xref: /petsc/src/mat/impls/baij/seq/baij.c (revision a455e9261d77363e13c8b22a0e0ea831d71fb0ff)
1be1d678aSKris Buschelman 
22593348eSBarry Smith /*
3b6490206SBarry Smith     Defines the basic matrix operations for the BAIJ (compressed row)
42593348eSBarry Smith   matrix storage format.
52593348eSBarry Smith */
6c6db04a5SJed Brown #include <../src/mat/impls/baij/seq/baij.h>  /*I   "petscmat.h"  I*/
7c6db04a5SJed Brown #include <petscblaslapack.h>
8af0996ceSBarry Smith #include <petsc/private/kernels/blockinvert.h>
9af0996ceSBarry Smith #include <petsc/private/kernels/blockmatmult.h>
1043516a2dSKris Buschelman 
1143516a2dSKris Buschelman #undef __FUNCT__
12b01c7715SBarry Smith #define __FUNCT__ "MatInvertBlockDiagonal_SeqBAIJ"
13713ccfa9SJed Brown PetscErrorCode MatInvertBlockDiagonal_SeqBAIJ(Mat A,const PetscScalar **values)
14b01c7715SBarry Smith {
15b01c7715SBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*) A->data;
166849ba73SBarry Smith   PetscErrorCode ierr;
17de80f912SBarry Smith   PetscInt       *diag_offset,i,bs = A->rmap->bs,mbs = a->mbs,ipvt[5],bs2 = bs*bs,*v_pivots;
18de80f912SBarry Smith   MatScalar      *v    = a->a,*odiag,*diag,*mdiag,work[25],*v_work;
1962bba022SBarry Smith   PetscReal      shift = 0.0;
20*a455e926SHong Zhang   PetscBool      allowzeropivot,zeropivotdetected;
21b01c7715SBarry Smith 
22b01c7715SBarry Smith   PetscFunctionBegin;
23*a455e926SHong Zhang   allowzeropivot = PetscNot(A->erroriffailure);
24*a455e926SHong Zhang 
259797317bSBarry Smith   if (a->idiagvalid) {
269797317bSBarry Smith     if (values) *values = a->idiag;
279797317bSBarry Smith     PetscFunctionReturn(0);
289797317bSBarry Smith   }
29b01c7715SBarry Smith   ierr        = MatMarkDiagonal_SeqBAIJ(A);CHKERRQ(ierr);
30b01c7715SBarry Smith   diag_offset = a->diag;
31b01c7715SBarry Smith   if (!a->idiag) {
32785e854fSJed Brown     ierr = PetscMalloc1(2*bs2*mbs,&a->idiag);CHKERRQ(ierr);
333bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)A,2*bs2*mbs*sizeof(PetscScalar));CHKERRQ(ierr);
34b01c7715SBarry Smith   }
35b01c7715SBarry Smith   diag  = a->idiag;
36de80f912SBarry Smith   mdiag = a->idiag+bs2*mbs;
37bbead8a2SBarry Smith   if (values) *values = a->idiag;
38b01c7715SBarry Smith   /* factor and invert each block */
39521d7252SBarry Smith   switch (bs) {
40ab040260SJed Brown   case 1:
41ab040260SJed Brown     for (i=0; i<mbs; i++) {
42ab040260SJed Brown       odiag    = v + 1*diag_offset[i];
43ab040260SJed Brown       diag[0]  = odiag[0];
44ab040260SJed Brown       mdiag[0] = odiag[0];
45d4a378daSJed Brown       diag[0]  = (PetscScalar)1.0 / (diag[0] + shift);
46ab040260SJed Brown       diag    += 1;
47ab040260SJed Brown       mdiag   += 1;
48ab040260SJed Brown     }
49ab040260SJed Brown     break;
50b01c7715SBarry Smith   case 2:
51b01c7715SBarry Smith     for (i=0; i<mbs; i++) {
52b01c7715SBarry Smith       odiag    = v + 4*diag_offset[i];
53b01c7715SBarry Smith       diag[0]  = odiag[0]; diag[1] = odiag[1]; diag[2] = odiag[2]; diag[3] = odiag[3];
54b01c7715SBarry Smith       mdiag[0] = odiag[0]; mdiag[1] = odiag[1]; mdiag[2] = odiag[2]; mdiag[3] = odiag[3];
55*a455e926SHong Zhang       ierr     = PetscKernel_A_gets_inverse_A_2(diag,shift,allowzeropivot,&zeropivotdetected);CHKERRQ(ierr);
562e92ee13SHong Zhang       if (zeropivotdetected) break;
57b01c7715SBarry Smith       diag    += 4;
58b01c7715SBarry Smith       mdiag   += 4;
59b01c7715SBarry Smith     }
60b01c7715SBarry Smith     break;
61b01c7715SBarry Smith   case 3:
62b01c7715SBarry Smith     for (i=0; i<mbs; i++) {
63b01c7715SBarry Smith       odiag    = v + 9*diag_offset[i];
64b01c7715SBarry Smith       diag[0]  = odiag[0]; diag[1] = odiag[1]; diag[2] = odiag[2]; diag[3] = odiag[3];
65b01c7715SBarry Smith       diag[4]  = odiag[4]; diag[5] = odiag[5]; diag[6] = odiag[6]; diag[7] = odiag[7];
66b01c7715SBarry Smith       diag[8]  = odiag[8];
67b01c7715SBarry Smith       mdiag[0] = odiag[0]; mdiag[1] = odiag[1]; mdiag[2] = odiag[2]; mdiag[3] = odiag[3];
68b01c7715SBarry Smith       mdiag[4] = odiag[4]; mdiag[5] = odiag[5]; mdiag[6] = odiag[6]; mdiag[7] = odiag[7];
69b01c7715SBarry Smith       mdiag[8] = odiag[8];
70*a455e926SHong Zhang       ierr     = PetscKernel_A_gets_inverse_A_3(diag,shift,allowzeropivot,&zeropivotdetected);CHKERRQ(ierr);
71d7806518SHong Zhang       if (zeropivotdetected) break;
72b01c7715SBarry Smith       diag    += 9;
73b01c7715SBarry Smith       mdiag   += 9;
74b01c7715SBarry Smith     }
75b01c7715SBarry Smith     break;
76b01c7715SBarry Smith   case 4:
77b01c7715SBarry Smith     for (i=0; i<mbs; i++) {
78b01c7715SBarry Smith       odiag  = v + 16*diag_offset[i];
79b01c7715SBarry Smith       ierr   = PetscMemcpy(diag,odiag,16*sizeof(PetscScalar));CHKERRQ(ierr);
80b01c7715SBarry Smith       ierr   = PetscMemcpy(mdiag,odiag,16*sizeof(PetscScalar));CHKERRQ(ierr);
81*a455e926SHong Zhang       ierr   = PetscKernel_A_gets_inverse_A_4(diag,shift,allowzeropivot,&zeropivotdetected);CHKERRQ(ierr);
822e92ee13SHong Zhang       if (zeropivotdetected) break;
83b01c7715SBarry Smith       diag  += 16;
84b01c7715SBarry Smith       mdiag += 16;
85b01c7715SBarry Smith     }
86b01c7715SBarry Smith     break;
87b01c7715SBarry Smith   case 5:
88b01c7715SBarry Smith     for (i=0; i<mbs; i++) {
89b01c7715SBarry Smith       odiag  = v + 25*diag_offset[i];
90b01c7715SBarry Smith       ierr   = PetscMemcpy(diag,odiag,25*sizeof(PetscScalar));CHKERRQ(ierr);
91b01c7715SBarry Smith       ierr   = PetscMemcpy(mdiag,odiag,25*sizeof(PetscScalar));CHKERRQ(ierr);
92*a455e926SHong Zhang       ierr   = PetscKernel_A_gets_inverse_A_5(diag,ipvt,work,shift,allowzeropivot,&zeropivotdetected);CHKERRQ(ierr);
932e92ee13SHong Zhang       if (zeropivotdetected) break;
94b01c7715SBarry Smith       diag  += 25;
95b01c7715SBarry Smith       mdiag += 25;
96b01c7715SBarry Smith     }
97b01c7715SBarry Smith     break;
98d49b2adcSBarry Smith   case 6:
99d49b2adcSBarry Smith     for (i=0; i<mbs; i++) {
100d49b2adcSBarry Smith       odiag  = v + 36*diag_offset[i];
101d49b2adcSBarry Smith       ierr   = PetscMemcpy(diag,odiag,36*sizeof(PetscScalar));CHKERRQ(ierr);
102d49b2adcSBarry Smith       ierr   = PetscMemcpy(mdiag,odiag,36*sizeof(PetscScalar));CHKERRQ(ierr);
103*a455e926SHong Zhang       ierr   = PetscKernel_A_gets_inverse_A_6(diag,shift,allowzeropivot,&zeropivotdetected);CHKERRQ(ierr);
1042e92ee13SHong Zhang       if (zeropivotdetected) break;
105d49b2adcSBarry Smith       diag  += 36;
106d49b2adcSBarry Smith       mdiag += 36;
107d49b2adcSBarry Smith     }
108d49b2adcSBarry Smith     break;
109de80f912SBarry Smith   case 7:
110de80f912SBarry Smith     for (i=0; i<mbs; i++) {
111de80f912SBarry Smith       odiag  = v + 49*diag_offset[i];
112de80f912SBarry Smith       ierr   = PetscMemcpy(diag,odiag,49*sizeof(PetscScalar));CHKERRQ(ierr);
113de80f912SBarry Smith       ierr   = PetscMemcpy(mdiag,odiag,49*sizeof(PetscScalar));CHKERRQ(ierr);
114*a455e926SHong Zhang       ierr   = PetscKernel_A_gets_inverse_A_7(diag,shift,allowzeropivot,&zeropivotdetected);CHKERRQ(ierr);
1152e92ee13SHong Zhang       if (zeropivotdetected) break;
116de80f912SBarry Smith       diag  += 49;
117de80f912SBarry Smith       mdiag += 49;
118de80f912SBarry Smith     }
119de80f912SBarry Smith     break;
120b01c7715SBarry Smith   default:
121dcca6d9dSJed Brown     ierr = PetscMalloc2(bs,&v_work,bs,&v_pivots);CHKERRQ(ierr);
122de80f912SBarry Smith     for (i=0; i<mbs; i++) {
123de80f912SBarry Smith       odiag  = v + bs2*diag_offset[i];
124de80f912SBarry Smith       ierr   = PetscMemcpy(diag,odiag,bs2*sizeof(PetscScalar));CHKERRQ(ierr);
125de80f912SBarry Smith       ierr   = PetscMemcpy(mdiag,odiag,bs2*sizeof(PetscScalar));CHKERRQ(ierr);
12696b95a6bSBarry Smith       ierr   = PetscKernel_A_gets_inverse_A(bs,diag,v_pivots,v_work);CHKERRQ(ierr);
127de80f912SBarry Smith       diag  += bs2;
128de80f912SBarry Smith       mdiag += bs2;
129de80f912SBarry Smith     }
130de80f912SBarry Smith     ierr = PetscFree2(v_work,v_pivots);CHKERRQ(ierr);
131b01c7715SBarry Smith   }
132b01c7715SBarry Smith   a->idiagvalid = PETSC_TRUE;
133d7806518SHong Zhang   if (zeropivotdetected) {
134d7806518SHong Zhang     A->errortype = MAT_FACTOR_NUMERIC_ZEROPIVOT;
135d7806518SHong Zhang   }
136b01c7715SBarry Smith   PetscFunctionReturn(0);
137b01c7715SBarry Smith }
138b01c7715SBarry Smith 
139b01c7715SBarry Smith #undef __FUNCT__
140e48d15efSToby Isaac #define __FUNCT__ "MatSOR_SeqBAIJ"
141e48d15efSToby Isaac PetscErrorCode MatSOR_SeqBAIJ(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
1426d3beeddSMatthew Knepley {
1436d3beeddSMatthew Knepley   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
144e48d15efSToby Isaac   PetscScalar       *x,*work,*w,*workt,*t;
145e48d15efSToby Isaac   const MatScalar   *v,*aa = a->a, *idiag;
146e48d15efSToby Isaac   const PetscScalar *b,*xb;
1475455b99fSToby Isaac   PetscScalar       s[7], xw[7]={0}; /* avoid some compilers thinking xw is uninitialized */
1486d3beeddSMatthew Knepley   PetscErrorCode    ierr;
149e48d15efSToby Isaac   PetscInt          m = a->mbs,i,i2,nz,bs = A->rmap->bs,bs2 = bs*bs,k,j,idx,it;
150c1ac3661SBarry Smith   const PetscInt    *diag,*ai = a->i,*aj = a->j,*vi;
151b01c7715SBarry Smith 
152b01c7715SBarry Smith   PetscFunctionBegin;
153422a814eSBarry Smith   if (fshift == -1.0) fshift = 0.0; /* negative fshift indicates do not error on zero diagonal; this code never errors on zero diagonal */
154b01c7715SBarry Smith   its = its*lits;
155e32f2f54SBarry Smith   if (flag & SOR_EISENSTAT) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support yet for Eisenstat");
156e32f2f54SBarry Smith   if (its <= 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
157e32f2f54SBarry Smith   if (fshift) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Sorry, no support for diagonal shift");
158e32f2f54SBarry Smith   if (omega != 1.0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor");
159e32f2f54SBarry Smith   if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts");
160b01c7715SBarry Smith 
1610298fd71SBarry Smith   if (!a->idiagvalid) {ierr = MatInvertBlockDiagonal(A,NULL);CHKERRQ(ierr);}
162b01c7715SBarry Smith 
163b2ec919aSToby Isaac   if (!m) PetscFunctionReturn(0);
164b01c7715SBarry Smith   diag  = a->diag;
165b01c7715SBarry Smith   idiag = a->idiag;
166de80f912SBarry Smith   k    = PetscMax(A->rmap->n,A->cmap->n);
167e48d15efSToby Isaac   if (!a->mult_work) {
168f361c04dSBarry Smith     ierr = PetscMalloc1(k+1,&a->mult_work);CHKERRQ(ierr);
169de80f912SBarry Smith   }
1703475c22fSBarry Smith   if (!a->sor_workt) {
171f361c04dSBarry Smith     ierr = PetscMalloc1(k,&a->sor_workt);CHKERRQ(ierr);
172de80f912SBarry Smith   }
173de80f912SBarry Smith   if (!a->sor_work) {
174785e854fSJed Brown     ierr = PetscMalloc1(bs,&a->sor_work);CHKERRQ(ierr);
175de80f912SBarry Smith   }
1763475c22fSBarry Smith   work = a->mult_work;
1773475c22fSBarry Smith   t    = a->sor_workt;
178de80f912SBarry Smith   w    = a->sor_work;
179de80f912SBarry Smith 
180de80f912SBarry Smith   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
181de80f912SBarry Smith   ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
182de80f912SBarry Smith 
183de80f912SBarry Smith   if (flag & SOR_ZERO_INITIAL_GUESS) {
184de80f912SBarry Smith     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) {
185e48d15efSToby Isaac       switch (bs) {
186e48d15efSToby Isaac       case 1:
187e48d15efSToby Isaac         PetscKernel_v_gets_A_times_w_1(x,idiag,b);
188e48d15efSToby Isaac         t[0] = b[0];
189e48d15efSToby Isaac         i2     = 1;
190e48d15efSToby Isaac         idiag += 1;
191e48d15efSToby Isaac         for (i=1; i<m; i++) {
192e48d15efSToby Isaac           v  = aa + ai[i];
193e48d15efSToby Isaac           vi = aj + ai[i];
194e48d15efSToby Isaac           nz = diag[i] - ai[i];
195e48d15efSToby Isaac           s[0] = b[i2];
196e48d15efSToby Isaac           for (j=0; j<nz; j++) {
197e48d15efSToby Isaac             xw[0] = x[vi[j]];
198e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_1(s,(v+j),xw);
199e48d15efSToby Isaac           }
200e48d15efSToby Isaac           t[i2] = s[0];
201e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_1(xw,idiag,s);
202e48d15efSToby Isaac           x[i2]  = xw[0];
203e48d15efSToby Isaac           idiag += 1;
204e48d15efSToby Isaac           i2    += 1;
205e48d15efSToby Isaac         }
206e48d15efSToby Isaac         break;
207e48d15efSToby Isaac       case 2:
208e48d15efSToby Isaac         PetscKernel_v_gets_A_times_w_2(x,idiag,b);
209e48d15efSToby Isaac         t[0] = b[0]; t[1] = b[1];
210e48d15efSToby Isaac         i2     = 2;
211e48d15efSToby Isaac         idiag += 4;
212e48d15efSToby Isaac         for (i=1; i<m; i++) {
213e48d15efSToby Isaac           v  = aa + 4*ai[i];
214e48d15efSToby Isaac           vi = aj + ai[i];
215e48d15efSToby Isaac           nz = diag[i] - ai[i];
216e48d15efSToby Isaac           s[0] = b[i2]; s[1] = b[i2+1];
217e48d15efSToby Isaac           for (j=0; j<nz; j++) {
218e48d15efSToby Isaac             idx = 2*vi[j];
219e48d15efSToby Isaac             it  = 4*j;
220e48d15efSToby Isaac             xw[0] = x[idx]; xw[1] = x[1+idx];
221e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_2(s,(v+it),xw);
222e48d15efSToby Isaac           }
223e48d15efSToby Isaac           t[i2] = s[0]; t[i2+1] = s[1];
224e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_2(xw,idiag,s);
225e48d15efSToby Isaac           x[i2]   = xw[0]; x[i2+1] = xw[1];
226e48d15efSToby Isaac           idiag  += 4;
227e48d15efSToby Isaac           i2     += 2;
228e48d15efSToby Isaac         }
229e48d15efSToby Isaac         break;
230e48d15efSToby Isaac       case 3:
231e48d15efSToby Isaac         PetscKernel_v_gets_A_times_w_3(x,idiag,b);
232e48d15efSToby Isaac         t[0] = b[0]; t[1] = b[1]; t[2] = b[2];
233e48d15efSToby Isaac         i2     = 3;
234e48d15efSToby Isaac         idiag += 9;
235e48d15efSToby Isaac         for (i=1; i<m; i++) {
236e48d15efSToby Isaac           v  = aa + 9*ai[i];
237e48d15efSToby Isaac           vi = aj + ai[i];
238e48d15efSToby Isaac           nz = diag[i] - ai[i];
239e48d15efSToby Isaac           s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2];
240e48d15efSToby Isaac           while (nz--) {
241e48d15efSToby Isaac             idx = 3*(*vi++);
242e48d15efSToby Isaac             xw[0] = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx];
243e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_3(s,v,xw);
244e48d15efSToby Isaac             v  += 9;
245e48d15efSToby Isaac           }
246e48d15efSToby Isaac           t[i2] = s[0]; t[i2+1] = s[1]; t[i2+2] = s[2];
247e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_3(xw,idiag,s);
248e48d15efSToby Isaac           x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2];
249e48d15efSToby Isaac           idiag  += 9;
250e48d15efSToby Isaac           i2     += 3;
251e48d15efSToby Isaac         }
252e48d15efSToby Isaac         break;
253e48d15efSToby Isaac       case 4:
254e48d15efSToby Isaac         PetscKernel_v_gets_A_times_w_4(x,idiag,b);
255e48d15efSToby Isaac         t[0] = b[0]; t[1] = b[1]; t[2] = b[2]; t[3] = b[3];
256e48d15efSToby Isaac         i2     = 4;
257e48d15efSToby Isaac         idiag += 16;
258e48d15efSToby Isaac         for (i=1; i<m; i++) {
259e48d15efSToby Isaac           v  = aa + 16*ai[i];
260e48d15efSToby Isaac           vi = aj + ai[i];
261e48d15efSToby Isaac           nz = diag[i] - ai[i];
262e48d15efSToby Isaac           s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2]; s[3] = b[i2+3];
263e48d15efSToby Isaac           while (nz--) {
264e48d15efSToby Isaac             idx = 4*(*vi++);
265e48d15efSToby Isaac             xw[0]  = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; xw[3] = x[3+idx];
266e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_4(s,v,xw);
267e48d15efSToby Isaac             v  += 16;
268e48d15efSToby Isaac           }
269e48d15efSToby Isaac           t[i2] = s[0]; t[i2+1] = s[1]; t[i2+2] = s[2]; t[i2 + 3] = s[3];
270e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_4(xw,idiag,s);
271e48d15efSToby Isaac           x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2]; x[i2+3] = xw[3];
272e48d15efSToby Isaac           idiag  += 16;
273e48d15efSToby Isaac           i2     += 4;
274e48d15efSToby Isaac         }
275e48d15efSToby Isaac         break;
276e48d15efSToby Isaac       case 5:
277e48d15efSToby Isaac         PetscKernel_v_gets_A_times_w_5(x,idiag,b);
278e48d15efSToby Isaac         t[0] = b[0]; t[1] = b[1]; t[2] = b[2]; t[3] = b[3]; t[4] = b[4];
279e48d15efSToby Isaac         i2     = 5;
280e48d15efSToby Isaac         idiag += 25;
281e48d15efSToby Isaac         for (i=1; i<m; i++) {
282e48d15efSToby Isaac           v  = aa + 25*ai[i];
283e48d15efSToby Isaac           vi = aj + ai[i];
284e48d15efSToby Isaac           nz = diag[i] - ai[i];
285e48d15efSToby Isaac           s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2]; s[3] = b[i2+3]; s[4] = b[i2+4];
286e48d15efSToby Isaac           while (nz--) {
287e48d15efSToby Isaac             idx = 5*(*vi++);
288e48d15efSToby Isaac             xw[0]  = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; xw[3] = x[3+idx]; xw[4] = x[4+idx];
289e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_5(s,v,xw);
290e48d15efSToby Isaac             v  += 25;
291e48d15efSToby Isaac           }
292e48d15efSToby Isaac           t[i2] = s[0]; t[i2+1] = s[1]; t[i2+2] = s[2]; t[i2+3] = s[3]; t[i2+4] = s[4];
293e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_5(xw,idiag,s);
294e48d15efSToby Isaac           x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2]; x[i2+3] = xw[3]; x[i2+4] = xw[4];
295e48d15efSToby Isaac           idiag  += 25;
296e48d15efSToby Isaac           i2     += 5;
297e48d15efSToby Isaac         }
298e48d15efSToby Isaac         break;
299e48d15efSToby Isaac       case 6:
300e48d15efSToby Isaac         PetscKernel_v_gets_A_times_w_6(x,idiag,b);
301e48d15efSToby Isaac         t[0] = b[0]; t[1] = b[1]; t[2] = b[2]; t[3] = b[3]; t[4] = b[4]; t[5] = b[5];
302e48d15efSToby Isaac         i2     = 6;
303e48d15efSToby Isaac         idiag += 36;
304e48d15efSToby Isaac         for (i=1; i<m; i++) {
305e48d15efSToby Isaac           v  = aa + 36*ai[i];
306e48d15efSToby Isaac           vi = aj + ai[i];
307e48d15efSToby Isaac           nz = diag[i] - ai[i];
308e48d15efSToby Isaac           s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2]; s[3] = b[i2+3]; s[4] = b[i2+4]; s[5] = b[i2+5];
309e48d15efSToby Isaac           while (nz--) {
310e48d15efSToby Isaac             idx = 6*(*vi++);
311e48d15efSToby Isaac             xw[0] = x[idx];   xw[1] = x[1+idx]; xw[2] = x[2+idx];
312e48d15efSToby Isaac             xw[3] = x[3+idx]; xw[4] = x[4+idx]; xw[5] = x[5+idx];
313e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_6(s,v,xw);
314e48d15efSToby Isaac             v  += 36;
315e48d15efSToby Isaac           }
316e48d15efSToby Isaac           t[i2]   = s[0]; t[i2+1] = s[1]; t[i2+2] = s[2];
317e48d15efSToby Isaac           t[i2+3] = s[3]; t[i2+4] = s[4]; t[i2+5] = s[5];
318e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_6(xw,idiag,s);
319e48d15efSToby Isaac           x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2]; x[i2+3] = xw[3]; x[i2+4] = xw[4]; x[i2+5] = xw[5];
320e48d15efSToby Isaac           idiag  += 36;
321e48d15efSToby Isaac           i2     += 6;
322e48d15efSToby Isaac         }
323e48d15efSToby Isaac         break;
324e48d15efSToby Isaac       case 7:
325e48d15efSToby Isaac         PetscKernel_v_gets_A_times_w_7(x,idiag,b);
326e48d15efSToby Isaac         t[0] = b[0]; t[1] = b[1]; t[2] = b[2];
327e48d15efSToby Isaac         t[3] = b[3]; t[4] = b[4]; t[5] = b[5]; t[6] = b[6];
328e48d15efSToby Isaac         i2     = 7;
329e48d15efSToby Isaac         idiag += 49;
330e48d15efSToby Isaac         for (i=1; i<m; i++) {
331e48d15efSToby Isaac           v  = aa + 49*ai[i];
332e48d15efSToby Isaac           vi = aj + ai[i];
333e48d15efSToby Isaac           nz = diag[i] - ai[i];
334e48d15efSToby Isaac           s[0] = b[i2];   s[1] = b[i2+1]; s[2] = b[i2+2];
335e48d15efSToby Isaac           s[3] = b[i2+3]; s[4] = b[i2+4]; s[5] = b[i2+5]; s[6] = b[i2+6];
336e48d15efSToby Isaac           while (nz--) {
337e48d15efSToby Isaac             idx = 7*(*vi++);
338e48d15efSToby Isaac             xw[0] = x[idx];   xw[1] = x[1+idx]; xw[2] = x[2+idx];
339e48d15efSToby Isaac             xw[3] = x[3+idx]; xw[4] = x[4+idx]; xw[5] = x[5+idx]; xw[6] = x[6+idx];
340e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_7(s,v,xw);
341e48d15efSToby Isaac             v  += 49;
342e48d15efSToby Isaac           }
343e48d15efSToby Isaac           t[i2]   = s[0]; t[i2+1] = s[1]; t[i2+2] = s[2];
344e48d15efSToby Isaac           t[i2+3] = s[3]; t[i2+4] = s[4]; t[i2+5] = s[5]; t[i2+6] = s[6];
345e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_7(xw,idiag,s);
346e48d15efSToby Isaac           x[i2] =   xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2];
347e48d15efSToby Isaac           x[i2+3] = xw[3]; x[i2+4] = xw[4]; x[i2+5] = xw[5]; x[i2+6] = xw[6];
348e48d15efSToby Isaac           idiag  += 49;
349e48d15efSToby Isaac           i2     += 7;
350e48d15efSToby Isaac         }
351e48d15efSToby Isaac         break;
352e48d15efSToby Isaac       default:
35396b95a6bSBarry Smith         PetscKernel_w_gets_Ar_times_v(bs,bs,b,idiag,x);
354e48d15efSToby Isaac         ierr = PetscMemcpy(t,b,bs*sizeof(PetscScalar));CHKERRQ(ierr);
355de80f912SBarry Smith         i2     = bs;
356de80f912SBarry Smith         idiag += bs2;
357de80f912SBarry Smith         for (i=1; i<m; i++) {
358de80f912SBarry Smith           v  = aa + bs2*ai[i];
359de80f912SBarry Smith           vi = aj + ai[i];
360de80f912SBarry Smith           nz = diag[i] - ai[i];
361de80f912SBarry Smith 
362de80f912SBarry Smith           ierr = PetscMemcpy(w,b+i2,bs*sizeof(PetscScalar));CHKERRQ(ierr);
363de80f912SBarry Smith           /* copy all rows of x that are needed into contiguous space */
364de80f912SBarry Smith           workt = work;
365de80f912SBarry Smith           for (j=0; j<nz; j++) {
366de80f912SBarry Smith             ierr   = PetscMemcpy(workt,x + bs*(*vi++),bs*sizeof(PetscScalar));CHKERRQ(ierr);
367de80f912SBarry Smith             workt += bs;
368de80f912SBarry Smith           }
36996b95a6bSBarry Smith           PetscKernel_w_gets_w_minus_Ar_times_v(bs,bs*nz,w,v,work);
370e48d15efSToby Isaac           ierr = PetscMemcpy(t+i2,w,bs*sizeof(PetscScalar));CHKERRQ(ierr);
37196b95a6bSBarry Smith           PetscKernel_w_gets_Ar_times_v(bs,bs,w,idiag,x+i2);
372de80f912SBarry Smith 
373de80f912SBarry Smith           idiag += bs2;
374de80f912SBarry Smith           i2    += bs;
375de80f912SBarry Smith         }
376e48d15efSToby Isaac         break;
377e48d15efSToby Isaac       }
378de80f912SBarry Smith       /* for logging purposes assume number of nonzero in lower half is 1/2 of total */
379e48d15efSToby Isaac       ierr = PetscLogFlops(1.0*bs2*a->nz);CHKERRQ(ierr);
380e48d15efSToby Isaac       xb = t;
381de80f912SBarry Smith     }
382e48d15efSToby Isaac     else xb = b;
383de80f912SBarry Smith     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
384e48d15efSToby Isaac       idiag = a->idiag+bs2*(a->mbs-1);
385e48d15efSToby Isaac       i2 = bs * (m-1);
386e48d15efSToby Isaac       switch (bs) {
387e48d15efSToby Isaac       case 1:
388e48d15efSToby Isaac         s[0]  = xb[i2];
389e48d15efSToby Isaac         PetscKernel_v_gets_A_times_w_1(xw,idiag,s);
390e48d15efSToby Isaac         x[i2] = xw[0];
391e48d15efSToby Isaac         i2   -= 1;
392e48d15efSToby Isaac         for (i=m-2; i>=0; i--) {
393e48d15efSToby Isaac           v  = aa + (diag[i]+1);
394e48d15efSToby Isaac           vi = aj + diag[i] + 1;
395e48d15efSToby Isaac           nz = ai[i+1] - diag[i] - 1;
396e48d15efSToby Isaac           s[0] = xb[i2];
397e48d15efSToby Isaac           for (j=0; j<nz; j++) {
398e48d15efSToby Isaac             xw[0] = x[vi[j]];
399e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_1(s,(v+j),xw);
400e48d15efSToby Isaac           }
401e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_1(xw,idiag,s);
402e48d15efSToby Isaac           x[i2]  = xw[0];
403e48d15efSToby Isaac           idiag -= 1;
404e48d15efSToby Isaac           i2    -= 1;
405e48d15efSToby Isaac         }
406e48d15efSToby Isaac         break;
407e48d15efSToby Isaac       case 2:
408e48d15efSToby Isaac         s[0]  = xb[i2]; s[1] = xb[i2+1];
409e48d15efSToby Isaac         PetscKernel_v_gets_A_times_w_2(xw,idiag,s);
410e48d15efSToby Isaac         x[i2] = xw[0]; x[i2+1] = xw[1];
411e48d15efSToby Isaac         i2    -= 2;
412e48d15efSToby Isaac         idiag -= 4;
413e48d15efSToby Isaac         for (i=m-2; i>=0; i--) {
414e48d15efSToby Isaac           v  = aa + 4*(diag[i] + 1);
415e48d15efSToby Isaac           vi = aj + diag[i] + 1;
416e48d15efSToby Isaac           nz = ai[i+1] - diag[i] - 1;
417e48d15efSToby Isaac           s[0] = xb[i2]; s[1] = xb[i2+1];
418e48d15efSToby Isaac           for (j=0; j<nz; j++) {
419e48d15efSToby Isaac             idx = 2*vi[j];
420e48d15efSToby Isaac             it  = 4*j;
421e48d15efSToby Isaac             xw[0] = x[idx]; xw[1] = x[1+idx];
422e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_2(s,(v+it),xw);
423e48d15efSToby Isaac           }
424e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_2(xw,idiag,s);
425e48d15efSToby Isaac           x[i2]   = xw[0]; x[i2+1] = xw[1];
426e48d15efSToby Isaac           idiag  -= 4;
427e48d15efSToby Isaac           i2     -= 2;
428e48d15efSToby Isaac         }
429e48d15efSToby Isaac         break;
430e48d15efSToby Isaac       case 3:
431e48d15efSToby Isaac         s[0]  = xb[i2]; s[1] = xb[i2+1]; s[2] = xb[i2+2];
432e48d15efSToby Isaac         PetscKernel_v_gets_A_times_w_3(xw,idiag,s);
433e48d15efSToby Isaac         x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2];
434e48d15efSToby Isaac         i2    -= 3;
435e48d15efSToby Isaac         idiag -= 9;
436e48d15efSToby Isaac         for (i=m-2; i>=0; i--) {
437e48d15efSToby Isaac           v  = aa + 9*(diag[i]+1);
438e48d15efSToby Isaac           vi = aj + diag[i] + 1;
439e48d15efSToby Isaac           nz = ai[i+1] - diag[i] - 1;
440e48d15efSToby Isaac           s[0] = xb[i2]; s[1] = xb[i2+1]; s[2] = xb[i2+2];
441e48d15efSToby Isaac           while (nz--) {
442e48d15efSToby Isaac             idx = 3*(*vi++);
443e48d15efSToby Isaac             xw[0] = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx];
444e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_3(s,v,xw);
445e48d15efSToby Isaac             v  += 9;
446e48d15efSToby Isaac           }
447e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_3(xw,idiag,s);
448e48d15efSToby Isaac           x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2];
449e48d15efSToby Isaac           idiag  -= 9;
450e48d15efSToby Isaac           i2     -= 3;
451e48d15efSToby Isaac         }
452e48d15efSToby Isaac         break;
453e48d15efSToby Isaac       case 4:
454e48d15efSToby Isaac         s[0]  = xb[i2]; s[1] = xb[i2+1]; s[2] = xb[i2+2]; s[3] = xb[i2+3];
455e48d15efSToby Isaac         PetscKernel_v_gets_A_times_w_4(xw,idiag,s);
456e48d15efSToby Isaac         x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2]; x[i2+3] = xw[3];
457e48d15efSToby Isaac         i2    -= 4;
458e48d15efSToby Isaac         idiag -= 16;
459e48d15efSToby Isaac         for (i=m-2; i>=0; i--) {
460e48d15efSToby Isaac           v  = aa + 16*(diag[i]+1);
461e48d15efSToby Isaac           vi = aj + diag[i] + 1;
462e48d15efSToby Isaac           nz = ai[i+1] - diag[i] - 1;
463e48d15efSToby Isaac           s[0] = xb[i2]; s[1] = xb[i2+1]; s[2] = xb[i2+2]; s[3] = xb[i2+3];
464e48d15efSToby Isaac           while (nz--) {
465e48d15efSToby Isaac             idx = 4*(*vi++);
466e48d15efSToby Isaac             xw[0]  = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; xw[3] = x[3+idx];
467e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_4(s,v,xw);
468e48d15efSToby Isaac             v  += 16;
469e48d15efSToby Isaac           }
470e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_4(xw,idiag,s);
471e48d15efSToby Isaac           x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2]; x[i2+3] = xw[3];
472e48d15efSToby Isaac           idiag  -= 16;
473e48d15efSToby Isaac           i2     -= 4;
474e48d15efSToby Isaac         }
475e48d15efSToby Isaac         break;
476e48d15efSToby Isaac       case 5:
477e48d15efSToby Isaac         s[0]  = xb[i2]; s[1] = xb[i2+1]; s[2] = xb[i2+2]; s[3] = xb[i2+3]; s[4] = xb[i2+4];
478e48d15efSToby Isaac         PetscKernel_v_gets_A_times_w_5(xw,idiag,s);
479e48d15efSToby Isaac         x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2]; x[i2+3] = xw[3]; x[i2+4] = xw[4];
480e48d15efSToby Isaac         i2    -= 5;
481e48d15efSToby Isaac         idiag -= 25;
