19c01be13SBarry Smith 2a5eb4965SSatish Balay #ifdef PETSC_RCS_HEADER 3*cc0fae11SBarry Smith static char vcid[] = "$Id: baij.c,v 1.118 1997/12/01 01:55:02 bsmith Exp bsmith $"; 42593348eSBarry Smith #endif 52593348eSBarry Smith 62593348eSBarry Smith /* 7b6490206SBarry Smith Defines the basic matrix operations for the BAIJ (compressed row) 82593348eSBarry Smith matrix storage format. 92593348eSBarry Smith */ 103369ce9aSBarry Smith 113369ce9aSBarry Smith #include "pinclude/pviewer.h" 123369ce9aSBarry Smith #include "sys.h" 1370f55243SBarry Smith #include "src/mat/impls/baij/seq/baij.h" 141a6a6d98SBarry Smith #include "src/vec/vecimpl.h" 151a6a6d98SBarry Smith #include "src/inline/spops.h" 162593348eSBarry Smith #include "petsc.h" 173b547af2SSatish Balay 182593348eSBarry Smith 19de6a44a3SBarry Smith /* 20de6a44a3SBarry Smith Adds diagonal pointers to sparse matrix structure. 21de6a44a3SBarry Smith */ 22de6a44a3SBarry Smith 235615d1e5SSatish Balay #undef __FUNC__ 245615d1e5SSatish Balay #define __FUNC__ "MatMarkDiag_SeqBAIJ" 25de6a44a3SBarry Smith int MatMarkDiag_SeqBAIJ(Mat A) 26de6a44a3SBarry Smith { 27de6a44a3SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 287fc0212eSBarry Smith int i,j, *diag, m = a->mbs; 29de6a44a3SBarry Smith 303a40ed3dSBarry Smith PetscFunctionBegin; 31de6a44a3SBarry Smith diag = (int *) PetscMalloc( (m+1)*sizeof(int)); CHKPTRQ(diag); 32de6a44a3SBarry Smith PLogObjectMemory(A,(m+1)*sizeof(int)); 337fc0212eSBarry Smith for ( i=0; i<m; i++ ) { 34de6a44a3SBarry Smith for ( j=a->i[i]; j<a->i[i+1]; j++ ) { 35de6a44a3SBarry Smith if (a->j[j] == i) { 36de6a44a3SBarry Smith diag[i] = j; 37de6a44a3SBarry Smith break; 38de6a44a3SBarry Smith } 39de6a44a3SBarry Smith } 40de6a44a3SBarry Smith } 41de6a44a3SBarry Smith a->diag = diag; 423a40ed3dSBarry Smith PetscFunctionReturn(0); 43de6a44a3SBarry Smith } 442593348eSBarry Smith 452593348eSBarry Smith 463b2fbd54SBarry Smith extern int MatToSymmetricIJ_SeqAIJ(int,int*,int*,int,int,int**,int**); 473b2fbd54SBarry Smith 485615d1e5SSatish Balay #undef __FUNC__ 495615d1e5SSatish Balay #define __FUNC__ "MatGetRowIJ_SeqBAIJ" 503b2fbd54SBarry Smith static int MatGetRowIJ_SeqBAIJ(Mat A,int oshift,PetscTruth symmetric,int *nn,int **ia,int **ja, 513b2fbd54SBarry Smith PetscTruth *done) 523b2fbd54SBarry Smith { 533b2fbd54SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 543b2fbd54SBarry Smith int ierr, n = a->mbs,i; 553b2fbd54SBarry Smith 563a40ed3dSBarry Smith PetscFunctionBegin; 573b2fbd54SBarry Smith *nn = n; 583a40ed3dSBarry Smith if (!ia) PetscFunctionReturn(0); 593b2fbd54SBarry Smith if (symmetric) { 603b2fbd54SBarry Smith ierr = MatToSymmetricIJ_SeqAIJ(n,a->i,a->j,0,oshift,ia,ja);CHKERRQ(ierr); 613b2fbd54SBarry Smith } else if (oshift == 1) { 623b2fbd54SBarry Smith /* temporarily add 1 to i and j indices */ 633b2fbd54SBarry Smith int nz = a->i[n] + 1; 643b2fbd54SBarry Smith for ( i=0; i<nz; i++ ) a->j[i]++; 653b2fbd54SBarry Smith for ( i=0; i<n+1; i++ ) a->i[i]++; 663b2fbd54SBarry Smith *ia = a->i; *ja = a->j; 673b2fbd54SBarry Smith } else { 683b2fbd54SBarry Smith *ia = a->i; *ja = a->j; 693b2fbd54SBarry Smith } 703b2fbd54SBarry Smith 713a40ed3dSBarry Smith PetscFunctionReturn(0); 723b2fbd54SBarry Smith } 733b2fbd54SBarry Smith 745615d1e5SSatish Balay #undef __FUNC__ 75d4bb536fSBarry Smith #define __FUNC__ "MatRestoreRowIJ_SeqBAIJ" 763b2fbd54SBarry Smith static int MatRestoreRowIJ_SeqBAIJ(Mat A,int oshift,PetscTruth symmetric,int *nn,int **ia,int **ja, 773b2fbd54SBarry Smith PetscTruth *done) 783b2fbd54SBarry Smith { 793b2fbd54SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 803b2fbd54SBarry Smith int i,n = a->mbs; 813b2fbd54SBarry Smith 823a40ed3dSBarry Smith PetscFunctionBegin; 833a40ed3dSBarry Smith if (!ia) PetscFunctionReturn(0); 843b2fbd54SBarry Smith if (symmetric) { 853b2fbd54SBarry Smith PetscFree(*ia); 863b2fbd54SBarry Smith PetscFree(*ja); 87af5da2bfSBarry Smith } else if (oshift == 1) { 883b2fbd54SBarry Smith int nz = a->i[n]; 893b2fbd54SBarry Smith for ( i=0; i<nz; i++ ) a->j[i]--; 903b2fbd54SBarry Smith for ( i=0; i<n+1; i++ ) a->i[i]--; 913b2fbd54SBarry Smith } 923a40ed3dSBarry Smith PetscFunctionReturn(0); 933b2fbd54SBarry Smith } 943b2fbd54SBarry Smith 953b2fbd54SBarry Smith 965615d1e5SSatish Balay #undef __FUNC__ 97d4bb536fSBarry Smith #define __FUNC__ "MatView_SeqBAIJ_Binary" 98b6490206SBarry Smith static int MatView_SeqBAIJ_Binary(Mat A,Viewer viewer) 992593348eSBarry Smith { 100b6490206SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 1019df24120SSatish Balay int i, fd, *col_lens, ierr, bs = a->bs,count,*jj,j,k,l,bs2=a->bs2; 102b6490206SBarry Smith Scalar *aa; 1032593348eSBarry Smith 1043a40ed3dSBarry Smith PetscFunctionBegin; 10590ace30eSBarry Smith ierr = ViewerBinaryGetDescriptor(viewer,&fd); CHKERRQ(ierr); 1062593348eSBarry Smith col_lens = (int *) PetscMalloc((4+a->m)*sizeof(int));CHKPTRQ(col_lens); 1072593348eSBarry Smith col_lens[0] = MAT_COOKIE; 1083b2fbd54SBarry Smith 1092593348eSBarry Smith col_lens[1] = a->m; 1102593348eSBarry Smith col_lens[2] = a->n; 1117e67e3f9SSatish Balay col_lens[3] = a->nz*bs2; 1122593348eSBarry Smith 1132593348eSBarry Smith /* store lengths of each row and write (including header) to file */ 114b6490206SBarry Smith count = 0; 115b6490206SBarry Smith for ( i=0; i<a->mbs; i++ ) { 116b6490206SBarry Smith for ( j=0; j<bs; j++ ) { 117b6490206SBarry Smith col_lens[4+count++] = bs*(a->i[i+1] - a->i[i]); 118b6490206SBarry Smith } 1192593348eSBarry Smith } 1200752156aSBarry Smith ierr = PetscBinaryWrite(fd,col_lens,4+a->m,PETSC_INT,1); CHKERRQ(ierr); 1212593348eSBarry Smith PetscFree(col_lens); 1222593348eSBarry Smith 1232593348eSBarry Smith /* store column indices (zero start index) */ 12466963ce1SSatish Balay jj = (int *) PetscMalloc( (a->nz+1)*bs2*sizeof(int) ); CHKPTRQ(jj); 125b6490206SBarry Smith count = 0; 126b6490206SBarry Smith for ( i=0; i<a->mbs; i++ ) { 127b6490206SBarry Smith for ( j=0; j<bs; j++ ) { 128b6490206SBarry Smith for ( k=a->i[i]; k<a->i[i+1]; k++ ) { 129b6490206SBarry Smith for ( l=0; l<bs; l++ ) { 130b6490206SBarry Smith jj[count++] = bs*a->j[k] + l; 1312593348eSBarry Smith } 1322593348eSBarry Smith } 133b6490206SBarry Smith } 134b6490206SBarry Smith } 1350752156aSBarry Smith ierr = PetscBinaryWrite(fd,jj,bs2*a->nz,PETSC_INT,0); CHKERRQ(ierr); 136b6490206SBarry Smith PetscFree(jj); 1372593348eSBarry Smith 1382593348eSBarry Smith /* store nonzero values */ 13966963ce1SSatish Balay aa = (Scalar *) PetscMalloc((a->nz+1)*bs2*sizeof(Scalar)); CHKPTRQ(aa); 140b6490206SBarry Smith count = 0; 141b6490206SBarry Smith for ( i=0; i<a->mbs; i++ ) { 142b6490206SBarry Smith for ( j=0; j<bs; j++ ) { 143b6490206SBarry Smith for ( k=a->i[i]; k<a->i[i+1]; k++ ) { 144b6490206SBarry Smith for ( l=0; l<bs; l++ ) { 1457e67e3f9SSatish Balay aa[count++] = a->a[bs2*k + l*bs + j]; 146b6490206SBarry Smith } 147b6490206SBarry Smith } 148b6490206SBarry Smith } 149b6490206SBarry Smith } 1500752156aSBarry Smith ierr = PetscBinaryWrite(fd,aa,bs2*a->nz,PETSC_SCALAR,0); CHKERRQ(ierr); 151b6490206SBarry Smith PetscFree(aa); 1523a40ed3dSBarry Smith PetscFunctionReturn(0); 1532593348eSBarry Smith } 1542593348eSBarry Smith 1555615d1e5SSatish Balay #undef __FUNC__ 156d4bb536fSBarry Smith #define __FUNC__ "MatView_SeqBAIJ_ASCII" 157b6490206SBarry Smith static int MatView_SeqBAIJ_ASCII(Mat A,Viewer viewer) 1582593348eSBarry Smith { 159b6490206SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 1609df24120SSatish Balay int ierr, i,j,format,bs = a->bs,k,l,bs2=a->bs2; 1612593348eSBarry Smith FILE *fd; 1622593348eSBarry Smith char *outputname; 1632593348eSBarry Smith 1643a40ed3dSBarry Smith PetscFunctionBegin; 16590ace30eSBarry Smith ierr = ViewerASCIIGetPointer(viewer,&fd); CHKERRQ(ierr); 1662593348eSBarry Smith ierr = ViewerFileGetOutputname_Private(viewer,&outputname);CHKERRQ(ierr); 16790ace30eSBarry Smith ierr = ViewerGetFormat(viewer,&format); 168639f9d9dSBarry Smith if (format == VIEWER_FORMAT_ASCII_INFO || format == VIEWER_FORMAT_ASCII_INFO_LONG) { 1697ddc982cSLois Curfman McInnes fprintf(fd," block size is %d\n",bs); 1702593348eSBarry Smith } 171639f9d9dSBarry Smith else if (format == VIEWER_FORMAT_ASCII_MATLAB) { 172a8c6a408SBarry Smith SETERRQ(PETSC_ERR_SUP,0,"Matlab format not supported"); 1732593348eSBarry Smith } 174639f9d9dSBarry Smith else if (format == VIEWER_FORMAT_ASCII_COMMON) { 17544cd7ae7SLois Curfman McInnes for ( i=0; i<a->mbs; i++ ) { 17644cd7ae7SLois Curfman McInnes for ( j=0; j<bs; j++ ) { 17744cd7ae7SLois Curfman McInnes fprintf(fd,"row %d:",i*bs+j); 17844cd7ae7SLois Curfman McInnes for ( k=a->i[i]; k<a->i[i+1]; k++ ) { 17944cd7ae7SLois Curfman McInnes for ( l=0; l<bs; l++ ) { 1803a40ed3dSBarry Smith #if defined(USE_PETSC_COMPLEX) 181766eeae4SLois Curfman McInnes if (imag(a->a[bs2*k + l*bs + j]) > 0.0 && real(a->a[bs2*k + l*bs + j]) != 0.0) 18244cd7ae7SLois Curfman McInnes fprintf(fd," %d %g + %g i",bs*a->j[k]+l, 18344cd7ae7SLois Curfman McInnes real(a->a[bs2*k + l*bs + j]),imag(a->a[bs2*k + l*bs + j])); 184766eeae4SLois Curfman McInnes else if (imag(a->a[bs2*k + l*bs + j]) < 0.0 && real(a->a[bs2*k + l*bs + j]) != 0.0) 185766eeae4SLois Curfman McInnes fprintf(fd," %d %g - %g i",bs*a->j[k]+l, 186766eeae4SLois Curfman McInnes real(a->a[bs2*k + l*bs + j]),-imag(a->a[bs2*k + l*bs + j])); 18744cd7ae7SLois Curfman McInnes else if (real(a->a[bs2*k + l*bs + j]) != 0.0) 18844cd7ae7SLois Curfman McInnes fprintf(fd," %d %g ",bs*a->j[k]+l,real(a->a[bs2*k + l*bs + j])); 18944cd7ae7SLois Curfman McInnes #else 19044cd7ae7SLois Curfman McInnes if (a->a[bs2*k + l*bs + j] != 0.0) 19144cd7ae7SLois Curfman McInnes fprintf(fd," %d %g ",bs*a->j[k]+l,a->a[bs2*k + l*bs + j]); 19244cd7ae7SLois Curfman McInnes #endif 19344cd7ae7SLois Curfman McInnes } 19444cd7ae7SLois Curfman McInnes } 19544cd7ae7SLois Curfman McInnes fprintf(fd,"\n"); 19644cd7ae7SLois Curfman McInnes } 19744cd7ae7SLois Curfman McInnes } 19844cd7ae7SLois Curfman McInnes } 1992593348eSBarry Smith else { 200b6490206SBarry Smith for ( i=0; i<a->mbs; i++ ) { 201b6490206SBarry Smith for ( j=0; j<bs; j++ ) { 202b6490206SBarry Smith fprintf(fd,"row %d:",i*bs+j); 203b6490206SBarry Smith for ( k=a->i[i]; k<a->i[i+1]; k++ ) { 204b6490206SBarry Smith for ( l=0; l<bs; l++ ) { 2053a40ed3dSBarry Smith #if defined(USE_PETSC_COMPLEX) 206766eeae4SLois Curfman McInnes if (imag(a->a[bs2*k + l*bs + j]) > 0.0) { 20788685aaeSLois Curfman McInnes fprintf(fd," %d %g + %g i",bs*a->j[k]+l, 2087e67e3f9SSatish Balay real(a->a[bs2*k + l*bs + j]),imag(a->a[bs2*k + l*bs + j])); 20988685aaeSLois Curfman McInnes } 210766eeae4SLois Curfman McInnes else if (imag(a->a[bs2*k + l*bs + j]) < 0.0) { 211766eeae4SLois Curfman McInnes fprintf(fd," %d %g - %g i",bs*a->j[k]+l, 212766eeae4SLois Curfman McInnes real(a->a[bs2*k + l*bs + j]),-imag(a->a[bs2*k + l*bs + j])); 213766eeae4SLois Curfman McInnes } 21488685aaeSLois Curfman McInnes else { 2157e67e3f9SSatish Balay fprintf(fd," %d %g ",bs*a->j[k]+l,real(a->a[bs2*k + l*bs + j])); 21688685aaeSLois Curfman McInnes } 21788685aaeSLois Curfman McInnes #else 2187e67e3f9SSatish Balay fprintf(fd," %d %g ",bs*a->j[k]+l,a->a[bs2*k + l*bs + j]); 21988685aaeSLois Curfman McInnes #endif 2202593348eSBarry Smith } 2212593348eSBarry Smith } 2222593348eSBarry Smith fprintf(fd,"\n"); 2232593348eSBarry Smith } 2242593348eSBarry Smith } 225b6490206SBarry Smith } 2262593348eSBarry Smith fflush(fd); 2273a40ed3dSBarry Smith PetscFunctionReturn(0); 2282593348eSBarry Smith } 2292593348eSBarry Smith 2305615d1e5SSatish Balay #undef __FUNC__ 231d4bb536fSBarry Smith #define __FUNC__ "MatView_SeqBAIJ_Draw" 2323270192aSSatish Balay static int MatView_SeqBAIJ_Draw(Mat A,Viewer viewer) 2333270192aSSatish Balay { 2343270192aSSatish Balay Mat_SeqBAIJ *a=(Mat_SeqBAIJ *) A->data; 2353270192aSSatish Balay int row,ierr,i,j,k,l,mbs=a->mbs,pause,color,bs=a->bs,bs2=a->bs2; 2363270192aSSatish Balay double xl,yl,xr,yr,w,h,xc,yc,scale = 1.0,x_l,x_r,y_l,y_r; 2373270192aSSatish Balay Scalar *aa; 2383270192aSSatish Balay Draw draw; 2393270192aSSatish Balay DrawButton button; 2403270192aSSatish Balay PetscTruth isnull; 2413270192aSSatish Balay 2423a40ed3dSBarry Smith PetscFunctionBegin; 2433a40ed3dSBarry Smith ierr = ViewerDrawGetDraw(viewer,&draw);CHKERRQ(ierr); 2443a40ed3dSBarry Smith ierr = DrawIsNull(draw,&isnull); CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 2453270192aSSatish Balay 2463270192aSSatish Balay xr = a->n; yr = a->m; h = yr/10.0; w = xr/10.0; 2473270192aSSatish Balay xr += w; yr += h; xl = -w; yl = -h; 2483270192aSSatish Balay ierr = DrawSetCoordinates(draw,xl,yl,xr,yr); CHKERRQ(ierr); 2493270192aSSatish Balay /* loop over matrix elements drawing boxes */ 2503270192aSSatish Balay color = DRAW_BLUE; 2513270192aSSatish Balay for ( i=0,row=0; i<mbs; i++,row+=bs ) { 2523270192aSSatish Balay for ( j=a->i[i]; j<a->i[i+1]; j++ ) { 2533270192aSSatish Balay y_l = a->m - row - 1.0; y_r = y_l + 1.0; 2543270192aSSatish Balay x_l = a->j[j]*bs; x_r = x_l + 1.0; 2553270192aSSatish Balay aa = a->a + j*bs2; 2563270192aSSatish Balay for ( k=0; k<bs; k++ ) { 2573270192aSSatish Balay for ( l=0; l<bs; l++ ) { 2583270192aSSatish Balay if (PetscReal(*aa++) >= 0.) continue; 259b34f160eSSatish Balay DrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color); 2603270192aSSatish Balay } 2613270192aSSatish Balay } 2623270192aSSatish Balay } 2633270192aSSatish Balay } 2643270192aSSatish Balay color = DRAW_CYAN; 2653270192aSSatish Balay for ( i=0,row=0; i<mbs; i++,row+=bs ) { 2663270192aSSatish Balay for ( j=a->i[i]; j<a->i[i+1]; j++ ) { 2673270192aSSatish Balay y_l = a->m - row - 1.0; y_r = y_l + 1.0; 2683270192aSSatish Balay x_l = a->j[j]*bs; x_r = x_l + 1.0; 2693270192aSSatish Balay aa = a->a + j*bs2; 2703270192aSSatish Balay for ( k=0; k<bs; k++ ) { 2713270192aSSatish Balay for ( l=0; l<bs; l++ ) { 2723270192aSSatish Balay if (PetscReal(*aa++) != 0.) continue; 273b34f160eSSatish Balay DrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color); 2743270192aSSatish Balay } 2753270192aSSatish Balay } 2763270192aSSatish Balay } 2773270192aSSatish Balay } 2783270192aSSatish Balay 2793270192aSSatish Balay color = DRAW_RED; 2803270192aSSatish Balay for ( i=0,row=0; i<mbs; i++,row+=bs ) { 2813270192aSSatish Balay for ( j=a->i[i]; j<a->i[i+1]; j++ ) { 2823270192aSSatish Balay y_l = a->m - row - 1.0; y_r = y_l + 1.0; 2833270192aSSatish Balay x_l = a->j[j]*bs; x_r = x_l + 1.0; 2843270192aSSatish Balay aa = a->a + j*bs2; 2853270192aSSatish Balay for ( k=0; k<bs; k++ ) { 2863270192aSSatish Balay for ( l=0; l<bs; l++ ) { 2873270192aSSatish Balay if (PetscReal(*aa++) <= 0.) continue; 288b34f160eSSatish Balay DrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color); 2893270192aSSatish Balay } 2903270192aSSatish Balay } 2913270192aSSatish Balay } 2923270192aSSatish Balay } 2933270192aSSatish Balay 29455843e3eSBarry Smith DrawSynchronizedFlush(draw); 2953270192aSSatish Balay DrawGetPause(draw,&pause); 2963a40ed3dSBarry Smith if (pause >= 0) { PetscSleep(pause); PetscFunctionReturn(0);} 2973270192aSSatish Balay 2983270192aSSatish Balay /* allow the matrix to zoom or shrink */ 29955843e3eSBarry Smith ierr = DrawSynchronizedGetMouseButton(draw,&button,&xc,&yc,0,0); 3003270192aSSatish Balay while (button != BUTTON_RIGHT) { 30155843e3eSBarry Smith DrawSynchronizedClear(draw); 3023270192aSSatish Balay if (button == BUTTON_LEFT) scale = .5; 3033270192aSSatish Balay else if (button == BUTTON_CENTER) scale = 2.; 3043270192aSSatish Balay xl = scale*(xl + w - xc) + xc - w*scale; 3053270192aSSatish Balay xr = scale*(xr - w - xc) + xc + w*scale; 3063270192aSSatish Balay yl = scale*(yl + h - yc) + yc - h*scale; 3073270192aSSatish Balay yr = scale*(yr - h - yc) + yc + h*scale; 3083270192aSSatish Balay w *= scale; h *= scale; 3093270192aSSatish Balay ierr = DrawSetCoordinates(draw,xl,yl,xr,yr); CHKERRQ(ierr); 3103270192aSSatish Balay color = DRAW_BLUE; 3113270192aSSatish Balay for ( i=0,row=0; i<mbs; i++,row+=bs ) { 3123270192aSSatish Balay for ( j=a->i[i]; j<a->i[i+1]; j++ ) { 3133270192aSSatish Balay y_l = a->m - row - 1.0; y_r = y_l + 1.0; 3143270192aSSatish Balay x_l = a->j[j]*bs; x_r = x_l + 1.0; 3153270192aSSatish Balay aa = a->a + j*bs2; 3163270192aSSatish Balay for ( k=0; k<bs; k++ ) { 3173270192aSSatish Balay for ( l=0; l<bs; l++ ) { 3183270192aSSatish Balay if (PetscReal(*aa++) >= 0.) continue; 319b34f160eSSatish Balay DrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color); 3203270192aSSatish Balay } 3213270192aSSatish Balay } 3223270192aSSatish Balay } 3233270192aSSatish Balay } 3243270192aSSatish Balay color = DRAW_CYAN; 3253270192aSSatish Balay for ( i=0,row=0; i<mbs; i++,row+=bs ) { 3263270192aSSatish Balay for ( j=a->i[i]; j<a->i[i+1]; j++ ) { 3273270192aSSatish Balay y_l = a->m - row - 1.0; y_r = y_l + 1.0; 3283270192aSSatish Balay x_l = a->j[j]*bs; x_r = x_l + 1.0; 3293270192aSSatish Balay aa = a->a + j*bs2; 3303270192aSSatish Balay for ( k=0; k<bs; k++ ) { 3313270192aSSatish Balay for ( l=0; l<bs; l++ ) { 3323270192aSSatish Balay if (PetscReal(*aa++) != 0.) continue; 333b34f160eSSatish Balay DrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color); 3343270192aSSatish Balay } 3353270192aSSatish Balay } 3363270192aSSatish Balay } 3373270192aSSatish Balay } 3383270192aSSatish Balay 3393270192aSSatish Balay color = DRAW_RED; 3403270192aSSatish Balay for ( i=0,row=0; i<mbs; i++,row+=bs ) { 3413270192aSSatish Balay for ( j=a->i[i]; j<a->i[i+1]; j++ ) { 3423270192aSSatish Balay y_l = a->m - row - 1.0; y_r = y_l + 1.0; 3433270192aSSatish Balay x_l = a->j[j]*bs; x_r = x_l + 1.0; 3443270192aSSatish Balay aa = a->a + j*bs2; 3453270192aSSatish Balay for ( k=0; k<bs; k++ ) { 3463270192aSSatish Balay for ( l=0; l<bs; l++ ) { 3473270192aSSatish Balay if (PetscReal(*aa++) <= 0.) continue; 348b34f160eSSatish Balay DrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color); 3493270192aSSatish Balay } 3503270192aSSatish Balay } 3513270192aSSatish Balay } 3523270192aSSatish Balay } 35355843e3eSBarry Smith ierr = DrawSynchronizedGetMouseButton(draw,&button,&xc,&yc,0,0); 3543270192aSSatish Balay } 3553a40ed3dSBarry Smith PetscFunctionReturn(0); 3563270192aSSatish Balay } 3573270192aSSatish Balay 3585615d1e5SSatish Balay #undef __FUNC__ 359d4bb536fSBarry Smith #define __FUNC__ "MatView_SeqBAIJ" 3608f6be9afSLois Curfman McInnes int MatView_SeqBAIJ(PetscObject obj,Viewer viewer) 3612593348eSBarry Smith { 3622593348eSBarry Smith Mat A = (Mat) obj; 36319bcc07fSBarry Smith ViewerType vtype; 36419bcc07fSBarry Smith int ierr; 3652593348eSBarry Smith 3663a40ed3dSBarry Smith PetscFunctionBegin; 36719bcc07fSBarry Smith ierr = ViewerGetType(viewer,&vtype); CHKERRQ(ierr); 36819bcc07fSBarry Smith if (vtype == MATLAB_VIEWER) { 369a8c6a408SBarry Smith SETERRQ(PETSC_ERR_SUP,0,"Matlab viewer not supported"); 3703a40ed3dSBarry Smith } else if (vtype == ASCII_FILE_VIEWER || vtype == ASCII_FILES_VIEWER){ 3713a40ed3dSBarry Smith ierr = MatView_SeqBAIJ_ASCII(A,viewer);CHKERRQ(ierr); 3723a40ed3dSBarry Smith } else if (vtype == BINARY_FILE_VIEWER) { 3733a40ed3dSBarry Smith ierr = MatView_SeqBAIJ_Binary(A,viewer);CHKERRQ(ierr); 3743a40ed3dSBarry Smith } else if (vtype == DRAW_VIEWER) { 3753a40ed3dSBarry Smith ierr = MatView_SeqBAIJ_Draw(A,viewer);CHKERRQ(ierr); 3762593348eSBarry Smith } 3773a40ed3dSBarry Smith PetscFunctionReturn(0); 3782593348eSBarry Smith } 379b6490206SBarry Smith 380119a934aSSatish Balay #define CHUNKSIZE 10 381cd0e1443SSatish Balay 3825615d1e5SSatish Balay #undef __FUNC__ 3835615d1e5SSatish Balay #define __FUNC__ "MatSetValues_SeqBAIJ" 384639f9d9dSBarry Smith int MatSetValues_SeqBAIJ(Mat A,int m,int *im,int n,int *in,Scalar *v,InsertMode is) 385cd0e1443SSatish Balay { 386cd0e1443SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 387cd0e1443SSatish Balay int *rp,k,low,high,t,ii,row,nrow,i,col,l,rmax,N,sorted=a->sorted; 388cd0e1443SSatish Balay int *imax=a->imax,*ai=a->i,*ailen=a->ilen,roworiented=a->roworiented; 389a7c10996SSatish Balay int *aj=a->j,nonew=a->nonew,bs=a->bs,brow,bcol; 3909df24120SSatish Balay int ridx,cidx,bs2=a->bs2; 391cd0e1443SSatish Balay Scalar *ap,value,*aa=a->a,*bap; 392cd0e1443SSatish Balay 3933a40ed3dSBarry Smith PetscFunctionBegin; 394cd0e1443SSatish Balay for ( k=0; k<m; k++ ) { /* loop over added rows */ 395cd0e1443SSatish Balay row = im[k]; brow = row/bs; 3963a40ed3dSBarry Smith #if defined(USE_PETSC_BOPT_g) 397a8c6a408SBarry Smith if (row < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative row"); 398a8c6a408SBarry Smith if (row >= a->m) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large"); 3993b2fbd54SBarry Smith #endif 4002c3acbe9SBarry Smith rp = aj + ai[brow]; 4012c3acbe9SBarry Smith ap = aa + bs2*ai[brow]; 4022c3acbe9SBarry Smith rmax = imax[brow]; 4032c3acbe9SBarry Smith nrow = ailen[brow]; 404cd0e1443SSatish Balay low = 0; 405cd0e1443SSatish Balay for ( l=0; l<n; l++ ) { /* loop over added columns */ 4063a40ed3dSBarry Smith #if defined(USE_PETSC_BOPT_g) 407a8c6a408SBarry Smith if (in[l] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative column"); 408a8c6a408SBarry Smith if (in[l] >= a->n) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Column too large"); 4093b2fbd54SBarry Smith #endif 410a7c10996SSatish Balay col = in[l]; bcol = col/bs; 411cd0e1443SSatish Balay ridx = row % bs; cidx = col % bs; 412cd0e1443SSatish Balay if (roworiented) { 413cd0e1443SSatish Balay value = *v++; 4143a40ed3dSBarry Smith } else { 415cd0e1443SSatish Balay value = v[k + l*m]; 416cd0e1443SSatish Balay } 417cd0e1443SSatish Balay if (!sorted) low = 0; high = nrow; 4182c3acbe9SBarry Smith while (high-low > 7) { 419cd0e1443SSatish Balay t = (low+high)/2; 420cd0e1443SSatish Balay if (rp[t] > bcol) high = t; 421cd0e1443SSatish Balay else low = t; 422cd0e1443SSatish Balay } 423cd0e1443SSatish Balay for ( i=low; i<high; i++ ) { 424cd0e1443SSatish Balay if (rp[i] > bcol) break; 425cd0e1443SSatish Balay if (rp[i] == bcol) { 4267e67e3f9SSatish Balay bap = ap + bs2*i + bs*cidx + ridx; 427cd0e1443SSatish Balay if (is == ADD_VALUES) *bap += value; 428cd0e1443SSatish Balay else *bap = value; 429f1241b54SBarry Smith goto noinsert1; 430cd0e1443SSatish Balay } 431cd0e1443SSatish Balay } 432c2653b3dSLois Curfman McInnes if (nonew == 1) goto noinsert1; 433a8c6a408SBarry Smith else if (nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero in the matrix"); 434cd0e1443SSatish Balay if (nrow >= rmax) { 435cd0e1443SSatish Balay /* there is no extra room in row, therefore enlarge */ 436cd0e1443SSatish Balay int new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; 437cd0e1443SSatish Balay Scalar *new_a; 438cd0e1443SSatish Balay 439a8c6a408SBarry Smith if (nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero in the matrix"); 44096854ed6SLois Curfman McInnes 44196854ed6SLois Curfman McInnes /* Malloc new storage space */ 4427e67e3f9SSatish Balay len = new_nz*(sizeof(int)+bs2*sizeof(Scalar))+(a->mbs+1)*sizeof(int); 443cd0e1443SSatish Balay new_a = (Scalar *) PetscMalloc( len ); CHKPTRQ(new_a); 4447e67e3f9SSatish Balay new_j = (int *) (new_a + bs2*new_nz); 445cd0e1443SSatish Balay new_i = new_j + new_nz; 446cd0e1443SSatish Balay 447cd0e1443SSatish Balay /* copy over old data into new slots */ 448cd0e1443SSatish Balay for ( ii=0; ii<brow+1; ii++ ) {new_i[ii] = ai[ii];} 4497e67e3f9SSatish Balay for ( ii=brow+1; ii<a->mbs+1; ii++ ) {new_i[ii] = ai[ii]+CHUNKSIZE;} 450a7c10996SSatish Balay PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(int)); 451a7c10996SSatish Balay len = (new_nz - CHUNKSIZE - ai[brow] - nrow); 452a7c10996SSatish Balay PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow, 453cd0e1443SSatish Balay len*sizeof(int)); 454a7c10996SSatish Balay PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(Scalar)); 455a7c10996SSatish Balay PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(Scalar)); 456a7c10996SSatish Balay PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), 457a7c10996SSatish Balay aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(Scalar)); 458cd0e1443SSatish Balay /* free up old matrix storage */ 459cd0e1443SSatish Balay PetscFree(a->a); 460cd0e1443SSatish Balay if (!a->singlemalloc) {PetscFree(a->i);PetscFree(a->j);} 461cd0e1443SSatish Balay aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j; 462cd0e1443SSatish Balay a->singlemalloc = 1; 463cd0e1443SSatish Balay 464a7c10996SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; 465cd0e1443SSatish Balay rmax = imax[brow] = imax[brow] + CHUNKSIZE; 4667e67e3f9SSatish Balay PLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(Scalar))); 46718e7b8e4SLois Curfman McInnes a->maxnz += bs2*CHUNKSIZE; 468cd0e1443SSatish Balay a->reallocs++; 469119a934aSSatish Balay a->nz++; 470cd0e1443SSatish Balay } 4717e67e3f9SSatish Balay N = nrow++ - 1; 472cd0e1443SSatish Balay /* shift up all the later entries in this row */ 473cd0e1443SSatish Balay for ( ii=N; ii>=i; ii-- ) { 474cd0e1443SSatish Balay rp[ii+1] = rp[ii]; 4757e67e3f9SSatish Balay PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(Scalar)); 476cd0e1443SSatish Balay } 4777e67e3f9SSatish Balay if (N>=i) PetscMemzero(ap+bs2*i,bs2*sizeof(Scalar)); 478cd0e1443SSatish Balay rp[i] = bcol; 4797e67e3f9SSatish Balay ap[bs2*i + bs*cidx + ridx] = value; 480f1241b54SBarry Smith noinsert1:; 481cd0e1443SSatish Balay low = i; 482cd0e1443SSatish Balay } 483cd0e1443SSatish Balay ailen[brow] = nrow; 484cd0e1443SSatish Balay } 4853a40ed3dSBarry Smith PetscFunctionReturn(0); 486cd0e1443SSatish Balay } 487cd0e1443SSatish Balay 4885615d1e5SSatish Balay #undef __FUNC__ 48905a5f48eSSatish Balay #define __FUNC__ "MatSetValuesBlocked_SeqBAIJ" 