1be1d678aSKris Buschelman 22593348eSBarry Smith /* 3b6490206SBarry Smith Defines the basic matrix operations for the BAIJ (compressed row) 42593348eSBarry Smith matrix storage format. 52593348eSBarry Smith */ 6c6db04a5SJed Brown #include <../src/mat/impls/baij/seq/baij.h> /*I "petscmat.h" I*/ 7c6db04a5SJed Brown #include <petscblaslapack.h> 8af0996ceSBarry Smith #include <petsc/private/kernels/blockinvert.h> 9af0996ceSBarry Smith #include <petsc/private/kernels/blockmatmult.h> 1043516a2dSKris Buschelman 117ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE) 127ea3e4caSstefano_zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat,MatType,MatReuse,Mat*); 137ea3e4caSstefano_zampini #endif 147ea3e4caSstefano_zampini 15b5b72c8aSIrina Sokolova #if defined(PETSC_HAVE_MKL_SPARSE_OPTIMIZE) 16fd9d3c67SJed Brown PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqBAIJMKL(Mat,MatType,MatReuse,Mat*); 17b5b72c8aSIrina Sokolova #endif 18c9225affSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat,MatType,MatReuse,Mat*); 19b5b72c8aSIrina Sokolova 20857cbf51SRichard Tran Mills PetscErrorCode MatGetColumnReductions_SeqBAIJ(Mat A,PetscInt type,PetscReal *reductions) 219463ebdaSPierre Jolivet { 229463ebdaSPierre Jolivet Mat_SeqBAIJ *a_aij = (Mat_SeqBAIJ*) A->data; 23857cbf51SRichard Tran Mills PetscInt m,n,i; 249463ebdaSPierre Jolivet PetscInt ib,jb,bs = A->rmap->bs; 259463ebdaSPierre Jolivet MatScalar *a_val = a_aij->a; 269463ebdaSPierre Jolivet 279463ebdaSPierre Jolivet PetscFunctionBegin; 289566063dSJacob Faibussowitsch PetscCall(MatGetSize(A,&m,&n)); 29857cbf51SRichard Tran Mills for (i=0; i<n; i++) reductions[i] = 0.0; 309463ebdaSPierre Jolivet if (type == NORM_2) { 319463ebdaSPierre Jolivet for (i=a_aij->i[0]; i<a_aij->i[A->rmap->n/bs]; i++) { 329463ebdaSPierre Jolivet for (jb=0; jb<bs; jb++) { 339463ebdaSPierre Jolivet for (ib=0; ib<bs; ib++) { 34857cbf51SRichard Tran Mills reductions[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val * *a_val); 359463ebdaSPierre Jolivet a_val++; 369463ebdaSPierre Jolivet } 379463ebdaSPierre Jolivet } 389463ebdaSPierre Jolivet } 399463ebdaSPierre Jolivet } else if (type == NORM_1) { 409463ebdaSPierre Jolivet for (i=a_aij->i[0]; i<a_aij->i[A->rmap->n/bs]; i++) { 419463ebdaSPierre Jolivet for (jb=0; jb<bs; jb++) { 429463ebdaSPierre Jolivet for (ib=0; ib<bs; ib++) { 43857cbf51SRichard Tran Mills reductions[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val); 449463ebdaSPierre Jolivet a_val++; 459463ebdaSPierre Jolivet } 469463ebdaSPierre Jolivet } 479463ebdaSPierre Jolivet } 489463ebdaSPierre Jolivet } else if (type == NORM_INFINITY) { 499463ebdaSPierre Jolivet for (i=a_aij->i[0]; i<a_aij->i[A->rmap->n/bs]; i++) { 509463ebdaSPierre Jolivet for (jb=0; jb<bs; jb++) { 519463ebdaSPierre Jolivet for (ib=0; ib<bs; ib++) { 529463ebdaSPierre Jolivet int col = A->cmap->rstart + a_aij->j[i] * bs + jb; 53857cbf51SRichard Tran Mills reductions[col] = PetscMax(PetscAbsScalar(*a_val), reductions[col]); 549463ebdaSPierre Jolivet a_val++; 559463ebdaSPierre Jolivet } 569463ebdaSPierre Jolivet } 579463ebdaSPierre Jolivet } 58857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) { 59857cbf51SRichard Tran Mills for (i=a_aij->i[0]; i<a_aij->i[A->rmap->n/bs]; i++) { 60857cbf51SRichard Tran Mills for (jb=0; jb<bs; jb++) { 61857cbf51SRichard Tran Mills for (ib=0; ib<bs; ib++) { 62857cbf51SRichard Tran Mills reductions[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscRealPart(*a_val); 63857cbf51SRichard Tran Mills a_val++; 64857cbf51SRichard Tran Mills } 65857cbf51SRichard Tran Mills } 66857cbf51SRichard Tran Mills } 67857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) { 68857cbf51SRichard Tran Mills for (i=a_aij->i[0]; i<a_aij->i[A->rmap->n/bs]; i++) { 69857cbf51SRichard Tran Mills for (jb=0; jb<bs; jb++) { 70857cbf51SRichard Tran Mills for (ib=0; ib<bs; ib++) { 71857cbf51SRichard Tran Mills reductions[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscImaginaryPart(*a_val); 72857cbf51SRichard Tran Mills a_val++; 73857cbf51SRichard Tran Mills } 74857cbf51SRichard Tran Mills } 75857cbf51SRichard Tran Mills } 76857cbf51SRichard Tran Mills } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Unknown reduction type"); 779463ebdaSPierre Jolivet if (type == NORM_2) { 78857cbf51SRichard Tran Mills for (i=0; i<n; i++) reductions[i] = PetscSqrtReal(reductions[i]); 79857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 80857cbf51SRichard Tran Mills for (i=0; i<n; i++) reductions[i] /= m; 819463ebdaSPierre Jolivet } 829463ebdaSPierre Jolivet PetscFunctionReturn(0); 839463ebdaSPierre Jolivet } 849463ebdaSPierre Jolivet 85713ccfa9SJed Brown PetscErrorCode MatInvertBlockDiagonal_SeqBAIJ(Mat A,const PetscScalar **values) 86b01c7715SBarry Smith { 87b01c7715SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*) A->data; 88de80f912SBarry Smith PetscInt *diag_offset,i,bs = A->rmap->bs,mbs = a->mbs,ipvt[5],bs2 = bs*bs,*v_pivots; 897f0c90edSBarry Smith MatScalar *v = a->a,*odiag,*diag,work[25],*v_work; 9062bba022SBarry Smith PetscReal shift = 0.0; 911a9391e3SHong Zhang PetscBool allowzeropivot,zeropivotdetected=PETSC_FALSE; 92b01c7715SBarry Smith 93b01c7715SBarry Smith PetscFunctionBegin; 94a455e926SHong Zhang allowzeropivot = PetscNot(A->erroriffailure); 95a455e926SHong Zhang 969797317bSBarry Smith if (a->idiagvalid) { 979797317bSBarry Smith if (values) *values = a->idiag; 989797317bSBarry Smith PetscFunctionReturn(0); 999797317bSBarry Smith } 1009566063dSJacob Faibussowitsch PetscCall(MatMarkDiagonal_SeqBAIJ(A)); 101b01c7715SBarry Smith diag_offset = a->diag; 102b01c7715SBarry Smith if (!a->idiag) { 1039566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs2*mbs,&a->idiag)); 1049566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)A,bs2*mbs*sizeof(PetscScalar))); 105b01c7715SBarry Smith } 106b01c7715SBarry Smith diag = a->idiag; 107bbead8a2SBarry Smith if (values) *values = a->idiag; 108b01c7715SBarry Smith /* factor and invert each block */ 109521d7252SBarry Smith switch (bs) { 110ab040260SJed Brown case 1: 111ab040260SJed Brown for (i=0; i<mbs; i++) { 112ab040260SJed Brown odiag = v + 1*diag_offset[i]; 113ab040260SJed Brown diag[0] = odiag[0]; 114ec1892c8SHong Zhang 115ec1892c8SHong Zhang if (PetscAbsScalar(diag[0] + shift) < PETSC_MACHINE_EPSILON) { 116ec1892c8SHong Zhang if (allowzeropivot) { 1177b6c816cSBarry Smith A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT; 1187b6c816cSBarry Smith A->factorerror_zeropivot_value = PetscAbsScalar(diag[0]); 1197b6c816cSBarry Smith A->factorerror_zeropivot_row = i; 1209566063dSJacob Faibussowitsch PetscCall(PetscInfo(A,"Zero pivot, row %" PetscInt_FMT "\n",i)); 12198921bdaSJacob Faibussowitsch } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_MAT_LU_ZRPVT,"Zero pivot, row %" PetscInt_FMT " pivot value %g tolerance %g",i,(double)PetscAbsScalar(diag[0]),(double)PETSC_MACHINE_EPSILON); 122ec1892c8SHong Zhang } 123ec1892c8SHong Zhang 124d4a378daSJed Brown diag[0] = (PetscScalar)1.0 / (diag[0] + shift); 125ab040260SJed Brown diag += 1; 126ab040260SJed Brown } 127ab040260SJed Brown break; 128b01c7715SBarry Smith case 2: 129b01c7715SBarry Smith for (i=0; i<mbs; i++) { 130b01c7715SBarry Smith odiag = v + 4*diag_offset[i]; 131b01c7715SBarry Smith diag[0] = odiag[0]; diag[1] = odiag[1]; diag[2] = odiag[2]; diag[3] = odiag[3]; 1329566063dSJacob Faibussowitsch PetscCall(PetscKernel_A_gets_inverse_A_2(diag,shift,allowzeropivot,&zeropivotdetected)); 1337b6c816cSBarry Smith if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT; 134b01c7715SBarry Smith diag += 4; 135b01c7715SBarry Smith } 136b01c7715SBarry Smith break; 137b01c7715SBarry Smith case 3: 138b01c7715SBarry Smith for (i=0; i<mbs; i++) { 139b01c7715SBarry Smith odiag = v + 9*diag_offset[i]; 140b01c7715SBarry Smith diag[0] = odiag[0]; diag[1] = odiag[1]; diag[2] = odiag[2]; diag[3] = odiag[3]; 141b01c7715SBarry Smith diag[4] = odiag[4]; diag[5] = odiag[5]; diag[6] = odiag[6]; diag[7] = odiag[7]; 142b01c7715SBarry Smith diag[8] = odiag[8]; 1439566063dSJacob Faibussowitsch PetscCall(PetscKernel_A_gets_inverse_A_3(diag,shift,allowzeropivot,&zeropivotdetected)); 1447b6c816cSBarry Smith if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT; 145b01c7715SBarry Smith diag += 9; 146b01c7715SBarry Smith } 147b01c7715SBarry Smith break; 148b01c7715SBarry Smith case 4: 149b01c7715SBarry Smith for (i=0; i<mbs; i++) { 150b01c7715SBarry Smith odiag = v + 16*diag_offset[i]; 1519566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(diag,odiag,16)); 1529566063dSJacob Faibussowitsch PetscCall(PetscKernel_A_gets_inverse_A_4(diag,shift,allowzeropivot,&zeropivotdetected)); 1537b6c816cSBarry Smith if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT; 154b01c7715SBarry Smith diag += 16; 155b01c7715SBarry Smith } 156b01c7715SBarry Smith break; 157b01c7715SBarry Smith case 5: 158b01c7715SBarry Smith for (i=0; i<mbs; i++) { 159b01c7715SBarry Smith odiag = v + 25*diag_offset[i]; 1609566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(diag,odiag,25)); 1619566063dSJacob Faibussowitsch PetscCall(PetscKernel_A_gets_inverse_A_5(diag,ipvt,work,shift,allowzeropivot,&zeropivotdetected)); 1627b6c816cSBarry Smith if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT; 163b01c7715SBarry Smith diag += 25; 164b01c7715SBarry Smith } 165b01c7715SBarry Smith break; 166d49b2adcSBarry Smith case 6: 167d49b2adcSBarry Smith for (i=0; i<mbs; i++) { 168d49b2adcSBarry Smith odiag = v + 36*diag_offset[i]; 1699566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(diag,odiag,36)); 1709566063dSJacob Faibussowitsch PetscCall(PetscKernel_A_gets_inverse_A_6(diag,shift,allowzeropivot,&zeropivotdetected)); 1717b6c816cSBarry Smith if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT; 172d49b2adcSBarry Smith diag += 36; 173d49b2adcSBarry Smith } 174d49b2adcSBarry Smith break; 175de80f912SBarry Smith case 7: 176de80f912SBarry Smith for (i=0; i<mbs; i++) { 177de80f912SBarry Smith odiag = v + 49*diag_offset[i]; 1789566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(diag,odiag,49)); 1799566063dSJacob Faibussowitsch PetscCall(PetscKernel_A_gets_inverse_A_7(diag,shift,allowzeropivot,&zeropivotdetected)); 1807b6c816cSBarry Smith if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT; 181de80f912SBarry Smith diag += 49; 182de80f912SBarry Smith } 183de80f912SBarry Smith break; 184b01c7715SBarry Smith default: 1859566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(bs,&v_work,bs,&v_pivots)); 186de80f912SBarry Smith for (i=0; i<mbs; i++) { 187de80f912SBarry Smith odiag = v + bs2*diag_offset[i]; 1889566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(diag,odiag,bs2)); 1899566063dSJacob Faibussowitsch PetscCall(PetscKernel_A_gets_inverse_A(bs,diag,v_pivots,v_work,allowzeropivot,&zeropivotdetected)); 1907b6c816cSBarry Smith if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT; 191de80f912SBarry Smith diag += bs2; 192de80f912SBarry Smith } 1939566063dSJacob Faibussowitsch PetscCall(PetscFree2(v_work,v_pivots)); 194b01c7715SBarry Smith } 195b01c7715SBarry Smith a->idiagvalid = PETSC_TRUE; 196b01c7715SBarry Smith PetscFunctionReturn(0); 197b01c7715SBarry Smith } 198b01c7715SBarry Smith 199e48d15efSToby Isaac PetscErrorCode MatSOR_SeqBAIJ(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2006d3beeddSMatthew Knepley { 2016d3beeddSMatthew Knepley Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 202e48d15efSToby Isaac PetscScalar *x,*work,*w,*workt,*t; 203e48d15efSToby Isaac const MatScalar *v,*aa = a->a, *idiag; 204e48d15efSToby Isaac const PetscScalar *b,*xb; 2055455b99fSToby Isaac PetscScalar s[7], xw[7]={0}; /* avoid some compilers thinking xw is uninitialized */ 206e48d15efSToby Isaac PetscInt m = a->mbs,i,i2,nz,bs = A->rmap->bs,bs2 = bs*bs,k,j,idx,it; 207c1ac3661SBarry Smith const PetscInt *diag,*ai = a->i,*aj = a->j,*vi; 208b01c7715SBarry Smith 209b01c7715SBarry Smith PetscFunctionBegin; 210b01c7715SBarry Smith its = its*lits; 2115f80ce2aSJacob Faibussowitsch PetscCheck(!(flag & SOR_EISENSTAT),PETSC_COMM_SELF,PETSC_ERR_SUP,"No support yet for Eisenstat"); 2125f80ce2aSJacob Faibussowitsch PetscCheck(its > 0,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Relaxation requires global its %" PetscInt_FMT " and local its %" PetscInt_FMT " both positive",its,lits); 2135f80ce2aSJacob Faibussowitsch PetscCheck(!fshift,PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for diagonal shift"); 2145f80ce2aSJacob Faibussowitsch PetscCheck(omega == 1.0,PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for non-trivial relaxation factor"); 2155f80ce2aSJacob Faibussowitsch PetscCheck(!(flag & SOR_APPLY_UPPER) && !(flag & SOR_APPLY_LOWER),PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for applying upper or lower triangular parts"); 216b01c7715SBarry Smith 2179566063dSJacob Faibussowitsch if (!a->idiagvalid) PetscCall(MatInvertBlockDiagonal(A,NULL)); 218b01c7715SBarry Smith 219b2ec919aSToby Isaac if (!m) PetscFunctionReturn(0); 220b01c7715SBarry Smith diag = a->diag; 221b01c7715SBarry Smith idiag = a->idiag; 222de80f912SBarry Smith k = PetscMax(A->rmap->n,A->cmap->n); 223e48d15efSToby Isaac if (!a->mult_work) { 2249566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(k+1,&a->mult_work)); 225de80f912SBarry Smith } 2263475c22fSBarry Smith if (!a->sor_workt) { 2279566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(k,&a->sor_workt)); 228de80f912SBarry Smith } 229de80f912SBarry Smith if (!a->sor_work) { 2309566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs,&a->sor_work)); 231de80f912SBarry Smith } 2323475c22fSBarry Smith work = a->mult_work; 2333475c22fSBarry Smith t = a->sor_workt; 234de80f912SBarry Smith w = a->sor_work; 235de80f912SBarry Smith 2369566063dSJacob Faibussowitsch PetscCall(VecGetArray(xx,&x)); 2379566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(bb,&b)); 238de80f912SBarry Smith 239de80f912SBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 240de80f912SBarry Smith if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) { 241e48d15efSToby Isaac switch (bs) { 242e48d15efSToby Isaac case 1: 243e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_1(x,idiag,b); 244e48d15efSToby Isaac t[0] = b[0]; 245e48d15efSToby Isaac i2 = 1; 246e48d15efSToby Isaac idiag += 1; 247e48d15efSToby Isaac for (i=1; i<m; i++) { 248e48d15efSToby Isaac v = aa + ai[i]; 249e48d15efSToby Isaac vi = aj + ai[i]; 250e48d15efSToby Isaac nz = diag[i] - ai[i]; 251e48d15efSToby Isaac s[0] = b[i2]; 252e48d15efSToby Isaac for (j=0; j<nz; j++) { 253e48d15efSToby Isaac xw[0] = x[vi[j]]; 254e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_1(s,(v+j),xw); 255e48d15efSToby Isaac } 256e48d15efSToby Isaac t[i2] = s[0]; 257e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_1(xw,idiag,s); 258e48d15efSToby Isaac x[i2] = xw[0]; 259e48d15efSToby Isaac idiag += 1; 260e48d15efSToby Isaac i2 += 1; 261e48d15efSToby Isaac } 262e48d15efSToby Isaac break; 263e48d15efSToby Isaac case 2: 264e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_2(x,idiag,b); 265e48d15efSToby Isaac t[0] = b[0]; t[1] = b[1]; 266e48d15efSToby Isaac i2 = 2; 267e48d15efSToby Isaac idiag += 4; 268e48d15efSToby Isaac for (i=1; i<m; i++) { 269e48d15efSToby Isaac v = aa + 4*ai[i]; 270e48d15efSToby Isaac vi = aj + ai[i]; 271e48d15efSToby Isaac nz = diag[i] - ai[i]; 272e48d15efSToby Isaac s[0] = b[i2]; s[1] = b[i2+1]; 273e48d15efSToby Isaac for (j=0; j<nz; j++) { 274e48d15efSToby Isaac idx = 2*vi[j]; 275e48d15efSToby Isaac it = 4*j; 276e48d15efSToby Isaac xw[0] = x[idx]; xw[1] = x[1+idx]; 277e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_2(s,(v+it),xw); 278e48d15efSToby Isaac } 279e48d15efSToby Isaac t[i2] = s[0]; t[i2+1] = s[1]; 280e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_2(xw,idiag,s); 281e48d15efSToby Isaac x[i2] = xw[0]; x[i2+1] = xw[1]; 282e48d15efSToby Isaac idiag += 4; 283e48d15efSToby Isaac i2 += 2; 284e48d15efSToby Isaac } 285e48d15efSToby Isaac break; 286e48d15efSToby Isaac case 3: 287e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_3(x,idiag,b); 288e48d15efSToby Isaac t[0] = b[0]; t[1] = b[1]; t[2] = b[2]; 289e48d15efSToby Isaac i2 = 3; 290e48d15efSToby Isaac idiag += 9; 291e48d15efSToby Isaac for (i=1; i<m; i++) { 292e48d15efSToby Isaac v = aa + 9*ai[i]; 293e48d15efSToby Isaac vi = aj + ai[i]; 294e48d15efSToby Isaac nz = diag[i] - ai[i]; 295e48d15efSToby Isaac s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2]; 296e48d15efSToby Isaac while (nz--) { 297e48d15efSToby Isaac idx = 3*(*vi++); 298e48d15efSToby Isaac xw[0] = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; 299e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_3(s,v,xw); 300e48d15efSToby Isaac v += 9; 301e48d15efSToby Isaac } 302e48d15efSToby Isaac t[i2] = s[0]; t[i2+1] = s[1]; t[i2+2] = s[2]; 303e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_3(xw,idiag,s); 304e48d15efSToby Isaac x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2]; 305e48d15efSToby Isaac idiag += 9; 306e48d15efSToby Isaac i2 += 3; 307e48d15efSToby Isaac } 308e48d15efSToby Isaac break; 309e48d15efSToby Isaac case 4: 310e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_4(x,idiag,b); 311e48d15efSToby Isaac t[0] = b[0]; t[1] = b[1]; t[2] = b[2]; t[3] = b[3]; 312e48d15efSToby Isaac i2 = 4; 313e48d15efSToby Isaac idiag += 16; 314e48d15efSToby Isaac for (i=1; i<m; i++) { 315e48d15efSToby Isaac v = aa + 16*ai[i]; 316e48d15efSToby Isaac vi = aj + ai[i]; 317e48d15efSToby Isaac nz = diag[i] - ai[i]; 318e48d15efSToby Isaac s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2]; s[3] = b[i2+3]; 319e48d15efSToby Isaac while (nz--) { 320e48d15efSToby Isaac idx = 4*(*vi++); 321e48d15efSToby Isaac xw[0] = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; xw[3] = x[3+idx]; 322e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_4(s,v,xw); 323e48d15efSToby Isaac v += 16; 324e48d15efSToby Isaac } 325e48d15efSToby Isaac t[i2] = s[0]; t[i2+1] = s[1]; t[i2+2] = s[2]; t[i2 + 3] = s[3]; 326e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_4(xw,idiag,s); 327e48d15efSToby Isaac x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2]; x[i2+3] = xw[3]; 328e48d15efSToby Isaac idiag += 16; 329e48d15efSToby Isaac i2 += 4; 330e48d15efSToby Isaac } 331e48d15efSToby Isaac break; 332e48d15efSToby Isaac case 5: 333e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_5(x,idiag,b); 334e48d15efSToby Isaac t[0] = b[0]; t[1] = b[1]; t[2] = b[2]; t[3] = b[3]; t[4] = b[4]; 335e48d15efSToby Isaac i2 = 5; 336e48d15efSToby Isaac idiag += 25; 337e48d15efSToby Isaac for (i=1; i<m; i++) { 338e48d15efSToby Isaac v = aa + 25*ai[i]; 339e48d15efSToby Isaac vi = aj + ai[i]; 340e48d15efSToby Isaac nz = diag[i] - ai[i]; 341e48d15efSToby Isaac s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2]; s[3] = b[i2+3]; s[4] = b[i2+4]; 342e48d15efSToby Isaac while (nz--) { 343e48d15efSToby Isaac idx = 5*(*vi++); 344e48d15efSToby Isaac xw[0] = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; xw[3] = x[3+idx]; xw[4] = x[4+idx]; 345e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_5(s,v,xw); 346e48d15efSToby Isaac v += 25; 347e48d15efSToby Isaac } 348e48d15efSToby Isaac t[i2] = s[0]; t[i2+1] = s[1]; t[i2+2] = s[2]; t[i2+3] = s[3]; t[i2+4] = s[4]; 349e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_5(xw,idiag,s); 350e48d15efSToby Isaac x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2]; x[i2+3] = xw[3]; x[i2+4] = xw[4]; 351e48d15efSToby Isaac idiag += 25; 352e48d15efSToby Isaac i2 += 5; 353e48d15efSToby Isaac } 354e48d15efSToby Isaac break; 355e48d15efSToby Isaac case 6: 356e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_6(x,idiag,b); 357e48d15efSToby Isaac t[0] = b[0]; t[1] = b[1]; t[2] = b[2]; t[3] = b[3]; t[4] = b[4]; t[5] = b[5]; 358e48d15efSToby Isaac i2 = 6; 359e48d15efSToby Isaac idiag += 36; 360e48d15efSToby Isaac for (i=1; i<m; i++) { 361e48d15efSToby Isaac v = aa + 36*ai[i]; 362e48d15efSToby Isaac vi = aj + ai[i]; 363e48d15efSToby Isaac nz = diag[i] - ai[i]; 364e48d15efSToby Isaac s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2]; s[3] = b[i2+3]; s[4] = b[i2+4]; s[5] = b[i2+5]; 365e48d15efSToby Isaac while (nz--) { 366e48d15efSToby Isaac idx = 6*(*vi++); 367e48d15efSToby Isaac xw[0] = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; 368e48d15efSToby Isaac xw[3] = x[3+idx]; xw[4] = x[4+idx]; xw[5] = x[5+idx]; 369e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_6(s,v,xw); 370e48d15efSToby Isaac v += 36; 371e48d15efSToby Isaac } 372e48d15efSToby Isaac t[i2] = s[0]; t[i2+1] = s[1]; t[i2+2] = s[2]; 373e48d15efSToby Isaac t[i2+3] = s[3]; t[i2+4] = s[4]; t[i2+5] = s[5]; 374e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_6(xw,idiag,s); 375e48d15efSToby Isaac x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2]; x[i2+3] = xw[3]; x[i2+4] = xw[4]; x[i2+5] = xw[5]; 376e48d15efSToby Isaac idiag += 36; 377e48d15efSToby Isaac i2 += 6; 378e48d15efSToby Isaac } 379e48d15efSToby Isaac break; 380e48d15efSToby Isaac case 7: 381e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_7(x,idiag,b); 382e48d15efSToby Isaac t[0] = b[0]; t[1] = b[1]; t[2] = b[2]; 383e48d15efSToby Isaac t[3] = b[3]; t[4] = b[4]; t[5] = b[5]; t[6] = b[6]; 384e48d15efSToby Isaac i2 = 7; 385e48d15efSToby Isaac idiag += 49; 386e48d15efSToby Isaac for (i=1; i<m; i++) { 387e48d15efSToby Isaac v = aa + 49*ai[i]; 388e48d15efSToby Isaac vi = aj + ai[i]; 389e48d15efSToby Isaac nz = diag[i] - ai[i]; 390e48d15efSToby Isaac s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2]; 391e48d15efSToby Isaac s[3] = b[i2+3]; s[4] = b[i2+4]; s[5] = b[i2+5]; s[6] = b[i2+6]; 392e48d15efSToby Isaac while (nz--) { 393e48d15efSToby Isaac idx = 7*(*vi++); 394e48d15efSToby Isaac xw[0] = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; 395e48d15efSToby Isaac xw[3] = x[3+idx]; xw[4] = x[4+idx]; xw[5] = x[5+idx]; xw[6] = x[6+idx]; 396e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_7(s,v,xw); 397e48d15efSToby Isaac v += 49; 398e48d15efSToby Isaac } 399e48d15efSToby Isaac t[i2] = s[0]; t[i2+1] = s[1]; t[i2+2] = s[2]; 400e48d15efSToby Isaac t[i2+3] = s[3]; t[i2+4] = s[4]; t[i2+5] = s[5]; t[i2+6] = s[6]; 401e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_7(xw,idiag,s); 402e48d15efSToby Isaac x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2]; 403e48d15efSToby Isaac x[i2+3] = xw[3]; x[i2+4] = xw[4]; x[i2+5] = xw[5]; x[i2+6] = xw[6]; 404e48d15efSToby Isaac idiag += 49; 405e48d15efSToby Isaac i2 += 7; 406e48d15efSToby Isaac } 407e48d15efSToby Isaac break; 408e48d15efSToby Isaac default: 40996b95a6bSBarry Smith PetscKernel_w_gets_Ar_times_v(bs,bs,b,idiag,x); 4109566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(t,b,bs)); 411de80f912SBarry Smith i2 = bs; 412de80f912SBarry Smith idiag += bs2; 413de80f912SBarry Smith for (i=1; i<m; i++) { 414de80f912SBarry Smith v = aa + bs2*ai[i]; 415de80f912SBarry Smith vi = aj + ai[i]; 416de80f912SBarry Smith nz = diag[i] - ai[i]; 417de80f912SBarry Smith 4189566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(w,b+i2,bs)); 419de80f912SBarry Smith /* copy all rows of x that are needed into contiguous space */ 420de80f912SBarry Smith workt = work; 421de80f912SBarry Smith for (j=0; j<nz; j++) { 4229566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(workt,x + bs*(*vi++),bs)); 423de80f912SBarry Smith workt += bs; 424de80f912SBarry Smith } 42596b95a6bSBarry Smith PetscKernel_w_gets_w_minus_Ar_times_v(bs,bs*nz,w,v,work); 4269566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(t+i2,w,bs)); 42796b95a6bSBarry Smith PetscKernel_w_gets_Ar_times_v(bs,bs,w,idiag,x+i2); 428de80f912SBarry Smith 429de80f912SBarry Smith idiag += bs2; 430de80f912SBarry Smith i2 += bs; 431de80f912SBarry Smith } 432e48d15efSToby Isaac break; 433e48d15efSToby Isaac } 434de80f912SBarry Smith /* for logging purposes assume number of nonzero in lower half is 1/2 of total */ 4359566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(1.0*bs2*a->nz)); 436e48d15efSToby Isaac xb = t; 437de80f912SBarry Smith } 438e48d15efSToby Isaac else xb = b; 439de80f912SBarry Smith if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) { 440e48d15efSToby Isaac idiag = a->idiag+bs2*(a->mbs-1); 441e48d15efSToby Isaac i2 = bs * (m-1); 442e48d15efSToby Isaac switch (bs) { 443e48d15efSToby Isaac case 1: 444e48d15efSToby Isaac s[0] = xb[i2]; 445e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_1(xw,idiag,s); 446e48d15efSToby Isaac x[i2] = xw[0]; 447e48d15efSToby Isaac i2 -= 1; 448e48d15efSToby Isaac for (i=m-2; i>=0; i--) { 449e48d15efSToby Isaac v = aa + (diag[i]+1); 450e48d15efSToby Isaac vi = aj + diag[i] + 1; 451e48d15efSToby Isaac nz = ai[i+1] - diag[i] - 1; 452e48d15efSToby Isaac s[0] = xb[i2]; 453e48d15efSToby Isaac for (j=0; j<nz; j++) { 454e48d15efSToby Isaac xw[0] = x[vi[j]]; 455e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_1(s,(v+j),xw); 456e48d15efSToby Isaac } 457e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_1(xw,idiag,s); 458e48d15efSToby Isaac x[i2] = xw[0]; 459e48d15efSToby Isaac idiag -= 1; 460e48d15efSToby Isaac i2 -= 1; 461e48d15efSToby Isaac } 462e48d15efSToby Isaac break; 463e48d15efSToby Isaac case 2: 464e48d15efSToby Isaac s[0] = xb[i2]; s[1] = xb[i2+1]; 465e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_2(xw,idiag,s); 