482e48d15efSToby Isaac         for (i=m-2; i>=0; i--) {
483e48d15efSToby Isaac           v  = aa + 25*(diag[i]+1);
484e48d15efSToby Isaac           vi = aj + diag[i] + 1;
485e48d15efSToby Isaac           nz = ai[i+1] - diag[i] - 1;
486e48d15efSToby Isaac           s[0] = xb[i2]; s[1] = xb[i2+1]; s[2] = xb[i2+2]; s[3] = xb[i2+3]; s[4] = xb[i2+4];
487e48d15efSToby Isaac           while (nz--) {
488e48d15efSToby Isaac             idx = 5*(*vi++);
489e48d15efSToby Isaac             xw[0]  = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; xw[3] = x[3+idx]; xw[4] = x[4+idx];
490e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_5(s,v,xw);
491e48d15efSToby Isaac             v  += 25;
492e48d15efSToby Isaac           }
493e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_5(xw,idiag,s);
494e48d15efSToby Isaac           x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2]; x[i2+3] = xw[3]; x[i2+4] = xw[4];
495e48d15efSToby Isaac           idiag  -= 25;
496e48d15efSToby Isaac           i2     -= 5;
497e48d15efSToby Isaac         }
498e48d15efSToby Isaac         break;
499e48d15efSToby Isaac       case 6:
500e48d15efSToby Isaac         s[0]  = xb[i2]; s[1] = xb[i2+1]; s[2] = xb[i2+2]; s[3] = xb[i2+3]; s[4] = xb[i2+4]; s[5] = xb[i2+5];
501e48d15efSToby Isaac         PetscKernel_v_gets_A_times_w_6(xw,idiag,s);
502e48d15efSToby Isaac         x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2]; x[i2+3] = xw[3]; x[i2+4] = xw[4]; x[i2+5] = xw[5];
503e48d15efSToby Isaac         i2    -= 6;
504e48d15efSToby Isaac         idiag -= 36;
505e48d15efSToby Isaac         for (i=m-2; i>=0; i--) {
506e48d15efSToby Isaac           v  = aa + 36*(diag[i]+1);
507e48d15efSToby Isaac           vi = aj + diag[i] + 1;
508e48d15efSToby Isaac           nz = ai[i+1] - diag[i] - 1;
509e48d15efSToby Isaac           s[0] = xb[i2]; s[1] = xb[i2+1]; s[2] = xb[i2+2]; s[3] = xb[i2+3]; s[4] = xb[i2+4]; s[5] = xb[i2+5];
510e48d15efSToby Isaac           while (nz--) {
511e48d15efSToby Isaac             idx = 6*(*vi++);
512e48d15efSToby Isaac             xw[0] = x[idx];   xw[1] = x[1+idx]; xw[2] = x[2+idx];
513e48d15efSToby Isaac             xw[3] = x[3+idx]; xw[4] = x[4+idx]; xw[5] = x[5+idx];
514e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_6(s,v,xw);
515e48d15efSToby Isaac             v  += 36;
516e48d15efSToby Isaac           }
517e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_6(xw,idiag,s);
518e48d15efSToby Isaac           x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2]; x[i2+3] = xw[3]; x[i2+4] = xw[4]; x[i2+5] = xw[5];
519e48d15efSToby Isaac           idiag  -= 36;
520e48d15efSToby Isaac           i2     -= 6;
521e48d15efSToby Isaac         }
522e48d15efSToby Isaac         break;
523e48d15efSToby Isaac       case 7:
524e48d15efSToby Isaac         s[0] = xb[i2];   s[1] = xb[i2+1]; s[2] = xb[i2+2];
525e48d15efSToby Isaac         s[3] = xb[i2+3]; s[4] = xb[i2+4]; s[5] = xb[i2+5]; s[6] = xb[i2+6];
526e48d15efSToby Isaac         PetscKernel_v_gets_A_times_w_7(x,idiag,b);
527e48d15efSToby Isaac         x[i2]   = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2];
528e48d15efSToby Isaac         x[i2+3] = xw[3]; x[i2+4] = xw[4]; x[i2+5] = xw[5]; x[i2+6] = xw[6];
529e48d15efSToby Isaac         i2    -= 7;
530e48d15efSToby Isaac         idiag -= 49;
531e48d15efSToby Isaac         for (i=m-2; i>=0; i--) {
532e48d15efSToby Isaac           v  = aa + 49*(diag[i]+1);
533e48d15efSToby Isaac           vi = aj + diag[i] + 1;
534e48d15efSToby Isaac           nz = ai[i+1] - diag[i] - 1;
535e48d15efSToby Isaac           s[0] = xb[i2];   s[1] = xb[i2+1]; s[2] = xb[i2+2];
536e48d15efSToby Isaac           s[3] = xb[i2+3]; s[4] = xb[i2+4]; s[5] = xb[i2+5]; s[6] = xb[i2+6];
537e48d15efSToby Isaac           while (nz--) {
538e48d15efSToby Isaac             idx = 7*(*vi++);
539e48d15efSToby Isaac             xw[0] = x[idx];   xw[1] = x[1+idx]; xw[2] = x[2+idx];
540e48d15efSToby Isaac             xw[3] = x[3+idx]; xw[4] = x[4+idx]; xw[5] = x[5+idx]; xw[6] = x[6+idx];
541e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_7(s,v,xw);
542e48d15efSToby Isaac             v  += 49;
543e48d15efSToby Isaac           }
544e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_7(xw,idiag,s);
545e48d15efSToby Isaac           x[i2] =   xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2];
546e48d15efSToby Isaac           x[i2+3] = xw[3]; x[i2+4] = xw[4]; x[i2+5] = xw[5]; x[i2+6] = xw[6];
547e48d15efSToby Isaac           idiag  -= 49;
548e48d15efSToby Isaac           i2     -= 7;
549e48d15efSToby Isaac         }
550e48d15efSToby Isaac         break;
551e48d15efSToby Isaac       default:
552e48d15efSToby Isaac         ierr  = PetscMemcpy(w,xb+i2,bs*sizeof(PetscScalar));CHKERRQ(ierr);
55396b95a6bSBarry Smith         PetscKernel_w_gets_Ar_times_v(bs,bs,w,idiag,x+i2);
554de80f912SBarry Smith         i2    -= bs;
555e48d15efSToby Isaac         idiag -= bs2;
556de80f912SBarry Smith         for (i=m-2; i>=0; i--) {
557de80f912SBarry Smith           v  = aa + bs2*(diag[i]+1);
558de80f912SBarry Smith           vi = aj + diag[i] + 1;
559de80f912SBarry Smith           nz = ai[i+1] - diag[i] - 1;
560de80f912SBarry Smith 
561e48d15efSToby Isaac           ierr = PetscMemcpy(w,xb+i2,bs*sizeof(PetscScalar));CHKERRQ(ierr);
562de80f912SBarry Smith           /* copy all rows of x that are needed into contiguous space */
563de80f912SBarry Smith           workt = work;
564de80f912SBarry Smith           for (j=0; j<nz; j++) {
565de80f912SBarry Smith             ierr   = PetscMemcpy(workt,x + bs*(*vi++),bs*sizeof(PetscScalar));CHKERRQ(ierr);
566de80f912SBarry Smith             workt += bs;
567de80f912SBarry Smith           }
56896b95a6bSBarry Smith           PetscKernel_w_gets_w_minus_Ar_times_v(bs,bs*nz,w,v,work);
56996b95a6bSBarry Smith           PetscKernel_w_gets_Ar_times_v(bs,bs,w,idiag,x+i2);
570e48d15efSToby Isaac 
571de80f912SBarry Smith           idiag -= bs2;
572de80f912SBarry Smith           i2    -= bs;
573de80f912SBarry Smith         }
574e48d15efSToby Isaac         break;
575e48d15efSToby Isaac       }
576de80f912SBarry Smith       ierr = PetscLogFlops(1.0*bs2*(a->nz));CHKERRQ(ierr);
577de80f912SBarry Smith     }
578e48d15efSToby Isaac     its--;
579e48d15efSToby Isaac   }
580e48d15efSToby Isaac   while (its--) {
581e48d15efSToby Isaac     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) {
582e48d15efSToby Isaac       idiag = a->idiag;
583e48d15efSToby Isaac       i2 = 0;
584e48d15efSToby Isaac       switch (bs) {
585e48d15efSToby Isaac       case 1:
586e48d15efSToby Isaac         for (i=0; i<m; i++) {
587e48d15efSToby Isaac           v  = aa + ai[i];
588e48d15efSToby Isaac           vi = aj + ai[i];
589e48d15efSToby Isaac           nz = ai[i+1] - ai[i];
590e48d15efSToby Isaac           s[0] = b[i2];
591e48d15efSToby Isaac           for (j=0; j<nz; j++) {
592e48d15efSToby Isaac             xw[0] = x[vi[j]];
593e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_1(s,(v+j),xw);
594e48d15efSToby Isaac           }
595e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_1(xw,idiag,s);
596e48d15efSToby Isaac           x[i2] += xw[0];
597e48d15efSToby Isaac           idiag += 1;
598e48d15efSToby Isaac           i2    += 1;
599e48d15efSToby Isaac         }
600e48d15efSToby Isaac         break;
601e48d15efSToby Isaac       case 2:
602e48d15efSToby Isaac         for (i=0; i<m; i++) {
603e48d15efSToby Isaac           v  = aa + 4*ai[i];
604e48d15efSToby Isaac           vi = aj + ai[i];
605e48d15efSToby Isaac           nz = ai[i+1] - ai[i];
606e48d15efSToby Isaac           s[0] = b[i2]; s[1] = b[i2+1];
607e48d15efSToby Isaac           for (j=0; j<nz; j++) {
608e48d15efSToby Isaac             idx = 2*vi[j];
609e48d15efSToby Isaac             it  = 4*j;
610e48d15efSToby Isaac             xw[0] = x[idx]; xw[1] = x[1+idx];
611e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_2(s,(v+it),xw);
612e48d15efSToby Isaac           }
613e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_2(xw,idiag,s);
614e48d15efSToby Isaac           x[i2]  += xw[0]; x[i2+1] += xw[1];
615e48d15efSToby Isaac           idiag  += 4;
616e48d15efSToby Isaac           i2     += 2;
617e48d15efSToby Isaac         }
618e48d15efSToby Isaac         break;
619e48d15efSToby Isaac       case 3:
620e48d15efSToby Isaac         for (i=0; i<m; i++) {
621e48d15efSToby Isaac           v  = aa + 9*ai[i];
622e48d15efSToby Isaac           vi = aj + ai[i];
623e48d15efSToby Isaac           nz = ai[i+1] - ai[i];
624e48d15efSToby Isaac           s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2];
625e48d15efSToby Isaac           while (nz--) {
626e48d15efSToby Isaac             idx = 3*(*vi++);
627e48d15efSToby Isaac             xw[0] = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx];
628e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_3(s,v,xw);
629e48d15efSToby Isaac             v  += 9;
630e48d15efSToby Isaac           }
631e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_3(xw,idiag,s);
632e48d15efSToby Isaac           x[i2] += xw[0]; x[i2+1] += xw[1]; x[i2+2] += xw[2];
633e48d15efSToby Isaac           idiag  += 9;
634e48d15efSToby Isaac           i2     += 3;
635e48d15efSToby Isaac         }
636e48d15efSToby Isaac         break;
637e48d15efSToby Isaac       case 4:
638e48d15efSToby Isaac         for (i=0; i<m; i++) {
639e48d15efSToby Isaac           v  = aa + 16*ai[i];
640e48d15efSToby Isaac           vi = aj + ai[i];
641e48d15efSToby Isaac           nz = ai[i+1] - ai[i];
642e48d15efSToby Isaac           s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2]; s[3] = b[i2+3];
643e48d15efSToby Isaac           while (nz--) {
644e48d15efSToby Isaac             idx = 4*(*vi++);
645e48d15efSToby Isaac             xw[0]  = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; xw[3] = x[3+idx];
646e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_4(s,v,xw);
647e48d15efSToby Isaac             v  += 16;
648e48d15efSToby Isaac           }
649e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_4(xw,idiag,s);
650e48d15efSToby Isaac           x[i2] += xw[0]; x[i2+1] += xw[1]; x[i2+2] += xw[2]; x[i2+3] += xw[3];
651e48d15efSToby Isaac           idiag  += 16;
652e48d15efSToby Isaac           i2     += 4;
653e48d15efSToby Isaac         }
654e48d15efSToby Isaac         break;
655e48d15efSToby Isaac       case 5:
656e48d15efSToby Isaac         for (i=0; i<m; i++) {
657e48d15efSToby Isaac           v  = aa + 25*ai[i];
658e48d15efSToby Isaac           vi = aj + ai[i];
659e48d15efSToby Isaac           nz = ai[i+1] - ai[i];
660e48d15efSToby Isaac           s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2]; s[3] = b[i2+3]; s[4] = b[i2+4];
661e48d15efSToby Isaac           while (nz--) {
662e48d15efSToby Isaac             idx = 5*(*vi++);
663e48d15efSToby Isaac             xw[0]  = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; xw[3] = x[3+idx]; xw[4] = x[4+idx];
664e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_5(s,v,xw);
665e48d15efSToby Isaac             v  += 25;
666e48d15efSToby Isaac           }
667e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_5(xw,idiag,s);
668e48d15efSToby Isaac           x[i2] += xw[0]; x[i2+1] += xw[1]; x[i2+2] += xw[2]; x[i2+3] += xw[3]; x[i2+4] += xw[4];
669e48d15efSToby Isaac           idiag  += 25;
670e48d15efSToby Isaac           i2     += 5;
671e48d15efSToby Isaac         }
672e48d15efSToby Isaac         break;
673e48d15efSToby Isaac       case 6:
674e48d15efSToby Isaac         for (i=0; i<m; i++) {
675e48d15efSToby Isaac           v  = aa + 36*ai[i];
676e48d15efSToby Isaac           vi = aj + ai[i];
677e48d15efSToby Isaac           nz = ai[i+1] - ai[i];
678e48d15efSToby Isaac           s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2]; s[3] = b[i2+3]; s[4] = b[i2+4]; s[5] = b[i2+5];
679e48d15efSToby Isaac           while (nz--) {
680e48d15efSToby Isaac             idx = 6*(*vi++);
681e48d15efSToby Isaac             xw[0] = x[idx];   xw[1] = x[1+idx]; xw[2] = x[2+idx];
682e48d15efSToby Isaac             xw[3] = x[3+idx]; xw[4] = x[4+idx]; xw[5] = x[5+idx];
683e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_6(s,v,xw);
684e48d15efSToby Isaac             v  += 36;
685e48d15efSToby Isaac           }
686e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_6(xw,idiag,s);
687e48d15efSToby Isaac           x[i2] += xw[0]; x[i2+1] += xw[1]; x[i2+2] += xw[2];
688e48d15efSToby Isaac           x[i2+3] += xw[3]; x[i2+4] += xw[4]; x[i2+5] += xw[5];
689e48d15efSToby Isaac           idiag  += 36;
690e48d15efSToby Isaac           i2     += 6;
691e48d15efSToby Isaac         }
692e48d15efSToby Isaac         break;
693e48d15efSToby Isaac       case 7:
694e48d15efSToby Isaac         for (i=0; i<m; i++) {
695e48d15efSToby Isaac           v  = aa + 49*ai[i];
696e48d15efSToby Isaac           vi = aj + ai[i];
697e48d15efSToby Isaac           nz = ai[i+1] - ai[i];
698e48d15efSToby Isaac           s[0] = b[i2];   s[1] = b[i2+1]; s[2] = b[i2+2];
699e48d15efSToby Isaac           s[3] = b[i2+3]; s[4] = b[i2+4]; s[5] = b[i2+5]; s[6] = b[i2+6];
700e48d15efSToby Isaac           while (nz--) {
701e48d15efSToby Isaac             idx = 7*(*vi++);
702e48d15efSToby Isaac             xw[0] = x[idx];   xw[1] = x[1+idx]; xw[2] = x[2+idx];
703e48d15efSToby Isaac             xw[3] = x[3+idx]; xw[4] = x[4+idx]; xw[5] = x[5+idx]; xw[6] = x[6+idx];
704e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_7(s,v,xw);
705e48d15efSToby Isaac             v  += 49;
706e48d15efSToby Isaac           }
707e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_7(xw,idiag,s);
708e48d15efSToby Isaac           x[i2]   += xw[0]; x[i2+1] += xw[1]; x[i2+2] += xw[2];
709e48d15efSToby Isaac           x[i2+3] += xw[3]; x[i2+4] += xw[4]; x[i2+5] += xw[5]; x[i2+6] += xw[6];
710e48d15efSToby Isaac           idiag  += 49;
711e48d15efSToby Isaac           i2     += 7;
712e48d15efSToby Isaac         }
713e48d15efSToby Isaac         break;
714e48d15efSToby Isaac       default:
715e48d15efSToby Isaac         for (i=0; i<m; i++) {
716e48d15efSToby Isaac           v  = aa + bs2*ai[i];
717e48d15efSToby Isaac           vi = aj + ai[i];
718e48d15efSToby Isaac           nz = ai[i+1] - ai[i];
719e48d15efSToby Isaac 
720e48d15efSToby Isaac           ierr = PetscMemcpy(w,b+i2,bs*sizeof(PetscScalar));CHKERRQ(ierr);
721e48d15efSToby Isaac           /* copy all rows of x that are needed into contiguous space */
722e48d15efSToby Isaac           workt = work;
723e48d15efSToby Isaac           for (j=0; j<nz; j++) {
724e48d15efSToby Isaac             ierr   = PetscMemcpy(workt,x + bs*(*vi++),bs*sizeof(PetscScalar));CHKERRQ(ierr);
725e48d15efSToby Isaac             workt += bs;
726e48d15efSToby Isaac           }
727e48d15efSToby Isaac           PetscKernel_w_gets_w_minus_Ar_times_v(bs,bs*nz,w,v,work);
728e48d15efSToby Isaac           PetscKernel_w_gets_w_plus_Ar_times_v(bs,bs,w,idiag,x+i2);
729e48d15efSToby Isaac 
730e48d15efSToby Isaac           idiag += bs2;
731e48d15efSToby Isaac           i2    += bs;
732e48d15efSToby Isaac         }
733e48d15efSToby Isaac         break;
734e48d15efSToby Isaac       }
735e48d15efSToby Isaac       ierr = PetscLogFlops(2.0*bs2*a->nz);CHKERRQ(ierr);
736e48d15efSToby Isaac     }
737e48d15efSToby Isaac     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
738e48d15efSToby Isaac       idiag = a->idiag+bs2*(a->mbs-1);
739e48d15efSToby Isaac       i2 = bs * (m-1);
740e48d15efSToby Isaac       switch (bs) {
741e48d15efSToby Isaac       case 1:
742e48d15efSToby Isaac         for (i=m-1; i>=0; i--) {
743e48d15efSToby Isaac           v  = aa + ai[i];
744e48d15efSToby Isaac           vi = aj + ai[i];
745e48d15efSToby Isaac           nz = ai[i+1] - ai[i];
746e48d15efSToby Isaac           s[0] = b[i2];
747e48d15efSToby Isaac           for (j=0; j<nz; j++) {
748e48d15efSToby Isaac             xw[0] = x[vi[j]];
749e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_1(s,(v+j),xw);
750e48d15efSToby Isaac           }
751e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_1(xw,idiag,s);
752e48d15efSToby Isaac           x[i2] += xw[0];
753e48d15efSToby Isaac           idiag -= 1;
754e48d15efSToby Isaac           i2    -= 1;
755e48d15efSToby Isaac         }
756e48d15efSToby Isaac         break;
757e48d15efSToby Isaac       case 2:
758e48d15efSToby Isaac         for (i=m-1; i>=0; i--) {
759e48d15efSToby Isaac           v  = aa + 4*ai[i];
760e48d15efSToby Isaac           vi = aj + ai[i];
761e48d15efSToby Isaac           nz = ai[i+1] - ai[i];
762e48d15efSToby Isaac           s[0] = b[i2]; s[1] = b[i2+1];
763e48d15efSToby Isaac           for (j=0; j<nz; j++) {
764e48d15efSToby Isaac             idx = 2*vi[j];
765e48d15efSToby Isaac             it  = 4*j;
766e48d15efSToby Isaac             xw[0] = x[idx]; xw[1] = x[1+idx];
767e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_2(s,(v+it),xw);
768e48d15efSToby Isaac           }
769e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_2(xw,idiag,s);
770e48d15efSToby Isaac           x[i2]  += xw[0]; x[i2+1] += xw[1];
771e48d15efSToby Isaac           idiag  -= 4;
772e48d15efSToby Isaac           i2     -= 2;
773e48d15efSToby Isaac         }
774e48d15efSToby Isaac         break;
775e48d15efSToby Isaac       case 3:
776e48d15efSToby Isaac         for (i=m-1; i>=0; i--) {
777e48d15efSToby Isaac           v  = aa + 9*ai[i];
778e48d15efSToby Isaac           vi = aj + ai[i];
779e48d15efSToby Isaac           nz = ai[i+1] - ai[i];
780e48d15efSToby Isaac           s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2];
781e48d15efSToby Isaac           while (nz--) {
782e48d15efSToby Isaac             idx = 3*(*vi++);
783e48d15efSToby Isaac             xw[0] = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx];
784e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_3(s,v,xw);
785e48d15efSToby Isaac             v  += 9;
786e48d15efSToby Isaac           }
787e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_3(xw,idiag,s);
788e48d15efSToby Isaac           x[i2] += xw[0]; x[i2+1] += xw[1]; x[i2+2] += xw[2];
789e48d15efSToby Isaac           idiag  -= 9;
790e48d15efSToby Isaac           i2     -= 3;
791e48d15efSToby Isaac         }
792e48d15efSToby Isaac         break;
793e48d15efSToby Isaac       case 4:
794e48d15efSToby Isaac         for (i=m-1; i>=0; i--) {
795e48d15efSToby Isaac           v  = aa + 16*ai[i];
796e48d15efSToby Isaac           vi = aj + ai[i];
797e48d15efSToby Isaac           nz = ai[i+1] - ai[i];
798e48d15efSToby Isaac           s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2]; s[3] = b[i2+3];
799e48d15efSToby Isaac           while (nz--) {
800e48d15efSToby Isaac             idx = 4*(*vi++);
801e48d15efSToby Isaac             xw[0]  = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; xw[3] = x[3+idx];
802e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_4(s,v,xw);
803e48d15efSToby Isaac             v  += 16;
804e48d15efSToby Isaac           }
805e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_4(xw,idiag,s);
806e48d15efSToby Isaac           x[i2] += xw[0]; x[i2+1] += xw[1]; x[i2+2] += xw[2]; x[i2+3] += xw[3];
807e48d15efSToby Isaac           idiag  -= 16;
808e48d15efSToby Isaac           i2     -= 4;
809e48d15efSToby Isaac         }
810e48d15efSToby Isaac         break;
811e48d15efSToby Isaac       case 5:
812e48d15efSToby Isaac         for (i=m-1; i>=0; i--) {
813e48d15efSToby Isaac           v  = aa + 25*ai[i];
814e48d15efSToby Isaac           vi = aj + ai[i];
815e48d15efSToby Isaac           nz = ai[i+1] - ai[i];
816e48d15efSToby Isaac           s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2]; s[3] = b[i2+3]; s[4] = b[i2+4];
817e48d15efSToby Isaac           while (nz--) {
818e48d15efSToby Isaac             idx = 5*(*vi++);
819e48d15efSToby Isaac             xw[0]  = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; xw[3] = x[3+idx]; xw[4] = x[4+idx];
820e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_5(s,v,xw);
821e48d15efSToby Isaac             v  += 25;
822e48d15efSToby Isaac           }
823e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_5(xw,idiag,s);
824e48d15efSToby Isaac           x[i2] += xw[0]; x[i2+1] += xw[1]; x[i2+2] += xw[2]; x[i2+3] += xw[3]; x[i2+4] += xw[4];
825e48d15efSToby Isaac           idiag  -= 25;
826e48d15efSToby Isaac           i2     -= 5;
827e48d15efSToby Isaac         }
828e48d15efSToby Isaac         break;
829e48d15efSToby Isaac       case 6:
830e48d15efSToby Isaac         for (i=m-1; i>=0; i--) {
831e48d15efSToby Isaac           v  = aa + 36*ai[i];
832e48d15efSToby Isaac           vi = aj + ai[i];
833e48d15efSToby Isaac           nz = ai[i+1] - ai[i];
834e48d15efSToby Isaac           s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2]; s[3] = b[i2+3]; s[4] = b[i2+4]; s[5] = b[i2+5];
835e48d15efSToby Isaac           while (nz--) {
836e48d15efSToby Isaac             idx = 6*(*vi++);
837e48d15efSToby Isaac             xw[0] = x[idx];   xw[1] = x[1+idx]; xw[2] = x[2+idx];
838e48d15efSToby Isaac             xw[3] = x[3+idx]; xw[4] = x[4+idx]; xw[5] = x[5+idx];
839e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_6(s,v,xw);
840e48d15efSToby Isaac             v  += 36;
841e48d15efSToby Isaac           }
842e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_6(xw,idiag,s);
843e48d15efSToby Isaac           x[i2] += xw[0]; x[i2+1] += xw[1]; x[i2+2] += xw[2];
844e48d15efSToby Isaac           x[i2+3] += xw[3]; x[i2+4] += xw[4]; x[i2+5] += xw[5];
845e48d15efSToby Isaac           idiag  -= 36;
846e48d15efSToby Isaac           i2     -= 6;
847e48d15efSToby Isaac         }
848e48d15efSToby Isaac         break;
849e48d15efSToby Isaac       case 7:
850e48d15efSToby Isaac         for (i=m-1; i>=0; i--) {
851e48d15efSToby Isaac           v  = aa + 49*ai[i];
852e48d15efSToby Isaac           vi = aj + ai[i];
853e48d15efSToby Isaac           nz = ai[i+1] - ai[i];
854e48d15efSToby Isaac           s[0] = b[i2];   s[1] = b[i2+1]; s[2] = b[i2+2];
855e48d15efSToby Isaac           s[3] = b[i2+3]; s[4] = b[i2+4]; s[5] = b[i2+5]; s[6] = b[i2+6];
856e48d15efSToby Isaac           while (nz--) {
857e48d15efSToby Isaac             idx = 7*(*vi++);
858e48d15efSToby Isaac             xw[0] = x[idx];   xw[1] = x[1+idx]; xw[2] = x[2+idx];
859e48d15efSToby Isaac             xw[3] = x[3+idx]; xw[4] = x[4+idx]; xw[5] = x[5+idx]; xw[6] = x[6+idx];
860e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_7(s,v,xw);
861e48d15efSToby Isaac             v  += 49;
862e48d15efSToby Isaac           }
863e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_7(xw,idiag,s);
864e48d15efSToby Isaac           x[i2] +=   xw[0]; x[i2+1] += xw[1]; x[i2+2] += xw[2];
865e48d15efSToby Isaac           x[i2+3] += xw[3]; x[i2+4] += xw[4]; x[i2+5] += xw[5]; x[i2+6] += xw[6];
866e48d15efSToby Isaac           idiag  -= 49;
867e48d15efSToby Isaac           i2     -= 7;
868e48d15efSToby Isaac         }
869e48d15efSToby Isaac         break;
870e48d15efSToby Isaac       default:
871e48d15efSToby Isaac         for (i=m-1; i>=0; i--) {
872e48d15efSToby Isaac           v  = aa + bs2*ai[i];
873e48d15efSToby Isaac           vi = aj + ai[i];
874e48d15efSToby Isaac           nz = ai[i+1] - ai[i];
875e48d15efSToby Isaac 
876e48d15efSToby Isaac           ierr = PetscMemcpy(w,b+i2,bs*sizeof(PetscScalar));CHKERRQ(ierr);
877e48d15efSToby Isaac           /* copy all rows of x that are needed into contiguous space */
878e48d15efSToby Isaac           workt = work;
879e48d15efSToby Isaac           for (j=0; j<nz; j++) {
880e48d15efSToby Isaac             ierr   = PetscMemcpy(workt,x + bs*(*vi++),bs*sizeof(PetscScalar));CHKERRQ(ierr);
881e48d15efSToby Isaac             workt += bs;
882e48d15efSToby Isaac           }
883e48d15efSToby Isaac           PetscKernel_w_gets_w_minus_Ar_times_v(bs,bs*nz,w,v,work);
884e48d15efSToby Isaac           PetscKernel_w_gets_w_plus_Ar_times_v(bs,bs,w,idiag,x+i2);
885e48d15efSToby Isaac 
886e48d15efSToby Isaac           idiag -= bs2;
887e48d15efSToby Isaac           i2    -= bs;
888e48d15efSToby Isaac         }
889e48d15efSToby Isaac         break;
890e48d15efSToby Isaac       }
891e48d15efSToby Isaac       ierr = PetscLogFlops(2.0*bs2*(a->nz));CHKERRQ(ierr);
892e48d15efSToby Isaac     }
893e48d15efSToby Isaac   }
894de80f912SBarry Smith   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
895de80f912SBarry Smith   ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
896de80f912SBarry Smith   PetscFunctionReturn(0);
897de80f912SBarry Smith }
898de80f912SBarry Smith 
899e48d15efSToby Isaac 
900af674e45SBarry Smith /*
90181824310SBarry Smith     Special version for direct calls from Fortran (Used in PETSc-fun3d)
902af674e45SBarry Smith */
903af674e45SBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS)
904af674e45SBarry Smith #define matsetvaluesblocked4_ MATSETVALUESBLOCKED4
905af674e45SBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
906af674e45SBarry Smith #define matsetvaluesblocked4_ matsetvaluesblocked4
907af674e45SBarry Smith #endif
908af674e45SBarry Smith 
909af674e45SBarry Smith #undef __FUNCT__
910af674e45SBarry Smith #define __FUNCT__ "matsetvaluesblocked4_"
9118cc058d9SJed Brown PETSC_EXTERN void matsetvaluesblocked4_(Mat *AA,PetscInt *mm,const PetscInt im[],PetscInt *nn,const PetscInt in[],const PetscScalar v[])
912af674e45SBarry Smith {
913af674e45SBarry Smith   Mat               A  = *AA;
914af674e45SBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
915c1ac3661SBarry Smith   PetscInt          *rp,k,low,high,t,ii,jj,row,nrow,i,col,l,N,m = *mm,n = *nn;
916c1ac3661SBarry Smith   PetscInt          *ai    =a->i,*ailen=a->ilen;
91717ec6a02SBarry Smith   PetscInt          *aj    =a->j,stepval,lastcol = -1;
918f15d580aSBarry Smith   const PetscScalar *value = v;
9194bb09213Spetsc   MatScalar         *ap,*aa = a->a,*bap;
920af674e45SBarry Smith 
921af674e45SBarry Smith   PetscFunctionBegin;
922ce94432eSBarry Smith   if (A->rmap->bs != 4) SETERRABORT(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Can only be called with a block size of 4");
923af674e45SBarry Smith   stepval = (n-1)*4;
924af674e45SBarry Smith   for (k=0; k<m; k++) { /* loop over added rows */
925af674e45SBarry Smith     row  = im[k];
926af674e45SBarry Smith     rp   = aj + ai[row];
927af674e45SBarry Smith     ap   = aa + 16*ai[row];
928af674e45SBarry Smith     nrow = ailen[row];
929af674e45SBarry Smith     low  = 0;
93017ec6a02SBarry Smith     high = nrow;
931af674e45SBarry Smith     for (l=0; l<n; l++) { /* loop over added columns */
932af674e45SBarry Smith       col = in[l];
933db4deed7SKarl Rupp       if (col <= lastcol)  low = 0;
934db4deed7SKarl Rupp       else                high = nrow;
93517ec6a02SBarry Smith       lastcol = col;
9361e3347e8SBarry Smith       value   = v + k*(stepval+4 + l)*4;
937af674e45SBarry Smith       while (high-low > 7) {
938af674e45SBarry Smith         t = (low+high)/2;
939af674e45SBarry Smith         if (rp[t] > col) high = t;
940af674e45SBarry Smith         else             low  = t;
941af674e45SBarry Smith       }
942af674e45SBarry Smith       for (i=low; i<high; i++) {
943af674e45SBarry Smith         if (rp[i] > col) break;
944af674e45SBarry Smith         if (rp[i] == col) {
945af674e45SBarry Smith           bap = ap +  16*i;
946af674e45SBarry Smith           for (ii=0; ii<4; ii++,value+=stepval) {
947af674e45SBarry Smith             for (jj=ii; jj<16; jj+=4) {
948af674e45SBarry Smith               bap[jj] += *value++;
949af674e45SBarry Smith             }
950af674e45SBarry Smith           }
951af674e45SBarry Smith           goto noinsert2;
952af674e45SBarry Smith         }
953af674e45SBarry Smith       }
954af674e45SBarry Smith       N = nrow++ - 1;
95517ec6a02SBarry Smith       high++; /* added new column index thus must search to one higher than before */
956af674e45SBarry Smith       /* shift up all the later entries in this row */
957af674e45SBarry Smith       for (ii=N; ii>=i; ii--) {
958af674e45SBarry Smith         rp[ii+1] = rp[ii];
959a037b02bSBarry Smith         PetscMemcpy(ap+16*(ii+1),ap+16*(ii),16*sizeof(MatScalar));
960af674e45SBarry Smith       }
961af674e45SBarry Smith       if (N >= i) {
962a037b02bSBarry Smith         PetscMemzero(ap+16*i,16*sizeof(MatScalar));
963af674e45SBarry Smith       }
964af674e45SBarry Smith       rp[i] = col;
965af674e45SBarry Smith       bap   = ap +  16*i;
966af674e45SBarry Smith       for (ii=0; ii<4; ii++,value+=stepval) {
967af674e45SBarry Smith         for (jj=ii; jj<16; jj+=4) {
968af674e45SBarry Smith           bap[jj] = *value++;
969af674e45SBarry Smith         }
970af674e45SBarry Smith       }
971af674e45SBarry Smith       noinsert2:;
972af674e45SBarry Smith       low = i;
973af674e45SBarry Smith     }
974af674e45SBarry Smith     ailen[row] = nrow;
975af674e45SBarry Smith   }
976be1d678aSKris Buschelman   PetscFunctionReturnVoid();
977af674e45SBarry Smith }
978af674e45SBarry Smith 
