xref: /petsc/src/mat/impls/baij/seq/baij.c (revision cac4c232dc4f93991e342196e27ef7b0655dac7b)
1be1d678aSKris Buschelman 
22593348eSBarry Smith /*
3b6490206SBarry Smith     Defines the basic matrix operations for the BAIJ (compressed row)
42593348eSBarry Smith   matrix storage format.
52593348eSBarry Smith */
6c6db04a5SJed Brown #include <../src/mat/impls/baij/seq/baij.h>  /*I   "petscmat.h"  I*/
7c6db04a5SJed Brown #include <petscblaslapack.h>
8af0996ceSBarry Smith #include <petsc/private/kernels/blockinvert.h>
9af0996ceSBarry Smith #include <petsc/private/kernels/blockmatmult.h>
1043516a2dSKris Buschelman 
117ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE)
127ea3e4caSstefano_zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat,MatType,MatReuse,Mat*);
137ea3e4caSstefano_zampini #endif
147ea3e4caSstefano_zampini 
15b5b72c8aSIrina Sokolova #if defined(PETSC_HAVE_MKL_SPARSE_OPTIMIZE)
16fd9d3c67SJed Brown PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqBAIJMKL(Mat,MatType,MatReuse,Mat*);
17b5b72c8aSIrina Sokolova #endif
18c9225affSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat,MatType,MatReuse,Mat*);
19b5b72c8aSIrina Sokolova 
20857cbf51SRichard Tran Mills PetscErrorCode MatGetColumnReductions_SeqBAIJ(Mat A,PetscInt type,PetscReal *reductions)
219463ebdaSPierre Jolivet {
229463ebdaSPierre Jolivet   Mat_SeqBAIJ    *a_aij = (Mat_SeqBAIJ*) A->data;
23857cbf51SRichard Tran Mills   PetscInt       m,n,i;
249463ebdaSPierre Jolivet   PetscInt       ib,jb,bs = A->rmap->bs;
259463ebdaSPierre Jolivet   MatScalar      *a_val = a_aij->a;
269463ebdaSPierre Jolivet 
279463ebdaSPierre Jolivet   PetscFunctionBegin;
289566063dSJacob Faibussowitsch   PetscCall(MatGetSize(A,&m,&n));
29857cbf51SRichard Tran Mills   for (i=0; i<n; i++) reductions[i] = 0.0;
309463ebdaSPierre Jolivet   if (type == NORM_2) {
319463ebdaSPierre Jolivet     for (i=a_aij->i[0]; i<a_aij->i[A->rmap->n/bs]; i++) {
329463ebdaSPierre Jolivet       for (jb=0; jb<bs; jb++) {
339463ebdaSPierre Jolivet         for (ib=0; ib<bs; ib++) {
34857cbf51SRichard Tran Mills           reductions[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val * *a_val);
359463ebdaSPierre Jolivet           a_val++;
369463ebdaSPierre Jolivet         }
379463ebdaSPierre Jolivet       }
389463ebdaSPierre Jolivet     }
399463ebdaSPierre Jolivet   } else if (type == NORM_1) {
409463ebdaSPierre Jolivet     for (i=a_aij->i[0]; i<a_aij->i[A->rmap->n/bs]; i++) {
419463ebdaSPierre Jolivet       for (jb=0; jb<bs; jb++) {
429463ebdaSPierre Jolivet         for (ib=0; ib<bs; ib++) {
43857cbf51SRichard Tran Mills           reductions[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val);
449463ebdaSPierre Jolivet           a_val++;
459463ebdaSPierre Jolivet         }
469463ebdaSPierre Jolivet       }
479463ebdaSPierre Jolivet     }
489463ebdaSPierre Jolivet   } else if (type == NORM_INFINITY) {
499463ebdaSPierre Jolivet     for (i=a_aij->i[0]; i<a_aij->i[A->rmap->n/bs]; i++) {
509463ebdaSPierre Jolivet       for (jb=0; jb<bs; jb++) {
519463ebdaSPierre Jolivet         for (ib=0; ib<bs; ib++) {
529463ebdaSPierre Jolivet           int col = A->cmap->rstart + a_aij->j[i] * bs + jb;
53857cbf51SRichard Tran Mills           reductions[col] = PetscMax(PetscAbsScalar(*a_val), reductions[col]);
549463ebdaSPierre Jolivet           a_val++;
559463ebdaSPierre Jolivet         }
569463ebdaSPierre Jolivet       }
579463ebdaSPierre Jolivet     }
58857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) {
59857cbf51SRichard Tran Mills     for (i=a_aij->i[0]; i<a_aij->i[A->rmap->n/bs]; i++) {
60857cbf51SRichard Tran Mills       for (jb=0; jb<bs; jb++) {
61857cbf51SRichard Tran Mills         for (ib=0; ib<bs; ib++) {
62857cbf51SRichard Tran Mills           reductions[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscRealPart(*a_val);
63857cbf51SRichard Tran Mills           a_val++;
64857cbf51SRichard Tran Mills         }
65857cbf51SRichard Tran Mills       }
66857cbf51SRichard Tran Mills     }
67857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) {
68857cbf51SRichard Tran Mills     for (i=a_aij->i[0]; i<a_aij->i[A->rmap->n/bs]; i++) {
69857cbf51SRichard Tran Mills       for (jb=0; jb<bs; jb++) {
70857cbf51SRichard Tran Mills         for (ib=0; ib<bs; ib++) {
71857cbf51SRichard Tran Mills           reductions[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscImaginaryPart(*a_val);
72857cbf51SRichard Tran Mills           a_val++;
73857cbf51SRichard Tran Mills         }
74857cbf51SRichard Tran Mills       }
75857cbf51SRichard Tran Mills     }
76857cbf51SRichard Tran Mills   } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Unknown reduction type");
779463ebdaSPierre Jolivet   if (type == NORM_2) {
78857cbf51SRichard Tran Mills     for (i=0; i<n; i++) reductions[i] = PetscSqrtReal(reductions[i]);
79857cbf51SRichard Tran Mills   } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) {
80857cbf51SRichard Tran Mills     for (i=0; i<n; i++) reductions[i] /= m;
819463ebdaSPierre Jolivet   }
829463ebdaSPierre Jolivet   PetscFunctionReturn(0);
839463ebdaSPierre Jolivet }
849463ebdaSPierre Jolivet 
85713ccfa9SJed Brown PetscErrorCode MatInvertBlockDiagonal_SeqBAIJ(Mat A,const PetscScalar **values)
86b01c7715SBarry Smith {
87b01c7715SBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*) A->data;
88de80f912SBarry Smith   PetscInt       *diag_offset,i,bs = A->rmap->bs,mbs = a->mbs,ipvt[5],bs2 = bs*bs,*v_pivots;
897f0c90edSBarry Smith   MatScalar      *v    = a->a,*odiag,*diag,work[25],*v_work;
9062bba022SBarry Smith   PetscReal      shift = 0.0;
911a9391e3SHong Zhang   PetscBool      allowzeropivot,zeropivotdetected=PETSC_FALSE;
92b01c7715SBarry Smith 
93b01c7715SBarry Smith   PetscFunctionBegin;
94a455e926SHong Zhang   allowzeropivot = PetscNot(A->erroriffailure);
95a455e926SHong Zhang 
969797317bSBarry Smith   if (a->idiagvalid) {
979797317bSBarry Smith     if (values) *values = a->idiag;
989797317bSBarry Smith     PetscFunctionReturn(0);
999797317bSBarry Smith   }
1009566063dSJacob Faibussowitsch   PetscCall(MatMarkDiagonal_SeqBAIJ(A));
101b01c7715SBarry Smith   diag_offset = a->diag;
102b01c7715SBarry Smith   if (!a->idiag) {
1039566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs2*mbs,&a->idiag));
1049566063dSJacob Faibussowitsch     PetscCall(PetscLogObjectMemory((PetscObject)A,bs2*mbs*sizeof(PetscScalar)));
105b01c7715SBarry Smith   }
106b01c7715SBarry Smith   diag  = a->idiag;
107bbead8a2SBarry Smith   if (values) *values = a->idiag;
108b01c7715SBarry Smith   /* factor and invert each block */
109521d7252SBarry Smith   switch (bs) {
110ab040260SJed Brown   case 1:
111ab040260SJed Brown     for (i=0; i<mbs; i++) {
112ab040260SJed Brown       odiag    = v + 1*diag_offset[i];
113ab040260SJed Brown       diag[0]  = odiag[0];
114ec1892c8SHong Zhang 
115ec1892c8SHong Zhang       if (PetscAbsScalar(diag[0] + shift) < PETSC_MACHINE_EPSILON) {
116ec1892c8SHong Zhang         if (allowzeropivot) {
1177b6c816cSBarry Smith           A->factorerrortype             = MAT_FACTOR_NUMERIC_ZEROPIVOT;
1187b6c816cSBarry Smith           A->factorerror_zeropivot_value = PetscAbsScalar(diag[0]);
1197b6c816cSBarry Smith           A->factorerror_zeropivot_row   = i;
1209566063dSJacob Faibussowitsch           PetscCall(PetscInfo(A,"Zero pivot, row %" PetscInt_FMT "\n",i));
12198921bdaSJacob Faibussowitsch         } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_MAT_LU_ZRPVT,"Zero pivot, row %" PetscInt_FMT " pivot value %g tolerance %g",i,(double)PetscAbsScalar(diag[0]),(double)PETSC_MACHINE_EPSILON);
122ec1892c8SHong Zhang       }
123ec1892c8SHong Zhang 
124d4a378daSJed Brown       diag[0]  = (PetscScalar)1.0 / (diag[0] + shift);
125ab040260SJed Brown       diag    += 1;
126ab040260SJed Brown     }
127ab040260SJed Brown     break;
128b01c7715SBarry Smith   case 2:
129b01c7715SBarry Smith     for (i=0; i<mbs; i++) {
130b01c7715SBarry Smith       odiag    = v + 4*diag_offset[i];
131b01c7715SBarry Smith       diag[0]  = odiag[0]; diag[1] = odiag[1]; diag[2] = odiag[2]; diag[3] = odiag[3];
1329566063dSJacob Faibussowitsch       PetscCall(PetscKernel_A_gets_inverse_A_2(diag,shift,allowzeropivot,&zeropivotdetected));
1337b6c816cSBarry Smith       if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT;
134b01c7715SBarry Smith       diag    += 4;
135b01c7715SBarry Smith     }
136b01c7715SBarry Smith     break;
137b01c7715SBarry Smith   case 3:
138b01c7715SBarry Smith     for (i=0; i<mbs; i++) {
139b01c7715SBarry Smith       odiag    = v + 9*diag_offset[i];
140b01c7715SBarry Smith       diag[0]  = odiag[0]; diag[1] = odiag[1]; diag[2] = odiag[2]; diag[3] = odiag[3];
141b01c7715SBarry Smith       diag[4]  = odiag[4]; diag[5] = odiag[5]; diag[6] = odiag[6]; diag[7] = odiag[7];
142b01c7715SBarry Smith       diag[8]  = odiag[8];
1439566063dSJacob Faibussowitsch       PetscCall(PetscKernel_A_gets_inverse_A_3(diag,shift,allowzeropivot,&zeropivotdetected));
1447b6c816cSBarry Smith       if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT;
145b01c7715SBarry Smith       diag    += 9;
146b01c7715SBarry Smith     }
147b01c7715SBarry Smith     break;
148b01c7715SBarry Smith   case 4:
149b01c7715SBarry Smith     for (i=0; i<mbs; i++) {
150b01c7715SBarry Smith       odiag  = v + 16*diag_offset[i];
1519566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(diag,odiag,16));
1529566063dSJacob Faibussowitsch       PetscCall(PetscKernel_A_gets_inverse_A_4(diag,shift,allowzeropivot,&zeropivotdetected));
1537b6c816cSBarry Smith       if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT;
154b01c7715SBarry Smith       diag  += 16;
155b01c7715SBarry Smith     }
156b01c7715SBarry Smith     break;
157b01c7715SBarry Smith   case 5:
158b01c7715SBarry Smith     for (i=0; i<mbs; i++) {
159b01c7715SBarry Smith       odiag  = v + 25*diag_offset[i];
1609566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(diag,odiag,25));
1619566063dSJacob Faibussowitsch       PetscCall(PetscKernel_A_gets_inverse_A_5(diag,ipvt,work,shift,allowzeropivot,&zeropivotdetected));
1627b6c816cSBarry Smith       if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT;
163b01c7715SBarry Smith       diag  += 25;
164b01c7715SBarry Smith     }
165b01c7715SBarry Smith     break;
166d49b2adcSBarry Smith   case 6:
167d49b2adcSBarry Smith     for (i=0; i<mbs; i++) {
168d49b2adcSBarry Smith       odiag  = v + 36*diag_offset[i];
1699566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(diag,odiag,36));
1709566063dSJacob Faibussowitsch       PetscCall(PetscKernel_A_gets_inverse_A_6(diag,shift,allowzeropivot,&zeropivotdetected));
1717b6c816cSBarry Smith       if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT;
172d49b2adcSBarry Smith       diag  += 36;
173d49b2adcSBarry Smith     }
174d49b2adcSBarry Smith     break;
175de80f912SBarry Smith   case 7:
176de80f912SBarry Smith     for (i=0; i<mbs; i++) {
177de80f912SBarry Smith       odiag  = v + 49*diag_offset[i];
1789566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(diag,odiag,49));
1799566063dSJacob Faibussowitsch       PetscCall(PetscKernel_A_gets_inverse_A_7(diag,shift,allowzeropivot,&zeropivotdetected));
1807b6c816cSBarry Smith       if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT;
181de80f912SBarry Smith       diag  += 49;
182de80f912SBarry Smith     }
183de80f912SBarry Smith     break;
184b01c7715SBarry Smith   default:
1859566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(bs,&v_work,bs,&v_pivots));
186de80f912SBarry Smith     for (i=0; i<mbs; i++) {
187de80f912SBarry Smith       odiag  = v + bs2*diag_offset[i];
1889566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(diag,odiag,bs2));
1899566063dSJacob Faibussowitsch       PetscCall(PetscKernel_A_gets_inverse_A(bs,diag,v_pivots,v_work,allowzeropivot,&zeropivotdetected));
1907b6c816cSBarry Smith       if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT;
191de80f912SBarry Smith       diag  += bs2;
192de80f912SBarry Smith     }
1939566063dSJacob Faibussowitsch     PetscCall(PetscFree2(v_work,v_pivots));
194b01c7715SBarry Smith   }
195b01c7715SBarry Smith   a->idiagvalid = PETSC_TRUE;
196b01c7715SBarry Smith   PetscFunctionReturn(0);
197b01c7715SBarry Smith }
198b01c7715SBarry Smith 
199e48d15efSToby Isaac PetscErrorCode MatSOR_SeqBAIJ(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2006d3beeddSMatthew Knepley {
2016d3beeddSMatthew Knepley   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
202e48d15efSToby Isaac   PetscScalar       *x,*work,*w,*workt,*t;
203e48d15efSToby Isaac   const MatScalar   *v,*aa = a->a, *idiag;
204e48d15efSToby Isaac   const PetscScalar *b,*xb;
2055455b99fSToby Isaac   PetscScalar       s[7], xw[7]={0}; /* avoid some compilers thinking xw is uninitialized */
206e48d15efSToby Isaac   PetscInt          m = a->mbs,i,i2,nz,bs = A->rmap->bs,bs2 = bs*bs,k,j,idx,it;
207c1ac3661SBarry Smith   const PetscInt    *diag,*ai = a->i,*aj = a->j,*vi;
208b01c7715SBarry Smith 
209b01c7715SBarry Smith   PetscFunctionBegin;
210b01c7715SBarry Smith   its = its*lits;
2115f80ce2aSJacob Faibussowitsch   PetscCheck(!(flag & SOR_EISENSTAT),PETSC_COMM_SELF,PETSC_ERR_SUP,"No support yet for Eisenstat");
2125f80ce2aSJacob Faibussowitsch   PetscCheck(its > 0,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %" PetscInt_FMT " and local its %" PetscInt_FMT " both positive",its,lits);
2135f80ce2aSJacob Faibussowitsch   PetscCheck(!fshift,PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for diagonal shift");
2145f80ce2aSJacob Faibussowitsch   PetscCheck(omega == 1.0,PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for non-trivial relaxation factor");
2155f80ce2aSJacob Faibussowitsch   PetscCheck(!(flag & SOR_APPLY_UPPER) && !(flag & SOR_APPLY_LOWER),PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for applying upper or lower triangular parts");
216b01c7715SBarry Smith 
2179566063dSJacob Faibussowitsch   if (!a->idiagvalid) PetscCall(MatInvertBlockDiagonal(A,NULL));
218b01c7715SBarry Smith 
219b2ec919aSToby Isaac   if (!m) PetscFunctionReturn(0);
220b01c7715SBarry Smith   diag  = a->diag;
221b01c7715SBarry Smith   idiag = a->idiag;
222de80f912SBarry Smith   k    = PetscMax(A->rmap->n,A->cmap->n);
223e48d15efSToby Isaac   if (!a->mult_work) {
2249566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(k+1,&a->mult_work));
225de80f912SBarry Smith   }
2263475c22fSBarry Smith   if (!a->sor_workt) {
2279566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(k,&a->sor_workt));
228de80f912SBarry Smith   }
229de80f912SBarry Smith   if (!a->sor_work) {
2309566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs,&a->sor_work));
231de80f912SBarry Smith   }
2323475c22fSBarry Smith   work = a->mult_work;
2333475c22fSBarry Smith   t    = a->sor_workt;
234de80f912SBarry Smith   w    = a->sor_work;
235de80f912SBarry Smith 
2369566063dSJacob Faibussowitsch   PetscCall(VecGetArray(xx,&x));
2379566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(bb,&b));
238de80f912SBarry Smith 
239de80f912SBarry Smith   if (flag & SOR_ZERO_INITIAL_GUESS) {
240de80f912SBarry Smith     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) {
241e48d15efSToby Isaac       switch (bs) {
242e48d15efSToby Isaac       case 1:
243e48d15efSToby Isaac         PetscKernel_v_gets_A_times_w_1(x,idiag,b);
244e48d15efSToby Isaac         t[0] = b[0];
245e48d15efSToby Isaac         i2     = 1;
246e48d15efSToby Isaac         idiag += 1;
247e48d15efSToby Isaac         for (i=1; i<m; i++) {
248e48d15efSToby Isaac           v  = aa + ai[i];
249e48d15efSToby Isaac           vi = aj + ai[i];
250e48d15efSToby Isaac           nz = diag[i] - ai[i];
251e48d15efSToby Isaac           s[0] = b[i2];
252e48d15efSToby Isaac           for (j=0; j<nz; j++) {
253e48d15efSToby Isaac             xw[0] = x[vi[j]];
254e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_1(s,(v+j),xw);
255e48d15efSToby Isaac           }
256e48d15efSToby Isaac           t[i2] = s[0];
257e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_1(xw,idiag,s);
258e48d15efSToby Isaac           x[i2]  = xw[0];
259e48d15efSToby Isaac           idiag += 1;
260e48d15efSToby Isaac           i2    += 1;
261e48d15efSToby Isaac         }
262e48d15efSToby Isaac         break;
263e48d15efSToby Isaac       case 2:
264e48d15efSToby Isaac         PetscKernel_v_gets_A_times_w_2(x,idiag,b);
265e48d15efSToby Isaac         t[0] = b[0]; t[1] = b[1];
266e48d15efSToby Isaac         i2     = 2;
267e48d15efSToby Isaac         idiag += 4;
268e48d15efSToby Isaac         for (i=1; i<m; i++) {
269e48d15efSToby Isaac           v  = aa + 4*ai[i];
270e48d15efSToby Isaac           vi = aj + ai[i];
271e48d15efSToby Isaac           nz = diag[i] - ai[i];
272e48d15efSToby Isaac           s[0] = b[i2]; s[1] = b[i2+1];
273e48d15efSToby Isaac           for (j=0; j<nz; j++) {
274e48d15efSToby Isaac             idx = 2*vi[j];
275e48d15efSToby Isaac             it  = 4*j;
276e48d15efSToby Isaac             xw[0] = x[idx]; xw[1] = x[1+idx];
277e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_2(s,(v+it),xw);
278e48d15efSToby Isaac           }
279e48d15efSToby Isaac           t[i2] = s[0]; t[i2+1] = s[1];
280e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_2(xw,idiag,s);
281e48d15efSToby Isaac           x[i2]   = xw[0]; x[i2+1] = xw[1];
282e48d15efSToby Isaac           idiag  += 4;
283e48d15efSToby Isaac           i2     += 2;
284e48d15efSToby Isaac         }
285e48d15efSToby Isaac         break;
286e48d15efSToby Isaac       case 3:
287e48d15efSToby Isaac         PetscKernel_v_gets_A_times_w_3(x,idiag,b);
288e48d15efSToby Isaac         t[0] = b[0]; t[1] = b[1]; t[2] = b[2];
289e48d15efSToby Isaac         i2     = 3;
290e48d15efSToby Isaac         idiag += 9;
291e48d15efSToby Isaac         for (i=1; i<m; i++) {
292e48d15efSToby Isaac           v  = aa + 9*ai[i];
293e48d15efSToby Isaac           vi = aj + ai[i];
294e48d15efSToby Isaac           nz = diag[i] - ai[i];
295e48d15efSToby Isaac           s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2];
296e48d15efSToby Isaac           while (nz--) {
297e48d15efSToby Isaac             idx = 3*(*vi++);
298e48d15efSToby Isaac             xw[0] = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx];
299e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_3(s,v,xw);
300e48d15efSToby Isaac             v  += 9;
301e48d15efSToby Isaac           }
302e48d15efSToby Isaac           t[i2] = s[0]; t[i2+1] = s[1]; t[i2+2] = s[2];
303e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_3(xw,idiag,s);
304e48d15efSToby Isaac           x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2];
305e48d15efSToby Isaac           idiag  += 9;
306e48d15efSToby Isaac           i2     += 3;
307e48d15efSToby Isaac         }
308e48d15efSToby Isaac         break;
309e48d15efSToby Isaac       case 4:
310e48d15efSToby Isaac         PetscKernel_v_gets_A_times_w_4(x,idiag,b);
311e48d15efSToby Isaac         t[0] = b[0]; t[1] = b[1]; t[2] = b[2]; t[3] = b[3];
312e48d15efSToby Isaac         i2     = 4;
313e48d15efSToby Isaac         idiag += 16;
314e48d15efSToby Isaac         for (i=1; i<m; i++) {
315e48d15efSToby Isaac           v  = aa + 16*ai[i];
316e48d15efSToby Isaac           vi = aj + ai[i];
317e48d15efSToby Isaac           nz = diag[i] - ai[i];
318e48d15efSToby Isaac           s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2]; s[3] = b[i2+3];
319e48d15efSToby Isaac           while (nz--) {
320e48d15efSToby Isaac             idx = 4*(*vi++);
321e48d15efSToby Isaac             xw[0]  = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; xw[3] = x[3+idx];
322e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_4(s,v,xw);
323e48d15efSToby Isaac             v  += 16;
324e48d15efSToby Isaac           }
325e48d15efSToby Isaac           t[i2] = s[0]; t[i2+1] = s[1]; t[i2+2] = s[2]; t[i2 + 3] = s[3];
326e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_4(xw,idiag,s);
327e48d15efSToby Isaac           x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2]; x[i2+3] = xw[3];
328e48d15efSToby Isaac           idiag  += 16;
329e48d15efSToby Isaac           i2     += 4;
330e48d15efSToby Isaac         }
331e48d15efSToby Isaac         break;
332e48d15efSToby Isaac       case 5:
333e48d15efSToby Isaac         PetscKernel_v_gets_A_times_w_5(x,idiag,b);
334e48d15efSToby Isaac         t[0] = b[0]; t[1] = b[1]; t[2] = b[2]; t[3] = b[3]; t[4] = b[4];
335e48d15efSToby Isaac         i2     = 5;
336e48d15efSToby Isaac         idiag += 25;
337e48d15efSToby Isaac         for (i=1; i<m; i++) {
338e48d15efSToby Isaac           v  = aa + 25*ai[i];
339e48d15efSToby Isaac           vi = aj + ai[i];
340e48d15efSToby Isaac           nz = diag[i] - ai[i];
341e48d15efSToby Isaac           s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2]; s[3] = b[i2+3]; s[4] = b[i2+4];
342e48d15efSToby Isaac           while (nz--) {
343e48d15efSToby Isaac             idx = 5*(*vi++);
344e48d15efSToby Isaac             xw[0]  = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; xw[3] = x[3+idx]; xw[4] = x[4+idx];
345e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_5(s,v,xw);
346e48d15efSToby Isaac             v  += 25;
347e48d15efSToby Isaac           }
348e48d15efSToby Isaac           t[i2] = s[0]; t[i2+1] = s[1]; t[i2+2] = s[2]; t[i2+3] = s[3]; t[i2+4] = s[4];
349e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_5(xw,idiag,s);
350e48d15efSToby Isaac           x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2]; x[i2+3] = xw[3]; x[i2+4] = xw[4];
351e48d15efSToby Isaac           idiag  += 25;
352e48d15efSToby Isaac           i2     += 5;
353e48d15efSToby Isaac         }
354e48d15efSToby Isaac         break;
355e48d15efSToby Isaac       case 6:
356e48d15efSToby Isaac         PetscKernel_v_gets_A_times_w_6(x,idiag,b);
357e48d15efSToby Isaac         t[0] = b[0]; t[1] = b[1]; t[2] = b[2]; t[3] = b[3]; t[4] = b[4]; t[5] = b[5];
358e48d15efSToby Isaac         i2     = 6;
359e48d15efSToby Isaac         idiag += 36;
360e48d15efSToby Isaac         for (i=1; i<m; i++) {
361e48d15efSToby Isaac           v  = aa + 36*ai[i];
362e48d15efSToby Isaac           vi = aj + ai[i];
363e48d15efSToby Isaac           nz = diag[i] - ai[i];
364e48d15efSToby Isaac           s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2]; s[3] = b[i2+3]; s[4] = b[i2+4]; s[5] = b[i2+5];
365e48d15efSToby Isaac           while (nz--) {
366e48d15efSToby Isaac             idx = 6*(*vi++);
367e48d15efSToby Isaac             xw[0] = x[idx];   xw[1] = x[1+idx]; xw[2] = x[2+idx];
368e48d15efSToby Isaac             xw[3] = x[3+idx]; xw[4] = x[4+idx]; xw[5] = x[5+idx];
369e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_6(s,v,xw);
370e48d15efSToby Isaac             v  += 36;
371e48d15efSToby Isaac           }
372e48d15efSToby Isaac           t[i2]   = s[0]; t[i2+1] = s[1]; t[i2+2] = s[2];
373e48d15efSToby Isaac           t[i2+3] = s[3]; t[i2+4] = s[4]; t[i2+5] = s[5];
374e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_6(xw,idiag,s);
375e48d15efSToby Isaac           x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2]; x[i2+3] = xw[3]; x[i2+4] = xw[4]; x[i2+5] = xw[5];
376e48d15efSToby Isaac           idiag  += 36;
377e48d15efSToby Isaac           i2     += 6;
378e48d15efSToby Isaac         }
379e48d15efSToby Isaac         break;
380e48d15efSToby Isaac       case 7:
381e48d15efSToby Isaac         PetscKernel_v_gets_A_times_w_7(x,idiag,b);
382e48d15efSToby Isaac         t[0] = b[0]; t[1] = b[1]; t[2] = b[2];
383e48d15efSToby Isaac         t[3] = b[3]; t[4] = b[4]; t[5] = b[5]; t[6] = b[6];
384e48d15efSToby Isaac         i2     = 7;
385e48d15efSToby Isaac         idiag += 49;
386e48d15efSToby Isaac         for (i=1; i<m; i++) {
387e48d15efSToby Isaac           v  = aa + 49*ai[i];
388e48d15efSToby Isaac           vi = aj + ai[i];
389e48d15efSToby Isaac           nz = diag[i] - ai[i];
390e48d15efSToby Isaac           s[0] = b[i2];   s[1] = b[i2+1]; s[2] = b[i2+2];
391e48d15efSToby Isaac           s[3] = b[i2+3]; s[4] = b[i2+4]; s[5] = b[i2+5]; s[6] = b[i2+6];
392e48d15efSToby Isaac           while (nz--) {
393e48d15efSToby Isaac             idx = 7*(*vi++);
394e48d15efSToby Isaac             xw[0] = x[idx];   xw[1] = x[1+idx]; xw[2] = x[2+idx];
395e48d15efSToby Isaac             xw[3] = x[3+idx]; xw[4] = x[4+idx]; xw[5] = x[5+idx]; xw[6] = x[6+idx];
396e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_7(s,v,xw);
397e48d15efSToby Isaac             v  += 49;
398e48d15efSToby Isaac           }
399e48d15efSToby Isaac           t[i2]   = s[0]; t[i2+1] = s[1]; t[i2+2] = s[2];
400e48d15efSToby Isaac           t[i2+3] = s[3]; t[i2+4] = s[4]; t[i2+5] = s[5]; t[i2+6] = s[6];
401e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_7(xw,idiag,s);
402e48d15efSToby Isaac           x[i2] =   xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2];
403e48d15efSToby Isaac           x[i2+3] = xw[3]; x[i2+4] = xw[4]; x[i2+5] = xw[5]; x[i2+6] = xw[6];
404e48d15efSToby Isaac           idiag  += 49;
405e48d15efSToby Isaac           i2     += 7;
406e48d15efSToby Isaac         }
407e48d15efSToby Isaac         break;
408e48d15efSToby Isaac       default:
40996b95a6bSBarry Smith         PetscKernel_w_gets_Ar_times_v(bs,bs,b,idiag,x);
4109566063dSJacob Faibussowitsch         PetscCall(PetscArraycpy(t,b,bs));
411de80f912SBarry Smith         i2     = bs;
412de80f912SBarry Smith         idiag += bs2;
413de80f912SBarry Smith         for (i=1; i<m; i++) {
414de80f912SBarry Smith           v  = aa + bs2*ai[i];
415de80f912SBarry Smith           vi = aj + ai[i];
416de80f912SBarry Smith           nz = diag[i] - ai[i];
417de80f912SBarry Smith 
4189566063dSJacob Faibussowitsch           PetscCall(PetscArraycpy(w,b+i2,bs));
419de80f912SBarry Smith           /* copy all rows of x that are needed into contiguous space */
420de80f912SBarry Smith           workt = work;
421de80f912SBarry Smith           for (j=0; j<nz; j++) {
4229566063dSJacob Faibussowitsch             PetscCall(PetscArraycpy(workt,x + bs*(*vi++),bs));
423de80f912SBarry Smith             workt += bs;
424de80f912SBarry Smith           }
42596b95a6bSBarry Smith           PetscKernel_w_gets_w_minus_Ar_times_v(bs,bs*nz,w,v,work);
4269566063dSJacob Faibussowitsch           PetscCall(PetscArraycpy(t+i2,w,bs));
42796b95a6bSBarry Smith           PetscKernel_w_gets_Ar_times_v(bs,bs,w,idiag,x+i2);
428de80f912SBarry Smith 
429de80f912SBarry Smith           idiag += bs2;
430de80f912SBarry Smith           i2    += bs;
431de80f912SBarry Smith         }
432e48d15efSToby Isaac         break;
433e48d15efSToby Isaac       }
434de80f912SBarry Smith       /* for logging purposes assume number of nonzero in lower half is 1/2 of total */
4359566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(1.0*bs2*a->nz));
436e48d15efSToby Isaac       xb = t;
437de80f912SBarry Smith     }
438e48d15efSToby Isaac     else xb = b;
439de80f912SBarry Smith     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
440e48d15efSToby Isaac       idiag = a->idiag+bs2*(a->mbs-1);
441e48d15efSToby Isaac       i2 = bs * (m-1);
442e48d15efSToby Isaac       switch (bs) {
443e48d15efSToby Isaac       case 1:
444e48d15efSToby Isaac         s[0]  = xb[i2];
445e48d15efSToby Isaac         PetscKernel_v_gets_A_times_w_1(xw,idiag,s);
446e48d15efSToby Isaac         x[i2] = xw[0];
447e48d15efSToby Isaac         i2   -= 1;
448e48d15efSToby Isaac         for (i=m-2; i>=0; i--) {
449e48d15efSToby Isaac           v  = aa + (diag[i]+1);
450e48d15efSToby Isaac           vi = aj + diag[i] + 1;
451e48d15efSToby Isaac           nz = ai[i+1] - diag[i] - 1;
452e48d15efSToby Isaac           s[0] = xb[i2];
453e48d15efSToby Isaac           for (j=0; j<nz; j++) {
454e48d15efSToby Isaac             xw[0] = x[vi[j]];
455e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_1(s,(v+j),xw);
456e48d15efSToby Isaac           }
457e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_1(xw,idiag,s);
458e48d15efSToby Isaac           x[i2]  = xw[0];
459e48d15efSToby Isaac           idiag -= 1;
460e48d15efSToby Isaac           i2    -= 1;
461e48d15efSToby Isaac         }
462e48d15efSToby Isaac         break;
463e48d15efSToby Isaac       case 2:
464e48d15efSToby Isaac         s[0]  = xb[i2]; s[1] = xb[i2+1];
465e48d15efSToby Isaac         PetscKernel_v_gets_A_times_w_2(xw,idiag,s);
466e48d15efSToby Isaac         x[i2] = xw[0]; x[i2+1] = xw[1];
467e48d15efSToby Isaac         i2    -= 2;
468e48d15efSToby Isaac         idiag -= 4;
469e48d15efSToby Isaac         for (i=m-2; i>=0; i--) {
470e48d15efSToby Isaac           v  = aa + 4*(diag[i] + 1);
471e48d15efSToby Isaac           vi = aj + diag[i] + 1;
472e48d15efSToby Isaac           nz = ai[i+1] - diag[i] - 1;
473e48d15efSToby Isaac           s[0] = xb[i2]; s[1] = xb[i2+1];
474e48d15efSToby Isaac           for (j=0; j<nz; j++) {
475e48d15efSToby Isaac             idx = 2*vi[j];
476e48d15efSToby Isaac             it  = 4*j;
477e48d15efSToby Isaac             xw[0] = x[idx]; xw[1] = x[1+idx];
478e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_2(s,(v+it),xw);
479e48d15efSToby Isaac           }
480e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_2(xw,idiag,s);
481e48d15efSToby Isaac           x[i2]   = xw[0]; x[i2+1] = xw[1];
482e48d15efSToby Isaac           idiag  -= 4;
483e48d15efSToby Isaac           i2     -= 2;
484e48d15efSToby Isaac         }
485e48d15efSToby Isaac         break;
486e48d15efSToby Isaac       case 3:
487e48d15efSToby Isaac         s[0]  = xb[i2]; s[1] = xb[i2+1]; s[2] = xb[i2+2];
488e48d15efSToby Isaac         PetscKernel_v_gets_A_times_w_3(xw,idiag,s);
489e48d15efSToby Isaac         x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2];
490e48d15efSToby Isaac         i2    -= 3;
491e48d15efSToby Isaac         idiag -= 9;
492e48d15efSToby Isaac         for (i=m-2; i>=0; i--) {
493e48d15efSToby Isaac           v  = aa + 9*(diag[i]+1);
494e48d15efSToby Isaac           vi = aj + diag[i] + 1;
495e48d15efSToby Isaac           nz = ai[i+1] - diag[i] - 1;
496e48d15efSToby Isaac           s[0] = xb[i2]; s[1] = xb[i2+1]; s[2] = xb[i2+2];