49092c4ed94SBarry Smith int MatSetValuesBlocked_SeqBAIJ(Mat A,int m,int *im,int n,int *in,Scalar *v,InsertMode is) 49192c4ed94SBarry Smith { 49292c4ed94SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 4938a84c255SSatish Balay int *rp,k,low,high,t,ii,jj,row,nrow,i,col,l,rmax,N,sorted=a->sorted; 494dd9472c6SBarry Smith int *imax=a->imax,*ai=a->i,*ailen=a->ilen, roworiented=a->roworiented; 495dd9472c6SBarry Smith int *aj=a->j,nonew=a->nonew,bs2=a->bs2,bs=a->bs,stepval; 4960e324ae4SSatish Balay Scalar *ap,*value=v,*aa=a->a,*bap; 49792c4ed94SBarry Smith 4983a40ed3dSBarry Smith PetscFunctionBegin; 4990e324ae4SSatish Balay if (roworiented) { 5000e324ae4SSatish Balay stepval = (n-1)*bs; 5010e324ae4SSatish Balay } else { 5020e324ae4SSatish Balay stepval = (m-1)*bs; 5030e324ae4SSatish Balay } 50492c4ed94SBarry Smith for ( k=0; k<m; k++ ) { /* loop over added rows */ 50592c4ed94SBarry Smith row = im[k]; 5063a40ed3dSBarry Smith #if defined(USE_PETSC_BOPT_g) 507a8c6a408SBarry Smith if (row < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative row"); 508a8c6a408SBarry Smith if (row >= a->mbs) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large"); 50992c4ed94SBarry Smith #endif 51092c4ed94SBarry Smith rp = aj + ai[row]; 51192c4ed94SBarry Smith ap = aa + bs2*ai[row]; 51292c4ed94SBarry Smith rmax = imax[row]; 51392c4ed94SBarry Smith nrow = ailen[row]; 51492c4ed94SBarry Smith low = 0; 51592c4ed94SBarry Smith for ( l=0; l<n; l++ ) { /* loop over added columns */ 5163a40ed3dSBarry Smith #if defined(USE_PETSC_BOPT_g) 517a8c6a408SBarry Smith if (in[l] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative column"); 518a8c6a408SBarry Smith if (in[l] >= a->nbs) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Column too large"); 51992c4ed94SBarry Smith #endif 52092c4ed94SBarry Smith col = in[l]; 52192c4ed94SBarry Smith if (roworiented) { 5220e324ae4SSatish Balay value = v + k*(stepval+bs)*bs + l*bs; 5230e324ae4SSatish Balay } else { 5240e324ae4SSatish Balay value = v + l*(stepval+bs)*bs + k*bs; 52592c4ed94SBarry Smith } 52692c4ed94SBarry Smith if (!sorted) low = 0; high = nrow; 52792c4ed94SBarry Smith while (high-low > 7) { 52892c4ed94SBarry Smith t = (low+high)/2; 52992c4ed94SBarry Smith if (rp[t] > col) high = t; 53092c4ed94SBarry Smith else low = t; 53192c4ed94SBarry Smith } 53292c4ed94SBarry Smith for ( i=low; i<high; i++ ) { 53392c4ed94SBarry Smith if (rp[i] > col) break; 53492c4ed94SBarry Smith if (rp[i] == col) { 5358a84c255SSatish Balay bap = ap + bs2*i; 5360e324ae4SSatish Balay if (roworiented) { 5378a84c255SSatish Balay if (is == ADD_VALUES) { 538dd9472c6SBarry Smith for ( ii=0; ii<bs; ii++,value+=stepval ) { 539dd9472c6SBarry Smith for (jj=ii; jj<bs2; jj+=bs ) { 5408a84c255SSatish Balay bap[jj] += *value++; 541dd9472c6SBarry Smith } 542dd9472c6SBarry Smith } 5430e324ae4SSatish Balay } else { 544dd9472c6SBarry Smith for ( ii=0; ii<bs; ii++,value+=stepval ) { 545dd9472c6SBarry Smith for (jj=ii; jj<bs2; jj+=bs ) { 5460e324ae4SSatish Balay bap[jj] = *value++; 5478a84c255SSatish Balay } 548dd9472c6SBarry Smith } 549dd9472c6SBarry Smith } 5500e324ae4SSatish Balay } else { 5510e324ae4SSatish Balay if (is == ADD_VALUES) { 552dd9472c6SBarry Smith for ( ii=0; ii<bs; ii++,value+=stepval ) { 553dd9472c6SBarry Smith for (jj=0; jj<bs; jj++ ) { 5540e324ae4SSatish Balay *bap++ += *value++; 555dd9472c6SBarry Smith } 556dd9472c6SBarry Smith } 5570e324ae4SSatish Balay } else { 558dd9472c6SBarry Smith for ( ii=0; ii<bs; ii++,value+=stepval ) { 559dd9472c6SBarry Smith for (jj=0; jj<bs; jj++ ) { 5600e324ae4SSatish Balay *bap++ = *value++; 5610e324ae4SSatish Balay } 5628a84c255SSatish Balay } 563dd9472c6SBarry Smith } 564dd9472c6SBarry Smith } 565f1241b54SBarry Smith goto noinsert2; 56692c4ed94SBarry Smith } 56792c4ed94SBarry Smith } 56889280ab3SLois Curfman McInnes if (nonew == 1) goto noinsert2; 569a8c6a408SBarry Smith else if (nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero in the matrix"); 57092c4ed94SBarry Smith if (nrow >= rmax) { 57192c4ed94SBarry Smith /* there is no extra room in row, therefore enlarge */ 57292c4ed94SBarry Smith int new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; 57392c4ed94SBarry Smith Scalar *new_a; 57492c4ed94SBarry Smith 575a8c6a408SBarry Smith if (nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero in the matrix"); 57689280ab3SLois Curfman McInnes 57792c4ed94SBarry Smith /* malloc new storage space */ 57892c4ed94SBarry Smith len = new_nz*(sizeof(int)+bs2*sizeof(Scalar))+(a->mbs+1)*sizeof(int); 57992c4ed94SBarry Smith new_a = (Scalar *) PetscMalloc( len ); CHKPTRQ(new_a); 58092c4ed94SBarry Smith new_j = (int *) (new_a + bs2*new_nz); 58192c4ed94SBarry Smith new_i = new_j + new_nz; 58292c4ed94SBarry Smith 58392c4ed94SBarry Smith /* copy over old data into new slots */ 58492c4ed94SBarry Smith for ( ii=0; ii<row+1; ii++ ) {new_i[ii] = ai[ii];} 58592c4ed94SBarry Smith for ( ii=row+1; ii<a->mbs+1; ii++ ) {new_i[ii] = ai[ii]+CHUNKSIZE;} 58692c4ed94SBarry Smith PetscMemcpy(new_j,aj,(ai[row]+nrow)*sizeof(int)); 58792c4ed94SBarry Smith len = (new_nz - CHUNKSIZE - ai[row] - nrow); 588dd9472c6SBarry Smith PetscMemcpy(new_j+ai[row]+nrow+CHUNKSIZE,aj+ai[row]+nrow,len*sizeof(int)); 58992c4ed94SBarry Smith PetscMemcpy(new_a,aa,(ai[row]+nrow)*bs2*sizeof(Scalar)); 59092c4ed94SBarry Smith PetscMemzero(new_a+bs2*(ai[row]+nrow),bs2*CHUNKSIZE*sizeof(Scalar)); 591dd9472c6SBarry Smith PetscMemcpy(new_a+bs2*(ai[row]+nrow+CHUNKSIZE),aa+bs2*(ai[row]+nrow),bs2*len*sizeof(Scalar)); 59292c4ed94SBarry Smith /* free up old matrix storage */ 59392c4ed94SBarry Smith PetscFree(a->a); 59492c4ed94SBarry Smith if (!a->singlemalloc) {PetscFree(a->i);PetscFree(a->j);} 59592c4ed94SBarry Smith aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j; 59692c4ed94SBarry Smith a->singlemalloc = 1; 59792c4ed94SBarry Smith 59892c4ed94SBarry Smith rp = aj + ai[row]; ap = aa + bs2*ai[row]; 59992c4ed94SBarry Smith rmax = imax[row] = imax[row] + CHUNKSIZE; 60092c4ed94SBarry Smith PLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(Scalar))); 60192c4ed94SBarry Smith a->maxnz += bs2*CHUNKSIZE; 60292c4ed94SBarry Smith a->reallocs++; 60392c4ed94SBarry Smith a->nz++; 60492c4ed94SBarry Smith } 60592c4ed94SBarry Smith N = nrow++ - 1; 60692c4ed94SBarry Smith /* shift up all the later entries in this row */ 60792c4ed94SBarry Smith for ( ii=N; ii>=i; ii-- ) { 60892c4ed94SBarry Smith rp[ii+1] = rp[ii]; 60992c4ed94SBarry Smith PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(Scalar)); 61092c4ed94SBarry Smith } 61192c4ed94SBarry Smith if (N >= i) PetscMemzero(ap+bs2*i,bs2*sizeof(Scalar)); 61292c4ed94SBarry Smith rp[i] = col; 6138a84c255SSatish Balay bap = ap + bs2*i; 6140e324ae4SSatish Balay if (roworiented) { 615dd9472c6SBarry Smith for ( ii=0; ii<bs; ii++,value+=stepval) { 616dd9472c6SBarry Smith for (jj=ii; jj<bs2; jj+=bs ) { 6170e324ae4SSatish Balay bap[jj] = *value++; 618dd9472c6SBarry Smith } 619dd9472c6SBarry Smith } 6200e324ae4SSatish Balay } else { 621dd9472c6SBarry Smith for ( ii=0; ii<bs; ii++,value+=stepval ) { 622dd9472c6SBarry Smith for (jj=0; jj<bs; jj++ ) { 6230e324ae4SSatish Balay *bap++ = *value++; 6240e324ae4SSatish Balay } 625dd9472c6SBarry Smith } 626dd9472c6SBarry Smith } 627f1241b54SBarry Smith noinsert2:; 62892c4ed94SBarry Smith low = i; 62992c4ed94SBarry Smith } 63092c4ed94SBarry Smith ailen[row] = nrow; 63192c4ed94SBarry Smith } 6323a40ed3dSBarry Smith PetscFunctionReturn(0); 63392c4ed94SBarry Smith } 63492c4ed94SBarry Smith 63592c4ed94SBarry Smith #undef __FUNC__ 636d4bb536fSBarry Smith #define __FUNC__ "MatGetSize_SeqBAIJ" 6378f6be9afSLois Curfman McInnes int MatGetSize_SeqBAIJ(Mat A,int *m,int *n) 6380b824a48SSatish Balay { 6390b824a48SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 6403a40ed3dSBarry Smith 6413a40ed3dSBarry Smith PetscFunctionBegin; 6420752156aSBarry Smith if (m) *m = a->m; 6430752156aSBarry Smith if (n) *n = a->n; 6443a40ed3dSBarry Smith PetscFunctionReturn(0); 6450b824a48SSatish Balay } 6460b824a48SSatish Balay 6475615d1e5SSatish Balay #undef __FUNC__ 648d4bb536fSBarry Smith #define __FUNC__ "MatGetOwnershipRange_SeqBAIJ" 6498f6be9afSLois Curfman McInnes int MatGetOwnershipRange_SeqBAIJ(Mat A,int *m,int *n) 6500b824a48SSatish Balay { 6510b824a48SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 6523a40ed3dSBarry Smith 6533a40ed3dSBarry Smith PetscFunctionBegin; 6540b824a48SSatish Balay *m = 0; *n = a->m; 6553a40ed3dSBarry Smith PetscFunctionReturn(0); 6560b824a48SSatish Balay } 6570b824a48SSatish Balay 6585615d1e5SSatish