979af674e45SBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS)
980af674e45SBarry Smith #define matsetvalues4_ MATSETVALUES4
981af674e45SBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
982af674e45SBarry Smith #define matsetvalues4_ matsetvalues4
983af674e45SBarry Smith #endif
984af674e45SBarry Smith 
985af674e45SBarry Smith #undef __FUNCT__
986af674e45SBarry Smith #define __FUNCT__ "MatSetValues4_"
9878cc058d9SJed Brown PETSC_EXTERN void matsetvalues4_(Mat *AA,PetscInt *mm,PetscInt *im,PetscInt *nn,PetscInt *in,PetscScalar *v)
988af674e45SBarry Smith {
989af674e45SBarry Smith   Mat         A  = *AA;
990af674e45SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data;
991c1ac3661SBarry Smith   PetscInt    *rp,k,low,high,t,ii,row,nrow,i,col,l,N,n = *nn,m = *mm;
992c1ac3661SBarry Smith   PetscInt    *ai=a->i,*ailen=a->ilen;
993c1ac3661SBarry Smith   PetscInt    *aj=a->j,brow,bcol;
99417ec6a02SBarry Smith   PetscInt    ridx,cidx,lastcol = -1;
995af674e45SBarry Smith   MatScalar   *ap,value,*aa=a->a,*bap;
996af674e45SBarry Smith 
997af674e45SBarry Smith   PetscFunctionBegin;
998af674e45SBarry Smith   for (k=0; k<m; k++) { /* loop over added rows */
999af674e45SBarry Smith     row  = im[k]; brow = row/4;
1000af674e45SBarry Smith     rp   = aj + ai[brow];
1001af674e45SBarry Smith     ap   = aa + 16*ai[brow];
1002af674e45SBarry Smith     nrow = ailen[brow];
1003af674e45SBarry Smith     low  = 0;
100417ec6a02SBarry Smith     high = nrow;
1005af674e45SBarry Smith     for (l=0; l<n; l++) { /* loop over added columns */
1006af674e45SBarry Smith       col   = in[l]; bcol = col/4;
1007af674e45SBarry Smith       ridx  = row % 4; cidx = col % 4;
1008af674e45SBarry Smith       value = v[l + k*n];
1009db4deed7SKarl Rupp       if (col <= lastcol)  low = 0;
1010db4deed7SKarl Rupp       else                high = nrow;
101117ec6a02SBarry Smith       lastcol = col;
1012af674e45SBarry Smith       while (high-low > 7) {
1013af674e45SBarry Smith         t = (low+high)/2;
1014af674e45SBarry Smith         if (rp[t] > bcol) high = t;
1015af674e45SBarry Smith         else              low  = t;
1016af674e45SBarry Smith       }
1017af674e45SBarry Smith       for (i=low; i<high; i++) {
1018af674e45SBarry Smith         if (rp[i] > bcol) break;
1019af674e45SBarry Smith         if (rp[i] == bcol) {
1020af674e45SBarry Smith           bap   = ap +  16*i + 4*cidx + ridx;
1021af674e45SBarry Smith           *bap += value;
1022af674e45SBarry Smith           goto noinsert1;
1023af674e45SBarry Smith         }
1024af674e45SBarry Smith       }
1025af674e45SBarry Smith       N = nrow++ - 1;
102617ec6a02SBarry Smith       high++; /* added new column thus must search to one higher than before */
1027af674e45SBarry Smith       /* shift up all the later entries in this row */
1028af674e45SBarry Smith       for (ii=N; ii>=i; ii--) {
1029af674e45SBarry Smith         rp[ii+1] = rp[ii];
1030a037b02bSBarry Smith         PetscMemcpy(ap+16*(ii+1),ap+16*(ii),16*sizeof(MatScalar));
1031af674e45SBarry Smith       }
1032af674e45SBarry Smith       if (N>=i) {
1033a037b02bSBarry Smith         PetscMemzero(ap+16*i,16*sizeof(MatScalar));
1034af674e45SBarry Smith       }
1035af674e45SBarry Smith       rp[i]                    = bcol;
1036af674e45SBarry Smith       ap[16*i + 4*cidx + ridx] = value;
1037af674e45SBarry Smith noinsert1:;
1038af674e45SBarry Smith       low = i;
1039af674e45SBarry Smith     }
1040af674e45SBarry Smith     ailen[brow] = nrow;
1041af674e45SBarry Smith   }
1042be1d678aSKris Buschelman   PetscFunctionReturnVoid();
1043af674e45SBarry Smith }
1044af674e45SBarry Smith 
1045be5855fcSBarry Smith /*
1046be5855fcSBarry Smith      Checks for missing diagonals
1047be5855fcSBarry Smith */
10484a2ae208SSatish Balay #undef __FUNCT__
10494a2ae208SSatish Balay #define __FUNCT__ "MatMissingDiagonal_SeqBAIJ"
1050ace3abfcSBarry Smith PetscErrorCode MatMissingDiagonal_SeqBAIJ(Mat A,PetscBool  *missing,PetscInt *d)
1051be5855fcSBarry Smith {
1052be5855fcSBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
10536849ba73SBarry Smith   PetscErrorCode ierr;
10547734d3b5SMatthew G. Knepley   PetscInt       *diag,*ii = a->i,i;
1055be5855fcSBarry Smith 
1056be5855fcSBarry Smith   PetscFunctionBegin;
1057c4992f7dSBarry Smith   ierr     = MatMarkDiagonal_SeqBAIJ(A);CHKERRQ(ierr);
10582af78befSBarry Smith   *missing = PETSC_FALSE;
10597734d3b5SMatthew G. Knepley   if (A->rmap->n > 0 && !ii) {
10602efa7f71SHong Zhang     *missing = PETSC_TRUE;
10612efa7f71SHong Zhang     if (d) *d = 0;
1062955c1f14SBarry Smith     PetscInfo(A,"Matrix has no entries therefore is missing diagonal\n");
10632efa7f71SHong Zhang   } else {
1064883fce79SBarry Smith     diag = a->diag;
10650e8e8aceSBarry Smith     for (i=0; i<a->mbs; i++) {
10667734d3b5SMatthew G. Knepley       if (diag[i] >= ii[i+1]) {
10672af78befSBarry Smith         *missing = PETSC_TRUE;
10682af78befSBarry Smith         if (d) *d = i;
1069955c1f14SBarry Smith         PetscInfo1(A,"Matrix is missing block diagonal number %D\n",i);
1070358d2f5dSShri Abhyankar         break;
10712efa7f71SHong Zhang       }
1072be5855fcSBarry Smith     }
1073be5855fcSBarry Smith   }
1074be5855fcSBarry Smith   PetscFunctionReturn(0);
1075be5855fcSBarry Smith }
1076be5855fcSBarry Smith 
10774a2ae208SSatish Balay #undef __FUNCT__
10784a2ae208SSatish Balay #define __FUNCT__ "MatMarkDiagonal_SeqBAIJ"
1079dfbe8321SBarry Smith PetscErrorCode MatMarkDiagonal_SeqBAIJ(Mat A)
1080de6a44a3SBarry Smith {
1081de6a44a3SBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
10826849ba73SBarry Smith   PetscErrorCode ierr;
108309f38230SBarry Smith   PetscInt       i,j,m = a->mbs;
1084de6a44a3SBarry Smith 
10853a40ed3dSBarry Smith   PetscFunctionBegin;
108609f38230SBarry Smith   if (!a->diag) {
1087785e854fSJed Brown     ierr         = PetscMalloc1(m,&a->diag);CHKERRQ(ierr);
10883bb1ff40SBarry Smith     ierr         = PetscLogObjectMemory((PetscObject)A,m*sizeof(PetscInt));CHKERRQ(ierr);
10894fd072dbSBarry Smith     a->free_diag = PETSC_TRUE;
109009f38230SBarry Smith   }
10917fc0212eSBarry Smith   for (i=0; i<m; i++) {
109209f38230SBarry Smith     a->diag[i] = a->i[i+1];
1093de6a44a3SBarry Smith     for (j=a->i[i]; j<a->i[i+1]; j++) {
1094de6a44a3SBarry Smith       if (a->j[j] == i) {
109509f38230SBarry Smith         a->diag[i] = j;
1096de6a44a3SBarry Smith         break;
1097de6a44a3SBarry Smith       }
1098de6a44a3SBarry Smith     }
1099de6a44a3SBarry Smith   }
11003a40ed3dSBarry Smith   PetscFunctionReturn(0);
1101de6a44a3SBarry Smith }
11022593348eSBarry Smith 
11032593348eSBarry Smith 
11044a2ae208SSatish Balay #undef __FUNCT__
11054a2ae208SSatish Balay #define __FUNCT__ "MatGetRowIJ_SeqBAIJ"
11061a83f524SJed Brown static PetscErrorCode MatGetRowIJ_SeqBAIJ(Mat A,PetscInt oshift,PetscBool symmetric,PetscBool blockcompressed,PetscInt *nn,const PetscInt *inia[],const PetscInt *inja[],PetscBool  *done)
11073b2fbd54SBarry Smith {
11083b2fbd54SBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
1109dfbe8321SBarry Smith   PetscErrorCode ierr;
11101a83f524SJed Brown   PetscInt       i,j,n = a->mbs,nz = a->i[n],*tia,*tja,bs = A->rmap->bs,k,l,cnt;
11111a83f524SJed Brown   PetscInt       **ia = (PetscInt**)inia,**ja = (PetscInt**)inja;
11123b2fbd54SBarry Smith 
11133a40ed3dSBarry Smith   PetscFunctionBegin;
11143b2fbd54SBarry Smith   *nn = n;
11153a40ed3dSBarry Smith   if (!ia) PetscFunctionReturn(0);
11163b2fbd54SBarry Smith   if (symmetric) {
11178f7157efSSatish Balay     ierr = MatToSymmetricIJ_SeqAIJ(n,a->i,a->j,0,0,&tia,&tja);CHKERRQ(ierr);
1118553b3c51SBarry Smith     nz   = tia[n];
11193b2fbd54SBarry Smith   } else {
11208f7157efSSatish Balay     tia = a->i; tja = a->j;
11213b2fbd54SBarry Smith   }
11223b2fbd54SBarry Smith 
1123ecc77c7aSBarry Smith   if (!blockcompressed && bs > 1) {
1124ecc77c7aSBarry Smith     (*nn) *= bs;
11258f7157efSSatish Balay     /* malloc & create the natural set of indices */
1126785e854fSJed Brown     ierr = PetscMalloc1((n+1)*bs,ia);CHKERRQ(ierr);
11279985e31cSBarry Smith     if (n) {
1128ecc77c7aSBarry Smith       (*ia)[0] = 0;
1129ecc77c7aSBarry Smith       for (j=1; j<bs; j++) {
1130ecc77c7aSBarry Smith         (*ia)[j] = (tia[1]-tia[0])*bs+(*ia)[j-1];
1131ecc77c7aSBarry Smith       }
11329985e31cSBarry Smith     }
1133ecc77c7aSBarry Smith 
1134ecc77c7aSBarry Smith     for (i=1; i<n; i++) {
1135ecc77c7aSBarry Smith       (*ia)[i*bs] = (tia[i]-tia[i-1])*bs + (*ia)[i*bs-1];
1136ecc77c7aSBarry Smith       for (j=1; j<bs; j++) {
1137ecc77c7aSBarry Smith         (*ia)[i*bs+j] = (tia[i+1]-tia[i])*bs + (*ia)[i*bs+j-1];
11388f7157efSSatish Balay       }
11398f7157efSSatish Balay     }
11409985e31cSBarry Smith     if (n) {
1141ecc77c7aSBarry Smith       (*ia)[n*bs] = (tia[n]-tia[n-1])*bs + (*ia)[n*bs-1];
11429985e31cSBarry Smith     }
1143ecc77c7aSBarry Smith 
11441a83f524SJed Brown     if (inja) {
1145785e854fSJed Brown       ierr = PetscMalloc1(nz*bs*bs,ja);CHKERRQ(ierr);
11469985e31cSBarry Smith       cnt = 0;
11479985e31cSBarry Smith       for (i=0; i<n; i++) {
11489985e31cSBarry Smith         for (j=0; j<bs; j++) {
11499985e31cSBarry Smith           for (k=tia[i]; k<tia[i+1]; k++) {
11509985e31cSBarry Smith             for (l=0; l<bs; l++) {
11519985e31cSBarry Smith               (*ja)[cnt++] = bs*tja[k] + l;
11529985e31cSBarry Smith             }
11539985e31cSBarry Smith           }
11549985e31cSBarry Smith         }
11559985e31cSBarry Smith       }
11569985e31cSBarry Smith     }
11579985e31cSBarry Smith 
11588f7157efSSatish Balay     if (symmetric) { /* deallocate memory allocated in MatToSymmetricIJ_SeqAIJ() */
11598f7157efSSatish Balay       ierr = PetscFree(tia);CHKERRQ(ierr);
11608f7157efSSatish Balay       ierr = PetscFree(tja);CHKERRQ(ierr);
11618f7157efSSatish Balay     }
1162f6d58c54SBarry Smith   } else if (oshift == 1) {
1163715a17b5SBarry Smith     if (symmetric) {
1164a2ea699eSBarry Smith       nz = tia[A->rmap->n/bs];
1165715a17b5SBarry Smith       /*  add 1 to i and j indices */
1166715a17b5SBarry Smith       for (i=0; i<A->rmap->n/bs+1; i++) tia[i] = tia[i] + 1;
1167715a17b5SBarry Smith       *ia = tia;
1168715a17b5SBarry Smith       if (ja) {
1169715a17b5SBarry Smith         for (i=0; i<nz; i++) tja[i] = tja[i] + 1;
1170715a17b5SBarry Smith         *ja = tja;
1171715a17b5SBarry Smith       }
1172715a17b5SBarry Smith     } else {
1173a2ea699eSBarry Smith       nz = a->i[A->rmap->n/bs];
1174f6d58c54SBarry Smith       /* malloc space and  add 1 to i and j indices */
1175854ce69bSBarry Smith       ierr = PetscMalloc1(A->rmap->n/bs+1,ia);CHKERRQ(ierr);
1176f6d58c54SBarry Smith       for (i=0; i<A->rmap->n/bs+1; i++) (*ia)[i] = a->i[i] + 1;
1177f6d58c54SBarry Smith       if (ja) {
1178785e854fSJed Brown         ierr = PetscMalloc1(nz,ja);CHKERRQ(ierr);
1179f6d58c54SBarry Smith         for (i=0; i<nz; i++) (*ja)[i] = a->j[i] + 1;
1180f6d58c54SBarry Smith       }
1181715a17b5SBarry Smith     }
11828f7157efSSatish Balay   } else {
11838f7157efSSatish Balay     *ia = tia;
1184ecc77c7aSBarry Smith     if (ja) *ja = tja;
11858f7157efSSatish Balay   }
11863a40ed3dSBarry Smith   PetscFunctionReturn(0);
11873b2fbd54SBarry Smith }
11883b2fbd54SBarry Smith 
11894a2ae208SSatish Balay #undef __FUNCT__
11904a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRowIJ_SeqBAIJ"
11911a83f524SJed Brown static PetscErrorCode MatRestoreRowIJ_SeqBAIJ(Mat A,PetscInt oshift,PetscBool symmetric,PetscBool blockcompressed,PetscInt *nn,const PetscInt *ia[],const PetscInt *ja[],PetscBool  *done)
11923b2fbd54SBarry Smith {
11936849ba73SBarry Smith   PetscErrorCode ierr;
11943b2fbd54SBarry Smith 
11953a40ed3dSBarry Smith   PetscFunctionBegin;
11963a40ed3dSBarry Smith   if (!ia) PetscFunctionReturn(0);
1197715a17b5SBarry Smith   if ((!blockcompressed && A->rmap->bs > 1) || (symmetric || oshift == 1)) {
1198606d414cSSatish Balay     ierr = PetscFree(*ia);CHKERRQ(ierr);
11999985e31cSBarry Smith     if (ja) {ierr = PetscFree(*ja);CHKERRQ(ierr);}
12003b2fbd54SBarry Smith   }
12013a40ed3dSBarry Smith   PetscFunctionReturn(0);
12023b2fbd54SBarry Smith }
12033b2fbd54SBarry Smith 
12044a2ae208SSatish Balay #undef __FUNCT__
12054a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_SeqBAIJ"
1206dfbe8321SBarry Smith PetscErrorCode MatDestroy_SeqBAIJ(Mat A)
12072d61bbb3SSatish Balay {
12082d61bbb3SSatish Balay   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
1209dfbe8321SBarry Smith   PetscErrorCode ierr;
12102d61bbb3SSatish Balay 
1211433994e6SBarry Smith   PetscFunctionBegin;
1212aa482453SBarry Smith #if defined(PETSC_USE_LOG)
1213d0f46423SBarry Smith   PetscLogObjectState((PetscObject)A,"Rows=%D, Cols=%D, NZ=%D",A->rmap->N,A->cmap->n,a->nz);
12142d61bbb3SSatish Balay #endif
1215e6b907acSBarry Smith   ierr = MatSeqXAIJFreeAIJ(A,&a->a,&a->j,&a->i);CHKERRQ(ierr);
12166bf464f9SBarry Smith   ierr = ISDestroy(&a->row);CHKERRQ(ierr);
12176bf464f9SBarry Smith   ierr = ISDestroy(&a->col);CHKERRQ(ierr);
12184fd072dbSBarry Smith   if (a->free_diag) {ierr = PetscFree(a->diag);CHKERRQ(ierr);}
121905b42c5fSBarry Smith   ierr = PetscFree(a->idiag);CHKERRQ(ierr);
12204fd072dbSBarry Smith   if (a->free_imax_ilen) {ierr = PetscFree2(a->imax,a->ilen);CHKERRQ(ierr);}
122105b42c5fSBarry Smith   ierr = PetscFree(a->solve_work);CHKERRQ(ierr);
122205b42c5fSBarry Smith   ierr = PetscFree(a->mult_work);CHKERRQ(ierr);
1223f361c04dSBarry Smith   ierr = PetscFree(a->sor_workt);CHKERRQ(ierr);
1224de80f912SBarry Smith   ierr = PetscFree(a->sor_work);CHKERRQ(ierr);
12256bf464f9SBarry Smith   ierr = ISDestroy(&a->icol);CHKERRQ(ierr);
122605b42c5fSBarry Smith   ierr = PetscFree(a->saved_values);CHKERRQ(ierr);
1227cd6b891eSBarry Smith   ierr = PetscFree2(a->compressedrow.i,a->compressedrow.rindex);CHKERRQ(ierr);
1228c4319e64SHong Zhang 
12296bf464f9SBarry Smith   ierr = MatDestroy(&a->sbaijMat);CHKERRQ(ierr);
12306bf464f9SBarry Smith   ierr = MatDestroy(&a->parent);CHKERRQ(ierr);
1231bf0cc555SLisandro Dalcin   ierr = PetscFree(A->data);CHKERRQ(ierr);
1232901853e0SKris Buschelman 
1233dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)A,0);CHKERRQ(ierr);
1234bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)A,"MatInvertBlockDiagonal_C",NULL);CHKERRQ(ierr);
1235bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)A,"MatStoreValues_C",NULL);CHKERRQ(ierr);
1236bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)A,"MatRetrieveValues_C",NULL);CHKERRQ(ierr);
1237bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqBAIJSetColumnIndices_C",NULL);CHKERRQ(ierr);
1238bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqbaij_seqaij_C",NULL);CHKERRQ(ierr);
1239bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqbaij_seqsbaij_C",NULL);CHKERRQ(ierr);
1240bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqBAIJSetPreallocation_C",NULL);CHKERRQ(ierr);
1241bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqBAIJSetPreallocationCSR_C",NULL);CHKERRQ(ierr);
1242bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqbaij_seqbstrm_C",NULL);CHKERRQ(ierr);
1243bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)A,"MatIsTranspose_C",NULL);CHKERRQ(ierr);
12442d61bbb3SSatish Balay   PetscFunctionReturn(0);
12452d61bbb3SSatish Balay }
12462d61bbb3SSatish Balay 
12474a2ae208SSatish Balay #undef __FUNCT__
12484a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_SeqBAIJ"
1249ace3abfcSBarry Smith PetscErrorCode MatSetOption_SeqBAIJ(Mat A,MatOption op,PetscBool flg)
12502d61bbb3SSatish Balay {
12512d61bbb3SSatish Balay   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
125263ba0a88SBarry Smith   PetscErrorCode ierr;
12532d61bbb3SSatish Balay 
12542d61bbb3SSatish Balay   PetscFunctionBegin;
1255aa275fccSKris Buschelman   switch (op) {
1256aa275fccSKris Buschelman   case MAT_ROW_ORIENTED:
12574e0d8c25SBarry Smith     a->roworiented = flg;
1258aa275fccSKris Buschelman     break;
1259a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1260a9817697SBarry Smith     a->keepnonzeropattern = flg;
1261aa275fccSKris Buschelman     break;
1262512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1263512a5fc5SBarry Smith     a->nonew = (flg ? 0 : 1);
1264aa275fccSKris Buschelman     break;
1265aa275fccSKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
12664e0d8c25SBarry Smith     a->nonew = (flg ? -1 : 0);
1267aa275fccSKris Buschelman     break;
1268aa275fccSKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
12694e0d8c25SBarry Smith     a->nonew = (flg ? -2 : 0);
1270aa275fccSKris Buschelman     break;
127128b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
127228b2fa4aSMatthew Knepley     a->nounused = (flg ? -1 : 0);
127328b2fa4aSMatthew Knepley     break;
12744e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1275aa275fccSKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
1276aa275fccSKris Buschelman   case MAT_USE_HASH_TABLE:
1277290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
1278aa275fccSKris Buschelman     break;
12795021d80fSJed Brown   case MAT_SPD:
128077e54ba9SKris Buschelman   case MAT_SYMMETRIC:
128177e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
12829a4540c5SBarry Smith   case MAT_HERMITIAN:
12839a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
12845021d80fSJed Brown     /* These options are handled directly by MatSetOption() */
128577e54ba9SKris Buschelman     break;
1286aa275fccSKris Buschelman   default:
1287e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op);
12882d61bbb3SSatish Balay   }
12892d61bbb3SSatish Balay   PetscFunctionReturn(0);
12902d61bbb3SSatish Balay }
12912d61bbb3SSatish Balay 
129252768537SHong Zhang /* used for both SeqBAIJ and SeqSBAIJ matrices */
12934a2ae208SSatish Balay #undef __FUNCT__
129452768537SHong Zhang #define __FUNCT__ "MatGetRow_SeqBAIJ_private"
129552768537SHong Zhang PetscErrorCode MatGetRow_SeqBAIJ_private(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v,PetscInt *ai,PetscInt *aj,PetscScalar *aa)
12962d61bbb3SSatish Balay {
12976849ba73SBarry Smith   PetscErrorCode ierr;
129852768537SHong Zhang   PetscInt       itmp,i,j,k,M,bn,bp,*idx_i,bs,bs2;
129952768537SHong Zhang   MatScalar      *aa_i;
130087828ca2SBarry Smith   PetscScalar    *v_i;
13012d61bbb3SSatish Balay 
13022d61bbb3SSatish Balay   PetscFunctionBegin;
1303d0f46423SBarry Smith   bs  = A->rmap->bs;
130452768537SHong Zhang   bs2 = bs*bs;
1305e32f2f54SBarry Smith   if (row < 0 || row >= A->rmap->N) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %D out of range", row);
13062d61bbb3SSatish Balay 
13072d61bbb3SSatish Balay   bn  = row/bs;   /* Block number */
13082d61bbb3SSatish Balay   bp  = row % bs; /* Block Position */
13092d61bbb3SSatish Balay   M   = ai[bn+1] - ai[bn];
13102d61bbb3SSatish Balay   *nz = bs*M;
13112d61bbb3SSatish Balay 
13122d61bbb3SSatish Balay   if (v) {
13132d61bbb3SSatish Balay     *v = 0;
13142d61bbb3SSatish Balay     if (*nz) {
1315854ce69bSBarry Smith       ierr = PetscMalloc1(*nz,v);CHKERRQ(ierr);
13162d61bbb3SSatish Balay       for (i=0; i<M; i++) { /* for each block in the block row */
13172d61bbb3SSatish Balay         v_i  = *v + i*bs;
13182d61bbb3SSatish Balay         aa_i = aa + bs2*(ai[bn] + i);
131926fbe8dcSKarl Rupp         for (j=bp,k=0; j<bs2; j+=bs,k++) v_i[k] = aa_i[j];
13202d61bbb3SSatish Balay       }
13212d61bbb3SSatish Balay     }
13222d61bbb3SSatish Balay   }
13232d61bbb3SSatish Balay 
13242d61bbb3SSatish Balay   if (idx) {
13252d61bbb3SSatish Balay     *idx = 0;
13262d61bbb3SSatish Balay     if (*nz) {
1327854ce69bSBarry Smith       ierr = PetscMalloc1(*nz,idx);CHKERRQ(ierr);
13282d61bbb3SSatish Balay       for (i=0; i<M; i++) { /* for each block in the block row */
13292d61bbb3SSatish Balay         idx_i = *idx + i*bs;
13302d61bbb3SSatish Balay         itmp  = bs*aj[ai[bn] + i];
133126fbe8dcSKarl Rupp         for (j=0; j<bs; j++) idx_i[j] = itmp++;
13322d61bbb3SSatish Balay       }
13332d61bbb3SSatish Balay     }
13342d61bbb3SSatish Balay   }
13352d61bbb3SSatish Balay   PetscFunctionReturn(0);
13362d61bbb3SSatish Balay }
13372d61bbb3SSatish Balay 
13384a2ae208SSatish Balay #undef __FUNCT__
133952768537SHong Zhang #define __FUNCT__ "MatGetRow_SeqBAIJ"
134052768537SHong Zhang PetscErrorCode MatGetRow_SeqBAIJ(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
134152768537SHong Zhang {
134252768537SHong Zhang   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
134352768537SHong Zhang   PetscErrorCode ierr;
134452768537SHong Zhang 
134552768537SHong Zhang   PetscFunctionBegin;
134652768537SHong Zhang   ierr = MatGetRow_SeqBAIJ_private(A,row,nz,idx,v,a->i,a->j,a->a);CHKERRQ(ierr);
134752768537SHong Zhang   PetscFunctionReturn(0);
134852768537SHong Zhang }
134952768537SHong Zhang 
135052768537SHong Zhang #undef __FUNCT__
13514a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_SeqBAIJ"
1352c1ac3661SBarry Smith PetscErrorCode MatRestoreRow_SeqBAIJ(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
13532d61bbb3SSatish Balay {
1354dfbe8321SBarry Smith   PetscErrorCode ierr;
1355606d414cSSatish Balay 
13562d61bbb3SSatish Balay   PetscFunctionBegin;
135705b42c5fSBarry Smith   if (idx) {ierr = PetscFree(*idx);CHKERRQ(ierr);}
135805b42c5fSBarry Smith   if (v)   {ierr = PetscFree(*v);CHKERRQ(ierr);}
13592d61bbb3SSatish Balay   PetscFunctionReturn(0);
13602d61bbb3SSatish Balay }
13612d61bbb3SSatish Balay 
1362fca92195SBarry Smith extern PetscErrorCode MatSetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
1363fca92195SBarry Smith 
13644a2ae208SSatish Balay #undef __FUNCT__
13654a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_SeqBAIJ"
1366fc4dec0aSBarry Smith PetscErrorCode MatTranspose_SeqBAIJ(Mat A,MatReuse reuse,Mat *B)
13672d61bbb3SSatish Balay {
13682d61bbb3SSatish Balay   Mat_SeqBAIJ    *a=(Mat_SeqBAIJ*)A->data;
13692d61bbb3SSatish Balay   Mat            C;
13706849ba73SBarry Smith   PetscErrorCode ierr;
1371d0f46423SBarry Smith   PetscInt       i,j,k,*aj=a->j,*ai=a->i,bs=A->rmap->bs,mbs=a->mbs,nbs=a->nbs,len,*col;
1372c1ac3661SBarry Smith   PetscInt       *rows,*cols,bs2=a->bs2;
1373dd6ea824SBarry Smith   MatScalar      *array;
13742d61bbb3SSatish Balay 
13752d61bbb3SSatish Balay   PetscFunctionBegin;
1376e32f2f54SBarry Smith   if (reuse == MAT_REUSE_MATRIX && A == *B && mbs != nbs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Square matrix only for in-place");
1377fc4dec0aSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || A == *B) {
1378854ce69bSBarry Smith     ierr = PetscCalloc1(1+nbs,&col);CHKERRQ(ierr);
13792d61bbb3SSatish Balay 
13802d61bbb3SSatish Balay     for (i=0; i<ai[mbs]; i++) col[aj[i]] += 1;
1381ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)A),&C);CHKERRQ(ierr);
1382d0f46423SBarry Smith     ierr = MatSetSizes(C,A->cmap->n,A->rmap->N,A->cmap->n,A->rmap->N);CHKERRQ(ierr);
13837adad957SLisandro Dalcin     ierr = MatSetType(C,((PetscObject)A)->type_name);CHKERRQ(ierr);
1384ecd8bba6SJed Brown     ierr = MatSeqBAIJSetPreallocation_SeqBAIJ(C,bs,0,col);CHKERRQ(ierr);
1385606d414cSSatish Balay     ierr = PetscFree(col);CHKERRQ(ierr);
1386fc4dec0aSBarry Smith   } else {
1387fc4dec0aSBarry Smith     C = *B;
1388fc4dec0aSBarry Smith   }
1389fc4dec0aSBarry Smith 
1390fc4dec0aSBarry Smith   array = a->a;
1391dcca6d9dSJed Brown   ierr  = PetscMalloc2(bs,&rows,bs,&cols);CHKERRQ(ierr);
13922d61bbb3SSatish Balay   for (i=0; i<mbs; i++) {
13932d61bbb3SSatish Balay     cols[0] = i*bs;
13942d61bbb3SSatish Balay     for (k=1; k<bs; k++) cols[k] = cols[k-1] + 1;
13952d61bbb3SSatish Balay     len = ai[i+1] - ai[i];
13962d61bbb3SSatish Balay     for (j=0; j<len; j++) {
13972d61bbb3SSatish Balay       rows[0] = (*aj++)*bs;
13982d61bbb3SSatish Balay       for (k=1; k<bs; k++) rows[k] = rows[k-1] + 1;
1399fca92195SBarry Smith       ierr   = MatSetValues_SeqBAIJ(C,bs,rows,bs,cols,array,INSERT_VALUES);CHKERRQ(ierr);
14002d61bbb3SSatish Balay       array += bs2;
14012d61bbb3SSatish Balay     }
14022d61bbb3SSatish Balay   }
1403fca92195SBarry Smith   ierr = PetscFree2(rows,cols);CHKERRQ(ierr);
14042d61bbb3SSatish Balay 
14052d61bbb3SSatish Balay   ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
14062d61bbb3SSatish Balay   ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
14072d61bbb3SSatish Balay 
1408815cbec1SBarry Smith   if (reuse == MAT_INITIAL_MATRIX || *B != A) {
14092d61bbb3SSatish Balay     *B = C;
14102d61bbb3SSatish Balay   } else {
141128be2f97SBarry Smith     ierr = MatHeaderMerge(A,&C);CHKERRQ(ierr);
14122d61bbb3SSatish Balay   }
14132d61bbb3SSatish Balay   PetscFunctionReturn(0);
14142d61bbb3SSatish Balay }
14152d61bbb3SSatish Balay 
1416453d3561SHong Zhang #undef __FUNCT__
1417453d3561SHong Zhang #define __FUNCT__ "MatIsTranspose_SeqBAIJ"
1418453d3561SHong Zhang PetscErrorCode MatIsTranspose_SeqBAIJ(Mat A,Mat B,PetscReal tol,PetscBool  *f)
1419453d3561SHong Zhang {
1420453d3561SHong Zhang   PetscErrorCode ierr;
1421453d3561SHong Zhang   Mat            Btrans;
1422453d3561SHong Zhang 
1423453d3561SHong Zhang   PetscFunctionBegin;
1424453d3561SHong Zhang   *f   = PETSC_FALSE;
1425453d3561SHong Zhang   ierr = MatTranspose_SeqBAIJ(A,MAT_INITIAL_MATRIX,&Btrans);CHKERRQ(ierr);
1426453d3561SHong Zhang   ierr = MatEqual_SeqBAIJ(B,Btrans,f);CHKERRQ(ierr);
1427453d3561SHong Zhang   ierr = MatDestroy(&Btrans);CHKERRQ(ierr);
1428453d3561SHong Zhang   PetscFunctionReturn(0);
1429453d3561SHong Zhang }
1430453d3561SHong Zhang 
14314a2ae208SSatish Balay #undef __FUNCT__
14324a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqBAIJ_Binary"
14336849ba73SBarry Smith static PetscErrorCode MatView_SeqBAIJ_Binary(Mat A,PetscViewer viewer)
14342593348eSBarry Smith {
1435b6490206SBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
14366849ba73SBarry Smith   PetscErrorCode ierr;
1437d0f46423SBarry Smith   PetscInt       i,*col_lens,bs = A->rmap->bs,count,*jj,j,k,l,bs2=a->bs2;
1438b24ad042SBarry Smith   int            fd;
143987828ca2SBarry Smith   PetscScalar    *aa;
1440ce6f0cecSBarry Smith   FILE           *file;
14412593348eSBarry Smith 
14423a40ed3dSBarry Smith   PetscFunctionBegin;
1443b0a32e0cSBarry Smith   ierr        = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
1444854ce69bSBarry Smith   ierr        = PetscMalloc1(4+A->rmap->N,&col_lens);CHKERRQ(ierr);
14450700a824SBarry Smith   col_lens[0] = MAT_FILE_CLASSID;
14463b2fbd54SBarry Smith 
1447d0f46423SBarry Smith   col_lens[1] = A->rmap->N;
1448d0f46423SBarry Smith   col_lens[2] = A->cmap->n;
14497e67e3f9SSatish Balay   col_lens[3] = a->nz*bs2;
14502593348eSBarry Smith 
14512593348eSBarry Smith   /* store lengths of each row and write (including header) to file */
1452b6490206SBarry Smith   count = 0;
1453b6490206SBarry Smith   for (i=0; i<a->mbs; i++) {
1454b6490206SBarry Smith     for (j=0; j<bs; j++) {
1455b6490206SBarry Smith       col_lens[4+count++] = bs*(a->i[i+1] - a->i[i]);
1456b6490206SBarry Smith     }
14572593348eSBarry Smith   }
1458d0f46423SBarry Smith   ierr = PetscBinaryWrite(fd,col_lens,4+A->rmap->N,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1459606d414cSSatish Balay   ierr = PetscFree(col_lens);CHKERRQ(ierr);
14602593348eSBarry Smith 
14612593348eSBarry Smith   /* store column indices (zero start index) */
1462785e854fSJed Brown   ierr  = PetscMalloc1((a->nz+1)*bs2,&jj);CHKERRQ(ierr);
1463b6490206SBarry Smith   count = 0;
1464b6490206SBarry Smith   for (i=0; i<a->mbs; i++) {
1465b6490206SBarry Smith     for (j=0; j<bs; j++) {
1466b6490206SBarry Smith       for (k=a->i[i]; k<a->i[i+1]; k++) {
1467b6490206SBarry Smith         for (l=0; l<bs; l++) {
1468b6490206SBarry Smith           jj[count++] = bs*a->j[k] + l;
14692593348eSBarry Smith         }
14702593348eSBarry Smith       }
1471b6490206SBarry Smith     }
1472b6490206SBarry Smith   }
14736f69ff64SBarry Smith   ierr = PetscBinaryWrite(fd,jj,bs2*a->nz,PETSC_INT,PETSC_FALSE);CHKERRQ(ierr);
1474606d414cSSatish Balay   ierr = PetscFree(jj);CHKERRQ(ierr);
14752593348eSBarry Smith 
14762593348eSBarry Smith   /* store nonzero values */
1477785e854fSJed Brown   ierr  = PetscMalloc1((a->nz+1)*bs2,&aa);CHKERRQ(ierr);
1478b6490206SBarry Smith   count = 0;
1479b6490206SBarry Smith   for (i=0; i<a->mbs; i++) {
1480b6490206SBarry Smith     for (j=0; j<bs; j++) {
1481b6490206SBarry Smith       for (k=a->i[i]; k<a->i[i+1]; k++) {
1482b6490206SBarry Smith         for (l=0; l<bs; l++) {
14837e67e3f9SSatish Balay           aa[count++] = a->a[bs2*k + l*bs + j];
1484b6490206SBarry Smith         }
1485b6490206SBarry Smith       }
1486b6490206SBarry Smith     }
1487b6490206SBarry Smith   }
14886f69ff64SBarry Smith   ierr = PetscBinaryWrite(fd,aa,bs2*a->nz,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr);
1489606d414cSSatish Balay   ierr = PetscFree(aa);CHKERRQ(ierr);
1490ce6f0cecSBarry Smith 
1491b0a32e0cSBarry Smith   ierr = PetscViewerBinaryGetInfoPointer(viewer,&file);CHKERRQ(ierr);
1492ce6f0cecSBarry Smith   if (file) {
1493d0f46423SBarry Smith     fprintf(file,"-matload_block_size %d\n",(int)A->rmap->bs);
1494ce6f0cecSBarry Smith   }