466e48d15efSToby Isaac x[i2] = xw[0]; x[i2+1] = xw[1]; 467e48d15efSToby Isaac i2 -= 2; 468e48d15efSToby Isaac idiag -= 4; 469e48d15efSToby Isaac for (i=m-2; i>=0; i--) { 470e48d15efSToby Isaac v = aa + 4*(diag[i] + 1); 471e48d15efSToby Isaac vi = aj + diag[i] + 1; 472e48d15efSToby Isaac nz = ai[i+1] - diag[i] - 1; 473e48d15efSToby Isaac s[0] = xb[i2]; s[1] = xb[i2+1]; 474e48d15efSToby Isaac for (j=0; j<nz; j++) { 475e48d15efSToby Isaac idx = 2*vi[j]; 476e48d15efSToby Isaac it = 4*j; 477e48d15efSToby Isaac xw[0] = x[idx]; xw[1] = x[1+idx]; 478e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_2(s,(v+it),xw); 479e48d15efSToby Isaac } 480e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_2(xw,idiag,s); 481e48d15efSToby Isaac x[i2] = xw[0]; x[i2+1] = xw[1]; 482e48d15efSToby Isaac idiag -= 4; 483e48d15efSToby Isaac i2 -= 2; 484e48d15efSToby Isaac } 485e48d15efSToby Isaac break; 486e48d15efSToby Isaac case 3: 487e48d15efSToby Isaac s[0] = xb[i2]; s[1] = xb[i2+1]; s[2] = xb[i2+2]; 488e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_3(xw,idiag,s); 489e48d15efSToby Isaac x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2]; 490e48d15efSToby Isaac i2 -= 3; 491e48d15efSToby Isaac idiag -= 9; 492e48d15efSToby Isaac for (i=m-2; i>=0; i--) { 493e48d15efSToby Isaac v = aa + 9*(diag[i]+1); 494e48d15efSToby Isaac vi = aj + diag[i] + 1; 495e48d15efSToby Isaac nz = ai[i+1] - diag[i] - 1; 496e48d15efSToby Isaac s[0] = xb[i2]; s[1] = xb[i2+1]; s[2] = xb[i2+2]; 497e48d15efSToby Isaac while (nz--) { 498e48d15efSToby Isaac idx = 3*(*vi++); 499e48d15efSToby Isaac xw[0] = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; 500e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_3(s,v,xw); 501e48d15efSToby Isaac v += 9; 502e48d15efSToby Isaac } 503e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_3(xw,idiag,s); 504e48d15efSToby Isaac x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2]; 505e48d15efSToby Isaac idiag -= 9; 506e48d15efSToby Isaac i2 -= 3; 507e48d15efSToby Isaac } 508e48d15efSToby Isaac break; 509e48d15efSToby Isaac case 4: 510e48d15efSToby Isaac s[0] = xb[i2]; s[1] = xb[i2+1]; s[2] = xb[i2+2]; s[3] = xb[i2+3]; 511e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_4(xw,idiag,s); 512e48d15efSToby Isaac x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2]; x[i2+3] = xw[3]; 513e48d15efSToby Isaac i2 -= 4; 514e48d15efSToby Isaac idiag -= 16; 515e48d15efSToby Isaac for (i=m-2; i>=0; i--) { 516e48d15efSToby Isaac v = aa + 16*(diag[i]+1); 517e48d15efSToby Isaac vi = aj + diag[i] + 1; 518e48d15efSToby Isaac nz = ai[i+1] - diag[i] - 1; 519e48d15efSToby Isaac s[0] = xb[i2]; s[1] = xb[i2+1]; s[2] = xb[i2+2]; s[3] = xb[i2+3]; 520e48d15efSToby Isaac while (nz--) { 521e48d15efSToby Isaac idx = 4*(*vi++); 522e48d15efSToby Isaac xw[0] = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; xw[3] = x[3+idx]; 523e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_4(s,v,xw); 524e48d15efSToby Isaac v += 16; 525e48d15efSToby Isaac } 526e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_4(xw,idiag,s); 527e48d15efSToby Isaac x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2]; x[i2+3] = xw[3]; 528e48d15efSToby Isaac idiag -= 16; 529e48d15efSToby Isaac i2 -= 4; 530e48d15efSToby Isaac } 531e48d15efSToby Isaac break; 532e48d15efSToby Isaac case 5: 533e48d15efSToby Isaac s[0] = xb[i2]; s[1] = xb[i2+1]; s[2] = xb[i2+2]; s[3] = xb[i2+3]; s[4] = xb[i2+4]; 534e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_5(xw,idiag,s); 535e48d15efSToby Isaac x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2]; x[i2+3] = xw[3]; x[i2+4] = xw[4]; 536e48d15efSToby Isaac i2 -= 5; 537e48d15efSToby Isaac idiag -= 25; 538e48d15efSToby Isaac for (i=m-2; i>=0; i--) { 539e48d15efSToby Isaac v = aa + 25*(diag[i]+1); 540e48d15efSToby Isaac vi = aj + diag[i] + 1; 541e48d15efSToby Isaac nz = ai[i+1] - diag[i] - 1; 542e48d15efSToby Isaac s[0] = xb[i2]; s[1] = xb[i2+1]; s[2] = xb[i2+2]; s[3] = xb[i2+3]; s[4] = xb[i2+4]; 543e48d15efSToby Isaac while (nz--) { 544e48d15efSToby Isaac idx = 5*(*vi++); 545e48d15efSToby Isaac xw[0] = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; xw[3] = x[3+idx]; xw[4] = x[4+idx]; 546e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_5(s,v,xw); 547e48d15efSToby Isaac v += 25; 548e48d15efSToby Isaac } 549e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_5(xw,idiag,s); 550e48d15efSToby Isaac x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2]; x[i2+3] = xw[3]; x[i2+4] = xw[4]; 551e48d15efSToby Isaac idiag -= 25; 552e48d15efSToby Isaac i2 -= 5; 553e48d15efSToby Isaac } 554e48d15efSToby Isaac break; 555e48d15efSToby Isaac case 6: 556e48d15efSToby Isaac s[0] = xb[i2]; s[1] = xb[i2+1]; s[2] = xb[i2+2]; s[3] = xb[i2+3]; s[4] = xb[i2+4]; s[5] = xb[i2+5]; 557e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_6(xw,idiag,s); 558e48d15efSToby Isaac x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2]; x[i2+3] = xw[3]; x[i2+4] = xw[4]; x[i2+5] = xw[5]; 559e48d15efSToby Isaac i2 -= 6; 560e48d15efSToby Isaac idiag -= 36; 561e48d15efSToby Isaac for (i=m-2; i>=0; i--) { 562e48d15efSToby Isaac v = aa + 36*(diag[i]+1); 563e48d15efSToby Isaac vi = aj + diag[i] + 1; 564e48d15efSToby Isaac nz = ai[i+1] - diag[i] - 1; 565e48d15efSToby Isaac s[0] = xb[i2]; s[1] = xb[i2+1]; s[2] = xb[i2+2]; s[3] = xb[i2+3]; s[4] = xb[i2+4]; s[5] = xb[i2+5]; 566e48d15efSToby Isaac while (nz--) { 567e48d15efSToby Isaac idx = 6*(*vi++); 568e48d15efSToby Isaac xw[0] = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; 569e48d15efSToby Isaac xw[3] = x[3+idx]; xw[4] = x[4+idx]; xw[5] = x[5+idx]; 570e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_6(s,v,xw); 571e48d15efSToby Isaac v += 36; 572e48d15efSToby Isaac } 573e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_6(xw,idiag,s); 574e48d15efSToby Isaac x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2]; x[i2+3] = xw[3]; x[i2+4] = xw[4]; x[i2+5] = xw[5]; 575e48d15efSToby Isaac idiag -= 36; 576e48d15efSToby Isaac i2 -= 6; 577e48d15efSToby Isaac } 578e48d15efSToby Isaac break; 579e48d15efSToby Isaac case 7: 580e48d15efSToby Isaac s[0] = xb[i2]; s[1] = xb[i2+1]; s[2] = xb[i2+2]; 581e48d15efSToby Isaac s[3] = xb[i2+3]; s[4] = xb[i2+4]; s[5] = xb[i2+5]; s[6] = xb[i2+6]; 582e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_7(x,idiag,b); 583e48d15efSToby Isaac x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2]; 584e48d15efSToby Isaac x[i2+3] = xw[3]; x[i2+4] = xw[4]; x[i2+5] = xw[5]; x[i2+6] = xw[6]; 585e48d15efSToby Isaac i2 -= 7; 586e48d15efSToby Isaac idiag -= 49; 587e48d15efSToby Isaac for (i=m-2; i>=0; i--) { 588e48d15efSToby Isaac v = aa + 49*(diag[i]+1); 589e48d15efSToby Isaac vi = aj + diag[i] + 1; 590e48d15efSToby Isaac nz = ai[i+1] - diag[i] - 1; 591e48d15efSToby Isaac s[0] = xb[i2]; s[1] = xb[i2+1]; s[2] = xb[i2+2]; 592e48d15efSToby Isaac s[3] = xb[i2+3]; s[4] = xb[i2+4]; s[5] = xb[i2+5]; s[6] = xb[i2+6]; 593e48d15efSToby Isaac while (nz--) { 594e48d15efSToby Isaac idx = 7*(*vi++); 595e48d15efSToby Isaac xw[0] = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; 596e48d15efSToby Isaac xw[3] = x[3+idx]; xw[4] = x[4+idx]; xw[5] = x[5+idx]; xw[6] = x[6+idx]; 597e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_7(s,v,xw); 598e48d15efSToby Isaac v += 49; 599e48d15efSToby Isaac } 600e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_7(xw,idiag,s); 601e48d15efSToby Isaac x[i2] = xw[0]; x[i2+1] = xw[1]; x[i2+2] = xw[2]; 602e48d15efSToby Isaac x[i2+3] = xw[3]; x[i2+4] = xw[4]; x[i2+5] = xw[5]; x[i2+6] = xw[6]; 603e48d15efSToby Isaac idiag -= 49; 604e48d15efSToby Isaac i2 -= 7; 605e48d15efSToby Isaac } 606e48d15efSToby Isaac break; 607e48d15efSToby Isaac default: 6089566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(w,xb+i2,bs)); 60996b95a6bSBarry Smith PetscKernel_w_gets_Ar_times_v(bs,bs,w,idiag,x+i2); 610de80f912SBarry Smith i2 -= bs; 611e48d15efSToby Isaac idiag -= bs2; 612de80f912SBarry Smith for (i=m-2; i>=0; i--) { 613de80f912SBarry Smith v = aa + bs2*(diag[i]+1); 614de80f912SBarry Smith vi = aj + diag[i] + 1; 615de80f912SBarry Smith nz = ai[i+1] - diag[i] - 1; 616de80f912SBarry Smith 6179566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(w,xb+i2,bs)); 618de80f912SBarry Smith /* copy all rows of x that are needed into contiguous space */ 619de80f912SBarry Smith workt = work; 620de80f912SBarry Smith for (j=0; j<nz; j++) { 6219566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(workt,x + bs*(*vi++),bs)); 622de80f912SBarry Smith workt += bs; 623de80f912SBarry Smith } 62496b95a6bSBarry Smith PetscKernel_w_gets_w_minus_Ar_times_v(bs,bs*nz,w,v,work); 62596b95a6bSBarry Smith PetscKernel_w_gets_Ar_times_v(bs,bs,w,idiag,x+i2); 626e48d15efSToby Isaac 627de80f912SBarry Smith idiag -= bs2; 628de80f912SBarry Smith i2 -= bs; 629de80f912SBarry Smith } 630e48d15efSToby Isaac break; 631e48d15efSToby Isaac } 6329566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(1.0*bs2*(a->nz))); 633de80f912SBarry Smith } 634e48d15efSToby Isaac its--; 635e48d15efSToby Isaac } 636e48d15efSToby Isaac while (its--) { 637e48d15efSToby Isaac if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) { 638e48d15efSToby Isaac idiag = a->idiag; 639e48d15efSToby Isaac i2 = 0; 640e48d15efSToby Isaac switch (bs) { 641e48d15efSToby Isaac case 1: 642e48d15efSToby Isaac for (i=0; i<m; i++) { 643e48d15efSToby Isaac v = aa + ai[i]; 644e48d15efSToby Isaac vi = aj + ai[i]; 645e48d15efSToby Isaac nz = ai[i+1] - ai[i]; 646e48d15efSToby Isaac s[0] = b[i2]; 647e48d15efSToby Isaac for (j=0; j<nz; j++) { 648e48d15efSToby Isaac xw[0] = x[vi[j]]; 649e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_1(s,(v+j),xw); 650e48d15efSToby Isaac } 651e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_1(xw,idiag,s); 652e48d15efSToby Isaac x[i2] += xw[0]; 653e48d15efSToby Isaac idiag += 1; 654e48d15efSToby Isaac i2 += 1; 655e48d15efSToby Isaac } 656e48d15efSToby Isaac break; 657e48d15efSToby Isaac case 2: 658e48d15efSToby Isaac for (i=0; i<m; i++) { 659e48d15efSToby Isaac v = aa + 4*ai[i]; 660e48d15efSToby Isaac vi = aj + ai[i]; 661e48d15efSToby Isaac nz = ai[i+1] - ai[i]; 662e48d15efSToby Isaac s[0] = b[i2]; s[1] = b[i2+1]; 663e48d15efSToby Isaac for (j=0; j<nz; j++) { 664e48d15efSToby Isaac idx = 2*vi[j]; 665e48d15efSToby Isaac it = 4*j; 666e48d15efSToby Isaac xw[0] = x[idx]; xw[1] = x[1+idx]; 667e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_2(s,(v+it),xw); 668e48d15efSToby Isaac } 669e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_2(xw,idiag,s); 670e48d15efSToby Isaac x[i2] += xw[0]; x[i2+1] += xw[1]; 671e48d15efSToby Isaac idiag += 4; 672e48d15efSToby Isaac i2 += 2; 673e48d15efSToby Isaac } 674e48d15efSToby Isaac break; 675e48d15efSToby Isaac case 3: 676e48d15efSToby Isaac for (i=0; i<m; i++) { 677e48d15efSToby Isaac v = aa + 9*ai[i]; 678e48d15efSToby Isaac vi = aj + ai[i]; 679e48d15efSToby Isaac nz = ai[i+1] - ai[i]; 680e48d15efSToby Isaac s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2]; 681e48d15efSToby Isaac while (nz--) { 682e48d15efSToby Isaac idx = 3*(*vi++); 683e48d15efSToby Isaac xw[0] = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; 684e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_3(s,v,xw); 685e48d15efSToby Isaac v += 9; 686e48d15efSToby Isaac } 687e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_3(xw,idiag,s); 688e48d15efSToby Isaac x[i2] += xw[0]; x[i2+1] += xw[1]; x[i2+2] += xw[2]; 689e48d15efSToby Isaac idiag += 9; 690e48d15efSToby Isaac i2 += 3; 691e48d15efSToby Isaac } 692e48d15efSToby Isaac break; 693e48d15efSToby Isaac case 4: 694e48d15efSToby Isaac for (i=0; i<m; i++) { 695e48d15efSToby Isaac v = aa + 16*ai[i]; 696e48d15efSToby Isaac vi = aj + ai[i]; 697e48d15efSToby Isaac nz = ai[i+1] - ai[i]; 698e48d15efSToby Isaac s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2]; s[3] = b[i2+3]; 699e48d15efSToby Isaac while (nz--) { 700e48d15efSToby Isaac idx = 4*(*vi++); 701e48d15efSToby Isaac xw[0] = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; xw[3] = x[3+idx]; 702e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_4(s,v,xw); 703e48d15efSToby Isaac v += 16; 704e48d15efSToby Isaac } 705e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_4(xw,idiag,s); 706e48d15efSToby Isaac x[i2] += xw[0]; x[i2+1] += xw[1]; x[i2+2] += xw[2]; x[i2+3] += xw[3]; 707e48d15efSToby Isaac idiag += 16; 708e48d15efSToby Isaac i2 += 4; 709e48d15efSToby Isaac } 710e48d15efSToby Isaac break; 711e48d15efSToby Isaac case 5: 712e48d15efSToby Isaac for (i=0; i<m; i++) { 713e48d15efSToby Isaac v = aa + 25*ai[i]; 714e48d15efSToby Isaac vi = aj + ai[i]; 715e48d15efSToby Isaac nz = ai[i+1] - ai[i]; 716e48d15efSToby Isaac s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2]; s[3] = b[i2+3]; s[4] = b[i2+4]; 717e48d15efSToby Isaac while (nz--) { 718e48d15efSToby Isaac idx = 5*(*vi++); 719e48d15efSToby Isaac xw[0] = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; xw[3] = x[3+idx]; xw[4] = x[4+idx]; 720e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_5(s,v,xw); 721e48d15efSToby Isaac v += 25; 722e48d15efSToby Isaac } 723e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_5(xw,idiag,s); 724e48d15efSToby Isaac x[i2] += xw[0]; x[i2+1] += xw[1]; x[i2+2] += xw[2]; x[i2+3] += xw[3]; x[i2+4] += xw[4]; 725e48d15efSToby Isaac idiag += 25; 726e48d15efSToby Isaac i2 += 5; 727e48d15efSToby Isaac } 728e48d15efSToby Isaac break; 729e48d15efSToby Isaac case 6: 730e48d15efSToby Isaac for (i=0; i<m; i++) { 731e48d15efSToby Isaac v = aa + 36*ai[i]; 732e48d15efSToby Isaac vi = aj + ai[i]; 733e48d15efSToby Isaac nz = ai[i+1] - ai[i]; 734e48d15efSToby Isaac s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2]; s[3] = b[i2+3]; s[4] = b[i2+4]; s[5] = b[i2+5]; 735e48d15efSToby Isaac while (nz--) { 736e48d15efSToby Isaac idx = 6*(*vi++); 737e48d15efSToby Isaac xw[0] = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; 738e48d15efSToby Isaac xw[3] = x[3+idx]; xw[4] = x[4+idx]; xw[5] = x[5+idx]; 739e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_6(s,v,xw); 740e48d15efSToby Isaac v += 36; 741e48d15efSToby Isaac } 742e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_6(xw,idiag,s); 743e48d15efSToby Isaac x[i2] += xw[0]; x[i2+1] += xw[1]; x[i2+2] += xw[2]; 744e48d15efSToby Isaac x[i2+3] += xw[3]; x[i2+4] += xw[4]; x[i2+5] += xw[5]; 745e48d15efSToby Isaac idiag += 36; 746e48d15efSToby Isaac i2 += 6; 747e48d15efSToby Isaac } 748e48d15efSToby Isaac break; 749e48d15efSToby Isaac case 7: 750e48d15efSToby Isaac for (i=0; i<m; i++) { 751e48d15efSToby Isaac v = aa + 49*ai[i]; 752e48d15efSToby Isaac vi = aj + ai[i]; 753e48d15efSToby Isaac nz = ai[i+1] - ai[i]; 754e48d15efSToby Isaac s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2]; 755e48d15efSToby Isaac s[3] = b[i2+3]; s[4] = b[i2+4]; s[5] = b[i2+5]; s[6] = b[i2+6]; 756e48d15efSToby Isaac while (nz--) { 757e48d15efSToby Isaac idx = 7*(*vi++); 758e48d15efSToby Isaac xw[0] = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; 759e48d15efSToby Isaac xw[3] = x[3+idx]; xw[4] = x[4+idx]; xw[5] = x[5+idx]; xw[6] = x[6+idx]; 760e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_7(s,v,xw); 761e48d15efSToby Isaac v += 49; 762e48d15efSToby Isaac } 763e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_7(xw,idiag,s); 764e48d15efSToby Isaac x[i2] += xw[0]; x[i2+1] += xw[1]; x[i2+2] += xw[2]; 765e48d15efSToby Isaac x[i2+3] += xw[3]; x[i2+4] += xw[4]; x[i2+5] += xw[5]; x[i2+6] += xw[6]; 766e48d15efSToby Isaac idiag += 49; 767e48d15efSToby Isaac i2 += 7; 768e48d15efSToby Isaac } 769e48d15efSToby Isaac break; 770e48d15efSToby Isaac default: 771e48d15efSToby Isaac for (i=0; i<m; i++) { 772e48d15efSToby Isaac v = aa + bs2*ai[i]; 773e48d15efSToby Isaac vi = aj + ai[i]; 774e48d15efSToby Isaac nz = ai[i+1] - ai[i]; 775e48d15efSToby Isaac 7769566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(w,b+i2,bs)); 777e48d15efSToby Isaac /* copy all rows of x that are needed into contiguous space */ 778e48d15efSToby Isaac workt = work; 779e48d15efSToby Isaac for (j=0; j<nz; j++) { 7809566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(workt,x + bs*(*vi++),bs)); 781e48d15efSToby Isaac workt += bs; 782e48d15efSToby Isaac } 783e48d15efSToby Isaac PetscKernel_w_gets_w_minus_Ar_times_v(bs,bs*nz,w,v,work); 784e48d15efSToby Isaac PetscKernel_w_gets_w_plus_Ar_times_v(bs,bs,w,idiag,x+i2); 785e48d15efSToby Isaac 786e48d15efSToby Isaac idiag += bs2; 787e48d15efSToby Isaac i2 += bs; 788e48d15efSToby Isaac } 789e48d15efSToby Isaac break; 790e48d15efSToby Isaac } 7919566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0*bs2*a->nz)); 792e48d15efSToby Isaac } 793e48d15efSToby Isaac if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) { 794e48d15efSToby Isaac idiag = a->idiag+bs2*(a->mbs-1); 795e48d15efSToby Isaac i2 = bs * (m-1); 796e48d15efSToby Isaac switch (bs) { 797e48d15efSToby Isaac case 1: 798e48d15efSToby Isaac for (i=m-1; i>=0; i--) { 799e48d15efSToby Isaac v = aa + ai[i]; 800e48d15efSToby Isaac vi = aj + ai[i]; 801e48d15efSToby Isaac nz = ai[i+1] - ai[i]; 802e48d15efSToby Isaac s[0] = b[i2]; 803e48d15efSToby Isaac for (j=0; j<nz; j++) { 804e48d15efSToby Isaac xw[0] = x[vi[j]]; 805e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_1(s,(v+j),xw); 806e48d15efSToby Isaac } 807e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_1(xw,idiag,s); 808e48d15efSToby Isaac x[i2] += xw[0]; 809e48d15efSToby Isaac idiag -= 1; 810e48d15efSToby Isaac i2 -= 1; 811e48d15efSToby Isaac } 812e48d15efSToby Isaac break; 813e48d15efSToby Isaac case 2: 814e48d15efSToby Isaac for (i=m-1; i>=0; i--) { 815e48d15efSToby Isaac v = aa + 4*ai[i]; 816e48d15efSToby Isaac vi = aj + ai[i]; 817e48d15efSToby Isaac nz = ai[i+1] - ai[i]; 818e48d15efSToby Isaac s[0] = b[i2]; s[1] = b[i2+1]; 819e48d15efSToby Isaac for (j=0; j<nz; j++) { 820e48d15efSToby Isaac idx = 2*vi[j]; 821e48d15efSToby Isaac it = 4*j; 822e48d15efSToby Isaac xw[0] = x[idx]; xw[1] = x[1+idx]; 823e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_2(s,(v+it),xw); 824e48d15efSToby Isaac } 825e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_2(xw,idiag,s); 826e48d15efSToby Isaac x[i2] += xw[0]; x[i2+1] += xw[1]; 827e48d15efSToby Isaac idiag -= 4; 828e48d15efSToby Isaac i2 -= 2; 829e48d15efSToby Isaac } 830e48d15efSToby Isaac break; 831e48d15efSToby Isaac case 3: 832e48d15efSToby Isaac for (i=m-1; i>=0; i--) { 833e48d15efSToby Isaac v = aa + 9*ai[i]; 834e48d15efSToby Isaac vi = aj + ai[i]; 835e48d15efSToby Isaac nz = ai[i+1] - ai[i]; 836e48d15efSToby Isaac s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2]; 837e48d15efSToby Isaac while (nz--) { 838e48d15efSToby Isaac idx = 3*(*vi++); 839e48d15efSToby Isaac xw[0] = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; 840e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_3(s,v,xw); 841e48d15efSToby Isaac v += 9; 842e48d15efSToby Isaac } 843e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_3(xw,idiag,s); 844e48d15efSToby Isaac x[i2] += xw[0]; x[i2+1] += xw[1]; x[i2+2] += xw[2]; 845e48d15efSToby Isaac idiag -= 9; 846e48d15efSToby Isaac i2 -= 3; 847e48d15efSToby Isaac } 848e48d15efSToby Isaac break; 849e48d15efSToby Isaac case 4: 850e48d15efSToby Isaac for (i=m-1; i>=0; i--) { 851e48d15efSToby Isaac v = aa + 16*ai[i]; 852e48d15efSToby Isaac vi = aj + ai[i]; 853e48d15efSToby Isaac nz = ai[i+1] - ai[i]; 854e48d15efSToby Isaac s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2]; s[3] = b[i2+3]; 855e48d15efSToby Isaac while (nz--) { 856e48d15efSToby Isaac idx = 4*(*vi++); 857e48d15efSToby Isaac xw[0] = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; xw[3] = x[3+idx]; 858e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_4(s,v,xw); 859e48d15efSToby Isaac v += 16; 860e48d15efSToby Isaac } 861e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_4(xw,idiag,s); 862e48d15efSToby Isaac x[i2] += xw[0]; x[i2+1] += xw[1]; x[i2+2] += xw[2]; x[i2+3] += xw[3]; 863e48d15efSToby Isaac idiag -= 16; 864e48d15efSToby Isaac i2 -= 4; 865e48d15efSToby Isaac } 866e48d15efSToby Isaac break; 867e48d15efSToby Isaac case 5: 868e48d15efSToby Isaac for (i=m-1; i>=0; i--) { 869e48d15efSToby Isaac v = aa + 25*ai[i]; 870e48d15efSToby Isaac vi = aj + ai[i]; 871e48d15efSToby Isaac nz = ai[i+1] - ai[i]; 872e48d15efSToby Isaac s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2]; s[3] = b[i2+3]; s[4] = b[i2+4]; 873e48d15efSToby Isaac while (nz--) { 874e48d15efSToby Isaac idx = 5*(*vi++); 875e48d15efSToby Isaac xw[0] = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; xw[3] = x[3+idx]; xw[4] = x[4+idx]; 876e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_5(s,v,xw); 877e48d15efSToby Isaac v += 25; 878e48d15efSToby Isaac } 879e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_5(xw,idiag,s); 880e48d15efSToby Isaac x[i2] += xw[0]; x[i2+1] += xw[1]; x[i2+2] += xw[2]; x[i2+3] += xw[3]; x[i2+4] += xw[4]; 881e48d15efSToby Isaac idiag -= 25; 882e48d15efSToby Isaac i2 -= 5; 883e48d15efSToby Isaac } 884e48d15efSToby Isaac break; 885e48d15efSToby Isaac case 6: 886e48d15efSToby Isaac for (i=m-1; i>=0; i--) { 887e48d15efSToby Isaac v = aa + 36*ai[i]; 888e48d15efSToby Isaac vi = aj + ai[i]; 889e48d15efSToby Isaac nz = ai[i+1] - ai[i]; 890e48d15efSToby Isaac s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2]; s[3] = b[i2+3]; s[4] = b[i2+4]; s[5] = b[i2+5]; 891e48d15efSToby Isaac while (nz--) { 892e48d15efSToby Isaac idx = 6*(*vi++); 893e48d15efSToby Isaac xw[0] = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; 894e48d15efSToby Isaac xw[3] = x[3+idx]; xw[4] = x[4+idx]; xw[5] = x[5+idx]; 895e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_6(s,v,xw); 896e48d15efSToby Isaac v += 36; 897e48d15efSToby Isaac } 898e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_6(xw,idiag,s); 899e48d15efSToby Isaac x[i2] += xw[0]; x[i2+1] += xw[1]; x[i2+2] += xw[2]; 900e48d15efSToby Isaac x[i2+3] += xw[3]; x[i2+4] += xw[4]; x[i2+5] += xw[5]; 901e48d15efSToby Isaac idiag -= 36; 902e48d15efSToby Isaac i2 -= 6; 903e48d15efSToby Isaac } 904e48d15efSToby Isaac break; 905e48d15efSToby Isaac case 7: 906e48d15efSToby Isaac for (i=m-1; i>=0; i--) { 907e48d15efSToby Isaac v = aa + 49*ai[i]; 908e48d15efSToby Isaac vi = aj + ai[i]; 909e48d15efSToby Isaac nz = ai[i+1] - ai[i]; 910e48d15efSToby Isaac s[0] = b[i2]; s[1] = b[i2+1]; s[2] = b[i2+2]; 911e48d15efSToby Isaac s[3] = b[i2+3]; s[4] = b[i2+4]; s[5] = b[i2+5]; s[6] = b[i2+6]; 912e48d15efSToby Isaac while (nz--) { 913e48d15efSToby Isaac idx = 7*(*vi++); 914e48d15efSToby Isaac xw[0] = x[idx]; xw[1] = x[1+idx]; xw[2] = x[2+idx]; 915e48d15efSToby Isaac xw[3] = x[3+idx]; xw[4] = x[4+idx]; xw[5] = x[5+idx]; xw[6] = x[6+idx]; 916e48d15efSToby Isaac PetscKernel_v_gets_v_minus_A_times_w_7(s,v,xw); 917e48d15efSToby Isaac v += 49; 918e48d15efSToby Isaac } 919e48d15efSToby Isaac PetscKernel_v_gets_A_times_w_7(xw,idiag,s); 920e48d15efSToby Isaac x[i2] += xw[0]; x[i2+1] += xw[1]; x[i2+2] += xw[2]; 921e48d15efSToby Isaac x[i2+3] += xw[3]; x[i2+4] += xw[4]; x[i2+5] += xw[5]; x[i2+6] += xw[6]; 922e48d15efSToby Isaac idiag -= 49; 923e48d15efSToby Isaac i2 -= 7; 924e48d15efSToby Isaac } 925e48d15efSToby Isaac break; 926e48d15efSToby Isaac default: 927e48d15efSToby Isaac for (i=m-1; i>=0; i--) { 928e48d15efSToby Isaac v = aa + bs2*ai[i]; 929e48d15efSToby Isaac vi = aj + ai[i]; 930e48d15efSToby Isaac nz = ai[i+1] - ai[i]; 931e48d15efSToby Isaac 9329566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(w,b+i2,bs)); 933e48d15efSToby Isaac /* copy all rows of x that are needed into contiguous space */ 934e48d15efSToby Isaac workt = work; 935e48d15efSToby Isaac for (j=0; j<nz; j++) { 9369566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(workt,x + bs*(*vi++),bs)); 937e48d15efSToby Isaac workt += bs; 938e48d15efSToby Isaac } 939e48d15efSToby Isaac PetscKernel_w_gets_w_minus_Ar_times_v(bs,bs*nz,w,v,work); 940e48d15efSToby Isaac PetscKernel_w_gets_w_plus_Ar_times_v(bs,bs,w,idiag,x+i2); 941e48d15efSToby Isaac 942e48d15efSToby Isaac idiag -= bs2; 943e48d15efSToby Isaac i2 -= bs; 944e48d15efSToby Isaac } 945e48d15efSToby Isaac break; 946e48d15efSToby Isaac } 9479566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0*bs2*(a->nz))); 948e48d15efSToby Isaac } 949e48d15efSToby Isaac } 9509566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xx,&x)); 9519566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(bb,&b)); 952de80f912SBarry Smith PetscFunctionReturn(0); 953de80f912SBarry Smith } 954de80f912SBarry Smith 955af674e45SBarry Smith /* 95681824310SBarry Smith Special version for direct calls from Fortran (Used in PETSc-fun3d) 957af674e45SBarry Smith */ 958af674e45SBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS) 959af674e45SBarry Smith #define matsetvaluesblocked4_ MATSETVALUESBLOCKED4 960af674e45SBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 961af674e45SBarry Smith #define matsetvaluesblocked4_ matsetvaluesblocked4 962af674e45SBarry Smith #endif 963af674e45SBarry Smith 9648cc058d9SJed Brown PETSC_EXTERN void matsetvaluesblocked4_(Mat *AA,PetscInt *mm,const PetscInt im[],PetscInt *nn,const PetscInt in[],const PetscScalar v[]) 965af674e45SBarry Smith { 966af674e45SBarry Smith Mat A = *AA; 967af674e45SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 968c1ac3661SBarry Smith