Balay #undef __FUNC__ 6595615d1e5SSatish Balay #define __FUNC__ "MatGetRow_SeqBAIJ" 6609867e207SSatish Balay int MatGetRow_SeqBAIJ(Mat A,int row,int *nz,int **idx,Scalar **v) 6619867e207SSatish Balay { 6629867e207SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 6637e67e3f9SSatish Balay int itmp,i,j,k,M,*ai,*aj,bs,bn,bp,*idx_i,bs2; 6649867e207SSatish Balay Scalar *aa,*v_i,*aa_i; 6659867e207SSatish Balay 6663a40ed3dSBarry Smith PetscFunctionBegin; 6679867e207SSatish Balay bs = a->bs; 6689867e207SSatish Balay ai = a->i; 6699867e207SSatish Balay aj = a->j; 6709867e207SSatish Balay aa = a->a; 6719df24120SSatish Balay bs2 = a->bs2; 6729867e207SSatish Balay 673a8c6a408SBarry Smith if (row < 0 || row >= a->m) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row out of range"); 6749867e207SSatish Balay 6759867e207SSatish Balay bn = row/bs; /* Block number */ 6769867e207SSatish Balay bp = row % bs; /* Block Position */ 6779867e207SSatish Balay M = ai[bn+1] - ai[bn]; 6789867e207SSatish Balay *nz = bs*M; 6799867e207SSatish Balay 6809867e207SSatish Balay if (v) { 6819867e207SSatish Balay *v = 0; 6829867e207SSatish Balay if (*nz) { 6839867e207SSatish Balay *v = (Scalar *) PetscMalloc( (*nz)*sizeof(Scalar) ); CHKPTRQ(*v); 6849867e207SSatish Balay for ( i=0; i<M; i++ ) { /* for each block in the block row */ 6859867e207SSatish Balay v_i = *v + i*bs; 6867e67e3f9SSatish Balay aa_i = aa + bs2*(ai[bn] + i); 6877e67e3f9SSatish Balay for ( j=bp,k=0; j<bs2; j+=bs,k++ ) {v_i[k] = aa_i[j];} 6889867e207SSatish Balay } 6899867e207SSatish Balay } 6909867e207SSatish Balay } 6919867e207SSatish Balay 6929867e207SSatish Balay if (idx) { 6939867e207SSatish Balay *idx = 0; 6949867e207SSatish Balay if (*nz) { 6959867e207SSatish Balay *idx = (int *) PetscMalloc( (*nz)*sizeof(int) ); CHKPTRQ(*idx); 6969867e207SSatish Balay for ( i=0; i<M; i++ ) { /* for each block in the block row */ 6979867e207SSatish Balay idx_i = *idx + i*bs; 6989867e207SSatish Balay itmp = bs*aj[ai[bn] + i]; 6999867e207SSatish Balay for ( j=0; j<bs; j++ ) {idx_i[j] = itmp++;} 7009867e207SSatish Balay } 7019867e207SSatish Balay } 7029867e207SSatish Balay } 7033a40ed3dSBarry Smith PetscFunctionReturn(0); 7049867e207SSatish Balay } 7059867e207SSatish Balay 7065615d1e5SSatish Balay #undef __FUNC__ 707d4bb536fSBarry Smith #define __FUNC__ "MatRestoreRow_SeqBAIJ" 7089867e207SSatish Balay int MatRestoreRow_SeqBAIJ(Mat A,int row,int *nz,int **idx,Scalar **v) 7099867e207SSatish Balay { 7103a40ed3dSBarry Smith PetscFunctionBegin; 7119867e207SSatish Balay if (idx) {if (*idx) PetscFree(*idx);} 7129867e207SSatish Balay if (v) {if (*v) PetscFree(*v);} 7133a40ed3dSBarry Smith PetscFunctionReturn(0); 7149867e207SSatish Balay } 715b6490206SBarry Smith 7165615d1e5SSatish Balay #undef __FUNC__ 7175615d1e5SSatish Balay #define __FUNC__ "MatTranspose_SeqBAIJ" 7188f6be9afSLois Curfman McInnes int MatTranspose_SeqBAIJ(Mat A,Mat *B) 719f2501298SSatish Balay { 720f2501298SSatish Balay Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data; 721f2501298SSatish Balay Mat C; 722f2501298SSatish Balay int i,j,k,ierr,*aj=a->j,*ai=a->i,bs=a->bs,mbs=a->mbs,nbs=a->nbs,len,*col; 7239df24120SSatish Balay int *rows,*cols,bs2=a->bs2; 724f2501298SSatish Balay Scalar *array=a->a; 725f2501298SSatish Balay 7263a40ed3dSBarry Smith PetscFunctionBegin; 727a8c6a408SBarry Smith if (B==PETSC_NULL && mbs!=nbs) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Square matrix only for in-place"); 728f2501298SSatish Balay col = (int *) PetscMalloc((1+nbs)*sizeof(int)); CHKPTRQ(col); 729f2501298SSatish Balay PetscMemzero(col,(1+nbs)*sizeof(int)); 730a7c10996SSatish Balay 731a7c10996SSatish Balay for ( i=0; i<ai[mbs]; i++ ) col[aj[i]] += 1; 732f2501298SSatish Balay ierr = MatCreateSeqBAIJ(A->comm,bs,a->n,a->m,PETSC_NULL,col,&C); CHKERRQ(ierr); 733f2501298SSatish Balay PetscFree(col); 734f2501298SSatish Balay rows = (int *) PetscMalloc(2*bs*sizeof(int)); CHKPTRQ(rows); 735f2501298SSatish Balay cols = rows + bs; 736f2501298SSatish Balay for ( i=0; i<mbs; i++ ) { 737f2501298SSatish Balay cols[0] = i*bs; 738f2501298SSatish Balay for (k=1; k<bs; k++ ) cols[k] = cols[k-1] + 1; 739f2501298SSatish Balay len = ai[i+1] - ai[i]; 740f2501298SSatish Balay for ( j=0; j<len; j++ ) { 741f2501298SSatish Balay rows[0] = (*aj++)*bs; 742f2501298SSatish Balay for (k=1; k<bs; k++ ) rows[k] = rows[k-1] + 1; 743f2501298SSatish Balay ierr = MatSetValues(C,bs,rows,bs,cols,array,INSERT_VALUES); CHKERRQ(ierr); 744f2501298SSatish Balay array += bs2; 745f2501298SSatish Balay } 746f2501298SSatish Balay } 7471073c447SSatish Balay PetscFree(rows); 748f2501298SSatish Balay 7496d4a8577SBarry Smith ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 7506d4a8577SBarry Smith ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 751f2501298SSatish Balay 752f2501298SSatish Balay if (B != PETSC_NULL) { 753f2501298SSatish Balay *B = C; 754f2501298SSatish Balay } else { 755f2501298SSatish Balay /* This isn't really an in-place transpose */ 756f2501298SSatish Balay PetscFree(a->a); 757f2501298SSatish Balay if (!a->singlemalloc) {PetscFree(a->i); PetscFree(a->j);} 758f2501298SSatish Balay if (a->diag) PetscFree(a->diag); 759f2501298SSatish Balay if (a->ilen) PetscFree(a->ilen); 760f2501298SSatish Balay if (a->imax) PetscFree(a->imax); 761f2501298SSatish Balay if (a->solve_work) PetscFree(a->solve_work); 762f2501298SSatish Balay PetscFree(a); 763f09e8eb9SSatish Balay PetscMemcpy(A,C,sizeof(struct _p_Mat)); 764f2501298SSatish Balay PetscHeaderDestroy(C); 765f2501298SSatish Balay } 7663a40ed3dSBarry Smith PetscFunctionReturn(0); 767f2501298SSatish Balay } 768f2501298SSatish Balay 769f2501298SSatish Balay 7705615d1e5SSatish Balay #undef __FUNC__ 7715615d1e5SSatish Balay #define __FUNC__ "MatAssemblyEnd_SeqBAIJ" 7728f6be9afSLois Curfman McInnes int MatAssemblyEnd_SeqBAIJ(Mat A,MatAssemblyType mode) 773584200bdSSatish Balay { 774584200bdSSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 775584200bdSSatish Balay int fshift = 0,i,j,*ai = a->i, *aj = a->j, *imax = a->imax; 776a7c10996SSatish Balay int m = a->m,*ip, N, *ailen = a->ilen; 77743ee02c3SBarry Smith int mbs = a->mbs, bs2 = a->bs2,rmax = 0; 778584200bdSSatish Balay Scalar *aa = a->a, *ap; 779584200bdSSatish Balay 7803a40ed3dSBarry Smith PetscFunctionBegin; 7813a40ed3dSBarry Smith if (mode == MAT_FLUSH_ASSEMBLY) PetscFunctionReturn(0); 782584200bdSSatish Balay 78343ee02c3SBarry Smith if (m) rmax = ailen[0]; 784584200bdSSatish Balay for ( i=1; i<mbs; i++ ) { 785584200bdSSatish Balay /* move each row back by the amount of empty slots (fshift) before it*/ 786584200bdSSatish Balay fshift += imax[i-1] - ailen[i-1]; 787d402145bSBarry Smith rmax = PetscMax(rmax,ailen[i]); 788584200bdSSatish Balay if (fshift) { 789a7c10996SSatish Balay ip = aj + ai[i]; ap = aa + bs2*ai[i]; 790584200bdSSatish Balay N = ailen[i]; 791584200bdSSatish Balay for ( j=0; j<N; j++ ) { 792584200bdSSatish Balay ip[j-fshift] = ip[j]; 7937e67e3f9SSatish Balay PetscMemcpy(ap+(j-fshift)*bs2,ap+j*bs2,bs2*sizeof(Scalar)); 794584200bdSSatish Balay } 795584200bdSSatish Balay } 796584200bdSSatish Balay ai[i] = ai[i-1] + ailen[i-1]; 797584200bdSSatish Balay } 798584200bdSSatish Balay if (mbs) { 799584200bdSSatish Balay fshift += imax[mbs-1] - ailen[mbs-1]; 800584200bdSSatish Balay ai[mbs] = ai[mbs-1] + ailen[mbs-1]; 801584200bdSSatish Balay } 802584200bdSSatish Balay /* reset ilen and imax for each row */ 803584200bdSSatish Balay for ( i=0; i<mbs; i++ ) { 804584200bdSSatish Balay ailen[i] = imax[i] = ai[i+1] - ai[i]; 805584200bdSSatish Balay } 806a7c10996SSatish Balay a->nz = ai[mbs]; 807584200bdSSatish Balay 808584200bdSSatish Balay /* diagonals may have moved, so kill the diagonal pointers */ 809584200bdSSatish Balay if (fshift && a->diag) { 810584200bdSSatish Balay PetscFree(a->diag); 811584200bdSSatish Balay PLogObjectMemory(A,-(m+1)*sizeof(int)); 812584200bdSSatish Balay a->diag = 0; 813584200bdSSatish Balay } 8143d2013a6SLois Curfman McInnes PLogInfo(A,"MatAssemblyEnd_SeqBAIJ:Matrix size: %d X %d, block size %d; storage space: %d unneeded, %d used\n", 815219d9a1aSLois Curfman McInnes m,a->n,a->bs,fshift*bs2,a->nz*bs2); 8163d2013a6SLois Curfman McInnes PLogInfo(A,"MatAssemblyEnd_SeqBAIJ:Number of mallocs during MatSetValues is %d\n", 817584200bdSSatish Balay a->reallocs); 818d402145bSBarry Smith PLogInfo(A,"MatAssemblyEnd_SeqBAIJ:Most nonzeros blocks in any row is %d\n",rmax); 819e2f3b5e9SSatish Balay a->reallocs = 0; 8204e220ebcSLois Curfman McInnes A->info.nz_unneeded = (double)fshift*bs2; 