497e48d15efSToby Isaac           while (nz--) {
498e48d15efSToby Isaac             idx = 3*(*vi++);
499e48d15efSToby Isaac             xw[0] = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx];
500e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_3(s,v,xw);
501e48d15efSToby Isaac             v  += 9;
502e48d15efSToby Isaac           }
503e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_3(xw,idiag,s);
504e48d15efSToby Isaac           x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2];
505e48d15efSToby Isaac           idiag  -= 9;
506e48d15efSToby Isaac           i2     -= 3;
507e48d15efSToby Isaac         }
508e48d15efSToby Isaac         break;
509e48d15efSToby Isaac       case 4:
510e48d15efSToby Isaac         s[0]  = xb[i2]; s[1] = xb[i2+1]; s[2] = xb[i2+2]; s[3] = xb[i2+3];
511e48d15efSToby Isaac         PetscKernel_v_gets_A_times_w_4(xw,idiag,s);
512e48d15efSToby Isaac         x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2]; x[i2+3] = xw[3];
513e48d15efSToby Isaac         i2    -= 4;
514e48d15efSToby Isaac         idiag -= 16;
515e48d15efSToby Isaac         for (i=m-2; i>=0; i--) {
516e48d15efSToby Isaac           v  = aa + 16*(diag[i]+1);
517e48d15efSToby Isaac           vi = aj + diag[i] + 1;
518e48d15efSToby Isaac           nz = ai[i+1] - diag[i] - 1;
519e48d15efSToby Isaac           s[0] = xb[i2]; s[1] = xb[i2+1]; s[2] = xb[i2+2]; s[3] = xb[i2+3];
520e48d15efSToby Isaac           while (nz--) {
521e48d15efSToby Isaac             idx = 4*(*vi++);
522e48d15efSToby Isaac             xw[0]  = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; xw[3] = x[3+idx];
523e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_4(s,v,xw);
524e48d15efSToby Isaac             v  += 16;
525e48d15efSToby Isaac           }
526e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_4(xw,idiag,s);
527e48d15efSToby Isaac           x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2]; x[i2+3] = xw[3];
528e48d15efSToby Isaac           idiag  -= 16;
529e48d15efSToby Isaac           i2     -= 4;
530e48d15efSToby Isaac         }
531e48d15efSToby Isaac         break;
532e48d15efSToby Isaac       case 5:
533e48d15efSToby Isaac         s[0]  = xb[i2]; s[1] = xb[i2+1]; s[2] = xb[i2+2]; s[3] = xb[i2+3]; s[4] = xb[i2+4];
534e48d15efSToby Isaac         PetscKernel_v_gets_A_times_w_5(xw,idiag,s);
535e48d15efSToby Isaac         x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2]; x[i2+3] = xw[3]; x[i2+4] = xw[4];
536e48d15efSToby Isaac         i2    -= 5;
537e48d15efSToby Isaac         idiag -= 25;
538e48d15efSToby Isaac         for (i=m-2; i>=0; i--) {
539e48d15efSToby Isaac           v  = aa + 25*(diag[i]+1);
540e48d15efSToby Isaac           vi = aj + diag[i] + 1;
541e48d15efSToby Isaac           nz = ai[i+1] - diag[i] - 1;
542e48d15efSToby Isaac           s[0] = xb[i2]; s[1] = xb[i2+1]; s[2] = xb[i2+2]; s[3] = xb[i2+3]; s[4] = xb[i2+4];
543e48d15efSToby Isaac           while (nz--) {
544e48d15efSToby Isaac             idx = 5*(*vi++);
545e48d15efSToby Isaac             xw[0]  = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; xw[3] = x[3+idx]; xw[4] = x[4+idx];
546e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_5(s,v,xw);
547e48d15efSToby Isaac             v  += 25;
548e48d15efSToby Isaac           }
549e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_5(xw,idiag,s);
550e48d15efSToby Isaac           x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2]; x[i2+3] = xw[3]; x[i2+4] = xw[4];
551e48d15efSToby Isaac           idiag  -= 25;
552e48d15efSToby Isaac           i2     -= 5;
553e48d15efSToby Isaac         }
554e48d15efSToby Isaac         break;
555e48d15efSToby Isaac       case 6:
556e48d15efSToby Isaac         s[0]  = xb[i2]; s[1] = xb[i2+1]; s[2] = xb[i2+2]; s[3] = xb[i2+3]; s[4] = xb[i2+4]; s[5] = xb[i2+5];
557e48d15efSToby Isaac         PetscKernel_v_gets_A_times_w_6(xw,idiag,s);
558e48d15efSToby Isaac         x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2]; x[i2+3] = xw[3]; x[i2+4] = xw[4]; x[i2+5] = xw[5];
559e48d15efSToby Isaac         i2    -= 6;
560e48d15efSToby Isaac         idiag -= 36;
561e48d15efSToby Isaac         for (i=m-2; i>=0; i--) {
562e48d15efSToby Isaac           v  = aa + 36*(diag[i]+1);
563e48d15efSToby Isaac           vi = aj + diag[i] + 1;
564e48d15efSToby Isaac           nz = ai[i+1] - diag[i] - 1;
565e48d15efSToby Isaac           s[0] = xb[i2]; s[1] = xb[i2+1]; s[2] = xb[i2+2]; s[3] = xb[i2+3]; s[4] = xb[i2+4]; s[5] = xb[i2+5];
566e48d15efSToby Isaac           while (nz--) {
567e48d15efSToby Isaac             idx = 6*(*vi++);
568e48d15efSToby Isaac             xw[0] = x[idx];   xw[1] = x[1+idx]; xw[2] = x[2+idx];
569e48d15efSToby Isaac             xw[3] = x[3+idx]; xw[4] = x[4+idx]; xw[5] = x[5+idx];
570e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_6(s,v,xw);
571e48d15efSToby Isaac             v  += 36;
572e48d15efSToby Isaac           }
573e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_6(xw,idiag,s);
574e48d15efSToby Isaac           x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2]; x[i2+3] = xw[3]; x[i2+4] = xw[4]; x[i2+5] = xw[5];
575e48d15efSToby Isaac           idiag  -= 36;
576e48d15efSToby Isaac           i2     -= 6;
577e48d15efSToby Isaac         }
578e48d15efSToby Isaac         break;
579e48d15efSToby Isaac       case 7:
580e48d15efSToby Isaac         s[0] = xb[i2];   s[1] = xb[i2+1]; s[2] = xb[i2+2];
581e48d15efSToby Isaac         s[3] = xb[i2+3]; s[4] = xb[i2+4]; s[5] = xb[i2+5]; s[6] = xb[i2+6];
582e48d15efSToby Isaac         PetscKernel_v_gets_A_times_w_7(x,idiag,b);
583e48d15efSToby Isaac         x[i2]   = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2];
584e48d15efSToby Isaac         x[i2+3] = xw[3]; x[i2+4] = xw[4]; x[i2+5] = xw[5]; x[i2+6] = xw[6];
585e48d15efSToby Isaac         i2    -= 7;
586e48d15efSToby Isaac         idiag -= 49;
587e48d15efSToby Isaac         for (i=m-2; i>=0; i--) {
588e48d15efSToby Isaac           v  = aa + 49*(diag[i]+1);
589e48d15efSToby Isaac           vi = aj + diag[i] + 1;
590e48d15efSToby Isaac           nz = ai[i+1] - diag[i] - 1;
591e48d15efSToby Isaac           s[0] = xb[i2];   s[1] = xb[i2+1]; s[2] = xb[i2+2];
592e48d15efSToby Isaac           s[3] = xb[i2+3]; s[4] = xb[i2+4]; s[5] = xb[i2+5]; s[6] = xb[i2+6];
593e48d15efSToby Isaac           while (nz--) {
594e48d15efSToby Isaac             idx = 7*(*vi++);
595e48d15efSToby Isaac             xw[0] = x[idx];   xw[1] = x[1+idx]; xw[2] = x[2+idx];
596e48d15efSToby Isaac             xw[3] = x[3+idx]; xw[4] = x[4+idx]; xw[5] = x[5+idx]; xw[6] = x[6+idx];
597e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_7(s,v,xw);
598e48d15efSToby Isaac             v  += 49;
599e48d15efSToby Isaac           }
600e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_7(xw,idiag,s);
601e48d15efSToby Isaac           x[i2] =   xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2];
602e48d15efSToby Isaac           x[i2+3] = xw[3]; x[i2+4] = xw[4]; x[i2+5] = xw[5]; x[i2+6] = xw[6];
603e48d15efSToby Isaac           idiag  -= 49;
604e48d15efSToby Isaac           i2     -= 7;
605e48d15efSToby Isaac         }
606e48d15efSToby Isaac         break;
607e48d15efSToby Isaac       default:
6089566063dSJacob Faibussowitsch         PetscCall(PetscArraycpy(w,xb+i2,bs));
60996b95a6bSBarry Smith         PetscKernel_w_gets_Ar_times_v(bs,bs,w,idiag,x+i2);
610de80f912SBarry Smith         i2    -= bs;
611e48d15efSToby Isaac         idiag -= bs2;
612de80f912SBarry Smith         for (i=m-2; i>=0; i--) {
613de80f912SBarry Smith           v  = aa + bs2*(diag[i]+1);
614de80f912SBarry Smith           vi = aj + diag[i] + 1;
615de80f912SBarry Smith           nz = ai[i+1] - diag[i] - 1;
616de80f912SBarry Smith 
6179566063dSJacob Faibussowitsch           PetscCall(PetscArraycpy(w,xb+i2,bs));
618de80f912SBarry Smith           /* copy all rows of x that are needed into contiguous space */
619de80f912SBarry Smith           workt = work;
620de80f912SBarry Smith           for (j=0; j<nz; j++) {
6219566063dSJacob Faibussowitsch             PetscCall(PetscArraycpy(workt,x + bs*(*vi++),bs));
622de80f912SBarry Smith             workt += bs;
623de80f912SBarry Smith           }
62496b95a6bSBarry Smith           PetscKernel_w_gets_w_minus_Ar_times_v(bs,bs*nz,w,v,work);
62596b95a6bSBarry Smith           PetscKernel_w_gets_Ar_times_v(bs,bs,w,idiag,x+i2);
626e48d15efSToby Isaac 
627de80f912SBarry Smith           idiag -= bs2;
628de80f912SBarry Smith           i2    -= bs;
629de80f912SBarry Smith         }
630e48d15efSToby Isaac         break;
631e48d15efSToby Isaac       }
6329566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(1.0*bs2*(a->nz)));
633de80f912SBarry Smith     }
634e48d15efSToby Isaac     its--;
635e48d15efSToby Isaac   }
636e48d15efSToby Isaac   while (its--) {
637e48d15efSToby Isaac     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) {
638e48d15efSToby Isaac       idiag = a->idiag;
639e48d15efSToby Isaac       i2 = 0;
640e48d15efSToby Isaac       switch (bs) {
641e48d15efSToby Isaac       case 1:
642e48d15efSToby Isaac         for (i=0; i<m; i++) {
643e48d15efSToby Isaac           v  = aa + ai[i];
644e48d15efSToby Isaac           vi = aj + ai[i];
645e48d15efSToby Isaac           nz = ai[i+1] - ai[i];
646e48d15efSToby Isaac           s[0] = b[i2];
647e48d15efSToby Isaac           for (j=0; j<nz; j++) {
648e48d15efSToby Isaac             xw[0] = x[vi[j]];
649e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_1(s,(v+j),xw);
650e48d15efSToby Isaac           }
651e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_1(xw,idiag,s);
652e48d15efSToby Isaac           x[i2] += xw[0];
653e48d15efSToby Isaac           idiag += 1;
654e48d15efSToby Isaac           i2    += 1;
655e48d15efSToby Isaac         }
656e48d15efSToby Isaac         break;
657e48d15efSToby Isaac       case 2:
658e48d15efSToby Isaac         for (i=0; i<m; i++) {
659e48d15efSToby Isaac           v  = aa + 4*ai[i];
660e48d15efSToby Isaac           vi = aj + ai[i];
661e48d15efSToby Isaac           nz = ai[i+1] - ai[i];
662e48d15efSToby Isaac           s[0] = b[i2]; s[1] = b[i2+1];
663e48d15efSToby Isaac           for (j=0; j<nz; j++) {
664e48d15efSToby Isaac             idx = 2*vi[j];
665e48d15efSToby Isaac             it  = 4*j;
666e48d15efSToby Isaac             xw[0] = x[idx]; xw[1] = x[1+idx];
667e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_2(s,(v+it),xw);
668e48d15efSToby Isaac           }
669e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_2(xw,idiag,s);
670e48d15efSToby Isaac           x[i2]  += xw[0]; x[i2+1] += xw[1];
671e48d15efSToby Isaac           idiag  += 4;
672e48d15efSToby Isaac           i2     += 2;
673e48d15efSToby Isaac         }
674e48d15efSToby Isaac         break;
675e48d15efSToby Isaac       case 3:
676e48d15efSToby Isaac         for (i=0; i<m; i++) {
677e48d15efSToby Isaac           v  = aa + 9*ai[i];
678e48d15efSToby Isaac           vi = aj + ai[i];
679e48d15efSToby Isaac           nz = ai[i+1] - ai[i];
680e48d15efSToby Isaac           s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2];
681e48d15efSToby Isaac           while (nz--) {
682e48d15efSToby Isaac             idx = 3*(*vi++);
683e48d15efSToby Isaac             xw[0] = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx];
684e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_3(s,v,xw);
685e48d15efSToby Isaac             v  += 9;
686e48d15efSToby Isaac           }
687e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_3(xw,idiag,s);
688e48d15efSToby Isaac           x[i2] += xw[0]; x[i2+1] += xw[1]; x[i2+2] += xw[2];
689e48d15efSToby Isaac           idiag  += 9;
690e48d15efSToby Isaac           i2     += 3;
691e48d15efSToby Isaac         }
692e48d15efSToby Isaac         break;
693e48d15efSToby Isaac       case 4:
694e48d15efSToby Isaac         for (i=0; i<m; i++) {
695e48d15efSToby Isaac           v  = aa + 16*ai[i];
696e48d15efSToby Isaac           vi = aj + ai[i];
697e48d15efSToby Isaac           nz = ai[i+1] - ai[i];
698e48d15efSToby Isaac           s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2]; s[3] = b[i2+3];
699e48d15efSToby Isaac           while (nz--) {
700e48d15efSToby Isaac             idx = 4*(*vi++);
701e48d15efSToby Isaac             xw[0]  = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; xw[3] = x[3+idx];
702e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_4(s,v,xw);
703e48d15efSToby Isaac             v  += 16;
704e48d15efSToby Isaac           }
705e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_4(xw,idiag,s);
706e48d15efSToby Isaac           x[i2] += xw[0]; x[i2+1] += xw[1]; x[i2+2] += xw[2]; x[i2+3] += xw[3];
707e48d15efSToby Isaac           idiag  += 16;
708e48d15efSToby Isaac           i2     += 4;
709e48d15efSToby Isaac         }
710e48d15efSToby Isaac         break;
711e48d15efSToby Isaac       case 5:
712e48d15efSToby Isaac         for (i=0; i<m; i++) {
713e48d15efSToby Isaac           v  = aa + 25*ai[i];
714e48d15efSToby Isaac           vi = aj + ai[i];
715e48d15efSToby Isaac           nz = ai[i+1] - ai[i];
716e48d15efSToby Isaac           s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2]; s[3] = b[i2+3]; s[4] = b[i2+4];
717e48d15efSToby Isaac           while (nz--) {
718e48d15efSToby Isaac             idx = 5*(*vi++);
719e48d15efSToby Isaac             xw[0]  = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; xw[3] = x[3+idx]; xw[4] = x[4+idx];
720e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_5(s,v,xw);
721e48d15efSToby Isaac             v  += 25;
722e48d15efSToby Isaac           }
723e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_5(xw,idiag,s);
724e48d15efSToby Isaac           x[i2] += xw[0]; x[i2+1] += xw[1]; x[i2+2] += xw[2]; x[i2+3] += xw[3]; x[i2+4] += xw[4];
725e48d15efSToby Isaac           idiag  += 25;
726e48d15efSToby Isaac           i2     += 5;
727e48d15efSToby Isaac         }
728e48d15efSToby Isaac         break;
729e48d15efSToby Isaac       case 6:
730e48d15efSToby Isaac         for (i=0; i<m; i++) {
731e48d15efSToby Isaac           v  = aa + 36*ai[i];
732e48d15efSToby Isaac           vi = aj + ai[i];
733e48d15efSToby Isaac           nz = ai[i+1] - ai[i];
734e48d15efSToby Isaac           s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2]; s[3] = b[i2+3]; s[4] = b[i2+4]; s[5] = b[i2+5];
735e48d15efSToby Isaac           while (nz--) {
736e48d15efSToby Isaac             idx = 6*(*vi++);
737e48d15efSToby Isaac             xw[0] = x[idx];   xw[1] = x[1+idx]; xw[2] = x[2+idx];
738e48d15efSToby Isaac             xw[3] = x[3+idx]; xw[4] = x[4+idx]; xw[5] = x[5+idx];
739e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_6(s,v,xw);
740e48d15efSToby Isaac             v  += 36;
741e48d15efSToby Isaac           }
742e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_6(xw,idiag,s);
743e48d15efSToby Isaac           x[i2] += xw[0]; x[i2+1] += xw[1]; x[i2+2] += xw[2];
744e48d15efSToby Isaac           x[i2+3] += xw[3]; x[i2+4] += xw[4]; x[i2+5] += xw[5];
745e48d15efSToby Isaac           idiag  += 36;
746e48d15efSToby Isaac           i2     += 6;
747e48d15efSToby Isaac         }
748e48d15efSToby Isaac         break;
749e48d15efSToby Isaac       case 7:
750e48d15efSToby Isaac         for (i=0; i<m; i++) {
751e48d15efSToby Isaac           v  = aa + 49*ai[i];
752e48d15efSToby Isaac           vi = aj + ai[i];
753e48d15efSToby Isaac           nz = ai[i+1] - ai[i];
754e48d15efSToby Isaac           s[0] = b[i2];   s[1] = b[i2+1]; s[2] = b[i2+2];
755e48d15efSToby Isaac           s[3] = b[i2+3]; s[4] = b[i2+4]; s[5] = b[i2+5]; s[6] = b[i2+6];
756e48d15efSToby Isaac           while (nz--) {
757e48d15efSToby Isaac             idx = 7*(*vi++);
758e48d15efSToby Isaac             xw[0] = x[idx];   xw[1] = x[1+idx]; xw[2] = x[2+idx];
759e48d15efSToby Isaac             xw[3] = x[3+idx]; xw[4] = x[4+idx]; xw[5] = x[5+idx]; xw[6] = x[6+idx];
760e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_7(s,v,xw);
761e48d15efSToby Isaac             v  += 49;
762e48d15efSToby Isaac           }
763e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_7(xw,idiag,s);
764e48d15efSToby Isaac           x[i2]   += xw[0]; x[i2+1] += xw[1]; x[i2+2] += xw[2];
765e48d15efSToby Isaac           x[i2+3] += xw[3]; x[i2+4] += xw[4]; x[i2+5] += xw[5]; x[i2+6] += xw[6];
766e48d15efSToby Isaac           idiag  += 49;
767e48d15efSToby Isaac           i2     += 7;
768e48d15efSToby Isaac         }
769e48d15efSToby Isaac         break;
770e48d15efSToby Isaac       default:
771e48d15efSToby Isaac         for (i=0; i<m; i++) {
772e48d15efSToby Isaac           v  = aa + bs2*ai[i];
773e48d15efSToby Isaac           vi = aj + ai[i];
774e48d15efSToby Isaac           nz = ai[i+1] - ai[i];
775e48d15efSToby Isaac 
7769566063dSJacob Faibussowitsch           PetscCall(PetscArraycpy(w,b+i2,bs));
777e48d15efSToby Isaac           /* copy all rows of x that are needed into contiguous space */
778e48d15efSToby Isaac           workt = work;
779e48d15efSToby Isaac           for (j=0; j<nz; j++) {
7809566063dSJacob Faibussowitsch             PetscCall(PetscArraycpy(workt,x + bs*(*vi++),bs));
781e48d15efSToby Isaac             workt += bs;
782e48d15efSToby Isaac           }
783e48d15efSToby Isaac           PetscKernel_w_gets_w_minus_Ar_times_v(bs,bs*nz,w,v,work);
784e48d15efSToby Isaac           PetscKernel_w_gets_w_plus_Ar_times_v(bs,bs,w,idiag,x+i2);
785e48d15efSToby Isaac 
786e48d15efSToby Isaac           idiag += bs2;
787e48d15efSToby Isaac           i2    += bs;
788e48d15efSToby Isaac         }
789e48d15efSToby Isaac         break;
790e48d15efSToby Isaac       }
7919566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0*bs2*a->nz));
792e48d15efSToby Isaac     }
793e48d15efSToby Isaac     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
794e48d15efSToby Isaac       idiag = a->idiag+bs2*(a->mbs-1);
795e48d15efSToby Isaac       i2 = bs * (m-1);
796e48d15efSToby Isaac       switch (bs) {
797e48d15efSToby Isaac       case 1:
798e48d15efSToby Isaac         for (i=m-1; i>=0; i--) {
799e48d15efSToby Isaac           v  = aa + ai[i];
800e48d15efSToby Isaac           vi = aj + ai[i];
801e48d15efSToby Isaac           nz = ai[i+1] - ai[i];
802e48d15efSToby Isaac           s[0] = b[i2];
803e48d15efSToby Isaac           for (j=0; j<nz; j++) {
804e48d15efSToby Isaac             xw[0] = x[vi[j]];
805e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_1(s,(v+j),xw);
806e48d15efSToby Isaac           }
807e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_1(xw,idiag,s);
808e48d15efSToby Isaac           x[i2] += xw[0];
809e48d15efSToby Isaac           idiag -= 1;
810e48d15efSToby Isaac           i2    -= 1;
811e48d15efSToby Isaac         }
812e48d15efSToby Isaac         break;
813e48d15efSToby Isaac       case 2:
814e48d15efSToby Isaac         for (i=m-1; i>=0; i--) {
815e48d15efSToby Isaac           v  = aa + 4*ai[i];
816e48d15efSToby Isaac           vi = aj + ai[i];
817e48d15efSToby Isaac           nz = ai[i+1] - ai[i];
818e48d15efSToby Isaac           s[0] = b[i2]; s[1] = b[i2+1];
819e48d15efSToby Isaac           for (j=0; j<nz; j++) {
820e48d15efSToby Isaac             idx = 2*vi[j];
821e48d15efSToby Isaac             it  = 4*j;
822e48d15efSToby Isaac             xw[0] = x[idx]; xw[1] = x[1+idx];
823e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_2(s,(v+it),xw);
824e48d15efSToby Isaac           }
825e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_2(xw,idiag,s);
826e48d15efSToby Isaac           x[i2]  += xw[0]; x[i2+1] += xw[1];
827e48d15efSToby Isaac           idiag  -= 4;
828e48d15efSToby Isaac           i2     -= 2;
829e48d15efSToby Isaac         }
830e48d15efSToby Isaac         break;
831e48d15efSToby Isaac       case 3:
832e48d15efSToby Isaac         for (i=m-1; i>=0; i--) {
833e48d15efSToby Isaac           v  = aa + 9*ai[i];
834e48d15efSToby Isaac           vi = aj + ai[i];
835e48d15efSToby Isaac           nz = ai[i+1] - ai[i];
836e48d15efSToby Isaac           s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2];
837e48d15efSToby Isaac           while (nz--) {
838e48d15efSToby Isaac             idx = 3*(*vi++);
839e48d15efSToby Isaac             xw[0] = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx];
840e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_3(s,v,xw);
841e48d15efSToby Isaac             v  += 9;
842e48d15efSToby Isaac           }
843e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_3(xw,idiag,s);
844e48d15efSToby Isaac           x[i2] += xw[0]; x[i2+1] += xw[1]; x[i2+2] += xw[2];
845e48d15efSToby Isaac           idiag  -= 9;
846e48d15efSToby Isaac           i2     -= 3;
847e48d15efSToby Isaac         }
848e48d15efSToby Isaac         break;
849e48d15efSToby Isaac       case 4:
850e48d15efSToby Isaac         for (i=m-1; i>=0; i--) {
851e48d15efSToby Isaac           v  = aa + 16*ai[i];
852e48d15efSToby Isaac           vi = aj + ai[i];
853e48d15efSToby Isaac           nz = ai[i+1] - ai[i];
854e48d15efSToby Isaac           s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2]; s[3] = b[i2+3];
855e48d15efSToby Isaac           while (nz--) {
856e48d15efSToby Isaac             idx = 4*(*vi++);
857e48d15efSToby Isaac             xw[0]  = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; xw[3] = x[3+idx];
858e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_4(s,v,xw);
859e48d15efSToby Isaac             v  += 16;
860e48d15efSToby Isaac           }
861e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_4(xw,idiag,s);
862e48d15efSToby Isaac           x[i2] += xw[0]; x[i2+1] += xw[1]; x[i2+2] += xw[2]; x[i2+3] += xw[3];
863e48d15efSToby Isaac           idiag  -= 16;
864e48d15efSToby Isaac           i2     -= 4;
865e48d15efSToby Isaac         }
866e48d15efSToby Isaac         break;
867e48d15efSToby Isaac       case 5:
868e48d15efSToby Isaac         for (i=m-1; i>=0; i--) {
869e48d15efSToby Isaac           v  = aa + 25*ai[i];
870e48d15efSToby Isaac           vi = aj + ai[i];
871e48d15efSToby Isaac           nz = ai[i+1] - ai[i];
872e48d15efSToby Isaac           s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2]; s[3] = b[i2+3]; s[4] = b[i2+4];
873e48d15efSToby Isaac           while (nz--) {
874e48d15efSToby Isaac             idx = 5*(*vi++);
875e48d15efSToby Isaac             xw[0]  = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; xw[3] = x[3+idx]; xw[4] = x[4+idx];
876e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_5(s,v,xw);
877e48d15efSToby Isaac             v  += 25;
878e48d15efSToby Isaac           }
879e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_5(xw,idiag,s);
880e48d15efSToby Isaac           x[i2] += xw[0]; x[i2+1] += xw[1]; x[i2+2] += xw[2]; x[i2+3] += xw[3]; x[i2+4] += xw[4];
881e48d15efSToby Isaac           idiag  -= 25;
882e48d15efSToby Isaac           i2     -= 5;
883e48d15efSToby Isaac         }
884e48d15efSToby Isaac         break;
885e48d15efSToby Isaac       case 6:
886e48d15efSToby Isaac         for (i=m-1; i>=0; i--) {
887e48d15efSToby Isaac           v  = aa + 36*ai[i];
888e48d15efSToby Isaac           vi = aj + ai[i];
889e48d15efSToby Isaac           nz = ai[i+1] - ai[i];
890e48d15efSToby Isaac           s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2]; s[3] = b[i2+3]; s[4] = b[i2+4]; s[5] = b[i2+5];
891e48d15efSToby Isaac           while (nz--) {
892e48d15efSToby Isaac             idx = 6*(*vi++);
893e48d15efSToby Isaac             xw[0] = x[idx];   xw[1] = x[1+idx]; xw[2] = x[2+idx];
894e48d15efSToby Isaac             xw[3] = x[3+idx]; xw[4] = x[4+idx]; xw[5] = x[5+idx];
895e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_6(s,v,xw);
896e48d15efSToby Isaac             v  += 36;
897e48d15efSToby Isaac           }
898e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_6(xw,idiag,s);
899e48d15efSToby Isaac           x[i2] += xw[0]; x[i2+1] += xw[1]; x[i2+2] += xw[2];
900e48d15efSToby Isaac           x[i2+3] += xw[3]; x[i2+4] += xw[4]; x[i2+5] += xw[5];
901e48d15efSToby Isaac           idiag  -= 36;
902e48d15efSToby Isaac           i2     -= 6;
903e48d15efSToby Isaac         }
904e48d15efSToby Isaac         break;
905e48d15efSToby Isaac       case 7:
906e48d15efSToby Isaac         for (i=m-1; i>=0; i--) {
907e48d15efSToby Isaac           v  = aa + 49*ai[i];
908e48d15efSToby Isaac           vi = aj + ai[i];
909e48d15efSToby Isaac           nz = ai[i+1] - ai[i];
910e48d15efSToby Isaac           s[0] = b[i2];   s[1] = b[i2+1]; s[2] = b[i2+2];
911e48d15efSToby Isaac           s[3] = b[i2+3]; s[4] = b[i2+4]; s[5] = b[i2+5]; s[6] = b[i2+6];
912e48d15efSToby Isaac           while (nz--) {
913e48d15efSToby Isaac             idx = 7*(*vi++);
914e48d15efSToby Isaac             xw[0] = x[idx];   xw[1] = x[1+idx]; xw[2] = x[2+idx];
915e48d15efSToby Isaac             xw[3] = x[3+idx]; xw[4] = x[4+idx]; xw[5] = x[5+idx]; xw[6] = x[6+idx];
916e48d15efSToby Isaac             PetscKernel_v_gets_v_minus_A_times_w_7(s,v,xw);
917e48d15efSToby Isaac             v  += 49;
918e48d15efSToby Isaac           }
919e48d15efSToby Isaac           PetscKernel_v_gets_A_times_w_7(xw,idiag,s);
920e48d15efSToby Isaac           x[i2] +=   xw[0]; x[i2+1] += xw[1]; x[i2+2] += xw[2];
921e48d15efSToby Isaac           x[i2+3] += xw[3]; x[i2+4] += xw[4]; x[i2+5] += xw[5]; x[i2+6] += xw[6];
922e48d15efSToby Isaac           idiag  -= 49;
923e48d15efSToby Isaac           i2     -= 7;
924e48d15efSToby Isaac         }
925e48d15efSToby Isaac         break;
926e48d15efSToby Isaac       default:
927e48d15efSToby Isaac         for (i=m-1; i>=0; i--) {
928e48d15efSToby Isaac           v  = aa + bs2*ai[i];
929e48d15efSToby Isaac           vi = aj + ai[i];
930e48d15efSToby Isaac           nz = ai[i+1] - ai[i];
931e48d15efSToby Isaac 
9329566063dSJacob Faibussowitsch           PetscCall(PetscArraycpy(w,b+i2,bs));
933e48d15efSToby Isaac           /* copy all rows of x that are needed into contiguous space */
934e48d15efSToby Isaac           workt = work;
935e48d15efSToby Isaac           for (j=0; j<nz; j++) {
9369566063dSJacob Faibussowitsch             PetscCall(PetscArraycpy(workt,x + bs*(*vi++),bs));
937e48d15efSToby Isaac             workt += bs;
938e48d15efSToby Isaac           }
939e48d15efSToby Isaac           PetscKernel_w_gets_w_minus_Ar_times_v(bs,bs*nz,w,v,work);
940e48d15efSToby Isaac           PetscKernel_w_gets_w_plus_Ar_times_v(bs,bs,w,idiag,x+i2);
941e48d15efSToby Isaac 
942e48d15efSToby Isaac           idiag -= bs2;
943e48d15efSToby Isaac           i2    -= bs;
944e48d15efSToby Isaac         }
945e48d15efSToby Isaac         break;
946e48d15efSToby Isaac       }
9479566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0*bs2*(a->nz)));
948e48d15efSToby Isaac     }
949e48d15efSToby Isaac   }
9509566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(xx,&x));
9519566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(bb,&b));
952de80f912SBarry Smith   PetscFunctionReturn(0);
953de80f912SBarry Smith }
954de80f912SBarry Smith 
955af674e45SBarry Smith /*
95681824310SBarry Smith     Special version for direct calls from Fortran (Used in PETSc-fun3d)
957af674e45SBarry Smith */
958af674e45SBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS)
959af674e45SBarry Smith #define matsetvaluesblocked4_ MATSETVALUESBLOCKED4
960af674e45SBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
961af674e45SBarry Smith #define matsetvaluesblocked4_ matsetvaluesblocked4
962af674e45SBarry Smith #endif
963af674e45SBarry Smith 
9648cc058d9SJed Brown PETSC_EXTERN void matsetvaluesblocked4_(Mat *AA,PetscInt *mm,const PetscInt im[],PetscInt *nn,const PetscInt in[],const PetscScalar v[])
965af674e45SBarry Smith {
966af674e45SBarry Smith   Mat               A  = *AA;
967af674e45SBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
968c1ac3661SBarry Smith   PetscInt          *rp,k,low,high,t,ii,jj,row,nrow,i,col,l,N,m = *mm,n = *nn;
969c1ac3661SBarry Smith   PetscInt          *ai    =a->i,*ailen=a->ilen;
97017ec6a02SBarry Smith   PetscInt          *aj    =a->j,stepval,lastcol = -1;
971f15d580aSBarry Smith   const PetscScalar *value = v;
9724bb09213Spetsc   MatScalar         *ap,*aa = a->a,*bap;
973af674e45SBarry Smith 
974af674e45SBarry Smith   PetscFunctionBegin;
975ce94432eSBarry Smith   if (A->rmap->bs != 4) SETERRABORT(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Can only be called with a block size of 4");
976af674e45SBarry Smith   stepval = (n-1)*4;
977af674e45SBarry Smith   for (k=0; k<m; k++) { /* loop over added rows */
978af674e45SBarry Smith     row  = im[k];
979af674e45SBarry Smith     rp   = aj + ai[row];
980af674e45SBarry Smith     ap   = aa + 16*ai[row];
981af674e45SBarry Smith     nrow = ailen[row];
982af674e45SBarry Smith     low  = 0;
98317ec6a02SBarry Smith     high = nrow;
984af674e45SBarry Smith     for (l=0; l<n; l++) { /* loop over added columns */
985af674e45SBarry Smith       col = in[l];
986db4deed7SKarl Rupp       if (col <= lastcol)  low = 0;
987db4deed7SKarl Rupp       else                high = nrow;
98817ec6a02SBarry Smith       lastcol = col;
9891e3347e8SBarry Smith       value   = v + k*(stepval+4 + l)*4;
990af674e45SBarry Smith       while (high-low > 7) {
991af674e45SBarry Smith         t = (low+high)/2;
992af674e45SBarry Smith         if (rp[t] > col) high = t;
993af674e45SBarry Smith         else             low  = t;
994af674e45SBarry Smith       }
995af674e45SBarry Smith       for (i=low; i<high; i++) {
996af674e45SBarry Smith         if (rp[i] > col) break;
997af674e45SBarry Smith         if (rp[i] == col) {
998af674e45SBarry Smith           bap = ap +  16*i;
999af674e45SBarry Smith           for (ii=0; ii<4; ii++,value+=stepval) {
1000af674e45SBarry Smith             for (jj=ii; jj<16; jj+=4) {
1001af674e45SBarry Smith               bap[jj] += *value++;
1002af674e45SBarry Smith             }
1003af674e45SBarry Smith           }
1004af674e45SBarry Smith           goto noinsert2;
1005af674e45SBarry Smith         }
1006af674e45SBarry Smith       }
1007af674e45SBarry Smith       N = nrow++ - 1;