14953a40ed3dSBarry Smith   PetscFunctionReturn(0);
14962593348eSBarry Smith }
14972593348eSBarry Smith 
14984a2ae208SSatish Balay #undef __FUNCT__
14994a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqBAIJ_ASCII"
15006849ba73SBarry Smith static PetscErrorCode MatView_SeqBAIJ_ASCII(Mat A,PetscViewer viewer)
15012593348eSBarry Smith {
1502b6490206SBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
1503dfbe8321SBarry Smith   PetscErrorCode    ierr;
1504d0f46423SBarry Smith   PetscInt          i,j,bs = A->rmap->bs,k,l,bs2=a->bs2;
1505f3ef73ceSBarry Smith   PetscViewerFormat format;
15062593348eSBarry Smith 
15073a40ed3dSBarry Smith   PetscFunctionBegin;
1508b0a32e0cSBarry Smith   ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
1509456192e2SBarry Smith   if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
151077431f27SBarry Smith     ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
1511fb9695e5SSatish Balay   } else if (format == PETSC_VIEWER_ASCII_MATLAB) {
1512ade3a672SBarry Smith     const char *matname;
1513bcd9e38bSBarry Smith     Mat        aij;
1514ceb03754SKris Buschelman     ierr = MatConvert(A,MATSEQAIJ,MAT_INITIAL_MATRIX,&aij);CHKERRQ(ierr);
1515ade3a672SBarry Smith     ierr = PetscObjectGetName((PetscObject)A,&matname);CHKERRQ(ierr);
1516ade3a672SBarry Smith     ierr = PetscObjectSetName((PetscObject)aij,matname);CHKERRQ(ierr);
1517bcd9e38bSBarry Smith     ierr = MatView(aij,viewer);CHKERRQ(ierr);
15186bf464f9SBarry Smith     ierr = MatDestroy(&aij);CHKERRQ(ierr);
151904929863SHong Zhang   } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
152004929863SHong Zhang       PetscFunctionReturn(0);
1521fb9695e5SSatish Balay   } else if (format == PETSC_VIEWER_ASCII_COMMON) {
1522d00279f6SBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr);
152344cd7ae7SLois Curfman McInnes     for (i=0; i<a->mbs; i++) {
152444cd7ae7SLois Curfman McInnes       for (j=0; j<bs; j++) {
152577431f27SBarry Smith         ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i*bs+j);CHKERRQ(ierr);
152644cd7ae7SLois Curfman McInnes         for (k=a->i[i]; k<a->i[i+1]; k++) {
152744cd7ae7SLois Curfman McInnes           for (l=0; l<bs; l++) {
1528aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
15290e6d2581SBarry Smith             if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) > 0.0 && PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) {
153057622a8eSBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %gi) ",bs*a->j[k]+l,
153157622a8eSBarry Smith                                             (double)PetscRealPart(a->a[bs2*k + l*bs + j]),(double)PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
15320e6d2581SBarry Smith             } else if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) < 0.0 && PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) {
153357622a8eSBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %gi) ",bs*a->j[k]+l,
153457622a8eSBarry Smith                                             (double)PetscRealPart(a->a[bs2*k + l*bs + j]),-(double)PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
15350e6d2581SBarry Smith             } else if (PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) {
153657622a8eSBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",bs*a->j[k]+l,(double)PetscRealPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
15370ef38995SBarry Smith             }
153844cd7ae7SLois Curfman McInnes #else
15390ef38995SBarry Smith             if (a->a[bs2*k + l*bs + j] != 0.0) {
154057622a8eSBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",bs*a->j[k]+l,(double)a->a[bs2*k + l*bs + j]);CHKERRQ(ierr);
15410ef38995SBarry Smith             }
154244cd7ae7SLois Curfman McInnes #endif
154344cd7ae7SLois Curfman McInnes           }
154444cd7ae7SLois Curfman McInnes         }
1545b0a32e0cSBarry Smith         ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
154644cd7ae7SLois Curfman McInnes       }
154744cd7ae7SLois Curfman McInnes     }
1548d00279f6SBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr);
15490ef38995SBarry Smith   } else {
1550d00279f6SBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr);
1551b6490206SBarry Smith     for (i=0; i<a->mbs; i++) {
1552b6490206SBarry Smith       for (j=0; j<bs; j++) {
155377431f27SBarry Smith         ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i*bs+j);CHKERRQ(ierr);
1554b6490206SBarry Smith         for (k=a->i[i]; k<a->i[i+1]; k++) {
1555b6490206SBarry Smith           for (l=0; l<bs; l++) {
1556aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
15570e6d2581SBarry Smith             if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) > 0.0) {
155857622a8eSBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %g + %g i) ",bs*a->j[k]+l,
155957622a8eSBarry Smith                                             (double)PetscRealPart(a->a[bs2*k + l*bs + j]),(double)PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
15600e6d2581SBarry Smith             } else if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) < 0.0) {
156157622a8eSBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %g - %g i) ",bs*a->j[k]+l,
156257622a8eSBarry Smith                                             (double)PetscRealPart(a->a[bs2*k + l*bs + j]),-(double)PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
15630ef38995SBarry Smith             } else {
156457622a8eSBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",bs*a->j[k]+l,(double)PetscRealPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
156588685aaeSLois Curfman McInnes             }
156688685aaeSLois Curfman McInnes #else
156757622a8eSBarry Smith             ierr = PetscViewerASCIIPrintf(viewer," (%D, %g) ",bs*a->j[k]+l,(double)a->a[bs2*k + l*bs + j]);CHKERRQ(ierr);
156888685aaeSLois Curfman McInnes #endif
15692593348eSBarry Smith           }
15702593348eSBarry Smith         }
1571b0a32e0cSBarry Smith         ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
15722593348eSBarry Smith       }
15732593348eSBarry Smith     }
1574d00279f6SBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr);
1575b6490206SBarry Smith   }
1576b0a32e0cSBarry Smith   ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
15773a40ed3dSBarry Smith   PetscFunctionReturn(0);
15782593348eSBarry Smith }
15792593348eSBarry Smith 
15809804daf3SBarry Smith #include <petscdraw.h>
15814a2ae208SSatish Balay #undef __FUNCT__
15824a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqBAIJ_Draw_Zoom"
15836849ba73SBarry Smith static PetscErrorCode MatView_SeqBAIJ_Draw_Zoom(PetscDraw draw,void *Aa)
15843270192aSSatish Balay {
158577ed5343SBarry Smith   Mat               A = (Mat) Aa;
15863270192aSSatish Balay   Mat_SeqBAIJ       *a=(Mat_SeqBAIJ*)A->data;
15876849ba73SBarry Smith   PetscErrorCode    ierr;
1588d0f46423SBarry Smith   PetscInt          row,i,j,k,l,mbs=a->mbs,color,bs=A->rmap->bs,bs2=a->bs2;
15890e6d2581SBarry Smith   PetscReal         xl,yl,xr,yr,x_l,x_r,y_l,y_r;
15903f1db9ecSBarry Smith   MatScalar         *aa;
1591b0a32e0cSBarry Smith   PetscViewer       viewer;
1592b3e7f47fSJed Brown   PetscViewerFormat format;
15933270192aSSatish Balay 
15943a40ed3dSBarry Smith   PetscFunctionBegin;
159577ed5343SBarry Smith   ierr = PetscObjectQuery((PetscObject)A,"Zoomviewer",(PetscObject*)&viewer);CHKERRQ(ierr);
1596b3e7f47fSJed Brown   ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
159777ed5343SBarry Smith 
1598b0a32e0cSBarry Smith   ierr = PetscDrawGetCoordinates(draw,&xl,&yl,&xr,&yr);CHKERRQ(ierr);
159977ed5343SBarry Smith 
16003270192aSSatish Balay   /* loop over matrix elements drawing boxes */
1601b3e7f47fSJed Brown 
1602b3e7f47fSJed Brown   if (format != PETSC_VIEWER_DRAW_CONTOUR) {
1603b0a32e0cSBarry Smith     color = PETSC_DRAW_BLUE;
16043270192aSSatish Balay     for (i=0,row=0; i<mbs; i++,row+=bs) {
16053270192aSSatish Balay       for (j=a->i[i]; j<a->i[i+1]; j++) {
1606d0f46423SBarry Smith         y_l = A->rmap->N - row - 1.0; y_r = y_l + 1.0;
16073270192aSSatish Balay         x_l = a->j[j]*bs; x_r = x_l + 1.0;
16083270192aSSatish Balay         aa  = a->a + j*bs2;
16093270192aSSatish Balay         for (k=0; k<bs; k++) {
16103270192aSSatish Balay           for (l=0; l<bs; l++) {
16110e6d2581SBarry Smith             if (PetscRealPart(*aa++) >=  0.) continue;
1612b0a32e0cSBarry Smith             ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr);
16133270192aSSatish Balay           }
16143270192aSSatish Balay         }
16153270192aSSatish Balay       }
16163270192aSSatish Balay     }
1617b0a32e0cSBarry Smith     color = PETSC_DRAW_CYAN;
16183270192aSSatish Balay     for (i=0,row=0; i<mbs; i++,row+=bs) {
16193270192aSSatish Balay       for (j=a->i[i]; j<a->i[i+1]; j++) {
1620d0f46423SBarry Smith         y_l = A->rmap->N - row - 1.0; y_r = y_l + 1.0;
16213270192aSSatish Balay         x_l = a->j[j]*bs; x_r = x_l + 1.0;
16223270192aSSatish Balay         aa  = a->a + j*bs2;
16233270192aSSatish Balay         for (k=0; k<bs; k++) {
16243270192aSSatish Balay           for (l=0; l<bs; l++) {
16250e6d2581SBarry Smith             if (PetscRealPart(*aa++) != 0.) continue;
1626b0a32e0cSBarry Smith             ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr);
16273270192aSSatish Balay           }
16283270192aSSatish Balay         }
16293270192aSSatish Balay       }
16303270192aSSatish Balay     }
1631b0a32e0cSBarry Smith     color = PETSC_DRAW_RED;
16323270192aSSatish Balay     for (i=0,row=0; i<mbs; i++,row+=bs) {
16333270192aSSatish Balay       for (j=a->i[i]; j<a->i[i+1]; j++) {
1634d0f46423SBarry Smith         y_l = A->rmap->N - row - 1.0; y_r = y_l + 1.0;
16353270192aSSatish Balay         x_l = a->j[j]*bs; x_r = x_l + 1.0;
16363270192aSSatish Balay         aa  = a->a + j*bs2;
16373270192aSSatish Balay         for (k=0; k<bs; k++) {
16383270192aSSatish Balay           for (l=0; l<bs; l++) {
16390e6d2581SBarry Smith             if (PetscRealPart(*aa++) <= 0.) continue;
1640b0a32e0cSBarry Smith             ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr);
16413270192aSSatish Balay           }
16423270192aSSatish Balay         }
16433270192aSSatish Balay       }
16443270192aSSatish Balay     }
1645b3e7f47fSJed Brown   } else {
1646b3e7f47fSJed Brown     /* use contour shading to indicate magnitude of values */
1647b3e7f47fSJed Brown     /* first determine max of all nonzero values */
1648b3e7f47fSJed Brown     PetscDraw popup;
1649b3e7f47fSJed Brown     PetscReal scale,maxv = 0.0;
1650b3e7f47fSJed Brown 
1651b3e7f47fSJed Brown     for (i=0; i<a->nz*a->bs2; i++) {
1652b3e7f47fSJed Brown       if (PetscAbsScalar(a->a[i]) > maxv) maxv = PetscAbsScalar(a->a[i]);
1653b3e7f47fSJed Brown     }
1654b3e7f47fSJed Brown     scale = (245.0 - PETSC_DRAW_BASIC_COLORS)/maxv;
1655b3e7f47fSJed Brown     ierr  = PetscDrawGetPopup(draw,&popup);CHKERRQ(ierr);
165626fbe8dcSKarl Rupp     if (popup) {
165726fbe8dcSKarl Rupp       ierr = PetscDrawScalePopup(popup,0.0,maxv);CHKERRQ(ierr);
165826fbe8dcSKarl Rupp     }
1659b3e7f47fSJed Brown     for (i=0,row=0; i<mbs; i++,row+=bs) {
1660b3e7f47fSJed Brown       for (j=a->i[i]; j<a->i[i+1]; j++) {
1661b3e7f47fSJed Brown         y_l = A->rmap->N - row - 1.0; y_r = y_l + 1.0;
1662b3e7f47fSJed Brown         x_l = a->j[j]*bs; x_r = x_l + 1.0;
1663b3e7f47fSJed Brown         aa  = a->a + j*bs2;
1664b3e7f47fSJed Brown         for (k=0; k<bs; k++) {
1665b3e7f47fSJed Brown           for (l=0; l<bs; l++) {
1666b3e7f47fSJed Brown             color = PETSC_DRAW_BASIC_COLORS + (PetscInt)(scale*PetscAbsScalar(*aa++));
1667b3e7f47fSJed Brown             ierr  = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr);
1668b3e7f47fSJed Brown           }
1669b3e7f47fSJed Brown         }
1670b3e7f47fSJed Brown       }
1671b3e7f47fSJed Brown     }
1672b3e7f47fSJed Brown   }
167377ed5343SBarry Smith   PetscFunctionReturn(0);
167477ed5343SBarry Smith }
16753270192aSSatish Balay 
16764a2ae208SSatish Balay #undef __FUNCT__
16774a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqBAIJ_Draw"
16786849ba73SBarry Smith static PetscErrorCode MatView_SeqBAIJ_Draw(Mat A,PetscViewer viewer)
167977ed5343SBarry Smith {
1680dfbe8321SBarry Smith   PetscErrorCode ierr;
16810e6d2581SBarry Smith   PetscReal      xl,yl,xr,yr,w,h;
1682b0a32e0cSBarry Smith   PetscDraw      draw;
1683ace3abfcSBarry Smith   PetscBool      isnull;
16843270192aSSatish Balay 
168577ed5343SBarry Smith   PetscFunctionBegin;
1686b0a32e0cSBarry Smith   ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
1687b0a32e0cSBarry Smith   ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
168877ed5343SBarry Smith 
168977ed5343SBarry Smith   ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",(PetscObject)viewer);CHKERRQ(ierr);
1690d0f46423SBarry Smith   xr   = A->cmap->n; yr = A->rmap->N; h = yr/10.0; w = xr/10.0;
169177ed5343SBarry Smith   xr  += w;    yr += h;  xl = -w;     yl = -h;
1692b0a32e0cSBarry Smith   ierr = PetscDrawSetCoordinates(draw,xl,yl,xr,yr);CHKERRQ(ierr);
1693b0a32e0cSBarry Smith   ierr = PetscDrawZoom(draw,MatView_SeqBAIJ_Draw_Zoom,A);CHKERRQ(ierr);
16940298fd71SBarry Smith   ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",NULL);CHKERRQ(ierr);
16953a40ed3dSBarry Smith   PetscFunctionReturn(0);
16963270192aSSatish Balay }
16973270192aSSatish Balay 
16984a2ae208SSatish Balay #undef __FUNCT__
16994a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqBAIJ"
1700dfbe8321SBarry Smith PetscErrorCode MatView_SeqBAIJ(Mat A,PetscViewer viewer)
17012593348eSBarry Smith {
1702dfbe8321SBarry Smith   PetscErrorCode ierr;
1703ace3abfcSBarry Smith   PetscBool      iascii,isbinary,isdraw;
17042593348eSBarry Smith 
17053a40ed3dSBarry Smith   PetscFunctionBegin;
1706251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
1707251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
1708251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
170932077d6dSBarry Smith   if (iascii) {
17103a40ed3dSBarry Smith     ierr = MatView_SeqBAIJ_ASCII(A,viewer);CHKERRQ(ierr);
17110f5bd95cSBarry Smith   } else if (isbinary) {
17123a40ed3dSBarry Smith     ierr = MatView_SeqBAIJ_Binary(A,viewer);CHKERRQ(ierr);
17130f5bd95cSBarry Smith   } else if (isdraw) {
17143a40ed3dSBarry Smith     ierr = MatView_SeqBAIJ_Draw(A,viewer);CHKERRQ(ierr);
17155cd90555SBarry Smith   } else {
1716a5e6ed63SBarry Smith     Mat B;
1717ceb03754SKris Buschelman     ierr = MatConvert(A,MATSEQAIJ,MAT_INITIAL_MATRIX,&B);CHKERRQ(ierr);
1718a5e6ed63SBarry Smith     ierr = MatView(B,viewer);CHKERRQ(ierr);
17196bf464f9SBarry Smith     ierr = MatDestroy(&B);CHKERRQ(ierr);
17202593348eSBarry Smith   }
17213a40ed3dSBarry Smith   PetscFunctionReturn(0);
17222593348eSBarry Smith }
1723b6490206SBarry Smith 
1724cd0e1443SSatish Balay 
17254a2ae208SSatish Balay #undef __FUNCT__
17264a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_SeqBAIJ"
1727c1ac3661SBarry Smith PetscErrorCode MatGetValues_SeqBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],PetscScalar v[])
1728cd0e1443SSatish Balay {
1729cd0e1443SSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data;
1730c1ac3661SBarry Smith   PetscInt    *rp,k,low,high,t,row,nrow,i,col,l,*aj = a->j;
1731c1ac3661SBarry Smith   PetscInt    *ai = a->i,*ailen = a->ilen;
1732d0f46423SBarry Smith   PetscInt    brow,bcol,ridx,cidx,bs=A->rmap->bs,bs2=a->bs2;
173397e567efSBarry Smith   MatScalar   *ap,*aa = a->a;
1734cd0e1443SSatish Balay 
17353a40ed3dSBarry Smith   PetscFunctionBegin;
17362d61bbb3SSatish Balay   for (k=0; k<m; k++) { /* loop over rows */
1737cd0e1443SSatish Balay     row = im[k]; brow = row/bs;
1738e32f2f54SBarry Smith     if (row < 0) {v += n; continue;} /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); */
1739e32f2f54SBarry Smith     if (row >= A->rmap->N) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %D too large", row);
17402d61bbb3SSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow];
17412c3acbe9SBarry Smith     nrow = ailen[brow];
17422d61bbb3SSatish Balay     for (l=0; l<n; l++) { /* loop over columns */
1743e32f2f54SBarry Smith       if (in[l] < 0) {v++; continue;} /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); */
1744e32f2f54SBarry Smith       if (in[l] >= A->cmap->n) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column %D too large", in[l]);
17452d61bbb3SSatish Balay       col  = in[l];
17462d61bbb3SSatish Balay       bcol = col/bs;
17472d61bbb3SSatish Balay       cidx = col%bs;
17482d61bbb3SSatish Balay       ridx = row%bs;
17492d61bbb3SSatish Balay       high = nrow;
17502d61bbb3SSatish Balay       low  = 0; /* assume unsorted */
17512d61bbb3SSatish Balay       while (high-low > 5) {
1752cd0e1443SSatish Balay         t = (low+high)/2;
1753cd0e1443SSatish Balay         if (rp[t] > bcol) high = t;
1754cd0e1443SSatish Balay         else             low  = t;
1755cd0e1443SSatish Balay       }
1756cd0e1443SSatish Balay       for (i=low; i<high; i++) {
1757cd0e1443SSatish Balay         if (rp[i] > bcol) break;
1758cd0e1443SSatish Balay         if (rp[i] == bcol) {
17592d61bbb3SSatish Balay           *v++ = ap[bs2*i+bs*cidx+ridx];
17602d61bbb3SSatish Balay           goto finished;
1761cd0e1443SSatish Balay         }
1762cd0e1443SSatish Balay       }
176397e567efSBarry Smith       *v++ = 0.0;
17642d61bbb3SSatish Balay finished:;
1765cd0e1443SSatish Balay     }
1766cd0e1443SSatish Balay   }
17673a40ed3dSBarry Smith   PetscFunctionReturn(0);
1768cd0e1443SSatish Balay }
1769cd0e1443SSatish Balay 
17704a2ae208SSatish Balay #undef __FUNCT__
17714a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_SeqBAIJ"
1772dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is)
177392c4ed94SBarry Smith {
177492c4ed94SBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
1775e2ee6c50SBarry Smith   PetscInt          *rp,k,low,high,t,ii,jj,row,nrow,i,col,l,rmax,N,lastcol = -1;
1776c1ac3661SBarry Smith   PetscInt          *imax=a->imax,*ai=a->i,*ailen=a->ilen;
17776849ba73SBarry Smith   PetscErrorCode    ierr;
1778d0f46423SBarry Smith   PetscInt          *aj        =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs,stepval;
1779ace3abfcSBarry Smith   PetscBool         roworiented=a->roworiented;
1780dd6ea824SBarry Smith   const PetscScalar *value     = v;
1781f15d580aSBarry Smith   MatScalar         *ap,*aa = a->a,*bap;
178292c4ed94SBarry Smith 
17833a40ed3dSBarry Smith   PetscFunctionBegin;
17840e324ae4SSatish Balay   if (roworiented) {
17850e324ae4SSatish Balay     stepval = (n-1)*bs;
17860e324ae4SSatish Balay   } else {
17870e324ae4SSatish Balay     stepval = (m-1)*bs;
17880e324ae4SSatish Balay   }
178992c4ed94SBarry Smith   for (k=0; k<m; k++) { /* loop over added rows */
179092c4ed94SBarry Smith     row = im[k];
17915ef9f2a5SBarry Smith     if (row < 0) continue;
17922515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
17932f7d4af7SBarry Smith     if (row >= a->mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block row index too large %D max %D",row,a->mbs-1);
179492c4ed94SBarry Smith #endif
179592c4ed94SBarry Smith     rp   = aj + ai[row];
179692c4ed94SBarry Smith     ap   = aa + bs2*ai[row];
179792c4ed94SBarry Smith     rmax = imax[row];
179892c4ed94SBarry Smith     nrow = ailen[row];
179992c4ed94SBarry Smith     low  = 0;
1800c71e6ed7SBarry Smith     high = nrow;
180192c4ed94SBarry Smith     for (l=0; l<n; l++) { /* loop over added columns */
18025ef9f2a5SBarry Smith       if (in[l] < 0) continue;
18032515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
18042f7d4af7SBarry Smith       if (in[l] >= a->nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block column index too large %D max %D",in[l],a->nbs-1);
180592c4ed94SBarry Smith #endif
180692c4ed94SBarry Smith       col = in[l];
180792c4ed94SBarry Smith       if (roworiented) {
180853ef36baSBarry Smith         value = v + (k*(stepval+bs) + l)*bs;
18090e324ae4SSatish Balay       } else {
181053ef36baSBarry Smith         value = v + (l*(stepval+bs) + k)*bs;
181192c4ed94SBarry Smith       }
181226fbe8dcSKarl Rupp       if (col <= lastcol) low = 0;
181326fbe8dcSKarl Rupp       else high = nrow;
1814e2ee6c50SBarry Smith       lastcol = col;
181592c4ed94SBarry Smith       while (high-low > 7) {
181692c4ed94SBarry Smith         t = (low+high)/2;
181792c4ed94SBarry Smith         if (rp[t] > col) high = t;
181892c4ed94SBarry Smith         else             low  = t;
181992c4ed94SBarry Smith       }
182092c4ed94SBarry Smith       for (i=low; i<high; i++) {
182192c4ed94SBarry Smith         if (rp[i] > col) break;
182292c4ed94SBarry Smith         if (rp[i] == col) {
18238a84c255SSatish Balay           bap = ap +  bs2*i;
18240e324ae4SSatish Balay           if (roworiented) {
18258a84c255SSatish Balay             if (is == ADD_VALUES) {
1826dd9472c6SBarry Smith               for (ii=0; ii<bs; ii++,value+=stepval) {
1827dd9472c6SBarry Smith                 for (jj=ii; jj<bs2; jj+=bs) {
18288a84c255SSatish Balay                   bap[jj] += *value++;
1829dd9472c6SBarry Smith                 }
1830dd9472c6SBarry Smith               }
18310e324ae4SSatish Balay             } else {
1832dd9472c6SBarry Smith               for (ii=0; ii<bs; ii++,value+=stepval) {
1833dd9472c6SBarry Smith                 for (jj=ii; jj<bs2; jj+=bs) {
18340e324ae4SSatish Balay                   bap[jj] = *value++;
18358a84c255SSatish Balay                 }
1836dd9472c6SBarry Smith               }
1837dd9472c6SBarry Smith             }
18380e324ae4SSatish Balay           } else {
18390e324ae4SSatish Balay             if (is == ADD_VALUES) {
184053ef36baSBarry Smith               for (ii=0; ii<bs; ii++,value+=bs+stepval) {
1841dd9472c6SBarry Smith                 for (jj=0; jj<bs; jj++) {
184253ef36baSBarry Smith                   bap[jj] += value[jj];
1843dd9472c6SBarry Smith                 }
184453ef36baSBarry Smith                 bap += bs;
1845dd9472c6SBarry Smith               }
18460e324ae4SSatish Balay             } else {
184753ef36baSBarry Smith               for (ii=0; ii<bs; ii++,value+=bs+stepval) {
1848dd9472c6SBarry Smith                 for (jj=0; jj<bs; jj++) {
184953ef36baSBarry Smith                   bap[jj]  = value[jj];
18500e324ae4SSatish Balay                 }
185153ef36baSBarry Smith                 bap += bs;
18528a84c255SSatish Balay               }
1853dd9472c6SBarry Smith             }
1854dd9472c6SBarry Smith           }
1855f1241b54SBarry Smith           goto noinsert2;
185692c4ed94SBarry Smith         }
185792c4ed94SBarry Smith       }
185889280ab3SLois Curfman McInnes       if (nonew == 1) goto noinsert2;
18592f7d4af7SBarry Smith       if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new blocked index new nonzero block (%D, %D) in the matrix", row, col);
1860fef13f97SBarry Smith       MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
1861c03d1d03SSatish Balay       N = nrow++ - 1; high++;
186292c4ed94SBarry Smith       /* shift up all the later entries in this row */
186392c4ed94SBarry Smith       for (ii=N; ii>=i; ii--) {
186492c4ed94SBarry Smith         rp[ii+1] = rp[ii];
1865549d3d68SSatish Balay         ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr);
186692c4ed94SBarry Smith       }
1867549d3d68SSatish Balay       if (N >= i) {
1868549d3d68SSatish Balay         ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr);
1869549d3d68SSatish Balay       }
187092c4ed94SBarry Smith       rp[i] = col;
18718a84c255SSatish Balay       bap   = ap +  bs2*i;
18720e324ae4SSatish Balay       if (roworiented) {
1873dd9472c6SBarry Smith         for (ii=0; ii<bs; ii++,value+=stepval) {
1874dd9472c6SBarry Smith           for (jj=ii; jj<bs2; jj+=bs) {
18750e324ae4SSatish Balay             bap[jj] = *value++;
1876dd9472c6SBarry Smith           }
1877dd9472c6SBarry Smith         }
18780e324ae4SSatish Balay       } else {
1879dd9472c6SBarry Smith         for (ii=0; ii<bs; ii++,value+=stepval) {
1880dd9472c6SBarry Smith           for (jj=0; jj<bs; jj++) {
18810e324ae4SSatish Balay             *bap++ = *value++;
18820e324ae4SSatish Balay           }
1883dd9472c6SBarry Smith         }
1884dd9472c6SBarry Smith       }
1885f1241b54SBarry Smith noinsert2:;
188692c4ed94SBarry Smith       low = i;
188792c4ed94SBarry Smith     }
188892c4ed94SBarry Smith     ailen[row] = nrow;
188992c4ed94SBarry Smith   }
18903a40ed3dSBarry Smith   PetscFunctionReturn(0);
189192c4ed94SBarry Smith }
189226e093fcSHong Zhang 
18934a2ae208SSatish Balay #undef __FUNCT__
18944a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_SeqBAIJ"
1895dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_SeqBAIJ(Mat A,MatAssemblyType mode)
1896584200bdSSatish Balay {
1897584200bdSSatish Balay   Mat_SeqBAIJ    *a     = (Mat_SeqBAIJ*)A->data;
1898c1ac3661SBarry Smith   PetscInt       fshift = 0,i,j,*ai = a->i,*aj = a->j,*imax = a->imax;
1899d0f46423SBarry Smith   PetscInt       m      = A->rmap->N,*ip,N,*ailen = a->ilen;
19006849ba73SBarry Smith   PetscErrorCode ierr;
1901c1ac3661SBarry Smith   PetscInt       mbs  = a->mbs,bs2 = a->bs2,rmax = 0;
19023f1db9ecSBarry Smith   MatScalar      *aa  = a->a,*ap;
19033447b6efSHong Zhang   PetscReal      ratio=0.6;
1904584200bdSSatish Balay 
19053a40ed3dSBarry Smith   PetscFunctionBegin;
19063a40ed3dSBarry Smith   if (mode == MAT_FLUSH_ASSEMBLY) PetscFunctionReturn(0);
1907584200bdSSatish Balay 
190843ee02c3SBarry Smith   if (m) rmax = ailen[0];
1909584200bdSSatish Balay   for (i=1; i<mbs; i++) {
1910584200bdSSatish Balay     /* move each row back by the amount of empty slots (fshift) before it*/
1911584200bdSSatish Balay     fshift += imax[i-1] - ailen[i-1];
1912d402145bSBarry Smith     rmax    = PetscMax(rmax,ailen[i]);
1913584200bdSSatish Balay     if (fshift) {
1914a7c10996SSatish Balay       ip = aj + ai[i]; ap = aa + bs2*ai[i];
1915584200bdSSatish Balay       N  = ailen[i];
1916584200bdSSatish Balay       for (j=0; j<N; j++) {
1917584200bdSSatish Balay         ip[j-fshift] = ip[j];
191826fbe8dcSKarl Rupp 
1919549d3d68SSatish Balay         ierr = PetscMemcpy(ap+(j-fshift)*bs2,ap+j*bs2,bs2*sizeof(MatScalar));CHKERRQ(ierr);
1920584200bdSSatish Balay       }
1921584200bdSSatish Balay     }
1922584200bdSSatish Balay     ai[i] = ai[i-1] + ailen[i-1];
1923584200bdSSatish Balay   }
1924584200bdSSatish Balay   if (mbs) {
1925584200bdSSatish Balay     fshift += imax[mbs-1] - ailen[mbs-1];
1926584200bdSSatish Balay     ai[mbs] = ai[mbs-1] + ailen[mbs-1];
1927584200bdSSatish Balay   }
19287c565772SBarry Smith 
1929584200bdSSatish Balay   /* reset ilen and imax for each row */
19307c565772SBarry Smith   a->nonzerorowcnt = 0;
1931584200bdSSatish Balay   for (i=0; i<mbs; i++) {
1932584200bdSSatish Balay     ailen[i] = imax[i] = ai[i+1] - ai[i];
19337c565772SBarry Smith     a->nonzerorowcnt += ((ai[i+1] - ai[i]) > 0);
1934584200bdSSatish Balay   }
1935a7c10996SSatish Balay   a->nz = ai[mbs];
1936584200bdSSatish Balay 
1937584200bdSSatish Balay   /* diagonals may have moved, so kill the diagonal pointers */
1938b01c7715SBarry Smith   a->idiagvalid = PETSC_FALSE;
1939584200bdSSatish Balay   if (fshift && a->diag) {
1940606d414cSSatish Balay     ierr    = PetscFree(a->diag);CHKERRQ(ierr);
19413bb1ff40SBarry Smith     ierr    = PetscLogObjectMemory((PetscObject)A,-(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr);
1942584200bdSSatish Balay     a->diag = 0;
1943584200bdSSatish Balay   }
194465e19b50SBarry Smith   if (fshift && a->nounused == -1) SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_PLIB, "Unused space detected in matrix: %D X %D block size %D, %D unneeded", m, A->cmap->n, A->rmap->bs, fshift*bs2);
1945d0f46423SBarry Smith   ierr = PetscInfo5(A,"Matrix size: %D X %D, block size %D; storage space: %D unneeded, %D used\n",m,A->cmap->n,A->rmap->bs,fshift*bs2,a->nz*bs2);CHKERRQ(ierr);
1946ae15b995SBarry Smith   ierr = PetscInfo1(A,"Number of mallocs during MatSetValues is %D\n",a->reallocs);CHKERRQ(ierr);
1947ae15b995SBarry Smith   ierr = PetscInfo1(A,"Most nonzeros blocks in any row is %D\n",rmax);CHKERRQ(ierr);
194826fbe8dcSKarl Rupp 
19498e58a170SBarry Smith   A->info.mallocs    += a->reallocs;
1950e2f3b5e9SSatish Balay   a->reallocs         = 0;
19510e6d2581SBarry Smith   A->info.nz_unneeded = (PetscReal)fshift*bs2;
1952647a6520SHong Zhang   a->rmax             = rmax;
1953cf4441caSHong Zhang 
195411e456e1SBarry Smith   ierr = MatCheckCompressedRow(A,a->nonzerorowcnt,&a->compressedrow,a->i,mbs,ratio);CHKERRQ(ierr);
19553a40ed3dSBarry Smith   PetscFunctionReturn(0);
1956584200bdSSatish Balay }
1957584200bdSSatish Balay 
1958bea157c4SSatish Balay /*
1959bea157c4SSatish Balay    This function returns an array of flags which indicate the locations of contiguous
1960bea157c4SSatish Balay    blocks that should be zeroed. for eg: if bs = 3  and is = [0,1,2,3,5,6,7,8,9]
1961bea157c4SSatish Balay    then the resulting sizes = [3,1,1,3,1] correspondig to sets [(0,1,2),(3),(5),(6,7,8),(9)]
1962bea157c4SSatish Balay    Assume: sizes should be long enough to hold all the values.