PetscInt *rp,k,low,high,t,ii,jj,row,nrow,i,col,l,N,m = *mm,n = *nn; 969c1ac3661SBarry Smith PetscInt *ai =a->i,*ailen=a->ilen; 97017ec6a02SBarry Smith PetscInt *aj =a->j,stepval,lastcol = -1; 971f15d580aSBarry Smith const PetscScalar *value = v; 9724bb09213Spetsc MatScalar *ap,*aa = a->a,*bap; 973af674e45SBarry Smith 974af674e45SBarry Smith PetscFunctionBegin; 975ce94432eSBarry Smith if (A->rmap->bs != 4) SETERRABORT(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Can only be called with a block size of 4"); 976af674e45SBarry Smith stepval = (n-1)*4; 977af674e45SBarry Smith for (k=0; k<m; k++) { /* loop over added rows */ 978af674e45SBarry Smith row = im[k]; 979af674e45SBarry Smith rp = aj + ai[row]; 980af674e45SBarry Smith ap = aa + 16*ai[row]; 981af674e45SBarry Smith nrow = ailen[row]; 982af674e45SBarry Smith low = 0; 98317ec6a02SBarry Smith high = nrow; 984af674e45SBarry Smith for (l=0; l<n; l++) { /* loop over added columns */ 985af674e45SBarry Smith col = in[l]; 986db4deed7SKarl Rupp if (col <= lastcol) low = 0; 987db4deed7SKarl Rupp else high = nrow; 98817ec6a02SBarry Smith lastcol = col; 9891e3347e8SBarry Smith value = v + k*(stepval+4 + l)*4; 990af674e45SBarry Smith while (high-low > 7) { 991af674e45SBarry Smith t = (low+high)/2; 992af674e45SBarry Smith if (rp[t] > col) high = t; 993af674e45SBarry Smith else low = t; 994af674e45SBarry Smith } 995af674e45SBarry Smith for (i=low; i<high; i++) { 996af674e45SBarry Smith if (rp[i] > col) break; 997af674e45SBarry Smith if (rp[i] == col) { 998af674e45SBarry Smith bap = ap + 16*i; 999af674e45SBarry Smith for (ii=0; ii<4; ii++,value+=stepval) { 1000af674e45SBarry Smith for (jj=ii; jj<16; jj+=4) { 1001af674e45SBarry Smith bap[jj] += *value++; 1002af674e45SBarry Smith } 1003af674e45SBarry Smith } 1004af674e45SBarry Smith goto noinsert2; 1005af674e45SBarry Smith } 1006af674e45SBarry Smith } 1007af674e45SBarry Smith N = nrow++ - 1; 100817ec6a02SBarry Smith high++; /* added new column index thus must search to one higher than before */ 1009af674e45SBarry Smith /* shift up all the later entries in this row */ 1010af674e45SBarry Smith for (ii=N; ii>=i; ii--) { 1011af674e45SBarry Smith rp[ii+1] = rp[ii]; 10129566063dSJacob Faibussowitsch PetscCallVoid(PetscArraycpy(ap+16*(ii+1),ap+16*(ii),16)); 1013af674e45SBarry Smith } 1014af674e45SBarry Smith if (N >= i) { 10159566063dSJacob Faibussowitsch PetscCallVoid(PetscArrayzero(ap+16*i,16)); 1016af674e45SBarry Smith } 1017af674e45SBarry Smith rp[i] = col; 1018af674e45SBarry Smith bap = ap + 16*i; 1019af674e45SBarry Smith for (ii=0; ii<4; ii++,value+=stepval) { 1020af674e45SBarry Smith for (jj=ii; jj<16; jj+=4) { 1021af674e45SBarry Smith bap[jj] = *value++; 1022af674e45SBarry Smith } 1023af674e45SBarry Smith } 1024af674e45SBarry Smith noinsert2:; 1025af674e45SBarry Smith low = i; 1026af674e45SBarry Smith } 1027af674e45SBarry Smith ailen[row] = nrow; 1028af674e45SBarry Smith } 1029be1d678aSKris Buschelman PetscFunctionReturnVoid(); 1030af674e45SBarry Smith } 1031af674e45SBarry Smith 1032af674e45SBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS) 1033af674e45SBarry Smith #define matsetvalues4_ MATSETVALUES4 1034af674e45SBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 1035af674e45SBarry Smith #define matsetvalues4_ matsetvalues4 1036af674e45SBarry Smith #endif 1037af674e45SBarry Smith 10388cc058d9SJed Brown PETSC_EXTERN void matsetvalues4_(Mat *AA,PetscInt *mm,PetscInt *im,PetscInt *nn,PetscInt *in,PetscScalar *v) 1039af674e45SBarry Smith { 1040af674e45SBarry Smith Mat A = *AA; 1041af674e45SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 1042580bdb30SBarry Smith PetscInt *rp,k,low,high,t,row,nrow,i,col,l,N,n = *nn,m = *mm; 1043c1ac3661SBarry Smith PetscInt *ai=a->i,*ailen=a->ilen; 1044c1ac3661SBarry Smith PetscInt *aj=a->j,brow,bcol; 104517ec6a02SBarry Smith PetscInt ridx,cidx,lastcol = -1; 1046af674e45SBarry Smith MatScalar *ap,value,*aa=a->a,*bap; 1047af674e45SBarry Smith 1048af674e45SBarry Smith PetscFunctionBegin; 1049af674e45SBarry Smith for (k=0; k<m; k++) { /* loop over added rows */ 1050af674e45SBarry Smith row = im[k]; brow = row/4; 1051af674e45SBarry Smith rp = aj + ai[brow]; 1052af674e45SBarry Smith ap = aa + 16*ai[brow]; 1053af674e45SBarry Smith nrow = ailen[brow]; 1054af674e45SBarry Smith low = 0; 105517ec6a02SBarry Smith high = nrow; 1056af674e45SBarry Smith for (l=0; l<n; l++) { /* loop over added columns */ 1057af674e45SBarry Smith col = in[l]; bcol = col/4; 1058af674e45SBarry Smith ridx = row % 4; cidx = col % 4; 1059af674e45SBarry Smith value = v[l + k*n]; 1060db4deed7SKarl Rupp if (col <= lastcol) low = 0; 1061db4deed7SKarl Rupp else high = nrow; 106217ec6a02SBarry Smith lastcol = col; 1063af674e45SBarry Smith while (high-low > 7) { 1064af674e45SBarry Smith t = (low+high)/2; 1065af674e45SBarry Smith if (rp[t] > bcol) high = t; 1066af674e45SBarry Smith else low = t; 1067af674e45SBarry Smith } 1068af674e45SBarry Smith for (i=low; i<high; i++) { 1069af674e45SBarry Smith if (rp[i] > bcol) break; 1070af674e45SBarry Smith if (rp[i] == bcol) { 1071af674e45SBarry Smith bap = ap + 16*i + 4*cidx + ridx; 1072af674e45SBarry Smith *bap += value; 1073af674e45SBarry Smith goto noinsert1; 1074af674e45SBarry Smith } 1075af674e45SBarry Smith } 1076af674e45SBarry Smith N = nrow++ - 1; 107717ec6a02SBarry Smith high++; /* added new column thus must search to one higher than before */ 1078af674e45SBarry Smith /* shift up all the later entries in this row */ 10799566063dSJacob Faibussowitsch PetscCallVoid(PetscArraymove(rp+i+1,rp+i,N-i+1)); 10809566063dSJacob Faibussowitsch PetscCallVoid(PetscArraymove(ap+16*i+16,ap+16*i,16*(N-i+1))); 10819566063dSJacob Faibussowitsch PetscCallVoid(PetscArrayzero(ap+16*i,16)); 1082af674e45SBarry Smith rp[i] = bcol; 1083af674e45SBarry Smith ap[16*i + 4*cidx + ridx] = value; 1084af674e45SBarry Smith noinsert1:; 1085af674e45SBarry Smith low = i; 1086af674e45SBarry Smith } 1087af674e45SBarry Smith ailen[brow] = nrow; 1088af674e45SBarry Smith } 1089be1d678aSKris Buschelman PetscFunctionReturnVoid(); 1090af674e45SBarry Smith } 1091af674e45SBarry Smith 1092be5855fcSBarry Smith /* 1093be5855fcSBarry Smith Checks for missing diagonals 1094be5855fcSBarry Smith */ 1095ace3abfcSBarry Smith PetscErrorCode MatMissingDiagonal_SeqBAIJ(Mat A,PetscBool *missing,PetscInt *d) 1096be5855fcSBarry Smith { 1097be5855fcSBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 10987734d3b5SMatthew G. Knepley PetscInt *diag,*ii = a->i,i; 1099be5855fcSBarry Smith 1100be5855fcSBarry Smith PetscFunctionBegin; 11019566063dSJacob Faibussowitsch PetscCall(MatMarkDiagonal_SeqBAIJ(A)); 11022af78befSBarry Smith *missing = PETSC_FALSE; 11037734d3b5SMatthew G. Knepley if (A->rmap->n > 0 && !ii) { 11042efa7f71SHong Zhang *missing = PETSC_TRUE; 11052efa7f71SHong Zhang if (d) *d = 0; 11069566063dSJacob Faibussowitsch PetscCall(PetscInfo(A,"Matrix has no entries therefore is missing diagonal\n")); 11072efa7f71SHong Zhang } else { 110801445905SHong Zhang PetscInt n; 110901445905SHong Zhang n = PetscMin(a->mbs, a->nbs); 1110883fce79SBarry Smith diag = a->diag; 111101445905SHong Zhang for (i=0; i<n; i++) { 11127734d3b5SMatthew G. Knepley if (diag[i] >= ii[i+1]) { 11132af78befSBarry Smith *missing = PETSC_TRUE; 11142af78befSBarry Smith if (d) *d = i; 11159566063dSJacob Faibussowitsch PetscCall(PetscInfo(A,"Matrix is missing block diagonal number %" PetscInt_FMT "\n",i)); 1116358d2f5dSShri Abhyankar break; 11172efa7f71SHong Zhang } 1118be5855fcSBarry Smith } 1119be5855fcSBarry Smith } 1120be5855fcSBarry Smith PetscFunctionReturn(0); 1121be5855fcSBarry Smith } 1122be5855fcSBarry Smith 1123dfbe8321SBarry Smith PetscErrorCode MatMarkDiagonal_SeqBAIJ(Mat A) 1124de6a44a3SBarry Smith { 1125de6a44a3SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 112609f38230SBarry Smith PetscInt i,j,m = a->mbs; 1127de6a44a3SBarry Smith 11283a40ed3dSBarry Smith PetscFunctionBegin; 112909f38230SBarry Smith if (!a->diag) { 11309566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m,&a->diag)); 11319566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)A,m*sizeof(PetscInt))); 11324fd072dbSBarry Smith a->free_diag = PETSC_TRUE; 113309f38230SBarry Smith } 11347fc0212eSBarry Smith for (i=0; i<m; i++) { 113509f38230SBarry Smith a->diag[i] = a->i[i+1]; 1136de6a44a3SBarry Smith for (j=a->i[i]; j<a->i[i+1]; j++) { 1137de6a44a3SBarry Smith if (a->j[j] == i) { 113809f38230SBarry Smith a->diag[i] = j; 1139de6a44a3SBarry Smith break; 1140de6a44a3SBarry Smith } 1141de6a44a3SBarry Smith } 1142de6a44a3SBarry Smith } 11433a40ed3dSBarry Smith PetscFunctionReturn(0); 1144de6a44a3SBarry Smith } 11452593348eSBarry Smith 11461a83f524SJed Brown static PetscErrorCode MatGetRowIJ_SeqBAIJ(Mat A,PetscInt oshift,PetscBool symmetric,PetscBool blockcompressed,PetscInt *nn,const PetscInt *inia[],const PetscInt *inja[],PetscBool *done) 11473b2fbd54SBarry Smith { 11483b2fbd54SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 11491a83f524SJed Brown PetscInt i,j,n = a->mbs,nz = a->i[n],*tia,*tja,bs = A->rmap->bs,k,l,cnt; 11501a83f524SJed Brown PetscInt **ia = (PetscInt**)inia,**ja = (PetscInt**)inja; 11513b2fbd54SBarry Smith 11523a40ed3dSBarry Smith PetscFunctionBegin; 11533b2fbd54SBarry Smith *nn = n; 11543a40ed3dSBarry Smith if (!ia) PetscFunctionReturn(0); 11553b2fbd54SBarry Smith if (symmetric) { 11569566063dSJacob Faibussowitsch PetscCall(MatToSymmetricIJ_SeqAIJ(n,a->i,a->j,PETSC_TRUE,0,0,&tia,&tja)); 1157553b3c51SBarry Smith nz = tia[n]; 11583b2fbd54SBarry Smith } else { 11598f7157efSSatish Balay tia = a->i; tja = a->j; 11603b2fbd54SBarry Smith } 11613b2fbd54SBarry Smith 1162ecc77c7aSBarry Smith if (!blockcompressed && bs > 1) { 1163ecc77c7aSBarry Smith (*nn) *= bs; 11648f7157efSSatish Balay /* malloc & create the natural set of indices */ 11659566063dSJacob Faibussowitsch PetscCall(PetscMalloc1((n+1)*bs,ia)); 11669985e31cSBarry Smith if (n) { 11672462f5fdSStefano Zampini (*ia)[0] = oshift; 1168ecc77c7aSBarry Smith for (j=1; j<bs; j++) { 1169ecc77c7aSBarry Smith (*ia)[j] = (tia[1]-tia[0])*bs+(*ia)[j-1]; 1170ecc77c7aSBarry Smith } 11719985e31cSBarry Smith } 1172ecc77c7aSBarry Smith 1173ecc77c7aSBarry Smith for (i=1; i<n; i++) { 1174ecc77c7aSBarry Smith (*ia)[i*bs] = (tia[i]-tia[i-1])*bs + (*ia)[i*bs-1]; 1175ecc77c7aSBarry Smith for (j=1; j<bs; j++) { 1176ecc77c7aSBarry Smith (*ia)[i*bs+j] = (tia[i+1]-tia[i])*bs + (*ia)[i*bs+j-1]; 11778f7157efSSatish Balay } 11788f7157efSSatish Balay } 11799985e31cSBarry Smith if (n) { 1180ecc77c7aSBarry Smith (*ia)[n*bs] = (tia[n]-tia[n-1])*bs + (*ia)[n*bs-1]; 11819985e31cSBarry Smith } 1182ecc77c7aSBarry Smith 11831a83f524SJed Brown if (inja) { 11849566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz*bs*bs,ja)); 11859985e31cSBarry Smith cnt = 0; 11869985e31cSBarry Smith for (i=0; i<n; i++) { 11879985e31cSBarry Smith for (j=0; j<bs; j++) { 11889985e31cSBarry Smith for (k=tia[i]; k<tia[i+1]; k++) { 11899985e31cSBarry Smith for (l=0; l<bs; l++) { 11909985e31cSBarry Smith (*ja)[cnt++] = bs*tja[k] + l; 11919985e31cSBarry Smith } 11929985e31cSBarry Smith } 11939985e31cSBarry Smith } 11949985e31cSBarry Smith } 11959985e31cSBarry Smith } 11969985e31cSBarry Smith 11978f7157efSSatish Balay if (symmetric) { /* deallocate memory allocated in MatToSymmetricIJ_SeqAIJ() */ 11989566063dSJacob Faibussowitsch PetscCall(PetscFree(tia)); 11999566063dSJacob Faibussowitsch PetscCall(PetscFree(tja)); 12008f7157efSSatish Balay } 1201f6d58c54SBarry Smith } else if (oshift == 1) { 1202715a17b5SBarry Smith if (symmetric) { 1203a2ea699eSBarry Smith nz = tia[A->rmap->n/bs]; 1204715a17b5SBarry Smith /* add 1 to i and j indices */ 1205715a17b5SBarry Smith for (i=0; i<A->rmap->n/bs+1; i++) tia[i] = tia[i] + 1; 1206715a17b5SBarry Smith *ia = tia; 1207715a17b5SBarry Smith if (ja) { 1208715a17b5SBarry Smith for (i=0; i<nz; i++) tja[i] = tja[i] + 1; 1209715a17b5SBarry Smith *ja = tja; 1210715a17b5SBarry Smith } 1211715a17b5SBarry Smith } else { 1212a2ea699eSBarry Smith nz = a->i[A->rmap->n/bs]; 1213f6d58c54SBarry Smith /* malloc space and add 1 to i and j indices */ 12149566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(A->rmap->n/bs+1,ia)); 1215f6d58c54SBarry Smith for (i=0; i<A->rmap->n/bs+1; i++) (*ia)[i] = a->i[i] + 1; 1216f6d58c54SBarry Smith if (ja) { 12179566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz,ja)); 1218f6d58c54SBarry Smith for (i=0; i<nz; i++) (*ja)[i] = a->j[i] + 1; 1219f6d58c54SBarry Smith } 1220715a17b5SBarry Smith } 12218f7157efSSatish Balay } else { 12228f7157efSSatish Balay *ia = tia; 1223ecc77c7aSBarry Smith if (ja) *ja = tja; 12248f7157efSSatish Balay } 12253a40ed3dSBarry Smith PetscFunctionReturn(0); 12263b2fbd54SBarry Smith } 12273b2fbd54SBarry Smith 12281a83f524SJed Brown static PetscErrorCode MatRestoreRowIJ_SeqBAIJ(Mat A,PetscInt oshift,PetscBool symmetric,PetscBool blockcompressed,PetscInt *nn,const PetscInt *ia[],const PetscInt *ja[],PetscBool *done) 12293b2fbd54SBarry Smith { 12303a40ed3dSBarry Smith PetscFunctionBegin; 12313a40ed3dSBarry Smith if (!ia) PetscFunctionReturn(0); 1232715a17b5SBarry Smith if ((!blockcompressed && A->rmap->bs > 1) || (symmetric || oshift == 1)) { 12339566063dSJacob Faibussowitsch PetscCall(PetscFree(*ia)); 12349566063dSJacob Faibussowitsch if (ja) PetscCall(PetscFree(*ja)); 12353b2fbd54SBarry Smith } 12363a40ed3dSBarry Smith PetscFunctionReturn(0); 12373b2fbd54SBarry Smith } 12383b2fbd54SBarry Smith 1239dfbe8321SBarry Smith PetscErrorCode MatDestroy_SeqBAIJ(Mat A) 12402d61bbb3SSatish Balay { 12412d61bbb3SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 12422d61bbb3SSatish Balay 1243433994e6SBarry Smith PetscFunctionBegin; 1244aa482453SBarry Smith #if defined(PETSC_USE_LOG) 1245c0aa6a63SJacob Faibussowitsch PetscLogObjectState((PetscObject)A,"Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT ", NZ=%" PetscInt_FMT,A->rmap->N,A->cmap->n,a->nz); 12462d61bbb3SSatish Balay #endif 12479566063dSJacob Faibussowitsch PetscCall(MatSeqXAIJFreeAIJ(A,&a->a,&a->j,&a->i)); 12489566063dSJacob Faibussowitsch PetscCall(ISDestroy(&a->row)); 12499566063dSJacob Faibussowitsch PetscCall(ISDestroy(&a->col)); 12509566063dSJacob Faibussowitsch if (a->free_diag) PetscCall(PetscFree(a->diag)); 12519566063dSJacob Faibussowitsch PetscCall(PetscFree(a->idiag)); 12529566063dSJacob Faibussowitsch if (a->free_imax_ilen) PetscCall(PetscFree2(a->imax,a->ilen)); 12539566063dSJacob Faibussowitsch PetscCall(PetscFree(a->solve_work)); 12549566063dSJacob Faibussowitsch PetscCall(PetscFree(a->mult_work)); 12559566063dSJacob Faibussowitsch PetscCall(PetscFree(a->sor_workt)); 12569566063dSJacob Faibussowitsch PetscCall(PetscFree(a->sor_work)); 12579566063dSJacob Faibussowitsch PetscCall(ISDestroy(&a->icol)); 12589566063dSJacob Faibussowitsch PetscCall(PetscFree(a->saved_values)); 12599566063dSJacob Faibussowitsch PetscCall(PetscFree2(a->compressedrow.i,a->compressedrow.rindex)); 1260c4319e64SHong Zhang 12619566063dSJacob Faibussowitsch PetscCall(MatDestroy(&a->sbaijMat)); 12629566063dSJacob Faibussowitsch PetscCall(MatDestroy(&a->parent)); 12639566063dSJacob Faibussowitsch PetscCall(PetscFree(A->data)); 1264901853e0SKris Buschelman 12659566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)A,NULL)); 12669566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A,"MatSeqBAIJGetArray_C",NULL)); 12679566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A,"MatSeqBAIJRestoreArray_C",NULL)); 12689566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A,"MatStoreValues_C",NULL)); 12699566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A,"MatRetrieveValues_C",NULL)); 12709566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A,"MatSeqBAIJSetColumnIndices_C",NULL)); 12719566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqbaij_seqaij_C",NULL)); 12729566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqbaij_seqsbaij_C",NULL)); 12739566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A,"MatSeqBAIJSetPreallocation_C",NULL)); 12749566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A,"MatSeqBAIJSetPreallocationCSR_C",NULL)); 12759566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqbaij_seqbstrm_C",NULL)); 12769566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A,"MatIsTranspose_C",NULL)); 12777ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE) 12789566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqbaij_hypre_C",NULL)); 12797ea3e4caSstefano_zampini #endif 12809566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqbaij_is_C",NULL)); 12812d61bbb3SSatish Balay PetscFunctionReturn(0); 12822d61bbb3SSatish Balay } 12832d61bbb3SSatish Balay 1284ace3abfcSBarry Smith PetscErrorCode MatSetOption_SeqBAIJ(Mat A,MatOption op,PetscBool flg) 12852d61bbb3SSatish Balay { 12862d61bbb3SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 12872d61bbb3SSatish Balay 12882d61bbb3SSatish Balay PetscFunctionBegin; 1289aa275fccSKris Buschelman switch (op) { 1290aa275fccSKris Buschelman case MAT_ROW_ORIENTED: 12914e0d8c25SBarry Smith a->roworiented = flg; 1292aa275fccSKris Buschelman break; 1293a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 1294a9817697SBarry Smith a->keepnonzeropattern = flg; 1295aa275fccSKris Buschelman break; 1296512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1297512a5fc5SBarry Smith a->nonew = (flg ? 0 : 1); 1298aa275fccSKris Buschelman break; 1299aa275fccSKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 13004e0d8c25SBarry Smith a->nonew = (flg ? -1 : 0); 1301aa275fccSKris Buschelman break; 1302aa275fccSKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 13034e0d8c25SBarry Smith a->nonew = (flg ? -2 : 0); 1304aa275fccSKris Buschelman break; 130528b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 130628b2fa4aSMatthew Knepley a->nounused = (flg ? -1 : 0); 130728b2fa4aSMatthew Knepley break; 13088c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 1309aa275fccSKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 1310aa275fccSKris Buschelman case MAT_USE_HASH_TABLE: 1311071fcb05SBarry Smith case MAT_SORTED_FULL: 13129566063dSJacob Faibussowitsch PetscCall(PetscInfo(A,"Option %s ignored\n",MatOptions[op])); 1313aa275fccSKris Buschelman break; 13145021d80fSJed Brown case MAT_SPD: 131577e54ba9SKris Buschelman case MAT_SYMMETRIC: 131677e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 13179a4540c5SBarry Smith case MAT_HERMITIAN: 13189a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 1319c10200c1SHong Zhang case MAT_SUBMAT_SINGLEIS: 1320672ba085SHong Zhang case MAT_STRUCTURE_ONLY: 13215021d80fSJed Brown /* These options are handled directly by MatSetOption() */ 132277e54ba9SKris Buschelman break; 1323aa275fccSKris Buschelman default: 132498921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %d",op); 13252d61bbb3SSatish Balay } 13262d61bbb3SSatish Balay PetscFunctionReturn(0); 13272d61bbb3SSatish Balay } 13282d61bbb3SSatish Balay 132952768537SHong Zhang /* used for both SeqBAIJ and SeqSBAIJ matrices */ 133052768537SHong Zhang PetscErrorCode MatGetRow_SeqBAIJ_private(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v,PetscInt *ai,PetscInt *aj,PetscScalar *aa) 13312d61bbb3SSatish Balay { 133252768537SHong Zhang PetscInt itmp,i,j,k,M,bn,bp,*idx_i,bs,bs2; 133352768537SHong Zhang MatScalar *aa_i; 133487828ca2SBarry Smith PetscScalar *v_i; 13352d61bbb3SSatish Balay 13362d61bbb3SSatish Balay PetscFunctionBegin; 1337d0f46423SBarry Smith bs = A->rmap->bs; 133852768537SHong Zhang bs2 = bs*bs; 13395f80ce2aSJacob Faibussowitsch PetscCheck(row >= 0 && row < A->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %" PetscInt_FMT " out of range", row); 13402d61bbb3SSatish Balay 13412d61bbb3SSatish Balay bn = row/bs; /* Block number */ 13422d61bbb3SSatish Balay bp = row % bs; /* Block Position */ 13432d61bbb3SSatish Balay M = ai[bn+1] - ai[bn]; 13442d61bbb3SSatish Balay *nz = bs*M; 13452d61bbb3SSatish Balay 13462d61bbb3SSatish Balay if (v) { 1347f4259b30SLisandro Dalcin *v = NULL; 13482d61bbb3SSatish Balay if (*nz) { 13499566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(*nz,v)); 13502d61bbb3SSatish Balay for (i=0; i<M; i++) { /* for each block in the block row */ 13512d61bbb3SSatish Balay v_i = *v + i*bs; 13522d61bbb3SSatish Balay aa_i = aa + bs2*(ai[bn] + i); 135326fbe8dcSKarl Rupp for (j=bp,k=0; j<bs2; j+=bs,k++) v_i[k] = aa_i[j]; 13542d61bbb3SSatish Balay } 13552d61bbb3SSatish Balay } 13562d61bbb3SSatish Balay } 13572d61bbb3SSatish Balay 13582d61bbb3SSatish Balay if (idx) { 1359f4259b30SLisandro Dalcin *idx = NULL; 13602d61bbb3SSatish Balay if (*nz) { 13619566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(*nz,idx)); 13622d61bbb3SSatish Balay for (i=0; i<M; i++) { /* for each block in the block row */ 13632d61bbb3SSatish Balay idx_i = *idx + i*bs; 13642d61bbb3SSatish Balay itmp = bs*aj[ai[bn] + i]; 136526fbe8dcSKarl Rupp for (j=0; j<bs; j++) idx_i[j] = itmp++; 13662d61bbb3SSatish Balay } 13672d61bbb3SSatish Balay } 13682d61bbb3SSatish Balay } 13692d61bbb3SSatish Balay PetscFunctionReturn(0); 13702d61bbb3SSatish Balay } 13712d61bbb3SSatish Balay 137252768537SHong Zhang PetscErrorCode MatGetRow_SeqBAIJ(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 137352768537SHong Zhang { 137452768537SHong Zhang Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 137552768537SHong Zhang 137652768537SHong Zhang PetscFunctionBegin; 13779566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqBAIJ_private(A,row,nz,idx,v,a->i,a->j,a->a)); 137852768537SHong Zhang PetscFunctionReturn(0); 137952768537SHong Zhang } 138052768537SHong Zhang 1381c1ac3661SBarry Smith PetscErrorCode MatRestoreRow_SeqBAIJ(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 13822d61bbb3SSatish Balay { 13832d61bbb3SSatish Balay PetscFunctionBegin; 1384cb4a9cd9SHong Zhang if (nz) *nz = 0; 13859566063dSJacob Faibussowitsch if (idx) PetscCall(PetscFree(*idx)); 13869566063dSJacob Faibussowitsch if (v) PetscCall(PetscFree(*v)); 13872d61bbb3SSatish Balay PetscFunctionReturn(0); 13882d61bbb3SSatish Balay } 13892d61bbb3SSatish Balay 1390fc4dec0aSBarry Smith PetscErrorCode MatTranspose_SeqBAIJ(Mat A,MatReuse reuse,Mat *B) 13912d61bbb3SSatish Balay { 139220e84f26SHong Zhang Mat_SeqBAIJ *a=(Mat_SeqBAIJ*)A->data,*at; 13932d61bbb3SSatish Balay Mat C; 139420e84f26SHong Zhang PetscInt i,j,k,*aj=a->j,*ai=a->i,bs=A->rmap->bs,mbs=a->mbs,nbs=a->nbs,*atfill; 139520e84f26SHong Zhang PetscInt bs2=a->bs2,*ati,*atj,anzj,kr; 139620e84f26SHong Zhang MatScalar *ata,*aa=a->a; 13972d61bbb3SSatish Balay 13982d61bbb3SSatish Balay PetscFunctionBegin; 13999566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(1+nbs,&atfill)); 1400cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 140120e84f26SHong Zhang for (i=0; i<ai[mbs]; i++) atfill[aj[i]] += 1; /* count num of non-zeros in row aj[i] */ 14022d61bbb3SSatish Balay 14039566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&C)); 14049566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C,A->cmap->n,A->rmap->N,A->cmap->n,A->rmap->N)); 14059566063dSJacob Faibussowitsch PetscCall(MatSetType(C,((PetscObject)A)->type_name)); 14069566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(C,bs,0,atfill)); 140720e84f26SHong Zhang 140820e84f26SHong Zhang at = (Mat_SeqBAIJ*)C->data; 140920e84f26SHong Zhang ati = at->i; 141020e84f26SHong Zhang for (i=0; i<nbs; i++) at->ilen[i] = at->imax[i] = ati[i+1] - ati[i]; 1411fc4dec0aSBarry Smith } else { 1412fc4dec0aSBarry Smith C = *B; 141320e84f26SHong Zhang at = (Mat_SeqBAIJ*)C->data; 141420e84f26SHong Zhang ati = at->i; 1415fc4dec0aSBarry Smith } 1416fc4dec0aSBarry Smith 141720e84f26SHong Zhang atj = at->j; 141820e84f26SHong Zhang ata = at->a; 141920e84f26SHong Zhang 142020e84f26SHong Zhang /* Copy ati into atfill so we have locations of the next free space in atj */ 14219566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(atfill,ati,nbs)); 142220e84f26SHong Zhang 142320e84f26SHong Zhang /* Walk through A row-wise and mark nonzero entries of A^T. */ 14242d61bbb3SSatish Balay for (i=0; i<mbs; i++) { 142520e84f26SHong Zhang anzj = ai[i+1] - ai[i]; 142620e84f26SHong Zhang for (j=0; j<anzj; j++) { 142720e84f26SHong Zhang atj[atfill[*aj]] = i; 142820e84f26SHong Zhang for (kr=0; kr<bs; kr++) { 142920e84f26SHong Zhang for (k=0; k<bs; k++) { 143020e84f26SHong Zhang ata[bs2*atfill[*aj]+k*bs+kr] = *aa++; 14312d61bbb3SSatish Balay } 14322d61bbb3SSatish Balay } 143320e84f26SHong Zhang atfill[*aj++] += 1; 143420e84f26SHong Zhang } 143520e84f26SHong Zhang } 14369566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY)); 14379566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY)); 14382d61bbb3SSatish Balay 143920e84f26SHong Zhang /* Clean up temporary space and complete requests. */ 14409566063dSJacob Faibussowitsch PetscCall(PetscFree(atfill)); 144120e84f26SHong Zhang 1442cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) { 14439566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(C,PetscAbs(A->cmap->bs),PetscAbs(A->rmap->bs))); 14442d61bbb3SSatish Balay *B = C; 14452d61bbb3SSatish Balay } else { 14469566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(A,&C)); 14472d61bbb3SSatish Balay } 14482d61bbb3SSatish Balay PetscFunctionReturn(0); 14492d61bbb3SSatish Balay } 14502d61bbb3SSatish Balay 1451453d3561SHong Zhang PetscErrorCode MatIsTranspose_SeqBAIJ(Mat