SKris Buschelman case MAT_SYMMETRIC: 128177e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 12829a4540c5SBarry Smith case MAT_HERMITIAN: 12839a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 12845021d80fSJed Brown /* These options are handled directly by MatSetOption() */ 128577e54ba9SKris Buschelman break; 1286aa275fccSKris Buschelman default: 1287e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op); 12882d61bbb3SSatish Balay } 12892d61bbb3SSatish Balay PetscFunctionReturn(0); 12902d61bbb3SSatish Balay } 12912d61bbb3SSatish Balay 129252768537SHong Zhang /* used for both SeqBAIJ and SeqSBAIJ matrices */ 12934a2ae208SSatish Balay #undef __FUNCT__ 129452768537SHong Zhang #define __FUNCT__ "MatGetRow_SeqBAIJ_private" 129552768537SHong Zhang PetscErrorCode MatGetRow_SeqBAIJ_private(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v,PetscInt *ai,PetscInt *aj,PetscScalar *aa) 12962d61bbb3SSatish Balay { 12976849ba73SBarry Smith PetscErrorCode ierr; 129852768537SHong Zhang PetscInt itmp,i,j,k,M,bn,bp,*idx_i,bs,bs2; 129952768537SHong Zhang MatScalar *aa_i; 130087828ca2SBarry Smith PetscScalar *v_i; 13012d61bbb3SSatish Balay 13022d61bbb3SSatish Balay PetscFunctionBegin; 1303d0f46423SBarry Smith bs = A->rmap->bs; 130452768537SHong Zhang bs2 = bs*bs; 1305e32f2f54SBarry Smith if (row < 0 || row >= A->rmap->N) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %D out of range", row); 13062d61bbb3SSatish Balay 13072d61bbb3SSatish Balay bn = row/bs; /* Block number */ 13082d61bbb3SSatish Balay bp = row % bs; /* Block Position */ 13092d61bbb3SSatish Balay M = ai[bn+1] - ai[bn]; 13102d61bbb3SSatish Balay *nz = bs*M; 13112d61bbb3SSatish Balay 13122d61bbb3SSatish Balay if (v) { 13132d61bbb3SSatish Balay *v = 0; 13142d61bbb3SSatish Balay if (*nz) { 1315854ce69bSBarry Smith ierr = PetscMalloc1(*nz,v);CHKERRQ(ierr); 13162d61bbb3SSatish Balay for (i=0; i<M; i++) { /* for each block in the block row */ 13172d61bbb3SSatish Balay v_i = *v + i*bs; 13182d61bbb3SSatish Balay aa_i = aa + bs2*(ai[bn] + i); 131926fbe8dcSKarl Rupp for (j=bp,k=0; j<bs2; j+=bs,k++) v_i[k] = aa_i[j]; 13202d61bbb3SSatish Balay } 13212d61bbb3SSatish Balay } 13222d61bbb3SSatish Balay } 13232d61bbb3SSatish Balay 13242d61bbb3SSatish Balay if (idx) { 13252d61bbb3SSatish Balay *idx = 0; 13262d61bbb3SSatish Balay if (*nz) { 1327854ce69bSBarry Smith ierr = PetscMalloc1(*nz,idx);CHKERRQ(ierr); 13282d61bbb3SSatish Balay for (i=0; i<M; i++) { /* for each block in the block row */ 13292d61bbb3SSatish Balay idx_i = *idx + i*bs; 13302d61bbb3SSatish Balay itmp = bs*aj[ai[bn] + i]; 133126fbe8dcSKarl Rupp for (j=0; j<bs; j++) idx_i[j] = itmp++; 13322d61bbb3SSatish Balay } 13332d61bbb3SSatish Balay } 13342d61bbb3SSatish Balay } 13352d61bbb3SSatish Balay PetscFunctionReturn(0); 13362d61bbb3SSatish Balay } 13372d61bbb3SSatish Balay 13384a2ae208SSatish Balay #undef __FUNCT__ 133952768537SHong Zhang #define __FUNCT__ "MatGetRow_SeqBAIJ" 134052768537SHong Zhang PetscErrorCode MatGetRow_SeqBAIJ(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 134152768537SHong Zhang { 134252768537SHong Zhang Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 134352768537SHong Zhang PetscErrorCode ierr; 134452768537SHong Zhang 134552768537SHong Zhang PetscFunctionBegin; 134652768537SHong Zhang ierr = MatGetRow_SeqBAIJ_private(A,row,nz,idx,v,a->i,a->j,a->a);CHKERRQ(ierr); 134752768537SHong Zhang PetscFunctionReturn(0); 134852768537SHong Zhang } 134952768537SHong Zhang 135052768537SHong Zhang #undef __FUNCT__ 13514a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_SeqBAIJ" 1352c1ac3661SBarry Smith PetscErrorCode MatRestoreRow_SeqBAIJ(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 13532d61bbb3SSatish Balay { 1354dfbe8321SBarry Smith PetscErrorCode ierr; 1355606d414cSSatish Balay 13562d61bbb3SSatish Balay PetscFunctionBegin; 135705b42c5fSBarry Smith if (idx) {ierr = PetscFree(*idx);CHKERRQ(ierr);} 135805b42c5fSBarry Smith if (v) {ierr = PetscFree(*v);CHKERRQ(ierr);} 13592d61bbb3SSatish Balay PetscFunctionReturn(0); 13602d61bbb3SSatish Balay } 13612d61bbb3SSatish Balay 1362fca92195SBarry Smith extern PetscErrorCode MatSetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 1363fca92195SBarry Smith 13644a2ae208SSatish Balay #undef __FUNCT__ 13654a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_SeqBAIJ" 1366fc4dec0aSBarry Smith PetscErrorCode MatTranspose_SeqBAIJ(Mat A,MatReuse reuse,Mat *B) 13672d61bbb3SSatish Balay { 13682d61bbb3SSatish Balay Mat_SeqBAIJ *a=(Mat_SeqBAIJ*)A->data; 13692d61bbb3SSatish Balay Mat C; 13706849ba73SBarry Smith PetscErrorCode ierr; 1371d0f46423SBarry Smith PetscInt i,j,k,*aj=a->j,*ai=a->i,bs=A->rmap->bs,mbs=a->mbs,nbs=a->nbs,len,*col; 1372c1ac3661SBarry Smith PetscInt *rows,*cols,bs2=a->bs2; 1373dd6ea824SBarry Smith MatScalar *array; 13742d61bbb3SSatish Balay 13752d61bbb3SSatish Balay PetscFunctionBegin; 1376e32f2f54SBarry Smith if (reuse == MAT_REUSE_MATRIX && A == *B && mbs != nbs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Square matrix only for in-place"); 1377fc4dec0aSBarry Smith if (reuse == MAT_INITIAL_MATRIX || A == *B) { 1378854ce69bSBarry Smith ierr = PetscCalloc1(1+nbs,&col);CHKERRQ(ierr); 13792d61bbb3SSatish Balay 13802d61bbb3SSatish Balay for (i=0; i<ai[mbs]; i++) col[aj[i]] += 1; 1381ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&C);CHKERRQ(ierr); 1382d0f46423SBarry Smith ierr = MatSetSizes(C,A->cmap->n,A->rmap->N,A->cmap->n,A->rmap->N);CHKERRQ(ierr); 13837adad957SLisandro Dalcin ierr = MatSetType(C,((PetscObject)A)->type_name);CHKERRQ(ierr); 1384ecd8bba6SJed Brown ierr = MatSeqBAIJSetPreallocation_SeqBAIJ(C,bs,0,col);CHKERRQ(ierr); 1385606d414cSSatish Balay ierr = PetscFree(col);CHKERRQ(ierr); 1386fc4dec0aSBarry Smith } else { 1387fc4dec0aSBarry Smith C = *B; 1388fc4dec0aSBarry Smith } 1389fc4dec0aSBarry Smith 1390fc4dec0aSBarry Smith array = a->a; 1391dcca6d9dSJed Brown ierr = PetscMalloc2(bs,&rows,bs,&cols);CHKERRQ(ierr); 13922d61bbb3SSatish Balay for (i=0; i<mbs; i++) { 13932d61bbb3SSatish Balay cols[0] = i*bs; 13942d61bbb3SSatish Balay for (k=1; k<bs; k++) cols[k] = cols[k-1] + 1; 13952d61bbb3SSatish Balay len = ai[i+1] - ai[i]; 13962d61bbb3SSatish Balay for (j=0; j<len; j++) { 13972d61bbb3SSatish Balay rows[0] = (*aj++)*bs; 13982d61bbb3SSatish Balay for (k=1; k<bs; k++) rows[k] = rows[k-1] + 1; 1399fca92195SBarry Smith ierr = MatSetValues_SeqBAIJ(C,bs,rows,bs,cols,array,INSERT_VALUES);CHKERRQ(ierr); 14002d61bbb3SSatish Balay array += bs2; 14012d61bbb3SSatish Balay } 14022d61bbb3SSatish Balay } 1403fca92195SBarry Smith ierr = PetscFree2(rows,cols);CHKERRQ(ierr); 14042d61bbb3SSatish Balay 14052d61bbb3SSatish Balay ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 14062d61bbb3SSatish Balay ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 14072d61bbb3SSatish Balay 1408815cbec1SBarry Smith if (reuse == MAT_INITIAL_MATRIX || *B != A) { 14092d61bbb3SSatish Balay *B = C; 14102d61bbb3SSatish Balay } else { 141128be2f97SBarry Smith ierr = MatHeaderMerge(A,&C);CHKERRQ(ierr); 14122d61bbb3SSatish Balay } 14132d61bbb3SSatish Balay PetscFunctionReturn(0); 14142d61bbb3SSatish Balay } 14152d61bbb3SSatish Balay 1416453d3561SHong Zhang #undef __FUNCT__ 1417453d3561SHong Zhang #define __FUNCT__ "MatIsTranspose_SeqBAIJ" 1418453d3561SHong Zhang PetscErrorCode MatIsTranspose_SeqBAIJ(Mat A,Mat B,PetscReal tol,PetscBool *f) 1419453d3561SHong Zhang { 1420453d3561SHong Zhang PetscErrorCode ierr; 1421453d3561SHong Zhang Mat Btrans; 1422453d3561SHong Zhang 1423453d3561SHong Zhang PetscFunctionBegin; 1424453d3561SHong Zhang *f = PETSC_FALSE; 1425453d3561SHong Zhang ierr = MatTranspose_SeqBAIJ(A,MAT_INITIAL_MATRIX,&Btrans);CHKERRQ(ierr); 1426453d3561SHong Zhang ierr = MatEqual_SeqBAIJ(B,Btrans,f);CHKERRQ(ierr); 1427453d3561SHong Zhang ierr = MatDestroy(&Btrans);CHKERRQ(ierr); 1428453d3561SHong Zhang PetscFunctionReturn(0); 1429453d3561SHong Zhang } 1430453d3561SHong Zhang 14314a2ae208SSatish Balay #undef __FUNCT__ 14324a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqBAIJ_Binary" 14336849ba73SBarry Smith static PetscErrorCode MatView_SeqBAIJ_Binary(Mat A,PetscViewer viewer) 14342593348eSBarry Smith { 1435b6490206SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 14366849ba73SBarry Smith PetscErrorCode ierr; 1437d0f46423SBarry Smith PetscInt i,*col_lens,bs = A->rmap->bs,count,*jj,j,k,l,bs2=a->bs2; 1438b24ad042SBarry Smith int fd; 143987828ca2SBarry Smith PetscScalar *aa; 1440ce6f0cecSBarry Smith FILE *file; 14412593348eSBarry Smith 14423a40ed3dSBarry Smith PetscFunctionBegin; 1443b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 1444854ce69bSBarry Smith ierr = PetscMalloc1(4+A->rmap->N,&col_lens);CHKERRQ(ierr); 14450700a824SBarry Smith col_lens[0] = MAT_FILE_CLASSID; 14463b2fbd54SBarry Smith 1447d0f46423SBarry Smith col_lens[1] = A->rmap->N; 1448d0f46423SBarry Smith col_lens[2] = A->cmap->n; 14497e67e3f9SSatish Balay col_lens[3] = a->nz*bs2; 14502593348eSBarry Smith 14512593348eSBarry Smith /* store lengths of each row and write (including header) to file */ 1452b6490206SBarry Smith count = 0; 1453b6490206SBarry Smith for (i=0; i<a->mbs; i++) { 1454b6490206SBarry Smith for (j=0; j<bs; j++) { 1455b6490206SBarry Smith col_lens[4+count++] = bs*(a->i[i+1] - a->i[i]); 1456b6490206SBarry Smith } 14572593348eSBarry Smith } 1458d0f46423SBarry Smith ierr = PetscBinaryWrite(fd,col_lens,4+A->rmap->N,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 1459606d414cSSatish Balay ierr = PetscFree(col_lens);CHKERRQ(ierr); 14602593348eSBarry Smith 14612593348eSBarry Smith /* store column indices (zero start index) */ 1462785e854fSJed Brown ierr = PetscMalloc1((a->nz+1)*bs2,&jj);CHKERRQ(ierr); 1463b6490206SBarry Smith count = 0; 1464b6490206SBarry Smith for (i=0; i<a->mbs; i++) { 1465b6490206SBarry Smith for (j=0; j<bs; j++) { 1466b6490206SBarry Smith for (k=a->i[i]; k<a->i[i+1]; k++) { 1467b6490206SBarry Smith for (l=0; l<bs; l++) { 1468b6490206SBarry Smith jj[count++] = bs*a->j[k] + l; 14692593348eSBarry Smith } 14702593348eSBarry Smith } 1471b6490206SBarry Smith } 1472b6490206SBarry Smith } 14736f69ff64SBarry Smith ierr = PetscBinaryWrite(fd,jj,bs2*a->nz,PETSC_INT,PETSC_FALSE);CHKERRQ(ierr); 1474606d414cSSatish Balay ierr = PetscFree(jj);CHKERRQ(ierr); 14752593348eSBarry Smith 14762593348eSBarry Smith /* store nonzero values */ 1477785e854fSJed Brown ierr = PetscMalloc1((a->nz+1)*bs2,&aa);CHKERRQ(ierr); 1478b6490206SBarry Smith count = 0; 1479b6490206SBarry Smith for (i=0; i<a->mbs; i++) { 1480b6490206SBarry Smith for (j=0; j<bs; j++) { 1481b6490206SBarry Smith for (k=a->i[i]; k<a->i[i+1]; k++) { 1482b6490206SBarry Smith for (l=0; l<bs; l++) { 14837e67e3f9SSatish Balay aa[count++] = a->a[bs2*k + l*bs + j]; 1484b6490206SBarry Smith } 1485b6490206SBarry Smith } 1486b6490206SBarry Smith } 1487b6490206SBarry Smith } 14886f69ff64SBarry Smith ierr = PetscBinaryWrite(fd,aa,bs2*a->nz,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr); 1489606d414cSSatish Balay ierr = PetscFree(aa);CHKERRQ(ierr); 1490ce6f0cecSBarry Smith 1491b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetInfoPointer(viewer,&file);CHKERRQ(ierr); 1492ce6f0cecSBarry Smith if (file) { 1493d0f46423SBarry Smith fprintf(file,"-matload_block_size %d\n",(int)A->rmap->bs); 1494ce6f0cecSBarry Smith } 14953a40ed3dSBarry Smith PetscFunctionReturn(0); 14962593348eSBarry Smith } 14972593348eSBarry Smith 14984a2ae208SSatish Balay #undef __FUNCT__ 14994a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqBAIJ_ASCII" 15006849ba73SBarry Smith static PetscErrorCode MatView_SeqBAIJ_ASCII(Mat A,PetscViewer viewer) 15012593348eSBarry Smith { 1502b6490206SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 1503dfbe8321SBarry Smith PetscErrorCode ierr; 1504d0f46423SBarry Smith PetscInt i,j,bs = A->rmap->bs,k,l,bs2=a->bs2; 1505f3ef73ceSBarry Smith PetscViewerFormat format; 15062593348eSBarry Smith 15073a40ed3dSBarry Smith PetscFunctionBegin; 1508b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 1509456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 151077431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 1511fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_MATLAB) { 1512ade3a672SBarry Smith const char *matname; 1513bcd9e38bSBarry Smith Mat aij; 1514ceb03754SKris Buschelman ierr = MatConvert(A,MATSEQAIJ,MAT_INITIAL_MATRIX,&aij);CHKERRQ(ierr); 1515ade3a672SBarry Smith ierr = PetscObjectGetName((PetscObject)A,&matname);CHKERRQ(ierr); 1516ade3a672SBarry Smith ierr = PetscObjectSetName((PetscObject)aij,matname);CHKERRQ(ierr); 1517bcd9e38bSBarry Smith ierr = MatView(aij,viewer);CHKERRQ(ierr); 15186bf464f9SBarry Smith ierr = MatDestroy(&aij);CHKERRQ(ierr); 151904929863SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 152004929863SHong Zhang PetscFunctionReturn(0); 1521fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_COMMON) { 1522d00279f6SBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr); 152344cd7ae7SLois Curfman McInnes for (i=0; i<a->mbs; i++) { 152444cd7ae7SLois Curfman McInnes for (j=0; j<bs; j++) { 152577431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i*bs+j);CHKERRQ(ierr); 152644cd7ae7SLois Curfman McInnes for (k=a->i[i]; k<a->i[i+1]; k++) { 152744cd7ae7SLois Curfman McInnes for (l=0; l<bs; l++) { 1528aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 15290e6d2581SBarry Smith if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) > 0.0 && PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) { 153057622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %gi) ",bs*a->j[k]+l, 153157622a8eSBarry Smith (double)PetscRealPart(a->a[bs2*k + l*bs + j]),(double)PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 15320e6d2581SBarry Smith } else if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) < 0.0 && PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) { 153357622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %gi) ",bs*a->j[k]+l, 153457622a8eSBarry Smith (double)PetscRealPart(a->a[bs2*k + l*bs + j]),-(double)PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 15350e6d2581SBarry Smith } else if (PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) { 153657622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",bs*a->j[k]+l,(double)PetscRealPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 15370ef38995SBarry Smith } 153844cd7ae7SLois Curfman McInnes #else 15390ef38995SBarry Smith if (a->a[bs2*k + l*bs + j] != 0.0) { 154057622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",bs*a->j[k]+l,(double)a->a[bs2*k + l*bs + j]);CHKERRQ(ierr); 15410ef38995SBarry Smith } 154244cd7ae7SLois Curfman McInnes #endif 154344cd7ae7SLois Curfman McInnes } 154444cd7ae7SLois Curfman McInnes } 1545b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 154644cd7ae7SLois Curfman McInnes } 154744cd7ae7SLois Curfman McInnes } 1548d00279f6SBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr); 15490ef38995SBarry Smith } else { 1550d00279f6SBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr); 1551b6490206SBarry Smith for (i=0; i<a->mbs; i++) { 1552b6490206SBarry Smith for (j=0; j<bs; j++) { 155377431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i*bs+j);CHKERRQ(ierr); 1554b6490206SBarry Smith for (k=a->i[i]; k<a->i[i+1]; k++) { 1555b6490206SBarry Smith for (l=0; l<bs; l++) { 1556aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 15570e6d2581SBarry Smith if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) > 0.0) { 155857622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i) ",bs*a->j[k]+l, 155957622a8eSBarry Smith (double)PetscRealPart(a->a[bs2*k + l*bs + j]),(double)PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 15600e6d2581SBarry Smith } else if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) < 0.0) { 156157622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i) ",bs*a->j[k]+l, 156257622a8eSBarry Smith (double)PetscRealPart(a->a[bs2*k + l*bs + j]),-(double)PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 15630ef38995SBarry