100817ec6a02SBarry Smith       high++; /* added new column index thus must search to one higher than before */
1009af674e45SBarry Smith       /* shift up all the later entries in this row */
1010af674e45SBarry Smith       for (ii=N; ii>=i; ii--) {
1011af674e45SBarry Smith         rp[ii+1] = rp[ii];
10129566063dSJacob Faibussowitsch         PetscCallVoid(PetscArraycpy(ap+16*(ii+1),ap+16*(ii),16));
1013af674e45SBarry Smith       }
1014af674e45SBarry Smith       if (N >= i) {
10159566063dSJacob Faibussowitsch         PetscCallVoid(PetscArrayzero(ap+16*i,16));
1016af674e45SBarry Smith       }
1017af674e45SBarry Smith       rp[i] = col;
1018af674e45SBarry Smith       bap   = ap +  16*i;
1019af674e45SBarry Smith       for (ii=0; ii<4; ii++,value+=stepval) {
1020af674e45SBarry Smith         for (jj=ii; jj<16; jj+=4) {
1021af674e45SBarry Smith           bap[jj] = *value++;
1022af674e45SBarry Smith         }
1023af674e45SBarry Smith       }
1024af674e45SBarry Smith       noinsert2:;
1025af674e45SBarry Smith       low = i;
1026af674e45SBarry Smith     }
1027af674e45SBarry Smith     ailen[row] = nrow;
1028af674e45SBarry Smith   }
1029be1d678aSKris Buschelman   PetscFunctionReturnVoid();
1030af674e45SBarry Smith }
1031af674e45SBarry Smith 
1032af674e45SBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS)
1033af674e45SBarry Smith #define matsetvalues4_ MATSETVALUES4
1034af674e45SBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
1035af674e45SBarry Smith #define matsetvalues4_ matsetvalues4
1036af674e45SBarry Smith #endif
1037af674e45SBarry Smith 
10388cc058d9SJed Brown PETSC_EXTERN void matsetvalues4_(Mat *AA,PetscInt *mm,PetscInt *im,PetscInt *nn,PetscInt *in,PetscScalar *v)
1039af674e45SBarry Smith {
1040af674e45SBarry Smith   Mat         A  = *AA;
1041af674e45SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data;
1042580bdb30SBarry Smith   PetscInt    *rp,k,low,high,t,row,nrow,i,col,l,N,n = *nn,m = *mm;
1043c1ac3661SBarry Smith   PetscInt    *ai=a->i,*ailen=a->ilen;
1044c1ac3661SBarry Smith   PetscInt    *aj=a->j,brow,bcol;
104517ec6a02SBarry Smith   PetscInt    ridx,cidx,lastcol = -1;
1046af674e45SBarry Smith   MatScalar   *ap,value,*aa=a->a,*bap;
1047af674e45SBarry Smith 
1048af674e45SBarry Smith   PetscFunctionBegin;
1049af674e45SBarry Smith   for (k=0; k<m; k++) { /* loop over added rows */
1050af674e45SBarry Smith     row  = im[k]; brow = row/4;
1051af674e45SBarry Smith     rp   = aj + ai[brow];
1052af674e45SBarry Smith     ap   = aa + 16*ai[brow];
1053af674e45SBarry Smith     nrow = ailen[brow];
1054af674e45SBarry Smith     low  = 0;
105517ec6a02SBarry Smith     high = nrow;
1056af674e45SBarry Smith     for (l=0; l<n; l++) { /* loop over added columns */
1057af674e45SBarry Smith       col   = in[l]; bcol = col/4;
1058af674e45SBarry Smith       ridx  = row % 4; cidx = col % 4;
1059af674e45SBarry Smith       value = v[l + k*n];
1060db4deed7SKarl Rupp       if (col <= lastcol)  low = 0;
1061db4deed7SKarl Rupp       else                high = nrow;
106217ec6a02SBarry Smith       lastcol = col;
1063af674e45SBarry Smith       while (high-low > 7) {
1064af674e45SBarry Smith         t = (low+high)/2;
1065af674e45SBarry Smith         if (rp[t] > bcol) high = t;
1066af674e45SBarry Smith         else              low  = t;
1067af674e45SBarry Smith       }
1068af674e45SBarry Smith       for (i=low; i<high; i++) {
1069af674e45SBarry Smith         if (rp[i] > bcol) break;
1070af674e45SBarry Smith         if (rp[i] == bcol) {
1071af674e45SBarry Smith           bap   = ap +  16*i + 4*cidx + ridx;
1072af674e45SBarry Smith           *bap += value;
1073af674e45SBarry Smith           goto noinsert1;
1074af674e45SBarry Smith         }
1075af674e45SBarry Smith       }
1076af674e45SBarry Smith       N = nrow++ - 1;
107717ec6a02SBarry Smith       high++; /* added new column thus must search to one higher than before */
1078af674e45SBarry Smith       /* shift up all the later entries in this row */
10799566063dSJacob Faibussowitsch       PetscCallVoid(PetscArraymove(rp+i+1,rp+i,N-i+1));
10809566063dSJacob Faibussowitsch       PetscCallVoid(PetscArraymove(ap+16*i+16,ap+16*i,16*(N-i+1)));
10819566063dSJacob Faibussowitsch       PetscCallVoid(PetscArrayzero(ap+16*i,16));
1082af674e45SBarry Smith       rp[i]                    = bcol;
1083af674e45SBarry Smith       ap[16*i + 4*cidx + ridx] = value;
1084af674e45SBarry Smith noinsert1:;
1085af674e45SBarry Smith       low = i;
1086af674e45SBarry Smith     }
1087af674e45SBarry Smith     ailen[brow] = nrow;
1088af674e45SBarry Smith   }
1089be1d678aSKris Buschelman   PetscFunctionReturnVoid();
1090af674e45SBarry Smith }
1091af674e45SBarry Smith 
1092be5855fcSBarry Smith /*
1093be5855fcSBarry Smith      Checks for missing diagonals
1094be5855fcSBarry Smith */
1095ace3abfcSBarry Smith PetscErrorCode MatMissingDiagonal_SeqBAIJ(Mat A,PetscBool  *missing,PetscInt *d)
1096be5855fcSBarry Smith {
1097be5855fcSBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
10987734d3b5SMatthew G. Knepley   PetscInt       *diag,*ii = a->i,i;
1099be5855fcSBarry Smith 
1100be5855fcSBarry Smith   PetscFunctionBegin;
11019566063dSJacob Faibussowitsch   PetscCall(MatMarkDiagonal_SeqBAIJ(A));
11022af78befSBarry Smith   *missing = PETSC_FALSE;
11037734d3b5SMatthew G. Knepley   if (A->rmap->n > 0 && !ii) {
11042efa7f71SHong Zhang     *missing = PETSC_TRUE;
11052efa7f71SHong Zhang     if (d) *d = 0;
11069566063dSJacob Faibussowitsch     PetscCall(PetscInfo(A,"Matrix has no entries therefore is missing diagonal\n"));
11072efa7f71SHong Zhang   } else {
110801445905SHong Zhang     PetscInt n;
110901445905SHong Zhang     n = PetscMin(a->mbs, a->nbs);
1110883fce79SBarry Smith     diag = a->diag;
111101445905SHong Zhang     for (i=0; i<n; i++) {
11127734d3b5SMatthew G. Knepley       if (diag[i] >= ii[i+1]) {
11132af78befSBarry Smith         *missing = PETSC_TRUE;
11142af78befSBarry Smith         if (d) *d = i;
11159566063dSJacob Faibussowitsch         PetscCall(PetscInfo(A,"Matrix is missing block diagonal number %" PetscInt_FMT "\n",i));
1116358d2f5dSShri Abhyankar         break;
11172efa7f71SHong Zhang       }
1118be5855fcSBarry Smith     }
1119be5855fcSBarry Smith   }
1120be5855fcSBarry Smith   PetscFunctionReturn(0);
1121be5855fcSBarry Smith }
1122be5855fcSBarry Smith 
1123dfbe8321SBarry Smith PetscErrorCode MatMarkDiagonal_SeqBAIJ(Mat A)
1124de6a44a3SBarry Smith {
1125de6a44a3SBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
112609f38230SBarry Smith   PetscInt       i,j,m = a->mbs;
1127de6a44a3SBarry Smith 
11283a40ed3dSBarry Smith   PetscFunctionBegin;
112909f38230SBarry Smith   if (!a->diag) {
11309566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(m,&a->diag));
11319566063dSJacob Faibussowitsch     PetscCall(PetscLogObjectMemory((PetscObject)A,m*sizeof(PetscInt)));
11324fd072dbSBarry Smith     a->free_diag = PETSC_TRUE;
113309f38230SBarry Smith   }
11347fc0212eSBarry Smith   for (i=0; i<m; i++) {
113509f38230SBarry Smith     a->diag[i] = a->i[i+1];
1136de6a44a3SBarry Smith     for (j=a->i[i]; j<a->i[i+1]; j++) {
1137de6a44a3SBarry Smith       if (a->j[j] == i) {
113809f38230SBarry Smith         a->diag[i] = j;
1139de6a44a3SBarry Smith         break;
1140de6a44a3SBarry Smith       }
1141de6a44a3SBarry Smith     }
1142de6a44a3SBarry Smith   }
11433a40ed3dSBarry Smith   PetscFunctionReturn(0);
1144de6a44a3SBarry Smith }
11452593348eSBarry Smith 
11461a83f524SJed Brown static PetscErrorCode MatGetRowIJ_SeqBAIJ(Mat A,PetscInt oshift,PetscBool symmetric,PetscBool blockcompressed,PetscInt *nn,const PetscInt *inia[],const PetscInt *inja[],PetscBool  *done)
11473b2fbd54SBarry Smith {
11483b2fbd54SBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
11491a83f524SJed Brown   PetscInt       i,j,n = a->mbs,nz = a->i[n],*tia,*tja,bs = A->rmap->bs,k,l,cnt;
11501a83f524SJed Brown   PetscInt       **ia = (PetscInt**)inia,**ja = (PetscInt**)inja;
11513b2fbd54SBarry Smith 
11523a40ed3dSBarry Smith   PetscFunctionBegin;
11533b2fbd54SBarry Smith   *nn = n;
11543a40ed3dSBarry Smith   if (!ia) PetscFunctionReturn(0);
11553b2fbd54SBarry Smith   if (symmetric) {
11569566063dSJacob Faibussowitsch     PetscCall(MatToSymmetricIJ_SeqAIJ(n,a->i,a->j,PETSC_TRUE,0,0,&tia,&tja));
1157553b3c51SBarry Smith     nz   = tia[n];
11583b2fbd54SBarry Smith   } else {
11598f7157efSSatish Balay     tia = a->i; tja = a->j;
11603b2fbd54SBarry Smith   }
11613b2fbd54SBarry Smith 
1162ecc77c7aSBarry Smith   if (!blockcompressed && bs > 1) {
1163ecc77c7aSBarry Smith     (*nn) *= bs;
11648f7157efSSatish Balay     /* malloc & create the natural set of indices */
11659566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1((n+1)*bs,ia));
11669985e31cSBarry Smith     if (n) {
11672462f5fdSStefano Zampini       (*ia)[0] = oshift;
1168ecc77c7aSBarry Smith       for (j=1; j<bs; j++) {
1169ecc77c7aSBarry Smith         (*ia)[j] = (tia[1]-tia[0])*bs+(*ia)[j-1];
1170ecc77c7aSBarry Smith       }
11719985e31cSBarry Smith     }
1172ecc77c7aSBarry Smith 
1173ecc77c7aSBarry Smith     for (i=1; i<n; i++) {
1174ecc77c7aSBarry Smith       (*ia)[i*bs] = (tia[i]-tia[i-1])*bs + (*ia)[i*bs-1];
1175ecc77c7aSBarry Smith       for (j=1; j<bs; j++) {
1176ecc77c7aSBarry Smith         (*ia)[i*bs+j] = (tia[i+1]-tia[i])*bs + (*ia)[i*bs+j-1];
11778f7157efSSatish Balay       }
11788f7157efSSatish Balay     }
11799985e31cSBarry Smith     if (n) {
1180ecc77c7aSBarry Smith       (*ia)[n*bs] = (tia[n]-tia[n-1])*bs + (*ia)[n*bs-1];
11819985e31cSBarry Smith     }
1182ecc77c7aSBarry Smith 
11831a83f524SJed Brown     if (inja) {
11849566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(nz*bs*bs,ja));
11859985e31cSBarry Smith       cnt = 0;
11869985e31cSBarry Smith       for (i=0; i<n; i++) {
11879985e31cSBarry Smith         for (j=0; j<bs; j++) {
11889985e31cSBarry Smith           for (k=tia[i]; k<tia[i+1]; k++) {
11899985e31cSBarry Smith             for (l=0; l<bs; l++) {
11909985e31cSBarry Smith               (*ja)[cnt++] = bs*tja[k] + l;
11919985e31cSBarry Smith             }
11929985e31cSBarry Smith           }
11939985e31cSBarry Smith         }
11949985e31cSBarry Smith       }
11959985e31cSBarry Smith     }
11969985e31cSBarry Smith 
11978f7157efSSatish Balay     if (symmetric) { /* deallocate memory allocated in MatToSymmetricIJ_SeqAIJ() */
11989566063dSJacob Faibussowitsch       PetscCall(PetscFree(tia));
11999566063dSJacob Faibussowitsch       PetscCall(PetscFree(tja));
12008f7157efSSatish Balay     }
1201f6d58c54SBarry Smith   } else if (oshift == 1) {
1202715a17b5SBarry Smith     if (symmetric) {
1203a2ea699eSBarry Smith       nz = tia[A->rmap->n/bs];
1204715a17b5SBarry Smith       /*  add 1 to i and j indices */
1205715a17b5SBarry Smith       for (i=0; i<A->rmap->n/bs+1; i++) tia[i] = tia[i] + 1;
1206715a17b5SBarry Smith       *ia = tia;
1207715a17b5SBarry Smith       if (ja) {
1208715a17b5SBarry Smith         for (i=0; i<nz; i++) tja[i] = tja[i] + 1;
1209715a17b5SBarry Smith         *ja = tja;
1210715a17b5SBarry Smith       }
1211715a17b5SBarry Smith     } else {
1212a2ea699eSBarry Smith       nz = a->i[A->rmap->n/bs];
1213f6d58c54SBarry Smith       /* malloc space and  add 1 to i and j indices */
12149566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(A->rmap->n/bs+1,ia));
1215f6d58c54SBarry Smith       for (i=0; i<A->rmap->n/bs+1; i++) (*ia)[i] = a->i[i] + 1;
1216f6d58c54SBarry Smith       if (ja) {
12179566063dSJacob Faibussowitsch         PetscCall(PetscMalloc1(nz,ja));
1218f6d58c54SBarry Smith         for (i=0; i<nz; i++) (*ja)[i] = a->j[i] + 1;
1219f6d58c54SBarry Smith       }
1220715a17b5SBarry Smith     }
12218f7157efSSatish Balay   } else {
12228f7157efSSatish Balay     *ia = tia;
1223ecc77c7aSBarry Smith     if (ja) *ja = tja;
12248f7157efSSatish Balay   }
12253a40ed3dSBarry Smith   PetscFunctionReturn(0);
12263b2fbd54SBarry Smith }
12273b2fbd54SBarry Smith 
12281a83f524SJed Brown static PetscErrorCode MatRestoreRowIJ_SeqBAIJ(Mat A,PetscInt oshift,PetscBool symmetric,PetscBool blockcompressed,PetscInt *nn,const PetscInt *ia[],const PetscInt *ja[],PetscBool  *done)
12293b2fbd54SBarry Smith {
12303a40ed3dSBarry Smith   PetscFunctionBegin;
12313a40ed3dSBarry Smith   if (!ia) PetscFunctionReturn(0);
1232715a17b5SBarry Smith   if ((!blockcompressed && A->rmap->bs > 1) || (symmetric || oshift == 1)) {
12339566063dSJacob Faibussowitsch     PetscCall(PetscFree(*ia));
12349566063dSJacob Faibussowitsch     if (ja) PetscCall(PetscFree(*ja));
12353b2fbd54SBarry Smith   }
12363a40ed3dSBarry Smith   PetscFunctionReturn(0);
12373b2fbd54SBarry Smith }
12383b2fbd54SBarry Smith 
1239dfbe8321SBarry Smith PetscErrorCode MatDestroy_SeqBAIJ(Mat A)
12402d61bbb3SSatish Balay {
12412d61bbb3SSatish Balay   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
12422d61bbb3SSatish Balay 
1243433994e6SBarry Smith   PetscFunctionBegin;
1244aa482453SBarry Smith #if defined(PETSC_USE_LOG)
1245c0aa6a63SJacob Faibussowitsch   PetscLogObjectState((PetscObject)A,"Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT ", NZ=%" PetscInt_FMT,A->rmap->N,A->cmap->n,a->nz);
12462d61bbb3SSatish Balay #endif
12479566063dSJacob Faibussowitsch   PetscCall(MatSeqXAIJFreeAIJ(A,&a->a,&a->j,&a->i));
12489566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&a->row));
12499566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&a->col));
12509566063dSJacob Faibussowitsch   if (a->free_diag) PetscCall(PetscFree(a->diag));
12519566063dSJacob Faibussowitsch   PetscCall(PetscFree(a->idiag));
12529566063dSJacob Faibussowitsch   if (a->free_imax_ilen) PetscCall(PetscFree2(a->imax,a->ilen));
12539566063dSJacob Faibussowitsch   PetscCall(PetscFree(a->solve_work));
12549566063dSJacob Faibussowitsch   PetscCall(PetscFree(a->mult_work));
12559566063dSJacob Faibussowitsch   PetscCall(PetscFree(a->sor_workt));
12569566063dSJacob Faibussowitsch   PetscCall(PetscFree(a->sor_work));
12579566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&a->icol));
12589566063dSJacob Faibussowitsch   PetscCall(PetscFree(a->saved_values));
12599566063dSJacob Faibussowitsch   PetscCall(PetscFree2(a->compressedrow.i,a->compressedrow.rindex));
1260c4319e64SHong Zhang 
12619566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&a->sbaijMat));
12629566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&a->parent));
12639566063dSJacob Faibussowitsch   PetscCall(PetscFree(A->data));
1264901853e0SKris Buschelman 
12659566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)A,NULL));
12669566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)A,"MatSeqBAIJGetArray_C",NULL));
12679566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)A,"MatSeqBAIJRestoreArray_C",NULL));
12689566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)A,"MatStoreValues_C",NULL));
12699566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)A,"MatRetrieveValues_C",NULL));
12709566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)A,"MatSeqBAIJSetColumnIndices_C",NULL));
12719566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqbaij_seqaij_C",NULL));
12729566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqbaij_seqsbaij_C",NULL));
12739566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)A,"MatSeqBAIJSetPreallocation_C",NULL));
12749566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)A,"MatSeqBAIJSetPreallocationCSR_C",NULL));
12759566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqbaij_seqbstrm_C",NULL));
12769566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)A,"MatIsTranspose_C",NULL));
12777ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE)
12789566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqbaij_hypre_C",NULL));
12797ea3e4caSstefano_zampini #endif
12809566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqbaij_is_C",NULL));
12812d61bbb3SSatish Balay   PetscFunctionReturn(0);
12822d61bbb3SSatish Balay }
12832d61bbb3SSatish Balay 
1284ace3abfcSBarry Smith PetscErrorCode MatSetOption_SeqBAIJ(Mat A,MatOption op,PetscBool flg)
12852d61bbb3SSatish Balay {
12862d61bbb3SSatish Balay   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
12872d61bbb3SSatish Balay 
12882d61bbb3SSatish Balay   PetscFunctionBegin;
1289aa275fccSKris Buschelman   switch (op) {
1290aa275fccSKris Buschelman   case MAT_ROW_ORIENTED:
12914e0d8c25SBarry Smith     a->roworiented = flg;
1292aa275fccSKris Buschelman     break;
1293a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1294a9817697SBarry Smith     a->keepnonzeropattern = flg;
1295aa275fccSKris Buschelman     break;
1296512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1297512a5fc5SBarry Smith     a->nonew = (flg ? 0 : 1);
1298aa275fccSKris Buschelman     break;
1299aa275fccSKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
13004e0d8c25SBarry Smith     a->nonew = (flg ? -1 : 0);
1301aa275fccSKris Buschelman     break;
1302aa275fccSKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
13034e0d8c25SBarry Smith     a->nonew = (flg ? -2 : 0);
1304aa275fccSKris Buschelman     break;
130528b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
130628b2fa4aSMatthew Knepley     a->nounused = (flg ? -1 : 0);
130728b2fa4aSMatthew Knepley     break;
13088c78258cSHong Zhang   case MAT_FORCE_DIAGONAL_ENTRIES:
1309aa275fccSKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
1310aa275fccSKris Buschelman   case MAT_USE_HASH_TABLE:
1311071fcb05SBarry Smith   case MAT_SORTED_FULL:
13129566063dSJacob Faibussowitsch     PetscCall(PetscInfo(A,"Option %s ignored\n",MatOptions[op]));
1313aa275fccSKris Buschelman     break;
13145021d80fSJed Brown   case MAT_SPD:
131577e54ba9SKris Buschelman   case MAT_SYMMETRIC:
131677e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
13179a4540c5SBarry Smith   case MAT_HERMITIAN:
13189a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1319c10200c1SHong Zhang   case MAT_SUBMAT_SINGLEIS:
1320672ba085SHong Zhang   case MAT_STRUCTURE_ONLY:
13215021d80fSJed Brown     /* These options are handled directly by MatSetOption() */
132277e54ba9SKris Buschelman     break;
1323aa275fccSKris Buschelman   default:
132498921bdaSJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op);
13252d61bbb3SSatish Balay   }
13262d61bbb3SSatish Balay   PetscFunctionReturn(0);
13272d61bbb3SSatish Balay }
13282d61bbb3SSatish Balay 
132952768537SHong Zhang /* used for both SeqBAIJ and SeqSBAIJ matrices */
133052768537SHong Zhang PetscErrorCode MatGetRow_SeqBAIJ_private(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v,PetscInt *ai,PetscInt *aj,PetscScalar *aa)
13312d61bbb3SSatish Balay {
133252768537SHong Zhang   PetscInt       itmp,i,j,k,M,bn,bp,*idx_i,bs,bs2;
133352768537SHong Zhang   MatScalar      *aa_i;
133487828ca2SBarry Smith   PetscScalar    *v_i;
13352d61bbb3SSatish Balay 
13362d61bbb3SSatish Balay   PetscFunctionBegin;
1337d0f46423SBarry Smith   bs  = A->rmap->bs;
133852768537SHong Zhang   bs2 = bs*bs;
13395f80ce2aSJacob Faibussowitsch   PetscCheck(row >= 0 && row < A->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %" PetscInt_FMT " out of range", row);
13402d61bbb3SSatish Balay 
13412d61bbb3SSatish Balay   bn  = row/bs;   /* Block number */
13422d61bbb3SSatish Balay   bp  = row % bs; /* Block Position */
13432d61bbb3SSatish Balay   M   = ai[bn+1] - ai[bn];
13442d61bbb3SSatish Balay   *nz = bs*M;
13452d61bbb3SSatish Balay 
13462d61bbb3SSatish Balay   if (v) {
1347f4259b30SLisandro Dalcin     *v = NULL;
13482d61bbb3SSatish Balay     if (*nz) {
13499566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(*nz,v));
13502d61bbb3SSatish Balay       for (i=0; i<M; i++) { /* for each block in the block row */
13512d61bbb3SSatish Balay         v_i  = *v + i*bs;
13522d61bbb3SSatish Balay         aa_i = aa + bs2*(ai[bn] + i);
135326fbe8dcSKarl Rupp         for (j=bp,k=0; j<bs2; j+=bs,k++) v_i[k] = aa_i[j];
13542d61bbb3SSatish Balay       }
13552d61bbb3SSatish Balay     }
13562d61bbb3SSatish Balay   }
13572d61bbb3SSatish Balay 
13582d61bbb3SSatish Balay   if (idx) {
1359f4259b30SLisandro Dalcin     *idx = NULL;
13602d61bbb3SSatish Balay     if (*nz) {
13619566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(*nz,idx));
13622d61bbb3SSatish Balay       for (i=0; i<M; i++) { /* for each block in the block row */
13632d61bbb3SSatish Balay         idx_i = *idx + i*bs;
13642d61bbb3SSatish Balay         itmp  = bs*aj[ai[bn] + i];
136526fbe8dcSKarl Rupp         for (j=0; j<bs; j++) idx_i[j] = itmp++;
13662d61bbb3SSatish Balay       }
13672d61bbb3SSatish Balay     }
13682d61bbb3SSatish Balay   }
13692d61bbb3SSatish Balay   PetscFunctionReturn(0);
13702d61bbb3SSatish Balay }
13712d61bbb3SSatish Balay 
137252768537SHong Zhang PetscErrorCode MatGetRow_SeqBAIJ(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
137352768537SHong Zhang {
137452768537SHong Zhang   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
137552768537SHong Zhang 
137652768537SHong Zhang   PetscFunctionBegin;
13779566063dSJacob Faibussowitsch   PetscCall(MatGetRow_SeqBAIJ_private(A,row,nz,idx,v,a->i,a->j,a->a));
137852768537SHong Zhang   PetscFunctionReturn(0);
137952768537SHong Zhang }
138052768537SHong Zhang 
1381c1ac3661SBarry Smith PetscErrorCode MatRestoreRow_SeqBAIJ(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
13822d61bbb3SSatish Balay {
13832d61bbb3SSatish Balay   PetscFunctionBegin;
1384cb4a9cd9SHong Zhang   if (nz)  *nz = 0;
13859566063dSJacob Faibussowitsch   if (idx) PetscCall(PetscFree(*idx));
13869566063dSJacob Faibussowitsch   if (v)   PetscCall(PetscFree(*v));
13872d61bbb3SSatish Balay   PetscFunctionReturn(0);
13882d61bbb3SSatish Balay }
13892d61bbb3SSatish Balay 
1390fc4dec0aSBarry Smith PetscErrorCode MatTranspose_SeqBAIJ(Mat A,MatReuse reuse,Mat *B)
13912d61bbb3SSatish Balay {
139220e84f26SHong Zhang   Mat_SeqBAIJ    *a=(Mat_SeqBAIJ*)A->data,*at;
13932d61bbb3SSatish Balay   Mat            C;
139420e84f26SHong Zhang   PetscInt       i,j,k,*aj=a->j,*ai=a->i,bs=A->rmap->bs,mbs=a->mbs,nbs=a->nbs,*atfill;
139520e84f26SHong Zhang   PetscInt       bs2=a->bs2,*ati,*atj,anzj,kr;
139620e84f26SHong Zhang   MatScalar      *ata,*aa=a->a;
13972d61bbb3SSatish Balay 
13982d61bbb3SSatish Balay   PetscFunctionBegin;
13999566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(1+nbs,&atfill));
1400cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) {
140120e84f26SHong Zhang     for (i=0; i<ai[mbs]; i++) atfill[aj[i]] += 1; /* count num of non-zeros in row aj[i] */
14022d61bbb3SSatish Balay 
14039566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&C));
14049566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(C,A->cmap->n,A->rmap->N,A->cmap->n,A->rmap->N));
14059566063dSJacob Faibussowitsch     PetscCall(MatSetType(C,((PetscObject)A)->type_name));
14069566063dSJacob Faibussowitsch     PetscCall(MatSeqBAIJSetPreallocation(C,bs,0,atfill));
140720e84f26SHong Zhang 
140820e84f26SHong Zhang     at  = (Mat_SeqBAIJ*)C->data;
140920e84f26SHong Zhang     ati = at->i;
141020e84f26SHong Zhang     for (i=0; i<nbs; i++) at->ilen[i] = at->imax[i] = ati[i+1] - ati[i];
1411fc4dec0aSBarry Smith   } else {
1412fc4dec0aSBarry Smith     C = *B;
141320e84f26SHong Zhang     at = (Mat_SeqBAIJ*)C->data;
141420e84f26SHong Zhang     ati = at->i;
1415fc4dec0aSBarry Smith   }
1416fc4dec0aSBarry Smith 
141720e84f26SHong Zhang   atj = at->j;
141820e84f26SHong Zhang   ata = at->a;
141920e84f26SHong Zhang 
142020e84f26SHong Zhang   /* Copy ati into atfill so we have locations of the next free space in atj */
14219566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(atfill,ati,nbs));
142220e84f26SHong Zhang 
142320e84f26SHong Zhang   /* Walk through A row-wise and mark nonzero entries of A^T. */
14242d61bbb3SSatish Balay   for (i=0; i<mbs; i++) {
142520e84f26SHong Zhang     anzj = ai[i+1] - ai[i];
142620e84f26SHong Zhang     for (j=0; j<anzj; j++) {
142720e84f26SHong Zhang       atj[atfill[*aj]] = i;
142820e84f26SHong Zhang       for (kr=0; kr<bs; kr++) {
142920e84f26SHong Zhang         for (k=0; k<bs; k++) {
143020e84f26SHong Zhang           ata[bs2*atfill[*aj]+k*bs+kr] = *aa++;
14312d61bbb3SSatish Balay         }
14322d61bbb3SSatish Balay       }
143320e84f26SHong Zhang       atfill[*aj++] += 1;
143420e84f26SHong Zhang     }
143520e84f26SHong Zhang   }
14369566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY));
14379566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY));
14382d61bbb3SSatish Balay 
143920e84f26SHong Zhang   /* Clean up temporary space and complete requests. */
14409566063dSJacob Faibussowitsch   PetscCall(PetscFree(atfill));
144120e84f26SHong Zhang 
1442cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) {
14439566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(C,PetscAbs(A->cmap->bs),PetscAbs(A->rmap->bs)));
14442d61bbb3SSatish Balay     *B = C;
14452d61bbb3SSatish Balay   } else {
14469566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(A,&C));
14472d61bbb3SSatish Balay   }
14482d61bbb3SSatish Balay   PetscFunctionReturn(0);
14492d61bbb3SSatish Balay }
14502d61bbb3SSatish Balay 
1451453d3561SHong Zhang PetscErrorCode MatIsTranspose_SeqBAIJ(Mat A,Mat B,PetscReal tol,PetscBool  *f)
1452453d3561SHong Zhang {
1453453d3561SHong Zhang   Mat            Btrans;
1454453d3561SHong Zhang 
1455453d3561SHong Zhang   PetscFunctionBegin;
1456453d3561SHong Zhang   *f   = PETSC_FALSE;
14579566063dSJacob Faibussowitsch   PetscCall(MatTranspose_SeqBAIJ(A,MAT_INITIAL_MATRIX,&Btrans));
14589566063dSJacob Faibussowitsch   PetscCall(MatEqual_SeqBAIJ(B,Btrans,f));
14599566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&Btrans));
1460453d3561SHong Zhang   PetscFunctionReturn(0);
1461453d3561SHong Zhang }
1462453d3561SHong Zhang 
1463618cc2edSLisandro Dalcin /* Used for both SeqBAIJ and SeqSBAIJ matrices */
1464b51a4376SLisandro Dalcin PetscErrorCode MatView_SeqBAIJ_Binary(Mat mat,PetscViewer viewer)
14652593348eSBarry Smith {
1466b51a4376SLisandro Dalcin   Mat_SeqBAIJ    *A = (Mat_SeqBAIJ*)mat->data;
1467b51a4376SLisandro Dalcin   PetscInt       header[4],M,N,m,bs,nz,cnt,i,j,k,l;
1468b51a4376SLisandro Dalcin   PetscInt       *rowlens,*colidxs;
1469b51a4376SLisandro Dalcin   PetscScalar    *matvals;
14702593348eSBarry Smith 
14713a40ed3dSBarry Smith   PetscFunctionBegin;
14729566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
14733b2fbd54SBarry Smith 
1474b51a4376SLisandro Dalcin   M  = mat->rmap->N;
1475b51a4376SLisandro Dalcin   N  = mat->cmap->N;
1476b51a4376SLisandro Dalcin   m  = mat->rmap->n;
1477b51a4376SLisandro Dalcin   bs = mat->rmap->bs;
1478b51a4376SLisandro Dalcin   nz = bs*bs*A->nz;
14792593348eSBarry Smith 
1480b51a4376SLisandro Dalcin   /* write matrix header */
1481b51a4376SLisandro Dalcin   header[0] = MAT_FILE_CLASSID;
1482b51a4376SLisandro Dalcin   header[1] = M; header[2] = N; header[3] = nz;
14839566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWrite(viewer,header,4,PETSC_INT));
14842593348eSBarry Smith 
1485b51a4376SLisandro Dalcin   /* store row lengths */
14869566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m,&rowlens));
1487b51a4376SLisandro Dalcin   for (cnt=0, i=0; i<A->mbs; i++)
1488b51a4376SLisandro Dalcin     for (j=0; j<bs; j++)
1489b51a4376SLisandro Dalcin       rowlens[cnt++] = bs*(A->i[i+1] - A->i[i]);
14909566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWrite(viewer,rowlens,m,PETSC_INT));
14919566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowlens));
1492b51a4376SLisandro Dalcin 
1493b51a4376SLisandro Dalcin   /* store column indices  */
14949566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz,&colidxs));
1495b51a4376SLisandro Dalcin   for (cnt=0, i=0; i<A->mbs; i++)
1496b51a4376SLisandro Dalcin     for (k=0; k<bs; k++)
1497b51a4376SLisandro Dalcin       for (j=A->i[i]; j<A->i[i+1]; j++)
1498b51a4376SLisandro Dalcin         for (l=0; l<bs; l++)
1499b51a4376SLisandro Dalcin           colidxs[cnt++] = bs*A->j[j] + l;
15005f80ce2aSJacob Faibussowitsch   PetscCheck(cnt == nz,PETSC_COMM_SELF,PETSC_ERR_LIB,"Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt_FMT,cnt,nz);
15019566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWrite(viewer,colidxs,nz,PETSC_INT));
15029566063dSJacob Faibussowitsch   PetscCall(PetscFree(colidxs));
15032593348eSBarry Smith 
15042593348eSBarry Smith   /* store nonzero values */
15059566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz,&matvals));
1506b51a4376SLisandro Dalcin   for (cnt=0, i=0; i<A->mbs; i++)
1507b51a4376SLisandro Dalcin     for (k=0; k<bs; k++)
1508b51a4376SLisandro Dalcin       for (j=A->i[i]; j<A->i[i+1]; j++)
1509b51a4376SLisandro Dalcin         for (l=0; l<bs; l++)
1510b51a4376SLisandro Dalcin           matvals[cnt++] = A->a[bs*(bs*j + l) + k];
15115f80ce2aSJacob Faibussowitsch   PetscCheck(cnt == nz,PETSC_COMM_SELF,PETSC_ERR_LIB,"Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt_FMT,cnt,nz);
15129566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWrite(viewer,matvals,nz,PETSC_SCALAR));
15139566063dSJacob Faibussowitsch   PetscCall(PetscFree(matvals));
1514ce6f0cecSBarry Smith 
1515b51a4376SLisandro Dalcin   /* write block size option to the viewer's .info file */
15169566063dSJacob Faibussowitsch   PetscCall(MatView_Binary_BlockSizes(mat,viewer));
15173a40ed3dSBarry Smith   PetscFunctionReturn(0);
15182593348eSBarry Smith }
15192593348eSBarry Smith 
15207dc0baabSHong Zhang static PetscErrorCode MatView_SeqBAIJ_ASCII_structonly(Mat A,PetscViewer viewer)
15217dc0baabSHong Zhang {
15227dc0baabSHong Zhang   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
15237dc0baabSHong Zhang   PetscInt       i,bs = A->rmap->bs,k;
15247dc0baabSHong Zhang 
15257dc0baabSHong Zhang   PetscFunctionBegin;
15269566063dSJacob Faibussowitsch   PetscCall(PetscViewerASCIIUseTabs(viewer,PETSC_FALSE));
15277dc0baabSHong Zhang   for (i=0; i<a->mbs; i++) {
15289566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer,"row %" PetscInt_FMT "-%" PetscInt_FMT ":",i*bs,i*bs+bs-1));
15297dc0baabSHong Zhang     for (k=a->i[i]; k<a->i[i+1]; k++) {
15309566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT "-%" PetscInt_FMT ") ",bs*a->j[k],bs*a->j[k]+bs-1));
15317dc0baabSHong Zhang     }