1963bea157c4SSatish Balay */
19644a2ae208SSatish Balay #undef __FUNCT__
19654a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_SeqBAIJ_Check_Blocks"
1966c1ac3661SBarry Smith static PetscErrorCode MatZeroRows_SeqBAIJ_Check_Blocks(PetscInt idx[],PetscInt n,PetscInt bs,PetscInt sizes[], PetscInt *bs_max)
1967d9b7c43dSSatish Balay {
1968c1ac3661SBarry Smith   PetscInt  i,j,k,row;
1969ace3abfcSBarry Smith   PetscBool flg;
19703a40ed3dSBarry Smith 
1971433994e6SBarry Smith   PetscFunctionBegin;
1972bea157c4SSatish Balay   for (i=0,j=0; i<n; j++) {
1973bea157c4SSatish Balay     row = idx[i];
1974bea157c4SSatish Balay     if (row%bs!=0) { /* Not the begining of a block */
1975bea157c4SSatish Balay       sizes[j] = 1;
1976bea157c4SSatish Balay       i++;
1977e4fda26cSSatish Balay     } else if (i+bs > n) { /* complete block doesn't exist (at idx end) */
1978bea157c4SSatish Balay       sizes[j] = 1;         /* Also makes sure atleast 'bs' values exist for next else */
1979bea157c4SSatish Balay       i++;
1980bea157c4SSatish Balay     } else { /* Begining of the block, so check if the complete block exists */
1981bea157c4SSatish Balay       flg = PETSC_TRUE;
1982bea157c4SSatish Balay       for (k=1; k<bs; k++) {
1983bea157c4SSatish Balay         if (row+k != idx[i+k]) { /* break in the block */
1984bea157c4SSatish Balay           flg = PETSC_FALSE;
1985bea157c4SSatish Balay           break;
1986d9b7c43dSSatish Balay         }
1987bea157c4SSatish Balay       }
1988abc0a331SBarry Smith       if (flg) { /* No break in the bs */
1989bea157c4SSatish Balay         sizes[j] = bs;
1990bea157c4SSatish Balay         i       += bs;
1991bea157c4SSatish Balay       } else {
1992bea157c4SSatish Balay         sizes[j] = 1;
1993bea157c4SSatish Balay         i++;
1994bea157c4SSatish Balay       }
1995bea157c4SSatish Balay     }
1996bea157c4SSatish Balay   }
1997bea157c4SSatish Balay   *bs_max = j;
19983a40ed3dSBarry Smith   PetscFunctionReturn(0);
1999d9b7c43dSSatish Balay }
2000d9b7c43dSSatish Balay 
20014a2ae208SSatish Balay #undef __FUNCT__
20024a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_SeqBAIJ"
20032b40b63fSBarry Smith PetscErrorCode MatZeroRows_SeqBAIJ(Mat A,PetscInt is_n,const PetscInt is_idx[],PetscScalar diag,Vec x, Vec b)
2004d9b7c43dSSatish Balay {
2005d9b7c43dSSatish Balay   Mat_SeqBAIJ       *baij=(Mat_SeqBAIJ*)A->data;
2006dfbe8321SBarry Smith   PetscErrorCode    ierr;
2007f4df32b1SMatthew Knepley   PetscInt          i,j,k,count,*rows;
2008d0f46423SBarry Smith   PetscInt          bs=A->rmap->bs,bs2=baij->bs2,*sizes,row,bs_max;
200987828ca2SBarry Smith   PetscScalar       zero = 0.0;
20103f1db9ecSBarry Smith   MatScalar         *aa;
201197b48c8fSBarry Smith   const PetscScalar *xx;
201297b48c8fSBarry Smith   PetscScalar       *bb;
2013d9b7c43dSSatish Balay 
20143a40ed3dSBarry Smith   PetscFunctionBegin;
201597b48c8fSBarry Smith   /* fix right hand side if needed */
201697b48c8fSBarry Smith   if (x && b) {
201797b48c8fSBarry Smith     ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr);
201897b48c8fSBarry Smith     ierr = VecGetArray(b,&bb);CHKERRQ(ierr);
201997b48c8fSBarry Smith     for (i=0; i<is_n; i++) {
202097b48c8fSBarry Smith       bb[is_idx[i]] = diag*xx[is_idx[i]];
202197b48c8fSBarry Smith     }
202297b48c8fSBarry Smith     ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr);
202397b48c8fSBarry Smith     ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr);
202497b48c8fSBarry Smith   }
202597b48c8fSBarry Smith 
2026d9b7c43dSSatish Balay   /* Make a copy of the IS and  sort it */
2027bea157c4SSatish Balay   /* allocate memory for rows,sizes */
2028dcca6d9dSJed Brown   ierr = PetscMalloc2(is_n,&rows,2*is_n,&sizes);CHKERRQ(ierr);
2029bea157c4SSatish Balay 
2030563b5814SBarry Smith   /* copy IS values to rows, and sort them */
203126fbe8dcSKarl Rupp   for (i=0; i<is_n; i++) rows[i] = is_idx[i];
2032bea157c4SSatish Balay   ierr = PetscSortInt(is_n,rows);CHKERRQ(ierr);
203397b48c8fSBarry Smith 
2034a9817697SBarry Smith   if (baij->keepnonzeropattern) {
203526fbe8dcSKarl Rupp     for (i=0; i<is_n; i++) sizes[i] = 1;
2036dffd3267SBarry Smith     bs_max          = is_n;
2037dffd3267SBarry Smith   } else {
2038bea157c4SSatish Balay     ierr = MatZeroRows_SeqBAIJ_Check_Blocks(rows,is_n,bs,sizes,&bs_max);CHKERRQ(ierr);
2039e56f5c9eSBarry Smith     A->nonzerostate++;
2040dffd3267SBarry Smith   }
2041bea157c4SSatish Balay 
2042bea157c4SSatish Balay   for (i=0,j=0; i<bs_max; j+=sizes[i],i++) {
2043bea157c4SSatish Balay     row = rows[j];
2044e32f2f54SBarry Smith     if (row < 0 || row > A->rmap->N) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"row %D out of range",row);
2045bea157c4SSatish Balay     count = (baij->i[row/bs +1] - baij->i[row/bs])*bs;
2046b31fbe3bSSatish Balay     aa    = ((MatScalar*)(baij->a)) + baij->i[row/bs]*bs2 + (row%bs);
2047a9817697SBarry Smith     if (sizes[i] == bs && !baij->keepnonzeropattern) {
2048d4a378daSJed Brown       if (diag != (PetscScalar)0.0) {
2049bea157c4SSatish Balay         if (baij->ilen[row/bs] > 0) {
2050bea157c4SSatish Balay           baij->ilen[row/bs]       = 1;
2051bea157c4SSatish Balay           baij->j[baij->i[row/bs]] = row/bs;
205226fbe8dcSKarl Rupp 
2053bea157c4SSatish Balay           ierr = PetscMemzero(aa,count*bs*sizeof(MatScalar));CHKERRQ(ierr);
2054a07cd24cSSatish Balay         }
2055563b5814SBarry Smith         /* Now insert all the diagonal values for this bs */
2056bea157c4SSatish Balay         for (k=0; k<bs; k++) {
2057f4df32b1SMatthew Knepley           ierr = (*A->ops->setvalues)(A,1,rows+j+k,1,rows+j+k,&diag,INSERT_VALUES);CHKERRQ(ierr);
2058bea157c4SSatish Balay         }
2059f4df32b1SMatthew Knepley       } else { /* (diag == 0.0) */
2060bea157c4SSatish Balay         baij->ilen[row/bs] = 0;
2061f4df32b1SMatthew Knepley       } /* end (diag == 0.0) */
2062bea157c4SSatish Balay     } else { /* (sizes[i] != bs) */
2063aa482453SBarry Smith #if defined(PETSC_USE_DEBUG)
2064e32f2f54SBarry Smith       if (sizes[i] != 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Internal Error. Value should be 1");
2065bea157c4SSatish Balay #endif
2066bea157c4SSatish Balay       for (k=0; k<count; k++) {
2067d9b7c43dSSatish Balay         aa[0] =  zero;
2068d9b7c43dSSatish Balay         aa   += bs;
2069d9b7c43dSSatish Balay       }
2070d4a378daSJed Brown       if (diag != (PetscScalar)0.0) {
2071f4df32b1SMatthew Knepley         ierr = (*A->ops->setvalues)(A,1,rows+j,1,rows+j,&diag,INSERT_VALUES);CHKERRQ(ierr);
2072d9b7c43dSSatish Balay       }
2073d9b7c43dSSatish Balay     }
2074bea157c4SSatish Balay   }
2075bea157c4SSatish Balay 
2076fca92195SBarry Smith   ierr = PetscFree2(rows,sizes);CHKERRQ(ierr);
20779a8dea36SBarry Smith   ierr = MatAssemblyEnd_SeqBAIJ(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
20783a40ed3dSBarry Smith   PetscFunctionReturn(0);
2079d9b7c43dSSatish Balay }
20801c351548SSatish Balay 
20814a2ae208SSatish Balay #undef __FUNCT__
208297b48c8fSBarry Smith #define __FUNCT__ "MatZeroRowsColumns_SeqBAIJ"
208397b48c8fSBarry Smith PetscErrorCode MatZeroRowsColumns_SeqBAIJ(Mat A,PetscInt is_n,const PetscInt is_idx[],PetscScalar diag,Vec x, Vec b)
208497b48c8fSBarry Smith {
208597b48c8fSBarry Smith   Mat_SeqBAIJ       *baij=(Mat_SeqBAIJ*)A->data;
208697b48c8fSBarry Smith   PetscErrorCode    ierr;
208797b48c8fSBarry Smith   PetscInt          i,j,k,count;
208897b48c8fSBarry Smith   PetscInt          bs   =A->rmap->bs,bs2=baij->bs2,row,col;
208997b48c8fSBarry Smith   PetscScalar       zero = 0.0;
209097b48c8fSBarry Smith   MatScalar         *aa;
209197b48c8fSBarry Smith   const PetscScalar *xx;
209297b48c8fSBarry Smith   PetscScalar       *bb;
209356777dd2SBarry Smith   PetscBool         *zeroed,vecs = PETSC_FALSE;
209497b48c8fSBarry Smith 
209597b48c8fSBarry Smith   PetscFunctionBegin;
209697b48c8fSBarry Smith   /* fix right hand side if needed */
209797b48c8fSBarry Smith   if (x && b) {
209897b48c8fSBarry Smith     ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr);
209997b48c8fSBarry Smith     ierr = VecGetArray(b,&bb);CHKERRQ(ierr);
210056777dd2SBarry Smith     vecs = PETSC_TRUE;
210197b48c8fSBarry Smith   }
210297b48c8fSBarry Smith 
210397b48c8fSBarry Smith   /* zero the columns */
21041795a4d1SJed Brown   ierr = PetscCalloc1(A->rmap->n,&zeroed);CHKERRQ(ierr);
210597b48c8fSBarry Smith   for (i=0; i<is_n; i++) {
210697b48c8fSBarry Smith     if (is_idx[i] < 0 || is_idx[i] >= A->rmap->N) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"row %D out of range",is_idx[i]);
210797b48c8fSBarry Smith     zeroed[is_idx[i]] = PETSC_TRUE;
210897b48c8fSBarry Smith   }
210997b48c8fSBarry Smith   for (i=0; i<A->rmap->N; i++) {
211097b48c8fSBarry Smith     if (!zeroed[i]) {
211197b48c8fSBarry Smith       row = i/bs;
211297b48c8fSBarry Smith       for (j=baij->i[row]; j<baij->i[row+1]; j++) {
211397b48c8fSBarry Smith         for (k=0; k<bs; k++) {
211497b48c8fSBarry Smith           col = bs*baij->j[j] + k;
211597b48c8fSBarry Smith           if (zeroed[col]) {
211697b48c8fSBarry Smith             aa = ((MatScalar*)(baij->a)) + j*bs2 + (i%bs) + bs*k;
211756777dd2SBarry Smith             if (vecs) bb[i] -= aa[0]*xx[col];
211897b48c8fSBarry Smith             aa[0] = 0.0;
211997b48c8fSBarry Smith           }
212097b48c8fSBarry Smith         }
212197b48c8fSBarry Smith       }
212256777dd2SBarry Smith     } else if (vecs) bb[i] = diag*xx[i];
212397b48c8fSBarry Smith   }
212497b48c8fSBarry Smith   ierr = PetscFree(zeroed);CHKERRQ(ierr);
212556777dd2SBarry Smith   if (vecs) {
212656777dd2SBarry Smith     ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr);
212756777dd2SBarry Smith     ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr);
212856777dd2SBarry Smith   }
212997b48c8fSBarry Smith 
213097b48c8fSBarry Smith   /* zero the rows */
213197b48c8fSBarry Smith   for (i=0; i<is_n; i++) {
213297b48c8fSBarry Smith     row   = is_idx[i];
213397b48c8fSBarry Smith     count = (baij->i[row/bs +1] - baij->i[row/bs])*bs;
213497b48c8fSBarry Smith     aa    = ((MatScalar*)(baij->a)) + baij->i[row/bs]*bs2 + (row%bs);
213597b48c8fSBarry Smith     for (k=0; k<count; k++) {
213697b48c8fSBarry Smith       aa[0] =  zero;
213797b48c8fSBarry Smith       aa   += bs;
213897b48c8fSBarry Smith     }
2139d4a378daSJed Brown     if (diag != (PetscScalar)0.0) {
214097b48c8fSBarry Smith       ierr = (*A->ops->setvalues)(A,1,&row,1,&row,&diag,INSERT_VALUES);CHKERRQ(ierr);
214197b48c8fSBarry Smith     }
214297b48c8fSBarry Smith   }
214397b48c8fSBarry Smith   ierr = MatAssemblyEnd_SeqBAIJ(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
214497b48c8fSBarry Smith   PetscFunctionReturn(0);
214597b48c8fSBarry Smith }
214697b48c8fSBarry Smith 
214797b48c8fSBarry Smith #undef __FUNCT__
21484a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_SeqBAIJ"
2149c1ac3661SBarry Smith PetscErrorCode MatSetValues_SeqBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is)
21502d61bbb3SSatish Balay {
21512d61bbb3SSatish Balay   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
2152e2ee6c50SBarry Smith   PetscInt       *rp,k,low,high,t,ii,row,nrow,i,col,l,rmax,N,lastcol = -1;
2153c1ac3661SBarry Smith   PetscInt       *imax=a->imax,*ai=a->i,*ailen=a->ilen;
2154d0f46423SBarry Smith   PetscInt       *aj  =a->j,nonew=a->nonew,bs=A->rmap->bs,brow,bcol;
21556849ba73SBarry Smith   PetscErrorCode ierr;
2156c1ac3661SBarry Smith   PetscInt       ridx,cidx,bs2=a->bs2;
2157ace3abfcSBarry Smith   PetscBool      roworiented=a->roworiented;
21583f1db9ecSBarry Smith   MatScalar      *ap,value,*aa=a->a,*bap;
21592d61bbb3SSatish Balay 
21602d61bbb3SSatish Balay   PetscFunctionBegin;
21612d61bbb3SSatish Balay   for (k=0; k<m; k++) { /* loop over added rows */
2162085a36d4SBarry Smith     row  = im[k];
2163085a36d4SBarry Smith     brow = row/bs;
21645ef9f2a5SBarry Smith     if (row < 0) continue;
21652515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
2166e32f2f54SBarry Smith     if (row >= A->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,A->rmap->N-1);
21672d61bbb3SSatish Balay #endif
21682d61bbb3SSatish Balay     rp   = aj + ai[brow];
21692d61bbb3SSatish Balay     ap   = aa + bs2*ai[brow];
21702d61bbb3SSatish Balay     rmax = imax[brow];
21712d61bbb3SSatish Balay     nrow = ailen[brow];
21722d61bbb3SSatish Balay     low  = 0;
2173c71e6ed7SBarry Smith     high = nrow;
21742d61bbb3SSatish Balay     for (l=0; l<n; l++) { /* loop over added columns */
21755ef9f2a5SBarry Smith       if (in[l] < 0) continue;
21762515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
2177e32f2f54SBarry Smith       if (in[l] >= A->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[l],A->cmap->n-1);
21782d61bbb3SSatish Balay #endif
21792d61bbb3SSatish Balay       col  = in[l]; bcol = col/bs;
21802d61bbb3SSatish Balay       ridx = row % bs; cidx = col % bs;
21812d61bbb3SSatish Balay       if (roworiented) {
21825ef9f2a5SBarry Smith         value = v[l + k*n];
21832d61bbb3SSatish Balay       } else {
21842d61bbb3SSatish Balay         value = v[k + l*m];
21852d61bbb3SSatish Balay       }
21867cd84e04SBarry Smith       if (col <= lastcol) low = 0; else high = nrow;
2187e2ee6c50SBarry Smith       lastcol = col;
21882d61bbb3SSatish Balay       while (high-low > 7) {
21892d61bbb3SSatish Balay         t = (low+high)/2;
21902d61bbb3SSatish Balay         if (rp[t] > bcol) high = t;
21912d61bbb3SSatish Balay         else              low  = t;
21922d61bbb3SSatish Balay       }
21932d61bbb3SSatish Balay       for (i=low; i<high; i++) {
21942d61bbb3SSatish Balay         if (rp[i] > bcol) break;
21952d61bbb3SSatish Balay         if (rp[i] == bcol) {
21962d61bbb3SSatish Balay           bap = ap +  bs2*i + bs*cidx + ridx;
21972d61bbb3SSatish Balay           if (is == ADD_VALUES) *bap += value;
21982d61bbb3SSatish Balay           else                  *bap  = value;
21992d61bbb3SSatish Balay           goto noinsert1;
22002d61bbb3SSatish Balay         }
22012d61bbb3SSatish Balay       }
22022d61bbb3SSatish Balay       if (nonew == 1) goto noinsert1;
2203e32f2f54SBarry Smith       if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col);
2204fef13f97SBarry Smith       MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
2205c03d1d03SSatish Balay       N = nrow++ - 1; high++;
22062d61bbb3SSatish Balay       /* shift up all the later entries in this row */
22072d61bbb3SSatish Balay       for (ii=N; ii>=i; ii--) {
22082d61bbb3SSatish Balay         rp[ii+1] = rp[ii];
2209549d3d68SSatish Balay         ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr);
22102d61bbb3SSatish Balay       }
2211549d3d68SSatish Balay       if (N>=i) {
2212549d3d68SSatish Balay         ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr);
2213549d3d68SSatish Balay       }
22142d61bbb3SSatish Balay       rp[i]                      = bcol;
22152d61bbb3SSatish Balay       ap[bs2*i + bs*cidx + ridx] = value;
2216085a36d4SBarry Smith       a->nz++;
2217e56f5c9eSBarry Smith       A->nonzerostate++;
22182d61bbb3SSatish Balay noinsert1:;
22192d61bbb3SSatish Balay       low = i;
22202d61bbb3SSatish Balay     }
22212d61bbb3SSatish Balay     ailen[brow] = nrow;
22222d61bbb3SSatish Balay   }
22232d61bbb3SSatish Balay   PetscFunctionReturn(0);
22242d61bbb3SSatish Balay }
22252d61bbb3SSatish Balay 
22264a2ae208SSatish Balay #undef __FUNCT__
22274a2ae208SSatish Balay #define __FUNCT__ "MatILUFactor_SeqBAIJ"
22280481f469SBarry Smith PetscErrorCode MatILUFactor_SeqBAIJ(Mat inA,IS row,IS col,const MatFactorInfo *info)
22292d61bbb3SSatish Balay {
22302d61bbb3SSatish Balay   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)inA->data;
22312d61bbb3SSatish Balay   Mat            outA;
2232dfbe8321SBarry Smith   PetscErrorCode ierr;
2233ace3abfcSBarry Smith   PetscBool      row_identity,col_identity;
22342d61bbb3SSatish Balay 
22352d61bbb3SSatish Balay   PetscFunctionBegin;
2236e32f2f54SBarry Smith   if (info->levels != 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only levels = 0 supported for in-place ILU");
2237667159a5SBarry Smith   ierr = ISIdentity(row,&row_identity);CHKERRQ(ierr);
2238667159a5SBarry Smith   ierr = ISIdentity(col,&col_identity);CHKERRQ(ierr);
2239f23aa3ddSBarry Smith   if (!row_identity || !col_identity) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Row and column permutations must be identity for in-place ILU");
22402d61bbb3SSatish Balay 
22412d61bbb3SSatish Balay   outA            = inA;
2242d5f3da31SBarry Smith   inA->factortype = MAT_FACTOR_LU;
22432d61bbb3SSatish Balay 
2244c4992f7dSBarry Smith   ierr = MatMarkDiagonal_SeqBAIJ(inA);CHKERRQ(ierr);
2245cf242676SKris Buschelman 
2246c38d4ed2SBarry Smith   ierr   = PetscObjectReference((PetscObject)row);CHKERRQ(ierr);
22476bf464f9SBarry Smith   ierr   = ISDestroy(&a->row);CHKERRQ(ierr);
2248c3122656SLisandro Dalcin   a->row = row;
2249c38d4ed2SBarry Smith   ierr   = PetscObjectReference((PetscObject)col);CHKERRQ(ierr);
22506bf464f9SBarry Smith   ierr   = ISDestroy(&a->col);CHKERRQ(ierr);
2251c3122656SLisandro Dalcin   a->col = col;
2252c38d4ed2SBarry Smith 
2253c38d4ed2SBarry Smith   /* Create the invert permutation so that it can be used in MatLUFactorNumeric() */
22546bf464f9SBarry Smith   ierr = ISDestroy(&a->icol);CHKERRQ(ierr);
22554c49b128SBarry Smith   ierr = ISInvertPermutation(col,PETSC_DECIDE,&a->icol);CHKERRQ(ierr);
22563bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)inA,(PetscObject)a->icol);CHKERRQ(ierr);
2257c38d4ed2SBarry Smith 
2258ace3abfcSBarry Smith   ierr = MatSeqBAIJSetNumericFactorization_inplace(inA,(PetscBool)(row_identity && col_identity));CHKERRQ(ierr);
2259c38d4ed2SBarry Smith   if (!a->solve_work) {
2260854ce69bSBarry Smith     ierr = PetscMalloc1(inA->rmap->N+inA->rmap->bs,&a->solve_work);CHKERRQ(ierr);
22613bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)inA,(inA->rmap->N+inA->rmap->bs)*sizeof(PetscScalar));CHKERRQ(ierr);
2262c38d4ed2SBarry Smith   }
2263719d5645SBarry Smith   ierr = MatLUFactorNumeric(outA,inA,info);CHKERRQ(ierr);
22642d61bbb3SSatish Balay   PetscFunctionReturn(0);
22652d61bbb3SSatish Balay }
2266d9b7c43dSSatish Balay 
22674a2ae208SSatish Balay #undef __FUNCT__
22684a2ae208SSatish Balay #define __FUNCT__ "MatSeqBAIJSetColumnIndices_SeqBAIJ"
22697087cfbeSBarry Smith PetscErrorCode  MatSeqBAIJSetColumnIndices_SeqBAIJ(Mat mat,PetscInt *indices)
227027a8da17SBarry Smith {
227127a8da17SBarry Smith   Mat_SeqBAIJ *baij = (Mat_SeqBAIJ*)mat->data;
2272bdb1c0e1SJed Brown   PetscInt    i,nz,mbs;
227327a8da17SBarry Smith 
227427a8da17SBarry Smith   PetscFunctionBegin;
2275b32cb4a7SJed Brown   nz  = baij->maxnz;
2276bdb1c0e1SJed Brown   mbs = baij->mbs;
227727a8da17SBarry Smith   for (i=0; i<nz; i++) {
227827a8da17SBarry Smith     baij->j[i] = indices[i];
227927a8da17SBarry Smith   }
228027a8da17SBarry Smith   baij->nz = nz;
2281bdb1c0e1SJed Brown   for (i=0; i<mbs; i++) {
228227a8da17SBarry Smith     baij->ilen[i] = baij->imax[i];
228327a8da17SBarry Smith   }
228427a8da17SBarry Smith   PetscFunctionReturn(0);
228527a8da17SBarry Smith }
228627a8da17SBarry Smith 
22874a2ae208SSatish Balay #undef __FUNCT__
22884a2ae208SSatish Balay #define __FUNCT__ "MatSeqBAIJSetColumnIndices"
228927a8da17SBarry Smith /*@
229027a8da17SBarry Smith     MatSeqBAIJSetColumnIndices - Set the column indices for all the rows
229127a8da17SBarry Smith        in the matrix.