Smith } else { 156457622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",bs*a->j[k]+l,(double)PetscRealPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 156588685aaeSLois Curfman McInnes } 156688685aaeSLois Curfman McInnes #else 156757622a8eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",bs*a->j[k]+l,(double)a->a[bs2*k + l*bs + j]);CHKERRQ(ierr); 156888685aaeSLois Curfman McInnes #endif 15692593348eSBarry Smith } 15702593348eSBarry Smith } 1571b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 15722593348eSBarry Smith } 15732593348eSBarry Smith } 1574d00279f6SBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr); 1575b6490206SBarry Smith } 1576b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 15773a40ed3dSBarry Smith PetscFunctionReturn(0); 15782593348eSBarry Smith } 15792593348eSBarry Smith 15809804daf3SBarry Smith #include <petscdraw.h> 15814a2ae208SSatish Balay #undef __FUNCT__ 15824a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqBAIJ_Draw_Zoom" 15836849ba73SBarry Smith static PetscErrorCode MatView_SeqBAIJ_Draw_Zoom(PetscDraw draw,void *Aa) 15843270192aSSatish Balay { 158577ed5343SBarry Smith Mat A = (Mat) Aa; 15863270192aSSatish Balay Mat_SeqBAIJ *a=(Mat_SeqBAIJ*)A->data; 15876849ba73SBarry Smith PetscErrorCode ierr; 1588d0f46423SBarry Smith PetscInt row,i,j,k,l,mbs=a->mbs,color,bs=A->rmap->bs,bs2=a->bs2; 15890e6d2581SBarry Smith PetscReal xl,yl,xr,yr,x_l,x_r,y_l,y_r; 15903f1db9ecSBarry Smith MatScalar *aa; 1591b0a32e0cSBarry Smith PetscViewer viewer; 1592b3e7f47fSJed Brown PetscViewerFormat format; 15933270192aSSatish Balay 15943a40ed3dSBarry Smith PetscFunctionBegin; 159577ed5343SBarry Smith ierr = PetscObjectQuery((PetscObject)A,"Zoomviewer",(PetscObject*)&viewer);CHKERRQ(ierr); 1596b3e7f47fSJed Brown ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 159777ed5343SBarry Smith 1598b0a32e0cSBarry Smith ierr = PetscDrawGetCoordinates(draw,&xl,&yl,&xr,&yr);CHKERRQ(ierr); 159977ed5343SBarry Smith 16003270192aSSatish Balay /* loop over matrix elements drawing boxes */ 1601b3e7f47fSJed Brown 1602b3e7f47fSJed Brown if (format != PETSC_VIEWER_DRAW_CONTOUR) { 1603b0a32e0cSBarry Smith color = PETSC_DRAW_BLUE; 16043270192aSSatish Balay for (i=0,row=0; i<mbs; i++,row+=bs) { 16053270192aSSatish Balay for (j=a->i[i]; j<a->i[i+1]; j++) { 1606d0f46423SBarry Smith y_l = A->rmap->N - row - 1.0; y_r = y_l + 1.0; 16073270192aSSatish Balay x_l = a->j[j]*bs; x_r = x_l + 1.0; 16083270192aSSatish Balay aa = a->a + j*bs2; 16093270192aSSatish Balay for (k=0; k<bs; k++) { 16103270192aSSatish Balay for (l=0; l<bs; l++) { 16110e6d2581SBarry Smith if (PetscRealPart(*aa++) >= 0.) continue; 1612b0a32e0cSBarry Smith ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr); 16133270192aSSatish Balay } 16143270192aSSatish Balay } 16153270192aSSatish Balay } 16163270192aSSatish Balay } 1617b0a32e0cSBarry Smith color = PETSC_DRAW_CYAN; 16183270192aSSatish Balay for (i=0,row=0; i<mbs; i++,row+=bs) { 16193270192aSSatish Balay for (j=a->i[i]; j<a->i[i+1]; j++) { 1620d0f46423SBarry Smith y_l = A->rmap->N - row - 1.0; y_r = y_l + 1.0; 16213270192aSSatish Balay x_l = a->j[j]*bs; x_r = x_l + 1.0; 16223270192aSSatish Balay aa = a->a + j*bs2; 16233270192aSSatish Balay for (k=0; k<bs; k++) { 16243270192aSSatish Balay for (l=0; l<bs; l++) { 16250e6d2581SBarry Smith if (PetscRealPart(*aa++) != 0.) continue; 1626b0a32e0cSBarry Smith ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr); 16273270192aSSatish Balay } 16283270192aSSatish Balay } 16293270192aSSatish Balay } 16303270192aSSatish Balay } 1631b0a32e0cSBarry Smith color = PETSC_DRAW_RED; 16323270192aSSatish Balay for (i=0,row=0; i<mbs; i++,row+=bs) { 16333270192aSSatish Balay for (j=a->i[i]; j<a->i[i+1]; j++) { 1634d0f46423SBarry Smith y_l = A->rmap->N - row - 1.0; y_r = y_l + 1.0; 16353270192aSSatish Balay x_l = a->j[j]*bs; x_r = x_l + 1.0; 16363270192aSSatish Balay aa = a->a + j*bs2; 16373270192aSSatish Balay for (k=0; k<bs; k++) { 16383270192aSSatish Balay for (l=0; l<bs; l++) { 16390e6d2581SBarry Smith if (PetscRealPart(*aa++) <= 0.) continue; 1640b0a32e0cSBarry Smith ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr); 16413270192aSSatish Balay } 16423270192aSSatish Balay } 16433270192aSSatish Balay } 16443270192aSSatish Balay } 1645b3e7f47fSJed Brown } else { 1646b3e7f47fSJed Brown /* use contour shading to indicate magnitude of values */ 1647b3e7f47fSJed Brown /* first determine max of all nonzero values */ 1648b3e7f47fSJed Brown PetscDraw popup; 1649b3e7f47fSJed Brown PetscReal scale,maxv = 0.0; 1650b3e7f47fSJed Brown 1651b3e7f47fSJed Brown for (i=0; i<a->nz*a->bs2; i++) { 1652b3e7f47fSJed Brown if (PetscAbsScalar(a->a[i]) > maxv) maxv = PetscAbsScalar(a->a[i]); 1653b3e7f47fSJed Brown } 1654b3e7f47fSJed Brown scale = (245.0 - PETSC_DRAW_BASIC_COLORS)/maxv; 1655b3e7f47fSJed Brown ierr = PetscDrawGetPopup(draw,&popup);CHKERRQ(ierr); 165626fbe8dcSKarl Rupp if (popup) { 165726fbe8dcSKarl Rupp ierr = PetscDrawScalePopup(popup,0.0,maxv);CHKERRQ(ierr); 165826fbe8dcSKarl Rupp } 1659b3e7f47fSJed Brown for (i=0,row=0; i<mbs; i++,row+=bs) { 1660b3e7f47fSJed Brown for (j=a->i[i]; j<a->i[i+1]; j++) { 1661b3e7f47fSJed Brown y_l = A->rmap->N - row - 1.0; y_r = y_l + 1.0; 1662b3e7f47fSJed Brown x_l = a->j[j]*bs; x_r = x_l + 1.0; 1663b3e7f47fSJed Brown aa = a->a + j*bs2; 1664b3e7f47fSJed Brown for (k=0; k<bs; k++) { 1665b3e7f47fSJed Brown for (l=0; l<bs; l++) { 1666b3e7f47fSJed Brown color = PETSC_DRAW_BASIC_COLORS + (PetscInt)(scale*PetscAbsScalar(*aa++)); 1667b3e7f47fSJed Brown ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr); 1668b3e7f47fSJed Brown } 1669b3e7f47fSJed Brown } 1670b3e7f47fSJed Brown } 1671b3e7f47fSJed Brown } 1672b3e7f47fSJed Brown } 167377ed5343SBarry Smith PetscFunctionReturn(0); 167477ed5343SBarry Smith } 16753270192aSSatish Balay 16764a2ae208SSatish Balay #undef __FUNCT__ 16774a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqBAIJ_Draw" 16786849ba73SBarry Smith static PetscErrorCode MatView_SeqBAIJ_Draw(Mat A,PetscViewer viewer) 167977ed5343SBarry Smith { 1680dfbe8321SBarry Smith PetscErrorCode ierr; 16810e6d2581SBarry Smith PetscReal xl,yl,xr,yr,w,h; 1682b0a32e0cSBarry Smith PetscDraw draw; 1683ace3abfcSBarry Smith PetscBool isnull; 16843270192aSSatish Balay 168577ed5343SBarry Smith PetscFunctionBegin; 1686b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 1687b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 168877ed5343SBarry Smith 168977ed5343SBarry Smith ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",(PetscObject)viewer);CHKERRQ(ierr); 1690d0f46423SBarry Smith xr = A->cmap->n; yr = A->rmap->N; h = yr/10.0; w = xr/10.0; 169177ed5343SBarry Smith xr += w; yr += h; xl = -w; yl = -h; 1692b0a32e0cSBarry Smith ierr = PetscDrawSetCoordinates(draw,xl,yl,xr,yr);CHKERRQ(ierr); 1693b0a32e0cSBarry Smith ierr = PetscDrawZoom(draw,MatView_SeqBAIJ_Draw_Zoom,A);CHKERRQ(ierr); 16940298fd71SBarry Smith ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",NULL);CHKERRQ(ierr); 16953a40ed3dSBarry Smith PetscFunctionReturn(0); 16963270192aSSatish Balay } 16973270192aSSatish Balay 16984a2ae208SSatish Balay #undef __FUNCT__ 16994a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqBAIJ" 1700dfbe8321SBarry Smith PetscErrorCode MatView_SeqBAIJ(Mat A,PetscViewer viewer) 17012593348eSBarry Smith { 1702dfbe8321SBarry Smith PetscErrorCode ierr; 1703ace3abfcSBarry Smith PetscBool iascii,isbinary,isdraw; 17042593348eSBarry Smith 17053a40ed3dSBarry Smith PetscFunctionBegin; 1706251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 1707251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 1708251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 170932077d6dSBarry Smith if (iascii) { 17103a40ed3dSBarry Smith ierr = MatView_SeqBAIJ_ASCII(A,viewer);CHKERRQ(ierr); 17110f5bd95cSBarry Smith } else if (isbinary) { 17123a40ed3dSBarry Smith ierr = MatView_SeqBAIJ_Binary(A,viewer);CHKERRQ(ierr); 17130f5bd95cSBarry Smith } else if (isdraw) { 17143a40ed3dSBarry Smith ierr = MatView_SeqBAIJ_Draw(A,viewer);CHKERRQ(ierr); 17155cd90555SBarry Smith } else { 1716a5e6ed63SBarry Smith Mat B; 1717ceb03754SKris Buschelman ierr = MatConvert(A,MATSEQAIJ,MAT_INITIAL_MATRIX,&B);CHKERRQ(ierr); 1718a5e6ed63SBarry Smith ierr = MatView(B,viewer);CHKERRQ(ierr); 17196bf464f9SBarry Smith ierr = MatDestroy(&B);CHKERRQ(ierr); 17202593348eSBarry Smith } 17213a40ed3dSBarry Smith PetscFunctionReturn(0); 17222593348eSBarry Smith } 1723b6490206SBarry Smith 1724cd0e1443SSatish Balay 17254a2ae208SSatish Balay #undef __FUNCT__ 17264a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_SeqBAIJ" 1727c1ac3661SBarry Smith PetscErrorCode MatGetValues_SeqBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],PetscScalar v[]) 1728cd0e1443SSatish Balay { 1729cd0e1443SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 1730c1ac3661SBarry Smith PetscInt *rp,k,low,high,t,row,nrow,i,col,l,*aj = a->j; 1731c1ac3661SBarry Smith PetscInt *ai = a->i,*ailen = a->ilen; 1732d0f46423SBarry Smith PetscInt brow,bcol,ridx,cidx,bs=A->rmap->bs,bs2=a->bs2; 173397e567efSBarry Smith MatScalar *ap,*aa = a->a; 1734cd0e1443SSatish Balay 17353a40ed3dSBarry Smith PetscFunctionBegin; 17362d61bbb3SSatish Balay for (k=0; k<m; k++) { /* loop over rows */ 1737cd0e1443SSatish Balay row = im[k]; brow = row/bs; 1738e32f2f54SBarry Smith if (row < 0) {v += n; continue;} /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); */ 1739e32f2f54SBarry Smith if (row >= A->rmap->N) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %D too large", row); 17402d61bbb3SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; 17412c3acbe9SBarry Smith nrow = ailen[brow]; 17422d61bbb3SSatish Balay for (l=0; l<n; l++) { /* loop over columns */ 1743e32f2f54SBarry Smith if (in[l] < 0) {v++; continue;} /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); */ 1744e32f2f54SBarry Smith if (in[l] >= A->cmap->n) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column %D too large", in[l]); 17452d61bbb3SSatish Balay col = in[l]; 17462d61bbb3SSatish Balay bcol = col/bs; 17472d61bbb3SSatish Balay cidx = col%bs; 17482d61bbb3SSatish Balay ridx = row%bs; 17492d61bbb3SSatish Balay high = nrow; 17502d61bbb3SSatish Balay low = 0; /* assume unsorted */ 17512d61bbb3SSatish Balay while (high-low > 5) { 1752cd0e1443SSatish Balay t = (low+high)/2; 1753cd0e1443SSatish Balay if (rp[t] > bcol) high = t; 1754cd0e1443SSatish Balay else low = t; 1755cd0e1443SSatish Balay } 1756cd0e1443SSatish Balay for (i=low; i<high; i++) { 1757cd0e1443SSatish Balay if (rp[i] > bcol) break; 1758cd0e1443SSatish Balay if (rp[i] == bcol) { 17592d61bbb3SSatish Balay *v++ = ap[bs2*i+bs*cidx+ridx]; 17602d61bbb3SSatish Balay goto finished; 1761cd0e1443SSatish Balay } 1762cd0e1443SSatish Balay } 176397e567efSBarry Smith *v++ = 0.0; 17642d61bbb3SSatish Balay finished:; 1765cd0e1443SSatish Balay } 1766cd0e1443SSatish Balay } 17673a40ed3dSBarry Smith PetscFunctionReturn(0); 1768cd0e1443SSatish Balay } 1769cd0e1443SSatish Balay 17704a2ae208SSatish Balay #undef __FUNCT__ 17714a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_SeqBAIJ" 1772dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is) 177392c4ed94SBarry Smith { 177492c4ed94SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 1775e2ee6c50SBarry Smith PetscInt *rp,k,low,high,t,ii,jj,row,nrow,i,col,l,rmax,N,lastcol = -1; 1776c1ac3661SBarry Smith PetscInt *imax=a->imax,*ai=a->i,*ailen=a->ilen; 17776849ba73SBarry Smith PetscErrorCode ierr; 1778d0f46423SBarry Smith PetscInt *aj =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs,stepval; 1779ace3abfcSBarry Smith PetscBool roworiented=a->roworiented; 1780dd6ea824SBarry Smith const PetscScalar *value = v; 1781f15d580aSBarry Smith MatScalar *ap,*aa = a->a,*bap; 178292c4ed94SBarry Smith 17833a40ed3dSBarry Smith PetscFunctionBegin; 17840e324ae4SSatish Balay if (roworiented) { 17850e324ae4SSatish Balay stepval = (n-1)*bs; 17860e324ae4SSatish Balay } else { 17870e324ae4SSatish Balay stepval = (m-1)*bs; 17880e324ae4SSatish Balay } 178992c4ed94SBarry Smith for (k=0; k<m; k++) { /* loop over added rows */ 179092c4ed94SBarry Smith row = im[k]; 17915ef9f2a5SBarry Smith if (row < 0) continue; 17922515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 17932f7d4af7SBarry Smith if (row >= a->mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block row index too large %D max %D",row,a->mbs-1); 179492c4ed94SBarry Smith #endif 179592c4ed94SBarry Smith rp = aj + ai[row]; 179692c4ed94SBarry Smith ap = aa + bs2*ai[row]; 179792c4ed94SBarry Smith rmax = imax[row]; 179892c4ed94SBarry Smith nrow = ailen[row]; 179992c4ed94SBarry Smith low = 0; 1800c71e6ed7SBarry Smith high = nrow; 180192c4ed94SBarry Smith for (l=0; l<n; l++) { /* loop over added columns */ 18025ef9f2a5SBarry Smith if (in[l] < 0) continue; 18032515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 18042f7d4af7SBarry Smith if (in[l] >= a->nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block column index too large %D max %D",in[l],a->nbs-1); 180592c4ed94SBarry Smith #endif 180692c4ed94SBarry Smith col = in[l]; 180792c4ed94SBarry Smith if (roworiented) { 180853ef36baSBarry Smith value = v + (k*(stepval+bs) + l)*bs; 18090e324ae4SSatish Balay } else { 181053ef36baSBarry Smith value = v + (l*(stepval+bs) + k)*bs; 181192c4ed94SBarry Smith } 181226fbe8dcSKarl Rupp if (col <= lastcol) low = 0; 181326fbe8dcSKarl Rupp else high = nrow; 1814e2ee6c50SBarry Smith lastcol = col; 181592c4ed94SBarry Smith while (high-low > 7) { 181692c4ed94SBarry Smith t = (low+high)/2; 181792c4ed94SBarry Smith if (rp[t] > col) high = t; 181892c4ed94SBarry Smith else low = t; 181992c4ed94SBarry Smith } 182092c4ed94SBarry Smith for (i=low; i<high; i++) { 182192c4ed94SBarry Smith if (rp[i] > col) break; 182292c4ed94SBarry Smith if (rp[i] == col) { 18238a84c255SSatish Balay bap = ap + bs2*i; 18240e324ae4SSatish Balay if (roworiented) { 18258a84c255SSatish Balay if (is == ADD_VALUES) { 1826dd9472c6SBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 1827dd9472c6SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 18288a84c255SSatish Balay bap[jj] += *value++; 1829dd9472c6SBarry Smith } 1830dd9472c6SBarry Smith } 18310e324ae4SSatish Balay } else { 1832dd9472c6SBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 1833dd9472c6SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 18340e324ae4SSatish Balay bap[jj] = *value++; 18358a84c255SSatish Balay } 1836dd9472c6SBarry Smith } 1837dd9472c6SBarry Smith } 18380e324ae4SSatish Balay } else { 18390e324ae4SSatish Balay if (is == ADD_VALUES) { 184053ef36baSBarry Smith for (ii=0; ii<bs; ii++,value+=bs+stepval) { 1841dd9472c6SBarry Smith for (jj=0; jj<bs; jj++) { 184253ef36baSBarry Smith bap[jj] += value[jj]; 1843dd9472c6SBarry Smith } 184453ef36baSBarry Smith bap += bs; 1845dd9472c6SBarry Smith } 18460e324ae4SSatish Balay } else { 184753ef36baSBarry Smith for (ii=0; ii<bs; ii++,value+=bs+stepval) { 1848dd9472c6SBarry Smith for (jj=0; jj<bs; jj++) { 184953ef36baSBarry Smith bap[jj] = value[jj]; 18500e324ae4SSatish Balay } 185153ef36baSBarry Smith bap += bs; 18528a84c255SSatish Balay } 1853dd9472c6SBarry Smith } 1854dd9472c6SBarry Smith } 1855f1241b54SBarry Smith goto noinsert2; 185692c4ed94SBarry Smith } 185792c4ed94SBarry Smith } 185889280ab3SLois Curfman McInnes if (nonew == 1) goto noinsert2; 18592f7d4af7SBarry Smith if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new blocked index new nonzero block (%D, %D) in the matrix", row, col); 1860fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 1861c03d1d03SSatish Balay N = nrow++ - 1; high++; 186292c4ed94SBarry Smith /* shift up all the later entries in this row */ 186392c4ed94SBarry Smith for (ii=N; ii>=i; ii--) { 186492c4ed94SBarry Smith rp[ii+1] = rp[ii]; 1865549d3d68SSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); 186692c4ed94SBarry Smith } 1867549d3d68SSatish Balay if (N >= i) { 1868549d3d68SSatish Balay ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr); 1869549d3d68SSatish