8214e220ebcSLois Curfman McInnes 8223a40ed3dSBarry Smith PetscFunctionReturn(0); 823584200bdSSatish Balay } 824584200bdSSatish Balay 8255615d1e5SSatish Balay #undef __FUNC__ 8265615d1e5SSatish Balay #define __FUNC__ "MatZeroEntries_SeqBAIJ" 8278f6be9afSLois Curfman McInnes int MatZeroEntries_SeqBAIJ(Mat A) 8282593348eSBarry Smith { 829b6490206SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 8303a40ed3dSBarry Smith 8313a40ed3dSBarry Smith PetscFunctionBegin; 8329df24120SSatish Balay PetscMemzero(a->a,a->bs2*a->i[a->mbs]*sizeof(Scalar)); 8333a40ed3dSBarry Smith PetscFunctionReturn(0); 8342593348eSBarry Smith } 8352593348eSBarry Smith 8365615d1e5SSatish Balay #undef __FUNC__ 837d4bb536fSBarry Smith #define __FUNC__ "MatDestroy_SeqBAIJ" 838b6490206SBarry Smith int MatDestroy_SeqBAIJ(PetscObject obj) 8392593348eSBarry Smith { 8402593348eSBarry Smith Mat A = (Mat) obj; 841b6490206SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 8422593348eSBarry Smith 8433a40ed3dSBarry Smith #if defined(USE_PETSC_LOG) 8442593348eSBarry Smith PLogObjectState(obj,"Rows=%d, Cols=%d, NZ=%d",a->m,a->n,a->nz); 8452593348eSBarry Smith #endif 8462593348eSBarry Smith PetscFree(a->a); 8472593348eSBarry Smith if (!a->singlemalloc) { PetscFree(a->i); PetscFree(a->j);} 8482593348eSBarry Smith if (a->diag) PetscFree(a->diag); 8492593348eSBarry Smith if (a->ilen) PetscFree(a->ilen); 8502593348eSBarry Smith if (a->imax) PetscFree(a->imax); 8512593348eSBarry Smith if (a->solve_work) PetscFree(a->solve_work); 852de6a44a3SBarry Smith if (a->mult_work) PetscFree(a->mult_work); 8532593348eSBarry Smith PetscFree(a); 854f2655603SLois Curfman McInnes PLogObjectDestroy(A); 855f2655603SLois Curfman McInnes PetscHeaderDestroy(A); 8563a40ed3dSBarry Smith PetscFunctionReturn(0); 8572593348eSBarry Smith } 8582593348eSBarry Smith 8595615d1e5SSatish Balay #undef __FUNC__ 860d4bb536fSBarry Smith #define __FUNC__ "MatSetOption_SeqBAIJ" 8618f6be9afSLois Curfman McInnes int MatSetOption_SeqBAIJ(Mat A,MatOption op) 8622593348eSBarry Smith { 863b6490206SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 8643a40ed3dSBarry Smith 8653a40ed3dSBarry Smith PetscFunctionBegin; 8666d4a8577SBarry Smith if (op == MAT_ROW_ORIENTED) a->roworiented = 1; 8676d4a8577SBarry Smith else if (op == MAT_COLUMN_ORIENTED) a->roworiented = 0; 8686d4a8577SBarry Smith else if (op == MAT_COLUMNS_SORTED) a->sorted = 1; 869219d9a1aSLois Curfman McInnes else if (op == MAT_COLUMNS_UNSORTED) a->sorted = 0; 8706d4a8577SBarry Smith else if (op == MAT_NO_NEW_NONZERO_LOCATIONS) a->nonew = 1; 871c2653b3dSLois Curfman McInnes else if (op == MAT_NEW_NONZERO_LOCATION_ERROR) a->nonew = -1; 87296854ed6SLois Curfman McInnes else if (op == MAT_NEW_NONZERO_ALLOCATION_ERROR) a->nonew = -2; 8736d4a8577SBarry Smith else if (op == MAT_YES_NEW_NONZERO_LOCATIONS) a->nonew = 0; 8746d4a8577SBarry Smith else if (op == MAT_ROWS_SORTED || 875219d9a1aSLois Curfman McInnes op == MAT_ROWS_UNSORTED || 8766d4a8577SBarry Smith op == MAT_SYMMETRIC || 8776d4a8577SBarry Smith op == MAT_STRUCTURALLY_SYMMETRIC || 87890f02eecSBarry Smith op == MAT_YES_NEW_DIAGONALS || 8793a40ed3dSBarry Smith op == MAT_IGNORE_OFF_PROC_ENTRIES) { 88094a424c1SBarry Smith PLogInfo(A,"Info:MatSetOption_SeqBAIJ:Option ignored\n"); 8813a40ed3dSBarry Smith } else if (op == MAT_NO_NEW_DIAGONALS) { 8823a40ed3dSBarry Smith SETERRQ(PETSC_ERR_SUP,0,"MAT_NO_NEW_DIAGONALS"); 8833a40ed3dSBarry Smith } else { 8843a40ed3dSBarry Smith SETERRQ(PETSC_ERR_SUP,0,"unknown option"); 8853a40ed3dSBarry Smith } 8863a40ed3dSBarry Smith PetscFunctionReturn(0); 8872593348eSBarry Smith } 8882593348eSBarry Smith 8892593348eSBarry Smith 8902593348eSBarry Smith /* -------------------------------------------------------*/ 8912593348eSBarry Smith /* Should check that shapes of vectors and matrices match */ 8922593348eSBarry Smith /* -------------------------------------------------------*/ 893b6490206SBarry Smith #include "pinclude/plapack.h" 894b6490206SBarry Smith 8955615d1e5SSatish Balay #undef __FUNC__ 8965615d1e5SSatish Balay #define __FUNC__ "MatMult_SeqBAIJ_1" 89739b95ed1SBarry Smith static int MatMult_SeqBAIJ_1(Mat A,Vec xx,Vec zz) 8982593348eSBarry Smith { 899b6490206SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 90039b95ed1SBarry Smith register Scalar *x,*z,*v,sum; 901c16cb8f2SBarry Smith int mbs=a->mbs,i,*idx,*ii,n; 9022593348eSBarry Smith 9033a40ed3dSBarry Smith PetscFunctionBegin; 904c16cb8f2SBarry Smith VecGetArray_Fast(xx,x); 905c16cb8f2SBarry Smith VecGetArray_Fast(zz,z); 906b6490206SBarry Smith 907119a934aSSatish Balay idx = a->j; 908119a934aSSatish Balay v = a->a; 909119a934aSSatish Balay ii = a->i; 910119a934aSSatish Balay 911119a934aSSatish Balay for ( i=0; i<mbs; i++ ) { 912119a934aSSatish Balay n = ii[1] - ii[0]; ii++; 913119a934aSSatish Balay sum = 0.0; 914119a934aSSatish Balay while (n--) sum += *v++ * x[*idx++]; 9151a6a6d98SBarry Smith z[i] = sum; 916119a934aSSatish Balay } 917c16cb8f2SBarry Smith VecRestoreArray_Fast(xx,x); 918c16cb8f2SBarry Smith VecRestoreArray_Fast(zz,z); 91939b95ed1SBarry Smith PLogFlops(2*a->nz - a->m); 9203a40ed3dSBarry Smith PetscFunctionReturn(0); 92139b95ed1SBarry Smith } 92239b95ed1SBarry Smith 9235615d1e5SSatish Balay #undef __FUNC__ 9245615d1e5SSatish Balay #define __FUNC__ "MatMult_SeqBAIJ_2" 92539b95ed1SBarry Smith static int MatMult_SeqBAIJ_2(Mat A,Vec xx,Vec zz) 92639b95ed1SBarry Smith { 92739b95ed1SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 92839b95ed1SBarry Smith register Scalar *x,*z,*v,*xb,sum1,sum2; 92939b95ed1SBarry Smith register Scalar x1,x2; 9303a40ed3dSBarry Smith int mbs=a->mbs,i,*idx,*ii,j,n; 93139b95ed1SBarry Smith 9323a40ed3dSBarry Smith PetscFunctionBegin; 933c16cb8f2SBarry Smith VecGetArray_Fast(xx,x); 934c16cb8f2SBarry Smith VecGetArray_Fast(zz,z); 93539b95ed1SBarry Smith 93639b95ed1SBarry Smith idx = a->j; 93739b95ed1SBarry Smith v = a->a; 93839b95ed1SBarry Smith ii = a->i; 93939b95ed1SBarry Smith 940119a934aSSatish Balay for ( i=0; i<mbs; i++ ) { 941119a934aSSatish Balay n = ii[1] - ii[0]; ii++; 942119a934aSSatish Balay sum1 = 0.0; sum2 = 0.0; 943119a934aSSatish Balay for ( j=0; j<n; j++ ) { 944119a934aSSatish Balay xb = x + 2*(*idx++); x1 = xb[0]; x2 = xb[1]; 945119a934aSSatish Balay sum1 += v[0]*x1 + v[2]*x2; 946119a934aSSatish Balay sum2 += v[1]*x1 + v[3]*x2; 947119a934aSSatish Balay v += 4; 948119a934aSSatish Balay } 9491a6a6d98SBarry Smith z[0] = sum1; z[1] = sum2; 950119a934aSSatish Balay z += 2; 951119a934aSSatish Balay } 952c16cb8f2SBarry Smith VecRestoreArray_Fast(xx,x); 953c16cb8f2SBarry Smith VecRestoreArray_Fast(zz,z); 95439b95ed1SBarry Smith PLogFlops(4*a->nz - a->m); 9553a40ed3dSBarry Smith PetscFunctionReturn(0); 95639b95ed1SBarry Smith } 95739b95ed1SBarry Smith 9585615d1e5SSatish Balay #undef __FUNC__ 9595615d1e5SSatish Balay #define __FUNC__ "MatMult_SeqBAIJ_3" 96039b95ed1SBarry Smith static int MatMult_SeqBAIJ_3(Mat A,Vec xx,Vec zz) 96139b95ed1SBarry Smith { 96239b95ed1SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 96339b95ed1SBarry Smith register Scalar *x,*z,*v,*xb,sum1,sum2,sum3,x1,x2,x3; 964c16cb8f2SBarry Smith int mbs=a->mbs,i,*idx,*ii,j,n; 96539b95ed1SBarry Smith 9663a40ed3dSBarry Smith PetscFunctionBegin; 967c16cb8f2SBarry Smith VecGetArray_Fast(xx,x); 968c16cb8f2SBarry Smith VecGetArray_Fast(zz,z); 96939b95ed1SBarry Smith 97039b95ed1SBarry Smith idx = a->j; 97139b95ed1SBarry Smith v = a->a; 97239b95ed1SBarry Smith ii = a->i; 97339b95ed1SBarry Smith 974119a934aSSatish Balay for ( i=0; i<mbs; i++ ) { 975119a934aSSatish Balay n = ii[1] - ii[0]; ii++; 976119a934aSSatish Balay sum1 = 0.0; sum2 = 0.0; sum3 = 0.0; 977119a934aSSatish Balay for ( j=0; j<n; j++ ) { 978119a934aSSatish Balay xb = x + 3*(*idx++); x1 = xb[0]; x2 = xb[1]; x3 = xb[2]; 979119a934aSSatish Balay sum1 += v[0]*x1 + v[3]*x2 + v[6]*x3; 980119a934aSSatish Balay sum2 += v[1]*x1 + v[4]*x2 + v[7]*x3; 981119a934aSSatish Balay sum3 += v[2]*x1 + v[5]*x2 + v[8]*x3; 982119a934aSSatish Balay v += 9; 983119a934aSSatish Balay } 9841a6a6d98SBarry Smith z[0] = sum1; z[1] = sum2; z[2] = sum3; 985119a934aSSatish Balay z += 3; 986119a934aSSatish Balay } 987c16cb8f2SBarry Smith VecRestoreArray_Fast(xx,x); 988c16cb8f2SBarry Smith VecRestoreArray_Fast(zz,z); 98939b95ed1SBarry Smith PLogFlops(18*a->nz - a->m); 9903a40ed3dSBarry Smith PetscFunctionReturn(0); 99139b95ed1SBarry Smith } 99239b95ed1SBarry Smith 9935615d1e5SSatish Balay #undef __FUNC__ 9945615d1e5SSatish Balay #define __FUNC__ "MatMult_SeqBAIJ_4" 99539b95ed1SBarry Smith static int MatMult_SeqBAIJ_4(Mat A,Vec