229227a8da17SBarry Smith 
229327a8da17SBarry Smith   Input Parameters:
229427a8da17SBarry Smith +  mat - the SeqBAIJ matrix
229527a8da17SBarry Smith -  indices - the column indices
229627a8da17SBarry Smith 
229715091d37SBarry Smith   Level: advanced
229815091d37SBarry Smith 
229927a8da17SBarry Smith   Notes:
230027a8da17SBarry Smith     This can be called if you have precomputed the nonzero structure of the
230127a8da17SBarry Smith   matrix and want to provide it to the matrix object to improve the performance
230227a8da17SBarry Smith   of the MatSetValues() operation.
230327a8da17SBarry Smith 
230427a8da17SBarry Smith     You MUST have set the correct numbers of nonzeros per row in the call to
2305d1be2dadSMatthew Knepley   MatCreateSeqBAIJ(), and the columns indices MUST be sorted.
230627a8da17SBarry Smith 
230727a8da17SBarry Smith     MUST be called before any calls to MatSetValues();
230827a8da17SBarry Smith 
230927a8da17SBarry Smith @*/
23107087cfbeSBarry Smith PetscErrorCode  MatSeqBAIJSetColumnIndices(Mat mat,PetscInt *indices)
231127a8da17SBarry Smith {
23124ac538c5SBarry Smith   PetscErrorCode ierr;
231327a8da17SBarry Smith 
231427a8da17SBarry Smith   PetscFunctionBegin;
23150700a824SBarry Smith   PetscValidHeaderSpecific(mat,MAT_CLASSID,1);
23164482741eSBarry Smith   PetscValidPointer(indices,2);
23174ac538c5SBarry Smith   ierr = PetscUseMethod(mat,"MatSeqBAIJSetColumnIndices_C",(Mat,PetscInt*),(mat,indices));CHKERRQ(ierr);
231827a8da17SBarry Smith   PetscFunctionReturn(0);
231927a8da17SBarry Smith }
232027a8da17SBarry Smith 
23214a2ae208SSatish Balay #undef __FUNCT__
2322985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_SeqBAIJ"
2323985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_SeqBAIJ(Mat A,Vec v,PetscInt idx[])
2324273d9f13SBarry Smith {
2325273d9f13SBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
2326dfbe8321SBarry Smith   PetscErrorCode ierr;
2327c1ac3661SBarry Smith   PetscInt       i,j,n,row,bs,*ai,*aj,mbs;
2328273d9f13SBarry Smith   PetscReal      atmp;
232987828ca2SBarry Smith   PetscScalar    *x,zero = 0.0;
2330273d9f13SBarry Smith   MatScalar      *aa;
2331c1ac3661SBarry Smith   PetscInt       ncols,brow,krow,kcol;
2332273d9f13SBarry Smith 
2333273d9f13SBarry Smith   PetscFunctionBegin;
2334e32f2f54SBarry Smith   if (A->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
2335d0f46423SBarry Smith   bs  = A->rmap->bs;
2336273d9f13SBarry Smith   aa  = a->a;
2337273d9f13SBarry Smith   ai  = a->i;
2338273d9f13SBarry Smith   aj  = a->j;
2339273d9f13SBarry Smith   mbs = a->mbs;
2340273d9f13SBarry Smith 
23412dcb1b2aSMatthew Knepley   ierr = VecSet(v,zero);CHKERRQ(ierr);
23421ebc52fbSHong Zhang   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
2343273d9f13SBarry Smith   ierr = VecGetLocalSize(v,&n);CHKERRQ(ierr);
2344e32f2f54SBarry Smith   if (n != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector");
2345273d9f13SBarry Smith   for (i=0; i<mbs; i++) {
2346273d9f13SBarry Smith     ncols = ai[1] - ai[0]; ai++;
2347273d9f13SBarry Smith     brow  = bs*i;
2348273d9f13SBarry Smith     for (j=0; j<ncols; j++) {
2349273d9f13SBarry Smith       for (kcol=0; kcol<bs; kcol++) {
2350273d9f13SBarry Smith         for (krow=0; krow<bs; krow++) {
2351273d9f13SBarry Smith           atmp = PetscAbsScalar(*aa);aa++;
2352273d9f13SBarry Smith           row  = brow + krow;   /* row index */
2353985db425SBarry Smith           if (PetscAbsScalar(x[row]) < atmp) {x[row] = atmp; if (idx) idx[row] = bs*(*aj) + kcol;}
2354273d9f13SBarry Smith         }
2355273d9f13SBarry Smith       }
2356273d9f13SBarry Smith       aj++;
2357273d9f13SBarry Smith     }
2358273d9f13SBarry Smith   }
23591ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
2360273d9f13SBarry Smith   PetscFunctionReturn(0);
2361273d9f13SBarry Smith }
2362273d9f13SBarry Smith 
23634a2ae208SSatish Balay #undef __FUNCT__
23643c896bc6SHong Zhang #define __FUNCT__ "MatCopy_SeqBAIJ"
23653c896bc6SHong Zhang PetscErrorCode MatCopy_SeqBAIJ(Mat A,Mat B,MatStructure str)
23663c896bc6SHong Zhang {
23673c896bc6SHong Zhang   PetscErrorCode ierr;
23683c896bc6SHong Zhang 
23693c896bc6SHong Zhang   PetscFunctionBegin;
23703c896bc6SHong Zhang   /* If the two matrices have the same copy implementation, use fast copy. */
23713c896bc6SHong Zhang   if (str == SAME_NONZERO_PATTERN && (A->ops->copy == B->ops->copy)) {
23723c896bc6SHong Zhang     Mat_SeqBAIJ *a  = (Mat_SeqBAIJ*)A->data;
23733c896bc6SHong Zhang     Mat_SeqBAIJ *b  = (Mat_SeqBAIJ*)B->data;
2374d88c0aacSHong Zhang     PetscInt    ambs=a->mbs,bmbs=b->mbs,abs=A->rmap->bs,bbs=B->rmap->bs,bs2=abs*abs;
23753c896bc6SHong Zhang 
2376d88c0aacSHong Zhang     if (a->i[ambs] != b->i[bmbs]) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Number of nonzero blocks in matrices A %D and B %D are different",a->i[ambs],b->i[bmbs]);
2377d88c0aacSHong Zhang     if (abs != bbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Block size A %D and B %D are different",abs,bbs);
2378d88c0aacSHong Zhang     ierr = PetscMemcpy(b->a,a->a,(bs2*a->i[ambs])*sizeof(PetscScalar));CHKERRQ(ierr);
23793c896bc6SHong Zhang   } else {
23803c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
23813c896bc6SHong Zhang   }
23823c896bc6SHong Zhang   PetscFunctionReturn(0);
23833c896bc6SHong Zhang }
23843c896bc6SHong Zhang 
23853c896bc6SHong Zhang #undef __FUNCT__
23864994cf47SJed Brown #define __FUNCT__ "MatSetUp_SeqBAIJ"
23874994cf47SJed Brown PetscErrorCode MatSetUp_SeqBAIJ(Mat A)
2388273d9f13SBarry Smith {
2389dfbe8321SBarry Smith   PetscErrorCode ierr;
2390273d9f13SBarry Smith 
2391273d9f13SBarry Smith   PetscFunctionBegin;
2392535b19f3SBarry Smith   ierr = MatSeqBAIJSetPreallocation_SeqBAIJ(A,A->rmap->bs,PETSC_DEFAULT,0);CHKERRQ(ierr);
2393273d9f13SBarry Smith   PetscFunctionReturn(0);
2394273d9f13SBarry Smith }
2395273d9f13SBarry Smith 
23964a2ae208SSatish Balay #undef __FUNCT__
23978c778c55SBarry Smith #define __FUNCT__ "MatSeqBAIJGetArray_SeqBAIJ"
23988c778c55SBarry Smith PetscErrorCode MatSeqBAIJGetArray_SeqBAIJ(Mat A,PetscScalar *array[])
2399f2a5309cSSatish Balay {
2400f2a5309cSSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data;
24016e111a19SKarl Rupp 
2402f2a5309cSSatish Balay   PetscFunctionBegin;
2403f2a5309cSSatish Balay   *array = a->a;
2404f2a5309cSSatish Balay   PetscFunctionReturn(0);
2405f2a5309cSSatish Balay }
2406f2a5309cSSatish Balay 
24074a2ae208SSatish Balay #undef __FUNCT__
24088c778c55SBarry Smith #define __FUNCT__ "MatSeqBAIJRestoreArray_SeqBAIJ"
24098c778c55SBarry Smith PetscErrorCode MatSeqBAIJRestoreArray_SeqBAIJ(Mat A,PetscScalar *array[])
2410f2a5309cSSatish Balay {
2411f2a5309cSSatish Balay   PetscFunctionBegin;
2412f2a5309cSSatish Balay   PetscFunctionReturn(0);
2413f2a5309cSSatish Balay }
2414f2a5309cSSatish Balay 
241542ee4b1aSHong Zhang #undef __FUNCT__
241652768537SHong Zhang #define __FUNCT__ "MatAXPYGetPreallocation_SeqBAIJ"
241752768537SHong Zhang PetscErrorCode MatAXPYGetPreallocation_SeqBAIJ(Mat Y,Mat X,PetscInt *nnz)
241852768537SHong Zhang {
2419b264fe52SHong Zhang   PetscInt       bs = Y->rmap->bs,mbs = Y->rmap->N/bs;
242052768537SHong Zhang   Mat_SeqBAIJ    *x = (Mat_SeqBAIJ*)X->data;
242152768537SHong Zhang   Mat_SeqBAIJ    *y = (Mat_SeqBAIJ*)Y->data;
2422b264fe52SHong Zhang   PetscErrorCode ierr;
242352768537SHong Zhang 
242452768537SHong Zhang   PetscFunctionBegin;
242552768537SHong Zhang   /* Set the number of nonzeros in the new matrix */
2426b264fe52SHong Zhang   ierr = MatAXPYGetPreallocation_SeqX_private(mbs,x->i,x->j,y->i,y->j,nnz);CHKERRQ(ierr);
242752768537SHong Zhang   PetscFunctionReturn(0);
242852768537SHong Zhang }
242952768537SHong Zhang 
243052768537SHong Zhang #undef __FUNCT__
243142ee4b1aSHong Zhang #define __FUNCT__ "MatAXPY_SeqBAIJ"
2432f4df32b1SMatthew Knepley PetscErrorCode MatAXPY_SeqBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
243342ee4b1aSHong Zhang {
243442ee4b1aSHong Zhang   Mat_SeqBAIJ    *x = (Mat_SeqBAIJ*)X->data,*y = (Mat_SeqBAIJ*)Y->data;
2435dfbe8321SBarry Smith   PetscErrorCode ierr;
243631ce2d13SHong Zhang   PetscInt       bs=Y->rmap->bs,bs2=bs*bs;
2437e838b9e7SJed Brown   PetscBLASInt   one=1;
243842ee4b1aSHong Zhang 
243942ee4b1aSHong Zhang   PetscFunctionBegin;
244042ee4b1aSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
2441f4df32b1SMatthew Knepley     PetscScalar  alpha = a;
2442c5df96a5SBarry Smith     PetscBLASInt bnz;
2443c5df96a5SBarry Smith     ierr = PetscBLASIntCast(x->nz*bs2,&bnz);CHKERRQ(ierr);
24448b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one));
2445a3fa217bSJose E. Roman     ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr);
2446ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
2447ab784542SHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
244842ee4b1aSHong Zhang   } else {
244952768537SHong Zhang     Mat      B;
245052768537SHong Zhang     PetscInt *nnz;
245152768537SHong Zhang     if (bs != X->rmap->bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size");
245252768537SHong Zhang     ierr = PetscMalloc1(Y->rmap->N,&nnz);CHKERRQ(ierr);
245352768537SHong Zhang     ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr);
245452768537SHong Zhang     ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr);
245552768537SHong Zhang     ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr);
245652768537SHong Zhang     ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr);
245752768537SHong Zhang     ierr = MatSetType(B,(MatType) ((PetscObject)Y)->type_name);CHKERRQ(ierr);
245852768537SHong Zhang     ierr = MatAXPYGetPreallocation_SeqBAIJ(Y,X,nnz);CHKERRQ(ierr);
245952768537SHong Zhang     ierr = MatSeqBAIJSetPreallocation(B,bs,0,nnz);CHKERRQ(ierr);
246052768537SHong Zhang     ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr);
246128be2f97SBarry Smith     ierr = MatHeaderReplace(Y,&B);CHKERRQ(ierr);
246252768537SHong Zhang     ierr = PetscFree(nnz);CHKERRQ(ierr);
246342ee4b1aSHong Zhang   }
246442ee4b1aSHong Zhang   PetscFunctionReturn(0);
246542ee4b1aSHong Zhang }
246642ee4b1aSHong Zhang 
246799cafbc1SBarry Smith #undef __FUNCT__
246899cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_SeqBAIJ"
246999cafbc1SBarry Smith PetscErrorCode MatRealPart_SeqBAIJ(Mat A)
247099cafbc1SBarry Smith {
247199cafbc1SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data;
247299cafbc1SBarry Smith   PetscInt    i,nz = a->bs2*a->i[a->mbs];
2473dd6ea824SBarry Smith   MatScalar   *aa = a->a;
247499cafbc1SBarry Smith 
247599cafbc1SBarry Smith   PetscFunctionBegin;
247699cafbc1SBarry Smith   for (i=0; i<nz; i++) aa[i] = PetscRealPart(aa[i]);
247799cafbc1SBarry Smith   PetscFunctionReturn(0);
247899cafbc1SBarry Smith }
247999cafbc1SBarry Smith 
248099cafbc1SBarry Smith #undef __FUNCT__
248199cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_SeqBAIJ"
248299cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_SeqBAIJ(Mat A)
248399cafbc1SBarry Smith {
248499cafbc1SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data;
248599cafbc1SBarry Smith   PetscInt    i,nz = a->bs2*a->i[a->mbs];
2486dd6ea824SBarry Smith   MatScalar   *aa = a->a;
248799cafbc1SBarry Smith 
248899cafbc1SBarry Smith   PetscFunctionBegin;
248999cafbc1SBarry Smith   for (i=0; i<nz; i++) aa[i] = PetscImaginaryPart(aa[i]);
249099cafbc1SBarry Smith   PetscFunctionReturn(0);
249199cafbc1SBarry Smith }
249299cafbc1SBarry Smith 
24933acb8795SBarry Smith #undef __FUNCT__
24943acb8795SBarry Smith #define __FUNCT__ "MatGetColumnIJ_SeqBAIJ"
24953acb8795SBarry Smith /*
24963acb8795SBarry Smith     Code almost idential to MatGetColumnIJ_SeqAIJ() should share common code
24973acb8795SBarry Smith */
24981a83f524SJed Brown PetscErrorCode MatGetColumnIJ_SeqBAIJ(Mat A,PetscInt oshift,PetscBool symmetric,PetscBool inodecompressed,PetscInt *nn,const PetscInt *ia[],const PetscInt *ja[],PetscBool  *done)
24993acb8795SBarry Smith {
25003acb8795SBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
25013acb8795SBarry Smith   PetscErrorCode ierr;
25023acb8795SBarry Smith   PetscInt       bs = A->rmap->bs,i,*collengths,*cia,*cja,n = A->cmap->n/bs,m = A->rmap->n/bs;
25033acb8795SBarry Smith   PetscInt       nz = a->i[m],row,*jj,mr,col;
25043acb8795SBarry Smith 
25053acb8795SBarry Smith   PetscFunctionBegin;
25063acb8795SBarry Smith   *nn = n;
25073acb8795SBarry Smith   if (!ia) PetscFunctionReturn(0);
2508e7e72b3dSBarry Smith   if (symmetric) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Not for BAIJ matrices");
2509e7e72b3dSBarry Smith   else {
2510854ce69bSBarry Smith     ierr = PetscCalloc1(n+1,&collengths);CHKERRQ(ierr);
2511854ce69bSBarry Smith     ierr = PetscMalloc1(n+1,&cia);CHKERRQ(ierr);
2512854ce69bSBarry Smith     ierr = PetscMalloc1(nz+1,&cja);CHKERRQ(ierr);
25133acb8795SBarry Smith     jj   = a->j;
25143acb8795SBarry Smith     for (i=0; i<nz; i++) {
25153acb8795SBarry Smith       collengths[jj[i]]++;
25163acb8795SBarry Smith     }
25173acb8795SBarry Smith     cia[0] = oshift;
25183acb8795SBarry Smith     for (i=0; i<n; i++) {
25193acb8795SBarry Smith       cia[i+1] = cia[i] + collengths[i];
25203acb8795SBarry Smith     }
25213acb8795SBarry Smith     ierr = PetscMemzero(collengths,n*sizeof(PetscInt));CHKERRQ(ierr);
25223acb8795SBarry Smith     jj   = a->j;
25233acb8795SBarry Smith     for (row=0; row<m; row++) {
25243acb8795SBarry Smith       mr = a->i[row+1] - a->i[row];
25253acb8795SBarry Smith       for (i=0; i<mr; i++) {
25263acb8795SBarry Smith         col = *jj++;
252726fbe8dcSKarl Rupp 
25283acb8795SBarry Smith         cja[cia[col] + collengths[col]++ - oshift] = row + oshift;
25293acb8795SBarry Smith       }
25303acb8795SBarry Smith     }
25313acb8795SBarry Smith     ierr = PetscFree(collengths);CHKERRQ(ierr);
25323acb8795SBarry Smith     *ia  = cia; *ja = cja;
25333acb8795SBarry Smith   }
25343acb8795SBarry Smith   PetscFunctionReturn(0);
25353acb8795SBarry Smith }
25363acb8795SBarry Smith 
25373acb8795SBarry Smith #undef __FUNCT__
25383acb8795SBarry Smith #define __FUNCT__ "MatRestoreColumnIJ_SeqBAIJ"
25391a83f524SJed Brown PetscErrorCode MatRestoreColumnIJ_SeqBAIJ(Mat A,PetscInt oshift,PetscBool symmetric,PetscBool inodecompressed,PetscInt *n,const PetscInt *ia[],const PetscInt *ja[],PetscBool  *done)
25403acb8795SBarry Smith {
25413acb8795SBarry Smith   PetscErrorCode ierr;
25423acb8795SBarry Smith 
25433acb8795SBarry Smith   PetscFunctionBegin;
25443acb8795SBarry Smith   if (!ia) PetscFunctionReturn(0);
25453acb8795SBarry Smith   ierr = PetscFree(*ia);CHKERRQ(ierr);
25463acb8795SBarry Smith   ierr = PetscFree(*ja);CHKERRQ(ierr);
25473acb8795SBarry Smith   PetscFunctionReturn(0);
25483acb8795SBarry Smith }
25493acb8795SBarry Smith 
2550525d23c0SHong Zhang /*
2551525d23c0SHong Zhang  MatGetColumnIJ_SeqBAIJ_Color() and MatRestoreColumnIJ_SeqBAIJ_Color() are customized from
2552525d23c0SHong Zhang  MatGetColumnIJ_SeqBAIJ() and MatRestoreColumnIJ_SeqBAIJ() by adding an output
2553040ebd07SHong Zhang  spidx[], index of a->a, to be used in MatTransposeColoringCreate() and MatFDColoringCreate()
2554525d23c0SHong Zhang  */
2555f6d58c54SBarry Smith #undef __FUNCT__
2556525d23c0SHong Zhang #define __FUNCT__ "MatGetColumnIJ_SeqBAIJ_Color"
2557525d23c0SHong Zhang PetscErrorCode MatGetColumnIJ_SeqBAIJ_Color(Mat A,PetscInt oshift,PetscBool symmetric,PetscBool inodecompressed,PetscInt *nn,const PetscInt *ia[],const PetscInt *ja[],PetscInt *spidx[],PetscBool  *done)
2558f6d58c54SBarry Smith {
2559525d23c0SHong Zhang   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
2560f6d58c54SBarry Smith   PetscErrorCode ierr;
2561c0349474SHong Zhang   PetscInt       i,*collengths,*cia,*cja,n=a->nbs,m=a->mbs;
2562525d23c0SHong Zhang   PetscInt       nz = a->i[m],row,*jj,mr,col;
2563525d23c0SHong Zhang   PetscInt       *cspidx;
2564f6d58c54SBarry Smith 
2565f6d58c54SBarry Smith   PetscFunctionBegin;
2566525d23c0SHong Zhang   *nn = n;
2567525d23c0SHong Zhang   if (!ia) PetscFunctionReturn(0);
2568f6d58c54SBarry Smith 
2569854ce69bSBarry Smith   ierr = PetscCalloc1(n+1,&collengths);CHKERRQ(ierr);
2570854ce69bSBarry Smith   ierr = PetscMalloc1(n+1,&cia);CHKERRQ(ierr);
2571854ce69bSBarry Smith   ierr = PetscMalloc1(nz+1,&cja);CHKERRQ(ierr);
2572854ce69bSBarry Smith   ierr = PetscMalloc1(nz+1,&cspidx);CHKERRQ(ierr);
2573525d23c0SHong Zhang   jj   = a->j;
2574525d23c0SHong Zhang   for (i=0; i<nz; i++) {
2575525d23c0SHong Zhang     collengths[jj[i]]++;
2576f6d58c54SBarry Smith   }
2577525d23c0SHong Zhang   cia[0] = oshift;
2578525d23c0SHong Zhang   for (i=0; i<n; i++) {
2579525d23c0SHong Zhang     cia[i+1] = cia[i] + collengths[i];
2580525d23c0SHong Zhang   }
2581525d23c0SHong Zhang   ierr = PetscMemzero(collengths,n*sizeof(PetscInt));CHKERRQ(ierr);
2582525d23c0SHong Zhang   jj   = a->j;
2583525d23c0SHong Zhang   for (row=0; row<m; row++) {
2584525d23c0SHong Zhang     mr = a->i[row+1] - a->i[row];
2585525d23c0SHong Zhang     for (i=0; i<mr; i++) {
2586525d23c0SHong Zhang       col = *jj++;
2587525d23c0SHong Zhang       cspidx[cia[col] + collengths[col] - oshift] = a->i[row] + i; /* index of a->j */
2588525d23c0SHong Zhang       cja[cia[col] + collengths[col]++ - oshift]  = row + oshift;
2589525d23c0SHong Zhang     }
2590525d23c0SHong Zhang   }
2591525d23c0SHong Zhang   ierr   = PetscFree(collengths);CHKERRQ(ierr);
2592525d23c0SHong Zhang   *ia    = cia; *ja = cja;
2593525d23c0SHong Zhang   *spidx = cspidx;
2594525d23c0SHong Zhang   PetscFunctionReturn(0);
2595f6d58c54SBarry Smith }
2596f6d58c54SBarry Smith 
2597525d23c0SHong Zhang #undef __FUNCT__
2598525d23c0SHong Zhang #define __FUNCT__ "MatRestoreColumnIJ_SeqBAIJ_Color"
2599525d23c0SHong Zhang PetscErrorCode MatRestoreColumnIJ_SeqBAIJ_Color(Mat A,PetscInt oshift,PetscBool symmetric,PetscBool inodecompressed,PetscInt *n,const PetscInt *ia[],const PetscInt *ja[],PetscInt *spidx[],PetscBool  *done)
2600525d23c0SHong Zhang {
2601525d23c0SHong Zhang   PetscErrorCode ierr;
2602f6d58c54SBarry Smith 
2603525d23c0SHong Zhang   PetscFunctionBegin;
2604525d23c0SHong Zhang   ierr = MatRestoreColumnIJ_SeqBAIJ(A,oshift,symmetric,inodecompressed,n,ia,ja,done);CHKERRQ(ierr);
2605525d23c0SHong Zhang   ierr = PetscFree(*spidx);CHKERRQ(ierr);
2606f6d58c54SBarry Smith   PetscFunctionReturn(0);
2607f6d58c54SBarry Smith }
260899cafbc1SBarry Smith 
26097d68702bSBarry Smith #undef __FUNCT__
26107d68702bSBarry Smith #define __FUNCT__ "MatShift_SeqBAIJ"
26117d68702bSBarry Smith PetscErrorCode MatShift_SeqBAIJ(Mat Y,PetscScalar a)
26127d68702bSBarry Smith {
26137d68702bSBarry Smith   PetscErrorCode ierr;
26147d68702bSBarry Smith   Mat_SeqBAIJ     *aij = (Mat_SeqBAIJ*)Y->data;
26157d68702bSBarry Smith 
26167d68702bSBarry Smith   PetscFunctionBegin;
26176f33a894SBarry Smith   if (!Y->preallocated || !aij->nz) {
26187d68702bSBarry Smith     ierr = MatSeqBAIJSetPreallocation(Y,Y->rmap->bs,1,NULL);CHKERRQ(ierr);
26197d68702bSBarry Smith   }
26207d68702bSBarry Smith   ierr = MatShift_Basic(Y,a);CHKERRQ(ierr);
26217d68702bSBarry Smith   PetscFunctionReturn(0);
26227d68702bSBarry Smith }
26237d68702bSBarry Smith 
26242593348eSBarry Smith /* -------------------------------------------------------------------*/
26253964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_SeqBAIJ,
2626cc2dc46cSBarry Smith                                        MatGetRow_SeqBAIJ,
2627cc2dc46cSBarry Smith                                        MatRestoreRow_SeqBAIJ,
2628cc2dc46cSBarry Smith                                        MatMult_SeqBAIJ_N,
262997304618SKris Buschelman                                /* 4*/  MatMultAdd_SeqBAIJ_N,
26307c922b88SBarry Smith                                        MatMultTranspose_SeqBAIJ,
26317c922b88SBarry Smith                                        MatMultTransposeAdd_SeqBAIJ,
2632db4efbfdSBarry Smith                                        0,
2633cc2dc46cSBarry Smith                                        0,
2634cc2dc46cSBarry Smith                                        0,
263597304618SKris Buschelman                                /* 10*/ 0,
2636cc2dc46cSBarry Smith                                        MatLUFactor_SeqBAIJ,
2637cc2dc46cSBarry Smith                                        0,
2638b6490206SBarry Smith                                        0,
2639f2501298SSatish Balay                                        MatTranspose_SeqBAIJ,
264097304618SKris Buschelman                                /* 15*/ MatGetInfo_SeqBAIJ,
2641cc2dc46cSBarry Smith                                        MatEqual_SeqBAIJ,
2642cc2dc46cSBarry Smith                                        MatGetDiagonal_SeqBAIJ,
2643cc2dc46cSBarry Smith                                        MatDiagonalScale_SeqBAIJ,
2644cc2dc46cSBarry Smith                                        MatNorm_SeqBAIJ,
264597304618SKris Buschelman                                /* 20*/ 0,
2646cc2dc46cSBarry Smith                                        MatAssemblyEnd_SeqBAIJ,
2647cc2dc46cSBarry Smith                                        MatSetOption_SeqBAIJ,
2648cc2dc46cSBarry Smith                                        MatZeroEntries_SeqBAIJ,
2649d519adbfSMatthew Knepley                                /* 24*/ MatZeroRows_SeqBAIJ,
2650db4efbfdSBarry Smith                                        0,
2651db4efbfdSBarry Smith                                        0,
2652db4efbfdSBarry Smith                                        0,
2653db4efbfdSBarry Smith                                        0,
26544994cf47SJed Brown                                /* 29*/ MatSetUp_SeqBAIJ,
2655db4efbfdSBarry Smith                                        0,
2656db4efbfdSBarry Smith                                        0,
26578c778c55SBarry Smith                                        0,
26588c778c55SBarry Smith                                        0,
2659d519adbfSMatthew Knepley                                /* 34*/ MatDuplicate_SeqBAIJ,
2660cc2dc46cSBarry Smith                                        0,
2661cc2dc46cSBarry Smith                                        0,
2662cc2dc46cSBarry Smith                                        MatILUFactor_SeqBAIJ,
2663cc2dc46cSBarry Smith                                        0,
2664d519adbfSMatthew Knepley                                /* 39*/ MatAXPY_SeqBAIJ,
2665cc2dc46cSBarry Smith                                        MatGetSubMatrices_SeqBAIJ,
2666cc2dc46cSBarry Smith                                        MatIncreaseOverlap_SeqBAIJ,
2667cc2dc46cSBarry Smith                                        MatGetValues_SeqBAIJ,
26683c896bc6SHong Zhang                                        MatCopy_SeqBAIJ,
2669d519adbfSMatthew Knepley                                /* 44*/ 0,
2670cc2dc46cSBarry Smith                                        MatScale_SeqBAIJ,
26717d68702bSBarry Smith                                        MatShift_SeqBAIJ,
2672cc2dc46cSBarry Smith                                        0,
267397b48c8fSBarry Smith                                        MatZeroRowsColumns_SeqBAIJ,
2674f73d5cc4SBarry Smith                                /* 49*/ 0,
26753b2fbd54SBarry Smith                                        MatGetRowIJ_SeqBAIJ,
267692c4ed94SBarry Smith                                        MatRestoreRowIJ_SeqBAIJ,
26773acb8795SBarry Smith                                        MatGetColumnIJ_SeqBAIJ,
26783acb8795SBarry Smith                                        MatRestoreColumnIJ_SeqBAIJ,
267993dfae19SHong Zhang                                /* 54*/ MatFDColoringCreate_SeqXAIJ,
2680cc2dc46cSBarry Smith                                        0,
2681cc2dc46cSBarry Smith                                        0,
2682cc2dc46cSBarry Smith                                        0,
2683d3825aa8SBarry Smith                                        MatSetValuesBlocked_SeqBAIJ,
2684d519adbfSMatthew Knepley                                /* 59*/ MatGetSubMatrix_SeqBAIJ,
2685b9b97703SBarry Smith                                        MatDestroy_SeqBAIJ,
2686b9b97703SBarry Smith                                        MatView_SeqBAIJ,
2687357abbc8SBarry Smith                                        0,
2688273d9f13SBarry Smith                                        0,
2689d519adbfSMatthew Knepley                                /* 64*/ 0,
2690273d9f13SBarry Smith                                        0,
2691273d9f13SBarry Smith                                        0,
2692273d9f13SBarry Smith                                        0,
2693273d9f13SBarry Smith                                        0,
2694d519adbfSMatthew Knepley                                /* 69*/ MatGetRowMaxAbs_SeqBAIJ,
2695273d9f13SBarry Smith                                        0,
2696c87e5d42SMatthew Knepley                                        MatConvert_Basic,
269797304618SKris Buschelman                                        0,
269897304618SKris Buschelman                                        0,
2699d519adbfSMatthew Knepley                                /* 74*/ 0,
2700f6d58c54SBarry Smith                                        MatFDColoringApply_BAIJ,
270197304618SKris Buschelman                                        0,
270297304618SKris Buschelman                                        0,
270397304618SKris Buschelman                                        0,
2704d519adbfSMatthew Knepley                                /* 79*/ 0,
270597304618SKris Buschelman                                        0,
270697304618SKris Buschelman                                        0,
270797304618SKris Buschelman                                        0,
27085bba2384SShri Abhyankar                                        MatLoad_SeqBAIJ,
2709d519adbfSMatthew Knepley                                /* 84*/ 0,
2710b01c7715SBarry Smith                                        0,
2711b01c7715SBarry Smith                                        0,
2712b01c7715SBarry Smith                                        0,
2713865e5f61SKris Buschelman                                        0,
2714d519adbfSMatthew Knepley                                /* 89*/ 0,
2715865e5f61SKris Buschelman                                        0,
2716865e5f61SKris Buschelman                                        0,
2717865e5f61SKris Buschelman                                        0,
2718865e5f61SKris Buschelman                                        0,
2719d519adbfSMatthew Knepley                                /* 94*/ 0,
2720865e5f61SKris Buschelman                                        0,
2721865e5f61SKris Buschelman                                        0,
272299cafbc1SBarry Smith                                        0,
272399cafbc1SBarry Smith                                        0,
2724d519adbfSMatthew Knepley                                /* 99*/ 0,
272599cafbc1SBarry Smith                                        0,
272699cafbc1SBarry Smith                                        0,
272799cafbc1SBarry Smith                                        0,
272899cafbc1SBarry Smith                                        0,
2729d519adbfSMatthew Knepley                                /*104*/ 0,
273099cafbc1SBarry Smith                                        MatRealPart_SeqBAIJ,
27312af78befSBarry Smith                                        MatImaginaryPart_SeqBAIJ,
27322af78befSBarry Smith                                        0,