Balay } 187092c4ed94SBarry Smith rp[i] = col; 18718a84c255SSatish Balay bap = ap + bs2*i; 18720e324ae4SSatish Balay if (roworiented) { 1873dd9472c6SBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 1874dd9472c6SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 18750e324ae4SSatish Balay bap[jj] = *value++; 1876dd9472c6SBarry Smith } 1877dd9472c6SBarry Smith } 18780e324ae4SSatish Balay } else { 1879dd9472c6SBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 1880dd9472c6SBarry Smith for (jj=0; jj<bs; jj++) { 18810e324ae4SSatish Balay *bap++ = *value++; 18820e324ae4SSatish Balay } 1883dd9472c6SBarry Smith } 1884dd9472c6SBarry Smith } 1885f1241b54SBarry Smith noinsert2:; 188692c4ed94SBarry Smith low = i; 188792c4ed94SBarry Smith } 188892c4ed94SBarry Smith ailen[row] = nrow; 188992c4ed94SBarry Smith } 18903a40ed3dSBarry Smith PetscFunctionReturn(0); 189192c4ed94SBarry Smith } 189226e093fcSHong Zhang 18934a2ae208SSatish Balay #undef __FUNCT__ 18944a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_SeqBAIJ" 1895dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_SeqBAIJ(Mat A,MatAssemblyType mode) 1896584200bdSSatish Balay { 1897584200bdSSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 1898c1ac3661SBarry Smith PetscInt fshift = 0,i,j,*ai = a->i,*aj = a->j,*imax = a->imax; 1899d0f46423SBarry Smith PetscInt m = A->rmap->N,*ip,N,*ailen = a->ilen; 19006849ba73SBarry Smith PetscErrorCode ierr; 1901c1ac3661SBarry Smith PetscInt mbs = a->mbs,bs2 = a->bs2,rmax = 0; 19023f1db9ecSBarry Smith MatScalar *aa = a->a,*ap; 19033447b6efSHong Zhang PetscReal ratio=0.6; 1904584200bdSSatish Balay 19053a40ed3dSBarry Smith PetscFunctionBegin; 19063a40ed3dSBarry Smith if (mode == MAT_FLUSH_ASSEMBLY) PetscFunctionReturn(0); 1907584200bdSSatish Balay 190843ee02c3SBarry Smith if (m) rmax = ailen[0]; 1909584200bdSSatish Balay for (i=1; i<mbs; i++) { 1910584200bdSSatish Balay /* move each row back by the amount of empty slots (fshift) before it*/ 1911584200bdSSatish Balay fshift += imax[i-1] - ailen[i-1]; 1912d402145bSBarry Smith rmax = PetscMax(rmax,ailen[i]); 1913584200bdSSatish Balay if (fshift) { 1914a7c10996SSatish Balay ip = aj + ai[i]; ap = aa + bs2*ai[i]; 1915584200bdSSatish Balay N = ailen[i]; 1916584200bdSSatish Balay for (j=0; j<N; j++) { 1917584200bdSSatish Balay ip[j-fshift] = ip[j]; 191826fbe8dcSKarl Rupp 1919549d3d68SSatish Balay ierr = PetscMemcpy(ap+(j-fshift)*bs2,ap+j*bs2,bs2*sizeof(MatScalar));CHKERRQ(ierr); 1920584200bdSSatish Balay } 1921584200bdSSatish Balay } 1922584200bdSSatish Balay ai[i] = ai[i-1] + ailen[i-1]; 1923584200bdSSatish Balay } 1924584200bdSSatish Balay if (mbs) { 1925584200bdSSatish Balay fshift += imax[mbs-1] - ailen[mbs-1]; 1926584200bdSSatish Balay ai[mbs] = ai[mbs-1] + ailen[mbs-1]; 1927584200bdSSatish Balay } 19287c565772SBarry Smith 1929584200bdSSatish Balay /* reset ilen and imax for each row */ 19307c565772SBarry Smith a->nonzerorowcnt = 0; 1931584200bdSSatish Balay for (i=0; i<mbs; i++) { 1932584200bdSSatish Balay ailen[i] = imax[i] = ai[i+1] - ai[i]; 19337c565772SBarry Smith a->nonzerorowcnt += ((ai[i+1] - ai[i]) > 0); 1934584200bdSSatish Balay } 1935a7c10996SSatish Balay a->nz = ai[mbs]; 1936584200bdSSatish Balay 1937584200bdSSatish Balay /* diagonals may have moved, so kill the diagonal pointers */ 1938b01c7715SBarry Smith a->idiagvalid = PETSC_FALSE; 1939584200bdSSatish Balay if (fshift && a->diag) { 1940606d414cSSatish Balay ierr = PetscFree(a->diag);CHKERRQ(ierr); 19413bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)A,-(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr); 1942584200bdSSatish Balay a->diag = 0; 1943584200bdSSatish Balay } 194465e19b50SBarry Smith if (fshift && a->nounused == -1) SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_PLIB, "Unused space detected in matrix: %D X %D block size %D, %D unneeded", m, A->cmap->n, A->rmap->bs, fshift*bs2); 1945d0f46423SBarry Smith ierr = PetscInfo5(A,"Matrix size: %D X %D, block size %D; storage space: %D unneeded, %D used\n",m,A->cmap->n,A->rmap->bs,fshift*bs2,a->nz*bs2);CHKERRQ(ierr); 1946ae15b995SBarry Smith ierr = PetscInfo1(A,"Number of mallocs during MatSetValues is %D\n",a->reallocs);CHKERRQ(ierr); 1947ae15b995SBarry Smith ierr = PetscInfo1(A,"Most nonzeros blocks in any row is %D\n",rmax);CHKERRQ(ierr); 194826fbe8dcSKarl Rupp 19498e58a170SBarry Smith A->info.mallocs += a->reallocs; 1950e2f3b5e9SSatish Balay a->reallocs = 0; 19510e6d2581SBarry Smith A->info.nz_unneeded = (PetscReal)fshift*bs2; 1952647a6520SHong Zhang a->rmax = rmax; 1953cf4441caSHong Zhang 195411e456e1SBarry Smith ierr = MatCheckCompressedRow(A,a->nonzerorowcnt,&a->compressedrow,a->i,mbs,ratio);CHKERRQ(ierr); 19553a40ed3dSBarry Smith PetscFunctionReturn(0); 1956584200bdSSatish Balay } 1957584200bdSSatish Balay 1958bea157c4SSatish Balay /* 1959bea157c4SSatish Balay This function returns an array of flags which indicate the locations of contiguous 1960bea157c4SSatish Balay blocks that should be zeroed. for eg: if bs = 3 and is = [0,1,2,3,5,6,7,8,9] 1961bea157c4SSatish Balay then the resulting sizes = [3,1,1,3,1] correspondig to sets [(0,1,2),(3),(5),(6,7,8),(9)] 1962bea157c4SSatish Balay Assume: sizes should be long enough to hold all the values. 1963bea157c4SSatish Balay */ 19644a2ae208SSatish Balay #undef __FUNCT__ 19654a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_SeqBAIJ_Check_Blocks" 1966c1ac3661SBarry Smith static PetscErrorCode MatZeroRows_SeqBAIJ_Check_Blocks(PetscInt idx[],PetscInt n,PetscInt bs,PetscInt sizes[], PetscInt *bs_max) 1967d9b7c43dSSatish Balay { 1968c1ac3661SBarry Smith PetscInt i,j,k,row; 1969ace3abfcSBarry Smith PetscBool flg; 19703a40ed3dSBarry Smith 1971433994e6SBarry Smith PetscFunctionBegin; 1972bea157c4SSatish Balay for (i=0,j=0; i<n; j++) { 1973bea157c4SSatish Balay row = idx[i]; 1974bea157c4SSatish Balay if (row%bs!=0) { /* Not the begining of a block */ 1975bea157c4SSatish Balay sizes[j] = 1; 1976bea157c4SSatish Balay i++; 1977e4fda26cSSatish Balay } else if (i+bs > n) { /* complete block doesn't exist (at idx end) */ 1978bea157c4SSatish Balay sizes[j] = 1; /* Also makes sure atleast 'bs' values exist for next else */ 1979bea157c4SSatish Balay i++; 1980bea157c4SSatish Balay } else { /* Begining of the block, so check if the complete block exists */ 1981bea157c4SSatish Balay flg = PETSC_TRUE; 1982bea157c4SSatish Balay for (k=1; k<bs; k++) { 1983bea157c4SSatish Balay if (row+k != idx[i+k]) { /* break in the block */ 1984bea157c4SSatish Balay flg = PETSC_FALSE; 1985bea157c4SSatish Balay break; 1986d9b7c43dSSatish Balay } 1987bea157c4SSatish Balay } 1988abc0a331SBarry Smith if (flg) { /* No break in the bs */ 1989bea157c4SSatish Balay sizes[j] = bs; 1990bea157c4SSatish Balay i += bs; 1991bea157c4SSatish Balay } else { 1992bea157c4SSatish Balay sizes[j] = 1; 1993bea157c4SSatish Balay i++; 1994bea157c4SSatish Balay } 1995bea157c4SSatish Balay } 1996bea157c4SSatish Balay } 1997bea157c4SSatish Balay *bs_max = j; 19983a40ed3dSBarry Smith PetscFunctionReturn(0); 1999d9b7c43dSSatish Balay } 2000d9b7c43dSSatish Balay 20014a2ae208SSatish Balay #undef __FUNCT__ 20024a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_SeqBAIJ" 20032b40b63fSBarry Smith PetscErrorCode MatZeroRows_SeqBAIJ(Mat A,PetscInt is_n,const PetscInt is_idx[],PetscScalar diag,Vec x, Vec b) 2004d9b7c43dSSatish Balay { 2005d9b7c43dSSatish Balay Mat_SeqBAIJ *baij=(Mat_SeqBAIJ*)A->data; 2006dfbe8321SBarry Smith PetscErrorCode ierr; 2007f4df32b1SMatthew Knepley PetscInt i,j,k,count,*rows; 2008d0f46423SBarry Smith PetscInt bs=A->rmap->bs,bs2=baij->bs2,*sizes,row,bs_max; 200987828ca2SBarry Smith PetscScalar zero = 0.0; 20103f1db9ecSBarry Smith MatScalar *aa; 201197b48c8fSBarry Smith const PetscScalar *xx; 201297b48c8fSBarry Smith PetscScalar *bb; 2013d9b7c43dSSatish Balay 20143a40ed3dSBarry Smith PetscFunctionBegin; 201597b48c8fSBarry Smith /* fix right hand side if needed */ 201697b48c8fSBarry Smith if (x && b) { 201797b48c8fSBarry Smith ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr); 201897b48c8fSBarry Smith ierr = VecGetArray(b,&bb);CHKERRQ(ierr); 201997b48c8fSBarry Smith for (i=0; i<is_n; i++) { 202097b48c8fSBarry Smith bb[is_idx[i]] = diag*xx[is_idx[i]]; 202197b48c8fSBarry Smith } 202297b48c8fSBarry Smith ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr); 202397b48c8fSBarry Smith ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr); 202497b48c8fSBarry Smith } 202597b48c8fSBarry Smith 2026d9b7c43dSSatish Balay /* Make a copy of the IS and sort it */ 2027bea157c4SSatish Balay /* allocate memory for rows,sizes */ 2028dcca6d9dSJed Brown ierr = PetscMalloc2(is_n,&rows,2*is_n,&sizes);CHKERRQ(ierr); 2029bea157c4SSatish Balay 2030563b5814SBarry Smith /* copy IS values to rows, and sort them */ 203126fbe8dcSKarl Rupp for (i=0; i<is_n; i++) rows[i] = is_idx[i]; 2032bea157c4SSatish Balay ierr = PetscSortInt(is_n,rows);CHKERRQ(ierr); 203397b48c8fSBarry Smith 2034a9817697SBarry Smith if (baij->keepnonzeropattern) { 203526fbe8dcSKarl Rupp for (i=0; i<is_n; i++) sizes[i] = 1; 2036dffd3267SBarry Smith bs_max = is_n; 2037dffd3267SBarry Smith } else { 2038bea157c4SSatish Balay ierr = MatZeroRows_SeqBAIJ_Check_Blocks(rows,is_n,bs,sizes,&bs_max);CHKERRQ(ierr); 2039e56f5c9eSBarry Smith A->nonzerostate++; 2040dffd3267SBarry Smith } 2041bea157c4SSatish Balay 2042bea157c4SSatish Balay for (i=0,j=0; i<bs_max; j+=sizes[i],i++) { 2043bea157c4SSatish Balay row = rows[j]; 2044e32f2f54SBarry Smith if (row < 0 || row > A->rmap->N) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"row %D out of range",row); 2045bea157c4SSatish Balay count = (baij->i[row/bs +1] - baij->i[row/bs])*bs; 2046b31fbe3bSSatish Balay aa = ((MatScalar*)(baij->a)) + baij->i[row/bs]*bs2 + (row%bs); 2047a9817697SBarry Smith if (sizes[i] == bs && !baij->keepnonzeropattern) { 2048d4a378daSJed Brown if (diag != (PetscScalar)0.0) { 2049bea157c4SSatish Balay if (baij->ilen[row/bs] > 0) { 2050bea157c4SSatish Balay baij->ilen[row/bs] = 1; 2051bea157c4SSatish Balay baij->j[baij->i[row/bs]] = row/bs; 205226fbe8dcSKarl Rupp 2053bea157c4SSatish Balay ierr = PetscMemzero(aa,count*bs*sizeof(MatScalar));CHKERRQ(ierr); 2054a07cd24cSSatish Balay } 2055563b5814SBarry Smith /* Now insert all the diagonal values for this bs */ 2056bea157c4SSatish Balay for (k=0; k<bs; k++) { 2057f4df32b1SMatthew Knepley ierr = (*A->ops->setvalues)(A,1,rows+j+k,1,rows+j+k,&diag,INSERT_VALUES);CHKERRQ(ierr); 2058bea157c4SSatish Balay } 2059f4df32b1SMatthew Knepley } else { /* (diag == 0.0) */ 2060bea157c4SSatish Balay baij->ilen[row/bs] = 0; 2061f4df32b1SMatthew Knepley } /* end (diag == 0.0) */ 2062bea157c4SSatish Balay } else { /* (sizes[i] != bs) */ 2063aa482453SBarry Smith #if defined(PETSC_USE_DEBUG) 2064e32f2f54SBarry Smith if (sizes[i] != 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Internal Error. Value should be 1"); 2065bea157c4SSatish Balay #endif 2066bea157c4SSatish Balay for (k=0; k<count; k++) { 2067d9b7c43dSSatish Balay aa[0] = zero; 2068d9b7c43dSSatish Balay aa += bs; 2069d9b7c43dSSatish Balay } 2070d4a378daSJed Brown if (diag != (PetscScalar)0.0) { 2071f4df32b1SMatthew Knepley ierr = (*A->ops->setvalues)(A,1,rows+j,1,rows+j,&diag,INSERT_VALUES);CHKERRQ(ierr); 2072d9b7c43dSSatish Balay } 2073d9b7c43dSSatish Balay } 2074bea157c4SSatish Balay } 2075bea157c4SSatish Balay 2076fca92195SBarry Smith ierr = PetscFree2(rows,sizes);CHKERRQ(ierr); 20779a8dea36SBarry Smith ierr = MatAssemblyEnd_SeqBAIJ(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 20783a40ed3dSBarry Smith PetscFunctionReturn(0); 2079d9b7c43dSSatish Balay } 20801c351548SSatish Balay 20814a2ae208SSatish Balay #undef __FUNCT__ 208297b48c8fSBarry Smith #define __FUNCT__ "MatZeroRowsColumns_SeqBAIJ" 208397b48c8fSBarry Smith PetscErrorCode MatZeroRowsColumns_SeqBAIJ(Mat A,PetscInt is_n,const PetscInt is_idx[],PetscScalar diag,Vec x, Vec b) 208497b48c8fSBarry Smith { 208597b48c8fSBarry Smith Mat_SeqBAIJ *baij=(Mat_SeqBAIJ*)A->data; 208697b48c8fSBarry Smith PetscErrorCode ierr; 208797b48c8fSBarry Smith PetscInt i,j,k,count; 208897b48c8fSBarry Smith PetscInt bs =A->rmap->bs,bs2=baij->bs2,row,col; 208997b48c8fSBarry Smith PetscScalar zero = 0.0; 209097b48c8fSBarry Smith MatScalar *aa; 209197b48c8fSBarry Smith const PetscScalar *xx; 209297b48c8fSBarry Smith PetscScalar *bb; 209356777dd2SBarry Smith PetscBool *zeroed,vecs = PETSC_FALSE; 209497b48c8fSBarry Smith 209597b48c8fSBarry Smith PetscFunctionBegin; 209697b48c8fSBarry Smith /* fix right hand side if needed */ 209797b48c8fSBarry Smith if (x && b) { 209897b48c8fSBarry Smith ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr); 209997b48c8fSBarry Smith ierr = VecGetArray(b,&bb);CHKERRQ(ierr); 210056777dd2SBarry Smith vecs = PETSC_TRUE; 210197b48c8fSBarry Smith } 210297b48c8fSBarry Smith 210397b48c8fSBarry Smith /* zero the columns */ 21041795a4d1SJed Brown ierr = PetscCalloc1(A->rmap->n,&zeroed);CHKERRQ(ierr); 210597b48c8fSBarry Smith for (i=0; i<is_n; i++) { 210697b48c8fSBarry Smith if (is_idx[i] < 0 || is_idx[i] >= A->rmap->N) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"row %D out of range",is_idx[i]); 210797b48c8fSBarry Smith zeroed[is_idx[i]] = PETSC_TRUE; 210897b48c8fSBarry Smith } 210997b48c8fSBarry Smith for (i=0; i<A->rmap->N; i++) { 211097b48c8fSBarry Smith if (!zeroed[i]) { 211197b48c8fSBarry Smith row = i/bs; 211297b48c8fSBarry Smith for (j=baij->i[row]; j<baij->i[row+1]; j++) { 211397b48c8fSBarry Smith for (k=0; k<bs; k++) { 211497b48c8fSBarry Smith col = bs*baij->j[j] + k; 211597b48c8fSBarry Smith if (zeroed[col]) { 211697b48c8fSBarry Smith aa = ((MatScalar*)(baij->a)) + j*bs2 + (i%bs) + bs*k; 211756777dd2SBarry Smith if (vecs) bb[i] -= aa[0]*xx[col]; 211897b48c8fSBarry Smith aa[0] = 0.0; 211997b48c8fSBarry Smith } 212097b48c8fSBarry Smith } 212197b48c8fSBarry Smith } 212256777dd2SBarry Smith } else if (vecs) bb[i] = diag*xx[i]; 212397b48c8fSBarry Smith } 212497b48c8fSBarry Smith ierr = PetscFree(zeroed);CHKERRQ(ierr); 212556777dd2SBarry Smith if (vecs) { 212656777dd2SBarry Smith ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr); 212756777dd2SBarry Smith ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr); 212856777dd2SBarry Smith } 212997b48c8fSBarry Smith 213097b48c8fSBarry Smith /* zero the rows */ 213197b48c8fSBarry Smith for (i=0; i<is_n; i++) { 213297b48c8fSBarry Smith row = is_idx[i]; 213397b48c8fSBarry Smith count = (baij->i[row/bs +1] - baij->i[row/bs])*bs; 213497b48c8fSBarry Smith aa = ((MatScalar*)(baij->a)) + baij->i[row/bs]*bs2 + (row%bs); 213597b48c8fSBarry Smith for (k=0; k<count; k++) { 213697b48c8fSBarry Smith aa[0] = zero; 213797b48c8fSBarry Smith aa += bs; 213897b48c8fSBarry Smith } 2139d4a378daSJed Brown if (diag != (PetscScalar)0.0) { 214097b48c8fSBarry Smith ierr = (*A->ops->setvalues)(A,1,&row,1,&row,&diag,INSERT_VALUES);CHKERRQ(ierr); 214197b48c8fSBarry Smith } 214297b48c8fSBarry Smith } 214397b48c8fSBarry Smith ierr = MatAssemblyEnd_SeqBAIJ(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 214497b48c8fSBarry Smith PetscFunctionReturn(0); 214597b48c8fSBarry Smith } 214697b48c8fSBarry Smith 214797b48c8fSBarry Smith #undef __FUNCT__ 21484a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_SeqBAIJ" 2149c1ac3661SBarry Smith PetscErrorCode MatSetValues_SeqBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is) 21502d61bbb3SSatish Balay { 21512d61bbb3SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 2152e2ee6c50SBarry Smith PetscInt *rp,k,low,high,t,ii,row,nrow,i,col,l,rmax,N,lastcol = -1; 2153c1ac3661SBarry Smith PetscInt *imax=a->imax,*ai=a->i,*ailen=a->ilen; 2154d0f46423SBarry Smith PetscInt *aj =a->j,nonew=a->nonew,bs=A->rmap->bs,brow,bcol; 21556849ba73SBarry Smith PetscErrorCode ierr; 2156c1ac3661SBarry Smith PetscInt ridx,cidx,bs2=a->bs2; 2157ace3abfcSBarry Smith PetscBool roworiented=a->roworiented; 21583f1db9ecSBarry Smith MatScalar *ap,value,*aa=a->a,*bap; 21592d61bbb3SSatish Balay 21602d61bbb3SSatish Balay PetscFunctionBegin; 21612d61bbb3SSatish Balay