xx,Vec zz) 99639b95ed1SBarry Smith { 99739b95ed1SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 9983a40ed3dSBarry Smith register Scalar *x,*z,*v,*xb,sum1,sum2,sum3,sum4,x1,x2,x3,x4; 9993a40ed3dSBarry Smith int mbs=a->mbs,i,*idx,*ii,j,n; 100039b95ed1SBarry Smith 10013a40ed3dSBarry Smith PetscFunctionBegin; 1002c16cb8f2SBarry Smith VecGetArray_Fast(xx,x); 1003c16cb8f2SBarry Smith VecGetArray_Fast(zz,z); 100439b95ed1SBarry Smith 100539b95ed1SBarry Smith idx = a->j; 100639b95ed1SBarry Smith v = a->a; 100739b95ed1SBarry Smith ii = a->i; 100839b95ed1SBarry Smith 1009119a934aSSatish Balay for ( i=0; i<mbs; i++ ) { 1010119a934aSSatish Balay n = ii[1] - ii[0]; ii++; 1011119a934aSSatish Balay sum1 = 0.0; sum2 = 0.0; sum3 = 0.0; sum4 = 0.0; 1012119a934aSSatish Balay for ( j=0; j<n; j++ ) { 1013119a934aSSatish Balay xb = x + 4*(*idx++); 1014119a934aSSatish Balay x1 = xb[0]; x2 = xb[1]; x3 = xb[2]; x4 = xb[3]; 1015119a934aSSatish Balay sum1 += v[0]*x1 + v[4]*x2 + v[8]*x3 + v[12]*x4; 1016119a934aSSatish Balay sum2 += v[1]*x1 + v[5]*x2 + v[9]*x3 + v[13]*x4; 1017119a934aSSatish Balay sum3 += v[2]*x1 + v[6]*x2 + v[10]*x3 + v[14]*x4; 1018119a934aSSatish Balay sum4 += v[3]*x1 + v[7]*x2 + v[11]*x3 + v[15]*x4; 1019119a934aSSatish Balay v += 16; 1020119a934aSSatish Balay } 10211a6a6d98SBarry Smith z[0] = sum1; z[1] = sum2; z[2] = sum3; z[3] = sum4; 1022119a934aSSatish Balay z += 4; 1023119a934aSSatish Balay } 1024c16cb8f2SBarry Smith VecRestoreArray_Fast(xx,x); 1025c16cb8f2SBarry Smith VecRestoreArray_Fast(zz,z); 102639b95ed1SBarry Smith PLogFlops(32*a->nz - a->m); 10273a40ed3dSBarry Smith PetscFunctionReturn(0); 102839b95ed1SBarry Smith } 102939b95ed1SBarry Smith 10305615d1e5SSatish Balay #undef __FUNC__ 10315615d1e5SSatish Balay #define __FUNC__ "MatMult_SeqBAIJ_5" 103239b95ed1SBarry Smith static int MatMult_SeqBAIJ_5(Mat A,Vec xx,Vec zz) 103339b95ed1SBarry Smith { 103439b95ed1SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 1035522c5e43SBarry Smith register Scalar sum1,sum2,sum3,sum4,sum5,x1,x2,x3,x4,x5; 1036522c5e43SBarry Smith register Scalar * restrict v,* restrict xb,* restrict z, * restrict x; 1037c16cb8f2SBarry Smith int mbs=a->mbs,i,*idx,*ii,j,n; 103839b95ed1SBarry Smith 1039c16cb8f2SBarry Smith VecGetArray_Fast(xx,x); 1040c16cb8f2SBarry Smith VecGetArray_Fast(zz,z); 104139b95ed1SBarry Smith 104239b95ed1SBarry Smith idx = a->j; 104339b95ed1SBarry Smith v = a->a; 104439b95ed1SBarry Smith ii = a->i; 104539b95ed1SBarry Smith 1046119a934aSSatish Balay for ( i=0; i<mbs; i++ ) { 1047119a934aSSatish Balay n = ii[1] - ii[0]; ii++; 1048119a934aSSatish Balay sum1 = 0.0; sum2 = 0.0; sum3 = 0.0; sum4 = 0.0; sum5 = 0.0; 1049119a934aSSatish Balay for ( j=0; j<n; j++ ) { 1050119a934aSSatish Balay xb = x + 5*(*idx++); 1051119a934aSSatish Balay x1 = xb[0]; x2 = xb[1]; x3 = xb[2]; x4 = xb[3]; x5 = xb[4]; 1052119a934aSSatish Balay sum1 += v[0]*x1 + v[5]*x2 + v[10]*x3 + v[15]*x4 + v[20]*x5; 1053119a934aSSatish Balay sum2 += v[1]*x1 + v[6]*x2 + v[11]*x3 + v[16]*x4 + v[21]*x5; 1054119a934aSSatish Balay sum3 += v[2]*x1 + v[7]*x2 + v[12]*x3 + v[17]*x4 + v[22]*x5; 1055119a934aSSatish Balay sum4 += v[3]*x1 + v[8]*x2 + v[13]*x3 + v[18]*x4 + v[23]*x5; 1056119a934aSSatish Balay sum5 += v[4]*x1 + v[9]*x2 + v[14]*x3 + v[19]*x4 + v[24]*x5; 1057119a934aSSatish Balay v += 25; 1058119a934aSSatish Balay } 10591a6a6d98SBarry Smith z[0] = sum1; z[1] = sum2; z[2] = sum3; z[3] = sum4; z[4] = sum5; 1060119a934aSSatish Balay z += 5; 1061119a934aSSatish Balay } 1062c16cb8f2SBarry Smith VecRestoreArray_Fast(xx,x); 1063c16cb8f2SBarry Smith VecRestoreArray_Fast(zz,z); 106439b95ed1SBarry Smith PLogFlops(50*a->nz - a->m); 10653a40ed3dSBarry Smith PetscFunctionReturn(0); 106639b95ed1SBarry Smith } 106739b95ed1SBarry Smith 10685615d1e5SSatish Balay #undef __FUNC__ 106948e9ddb2SSatish Balay #define __FUNC__ "MatMult_SeqBAIJ_7" 107048e9ddb2SSatish Balay static int MatMult_SeqBAIJ_7(Mat A,Vec xx,Vec zz) 107148e9ddb2SSatish Balay { 107248e9ddb2SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 107348e9ddb2SSatish Balay register Scalar *x,*z,*v,*xb,sum1,sum2,sum3,sum4,sum5,sum6,sum7; 107448e9ddb2SSatish Balay register Scalar x1,x2,x3,x4,x5,x6,x7; 107548e9ddb2SSatish Balay int mbs=a->mbs,i,*idx,*ii,j,n; 107648e9ddb2SSatish Balay 107748e9ddb2SSatish Balay VecGetArray_Fast(xx,x); 107848e9ddb2SSatish Balay VecGetArray_Fast(zz,z); 107948e9ddb2SSatish Balay 108048e9ddb2SSatish Balay idx = a->j; 108148e9ddb2SSatish Balay v = a->a; 108248e9ddb2SSatish Balay ii = a->i; 108348e9ddb2SSatish Balay 108448e9ddb2SSatish Balay for ( i=0; i<mbs; i++ ) { 108548e9ddb2SSatish Balay n = ii[1] - ii[0]; ii++; 108648e9ddb2SSatish Balay sum1 = 0.0; sum2 = 0.0; sum3 = 0.0; sum4 = 0.0; sum5 = 0.0; sum6 = 0.0; sum7 = 0.0; 108748e9ddb2SSatish Balay for ( j=0; j<n; j++ ) { 108848e9ddb2SSatish Balay xb = x + 7*(*idx++); 108948e9ddb2SSatish Balay x1 = xb[0]; x2 = xb[1]; x3 = xb[2]; x4 = xb[3]; x5 = xb[4]; x6 = xb[5]; x7 = xb[6]; 109048e9ddb2SSatish Balay sum1 += v[0]*x1 + v[7]*x2 + v[14]*x3 + v[21]*x4 + v[28]*x5 + v[35]*x6 + v[42]*x7; 109148e9ddb2SSatish Balay sum2 += v[1]*x1 + v[8]*x2 + v[15]*x3 + v[22]*x4 + v[29]*x5 + v[36]*x6 + v[43]*x7; 109248e9ddb2SSatish Balay sum3 += v[2]*x1 + v[9]*x2 + v[16]*x3 + v[23]*x4 + v[30]*x5 + v[37]*x6 + v[44]*x7; 109348e9ddb2SSatish Balay sum4 += v[3]*x1 + v[10]*x2 + v[17]*x3 + v[24]*x4 + v[31]*x5 + v[38]*x6 + v[45]*x7; 109448e9ddb2SSatish Balay sum5 += v[4]*x1 + v[11]*x2 + v[18]*x3 + v[25]*x4 + v[32]*x5 + v[39]*x6 + v[46]*x7; 109548e9ddb2SSatish Balay sum6 += v[5]*x1 + v[12]*x2 + v[19]*x3 + v[26]*x4 + v[33]*x5 + v[40]*x6 + v[47]*x7; 109648e9ddb2SSatish Balay sum7 += v[6]*x1 + v[13]*x2 + v[20]*x3 + v[27]*x4 + v[34]*x5 + v[41]*x6 + v[48]*x7; 109748e9ddb2SSatish Balay v += 49; 109848e9ddb2SSatish Balay } 109948e9ddb2SSatish Balay z[0] = sum1; z[1] = sum2; z[2] = sum3; z[3] = sum4; z[4] = sum5; z[5] = sum6; z[6] = sum7; 110048e9ddb2SSatish Balay z += 7; 110148e9ddb2SSatish Balay } 110248e9ddb2SSatish Balay 110348e9ddb2SSatish Balay VecRestoreArray_Fast(xx,x); 110448e9ddb2SSatish Balay VecRestoreArray_Fast(zz,z); 110548e9ddb2SSatish Balay PLogFlops(98*a->nz - a->m); 11063a40ed3dSBarry Smith PetscFunctionReturn(0); 110748e9ddb2SSatish Balay } 110848e9ddb2SSatish Balay 110948e9ddb2SSatish Balay #undef __FUNC__ 11105615d1e5SSatish Balay #define __FUNC__ "MatMult_SeqBAIJ_N" 111139b95ed1SBarry Smith static int MatMult_SeqBAIJ_N(Mat A,Vec xx,Vec zz) 111239b95ed1SBarry Smith { 111339b95ed1SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 111439b95ed1SBarry Smith register Scalar *x,*z,*v,*xb; 11153a40ed3dSBarry Smith Scalar _DOne = 1.0,*work,*workt,_DZero = 0.0; 1116c16cb8f2SBarry Smith int mbs=a->mbs,i,*idx,*ii,bs=a->bs,j,n,bs2=a->bs2; 1117c16cb8f2SBarry Smith int _One = 1,ncols,k; 111839b95ed1SBarry Smith 11193a40ed3dSBarry Smith PetscFunctionBegin; 1120c16cb8f2SBarry Smith VecGetArray_Fast(xx,x); 1121c16cb8f2SBarry Smith VecGetArray_Fast(zz,z); 112239b95ed1SBarry Smith 112339b95ed1SBarry Smith idx = a->j; 112439b95ed1SBarry Smith v = a->a; 112539b95ed1SBarry Smith ii = a->i; 112639b95ed1SBarry Smith 112739b95ed1SBarry Smith 1128119a934aSSatish Balay if (!a->mult_work) { 11293b547af2SSatish Balay k = PetscMax(a->m,a->n); 11302b3076dcSSatish Balay a->mult_work = (Scalar *) PetscMalloc((k+1)*sizeof(Scalar));CHKPTRQ(a->mult_work); 1131119a934aSSatish Balay } 1132119a934aSSatish Balay work = a->mult_work; 1133119a934aSSatish Balay for ( i=0; i<mbs; i++ ) { 1134119a934aSSatish Balay n = ii[1] - ii[0]; ii++; 1135119a934aSSatish Balay ncols = n*bs; 1136119a934aSSatish Balay workt = work; 1137119a934aSSatish Balay for ( j=0; j<n; j++ ) { 1138119a934aSSatish Balay xb = x + bs*(*idx++); 1139119a934aSSatish Balay for ( k=0; k<bs; k++ ) workt[k] = xb[k]; 1140119a934aSSatish Balay workt += bs; 1141119a934aSSatish Balay } 11421a6a6d98SBarry Smith LAgemv_("N",&bs,&ncols,&_DOne,v,&bs,work,&_One,&_DZero,z,&_One); 1143119a934aSSatish Balay v += n*bs2; 1144119a934aSSatish Balay z += bs; 1145119a934aSSatish Balay } 1146c16cb8f2SBarry Smith VecRestoreArray_Fast(xx,x); 1147c16cb8f2SBarry Smith VecRestoreArray_Fast(zz,z); 11481a6a6d98SBarry Smith PLogFlops(2*a->nz*bs2 - a->m); 11493a40ed3dSBarry Smith PetscFunctionReturn(0); 1150bb42667fSSatish Balay } 1151bb42667fSSatish Balay 11525615d1e5SSatish Balay #undef __FUNC__ 11535615d1e5SSatish Balay #define __FUNC__ "MatMultAdd_SeqBAIJ_1" 1154f44d3a6dSSatish Balay static int MatMultAdd_SeqBAIJ_1(Mat A,Vec xx,Vec yy,Vec zz) 1155f44d3a6dSSatish Balay { 1156f44d3a6dSSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 