15329566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer,"\n"));
15337dc0baabSHong Zhang   }
15349566063dSJacob Faibussowitsch   PetscCall(PetscViewerASCIIUseTabs(viewer,PETSC_TRUE));
15357dc0baabSHong Zhang   PetscFunctionReturn(0);
15367dc0baabSHong Zhang }
15377dc0baabSHong Zhang 
15386849ba73SBarry Smith static PetscErrorCode MatView_SeqBAIJ_ASCII(Mat A,PetscViewer viewer)
15392593348eSBarry Smith {
1540b6490206SBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
1541d0f46423SBarry Smith   PetscInt          i,j,bs = A->rmap->bs,k,l,bs2=a->bs2;
1542f3ef73ceSBarry Smith   PetscViewerFormat format;
15432593348eSBarry Smith 
15443a40ed3dSBarry Smith   PetscFunctionBegin;
15457dc0baabSHong Zhang   if (A->structure_only) {
15469566063dSJacob Faibussowitsch     PetscCall(MatView_SeqBAIJ_ASCII_structonly(A,viewer));
15477dc0baabSHong Zhang     PetscFunctionReturn(0);
15487dc0baabSHong Zhang   }
15497dc0baabSHong Zhang 
15509566063dSJacob Faibussowitsch   PetscCall(PetscViewerGetFormat(viewer,&format));
1551456192e2SBarry Smith   if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
15529566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPrintf(viewer,"  block size is %" PetscInt_FMT "\n",bs));
1553fb9695e5SSatish Balay   } else if (format == PETSC_VIEWER_ASCII_MATLAB) {
1554ade3a672SBarry Smith     const char *matname;
1555bcd9e38bSBarry Smith     Mat        aij;
15569566063dSJacob Faibussowitsch     PetscCall(MatConvert(A,MATSEQAIJ,MAT_INITIAL_MATRIX,&aij));
15579566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)A,&matname));
15589566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)aij,matname));
15599566063dSJacob Faibussowitsch     PetscCall(MatView(aij,viewer));
15609566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&aij));
156104929863SHong Zhang   } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
156204929863SHong Zhang       PetscFunctionReturn(0);
1563fb9695e5SSatish Balay   } else if (format == PETSC_VIEWER_ASCII_COMMON) {
15649566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIUseTabs(viewer,PETSC_FALSE));
156544cd7ae7SLois Curfman McInnes     for (i=0; i<a->mbs; i++) {
156644cd7ae7SLois Curfman McInnes       for (j=0; j<bs; j++) {
15679566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer,"row %" PetscInt_FMT ":",i*bs+j));
156844cd7ae7SLois Curfman McInnes         for (k=a->i[i]; k<a->i[i+1]; k++) {
156944cd7ae7SLois Curfman McInnes           for (l=0; l<bs; l++) {
1570aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
15710e6d2581SBarry Smith             if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) > 0.0 && PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) {
15729566063dSJacob Faibussowitsch               PetscCall(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g + %gi) ",bs*a->j[k]+l,
15735f80ce2aSJacob Faibussowitsch                                              (double)PetscRealPart(a->a[bs2*k + l*bs + j]),(double)PetscImaginaryPart(a->a[bs2*k + l*bs + j])));
15740e6d2581SBarry Smith             } else if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) < 0.0 && PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) {
15759566063dSJacob Faibussowitsch               PetscCall(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g - %gi) ",bs*a->j[k]+l,
15765f80ce2aSJacob Faibussowitsch                                              (double)PetscRealPart(a->a[bs2*k + l*bs + j]),-(double)PetscImaginaryPart(a->a[bs2*k + l*bs + j])));
15770e6d2581SBarry Smith             } else if (PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) {
15789566063dSJacob Faibussowitsch               PetscCall(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g) ",bs*a->j[k]+l,(double)PetscRealPart(a->a[bs2*k + l*bs + j])));
15790ef38995SBarry Smith             }
158044cd7ae7SLois Curfman McInnes #else
15810ef38995SBarry Smith             if (a->a[bs2*k + l*bs + j] != 0.0) {
15829566063dSJacob Faibussowitsch               PetscCall(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g) ",bs*a->j[k]+l,(double)a->a[bs2*k + l*bs + j]));
15830ef38995SBarry Smith             }
158444cd7ae7SLois Curfman McInnes #endif
158544cd7ae7SLois Curfman McInnes           }
158644cd7ae7SLois Curfman McInnes         }
15879566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer,"\n"));
158844cd7ae7SLois Curfman McInnes       }
158944cd7ae7SLois Curfman McInnes     }
15909566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIUseTabs(viewer,PETSC_TRUE));
15910ef38995SBarry Smith   } else {
15929566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIUseTabs(viewer,PETSC_FALSE));
1593b6490206SBarry Smith     for (i=0; i<a->mbs; i++) {
1594b6490206SBarry Smith       for (j=0; j<bs; j++) {
15959566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer,"row %" PetscInt_FMT ":",i*bs+j));
1596b6490206SBarry Smith         for (k=a->i[i]; k<a->i[i+1]; k++) {
1597b6490206SBarry Smith           for (l=0; l<bs; l++) {
1598aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
15990e6d2581SBarry Smith             if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) > 0.0) {
16009566063dSJacob Faibussowitsch               PetscCall(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g + %g i) ",bs*a->j[k]+l,
16015f80ce2aSJacob Faibussowitsch                                              (double)PetscRealPart(a->a[bs2*k + l*bs + j]),(double)PetscImaginaryPart(a->a[bs2*k + l*bs + j])));
16020e6d2581SBarry Smith             } else if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) < 0.0) {
16039566063dSJacob Faibussowitsch               PetscCall(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g - %g i) ",bs*a->j[k]+l,
16045f80ce2aSJacob Faibussowitsch                                              (double)PetscRealPart(a->a[bs2*k + l*bs + j]),-(double)PetscImaginaryPart(a->a[bs2*k + l*bs + j])));
16050ef38995SBarry Smith             } else {
16069566063dSJacob Faibussowitsch               PetscCall(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g) ",bs*a->j[k]+l,(double)PetscRealPart(a->a[bs2*k + l*bs + j])));
160788685aaeSLois Curfman McInnes             }
160888685aaeSLois Curfman McInnes #else
16099566063dSJacob Faibussowitsch             PetscCall(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g) ",bs*a->j[k]+l,(double)a->a[bs2*k + l*bs + j]));
161088685aaeSLois Curfman McInnes #endif
16112593348eSBarry Smith           }
16122593348eSBarry Smith         }
16139566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer,"\n"));
16142593348eSBarry Smith       }
16152593348eSBarry Smith     }
16169566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIUseTabs(viewer,PETSC_TRUE));
1617b6490206SBarry Smith   }
16189566063dSJacob Faibussowitsch   PetscCall(PetscViewerFlush(viewer));
16193a40ed3dSBarry Smith   PetscFunctionReturn(0);
16202593348eSBarry Smith }
16212593348eSBarry Smith 
16229804daf3SBarry Smith #include <petscdraw.h>
16236849ba73SBarry Smith static PetscErrorCode MatView_SeqBAIJ_Draw_Zoom(PetscDraw draw,void *Aa)
16243270192aSSatish Balay {
162577ed5343SBarry Smith   Mat               A = (Mat) Aa;
16263270192aSSatish Balay   Mat_SeqBAIJ       *a=(Mat_SeqBAIJ*)A->data;
1627d0f46423SBarry Smith   PetscInt          row,i,j,k,l,mbs=a->mbs,color,bs=A->rmap->bs,bs2=a->bs2;
16280e6d2581SBarry Smith   PetscReal         xl,yl,xr,yr,x_l,x_r,y_l,y_r;
16293f1db9ecSBarry Smith   MatScalar         *aa;
1630b0a32e0cSBarry Smith   PetscViewer       viewer;
1631b3e7f47fSJed Brown   PetscViewerFormat format;
16323270192aSSatish Balay 
16333a40ed3dSBarry Smith   PetscFunctionBegin;
16349566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)A,"Zoomviewer",(PetscObject*)&viewer));
16359566063dSJacob Faibussowitsch   PetscCall(PetscViewerGetFormat(viewer,&format));
16369566063dSJacob Faibussowitsch   PetscCall(PetscDrawGetCoordinates(draw,&xl,&yl,&xr,&yr));
163777ed5343SBarry Smith 
16383270192aSSatish Balay   /* loop over matrix elements drawing boxes */
1639b3e7f47fSJed Brown 
1640b3e7f47fSJed Brown   if (format != PETSC_VIEWER_DRAW_CONTOUR) {
16415f80ce2aSJacob Faibussowitsch     PetscErrorCode ierr;
16429566063dSJacob Faibussowitsch     ierr = PetscDrawCollectiveBegin(draw);PetscCall(ierr);
1643383922c3SLisandro Dalcin     /* Blue for negative, Cyan for zero and  Red for positive */
1644b0a32e0cSBarry Smith     color = PETSC_DRAW_BLUE;
16453270192aSSatish Balay     for (i=0,row=0; i<mbs; i++,row+=bs) {
16463270192aSSatish Balay       for (j=a->i[i]; j<a->i[i+1]; j++) {
1647d0f46423SBarry Smith         y_l = A->rmap->N - row - 1.0; y_r = y_l + 1.0;
16483270192aSSatish Balay         x_l = a->j[j]*bs; x_r = x_l + 1.0;
16493270192aSSatish Balay         aa  = a->a + j*bs2;
16503270192aSSatish Balay         for (k=0; k<bs; k++) {
16513270192aSSatish Balay           for (l=0; l<bs; l++) {
16520e6d2581SBarry Smith             if (PetscRealPart(*aa++) >=  0.) continue;
16539566063dSJacob Faibussowitsch             PetscCall(PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color));
16543270192aSSatish Balay           }
16553270192aSSatish Balay         }
16563270192aSSatish Balay       }
16573270192aSSatish Balay     }
1658b0a32e0cSBarry Smith     color = PETSC_DRAW_CYAN;
16593270192aSSatish Balay     for (i=0,row=0; i<mbs; i++,row+=bs) {
16603270192aSSatish Balay       for (j=a->i[i]; j<a->i[i+1]; j++) {
1661d0f46423SBarry Smith         y_l = A->rmap->N - row - 1.0; y_r = y_l + 1.0;
16623270192aSSatish Balay         x_l = a->j[j]*bs; x_r = x_l + 1.0;
16633270192aSSatish Balay         aa  = a->a + j*bs2;
16643270192aSSatish Balay         for (k=0; k<bs; k++) {
16653270192aSSatish Balay           for (l=0; l<bs; l++) {
16660e6d2581SBarry Smith             if (PetscRealPart(*aa++) != 0.) continue;
16679566063dSJacob Faibussowitsch             PetscCall(PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color));
16683270192aSSatish Balay           }
16693270192aSSatish Balay         }
16703270192aSSatish Balay       }
16713270192aSSatish Balay     }
1672b0a32e0cSBarry Smith     color = PETSC_DRAW_RED;
16733270192aSSatish Balay     for (i=0,row=0; i<mbs; i++,row+=bs) {
16743270192aSSatish Balay       for (j=a->i[i]; j<a->i[i+1]; j++) {
1675d0f46423SBarry Smith         y_l = A->rmap->N - row - 1.0; y_r = y_l + 1.0;
16763270192aSSatish Balay         x_l = a->j[j]*bs; x_r = x_l + 1.0;
16773270192aSSatish Balay         aa  = a->a + j*bs2;
16783270192aSSatish Balay         for (k=0; k<bs; k++) {
16793270192aSSatish Balay           for (l=0; l<bs; l++) {
16800e6d2581SBarry Smith             if (PetscRealPart(*aa++) <= 0.) continue;
16819566063dSJacob Faibussowitsch             PetscCall(PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color));
16823270192aSSatish Balay           }
16833270192aSSatish Balay         }
16843270192aSSatish Balay       }
16853270192aSSatish Balay     }
16869566063dSJacob Faibussowitsch     ierr = PetscDrawCollectiveEnd(draw);PetscCall(ierr);
1687b3e7f47fSJed Brown   } else {
1688b3e7f47fSJed Brown     /* use contour shading to indicate magnitude of values */
1689b3e7f47fSJed Brown     /* first determine max of all nonzero values */
1690b05fc000SLisandro Dalcin     PetscReal      minv = 0.0, maxv = 0.0;
1691b3e7f47fSJed Brown     PetscDraw      popup;
16925f80ce2aSJacob Faibussowitsch     PetscErrorCode ierr;
1693b3e7f47fSJed Brown 
1694b3e7f47fSJed Brown     for (i=0; i<a->nz*a->bs2; i++) {
1695b3e7f47fSJed Brown       if (PetscAbsScalar(a->a[i]) > maxv) maxv = PetscAbsScalar(a->a[i]);
1696b3e7f47fSJed Brown     }
1697383922c3SLisandro Dalcin     if (minv >= maxv) maxv = minv + PETSC_SMALL;
16989566063dSJacob Faibussowitsch     PetscCall(PetscDrawGetPopup(draw,&popup));
16999566063dSJacob Faibussowitsch     PetscCall(PetscDrawScalePopup(popup,0.0,maxv));
1700383922c3SLisandro Dalcin 
17019566063dSJacob Faibussowitsch     ierr = PetscDrawCollectiveBegin(draw);PetscCall(ierr);
1702b3e7f47fSJed Brown     for (i=0,row=0; i<mbs; i++,row+=bs) {
1703b3e7f47fSJed Brown       for (j=a->i[i]; j<a->i[i+1]; j++) {
1704b3e7f47fSJed Brown         y_l = A->rmap->N - row - 1.0; y_r = y_l + 1.0;
1705b3e7f47fSJed Brown         x_l = a->j[j]*bs; x_r = x_l + 1.0;
1706b3e7f47fSJed Brown         aa  = a->a + j*bs2;
1707b3e7f47fSJed Brown         for (k=0; k<bs; k++) {
1708b3e7f47fSJed Brown           for (l=0; l<bs; l++) {
1709383922c3SLisandro Dalcin             MatScalar v = *aa++;
1710383922c3SLisandro Dalcin             color = PetscDrawRealToColor(PetscAbsScalar(v),minv,maxv);
17119566063dSJacob Faibussowitsch             PetscCall(PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color));
1712b3e7f47fSJed Brown           }
1713b3e7f47fSJed Brown         }
1714b3e7f47fSJed Brown       }
1715b3e7f47fSJed Brown     }
17169566063dSJacob Faibussowitsch     ierr = PetscDrawCollectiveEnd(draw);PetscCall(ierr);
1717b3e7f47fSJed Brown   }
171877ed5343SBarry Smith   PetscFunctionReturn(0);
171977ed5343SBarry Smith }
17203270192aSSatish Balay 
17216849ba73SBarry Smith static PetscErrorCode MatView_SeqBAIJ_Draw(Mat A,PetscViewer viewer)
172277ed5343SBarry Smith {
17230e6d2581SBarry Smith   PetscReal      xl,yl,xr,yr,w,h;
1724b0a32e0cSBarry Smith   PetscDraw      draw;
1725ace3abfcSBarry Smith   PetscBool      isnull;
17263270192aSSatish Balay 
172777ed5343SBarry Smith   PetscFunctionBegin;
17289566063dSJacob Faibussowitsch   PetscCall(PetscViewerDrawGetDraw(viewer,0,&draw));
17299566063dSJacob Faibussowitsch   PetscCall(PetscDrawIsNull(draw,&isnull));
173045f3bb6eSLisandro Dalcin   if (isnull) PetscFunctionReturn(0);
173177ed5343SBarry Smith 
1732d0f46423SBarry Smith   xr   = A->cmap->n; yr = A->rmap->N; h = yr/10.0; w = xr/10.0;
173377ed5343SBarry Smith   xr  += w;          yr += h;        xl = -w;     yl = -h;
17349566063dSJacob Faibussowitsch   PetscCall(PetscDrawSetCoordinates(draw,xl,yl,xr,yr));
17359566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)A,"Zoomviewer",(PetscObject)viewer));
17369566063dSJacob Faibussowitsch   PetscCall(PetscDrawZoom(draw,MatView_SeqBAIJ_Draw_Zoom,A));
17379566063dSJacob Faibussowitsch   PetscCall(PetscObjectCompose((PetscObject)A,"Zoomviewer",NULL));
17389566063dSJacob Faibussowitsch   PetscCall(PetscDrawSave(draw));
17393a40ed3dSBarry Smith   PetscFunctionReturn(0);
17403270192aSSatish Balay }
17413270192aSSatish Balay 
1742dfbe8321SBarry Smith PetscErrorCode MatView_SeqBAIJ(Mat A,PetscViewer viewer)
17432593348eSBarry Smith {
1744ace3abfcSBarry Smith   PetscBool      iascii,isbinary,isdraw;
17452593348eSBarry Smith 
17463a40ed3dSBarry Smith   PetscFunctionBegin;
17479566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii));
17489566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary));
17499566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw));
175032077d6dSBarry Smith   if (iascii) {
17519566063dSJacob Faibussowitsch     PetscCall(MatView_SeqBAIJ_ASCII(A,viewer));
17520f5bd95cSBarry Smith   } else if (isbinary) {
17539566063dSJacob Faibussowitsch     PetscCall(MatView_SeqBAIJ_Binary(A,viewer));
17540f5bd95cSBarry Smith   } else if (isdraw) {
17559566063dSJacob Faibussowitsch     PetscCall(MatView_SeqBAIJ_Draw(A,viewer));
17565cd90555SBarry Smith   } else {
1757a5e6ed63SBarry Smith     Mat B;
17589566063dSJacob Faibussowitsch     PetscCall(MatConvert(A,MATSEQAIJ,MAT_INITIAL_MATRIX,&B));
17599566063dSJacob Faibussowitsch     PetscCall(MatView(B,viewer));
17609566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&B));
17612593348eSBarry Smith   }
17623a40ed3dSBarry Smith   PetscFunctionReturn(0);
17632593348eSBarry Smith }
1764b6490206SBarry Smith 
1765c1ac3661SBarry Smith PetscErrorCode MatGetValues_SeqBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],PetscScalar v[])
1766cd0e1443SSatish Balay {
1767cd0e1443SSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data;
1768c1ac3661SBarry Smith   PetscInt    *rp,k,low,high,t,row,nrow,i,col,l,*aj = a->j;
1769c1ac3661SBarry Smith   PetscInt    *ai = a->i,*ailen = a->ilen;
1770d0f46423SBarry Smith   PetscInt    brow,bcol,ridx,cidx,bs=A->rmap->bs,bs2=a->bs2;
177197e567efSBarry Smith   MatScalar   *ap,*aa = a->a;
1772cd0e1443SSatish Balay 
17733a40ed3dSBarry Smith   PetscFunctionBegin;
17742d61bbb3SSatish Balay   for (k=0; k<m; k++) { /* loop over rows */
1775cd0e1443SSatish Balay     row = im[k]; brow = row/bs;
177654c59aa7SJacob Faibussowitsch     if (row < 0) {v += n; continue;} /* negative row */
177754c59aa7SJacob Faibussowitsch     PetscCheck(row < A->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %" PetscInt_FMT " too large", row);
17782d61bbb3SSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow];
17792c3acbe9SBarry Smith     nrow = ailen[brow];
17802d61bbb3SSatish Balay     for (l=0; l<n; l++) { /* loop over columns */
178154c59aa7SJacob Faibussowitsch       if (in[l] < 0) {v++; continue;} /* negative column */
178254c59aa7SJacob Faibussowitsch       PetscCheck(in[l] < A->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column %" PetscInt_FMT " too large", in[l]);
17832d61bbb3SSatish Balay       col  = in[l];
17842d61bbb3SSatish Balay       bcol = col/bs;
17852d61bbb3SSatish Balay       cidx = col%bs;
17862d61bbb3SSatish Balay       ridx = row%bs;
17872d61bbb3SSatish Balay       high = nrow;
17882d61bbb3SSatish Balay       low  = 0; /* assume unsorted */
17892d61bbb3SSatish Balay       while (high-low > 5) {
1790cd0e1443SSatish Balay         t = (low+high)/2;
1791cd0e1443SSatish Balay         if (rp[t] > bcol) high = t;
1792cd0e1443SSatish Balay         else             low  = t;
1793cd0e1443SSatish Balay       }
1794cd0e1443SSatish Balay       for (i=low; i<high; i++) {
1795cd0e1443SSatish Balay         if (rp[i] > bcol) break;
1796cd0e1443SSatish Balay         if (rp[i] == bcol) {
17972d61bbb3SSatish Balay           *v++ = ap[bs2*i+bs*cidx+ridx];
17982d61bbb3SSatish Balay           goto finished;
1799cd0e1443SSatish Balay         }
1800cd0e1443SSatish Balay       }
180197e567efSBarry Smith       *v++ = 0.0;
18022d61bbb3SSatish Balay finished:;
1803cd0e1443SSatish Balay     }
1804cd0e1443SSatish Balay   }
18053a40ed3dSBarry Smith   PetscFunctionReturn(0);
1806cd0e1443SSatish Balay }
1807cd0e1443SSatish Balay 
1808dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is)
180992c4ed94SBarry Smith {
181092c4ed94SBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
1811e2ee6c50SBarry Smith   PetscInt          *rp,k,low,high,t,ii,jj,row,nrow,i,col,l,rmax,N,lastcol = -1;
1812c1ac3661SBarry Smith   PetscInt          *imax=a->imax,*ai=a->i,*ailen=a->ilen;
1813d0f46423SBarry Smith   PetscInt          *aj        =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs,stepval;
1814ace3abfcSBarry Smith   PetscBool         roworiented=a->roworiented;
1815dd6ea824SBarry Smith   const PetscScalar *value     = v;
18169d243f67SHong Zhang   MatScalar         *ap=NULL,*aa = a->a,*bap;
181792c4ed94SBarry Smith 
18183a40ed3dSBarry Smith   PetscFunctionBegin;
18190e324ae4SSatish Balay   if (roworiented) {
18200e324ae4SSatish Balay     stepval = (n-1)*bs;
18210e324ae4SSatish Balay   } else {
18220e324ae4SSatish Balay     stepval = (m-1)*bs;
18230e324ae4SSatish Balay   }
182492c4ed94SBarry Smith   for (k=0; k<m; k++) { /* loop over added rows */
182592c4ed94SBarry Smith     row = im[k];
18265ef9f2a5SBarry Smith     if (row < 0) continue;
18276bdcaf15SBarry Smith     PetscCheck(row < a->mbs,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block row index too large %" PetscInt_FMT " max %" PetscInt_FMT,row,a->mbs-1);
182892c4ed94SBarry Smith     rp   = aj + ai[row];
18297dc0baabSHong Zhang     if (!A->structure_only) ap = aa + bs2*ai[row];
183092c4ed94SBarry Smith     rmax = imax[row];
183192c4ed94SBarry Smith     nrow = ailen[row];
183292c4ed94SBarry Smith     low  = 0;
1833c71e6ed7SBarry Smith     high = nrow;
183492c4ed94SBarry Smith     for (l=0; l<n; l++) { /* loop over added columns */
18355ef9f2a5SBarry Smith       if (in[l] < 0) continue;
18366bdcaf15SBarry Smith       PetscCheck(in[l] < a->nbs,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block column index too large %" PetscInt_FMT " max %" PetscInt_FMT,in[l],a->nbs-1);
183792c4ed94SBarry Smith       col = in[l];
18387dc0baabSHong Zhang       if (!A->structure_only) {
183992c4ed94SBarry Smith         if (roworiented) {
184053ef36baSBarry Smith           value = v + (k*(stepval+bs) + l)*bs;
18410e324ae4SSatish Balay         } else {
184253ef36baSBarry Smith           value = v + (l*(stepval+bs) + k)*bs;
184392c4ed94SBarry Smith         }
18447dc0baabSHong Zhang       }
184526fbe8dcSKarl Rupp       if (col <= lastcol) low = 0;
184626fbe8dcSKarl Rupp       else high = nrow;
1847e2ee6c50SBarry Smith       lastcol = col;
184892c4ed94SBarry Smith       while (high-low > 7) {
184992c4ed94SBarry Smith         t = (low+high)/2;
185092c4ed94SBarry Smith         if (rp[t] > col) high = t;
185192c4ed94SBarry Smith         else             low  = t;
185292c4ed94SBarry Smith       }
185392c4ed94SBarry Smith       for (i=low; i<high; i++) {
185492c4ed94SBarry Smith         if (rp[i] > col) break;
185592c4ed94SBarry Smith         if (rp[i] == col) {
18567dc0baabSHong Zhang           if (A->structure_only) goto noinsert2;
18578a84c255SSatish Balay           bap = ap +  bs2*i;
18580e324ae4SSatish Balay           if (roworiented) {
18598a84c255SSatish Balay             if (is == ADD_VALUES) {
1860dd9472c6SBarry Smith               for (ii=0; ii<bs; ii++,value+=stepval) {
1861dd9472c6SBarry Smith                 for (jj=ii; jj<bs2; jj+=bs) {
18628a84c255SSatish Balay                   bap[jj] += *value++;
1863dd9472c6SBarry Smith                 }
1864dd9472c6SBarry Smith               }
18650e324ae4SSatish Balay             } else {
1866dd9472c6SBarry Smith               for (ii=0; ii<bs; ii++,value+=stepval) {
1867dd9472c6SBarry Smith                 for (jj=ii; jj<bs2; jj+=bs) {
18680e324ae4SSatish Balay                   bap[jj] = *value++;
18698a84c255SSatish Balay                 }
1870dd9472c6SBarry Smith               }
1871dd9472c6SBarry Smith             }
18720e324ae4SSatish Balay           } else {
18730e324ae4SSatish Balay             if (is == ADD_VALUES) {
187453ef36baSBarry Smith               for (ii=0; ii<bs; ii++,value+=bs+stepval) {
1875dd9472c6SBarry Smith                 for (jj=0; jj<bs; jj++) {
187653ef36baSBarry Smith                   bap[jj] += value[jj];
1877dd9472c6SBarry Smith                 }
187853ef36baSBarry Smith                 bap += bs;
1879dd9472c6SBarry Smith               }
18800e324ae4SSatish Balay             } else {
188153ef36baSBarry Smith               for (ii=0; ii<bs; ii++,value+=bs+stepval) {
1882dd9472c6SBarry Smith                 for (jj=0; jj<bs; jj++) {
188353ef36baSBarry Smith                   bap[jj]  = value[jj];
18840e324ae4SSatish Balay                 }
188553ef36baSBarry Smith                 bap += bs;
18868a84c255SSatish Balay               }
1887dd9472c6SBarry Smith             }
1888dd9472c6SBarry Smith           }
1889f1241b54SBarry Smith           goto noinsert2;
189092c4ed94SBarry Smith         }
189192c4ed94SBarry Smith       }
189289280ab3SLois Curfman McInnes       if (nonew == 1) goto noinsert2;
18935f80ce2aSJacob Faibussowitsch       PetscCheck(nonew != -1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new blocked index new nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", row, col);
18947dc0baabSHong Zhang       if (A->structure_only) {
18957dc0baabSHong Zhang         MatSeqXAIJReallocateAIJ_structure_only(A,a->mbs,bs2,nrow,row,col,rmax,ai,aj,rp,imax,nonew,MatScalar);
18967dc0baabSHong Zhang       } else {
1897fef13f97SBarry Smith         MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
18987dc0baabSHong Zhang       }
1899c03d1d03SSatish Balay       N = nrow++ - 1; high++;
190092c4ed94SBarry Smith       /* shift up all the later entries in this row */
19019566063dSJacob Faibussowitsch       PetscCall(PetscArraymove(rp+i+1,rp+i,N-i+1));
190292c4ed94SBarry Smith       rp[i] = col;
19037dc0baabSHong Zhang       if (!A->structure_only) {
19049566063dSJacob Faibussowitsch         PetscCall(PetscArraymove(ap+bs2*(i+1),ap+bs2*i,bs2*(N-i+1)));
19058a84c255SSatish Balay         bap   = ap +  bs2*i;
19060e324ae4SSatish Balay         if (roworiented) {
1907dd9472c6SBarry Smith           for (ii=0; ii<bs; ii++,value+=stepval) {
1908dd9472c6SBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
19090e324ae4SSatish Balay               bap[jj] = *value++;
1910dd9472c6SBarry Smith             }
1911dd9472c6SBarry Smith           }
19120e324ae4SSatish Balay         } else {
1913dd9472c6SBarry Smith           for (ii=0; ii<bs; ii++,value+=stepval) {
1914dd9472c6SBarry Smith             for (jj=0; jj<bs; jj++) {
19150e324ae4SSatish Balay               *bap++ = *value++;
19160e324ae4SSatish Balay             }
1917dd9472c6SBarry Smith           }
1918dd9472c6SBarry Smith         }
19197dc0baabSHong Zhang       }
1920f1241b54SBarry Smith noinsert2:;
192192c4ed94SBarry Smith       low = i;
192292c4ed94SBarry Smith     }
192392c4ed94SBarry Smith     ailen[row] = nrow;
192492c4ed94SBarry Smith   }
19253a40ed3dSBarry Smith   PetscFunctionReturn(0);
192692c4ed94SBarry Smith }
192726e093fcSHong Zhang 
1928dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_SeqBAIJ(Mat A,MatAssemblyType mode)
1929584200bdSSatish Balay {
1930584200bdSSatish Balay   Mat_SeqBAIJ    *a     = (Mat_SeqBAIJ*)A->data;
1931580bdb30SBarry Smith   PetscInt       fshift = 0,i,*ai = a->i,*aj = a->j,*imax = a->imax;
1932d0f46423SBarry Smith   PetscInt       m      = A->rmap->N,*ip,N,*ailen = a->ilen;
1933c1ac3661SBarry Smith   PetscInt       mbs  = a->mbs,bs2 = a->bs2,rmax = 0;
19343f1db9ecSBarry Smith   MatScalar      *aa  = a->a,*ap;
19353447b6efSHong Zhang   PetscReal      ratio=0.6;
1936584200bdSSatish Balay 
19373a40ed3dSBarry Smith   PetscFunctionBegin;
19383a40ed3dSBarry Smith   if (mode == MAT_FLUSH_ASSEMBLY) PetscFunctionReturn(0);
1939584200bdSSatish Balay 
194043ee02c3SBarry Smith   if (m) rmax = ailen[0];
1941584200bdSSatish Balay   for (i=1; i<mbs; i++) {
1942584200bdSSatish Balay     /* move each row back by the amount of empty slots (fshift) before it*/
1943584200bdSSatish Balay     fshift += imax[i-1] - ailen[i-1];
1944d402145bSBarry Smith     rmax    = PetscMax(rmax,ailen[i]);
1945584200bdSSatish Balay     if (fshift) {
1946580bdb30SBarry Smith       ip = aj + ai[i];
1947580bdb30SBarry Smith       ap = aa + bs2*ai[i];
1948584200bdSSatish Balay       N  = ailen[i];
19499566063dSJacob Faibussowitsch       PetscCall(PetscArraymove(ip-fshift,ip,N));
1950672ba085SHong Zhang       if (!A->structure_only) {
19519566063dSJacob Faibussowitsch         PetscCall(PetscArraymove(ap-bs2*fshift,ap,bs2*N));
1952584200bdSSatish Balay       }
1953672ba085SHong Zhang     }
1954584200bdSSatish Balay     ai[i] = ai[i-1] + ailen[i-1];
1955584200bdSSatish Balay   }
1956584200bdSSatish Balay   if (mbs) {
1957584200bdSSatish Balay     fshift += imax[mbs-1] - ailen[mbs-1];
1958584200bdSSatish Balay     ai[mbs] = ai[mbs-1] + ailen[mbs-1];
1959584200bdSSatish Balay   }
19607c565772SBarry Smith 
1961584200bdSSatish Balay   /* reset ilen and imax for each row */
19627c565772SBarry Smith   a->nonzerorowcnt = 0;
1963672ba085SHong Zhang   if (A->structure_only) {
19649566063dSJacob Faibussowitsch     PetscCall(PetscFree2(a->imax,a->ilen));
1965672ba085SHong Zhang   } else { /* !A->structure_only */
1966584200bdSSatish Balay     for (i=0; i<mbs; i++) {
1967584200bdSSatish Balay       ailen[i] = imax[i] = ai[i+1] - ai[i];
19687c565772SBarry Smith       a->nonzerorowcnt += ((ai[i+1] - ai[i]) > 0);
1969584200bdSSatish Balay     }
1970672ba085SHong Zhang   }
1971a7c10996SSatish Balay   a->nz = ai[mbs];
1972584200bdSSatish Balay 
1973584200bdSSatish Balay   /* diagonals may have moved, so kill the diagonal pointers */
1974b01c7715SBarry Smith   a->idiagvalid = PETSC_FALSE;
1975584200bdSSatish Balay   if (fshift && a->diag) {
19769566063dSJacob Faibussowitsch     PetscCall(PetscFree(a->diag));
19779566063dSJacob Faibussowitsch     PetscCall(PetscLogObjectMemory((PetscObject)A,-(mbs+1)*sizeof(PetscInt)));
1978f4259b30SLisandro Dalcin     a->diag = NULL;
1979584200bdSSatish Balay   }
19805f80ce2aSJacob Faibussowitsch   if (fshift) PetscCheck(a->nounused != -1,PETSC_COMM_SELF,PETSC_ERR_PLIB, "Unused space detected in matrix: %" PetscInt_FMT " X %" PetscInt_FMT " block size %" PetscInt_FMT ", %" PetscInt_FMT " unneeded", m, A->cmap->n, A->rmap->bs, fshift*bs2);
19819566063dSJacob Faibussowitsch   PetscCall(PetscInfo(A,"Matrix size: %" PetscInt_FMT " X %" PetscInt_FMT ", block size %" PetscInt_FMT "; storage space: %" PetscInt_FMT " unneeded, %" PetscInt_FMT " used\n",m,A->cmap->n,A->rmap->bs,fshift*bs2,a->nz*bs2));
19829566063dSJacob Faibussowitsch   PetscCall(PetscInfo(A,"Number of mallocs during MatSetValues is %" PetscInt_FMT "\n",a->reallocs));
19839566063dSJacob Faibussowitsch   PetscCall(PetscInfo(A,"Most nonzeros blocks in any row is %" PetscInt_FMT "\n",rmax));
198426fbe8dcSKarl Rupp 
19858e58a170SBarry Smith   A->info.mallocs    += a->reallocs;
1986e2f3b5e9SSatish Balay   a->reallocs         = 0;
19870e6d2581SBarry Smith   A->info.nz_unneeded = (PetscReal)fshift*bs2;
1988647a6520SHong Zhang   a->rmax             = rmax;
1989cf4441caSHong Zhang 
1990672ba085SHong Zhang   if (!A->structure_only) {
19919566063dSJacob Faibussowitsch     PetscCall(MatCheckCompressedRow(A,a->nonzerorowcnt,&a->compressedrow,a->i,mbs,ratio));
1992672ba085SHong Zhang   }
19933a40ed3dSBarry Smith   PetscFunctionReturn(0);
1994584200bdSSatish Balay }
1995584200bdSSatish Balay 
1996bea157c4SSatish Balay /*
1997bea157c4SSatish Balay    This function returns an array of flags which indicate the locations of contiguous
1998bea157c4SSatish Balay    blocks that should be zeroed. for eg: if bs = 3  and is = [0,1,2,3,5,6,7,8,9]
1999a5b23f4aSJose E. Roman    then the resulting sizes = [3,1,1,3,1] corresponding to sets [(0,1,2),(3),(5),(6,7,8),(9)]
2000bea157c4SSatish Balay    Assume: sizes should be long enough to hold all the values.