for (k=0; k<m; k++) { /* loop over added rows */ 2162085a36d4SBarry Smith row = im[k]; 2163085a36d4SBarry Smith brow = row/bs; 21645ef9f2a5SBarry Smith if (row < 0) continue; 21652515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 2166e32f2f54SBarry Smith if (row >= A->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,A->rmap->N-1); 21672d61bbb3SSatish Balay #endif 21682d61bbb3SSatish Balay rp = aj + ai[brow]; 21692d61bbb3SSatish Balay ap = aa + bs2*ai[brow]; 21702d61bbb3SSatish Balay rmax = imax[brow]; 21712d61bbb3SSatish Balay nrow = ailen[brow]; 21722d61bbb3SSatish Balay low = 0; 2173c71e6ed7SBarry Smith high = nrow; 21742d61bbb3SSatish Balay for (l=0; l<n; l++) { /* loop over added columns */ 21755ef9f2a5SBarry Smith if (in[l] < 0) continue; 21762515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 2177e32f2f54SBarry Smith if (in[l] >= A->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[l],A->cmap->n-1); 21782d61bbb3SSatish Balay #endif 21792d61bbb3SSatish Balay col = in[l]; bcol = col/bs; 21802d61bbb3SSatish Balay ridx = row % bs; cidx = col % bs; 21812d61bbb3SSatish Balay if (roworiented) { 21825ef9f2a5SBarry Smith value = v[l + k*n]; 21832d61bbb3SSatish Balay } else { 21842d61bbb3SSatish Balay value = v[k + l*m]; 21852d61bbb3SSatish Balay } 21867cd84e04SBarry Smith if (col <= lastcol) low = 0; else high = nrow; 2187e2ee6c50SBarry Smith lastcol = col; 21882d61bbb3SSatish Balay while (high-low > 7) { 21892d61bbb3SSatish Balay t = (low+high)/2; 21902d61bbb3SSatish Balay if (rp[t] > bcol) high = t; 21912d61bbb3SSatish Balay else low = t; 21922d61bbb3SSatish Balay } 21932d61bbb3SSatish Balay for (i=low; i<high; i++) { 21942d61bbb3SSatish Balay if (rp[i] > bcol) break; 21952d61bbb3SSatish Balay if (rp[i] == bcol) { 21962d61bbb3SSatish Balay bap = ap + bs2*i + bs*cidx + ridx; 21972d61bbb3SSatish Balay if (is == ADD_VALUES) *bap += value; 21982d61bbb3SSatish Balay else *bap = value; 21992d61bbb3SSatish Balay goto noinsert1; 22002d61bbb3SSatish Balay } 22012d61bbb3SSatish Balay } 22022d61bbb3SSatish Balay if (nonew == 1) goto noinsert1; 2203e32f2f54SBarry Smith if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col); 2204fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 2205c03d1d03SSatish Balay N = nrow++ - 1; high++; 22062d61bbb3SSatish Balay /* shift up all the later entries in this row */ 22072d61bbb3SSatish Balay for (ii=N; ii>=i; ii--) { 22082d61bbb3SSatish Balay rp[ii+1] = rp[ii]; 2209549d3d68SSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); 22102d61bbb3SSatish Balay } 2211549d3d68SSatish Balay if (N>=i) { 2212549d3d68SSatish Balay ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr); 2213549d3d68SSatish Balay } 22142d61bbb3SSatish Balay rp[i] = bcol; 22152d61bbb3SSatish Balay ap[bs2*i + bs*cidx + ridx] = value; 2216085a36d4SBarry Smith a->nz++; 2217e56f5c9eSBarry Smith A->nonzerostate++; 22182d61bbb3SSatish Balay noinsert1:; 22192d61bbb3SSatish Balay low = i; 22202d61bbb3SSatish Balay } 22212d61bbb3SSatish Balay ailen[brow] = nrow; 22222d61bbb3SSatish Balay } 22232d61bbb3SSatish Balay PetscFunctionReturn(0); 22242d61bbb3SSatish Balay } 22252d61bbb3SSatish Balay 22264a2ae208SSatish Balay #undef __FUNCT__ 22274a2ae208SSatish Balay #define __FUNCT__ "MatILUFactor_SeqBAIJ" 22280481f469SBarry Smith PetscErrorCode MatILUFactor_SeqBAIJ(Mat inA,IS row,IS col,const MatFactorInfo *info) 22292d61bbb3SSatish Balay { 22302d61bbb3SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)inA->data; 22312d61bbb3SSatish Balay Mat outA; 2232dfbe8321SBarry Smith PetscErrorCode ierr; 2233ace3abfcSBarry Smith PetscBool row_identity,col_identity; 22342d61bbb3SSatish Balay 22352d61bbb3SSatish Balay PetscFunctionBegin; 2236e32f2f54SBarry Smith if (info->levels != 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only levels = 0 supported for in-place ILU"); 2237667159a5SBarry Smith ierr = ISIdentity(row,&row_identity);CHKERRQ(ierr); 2238667159a5SBarry Smith ierr = ISIdentity(col,&col_identity);CHKERRQ(ierr); 2239f23aa3ddSBarry Smith if (!row_identity || !col_identity) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Row and column permutations must be identity for in-place ILU"); 22402d61bbb3SSatish Balay 22412d61bbb3SSatish Balay outA = inA; 2242d5f3da31SBarry Smith inA->factortype = MAT_FACTOR_LU; 22432d61bbb3SSatish Balay 2244c4992f7dSBarry Smith ierr = MatMarkDiagonal_SeqBAIJ(inA);CHKERRQ(ierr); 2245cf242676SKris Buschelman 2246c38d4ed2SBarry Smith ierr = PetscObjectReference((PetscObject)row);CHKERRQ(ierr); 22476bf464f9SBarry Smith ierr = ISDestroy(&a->row);CHKERRQ(ierr); 2248c3122656SLisandro Dalcin a->row = row; 2249c38d4ed2SBarry Smith ierr = PetscObjectReference((PetscObject)col);CHKERRQ(ierr); 22506bf464f9SBarry Smith ierr = ISDestroy(&a->col);CHKERRQ(ierr); 2251c3122656SLisandro Dalcin a->col = col; 2252c38d4ed2SBarry Smith 2253c38d4ed2SBarry Smith /* Create the invert permutation so that it can be used in MatLUFactorNumeric() */ 22546bf464f9SBarry Smith ierr = ISDestroy(&a->icol);CHKERRQ(ierr); 22554c49b128SBarry Smith ierr = ISInvertPermutation(col,PETSC_DECIDE,&a->icol);CHKERRQ(ierr); 22563bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)inA,(PetscObject)a->icol);CHKERRQ(ierr); 2257c38d4ed2SBarry Smith 2258ace3abfcSBarry Smith ierr = MatSeqBAIJSetNumericFactorization_inplace(inA,(PetscBool)(row_identity && col_identity));CHKERRQ(ierr); 2259c38d4ed2SBarry Smith if (!a->solve_work) { 2260854ce69bSBarry Smith ierr = PetscMalloc1(inA->rmap->N+inA->rmap->bs,&a->solve_work);CHKERRQ(ierr); 22613bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)inA,(inA->rmap->N+inA->rmap->bs)*sizeof(PetscScalar));CHKERRQ(ierr); 2262c38d4ed2SBarry Smith } 2263719d5645SBarry Smith ierr = MatLUFactorNumeric(outA,inA,info);CHKERRQ(ierr); 22642d61bbb3SSatish Balay PetscFunctionReturn(0); 22652d61bbb3SSatish Balay } 2266d9b7c43dSSatish Balay 22674a2ae208SSatish Balay #undef __FUNCT__ 22684a2ae208SSatish Balay #define __FUNCT__ "MatSeqBAIJSetColumnIndices_SeqBAIJ" 22697087cfbeSBarry Smith PetscErrorCode MatSeqBAIJSetColumnIndices_SeqBAIJ(Mat mat,PetscInt *indices) 227027a8da17SBarry Smith { 227127a8da17SBarry Smith Mat_SeqBAIJ *baij = (Mat_SeqBAIJ*)mat->data; 2272bdb1c0e1SJed Brown PetscInt i,nz,mbs; 227327a8da17SBarry Smith 227427a8da17SBarry Smith PetscFunctionBegin; 2275b32cb4a7SJed Brown nz = baij->maxnz; 2276bdb1c0e1SJed Brown mbs = baij->mbs; 227727a8da17SBarry Smith for (i=0; i<nz; i++) { 227827a8da17SBarry Smith baij->j[i] = indices[i]; 227927a8da17SBarry Smith } 228027a8da17SBarry Smith baij->nz = nz; 2281bdb1c0e1SJed Brown for (i=0; i<mbs; i++) { 228227a8da17SBarry Smith baij->ilen[i] = baij->imax[i]; 228327a8da17SBarry Smith } 228427a8da17SBarry Smith PetscFunctionReturn(0); 228527a8da17SBarry Smith } 228627a8da17SBarry Smith 22874a2ae208SSatish Balay #undef __FUNCT__ 22884a2ae208SSatish Balay #define __FUNCT__ "MatSeqBAIJSetColumnIndices" 228927a8da17SBarry Smith /*@ 229027a8da17SBarry Smith MatSeqBAIJSetColumnIndices - Set the column indices for all the rows 229127a8da17SBarry Smith in the matrix. 229227a8da17SBarry Smith 229327a8da17SBarry Smith Input Parameters: 229427a8da17SBarry Smith + mat - the SeqBAIJ matrix 229527a8da17SBarry Smith - indices - the column indices 229627a8da17SBarry Smith 229715091d37SBarry Smith Level: advanced 229815091d37SBarry Smith 229927a8da17SBarry Smith Notes: 230027a8da17SBarry Smith This can be called if you have precomputed the nonzero structure of the 230127a8da17SBarry Smith matrix and want to provide it to the matrix object to improve the performance 230227a8da17SBarry Smith of the MatSetValues() operation. 230327a8da17SBarry Smith 230427a8da17SBarry Smith You MUST have set the correct numbers of nonzeros per row in the call to 2305d1be2dadSMatthew Knepley MatCreateSeqBAIJ(), and the columns indices MUST be sorted. 230627a8da17SBarry Smith 230727a8da17SBarry Smith MUST be called before any calls to MatSetValues(); 230827a8da17SBarry Smith 230927a8da17SBarry Smith @*/ 23107087cfbeSBarry Smith PetscErrorCode MatSeqBAIJSetColumnIndices(Mat mat,PetscInt *indices) 231127a8da17SBarry Smith { 23124ac538c5SBarry Smith PetscErrorCode ierr; 231327a8da17SBarry Smith 231427a8da17SBarry Smith PetscFunctionBegin; 23150700a824SBarry Smith PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 23164482741eSBarry Smith PetscValidPointer(indices,2); 23174ac538c5SBarry Smith ierr = PetscUseMethod(mat,"MatSeqBAIJSetColumnIndices_C",(Mat,PetscInt*),(mat,indices));CHKERRQ(ierr); 231827a8da17SBarry Smith PetscFunctionReturn(0); 231927a8da17SBarry Smith } 232027a8da17SBarry Smith 23214a2ae208SSatish Balay #undef __FUNCT__ 2322985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_SeqBAIJ" 2323985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_SeqBAIJ(Mat A,Vec v,PetscInt idx[]) 2324273d9f13SBarry Smith { 2325273d9f13SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 2326dfbe8321SBarry Smith PetscErrorCode ierr; 2327c1ac3661SBarry Smith PetscInt i,j,n,row,bs,*ai,*aj,mbs; 2328273d9f13SBarry Smith PetscReal atmp; 232987828ca2SBarry Smith PetscScalar *x,zero = 0.0; 2330273d9f13SBarry Smith MatScalar *aa; 2331c1ac3661SBarry Smith PetscInt ncols,brow,krow,kcol; 2332273d9f13SBarry Smith 2333273d9f13SBarry Smith PetscFunctionBegin; 2334e32f2f54SBarry Smith if (A->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 2335d0f46423SBarry Smith bs = A->rmap->bs; 2336273d9f13SBarry Smith aa = a->a; 2337273d9f13SBarry Smith ai = a->i; 2338273d9f13SBarry Smith aj = a->j; 2339273d9f13SBarry Smith mbs = a->mbs; 2340273d9f13SBarry Smith 23412dcb1b2aSMatthew Knepley ierr = VecSet(v,zero);CHKERRQ(ierr); 23421ebc52fbSHong Zhang ierr = VecGetArray(v,&x);CHKERRQ(ierr); 2343273d9f13SBarry Smith ierr = VecGetLocalSize(v,&n);CHKERRQ(ierr); 2344e32f2f54SBarry Smith if (n != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector"); 2345273d9f13SBarry Smith for (i=0; i<mbs; i++) { 2346273d9f13SBarry Smith ncols = ai[1] - ai[0]; ai++; 2347273d9f13SBarry Smith brow = bs*i; 2348273d9f13SBarry Smith for (j=0; j<ncols; j++) { 2349273d9f13SBarry Smith for (kcol=0; kcol<bs; kcol++) { 2350273d9f13SBarry Smith for (krow=0; krow<bs; krow++) { 2351273d9f13SBarry Smith atmp = PetscAbsScalar(*aa);aa++; 2352273d9f13SBarry Smith row = brow + krow; /* row index */ 2353985db425SBarry Smith if (PetscAbsScalar(x[row]) < atmp) {x[row] = atmp; if (idx) idx[row] = bs*(*aj) + kcol;} 2354273d9f13SBarry Smith } 2355273d9f13SBarry Smith } 2356273d9f13SBarry Smith aj++; 2357273d9f13SBarry Smith } 2358273d9f13SBarry Smith } 23591ebc52fbSHong Zhang ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 2360273d9f13SBarry Smith PetscFunctionReturn(0); 2361273d9f13SBarry Smith } 2362273d9f13SBarry Smith 23634a2ae208SSatish Balay #undef __FUNCT__ 23643c896bc6SHong Zhang #define __FUNCT__ "MatCopy_SeqBAIJ" 23653c896bc6SHong Zhang PetscErrorCode MatCopy_SeqBAIJ(Mat A,Mat B,MatStructure str) 23663c896bc6SHong Zhang { 23673c896bc6SHong Zhang PetscErrorCode ierr; 23683c896bc6SHong Zhang 23693c896bc6SHong Zhang PetscFunctionBegin; 23703c896bc6SHong Zhang /* If the two matrices have the same copy implementation, use fast copy. */ 23713c896bc6SHong Zhang if (str == SAME_NONZERO_PATTERN && (A->ops->copy == B->ops->copy)) { 23723c896bc6SHong Zhang Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 23733c896bc6SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)B->data; 2374d88c0aacSHong Zhang PetscInt ambs=a->mbs,bmbs=b->mbs,abs=A->rmap->bs,bbs=B->rmap->bs,bs2=abs*abs; 23753c896bc6SHong Zhang 2376d88c0aacSHong Zhang if (a->i[ambs] != b->i[bmbs]) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Number of nonzero blocks in matrices A %D and B %D are different",a->i[ambs],b->i[bmbs]); 2377d88c0aacSHong Zhang if (abs != bbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Block size A %D and B %D are different",abs,bbs); 2378d88c0aacSHong Zhang ierr = PetscMemcpy(b->a,a->a,(bs2*a->i[ambs])*sizeof(PetscScalar));CHKERRQ(ierr); 23793c896bc6SHong Zhang } else { 23803c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 23813c896bc6SHong Zhang } 23823c896bc6SHong Zhang PetscFunctionReturn(0); 23833c896bc6SHong Zhang } 23843c896bc6SHong Zhang 23853c896bc6SHong Zhang #undef __FUNCT__ 23864994cf47SJed Brown #define __FUNCT__ "MatSetUp_SeqBAIJ" 23874994cf47SJed Brown PetscErrorCode MatSetUp_SeqBAIJ(Mat A) 2388273d9f13SBarry Smith { 2389dfbe8321SBarry Smith PetscErrorCode ierr; 2390273d9f13SBarry Smith 2391273d9f13SBarry Smith PetscFunctionBegin; 2392535b19f3SBarry Smith ierr = MatSeqBAIJSetPreallocation_SeqBAIJ(A,A->rmap->bs,PETSC_DEFAULT,0);CHKERRQ(ierr); 2393273d9f13SBarry Smith PetscFunctionReturn(0); 2394273d9f13SBarry Smith } 2395273d9f13SBarry Smith 23964a2ae208SSatish Balay #undef __FUNCT__ 23978c778c55SBarry Smith #define __FUNCT__ "MatSeqBAIJGetArray_SeqBAIJ" 23988c778c55SBarry Smith PetscErrorCode MatSeqBAIJGetArray_SeqBAIJ(Mat A,PetscScalar *array[]) 2399f2a5309cSSatish Balay { 2400f2a5309cSSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 24016e111a19SKarl Rupp 2402f2a5309cSSatish Balay PetscFunctionBegin; 2403f2a5309cSSatish Balay *array = a->a; 2404f2a5309cSSatish Balay PetscFunctionReturn(0); 2405f2a5309cSSatish Balay } 2406f2a5309cSSatish Balay 24074a2ae208SSatish Balay #undef __FUNCT__ 24088c778c55SBarry Smith #define __FUNCT__ "MatSeqBAIJRestoreArray_SeqBAIJ" 24098c778c55SBarry Smith PetscErrorCode MatSeqBAIJRestoreArray_SeqBAIJ(Mat A,PetscScalar *array[]) 2410f2a5309cSSatish Balay { 2411f2a5309cSSatish Balay PetscFunctionBegin; 2412f2a5309cSSatish Balay PetscFunctionReturn(0); 2413f2a5309cSSatish Balay } 2414f2a5309cSSatish Balay 241542ee4b1aSHong Zhang #undef __FUNCT__ 241652768537SHong Zhang #define __FUNCT__ "MatAXPYGetPreallocation_SeqBAIJ" 241752768537SHong Zhang PetscErrorCode MatAXPYGetPreallocation_SeqBAIJ(Mat Y,Mat X,PetscInt *nnz) 241852768537SHong Zhang { 2419b264fe52SHong Zhang PetscInt bs = Y->rmap->bs,mbs = Y->rmap->N/bs; 242052768537SHong Zhang Mat_SeqBAIJ *x = (Mat_SeqBAIJ*)X->data; 242152768537SHong Zhang Mat_SeqBAIJ *y = (Mat_SeqBAIJ*)Y->data; 2422b264fe52SHong Zhang PetscErrorCode ierr; 242352768537SHong Zhang 242452768537SHong Zhang PetscFunctionBegin; 242552768537SHong Zhang /* Set the number of nonzeros in the new matrix */ 2426b264fe52SHong Zhang ierr = MatAXPYGetPreallocation_SeqX_private(mbs,x->i,x->j,y->i,y->j,nnz);CHKERRQ(ierr); 242752768537SHong Zhang PetscFunctionReturn(0); 242852768537SHong Zhang } 242952768537SHong Zhang 243052768537SHong Zhang #undef __FUNCT__ 243142ee4b1aSHong Zhang #define __FUNCT__ "MatAXPY_SeqBAIJ" 2432f4df32b1SMatthew Knepley PetscErrorCode MatAXPY_SeqBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 243342ee4b1aSHong Zhang { 243442ee4b1aSHong Zhang Mat_SeqBAIJ *x = (Mat_SeqBAIJ*)X->data,*y = (Mat_SeqBAIJ*)Y->data; 2435dfbe8321SBarry Smith PetscErrorCode ierr; 243631ce2d13SHong Zhang PetscInt bs=Y->rmap->bs,bs2=bs*bs; 2437e838b9e7SJed Brown PetscBLASInt one=1; 243842ee4b1aSHong Zhang 243942ee4b1aSHong Zhang PetscFunctionBegin; 244042ee4b1aSHong Zhang if (str == SAME_NONZERO_PATTERN) { 2441f4df32b1SMatthew Knepley PetscScalar alpha = a; 2442c5df96a5SBarry Smith PetscBLASInt bnz; 2443c5df96a5SBarry Smith ierr = PetscBLASIntCast(x->nz*bs2,&bnz);CHKERRQ(ierr); 24448b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one)); 2445a3fa217bSJose E. Roman ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr); 2446ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 2447ab784542SHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 244842ee4b1aSHong Zhang } else { 244952768537SHong Zhang Mat B; 245052768537SHong Zhang PetscInt *nnz; 245152768537SHong Zhang if (bs != X->rmap->bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size"); 245252768537SHong Zhang ierr = PetscMalloc1(Y->rmap->N,&nnz);CHKERRQ(ierr); 245352768537SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr); 245452768537SHong Zhang ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr); 245552768537SHong Zhang ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr); 245652768537SHong Zhang ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr); 245752768537SHong Zhang ierr = MatSetType(B,(MatType) ((PetscObject)Y)->type_name);CHKERRQ(ierr); 245852768537SHong Zhang ierr = MatAXPYGetPreallocation_SeqBAIJ(Y,X,nnz);CHKERRQ(ierr); 245952768537SHong Zhang ierr = MatSeqBAIJSetPreallocation(B,bs,0,nnz);CHKERRQ(ierr); 246052768537SHong Zhang ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr); 246128be2f97SBarry Smith ierr = MatHeaderReplace(Y,&B);CHKERRQ(ierr); 246252768537SHong Zhang ierr = PetscFree(nnz);CHKERRQ(ierr); 246342ee4b1aSHong Zhang } 246442ee4b1aSHong Zhang PetscFunctionReturn(0); 246542ee4b1aSHong Zhang } 246642ee4b1aSHong Zhang 246799cafbc1SBarry Smith #undef __FUNCT__ 246899cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_SeqBAIJ" 246999cafbc1SBarry Smith PetscErrorCode MatRealPart_SeqBAIJ(Mat A) 247099cafbc1SBarry Smith { 247199cafbc1SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 247299cafbc1SBarry Smith PetscInt i,nz = a->bs2*a->i[a->mbs]; 2473dd6ea824SBarry Smith MatScalar *aa = a->a; 247499cafbc1SBarry Smith 247599cafbc1SBarry Smith PetscFunctionBegin; 247699cafbc1SBarry Smith for (i=0; i<nz; i++) aa[i] = PetscRealPart(aa[i]); 247799cafbc1SBarry Smith PetscFunctionReturn(0); 247899cafbc1SBarry Smith } 247999cafbc1SBarry Smith 248099cafbc1SBarry Smith #undef __FUNCT__ 248199cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_SeqBAIJ" 248299cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_SeqBAIJ(Mat A) 248399cafbc1SBarry Smith { 248499cafbc1SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 248599cafbc1SBarry Smith PetscInt i,nz = a->bs2*a->i[a->mbs]; 2486dd6ea824SBarry Smith MatScalar *aa = a->a; 248799cafbc1SBarry Smith 248899cafbc1SBarry Smith PetscFunctionBegin; 248999cafbc1SBarry Smith for (i=0; i<nz; i++) aa[i] = PetscImaginaryPart(aa[i]); 249099cafbc1SBarry Smith PetscFunctionReturn(0); 249199cafbc1SBarry Smith } 249299cafbc1SBarry Smith 24933acb8795SBarry Smith #undef __FUNCT__ 24943acb8795SBarry Smith #define __FUNCT__ "MatGetColumnIJ_SeqBAIJ" 24953acb8795SBarry Smith /* 24963acb8795SBarry Smith Code almost idential to MatGetColumnIJ_SeqAIJ() should share common code 24973acb8795SBarry Smith */ 24981a83f524SJed Brown PetscErrorCode MatGetColumnIJ_SeqBAIJ(Mat A,PetscInt oshift,PetscBool symmetric,PetscBool inodecompressed,PetscInt *nn,const PetscInt *ia[],const PetscInt *ja[],PetscBool *done) 24993acb8795SBarry Smith { 25003acb8795SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 25013acb8795SBarry Smith PetscErrorCode ierr; 25023acb8795SBarry Smith PetscInt bs = A->rmap->bs,i,*collengths,*cia,*cja,n = A->cmap->n/bs,m = A->rmap->n/bs; 25033acb8795SBarry Smith PetscInt nz = a->i[m],row,*jj,mr,col; 25043acb8795SBarry Smith 25053acb8795SBarry Smith PetscFunctionBegin; 25063acb8795SBarry Smith *nn = n; 25073acb8795SBarry Smith if (!ia) PetscFunctionReturn(0); 2508e7e72b3dSBarry Smith if (symmetric) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Not for BAIJ matrices"); 2509e7e72b3dSBarry Smith else { 2510854ce69bSBarry Smith ierr = PetscCalloc1(n+1,&collengths);CHKERRQ(ierr); 2511854ce69bSBarry Smith ierr = PetscMalloc1(n+1,&cia);CHKERRQ(ierr); 2512854ce69bSBarry Smith ierr = PetscMalloc1(nz+1,&cja);CHKERRQ(ierr); 25133acb8795SBarry Smith jj = a->j; 25143acb8795SBarry Smith for (i=0; i<nz; i++) { 25153acb8795SBarry Smith collengths[jj[i]]++; 25163acb8795SBarry Smith } 25173acb8795SBarry Smith cia[0] = oshift; 25183acb8795SBarry Smith for (i=0; i<n; i++) { 25193acb8795SBarry Smith cia[i+1] = cia[i] + collengths[i]; 25203acb8795SBarry Smith } 25213acb8795SBarry Smith ierr = PetscMemzero(collengths,n*sizeof(PetscInt));CHKERRQ(ierr); 25223acb8795SBarry Smith jj = a->j; 25233acb8795SBarry Smith for (row=0; row<m; row++) { 25243acb8795SBarry Smith mr = a->i[row+1] - a->i[row]; 25253acb8795SBarry Smith for (i=0; i<mr; i++) { 25263acb8795SBarry Smith col = *jj++; 252726fbe8dcSKarl Rupp 25283acb8795SBarry Smith cja[cia[col] + collengths[col]++ - oshift] = row + oshift; 25293acb8795SBarry Smith } 25303acb8795SBarry Smith } 25313acb8795SBarry Smith ierr = PetscFree(collengths);CHKERRQ(ierr); 25323acb8795SBarry Smith *ia = cia; *ja = cja; 25333acb8795SBarry Smith } 25343acb8795SBarry Smith PetscFunctionReturn(0); 25353acb8795SBarry Smith } 25363acb8795SBarry Smith 25373acb8795SBarry Smith #undef __FUNCT__ 25383acb8795SBarry Smith #define __FUNCT__ "MatRestoreColumnIJ_SeqBAIJ" 25391a83f524SJed Brown PetscErrorCode MatRestoreColumnIJ_SeqBAIJ(Mat A,PetscInt oshift,PetscBool symmetric,PetscBool inodecompressed,PetscInt *n,const PetscInt *ia[],const PetscInt *ja[],PetscBool *done) 25403acb8795SBarry Smith { 25413acb8795SBarry Smith PetscErrorCode ierr; 25423acb8795SBarry Smith 25433acb8795SBarry Smith PetscFunctionBegin; 25443acb8795SBarry Smith if (!ia) PetscFunctionReturn(0); 25453acb8795SBarry Smith ierr = PetscFree(*ia);CHKERRQ(ierr); 25463acb8795SBarry Smith ierr = PetscFree(*ja);CHKERRQ(ierr); 25473acb8795SBarry Smith PetscFunctionReturn(0); 25483acb8795SBarry Smith } 25493acb8795SBarry Smith 2550525d23c0SHong Zhang /* 2551525d23c0SHong Zhang MatGetColumnIJ_SeqBAIJ_Color() and MatRestoreColumnIJ_SeqBAIJ_Color() are customized from 2552525d23c0SHong Zhang MatGetColumnIJ_SeqBAIJ() and MatRestoreColumnIJ_SeqBAIJ() by adding an output 2553040ebd07SHong Zhang spidx[], index of a->a, to be used in MatTransposeColoringCreate() and MatFDColoringCreate() 2554525d23c0SHong Zhang */ 2555f6d58c54SBarry Smith #undef __FUNCT__ 2556525d23c0SHong Zhang #define __FUNCT__ "MatGetColumnIJ_SeqBAIJ_Color" 2557525d23c0SHong Zhang PetscErrorCode MatGetColumnIJ_SeqBAIJ_Color(Mat A,PetscInt oshift,PetscBool symmetric,PetscBool inodecompressed,PetscInt *nn,const PetscInt *ia[],const PetscInt *ja[],PetscInt *spidx[],PetscBool *done) 2558f6d58c54SBarry Smith { 2559525d23c0SHong Zhang Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 2560f6d58c54SBarry Smith PetscErrorCode ierr; 2561c0349474SHong Zhang PetscInt i,*collengths,*cia,*cja,n=a->nbs,m=a->mbs; 2562525d23c0SHong Zhang PetscInt nz = a->i[m],row,*jj,mr,col; 2563525d23c0SHong Zhang PetscInt *cspidx; 2564f6d58c54SBarry Smith 2565f6d58c54SBarry Smith PetscFunctionBegin; 2566525d23c0SHong Zhang *nn = n; 2567525d23c0SHong Zhang if (!ia) PetscFunctionReturn(0); 2568f6d58c54SBarry Smith 2569854ce69bSBarry Smith ierr = PetscCalloc1(n+1,&collengths);CHKERRQ(ierr); 2570854ce69bSBarry Smith ierr = PetscMalloc1(n+1,&cia);CHKERRQ(ierr); 2571854ce69bSBarry Smith ierr = PetscMalloc1(nz+1,&cja);CHKERRQ(ierr); 2572854ce69bSBarry Smith ierr = PetscMalloc1(nz+1,&cspidx);CHKERRQ(ierr); 2573525d23c0SHong Zhang jj = a->j; 2574525d23c0SHong Zhang for (i=0; i<nz; i++) { 2575525d23c0SHong Zhang collengths[jj[i]]++; 2576f6d58c54SBarry Smith } 2577525d23c0SHong Zhang cia[0] = oshift; 2578525d23c0SHong Zhang for (i=0; i<n; i++) { 2579525d23c0SHong Zhang cia[i+1] = cia[i] + collengths[i]; 2580525d23c0SHong Zhang } 2581525d23c0SHong Zhang ierr = PetscMemzero(collengths,n*sizeof(PetscInt));CHKERRQ(ierr); 2582525d23c0SHong Zhang jj = a->j; 2583525d23c0SHong Zhang for (row=0; row<m; row++) { 2584525d23c0SHong Zhang mr = a->i[row+1] - a->i[row]; 2585525d23c0SHong Zhang for (i=0; i<mr; i++) { 2586525d23c0SHong Zhang col = *jj++; 2587525d23c0SHong Zhang cspidx[cia[col] + collengths[col] - oshift] = a->i[row] + i; /* index of a->j */ 2588525d23c0SHong Zhang cja[cia[col] + collengths[col]++ - oshift] = row + oshift; 2589525d23c0SHong Zhang } 2590525d23c0SHong Zhang } 2591525d23c0SHong Zhang ierr = PetscFree(collengths);CHKERRQ(ierr); 2592525d23c0SHong Zhang *ia = cia; *ja = cja; 2593525d23c0SHong Zhang *spidx = cspidx; 2594525d23c0SHong Zhang PetscFunctionReturn(0); 2595f6d58c54SBarry Smith } 2596f6d58c54SBarry Smith 2597525d23c0SHong Zhang #undef __FUNCT__ 2598525d23c0SHong Zhang #define __FUNCT__ "MatRestoreColumnIJ_SeqBAIJ_Color" 2599525d23c0SHong Zhang PetscErrorCode MatRestoreColumnIJ_SeqBAIJ_Color(Mat A,PetscInt oshift,PetscBool symmetric,PetscBool inodecompressed,PetscInt *n,const PetscInt *ia[],const PetscInt *ja[],PetscInt *spidx[],PetscBool *done) 2600525d23c0SHong Zhang { 2601525d23c0SHong Zhang PetscErrorCode ierr; 2602f6d58c54SBarry Smith 2603525d23c0SHong Zhang PetscFunctionBegin; 2604525d23c0SHong Zhang ierr = MatRestoreColumnIJ_SeqBAIJ(A,oshift,symmetric,inodecompressed,n,ia,ja,done);CHKERRQ(ierr); 2605525d23c0SHong Zhang ierr = PetscFree(*spidx);CHKERRQ(ierr); 2606f6d58c54SBarry Smith PetscFunctionReturn(0); 2607f6d58c54SBarry Smith } 260899cafbc1SBarry Smith 26097d68702bSBarry Smith #undef __FUNCT__ 26107d68702bSBarry Smith #define __FUNCT__ "MatShift_SeqBAIJ" 26117d68702bSBarry Smith PetscErrorCode MatShift_SeqBAIJ(Mat Y,PetscScalar a) 26127d68702bSBarry Smith { 26137d68702bSBarry Smith PetscErrorCode ierr; 26147d68702bSBarry Smith Mat_SeqBAIJ *aij = (Mat_SeqBAIJ*)Y->data; 26157d68702bSBarry Smith 26167d68702bSBarry Smith PetscFunctionBegin; 26176f33a894SBarry Smith if (!Y->preallocated || !aij->nz) { 26187d68702bSBarry Smith ierr = MatSeqBAIJSetPreallocation(Y,Y->rmap->bs,1,NULL);CHKERRQ(ierr); 26197d68702bSBarry Smith } 26207d68702bSBarry Smith ierr = MatShift_Basic(Y,a);CHKERRQ(ierr); 26217d68702bSBarry Smith PetscFunctionReturn(0); 26227d68702bSBarry Smith } 26237d68702bSBarry Smith 26242593348eSBarry Smith /* -------------------------------------------------------------------*/ 26253964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_SeqBAIJ, 2626cc2dc46cSBarry Smith MatGetRow_SeqBAIJ, 2627cc2dc46cSBarry Smith MatRestoreRow_SeqBAIJ, 2628cc2dc46cSBarry Smith MatMult_SeqBAIJ_N, 262997304618SKris Buschelman /* 4*/ MatMultAdd_SeqBAIJ_N, 26307c922b88SBarry Smith MatMultTranspose_SeqBAIJ, 26317c922b88SBarry Smith MatMultTransposeAdd_SeqBAIJ, 2632db4efbfdSBarry Smith 0, 2633cc2dc46cSBarry Smith 0, 2634cc2dc46cSBarry Smith 0, 263597304618SKris Buschelman /* 10*/ 0, 2636cc2dc46cSBarry Smith MatLUFactor_SeqBAIJ, 2637cc2dc46cSBarry Smith 0, 2638b6490206SBarry Smith 0, 2639f2501298SSatish Balay MatTranspose_SeqBAIJ, 264097304618SKris Buschelman /* 15*/ MatGetInfo_SeqBAIJ, 2641cc2dc46cSBarry Smith MatEqual_SeqBAIJ, 2642cc2dc46cSBarry Smith MatGetDiagonal_SeqBAIJ, 2643cc2dc46cSBarry Smith MatDiagonalScale_SeqBAIJ, 2644cc2dc46cSBarry Smith MatNorm_SeqBAIJ, 264597304618SKris Buschelman /* 20*/ 0, 2646cc2dc46cSBarry Smith MatAssemblyEnd_SeqBAIJ, 2647cc2dc46cSBarry Smith MatSetOption_SeqBAIJ, 2648cc2dc46cSBarry Smith MatZeroEntries_SeqBAIJ, 2649d519adbfSMatthew Knepley /* 24*/ MatZeroRows_SeqBAIJ, 2650db4efbfdSBarry Smith 0, 2651db4efbfdSBarry Smith 0, 2652db4efbfdSBarry Smith 0, 2653db4efbfdSBarry Smith 0, 26544994cf47SJed Brown /* 29*/ MatSetUp_SeqBAIJ, 2655db4efbfdSBarry Smith 0, 2656db4efbfdSBarry Smith 0, 26578c778c55SBarry Smith 0, 26588c778c55SBarry Smith 0, 2659d519adbfSMatthew Knepley /* 34*/ MatDuplicate_SeqBAIJ, 2660cc2dc46cSBarry Smith 0, 2661cc2dc46cSBarry Smith 0, 2662cc2dc46cSBarry Smith MatILUFactor_SeqBAIJ, 2663cc2dc46cSBarry Smith 0, 2664d519adbfSMatthew Knepley /* 39*/ MatAXPY_SeqBAIJ, 2665cc2dc46cSBarry Smith MatGetSubMatrices_SeqBAIJ, 2666cc2dc46cSBarry Smith MatIncreaseOverlap_SeqBAIJ, 2667cc2dc46cSBarry Smith MatGetValues_SeqBAIJ, 26683c896bc6SHong Zhang MatCopy_SeqBAIJ, 2669d519adbfSMatthew Knepley /* 44*/ 0, 2670cc2dc46cSBarry Smith MatScale_SeqBAIJ, 26717d68702bSBarry Smith MatShift_SeqBAIJ, 2672cc2dc46cSBarry Smith 0, 267397b48c8fSBarry Smith MatZeroRowsColumns_SeqBAIJ, 2674f73d5cc4SBarry Smith /* 49*/ 0, 26753b2fbd54SBarry Smith MatGetRowIJ_SeqBAIJ, 267692c4ed94SBarry Smith MatRestoreRowIJ_SeqBAIJ, 26773acb8795SBarry Smith MatGetColumnIJ_SeqBAIJ, 26783acb8795SBarry Smith MatRestoreColumnIJ_SeqBAIJ, 267993dfae19SHong Zhang /* 54*/ MatFDColoringCreate_SeqXAIJ, 2680cc2dc46cSBarry Smith 0, 2681cc2dc46cSBarry Smith 0, 2682cc2dc46cSBarry Smith 0, 2683d3825aa8SBarry Smith MatSetValuesBlocked_SeqBAIJ, 2684d519adbfSMatthew Knepley /* 59*/ MatGetSubMatrix_SeqBAIJ, 2685b9b97703SBarry Smith MatDestroy_SeqBAIJ, 2686b9b97703SBarry Smith MatView_SeqBAIJ, 2687357abbc8SBarry Smith 0, 2688273d9f13SBarry Smith 0, 2689d519adbfSMatthew Knepley /* 64*/ 0, 2690273d9f13SBarry Smith 0, 2691273d9f13SBarry Smith 0, 2692273d9f13SBarry Smith 0, 2693273d9f13SBarry Smith 0, 2694d519adbfSMatthew Knepley /* 69*/ MatGetRowMaxAbs_SeqBAIJ, 2695273d9f13SBarry Smith 0, 2696c87e5d42SMatthew Knepley MatConvert_Basic, 269797304618SKris Buschelman 0, 269897304618SKris Buschelman 0, 2699d519adbfSMatthew Knepley /* 74*/ 0, 2700f6d58c54SBarry Smith MatFDColoringApply_BAIJ, 270197304618SKris Buschelman 0, 270297304618SKris Buschelman 0, 270397304618SKris Buschelman 0, 2704d519adbfSMatthew Knepley /* 79*/ 0, 270597304618SKris Buschelman 0, 270697304618SKris Buschelman 0, 270797304618SKris Buschelman 0, 27085bba2384SShri Abhyankar MatLoad_SeqBAIJ, 2709d519adbfSMatthew Knepley /* 84*/ 0, 2710b01c7715SBarry Smith 0, 2711b01c7715SBarry Smith 0, 2712b01c7715SBarry Smith 0, 2713865e5f61SKris Buschelman 0, 2714d519adbfSMatthew Knepley /* 89*/ 0, 2715865e5f61SKris Buschelman 0, 2716865e5f61SKris Buschelman 0, 2717865e5f61SKris Buschelman 0, 2718865e5f61SKris Buschelman 0, 2719d519adbfSMatthew Knepley /* 94*/ 0, 2720865e5f61SKris Buschelman 0, 2721865e5f61SKris Buschelman 0, 272299cafbc1SBarry Smith 0, 272399cafbc1SBarry Smith 0, 2724d519adbfSMatthew Knepley /* 99*/ 0, 272599cafbc1SBarry Smith 0, 272699cafbc1SBarry Smith 0, 272799cafbc1SBarry Smith 0, 272899cafbc1SBarry Smith 0, 2729d519adbfSMatthew Knepley /*104*/ 0, 273099cafbc1SBarry Smith MatRealPart_SeqBAIJ, 27312af78befSBarry Smith MatImaginaryPart_SeqBAIJ, 27322af78befSBarry Smith 0, 27332af78befSBarry Smith 0, 2734d519adbfSMatthew Knepley /*109*/ 0, 27352af78befSBarry Smith 0, 27362af78befSBarry Smith 0, 27372af78befSBarry Smith 0, 2738547795f9SHong Zhang MatMissingDiagonal_SeqBAIJ, 2739547795f9SHong Zhang /*114*/ 0, 2740547795f9SHong Zhang 0, 2741547795f9SHong Zhang 0, 2742547795f9SHong Zhang 0, 2743547795f9SHong Zhang 0, 2744547795f9SHong Zhang /*119*/ 0, 2745547795f9SHong Zhang 0, 2746547795f9SHong Zhang MatMultHermitianTranspose_SeqBAIJ, 2747d6037b41SHong Zhang MatMultHermitianTransposeAdd_SeqBAIJ, 2748d6037b41SHong Zhang 0, 2749bbead8a2SBarry Smith /*124*/ 0, 2750bbead8a2SBarry Smith 0, 27513964eb88SJed Brown MatInvertBlockDiagonal_SeqBAIJ, 27523964eb88SJed Brown 0, 27533964eb88SJed Brown 0, 27543964eb88SJed Brown /*129*/ 0, 27553964eb88SJed Brown 0, 27563964eb88SJed Brown 0, 27573964eb88SJed Brown 0, 27583964eb88SJed Brown 0, 27593964eb88SJed Brown /*134*/ 0, 27603964eb88SJed Brown 0, 27613964eb88SJed Brown 0, 27623964eb88SJed Brown 0, 27633964eb88SJed Brown 0, 27643964eb88SJed Brown /*139*/ 0, 2765f9426fe0SMark Adams 0, 27661919a2e2SJed Brown 0, 2767bdf6f3fcSHong Zhang MatFDColoringSetUp_SeqXAIJ, 2768bdf6f3fcSHong Zhang 0, 2769bdf6f3fcSHong Zhang /*144*/MatCreateMPIMatConcatenateSeqMat_SeqBAIJ 277099cafbc1SBarry Smith }; 27712593348eSBarry Smith 27724a2ae208SSatish Balay #undef __FUNCT__ 27734a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_SeqBAIJ" 27747087cfbeSBarry Smith PetscErrorCode MatStoreValues_SeqBAIJ(Mat mat) 27753e90b805SBarry Smith { 27763e90b805SBarry Smith Mat_SeqBAIJ *aij = (Mat_SeqBAIJ*)mat->data; 27778ece6314SShri Abhyankar PetscInt nz = aij->i[aij->mbs]*aij->bs2; 2778dfbe8321SBarry Smith PetscErrorCode ierr; 27793e90b805SBarry Smith 27803e90b805SBarry Smith PetscFunctionBegin; 2781e7e72b3dSBarry Smith if (aij->nonew != 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first"); 27823e90b805SBarry Smith 27833e90b805SBarry Smith /* allocate space for values if not already there */ 27843e90b805SBarry Smith if (!aij->saved_values) { 2785854ce69bSBarry Smith ierr = PetscMalloc1(nz+1,&aij->saved_values);CHKERRQ(ierr); 27863bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,(nz+1)*sizeof(PetscScalar));CHKERRQ(ierr); 27873e90b805SBarry Smith } 27883e90b805SBarry Smith 27893e90b805SBarry Smith /* copy values over */ 279087828ca2SBarry Smith ierr = PetscMemcpy(aij->saved_values,aij->a,nz*sizeof(PetscScalar));CHKERRQ(ierr); 27913e90b805SBarry Smith PetscFunctionReturn(0); 27923e90b805SBarry Smith } 27933e90b805SBarry Smith 27944a2ae208SSatish Balay #undef __FUNCT__ 27954a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_SeqBAIJ" 27967087cfbeSBarry Smith PetscErrorCode MatRetrieveValues_SeqBAIJ(Mat mat) 27973e90b805SBarry Smith { 27983e90b805SBarry Smith Mat_SeqBAIJ *aij = (Mat_SeqBAIJ*)mat->data; 27996849ba73SBarry Smith PetscErrorCode ierr; 28008ece6314SShri Abhyankar PetscInt nz = aij->i[aij->mbs]*aij->bs2; 28013e90b805SBarry Smith 28023e90b805SBarry Smith PetscFunctionBegin; 2803e7e72b3dSBarry Smith if (aij->nonew != 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first"); 2804e7e72b3dSBarry Smith if (!aij->saved_values) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatStoreValues(A);first"); 28053e90b805SBarry Smith 28063e90b805SBarry Smith /* copy values over */ 280787828ca2SBarry Smith ierr = PetscMemcpy(aij->a,aij->saved_values,nz*sizeof(PetscScalar));CHKERRQ(ierr); 28083e90b805SBarry Smith PetscFunctionReturn(0); 28093e90b805SBarry Smith } 28103e90b805SBarry Smith 28118cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_SeqBAIJ_SeqAIJ(Mat, MatType,MatReuse,Mat*); 28128cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_SeqBAIJ_SeqSBAIJ(Mat, MatType,MatReuse,Mat*); 2813273d9f13SBarry Smith 28144a2ae208SSatish Balay #undef __FUNCT__ 2815a23d5eceSKris Buschelman #define __FUNCT__ "MatSeqBAIJSetPreallocation_SeqBAIJ" 28167087cfbeSBarry Smith PetscErrorCode MatSeqBAIJSetPreallocation_SeqBAIJ(Mat B,PetscInt bs,PetscInt nz,PetscInt *nnz) 2817a23d5eceSKris Buschelman { 2818a23d5eceSKris Buschelman Mat_SeqBAIJ *b; 28196849ba73SBarry Smith PetscErrorCode ierr; 2820535b19f3SBarry Smith PetscInt i,mbs,nbs,bs2; 28218afaa268SBarry Smith PetscBool flg = PETSC_FALSE,skipallocation = PETSC_FALSE,realalloc = PETSC_FALSE; 2822a23d5eceSKris Buschelman 2823a23d5eceSKris Buschelman PetscFunctionBegin; 28242576faa2SJed Brown if (nz >= 0 || nnz) realalloc = PETSC_TRUE; 2825ab93d7beSBarry Smith if (nz == MAT_SKIP_ALLOCATION) { 2826ab93d7beSBarry Smith skipallocation = PETSC_TRUE; 2827ab93d7beSBarry Smith nz = 0; 2828ab93d7beSBarry Smith } 28298c07d4e3SBarry Smith 283033d57670SJed Brown ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr); 283126283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 283226283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 2833e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 2834899cda47SBarry Smith 2835899cda47SBarry Smith B->preallocated = PETSC_TRUE; 2836899cda47SBarry Smith 2837d0f46423SBarry Smith mbs = B->rmap->n/bs; 2838d0f46423SBarry Smith nbs = B->cmap->n/bs; 2839a23d5eceSKris Buschelman bs2 = bs*bs; 2840a23d5eceSKris Buschelman 284165e19b50SBarry Smith if (mbs*bs!=B->rmap->n || nbs*bs!=B->cmap->n) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Number rows %D, cols %D must be divisible by blocksize %D",B->rmap->N,B->cmap->n,bs); 2842a23d5eceSKris Buschelman 2843a23d5eceSKris Buschelman if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 5; 2844e32f2f54SBarry Smith if (nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"nz cannot be less than 0: value %D",nz); 2845a23d5eceSKris Buschelman if (nnz) { 2846a23d5eceSKris Buschelman for (i=0; i<mbs; i++) { 2847e32f2f54SBarry Smith if (nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"nnz cannot be less than 0: local row %D value %D",i,nnz[i]); 2848e32f2f54SBarry Smith if (nnz[i] > nbs) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"nnz cannot be greater than block row length: local row %D value %D rowlength %D",i,nnz[i],nbs); 2849a23d5eceSKris Buschelman } 2850a23d5eceSKris Buschelman } 2851a23d5eceSKris Buschelman 2852a23d5eceSKris Buschelman b = (Mat_SeqBAIJ*)B->data; 2853ce94432eSBarry Smith ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Optimize options for SEQBAIJ matrix 2 ","Mat");CHKERRQ(ierr); 28548afaa268SBarry Smith ierr = PetscOptionsBool("-mat_no_unroll","Do not optimize for block size (slow)",NULL,flg,&flg,NULL);CHKERRQ(ierr); 28558c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 28568c07d4e3SBarry Smith 2857a23d5eceSKris Buschelman if (!flg) { 2858a23d5eceSKris Buschelman switch (bs) { 2859a23d5eceSKris Buschelman case 1: 2860a23d5eceSKris Buschelman B->ops->mult = MatMult_SeqBAIJ_1; 2861a23d5eceSKris Buschelman B->ops->multadd = MatMultAdd_SeqBAIJ_1; 2862a23d5eceSKris Buschelman break; 2863a23d5eceSKris Buschelman case 2: 2864a23d5eceSKris Buschelman B->ops->mult = MatMult_SeqBAIJ_2; 2865a23d5eceSKris Buschelman B->ops->multadd = MatMultAdd_SeqBAIJ_2; 2866a23d5eceSKris Buschelman break; 2867a23d5eceSKris Buschelman case 3: 2868a23d5eceSKris Buschelman B->ops->mult = MatMult_SeqBAIJ_3; 2869a23d5eceSKris Buschelman B->ops->multadd = MatMultAdd_SeqBAIJ_3; 2870a23d5eceSKris Buschelman break; 2871a23d5eceSKris Buschelman case 4: 2872a23d5eceSKris Buschelman B->ops->mult = MatMult_SeqBAIJ_4; 2873a23d5eceSKris Buschelman B->ops->multadd = MatMultAdd_SeqBAIJ_4; 2874a23d5eceSKris Buschelman break; 2875a23d5eceSKris Buschelman case 5: 2876a23d5eceSKris Buschelman B->ops->mult = MatMult_SeqBAIJ_5; 2877a23d5eceSKris Buschelman B->ops->multadd = MatMultAdd_SeqBAIJ_5; 2878a23d5eceSKris Buschelman break; 2879a23d5eceSKris Buschelman case 6: 2880a23d5eceSKris Buschelman B->ops->mult = MatMult_SeqBAIJ_6; 2881a23d5eceSKris Buschelman B->ops->multadd = MatMultAdd_SeqBAIJ_6; 2882a23d5eceSKris Buschelman break; 2883a23d5eceSKris Buschelman case 7: 2884a23d5eceSKris Buschelman B->ops->mult = MatMult_SeqBAIJ_7; 2885a23d5eceSKris Buschelman B->ops->multadd = MatMultAdd_SeqBAIJ_7; 2886a23d5eceSKris Buschelman break; 28878ab949d8SShri Abhyankar case 15: 2888832cc040SShri Abhyankar B->ops->mult = MatMult_SeqBAIJ_15_ver1; 2889de80f912SBarry Smith B->ops->multadd = MatMultAdd_SeqBAIJ_N; 28908ab949d8SShri Abhyankar break; 2891a23d5eceSKris Buschelman default: 2892a23d5eceSKris Buschelman B->ops->mult = MatMult_SeqBAIJ_N; 2893a23d5eceSKris Buschelman B->ops->multadd = MatMultAdd_SeqBAIJ_N; 2894a23d5eceSKris Buschelman break; 2895a23d5eceSKris Buschelman } 2896a23d5eceSKris Buschelman } 2897e48d15efSToby Isaac B->ops->sor = MatSOR_SeqBAIJ; 2898a23d5eceSKris Buschelman b->mbs = mbs; 2899a23d5eceSKris Buschelman b->nbs = nbs; 2900ab93d7beSBarry Smith if (!skipallocation) { 29012ee49352SLisandro Dalcin if (!b->imax) { 2902dcca6d9dSJed Brown ierr = PetscMalloc2(mbs,&b->imax,mbs,&b->ilen);CHKERRQ(ierr); 29033bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)B,2*mbs*sizeof(PetscInt));CHKERRQ(ierr); 290426fbe8dcSKarl Rupp 29054fd072dbSBarry Smith b->free_imax_ilen = PETSC_TRUE; 29062ee49352SLisandro Dalcin } 2907ab93d7beSBarry Smith /* b->ilen will count nonzeros in each block row so far. */ 290826fbe8dcSKarl Rupp for (i=0; i<mbs; i++) b->ilen[i] = 0; 2909a23d5eceSKris Buschelman if (!nnz) { 2910a23d5eceSKris Buschelman if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 5; 2911c62bd62aSJed Brown else if (nz < 0) nz = 1; 2912a23d5eceSKris Buschelman for (i=0; i<mbs; i++) b->imax[i] = nz; 2913a23d5eceSKris Buschelman nz = nz*mbs; 2914a23d5eceSKris Buschelman } else { 2915a23d5eceSKris Buschelman nz = 0; 2916a23d5eceSKris Buschelman for (i=0; i<mbs; i++) {b->imax[i] = nnz[i]; nz += nnz[i];} 2917a23d5eceSKris Buschelman } 2918a23d5eceSKris Buschelman 2919a23d5eceSKris Buschelman /* allocate the matrix space */ 29202ee49352SLisandro Dalcin ierr = MatSeqXAIJFreeAIJ(B,&b->a,&b->j,&b->i);CHKERRQ(ierr); 2921dcca6d9dSJed Brown ierr = PetscMalloc3(bs2*nz,&b->a,nz,&b->j,B->rmap->N+1,&b->i);CHKERRQ(ierr); 29223bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)B,(B->rmap->N+1)*sizeof(PetscInt)+nz*(bs2*sizeof(PetscScalar)+sizeof(PetscInt)));CHKERRQ(ierr); 2923a23d5eceSKris Buschelman ierr = PetscMemzero(b->a,nz*bs2*sizeof(MatScalar));CHKERRQ(ierr); 2924c1ac3661SBarry Smith ierr = PetscMemzero(b->j,nz*sizeof(PetscInt));CHKERRQ(ierr); 292526fbe8dcSKarl Rupp 2926a23d5eceSKris Buschelman b->singlemalloc = PETSC_TRUE; 2927a23d5eceSKris Buschelman b->i[0] = 0; 2928a23d5eceSKris Buschelman for (i=1; i<mbs+1; i++) { 2929a23d5eceSKris Buschelman b->i[i] = b->i[i-1] + b->imax[i-1]; 2930a23d5eceSKris Buschelman } 2931e6b907acSBarry Smith b->free_a = PETSC_TRUE; 2932e6b907acSBarry Smith b->free_ij = PETSC_TRUE; 2933e811da20SHong Zhang } else { 2934e6b907acSBarry Smith b->free_a = PETSC_FALSE; 2935e6b907acSBarry Smith b->free_ij = PETSC_FALSE; 2936ab93d7beSBarry Smith } 2937a23d5eceSKris Buschelman 2938a23d5eceSKris Buschelman b->bs2 = bs2; 2939a23d5eceSKris Buschelman b->mbs = mbs; 2940a23d5eceSKris Buschelman b->nz = 0; 2941b32cb4a7SJed Brown b->maxnz = nz; 2942b32cb4a7SJed Brown B->info.nz_unneeded = (PetscReal)b->maxnz*bs2; 29432576faa2SJed Brown if (realalloc) {ierr = MatSetOption(B,MAT_NEW_NONZERO_ALLOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);} 2944a23d5eceSKris Buschelman PetscFunctionReturn(0); 2945a23d5eceSKris Buschelman } 2946a23d5eceSKris Buschelman 2947725b52f3SLisandro Dalcin #undef __FUNCT__ 2948725b52f3SLisandro Dalcin #define __FUNCT__ "MatSeqBAIJSetPreallocationCSR_SeqBAIJ" 2949cf12db73SBarry Smith PetscErrorCode MatSeqBAIJSetPreallocationCSR_SeqBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 2950725b52f3SLisandro Dalcin { 2951725b52f3SLisandro Dalcin PetscInt i,m,nz,nz_max=0,*nnz; 2952725b52f3SLisandro Dalcin PetscScalar *values=0; 2953d47bf9aaSJed Brown PetscBool roworiented = ((Mat_SeqBAIJ*)B->data)->roworiented; 2954725b52f3SLisandro Dalcin PetscErrorCode ierr; 2955725b52f3SLisandro Dalcin 2956725b52f3SLisandro Dalcin PetscFunctionBegin; 2957e32f2f54SBarry Smith if (bs < 1) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs); 295826283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 295926283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 296026283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 296126283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 2962e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 2963d0f46423SBarry Smith m = B->rmap->n/bs; 2964725b52f3SLisandro Dalcin 296526fbe8dcSKarl Rupp if (ii[0] != 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %D",ii[0]); 2966854ce69bSBarry Smith ierr = PetscMalloc1(m+1, &nnz);CHKERRQ(ierr); 2967725b52f3SLisandro Dalcin for (i=0; i<m; i++) { 2968cf12db73SBarry Smith nz = ii[i+1]- ii[i]; 296926fbe8dcSKarl Rupp if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE, "Local row %D has a negative number of columns %D",i,nz); 2970725b52f3SLisandro Dalcin nz_max = PetscMax(nz_max, nz); 2971725b52f3SLisandro Dalcin nnz[i] = nz; 2972725b52f3SLisandro Dalcin } 2973725b52f3SLisandro Dalcin ierr = MatSeqBAIJSetPreallocation(B,bs,0,nnz);CHKERRQ(ierr); 2974725b52f3SLisandro Dalcin ierr = PetscFree(nnz);CHKERRQ(ierr); 2975725b52f3SLisandro Dalcin 2976725b52f3SLisandro Dalcin values = (PetscScalar*)V; 2977725b52f3SLisandro Dalcin if (!values) { 29781795a4d1SJed Brown ierr = PetscCalloc1(bs*bs*(nz_max+1),&values);CHKERRQ(ierr); 2979725b52f3SLisandro Dalcin } 2980725b52f3SLisandro Dalcin for (i=0; i<m; i++) { 2981cf12db73SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 2982cf12db73SBarry Smith const PetscInt *icols = jj + ii[i]; 2983cf12db73SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 29843adadaf3SJed Brown if (!roworiented) { 2985725b52f3SLisandro Dalcin ierr = MatSetValuesBlocked_SeqBAIJ(B,1,&i,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 29863adadaf3SJed Brown } else { 29873adadaf3SJed Brown PetscInt j; 29883adadaf3SJed Brown for (j=0; j<ncols; j++) { 29893adadaf3SJed Brown const PetscScalar *svals = values + (V ? (bs*bs*(ii[i]+j)) : 0); 2990d47bf9aaSJed Brown ierr = MatSetValuesBlocked_SeqBAIJ(B,1,&i,1,&icols[j],svals,INSERT_VALUES);CHKERRQ(ierr); 29913adadaf3SJed Brown } 29923adadaf3SJed Brown } 2993725b52f3SLisandro Dalcin } 2994725b52f3SLisandro Dalcin if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 2995725b52f3SLisandro Dalcin ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2996725b52f3SLisandro Dalcin ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 29977827cd58SJed Brown ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 2998725b52f3SLisandro Dalcin PetscFunctionReturn(0); 2999725b52f3SLisandro Dalcin } 3000725b52f3SLisandro Dalcin 30010bad9183SKris Buschelman /*MC 3002fafad747SKris Buschelman MATSEQBAIJ - MATSEQBAIJ = "seqbaij" - A matrix type to be used for sequential block sparse matrices, based on 30030bad9183SKris Buschelman block sparse compressed row format. 30040bad9183SKris Buschelman 30050bad9183SKris Buschelman Options Database Keys: 30060bad9183SKris Buschelman . -mat_type seqbaij - sets the matrix type to "seqbaij" during a call to MatSetFromOptions() 30070bad9183SKris Buschelman 30080bad9183SKris Buschelman Level: beginner 30090bad9183SKris Buschelman 3010f0c06035SSatish Balay .seealso: MatCreateSeqBAIJ() 30110bad9183SKris Buschelman M*/ 30120bad9183SKris Buschelman 30138cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_SeqBAIJ_SeqBSTRM(Mat, MatType,MatReuse,Mat*); 3014b24902e0SBarry Smith 3015a23d5eceSKris Buschelman #undef __FUNCT__ 30164a2ae208SSatish Balay #define __FUNCT__ "MatCreate_SeqBAIJ" 30178cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_SeqBAIJ(Mat B) 30182593348eSBarry Smith { 3019dfbe8321SBarry Smith PetscErrorCode ierr; 3020c1ac3661SBarry Smith PetscMPIInt size; 3021b6490206SBarry Smith Mat_SeqBAIJ *b; 30223b2fbd54SBarry Smith 30233a40ed3dSBarry Smith PetscFunctionBegin; 3024ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&size);CHKERRQ(ierr); 3025e32f2f54SBarry Smith if (size > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Comm must be of size 1"); 3026b6490206SBarry Smith 3027b00a9115SJed Brown ierr = PetscNewLog(B,&b);CHKERRQ(ierr); 3028b0a32e0cSBarry Smith B->data = (void*)b; 3029549d3d68SSatish Balay ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 303026fbe8dcSKarl Rupp 30312593348eSBarry Smith b->row = 0; 30322593348eSBarry Smith b->col = 0; 3033e51c0b9cSSatish Balay b->icol = 0; 30342593348eSBarry Smith b->reallocs = 0; 30353e90b805SBarry Smith b->saved_values = 0; 30362593348eSBarry Smith 3037c4992f7dSBarry Smith b->roworiented = PETSC_TRUE; 30382593348eSBarry Smith b->nonew = 0; 30392593348eSBarry Smith b->diag = 0; 30402a1b7f2aSHong Zhang B->spptr = 0; 3041b32cb4a7SJed Brown B->info.nz_unneeded = (PetscReal)b->maxnz*b->bs2; 3042a9817697SBarry Smith b->keepnonzeropattern = PETSC_FALSE; 30434e220ebcSLois Curfman McInnes 3044bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatInvertBlockDiagonal_C",MatInvertBlockDiagonal_SeqBAIJ);CHKERRQ(ierr); 3045bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_SeqBAIJ);CHKERRQ(ierr); 3046bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_SeqBAIJ);CHKERRQ(ierr); 3047bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqBAIJSetColumnIndices_C",MatSeqBAIJSetColumnIndices_SeqBAIJ);CHKERRQ(ierr); 3048bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqbaij_seqaij_C",MatConvert_SeqBAIJ_SeqAIJ);CHKERRQ(ierr); 3049bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqbaij_seqsbaij_C",MatConvert_SeqBAIJ_SeqSBAIJ);CHKERRQ(ierr); 3050bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqBAIJSetPreallocation_C",MatSeqBAIJSetPreallocation_SeqBAIJ);CHKERRQ(ierr); 3051bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqBAIJSetPreallocationCSR_C",MatSeqBAIJSetPreallocationCSR_SeqBAIJ);CHKERRQ(ierr); 3052bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqbaij_seqbstrm_C",MatConvert_SeqBAIJ_SeqBSTRM);CHKERRQ(ierr); 3053bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatIsTranspose_C",MatIsTranspose_SeqBAIJ);CHKERRQ(ierr); 305417667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATSEQBAIJ);CHKERRQ(ierr); 30553a40ed3dSBarry Smith PetscFunctionReturn(0); 30562593348eSBarry Smith } 30572593348eSBarry Smith 30584a2ae208SSatish Balay #undef __FUNCT__ 3059b24902e0SBarry Smith #define __FUNCT__ "MatDuplicateNoCreate_SeqBAIJ" 3060ace3abfcSBarry Smith PetscErrorCode MatDuplicateNoCreate_SeqBAIJ(Mat C,Mat A,MatDuplicateOption cpvalues,PetscBool mallocmatspace) 30612593348eSBarry Smith { 3062b24902e0SBarry Smith Mat_SeqBAIJ *c = (Mat_SeqBAIJ*)C->data,*a = (Mat_SeqBAIJ*)A->data; 30636849ba73SBarry Smith PetscErrorCode ierr; 3064a96a251dSBarry Smith PetscInt i,mbs = a->mbs,nz = a->nz,bs2 = a->bs2; 3065de6a44a3SBarry Smith 30663a40ed3dSBarry Smith PetscFunctionBegin; 3067e32f2f54SBarry Smith if (a->i[mbs] != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Corrupt matrix"); 30682593348eSBarry Smith 30694fd072dbSBarry Smith if (cpvalues == MAT_SHARE_NONZERO_PATTERN) { 30704fd072dbSBarry Smith c->imax = a->imax; 30714fd072dbSBarry Smith c->ilen = a->ilen; 30724fd072dbSBarry Smith c->free_imax_ilen = PETSC_FALSE; 30734fd072dbSBarry Smith } else { 3074dcca6d9dSJed Brown ierr = PetscMalloc2(mbs,&c->imax,mbs,&c->ilen);CHKERRQ(ierr); 30753bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)C,2*mbs*sizeof(PetscInt));CHKERRQ(ierr); 3076b6490206SBarry Smith for (i=0; i<mbs; i++) { 30772593348eSBarry Smith c->imax[i] = a->imax[i]; 30782593348eSBarry Smith c->ilen[i] = a->ilen[i]; 30792593348eSBarry Smith } 30804fd072dbSBarry Smith c->free_imax_ilen = PETSC_TRUE; 30814fd072dbSBarry Smith } 30822593348eSBarry Smith 30832593348eSBarry Smith /* allocate the matrix space */ 308416a2bf60SHong Zhang if (mallocmatspace) { 30854fd072dbSBarry Smith if (cpvalues == MAT_SHARE_NONZERO_PATTERN) { 30861795a4d1SJed Brown ierr = PetscCalloc1(bs2*nz,&c->a);CHKERRQ(ierr); 30873bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)C,a->i[mbs]*bs2*sizeof(PetscScalar));CHKERRQ(ierr); 308826fbe8dcSKarl Rupp 30894fd072dbSBarry Smith c->i = a->i; 30904fd072dbSBarry Smith c->j = a->j; 3091379be0ddSLisandro Dalcin c->singlemalloc = PETSC_FALSE; 3092379be0ddSLisandro Dalcin c->free_a = PETSC_TRUE; 3093379be0ddSLisandro Dalcin c->free_ij = PETSC_FALSE; 30944fd072dbSBarry Smith c->parent = A; 30951e40a84eSLisandro Dalcin C->preallocated = PETSC_TRUE; 30961e40a84eSLisandro Dalcin C->assembled = PETSC_TRUE; 309726fbe8dcSKarl Rupp 30984fd072dbSBarry Smith ierr = PetscObjectReference((PetscObject)A);CHKERRQ(ierr); 30994fd072dbSBarry Smith ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 31004fd072dbSBarry Smith ierr = MatSetOption(C,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 31014fd072dbSBarry Smith } else { 3102dcca6d9dSJed Brown ierr = PetscMalloc3(bs2*nz,&c->a,nz,&c->j,mbs+1,&c->i);CHKERRQ(ierr); 31033bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)C,a->i[mbs]*(bs2*sizeof(PetscScalar)+sizeof(PetscInt))+(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr); 310426fbe8dcSKarl Rupp 3105c4992f7dSBarry Smith c->singlemalloc = PETSC_TRUE; 3106379be0ddSLisandro Dalcin c->free_a = PETSC_TRUE; 31074fd072dbSBarry Smith c->free_ij = PETSC_TRUE; 310826fbe8dcSKarl Rupp 3109c1ac3661SBarry Smith ierr = PetscMemcpy(c->i,a->i,(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr); 3110b6490206SBarry Smith if (mbs > 0) { 3111c1ac3661SBarry Smith ierr = PetscMemcpy(c->j,a->j,nz*sizeof(PetscInt));CHKERRQ(ierr); 31122e8a6d31SBarry Smith if (cpvalues == MAT_COPY_VALUES) { 3113549d3d68SSatish Balay ierr = PetscMemcpy(c->a,a->a,bs2*nz*sizeof(MatScalar));CHKERRQ(ierr); 31142e8a6d31SBarry Smith } else { 3115549d3d68SSatish Balay ierr = PetscMemzero(c->a,bs2*nz*sizeof(MatScalar));CHKERRQ(ierr); 31162593348eSBarry Smith } 31172593348eSBarry Smith } 31181e40a84eSLisandro Dalcin C->preallocated = PETSC_TRUE; 31191e40a84eSLisandro Dalcin C->assembled = PETSC_TRUE; 312016a2bf60SHong Zhang } 31214fd072dbSBarry Smith } 312216a2bf60SHong Zhang 31232593348eSBarry Smith c->roworiented = a->roworiented; 31242593348eSBarry Smith c->nonew = a->nonew; 312526fbe8dcSKarl Rupp 31261e1e43feSBarry Smith ierr = PetscLayoutReference(A->rmap,&C->rmap);CHKERRQ(ierr); 31271e1e43feSBarry Smith ierr = PetscLayoutReference(A->cmap,&C->cmap);CHKERRQ(ierr); 312826fbe8dcSKarl Rupp 31295c9eb25fSBarry Smith c->bs2 = a->bs2; 31305c9eb25fSBarry Smith c->mbs = a->mbs; 31315c9eb25fSBarry Smith c->nbs = a->nbs; 31322593348eSBarry Smith 31332593348eSBarry Smith if (a->diag) { 31344fd072dbSBarry Smith if (cpvalues == MAT_SHARE_NONZERO_PATTERN) { 31354fd072dbSBarry Smith c->diag = a->diag; 31364fd072dbSBarry Smith c->free_diag = PETSC_FALSE; 31374fd072dbSBarry Smith } else { 3138854ce69bSBarry Smith ierr = PetscMalloc1(mbs+1,&c->diag);CHKERRQ(ierr); 31393bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)C,(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr); 314026fbe8dcSKarl Rupp for (i=0; i<mbs; i++) c->diag[i] = a->diag[i]; 31414fd072dbSBarry Smith c->free_diag = PETSC_TRUE; 31424fd072dbSBarry Smith } 314398305bb5SBarry Smith } else c->diag = 0; 314426fbe8dcSKarl Rupp 31452593348eSBarry Smith c->nz = a->nz; 3146f2cbd3d5SJed Brown c->maxnz = a->nz; /* Since we allocate exactly the right amount */ 3147f361c04dSBarry Smith c->solve_work = NULL; 3148f361c04dSBarry Smith c->mult_work = NULL; 3149f361c04dSBarry Smith c->sor_workt = NULL; 3150f361c04dSBarry Smith c->sor_work = NULL; 315188e51ccdSHong Zhang 315288e51ccdSHong Zhang c->compressedrow.use = a->compressedrow.use; 315388e51ccdSHong Zhang c->compressedrow.nrows = a->compressedrow.nrows; 3154cd6b891eSBarry Smith if (a->compressedrow.use) { 315588e51ccdSHong Zhang i = a->compressedrow.nrows; 3156dcca6d9dSJed Brown ierr = PetscMalloc2(i+1,&c->compressedrow.i,i+1,&c->compressedrow.rindex);CHKERRQ(ierr); 31573bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)C,(2*i+1)*sizeof(PetscInt));CHKERRQ(ierr); 315888e51ccdSHong Zhang ierr = PetscMemcpy(c->compressedrow.i,a->compressedrow.i,(i+1)*sizeof(PetscInt));CHKERRQ(ierr); 315988e51ccdSHong Zhang ierr = PetscMemcpy(c->compressedrow.rindex,a->compressedrow.rindex,i*sizeof(PetscInt));CHKERRQ(ierr); 316088e51ccdSHong Zhang } else { 316188e51ccdSHong Zhang c->compressedrow.use = PETSC_FALSE; 31620298fd71SBarry Smith c->compressedrow.i = NULL; 31630298fd71SBarry Smith c->compressedrow.rindex = NULL; 316488e51ccdSHong Zhang } 3165e56f5c9eSBarry Smith C->nonzerostate = A->nonzerostate; 316626fbe8dcSKarl Rupp 3167140e18c1SBarry Smith ierr = PetscFunctionListDuplicate(((PetscObject)A)->qlist,&((PetscObject)C)->qlist);CHKERRQ(ierr); 31685d5aaa0eSBarry Smith ierr = PetscMemcpy(C->ops,A->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 31693a40ed3dSBarry Smith PetscFunctionReturn(0); 31702593348eSBarry Smith } 31712593348eSBarry Smith 31724a2ae208SSatish Balay #undef __FUNCT__ 3173b24902e0SBarry Smith #define __FUNCT__ "MatDuplicate_SeqBAIJ" 3174b24902e0SBarry Smith PetscErrorCode MatDuplicate_SeqBAIJ(Mat A,MatDuplicateOption cpvalues,Mat *B) 3175b24902e0SBarry Smith { 3176b24902e0SBarry Smith PetscErrorCode ierr; 3177b24902e0SBarry Smith 3178b24902e0SBarry Smith PetscFunctionBegin; 3179ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),B);CHKERRQ(ierr); 3180d0f46423SBarry Smith ierr = MatSetSizes(*B,A->rmap->N,A->cmap->n,A->rmap->N,A->cmap->n);CHKERRQ(ierr); 31815c9eb25fSBarry Smith ierr = MatSetType(*B,MATSEQBAIJ);CHKERRQ(ierr); 318298ad0f72SJed Brown ierr = MatDuplicateNoCreate_SeqBAIJ(*B,A,cpvalues,PETSC_TRUE);CHKERRQ(ierr); 3183b24902e0SBarry Smith PetscFunctionReturn(0); 3184b24902e0SBarry Smith } 3185b24902e0SBarry Smith 3186b24902e0SBarry Smith #undef __FUNCT__ 31875bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_SeqBAIJ" 3188112444f4SShri Abhyankar PetscErrorCode MatLoad_SeqBAIJ(Mat newmat,PetscViewer viewer) 3189f501eaabSShri Abhyankar { 3190f501eaabSShri Abhyankar Mat_SeqBAIJ *a; 3191f501eaabSShri Abhyankar PetscErrorCode ierr; 31923059b6faSBarry Smith PetscInt i,nz,header[4],*rowlengths=0,M,N,bs = newmat->rmap->bs; 3193f501eaabSShri Abhyankar PetscInt *mask,mbs,*jj,j,rowcount,nzcount,k,*browlengths,maskcount; 3194f501eaabSShri Abhyankar PetscInt kmax,jcount,block,idx,point,nzcountb,extra_rows,rows,cols; 3195f501eaabSShri Abhyankar PetscInt *masked,nmask,tmp,bs2,ishift; 3196f501eaabSShri Abhyankar PetscMPIInt size; 3197f501eaabSShri Abhyankar int fd; 3198f501eaabSShri Abhyankar PetscScalar *aa; 3199ce94432eSBarry Smith MPI_Comm comm; 3200f501eaabSShri Abhyankar 3201f501eaabSShri Abhyankar PetscFunctionBegin; 3202c98fd787SBarry Smith /* force binary viewer to load .info file if it has not yet done so */ 3203c98fd787SBarry Smith ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr); 3204ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr); 32050298fd71SBarry Smith ierr = PetscOptionsBegin(comm,NULL,"Options for loading SEQBAIJ matrix","Mat");CHKERRQ(ierr); 32060298fd71SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,NULL);CHKERRQ(ierr); 3207f501eaabSShri Abhyankar ierr = PetscOptionsEnd();CHKERRQ(ierr); 32083059b6faSBarry Smith if (bs < 0) bs = 1; 3209f501eaabSShri Abhyankar bs2 = bs*bs; 3210f501eaabSShri Abhyankar 3211f501eaabSShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 3212f501eaabSShri Abhyankar if (size > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"view must have one processor"); 3213f501eaabSShri Abhyankar ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 3214f501eaabSShri Abhyankar ierr = PetscBinaryRead(fd,header,4,PETSC_INT);CHKERRQ(ierr); 3215f501eaabSShri Abhyankar if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not Mat object"); 3216f501eaabSShri Abhyankar M = header[1]; N = header[2]; nz = header[3]; 3217f501eaabSShri Abhyankar 3218f501eaabSShri Abhyankar if (header[3] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as SeqBAIJ"); 3219f501eaabSShri Abhyankar if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices"); 3220f501eaabSShri Abhyankar 3221f501eaabSShri Abhyankar /* 3222f501eaabSShri Abhyankar This code adds extra rows to make sure the number of rows is 3223f501eaabSShri Abhyankar divisible by the blocksize 3224f501eaabSShri Abhyankar */ 3225f501eaabSShri Abhyankar mbs = M/bs; 3226f501eaabSShri Abhyankar extra_rows = bs - M + bs*(mbs); 3227f501eaabSShri Abhyankar if (extra_rows == bs) extra_rows = 0; 3228f501eaabSShri Abhyankar else mbs++; 3229f501eaabSShri Abhyankar if (extra_rows) { 3230f501eaabSShri Abhyankar ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 3231f501eaabSShri Abhyankar } 3232f501eaabSShri Abhyankar 3233f501eaabSShri Abhyankar /* Set global sizes if not already set */ 3234f501eaabSShri Abhyankar if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) { 3235f501eaabSShri Abhyankar ierr = MatSetSizes(newmat,PETSC_DECIDE,PETSC_DECIDE,M+extra_rows,N+extra_rows);CHKERRQ(ierr); 3236f501eaabSShri Abhyankar } else { /* Check if the matrix global sizes are correct */ 3237f501eaabSShri Abhyankar ierr = MatGetSize(newmat,&rows,&cols);CHKERRQ(ierr); 32384c5b953cSHong Zhang if (rows < 0 && cols < 0) { /* user might provide local size instead of global size */ 32394c5b953cSHong Zhang ierr = MatGetLocalSize(newmat,&rows,&cols);CHKERRQ(ierr); 32404c5b953cSHong Zhang } 3241f501eaabSShri Abhyankar if (M != rows || N != cols) SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix in file of different length (%d, %d) than the input matrix (%d, %d)",M,N,rows,cols); 3242f501eaabSShri Abhyankar } 3243f501eaabSShri Abhyankar 3244f501eaabSShri Abhyankar /* read in row lengths */ 3245854ce69bSBarry Smith ierr = PetscMalloc1(M+extra_rows,&rowlengths);CHKERRQ(ierr); 3246f501eaabSShri Abhyankar ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 3247f501eaabSShri Abhyankar for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 3248f501eaabSShri Abhyankar 3249f501eaabSShri Abhyankar /* read in column indices */ 3250854ce69bSBarry Smith ierr = PetscMalloc1(nz+extra_rows,&jj);CHKERRQ(ierr); 3251f501eaabSShri Abhyankar ierr = PetscBinaryRead(fd,jj,nz,PETSC_INT);CHKERRQ(ierr); 3252f501eaabSShri Abhyankar for (i=0; i<extra_rows; i++) jj[nz+i] = M+i; 3253f501eaabSShri Abhyankar 3254f501eaabSShri Abhyankar /* loop over row lengths determining block row lengths */ 32551795a4d1SJed Brown ierr = PetscCalloc1(mbs,&browlengths);CHKERRQ(ierr); 3256dcca6d9dSJed Brown ierr = PetscMalloc2(mbs,&mask,mbs,&masked);CHKERRQ(ierr); 3257f501eaabSShri Abhyankar ierr = PetscMemzero(mask,mbs*sizeof(PetscInt));CHKERRQ(ierr); 3258f501eaabSShri Abhyankar rowcount = 0; 3259f501eaabSShri Abhyankar nzcount = 0; 3260f501eaabSShri Abhyankar for (i=0; i<mbs; i++) { 3261f501eaabSShri Abhyankar nmask = 0; 3262f501eaabSShri Abhyankar for (j=0; j<bs; j++) { 3263f501eaabSShri Abhyankar kmax = rowlengths[rowcount]; 3264f501eaabSShri Abhyankar for (k=0; k<kmax; k++) { 3265f501eaabSShri Abhyankar tmp = jj[nzcount++]/bs; 3266f501eaabSShri Abhyankar if (!mask[tmp]) {masked[nmask++] = tmp; mask[tmp] = 1;} 3267f501eaabSShri Abhyankar } 3268f501eaabSShri Abhyankar rowcount++; 3269f501eaabSShri Abhyankar } 3270f501eaabSShri Abhyankar browlengths[i] += nmask; 3271f501eaabSShri Abhyankar /* zero out the mask elements we set */ 3272f501eaabSShri Abhyankar for (j=0; j<nmask; j++) mask[masked[j]] = 0; 3273f501eaabSShri Abhyankar } 3274f501eaabSShri Abhyankar 32752f480046SShri Abhyankar /* Do preallocation */ 3276f501eaabSShri Abhyankar ierr = MatSeqBAIJSetPreallocation_SeqBAIJ(newmat,bs,0,browlengths);CHKERRQ(ierr); 3277f501eaabSShri Abhyankar a = (Mat_SeqBAIJ*)newmat->data; 3278f501eaabSShri Abhyankar 3279f501eaabSShri Abhyankar /* set matrix "i" values */ 3280f501eaabSShri Abhyankar a->i[0] = 0; 3281f501eaabSShri Abhyankar for (i=1; i<= mbs; i++) { 3282f501eaabSShri Abhyankar a->i[i] = a->i[i-1] + browlengths[i-1]; 3283f501eaabSShri Abhyankar a->ilen[i-1] = browlengths[i-1]; 3284f501eaabSShri Abhyankar } 3285f501eaabSShri Abhyankar a->nz = 0; 3286f501eaabSShri Abhyankar for (i=0; i<mbs; i++) a->nz += browlengths[i]; 3287f501eaabSShri Abhyankar 3288f501eaabSShri Abhyankar /* read in nonzero values */ 3289854ce69bSBarry Smith ierr = PetscMalloc1(nz+extra_rows,&aa);CHKERRQ(ierr); 3290f501eaabSShri Abhyankar ierr = PetscBinaryRead(fd,aa,nz,PETSC_SCALAR);CHKERRQ(ierr); 3291f501eaabSShri Abhyankar for (i=0; i<extra_rows; i++) aa[nz+i] = 1.0; 3292f501eaabSShri Abhyankar 3293f501eaabSShri Abhyankar /* set "a" and "j" values into matrix */ 3294f501eaabSShri Abhyankar nzcount = 0; jcount = 0; 3295f501eaabSShri Abhyankar for (i=0; i<mbs; i++) { 3296f501eaabSShri Abhyankar nzcountb = nzcount; 3297f501eaabSShri Abhyankar nmask = 0; 3298f501eaabSShri Abhyankar for (j=0; j<bs; j++) { 3299f501eaabSShri Abhyankar kmax = rowlengths[i*bs+j]; 3300f501eaabSShri Abhyankar for (k=0; k<kmax; k++) { 3301f501eaabSShri Abhyankar tmp = jj[nzcount++]/bs; 3302f501eaabSShri Abhyankar if (!mask[tmp]) { masked[nmask++] = tmp; mask[tmp] = 1;} 3303f501eaabSShri Abhyankar } 3304f501eaabSShri Abhyankar } 3305f501eaabSShri Abhyankar /* sort the masked values */ 3306f501eaabSShri Abhyankar ierr = PetscSortInt(nmask,masked);CHKERRQ(ierr); 3307f501eaabSShri Abhyankar 3308f501eaabSShri Abhyankar /* set "j" values into matrix */ 3309f501eaabSShri Abhyankar maskcount = 1; 3310f501eaabSShri Abhyankar for (j=0; j<nmask; j++) { 3311f501eaabSShri Abhyankar a->j[jcount++] = masked[j]; 3312f501eaabSShri Abhyankar mask[masked[j]] = maskcount++; 3313f501eaabSShri Abhyankar } 3314f501eaabSShri Abhyankar /* set "a" values into matrix */ 3315f501eaabSShri Abhyankar ishift = bs2*a->i[i]; 3316f501eaabSShri Abhyankar for (j=0; j<bs; j++) { 3317f501eaabSShri Abhyankar kmax = rowlengths[i*bs+j]; 3318f501eaabSShri Abhyankar for (k=0; k<kmax; k++) { 3319f501eaabSShri Abhyankar tmp = jj[nzcountb]/bs; 3320f501eaabSShri Abhyankar block = mask[tmp] - 1; 3321f501eaabSShri Abhyankar point = jj[nzcountb] - bs*tmp; 3322f501eaabSShri Abhyankar idx = ishift + bs2*block + j + bs*point; 3323f501eaabSShri Abhyankar a->a[idx] = (MatScalar)aa[nzcountb++]; 3324f501eaabSShri Abhyankar } 3325f501eaabSShri Abhyankar } 3326f501eaabSShri Abhyankar /* zero out the mask elements we set */ 3327f501eaabSShri Abhyankar for (j=0; j<nmask; j++) mask[masked[j]] = 0; 3328f501eaabSShri Abhyankar } 3329f501eaabSShri Abhyankar if (jcount != a->nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Bad binary matrix"); 3330f501eaabSShri Abhyankar 3331f501eaabSShri Abhyankar ierr = PetscFree(rowlengths);CHKERRQ(ierr); 3332f501eaabSShri Abhyankar ierr = PetscFree(browlengths);CHKERRQ(ierr); 3333f501eaabSShri Abhyankar ierr = PetscFree(aa);CHKERRQ(ierr); 3334f501eaabSShri Abhyankar ierr = PetscFree(jj);CHKERRQ(ierr); 3335f501eaabSShri Abhyankar ierr = PetscFree2(mask,masked);CHKERRQ(ierr); 3336f501eaabSShri Abhyankar 3337f501eaabSShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 3338f501eaabSShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 3339f501eaabSShri Abhyankar PetscFunctionReturn(0); 3340f501eaabSShri Abhyankar } 3341f501eaabSShri Abhyankar 3342f501eaabSShri Abhyankar #undef __FUNCT__ 33434a2ae208SSatish Balay #define __FUNCT__ "MatCreateSeqBAIJ" 3344273d9f13SBarry Smith /*@C 3345273d9f13SBarry Smith MatCreateSeqBAIJ - Creates a sparse matrix in block AIJ (block 3346273d9f13SBarry Smith compressed row) format. For good matrix assembly performance the 3347273d9f13SBarry Smith user should preallocate the matrix storage by setting the parameter nz 3348273d9f13SBarry Smith (or the array nnz). By setting these parameters accurately, performance 3349273d9f13SBarry Smith during matrix assembly can be increased by more than a factor of 50. 