A,Mat B,PetscReal tol,PetscBool *f) 1452453d3561SHong Zhang { 1453453d3561SHong Zhang Mat Btrans; 1454453d3561SHong Zhang 1455453d3561SHong Zhang PetscFunctionBegin; 1456453d3561SHong Zhang *f = PETSC_FALSE; 14579566063dSJacob Faibussowitsch PetscCall(MatTranspose_SeqBAIJ(A,MAT_INITIAL_MATRIX,&Btrans)); 14589566063dSJacob Faibussowitsch PetscCall(MatEqual_SeqBAIJ(B,Btrans,f)); 14599566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Btrans)); 1460453d3561SHong Zhang PetscFunctionReturn(0); 1461453d3561SHong Zhang } 1462453d3561SHong Zhang 1463618cc2edSLisandro Dalcin /* Used for both SeqBAIJ and SeqSBAIJ matrices */ 1464b51a4376SLisandro Dalcin PetscErrorCode MatView_SeqBAIJ_Binary(Mat mat,PetscViewer viewer) 14652593348eSBarry Smith { 1466b51a4376SLisandro Dalcin Mat_SeqBAIJ *A = (Mat_SeqBAIJ*)mat->data; 1467b51a4376SLisandro Dalcin PetscInt header[4],M,N,m,bs,nz,cnt,i,j,k,l; 1468b51a4376SLisandro Dalcin PetscInt *rowlens,*colidxs; 1469b51a4376SLisandro Dalcin PetscScalar *matvals; 14702593348eSBarry Smith 14713a40ed3dSBarry Smith PetscFunctionBegin; 14729566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 14733b2fbd54SBarry Smith 1474b51a4376SLisandro Dalcin M = mat->rmap->N; 1475b51a4376SLisandro Dalcin N = mat->cmap->N; 1476b51a4376SLisandro Dalcin m = mat->rmap->n; 1477b51a4376SLisandro Dalcin bs = mat->rmap->bs; 1478b51a4376SLisandro Dalcin nz = bs*bs*A->nz; 14792593348eSBarry Smith 1480b51a4376SLisandro Dalcin /* write matrix header */ 1481b51a4376SLisandro Dalcin header[0] = MAT_FILE_CLASSID; 1482b51a4376SLisandro Dalcin header[1] = M; header[2] = N; header[3] = nz; 14839566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(viewer,header,4,PETSC_INT)); 14842593348eSBarry Smith 1485b51a4376SLisandro Dalcin /* store row lengths */ 14869566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m,&rowlens)); 1487b51a4376SLisandro Dalcin for (cnt=0, i=0; i<A->mbs; i++) 1488b51a4376SLisandro Dalcin for (j=0; j<bs; j++) 1489b51a4376SLisandro Dalcin rowlens[cnt++] = bs*(A->i[i+1] - A->i[i]); 14909566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(viewer,rowlens,m,PETSC_INT)); 14919566063dSJacob Faibussowitsch PetscCall(PetscFree(rowlens)); 1492b51a4376SLisandro Dalcin 1493b51a4376SLisandro Dalcin /* store column indices */ 14949566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz,&colidxs)); 1495b51a4376SLisandro Dalcin for (cnt=0, i=0; i<A->mbs; i++) 1496b51a4376SLisandro Dalcin for (k=0; k<bs; k++) 1497b51a4376SLisandro Dalcin for (j=A->i[i]; j<A->i[i+1]; j++) 1498b51a4376SLisandro Dalcin for (l=0; l<bs; l++) 1499b51a4376SLisandro Dalcin colidxs[cnt++] = bs*A->j[j] + l; 15005f80ce2aSJacob Faibussowitsch PetscCheck(cnt == nz,PETSC_COMM_SELF,PETSC_ERR_LIB,"Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt_FMT,cnt,nz); 15019566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(viewer,colidxs,nz,PETSC_INT)); 15029566063dSJacob Faibussowitsch PetscCall(PetscFree(colidxs)); 15032593348eSBarry Smith 15042593348eSBarry Smith /* store nonzero values */ 15059566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz,&matvals)); 1506b51a4376SLisandro Dalcin for (cnt=0, i=0; i<A->mbs; i++) 1507b51a4376SLisandro Dalcin for (k=0; k<bs; k++) 1508b51a4376SLisandro Dalcin for (j=A->i[i]; j<A->i[i+1]; j++) 1509b51a4376SLisandro Dalcin for (l=0; l<bs; l++) 1510b51a4376SLisandro Dalcin matvals[cnt++] = A->a[bs*(bs*j + l) + k]; 15115f80ce2aSJacob Faibussowitsch PetscCheck(cnt == nz,PETSC_COMM_SELF,PETSC_ERR_LIB,"Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt_FMT,cnt,nz); 15129566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(viewer,matvals,nz,PETSC_SCALAR)); 15139566063dSJacob Faibussowitsch PetscCall(PetscFree(matvals)); 1514ce6f0cecSBarry Smith 1515b51a4376SLisandro Dalcin /* write block size option to the viewer's .info file */ 15169566063dSJacob Faibussowitsch PetscCall(MatView_Binary_BlockSizes(mat,viewer)); 15173a40ed3dSBarry Smith PetscFunctionReturn(0); 15182593348eSBarry Smith } 15192593348eSBarry Smith 15207dc0baabSHong Zhang static PetscErrorCode MatView_SeqBAIJ_ASCII_structonly(Mat A,PetscViewer viewer) 15217dc0baabSHong Zhang { 15227dc0baabSHong Zhang Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 15237dc0baabSHong Zhang PetscInt i,bs = A->rmap->bs,k; 15247dc0baabSHong Zhang 15257dc0baabSHong Zhang PetscFunctionBegin; 15269566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer,PETSC_FALSE)); 15277dc0baabSHong Zhang for (i=0; i<a->mbs; i++) { 15289566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"row %" PetscInt_FMT "-%" PetscInt_FMT ":",i*bs,i*bs+bs-1)); 15297dc0baabSHong Zhang for (k=a->i[i]; k<a->i[i+1]; k++) { 15309566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT "-%" PetscInt_FMT ") ",bs*a->j[k],bs*a->j[k]+bs-1)); 15317dc0baabSHong Zhang } 15329566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"\n")); 15337dc0baabSHong Zhang } 15349566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer,PETSC_TRUE)); 15357dc0baabSHong Zhang PetscFunctionReturn(0); 15367dc0baabSHong Zhang } 15377dc0baabSHong Zhang 15386849ba73SBarry Smith static PetscErrorCode MatView_SeqBAIJ_ASCII(Mat A,PetscViewer viewer) 15392593348eSBarry Smith { 1540b6490206SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 1541d0f46423SBarry Smith PetscInt i,j,bs = A->rmap->bs,k,l,bs2=a->bs2; 1542f3ef73ceSBarry Smith PetscViewerFormat format; 15432593348eSBarry Smith 15443a40ed3dSBarry Smith PetscFunctionBegin; 15457dc0baabSHong Zhang if (A->structure_only) { 15469566063dSJacob Faibussowitsch PetscCall(MatView_SeqBAIJ_ASCII_structonly(A,viewer)); 15477dc0baabSHong Zhang PetscFunctionReturn(0); 15487dc0baabSHong Zhang } 15497dc0baabSHong Zhang 15509566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer,&format)); 1551456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 15529566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," block size is %" PetscInt_FMT "\n",bs)); 1553fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_MATLAB) { 1554ade3a672SBarry Smith const char *matname; 1555bcd9e38bSBarry Smith Mat aij; 15569566063dSJacob Faibussowitsch PetscCall(MatConvert(A,MATSEQAIJ,MAT_INITIAL_MATRIX,&aij)); 15579566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)A,&matname)); 15589566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)aij,matname)); 15599566063dSJacob Faibussowitsch PetscCall(MatView(aij,viewer)); 15609566063dSJacob Faibussowitsch PetscCall(MatDestroy(&aij)); 156104929863SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 156204929863SHong Zhang PetscFunctionReturn(0); 1563fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_COMMON) { 15649566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer,PETSC_FALSE)); 156544cd7ae7SLois Curfman McInnes for (i=0; i<a->mbs; i++) { 156644cd7ae7SLois Curfman McInnes for (j=0; j<bs; j++) { 15679566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"row %" PetscInt_FMT ":",i*bs+j)); 156844cd7ae7SLois Curfman McInnes for (k=a->i[i]; k<a->i[i+1]; k++) { 156944cd7ae7SLois Curfman McInnes for (l=0; l<bs; l++) { 1570aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 15710e6d2581SBarry Smith if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) > 0.0 && PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) { 15729566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g + %gi) ",bs*a->j[k]+l, 15735f80ce2aSJacob Faibussowitsch (double)PetscRealPart(a->a[bs2*k + l*bs + j]),(double)PetscImaginaryPart(a->a[bs2*k + l*bs + j]))); 15740e6d2581SBarry Smith } else if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) < 0.0 && PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) { 15759566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g - %gi) ",bs*a->j[k]+l, 15765f80ce2aSJacob Faibussowitsch (double)PetscRealPart(a->a[bs2*k + l*bs + j]),-(double)PetscImaginaryPart(a->a[bs2*k + l*bs + j]))); 15770e6d2581SBarry Smith } else if (PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) { 15789566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g) ",bs*a->j[k]+l,(double)PetscRealPart(a->a[bs2*k + l*bs + j]))); 15790ef38995SBarry Smith } 158044cd7ae7SLois Curfman McInnes #else 15810ef38995SBarry Smith if (a->a[bs2*k + l*bs + j] != 0.0) { 15829566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g) ",bs*a->j[k]+l,(double)a->a[bs2*k + l*bs + j])); 15830ef38995SBarry Smith } 158444cd7ae7SLois Curfman McInnes #endif 158544cd7ae7SLois Curfman McInnes } 158644cd7ae7SLois Curfman McInnes } 15879566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"\n")); 158844cd7ae7SLois Curfman McInnes } 158944cd7ae7SLois Curfman McInnes } 15909566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer,PETSC_TRUE)); 15910ef38995SBarry Smith } else { 15929566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer,PETSC_FALSE)); 1593b6490206SBarry Smith for (i=0; i<a->mbs; i++) { 1594b6490206SBarry Smith for (j=0; j<bs; j++) { 15959566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"row %" PetscInt_FMT ":",i*bs+j)); 1596b6490206SBarry Smith for (k=a->i[i]; k<a->i[i+1]; k++) { 1597b6490206SBarry Smith for (l=0; l<bs; l++) { 1598aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 15990e6d2581SBarry Smith if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) > 0.0) { 16009566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g + %g i) ",bs*a->j[k]+l, 16015f80ce2aSJacob Faibussowitsch (double)PetscRealPart(a->a[bs2*k + l*bs + j]),(double)PetscImaginaryPart(a->a[bs2*k + l*bs + j]))); 16020e6d2581SBarry Smith } else if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) < 0.0) { 16039566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g - %g i) ",bs*a->j[k]+l, 16045f80ce2aSJacob Faibussowitsch (double)PetscRealPart(a->a[bs2*k + l*bs + j]),-(double)PetscImaginaryPart(a->a[bs2*k + l*bs + j]))); 16050ef38995SBarry Smith } else { 16069566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g) ",bs*a->j[k]+l,(double)PetscRealPart(a->a[bs2*k + l*bs + j]))); 160788685aaeSLois Curfman McInnes } 160888685aaeSLois Curfman McInnes #else 16099566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," (%" PetscInt_FMT ", %g) ",bs*a->j[k]+l,(double)a->a[bs2*k + l*bs + j])); 161088685aaeSLois Curfman McInnes #endif 16112593348eSBarry Smith } 16122593348eSBarry Smith } 16139566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"\n")); 16142593348eSBarry Smith } 16152593348eSBarry Smith } 16169566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIUseTabs(viewer,PETSC_TRUE)); 1617b6490206SBarry Smith } 16189566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 16193a40ed3dSBarry Smith PetscFunctionReturn(0); 16202593348eSBarry Smith } 16212593348eSBarry Smith 16229804daf3SBarry Smith #include <petscdraw.h> 16236849ba73SBarry Smith static PetscErrorCode MatView_SeqBAIJ_Draw_Zoom(PetscDraw draw,void *Aa) 16243270192aSSatish Balay { 162577ed5343SBarry Smith Mat A = (Mat) Aa; 16263270192aSSatish Balay Mat_SeqBAIJ *a=(Mat_SeqBAIJ*)A->data; 1627d0f46423SBarry Smith PetscInt row,i,j,k,l,mbs=a->mbs,color,bs=A->rmap->bs,bs2=a->bs2; 16280e6d2581SBarry Smith PetscReal xl,yl,xr,yr,x_l,x_r,y_l,y_r; 16293f1db9ecSBarry Smith MatScalar *aa; 1630b0a32e0cSBarry Smith PetscViewer viewer; 1631b3e7f47fSJed Brown PetscViewerFormat format; 16323270192aSSatish Balay 16333a40ed3dSBarry Smith PetscFunctionBegin; 16349566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)A,"Zoomviewer",(PetscObject*)&viewer)); 16359566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer,&format)); 16369566063dSJacob Faibussowitsch PetscCall(PetscDrawGetCoordinates(draw,&xl,&yl,&xr,&yr)); 163777ed5343SBarry Smith 16383270192aSSatish Balay /* loop over matrix elements drawing boxes */ 1639b3e7f47fSJed Brown 1640b3e7f47fSJed Brown if (format != PETSC_VIEWER_DRAW_CONTOUR) { 16415f80ce2aSJacob Faibussowitsch PetscErrorCode ierr; 16429566063dSJacob Faibussowitsch ierr = PetscDrawCollectiveBegin(draw);PetscCall(ierr); 1643383922c3SLisandro Dalcin /* Blue for negative, Cyan for zero and Red for positive */ 1644b0a32e0cSBarry Smith color = PETSC_DRAW_BLUE; 16453270192aSSatish Balay for (i=0,row=0; i<mbs; i++,row+=bs) { 16463270192aSSatish Balay for (j=a->i[i]; j<a->i[i+1]; j++) { 1647d0f46423SBarry Smith y_l = A->rmap->N - row - 1.0; y_r = y_l + 1.0; 16483270192aSSatish Balay x_l = a->j[j]*bs; x_r = x_l + 1.0; 16493270192aSSatish Balay aa = a->a + j*bs2; 16503270192aSSatish Balay for (k=0; k<bs; k++) { 16513270192aSSatish Balay for (l=0; l<bs; l++) { 16520e6d2581SBarry Smith if (PetscRealPart(*aa++) >= 0.) continue; 16539566063dSJacob Faibussowitsch PetscCall(PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color)); 16543270192aSSatish Balay } 16553270192aSSatish Balay } 16563270192aSSatish Balay } 16573270192aSSatish Balay } 1658b0a32e0cSBarry Smith color = PETSC_DRAW_CYAN; 16593270192aSSatish Balay for (i=0,row=0; i<mbs; i++,row+=bs) { 16603270192aSSatish Balay for (j=a->i[i]; j<a->i[i+1]; j++) { 1661d0f46423SBarry Smith y_l = A->rmap->N - row - 1.0; y_r = y_l + 1.0; 16623270192aSSatish Balay x_l = a->j[j]*bs; x_r = x_l + 1.0; 16633270192aSSatish Balay aa = a->a + j*bs2; 16643270192aSSatish Balay for (k=0; k<bs; k++) { 16653270192aSSatish Balay for (l=0; l<bs; l++) { 16660e6d2581SBarry Smith if (PetscRealPart(*aa++) != 0.) continue; 16679566063dSJacob Faibussowitsch PetscCall(PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color)); 16683270192aSSatish Balay } 16693270192aSSatish Balay } 16703270192aSSatish Balay } 16713270192aSSatish Balay } 1672b0a32e0cSBarry Smith color = PETSC_DRAW_RED; 16733270192aSSatish Balay for (i=0,row=0; i<mbs; i++,row+=bs) { 16743270192aSSatish Balay for (j=a->i[i]; j<a->i[i+1]; j++) { 1675d0f46423SBarry Smith y_l = A->rmap->N - row - 1.0; y_r = y_l + 1.0; 16763270192aSSatish Balay x_l = a->j[j]*bs; x_r = x_l + 1.0; 16773270192aSSatish Balay aa = a->a + j*bs2; 16783270192aSSatish Balay for (k=0; k<bs; k++) { 16793270192aSSatish Balay for (l=0; l<bs; l++) { 16800e6d2581SBarry Smith if (PetscRealPart(*aa++) <= 0.) continue; 16819566063dSJacob Faibussowitsch PetscCall(PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color)); 16823270192aSSatish Balay } 16833270192aSSatish Balay } 16843270192aSSatish Balay } 16853270192aSSatish Balay } 16869566063dSJacob Faibussowitsch ierr = PetscDrawCollectiveEnd(draw);PetscCall(ierr); 1687b3e7f47fSJed Brown } else { 1688b3e7f47fSJed Brown /* use contour shading to indicate magnitude of values */ 1689b3e7f47fSJed Brown /* first determine max of all nonzero values */ 1690b05fc000SLisandro Dalcin PetscReal minv = 0.0, maxv = 0.0; 1691b3e7f47fSJed Brown PetscDraw popup; 16925f80ce2aSJacob Faibussowitsch PetscErrorCode ierr; 1693b3e7f47fSJed Brown 1694b3e7f47fSJed Brown for (i=0; i<a->nz*a->bs2; i++) { 1695b3e7f47fSJed Brown if (PetscAbsScalar(a->a[i]) > maxv) maxv = PetscAbsScalar(a->a[i]); 1696b3e7f47fSJed Brown } 1697383922c3SLisandro Dalcin if (minv >= maxv) maxv = minv + PETSC_SMALL; 16989566063dSJacob Faibussowitsch PetscCall(PetscDrawGetPopup(draw,&popup)); 16999566063dSJacob Faibussowitsch PetscCall(PetscDrawScalePopup(popup,0.0,maxv)); 1700383922c3SLisandro Dalcin 17019566063dSJacob Faibussowitsch ierr = PetscDrawCollectiveBegin(draw);PetscCall(ierr); 1702b3e7f47fSJed Brown for (i=0,row=0; i<mbs; i++,row+=bs) { 1703b3e7f47fSJed Brown for (j=a->i[i]; j<a->i[i+1]; j++) { 1704b3e7f47fSJed Brown y_l = A->rmap->N - row - 1.0; y_r = y_l + 1.0; 1705b3e7f47fSJed Brown x_l = a->j[j]*bs; x_r = x_l + 1.0; 1706b3e7f47fSJed Brown aa = a->a + j*bs2; 1707b3e7f47fSJed Brown for (k=0; k<bs; k++) { 1708b3e7f47fSJed Brown for (l=0; l<bs; l++) { 1709383922c3SLisandro Dalcin MatScalar v = *aa++; 1710383922c3SLisandro Dalcin color = PetscDrawRealToColor(PetscAbsScalar(v),minv,maxv); 17119566063dSJacob Faibussowitsch PetscCall(PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color)); 1712b3e7f47fSJed Brown } 1713b3e7f47fSJed Brown } 1714b3e7f47fSJed Brown } 1715b3e7f47fSJed Brown } 17169566063dSJacob Faibussowitsch ierr = PetscDrawCollectiveEnd(draw);PetscCall(ierr); 1717b3e7f47fSJed Brown } 171877ed5343SBarry Smith PetscFunctionReturn(0); 171977ed5343SBarry Smith } 17203270192aSSatish Balay 17216849ba73SBarry Smith static PetscErrorCode MatView_SeqBAIJ_Draw(Mat A,PetscViewer viewer) 172277ed5343SBarry Smith { 17230e6d2581SBarry Smith PetscReal xl,yl,xr,yr,w,h; 1724b0a32e0cSBarry Smith PetscDraw draw; 1725ace3abfcSBarry Smith PetscBool isnull; 17263270192aSSatish Balay 172777ed5343SBarry Smith PetscFunctionBegin; 17289566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer,0,&draw)); 17299566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw,&isnull)); 173045f3bb6eSLisandro Dalcin if (isnull) PetscFunctionReturn(0); 173177ed5343SBarry Smith 1732d0f46423SBarry Smith xr = A->cmap->n; yr = A->rmap->N; h = yr/10.0; w = xr/10.0; 173377ed5343SBarry Smith xr += w; yr += h; xl = -w; yl = -h; 17349566063dSJacob Faibussowitsch PetscCall(PetscDrawSetCoordinates(draw,xl,yl,xr,yr)); 17359566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)A,"Zoomviewer",(PetscObject)viewer)); 17369566063dSJacob Faibussowitsch PetscCall(PetscDrawZoom(draw,MatView_SeqBAIJ_Draw_Zoom,A)); 17379566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)A,"Zoomviewer",NULL)); 17389566063dSJacob Faibussowitsch PetscCall(PetscDrawSave(draw)); 17393a40ed3dSBarry Smith PetscFunctionReturn(0); 17403270192aSSatish Balay } 17413270192aSSatish Balay 1742dfbe8321SBarry Smith PetscErrorCode MatView_SeqBAIJ(Mat A,PetscViewer viewer) 17432593348eSBarry Smith { 1744ace3abfcSBarry Smith PetscBool iascii,isbinary,isdraw; 17452593348eSBarry Smith 17463a40ed3dSBarry Smith PetscFunctionBegin; 17479566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii)); 17489566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary)); 17499566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw)); 175032077d6dSBarry Smith if (iascii) { 17519566063dSJacob Faibussowitsch PetscCall(MatView_SeqBAIJ_ASCII(A,viewer)); 17520f5bd95cSBarry Smith } else if (isbinary) { 17539566063dSJacob Faibussowitsch PetscCall(MatView_SeqBAIJ_Binary(A,viewer)); 17540f5bd95cSBarry Smith } else if (isdraw) { 17559566063dSJacob Faibussowitsch PetscCall(MatView_SeqBAIJ_Draw(A,viewer)); 17565cd90555SBarry Smith } else { 1757a5e6ed63SBarry Smith Mat B; 17589566063dSJacob Faibussowitsch PetscCall(MatConvert(A,MATSEQAIJ,MAT_INITIAL_MATRIX,&B)); 17599566063dSJacob Faibussowitsch PetscCall(MatView(B,viewer)); 17609566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 17612593348eSBarry Smith } 17623a40ed3dSBarry Smith PetscFunctionReturn(0); 17632593348eSBarry Smith } 1764b6490206SBarry Smith 1765c1ac3661SBarry Smith PetscErrorCode MatGetValues_SeqBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],PetscScalar v[]) 1766cd0e1443SSatish Balay { 1767cd0e1443SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 1768c1ac3661SBarry Smith PetscInt *rp,k,low,high,t,row,nrow,i,col,l,*aj = a->j; 1769c1ac3661SBarry Smith PetscInt *ai = a->i,*ailen = a->ilen; 1770d0f46423SBarry Smith PetscInt brow,bcol,ridx,cidx,bs=A->rmap->bs,bs2=a->bs2; 177197e567efSBarry Smith MatScalar *ap,*aa = a->a; 1772cd0e1443SSatish Balay 17733a40ed3dSBarry Smith PetscFunctionBegin; 17742d61bbb3SSatish Balay for (k=0; k<m; k++) { /* loop over rows */ 1775cd0e1443SSatish Balay row = im[k]; brow = row/bs; 177654c59aa7SJacob Faibussowitsch if (row < 0) {v += n; continue;} /* negative row */ 177754c59aa7SJacob Faibussowitsch PetscCheck(row < A->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %" PetscInt_FMT " too large", row); 17782d61bbb3SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; 17792c3acbe9SBarry Smith nrow = ailen[brow]; 17802d61bbb3SSatish Balay for (l=0; l<n; l++) { /* loop over columns */ 178154c59aa7SJacob Faibussowitsch if (in[l] < 0) {v++; continue;} /* negative column */ 178254c59aa7SJacob Faibussowitsch PetscCheck(in[l] < A->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column %" PetscInt_FMT " too large", in[l]); 17832d61bbb3SSatish Balay col = in[l]; 17842d61bbb3SSatish Balay bcol = col/bs; 17852d61bbb3SSatish Balay cidx = col%bs; 17862d61bbb3SSatish Balay ridx = row%bs; 17872d61bbb3SSatish Balay high = nrow; 17882d61bbb3SSatish Balay low = 0; /* assume unsorted */ 17892d61bbb3SSatish Balay while (high-low > 5) { 1790cd0e1443SSatish Balay t = (low+high)/2; 1791cd0e1443SSatish Balay if (rp[t] > bcol) high = t; 1792cd0e1443SSatish Balay else low = t; 1793cd0e1443SSatish Balay } 1794cd0e1443SSatish Balay for (i=low; i<high; i++) { 1795cd0e1443SSatish Balay if (rp[i] > bcol) break; 1796cd0e1443SSatish Balay if (rp[i] == bcol) { 17972d61bbb3SSatish Balay *v++ = ap[bs2*i+bs*cidx+ridx]; 17982d61bbb3SSatish Balay goto finished; 1799cd0e1443SSatish Balay } 1800cd0e1443SSatish Balay } 180197e567efSBarry Smith *v++ = 0.0; 18022d61bbb3SSatish Balay finished:; 1803cd0e1443SSatish Balay } 1804cd0e1443SSatish Balay } 18053a40ed3dSBarry Smith PetscFunctionReturn(0); 1806cd0e1443SSatish Balay } 1807cd0e1443SSatish Balay 1808dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is) 180992c4ed94SBarry Smith { 181092c4ed94SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 1811e2ee6c50SBarry Smith PetscInt *rp,k,low,high,t,ii,jj,row,nrow,i,col,l,rmax,N,lastcol = -1; 1812c1ac3661SBarry Smith PetscInt *imax=a->imax,*ai=a->i,*ailen=a->ilen; 1813d0f46423SBarry Smith PetscInt *aj =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs,stepval; 1814ace3abfcSBarry Smith PetscBool roworiented=a->roworiented; 1815dd6ea824SBarry Smith const PetscScalar *value = v; 18169d243f67SHong Zhang MatScalar *ap=NULL,*aa = a->a,*bap; 181792c4ed94SBarry Smith 18183a40ed3dSBarry Smith PetscFunctionBegin; 18190e324ae4SSatish Balay if (roworiented) { 18200e324ae4SSatish Balay stepval = (n-1)*bs; 18210e324ae4SSatish Balay } else { 18220e324ae4SSatish Balay stepval = (m-1)*bs; 18230e324ae4SSatish Balay } 182492c4ed94SBarry Smith for (k=0; k<m; k++) { /* loop over added rows */ 182592c4ed94SBarry Smith row = im[k]; 18265ef9f2a5SBarry Smith if (row < 0) continue; 18276bdcaf15SBarry Smith PetscCheck(row < a->mbs,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block row index too large %" PetscInt_FMT " max %" PetscInt_FMT,row,a->mbs-1); 182892c4ed94SBarry Smith rp = aj + ai[row]; 18297dc0baabSHong Zhang if (!A->structure_only) ap = aa + bs2*ai[row]; 183092c4ed94SBarry Smith rmax = imax[row]; 183192c4ed94SBarry Smith nrow = ailen[row]; 183292c4ed94SBarry Smith low = 0; 1833c71e6ed7SBarry Smith high = nrow; 183492c4ed94SBarry Smith for (l=0; l<n; l++) { /* loop over added columns */ 18355ef9f2a5SBarry Smith if (in[l] < 0) continue; 18366bdcaf15SBarry Smith PetscCheck(in[l] < a->nbs,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block column index too large %" PetscInt_FMT " max %" PetscInt_FMT,in[l],a->nbs-1); 183792c4ed94SBarry Smith col = in[l]; 18387dc0baabSHong Zhang if (!A->structure_only) { 183992c4ed94SBarry Smith if (roworiented) { 184053ef36baSBarry Smith value = v + (k*(stepval+bs) + l)*bs; 18410e324ae4SSatish Balay } else { 184253ef36baSBarry Smith value = v + (l*(stepval+bs) + k)*bs; 184392c4ed94SBarry Smith } 18447dc0baabSHong Zhang } 184526fbe8dcSKarl Rupp if (col <= lastcol) low = 0; 184626fbe8dcSKarl Rupp else high = nrow; 1847e2ee6c50SBarry Smith lastcol = col; 184892c4ed94SBarry Smith while (high-low > 7) { 184992c4ed94SBarry Smith t = (low+high)/2; 185092c4ed94SBarry Smith if (rp[t] > col) high = t; 185192c4ed94SBarry Smith else low = t; 185292c4ed94SBarry Smith } 185392c4ed94SBarry Smith for (i=low; i<high; i++) { 185492c4ed94SBarry Smith if (rp[i] > col) break; 185592c4ed94SBarry Smith if (rp[i] == col) { 18567dc0baabSHong Zhang if (A->structure_only) goto noinsert2; 18578a84c255SSatish Balay bap = ap + bs2*i; 18580e324ae4SSatish Balay if (roworiented) { 18598a84c255SSatish Balay if (is == ADD_VALUES) { 1860dd9472c6SBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 1861dd9472c6SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 18628a84c255SSatish Balay bap[jj] += *value++; 1863dd9472c6SBarry Smith } 1864dd9472c6SBarry Smith } 18650e324ae4SSatish Balay } else { 1866dd9472c6SBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 1867dd9472c6SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 18680e324ae4SSatish Balay bap[jj] = *value++; 18698a84c255SSatish Balay } 1870dd9472c6SBarry Smith } 1871dd9472c6SBarry Smith } 18720e324ae4SSatish Balay } else { 18730e324ae4SSatish Balay if (is == ADD_VALUES) { 187453ef36baSBarry Smith for (ii=0; ii<bs; ii++,value+=bs+stepval) { 1875dd9472c6SBarry Smith for (jj=0; jj<bs; jj++) { 187653ef36baSBarry Smith bap[jj] += value[jj]; 1877dd9472c6SBarry Smith } 187853ef36baSBarry Smith bap += bs; 1879dd9472c6SBarry Smith } 18800e324ae4SSatish Balay } else { 188153ef36baSBarry Smith for (ii=0; ii<bs; ii++,value+=bs+stepval) { 1882dd9472c6SBarry Smith for (jj=0; jj<bs; jj++) { 188353ef36baSBarry Smith bap[jj] = value[jj]; 18840e324ae4SSatish Balay } 188553ef36baSBarry Smith bap += bs; 18868a84c255SSatish Balay } 1887dd9472c6SBarry Smith } 1888dd9472c6SBarry Smith } 1889f1241b54SBarry Smith goto noinsert2; 189092c4ed94SBarry Smith } 189192c4ed94SBarry Smith } 189289280ab3SLois Curfman McInnes if (nonew == 1) goto noinsert2; 18935f80ce2aSJacob Faibussowitsch PetscCheck(nonew != -1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new blocked index new nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", row, col); 18947dc0baabSHong Zhang if (A->structure_only) { 18957dc0baabSHong Zhang MatSeqXAIJReallocateAIJ_structure_only(A,a->mbs,bs2,nrow,row,col,rmax,ai,aj,rp,imax,nonew,MatScalar); 18967dc0baabSHong Zhang } else { 1897fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 18987dc0baabSHong Zhang } 1899c03d1d03SSatish Balay N = nrow++ - 1; high++; 190092c4ed94SBarry Smith /* shift up all the later entries in this row */ 19019566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp+i+1,rp+i,N-i+1)); 190292c4ed94SBarry Smith rp[i] = col; 19037dc0baabSHong Zhang if (!A->structure_only) { 19049566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap+bs2*(i+1),ap+bs2*i,bs2*(N-i+1))); 19058a84c255SSatish Balay bap = ap + bs2*i; 19060e324ae4SSatish Balay if (roworiented) { 1907dd9472c6SBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 1908dd9472c6SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 19090e324ae4SSatish Balay bap[jj] = *value++; 1910dd9472c6SBarry Smith } 1911dd9472c6SBarry Smith } 19120e324ae4SSatish Balay } else { 1913dd9472c6SBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 1914dd9472c6SBarry Smith for (jj=0; jj<bs; jj++) { 19150e324ae4SSatish Balay *bap++ = *value++; 19160e324ae4SSatish Balay } 1917dd9472c6SBarry Smith } 1918dd9472c6SBarry Smith } 19197dc0baabSHong Zhang } 1920f1241b54SBarry Smith noinsert2:; 192192c4ed94SBarry Smith low = i; 192292c4ed94SBarry Smith } 192392c4ed94SBarry Smith ailen[row] = nrow; 192492c4ed94SBarry Smith } 19253a40ed3dSBarry Smith PetscFunctionReturn(0); 192692c4ed94SBarry Smith } 192726e093fcSHong Zhang 1928dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_SeqBAIJ(Mat A,MatAssemblyType mode) 1929584200bdSSatish Balay { 1930584200bdSSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 1931580bdb30SBarry Smith PetscInt fshift = 0,i,*ai = a->i,*aj = a->j,*imax = a->imax; 1932d0f46423SBarry Smith PetscInt m = A->rmap->N,*ip,N,*ailen = a->ilen; 1933c1ac3661SBarry Smith PetscInt mbs = a->mbs,bs2 = a->bs2,rmax = 0; 19343f1db9ecSBarry Smith MatScalar *aa = a->a,*ap; 19353447b6efSHong Zhang PetscReal ratio=0.6; 1936584200bdSSatish Balay 19373a40ed3dSBarry Smith PetscFunctionBegin; 19383a40ed3dSBarry Smith if (mode == MAT_FLUSH_ASSEMBLY) PetscFunctionReturn(0); 1939584200bdSSatish Balay 194043ee02c3SBarry Smith if (m) rmax = ailen[0]; 1941584200bdSSatish Balay for (i=1; i<mbs; i++) { 1942584200bdSSatish Balay /* move each row back by the amount of empty slots (fshift) before it*/ 1943584200bdSSatish Balay fshift += imax[i-1] - ailen[i-1]; 1944d402145bSBarry Smith rmax = PetscMax(rmax,ailen[i]); 1945584200bdSSatish Balay if (fshift) { 1946580bdb30SBarry Smith ip = aj + ai[i]; 1947580bdb30SBarry Smith ap = aa + bs2*ai[i]; 1948584200bdSSatish Balay N = ailen[i]; 19499566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ip-fshift,ip,N)); 1950672ba085SHong Zhang if (!A->structure_only) { 19519566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap-bs2*fshift,ap,bs2*N)); 1952584200bdSSatish Balay } 1953672ba085SHong Zhang } 1954584200bdSSatish Balay ai[i] = ai[i-1] + ailen[i-1]; 1955584200bdSSatish Balay } 1956584200bdSSatish Balay if (mbs) { 1957584200bdSSatish Balay fshift += imax[mbs-1] - ailen[mbs-1]; 1958584200bdSSatish Balay ai[mbs] = ai[mbs-1] + ailen[mbs-1]; 1959584200bdSSatish Balay } 19607c565772SBarry Smith 1961584200bdSSatish Balay /* reset ilen and imax for each row */ 19627c565772SBarry Smith a->nonzerorowcnt = 0; 1963672ba085SHong Zhang if (A->structure_only) { 19649566063dSJacob Faibussowitsch PetscCall(PetscFree2(a->imax,a->ilen)); 1965672ba085SHong Zhang } else { /* !A->structure_only */ 1966584200bdSSatish Balay for (i=0; i<mbs; i++) { 1967584200bdSSatish Balay ailen[i] = imax[i] = ai[i+1] - ai[i]; 19687c565772SBarry Smith a->nonzerorowcnt += ((ai[i+1] - ai[i]) > 0); 1969584200bdSSatish Balay } 1970672ba085SHong Zhang } 1971a7c10996SSatish Balay a->nz = ai[mbs]; 1972584200bdSSatish Balay 1973584200bdSSatish Balay /* diagonals may have moved, so kill the diagonal pointers */ 1974b01c7715SBarry Smith a->idiagvalid = PETSC_FALSE; 1975584200bdSSatish Balay if (fshift && a->diag) { 19769566063dSJacob Faibussowitsch PetscCall(PetscFree(a->diag)); 19779566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)A,-(mbs+1)*sizeof(PetscInt))); 1978f4259b30SLisandro Dalcin a->diag = NULL; 1979584200bdSSatish Balay } 19805f80ce2aSJacob Faibussowitsch if (fshift) PetscCheck(a->nounused != -1,PETSC_COMM_SELF,PETSC_ERR_PLIB, "Unused space detected in matrix: %" PetscInt_FMT " X %" PetscInt_FMT " block size %" PetscInt_FMT ", %" PetscInt_FMT " unneeded", m, A->cmap->n, A->rmap->bs, fshift*bs2); 19819566063dSJacob Faibussowitsch PetscCall(PetscInfo(A,"Matrix size: %" PetscInt_FMT " X %" PetscInt_FMT ", block size %" PetscInt_FMT "; storage space: %" PetscInt_FMT " unneeded, %" PetscInt_FMT " used\n",m,A->cmap->n,A->rmap->bs,fshift*bs2,a->nz*bs2)); 19829566063dSJacob Faibussowitsch PetscCall(PetscInfo(A,"Number of mallocs during MatSetValues is %" PetscInt_FMT "\n",a->reallocs)); 19839566063dSJacob Faibussowitsch PetscCall(PetscInfo(A,"Most nonzeros blocks in any row is %" PetscInt_FMT "\n",rmax)); 198426fbe8dcSKarl Rupp 19858e58a170SBarry Smith A->info.mallocs += a->reallocs; 1986e2f3b5e9SSatish Balay a->reallocs = 0; 19870e6d2581SBarry Smith A->info.nz_unneeded = (PetscReal)fshift*bs2; 1988647a6520SHong Zhang a->rmax = rmax; 1989cf4441caSHong Zhang 1990672ba085SHong Zhang if (!A->structure_only) { 19919566063dSJacob Faibussowitsch PetscCall(MatCheckCompressedRow(A,a->nonzerorowcnt,&a->compressedrow,a->i,mbs,ratio)); 1992672ba085SHong Zhang } 19933a40ed3dSBarry Smith PetscFunctionReturn(0); 1994584200bdSSatish Balay } 1995584200bdSSatish Balay 1996bea157c4SSatish Balay /* 1997bea157c4SSatish Balay This function returns an array of flags which indicate the locations of contiguous 1998bea157c4SSatish Balay blocks that should be zeroed. for eg: if bs = 3 and is = [0,1,2,3,5,6,7,8,9] 1999a5b23f4aSJose E. Roman then the resulting sizes = [3,1,1,3,1] corresponding to sets [(0,1,2),(3),(5),(6,7,8),(9)] 2000bea157c4SSatish Balay Assume: sizes should be long enough to hold all the values. 2001bea157c4SSatish Balay */ 2002c1ac3661SBarry Smith static PetscErrorCode MatZeroRows_SeqBAIJ_Check_Blocks(PetscInt idx[],PetscInt n,PetscInt bs,PetscInt sizes[], PetscInt *bs_max) 2003d9b7c43dSSatish Balay { 2004c1ac3661SBarry Smith PetscInt i,j,k,row; 2005ace3abfcSBarry Smith PetscBool flg; 20063a40ed3dSBarry Smith 2007433994e6SBarry Smith PetscFunctionBegin; 2008bea157c4SSatish Balay for (i=0,j=0; i<n; j++) { 2009bea157c4SSatish Balay row = idx[i]; 2010a5b23f4aSJose E. Roman if (row%bs!=0) { /* Not the beginning of a block */ 2011bea157c4SSatish Balay sizes[j] = 1; 2012bea157c4SSatish Balay i++; 2013e4fda26cSSatish Balay } else if (i+bs > n) { /* complete block doesn't exist (at idx end) */ 2014bea157c4SSatish Balay sizes[j] = 1; /* Also makes sure atleast 'bs' values exist for next else */ 2015bea157c4SSatish Balay i++; 2016bea157c4SSatish Balay } else { /* Begining of the block, so check if the complete block exists */ 2017bea157c4SSatish Balay flg = PETSC_TRUE; 2018bea157c4SSatish Balay for (k=1; k<bs; k++) { 2019bea157c4SSatish Balay if (row+k != idx[i+k]) { /* break in the block */ 2020bea157c4SSatish Balay flg = PETSC_FALSE; 2021bea157c4SSatish Balay break; 2022d9b7c43dSSatish Balay } 2023bea157c4SSatish Balay } 2024abc0a331SBarry Smith if (flg) { /* No break in the bs */ 2025bea157c4SSatish Balay sizes[j] = bs; 2026bea157c4SSatish Balay i += bs; 2027bea157c4SSatish Balay } else { 2028bea157c4SSatish Balay sizes[j] = 1; 2029bea157c4SSatish Balay i++; 2030bea157c4SSatish Balay } 2031bea157c4SSatish Balay } 2032bea157c4SSatish Balay } 2033bea157c4SSatish Balay *bs_max = j; 20343a40ed3dSBarry Smith PetscFunctionReturn(0); 2035d9b7c43dSSatish Balay } 2036d9b7c43dSSatish Balay 20372b40b63fSBarry Smith PetscErrorCode MatZeroRows_SeqBAIJ(Mat A,PetscInt is_n,const PetscInt is_idx[],PetscScalar diag,Vec x, Vec b) 2038d9b7c43dSSatish Balay { 2039d9b7c43dSSatish Balay Mat_SeqBAIJ *baij=(Mat_SeqBAIJ*)A->data; 2040f4df32b1SMatthew Knepley PetscInt i,j,k,count,*rows; 2041d0f46423SBarry Smith PetscInt bs=A->rmap->bs,bs2=baij->bs2,*sizes,row,bs_max; 204287828ca2SBarry Smith PetscScalar zero = 0.0; 20433f1db9ecSBarry Smith MatScalar *aa; 204497b48c8fSBarry Smith const PetscScalar *xx; 204597b48c8fSBarry Smith PetscScalar *bb; 2046d9b7c43dSSatish Balay 20473a40ed3dSBarry Smith PetscFunctionBegin; 204897b48c8fSBarry Smith /* fix right hand side if needed */ 204997b48c8fSBarry Smith if (x && b) { 20509566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x,&xx)); 20519566063dSJacob Faibussowitsch PetscCall(VecGetArray(b,&bb)); 205297b48c8fSBarry Smith for (i=0; i<is_n; i++) { 205397b48c8fSBarry Smith bb[is_idx[i]] = diag*xx[is_idx[i]]; 205497b48c8fSBarry Smith } 20559566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x,&xx)); 20569566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b,&bb)); 205797b48c8fSBarry Smith } 205897b48c8fSBarry Smith 2059d9b7c43dSSatish Balay /* Make a copy of the IS and sort it */ 2060bea157c4SSatish Balay /* allocate memory for rows,sizes */ 20619566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(is_n,&rows,2*is_n,&sizes)); 2062bea157c4SSatish Balay 2063563b5814SBarry Smith /* copy IS values to rows, and sort them */ 206426fbe8dcSKarl Rupp for (i=0; i<is_n; i++) rows[i] = is_idx[i]; 20659566063dSJacob Faibussowitsch PetscCall(PetscSortInt(is_n,rows)); 206697b48c8fSBarry Smith 2067a9817697SBarry Smith if (baij->keepnonzeropattern) { 206826fbe8dcSKarl Rupp for (i=0; i<is_n; i++) sizes[i] = 1; 2069dffd3267SBarry Smith bs_max = is_n; 2070dffd3267SBarry Smith } else { 20719566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ_Check_Blocks(rows,is_n,bs,sizes,&bs_max)); 2072e56f5c9eSBarry Smith A->nonzerostate++; 2073dffd3267SBarry Smith } 2074bea157c4SSatish Balay 2075bea157c4SSatish Balay for (i=0,j=0; i<bs_max; j+=sizes[i],i++) { 2076bea157c4SSatish Balay row = rows[j]; 20775f80ce2aSJacob Faibussowitsch PetscCheck(row >= 0 && row <= A->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"row %" PetscInt_FMT " out of range",row); 2078bea157c4SSatish Balay count = (baij->i[row/bs +1] - baij->i[row/bs])*bs; 2079b31fbe3bSSatish Balay aa = ((MatScalar*)(baij->a)) + baij->i[row/bs]*bs2 + (row%bs); 2080a9817697SBarry Smith if (sizes[i] == bs && !baij->keepnonzeropattern) { 2081d4a378daSJed Brown if (diag != (PetscScalar)0.0) { 2082bea157c4SSatish Balay if (baij->ilen[row/bs] > 0) { 2083bea157c4SSatish Balay baij->ilen[row/bs] = 1; 2084bea157c4SSatish Balay baij->j[baij->i[row/bs]] = row/bs; 208526fbe8dcSKarl Rupp 20869566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(aa,count*bs)); 2087a07cd24cSSatish Balay } 2088563b5814SBarry Smith /* Now insert all the diagonal values for this bs */ 2089bea157c4SSatish Balay for (k=0; k<bs; k++) { 20909566063dSJacob Faibussowitsch PetscCall((*A->ops->setvalues)(A,1,rows+j+k,1,rows+j+k,&diag,INSERT_VALUES)); 2091bea157c4SSatish Balay } 2092f4df32b1SMatthew Knepley } else { /* (diag == 0.0) */ 2093bea157c4SSatish Balay baij->ilen[row/bs] = 0; 2094f4df32b1SMatthew Knepley } /* end (diag == 0.0) */ 2095bea157c4SSatish Balay } else { /* (sizes[i] != bs) */ 20966bdcaf15SBarry Smith PetscAssert(sizes[i] == 1,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Internal Error. Value should be 1"); 2097bea157c4SSatish Balay for (k=0; k<count; k++) { 2098d9b7c43dSSatish Balay aa[0] = zero; 2099d9b7c43dSSatish Balay aa += bs; 2100d9b7c43dSSatish Balay } 2101d4a378daSJed Brown if (diag != (PetscScalar)0.0) { 21029566063dSJacob Faibussowitsch PetscCall((*A->ops->setvalues)(A,1,rows+j,1,rows+j,&diag,INSERT_VALUES)); 2103d9b7c43dSSatish Balay } 2104d9b7c43dSSatish Balay } 2105bea157c4SSatish Balay } 2106bea157c4SSatish Balay 21079566063dSJacob Faibussowitsch PetscCall(PetscFree2(rows,sizes)); 21089566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd_SeqBAIJ(A,MAT_FINAL_ASSEMBLY)); 21093a40ed3dSBarry Smith PetscFunctionReturn(0); 2110d9b7c43dSSatish Balay } 21111c351548SSatish Balay 211297b48c8fSBarry Smith PetscErrorCode MatZeroRowsColumns_SeqBAIJ(Mat A,PetscInt is_n,const PetscInt is_idx[],PetscScalar diag,Vec x, Vec b) 211397b48c8fSBarry Smith { 211497b48c8fSBarry Smith Mat_SeqBAIJ *baij=(Mat_SeqBAIJ*)A->data; 211597b48c8fSBarry Smith PetscInt i,j,k,count; 211697b48c8fSBarry Smith PetscInt bs =A->rmap->bs,bs2=baij->bs2,row,col; 211797b48c8fSBarry Smith PetscScalar zero = 0.0; 211897b48c8fSBarry Smith MatScalar *aa; 211997b48c8fSBarry Smith const PetscScalar *xx; 212097b48c8fSBarry Smith PetscScalar *bb; 212156777dd2SBarry Smith PetscBool *zeroed,vecs = PETSC_FALSE; 212297b48c8fSBarry Smith 212397b48c8fSBarry Smith PetscFunctionBegin; 212497b48c8fSBarry Smith /* fix right hand side if needed */ 212597b48c8fSBarry Smith if (x && b) { 21269566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x,&xx)); 21279566063dSJacob Faibussowitsch PetscCall(VecGetArray(b,&bb)); 212856777dd2SBarry Smith vecs = PETSC_TRUE; 212997b48c8fSBarry Smith } 213097b48c8fSBarry Smith 213197b48c8fSBarry Smith /* zero the columns */ 21329566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(A->rmap->n,&zeroed)); 213397b48c8fSBarry Smith for (i=0; i<is_n; i++) { 21345f80ce2aSJacob Faibussowitsch PetscCheck(is_idx[i] >= 0 && is_idx[i] < A->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"row %" PetscInt_FMT " out of range",is_idx[i]); 213597b48c8fSBarry Smith zeroed[is_idx[i]] = PETSC_TRUE; 213697b48c8fSBarry Smith } 213797b48c8fSBarry Smith for (i=0; i<A->rmap->N; i++) { 213897b48c8fSBarry Smith if (!zeroed[i]) { 213997b48c8fSBarry Smith row = i/bs; 214097b48c8fSBarry Smith for (j=baij->i[row]; j<baij->i[row+1]; j++) { 214197b48c8fSBarry Smith for (k=0; k<bs; k++) { 214297b48c8fSBarry Smith col = bs*baij->j[j] + k; 214397b48c8fSBarry Smith if (zeroed[col]) { 214497b48c8fSBarry Smith aa = ((MatScalar*)(baij->a)) + j*bs2 + (i%bs) + bs*k; 214556777dd2SBarry Smith if (vecs) bb[i] -= aa[0]*xx[col]; 214697b48c8fSBarry Smith aa[0] = 0.0; 214797b48c8fSBarry Smith } 214897b48c8fSBarry Smith } 214997b48c8fSBarry Smith } 215056777dd2SBarry Smith } else if (vecs) bb[i] = diag*xx[i]; 215197b48c8fSBarry Smith } 21529566063dSJacob Faibussowitsch PetscCall(PetscFree(zeroed)); 215356777dd2SBarry Smith if (vecs) { 21549566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x,&xx)); 21559566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b,&bb)); 215656777dd2SBarry Smith } 215797b48c8fSBarry Smith 215897b48c8fSBarry Smith /* zero the rows */ 215997b48c8fSBarry Smith for (i=0; i<is_n; i++) { 216097b48c8fSBarry Smith row = is_idx[i]; 216197b48c8fSBarry Smith count = (baij->i[row/bs +1] - baij->i[row/bs])*bs; 216297b48c8fSBarry Smith aa = ((MatScalar*)(baij->a)) + baij->i[row/bs]*bs2 + (row%bs); 216397b48c8fSBarry Smith for (k=0; k<count; k++) { 216497b48c8fSBarry Smith aa[0] = zero; 216597b48c8fSBarry Smith aa += bs; 216697b48c8fSBarry Smith } 2167d4a378daSJed Brown if (diag != (PetscScalar)0.0) { 21689566063dSJacob Faibussowitsch PetscCall((*A->ops->setvalues)(A,1,&row,1,&row,&diag,INSERT_VALUES)); 216997b48c8fSBarry Smith } 217097b48c8fSBarry Smith } 21719566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd_SeqBAIJ(A,MAT_FINAL_ASSEMBLY)); 217297b48c8fSBarry Smith PetscFunctionReturn(0); 217397b48c8fSBarry Smith } 217497b48c8fSBarry Smith 2175c1ac3661SBarry Smith PetscErrorCode MatSetValues_SeqBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is) 21762d61bbb3SSatish Balay { 21772d61bbb3SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 2178e2ee6c50SBarry Smith PetscInt *rp,k,low,high,t,ii,row,nrow,i,col,l,rmax,N,lastcol = -1; 2179c1ac3661SBarry Smith PetscInt *imax=a->imax,*ai=a->i,*ailen=a->ilen; 2180d0f46423SBarry Smith PetscInt *aj =a->j,nonew=a->nonew,bs=A->rmap->bs,brow,bcol; 2181c1ac3661SBarry Smith PetscInt ridx,cidx,bs2=a->bs2; 2182ace3abfcSBarry Smith PetscBool roworiented=a->roworiented; 2183d8cdefa3SHong Zhang MatScalar *ap=NULL,value=0.0,*aa=a->a,*bap; 21842d61bbb3SSatish Balay 21852d61bbb3SSatish Balay PetscFunctionBegin; 21862d61bbb3SSatish Balay for (k=0; k<m; k++) { /* loop over added rows */ 2187085a36d4SBarry Smith row = im[k]; 2188085a36d4SBarry Smith brow = row/bs; 21895ef9f2a5SBarry Smith if (row < 0) continue; 21906bdcaf15SBarry Smith PetscCheck(row < A->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT,row,A->rmap->N-1); 21912d61bbb3SSatish Balay rp = aj + ai[brow]; 2192672ba085SHong Zhang if (!A->structure_only) ap = aa + bs2*ai[brow]; 21932d61bbb3SSatish Balay rmax = imax[brow]; 21942d61bbb3SSatish Balay nrow = ailen[brow]; 21952d61bbb3SSatish Balay low = 0; 2196c71e6ed7SBarry Smith high = nrow; 21972d61bbb3SSatish Balay for (l=0; l<n; l++) { /* loop over added columns */ 21985ef9f2a5SBarry Smith if (in[l] < 0) continue; 21996bdcaf15SBarry Smith PetscCheck(in[l] < A->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT,in[l],A->cmap->n-1); 22002d61bbb3SSatish Balay col = in[l]; bcol = col/bs; 22012d61bbb3SSatish Balay ridx = row % bs; cidx = col % bs; 2202672ba085SHong Zhang if (!A->structure_only) { 22032d61bbb3SSatish Balay if (roworiented) { 22045ef9f2a5SBarry Smith value = v[l + k*n]; 22052d61bbb3SSatish Balay } else { 22062d61bbb3SSatish Balay value = v[k + l*m]; 22072d61bbb3SSatish Balay } 2208672ba085SHong Zhang } 22097cd84e04SBarry Smith if (col <= lastcol) low = 0; else high = nrow; 2210e2ee6c50SBarry Smith lastcol = col; 22112d61bbb3SSatish Balay while (high-low > 7) { 22122d61bbb3SSatish Balay t = (low+high)/2; 22132d61bbb3SSatish Balay if (rp[t] > bcol) high = t; 22142d61bbb3SSatish Balay else low = t; 22152d61bbb3SSatish Balay } 22162d61bbb3SSatish Balay for (i=low; i<high; i++) { 22172d61bbb3SSatish Balay if (rp[i] > bcol) break; 22182d61bbb3SSatish Balay if (rp[i] == bcol) { 22192d61bbb3SSatish Balay bap = ap + bs2*i + bs*cidx + ridx; 2220672ba085SHong Zhang if (!A->structure_only) { 22212d61bbb3SSatish Balay if (is == ADD_VALUES) *bap += value; 22222d61bbb3SSatish Balay else *bap = value; 2223672ba085SHong Zhang } 22242d61bbb3SSatish Balay goto noinsert1; 22252d61bbb3SSatish Balay } 22262d61bbb3SSatish Balay } 22272d61bbb3SSatish Balay if (nonew == 1) goto noinsert1; 22285f80ce2aSJacob Faibussowitsch PetscCheck(nonew != -1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", row, col); 2229672ba085SHong Zhang if (A->structure_only) { 2230672ba085SHong Zhang MatSeqXAIJReallocateAIJ_structure_only(A,a->mbs,bs2,nrow,brow,bcol,rmax,ai,aj,rp,imax,nonew,MatScalar); 2231672ba085SHong Zhang } else { 2232fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 2233672ba085SHong Zhang } 2234c03d1d03SSatish Balay N = nrow++ - 1; high++; 22352d61bbb3SSatish Balay /* shift up all the later entries in this row */ 22369566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp+i+1,rp+i,N-i+1)); 22372d61bbb3SSatish Balay rp[i] = bcol; 2238580bdb30SBarry Smith if (!A->structure_only) { 22399566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap+bs2*(i+1),ap+bs2*i,bs2*(N-i+1))); 22409566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap+bs2*i,bs2)); 2241580bdb30SBarry Smith ap[bs2*i + bs*cidx + ridx] = value; 2242580bdb30SBarry Smith } 2243085a36d4SBarry Smith a->nz++; 2244e56f5c9eSBarry Smith A->nonzerostate++; 22452d61bbb3SSatish Balay noinsert1:; 22462d61bbb3SSatish Balay low = i; 22472d61bbb3SSatish Balay } 22482d61bbb3SSatish Balay ailen[brow] = nrow; 22492d61bbb3SSatish Balay } 22502d61bbb3SSatish Balay PetscFunctionReturn(0); 22512d61bbb3SSatish Balay } 22522d61bbb3SSatish Balay 22530481f469SBarry Smith PetscErrorCode MatILUFactor_SeqBAIJ(Mat inA,IS row,IS col,const MatFactorInfo *info) 22542d61bbb3SSatish Balay { 22552d61bbb3SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)inA->data; 22562d61bbb3SSatish Balay Mat outA; 2257ace3abfcSBarry Smith PetscBool row_identity,col_identity; 22582d61bbb3SSatish Balay 22592d61bbb3SSatish Balay PetscFunctionBegin; 22605f80ce2aSJacob Faibussowitsch PetscCheck(info->levels == 0,PETSC_COMM_SELF,PETSC_ERR_SUP,"Only levels = 0 supported for in-place ILU"); 22619566063dSJacob Faibussowitsch PetscCall(ISIdentity(row,&row_identity)); 22629566063dSJacob Faibussowitsch PetscCall(ISIdentity(col,&col_identity)); 22635f80ce2aSJacob Faibussowitsch PetscCheck(row_identity && col_identity,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Row and column permutations must be identity for in-place ILU"); 22642d61bbb3SSatish Balay 22652d61bbb3SSatish Balay outA = inA; 2266d5f3da31SBarry Smith inA->factortype = MAT_FACTOR_LU; 22679566063dSJacob Faibussowitsch PetscCall(PetscFree(inA->solvertype)); 22689566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(MATSOLVERPETSC,&inA->solvertype)); 22692d61bbb3SSatish Balay 22709566063dSJacob Faibussowitsch PetscCall(MatMarkDiagonal_SeqBAIJ(inA)); 2271cf242676SKris Buschelman 22729566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)row)); 22739566063dSJacob Faibussowitsch PetscCall(ISDestroy(&a->row)); 2274c3122656SLisandro Dalcin a->row = row; 22759566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)col)); 22769566063dSJacob Faibussowitsch PetscCall(ISDestroy(&a->col)); 2277c3122656SLisandro Dalcin a->col = col; 2278c38d4ed2SBarry Smith 2279c38d4ed2SBarry Smith /* Create the invert permutation so that it can be used in MatLUFactorNumeric() */ 22809566063dSJacob Faibussowitsch PetscCall(ISDestroy(&a->icol)); 22819566063dSJacob Faibussowitsch PetscCall(ISInvertPermutation(col,PETSC_DECIDE,&a->icol)); 22829566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)inA,(PetscObject)a->icol)); 2283c38d4ed2SBarry Smith 22849566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetNumericFactorization_inplace(inA,(PetscBool)(row_identity && col_identity))); 2285c38d4ed2SBarry Smith if (!a->solve_work) { 22869566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(inA->rmap->N+inA->rmap->bs,&a->solve_work)); 22879566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)inA,(inA->rmap->N+inA->rmap->bs)*sizeof(PetscScalar))); 2288c38d4ed2SBarry Smith } 22899566063dSJacob Faibussowitsch PetscCall(MatLUFactorNumeric(outA,inA,info)); 22902d61bbb3SSatish Balay PetscFunctionReturn(0); 22912d61bbb3SSatish Balay } 2292d9b7c43dSSatish Balay 22937087cfbeSBarry Smith PetscErrorCode MatSeqBAIJSetColumnIndices_SeqBAIJ(Mat mat,PetscInt *indices) 229427a8da17SBarry Smith { 229527a8da17SBarry Smith Mat_SeqBAIJ *baij = (Mat_SeqBAIJ*)mat->data; 2296bdb1c0e1SJed Brown PetscInt i,nz,mbs; 229727a8da17SBarry Smith 229827a8da17SBarry Smith PetscFunctionBegin; 2299b32cb4a7SJed Brown nz = baij->maxnz; 2300bdb1c0e1SJed Brown mbs = baij->mbs; 230127a8da17SBarry Smith for (i=0; i<nz; i++) { 230227a8da17SBarry Smith baij->j[i] = indices[i]; 230327a8da17SBarry Smith } 230427a8da17SBarry Smith baij->nz = nz; 2305bdb1c0e1SJed Brown for (i=0; i<mbs; i++) { 230627a8da17SBarry Smith baij->ilen[i] = baij->imax[i]; 230727a8da17SBarry Smith } 230827a8da17SBarry Smith PetscFunctionReturn(0); 230927a8da17SBarry Smith } 231027a8da17SBarry Smith 231127a8da17SBarry Smith /*@ 231227a8da17SBarry Smith MatSeqBAIJSetColumnIndices - Set the column indices for all the rows 231327a8da17SBarry Smith in the matrix. 231427a8da17SBarry Smith 231527a8da17SBarry Smith Input Parameters: 231627a8da17SBarry Smith + mat - the SeqBAIJ matrix 231727a8da17SBarry Smith - indices - the column indices 231827a8da17SBarry Smith 231915091d37SBarry Smith Level: advanced 232015091d37SBarry Smith 232127a8da17SBarry Smith Notes: 232227a8da17SBarry Smith This can be called if you have precomputed the nonzero structure of the 232327a8da17SBarry Smith matrix and want to provide it to the matrix object to improve the performance 232427a8da17SBarry Smith of the MatSetValues() operation. 232527a8da17SBarry Smith 232627a8da17SBarry Smith You MUST have set the correct numbers of nonzeros per row in the call to 2327d1be2dadSMatthew Knepley MatCreateSeqBAIJ(), and the columns indices MUST be sorted. 