2001bea157c4SSatish Balay */
2002c1ac3661SBarry Smith static PetscErrorCode MatZeroRows_SeqBAIJ_Check_Blocks(PetscInt idx[],PetscInt n,PetscInt bs,PetscInt sizes[], PetscInt *bs_max)
2003d9b7c43dSSatish Balay {
2004c1ac3661SBarry Smith   PetscInt  i,j,k,row;
2005ace3abfcSBarry Smith   PetscBool flg;
20063a40ed3dSBarry Smith 
2007433994e6SBarry Smith   PetscFunctionBegin;
2008bea157c4SSatish Balay   for (i=0,j=0; i<n; j++) {
2009bea157c4SSatish Balay     row = idx[i];
2010a5b23f4aSJose E. Roman     if (row%bs!=0) { /* Not the beginning of a block */
2011bea157c4SSatish Balay       sizes[j] = 1;
2012bea157c4SSatish Balay       i++;
2013e4fda26cSSatish Balay     } else if (i+bs > n) { /* complete block doesn't exist (at idx end) */
2014bea157c4SSatish Balay       sizes[j] = 1;         /* Also makes sure atleast 'bs' values exist for next else */
2015bea157c4SSatish Balay       i++;
2016bea157c4SSatish Balay     } else { /* Begining of the block, so check if the complete block exists */
2017bea157c4SSatish Balay       flg = PETSC_TRUE;
2018bea157c4SSatish Balay       for (k=1; k<bs; k++) {
2019bea157c4SSatish Balay         if (row+k != idx[i+k]) { /* break in the block */
2020bea157c4SSatish Balay           flg = PETSC_FALSE;
2021bea157c4SSatish Balay           break;
2022d9b7c43dSSatish Balay         }
2023bea157c4SSatish Balay       }
2024abc0a331SBarry Smith       if (flg) { /* No break in the bs */
2025bea157c4SSatish Balay         sizes[j] = bs;
2026bea157c4SSatish Balay         i       += bs;
2027bea157c4SSatish Balay       } else {
2028bea157c4SSatish Balay         sizes[j] = 1;
2029bea157c4SSatish Balay         i++;
2030bea157c4SSatish Balay       }
2031bea157c4SSatish Balay     }
2032bea157c4SSatish Balay   }
2033bea157c4SSatish Balay   *bs_max = j;
20343a40ed3dSBarry Smith   PetscFunctionReturn(0);
2035d9b7c43dSSatish Balay }
2036d9b7c43dSSatish Balay 
20372b40b63fSBarry Smith PetscErrorCode MatZeroRows_SeqBAIJ(Mat A,PetscInt is_n,const PetscInt is_idx[],PetscScalar diag,Vec x, Vec b)
2038d9b7c43dSSatish Balay {
2039d9b7c43dSSatish Balay   Mat_SeqBAIJ       *baij=(Mat_SeqBAIJ*)A->data;
2040f4df32b1SMatthew Knepley   PetscInt          i,j,k,count,*rows;
2041d0f46423SBarry Smith   PetscInt          bs=A->rmap->bs,bs2=baij->bs2,*sizes,row,bs_max;
204287828ca2SBarry Smith   PetscScalar       zero = 0.0;
20433f1db9ecSBarry Smith   MatScalar         *aa;
204497b48c8fSBarry Smith   const PetscScalar *xx;
204597b48c8fSBarry Smith   PetscScalar       *bb;
2046d9b7c43dSSatish Balay 
20473a40ed3dSBarry Smith   PetscFunctionBegin;
204897b48c8fSBarry Smith   /* fix right hand side if needed */
204997b48c8fSBarry Smith   if (x && b) {
20509566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(x,&xx));
20519566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b,&bb));
205297b48c8fSBarry Smith     for (i=0; i<is_n; i++) {
205397b48c8fSBarry Smith       bb[is_idx[i]] = diag*xx[is_idx[i]];
205497b48c8fSBarry Smith     }
20559566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(x,&xx));
20569566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b,&bb));
205797b48c8fSBarry Smith   }
205897b48c8fSBarry Smith 
2059d9b7c43dSSatish Balay   /* Make a copy of the IS and  sort it */
2060bea157c4SSatish Balay   /* allocate memory for rows,sizes */
20619566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(is_n,&rows,2*is_n,&sizes));
2062bea157c4SSatish Balay 
2063563b5814SBarry Smith   /* copy IS values to rows, and sort them */
206426fbe8dcSKarl Rupp   for (i=0; i<is_n; i++) rows[i] = is_idx[i];
20659566063dSJacob Faibussowitsch   PetscCall(PetscSortInt(is_n,rows));
206697b48c8fSBarry Smith 
2067a9817697SBarry Smith   if (baij->keepnonzeropattern) {
206826fbe8dcSKarl Rupp     for (i=0; i<is_n; i++) sizes[i] = 1;
2069dffd3267SBarry Smith     bs_max          = is_n;
2070dffd3267SBarry Smith   } else {
20719566063dSJacob Faibussowitsch     PetscCall(MatZeroRows_SeqBAIJ_Check_Blocks(rows,is_n,bs,sizes,&bs_max));
2072e56f5c9eSBarry Smith     A->nonzerostate++;
2073dffd3267SBarry Smith   }
2074bea157c4SSatish Balay 
2075bea157c4SSatish Balay   for (i=0,j=0; i<bs_max; j+=sizes[i],i++) {
2076bea157c4SSatish Balay     row = rows[j];
20775f80ce2aSJacob Faibussowitsch     PetscCheck(row >= 0 && row <= A->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"row %" PetscInt_FMT " out of range",row);
2078bea157c4SSatish Balay     count = (baij->i[row/bs +1] - baij->i[row/bs])*bs;
2079b31fbe3bSSatish Balay     aa    = ((MatScalar*)(baij->a)) + baij->i[row/bs]*bs2 + (row%bs);
2080a9817697SBarry Smith     if (sizes[i] == bs && !baij->keepnonzeropattern) {
2081d4a378daSJed Brown       if (diag != (PetscScalar)0.0) {
2082bea157c4SSatish Balay         if (baij->ilen[row/bs] > 0) {
2083bea157c4SSatish Balay           baij->ilen[row/bs]       = 1;
2084bea157c4SSatish Balay           baij->j[baij->i[row/bs]] = row/bs;
208526fbe8dcSKarl Rupp 
20869566063dSJacob Faibussowitsch           PetscCall(PetscArrayzero(aa,count*bs));
2087a07cd24cSSatish Balay         }
2088563b5814SBarry Smith         /* Now insert all the diagonal values for this bs */
2089bea157c4SSatish Balay         for (k=0; k<bs; k++) {
20909566063dSJacob Faibussowitsch           PetscCall((*A->ops->setvalues)(A,1,rows+j+k,1,rows+j+k,&diag,INSERT_VALUES));
2091bea157c4SSatish Balay         }
2092f4df32b1SMatthew Knepley       } else { /* (diag == 0.0) */
2093bea157c4SSatish Balay         baij->ilen[row/bs] = 0;
2094f4df32b1SMatthew Knepley       } /* end (diag == 0.0) */
2095bea157c4SSatish Balay     } else { /* (sizes[i] != bs) */
20966bdcaf15SBarry Smith       PetscAssert(sizes[i] == 1,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Internal Error. Value should be 1");
2097bea157c4SSatish Balay       for (k=0; k<count; k++) {
2098d9b7c43dSSatish Balay         aa[0] =  zero;
2099d9b7c43dSSatish Balay         aa   += bs;
2100d9b7c43dSSatish Balay       }
2101d4a378daSJed Brown       if (diag != (PetscScalar)0.0) {
21029566063dSJacob Faibussowitsch         PetscCall((*A->ops->setvalues)(A,1,rows+j,1,rows+j,&diag,INSERT_VALUES));
2103d9b7c43dSSatish Balay       }
2104d9b7c43dSSatish Balay     }
2105bea157c4SSatish Balay   }
2106bea157c4SSatish Balay 
21079566063dSJacob Faibussowitsch   PetscCall(PetscFree2(rows,sizes));
21089566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd_SeqBAIJ(A,MAT_FINAL_ASSEMBLY));
21093a40ed3dSBarry Smith   PetscFunctionReturn(0);
2110d9b7c43dSSatish Balay }
21111c351548SSatish Balay 
211297b48c8fSBarry Smith PetscErrorCode MatZeroRowsColumns_SeqBAIJ(Mat A,PetscInt is_n,const PetscInt is_idx[],PetscScalar diag,Vec x, Vec b)
211397b48c8fSBarry Smith {
211497b48c8fSBarry Smith   Mat_SeqBAIJ       *baij=(Mat_SeqBAIJ*)A->data;
211597b48c8fSBarry Smith   PetscInt          i,j,k,count;
211697b48c8fSBarry Smith   PetscInt          bs   =A->rmap->bs,bs2=baij->bs2,row,col;
211797b48c8fSBarry Smith   PetscScalar       zero = 0.0;
211897b48c8fSBarry Smith   MatScalar         *aa;
211997b48c8fSBarry Smith   const PetscScalar *xx;
212097b48c8fSBarry Smith   PetscScalar       *bb;
212156777dd2SBarry Smith   PetscBool         *zeroed,vecs = PETSC_FALSE;
212297b48c8fSBarry Smith 
212397b48c8fSBarry Smith   PetscFunctionBegin;
212497b48c8fSBarry Smith   /* fix right hand side if needed */
212597b48c8fSBarry Smith   if (x && b) {
21269566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(x,&xx));
21279566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b,&bb));
212856777dd2SBarry Smith     vecs = PETSC_TRUE;
212997b48c8fSBarry Smith   }
213097b48c8fSBarry Smith 
213197b48c8fSBarry Smith   /* zero the columns */
21329566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(A->rmap->n,&zeroed));
213397b48c8fSBarry Smith   for (i=0; i<is_n; i++) {
21345f80ce2aSJacob Faibussowitsch     PetscCheck(is_idx[i] >= 0 && is_idx[i] < A->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"row %" PetscInt_FMT " out of range",is_idx[i]);
213597b48c8fSBarry Smith     zeroed[is_idx[i]] = PETSC_TRUE;
213697b48c8fSBarry Smith   }
213797b48c8fSBarry Smith   for (i=0; i<A->rmap->N; i++) {
213897b48c8fSBarry Smith     if (!zeroed[i]) {
213997b48c8fSBarry Smith       row = i/bs;
214097b48c8fSBarry Smith       for (j=baij->i[row]; j<baij->i[row+1]; j++) {
214197b48c8fSBarry Smith         for (k=0; k<bs; k++) {
214297b48c8fSBarry Smith           col = bs*baij->j[j] + k;
214397b48c8fSBarry Smith           if (zeroed[col]) {
214497b48c8fSBarry Smith             aa = ((MatScalar*)(baij->a)) + j*bs2 + (i%bs) + bs*k;
214556777dd2SBarry Smith             if (vecs) bb[i] -= aa[0]*xx[col];
214697b48c8fSBarry Smith             aa[0] = 0.0;
214797b48c8fSBarry Smith           }
214897b48c8fSBarry Smith         }
214997b48c8fSBarry Smith       }
215056777dd2SBarry Smith     } else if (vecs) bb[i] = diag*xx[i];
215197b48c8fSBarry Smith   }
21529566063dSJacob Faibussowitsch   PetscCall(PetscFree(zeroed));
215356777dd2SBarry Smith   if (vecs) {
21549566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(x,&xx));
21559566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b,&bb));
215656777dd2SBarry Smith   }
215797b48c8fSBarry Smith 
215897b48c8fSBarry Smith   /* zero the rows */
215997b48c8fSBarry Smith   for (i=0; i<is_n; i++) {
216097b48c8fSBarry Smith     row   = is_idx[i];
216197b48c8fSBarry Smith     count = (baij->i[row/bs +1] - baij->i[row/bs])*bs;
216297b48c8fSBarry Smith     aa    = ((MatScalar*)(baij->a)) + baij->i[row/bs]*bs2 + (row%bs);
216397b48c8fSBarry Smith     for (k=0; k<count; k++) {
216497b48c8fSBarry Smith       aa[0] =  zero;
216597b48c8fSBarry Smith       aa   += bs;
216697b48c8fSBarry Smith     }
2167d4a378daSJed Brown     if (diag != (PetscScalar)0.0) {
21689566063dSJacob Faibussowitsch       PetscCall((*A->ops->setvalues)(A,1,&row,1,&row,&diag,INSERT_VALUES));
216997b48c8fSBarry Smith     }
217097b48c8fSBarry Smith   }
21719566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd_SeqBAIJ(A,MAT_FINAL_ASSEMBLY));
217297b48c8fSBarry Smith   PetscFunctionReturn(0);
217397b48c8fSBarry Smith }
217497b48c8fSBarry Smith 
2175c1ac3661SBarry Smith PetscErrorCode MatSetValues_SeqBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is)
21762d61bbb3SSatish Balay {
21772d61bbb3SSatish Balay   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
2178e2ee6c50SBarry Smith   PetscInt       *rp,k,low,high,t,ii,row,nrow,i,col,l,rmax,N,lastcol = -1;
2179c1ac3661SBarry Smith   PetscInt       *imax=a->imax,*ai=a->i,*ailen=a->ilen;
2180d0f46423SBarry Smith   PetscInt       *aj  =a->j,nonew=a->nonew,bs=A->rmap->bs,brow,bcol;
2181c1ac3661SBarry Smith   PetscInt       ridx,cidx,bs2=a->bs2;
2182ace3abfcSBarry Smith   PetscBool      roworiented=a->roworiented;
2183d8cdefa3SHong Zhang   MatScalar      *ap=NULL,value=0.0,*aa=a->a,*bap;
21842d61bbb3SSatish Balay 
21852d61bbb3SSatish Balay   PetscFunctionBegin;
21862d61bbb3SSatish Balay   for (k=0; k<m; k++) { /* loop over added rows */
2187085a36d4SBarry Smith     row  = im[k];
2188085a36d4SBarry Smith     brow = row/bs;
21895ef9f2a5SBarry Smith     if (row < 0) continue;
21906bdcaf15SBarry Smith     PetscCheck(row < A->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT,row,A->rmap->N-1);
21912d61bbb3SSatish Balay     rp   = aj + ai[brow];
2192672ba085SHong Zhang     if (!A->structure_only) ap = aa + bs2*ai[brow];
21932d61bbb3SSatish Balay     rmax = imax[brow];
21942d61bbb3SSatish Balay     nrow = ailen[brow];
21952d61bbb3SSatish Balay     low  = 0;
2196c71e6ed7SBarry Smith     high = nrow;
21972d61bbb3SSatish Balay     for (l=0; l<n; l++) { /* loop over added columns */
21985ef9f2a5SBarry Smith       if (in[l] < 0) continue;
21996bdcaf15SBarry Smith       PetscCheck(in[l] < A->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT,in[l],A->cmap->n-1);
22002d61bbb3SSatish Balay       col  = in[l]; bcol = col/bs;
22012d61bbb3SSatish Balay       ridx = row % bs; cidx = col % bs;
2202672ba085SHong Zhang       if (!A->structure_only) {
22032d61bbb3SSatish Balay         if (roworiented) {
22045ef9f2a5SBarry Smith           value = v[l + k*n];
22052d61bbb3SSatish Balay         } else {
22062d61bbb3SSatish Balay           value = v[k + l*m];
22072d61bbb3SSatish Balay         }
2208672ba085SHong Zhang       }
22097cd84e04SBarry Smith       if (col <= lastcol) low = 0; else high = nrow;
2210e2ee6c50SBarry Smith       lastcol = col;
22112d61bbb3SSatish Balay       while (high-low > 7) {
22122d61bbb3SSatish Balay         t = (low+high)/2;
22132d61bbb3SSatish Balay         if (rp[t] > bcol) high = t;
22142d61bbb3SSatish Balay         else              low  = t;
22152d61bbb3SSatish Balay       }
22162d61bbb3SSatish Balay       for (i=low; i<high; i++) {
22172d61bbb3SSatish Balay         if (rp[i] > bcol) break;
22182d61bbb3SSatish Balay         if (rp[i] == bcol) {
22192d61bbb3SSatish Balay           bap = ap +  bs2*i + bs*cidx + ridx;
2220672ba085SHong Zhang           if (!A->structure_only) {
22212d61bbb3SSatish Balay             if (is == ADD_VALUES) *bap += value;
22222d61bbb3SSatish Balay             else                  *bap  = value;
2223672ba085SHong Zhang           }
22242d61bbb3SSatish Balay           goto noinsert1;
22252d61bbb3SSatish Balay         }
22262d61bbb3SSatish Balay       }
22272d61bbb3SSatish Balay       if (nonew == 1) goto noinsert1;
22285f80ce2aSJacob Faibussowitsch       PetscCheck(nonew != -1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", row, col);
2229672ba085SHong Zhang       if (A->structure_only) {
2230672ba085SHong Zhang         MatSeqXAIJReallocateAIJ_structure_only(A,a->mbs,bs2,nrow,brow,bcol,rmax,ai,aj,rp,imax,nonew,MatScalar);
2231672ba085SHong Zhang       } else {
2232fef13f97SBarry Smith         MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
2233672ba085SHong Zhang       }
2234c03d1d03SSatish Balay       N = nrow++ - 1; high++;
22352d61bbb3SSatish Balay       /* shift up all the later entries in this row */
22369566063dSJacob Faibussowitsch       PetscCall(PetscArraymove(rp+i+1,rp+i,N-i+1));
22372d61bbb3SSatish Balay       rp[i] = bcol;
2238580bdb30SBarry Smith       if (!A->structure_only) {
22399566063dSJacob Faibussowitsch         PetscCall(PetscArraymove(ap+bs2*(i+1),ap+bs2*i,bs2*(N-i+1)));
22409566063dSJacob Faibussowitsch         PetscCall(PetscArrayzero(ap+bs2*i,bs2));
2241580bdb30SBarry Smith         ap[bs2*i + bs*cidx + ridx] = value;
2242580bdb30SBarry Smith       }
2243085a36d4SBarry Smith       a->nz++;
2244e56f5c9eSBarry Smith       A->nonzerostate++;
22452d61bbb3SSatish Balay noinsert1:;
22462d61bbb3SSatish Balay       low = i;
22472d61bbb3SSatish Balay     }
22482d61bbb3SSatish Balay     ailen[brow] = nrow;
22492d61bbb3SSatish Balay   }
22502d61bbb3SSatish Balay   PetscFunctionReturn(0);
22512d61bbb3SSatish Balay }
22522d61bbb3SSatish Balay 
22530481f469SBarry Smith PetscErrorCode MatILUFactor_SeqBAIJ(Mat inA,IS row,IS col,const MatFactorInfo *info)
22542d61bbb3SSatish Balay {
22552d61bbb3SSatish Balay   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)inA->data;
22562d61bbb3SSatish Balay   Mat            outA;
2257ace3abfcSBarry Smith   PetscBool      row_identity,col_identity;
22582d61bbb3SSatish Balay 
22592d61bbb3SSatish Balay   PetscFunctionBegin;
22605f80ce2aSJacob Faibussowitsch   PetscCheck(info->levels == 0,PETSC_COMM_SELF,PETSC_ERR_SUP,"Only levels = 0 supported for in-place ILU");
22619566063dSJacob Faibussowitsch   PetscCall(ISIdentity(row,&row_identity));
22629566063dSJacob Faibussowitsch   PetscCall(ISIdentity(col,&col_identity));
22635f80ce2aSJacob Faibussowitsch   PetscCheck(row_identity && col_identity,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Row and column permutations must be identity for in-place ILU");
22642d61bbb3SSatish Balay 
22652d61bbb3SSatish Balay   outA            = inA;
2266d5f3da31SBarry Smith   inA->factortype = MAT_FACTOR_LU;
22679566063dSJacob Faibussowitsch   PetscCall(PetscFree(inA->solvertype));
22689566063dSJacob Faibussowitsch   PetscCall(PetscStrallocpy(MATSOLVERPETSC,&inA->solvertype));
22692d61bbb3SSatish Balay 
22709566063dSJacob Faibussowitsch   PetscCall(MatMarkDiagonal_SeqBAIJ(inA));
2271cf242676SKris Buschelman 
22729566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)row));
22739566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&a->row));
2274c3122656SLisandro Dalcin   a->row = row;
22759566063dSJacob Faibussowitsch   PetscCall(PetscObjectReference((PetscObject)col));
22769566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&a->col));
2277c3122656SLisandro Dalcin   a->col = col;
2278c38d4ed2SBarry Smith 
2279c38d4ed2SBarry Smith   /* Create the invert permutation so that it can be used in MatLUFactorNumeric() */
22809566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&a->icol));
22819566063dSJacob Faibussowitsch   PetscCall(ISInvertPermutation(col,PETSC_DECIDE,&a->icol));
22829566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectParent((PetscObject)inA,(PetscObject)a->icol));
2283c38d4ed2SBarry Smith 
22849566063dSJacob Faibussowitsch   PetscCall(MatSeqBAIJSetNumericFactorization_inplace(inA,(PetscBool)(row_identity && col_identity)));
2285c38d4ed2SBarry Smith   if (!a->solve_work) {
22869566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(inA->rmap->N+inA->rmap->bs,&a->solve_work));
22879566063dSJacob Faibussowitsch     PetscCall(PetscLogObjectMemory((PetscObject)inA,(inA->rmap->N+inA->rmap->bs)*sizeof(PetscScalar)));
2288c38d4ed2SBarry Smith   }
22899566063dSJacob Faibussowitsch   PetscCall(MatLUFactorNumeric(outA,inA,info));
22902d61bbb3SSatish Balay   PetscFunctionReturn(0);
22912d61bbb3SSatish Balay }
2292d9b7c43dSSatish Balay 
22937087cfbeSBarry Smith PetscErrorCode  MatSeqBAIJSetColumnIndices_SeqBAIJ(Mat mat,PetscInt *indices)
229427a8da17SBarry Smith {
229527a8da17SBarry Smith   Mat_SeqBAIJ *baij = (Mat_SeqBAIJ*)mat->data;
2296bdb1c0e1SJed Brown   PetscInt    i,nz,mbs;
229727a8da17SBarry Smith 
229827a8da17SBarry Smith   PetscFunctionBegin;
2299b32cb4a7SJed Brown   nz  = baij->maxnz;
2300bdb1c0e1SJed Brown   mbs = baij->mbs;
230127a8da17SBarry Smith   for (i=0; i<nz; i++) {
230227a8da17SBarry Smith     baij->j[i] = indices[i];
230327a8da17SBarry Smith   }
230427a8da17SBarry Smith   baij->nz = nz;
2305bdb1c0e1SJed Brown   for (i=0; i<mbs; i++) {
230627a8da17SBarry Smith     baij->ilen[i] = baij->imax[i];
230727a8da17SBarry Smith   }
230827a8da17SBarry Smith   PetscFunctionReturn(0);
230927a8da17SBarry Smith }
231027a8da17SBarry Smith 
231127a8da17SBarry Smith /*@
231227a8da17SBarry Smith     MatSeqBAIJSetColumnIndices - Set the column indices for all the rows
231327a8da17SBarry Smith        in the matrix.
231427a8da17SBarry Smith 
231527a8da17SBarry Smith   Input Parameters:
231627a8da17SBarry Smith +  mat - the SeqBAIJ matrix
231727a8da17SBarry Smith -  indices - the column indices
231827a8da17SBarry Smith 
231915091d37SBarry Smith   Level: advanced
232015091d37SBarry Smith 
232127a8da17SBarry Smith   Notes:
232227a8da17SBarry Smith     This can be called if you have precomputed the nonzero structure of the
232327a8da17SBarry Smith   matrix and want to provide it to the matrix object to improve the performance
232427a8da17SBarry Smith   of the MatSetValues() operation.