27332af78befSBarry Smith                                        0,
2734d519adbfSMatthew Knepley                                /*109*/ 0,
27352af78befSBarry Smith                                        0,
27362af78befSBarry Smith                                        0,
27372af78befSBarry Smith                                        0,
2738547795f9SHong Zhang                                        MatMissingDiagonal_SeqBAIJ,
2739547795f9SHong Zhang                                /*114*/ 0,
2740547795f9SHong Zhang                                        0,
2741547795f9SHong Zhang                                        0,
2742547795f9SHong Zhang                                        0,
2743547795f9SHong Zhang                                        0,
2744547795f9SHong Zhang                                /*119*/ 0,
2745547795f9SHong Zhang                                        0,
2746547795f9SHong Zhang                                        MatMultHermitianTranspose_SeqBAIJ,
2747d6037b41SHong Zhang                                        MatMultHermitianTransposeAdd_SeqBAIJ,
2748d6037b41SHong Zhang                                        0,
2749bbead8a2SBarry Smith                                /*124*/ 0,
2750bbead8a2SBarry Smith                                        0,
27513964eb88SJed Brown                                        MatInvertBlockDiagonal_SeqBAIJ,
27523964eb88SJed Brown                                        0,
27533964eb88SJed Brown                                        0,
27543964eb88SJed Brown                                /*129*/ 0,
27553964eb88SJed Brown                                        0,
27563964eb88SJed Brown                                        0,
27573964eb88SJed Brown                                        0,
27583964eb88SJed Brown                                        0,
27593964eb88SJed Brown                                /*134*/ 0,
27603964eb88SJed Brown                                        0,
27613964eb88SJed Brown                                        0,
27623964eb88SJed Brown                                        0,
27633964eb88SJed Brown                                        0,
27643964eb88SJed Brown                                /*139*/ 0,
2765f9426fe0SMark Adams                                        0,
27661919a2e2SJed Brown                                        0,
2767bdf6f3fcSHong Zhang                                        MatFDColoringSetUp_SeqXAIJ,
2768bdf6f3fcSHong Zhang                                        0,
2769bdf6f3fcSHong Zhang                                 /*144*/MatCreateMPIMatConcatenateSeqMat_SeqBAIJ
277099cafbc1SBarry Smith };
27712593348eSBarry Smith 
27724a2ae208SSatish Balay #undef __FUNCT__
27734a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_SeqBAIJ"
27747087cfbeSBarry Smith PetscErrorCode  MatStoreValues_SeqBAIJ(Mat mat)
27753e90b805SBarry Smith {
27763e90b805SBarry Smith   Mat_SeqBAIJ    *aij = (Mat_SeqBAIJ*)mat->data;
27778ece6314SShri Abhyankar   PetscInt       nz   = aij->i[aij->mbs]*aij->bs2;
2778dfbe8321SBarry Smith   PetscErrorCode ierr;
27793e90b805SBarry Smith 
27803e90b805SBarry Smith   PetscFunctionBegin;
2781e7e72b3dSBarry Smith   if (aij->nonew != 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first");
27823e90b805SBarry Smith 
27833e90b805SBarry Smith   /* allocate space for values if not already there */
27843e90b805SBarry Smith   if (!aij->saved_values) {
2785854ce69bSBarry Smith     ierr = PetscMalloc1(nz+1,&aij->saved_values);CHKERRQ(ierr);
27863bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,(nz+1)*sizeof(PetscScalar));CHKERRQ(ierr);
27873e90b805SBarry Smith   }
27883e90b805SBarry Smith 
27893e90b805SBarry Smith   /* copy values over */
279087828ca2SBarry Smith   ierr = PetscMemcpy(aij->saved_values,aij->a,nz*sizeof(PetscScalar));CHKERRQ(ierr);
27913e90b805SBarry Smith   PetscFunctionReturn(0);
27923e90b805SBarry Smith }
27933e90b805SBarry Smith 
27944a2ae208SSatish Balay #undef __FUNCT__
27954a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_SeqBAIJ"
27967087cfbeSBarry Smith PetscErrorCode  MatRetrieveValues_SeqBAIJ(Mat mat)
27973e90b805SBarry Smith {
27983e90b805SBarry Smith   Mat_SeqBAIJ    *aij = (Mat_SeqBAIJ*)mat->data;
27996849ba73SBarry Smith   PetscErrorCode ierr;
28008ece6314SShri Abhyankar   PetscInt       nz = aij->i[aij->mbs]*aij->bs2;
28013e90b805SBarry Smith 
28023e90b805SBarry Smith   PetscFunctionBegin;
2803e7e72b3dSBarry Smith   if (aij->nonew != 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first");
2804e7e72b3dSBarry Smith   if (!aij->saved_values) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatStoreValues(A);first");
28053e90b805SBarry Smith 
28063e90b805SBarry Smith   /* copy values over */
280787828ca2SBarry Smith   ierr = PetscMemcpy(aij->a,aij->saved_values,nz*sizeof(PetscScalar));CHKERRQ(ierr);
28083e90b805SBarry Smith   PetscFunctionReturn(0);
28093e90b805SBarry Smith }
28103e90b805SBarry Smith 
28118cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_SeqBAIJ_SeqAIJ(Mat, MatType,MatReuse,Mat*);
28128cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_SeqBAIJ_SeqSBAIJ(Mat, MatType,MatReuse,Mat*);
2813273d9f13SBarry Smith 
28144a2ae208SSatish Balay #undef __FUNCT__
2815a23d5eceSKris Buschelman #define __FUNCT__ "MatSeqBAIJSetPreallocation_SeqBAIJ"
28167087cfbeSBarry Smith PetscErrorCode  MatSeqBAIJSetPreallocation_SeqBAIJ(Mat B,PetscInt bs,PetscInt nz,PetscInt *nnz)
2817a23d5eceSKris Buschelman {
2818a23d5eceSKris Buschelman   Mat_SeqBAIJ    *b;
28196849ba73SBarry Smith   PetscErrorCode ierr;
2820535b19f3SBarry Smith   PetscInt       i,mbs,nbs,bs2;
28218afaa268SBarry Smith   PetscBool      flg = PETSC_FALSE,skipallocation = PETSC_FALSE,realalloc = PETSC_FALSE;
2822a23d5eceSKris Buschelman 
2823a23d5eceSKris Buschelman   PetscFunctionBegin;
28242576faa2SJed Brown   if (nz >= 0 || nnz) realalloc = PETSC_TRUE;
2825ab93d7beSBarry Smith   if (nz == MAT_SKIP_ALLOCATION) {
2826ab93d7beSBarry Smith     skipallocation = PETSC_TRUE;
2827ab93d7beSBarry Smith     nz             = 0;
2828ab93d7beSBarry Smith   }
28298c07d4e3SBarry Smith 
283033d57670SJed Brown   ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr);
283126283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
283226283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
2833e02043d6SBarry Smith   ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
2834899cda47SBarry Smith 
2835899cda47SBarry Smith   B->preallocated = PETSC_TRUE;
2836899cda47SBarry Smith 
2837d0f46423SBarry Smith   mbs = B->rmap->n/bs;
2838d0f46423SBarry Smith   nbs = B->cmap->n/bs;
2839a23d5eceSKris Buschelman   bs2 = bs*bs;
2840a23d5eceSKris Buschelman 
284165e19b50SBarry Smith   if (mbs*bs!=B->rmap->n || nbs*bs!=B->cmap->n) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Number rows %D, cols %D must be divisible by blocksize %D",B->rmap->N,B->cmap->n,bs);
2842a23d5eceSKris Buschelman 
2843a23d5eceSKris Buschelman   if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 5;
2844e32f2f54SBarry Smith   if (nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"nz cannot be less than 0: value %D",nz);
2845a23d5eceSKris Buschelman   if (nnz) {
2846a23d5eceSKris Buschelman     for (i=0; i<mbs; i++) {
2847e32f2f54SBarry Smith       if (nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"nnz cannot be less than 0: local row %D value %D",i,nnz[i]);
2848e32f2f54SBarry Smith       if (nnz[i] > nbs) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"nnz cannot be greater than block row length: local row %D value %D rowlength %D",i,nnz[i],nbs);
2849a23d5eceSKris Buschelman     }
2850a23d5eceSKris Buschelman   }
2851a23d5eceSKris Buschelman 
2852a23d5eceSKris Buschelman   b    = (Mat_SeqBAIJ*)B->data;
2853ce94432eSBarry Smith   ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Optimize options for SEQBAIJ matrix 2 ","Mat");CHKERRQ(ierr);
28548afaa268SBarry Smith   ierr = PetscOptionsBool("-mat_no_unroll","Do not optimize for block size (slow)",NULL,flg,&flg,NULL);CHKERRQ(ierr);
28558c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
28568c07d4e3SBarry Smith 
2857a23d5eceSKris Buschelman   if (!flg) {
2858a23d5eceSKris Buschelman     switch (bs) {
2859a23d5eceSKris Buschelman     case 1:
2860a23d5eceSKris Buschelman       B->ops->mult    = MatMult_SeqBAIJ_1;
2861a23d5eceSKris Buschelman       B->ops->multadd = MatMultAdd_SeqBAIJ_1;
2862a23d5eceSKris Buschelman       break;
2863a23d5eceSKris Buschelman     case 2:
2864a23d5eceSKris Buschelman       B->ops->mult    = MatMult_SeqBAIJ_2;
2865a23d5eceSKris Buschelman       B->ops->multadd = MatMultAdd_SeqBAIJ_2;
2866a23d5eceSKris Buschelman       break;
2867a23d5eceSKris Buschelman     case 3:
2868a23d5eceSKris Buschelman       B->ops->mult    = MatMult_SeqBAIJ_3;
2869a23d5eceSKris Buschelman       B->ops->multadd = MatMultAdd_SeqBAIJ_3;
2870a23d5eceSKris Buschelman       break;
2871a23d5eceSKris Buschelman     case 4:
2872a23d5eceSKris Buschelman       B->ops->mult    = MatMult_SeqBAIJ_4;
2873a23d5eceSKris Buschelman       B->ops->multadd = MatMultAdd_SeqBAIJ_4;
2874a23d5eceSKris Buschelman       break;
2875a23d5eceSKris Buschelman     case 5:
2876a23d5eceSKris Buschelman       B->ops->mult    = MatMult_SeqBAIJ_5;
2877a23d5eceSKris Buschelman       B->ops->multadd = MatMultAdd_SeqBAIJ_5;
2878a23d5eceSKris Buschelman       break;
2879a23d5eceSKris Buschelman     case 6:
2880a23d5eceSKris Buschelman       B->ops->mult    = MatMult_SeqBAIJ_6;
2881a23d5eceSKris Buschelman       B->ops->multadd = MatMultAdd_SeqBAIJ_6;
2882a23d5eceSKris Buschelman       break;
2883a23d5eceSKris Buschelman     case 7:
2884a23d5eceSKris Buschelman       B->ops->mult    = MatMult_SeqBAIJ_7;
2885a23d5eceSKris Buschelman       B->ops->multadd = MatMultAdd_SeqBAIJ_7;
2886a23d5eceSKris Buschelman       break;
28878ab949d8SShri Abhyankar     case 15:
2888832cc040SShri Abhyankar       B->ops->mult    = MatMult_SeqBAIJ_15_ver1;
2889de80f912SBarry Smith       B->ops->multadd = MatMultAdd_SeqBAIJ_N;
28908ab949d8SShri Abhyankar       break;
2891a23d5eceSKris Buschelman     default:
2892a23d5eceSKris Buschelman       B->ops->mult    = MatMult_SeqBAIJ_N;
2893a23d5eceSKris Buschelman       B->ops->multadd = MatMultAdd_SeqBAIJ_N;
2894a23d5eceSKris Buschelman       break;
2895a23d5eceSKris Buschelman     }
2896a23d5eceSKris Buschelman   }
2897e48d15efSToby Isaac   B->ops->sor = MatSOR_SeqBAIJ;
2898a23d5eceSKris Buschelman   b->mbs = mbs;
2899a23d5eceSKris Buschelman   b->nbs = nbs;
2900ab93d7beSBarry Smith   if (!skipallocation) {
29012ee49352SLisandro Dalcin     if (!b->imax) {
2902dcca6d9dSJed Brown       ierr = PetscMalloc2(mbs,&b->imax,mbs,&b->ilen);CHKERRQ(ierr);
29033bb1ff40SBarry Smith       ierr = PetscLogObjectMemory((PetscObject)B,2*mbs*sizeof(PetscInt));CHKERRQ(ierr);
290426fbe8dcSKarl Rupp 
29054fd072dbSBarry Smith       b->free_imax_ilen = PETSC_TRUE;
29062ee49352SLisandro Dalcin     }
2907ab93d7beSBarry Smith     /* b->ilen will count nonzeros in each block row so far. */
290826fbe8dcSKarl Rupp     for (i=0; i<mbs; i++) b->ilen[i] = 0;
2909a23d5eceSKris Buschelman     if (!nnz) {
2910a23d5eceSKris Buschelman       if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 5;
2911c62bd62aSJed Brown       else if (nz < 0) nz = 1;
2912a23d5eceSKris Buschelman       for (i=0; i<mbs; i++) b->imax[i] = nz;
2913a23d5eceSKris Buschelman       nz = nz*mbs;
2914a23d5eceSKris Buschelman     } else {
2915a23d5eceSKris Buschelman       nz = 0;
2916a23d5eceSKris Buschelman       for (i=0; i<mbs; i++) {b->imax[i] = nnz[i]; nz += nnz[i];}
2917a23d5eceSKris Buschelman     }
2918a23d5eceSKris Buschelman 
2919a23d5eceSKris Buschelman     /* allocate the matrix space */
29202ee49352SLisandro Dalcin     ierr = MatSeqXAIJFreeAIJ(B,&b->a,&b->j,&b->i);CHKERRQ(ierr);
2921dcca6d9dSJed Brown     ierr = PetscMalloc3(bs2*nz,&b->a,nz,&b->j,B->rmap->N+1,&b->i);CHKERRQ(ierr);
29223bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)B,(B->rmap->N+1)*sizeof(PetscInt)+nz*(bs2*sizeof(PetscScalar)+sizeof(PetscInt)));CHKERRQ(ierr);
2923a23d5eceSKris Buschelman     ierr = PetscMemzero(b->a,nz*bs2*sizeof(MatScalar));CHKERRQ(ierr);
2924c1ac3661SBarry Smith     ierr = PetscMemzero(b->j,nz*sizeof(PetscInt));CHKERRQ(ierr);
292526fbe8dcSKarl Rupp 
2926a23d5eceSKris Buschelman     b->singlemalloc = PETSC_TRUE;
2927a23d5eceSKris Buschelman     b->i[0]         = 0;
2928a23d5eceSKris Buschelman     for (i=1; i<mbs+1; i++) {
2929a23d5eceSKris Buschelman       b->i[i] = b->i[i-1] + b->imax[i-1];
2930a23d5eceSKris Buschelman     }
2931e6b907acSBarry Smith     b->free_a  = PETSC_TRUE;
2932e6b907acSBarry Smith     b->free_ij = PETSC_TRUE;
2933e811da20SHong Zhang   } else {
2934e6b907acSBarry Smith     b->free_a  = PETSC_FALSE;
2935e6b907acSBarry Smith     b->free_ij = PETSC_FALSE;
2936ab93d7beSBarry Smith   }
2937a23d5eceSKris Buschelman 
2938a23d5eceSKris Buschelman   b->bs2              = bs2;
2939a23d5eceSKris Buschelman   b->mbs              = mbs;
2940a23d5eceSKris Buschelman   b->nz               = 0;
2941b32cb4a7SJed Brown   b->maxnz            = nz;
2942b32cb4a7SJed Brown   B->info.nz_unneeded = (PetscReal)b->maxnz*bs2;
29432576faa2SJed Brown   if (realalloc) {ierr = MatSetOption(B,MAT_NEW_NONZERO_ALLOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);}
2944a23d5eceSKris Buschelman   PetscFunctionReturn(0);
2945a23d5eceSKris Buschelman }
2946a23d5eceSKris Buschelman 
2947725b52f3SLisandro Dalcin #undef __FUNCT__
2948725b52f3SLisandro Dalcin #define __FUNCT__ "MatSeqBAIJSetPreallocationCSR_SeqBAIJ"
2949cf12db73SBarry Smith PetscErrorCode MatSeqBAIJSetPreallocationCSR_SeqBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[])
2950725b52f3SLisandro Dalcin {
2951725b52f3SLisandro Dalcin   PetscInt       i,m,nz,nz_max=0,*nnz;
2952725b52f3SLisandro Dalcin   PetscScalar    *values=0;
2953d47bf9aaSJed Brown   PetscBool      roworiented = ((Mat_SeqBAIJ*)B->data)->roworiented;
2954725b52f3SLisandro Dalcin   PetscErrorCode ierr;
2955725b52f3SLisandro Dalcin 
2956725b52f3SLisandro Dalcin   PetscFunctionBegin;
2957e32f2f54SBarry Smith   if (bs < 1) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs);
295826283091SBarry Smith   ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
295926283091SBarry Smith   ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
296026283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
296126283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
2962e02043d6SBarry Smith   ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
2963d0f46423SBarry Smith   m    = B->rmap->n/bs;
2964725b52f3SLisandro Dalcin 
296526fbe8dcSKarl Rupp   if (ii[0] != 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %D",ii[0]);
2966854ce69bSBarry Smith   ierr = PetscMalloc1(m+1, &nnz);CHKERRQ(ierr);
2967725b52f3SLisandro Dalcin   for (i=0; i<m; i++) {
2968cf12db73SBarry Smith     nz = ii[i+1]- ii[i];
296926fbe8dcSKarl Rupp     if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE, "Local row %D has a negative number of columns %D",i,nz);
2970725b52f3SLisandro Dalcin     nz_max = PetscMax(nz_max, nz);
2971725b52f3SLisandro Dalcin     nnz[i] = nz;
2972725b52f3SLisandro Dalcin   }
2973725b52f3SLisandro Dalcin   ierr = MatSeqBAIJSetPreallocation(B,bs,0,nnz);CHKERRQ(ierr);
2974725b52f3SLisandro Dalcin   ierr = PetscFree(nnz);CHKERRQ(ierr);
2975725b52f3SLisandro Dalcin 
2976725b52f3SLisandro Dalcin   values = (PetscScalar*)V;
2977725b52f3SLisandro Dalcin   if (!values) {
29781795a4d1SJed Brown     ierr = PetscCalloc1(bs*bs*(nz_max+1),&values);CHKERRQ(ierr);
2979725b52f3SLisandro Dalcin   }
2980725b52f3SLisandro Dalcin   for (i=0; i<m; i++) {
2981cf12db73SBarry Smith     PetscInt          ncols  = ii[i+1] - ii[i];
2982cf12db73SBarry Smith     const PetscInt    *icols = jj + ii[i];
2983cf12db73SBarry Smith     const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0);
29843adadaf3SJed Brown     if (!roworiented) {
2985725b52f3SLisandro Dalcin       ierr = MatSetValuesBlocked_SeqBAIJ(B,1,&i,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr);
29863adadaf3SJed Brown     } else {
29873adadaf3SJed Brown       PetscInt j;
29883adadaf3SJed Brown       for (j=0; j<ncols; j++) {
29893adadaf3SJed Brown         const PetscScalar *svals = values + (V ? (bs*bs*(ii[i]+j)) : 0);
2990d47bf9aaSJed Brown         ierr = MatSetValuesBlocked_SeqBAIJ(B,1,&i,1,&icols[j],svals,INSERT_VALUES);CHKERRQ(ierr);
29913adadaf3SJed Brown       }
29923adadaf3SJed Brown     }
2993725b52f3SLisandro Dalcin   }
2994725b52f3SLisandro Dalcin   if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); }
2995725b52f3SLisandro Dalcin   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2996725b52f3SLisandro Dalcin   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
29977827cd58SJed Brown   ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
2998725b52f3SLisandro Dalcin   PetscFunctionReturn(0);
2999725b52f3SLisandro Dalcin }
3000725b52f3SLisandro Dalcin 
30010bad9183SKris Buschelman /*MC
3002fafad747SKris Buschelman    MATSEQBAIJ - MATSEQBAIJ = "seqbaij" - A matrix type to be used for sequential block sparse matrices, based on
30030bad9183SKris Buschelman    block sparse compressed row format.
30040bad9183SKris Buschelman 
30050bad9183SKris Buschelman    Options Database Keys:
30060bad9183SKris Buschelman . -mat_type seqbaij - sets the matrix type to "seqbaij" during a call to MatSetFromOptions()
30070bad9183SKris Buschelman 
30080bad9183SKris Buschelman   Level: beginner
30090bad9183SKris Buschelman 
3010f0c06035SSatish Balay .seealso: MatCreateSeqBAIJ()
30110bad9183SKris Buschelman M*/
30120bad9183SKris Buschelman 
30138cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_SeqBAIJ_SeqBSTRM(Mat, MatType,MatReuse,Mat*);
3014b24902e0SBarry Smith 
3015a23d5eceSKris Buschelman #undef __FUNCT__
30164a2ae208SSatish Balay #define __FUNCT__ "MatCreate_SeqBAIJ"
30178cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_SeqBAIJ(Mat B)
30182593348eSBarry Smith {
3019dfbe8321SBarry Smith   PetscErrorCode ierr;
3020c1ac3661SBarry Smith   PetscMPIInt    size;
3021b6490206SBarry Smith   Mat_SeqBAIJ    *b;
30223b2fbd54SBarry Smith 
30233a40ed3dSBarry Smith   PetscFunctionBegin;
3024ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&size);CHKERRQ(ierr);
3025e32f2f54SBarry Smith   if (size > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Comm must be of size 1");
3026b6490206SBarry Smith 
3027b00a9115SJed Brown   ierr    = PetscNewLog(B,&b);CHKERRQ(ierr);
3028b0a32e0cSBarry Smith   B->data = (void*)b;
3029549d3d68SSatish Balay   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
303026fbe8dcSKarl Rupp 
30312593348eSBarry Smith   b->row          = 0;
30322593348eSBarry Smith   b->col          = 0;
3033e51c0b9cSSatish Balay   b->icol         = 0;
30342593348eSBarry Smith   b->reallocs     = 0;
30353e90b805SBarry Smith   b->saved_values = 0;
30362593348eSBarry Smith 
3037c4992f7dSBarry Smith   b->roworiented        = PETSC_TRUE;
30382593348eSBarry Smith   b->nonew              = 0;
30392593348eSBarry Smith   b->diag               = 0;
30402a1b7f2aSHong Zhang   B->spptr              = 0;
3041b32cb4a7SJed Brown   B->info.nz_unneeded   = (PetscReal)b->maxnz*b->bs2;
3042a9817697SBarry Smith   b->keepnonzeropattern = PETSC_FALSE;
30434e220ebcSLois Curfman McInnes 
3044bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatInvertBlockDiagonal_C",MatInvertBlockDiagonal_SeqBAIJ);CHKERRQ(ierr);
3045bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_SeqBAIJ);CHKERRQ(ierr);
3046bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_SeqBAIJ);CHKERRQ(ierr);
3047bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqBAIJSetColumnIndices_C",MatSeqBAIJSetColumnIndices_SeqBAIJ);CHKERRQ(ierr);
3048bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqbaij_seqaij_C",MatConvert_SeqBAIJ_SeqAIJ);CHKERRQ(ierr);
3049bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqbaij_seqsbaij_C",MatConvert_SeqBAIJ_SeqSBAIJ);CHKERRQ(ierr);
3050bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqBAIJSetPreallocation_C",MatSeqBAIJSetPreallocation_SeqBAIJ);CHKERRQ(ierr);
3051bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatSeqBAIJSetPreallocationCSR_C",MatSeqBAIJSetPreallocationCSR_SeqBAIJ);CHKERRQ(ierr);
3052bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqbaij_seqbstrm_C",MatConvert_SeqBAIJ_SeqBSTRM);CHKERRQ(ierr);
3053bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatIsTranspose_C",MatIsTranspose_SeqBAIJ);CHKERRQ(ierr);
305417667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATSEQBAIJ);CHKERRQ(ierr);
30553a40ed3dSBarry Smith   PetscFunctionReturn(0);
30562593348eSBarry Smith }
30572593348eSBarry Smith 
30584a2ae208SSatish Balay #undef __FUNCT__
3059b24902e0SBarry Smith #define __FUNCT__ "MatDuplicateNoCreate_SeqBAIJ"
3060ace3abfcSBarry Smith PetscErrorCode MatDuplicateNoCreate_SeqBAIJ(Mat C,Mat A,MatDuplicateOption cpvalues,PetscBool mallocmatspace)
30612593348eSBarry Smith {
3062b24902e0SBarry Smith   Mat_SeqBAIJ    *c = (Mat_SeqBAIJ*)C->data,*a = (Mat_SeqBAIJ*)A->data;
30636849ba73SBarry Smith   PetscErrorCode ierr;
3064a96a251dSBarry Smith   PetscInt       i,mbs = a->mbs,nz = a->nz,bs2 = a->bs2;
3065de6a44a3SBarry Smith 
30663a40ed3dSBarry Smith   PetscFunctionBegin;
3067e32f2f54SBarry Smith   if (a->i[mbs] != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Corrupt matrix");
30682593348eSBarry Smith 
30694fd072dbSBarry Smith   if (cpvalues == MAT_SHARE_NONZERO_PATTERN) {
30704fd072dbSBarry Smith     c->imax           = a->imax;
30714fd072dbSBarry Smith     c->ilen           = a->ilen;
30724fd072dbSBarry Smith     c->free_imax_ilen = PETSC_FALSE;
30734fd072dbSBarry Smith   } else {
3074dcca6d9dSJed Brown     ierr = PetscMalloc2(mbs,&c->imax,mbs,&c->ilen);CHKERRQ(ierr);
30753bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)C,2*mbs*sizeof(PetscInt));CHKERRQ(ierr);
3076b6490206SBarry Smith     for (i=0; i<mbs; i++) {
30772593348eSBarry Smith       c->imax[i] = a->imax[i];
30782593348eSBarry Smith       c->ilen[i] = a->ilen[i];
30792593348eSBarry Smith     }
30804fd072dbSBarry Smith     c->free_imax_ilen = PETSC_TRUE;
30814fd072dbSBarry Smith   }
30822593348eSBarry Smith 
30832593348eSBarry Smith   /* allocate the matrix space */
308416a2bf60SHong Zhang   if (mallocmatspace) {
30854fd072dbSBarry Smith     if (cpvalues == MAT_SHARE_NONZERO_PATTERN) {
30861795a4d1SJed Brown       ierr = PetscCalloc1(bs2*nz,&c->a);CHKERRQ(ierr);
30873bb1ff40SBarry Smith       ierr = PetscLogObjectMemory((PetscObject)C,a->i[mbs]*bs2*sizeof(PetscScalar));CHKERRQ(ierr);
308826fbe8dcSKarl Rupp 
30894fd072dbSBarry Smith       c->i            = a->i;
30904fd072dbSBarry Smith       c->j            = a->j;
3091379be0ddSLisandro Dalcin       c->singlemalloc = PETSC_FALSE;
3092379be0ddSLisandro Dalcin       c->free_a       = PETSC_TRUE;
3093379be0ddSLisandro Dalcin       c->free_ij      = PETSC_FALSE;
30944fd072dbSBarry Smith       c->parent       = A;
30951e40a84eSLisandro Dalcin       C->preallocated = PETSC_TRUE;
30961e40a84eSLisandro Dalcin       C->assembled    = PETSC_TRUE;
309726fbe8dcSKarl Rupp 
30984fd072dbSBarry Smith       ierr = PetscObjectReference((PetscObject)A);CHKERRQ(ierr);
30994fd072dbSBarry Smith       ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
31004fd072dbSBarry Smith       ierr = MatSetOption(C,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
31014fd072dbSBarry Smith     } else {
3102dcca6d9dSJed Brown       ierr = PetscMalloc3(bs2*nz,&c->a,nz,&c->j,mbs+1,&c->i);CHKERRQ(ierr);
31033bb1ff40SBarry Smith       ierr = PetscLogObjectMemory((PetscObject)C,a->i[mbs]*(bs2*sizeof(PetscScalar)+sizeof(PetscInt))+(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr);
310426fbe8dcSKarl Rupp 
3105c4992f7dSBarry Smith       c->singlemalloc = PETSC_TRUE;
3106379be0ddSLisandro Dalcin       c->free_a       = PETSC_TRUE;
31074fd072dbSBarry Smith       c->free_ij      = PETSC_TRUE;
310826fbe8dcSKarl Rupp 
3109c1ac3661SBarry Smith       ierr = PetscMemcpy(c->i,a->i,(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr);
3110b6490206SBarry Smith       if (mbs > 0) {
3111c1ac3661SBarry Smith         ierr = PetscMemcpy(c->j,a->j,nz*sizeof(PetscInt));CHKERRQ(ierr);
31122e8a6d31SBarry Smith         if (cpvalues == MAT_COPY_VALUES) {
3113549d3d68SSatish Balay           ierr = PetscMemcpy(c->a,a->a,bs2*nz*sizeof(MatScalar));CHKERRQ(ierr);
31142e8a6d31SBarry Smith         } else {
3115549d3d68SSatish Balay           ierr = PetscMemzero(c->a,bs2*nz*sizeof(MatScalar));CHKERRQ(ierr);
31162593348eSBarry Smith         }
31172593348eSBarry Smith       }
31181e40a84eSLisandro Dalcin       C->preallocated = PETSC_TRUE;
31191e40a84eSLisandro Dalcin       C->assembled    = PETSC_TRUE;
312016a2bf60SHong Zhang     }
31214fd072dbSBarry Smith   }
312216a2bf60SHong Zhang 
31232593348eSBarry Smith   c->roworiented = a->roworiented;
31242593348eSBarry Smith   c->nonew       = a->nonew;
312526fbe8dcSKarl Rupp 
31261e1e43feSBarry Smith   ierr = PetscLayoutReference(A->rmap,&C->rmap);CHKERRQ(ierr);
31271e1e43feSBarry Smith   ierr = PetscLayoutReference(A->cmap,&C->cmap);CHKERRQ(ierr);
312826fbe8dcSKarl Rupp 
31295c9eb25fSBarry Smith   c->bs2         = a->bs2;
31305c9eb25fSBarry Smith   c->mbs         = a->mbs;
31315c9eb25fSBarry Smith   c->nbs         = a->nbs;
31322593348eSBarry Smith 
31332593348eSBarry Smith   if (a->diag) {
31344fd072dbSBarry Smith     if (cpvalues == MAT_SHARE_NONZERO_PATTERN) {
31354fd072dbSBarry Smith       c->diag      = a->diag;
31364fd072dbSBarry Smith       c->free_diag = PETSC_FALSE;
31374fd072dbSBarry Smith     } else {
3138854ce69bSBarry Smith       ierr = PetscMalloc1(mbs+1,&c->diag);CHKERRQ(ierr);
31393bb1ff40SBarry Smith       ierr = PetscLogObjectMemory((PetscObject)C,(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr);
314026fbe8dcSKarl Rupp       for (i=0; i<mbs; i++) c->diag[i] = a->diag[i];
31414fd072dbSBarry Smith       c->free_diag = PETSC_TRUE;
31424fd072dbSBarry Smith     }
314398305bb5SBarry Smith   } else c->diag = 0;
314426fbe8dcSKarl Rupp 
31452593348eSBarry Smith   c->nz         = a->nz;
3146f2cbd3d5SJed Brown   c->maxnz      = a->nz;         /* Since we allocate exactly the right amount */
3147f361c04dSBarry Smith   c->solve_work = NULL;
3148f361c04dSBarry Smith   c->mult_work  = NULL;
3149f361c04dSBarry Smith   c->sor_workt  = NULL;
3150f361c04dSBarry Smith   c->sor_work   = NULL;
315188e51ccdSHong Zhang 
315288e51ccdSHong Zhang   c->compressedrow.use   = a->compressedrow.use;
315388e51ccdSHong Zhang   c->compressedrow.nrows = a->compressedrow.nrows;
3154cd6b891eSBarry Smith   if (a->compressedrow.use) {
315588e51ccdSHong Zhang     i    = a->compressedrow.nrows;
3156dcca6d9dSJed Brown     ierr = PetscMalloc2(i+1,&c->compressedrow.i,i+1,&c->compressedrow.rindex);CHKERRQ(ierr);
31573bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)C,(2*i+1)*sizeof(PetscInt));CHKERRQ(ierr);
315888e51ccdSHong Zhang     ierr = PetscMemcpy(c->compressedrow.i,a->compressedrow.i,(i+1)*sizeof(PetscInt));CHKERRQ(ierr);
315988e51ccdSHong Zhang     ierr = PetscMemcpy(c->compressedrow.rindex,a->compressedrow.rindex,i*sizeof(PetscInt));CHKERRQ(ierr);
316088e51ccdSHong Zhang   } else {
316188e51ccdSHong Zhang     c->compressedrow.use    = PETSC_FALSE;
31620298fd71SBarry Smith     c->compressedrow.i      = NULL;