232827a8da17SBarry Smith 232927a8da17SBarry Smith MUST be called before any calls to MatSetValues(); 233027a8da17SBarry Smith 233127a8da17SBarry Smith @*/ 23327087cfbeSBarry Smith PetscErrorCode MatSeqBAIJSetColumnIndices(Mat mat,PetscInt *indices) 233327a8da17SBarry Smith { 233427a8da17SBarry Smith PetscFunctionBegin; 23350700a824SBarry Smith PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2336dadcf809SJacob Faibussowitsch PetscValidIntPointer(indices,2); 2337*cac4c232SBarry Smith PetscUseMethod(mat,"MatSeqBAIJSetColumnIndices_C",(Mat,PetscInt*),(mat,indices)); 233827a8da17SBarry Smith PetscFunctionReturn(0); 233927a8da17SBarry Smith } 234027a8da17SBarry Smith 2341985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_SeqBAIJ(Mat A,Vec v,PetscInt idx[]) 2342273d9f13SBarry Smith { 2343273d9f13SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 2344c1ac3661SBarry Smith PetscInt i,j,n,row,bs,*ai,*aj,mbs; 2345273d9f13SBarry Smith PetscReal atmp; 234687828ca2SBarry Smith PetscScalar *x,zero = 0.0; 2347273d9f13SBarry Smith MatScalar *aa; 2348c1ac3661SBarry Smith PetscInt ncols,brow,krow,kcol; 2349273d9f13SBarry Smith 2350273d9f13SBarry Smith PetscFunctionBegin; 23515f80ce2aSJacob Faibussowitsch /* why is this not a macro???????????????????????????????????????????????????????????????? */ 23525f80ce2aSJacob Faibussowitsch PetscCheck(!A->factortype,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 2353d0f46423SBarry Smith bs = A->rmap->bs; 2354273d9f13SBarry Smith aa = a->a; 2355273d9f13SBarry Smith ai = a->i; 2356273d9f13SBarry Smith aj = a->j; 2357273d9f13SBarry Smith mbs = a->mbs; 2358273d9f13SBarry Smith 23599566063dSJacob Faibussowitsch PetscCall(VecSet(v,zero)); 23609566063dSJacob Faibussowitsch PetscCall(VecGetArray(v,&x)); 23619566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(v,&n)); 23625f80ce2aSJacob Faibussowitsch PetscCheck(n == A->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector"); 2363273d9f13SBarry Smith for (i=0; i<mbs; i++) { 2364273d9f13SBarry Smith ncols = ai[1] - ai[0]; ai++; 2365273d9f13SBarry Smith brow = bs*i; 2366273d9f13SBarry Smith for (j=0; j<ncols; j++) { 2367273d9f13SBarry Smith for (kcol=0; kcol<bs; kcol++) { 2368273d9f13SBarry Smith for (krow=0; krow<bs; krow++) { 2369273d9f13SBarry Smith atmp = PetscAbsScalar(*aa);aa++; 2370273d9f13SBarry Smith row = brow + krow; /* row index */ 2371985db425SBarry Smith if (PetscAbsScalar(x[row]) < atmp) {x[row] = atmp; if (idx) idx[row] = bs*(*aj) + kcol;} 2372273d9f13SBarry Smith } 2373273d9f13SBarry Smith } 2374273d9f13SBarry Smith aj++; 2375273d9f13SBarry Smith } 2376273d9f13SBarry Smith } 23779566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v,&x)); 2378273d9f13SBarry Smith PetscFunctionReturn(0); 2379273d9f13SBarry Smith } 2380273d9f13SBarry Smith 23813c896bc6SHong Zhang PetscErrorCode MatCopy_SeqBAIJ(Mat A,Mat B,MatStructure str) 23823c896bc6SHong Zhang { 23833c896bc6SHong Zhang PetscFunctionBegin; 23843c896bc6SHong Zhang /* If the two matrices have the same copy implementation, use fast copy. */ 23853c896bc6SHong Zhang if (str == SAME_NONZERO_PATTERN && (A->ops->copy == B->ops->copy)) { 23863c896bc6SHong Zhang Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 23873c896bc6SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)B->data; 2388d88c0aacSHong Zhang PetscInt ambs=a->mbs,bmbs=b->mbs,abs=A->rmap->bs,bbs=B->rmap->bs,bs2=abs*abs; 23893c896bc6SHong Zhang 23905f80ce2aSJacob Faibussowitsch PetscCheck(a->i[ambs] == b->i[bmbs],PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Number of nonzero blocks in matrices A %" PetscInt_FMT " and B %" PetscInt_FMT " are different",a->i[ambs],b->i[bmbs]); 23915f80ce2aSJacob Faibussowitsch PetscCheck(abs == bbs,PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Block size A %" PetscInt_FMT " and B %" PetscInt_FMT " are different",abs,bbs); 23929566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(b->a,a->a,bs2*a->i[ambs])); 23939566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B)); 23943c896bc6SHong Zhang } else { 23959566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A,B,str)); 23963c896bc6SHong Zhang } 23973c896bc6SHong Zhang PetscFunctionReturn(0); 23983c896bc6SHong Zhang } 23993c896bc6SHong Zhang 24004994cf47SJed Brown PetscErrorCode MatSetUp_SeqBAIJ(Mat A) 2401273d9f13SBarry Smith { 2402273d9f13SBarry Smith PetscFunctionBegin; 24039566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,NULL)); 2404273d9f13SBarry Smith PetscFunctionReturn(0); 2405273d9f13SBarry Smith } 2406273d9f13SBarry Smith 2407cda14afcSprj- static PetscErrorCode MatSeqBAIJGetArray_SeqBAIJ(Mat A,PetscScalar *array[]) 2408f2a5309cSSatish Balay { 2409f2a5309cSSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 24106e111a19SKarl Rupp 2411f2a5309cSSatish Balay PetscFunctionBegin; 2412f2a5309cSSatish Balay *array = a->a; 2413f2a5309cSSatish Balay PetscFunctionReturn(0); 2414f2a5309cSSatish Balay } 2415f2a5309cSSatish Balay 2416cda14afcSprj- static PetscErrorCode MatSeqBAIJRestoreArray_SeqBAIJ(Mat A,PetscScalar *array[]) 2417f2a5309cSSatish Balay { 2418f2a5309cSSatish Balay PetscFunctionBegin; 2419cda14afcSprj- *array = NULL; 2420f2a5309cSSatish Balay PetscFunctionReturn(0); 2421f2a5309cSSatish Balay } 2422f2a5309cSSatish Balay 242352768537SHong Zhang PetscErrorCode MatAXPYGetPreallocation_SeqBAIJ(Mat Y,Mat X,PetscInt *nnz) 242452768537SHong Zhang { 2425b264fe52SHong Zhang PetscInt bs = Y->rmap->bs,mbs = Y->rmap->N/bs; 242652768537SHong Zhang Mat_SeqBAIJ *x = (Mat_SeqBAIJ*)X->data; 242752768537SHong Zhang Mat_SeqBAIJ *y = (Mat_SeqBAIJ*)Y->data; 242852768537SHong Zhang 242952768537SHong Zhang PetscFunctionBegin; 243052768537SHong Zhang /* Set the number of nonzeros in the new matrix */ 24319566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqX_private(mbs,x->i,x->j,y->i,y->j,nnz)); 243252768537SHong Zhang PetscFunctionReturn(0); 243352768537SHong Zhang } 243452768537SHong Zhang 2435f4df32b1SMatthew Knepley PetscErrorCode MatAXPY_SeqBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 243642ee4b1aSHong Zhang { 243742ee4b1aSHong Zhang Mat_SeqBAIJ *x = (Mat_SeqBAIJ*)X->data,*y = (Mat_SeqBAIJ*)Y->data; 243831ce2d13SHong Zhang PetscInt bs=Y->rmap->bs,bs2=bs*bs; 2439e838b9e7SJed Brown PetscBLASInt one=1; 244042ee4b1aSHong Zhang 244142ee4b1aSHong Zhang PetscFunctionBegin; 2442134adf20SPierre Jolivet if (str == UNKNOWN_NONZERO_PATTERN || (PetscDefined(USE_DEBUG) && str == SAME_NONZERO_PATTERN)) { 2443134adf20SPierre Jolivet PetscBool e = x->nz == y->nz && x->mbs == y->mbs && bs == X->rmap->bs ? PETSC_TRUE : PETSC_FALSE; 2444134adf20SPierre Jolivet if (e) { 24459566063dSJacob Faibussowitsch PetscCall(PetscArraycmp(x->i,y->i,x->mbs+1,&e)); 2446134adf20SPierre Jolivet if (e) { 24479566063dSJacob Faibussowitsch PetscCall(PetscArraycmp(x->j,y->j,x->i[x->mbs],&e)); 2448134adf20SPierre Jolivet if (e) str = SAME_NONZERO_PATTERN; 2449134adf20SPierre Jolivet } 2450134adf20SPierre Jolivet } 245154c59aa7SJacob Faibussowitsch if (!e) PetscCheck(str != SAME_NONZERO_PATTERN,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"MatStructure is not SAME_NONZERO_PATTERN"); 2452134adf20SPierre Jolivet } 245342ee4b1aSHong Zhang if (str == SAME_NONZERO_PATTERN) { 2454f4df32b1SMatthew Knepley PetscScalar alpha = a; 2455c5df96a5SBarry Smith PetscBLASInt bnz; 24569566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(x->nz*bs2,&bnz)); 24578b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one)); 24589566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Y)); 2459ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 24609566063dSJacob Faibussowitsch PetscCall(MatAXPY_Basic(Y,a,X,str)); 246142ee4b1aSHong Zhang } else { 246252768537SHong Zhang Mat B; 246352768537SHong Zhang PetscInt *nnz; 246454c59aa7SJacob Faibussowitsch PetscCheck(bs == X->rmap->bs,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrices must have same block size"); 24659566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Y->rmap->N,&nnz)); 24669566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)Y),&B)); 24679566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name)); 24689566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N)); 24699566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(B,Y,Y)); 24709566063dSJacob Faibussowitsch PetscCall(MatSetType(B,(MatType) ((PetscObject)Y)->type_name)); 24719566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqBAIJ(Y,X,nnz)); 24729566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(B,bs,0,nnz)); 24739566063dSJacob Faibussowitsch PetscCall(MatAXPY_BasicWithPreallocation(B,Y,a,X,str)); 24749566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(Y,&B)); 24759566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz)); 247642ee4b1aSHong Zhang } 247742ee4b1aSHong Zhang PetscFunctionReturn(0); 247842ee4b1aSHong Zhang } 247942ee4b1aSHong Zhang 24802726fb6dSPierre Jolivet PETSC_INTERN PetscErrorCode MatConjugate_SeqBAIJ(Mat A) 24812726fb6dSPierre Jolivet { 24822726fb6dSPierre Jolivet #if defined(PETSC_USE_COMPLEX) 24832726fb6dSPierre Jolivet Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 24842726fb6dSPierre Jolivet PetscInt i,nz = a->bs2*a->i[a->mbs]; 24852726fb6dSPierre Jolivet MatScalar *aa = a->a; 24862726fb6dSPierre Jolivet 24872726fb6dSPierre Jolivet PetscFunctionBegin; 24882726fb6dSPierre Jolivet for (i=0; i<nz; i++) aa[i] = PetscConj(aa[i]); 24892726fb6dSPierre Jolivet #else 24902726fb6dSPierre Jolivet PetscFunctionBegin; 24912726fb6dSPierre Jolivet #endif 24922726fb6dSPierre Jolivet PetscFunctionReturn(0); 24932726fb6dSPierre Jolivet } 24942726fb6dSPierre Jolivet 249599cafbc1SBarry Smith PetscErrorCode MatRealPart_SeqBAIJ(Mat A) 249699cafbc1SBarry Smith { 249799cafbc1SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 249899cafbc1SBarry Smith PetscInt i,nz = a->bs2*a->i[a->mbs]; 2499dd6ea824SBarry Smith MatScalar *aa = a->a; 250099cafbc1SBarry Smith 250199cafbc1SBarry Smith PetscFunctionBegin; 250299cafbc1SBarry Smith for (i=0; i<nz; i++) aa[i] = PetscRealPart(aa[i]); 250399cafbc1SBarry Smith PetscFunctionReturn(0); 250499cafbc1SBarry Smith } 250599cafbc1SBarry Smith 250699cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_SeqBAIJ(Mat A) 250799cafbc1SBarry Smith { 250899cafbc1SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 250999cafbc1SBarry Smith PetscInt i,nz = a->bs2*a->i[a->mbs]; 2510dd6ea824SBarry Smith MatScalar *aa = a->a; 251199cafbc1SBarry Smith 251299cafbc1SBarry Smith PetscFunctionBegin; 251399cafbc1SBarry Smith for (i=0; i<nz; i++) aa[i] = PetscImaginaryPart(aa[i]); 251499cafbc1SBarry Smith PetscFunctionReturn(0); 251599cafbc1SBarry Smith } 251699cafbc1SBarry Smith 25173acb8795SBarry Smith /* 25182479783cSJose E. Roman Code almost identical to MatGetColumnIJ_SeqAIJ() should share common code 25193acb8795SBarry Smith */ 25201a83f524SJed Brown PetscErrorCode MatGetColumnIJ_SeqBAIJ(Mat A,PetscInt oshift,PetscBool symmetric,PetscBool inodecompressed,PetscInt *nn,const PetscInt *ia[],const PetscInt *ja[],PetscBool *done) 25213acb8795SBarry Smith { 25223acb8795SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 25233acb8795SBarry Smith PetscInt bs = A->rmap->bs,i,*collengths,*cia,*cja,n = A->cmap->n/bs,m = A->rmap->n/bs; 25243acb8795SBarry Smith PetscInt nz = a->i[m],row,*jj,mr,col; 25253acb8795SBarry Smith 25263acb8795SBarry Smith PetscFunctionBegin; 25273acb8795SBarry Smith *nn = n; 25283acb8795SBarry Smith if (!ia) PetscFunctionReturn(0); 25295f80ce2aSJacob Faibussowitsch PetscCheck(!symmetric,PETSC_COMM_SELF,PETSC_ERR_SUP,"Not for BAIJ matrices"); 2530e7e72b3dSBarry Smith else { 25319566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(n,&collengths)); 25329566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n+1,&cia)); 25339566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz,&cja)); 25343acb8795SBarry Smith jj = a->j; 25353acb8795SBarry Smith for (i=0; i<nz; i++) { 25363acb8795SBarry Smith collengths[jj[i]]++; 25373acb8795SBarry Smith } 25383acb8795SBarry Smith cia[0] = oshift; 25393acb8795SBarry Smith for (i=0; i<n; i++) { 25403acb8795SBarry Smith cia[i+1] = cia[i] + collengths[i]; 25413acb8795SBarry Smith } 25429566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(collengths,n)); 25433acb8795SBarry Smith jj = a->j; 25443acb8795SBarry Smith for (row=0; row<m; row++) { 25453acb8795SBarry Smith mr = a->i[row+1] - a->i[row]; 25463acb8795SBarry Smith for (i=0; i<mr; i++) { 25473acb8795SBarry Smith col = *jj++; 254826fbe8dcSKarl Rupp 25493acb8795SBarry Smith cja[cia[col] + collengths[col]++ - oshift] = row + oshift; 25503acb8795SBarry Smith } 25513acb8795SBarry Smith } 25529566063dSJacob Faibussowitsch PetscCall(PetscFree(collengths)); 25533acb8795SBarry Smith *ia = cia; *ja = cja; 25543acb8795SBarry Smith } 25553acb8795SBarry Smith PetscFunctionReturn(0); 25563acb8795SBarry Smith } 25573acb8795SBarry Smith 25581a83f524SJed Brown PetscErrorCode MatRestoreColumnIJ_SeqBAIJ(Mat A,PetscInt oshift,PetscBool symmetric,PetscBool inodecompressed,PetscInt *n,const PetscInt *ia[],const PetscInt *ja[],PetscBool *done) 25593acb8795SBarry Smith { 25603acb8795SBarry Smith PetscFunctionBegin; 25613acb8795SBarry Smith if (!ia) PetscFunctionReturn(0); 25629566063dSJacob Faibussowitsch PetscCall(PetscFree(*ia)); 25639566063dSJacob Faibussowitsch PetscCall(PetscFree(*ja)); 25643acb8795SBarry Smith PetscFunctionReturn(0); 25653acb8795SBarry Smith } 25663acb8795SBarry Smith 2567525d23c0SHong Zhang /* 2568525d23c0SHong Zhang MatGetColumnIJ_SeqBAIJ_Color() and MatRestoreColumnIJ_SeqBAIJ_Color() are customized from 2569525d23c0SHong Zhang MatGetColumnIJ_SeqBAIJ() and MatRestoreColumnIJ_SeqBAIJ() by adding an output 2570040ebd07SHong Zhang spidx[], index of a->a, to be used in MatTransposeColoringCreate() and MatFDColoringCreate() 2571525d23c0SHong Zhang */ 2572525d23c0SHong Zhang PetscErrorCode MatGetColumnIJ_SeqBAIJ_Color(Mat A,PetscInt oshift,PetscBool symmetric,PetscBool inodecompressed,PetscInt *nn,const PetscInt *ia[],const PetscInt *ja[],PetscInt *spidx[],PetscBool *done) 2573f6d58c54SBarry Smith { 2574525d23c0SHong Zhang Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 2575c0349474SHong Zhang PetscInt i,*collengths,*cia,*cja,n=a->nbs,m=a->mbs; 2576525d23c0SHong Zhang PetscInt nz = a->i[m],row,*jj,mr,col; 2577525d23c0SHong Zhang PetscInt *cspidx; 2578f6d58c54SBarry Smith 2579f6d58c54SBarry Smith PetscFunctionBegin; 2580525d23c0SHong Zhang *nn = n; 2581525d23c0SHong Zhang if (!ia) PetscFunctionReturn(0); 2582f6d58c54SBarry Smith 25839566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(n,&collengths)); 25849566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n+1,&cia)); 25859566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz,&cja)); 25869566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz,&cspidx)); 2587525d23c0SHong Zhang jj = a->j; 2588525d23c0SHong Zhang for (i=0; i<nz; i++) { 2589525d23c0SHong Zhang collengths[jj[i]]++; 2590f6d58c54SBarry Smith } 2591525d23c0SHong Zhang cia[0] = oshift; 2592525d23c0SHong Zhang for (i=0; i<n; i++) { 2593525d23c0SHong Zhang cia[i+1] = cia[i] + collengths[i]; 2594525d23c0SHong Zhang } 25959566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(collengths,n)); 2596525d23c0SHong Zhang jj = a->j; 2597525d23c0SHong Zhang for (row=0; row<m; row++) { 2598525d23c0SHong Zhang mr = a->i[row+1] - a->i[row]; 2599525d23c0SHong Zhang for (i=0; i<mr; i++) { 2600525d23c0SHong Zhang col = *jj++; 2601525d23c0SHong Zhang cspidx[cia[col] + collengths[col] - oshift] = a->i[row] + i; /* index of a->j */ 2602525d23c0SHong Zhang cja[cia[col] + collengths[col]++ - oshift] = row + oshift; 2603525d23c0SHong Zhang } 2604525d23c0SHong Zhang } 26059566063dSJacob Faibussowitsch PetscCall(PetscFree(collengths)); 2606071fcb05SBarry Smith *ia = cia; 2607071fcb05SBarry Smith *ja = cja; 2608525d23c0SHong Zhang *spidx = cspidx; 2609525d23c0SHong Zhang PetscFunctionReturn(0); 2610f6d58c54SBarry Smith } 2611f6d58c54SBarry Smith 2612525d23c0SHong Zhang PetscErrorCode MatRestoreColumnIJ_SeqBAIJ_Color(Mat A,PetscInt oshift,PetscBool symmetric,PetscBool inodecompressed,PetscInt *n,const PetscInt *ia[],const PetscInt *ja[],PetscInt *spidx[],PetscBool *done) 2613525d23c0SHong Zhang { 2614525d23c0SHong Zhang PetscFunctionBegin; 26159566063dSJacob Faibussowitsch PetscCall(MatRestoreColumnIJ_SeqBAIJ(A,oshift,symmetric,inodecompressed,n,ia,ja,done)); 26169566063dSJacob Faibussowitsch PetscCall(PetscFree(*spidx)); 2617f6d58c54SBarry Smith PetscFunctionReturn(0); 2618f6d58c54SBarry Smith } 261999cafbc1SBarry Smith 26207d68702bSBarry Smith PetscErrorCode MatShift_SeqBAIJ(Mat Y,PetscScalar a) 26217d68702bSBarry Smith { 26227d68702bSBarry Smith Mat_SeqBAIJ *aij = (Mat_SeqBAIJ*)Y->data; 26237d68702bSBarry Smith 26247d68702bSBarry Smith PetscFunctionBegin; 26256f33a894SBarry Smith if (!Y->preallocated || !aij->nz) { 26269566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(Y,Y->rmap->bs,1,NULL)); 26277d68702bSBarry Smith } 26289566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y,a)); 26297d68702bSBarry Smith PetscFunctionReturn(0); 26307d68702bSBarry Smith } 26317d68702bSBarry Smith 26322593348eSBarry Smith /* -------------------------------------------------------------------*/ 26333964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_SeqBAIJ, 2634cc2dc46cSBarry Smith MatGetRow_SeqBAIJ, 2635cc2dc46cSBarry Smith MatRestoreRow_SeqBAIJ, 2636cc2dc46cSBarry Smith MatMult_SeqBAIJ_N, 263797304618SKris Buschelman /* 4*/ MatMultAdd_SeqBAIJ_N, 26387c922b88SBarry Smith MatMultTranspose_SeqBAIJ, 26397c922b88SBarry Smith MatMultTransposeAdd_SeqBAIJ, 2640f4259b30SLisandro Dalcin NULL, 2641f4259b30SLisandro Dalcin NULL, 2642f4259b30SLisandro Dalcin NULL, 2643f4259b30SLisandro Dalcin /* 10*/ NULL, 2644cc2dc46cSBarry Smith MatLUFactor_SeqBAIJ, 2645f4259b30SLisandro Dalcin NULL, 2646f4259b30SLisandro Dalcin NULL, 2647f2501298SSatish Balay MatTranspose_SeqBAIJ, 264897304618SKris Buschelman /* 15*/ MatGetInfo_SeqBAIJ, 2649cc2dc46cSBarry Smith MatEqual_SeqBAIJ, 2650cc2dc46cSBarry Smith MatGetDiagonal_SeqBAIJ, 2651cc2dc46cSBarry Smith MatDiagonalScale_SeqBAIJ, 2652cc2dc46cSBarry Smith MatNorm_SeqBAIJ, 2653f4259b30SLisandro Dalcin /* 20*/ NULL, 2654cc2dc46cSBarry Smith MatAssemblyEnd_SeqBAIJ, 2655cc2dc46cSBarry Smith MatSetOption_SeqBAIJ, 2656cc2dc46cSBarry Smith MatZeroEntries_SeqBAIJ, 2657d519adbfSMatthew Knepley /* 24*/ MatZeroRows_SeqBAIJ, 2658f4259b30SLisandro Dalcin NULL, 2659f4259b30SLisandro Dalcin NULL, 2660f4259b30SLisandro Dalcin NULL, 2661f4259b30SLisandro Dalcin NULL, 26624994cf47SJed Brown /* 29*/ MatSetUp_SeqBAIJ, 2663f4259b30SLisandro Dalcin NULL, 2664f4259b30SLisandro Dalcin NULL, 2665f4259b30SLisandro Dalcin NULL, 2666f4259b30SLisandro Dalcin NULL, 2667d519adbfSMatthew Knepley /* 34*/ MatDuplicate_SeqBAIJ, 2668f4259b30SLisandro Dalcin NULL, 2669f4259b30SLisandro Dalcin NULL, 2670cc2dc46cSBarry Smith MatILUFactor_SeqBAIJ, 2671f4259b30SLisandro Dalcin NULL, 2672d519adbfSMatthew Knepley /* 39*/ MatAXPY_SeqBAIJ, 26737dae84e0SHong Zhang MatCreateSubMatrices_SeqBAIJ, 2674cc2dc46cSBarry Smith MatIncreaseOverlap_SeqBAIJ, 2675cc2dc46cSBarry Smith MatGetValues_SeqBAIJ, 26763c896bc6SHong Zhang MatCopy_SeqBAIJ, 2677f4259b30SLisandro Dalcin /* 44*/ NULL, 2678cc2dc46cSBarry Smith MatScale_SeqBAIJ, 26797d68702bSBarry Smith MatShift_SeqBAIJ, 2680f4259b30SLisandro Dalcin NULL, 268197b48c8fSBarry Smith MatZeroRowsColumns_SeqBAIJ, 2682f4259b30SLisandro Dalcin /* 49*/ NULL, 26833b2fbd54SBarry Smith MatGetRowIJ_SeqBAIJ, 268492c4ed94SBarry Smith MatRestoreRowIJ_SeqBAIJ, 26853acb8795SBarry Smith MatGetColumnIJ_SeqBAIJ, 26863acb8795SBarry Smith MatRestoreColumnIJ_SeqBAIJ, 268793dfae19SHong Zhang /* 54*/ MatFDColoringCreate_SeqXAIJ, 2688f4259b30SLisandro Dalcin NULL, 2689f4259b30SLisandro Dalcin NULL, 2690090001bdSToby Isaac NULL, 2691d3825aa8SBarry Smith MatSetValuesBlocked_SeqBAIJ, 26927dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_SeqBAIJ, 2693b9b97703SBarry Smith MatDestroy_SeqBAIJ, 2694b9b97703SBarry Smith MatView_SeqBAIJ, 2695f4259b30SLisandro Dalcin NULL, 2696f4259b30SLisandro Dalcin NULL, 2697f4259b30SLisandro Dalcin /* 64*/ NULL, 2698f4259b30SLisandro Dalcin NULL, 2699f4259b30SLisandro Dalcin NULL, 2700f4259b30SLisandro Dalcin NULL, 2701f4259b30SLisandro Dalcin NULL, 2702d519adbfSMatthew Knepley /* 69*/ MatGetRowMaxAbs_SeqBAIJ, 2703f4259b30SLisandro Dalcin NULL, 2704c87e5d42SMatthew Knepley MatConvert_Basic, 2705f4259b30SLisandro Dalcin NULL, 2706f4259b30SLisandro Dalcin NULL, 2707f4259b30SLisandro Dalcin /* 74*/ NULL, 2708f6d58c54SBarry Smith MatFDColoringApply_BAIJ, 2709f4259b30SLisandro Dalcin NULL, 2710f4259b30SLisandro Dalcin NULL, 2711f4259b30SLisandro Dalcin NULL, 2712f4259b30SLisandro Dalcin /* 79*/ NULL, 2713f4259b30SLisandro Dalcin NULL, 2714f4259b30SLisandro Dalcin NULL, 2715f4259b30SLisandro Dalcin NULL, 27165bba2384SShri Abhyankar MatLoad_SeqBAIJ, 2717f4259b30SLisandro Dalcin /* 84*/ NULL, 2718f4259b30SLisandro Dalcin NULL, 2719f4259b30SLisandro Dalcin NULL, 2720f4259b30SLisandro Dalcin NULL, 2721f4259b30SLisandro Dalcin NULL, 2722f4259b30SLisandro Dalcin /* 89*/ NULL, 2723f4259b30SLisandro Dalcin NULL, 2724f4259b30SLisandro Dalcin NULL, 2725f4259b30SLisandro Dalcin NULL, 2726f4259b30SLisandro Dalcin NULL, 2727f4259b30SLisandro Dalcin /* 94*/ NULL, 2728f4259b30SLisandro Dalcin NULL, 2729f4259b30SLisandro Dalcin NULL, 2730f4259b30SLisandro Dalcin NULL, 2731f4259b30SLisandro Dalcin NULL, 2732f4259b30SLisandro Dalcin /* 99*/ NULL, 2733f4259b30SLisandro Dalcin NULL, 2734f4259b30SLisandro Dalcin NULL, 27352726fb6dSPierre Jolivet MatConjugate_SeqBAIJ, 2736f4259b30SLisandro Dalcin NULL, 2737f4259b30SLisandro Dalcin /*104*/ NULL, 273899cafbc1SBarry Smith MatRealPart_SeqBAIJ, 27392af78befSBarry Smith MatImaginaryPart_SeqBAIJ, 2740f4259b30SLisandro Dalcin NULL, 2741f4259b30SLisandro Dalcin NULL, 2742f4259b30SLisandro Dalcin /*109*/ NULL, 2743f4259b30SLisandro Dalcin NULL, 2744f4259b30SLisandro Dalcin NULL, 2745f4259b30SLisandro Dalcin NULL, 2746547795f9SHong Zhang MatMissingDiagonal_SeqBAIJ, 2747f4259b30SLisandro Dalcin /*114*/ NULL, 2748f4259b30SLisandro Dalcin NULL, 2749f4259b30SLisandro Dalcin NULL, 2750f4259b30SLisandro Dalcin NULL, 2751f4259b30SLisandro Dalcin NULL, 2752f4259b30SLisandro Dalcin /*119*/ NULL, 2753f4259b30SLisandro Dalcin NULL, 2754547795f9SHong Zhang MatMultHermitianTranspose_SeqBAIJ, 2755d6037b41SHong Zhang MatMultHermitianTransposeAdd_SeqBAIJ, 2756f4259b30SLisandro Dalcin NULL, 2757f4259b30SLisandro Dalcin /*124*/ NULL, 2758857cbf51SRichard Tran Mills MatGetColumnReductions_SeqBAIJ, 27593964eb88SJed Brown MatInvertBlockDiagonal_SeqBAIJ, 2760f4259b30SLisandro Dalcin NULL, 2761f4259b30SLisandro Dalcin NULL, 2762f4259b30SLisandro Dalcin /*129*/ NULL, 2763f4259b30SLisandro Dalcin NULL, 2764f4259b30SLisandro Dalcin NULL, 2765f4259b30SLisandro Dalcin NULL, 2766f4259b30SLisandro Dalcin NULL, 2767f4259b30SLisandro Dalcin /*134*/ NULL, 2768f4259b30SLisandro Dalcin NULL, 2769f4259b30SLisandro Dalcin NULL, 2770f4259b30SLisandro Dalcin NULL, 2771f4259b30SLisandro Dalcin NULL, 277246533700Sstefano_zampini /*139*/ MatSetBlockSizes_Default, 2773f4259b30SLisandro Dalcin NULL, 2774f4259b30SLisandro Dalcin NULL, 2775bdf6f3fcSHong Zhang MatFDColoringSetUp_SeqXAIJ, 2776f4259b30SLisandro Dalcin NULL, 277786e85357SHong Zhang /*144*/MatCreateMPIMatConcatenateSeqMat_SeqBAIJ, 2778d70f29a3SPierre Jolivet MatDestroySubMatrices_SeqBAIJ, 2779d70f29a3SPierre Jolivet NULL, 2780d70f29a3SPierre Jolivet NULL 278199cafbc1SBarry Smith }; 27822593348eSBarry Smith 27837087cfbeSBarry Smith PetscErrorCode MatStoreValues_SeqBAIJ(Mat mat) 27843e90b805SBarry Smith { 27853e90b805SBarry Smith Mat_SeqBAIJ *aij = (Mat_SeqBAIJ*)mat->data; 27868ece6314SShri Abhyankar PetscInt nz = aij->i[aij->mbs]*aij->bs2; 27873e90b805SBarry Smith 27883e90b805SBarry Smith PetscFunctionBegin; 27895f80ce2aSJacob Faibussowitsch PetscCheck(aij->nonew == 1,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first"); 27903e90b805SBarry Smith 27913e90b805SBarry Smith /* allocate space for values if not already there */ 27923e90b805SBarry Smith if (!aij->saved_values) { 27939566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz+1,&aij->saved_values)); 27949566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)mat,(nz+1)*sizeof(PetscScalar))); 27953e90b805SBarry Smith } 27963e90b805SBarry Smith 27973e90b805SBarry Smith /* copy values over */ 27989566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(aij->saved_values,aij->a,nz)); 27993e90b805SBarry Smith PetscFunctionReturn(0); 28003e90b805SBarry Smith } 28013e90b805SBarry Smith 28027087cfbeSBarry Smith PetscErrorCode MatRetrieveValues_SeqBAIJ(Mat mat) 28033e90b805SBarry Smith { 28043e90b805SBarry Smith Mat_SeqBAIJ *aij = (Mat_SeqBAIJ*)mat->data; 28058ece6314SShri Abhyankar PetscInt nz = aij->i[aij->mbs]*aij->bs2; 28063e90b805SBarry Smith 28073e90b805SBarry Smith PetscFunctionBegin; 28085f80ce2aSJacob Faibussowitsch PetscCheck(aij->nonew == 1,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first"); 28095f80ce2aSJacob Faibussowitsch PetscCheck(aij->saved_values,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Must call MatStoreValues(A);first"); 28103e90b805SBarry Smith 28113e90b805SBarry Smith /* copy values over */ 28129566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(aij->a,aij->saved_values,nz)); 28133e90b805SBarry Smith PetscFunctionReturn(0); 28143e90b805SBarry Smith } 28153e90b805SBarry Smith 2816cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqAIJ(Mat, MatType,MatReuse,Mat*); 2817cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqSBAIJ(Mat, MatType,MatReuse,Mat*); 2818273d9f13SBarry Smith 2819b5b72c8aSIrina Sokolova PetscErrorCode MatSeqBAIJSetPreallocation_SeqBAIJ(Mat B,PetscInt bs,PetscInt nz,PetscInt *nnz) 2820a23d5eceSKris Buschelman { 2821a23d5eceSKris Buschelman Mat_SeqBAIJ *b; 28226849ba73SBarry Smith PetscErrorCode ierr; 2823535b19f3SBarry Smith PetscInt i,mbs,nbs,bs2; 28248afaa268SBarry Smith PetscBool flg = PETSC_FALSE,skipallocation = PETSC_FALSE,realalloc = PETSC_FALSE; 2825a23d5eceSKris Buschelman 2826a23d5eceSKris Buschelman PetscFunctionBegin; 28272576faa2SJed Brown if (nz >= 0 || nnz) realalloc = PETSC_TRUE; 2828ab93d7beSBarry Smith if (nz == MAT_SKIP_ALLOCATION) { 2829ab93d7beSBarry Smith skipallocation = PETSC_TRUE; 2830ab93d7beSBarry Smith nz = 0; 2831ab93d7beSBarry Smith } 28328c07d4e3SBarry Smith 