33502593348eSBarry Smith 3351273d9f13SBarry Smith Collective on MPI_Comm 3352273d9f13SBarry Smith 3353273d9f13SBarry Smith Input Parameters: 3354273d9f13SBarry Smith + comm - MPI communicator, set to PETSC_COMM_SELF 3355bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 3356bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 3357273d9f13SBarry Smith . m - number of rows 3358273d9f13SBarry Smith . n - number of columns 335935d8aa7fSBarry Smith . nz - number of nonzero blocks per block row (same for all rows) 336035d8aa7fSBarry Smith - nnz - array containing the number of nonzero blocks in the various block rows 33610298fd71SBarry Smith (possibly different for each block row) or NULL 3362273d9f13SBarry Smith 3363273d9f13SBarry Smith Output Parameter: 3364273d9f13SBarry Smith . A - the matrix 3365273d9f13SBarry Smith 3366175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 3367ae1d86c5SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. 3368175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 3369175b88e8SBarry Smith 3370273d9f13SBarry Smith Options Database Keys: 3371273d9f13SBarry Smith . -mat_no_unroll - uses code that does not unroll the loops in the 3372273d9f13SBarry Smith block calculations (much slower) 3373273d9f13SBarry Smith . -mat_block_size - size of the blocks to use 3374273d9f13SBarry Smith 3375273d9f13SBarry Smith Level: intermediate 3376273d9f13SBarry Smith 3377273d9f13SBarry Smith Notes: 3378d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 3379d1be2dadSMatthew Knepley 338049a6f317SBarry Smith If the nnz parameter is given then the nz parameter is ignored 338149a6f317SBarry Smith 338235d8aa7fSBarry Smith A nonzero block is any block that as 1 or more nonzeros in it 338335d8aa7fSBarry Smith 3384273d9f13SBarry Smith The block AIJ format is fully compatible with standard Fortran 77 3385273d9f13SBarry Smith storage. That is, the stored row and column indices can begin at 3386273d9f13SBarry Smith either one (as in Fortran) or zero. See the users' manual for details. 3387273d9f13SBarry Smith 3388273d9f13SBarry Smith Specify the preallocated storage with either nz or nnz (not both). 33890298fd71SBarry Smith Set nz=PETSC_DEFAULT and nnz=NULL for PETSc to control dynamic memory 3390a7f22e61SSatish Balay allocation. See Users-Manual: ch_mat for details. 3391273d9f13SBarry Smith matrices. 3392273d9f13SBarry Smith 339369b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatCreateBAIJ() 3394273d9f13SBarry Smith @*/ 33957087cfbeSBarry Smith PetscErrorCode MatCreateSeqBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt nz,const PetscInt nnz[],Mat *A) 3396273d9f13SBarry Smith { 3397dfbe8321SBarry Smith PetscErrorCode ierr; 3398273d9f13SBarry Smith 3399273d9f13SBarry Smith PetscFunctionBegin; 3400f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 3401f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,m,n);CHKERRQ(ierr); 3402273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr); 3403ab93d7beSBarry Smith ierr = MatSeqBAIJSetPreallocation_SeqBAIJ(*A,bs,nz,(PetscInt*)nnz);CHKERRQ(ierr); 3404273d9f13SBarry Smith PetscFunctionReturn(0); 3405273d9f13SBarry Smith } 3406273d9f13SBarry Smith 34074a2ae208SSatish Balay #undef __FUNCT__ 34084a2ae208SSatish Balay #define __FUNCT__ "MatSeqBAIJSetPreallocation" 3409273d9f13SBarry Smith /*@C 3410273d9f13SBarry Smith MatSeqBAIJSetPreallocation - Sets the block size and expected nonzeros 3411273d9f13SBarry Smith per row in the matrix. For good matrix assembly performance the 3412273d9f13SBarry Smith user should preallocate the matrix storage by setting the parameter nz 3413273d9f13SBarry Smith (or the array nnz). By setting these parameters accurately, performance 3414273d9f13SBarry Smith during matrix assembly can be increased by more than a factor of 50. 3415273d9f13SBarry Smith 3416273d9f13SBarry Smith Collective on MPI_Comm 3417273d9f13SBarry Smith 3418273d9f13SBarry Smith Input Parameters: 34191c4f3114SJed Brown + B - the matrix 3420bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 3421bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 3422273d9f13SBarry Smith . nz - number of block nonzeros per block row (same for all rows) 3423273d9f13SBarry Smith - nnz - array containing the number of block nonzeros in the various block rows 34240298fd71SBarry Smith (possibly different for each block row) or NULL 3425273d9f13SBarry Smith 3426273d9f13SBarry Smith Options Database Keys: 3427273d9f13SBarry Smith . -mat_no_unroll - uses code that does not unroll the loops in the 3428273d9f13SBarry Smith block calculations (much slower) 3429273d9f13SBarry Smith . -mat_block_size - size of the blocks to use 3430273d9f13SBarry Smith 3431273d9f13SBarry Smith Level: intermediate 3432273d9f13SBarry Smith 3433273d9f13SBarry Smith Notes: 343449a6f317SBarry Smith If the nnz parameter is given then the nz parameter is ignored 343549a6f317SBarry Smith 3436aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 3437aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 3438aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 3439aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 3440aa95bbe8SBarry Smith 3441273d9f13SBarry Smith The block AIJ format is fully compatible with standard Fortran 77 3442273d9f13SBarry Smith storage. That is, the stored row and column indices can begin at 3443273d9f13SBarry Smith either one (as in Fortran) or zero. See the users' manual for details. 3444273d9f13SBarry Smith 3445273d9f13SBarry Smith Specify the preallocated storage with either nz or nnz (not both). 34460298fd71SBarry Smith Set nz=PETSC_DEFAULT and nnz=NULL for PETSc to control dynamic memory 3447a7f22e61SSatish Balay allocation. See Users-Manual: ch_mat for details. 3448273d9f13SBarry Smith 344969b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatCreateBAIJ(), MatGetInfo() 3450273d9f13SBarry Smith @*/ 34517087cfbeSBarry Smith PetscErrorCode MatSeqBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt nz,const PetscInt nnz[]) 3452273d9f13SBarry Smith { 34534ac538c5SBarry Smith PetscErrorCode ierr; 3454273d9f13SBarry Smith 3455273d9f13SBarry Smith PetscFunctionBegin; 34566ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 34576ba663aaSJed Brown PetscValidType(B,1); 34586ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 34594ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatSeqBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[]),(B,bs,nz,nnz));CHKERRQ(ierr); 3460273d9f13SBarry Smith PetscFunctionReturn(0); 3461273d9f13SBarry Smith } 3462a1d92eedSBarry Smith 3463c75a6043SHong Zhang #undef __FUNCT__ 3464725b52f3SLisandro Dalcin #define __FUNCT__ "MatSeqBAIJSetPreallocationCSR" 3465725b52f3SLisandro Dalcin /*@C 3466725b52f3SLisandro Dalcin MatSeqBAIJSetPreallocationCSR - Allocates memory for a sparse sequential matrix in AIJ format 3467725b52f3SLisandro Dalcin (the default sequential PETSc format). 3468725b52f3SLisandro Dalcin 3469725b52f3SLisandro Dalcin Collective on MPI_Comm 3470725b52f3SLisandro Dalcin 3471725b52f3SLisandro Dalcin Input Parameters: 34721c4f3114SJed Brown + B - the matrix 3473725b52f3SLisandro Dalcin . i - the indices into j for the start of each local row (starts with zero) 3474725b52f3SLisandro Dalcin . j - the column indices for each local row (starts with zero) these must be sorted for each row 3475725b52f3SLisandro Dalcin - v - optional values in the matrix 3476725b52f3SLisandro Dalcin 3477725b52f3SLisandro Dalcin Level: developer 3478725b52f3SLisandro Dalcin 34793adadaf3SJed Brown Notes: 34803adadaf3SJed Brown The order of the entries in values is specified by the MatOption MAT_ROW_ORIENTED. For example, C programs 34813adadaf3SJed Brown may want to use the default MAT_ROW_ORIENTED=PETSC_TRUE and use an array v[nnz][bs][bs] where the second index is 34823adadaf3SJed Brown over rows within a block and the last index is over columns within a block row. Fortran programs will likely set 34833adadaf3SJed Brown MAT_ROW_ORIENTED=PETSC_FALSE and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a 34843adadaf3SJed Brown block column and the second index is over columns within a block. 34853adadaf3SJed Brown 3486725b52f3SLisandro Dalcin .keywords: matrix, aij, compressed row, sparse 3487725b52f3SLisandro Dalcin 3488725b52f3SLisandro Dalcin .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatSeqBAIJSetPreallocation(), MATSEQBAIJ 3489725b52f3SLisandro Dalcin @*/ 34907087cfbeSBarry Smith PetscErrorCode MatSeqBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 3491725b52f3SLisandro Dalcin { 34924ac538c5SBarry Smith PetscErrorCode ierr; 3493725b52f3SLisandro Dalcin 3494725b52f3SLisandro Dalcin PetscFunctionBegin; 34956ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 34966ba663aaSJed Brown PetscValidType(B,1); 34976ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 34984ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatSeqBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr); 3499725b52f3SLisandro Dalcin PetscFunctionReturn(0); 3500725b52f3SLisandro Dalcin } 3501725b52f3SLisandro Dalcin 3502725b52f3SLisandro Dalcin 3503725b52f3SLisandro Dalcin #undef __FUNCT__ 3504c75a6043SHong Zhang #define __FUNCT__ "MatCreateSeqBAIJWithArrays" 3505c75a6043SHong Zhang /*@ 3506dfb205c3SBarry Smith MatCreateSeqBAIJWithArrays - Creates an sequential BAIJ matrix using matrix elements provided by the user. 3507c75a6043SHong Zhang 3508c75a6043SHong Zhang Collective on MPI_Comm 3509c75a6043SHong Zhang 3510c75a6043SHong Zhang Input Parameters: 3511c75a6043SHong Zhang + comm - must be an MPI communicator of size 1 3512c75a6043SHong Zhang . bs - size of block 3513c75a6043SHong Zhang . m - number of rows 3514c75a6043SHong Zhang . n - number of columns 3515c75a6043SHong Zhang . i - row indices 3516c75a6043SHong Zhang . j - column indices 3517c75a6043SHong Zhang - a - matrix values 3518c75a6043SHong Zhang 3519c75a6043SHong Zhang Output Parameter: 3520c75a6043SHong Zhang . mat - the matrix 3521c75a6043SHong Zhang 3522dfb205c3SBarry Smith Level: advanced 3523c75a6043SHong Zhang 3524c75a6043SHong Zhang Notes: 3525c75a6043SHong Zhang The i, j, and a arrays are not copied by this routine, the user must free these arrays 3526c75a6043SHong Zhang once the matrix is destroyed 3527c75a6043SHong Zhang 3528c75a6043SHong Zhang You cannot set new nonzero locations into this matrix, that will generate an error. 3529c75a6043SHong Zhang 3530c75a6043SHong Zhang The i and j indices are 0 based 3531c75a6043SHong Zhang 3532dfb205c3SBarry Smith When block size is greater than 1 the matrix values must be stored using the BAIJ storage format (see the BAIJ code to determine this). 3533dfb205c3SBarry Smith 35343adadaf3SJed Brown The order of the entries in values is the same as the block compressed sparse row storage format; that is, it is 35353adadaf3SJed Brown the same as a three dimensional array in Fortran values(bs,bs,nnz) that contains the first column of the first 35363adadaf3SJed Brown block, followed by the second column of the first block etc etc. That is, the blocks are contiguous in memory 35373adadaf3SJed Brown with column-major ordering within blocks. 3538dfb205c3SBarry Smith 353969b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateBAIJ(), MatCreateSeqBAIJ() 3540c75a6043SHong Zhang 3541c75a6043SHong Zhang @*/ 35427087cfbeSBarry Smith PetscErrorCode MatCreateSeqBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt *i,PetscInt *j,PetscScalar *a,Mat *mat) 3543c75a6043SHong Zhang { 3544c75a6043SHong Zhang PetscErrorCode ierr; 3545c75a6043SHong Zhang PetscInt ii; 3546c75a6043SHong Zhang Mat_SeqBAIJ *baij; 3547c75a6043SHong Zhang 3548c75a6043SHong Zhang PetscFunctionBegin; 3549e32f2f54SBarry Smith if (bs != 1) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"block size %D > 1 is not supported yet",bs); 3550e32f2f54SBarry Smith if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0"); 3551c75a6043SHong Zhang 3552c75a6043SHong Zhang ierr = MatCreate(comm,mat);CHKERRQ(ierr); 3553c75a6043SHong Zhang ierr = MatSetSizes(*mat,m,n,m,n);CHKERRQ(ierr); 3554c75a6043SHong Zhang ierr = MatSetType(*mat,MATSEQBAIJ);CHKERRQ(ierr); 3555c75a6043SHong Zhang ierr = MatSeqBAIJSetPreallocation_SeqBAIJ(*mat,bs,MAT_SKIP_ALLOCATION,0);CHKERRQ(ierr); 3556c75a6043SHong Zhang baij = (Mat_SeqBAIJ*)(*mat)->data; 3557dcca6d9dSJed Brown ierr = PetscMalloc2(m,&baij->imax,m,&baij->ilen);CHKERRQ(ierr); 35583bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)*mat,2*m*sizeof(PetscInt));CHKERRQ(ierr); 3559c75a6043SHong Zhang 3560c75a6043SHong Zhang baij->i = i; 3561c75a6043SHong Zhang baij->j = j; 3562c75a6043SHong Zhang baij->a = a; 356326fbe8dcSKarl Rupp 3564c75a6043SHong Zhang baij->singlemalloc = PETSC_FALSE; 3565c75a6043SHong Zhang baij->nonew = -1; /*this indicates that inserting a new value in the matrix that generates a new nonzero is an error*/ 3566e6b907acSBarry Smith baij->free_a = PETSC_FALSE; 3567e6b907acSBarry Smith baij->free_ij = PETSC_FALSE; 3568c75a6043SHong Zhang 3569c75a6043SHong Zhang for (ii=0; ii<m; ii++) { 3570c75a6043SHong Zhang baij->ilen[ii] = baij->imax[ii] = i[ii+1] - i[ii]; 3571c75a6043SHong Zhang #if defined(PETSC_USE_DEBUG) 3572e32f2f54SBarry Smith if (i[ii+1] - i[ii] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row length in i (row indices) row = %d length = %d",ii,i[ii+1] - i[ii]); 3573c75a6043SHong Zhang #endif 3574c75a6043SHong Zhang } 3575c75a6043SHong Zhang #if defined(PETSC_USE_DEBUG) 3576c75a6043SHong Zhang for (ii=0; ii<baij->i[m]; ii++) { 3577e32f2f54SBarry Smith if (j[ii] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column index at location = %d index = %d",ii,j[ii]); 3578e32f2f54SBarry Smith if (j[ii] > n - 1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column index to large at location = %d index = %d",ii,j[ii]); 3579c75a6043SHong Zhang } 3580c75a6043SHong Zhang #endif 3581c75a6043SHong Zhang 3582c75a6043SHong Zhang ierr = MatAssemblyBegin(*mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 3583c75a6043SHong Zhang ierr = MatAssemblyEnd(*mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 3584c75a6043SHong Zhang PetscFunctionReturn(0); 3585c75a6043SHong Zhang } 3586bdf6f3fcSHong Zhang 3587bdf6f3fcSHong Zhang #undef __FUNCT__ 3588bdf6f3fcSHong Zhang #define __FUNCT__ "MatCreateMPIMatConcatenateSeqMat_SeqBAIJ" 3589bdf6f3fcSHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_SeqBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 3590bdf6f3fcSHong Zhang { 3591bdf6f3fcSHong Zhang PetscErrorCode ierr; 3592bdf6f3fcSHong Zhang 3593bdf6f3fcSHong Zhang PetscFunctionBegin; 3594bdf6f3fcSHong Zhang ierr = MatCreateMPIMatConcatenateSeqMat_MPIBAIJ(comm,inmat,n,scall,outmat);CHKERRQ(ierr); 3595bdf6f3fcSHong Zhang PetscFunctionReturn(0); 3596bdf6f3fcSHong Zhang } 3597