232527a8da17SBarry Smith 
232627a8da17SBarry Smith     You MUST have set the correct numbers of nonzeros per row in the call to
2327d1be2dadSMatthew Knepley   MatCreateSeqBAIJ(), and the columns indices MUST be sorted.
232827a8da17SBarry Smith 
232927a8da17SBarry Smith     MUST be called before any calls to MatSetValues();
233027a8da17SBarry Smith 
233127a8da17SBarry Smith @*/
23327087cfbeSBarry Smith PetscErrorCode  MatSeqBAIJSetColumnIndices(Mat mat,PetscInt *indices)
233327a8da17SBarry Smith {
233427a8da17SBarry Smith   PetscFunctionBegin;
23350700a824SBarry Smith   PetscValidHeaderSpecific(mat,MAT_CLASSID,1);
2336dadcf809SJacob Faibussowitsch   PetscValidIntPointer(indices,2);
2337*cac4c232SBarry Smith   PetscUseMethod(mat,"MatSeqBAIJSetColumnIndices_C",(Mat,PetscInt*),(mat,indices));
233827a8da17SBarry Smith   PetscFunctionReturn(0);
233927a8da17SBarry Smith }
234027a8da17SBarry Smith 
2341985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_SeqBAIJ(Mat A,Vec v,PetscInt idx[])
2342273d9f13SBarry Smith {
2343273d9f13SBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
2344c1ac3661SBarry Smith   PetscInt       i,j,n,row,bs,*ai,*aj,mbs;
2345273d9f13SBarry Smith   PetscReal      atmp;
234687828ca2SBarry Smith   PetscScalar    *x,zero = 0.0;
2347273d9f13SBarry Smith   MatScalar      *aa;
2348c1ac3661SBarry Smith   PetscInt       ncols,brow,krow,kcol;
2349273d9f13SBarry Smith 
2350273d9f13SBarry Smith   PetscFunctionBegin;
23515f80ce2aSJacob Faibussowitsch   /* why is this not a macro???????????????????????????????????????????????????????????????? */
23525f80ce2aSJacob Faibussowitsch   PetscCheck(!A->factortype,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
2353d0f46423SBarry Smith   bs  = A->rmap->bs;
2354273d9f13SBarry Smith   aa  = a->a;
2355273d9f13SBarry Smith   ai  = a->i;
2356273d9f13SBarry Smith   aj  = a->j;
2357273d9f13SBarry Smith   mbs = a->mbs;
2358273d9f13SBarry Smith 
23599566063dSJacob Faibussowitsch   PetscCall(VecSet(v,zero));
23609566063dSJacob Faibussowitsch   PetscCall(VecGetArray(v,&x));
23619566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(v,&n));
23625f80ce2aSJacob Faibussowitsch   PetscCheck(n == A->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector");
2363273d9f13SBarry Smith   for (i=0; i<mbs; i++) {
2364273d9f13SBarry Smith     ncols = ai[1] - ai[0]; ai++;
2365273d9f13SBarry Smith     brow  = bs*i;
2366273d9f13SBarry Smith     for (j=0; j<ncols; j++) {
2367273d9f13SBarry Smith       for (kcol=0; kcol<bs; kcol++) {
2368273d9f13SBarry Smith         for (krow=0; krow<bs; krow++) {
2369273d9f13SBarry Smith           atmp = PetscAbsScalar(*aa);aa++;
2370273d9f13SBarry Smith           row  = brow + krow;   /* row index */
2371985db425SBarry Smith           if (PetscAbsScalar(x[row]) < atmp) {x[row] = atmp; if (idx) idx[row] = bs*(*aj) + kcol;}
2372273d9f13SBarry Smith         }
2373273d9f13SBarry Smith       }
2374273d9f13SBarry Smith       aj++;
2375273d9f13SBarry Smith     }
2376273d9f13SBarry Smith   }
23779566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(v,&x));
2378273d9f13SBarry Smith   PetscFunctionReturn(0);
2379273d9f13SBarry Smith }
2380273d9f13SBarry Smith 
23813c896bc6SHong Zhang PetscErrorCode MatCopy_SeqBAIJ(Mat A,Mat B,MatStructure str)
23823c896bc6SHong Zhang {
23833c896bc6SHong Zhang   PetscFunctionBegin;
23843c896bc6SHong Zhang   /* If the two matrices have the same copy implementation, use fast copy. */
23853c896bc6SHong Zhang   if (str == SAME_NONZERO_PATTERN && (A->ops->copy == B->ops->copy)) {
23863c896bc6SHong Zhang     Mat_SeqBAIJ *a  = (Mat_SeqBAIJ*)A->data;
23873c896bc6SHong Zhang     Mat_SeqBAIJ *b  = (Mat_SeqBAIJ*)B->data;
2388d88c0aacSHong Zhang     PetscInt    ambs=a->mbs,bmbs=b->mbs,abs=A->rmap->bs,bbs=B->rmap->bs,bs2=abs*abs;
23893c896bc6SHong Zhang 
23905f80ce2aSJacob Faibussowitsch     PetscCheck(a->i[ambs] == b->i[bmbs],PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Number of nonzero blocks in matrices A %" PetscInt_FMT " and B %" PetscInt_FMT " are different",a->i[ambs],b->i[bmbs]);
23915f80ce2aSJacob Faibussowitsch     PetscCheck(abs == bbs,PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Block size A %" PetscInt_FMT " and B %" PetscInt_FMT " are different",abs,bbs);
23929566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(b->a,a->a,bs2*a->i[ambs]));
23939566063dSJacob Faibussowitsch     PetscCall(PetscObjectStateIncrease((PetscObject)B));
23943c896bc6SHong Zhang   } else {
23959566063dSJacob Faibussowitsch     PetscCall(MatCopy_Basic(A,B,str));
23963c896bc6SHong Zhang   }
23973c896bc6SHong Zhang   PetscFunctionReturn(0);
23983c896bc6SHong Zhang }
23993c896bc6SHong Zhang 
24004994cf47SJed Brown PetscErrorCode MatSetUp_SeqBAIJ(Mat A)
2401273d9f13SBarry Smith {
2402273d9f13SBarry Smith   PetscFunctionBegin;
24039566063dSJacob Faibussowitsch   PetscCall(MatSeqBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,NULL));
2404273d9f13SBarry Smith   PetscFunctionReturn(0);
2405273d9f13SBarry Smith }
2406273d9f13SBarry Smith 
2407cda14afcSprj- static PetscErrorCode MatSeqBAIJGetArray_SeqBAIJ(Mat A,PetscScalar *array[])
2408f2a5309cSSatish Balay {
2409f2a5309cSSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data;
24106e111a19SKarl Rupp 
2411f2a5309cSSatish Balay   PetscFunctionBegin;
2412f2a5309cSSatish Balay   *array = a->a;
2413f2a5309cSSatish Balay   PetscFunctionReturn(0);
2414f2a5309cSSatish Balay }
2415f2a5309cSSatish Balay 
2416cda14afcSprj- static PetscErrorCode MatSeqBAIJRestoreArray_SeqBAIJ(Mat A,PetscScalar *array[])
2417f2a5309cSSatish Balay {
2418f2a5309cSSatish Balay   PetscFunctionBegin;
2419cda14afcSprj-   *array = NULL;
2420f2a5309cSSatish Balay   PetscFunctionReturn(0);
2421f2a5309cSSatish Balay }
2422f2a5309cSSatish Balay 
242352768537SHong Zhang PetscErrorCode MatAXPYGetPreallocation_SeqBAIJ(Mat Y,Mat X,PetscInt *nnz)
242452768537SHong Zhang {
2425b264fe52SHong Zhang   PetscInt       bs = Y->rmap->bs,mbs = Y->rmap->N/bs;
242652768537SHong Zhang   Mat_SeqBAIJ    *x = (Mat_SeqBAIJ*)X->data;
242752768537SHong Zhang   Mat_SeqBAIJ    *y = (Mat_SeqBAIJ*)Y->data;
242852768537SHong Zhang 
242952768537SHong Zhang   PetscFunctionBegin;
243052768537SHong Zhang   /* Set the number of nonzeros in the new matrix */
24319566063dSJacob Faibussowitsch   PetscCall(MatAXPYGetPreallocation_SeqX_private(mbs,x->i,x->j,y->i,y->j,nnz));
243252768537SHong Zhang   PetscFunctionReturn(0);
243352768537SHong Zhang }
243452768537SHong Zhang 
2435f4df32b1SMatthew Knepley PetscErrorCode MatAXPY_SeqBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
243642ee4b1aSHong Zhang {
243742ee4b1aSHong Zhang   Mat_SeqBAIJ    *x = (Mat_SeqBAIJ*)X->data,*y = (Mat_SeqBAIJ*)Y->data;
243831ce2d13SHong Zhang   PetscInt       bs=Y->rmap->bs,bs2=bs*bs;
2439e838b9e7SJed Brown   PetscBLASInt   one=1;
244042ee4b1aSHong Zhang 
244142ee4b1aSHong Zhang   PetscFunctionBegin;
2442134adf20SPierre Jolivet   if (str == UNKNOWN_NONZERO_PATTERN || (PetscDefined(USE_DEBUG) && str == SAME_NONZERO_PATTERN)) {
2443134adf20SPierre Jolivet     PetscBool e = x->nz == y->nz && x->mbs == y->mbs && bs == X->rmap->bs ? PETSC_TRUE : PETSC_FALSE;
2444134adf20SPierre Jolivet     if (e) {
24459566063dSJacob Faibussowitsch       PetscCall(PetscArraycmp(x->i,y->i,x->mbs+1,&e));
2446134adf20SPierre Jolivet       if (e) {
24479566063dSJacob Faibussowitsch         PetscCall(PetscArraycmp(x->j,y->j,x->i[x->mbs],&e));
2448134adf20SPierre Jolivet         if (e) str = SAME_NONZERO_PATTERN;
2449134adf20SPierre Jolivet       }
2450134adf20SPierre Jolivet     }
245154c59aa7SJacob Faibussowitsch     if (!e) PetscCheck(str != SAME_NONZERO_PATTERN,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"MatStructure is not SAME_NONZERO_PATTERN");
2452134adf20SPierre Jolivet   }
245342ee4b1aSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
2454f4df32b1SMatthew Knepley     PetscScalar  alpha = a;
2455c5df96a5SBarry Smith     PetscBLASInt bnz;
24569566063dSJacob Faibussowitsch     PetscCall(PetscBLASIntCast(x->nz*bs2,&bnz));
24578b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one));
24589566063dSJacob Faibussowitsch     PetscCall(PetscObjectStateIncrease((PetscObject)Y));
2459ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
24609566063dSJacob Faibussowitsch     PetscCall(MatAXPY_Basic(Y,a,X,str));
246142ee4b1aSHong Zhang   } else {
246252768537SHong Zhang     Mat      B;
246352768537SHong Zhang     PetscInt *nnz;
246454c59aa7SJacob Faibussowitsch     PetscCheck(bs == X->rmap->bs,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size");
24659566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(Y->rmap->N,&nnz));
24669566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)Y),&B));
24679566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name));
24689566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N));
24699566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizesFromMats(B,Y,Y));
24709566063dSJacob Faibussowitsch     PetscCall(MatSetType(B,(MatType) ((PetscObject)Y)->type_name));
24719566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_SeqBAIJ(Y,X,nnz));
24729566063dSJacob Faibussowitsch     PetscCall(MatSeqBAIJSetPreallocation(B,bs,0,nnz));
24739566063dSJacob Faibussowitsch     PetscCall(MatAXPY_BasicWithPreallocation(B,Y,a,X,str));
24749566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(Y,&B));
24759566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz));
247642ee4b1aSHong Zhang   }
247742ee4b1aSHong Zhang   PetscFunctionReturn(0);
247842ee4b1aSHong Zhang }
247942ee4b1aSHong Zhang 
24802726fb6dSPierre Jolivet PETSC_INTERN PetscErrorCode MatConjugate_SeqBAIJ(Mat A)
24812726fb6dSPierre Jolivet {
24822726fb6dSPierre Jolivet #if defined(PETSC_USE_COMPLEX)
24832726fb6dSPierre Jolivet   Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data;
24842726fb6dSPierre Jolivet   PetscInt    i,nz = a->bs2*a->i[a->mbs];
24852726fb6dSPierre Jolivet   MatScalar   *aa = a->a;
24862726fb6dSPierre Jolivet 
24872726fb6dSPierre Jolivet   PetscFunctionBegin;
24882726fb6dSPierre Jolivet   for (i=0; i<nz; i++) aa[i] = PetscConj(aa[i]);
24892726fb6dSPierre Jolivet #else
24902726fb6dSPierre Jolivet   PetscFunctionBegin;
24912726fb6dSPierre Jolivet #endif
24922726fb6dSPierre Jolivet   PetscFunctionReturn(0);
24932726fb6dSPierre Jolivet }
24942726fb6dSPierre Jolivet 
249599cafbc1SBarry Smith PetscErrorCode MatRealPart_SeqBAIJ(Mat A)
249699cafbc1SBarry Smith {
249799cafbc1SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data;
249899cafbc1SBarry Smith   PetscInt    i,nz = a->bs2*a->i[a->mbs];
2499dd6ea824SBarry Smith   MatScalar   *aa = a->a;
250099cafbc1SBarry Smith 
250199cafbc1SBarry Smith   PetscFunctionBegin;
250299cafbc1SBarry Smith   for (i=0; i<nz; i++) aa[i] = PetscRealPart(aa[i]);
250399cafbc1SBarry Smith   PetscFunctionReturn(0);
250499cafbc1SBarry Smith }
250599cafbc1SBarry Smith 
250699cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_SeqBAIJ(Mat A)
250799cafbc1SBarry Smith {
250899cafbc1SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data;
250999cafbc1SBarry Smith   PetscInt    i,nz = a->bs2*a->i[a->mbs];
2510dd6ea824SBarry Smith   MatScalar   *aa = a->a;
251199cafbc1SBarry Smith 
251299cafbc1SBarry Smith   PetscFunctionBegin;
251399cafbc1SBarry Smith   for (i=0; i<nz; i++) aa[i] = PetscImaginaryPart(aa[i]);
251499cafbc1SBarry Smith   PetscFunctionReturn(0);
251599cafbc1SBarry Smith }
251699cafbc1SBarry Smith 
25173acb8795SBarry Smith /*
25182479783cSJose E. Roman     Code almost identical to MatGetColumnIJ_SeqAIJ() should share common code
25193acb8795SBarry Smith */
25201a83f524SJed Brown PetscErrorCode MatGetColumnIJ_SeqBAIJ(Mat A,PetscInt oshift,PetscBool symmetric,PetscBool inodecompressed,PetscInt *nn,const PetscInt *ia[],const PetscInt *ja[],PetscBool  *done)
25213acb8795SBarry Smith {
25223acb8795SBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
25233acb8795SBarry Smith   PetscInt       bs = A->rmap->bs,i,*collengths,*cia,*cja,n = A->cmap->n/bs,m = A->rmap->n/bs;
25243acb8795SBarry Smith   PetscInt       nz = a->i[m],row,*jj,mr,col;
25253acb8795SBarry Smith 
25263acb8795SBarry Smith   PetscFunctionBegin;
25273acb8795SBarry Smith   *nn = n;
25283acb8795SBarry Smith   if (!ia) PetscFunctionReturn(0);
25295f80ce2aSJacob Faibussowitsch   PetscCheck(!symmetric,PETSC_COMM_SELF,PETSC_ERR_SUP,"Not for BAIJ matrices");
2530e7e72b3dSBarry Smith   else {
25319566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(n,&collengths));
25329566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(n+1,&cia));
25339566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nz,&cja));
25343acb8795SBarry Smith     jj   = a->j;
25353acb8795SBarry Smith     for (i=0; i<nz; i++) {
25363acb8795SBarry Smith       collengths[jj[i]]++;
25373acb8795SBarry Smith     }
25383acb8795SBarry Smith     cia[0] = oshift;
25393acb8795SBarry Smith     for (i=0; i<n; i++) {
25403acb8795SBarry Smith       cia[i+1] = cia[i] + collengths[i];
25413acb8795SBarry Smith     }
25429566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(collengths,n));
25433acb8795SBarry Smith     jj   = a->j;
25443acb8795SBarry Smith     for (row=0; row<m; row++) {
25453acb8795SBarry Smith       mr = a->i[row+1] - a->i[row];
25463acb8795SBarry Smith       for (i=0; i<mr; i++) {
25473acb8795SBarry Smith         col = *jj++;
254826fbe8dcSKarl Rupp 
25493acb8795SBarry Smith         cja[cia[col] + collengths[col]++ - oshift] = row + oshift;
25503acb8795SBarry Smith       }
25513acb8795SBarry Smith     }
25529566063dSJacob Faibussowitsch     PetscCall(PetscFree(collengths));
25533acb8795SBarry Smith     *ia  = cia; *ja = cja;
25543acb8795SBarry Smith   }
25553acb8795SBarry Smith   PetscFunctionReturn(0);
25563acb8795SBarry Smith }
25573acb8795SBarry Smith 
25581a83f524SJed Brown PetscErrorCode MatRestoreColumnIJ_SeqBAIJ(Mat A,PetscInt oshift,PetscBool symmetric,PetscBool inodecompressed,PetscInt *n,const PetscInt *ia[],const PetscInt *ja[],PetscBool  *done)
25593acb8795SBarry Smith {
25603acb8795SBarry Smith   PetscFunctionBegin;
25613acb8795SBarry Smith   if (!ia) PetscFunctionReturn(0);
25629566063dSJacob Faibussowitsch   PetscCall(PetscFree(*ia));
25639566063dSJacob Faibussowitsch   PetscCall(PetscFree(*ja));
25643acb8795SBarry Smith   PetscFunctionReturn(0);
25653acb8795SBarry Smith }
25663acb8795SBarry Smith 
2567525d23c0SHong Zhang /*
2568525d23c0SHong Zhang  MatGetColumnIJ_SeqBAIJ_Color() and MatRestoreColumnIJ_SeqBAIJ_Color() are customized from
2569525d23c0SHong Zhang  MatGetColumnIJ_SeqBAIJ() and MatRestoreColumnIJ_SeqBAIJ() by adding an output
2570040ebd07SHong Zhang  spidx[], index of a->a, to be used in MatTransposeColoringCreate() and MatFDColoringCreate()
2571525d23c0SHong Zhang  */
2572525d23c0SHong Zhang PetscErrorCode MatGetColumnIJ_SeqBAIJ_Color(Mat A,PetscInt oshift,PetscBool symmetric,PetscBool inodecompressed,PetscInt *nn,const PetscInt *ia[],const PetscInt *ja[],PetscInt *spidx[],PetscBool  *done)
2573f6d58c54SBarry Smith {
2574525d23c0SHong Zhang   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
2575c0349474SHong Zhang   PetscInt       i,*collengths,*cia,*cja,n=a->nbs,m=a->mbs;
2576525d23c0SHong Zhang   PetscInt       nz = a->i[m],row,*jj,mr,col;
2577525d23c0SHong Zhang   PetscInt       *cspidx;
2578f6d58c54SBarry Smith 
2579f6d58c54SBarry Smith   PetscFunctionBegin;
2580525d23c0SHong Zhang   *nn = n;
2581525d23c0SHong Zhang   if (!ia) PetscFunctionReturn(0);
2582f6d58c54SBarry Smith 
25839566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(n,&collengths));
25849566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(n+1,&cia));
25859566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz,&cja));
25869566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz,&cspidx));
2587525d23c0SHong Zhang   jj   = a->j;
2588525d23c0SHong Zhang   for (i=0; i<nz; i++) {
2589525d23c0SHong Zhang     collengths[jj[i]]++;
2590f6d58c54SBarry Smith   }
2591525d23c0SHong Zhang   cia[0] = oshift;
2592525d23c0SHong Zhang   for (i=0; i<n; i++) {
2593525d23c0SHong Zhang     cia[i+1] = cia[i] + collengths[i];
2594525d23c0SHong Zhang   }
25959566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(collengths,n));
2596525d23c0SHong Zhang   jj   = a->j;
2597525d23c0SHong Zhang   for (row=0; row<m; row++) {
2598525d23c0SHong Zhang     mr = a->i[row+1] - a->i[row];
2599525d23c0SHong Zhang     for (i=0; i<mr; i++) {
2600525d23c0SHong Zhang       col = *jj++;
2601525d23c0SHong Zhang       cspidx[cia[col] + collengths[col] - oshift] = a->i[row] + i; /* index of a->j */
2602525d23c0SHong Zhang       cja[cia[col] + collengths[col]++ - oshift]  = row + oshift;
2603525d23c0SHong Zhang     }
2604525d23c0SHong Zhang   }
26059566063dSJacob Faibussowitsch   PetscCall(PetscFree(collengths));
2606071fcb05SBarry Smith   *ia    = cia;
2607071fcb05SBarry Smith   *ja    = cja;
2608525d23c0SHong Zhang   *spidx = cspidx;
2609525d23c0SHong Zhang   PetscFunctionReturn(0);
2610f6d58c54SBarry Smith }
2611f6d58c54SBarry Smith 
2612525d23c0SHong Zhang PetscErrorCode MatRestoreColumnIJ_SeqBAIJ_Color(Mat A,PetscInt oshift,PetscBool symmetric,PetscBool inodecompressed,PetscInt *n,const PetscInt *ia[],const PetscInt *ja[],PetscInt *spidx[],PetscBool  *done)
2613525d23c0SHong Zhang {
2614525d23c0SHong Zhang   PetscFunctionBegin;
26159566063dSJacob Faibussowitsch   PetscCall(MatRestoreColumnIJ_SeqBAIJ(A,oshift,symmetric,inodecompressed,n,ia,ja,done));
26169566063dSJacob Faibussowitsch   PetscCall(PetscFree(*spidx));
2617f6d58c54SBarry Smith   PetscFunctionReturn(0);
2618f6d58c54SBarry Smith }
261999cafbc1SBarry Smith 
26207d68702bSBarry Smith PetscErrorCode MatShift_SeqBAIJ(Mat Y,PetscScalar a)
26217d68702bSBarry Smith {
26227d68702bSBarry Smith   Mat_SeqBAIJ     *aij = (Mat_SeqBAIJ*)Y->data;
26237d68702bSBarry Smith 
26247d68702bSBarry Smith   PetscFunctionBegin;
26256f33a894SBarry Smith   if (!Y->preallocated || !aij->nz) {
26269566063dSJacob Faibussowitsch     PetscCall(MatSeqBAIJSetPreallocation(Y,Y->rmap->bs,1,NULL));
26277d68702bSBarry Smith   }
26289566063dSJacob Faibussowitsch   PetscCall(MatShift_Basic(Y,a));
26297d68702bSBarry Smith   PetscFunctionReturn(0);
26307d68702bSBarry Smith }
26317d68702bSBarry Smith 
26322593348eSBarry Smith /* -------------------------------------------------------------------*/
26333964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_SeqBAIJ,
2634cc2dc46cSBarry Smith                                        MatGetRow_SeqBAIJ,
2635cc2dc46cSBarry Smith                                        MatRestoreRow_SeqBAIJ,
2636cc2dc46cSBarry Smith                                        MatMult_SeqBAIJ_N,
263797304618SKris Buschelman                                /* 4*/  MatMultAdd_SeqBAIJ_N,
26387c922b88SBarry Smith                                        MatMultTranspose_SeqBAIJ,
26397c922b88SBarry Smith                                        MatMultTransposeAdd_SeqBAIJ,
2640f4259b30SLisandro Dalcin                                        NULL,
2641f4259b30SLisandro Dalcin                                        NULL,
2642f4259b30SLisandro Dalcin                                        NULL,
2643f4259b30SLisandro Dalcin                                /* 10*/ NULL,
2644cc2dc46cSBarry Smith                                        MatLUFactor_SeqBAIJ,
2645f4259b30SLisandro Dalcin                                        NULL,
2646f4259b30SLisandro Dalcin                                        NULL,
2647f2501298SSatish Balay                                        MatTranspose_SeqBAIJ,
264897304618SKris Buschelman                                /* 15*/ MatGetInfo_SeqBAIJ,
2649cc2dc46cSBarry Smith                                        MatEqual_SeqBAIJ,
2650cc2dc46cSBarry Smith                                        MatGetDiagonal_SeqBAIJ,
2651cc2dc46cSBarry Smith                                        MatDiagonalScale_SeqBAIJ,
2652cc2dc46cSBarry Smith                                        MatNorm_SeqBAIJ,
2653f4259b30SLisandro Dalcin                                /* 20*/ NULL,
2654cc2dc46cSBarry Smith                                        MatAssemblyEnd_SeqBAIJ,
2655cc2dc46cSBarry Smith                                        MatSetOption_SeqBAIJ,
2656cc2dc46cSBarry Smith                                        MatZeroEntries_SeqBAIJ,
2657d519adbfSMatthew Knepley                                /* 24*/ MatZeroRows_SeqBAIJ,
2658f4259b30SLisandro Dalcin                                        NULL,
2659f4259b30SLisandro Dalcin                                        NULL,
2660f4259b30SLisandro Dalcin                                        NULL,
2661f4259b30SLisandro Dalcin                                        NULL,
26624994cf47SJed Brown                                /* 29*/ MatSetUp_SeqBAIJ,
2663f4259b30SLisandro Dalcin                                        NULL,
2664f4259b30SLisandro Dalcin                                        NULL,
2665f4259b30SLisandro Dalcin                                        NULL,
2666f4259b30SLisandro Dalcin                                        NULL,
2667d519adbfSMatthew Knepley                                /* 34*/ MatDuplicate_SeqBAIJ,
2668f4259b30SLisandro Dalcin                                        NULL,
2669f4259b30SLisandro Dalcin                                        NULL,
2670cc2dc46cSBarry Smith                                        MatILUFactor_SeqBAIJ,
2671f4259b30SLisandro Dalcin                                        NULL,
2672d519adbfSMatthew Knepley                                /* 39*/ MatAXPY_SeqBAIJ,
26737dae84e0SHong Zhang                                        MatCreateSubMatrices_SeqBAIJ,
2674cc2dc46cSBarry Smith                                        MatIncreaseOverlap_SeqBAIJ,
2675cc2dc46cSBarry Smith                                        MatGetValues_SeqBAIJ,
26763c896bc6SHong Zhang                                        MatCopy_SeqBAIJ,
2677f4259b30SLisandro Dalcin                                /* 44*/ NULL,
2678cc2dc46cSBarry Smith                                        MatScale_SeqBAIJ,
26797d68702bSBarry Smith                                        MatShift_SeqBAIJ,
2680f4259b30SLisandro Dalcin                                        NULL,
268197b48c8fSBarry Smith                                        MatZeroRowsColumns_SeqBAIJ,
2682f4259b30SLisandro Dalcin                                /* 49*/ NULL,
26833b2fbd54SBarry Smith                                        MatGetRowIJ_SeqBAIJ,
268492c4ed94SBarry Smith                                        MatRestoreRowIJ_SeqBAIJ,
26853acb8795SBarry Smith                                        MatGetColumnIJ_SeqBAIJ,
26863acb8795SBarry Smith                                        MatRestoreColumnIJ_SeqBAIJ,
268793dfae19SHong Zhang                                /* 54*/ MatFDColoringCreate_SeqXAIJ,
2688f4259b30SLisandro Dalcin                                        NULL,
2689f4259b30SLisandro Dalcin                                        NULL,
2690090001bdSToby Isaac                                        NULL,
2691d3825aa8SBarry Smith                                        MatSetValuesBlocked_SeqBAIJ,
26927dae84e0SHong Zhang                                /* 59*/ MatCreateSubMatrix_SeqBAIJ,
2693b9b97703SBarry Smith                                        MatDestroy_SeqBAIJ,
2694b9b97703SBarry Smith                                        MatView_SeqBAIJ,
2695f4259b30SLisandro Dalcin                                        NULL,
2696f4259b30SLisandro Dalcin                                        NULL,
2697f4259b30SLisandro Dalcin                                /* 64*/ NULL,
2698f4259b30SLisandro Dalcin                                        NULL,
2699f4259b30SLisandro Dalcin                                        NULL,
2700f4259b30SLisandro Dalcin                                        NULL,
2701f4259b30SLisandro Dalcin                                        NULL,
2702d519adbfSMatthew Knepley                                /* 69*/ MatGetRowMaxAbs_SeqBAIJ,
2703f4259b30SLisandro Dalcin                                        NULL,
2704c87e5d42SMatthew Knepley                                        MatConvert_Basic,
2705f4259b30SLisandro Dalcin                                        NULL,
2706f4259b30SLisandro Dalcin                                        NULL,
2707f4259b30SLisandro Dalcin                                /* 74*/ NULL,
2708f6d58c54SBarry Smith                                        MatFDColoringApply_BAIJ,
2709f4259b30SLisandro Dalcin                                        NULL,
2710f4259b30SLisandro Dalcin                                        NULL,
2711f4259b30SLisandro Dalcin                                        NULL,
2712f4259b30SLisandro Dalcin                                /* 79*/ NULL,
2713f4259b30SLisandro Dalcin                                        NULL,
2714f4259b30SLisandro Dalcin                                        NULL,
2715f4259b30SLisandro Dalcin                                        NULL,
27165bba2384SShri Abhyankar                                        MatLoad_SeqBAIJ,
2717f4259b30SLisandro Dalcin                                /* 84*/ NULL,
2718f4259b30SLisandro Dalcin                                        NULL,
2719f4259b30SLisandro Dalcin                                        NULL,
2720f4259b30SLisandro Dalcin                                        NULL,
2721f4259b30SLisandro Dalcin                                        NULL,
2722f4259b30SLisandro Dalcin                                /* 89*/ NULL,
2723f4259b30SLisandro Dalcin                                        NULL,
2724f4259b30SLisandro Dalcin                                        NULL,
2725f4259b30SLisandro Dalcin                                        NULL,
2726f4259b30SLisandro Dalcin                                        NULL,
2727f4259b30SLisandro Dalcin                                /* 94*/ NULL,
2728f4259b30SLisandro Dalcin                                        NULL,
2729f4259b30SLisandro Dalcin                                        NULL,
2730f4259b30SLisandro Dalcin                                        NULL,
2731f4259b30SLisandro Dalcin                                        NULL,
2732f4259b30SLisandro Dalcin                                /* 99*/ NULL,
2733f4259b30SLisandro Dalcin                                        NULL,
2734f4259b30SLisandro Dalcin                                        NULL,
27352726fb6dSPierre Jolivet                                        MatConjugate_SeqBAIJ,