28339566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(B,PetscAbs(bs))); 28349566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 28359566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 28369566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap,&bs)); 2837899cda47SBarry Smith 2838899cda47SBarry Smith B->preallocated = PETSC_TRUE; 2839899cda47SBarry Smith 2840d0f46423SBarry Smith mbs = B->rmap->n/bs; 2841d0f46423SBarry Smith nbs = B->cmap->n/bs; 2842a23d5eceSKris Buschelman bs2 = bs*bs; 2843a23d5eceSKris Buschelman 28445f80ce2aSJacob Faibussowitsch PetscCheck(mbs*bs==B->rmap->n && nbs*bs==B->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Number rows %" PetscInt_FMT ", cols %" PetscInt_FMT " must be divisible by blocksize %" PetscInt_FMT,B->rmap->N,B->cmap->n,bs); 2845a23d5eceSKris Buschelman 2846a23d5eceSKris Buschelman if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 5; 28475f80ce2aSJacob Faibussowitsch PetscCheck(nz >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"nz cannot be less than 0: value %" PetscInt_FMT,nz); 2848a23d5eceSKris Buschelman if (nnz) { 2849a23d5eceSKris Buschelman for (i=0; i<mbs; i++) { 28505f80ce2aSJacob Faibussowitsch PetscCheck(nnz[i] >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"nnz cannot be less than 0: local row %" PetscInt_FMT " value %" PetscInt_FMT,i,nnz[i]); 28515f80ce2aSJacob Faibussowitsch PetscCheck(nnz[i] <= nbs,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"nnz cannot be greater than block row length: local row %" PetscInt_FMT " value %" PetscInt_FMT " rowlength %" PetscInt_FMT,i,nnz[i],nbs); 2852a23d5eceSKris Buschelman } 2853a23d5eceSKris Buschelman } 2854a23d5eceSKris Buschelman 2855a23d5eceSKris Buschelman b = (Mat_SeqBAIJ*)B->data; 28569566063dSJacob Faibussowitsch ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Optimize options for SEQBAIJ matrix 2 ","Mat");PetscCall(ierr); 28579566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-mat_no_unroll","Do not optimize for block size (slow)",NULL,flg,&flg,NULL)); 28589566063dSJacob Faibussowitsch ierr = PetscOptionsEnd();PetscCall(ierr); 28598c07d4e3SBarry Smith 2860a23d5eceSKris Buschelman if (!flg) { 2861a23d5eceSKris Buschelman switch (bs) { 2862a23d5eceSKris Buschelman case 1: 2863a23d5eceSKris Buschelman B->ops->mult = MatMult_SeqBAIJ_1; 2864a23d5eceSKris Buschelman B->ops->multadd = MatMultAdd_SeqBAIJ_1; 2865a23d5eceSKris Buschelman break; 2866a23d5eceSKris Buschelman case 2: 2867a23d5eceSKris Buschelman B->ops->mult = MatMult_SeqBAIJ_2; 2868a23d5eceSKris Buschelman B->ops->multadd = MatMultAdd_SeqBAIJ_2; 2869a23d5eceSKris Buschelman break; 2870a23d5eceSKris Buschelman case 3: 2871a23d5eceSKris Buschelman B->ops->mult = MatMult_SeqBAIJ_3; 2872a23d5eceSKris Buschelman B->ops->multadd = MatMultAdd_SeqBAIJ_3; 2873a23d5eceSKris Buschelman break; 2874a23d5eceSKris Buschelman case 4: 2875a23d5eceSKris Buschelman B->ops->mult = MatMult_SeqBAIJ_4; 2876a23d5eceSKris Buschelman B->ops->multadd = MatMultAdd_SeqBAIJ_4; 2877a23d5eceSKris Buschelman break; 2878a23d5eceSKris Buschelman case 5: 2879a23d5eceSKris Buschelman B->ops->mult = MatMult_SeqBAIJ_5; 2880a23d5eceSKris Buschelman B->ops->multadd = MatMultAdd_SeqBAIJ_5; 2881a23d5eceSKris Buschelman break; 2882a23d5eceSKris Buschelman case 6: 2883a23d5eceSKris Buschelman B->ops->mult = MatMult_SeqBAIJ_6; 2884a23d5eceSKris Buschelman B->ops->multadd = MatMultAdd_SeqBAIJ_6; 2885a23d5eceSKris Buschelman break; 2886a23d5eceSKris Buschelman case 7: 2887a23d5eceSKris Buschelman B->ops->mult = MatMult_SeqBAIJ_7; 2888a23d5eceSKris Buschelman B->ops->multadd = MatMultAdd_SeqBAIJ_7; 2889a23d5eceSKris Buschelman break; 289096e086a2SDaniel Kokron case 9: 28916679dcc1SBarry Smith { 28926679dcc1SBarry Smith PetscInt version = 1; 28939566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetInt(NULL,((PetscObject)B)->prefix,"-mat_baij_mult_version",&version,NULL)); 28946679dcc1SBarry Smith switch (version) { 28955f70456aSHong Zhang #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX2__) && defined(__FMA__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 28966679dcc1SBarry Smith case 1: 289796e086a2SDaniel Kokron B->ops->mult = MatMult_SeqBAIJ_9_AVX2; 289896e086a2SDaniel Kokron B->ops->multadd = MatMultAdd_SeqBAIJ_9_AVX2; 28999566063dSJacob Faibussowitsch PetscCall(PetscInfo((PetscObject)B,"Using AVX2 for MatMult for BAIJ for blocksize %" PetscInt_FMT "\n",bs)); 29006679dcc1SBarry Smith break; 29016679dcc1SBarry Smith #endif 29026679dcc1SBarry Smith default: 290396e086a2SDaniel Kokron B->ops->mult = MatMult_SeqBAIJ_N; 290496e086a2SDaniel Kokron B->ops->multadd = MatMultAdd_SeqBAIJ_N; 29059566063dSJacob Faibussowitsch PetscCall(PetscInfo((PetscObject)B,"Using BLAS for MatMult for BAIJ for blocksize %" PetscInt_FMT "\n",bs)); 290696e086a2SDaniel Kokron break; 29076679dcc1SBarry Smith } 29086679dcc1SBarry Smith break; 29096679dcc1SBarry Smith } 2910ebada01fSBarry Smith case 11: 2911ebada01fSBarry Smith B->ops->mult = MatMult_SeqBAIJ_11; 2912ebada01fSBarry Smith B->ops->multadd = MatMultAdd_SeqBAIJ_11; 2913ebada01fSBarry Smith break; 29146679dcc1SBarry Smith case 12: 29156679dcc1SBarry Smith { 29166679dcc1SBarry Smith PetscInt version = 1; 29179566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetInt(NULL,((PetscObject)B)->prefix,"-mat_baij_mult_version",&version,NULL)); 29186679dcc1SBarry Smith switch (version) { 29196679dcc1SBarry Smith case 1: 29206679dcc1SBarry Smith B->ops->mult = MatMult_SeqBAIJ_12_ver1; 29216679dcc1SBarry Smith B->ops->multadd = MatMultAdd_SeqBAIJ_12_ver1; 29229566063dSJacob Faibussowitsch PetscCall(PetscInfo((PetscObject)B,"Using version %" PetscInt_FMT " of MatMult for BAIJ for blocksize %" PetscInt_FMT "\n",version,bs)); 29238ab949d8SShri Abhyankar break; 29246679dcc1SBarry Smith case 2: 29256679dcc1SBarry Smith B->ops->mult = MatMult_SeqBAIJ_12_ver2; 29266679dcc1SBarry Smith B->ops->multadd = MatMultAdd_SeqBAIJ_12_ver2; 29279566063dSJacob Faibussowitsch PetscCall(PetscInfo((PetscObject)B,"Using version %" PetscInt_FMT " of MatMult for BAIJ for blocksize %" PetscInt_FMT "\n",version,bs)); 29286679dcc1SBarry Smith break; 29296679dcc1SBarry Smith #if defined(PETSC_HAVE_IMMINTRIN_H) && defined(__AVX2__) && defined(__FMA__) && defined(PETSC_USE_REAL_DOUBLE) && !defined(PETSC_USE_COMPLEX) && !defined(PETSC_USE_64BIT_INDICES) 29306679dcc1SBarry Smith case 3: 29316679dcc1SBarry Smith B->ops->mult = MatMult_SeqBAIJ_12_AVX2; 29326679dcc1SBarry Smith B->ops->multadd = MatMultAdd_SeqBAIJ_12_ver1; 29339566063dSJacob Faibussowitsch PetscCall(PetscInfo((PetscObject)B,"Using AVX2 for MatMult for BAIJ for blocksize %" PetscInt_FMT "\n",bs)); 29346679dcc1SBarry Smith break; 29356679dcc1SBarry Smith #endif 2936a23d5eceSKris Buschelman default: 2937a23d5eceSKris Buschelman B->ops->mult = MatMult_SeqBAIJ_N; 2938a23d5eceSKris Buschelman B->ops->multadd = MatMultAdd_SeqBAIJ_N; 29399566063dSJacob Faibussowitsch PetscCall(PetscInfo((PetscObject)B,"Using BLAS for MatMult for BAIJ for blocksize %" PetscInt_FMT "\n",bs)); 29406679dcc1SBarry Smith break; 29416679dcc1SBarry Smith } 29426679dcc1SBarry Smith break; 29436679dcc1SBarry Smith } 29446679dcc1SBarry Smith case 15: 29456679dcc1SBarry Smith { 29466679dcc1SBarry Smith PetscInt version = 1; 29479566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetInt(NULL,((PetscObject)B)->prefix,"-mat_baij_mult_version",&version,NULL)); 29486679dcc1SBarry Smith switch (version) { 29496679dcc1SBarry Smith case 1: 29506679dcc1SBarry Smith B->ops->mult = MatMult_SeqBAIJ_15_ver1; 29519566063dSJacob Faibussowitsch PetscCall(PetscInfo((PetscObject)B,"Using version %" PetscInt_FMT " of MatMult for BAIJ for blocksize %" PetscInt_FMT "\n",version,bs)); 29526679dcc1SBarry Smith break; 29536679dcc1SBarry Smith case 2: 29546679dcc1SBarry Smith B->ops->mult = MatMult_SeqBAIJ_15_ver2; 29559566063dSJacob Faibussowitsch PetscCall(PetscInfo((PetscObject)B,"Using version %" PetscInt_FMT " of MatMult for BAIJ for blocksize %" PetscInt_FMT "\n",version,bs)); 29566679dcc1SBarry Smith break; 29576679dcc1SBarry Smith case 3: 29586679dcc1SBarry Smith B->ops->mult = MatMult_SeqBAIJ_15_ver3; 29599566063dSJacob Faibussowitsch PetscCall(PetscInfo((PetscObject)B,"Using version %" PetscInt_FMT " of MatMult for BAIJ for blocksize %" PetscInt_FMT "\n",version,bs)); 29606679dcc1SBarry Smith break; 29616679dcc1SBarry Smith case 4: 29626679dcc1SBarry Smith B->ops->mult = MatMult_SeqBAIJ_15_ver4; 29639566063dSJacob Faibussowitsch PetscCall(PetscInfo((PetscObject)B,"Using version %" PetscInt_FMT " of MatMult for BAIJ for blocksize %" PetscInt_FMT "\n",version,bs)); 29646679dcc1SBarry Smith break; 29656679dcc1SBarry Smith default: 29666679dcc1SBarry Smith B->ops->mult = MatMult_SeqBAIJ_N; 29679566063dSJacob Faibussowitsch PetscCall(PetscInfo((PetscObject)B,"Using BLAS for MatMult for BAIJ for blocksize %" PetscInt_FMT "\n",bs)); 29686679dcc1SBarry Smith break; 29696679dcc1SBarry Smith } 29706679dcc1SBarry Smith B->ops->multadd = MatMultAdd_SeqBAIJ_N; 29716679dcc1SBarry Smith break; 29726679dcc1SBarry Smith } 29736679dcc1SBarry Smith default: 29746679dcc1SBarry Smith B->ops->mult = MatMult_SeqBAIJ_N; 29756679dcc1SBarry Smith B->ops->multadd = MatMultAdd_SeqBAIJ_N; 29769566063dSJacob Faibussowitsch PetscCall(PetscInfo((PetscObject)B,"Using BLAS for MatMult for BAIJ for blocksize %" PetscInt_FMT "\n",bs)); 2977a23d5eceSKris Buschelman break; 2978a23d5eceSKris Buschelman } 2979a23d5eceSKris Buschelman } 2980e48d15efSToby Isaac B->ops->sor = MatSOR_SeqBAIJ; 2981a23d5eceSKris Buschelman b->mbs = mbs; 2982a23d5eceSKris Buschelman b->nbs = nbs; 2983ab93d7beSBarry Smith if (!skipallocation) { 29842ee49352SLisandro Dalcin if (!b->imax) { 29859566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(mbs,&b->imax,mbs,&b->ilen)); 29869566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)B,2*mbs*sizeof(PetscInt))); 298726fbe8dcSKarl Rupp 29884fd072dbSBarry Smith b->free_imax_ilen = PETSC_TRUE; 29892ee49352SLisandro Dalcin } 2990ab93d7beSBarry Smith /* b->ilen will count nonzeros in each block row so far. */ 299126fbe8dcSKarl Rupp for (i=0; i<mbs; i++) b->ilen[i] = 0; 2992a23d5eceSKris Buschelman if (!nnz) { 2993a23d5eceSKris Buschelman if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 5; 2994c62bd62aSJed Brown else if (nz < 0) nz = 1; 29955d2a9ed1SStefano Zampini nz = PetscMin(nz,nbs); 2996a23d5eceSKris Buschelman for (i=0; i<mbs; i++) b->imax[i] = nz; 29979566063dSJacob Faibussowitsch PetscCall(PetscIntMultError(nz,mbs,&nz)); 2998a23d5eceSKris Buschelman } else { 2999c73702f5SBarry Smith PetscInt64 nz64 = 0; 3000c73702f5SBarry Smith for (i=0; i<mbs; i++) {b->imax[i] = nnz[i]; nz64 += nnz[i];} 30019566063dSJacob Faibussowitsch PetscCall(PetscIntCast(nz64,&nz)); 3002a23d5eceSKris Buschelman } 3003a23d5eceSKris Buschelman 3004a23d5eceSKris Buschelman /* allocate the matrix space */ 30059566063dSJacob Faibussowitsch PetscCall(MatSeqXAIJFreeAIJ(B,&b->a,&b->j,&b->i)); 3006672ba085SHong Zhang if (B->structure_only) { 30079566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz,&b->j)); 30089566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(B->rmap->N+1,&b->i)); 30099566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)B,(B->rmap->N+1)*sizeof(PetscInt)+nz*sizeof(PetscInt))); 3010672ba085SHong Zhang } else { 30116679dcc1SBarry Smith PetscInt nzbs2 = 0; 30129566063dSJacob Faibussowitsch PetscCall(PetscIntMultError(nz,bs2,&nzbs2)); 30139566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(nzbs2,&b->a,nz,&b->j,B->rmap->N+1,&b->i)); 30149566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)B,(B->rmap->N+1)*sizeof(PetscInt)+nz*(bs2*sizeof(PetscScalar)+sizeof(PetscInt)))); 30159566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(b->a,nz*bs2)); 3016672ba085SHong Zhang } 30179566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(b->j,nz)); 301826fbe8dcSKarl Rupp 3019672ba085SHong Zhang if (B->structure_only) { 3020672ba085SHong Zhang b->singlemalloc = PETSC_FALSE; 3021672ba085SHong Zhang b->free_a = PETSC_FALSE; 3022672ba085SHong Zhang } else { 3023a23d5eceSKris Buschelman b->singlemalloc = PETSC_TRUE; 3024672ba085SHong Zhang b->free_a = PETSC_TRUE; 3025672ba085SHong Zhang } 3026672ba085SHong Zhang b->free_ij = PETSC_TRUE; 3027672ba085SHong Zhang 3028a23d5eceSKris Buschelman b->i[0] = 0; 3029a23d5eceSKris Buschelman for (i=1; i<mbs+1; i++) { 3030a23d5eceSKris Buschelman b->i[i] = b->i[i-1] + b->imax[i-1]; 3031a23d5eceSKris Buschelman } 3032672ba085SHong Zhang 3033e811da20SHong Zhang } else { 3034e6b907acSBarry Smith b->free_a = PETSC_FALSE; 3035e6b907acSBarry Smith b->free_ij = PETSC_FALSE; 3036ab93d7beSBarry Smith } 3037a23d5eceSKris Buschelman 3038a23d5eceSKris Buschelman b->bs2 = bs2; 3039a23d5eceSKris Buschelman b->mbs = mbs; 3040a23d5eceSKris Buschelman b->nz = 0; 3041b32cb4a7SJed Brown b->maxnz = nz; 3042b32cb4a7SJed Brown B->info.nz_unneeded = (PetscReal)b->maxnz*bs2; 3043cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 3044cb7b82ddSBarry Smith B->assembled = PETSC_FALSE; 30459566063dSJacob Faibussowitsch if (realalloc) PetscCall(MatSetOption(B,MAT_NEW_NONZERO_ALLOCATION_ERR,PETSC_TRUE)); 3046a23d5eceSKris Buschelman PetscFunctionReturn(0); 3047a23d5eceSKris Buschelman } 3048a23d5eceSKris Buschelman 3049cf12db73SBarry Smith PetscErrorCode MatSeqBAIJSetPreallocationCSR_SeqBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 3050725b52f3SLisandro Dalcin { 3051725b52f3SLisandro Dalcin PetscInt i,m,nz,nz_max=0,*nnz; 3052f4259b30SLisandro Dalcin PetscScalar *values=NULL; 3053d47bf9aaSJed Brown PetscBool roworiented = ((Mat_SeqBAIJ*)B->data)->roworiented; 3054725b52f3SLisandro Dalcin 3055725b52f3SLisandro Dalcin PetscFunctionBegin; 30565f80ce2aSJacob Faibussowitsch PetscCheck(bs >= 1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %" PetscInt_FMT,bs); 30579566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->rmap,bs)); 30589566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->cmap,bs)); 30599566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 30609566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 30619566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap,&bs)); 3062d0f46423SBarry Smith m = B->rmap->n/bs; 3063725b52f3SLisandro Dalcin 30645f80ce2aSJacob Faibussowitsch PetscCheck(ii[0] == 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %" PetscInt_FMT,ii[0]); 30659566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m+1, &nnz)); 3066725b52f3SLisandro Dalcin for (i=0; i<m; i++) { 3067cf12db73SBarry Smith nz = ii[i+1]- ii[i]; 30685f80ce2aSJacob Faibussowitsch PetscCheck(nz >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT,i,nz); 3069725b52f3SLisandro Dalcin nz_max = PetscMax(nz_max, nz); 3070725b52f3SLisandro Dalcin nnz[i] = nz; 3071725b52f3SLisandro Dalcin } 30729566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(B,bs,0,nnz)); 30739566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz)); 3074725b52f3SLisandro Dalcin 3075725b52f3SLisandro Dalcin values = (PetscScalar*)V; 3076725b52f3SLisandro Dalcin if (!values) { 30779566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(bs*bs*(nz_max+1),&values)); 3078725b52f3SLisandro Dalcin } 3079725b52f3SLisandro Dalcin for (i=0; i<m; i++) { 3080cf12db73SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 3081cf12db73SBarry Smith const PetscInt *icols = jj + ii[i]; 3082bb80cfbbSStefano Zampini if (bs == 1 || !roworiented) { 3083cf12db73SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 30849566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ(B,1,&i,ncols,icols,svals,INSERT_VALUES)); 30853adadaf3SJed Brown } else { 30863adadaf3SJed Brown PetscInt j; 30873adadaf3SJed Brown for (j=0; j<ncols; j++) { 30883adadaf3SJed Brown const PetscScalar *svals = values + (V ? (bs*bs*(ii[i]+j)) : 0); 30899566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ(B,1,&i,1,&icols[j],svals,INSERT_VALUES)); 30903adadaf3SJed Brown } 30913adadaf3SJed Brown } 3092725b52f3SLisandro Dalcin } 30939566063dSJacob Faibussowitsch if (!V) PetscCall(PetscFree(values)); 30949566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY)); 30959566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY)); 30969566063dSJacob Faibussowitsch PetscCall(MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE)); 3097725b52f3SLisandro Dalcin PetscFunctionReturn(0); 3098725b52f3SLisandro Dalcin } 3099725b52f3SLisandro Dalcin 3100cda14afcSprj- /*@C 3101cda14afcSprj- MatSeqBAIJGetArray - gives access to the array where the data for a MATSEQBAIJ matrix is stored 3102cda14afcSprj- 3103cda14afcSprj- Not Collective 3104cda14afcSprj- 3105cda14afcSprj- Input Parameter: 3106cda14afcSprj- . mat - a MATSEQBAIJ matrix 3107cda14afcSprj- 3108cda14afcSprj- Output Parameter: 3109cda14afcSprj- . array - pointer to the data 3110cda14afcSprj- 3111cda14afcSprj- Level: intermediate 3112cda14afcSprj- 3113cda14afcSprj- .seealso: MatSeqBAIJRestoreArray(), MatSeqAIJGetArray(), MatSeqAIJRestoreArray() 3114cda14afcSprj- @*/ 3115cda14afcSprj- PetscErrorCode MatSeqBAIJGetArray(Mat A,PetscScalar **array) 3116cda14afcSprj- { 3117cda14afcSprj- PetscFunctionBegin; 3118*cac4c232SBarry Smith PetscUseMethod(A,"MatSeqBAIJGetArray_C",(Mat,PetscScalar**),(A,array)); 3119cda14afcSprj- PetscFunctionReturn(0); 3120cda14afcSprj- } 3121cda14afcSprj- 3122cda14afcSprj- /*@C 3123cda14afcSprj- MatSeqBAIJRestoreArray - returns access to the array where the data for a MATSEQBAIJ matrix is stored obtained by MatSeqBAIJGetArray() 3124cda14afcSprj- 3125cda14afcSprj- Not Collective 3126cda14afcSprj- 3127cda14afcSprj- Input Parameters: 3128cda14afcSprj- + mat - a MATSEQBAIJ matrix 3129cda14afcSprj- - array - pointer to the data 3130cda14afcSprj- 3131cda14afcSprj- Level: intermediate 3132cda14afcSprj- 3133cda14afcSprj- .seealso: MatSeqBAIJGetArray(), MatSeqAIJGetArray(), MatSeqAIJRestoreArray() 3134cda14afcSprj- @*/ 3135cda14afcSprj- PetscErrorCode MatSeqBAIJRestoreArray(Mat A,PetscScalar **array) 3136cda14afcSprj- { 3137cda14afcSprj- PetscFunctionBegin; 3138*cac4c232SBarry Smith PetscUseMethod(A,"MatSeqBAIJRestoreArray_C",(Mat,PetscScalar**),(A,array)); 3139cda14afcSprj- PetscFunctionReturn(0); 3140cda14afcSprj- } 3141cda14afcSprj- 31420bad9183SKris Buschelman /*MC 3143fafad747SKris Buschelman MATSEQBAIJ - MATSEQBAIJ = "seqbaij" - A matrix type to be used for sequential block sparse matrices, based on 31440bad9183SKris Buschelman block sparse compressed row format. 31450bad9183SKris Buschelman 31460bad9183SKris Buschelman Options Database Keys: 31476679dcc1SBarry Smith + -mat_type seqbaij - sets the matrix type to "seqbaij" during a call to MatSetFromOptions() 31486679dcc1SBarry Smith - -mat_baij_mult_version version - indicate the version of the matrix-vector product to use (0 often indicates using BLAS) 31490bad9183SKris Buschelman 31500bad9183SKris Buschelman Level: beginner 31510cd7f59aSBarry Smith 31520cd7f59aSBarry Smith Notes: 31530cd7f59aSBarry Smith MatSetOptions(,MAT_STRUCTURE_ONLY,PETSC_TRUE) may be called for this matrix type. In this no 31540cd7f59aSBarry Smith space is allocated for the nonzero entries and any entries passed with MatSetValues() are ignored 31550bad9183SKris Buschelman 31566679dcc1SBarry Smith Run with -info to see what version of the matrix-vector product is being used 31576679dcc1SBarry Smith 3158f0c06035SSatish Balay .seealso: MatCreateSeqBAIJ() 31590bad9183SKris Buschelman M*/ 31600bad9183SKris Buschelman 3161cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqBSTRM(Mat, MatType,MatReuse,Mat*); 3162b24902e0SBarry Smith 31638cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_SeqBAIJ(Mat B) 31642593348eSBarry Smith { 3165c1ac3661SBarry Smith PetscMPIInt size; 3166b6490206SBarry Smith Mat_SeqBAIJ *b; 31673b2fbd54SBarry Smith 31683a40ed3dSBarry Smith PetscFunctionBegin; 31699566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B),&size)); 31705f80ce2aSJacob Faibussowitsch PetscCheck(size == 1,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Comm must be of size 1"); 3171b6490206SBarry Smith 31729566063dSJacob Faibussowitsch PetscCall(PetscNewLog(B,&b)); 3173b0a32e0cSBarry Smith B->data = (void*)b; 31749566063dSJacob Faibussowitsch PetscCall(PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps))); 317526fbe8dcSKarl Rupp 3176f4259b30SLisandro Dalcin b->row = NULL; 3177f4259b30SLisandro Dalcin b->col = NULL; 3178f4259b30SLisandro Dalcin b->icol = NULL; 31792593348eSBarry Smith b->reallocs = 0; 3180f4259b30SLisandro Dalcin b->saved_values = NULL; 31812593348eSBarry Smith 3182c4992f7dSBarry Smith b->roworiented = PETSC_TRUE; 31832593348eSBarry Smith b->nonew = 0; 3184f4259b30SLisandro Dalcin b->diag = NULL; 3185f4259b30SLisandro Dalcin B->spptr = NULL; 3186b32cb4a7SJed Brown B->info.nz_unneeded = (PetscReal)b->maxnz*b->bs2; 3187a9817697SBarry Smith b->keepnonzeropattern = PETSC_FALSE; 31884e220ebcSLois Curfman McInnes 31899566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatSeqBAIJGetArray_C",MatSeqBAIJGetArray_SeqBAIJ)); 31909566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatSeqBAIJRestoreArray_C",MatSeqBAIJRestoreArray_SeqBAIJ)); 31919566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_SeqBAIJ)); 31929566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_SeqBAIJ)); 31939566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatSeqBAIJSetColumnIndices_C",MatSeqBAIJSetColumnIndices_SeqBAIJ)); 31949566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqbaij_seqaij_C",MatConvert_SeqBAIJ_SeqAIJ)); 31959566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqbaij_seqsbaij_C",MatConvert_SeqBAIJ_SeqSBAIJ)); 31969566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatSeqBAIJSetPreallocation_C",MatSeqBAIJSetPreallocation_SeqBAIJ)); 31979566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatSeqBAIJSetPreallocationCSR_C",MatSeqBAIJSetPreallocationCSR_SeqBAIJ)); 31989566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatIsTranspose_C",MatIsTranspose_SeqBAIJ)); 31997ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE) 32009566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqbaij_hypre_C",MatConvert_AIJ_HYPRE)); 32017ea3e4caSstefano_zampini #endif 32029566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_seqbaij_is_C",MatConvert_XAIJ_IS)); 32039566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B,MATSEQBAIJ)); 32043a40ed3dSBarry Smith PetscFunctionReturn(0); 32052593348eSBarry Smith } 32062593348eSBarry Smith 3207ace3abfcSBarry Smith PetscErrorCode MatDuplicateNoCreate_SeqBAIJ(Mat C,Mat A,MatDuplicateOption cpvalues,PetscBool mallocmatspace) 32082593348eSBarry Smith { 3209b24902e0SBarry Smith Mat_SeqBAIJ *c = (Mat_SeqBAIJ*)C->data,*a = (Mat_SeqBAIJ*)A->data; 3210a96a251dSBarry Smith PetscInt i,mbs = a->mbs,nz = a->nz,bs2 = a->bs2; 3211de6a44a3SBarry Smith 32123a40ed3dSBarry Smith PetscFunctionBegin; 32135f80ce2aSJacob Faibussowitsch PetscCheck(a->i[mbs] == nz,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Corrupt matrix"); 32142593348eSBarry Smith 32154fd072dbSBarry Smith if (cpvalues == MAT_SHARE_NONZERO_PATTERN) { 32164fd072dbSBarry Smith c->imax = a->imax; 32174fd072dbSBarry Smith c->ilen = a->ilen; 32184fd072dbSBarry Smith c->free_imax_ilen = PETSC_FALSE; 32194fd072dbSBarry Smith } else { 32209566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(mbs,&c->imax,mbs,&c->ilen)); 32219566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)C,2*mbs*sizeof(PetscInt))); 3222b6490206SBarry Smith for (i=0; i<mbs; i++) { 32232593348eSBarry Smith c->imax[i] = a->imax[i]; 32242593348eSBarry Smith c->ilen[i] = a->ilen[i]; 32252593348eSBarry Smith } 32264fd072dbSBarry Smith c->free_imax_ilen = PETSC_TRUE; 32274fd072dbSBarry Smith } 32282593348eSBarry Smith 32292593348eSBarry Smith /* allocate the matrix space */ 323016a2bf60SHong Zhang if (mallocmatspace) { 32314fd072dbSBarry Smith if (cpvalues == MAT_SHARE_NONZERO_PATTERN) { 32329566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(bs2*nz,&c->a)); 32339566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)C,a->i[mbs]*bs2*sizeof(PetscScalar))); 323426fbe8dcSKarl Rupp 32354fd072dbSBarry Smith c->i = a->i; 32364fd072dbSBarry Smith c->j = a->j; 3237379be0ddSLisandro Dalcin c->singlemalloc = PETSC_FALSE; 3238379be0ddSLisandro Dalcin c->free_a = PETSC_TRUE; 3239379be0ddSLisandro Dalcin c->free_ij = PETSC_FALSE; 32404fd072dbSBarry Smith c->parent = A; 32411e40a84eSLisandro Dalcin C->preallocated = PETSC_TRUE; 32421e40a84eSLisandro Dalcin C->assembled = PETSC_TRUE; 324326fbe8dcSKarl Rupp 32449566063dSJacob Faibussowitsch PetscCall(PetscObjectReference((PetscObject)A)); 32459566063dSJacob Faibussowitsch PetscCall(MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE)); 32469566063dSJacob Faibussowitsch PetscCall(MatSetOption(C,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE)); 32474fd072dbSBarry Smith } else { 32489566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(bs2*nz,&c->a,nz,&c->j,mbs+1,&c->i)); 32499566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)C,a->i[mbs]*(bs2*sizeof(PetscScalar)+sizeof(PetscInt))+(mbs+1)*sizeof(PetscInt))); 325026fbe8dcSKarl Rupp 3251c4992f7dSBarry Smith c->singlemalloc = PETSC_TRUE; 3252379be0ddSLisandro Dalcin c->free_a = PETSC_TRUE; 32534fd072dbSBarry Smith c->free_ij = PETSC_TRUE; 325426fbe8dcSKarl Rupp 