31630298fd71SBarry Smith     c->compressedrow.rindex = NULL;
316488e51ccdSHong Zhang   }
3165e56f5c9eSBarry Smith   C->nonzerostate = A->nonzerostate;
316626fbe8dcSKarl Rupp 
3167140e18c1SBarry Smith   ierr = PetscFunctionListDuplicate(((PetscObject)A)->qlist,&((PetscObject)C)->qlist);CHKERRQ(ierr);
31685d5aaa0eSBarry Smith   ierr = PetscMemcpy(C->ops,A->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
31693a40ed3dSBarry Smith   PetscFunctionReturn(0);
31702593348eSBarry Smith }
31712593348eSBarry Smith 
31724a2ae208SSatish Balay #undef __FUNCT__
3173b24902e0SBarry Smith #define __FUNCT__ "MatDuplicate_SeqBAIJ"
3174b24902e0SBarry Smith PetscErrorCode MatDuplicate_SeqBAIJ(Mat A,MatDuplicateOption cpvalues,Mat *B)
3175b24902e0SBarry Smith {
3176b24902e0SBarry Smith   PetscErrorCode ierr;
3177b24902e0SBarry Smith 
3178b24902e0SBarry Smith   PetscFunctionBegin;
3179ce94432eSBarry Smith   ierr = MatCreate(PetscObjectComm((PetscObject)A),B);CHKERRQ(ierr);
3180d0f46423SBarry Smith   ierr = MatSetSizes(*B,A->rmap->N,A->cmap->n,A->rmap->N,A->cmap->n);CHKERRQ(ierr);
31815c9eb25fSBarry Smith   ierr = MatSetType(*B,MATSEQBAIJ);CHKERRQ(ierr);
318298ad0f72SJed Brown   ierr = MatDuplicateNoCreate_SeqBAIJ(*B,A,cpvalues,PETSC_TRUE);CHKERRQ(ierr);
3183b24902e0SBarry Smith   PetscFunctionReturn(0);
3184b24902e0SBarry Smith }
3185b24902e0SBarry Smith 
3186b24902e0SBarry Smith #undef __FUNCT__
31875bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_SeqBAIJ"
3188112444f4SShri Abhyankar PetscErrorCode MatLoad_SeqBAIJ(Mat newmat,PetscViewer viewer)
3189f501eaabSShri Abhyankar {
3190f501eaabSShri Abhyankar   Mat_SeqBAIJ    *a;
3191f501eaabSShri Abhyankar   PetscErrorCode ierr;
31923059b6faSBarry Smith   PetscInt       i,nz,header[4],*rowlengths=0,M,N,bs = newmat->rmap->bs;
3193f501eaabSShri Abhyankar   PetscInt       *mask,mbs,*jj,j,rowcount,nzcount,k,*browlengths,maskcount;
3194f501eaabSShri Abhyankar   PetscInt       kmax,jcount,block,idx,point,nzcountb,extra_rows,rows,cols;
3195f501eaabSShri Abhyankar   PetscInt       *masked,nmask,tmp,bs2,ishift;
3196f501eaabSShri Abhyankar   PetscMPIInt    size;
3197f501eaabSShri Abhyankar   int            fd;
3198f501eaabSShri Abhyankar   PetscScalar    *aa;
3199ce94432eSBarry Smith   MPI_Comm       comm;
3200f501eaabSShri Abhyankar 
3201f501eaabSShri Abhyankar   PetscFunctionBegin;
3202c98fd787SBarry Smith   /* force binary viewer to load .info file if it has not yet done so */
3203c98fd787SBarry Smith   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
3204ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr);
32050298fd71SBarry Smith   ierr = PetscOptionsBegin(comm,NULL,"Options for loading SEQBAIJ matrix","Mat");CHKERRQ(ierr);
32060298fd71SBarry Smith   ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,NULL);CHKERRQ(ierr);
3207f501eaabSShri Abhyankar   ierr = PetscOptionsEnd();CHKERRQ(ierr);
32083059b6faSBarry Smith   if (bs < 0) bs = 1;
3209f501eaabSShri Abhyankar   bs2  = bs*bs;
3210f501eaabSShri Abhyankar 
3211f501eaabSShri Abhyankar   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
3212f501eaabSShri Abhyankar   if (size > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"view must have one processor");
3213f501eaabSShri Abhyankar   ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
3214f501eaabSShri Abhyankar   ierr = PetscBinaryRead(fd,header,4,PETSC_INT);CHKERRQ(ierr);
3215f501eaabSShri Abhyankar   if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not Mat object");
3216f501eaabSShri Abhyankar   M = header[1]; N = header[2]; nz = header[3];
3217f501eaabSShri Abhyankar 
3218f501eaabSShri Abhyankar   if (header[3] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as SeqBAIJ");
3219f501eaabSShri Abhyankar   if (M != N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Can only do square matrices");
3220f501eaabSShri Abhyankar 
3221f501eaabSShri Abhyankar   /*
3222f501eaabSShri Abhyankar      This code adds extra rows to make sure the number of rows is
3223f501eaabSShri Abhyankar     divisible by the blocksize
3224f501eaabSShri Abhyankar   */
3225f501eaabSShri Abhyankar   mbs        = M/bs;
3226f501eaabSShri Abhyankar   extra_rows = bs - M + bs*(mbs);
3227f501eaabSShri Abhyankar   if (extra_rows == bs) extra_rows = 0;
3228f501eaabSShri Abhyankar   else mbs++;
3229f501eaabSShri Abhyankar   if (extra_rows) {
3230f501eaabSShri Abhyankar     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
3231f501eaabSShri Abhyankar   }
3232f501eaabSShri Abhyankar 
3233f501eaabSShri Abhyankar   /* Set global sizes if not already set */
3234f501eaabSShri Abhyankar   if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) {
3235f501eaabSShri Abhyankar     ierr = MatSetSizes(newmat,PETSC_DECIDE,PETSC_DECIDE,M+extra_rows,N+extra_rows);CHKERRQ(ierr);
3236f501eaabSShri Abhyankar   } else { /* Check if the matrix global sizes are correct */
3237f501eaabSShri Abhyankar     ierr = MatGetSize(newmat,&rows,&cols);CHKERRQ(ierr);
32384c5b953cSHong Zhang     if (rows < 0 && cols < 0) { /* user might provide local size instead of global size */
32394c5b953cSHong Zhang       ierr = MatGetLocalSize(newmat,&rows,&cols);CHKERRQ(ierr);
32404c5b953cSHong Zhang     }
3241f501eaabSShri Abhyankar     if (M != rows ||  N != cols) SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix in file of different length (%d, %d) than the input matrix (%d, %d)",M,N,rows,cols);
3242f501eaabSShri Abhyankar   }
3243f501eaabSShri Abhyankar 
3244f501eaabSShri Abhyankar   /* read in row lengths */
3245854ce69bSBarry Smith   ierr = PetscMalloc1(M+extra_rows,&rowlengths);CHKERRQ(ierr);
3246f501eaabSShri Abhyankar   ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
3247f501eaabSShri Abhyankar   for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
3248f501eaabSShri Abhyankar 
3249f501eaabSShri Abhyankar   /* read in column indices */
3250854ce69bSBarry Smith   ierr = PetscMalloc1(nz+extra_rows,&jj);CHKERRQ(ierr);
3251f501eaabSShri Abhyankar   ierr = PetscBinaryRead(fd,jj,nz,PETSC_INT);CHKERRQ(ierr);
3252f501eaabSShri Abhyankar   for (i=0; i<extra_rows; i++) jj[nz+i] = M+i;
3253f501eaabSShri Abhyankar 
3254f501eaabSShri Abhyankar   /* loop over row lengths determining block row lengths */
32551795a4d1SJed Brown   ierr     = PetscCalloc1(mbs,&browlengths);CHKERRQ(ierr);
3256dcca6d9dSJed Brown   ierr     = PetscMalloc2(mbs,&mask,mbs,&masked);CHKERRQ(ierr);
3257f501eaabSShri Abhyankar   ierr     = PetscMemzero(mask,mbs*sizeof(PetscInt));CHKERRQ(ierr);
3258f501eaabSShri Abhyankar   rowcount = 0;
3259f501eaabSShri Abhyankar   nzcount  = 0;
3260f501eaabSShri Abhyankar   for (i=0; i<mbs; i++) {
3261f501eaabSShri Abhyankar     nmask = 0;
3262f501eaabSShri Abhyankar     for (j=0; j<bs; j++) {
3263f501eaabSShri Abhyankar       kmax = rowlengths[rowcount];
3264f501eaabSShri Abhyankar       for (k=0; k<kmax; k++) {
3265f501eaabSShri Abhyankar         tmp = jj[nzcount++]/bs;
3266f501eaabSShri Abhyankar         if (!mask[tmp]) {masked[nmask++] = tmp; mask[tmp] = 1;}
3267f501eaabSShri Abhyankar       }
3268f501eaabSShri Abhyankar       rowcount++;
3269f501eaabSShri Abhyankar     }
3270f501eaabSShri Abhyankar     browlengths[i] += nmask;
3271f501eaabSShri Abhyankar     /* zero out the mask elements we set */
3272f501eaabSShri Abhyankar     for (j=0; j<nmask; j++) mask[masked[j]] = 0;
3273f501eaabSShri Abhyankar   }
3274f501eaabSShri Abhyankar 
32752f480046SShri Abhyankar   /* Do preallocation  */
3276f501eaabSShri Abhyankar   ierr = MatSeqBAIJSetPreallocation_SeqBAIJ(newmat,bs,0,browlengths);CHKERRQ(ierr);
3277f501eaabSShri Abhyankar   a    = (Mat_SeqBAIJ*)newmat->data;
3278f501eaabSShri Abhyankar 
3279f501eaabSShri Abhyankar   /* set matrix "i" values */
3280f501eaabSShri Abhyankar   a->i[0] = 0;
3281f501eaabSShri Abhyankar   for (i=1; i<= mbs; i++) {
3282f501eaabSShri Abhyankar     a->i[i]      = a->i[i-1] + browlengths[i-1];
3283f501eaabSShri Abhyankar     a->ilen[i-1] = browlengths[i-1];
3284f501eaabSShri Abhyankar   }
3285f501eaabSShri Abhyankar   a->nz = 0;
3286f501eaabSShri Abhyankar   for (i=0; i<mbs; i++) a->nz += browlengths[i];
3287f501eaabSShri Abhyankar 
3288f501eaabSShri Abhyankar   /* read in nonzero values */
3289854ce69bSBarry Smith   ierr = PetscMalloc1(nz+extra_rows,&aa);CHKERRQ(ierr);
3290f501eaabSShri Abhyankar   ierr = PetscBinaryRead(fd,aa,nz,PETSC_SCALAR);CHKERRQ(ierr);
3291f501eaabSShri Abhyankar   for (i=0; i<extra_rows; i++) aa[nz+i] = 1.0;
3292f501eaabSShri Abhyankar 
3293f501eaabSShri Abhyankar   /* set "a" and "j" values into matrix */
3294f501eaabSShri Abhyankar   nzcount = 0; jcount = 0;
3295f501eaabSShri Abhyankar   for (i=0; i<mbs; i++) {
3296f501eaabSShri Abhyankar     nzcountb = nzcount;
3297f501eaabSShri Abhyankar     nmask    = 0;
3298f501eaabSShri Abhyankar     for (j=0; j<bs; j++) {
3299f501eaabSShri Abhyankar       kmax = rowlengths[i*bs+j];
3300f501eaabSShri Abhyankar       for (k=0; k<kmax; k++) {
3301f501eaabSShri Abhyankar         tmp = jj[nzcount++]/bs;
3302f501eaabSShri Abhyankar         if (!mask[tmp]) { masked[nmask++] = tmp; mask[tmp] = 1;}
3303f501eaabSShri Abhyankar       }
3304f501eaabSShri Abhyankar     }
3305f501eaabSShri Abhyankar     /* sort the masked values */
3306f501eaabSShri Abhyankar     ierr = PetscSortInt(nmask,masked);CHKERRQ(ierr);
3307f501eaabSShri Abhyankar 
3308f501eaabSShri Abhyankar     /* set "j" values into matrix */
3309f501eaabSShri Abhyankar     maskcount = 1;
3310f501eaabSShri Abhyankar     for (j=0; j<nmask; j++) {
3311f501eaabSShri Abhyankar       a->j[jcount++]  = masked[j];
3312f501eaabSShri Abhyankar       mask[masked[j]] = maskcount++;
3313f501eaabSShri Abhyankar     }
3314f501eaabSShri Abhyankar     /* set "a" values into matrix */
3315f501eaabSShri Abhyankar     ishift = bs2*a->i[i];
3316f501eaabSShri Abhyankar     for (j=0; j<bs; j++) {
3317f501eaabSShri Abhyankar       kmax = rowlengths[i*bs+j];
3318f501eaabSShri Abhyankar       for (k=0; k<kmax; k++) {
3319f501eaabSShri Abhyankar         tmp       = jj[nzcountb]/bs;
3320f501eaabSShri Abhyankar         block     = mask[tmp] - 1;
3321f501eaabSShri Abhyankar         point     = jj[nzcountb] - bs*tmp;
3322f501eaabSShri Abhyankar         idx       = ishift + bs2*block + j + bs*point;
3323f501eaabSShri Abhyankar         a->a[idx] = (MatScalar)aa[nzcountb++];
3324f501eaabSShri Abhyankar       }
3325f501eaabSShri Abhyankar     }
3326f501eaabSShri Abhyankar     /* zero out the mask elements we set */
3327f501eaabSShri Abhyankar     for (j=0; j<nmask; j++) mask[masked[j]] = 0;
3328f501eaabSShri Abhyankar   }
3329f501eaabSShri Abhyankar   if (jcount != a->nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Bad binary matrix");
3330f501eaabSShri Abhyankar 
3331f501eaabSShri Abhyankar   ierr = PetscFree(rowlengths);CHKERRQ(ierr);
3332f501eaabSShri Abhyankar   ierr = PetscFree(browlengths);CHKERRQ(ierr);
3333f501eaabSShri Abhyankar   ierr = PetscFree(aa);CHKERRQ(ierr);
3334f501eaabSShri Abhyankar   ierr = PetscFree(jj);CHKERRQ(ierr);
3335f501eaabSShri Abhyankar   ierr = PetscFree2(mask,masked);CHKERRQ(ierr);
3336f501eaabSShri Abhyankar 
3337f501eaabSShri Abhyankar   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
3338f501eaabSShri Abhyankar   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
3339f501eaabSShri Abhyankar   PetscFunctionReturn(0);
3340f501eaabSShri Abhyankar }
3341f501eaabSShri Abhyankar 
3342f501eaabSShri Abhyankar #undef __FUNCT__
33434a2ae208SSatish Balay #define __FUNCT__ "MatCreateSeqBAIJ"
3344273d9f13SBarry Smith /*@C
3345273d9f13SBarry Smith    MatCreateSeqBAIJ - Creates a sparse matrix in block AIJ (block
3346273d9f13SBarry Smith    compressed row) format.  For good matrix assembly performance the
3347273d9f13SBarry Smith    user should preallocate the matrix storage by setting the parameter nz
3348273d9f13SBarry Smith    (or the array nnz).  By setting these parameters accurately, performance
3349273d9f13SBarry Smith    during matrix assembly can be increased by more than a factor of 50.
33502593348eSBarry Smith 
3351273d9f13SBarry Smith    Collective on MPI_Comm
3352273d9f13SBarry Smith 
3353273d9f13SBarry Smith    Input Parameters:
3354273d9f13SBarry Smith +  comm - MPI communicator, set to PETSC_COMM_SELF
3355bb7ae925SBarry Smith .  bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
3356bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
3357273d9f13SBarry Smith .  m - number of rows
3358273d9f13SBarry Smith .  n - number of columns
335935d8aa7fSBarry Smith .  nz - number of nonzero blocks  per block row (same for all rows)
336035d8aa7fSBarry Smith -  nnz - array containing the number of nonzero blocks in the various block rows
33610298fd71SBarry Smith          (possibly different for each block row) or NULL
3362273d9f13SBarry Smith 
3363273d9f13SBarry Smith    Output Parameter:
3364273d9f13SBarry Smith .  A - the matrix
3365273d9f13SBarry Smith 
3366175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
3367ae1d86c5SBarry Smith    MatXXXXSetPreallocation() paradgm instead of this routine directly.
3368175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
3369175b88e8SBarry Smith 
3370273d9f13SBarry Smith    Options Database Keys:
3371273d9f13SBarry Smith .   -mat_no_unroll - uses code that does not unroll the loops in the
3372273d9f13SBarry Smith                      block calculations (much slower)
3373273d9f13SBarry Smith .    -mat_block_size - size of the blocks to use
3374273d9f13SBarry Smith 
3375273d9f13SBarry Smith    Level: intermediate
3376273d9f13SBarry Smith 
3377273d9f13SBarry Smith    Notes:
3378d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
3379d1be2dadSMatthew Knepley 
338049a6f317SBarry Smith    If the nnz parameter is given then the nz parameter is ignored
338149a6f317SBarry Smith 
338235d8aa7fSBarry Smith    A nonzero block is any block that as 1 or more nonzeros in it
338335d8aa7fSBarry Smith 
3384273d9f13SBarry Smith    The block AIJ format is fully compatible with standard Fortran 77
3385273d9f13SBarry Smith    storage.  That is, the stored row and column indices can begin at
3386273d9f13SBarry Smith    either one (as in Fortran) or zero.  See the users' manual for details.
3387273d9f13SBarry Smith 
3388273d9f13SBarry Smith    Specify the preallocated storage with either nz or nnz (not both).
33890298fd71SBarry Smith    Set nz=PETSC_DEFAULT and nnz=NULL for PETSc to control dynamic memory
3390a7f22e61SSatish Balay    allocation.  See Users-Manual: ch_mat for details.
3391273d9f13SBarry Smith    matrices.
3392273d9f13SBarry Smith 
339369b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatCreateBAIJ()
3394273d9f13SBarry Smith @*/
33957087cfbeSBarry Smith PetscErrorCode  MatCreateSeqBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt nz,const PetscInt nnz[],Mat *A)
3396273d9f13SBarry Smith {
3397dfbe8321SBarry Smith   PetscErrorCode ierr;
3398273d9f13SBarry Smith 
3399273d9f13SBarry Smith   PetscFunctionBegin;
3400f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
3401f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,m,n);CHKERRQ(ierr);
3402273d9f13SBarry Smith   ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr);
3403ab93d7beSBarry Smith   ierr = MatSeqBAIJSetPreallocation_SeqBAIJ(*A,bs,nz,(PetscInt*)nnz);CHKERRQ(ierr);
3404273d9f13SBarry Smith   PetscFunctionReturn(0);
3405273d9f13SBarry Smith }
3406273d9f13SBarry Smith 
34074a2ae208SSatish Balay #undef __FUNCT__
34084a2ae208SSatish Balay #define __FUNCT__ "MatSeqBAIJSetPreallocation"
3409273d9f13SBarry Smith /*@C
3410273d9f13SBarry Smith    MatSeqBAIJSetPreallocation - Sets the block size and expected nonzeros
3411273d9f13SBarry Smith    per row in the matrix. For good matrix assembly performance the
3412273d9f13SBarry Smith    user should preallocate the matrix storage by setting the parameter nz
3413273d9f13SBarry Smith    (or the array nnz).  By setting these parameters accurately, performance
3414273d9f13SBarry Smith    during matrix assembly can be increased by more than a factor of 50.
3415273d9f13SBarry Smith 
3416273d9f13SBarry Smith    Collective on MPI_Comm
3417273d9f13SBarry Smith 
3418273d9f13SBarry Smith    Input Parameters:
34191c4f3114SJed Brown +  B - the matrix
3420bb7ae925SBarry Smith .  bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
3421bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
3422273d9f13SBarry Smith .  nz - number of block nonzeros per block row (same for all rows)
3423273d9f13SBarry Smith -  nnz - array containing the number of block nonzeros in the various block rows
34240298fd71SBarry Smith          (possibly different for each block row) or NULL
3425273d9f13SBarry Smith 
3426273d9f13SBarry Smith    Options Database Keys:
3427273d9f13SBarry Smith .   -mat_no_unroll - uses code that does not unroll the loops in the
3428273d9f13SBarry Smith                      block calculations (much slower)
3429273d9f13SBarry Smith .   -mat_block_size - size of the blocks to use
3430273d9f13SBarry Smith 
3431273d9f13SBarry Smith    Level: intermediate
3432273d9f13SBarry Smith 
3433273d9f13SBarry Smith    Notes:
343449a6f317SBarry Smith    If the nnz parameter is given then the nz parameter is ignored
343549a6f317SBarry Smith 
3436aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
3437aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
3438aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
3439aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
3440aa95bbe8SBarry Smith 
3441273d9f13SBarry Smith    The block AIJ format is fully compatible with standard Fortran 77
3442273d9f13SBarry Smith    storage.  That is, the stored row and column indices can begin at
3443273d9f13SBarry Smith    either one (as in Fortran) or zero.  See the users' manual for details.
3444273d9f13SBarry Smith 
3445273d9f13SBarry Smith    Specify the preallocated storage with either nz or nnz (not both).
34460298fd71SBarry Smith    Set nz=PETSC_DEFAULT and nnz=NULL for PETSc to control dynamic memory
3447a7f22e61SSatish Balay    allocation.  See Users-Manual: ch_mat for details.
3448273d9f13SBarry Smith 
344969b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatCreateBAIJ(), MatGetInfo()
3450273d9f13SBarry Smith @*/
34517087cfbeSBarry Smith PetscErrorCode  MatSeqBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt nz,const PetscInt nnz[])
3452273d9f13SBarry Smith {
34534ac538c5SBarry Smith   PetscErrorCode ierr;
3454273d9f13SBarry Smith 
3455273d9f13SBarry Smith   PetscFunctionBegin;
34566ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
34576ba663aaSJed Brown   PetscValidType(B,1);
34586ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
34594ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatSeqBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[]),(B,bs,nz,nnz));CHKERRQ(ierr);
3460273d9f13SBarry Smith   PetscFunctionReturn(0);
3461273d9f13SBarry Smith }
3462a1d92eedSBarry Smith 
3463c75a6043SHong Zhang #undef __FUNCT__
3464725b52f3SLisandro Dalcin #define __FUNCT__ "MatSeqBAIJSetPreallocationCSR"
3465725b52f3SLisandro Dalcin /*@C
3466725b52f3SLisandro Dalcin    MatSeqBAIJSetPreallocationCSR - Allocates memory for a sparse sequential matrix in AIJ format
3467725b52f3SLisandro Dalcin    (the default sequential PETSc format).
3468725b52f3SLisandro Dalcin 
3469725b52f3SLisandro Dalcin    Collective on MPI_Comm
3470725b52f3SLisandro Dalcin 
3471725b52f3SLisandro Dalcin    Input Parameters:
34721c4f3114SJed Brown +  B - the matrix
3473725b52f3SLisandro Dalcin .  i - the indices into j for the start of each local row (starts with zero)
3474725b52f3SLisandro Dalcin .  j - the column indices for each local row (starts with zero) these must be sorted for each row
3475725b52f3SLisandro Dalcin -  v - optional values in the matrix
3476725b52f3SLisandro Dalcin 
3477725b52f3SLisandro Dalcin    Level: developer
3478725b52f3SLisandro Dalcin 
34793adadaf3SJed Brown    Notes:
34803adadaf3SJed Brown    The order of the entries in values is specified by the MatOption MAT_ROW_ORIENTED.  For example, C programs
34813adadaf3SJed Brown    may want to use the default MAT_ROW_ORIENTED=PETSC_TRUE and use an array v[nnz][bs][bs] where the second index is
34823adadaf3SJed Brown    over rows within a block and the last index is over columns within a block row.  Fortran programs will likely set
34833adadaf3SJed Brown    MAT_ROW_ORIENTED=PETSC_FALSE and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a
34843adadaf3SJed Brown    block column and the second index is over columns within a block.
34853adadaf3SJed Brown 
3486725b52f3SLisandro Dalcin .keywords: matrix, aij, compressed row, sparse
3487725b52f3SLisandro Dalcin 
3488725b52f3SLisandro Dalcin .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatSeqBAIJSetPreallocation(), MATSEQBAIJ
3489725b52f3SLisandro Dalcin @*/
34907087cfbeSBarry Smith PetscErrorCode  MatSeqBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
3491725b52f3SLisandro Dalcin {
34924ac538c5SBarry Smith   PetscErrorCode ierr;
3493725b52f3SLisandro Dalcin 
3494725b52f3SLisandro Dalcin   PetscFunctionBegin;
34956ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
34966ba663aaSJed Brown   PetscValidType(B,1);
34976ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
34984ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatSeqBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr);
3499725b52f3SLisandro Dalcin   PetscFunctionReturn(0);
3500725b52f3SLisandro Dalcin }
3501725b52f3SLisandro Dalcin 
3502725b52f3SLisandro Dalcin 
3503725b52f3SLisandro Dalcin #undef __FUNCT__
3504c75a6043SHong Zhang #define __FUNCT__ "MatCreateSeqBAIJWithArrays"
3505c75a6043SHong Zhang /*@
3506dfb205c3SBarry Smith      MatCreateSeqBAIJWithArrays - Creates an sequential BAIJ matrix using matrix elements provided by the user.
3507c75a6043SHong Zhang 
3508c75a6043SHong Zhang      Collective on MPI_Comm
3509c75a6043SHong Zhang 
3510c75a6043SHong Zhang    Input Parameters:
3511c75a6043SHong Zhang +  comm - must be an MPI communicator of size 1
3512c75a6043SHong Zhang .  bs - size of block
3513c75a6043SHong Zhang .  m - number of rows
3514c75a6043SHong Zhang .  n - number of columns
3515c75a6043SHong Zhang .  i - row indices
3516c75a6043SHong Zhang .  j - column indices
3517c75a6043SHong Zhang -  a - matrix values
3518c75a6043SHong Zhang 
3519c75a6043SHong Zhang    Output Parameter:
3520c75a6043SHong Zhang .  mat - the matrix
3521c75a6043SHong Zhang 
3522dfb205c3SBarry Smith    Level: advanced
3523c75a6043SHong Zhang 
3524c75a6043SHong Zhang    Notes:
3525c75a6043SHong Zhang        The i, j, and a arrays are not copied by this routine, the user must free these arrays
3526c75a6043SHong Zhang     once the matrix is destroyed
3527c75a6043SHong Zhang 
3528c75a6043SHong Zhang        You cannot set new nonzero locations into this matrix, that will generate an error.
3529c75a6043SHong Zhang 
3530c75a6043SHong Zhang        The i and j indices are 0 based
3531c75a6043SHong Zhang 
3532dfb205c3SBarry Smith        When block size is greater than 1 the matrix values must be stored using the BAIJ storage format (see the BAIJ code to determine this).
3533dfb205c3SBarry Smith 
35343adadaf3SJed Brown       The order of the entries in values is the same as the block compressed sparse row storage format; that is, it is
35353adadaf3SJed Brown       the same as a three dimensional array in Fortran values(bs,bs,nnz) that contains the first column of the first
35363adadaf3SJed Brown       block, followed by the second column of the first block etc etc.  That is, the blocks are contiguous in memory
35373adadaf3SJed Brown       with column-major ordering within blocks.
3538dfb205c3SBarry Smith 
353969b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateBAIJ(), MatCreateSeqBAIJ()
3540c75a6043SHong Zhang 
3541c75a6043SHong Zhang @*/
35427087cfbeSBarry Smith PetscErrorCode  MatCreateSeqBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt *i,PetscInt *j,PetscScalar *a,Mat *mat)
3543c75a6043SHong Zhang {
3544c75a6043SHong Zhang   PetscErrorCode ierr;
3545c75a6043SHong Zhang   PetscInt       ii;
3546c75a6043SHong Zhang   Mat_SeqBAIJ    *baij;
3547c75a6043SHong Zhang 
3548c75a6043SHong Zhang   PetscFunctionBegin;
3549e32f2f54SBarry Smith   if (bs != 1) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"block size %D > 1 is not supported yet",bs);
3550e32f2f54SBarry Smith   if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0");
3551c75a6043SHong Zhang 
3552c75a6043SHong Zhang   ierr = MatCreate(comm,mat);CHKERRQ(ierr);
3553c75a6043SHong Zhang   ierr = MatSetSizes(*mat,m,n,m,n);CHKERRQ(ierr);
3554c75a6043SHong Zhang   ierr = MatSetType(*mat,MATSEQBAIJ);CHKERRQ(ierr);
3555c75a6043SHong Zhang   ierr = MatSeqBAIJSetPreallocation_SeqBAIJ(*mat,bs,MAT_SKIP_ALLOCATION,0);CHKERRQ(ierr);
3556c75a6043SHong Zhang   baij = (Mat_SeqBAIJ*)(*mat)->data;
3557dcca6d9dSJed Brown   ierr = PetscMalloc2(m,&baij->imax,m,&baij->ilen);CHKERRQ(ierr);
35583bb1ff40SBarry Smith   ierr = PetscLogObjectMemory((PetscObject)*mat,2*m*sizeof(PetscInt));CHKERRQ(ierr);
3559c75a6043SHong Zhang 
3560c75a6043SHong Zhang   baij->i = i;
3561c75a6043SHong Zhang   baij->j = j;
3562c75a6043SHong Zhang   baij->a = a;
356326fbe8dcSKarl Rupp 
3564c75a6043SHong Zhang   baij->singlemalloc = PETSC_FALSE;
3565c75a6043SHong Zhang   baij->nonew        = -1;             /*this indicates that inserting a new value in the matrix that generates a new nonzero is an error*/
3566e6b907acSBarry Smith   baij->free_a       = PETSC_FALSE;
3567e6b907acSBarry Smith   baij->free_ij      = PETSC_FALSE;
3568c75a6043SHong Zhang 
3569c75a6043SHong Zhang   for (ii=0; ii<m; ii++) {
3570c75a6043SHong Zhang     baij->ilen[ii] = baij->imax[ii] = i[ii+1] - i[ii];
3571c75a6043SHong Zhang #if defined(PETSC_USE_DEBUG)
3572e32f2f54SBarry Smith     if (i[ii+1] - i[ii] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row length in i (row indices) row = %d length = %d",ii,i[ii+1] - i[ii]);
3573c75a6043SHong Zhang #endif
3574c75a6043SHong Zhang   }
3575c75a6043SHong Zhang #if defined(PETSC_USE_DEBUG)
3576c75a6043SHong Zhang   for (ii=0; ii<baij->i[m]; ii++) {
3577e32f2f54SBarry Smith     if (j[ii] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column index at location = %d index = %d",ii,j[ii]);
3578e32f2f54SBarry Smith     if (j[ii] > n - 1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column index to large at location = %d index = %d",ii,j[ii]);
3579c75a6043SHong Zhang   }
3580c75a6043SHong Zhang #endif
3581c75a6043SHong Zhang 
3582c75a6043SHong Zhang   ierr = MatAssemblyBegin(*mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
3583c75a6043SHong Zhang   ierr = MatAssemblyEnd(*mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
3584c75a6043SHong Zhang   PetscFunctionReturn(0);
3585c75a6043SHong Zhang }
3586bdf6f3fcSHong Zhang 
3587bdf6f3fcSHong Zhang #undef __FUNCT__
3588bdf6f3fcSHong Zhang #define __FUNCT__ "MatCreateMPIMatConcatenateSeqMat_SeqBAIJ"
3589bdf6f3fcSHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_SeqBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat)
3590bdf6f3fcSHong Zhang {
3591bdf6f3fcSHong Zhang   PetscErrorCode ierr;
3592bdf6f3fcSHong Zhang 
3593bdf6f3fcSHong Zhang   PetscFunctionBegin;
3594bdf6f3fcSHong Zhang   ierr = MatCreateMPIMatConcatenateSeqMat_MPIBAIJ(comm,inmat,n,scall,outmat);CHKERRQ(ierr);
3595bdf6f3fcSHong Zhang   PetscFunctionReturn(0);
3596bdf6f3fcSHong Zhang }
3597