2736f4259b30SLisandro Dalcin                                        NULL,
2737f4259b30SLisandro Dalcin                                /*104*/ NULL,
273899cafbc1SBarry Smith                                        MatRealPart_SeqBAIJ,
27392af78befSBarry Smith                                        MatImaginaryPart_SeqBAIJ,
2740f4259b30SLisandro Dalcin                                        NULL,
2741f4259b30SLisandro Dalcin                                        NULL,
2742f4259b30SLisandro Dalcin                                /*109*/ NULL,
2743f4259b30SLisandro Dalcin                                        NULL,
2744f4259b30SLisandro Dalcin                                        NULL,
2745f4259b30SLisandro Dalcin                                        NULL,
2746547795f9SHong Zhang                                        MatMissingDiagonal_SeqBAIJ,
2747f4259b30SLisandro Dalcin                                /*114*/ NULL,
2748f4259b30SLisandro Dalcin                                        NULL,
2749f4259b30SLisandro Dalcin                                        NULL,
2750f4259b30SLisandro Dalcin                                        NULL,
2751f4259b30SLisandro Dalcin                                        NULL,
2752f4259b30SLisandro Dalcin                                /*119*/ NULL,
2753f4259b30SLisandro Dalcin                                        NULL,
2754547795f9SHong Zhang                                        MatMultHermitianTranspose_SeqBAIJ,
2755d6037b41SHong Zhang                                        MatMultHermitianTransposeAdd_SeqBAIJ,
2756f4259b30SLisandro Dalcin                                        NULL,
2757f4259b30SLisandro Dalcin                                /*124*/ NULL,
2758857cbf51SRichard Tran Mills                                        MatGetColumnReductions_SeqBAIJ,
27593964eb88SJed Brown                                        MatInvertBlockDiagonal_SeqBAIJ,
2760f4259b30SLisandro Dalcin                                        NULL,
2761f4259b30SLisandro Dalcin                                        NULL,
2762f4259b30SLisandro Dalcin                                /*129*/ NULL,
2763f4259b30SLisandro Dalcin                                        NULL,
2764f4259b30SLisandro Dalcin                                        NULL,
2765f4259b30SLisandro Dalcin                                        NULL,
2766f4259b30SLisandro Dalcin                                        NULL,
2767f4259b30SLisandro Dalcin                                /*134*/ NULL,
2768f4259b30SLisandro Dalcin                                        NULL,
2769f4259b30SLisandro Dalcin                                        NULL,
2770f4259b30SLisandro Dalcin                                        NULL,
2771f4259b30SLisandro Dalcin                                        NULL,
277246533700Sstefano_zampini                                /*139*/ MatSetBlockSizes_Default,
2773f4259b30SLisandro Dalcin                                        NULL,
2774f4259b30SLisandro Dalcin                                        NULL,
2775bdf6f3fcSHong Zhang                                        MatFDColoringSetUp_SeqXAIJ,
2776f4259b30SLisandro Dalcin                                        NULL,
277786e85357SHong Zhang                                 /*144*/MatCreateMPIMatConcatenateSeqMat_SeqBAIJ,
2778d70f29a3SPierre Jolivet                                        MatDestroySubMatrices_SeqBAIJ,
2779d70f29a3SPierre Jolivet                                        NULL,
2780d70f29a3SPierre Jolivet                                        NULL
278199cafbc1SBarry Smith };
27822593348eSBarry Smith 
27837087cfbeSBarry Smith PetscErrorCode  MatStoreValues_SeqBAIJ(Mat mat)
27843e90b805SBarry Smith {
27853e90b805SBarry Smith   Mat_SeqBAIJ    *aij = (Mat_SeqBAIJ*)mat->data;
27868ece6314SShri Abhyankar   PetscInt       nz   = aij->i[aij->mbs]*aij->bs2;
27873e90b805SBarry Smith 
27883e90b805SBarry Smith   PetscFunctionBegin;
27895f80ce2aSJacob Faibussowitsch   PetscCheck(aij->nonew == 1,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first");
27903e90b805SBarry Smith 
27913e90b805SBarry Smith   /* allocate space for values if not already there */
27923e90b805SBarry Smith   if (!aij->saved_values) {
27939566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nz+1,&aij->saved_values));
27949566063dSJacob Faibussowitsch     PetscCall(PetscLogObjectMemory((PetscObject)mat,(nz+1)*sizeof(PetscScalar)));
27953e90b805SBarry Smith   }
27963e90b805SBarry Smith 
27973e90b805SBarry Smith   /* copy values over */
27989566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(aij->saved_values,aij->a,nz));
27993e90b805SBarry Smith   PetscFunctionReturn(0);
28003e90b805SBarry Smith }
28013e90b805SBarry Smith 
28027087cfbeSBarry Smith PetscErrorCode  MatRetrieveValues_SeqBAIJ(Mat mat)
28033e90b805SBarry Smith {
28043e90b805SBarry Smith   Mat_SeqBAIJ    *aij = (Mat_SeqBAIJ*)mat->data;
28058ece6314SShri Abhyankar   PetscInt       nz = aij->i[aij->mbs]*aij->bs2;
28063e90b805SBarry Smith 
28073e90b805SBarry Smith   PetscFunctionBegin;
28085f80ce2aSJacob Faibussowitsch   PetscCheck(aij->nonew == 1,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first");
28095f80ce2aSJacob Faibussowitsch   PetscCheck(aij->saved_values,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatStoreValues(A);first");
28103e90b805SBarry Smith 
28113e90b805SBarry Smith   /* copy values over */
28129566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(aij->a,aij->saved_values,nz));
28133e90b805SBarry Smith   PetscFunctionReturn(0);
28143e90b805SBarry Smith }
28153e90b805SBarry Smith 
2816cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqAIJ(Mat, MatType,MatReuse,Mat*);
2817cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqSBAIJ(Mat, MatType,MatReuse,Mat*);
2818273d9f13SBarry Smith 
2819b5b72c8aSIrina Sokolova PetscErrorCode  MatSeqBAIJSetPreallocation_SeqBAIJ(Mat B,PetscInt bs,PetscInt nz,PetscInt *nnz)
2820a23d5eceSKris Buschelman {
2821a23d5eceSKris Buschelman   Mat_SeqBAIJ    *b;
28226849ba73SBarry Smith   PetscErrorCode ierr;
2823535b19f3SBarry Smith   PetscInt       i,mbs,nbs,bs2;
28248afaa268SBarry Smith   PetscBool      flg = PETSC_FALSE,skipallocation = PETSC_FALSE,realalloc = PETSC_FALSE;
2825a23d5eceSKris Buschelman 
2826a23d5eceSKris Buschelman   PetscFunctionBegin;
28272576faa2SJed Brown   if (nz >= 0 || nnz) realalloc = PETSC_TRUE;
2828ab93d7beSBarry Smith   if (nz == MAT_SKIP_ALLOCATION) {
2829ab93d7beSBarry Smith     skipallocation = PETSC_TRUE;
2830ab93d7beSBarry Smith     nz             = 0;
2831ab93d7beSBarry Smith   }
28328c07d4e3SBarry Smith 
28339566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSize(B,PetscAbs(bs)));
28349566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
28359566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
28369566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetBlockSize(B->rmap,&bs));
2837899cda47SBarry Smith 
2838899cda47SBarry Smith   B->preallocated = PETSC_TRUE;
2839899cda47SBarry Smith 
2840d0f46423SBarry Smith   mbs = B->rmap->n/bs;
2841d0f46423SBarry Smith   nbs = B->cmap->n/bs;
2842a23d5eceSKris Buschelman   bs2 = bs*bs;
2843a23d5eceSKris Buschelman 
28445f80ce2aSJacob Faibussowitsch   PetscCheck(mbs*bs==B->rmap->n && nbs*bs==B->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Number rows %" PetscInt_FMT ", cols %" PetscInt_FMT " must be divisible by blocksize %" PetscInt_FMT,B->rmap->N,B->cmap->n,bs);
2845a23d5eceSKris Buschelman 
2846a23d5eceSKris Buschelman   if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 5;
28475f80ce2aSJacob Faibussowitsch   PetscCheck(nz >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"nz cannot be less than 0: value %" PetscInt_FMT,nz);
2848a23d5eceSKris Buschelman   if (nnz) {
2849a23d5eceSKris Buschelman     for (i=0; i<mbs; i++) {
28505f80ce2aSJacob Faibussowitsch       PetscCheck(nnz[i] >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"nnz cannot be less than 0: local row %" PetscInt_FMT " value %" PetscInt_FMT,i,nnz[i]);
28515f80ce2aSJacob Faibussowitsch       PetscCheck(nnz[i] <= nbs,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"nnz cannot be greater than block row length: local row %" PetscInt_FMT " value %" PetscInt_FMT " rowlength %" PetscInt_FMT,i,nnz[i],nbs);
2852a23d5eceSKris Buschelman     }
2853a23d5eceSKris Buschelman   }
2854a23d5eceSKris Buschelman 
2855a23d5eceSKris Buschelman   b    = (Mat_SeqBAIJ*)B->data;
28569566063dSJacob Faibussowitsch   ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Optimize options for SEQBAIJ matrix 2 ","Mat");PetscCall(ierr);
28579566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool("-mat_no_unroll","Do not optimize for block size (slow)",NULL,flg,&flg,NULL));
28589566063dSJacob Faibussowitsch   ierr = PetscOptionsEnd();PetscCall(ierr);
28598c07d4e3SBarry Smith 
2860a23d5eceSKris Buschelman   if (!flg) {
2861a23d5eceSKris Buschelman     switch (bs) {
2862a23d5eceSKris Buschelman     case 1:
2863a23d5eceSKris Buschelman       B->ops->mult    = MatMult_SeqBAIJ_1;
2864a23d5eceSKris Buschelman       B->ops->multadd = MatMultAdd_SeqBAIJ_1;
2865a23d5eceSKris Buschelman       break;
2866a23d5eceSKris Buschelman     case 2:
2867a23d5eceSKris Buschelman       B->ops->mult    = MatMult_SeqBAIJ_2;
2868a23d5eceSKris Buschelman       B->ops->multadd = MatMultAdd_SeqBAIJ_2;
2869a23d5eceSKris Buschelman       break;
2870a23d5eceSKris Buschelman     case 3:
2871a23d5eceSKris Buschelman       B->ops->mult    = MatMult_SeqBAIJ_3;
2872a23d5eceSKris Buschelman       B->ops->multadd = MatMultAdd_SeqBAIJ_3;
2873a23d5eceSKris Buschelman       break;
2874a23d5eceSKris Buschelman     case 4:
2875a23d5eceSKris Buschelman       B->ops->mult    = MatMult_SeqBAIJ_4;
2876a23d5eceSKris Buschelman       B->ops->multadd = MatMultAdd_SeqBAIJ_4;
2877a23d5eceSKris Buschelman       break;
2878a23d5eceSKris Buschelman     case 5:
2879a23d5eceSKris Buschelman       B->ops->mult    = MatMult_SeqBAIJ_5;
2880a23d5eceSKris Buschelman       B->ops->multadd = MatMultAdd_SeqBAIJ_5;
2881a23d5eceSKris Buschelman       break;
2882a23d5eceSKris Buschelman     case 6:
2883a23d5eceSKris Buschelman       B->ops->mult    = MatMult_SeqBAIJ_6;
2884a23d5eceSKris Buschelman       B->ops->multadd = MatMultAdd_SeqBAIJ_6;
2885a23d5eceSKris Buschelman       break;
2886a23d5eceSKris Buschelman     case 7:
2887a23d5eceSKris Buschelman       B->ops->mult    = MatMult_SeqBAIJ_7;
2888a23d5eceSKris Buschelman       B->ops->multadd = MatMultAdd_SeqBAIJ_7;
2889a23d5eceSKris Buschelman       break;
289096e086a2SDaniel Kokron     case 9:
28916679dcc1SBarry Smith     {
28926679dcc1SBarry Smith       PetscInt version = 1;
28939566063dSJacob Faibussowitsch       PetscCall(PetscOptionsGetInt(NULL,((PetscObject)B)->prefix,"-mat_baij_mult_version",&version,NULL));
28946679dcc1SBarry Smith       switch (version) {
28955f70456aSHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX2__) && defined(__FMA__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
28966679dcc1SBarry Smith       case 1:
289796e086a2SDaniel Kokron         B->ops->mult    = MatMult_SeqBAIJ_9_AVX2;
289896e086a2SDaniel Kokron         B->ops->multadd = MatMultAdd_SeqBAIJ_9_AVX2;
28999566063dSJacob Faibussowitsch         PetscCall(PetscInfo((PetscObject)B,"Using AVX2 for MatMult for BAIJ for blocksize %" PetscInt_FMT "\n",bs));
29006679dcc1SBarry Smith         break;
29016679dcc1SBarry Smith #endif
29026679dcc1SBarry Smith       default:
290396e086a2SDaniel Kokron         B->ops->mult    = MatMult_SeqBAIJ_N;
290496e086a2SDaniel Kokron         B->ops->multadd = MatMultAdd_SeqBAIJ_N;
29059566063dSJacob Faibussowitsch         PetscCall(PetscInfo((PetscObject)B,"Using BLAS for MatMult for BAIJ for blocksize %" PetscInt_FMT "\n",bs));
290696e086a2SDaniel Kokron         break;
29076679dcc1SBarry Smith       }
29086679dcc1SBarry Smith       break;
29096679dcc1SBarry Smith     }
2910ebada01fSBarry Smith     case 11:
2911ebada01fSBarry Smith       B->ops->mult    = MatMult_SeqBAIJ_11;
2912ebada01fSBarry Smith       B->ops->multadd = MatMultAdd_SeqBAIJ_11;
2913ebada01fSBarry Smith       break;
29146679dcc1SBarry Smith     case 12:
29156679dcc1SBarry Smith     {
29166679dcc1SBarry Smith       PetscInt version = 1;
29179566063dSJacob Faibussowitsch       PetscCall(PetscOptionsGetInt(NULL,((PetscObject)B)->prefix,"-mat_baij_mult_version",&version,NULL));
29186679dcc1SBarry Smith       switch (version) {
29196679dcc1SBarry Smith       case 1:
29206679dcc1SBarry Smith         B->ops->mult    = MatMult_SeqBAIJ_12_ver1;
29216679dcc1SBarry Smith         B->ops->multadd = MatMultAdd_SeqBAIJ_12_ver1;
29229566063dSJacob Faibussowitsch         PetscCall(PetscInfo((PetscObject)B,"Using version %" PetscInt_FMT " of MatMult for BAIJ for blocksize %" PetscInt_FMT "\n",version,bs));
29238ab949d8SShri Abhyankar         break;
29246679dcc1SBarry Smith       case 2:
29256679dcc1SBarry Smith         B->ops->mult    = MatMult_SeqBAIJ_12_ver2;
29266679dcc1SBarry Smith         B->ops->multadd = MatMultAdd_SeqBAIJ_12_ver2;
29279566063dSJacob Faibussowitsch         PetscCall(PetscInfo((PetscObject)B,"Using version %" PetscInt_FMT " of MatMult for BAIJ for blocksize %" PetscInt_FMT "\n",version,bs));
29286679dcc1SBarry Smith         break;
29296679dcc1SBarry Smith #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX2__) && defined(__FMA__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES)
29306679dcc1SBarry Smith       case 3:
29316679dcc1SBarry Smith         B->ops->mult    = MatMult_SeqBAIJ_12_AVX2;
29326679dcc1SBarry Smith         B->ops->multadd = MatMultAdd_SeqBAIJ_12_ver1;
29339566063dSJacob Faibussowitsch         PetscCall(PetscInfo((PetscObject)B,"Using AVX2 for MatMult for BAIJ for blocksize %" PetscInt_FMT "\n",bs));
29346679dcc1SBarry Smith         break;
29356679dcc1SBarry Smith #endif
2936a23d5eceSKris Buschelman       default:
2937a23d5eceSKris Buschelman         B->ops->mult    = MatMult_SeqBAIJ_N;
2938a23d5eceSKris Buschelman         B->ops->multadd = MatMultAdd_SeqBAIJ_N;
29399566063dSJacob Faibussowitsch         PetscCall(PetscInfo((PetscObject)B,"Using BLAS for MatMult for BAIJ for blocksize %" PetscInt_FMT "\n",bs));
29406679dcc1SBarry Smith         break;
29416679dcc1SBarry Smith       }
29426679dcc1SBarry Smith       break;
29436679dcc1SBarry Smith     }
29446679dcc1SBarry Smith     case 15:
29456679dcc1SBarry Smith     {
29466679dcc1SBarry Smith       PetscInt version = 1;
29479566063dSJacob Faibussowitsch       PetscCall(PetscOptionsGetInt(NULL,((PetscObject)B)->prefix,"-mat_baij_mult_version",&version,NULL));
29486679dcc1SBarry Smith       switch (version) {
29496679dcc1SBarry Smith       case 1:
29506679dcc1SBarry Smith         B->ops->mult    = MatMult_SeqBAIJ_15_ver1;
29519566063dSJacob Faibussowitsch         PetscCall(PetscInfo((PetscObject)B,"Using version %" PetscInt_FMT " of MatMult for BAIJ for blocksize %" PetscInt_FMT "\n",version,bs));
29526679dcc1SBarry Smith         break;
29536679dcc1SBarry Smith       case 2:
29546679dcc1SBarry Smith         B->ops->mult    = MatMult_SeqBAIJ_15_ver2;
29559566063dSJacob Faibussowitsch         PetscCall(PetscInfo((PetscObject)B,"Using version %" PetscInt_FMT " of MatMult for BAIJ for blocksize %" PetscInt_FMT "\n",version,bs));
29566679dcc1SBarry Smith         break;
29576679dcc1SBarry Smith       case 3:
29586679dcc1SBarry Smith         B->ops->mult    = MatMult_SeqBAIJ_15_ver3;
29599566063dSJacob Faibussowitsch         PetscCall(PetscInfo((PetscObject)B,"Using version %" PetscInt_FMT " of MatMult for BAIJ for blocksize %" PetscInt_FMT "\n",version,bs));
29606679dcc1SBarry Smith         break;
29616679dcc1SBarry Smith       case 4:
29626679dcc1SBarry Smith         B->ops->mult    = MatMult_SeqBAIJ_15_ver4;
29639566063dSJacob Faibussowitsch         PetscCall(PetscInfo((PetscObject)B,"Using version %" PetscInt_FMT " of MatMult for BAIJ for blocksize %" PetscInt_FMT "\n",version,bs));
29646679dcc1SBarry Smith         break;
29656679dcc1SBarry Smith       default:
29666679dcc1SBarry Smith         B->ops->mult    = MatMult_SeqBAIJ_N;
29679566063dSJacob Faibussowitsch         PetscCall(PetscInfo((PetscObject)B,"Using BLAS for MatMult for BAIJ for blocksize %" PetscInt_FMT "\n",bs));
29686679dcc1SBarry Smith         break;
29696679dcc1SBarry Smith       }
29706679dcc1SBarry Smith       B->ops->multadd = MatMultAdd_SeqBAIJ_N;
29716679dcc1SBarry Smith       break;
29726679dcc1SBarry Smith     }
29736679dcc1SBarry Smith     default:
29746679dcc1SBarry Smith       B->ops->mult    = MatMult_SeqBAIJ_N;
29756679dcc1SBarry Smith       B->ops->multadd = MatMultAdd_SeqBAIJ_N;
29769566063dSJacob Faibussowitsch       PetscCall(PetscInfo((PetscObject)B,"Using BLAS for MatMult for BAIJ for blocksize %" PetscInt_FMT "\n",bs));
2977a23d5eceSKris Buschelman       break;
2978a23d5eceSKris Buschelman     }
2979a23d5eceSKris Buschelman   }
2980e48d15efSToby Isaac   B->ops->sor = MatSOR_SeqBAIJ;
2981a23d5eceSKris Buschelman   b->mbs = mbs;
2982a23d5eceSKris Buschelman   b->nbs = nbs;
2983ab93d7beSBarry Smith   if (!skipallocation) {
29842ee49352SLisandro Dalcin     if (!b->imax) {
29859566063dSJacob Faibussowitsch       PetscCall(PetscMalloc2(mbs,&b->imax,mbs,&b->ilen));
29869566063dSJacob Faibussowitsch       PetscCall(PetscLogObjectMemory((PetscObject)B,2*mbs*sizeof(PetscInt)));
298726fbe8dcSKarl Rupp 
29884fd072dbSBarry Smith       b->free_imax_ilen = PETSC_TRUE;
29892ee49352SLisandro Dalcin     }
2990ab93d7beSBarry Smith     /* b->ilen will count nonzeros in each block row so far. */
299126fbe8dcSKarl Rupp     for (i=0; i<mbs; i++) b->ilen[i] = 0;
2992a23d5eceSKris Buschelman     if (!nnz) {
2993a23d5eceSKris Buschelman       if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 5;
2994c62bd62aSJed Brown       else if (nz < 0) nz = 1;
29955d2a9ed1SStefano Zampini       nz = PetscMin(nz,nbs);
2996a23d5eceSKris Buschelman       for (i=0; i<mbs; i++) b->imax[i] = nz;
29979566063dSJacob Faibussowitsch       PetscCall(PetscIntMultError(nz,mbs,&nz));
2998a23d5eceSKris Buschelman     } else {
2999c73702f5SBarry Smith       PetscInt64 nz64 = 0;
3000c73702f5SBarry Smith       for (i=0; i<mbs; i++) {b->imax[i] = nnz[i]; nz64 += nnz[i];}
30019566063dSJacob Faibussowitsch       PetscCall(PetscIntCast(nz64,&nz));
3002a23d5eceSKris Buschelman     }
3003a23d5eceSKris Buschelman 
3004a23d5eceSKris Buschelman     /* allocate the matrix space */
30059566063dSJacob Faibussowitsch     PetscCall(MatSeqXAIJFreeAIJ(B,&b->a,&b->j,&b->i));
3006672ba085SHong Zhang     if (B->structure_only) {
30079566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(nz,&b->j));
30089566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(B->rmap->N+1,&b->i));
30099566063dSJacob Faibussowitsch       PetscCall(PetscLogObjectMemory((PetscObject)B,(B->rmap->N+1)*sizeof(PetscInt)+nz*sizeof(PetscInt)));
3010672ba085SHong Zhang     } else {
30116679dcc1SBarry Smith       PetscInt nzbs2 = 0;
30129566063dSJacob Faibussowitsch       PetscCall(PetscIntMultError(nz,bs2,&nzbs2));
30139566063dSJacob Faibussowitsch       PetscCall(PetscMalloc3(nzbs2,&b->a,nz,&b->j,B->rmap->N+1,&b->i));
30149566063dSJacob Faibussowitsch       PetscCall(PetscLogObjectMemory((PetscObject)B,(B->rmap->N+1)*sizeof(PetscInt)+nz*(bs2*sizeof(PetscScalar)+sizeof(PetscInt))));
30159566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(b->a,nz*bs2));
3016672ba085SHong Zhang     }
30179566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(b->j,nz));
301826fbe8dcSKarl Rupp 
3019672ba085SHong Zhang     if (B->structure_only) {
3020672ba085SHong Zhang       b->singlemalloc = PETSC_FALSE;
3021672ba085SHong Zhang       b->free_a       = PETSC_FALSE;
3022672ba085SHong Zhang     } else {
3023a23d5eceSKris Buschelman       b->singlemalloc = PETSC_TRUE;
3024672ba085SHong Zhang       b->free_a       = PETSC_TRUE;
3025672ba085SHong Zhang     }
3026672ba085SHong Zhang     b->free_ij = PETSC_TRUE;
3027672ba085SHong Zhang 
3028a23d5eceSKris Buschelman     b->i[0] = 0;
3029a23d5eceSKris Buschelman     for (i=1; i<mbs+1; i++) {
3030a23d5eceSKris Buschelman       b->i[i] = b->i[i-1] + b->imax[i-1];
3031a23d5eceSKris Buschelman     }
3032672ba085SHong Zhang 
3033e811da20SHong Zhang   } else {
3034e6b907acSBarry Smith     b->free_a  = PETSC_FALSE;
3035e6b907acSBarry Smith     b->free_ij = PETSC_FALSE;
3036ab93d7beSBarry Smith   }
3037a23d5eceSKris Buschelman 
3038a23d5eceSKris Buschelman   b->bs2              = bs2;
3039a23d5eceSKris Buschelman   b->mbs              = mbs;
3040a23d5eceSKris Buschelman   b->nz               = 0;
3041b32cb4a7SJed Brown   b->maxnz            = nz;
3042b32cb4a7SJed Brown   B->info.nz_unneeded = (PetscReal)b->maxnz*bs2;
3043cb7b82ddSBarry Smith   B->was_assembled    = PETSC_FALSE;
3044cb7b82ddSBarry Smith   B->assembled        = PETSC_FALSE;
30459566063dSJacob Faibussowitsch   if (realalloc) PetscCall(MatSetOption(B,MAT_NEW_NONZERO_ALLOCATION_ERR,PETSC_TRUE));
3046a23d5eceSKris Buschelman   PetscFunctionReturn(0);
3047a23d5eceSKris Buschelman }
3048a23d5eceSKris Buschelman 
3049cf12db73SBarry Smith PetscErrorCode MatSeqBAIJSetPreallocationCSR_SeqBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[])
3050725b52f3SLisandro Dalcin {
3051725b52f3SLisandro Dalcin   PetscInt       i,m,nz,nz_max=0,*nnz;
3052f4259b30SLisandro Dalcin   PetscScalar    *values=NULL;
3053d47bf9aaSJed Brown   PetscBool      roworiented = ((Mat_SeqBAIJ*)B->data)->roworiented;
3054725b52f3SLisandro Dalcin 
3055725b52f3SLisandro Dalcin   PetscFunctionBegin;
30565f80ce2aSJacob Faibussowitsch   PetscCheck(bs >= 1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %" PetscInt_FMT,bs);
30579566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(B->rmap,bs));
30589566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(B->cmap,bs));
30599566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
30609566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
30619566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetBlockSize(B->rmap,&bs));
3062d0f46423SBarry Smith   m    = B->rmap->n/bs;
3063725b52f3SLisandro Dalcin 
30645f80ce2aSJacob Faibussowitsch   PetscCheck(ii[0] == 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %" PetscInt_FMT,ii[0]);
30659566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m+1, &nnz));
3066725b52f3SLisandro Dalcin   for (i=0; i<m; i++) {
3067cf12db73SBarry Smith     nz = ii[i+1]- ii[i];
30685f80ce2aSJacob Faibussowitsch     PetscCheck(nz >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT,i,nz);
3069725b52f3SLisandro Dalcin     nz_max = PetscMax(nz_max, nz);
3070725b52f3SLisandro Dalcin     nnz[i] = nz;
3071725b52f3SLisandro Dalcin   }
30729566063dSJacob Faibussowitsch   PetscCall(MatSeqBAIJSetPreallocation(B,bs,0,nnz));
30739566063dSJacob Faibussowitsch   PetscCall(PetscFree(nnz));
3074725b52f3SLisandro Dalcin 
3075725b52f3SLisandro Dalcin   values = (PetscScalar*)V;
3076725b52f3SLisandro Dalcin   if (!values) {
30779566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(bs*bs*(nz_max+1),&values));
3078725b52f3SLisandro Dalcin   }
3079725b52f3SLisandro Dalcin   for (i=0; i<m; i++) {
3080cf12db73SBarry Smith     PetscInt          ncols  = ii[i+1] - ii[i];
3081cf12db73SBarry Smith     const PetscInt    *icols = jj + ii[i];
3082bb80cfbbSStefano Zampini     if (bs == 1 || !roworiented) {
3083cf12db73SBarry Smith       const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0);
30849566063dSJacob Faibussowitsch       PetscCall(MatSetValuesBlocked_SeqBAIJ(B,1,&i,ncols,icols,svals,INSERT_VALUES));
30853adadaf3SJed Brown     } else {
30863adadaf3SJed Brown       PetscInt j;
30873adadaf3SJed Brown       for (j=0; j<ncols; j++) {
30883adadaf3SJed Brown         const PetscScalar *svals = values + (V ? (bs*bs*(ii[i]+j)) : 0);
30899566063dSJacob Faibussowitsch         PetscCall(MatSetValuesBlocked_SeqBAIJ(B,1,&i,1,&icols[j],svals,INSERT_VALUES));
30903adadaf3SJed Brown       }
30913adadaf3SJed Brown     }
3092725b52f3SLisandro Dalcin   }
30939566063dSJacob Faibussowitsch   if (!V) PetscCall(PetscFree(values));
30949566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY));
30959566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY));
30969566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE));
3097725b52f3SLisandro Dalcin   PetscFunctionReturn(0);
3098725b52f3SLisandro Dalcin }
3099725b52f3SLisandro Dalcin 
3100cda14afcSprj- /*@C
3101cda14afcSprj-    MatSeqBAIJGetArray - gives access to the array where the data for a MATSEQBAIJ matrix is stored
3102cda14afcSprj- 
3103cda14afcSprj-    Not Collective
3104cda14afcSprj- 
3105cda14afcSprj-    Input Parameter:
3106cda14afcSprj- .  mat - a MATSEQBAIJ matrix
3107cda14afcSprj- 
3108cda14afcSprj-    Output Parameter:
3109cda14afcSprj- .   array - pointer to the data
3110cda14afcSprj- 
3111cda14afcSprj-    Level: intermediate
3112cda14afcSprj- 
3113cda14afcSprj- .seealso: MatSeqBAIJRestoreArray(), MatSeqAIJGetArray(), MatSeqAIJRestoreArray()
3114cda14afcSprj- @*/
3115cda14afcSprj- PetscErrorCode MatSeqBAIJGetArray(Mat A,PetscScalar **array)
3116cda14afcSprj- {
3117cda14afcSprj-   PetscFunctionBegin;
3118*cac4c232SBarry Smith   PetscUseMethod(A,"MatSeqBAIJGetArray_C",(Mat,PetscScalar**),(A,array));
3119cda14afcSprj-   PetscFunctionReturn(0);
3120cda14afcSprj- }
3121cda14afcSprj- 
3122cda14afcSprj- /*@C
3123cda14afcSprj-    MatSeqBAIJRestoreArray - returns access to the array where the data for a MATSEQBAIJ matrix is stored obtained by MatSeqBAIJGetArray()
3124cda14afcSprj- 
3125cda14afcSprj-    Not Collective
3126cda14afcSprj- 
3127cda14afcSprj-    Input Parameters:
3128cda14afcSprj- +  mat - a MATSEQBAIJ matrix
3129cda14afcSprj- -  array - pointer to the data
3130cda14afcSprj- 
3131cda14afcSprj-    Level: intermediate
3132cda14afcSprj- 
3133cda14afcSprj- .seealso: MatSeqBAIJGetArray(), MatSeqAIJGetArray(), MatSeqAIJRestoreArray()
3134cda14afcSprj- @*/
3135cda14afcSprj- PetscErrorCode MatSeqBAIJRestoreArray(Mat A,PetscScalar **array)
3136cda14afcSprj- {
3137cda14afcSprj-   PetscFunctionBegin;
3138*cac4c232SBarry Smith   PetscUseMethod(A,"MatSeqBAIJRestoreArray_C",(Mat,PetscScalar**),(A,array));
3139cda14afcSprj-   PetscFunctionReturn(0);
3140cda14afcSprj- }
3141cda14afcSprj- 
31420bad9183SKris Buschelman /*MC
3143fafad747SKris Buschelman    MATSEQBAIJ - MATSEQBAIJ = "seqbaij" - A matrix type to be used for sequential block sparse matrices, based on
31440bad9183SKris Buschelman    block sparse compressed row format.