32559566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(c->i,a->i,mbs+1)); 3256b6490206SBarry Smith if (mbs > 0) { 32579566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(c->j,a->j,nz)); 32582e8a6d31SBarry Smith if (cpvalues == MAT_COPY_VALUES) { 32599566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(c->a,a->a,bs2*nz)); 32602e8a6d31SBarry Smith } else { 32619566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(c->a,bs2*nz)); 32622593348eSBarry Smith } 32632593348eSBarry Smith } 32641e40a84eSLisandro Dalcin C->preallocated = PETSC_TRUE; 32651e40a84eSLisandro Dalcin C->assembled = PETSC_TRUE; 326616a2bf60SHong Zhang } 32674fd072dbSBarry Smith } 326816a2bf60SHong Zhang 32692593348eSBarry Smith c->roworiented = a->roworiented; 32702593348eSBarry Smith c->nonew = a->nonew; 327126fbe8dcSKarl Rupp 32729566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->rmap,&C->rmap)); 32739566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->cmap,&C->cmap)); 327426fbe8dcSKarl Rupp 32755c9eb25fSBarry Smith c->bs2 = a->bs2; 32765c9eb25fSBarry Smith c->mbs = a->mbs; 32775c9eb25fSBarry Smith c->nbs = a->nbs; 32782593348eSBarry Smith 32792593348eSBarry Smith if (a->diag) { 32804fd072dbSBarry Smith if (cpvalues == MAT_SHARE_NONZERO_PATTERN) { 32814fd072dbSBarry Smith c->diag = a->diag; 32824fd072dbSBarry Smith c->free_diag = PETSC_FALSE; 32834fd072dbSBarry Smith } else { 32849566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mbs+1,&c->diag)); 32859566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)C,(mbs+1)*sizeof(PetscInt))); 328626fbe8dcSKarl Rupp for (i=0; i<mbs; i++) c->diag[i] = a->diag[i]; 32874fd072dbSBarry Smith c->free_diag = PETSC_TRUE; 32884fd072dbSBarry Smith } 3289f4259b30SLisandro Dalcin } else c->diag = NULL; 329026fbe8dcSKarl Rupp 32912593348eSBarry Smith c->nz = a->nz; 3292f2cbd3d5SJed Brown c->maxnz = a->nz; /* Since we allocate exactly the right amount */ 3293f361c04dSBarry Smith c->solve_work = NULL; 3294f361c04dSBarry Smith c->mult_work = NULL; 3295f361c04dSBarry Smith c->sor_workt = NULL; 3296f361c04dSBarry Smith c->sor_work = NULL; 329788e51ccdSHong Zhang 329888e51ccdSHong Zhang c->compressedrow.use = a->compressedrow.use; 329988e51ccdSHong Zhang c->compressedrow.nrows = a->compressedrow.nrows; 3300cd6b891eSBarry Smith if (a->compressedrow.use) { 330188e51ccdSHong Zhang i = a->compressedrow.nrows; 33029566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(i+1,&c->compressedrow.i,i+1,&c->compressedrow.rindex)); 33039566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)C,(2*i+1)*sizeof(PetscInt))); 33049566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(c->compressedrow.i,a->compressedrow.i,i+1)); 33059566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(c->compressedrow.rindex,a->compressedrow.rindex,i)); 330688e51ccdSHong Zhang } else { 330788e51ccdSHong Zhang c->compressedrow.use = PETSC_FALSE; 33080298fd71SBarry Smith c->compressedrow.i = NULL; 33090298fd71SBarry Smith c->compressedrow.rindex = NULL; 331088e51ccdSHong Zhang } 3311e56f5c9eSBarry Smith C->nonzerostate = A->nonzerostate; 331226fbe8dcSKarl Rupp 33139566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)A)->qlist,&((PetscObject)C)->qlist)); 33143a40ed3dSBarry Smith PetscFunctionReturn(0); 33152593348eSBarry Smith } 33162593348eSBarry Smith 3317b24902e0SBarry Smith PetscErrorCode MatDuplicate_SeqBAIJ(Mat A,MatDuplicateOption cpvalues,Mat *B) 3318b24902e0SBarry Smith { 3319b24902e0SBarry Smith PetscFunctionBegin; 33209566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A),B)); 33219566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*B,A->rmap->N,A->cmap->n,A->rmap->N,A->cmap->n)); 33229566063dSJacob Faibussowitsch PetscCall(MatSetType(*B,MATSEQBAIJ)); 33239566063dSJacob Faibussowitsch PetscCall(MatDuplicateNoCreate_SeqBAIJ(*B,A,cpvalues,PETSC_TRUE)); 3324b24902e0SBarry Smith PetscFunctionReturn(0); 3325b24902e0SBarry Smith } 3326b24902e0SBarry Smith 3327618cc2edSLisandro Dalcin /* Used for both SeqBAIJ and SeqSBAIJ matrices */ 3328b51a4376SLisandro Dalcin PetscErrorCode MatLoad_SeqBAIJ_Binary(Mat mat,PetscViewer viewer) 3329f501eaabSShri Abhyankar { 3330b51a4376SLisandro Dalcin PetscInt header[4],M,N,nz,bs,m,n,mbs,nbs,rows,cols,sum,i,j,k; 3331b51a4376SLisandro Dalcin PetscInt *rowidxs,*colidxs; 3332b51a4376SLisandro Dalcin PetscScalar *matvals; 3333b51a4376SLisandro Dalcin 3334b51a4376SLisandro Dalcin PetscFunctionBegin; 33359566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 3336b51a4376SLisandro Dalcin 3337b51a4376SLisandro Dalcin /* read matrix header */ 33389566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer,header,4,NULL,PETSC_INT)); 33395f80ce2aSJacob Faibussowitsch PetscCheck(header[0] == MAT_FILE_CLASSID,PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Not a matrix object in file"); 3340b51a4376SLisandro Dalcin M = header[1]; N = header[2]; nz = header[3]; 33415f80ce2aSJacob Faibussowitsch PetscCheck(M >= 0,PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Matrix row size (%" PetscInt_FMT ") in file is negative",M); 33425f80ce2aSJacob Faibussowitsch PetscCheck(N >= 0,PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Matrix column size (%" PetscInt_FMT ") in file is negative",N); 33435f80ce2aSJacob Faibussowitsch PetscCheck(nz >= 0,PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format on disk, cannot load as SeqBAIJ"); 3344b51a4376SLisandro Dalcin 3345b51a4376SLisandro Dalcin /* set block sizes from the viewer's .info file */ 33469566063dSJacob Faibussowitsch PetscCall(MatLoad_Binary_BlockSizes(mat,viewer)); 3347b51a4376SLisandro Dalcin /* set local and global sizes if not set already */ 3348b51a4376SLisandro Dalcin if (mat->rmap->n < 0) mat->rmap->n = M; 3349b51a4376SLisandro Dalcin if (mat->cmap->n < 0) mat->cmap->n = N; 3350b51a4376SLisandro Dalcin if (mat->rmap->N < 0) mat->rmap->N = M; 3351b51a4376SLisandro Dalcin if (mat->cmap->N < 0) mat->cmap->N = N; 33529566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 33539566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 3354b51a4376SLisandro Dalcin 3355b51a4376SLisandro Dalcin /* check if the matrix sizes are correct */ 33569566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat,&rows,&cols)); 33575f80ce2aSJacob Faibussowitsch PetscCheck(M == rows && N == cols,PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")",M,N,rows,cols); 33589566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(mat,&bs)); 33599566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat,&m,&n)); 3360b51a4376SLisandro Dalcin mbs = m/bs; nbs = n/bs; 3361b51a4376SLisandro Dalcin 3362b51a4376SLisandro Dalcin /* read in row lengths, column indices and nonzero values */ 33639566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m+1,&rowidxs)); 33649566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer,rowidxs+1,m,NULL,PETSC_INT)); 3365b51a4376SLisandro Dalcin rowidxs[0] = 0; for (i=0; i<m; i++) rowidxs[i+1] += rowidxs[i]; 3366b51a4376SLisandro Dalcin sum = rowidxs[m]; 33675f80ce2aSJacob Faibussowitsch PetscCheck(sum == nz,PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT,nz,sum); 3368b51a4376SLisandro Dalcin 3369b51a4376SLisandro Dalcin /* read in column indices and nonzero values */ 33709566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(rowidxs[m],&colidxs,nz,&matvals)); 33719566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer,colidxs,rowidxs[m],NULL,PETSC_INT)); 33729566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer,matvals,rowidxs[m],NULL,PETSC_SCALAR)); 3373b51a4376SLisandro Dalcin 3374b51a4376SLisandro Dalcin { /* preallocate matrix storage */ 3375b51a4376SLisandro Dalcin PetscBT bt; /* helper bit set to count nonzeros */ 3376b51a4376SLisandro Dalcin PetscInt *nnz; 3377618cc2edSLisandro Dalcin PetscBool sbaij; 3378b51a4376SLisandro Dalcin 33799566063dSJacob Faibussowitsch PetscCall(PetscBTCreate(nbs,&bt)); 33809566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mbs,&nnz)); 33819566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)mat,MATSEQSBAIJ,&sbaij)); 3382b51a4376SLisandro Dalcin for (i=0; i<mbs; i++) { 33839566063dSJacob Faibussowitsch PetscCall(PetscBTMemzero(nbs,bt)); 3384618cc2edSLisandro Dalcin for (k=0; k<bs; k++) { 3385618cc2edSLisandro Dalcin PetscInt row = bs*i + k; 3386618cc2edSLisandro Dalcin for (j=rowidxs[row]; j<rowidxs[row+1]; j++) { 3387618cc2edSLisandro Dalcin PetscInt col = colidxs[j]; 3388618cc2edSLisandro Dalcin if (!sbaij || col >= row) 3389618cc2edSLisandro Dalcin if (!PetscBTLookupSet(bt,col/bs)) nnz[i]++; 3390618cc2edSLisandro Dalcin } 3391618cc2edSLisandro Dalcin } 3392b51a4376SLisandro Dalcin } 33939566063dSJacob Faibussowitsch PetscCall(PetscBTDestroy(&bt)); 33949566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(mat,bs,0,nnz)); 33959566063dSJacob Faibussowitsch PetscCall(MatSeqSBAIJSetPreallocation(mat,bs,0,nnz)); 33969566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz)); 3397b51a4376SLisandro Dalcin } 3398b51a4376SLisandro Dalcin 3399b51a4376SLisandro Dalcin /* store matrix values */ 3400b51a4376SLisandro Dalcin for (i=0; i<m; i++) { 3401b51a4376SLisandro Dalcin PetscInt row = i, s = rowidxs[i], e = rowidxs[i+1]; 34029566063dSJacob Faibussowitsch PetscCall((*mat->ops->setvalues)(mat,1,&row,e-s,colidxs+s,matvals+s,INSERT_VALUES)); 3403b51a4376SLisandro Dalcin } 3404b51a4376SLisandro Dalcin 34059566063dSJacob Faibussowitsch PetscCall(PetscFree(rowidxs)); 34069566063dSJacob Faibussowitsch PetscCall(PetscFree2(colidxs,matvals)); 34079566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat,MAT_FINAL_ASSEMBLY)); 34089566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat,MAT_FINAL_ASSEMBLY)); 3409b51a4376SLisandro Dalcin PetscFunctionReturn(0); 3410b51a4376SLisandro Dalcin } 3411b51a4376SLisandro Dalcin 3412b51a4376SLisandro Dalcin PetscErrorCode MatLoad_SeqBAIJ(Mat mat,PetscViewer viewer) 3413b51a4376SLisandro Dalcin { 34147f489da9SVaclav Hapla PetscBool isbinary; 3415f501eaabSShri Abhyankar 3416f501eaabSShri Abhyankar PetscFunctionBegin; 34179566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary)); 34185f80ce2aSJacob Faibussowitsch PetscCheck(isbinary,PetscObjectComm((PetscObject)viewer),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)mat)->type_name); 34199566063dSJacob Faibussowitsch PetscCall(MatLoad_SeqBAIJ_Binary(mat,viewer)); 3420f501eaabSShri Abhyankar PetscFunctionReturn(0); 3421f501eaabSShri Abhyankar } 3422f501eaabSShri Abhyankar 3423273d9f13SBarry Smith /*@C 3424273d9f13SBarry Smith MatCreateSeqBAIJ - Creates a sparse matrix in block AIJ (block 3425273d9f13SBarry Smith compressed row) format. For good matrix assembly performance the 3426273d9f13SBarry Smith user should preallocate the matrix storage by setting the parameter nz 3427273d9f13SBarry Smith (or the array nnz). By setting these parameters accurately, performance 3428273d9f13SBarry Smith during matrix assembly can be increased by more than a factor of 50. 34292593348eSBarry Smith 3430d083f849SBarry Smith Collective 3431273d9f13SBarry Smith 3432273d9f13SBarry Smith Input Parameters: 3433273d9f13SBarry Smith + comm - MPI communicator, set to PETSC_COMM_SELF 3434bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 3435bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 3436273d9f13SBarry Smith . m - number of rows 3437273d9f13SBarry Smith . n - number of columns 343835d8aa7fSBarry Smith . nz - number of nonzero blocks per block row (same for all rows) 343935d8aa7fSBarry Smith - nnz - array containing the number of nonzero blocks in the various block rows 34400298fd71SBarry Smith (possibly different for each block row) or NULL 3441273d9f13SBarry Smith 3442273d9f13SBarry Smith Output Parameter: 3443273d9f13SBarry Smith . A - the matrix 3444273d9f13SBarry Smith 3445175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 3446f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 3447175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 3448175b88e8SBarry Smith 3449273d9f13SBarry Smith Options Database Keys: 3450a2b725a8SWilliam Gropp + -mat_no_unroll - uses code that does not unroll the loops in the 3451273d9f13SBarry Smith block calculations (much slower) 3452a2b725a8SWilliam Gropp - -mat_block_size - size of the blocks to use 3453273d9f13SBarry Smith 3454273d9f13SBarry Smith Level: intermediate 3455273d9f13SBarry Smith 3456273d9f13SBarry Smith Notes: 3457d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 3458d1be2dadSMatthew Knepley 345949a6f317SBarry Smith If the nnz parameter is given then the nz parameter is ignored 346049a6f317SBarry Smith 346135d8aa7fSBarry Smith A nonzero block is any block that as 1 or more nonzeros in it 346235d8aa7fSBarry Smith 3463273d9f13SBarry Smith The block AIJ format is fully compatible with standard Fortran 77 3464273d9f13SBarry Smith storage. That is, the stored row and column indices can begin at 3465273d9f13SBarry Smith either one (as in Fortran) or zero. See the users' manual for details. 3466273d9f13SBarry Smith 3467273d9f13SBarry Smith Specify the preallocated storage with either nz or nnz (not both). 34680298fd71SBarry Smith Set nz=PETSC_DEFAULT and nnz=NULL for PETSc to control dynamic memory 3469a7f22e61SSatish Balay allocation. See Users-Manual: ch_mat for details. 3470273d9f13SBarry Smith matrices. 3471273d9f13SBarry Smith 347269b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatCreateBAIJ() 3473273d9f13SBarry Smith @*/ 34747087cfbeSBarry Smith PetscErrorCode MatCreateSeqBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt nz,const PetscInt nnz[],Mat *A) 3475273d9f13SBarry Smith { 3476273d9f13SBarry Smith PetscFunctionBegin; 34779566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,A)); 34789566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A,m,n,m,n)); 34799566063dSJacob Faibussowitsch PetscCall(MatSetType(*A,MATSEQBAIJ)); 34809566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(*A,bs,nz,(PetscInt*)nnz)); 3481273d9f13SBarry Smith PetscFunctionReturn(0); 3482273d9f13SBarry Smith } 3483273d9f13SBarry Smith 3484273d9f13SBarry Smith /*@C 3485273d9f13SBarry Smith MatSeqBAIJSetPreallocation - Sets the block size and expected nonzeros 3486273d9f13SBarry Smith per row in the matrix. For good matrix assembly performance the 3487273d9f13SBarry Smith user should preallocate the matrix storage by setting the parameter nz 3488273d9f13SBarry Smith (or the array nnz). By setting these parameters accurately, performance 3489273d9f13SBarry Smith during matrix assembly can be increased by more than a factor of 50. 3490273d9f13SBarry Smith 3491d083f849SBarry Smith Collective 3492273d9f13SBarry Smith 3493273d9f13SBarry Smith Input Parameters: 34941c4f3114SJed Brown + B - the matrix 3495bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 3496bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 3497273d9f13SBarry Smith . nz - number of block nonzeros per block row (same for all rows) 3498273d9f13SBarry Smith - nnz - array containing the number of block nonzeros in the various block rows 34990298fd71SBarry Smith (possibly different for each block row) or NULL 3500273d9f13SBarry Smith 3501273d9f13SBarry Smith Options Database Keys: 3502a2b725a8SWilliam Gropp + -mat_no_unroll - uses code that does not unroll the loops in the 3503273d9f13SBarry Smith block calculations (much slower) 3504a2b725a8SWilliam Gropp - -mat_block_size - size of the blocks to use 3505273d9f13SBarry Smith 3506273d9f13SBarry Smith Level: intermediate 3507273d9f13SBarry Smith 3508273d9f13SBarry Smith Notes: 350949a6f317SBarry Smith If the nnz parameter is given then the nz parameter is ignored 351049a6f317SBarry Smith 3511aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 3512aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 3513aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 3514aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 3515aa95bbe8SBarry Smith 3516273d9f13SBarry Smith The block AIJ format is fully compatible with standard Fortran 77 3517273d9f13SBarry Smith storage. That is, the stored row and column indices can begin at 3518273d9f13SBarry Smith either one (as in Fortran) or zero. See the users' manual for details. 3519273d9f13SBarry Smith 3520273d9f13SBarry Smith Specify the preallocated storage with either nz or nnz (not both). 35210298fd71SBarry Smith Set nz=PETSC_DEFAULT and nnz=NULL for PETSc to control dynamic memory 3522a7f22e61SSatish Balay allocation. See Users-Manual: ch_mat for details. 3523273d9f13SBarry Smith 352469b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatCreateBAIJ(), MatGetInfo() 3525273d9f13SBarry Smith @*/ 35267087cfbeSBarry Smith PetscErrorCode MatSeqBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt nz,const PetscInt nnz[]) 3527273d9f13SBarry Smith { 3528273d9f13SBarry Smith PetscFunctionBegin; 35296ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 35306ba663aaSJed Brown PetscValidType(B,1); 35316ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 3532*cac4c232SBarry Smith PetscTryMethod(B,"MatSeqBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[]),(B,bs,nz,nnz)); 3533273d9f13SBarry Smith PetscFunctionReturn(0); 3534273d9f13SBarry Smith } 3535a1d92eedSBarry Smith 3536725b52f3SLisandro Dalcin /*@C 3537664954b6SBarry Smith MatSeqBAIJSetPreallocationCSR - Creates a sparse parallel matrix in BAIJ format using the given nonzero structure and (optional) numerical values 3538725b52f3SLisandro Dalcin 3539d083f849SBarry Smith Collective 3540725b52f3SLisandro Dalcin 3541725b52f3SLisandro Dalcin Input Parameters: 35421c4f3114SJed Brown + B - the matrix 3543725b52f3SLisandro Dalcin . i - the indices into j for the start of each local row (starts with zero) 3544725b52f3SLisandro Dalcin . j - the column indices for each local row (starts with zero) these must be sorted for each row 3545725b52f3SLisandro Dalcin - v - optional values in the matrix 3546725b52f3SLisandro Dalcin 3547664954b6SBarry Smith Level: advanced 3548725b52f3SLisandro Dalcin 35493adadaf3SJed Brown Notes: 35503adadaf3SJed Brown The order of the entries in values is specified by the MatOption MAT_ROW_ORIENTED. For example, C programs 35513adadaf3SJed Brown may want to use the default MAT_ROW_ORIENTED=PETSC_TRUE and use an array v[nnz][bs][bs] where the second index is 35523adadaf3SJed Brown over rows within a block and the last index is over columns within a block row. Fortran programs will likely set 35533adadaf3SJed Brown MAT_ROW_ORIENTED=PETSC_FALSE and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a 35543adadaf3SJed Brown block column and the second index is over columns within a block. 35553adadaf3SJed Brown 3556664954b6SBarry Smith Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries and usually the numerical values as well 3557664954b6SBarry Smith 3558725b52f3SLisandro Dalcin .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatSeqBAIJSetPreallocation(), MATSEQBAIJ 3559725b52f3SLisandro Dalcin @*/ 35607087cfbeSBarry Smith PetscErrorCode MatSeqBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 3561725b52f3SLisandro Dalcin { 3562725b52f3SLisandro Dalcin PetscFunctionBegin; 35636ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 35646ba663aaSJed Brown PetscValidType(B,1); 35656ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 3566*cac4c232SBarry Smith PetscTryMethod(B,"MatSeqBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v)); 3567725b52f3SLisandro Dalcin PetscFunctionReturn(0); 3568725b52f3SLisandro Dalcin } 3569725b52f3SLisandro Dalcin 3570c75a6043SHong Zhang /*@ 3571dfb205c3SBarry Smith MatCreateSeqBAIJWithArrays - Creates an sequential BAIJ matrix using matrix elements provided by the user. 3572c75a6043SHong Zhang 3573d083f849SBarry Smith Collective 3574c75a6043SHong Zhang 3575c75a6043SHong Zhang Input Parameters: 3576c75a6043SHong Zhang + comm - must be an MPI communicator of size 1 3577c75a6043SHong Zhang . bs - size of block 3578c75a6043SHong Zhang . m - number of rows 3579c75a6043SHong Zhang . n - number of columns 3580483a2f95SBarry Smith . i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of elements in that row block row of the matrix 3581c75a6043SHong Zhang . j - column indices 3582c75a6043SHong Zhang - a - matrix values 3583c75a6043SHong Zhang 3584c75a6043SHong Zhang Output Parameter: 3585c75a6043SHong Zhang . mat - the matrix 3586c75a6043SHong Zhang 3587dfb205c3SBarry Smith Level: advanced 3588c75a6043SHong Zhang 3589c75a6043SHong Zhang Notes: 3590c75a6043SHong Zhang The i, j, and a arrays are not copied by this routine, the user must free these arrays 3591c75a6043SHong Zhang once the matrix is destroyed 3592c75a6043SHong Zhang 3593c75a6043SHong Zhang You cannot set new nonzero locations into this matrix, that will generate an error. 3594c75a6043SHong Zhang 3595c75a6043SHong Zhang The i and j indices are 0 based 3596c75a6043SHong Zhang 3597dfb205c3SBarry Smith When block size is greater than 1 the matrix values must be stored using the BAIJ storage format (see the BAIJ code to determine this). 3598dfb205c3SBarry Smith 35993adadaf3SJed Brown The order of the entries in values is the same as the block compressed sparse row storage format; that is, it is 36003adadaf3SJed Brown the same as a three dimensional array in Fortran values(bs,bs,nnz) that contains the first column of the first 36013adadaf3SJed Brown block, followed by the second column of the first block etc etc. That is, the blocks are contiguous in memory 36023adadaf3SJed Brown with column-major ordering within blocks. 3603dfb205c3SBarry Smith 360469b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateBAIJ(), MatCreateSeqBAIJ() 3605c75a6043SHong Zhang 3606c75a6043SHong Zhang @*/ 3607c3c607ccSBarry Smith PetscErrorCode MatCreateSeqBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt i[],PetscInt j[],PetscScalar a[],Mat *mat) 3608c75a6043SHong Zhang { 3609c75a6043SHong Zhang PetscInt ii; 3610c75a6043SHong Zhang Mat_SeqBAIJ *baij; 3611c75a6043SHong Zhang 3612c75a6043SHong Zhang PetscFunctionBegin; 36135f80ce2aSJacob Faibussowitsch PetscCheck(bs == 1,PETSC_COMM_SELF,PETSC_ERR_SUP,"block size %" PetscInt_FMT " > 1 is not supported yet",bs); 36145f80ce2aSJacob Faibussowitsch if (m > 0) PetscCheck(i[0] == 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0"); 3615c75a6043SHong Zhang 36169566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,mat)); 36179566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat,m,n,m,n)); 36189566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat,MATSEQBAIJ)); 36199566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(*mat,bs,MAT_SKIP_ALLOCATION,NULL)); 3620c75a6043SHong Zhang baij = (Mat_SeqBAIJ*)(*mat)->data; 36219566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m,&baij->imax,m,&baij->ilen)); 36229566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)*mat,2*m*sizeof(PetscInt))); 3623c75a6043SHong Zhang 3624c75a6043SHong Zhang baij->i = i; 3625c75a6043SHong Zhang baij->j = j; 3626c75a6043SHong Zhang baij->a = a; 362726fbe8dcSKarl Rupp 3628c75a6043SHong Zhang baij->singlemalloc = PETSC_FALSE; 3629c75a6043SHong Zhang baij->nonew = -1; /*this indicates that inserting a new value in the matrix that generates a new nonzero is an error*/ 3630e6b907acSBarry Smith baij->free_a = PETSC_FALSE; 3631e6b907acSBarry Smith baij->free_ij = PETSC_FALSE; 3632c75a6043SHong Zhang 3633c75a6043SHong Zhang for (ii=0; ii<m; ii++) { 3634c75a6043SHong Zhang baij->ilen[ii] = baij->imax[ii] = i[ii+1] - i[ii]; 36356bdcaf15SBarry Smith PetscCheck(i[ii+1] - i[ii] >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row length in i (row indices) row = %" PetscInt_FMT " length = %" PetscInt_FMT,ii,i[ii+1] - i[ii]); 3636c75a6043SHong Zhang } 363776bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 3638c75a6043SHong Zhang for (ii=0; ii<baij->i[m]; ii++) { 36396bdcaf15SBarry Smith PetscCheck(j[ii] >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column index at location = %" PetscInt_FMT " index = %" PetscInt_FMT,ii,j[ii]); 36406bdcaf15SBarry Smith PetscCheck(j[ii] <= n - 1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column index to large at location = %" PetscInt_FMT " index = %" PetscInt_FMT,ii,j[ii]); 3641c75a6043SHong Zhang } 364276bd3646SJed Brown } 3643c75a6043SHong Zhang 36449566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*mat,MAT_FINAL_ASSEMBLY)); 36459566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*mat,MAT_FINAL_ASSEMBLY)); 3646c75a6043SHong Zhang PetscFunctionReturn(0); 3647c75a6043SHong Zhang } 3648bdf6f3fcSHong Zhang 3649bdf6f3fcSHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_SeqBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 3650bdf6f3fcSHong Zhang { 36518761c3d6SHong Zhang PetscMPIInt size; 3652bdf6f3fcSHong Zhang 3653bdf6f3fcSHong Zhang PetscFunctionBegin; 36549566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 36558761c3d6SHong Zhang if (size == 1 && scall == MAT_REUSE_MATRIX) { 36569566063dSJacob Faibussowitsch PetscCall(MatCopy(inmat,*outmat,SAME_NONZERO_PATTERN)); 36578761c3d6SHong Zhang } else { 36589566063dSJacob Faibussowitsch PetscCall(MatCreateMPIMatConcatenateSeqMat_MPIBAIJ(comm,inmat,n,scall,outmat)); 36598761c3d6SHong Zhang } 3660bdf6f3fcSHong Zhang PetscFunctionReturn(0); 3661bdf6f3fcSHong Zhang } 3662