31450bad9183SKris Buschelman 
31460bad9183SKris Buschelman    Options Database Keys:
31476679dcc1SBarry Smith + -mat_type seqbaij - sets the matrix type to "seqbaij" during a call to MatSetFromOptions()
31486679dcc1SBarry Smith - -mat_baij_mult_version version - indicate the version of the matrix-vector product to use (0 often indicates using BLAS)
31490bad9183SKris Buschelman 
31500bad9183SKris Buschelman    Level: beginner
31510cd7f59aSBarry Smith 
31520cd7f59aSBarry Smith    Notes:
31530cd7f59aSBarry Smith     MatSetOptions(,MAT_STRUCTURE_ONLY,PETSC_TRUE) may be called for this matrix type. In this no
31540cd7f59aSBarry Smith     space is allocated for the nonzero entries and any entries passed with MatSetValues() are ignored
31550bad9183SKris Buschelman 
31566679dcc1SBarry Smith    Run with -info to see what version of the matrix-vector product is being used
31576679dcc1SBarry Smith 
3158f0c06035SSatish Balay .seealso: MatCreateSeqBAIJ()
31590bad9183SKris Buschelman M*/
31600bad9183SKris Buschelman 
3161cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqBSTRM(Mat, MatType,MatReuse,Mat*);
3162b24902e0SBarry Smith 
31638cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_SeqBAIJ(Mat B)
31642593348eSBarry Smith {
3165c1ac3661SBarry Smith   PetscMPIInt    size;
3166b6490206SBarry Smith   Mat_SeqBAIJ    *b;
31673b2fbd54SBarry Smith 
31683a40ed3dSBarry Smith   PetscFunctionBegin;
31699566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B),&size));
31705f80ce2aSJacob Faibussowitsch   PetscCheck(size == 1,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Comm must be of size 1");
3171b6490206SBarry Smith 
31729566063dSJacob Faibussowitsch   PetscCall(PetscNewLog(B,&b));
3173b0a32e0cSBarry Smith   B->data = (void*)b;
31749566063dSJacob Faibussowitsch   PetscCall(PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps)));
317526fbe8dcSKarl Rupp 
3176f4259b30SLisandro Dalcin   b->row          = NULL;
3177f4259b30SLisandro Dalcin   b->col          = NULL;
3178f4259b30SLisandro Dalcin   b->icol         = NULL;
31792593348eSBarry Smith   b->reallocs     = 0;
3180f4259b30SLisandro Dalcin   b->saved_values = NULL;
31812593348eSBarry Smith 
3182c4992f7dSBarry Smith   b->roworiented        = PETSC_TRUE;
31832593348eSBarry Smith   b->nonew              = 0;
3184f4259b30SLisandro Dalcin   b->diag               = NULL;
3185f4259b30SLisandro Dalcin   B->spptr              = NULL;
3186b32cb4a7SJed Brown   B->info.nz_unneeded   = (PetscReal)b->maxnz*b->bs2;
3187a9817697SBarry Smith   b->keepnonzeropattern = PETSC_FALSE;
31884e220ebcSLois Curfman McInnes 
31899566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatSeqBAIJGetArray_C",MatSeqBAIJGetArray_SeqBAIJ));
31909566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatSeqBAIJRestoreArray_C",MatSeqBAIJRestoreArray_SeqBAIJ));
31919566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_SeqBAIJ));
31929566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_SeqBAIJ));
31939566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatSeqBAIJSetColumnIndices_C",MatSeqBAIJSetColumnIndices_SeqBAIJ));
31949566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqbaij_seqaij_C",MatConvert_SeqBAIJ_SeqAIJ));
31959566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqbaij_seqsbaij_C",MatConvert_SeqBAIJ_SeqSBAIJ));
31969566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatSeqBAIJSetPreallocation_C",MatSeqBAIJSetPreallocation_SeqBAIJ));
31979566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatSeqBAIJSetPreallocationCSR_C",MatSeqBAIJSetPreallocationCSR_SeqBAIJ));
31989566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatIsTranspose_C",MatIsTranspose_SeqBAIJ));
31997ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE)
32009566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqbaij_hypre_C",MatConvert_AIJ_HYPRE));
32017ea3e4caSstefano_zampini #endif
32029566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqbaij_is_C",MatConvert_XAIJ_IS));
32039566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)B,MATSEQBAIJ));
32043a40ed3dSBarry Smith   PetscFunctionReturn(0);
32052593348eSBarry Smith }
32062593348eSBarry Smith 
3207ace3abfcSBarry Smith PetscErrorCode MatDuplicateNoCreate_SeqBAIJ(Mat C,Mat A,MatDuplicateOption cpvalues,PetscBool mallocmatspace)
32082593348eSBarry Smith {
3209b24902e0SBarry Smith   Mat_SeqBAIJ    *c = (Mat_SeqBAIJ*)C->data,*a = (Mat_SeqBAIJ*)A->data;
3210a96a251dSBarry Smith   PetscInt       i,mbs = a->mbs,nz = a->nz,bs2 = a->bs2;
3211de6a44a3SBarry Smith 
32123a40ed3dSBarry Smith   PetscFunctionBegin;
32135f80ce2aSJacob Faibussowitsch   PetscCheck(a->i[mbs] == nz,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Corrupt matrix");
32142593348eSBarry Smith 
32154fd072dbSBarry Smith   if (cpvalues == MAT_SHARE_NONZERO_PATTERN) {
32164fd072dbSBarry Smith     c->imax           = a->imax;
32174fd072dbSBarry Smith     c->ilen           = a->ilen;
32184fd072dbSBarry Smith     c->free_imax_ilen = PETSC_FALSE;
32194fd072dbSBarry Smith   } else {
32209566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(mbs,&c->imax,mbs,&c->ilen));
32219566063dSJacob Faibussowitsch     PetscCall(PetscLogObjectMemory((PetscObject)C,2*mbs*sizeof(PetscInt)));
3222b6490206SBarry Smith     for (i=0; i<mbs; i++) {
32232593348eSBarry Smith       c->imax[i] = a->imax[i];
32242593348eSBarry Smith       c->ilen[i] = a->ilen[i];
32252593348eSBarry Smith     }
32264fd072dbSBarry Smith     c->free_imax_ilen = PETSC_TRUE;
32274fd072dbSBarry Smith   }
32282593348eSBarry Smith 
32292593348eSBarry Smith   /* allocate the matrix space */
323016a2bf60SHong Zhang   if (mallocmatspace) {
32314fd072dbSBarry Smith     if (cpvalues == MAT_SHARE_NONZERO_PATTERN) {
32329566063dSJacob Faibussowitsch       PetscCall(PetscCalloc1(bs2*nz,&c->a));
32339566063dSJacob Faibussowitsch       PetscCall(PetscLogObjectMemory((PetscObject)C,a->i[mbs]*bs2*sizeof(PetscScalar)));
323426fbe8dcSKarl Rupp 
32354fd072dbSBarry Smith       c->i            = a->i;
32364fd072dbSBarry Smith       c->j            = a->j;
3237379be0ddSLisandro Dalcin       c->singlemalloc = PETSC_FALSE;
3238379be0ddSLisandro Dalcin       c->free_a       = PETSC_TRUE;
3239379be0ddSLisandro Dalcin       c->free_ij      = PETSC_FALSE;
32404fd072dbSBarry Smith       c->parent       = A;
32411e40a84eSLisandro Dalcin       C->preallocated = PETSC_TRUE;
32421e40a84eSLisandro Dalcin       C->assembled    = PETSC_TRUE;
324326fbe8dcSKarl Rupp 
32449566063dSJacob Faibussowitsch       PetscCall(PetscObjectReference((PetscObject)A));
32459566063dSJacob Faibussowitsch       PetscCall(MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE));
32469566063dSJacob Faibussowitsch       PetscCall(MatSetOption(C,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE));
32474fd072dbSBarry Smith     } else {
32489566063dSJacob Faibussowitsch       PetscCall(PetscMalloc3(bs2*nz,&c->a,nz,&c->j,mbs+1,&c->i));
32499566063dSJacob Faibussowitsch       PetscCall(PetscLogObjectMemory((PetscObject)C,a->i[mbs]*(bs2*sizeof(PetscScalar)+sizeof(PetscInt))+(mbs+1)*sizeof(PetscInt)));
325026fbe8dcSKarl Rupp 
3251c4992f7dSBarry Smith       c->singlemalloc = PETSC_TRUE;
3252379be0ddSLisandro Dalcin       c->free_a       = PETSC_TRUE;
32534fd072dbSBarry Smith       c->free_ij      = PETSC_TRUE;
325426fbe8dcSKarl Rupp 
32559566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(c->i,a->i,mbs+1));
3256b6490206SBarry Smith       if (mbs > 0) {
32579566063dSJacob Faibussowitsch         PetscCall(PetscArraycpy(c->j,a->j,nz));
32582e8a6d31SBarry Smith         if (cpvalues == MAT_COPY_VALUES) {
32599566063dSJacob Faibussowitsch           PetscCall(PetscArraycpy(c->a,a->a,bs2*nz));
32602e8a6d31SBarry Smith         } else {
32619566063dSJacob Faibussowitsch           PetscCall(PetscArrayzero(c->a,bs2*nz));
32622593348eSBarry Smith         }
32632593348eSBarry Smith       }
32641e40a84eSLisandro Dalcin       C->preallocated = PETSC_TRUE;
32651e40a84eSLisandro Dalcin       C->assembled    = PETSC_TRUE;
326616a2bf60SHong Zhang     }
32674fd072dbSBarry Smith   }
326816a2bf60SHong Zhang 
32692593348eSBarry Smith   c->roworiented = a->roworiented;
32702593348eSBarry Smith   c->nonew       = a->nonew;
327126fbe8dcSKarl Rupp 
32729566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(A->rmap,&C->rmap));
32739566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(A->cmap,&C->cmap));
327426fbe8dcSKarl Rupp 
32755c9eb25fSBarry Smith   c->bs2         = a->bs2;
32765c9eb25fSBarry Smith   c->mbs         = a->mbs;
32775c9eb25fSBarry Smith   c->nbs         = a->nbs;
32782593348eSBarry Smith 
32792593348eSBarry Smith   if (a->diag) {
32804fd072dbSBarry Smith     if (cpvalues == MAT_SHARE_NONZERO_PATTERN) {
32814fd072dbSBarry Smith       c->diag      = a->diag;
32824fd072dbSBarry Smith       c->free_diag = PETSC_FALSE;
32834fd072dbSBarry Smith     } else {
32849566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(mbs+1,&c->diag));
32859566063dSJacob Faibussowitsch       PetscCall(PetscLogObjectMemory((PetscObject)C,(mbs+1)*sizeof(PetscInt)));
328626fbe8dcSKarl Rupp       for (i=0; i<mbs; i++) c->diag[i] = a->diag[i];
32874fd072dbSBarry Smith       c->free_diag = PETSC_TRUE;
32884fd072dbSBarry Smith     }
3289f4259b30SLisandro Dalcin   } else c->diag = NULL;
329026fbe8dcSKarl Rupp 
32912593348eSBarry Smith   c->nz         = a->nz;
3292f2cbd3d5SJed Brown   c->maxnz      = a->nz;         /* Since we allocate exactly the right amount */
3293f361c04dSBarry Smith   c->solve_work = NULL;
3294f361c04dSBarry Smith   c->mult_work  = NULL;
3295f361c04dSBarry Smith   c->sor_workt  = NULL;
3296f361c04dSBarry Smith   c->sor_work   = NULL;
329788e51ccdSHong Zhang 
329888e51ccdSHong Zhang   c->compressedrow.use   = a->compressedrow.use;
329988e51ccdSHong Zhang   c->compressedrow.nrows = a->compressedrow.nrows;
3300cd6b891eSBarry Smith   if (a->compressedrow.use) {
330188e51ccdSHong Zhang     i    = a->compressedrow.nrows;
33029566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(i+1,&c->compressedrow.i,i+1,&c->compressedrow.rindex));
33039566063dSJacob Faibussowitsch     PetscCall(PetscLogObjectMemory((PetscObject)C,(2*i+1)*sizeof(PetscInt)));
33049566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(c->compressedrow.i,a->compressedrow.i,i+1));
33059566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(c->compressedrow.rindex,a->compressedrow.rindex,i));
330688e51ccdSHong Zhang   } else {
330788e51ccdSHong Zhang     c->compressedrow.use    = PETSC_FALSE;
33080298fd71SBarry Smith     c->compressedrow.i      = NULL;
33090298fd71SBarry Smith     c->compressedrow.rindex = NULL;
331088e51ccdSHong Zhang   }
3311e56f5c9eSBarry Smith   C->nonzerostate = A->nonzerostate;
331226fbe8dcSKarl Rupp 
33139566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListDuplicate(((PetscObject)A)->qlist,&((PetscObject)C)->qlist));
33143a40ed3dSBarry Smith   PetscFunctionReturn(0);
33152593348eSBarry Smith }
33162593348eSBarry Smith 
3317b24902e0SBarry Smith PetscErrorCode MatDuplicate_SeqBAIJ(Mat A,MatDuplicateOption cpvalues,Mat *B)
3318b24902e0SBarry Smith {
3319b24902e0SBarry Smith   PetscFunctionBegin;
33209566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)A),B));
33219566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*B,A->rmap->N,A->cmap->n,A->rmap->N,A->cmap->n));
33229566063dSJacob Faibussowitsch   PetscCall(MatSetType(*B,MATSEQBAIJ));
33239566063dSJacob Faibussowitsch   PetscCall(MatDuplicateNoCreate_SeqBAIJ(*B,A,cpvalues,PETSC_TRUE));
3324b24902e0SBarry Smith   PetscFunctionReturn(0);
3325b24902e0SBarry Smith }
3326b24902e0SBarry Smith 
3327618cc2edSLisandro Dalcin /* Used for both SeqBAIJ and SeqSBAIJ matrices */
3328b51a4376SLisandro Dalcin PetscErrorCode MatLoad_SeqBAIJ_Binary(Mat mat,PetscViewer viewer)
3329f501eaabSShri Abhyankar {
3330b51a4376SLisandro Dalcin   PetscInt       header[4],M,N,nz,bs,m,n,mbs,nbs,rows,cols,sum,i,j,k;
3331b51a4376SLisandro Dalcin   PetscInt       *rowidxs,*colidxs;
3332b51a4376SLisandro Dalcin   PetscScalar    *matvals;
3333b51a4376SLisandro Dalcin 
3334b51a4376SLisandro Dalcin   PetscFunctionBegin;
33359566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
3336b51a4376SLisandro Dalcin 
3337b51a4376SLisandro Dalcin   /* read matrix header */
33389566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryRead(viewer,header,4,NULL,PETSC_INT));
33395f80ce2aSJacob Faibussowitsch   PetscCheck(header[0] == MAT_FILE_CLASSID,PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Not a matrix object in file");
3340b51a4376SLisandro Dalcin   M = header[1]; N = header[2]; nz = header[3];
33415f80ce2aSJacob Faibussowitsch   PetscCheck(M >= 0,PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Matrix row size (%" PetscInt_FMT ") in file is negative",M);
33425f80ce2aSJacob Faibussowitsch   PetscCheck(N >= 0,PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Matrix column size (%" PetscInt_FMT ") in file is negative",N);
33435f80ce2aSJacob Faibussowitsch   PetscCheck(nz >= 0,PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format on disk, cannot load as SeqBAIJ");
3344b51a4376SLisandro Dalcin 
3345b51a4376SLisandro Dalcin   /* set block sizes from the viewer's .info file */
33469566063dSJacob Faibussowitsch   PetscCall(MatLoad_Binary_BlockSizes(mat,viewer));
3347b51a4376SLisandro Dalcin   /* set local and global sizes if not set already */
3348b51a4376SLisandro Dalcin   if (mat->rmap->n < 0) mat->rmap->n = M;
3349b51a4376SLisandro Dalcin   if (mat->cmap->n < 0) mat->cmap->n = N;
3350b51a4376SLisandro Dalcin   if (mat->rmap->N < 0) mat->rmap->N = M;
3351b51a4376SLisandro Dalcin   if (mat->cmap->N < 0) mat->cmap->N = N;
33529566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->rmap));
33539566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->cmap));
3354b51a4376SLisandro Dalcin 
3355b51a4376SLisandro Dalcin   /* check if the matrix sizes are correct */
33569566063dSJacob Faibussowitsch   PetscCall(MatGetSize(mat,&rows,&cols));
33575f80ce2aSJacob Faibussowitsch   PetscCheck(M == rows && N == cols,PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")",M,N,rows,cols);
33589566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSize(mat,&bs));
33599566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat,&m,&n));
3360b51a4376SLisandro Dalcin   mbs = m/bs; nbs = n/bs;
3361b51a4376SLisandro Dalcin 
3362b51a4376SLisandro Dalcin   /* read in row lengths, column indices and nonzero values */
33639566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m+1,&rowidxs));
33649566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryRead(viewer,rowidxs+1,m,NULL,PETSC_INT));
3365b51a4376SLisandro Dalcin   rowidxs[0] = 0; for (i=0; i<m; i++) rowidxs[i+1] += rowidxs[i];
3366b51a4376SLisandro Dalcin   sum = rowidxs[m];
33675f80ce2aSJacob Faibussowitsch   PetscCheck(sum == nz,PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT,nz,sum);
3368b51a4376SLisandro Dalcin 
3369b51a4376SLisandro Dalcin   /* read in column indices and nonzero values */
33709566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(rowidxs[m],&colidxs,nz,&matvals));
33719566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryRead(viewer,colidxs,rowidxs[m],NULL,PETSC_INT));
33729566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryRead(viewer,matvals,rowidxs[m],NULL,PETSC_SCALAR));
3373b51a4376SLisandro Dalcin 
3374b51a4376SLisandro Dalcin   { /* preallocate matrix storage */
3375b51a4376SLisandro Dalcin     PetscBT   bt; /* helper bit set to count nonzeros */
3376b51a4376SLisandro Dalcin     PetscInt  *nnz;
3377618cc2edSLisandro Dalcin     PetscBool sbaij;
3378b51a4376SLisandro Dalcin 
33799566063dSJacob Faibussowitsch     PetscCall(PetscBTCreate(nbs,&bt));
33809566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(mbs,&nnz));
33819566063dSJacob Faibussowitsch     PetscCall(PetscObjectTypeCompare((PetscObject)mat,MATSEQSBAIJ,&sbaij));
3382b51a4376SLisandro Dalcin     for (i=0; i<mbs; i++) {
33839566063dSJacob Faibussowitsch       PetscCall(PetscBTMemzero(nbs,bt));
3384618cc2edSLisandro Dalcin       for (k=0; k<bs; k++) {
3385618cc2edSLisandro Dalcin         PetscInt row = bs*i + k;
3386618cc2edSLisandro Dalcin         for (j=rowidxs[row]; j<rowidxs[row+1]; j++) {
3387618cc2edSLisandro Dalcin           PetscInt col = colidxs[j];
3388618cc2edSLisandro Dalcin           if (!sbaij || col >= row)
3389618cc2edSLisandro Dalcin             if (!PetscBTLookupSet(bt,col/bs)) nnz[i]++;
3390618cc2edSLisandro Dalcin         }
3391618cc2edSLisandro Dalcin       }
3392b51a4376SLisandro Dalcin     }
33939566063dSJacob Faibussowitsch     PetscCall(PetscBTDestroy(&bt));
33949566063dSJacob Faibussowitsch     PetscCall(MatSeqBAIJSetPreallocation(mat,bs,0,nnz));
33959566063dSJacob Faibussowitsch     PetscCall(MatSeqSBAIJSetPreallocation(mat,bs,0,nnz));
33969566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz));
3397b51a4376SLisandro Dalcin   }
3398b51a4376SLisandro Dalcin 
3399b51a4376SLisandro Dalcin   /* store matrix values */
3400b51a4376SLisandro Dalcin   for (i=0; i<m; i++) {
3401b51a4376SLisandro Dalcin     PetscInt row = i, s = rowidxs[i], e = rowidxs[i+1];
34029566063dSJacob Faibussowitsch     PetscCall((*mat->ops->setvalues)(mat,1,&row,e-s,colidxs+s,matvals+s,INSERT_VALUES));
3403b51a4376SLisandro Dalcin   }
3404b51a4376SLisandro Dalcin 
34059566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowidxs));
34069566063dSJacob Faibussowitsch   PetscCall(PetscFree2(colidxs,matvals));
34079566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mat,MAT_FINAL_ASSEMBLY));
34089566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mat,MAT_FINAL_ASSEMBLY));
3409b51a4376SLisandro Dalcin   PetscFunctionReturn(0);
3410b51a4376SLisandro Dalcin }
3411b51a4376SLisandro Dalcin 
3412b51a4376SLisandro Dalcin PetscErrorCode MatLoad_SeqBAIJ(Mat mat,PetscViewer viewer)
3413b51a4376SLisandro Dalcin {
34147f489da9SVaclav Hapla   PetscBool isbinary;
3415f501eaabSShri Abhyankar 
3416f501eaabSShri Abhyankar   PetscFunctionBegin;
34179566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary));
34185f80ce2aSJacob Faibussowitsch   PetscCheck(isbinary,PetscObjectComm((PetscObject)viewer),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)mat)->type_name);
34199566063dSJacob Faibussowitsch   PetscCall(MatLoad_SeqBAIJ_Binary(mat,viewer));
3420f501eaabSShri Abhyankar   PetscFunctionReturn(0);
3421f501eaabSShri Abhyankar }
3422f501eaabSShri Abhyankar 
3423273d9f13SBarry Smith /*@C
3424273d9f13SBarry Smith    MatCreateSeqBAIJ - Creates a sparse matrix in block AIJ (block
3425273d9f13SBarry Smith    compressed row) format.  For good matrix assembly performance the
3426273d9f13SBarry Smith    user should preallocate the matrix storage by setting the parameter nz
3427273d9f13SBarry Smith    (or the array nnz).  By setting these parameters accurately, performance
3428273d9f13SBarry Smith    during matrix assembly can be increased by more than a factor of 50.
34292593348eSBarry Smith 
3430d083f849SBarry Smith    Collective
3431273d9f13SBarry Smith 
3432273d9f13SBarry Smith    Input Parameters:
3433273d9f13SBarry Smith +  comm - MPI communicator, set to PETSC_COMM_SELF
3434bb7ae925SBarry Smith .  bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
3435bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
3436273d9f13SBarry Smith .  m - number of rows
3437273d9f13SBarry Smith .  n - number of columns
343835d8aa7fSBarry Smith .  nz - number of nonzero blocks  per block row (same for all rows)
343935d8aa7fSBarry Smith -  nnz - array containing the number of nonzero blocks in the various block rows
34400298fd71SBarry Smith          (possibly different for each block row) or NULL
3441273d9f13SBarry Smith 
3442273d9f13SBarry Smith    Output Parameter:
3443273d9f13SBarry Smith .  A - the matrix
3444273d9f13SBarry Smith 
3445175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
3446f6f02116SRichard Tran Mills    MatXXXXSetPreallocation() paradigm instead of this routine directly.
3447175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
3448175b88e8SBarry Smith 
3449273d9f13SBarry Smith    Options Database Keys:
3450a2b725a8SWilliam Gropp +   -mat_no_unroll - uses code that does not unroll the loops in the
3451273d9f13SBarry Smith                      block calculations (much slower)
3452a2b725a8SWilliam Gropp -    -mat_block_size - size of the blocks to use
3453273d9f13SBarry Smith 
3454273d9f13SBarry Smith    Level: intermediate
3455273d9f13SBarry Smith 
3456273d9f13SBarry Smith    Notes:
3457d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
3458d1be2dadSMatthew Knepley 
345949a6f317SBarry Smith    If the nnz parameter is given then the nz parameter is ignored
346049a6f317SBarry Smith 
346135d8aa7fSBarry Smith    A nonzero block is any block that as 1 or more nonzeros in it
346235d8aa7fSBarry Smith 
3463273d9f13SBarry Smith    The block AIJ format is fully compatible with standard Fortran 77
3464273d9f13SBarry Smith    storage.  That is, the stored row and column indices can begin at
3465273d9f13SBarry Smith    either one (as in Fortran) or zero.  See the users' manual for details.
3466273d9f13SBarry Smith 
3467273d9f13SBarry Smith    Specify the preallocated storage with either nz or nnz (not both).
34680298fd71SBarry Smith    Set nz=PETSC_DEFAULT and nnz=NULL for PETSc to control dynamic memory
3469a7f22e61SSatish Balay    allocation.  See Users-Manual: ch_mat for details.
3470273d9f13SBarry Smith    matrices.
3471273d9f13SBarry Smith 
347269b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatCreateBAIJ()
3473273d9f13SBarry Smith @*/
34747087cfbeSBarry Smith PetscErrorCode  MatCreateSeqBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt nz,const PetscInt nnz[],Mat *A)
3475273d9f13SBarry Smith {
3476273d9f13SBarry Smith   PetscFunctionBegin;
34779566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm,A));
34789566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*A,m,n,m,n));
34799566063dSJacob Faibussowitsch   PetscCall(MatSetType(*A,MATSEQBAIJ));
34809566063dSJacob Faibussowitsch   PetscCall(MatSeqBAIJSetPreallocation(*A,bs,nz,(PetscInt*)nnz));
3481273d9f13SBarry Smith   PetscFunctionReturn(0);
3482273d9f13SBarry Smith }
3483273d9f13SBarry Smith 
3484273d9f13SBarry Smith /*@C
3485273d9f13SBarry Smith    MatSeqBAIJSetPreallocation - Sets the block size and expected nonzeros
3486273d9f13SBarry Smith    per row in the matrix. For good matrix assembly performance the
3487273d9f13SBarry Smith    user should preallocate the matrix storage by setting the parameter nz
3488273d9f13SBarry Smith    (or the array nnz).  By setting these parameters accurately, performance
3489273d9f13SBarry Smith    during matrix assembly can be increased by more than a factor of 50.
3490273d9f13SBarry Smith 
3491d083f849SBarry Smith    Collective
3492273d9f13SBarry Smith 
3493273d9f13SBarry Smith    Input Parameters:
34941c4f3114SJed Brown +  B - the matrix
3495bb7ae925SBarry Smith .  bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
3496bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
3497273d9f13SBarry Smith .  nz - number of block nonzeros per block row (same for all rows)
3498273d9f13SBarry Smith -  nnz - array containing the number of block nonzeros in the various block rows
34990298fd71SBarry Smith          (possibly different for each block row) or NULL
3500273d9f13SBarry Smith 
3501273d9f13SBarry Smith    Options Database Keys:
3502a2b725a8SWilliam Gropp +   -mat_no_unroll - uses code that does not unroll the loops in the
3503273d9f13SBarry Smith                      block calculations (much slower)
3504a2b725a8SWilliam Gropp -   -mat_block_size - size of the blocks to use
3505273d9f13SBarry Smith 
3506273d9f13SBarry Smith    Level: intermediate
3507273d9f13SBarry Smith 
3508273d9f13SBarry Smith    Notes:
350949a6f317SBarry Smith    If the nnz parameter is given then the nz parameter is ignored
351049a6f317SBarry Smith 
3511aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
3512aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
3513aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
3514aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
3515aa95bbe8SBarry Smith 
3516273d9f13SBarry Smith    The block AIJ format is fully compatible with standard Fortran 77
3517273d9f13SBarry Smith    storage.  That is, the stored row and column indices can begin at
3518273d9f13SBarry Smith    either one (as in Fortran) or zero.  See the users' manual for details.
3519273d9f13SBarry Smith 
3520273d9f13SBarry Smith    Specify the preallocated storage with either nz or nnz (not both).
35210298fd71SBarry Smith    Set nz=PETSC_DEFAULT and nnz=NULL for PETSc to control dynamic memory
3522a7f22e61SSatish Balay    allocation.  See Users-Manual: ch_mat for details.
3523273d9f13SBarry Smith 
352469b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatCreateBAIJ(), MatGetInfo()
3525273d9f13SBarry Smith @*/
35267087cfbeSBarry Smith PetscErrorCode  MatSeqBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt nz,const PetscInt nnz[])
3527273d9f13SBarry Smith {
3528273d9f13SBarry Smith   PetscFunctionBegin;
35296ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
35306ba663aaSJed Brown   PetscValidType(B,1);
35316ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
3532*cac4c232SBarry Smith   PetscTryMethod(B,"MatSeqBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[]),(B,bs,nz,nnz));
3533273d9f13SBarry Smith   PetscFunctionReturn(0);
3534273d9f13SBarry Smith }
3535a1d92eedSBarry Smith 
3536725b52f3SLisandro Dalcin /*@C
3537664954b6SBarry Smith    MatSeqBAIJSetPreallocationCSR - Creates a sparse parallel matrix in BAIJ format using the given nonzero structure and (optional) numerical values
3538725b52f3SLisandro Dalcin 
3539d083f849SBarry Smith    Collective
3540725b52f3SLisandro Dalcin 
3541725b52f3SLisandro Dalcin    Input Parameters:
35421c4f3114SJed Brown +  B - the matrix
3543725b52f3SLisandro Dalcin .  i - the indices into j for the start of each local row (starts with zero)
3544725b52f3SLisandro Dalcin .  j - the column indices for each local row (starts with zero) these must be sorted for each row
3545725b52f3SLisandro Dalcin -  v - optional values in the matrix
3546725b52f3SLisandro Dalcin 
3547664954b6SBarry Smith    Level: advanced
3548725b52f3SLisandro Dalcin 
35493adadaf3SJed Brown    Notes:
35503adadaf3SJed Brown    The order of the entries in values is specified by the MatOption MAT_ROW_ORIENTED.  For example, C programs
35513adadaf3SJed Brown    may want to use the default MAT_ROW_ORIENTED=PETSC_TRUE and use an array v[nnz][bs][bs] where the second index is
35523adadaf3SJed Brown    over rows within a block and the last index is over columns within a block row.  Fortran programs will likely set
35533adadaf3SJed Brown    MAT_ROW_ORIENTED=PETSC_FALSE and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a
35543adadaf3SJed Brown    block column and the second index is over columns within a block.
35553adadaf3SJed Brown 
3556664954b6SBarry Smith    Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries and usually the numerical values as well
3557664954b6SBarry Smith 
3558725b52f3SLisandro Dalcin .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatSeqBAIJSetPreallocation(), MATSEQBAIJ
3559725b52f3SLisandro Dalcin @*/
35607087cfbeSBarry Smith PetscErrorCode  MatSeqBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
3561725b52f3SLisandro Dalcin {
3562725b52f3SLisandro Dalcin   PetscFunctionBegin;
35636ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
35646ba663aaSJed Brown   PetscValidType(B,1);
35656ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
3566*cac4c232SBarry Smith   PetscTryMethod(B,"MatSeqBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));
3567725b52f3SLisandro Dalcin   PetscFunctionReturn(0);
3568725b52f3SLisandro Dalcin }
3569725b52f3SLisandro Dalcin 
3570c75a6043SHong Zhang /*@
3571dfb205c3SBarry Smith      MatCreateSeqBAIJWithArrays - Creates an sequential BAIJ matrix using matrix elements provided by the user.
3572c75a6043SHong Zhang 
3573d083f849SBarry Smith      Collective
3574c75a6043SHong Zhang 
3575c75a6043SHong Zhang    Input Parameters:
3576c75a6043SHong Zhang +  comm - must be an MPI communicator of size 1
3577c75a6043SHong Zhang .  bs - size of block
3578c75a6043SHong Zhang .  m - number of rows
3579c75a6043SHong Zhang .  n - number of columns
3580483a2f95SBarry Smith .  i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of elements in that row block row of the matrix
3581c75a6043SHong Zhang .  j - column indices
3582c75a6043SHong Zhang -  a - matrix values
3583c75a6043SHong Zhang 
3584c75a6043SHong Zhang    Output Parameter:
3585c75a6043SHong Zhang .  mat - the matrix
3586c75a6043SHong Zhang 
3587dfb205c3SBarry Smith    Level: advanced
3588c75a6043SHong Zhang 
3589c75a6043SHong Zhang    Notes:
3590c75a6043SHong Zhang        The i, j, and a arrays are not copied by this routine, the user must free these arrays
3591c75a6043SHong Zhang     once the matrix is destroyed
3592c75a6043SHong Zhang 
3593c75a6043SHong Zhang        You cannot set new nonzero locations into this matrix, that will generate an error.
3594c75a6043SHong Zhang 
3595c75a6043SHong Zhang        The i and j indices are 0 based
3596c75a6043SHong Zhang 
3597dfb205c3SBarry Smith        When block size is greater than 1 the matrix values must be stored using the BAIJ storage format (see the BAIJ code to determine this).
3598dfb205c3SBarry Smith 
35993adadaf3SJed Brown       The order of the entries in values is the same as the block compressed sparse row storage format; that is, it is
36003adadaf3SJed Brown       the same as a three dimensional array in Fortran values(bs,bs,nnz) that contains the first column of the first
36013adadaf3SJed Brown       block, followed by the second column of the first block etc etc.  That is, the blocks are contiguous in memory
36023adadaf3SJed Brown       with column-major ordering within blocks.
3603dfb205c3SBarry Smith 
360469b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateBAIJ(), MatCreateSeqBAIJ()
3605c75a6043SHong Zhang 
3606c75a6043SHong Zhang @*/
3607c3c607ccSBarry Smith PetscErrorCode  MatCreateSeqBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt i[],PetscInt j[],PetscScalar a[],Mat *mat)
3608c75a6043SHong Zhang {
3609c75a6043SHong Zhang   PetscInt       ii;
3610c75a6043SHong Zhang   Mat_SeqBAIJ    *baij;
3611c75a6043SHong Zhang 
3612c75a6043SHong Zhang   PetscFunctionBegin;
36135f80ce2aSJacob Faibussowitsch   PetscCheck(bs == 1,PETSC_COMM_SELF,PETSC_ERR_SUP,"block size %" PetscInt_FMT " > 1 is not supported yet",bs);
36145f80ce2aSJacob Faibussowitsch   if (m > 0) PetscCheck(i[0] == 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0");
3615c75a6043SHong Zhang 
36169566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm,mat));
36179566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat,m,n,m,n));
36189566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat,MATSEQBAIJ));
36199566063dSJacob Faibussowitsch   PetscCall(MatSeqBAIJSetPreallocation(*mat,bs,MAT_SKIP_ALLOCATION,NULL));
3620c75a6043SHong Zhang   baij = (Mat_SeqBAIJ*)(*mat)->data;
36219566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m,&baij->imax,m,&baij->ilen));
36229566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectMemory((PetscObject)*mat,2*m*sizeof(PetscInt)));
3623c75a6043SHong Zhang 
3624c75a6043SHong Zhang   baij->i = i;
3625c75a6043SHong Zhang   baij->j = j;
3626c75a6043SHong Zhang   baij->a = a;
362726fbe8dcSKarl Rupp 
3628c75a6043SHong Zhang   baij->singlemalloc = PETSC_FALSE;
3629c75a6043SHong Zhang   baij->nonew        = -1;             /*this indicates that inserting a new value in the matrix that generates a new nonzero is an error*/
3630e6b907acSBarry Smith   baij->free_a       = PETSC_FALSE;
3631e6b907acSBarry Smith   baij->free_ij      = PETSC_FALSE;
3632c75a6043SHong Zhang 
3633c75a6043SHong Zhang   for (ii=0; ii<m; ii++) {
3634c75a6043SHong Zhang     baij->ilen[ii] = baij->imax[ii] = i[ii+1] - i[ii];
36356bdcaf15SBarry Smith     PetscCheck(i[ii+1] - i[ii] >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row length in i (row indices) row = %" PetscInt_FMT " length = %" PetscInt_FMT,ii,i[ii+1] - i[ii]);
3636c75a6043SHong Zhang   }
363776bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
3638c75a6043SHong Zhang     for (ii=0; ii<baij->i[m]; ii++) {
36396bdcaf15SBarry Smith       PetscCheck(j[ii] >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column index at location = %" PetscInt_FMT " index = %" PetscInt_FMT,ii,j[ii]);
36406bdcaf15SBarry Smith       PetscCheck(j[ii] <= n - 1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column index to large at location = %" PetscInt_FMT " index = %" PetscInt_FMT,ii,j[ii]);
3641c75a6043SHong Zhang     }
364276bd3646SJed Brown   }
3643c75a6043SHong Zhang 
36449566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*mat,MAT_FINAL_ASSEMBLY));
36459566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*mat,MAT_FINAL_ASSEMBLY));
3646c75a6043SHong Zhang   PetscFunctionReturn(0);
3647c75a6043SHong Zhang }
3648bdf6f3fcSHong Zhang 
3649bdf6f3fcSHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_SeqBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat)
3650bdf6f3fcSHong Zhang {
36518761c3d6SHong Zhang   PetscMPIInt    size;
3652bdf6f3fcSHong Zhang 
3653bdf6f3fcSHong Zhang   PetscFunctionBegin;
36549566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm,&size));
36558761c3d6SHong Zhang   if (size == 1 && scall == MAT_REUSE_MATRIX) {
36569566063dSJacob Faibussowitsch     PetscCall(MatCopy(inmat,*outmat,SAME_NONZERO_PATTERN));
36578761c3d6SHong Zhang   } else {
36589566063dSJacob Faibussowitsch     PetscCall(MatCreateMPIMatConcatenateSeqMat_MPIBAIJ(comm,inmat,n,scall,outmat));
36598761c3d6SHong Zhang   }
3660bdf6f3fcSHong Zhang   PetscFunctionReturn(0);
3661bdf6f3fcSHong Zhang }
3662