1157f44d3a6dSSatish Balay register Scalar *x,*y,*z,*v,sum; 1158c16cb8f2SBarry Smith int mbs=a->mbs,i,*idx,*ii,n; 1159f44d3a6dSSatish Balay 11603a40ed3dSBarry Smith PetscFunctionBegin; 1161c16cb8f2SBarry Smith VecGetArray_Fast(xx,x); 1162c16cb8f2SBarry Smith VecGetArray_Fast(yy,y); 1163c16cb8f2SBarry Smith VecGetArray_Fast(zz,z); 1164f44d3a6dSSatish Balay 1165f44d3a6dSSatish Balay idx = a->j; 1166f44d3a6dSSatish Balay v = a->a; 1167f44d3a6dSSatish Balay ii = a->i; 1168f44d3a6dSSatish Balay 1169f44d3a6dSSatish Balay for ( i=0; i<mbs; i++ ) { 1170f44d3a6dSSatish Balay n = ii[1] - ii[0]; ii++; 1171f44d3a6dSSatish Balay sum = y[i]; 1172f44d3a6dSSatish Balay while (n--) sum += *v++ * x[*idx++]; 1173f44d3a6dSSatish Balay z[i] = sum; 1174f44d3a6dSSatish Balay } 1175c16cb8f2SBarry Smith VecRestoreArray_Fast(xx,x); 1176c16cb8f2SBarry Smith VecRestoreArray_Fast(yy,y); 1177c16cb8f2SBarry Smith VecRestoreArray_Fast(zz,z); 1178f44d3a6dSSatish Balay PLogFlops(2*a->nz); 11793a40ed3dSBarry Smith PetscFunctionReturn(0); 1180f44d3a6dSSatish Balay } 1181f44d3a6dSSatish Balay 11825615d1e5SSatish Balay #undef __FUNC__ 11835615d1e5SSatish Balay #define __FUNC__ "MatMultAdd_SeqBAIJ_2" 1184f44d3a6dSSatish Balay static int MatMultAdd_SeqBAIJ_2(Mat A,Vec xx,Vec yy,Vec zz) 1185f44d3a6dSSatish Balay { 1186f44d3a6dSSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 1187f44d3a6dSSatish Balay register Scalar *x,*y,*z,*v,*xb,sum1,sum2; 1188f44d3a6dSSatish Balay register Scalar x1,x2; 11893a40ed3dSBarry Smith int mbs=a->mbs,i,*idx,*ii,j,n; 1190f44d3a6dSSatish Balay 11913a40ed3dSBarry Smith PetscFunctionBegin; 1192c16cb8f2SBarry Smith VecGetArray_Fast(xx,x); 1193c16cb8f2SBarry Smith VecGetArray_Fast(yy,y); 1194c16cb8f2SBarry Smith VecGetArray_Fast(zz,z); 1195f44d3a6dSSatish Balay 1196f44d3a6dSSatish Balay idx = a->j; 1197f44d3a6dSSatish Balay v = a->a; 1198f44d3a6dSSatish Balay ii = a->i; 1199f44d3a6dSSatish Balay 1200f44d3a6dSSatish Balay for ( i=0; i<mbs; i++ ) { 1201f44d3a6dSSatish Balay n = ii[1] - ii[0]; ii++; 1202f44d3a6dSSatish Balay sum1 = y[0]; sum2 = y[1]; 1203f44d3a6dSSatish Balay for ( j=0; j<n; j++ ) { 1204f44d3a6dSSatish Balay xb = x + 2*(*idx++); x1 = xb[0]; x2 = xb[1]; 1205f44d3a6dSSatish Balay sum1 += v[0]*x1 + v[2]*x2; 1206f44d3a6dSSatish Balay sum2 += v[1]*x1 + v[3]*x2; 1207f44d3a6dSSatish Balay v += 4; 1208f44d3a6dSSatish Balay } 1209f44d3a6dSSatish Balay z[0] = sum1; z[1] = sum2; 1210f44d3a6dSSatish Balay z += 2; y += 2; 1211f44d3a6dSSatish Balay } 1212c16cb8f2SBarry Smith VecRestoreArray_Fast(xx,x); 1213c16cb8f2SBarry Smith VecRestoreArray_Fast(yy,y); 1214c16cb8f2SBarry Smith VecRestoreArray_Fast(zz,z); 1215f44d3a6dSSatish Balay PLogFlops(4*a->nz); 12163a40ed3dSBarry Smith PetscFunctionReturn(0); 1217f44d3a6dSSatish Balay } 1218f44d3a6dSSatish Balay 12195615d1e5SSatish Balay #undef __FUNC__ 12205615d1e5SSatish Balay #define __FUNC__ "MatMultAdd_SeqBAIJ_3" 1221f44d3a6dSSatish Balay static int MatMultAdd_SeqBAIJ_3(Mat A,Vec xx,Vec yy,Vec zz) 1222f44d3a6dSSatish Balay { 1223f44d3a6dSSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 1224f44d3a6dSSatish Balay register Scalar *x,*y,*z,*v,*xb,sum1,sum2,sum3,x1,x2,x3; 1225c16cb8f2SBarry Smith int mbs=a->mbs,i,*idx,*ii,j,n; 1226f44d3a6dSSatish Balay 12273a40ed3dSBarry Smith PetscFunctionBegin; 1228c16cb8f2SBarry Smith VecGetArray_Fast(xx,x); 1229c16cb8f2SBarry Smith VecGetArray_Fast(yy,y); 1230c16cb8f2SBarry Smith VecGetArray_Fast(zz,z); 1231f44d3a6dSSatish Balay 1232f44d3a6dSSatish Balay idx = a->j; 1233f44d3a6dSSatish Balay v = a->a; 1234f44d3a6dSSatish Balay ii = a->i; 1235f44d3a6dSSatish Balay 1236f44d3a6dSSatish Balay for ( i=0; i<mbs; i++ ) { 1237f44d3a6dSSatish Balay n = ii[1] - ii[0]; ii++; 1238f44d3a6dSSatish Balay sum1 = y[0]; sum2 = y[1]; sum3 = y[2]; 1239f44d3a6dSSatish Balay for ( j=0; j<n; j++ ) { 1240f44d3a6dSSatish Balay xb = x + 3*(*idx++); x1 = xb[0]; x2 = xb[1]; x3 = xb[2]; 1241f44d3a6dSSatish Balay sum1 += v[0]*x1 + v[3]*x2 + v[6]*x3; 1242f44d3a6dSSatish Balay sum2 += v[1]*x1 + v[4]*x2 + v[7]*x3; 1243f44d3a6dSSatish Balay sum3 += v[2]*x1 + v[5]*x2 + v[8]*x3; 1244f44d3a6dSSatish Balay v += 9; 1245f44d3a6dSSatish Balay } 1246f44d3a6dSSatish Balay z[0] = sum1; z[1] = sum2; z[2] = sum3; 1247f44d3a6dSSatish Balay z += 3; y += 3; 1248f44d3a6dSSatish Balay } 1249c16cb8f2SBarry Smith VecRestoreArray_Fast(xx,x); 1250c16cb8f2SBarry Smith VecRestoreArray_Fast(yy,y); 1251c16cb8f2SBarry Smith VecRestoreArray_Fast(zz,z); 1252f44d3a6dSSatish Balay PLogFlops(18*a->nz); 12533a40ed3dSBarry Smith PetscFunctionReturn(0); 1254f44d3a6dSSatish Balay } 1255f44d3a6dSSatish Balay 12565615d1e5SSatish Balay #undef __FUNC__ 12575615d1e5SSatish Balay #define __FUNC__ "MatMultAdd_SeqBAIJ_4" 1258f44d3a6dSSatish Balay static int MatMultAdd_SeqBAIJ_4(Mat A,Vec xx,Vec yy,Vec zz) 1259f44d3a6dSSatish Balay { 1260f44d3a6dSSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 12613a40ed3dSBarry Smith register Scalar *x,*y,*z,*v,*xb,sum1,sum2,sum3,sum4,x1,x2,x3,x4; 1262f44d3a6dSSatish Balay int mbs=a->mbs,i,*idx,*ii; 1263c16cb8f2SBarry Smith int j,n; 1264f44d3a6dSSatish Balay 12653a40ed3dSBarry Smith PetscFunctionBegin; 1266c16cb8f2SBarry Smith VecGetArray_Fast(xx,x); 1267c16cb8f2SBarry Smith VecGetArray_Fast(yy,y); 1268c16cb8f2SBarry Smith VecGetArray_Fast(zz,z); 1269f44d3a6dSSatish Balay 1270f44d3a6dSSatish Balay idx = a->j; 1271f44d3a6dSSatish Balay v = a->a; 1272f44d3a6dSSatish Balay ii = a->i; 1273f44d3a6dSSatish Balay 1274f44d3a6dSSatish Balay for ( i=0; i<mbs; i++ ) { 1275f44d3a6dSSatish Balay n = ii[1] - ii[0]; ii++; 1276f44d3a6dSSatish Balay sum1 = y[0]; sum2 = y[1]; sum3 = y[2]; sum4 = y[3]; 1277f44d3a6dSSatish Balay for ( j=0; j<n; j++ ) { 1278f44d3a6dSSatish Balay xb = x + 4*(*idx++); 1279f44d3a6dSSatish Balay x1 = xb[0]; x2 = xb[1]; x3 = xb[2]; x4 = xb[3]; 1280f44d3a6dSSatish Balay sum1 += v[0]*x1 + v[4]*x2 + v[8]*x3 + v[12]*x4; 1281f44d3a6dSSatish Balay sum2 += v[1]*x1 + v[5]*x2 + v[9]*x3 + v[13]*x4; 1282f44d3a6dSSatish Balay sum3 += v[2]*x1 + v[6]*x2 + v[10]*x3 + v[14]*x4; 1283f44d3a6dSSatish Balay sum4 += v[3]*x1 + v[7]*x2 + v[11]*x3 + v[15]*x4; 1284f44d3a6dSSatish Balay v += 16; 1285f44d3a6dSSatish Balay } 1286f44d3a6dSSatish Balay z[0] = sum1; z[1] = sum2; z[2] = sum3; z[3] = sum4; 1287f44d3a6dSSatish Balay z += 4; y += 4; 1288f44d3a6dSSatish Balay } 1289c16cb8f2SBarry Smith VecRestoreArray_Fast(xx,x); 1290c16cb8f2SBarry Smith VecRestoreArray_Fast(yy,y); 1291c16cb8f2SBarry Smith VecRestoreArray_Fast(zz,z); 1292f44d3a6dSSatish Balay PLogFlops(32*a->nz); 12933a40ed3dSBarry Smith PetscFunctionReturn(0); 1294f44d3a6dSSatish Balay } 1295f44d3a6dSSatish Balay 12965615d1e5SSatish Balay #undef __FUNC__ 12975615d1e5SSatish Balay #define __FUNC__ "MatMultAdd_SeqBAIJ_5" 1298f44d3a6dSSatish Balay static int MatMultAdd_SeqBAIJ_5(Mat A,Vec xx,Vec yy,Vec zz) 1299f44d3a6dSSatish Balay { 1300f44d3a6dSSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 13013a40ed3dSBarry Smith register Scalar *x,*y,*z,*v,*xb,sum1,sum2,sum3,sum4,sum5,x1,x2,x3,x4,x5; 1302c16cb8f2SBarry Smith int mbs=a->mbs,i,*idx,*ii,j,n; 1303f44d3a6dSSatish Balay 13043a40ed3dSBarry Smith PetscFunctionBegin; 1305c16cb8f2SBarry Smith VecGetArray_Fast(xx,x); 1306c16cb8f2SBarry Smith VecGetArray_Fast(yy,y); 1307c16cb8f2SBarry Smith VecGetArray_Fast(zz,z); 1308f44d3a6dSSatish Balay 1309f44d3a6dSSatish Balay idx = a->j; 1310f44d3a6dSSatish Balay v = a->a; 1311f44d3a6dSSatish Balay ii = a->i; 1312f44d3a6dSSatish Balay 1313f44d3a6dSSatish Balay for ( i=0; i<mbs; i++ ) { 1314f44d3a6dSSatish Balay n = ii[1] - ii[0]; ii++; 1315f44d3a6dSSatish Balay sum1 = y[0]; sum2 = y[1]; sum3 = y[2]; sum4 = y[3]; sum5 = y[4]; 1316f44d3a6dSSatish Balay for ( j=0; j<n; j++ ) { 1317f44d3a6dSSatish Balay xb = x + 5*(*idx++); 1318f44d3a6dSSatish Balay x1 = xb[0]; x2 = xb[1]; x3 = xb[2]; x4 = xb[3]; x5 = xb[4]; 1319f44d3a6dSSatish Balay sum1 += v[0]*x1 + v[5]*x2 + v[10]*x3 + v[15]*x4 + v[20]*x5; 1320f44d3a6dSSatish Balay sum2 += v[1]*x1 + v[6]*x2 + v[11]*x3 + v[16]*x4 + v[21]*x5; 1321f44d3a6dSSatish Balay sum3 += v[2]*x1 + v[7]*x2 + v[12]*x3 + v[17]*x4 + v[22]*x5; 1322f44d3a6dSSatish Balay sum4 += v[3]*x1 + v[8]*x2 + v[13]*x3 + v[18]*x4 + v[23]*x5; 1323f44d3a6dSSatish Balay sum5 += v[4]*x1 + v[9]*x2 + v[14]*x3 + v[19]*x4 + v[24]*x5; 1324f44d3a6dSSatish Balay v += 25; 1325f44d3a6dSSatish Balay } 1326f44d3a6dSSatish Balay z[0] = sum1; z[1] = sum2; z[2] = sum3; z[3] = sum4; z[4] = sum5; 1327f44d3a6dSSatish Balay z += 5; y += 5; 1328f44d3a6dSSatish Balay } 1329c16cb8f2SBarry Smith VecRestoreArray_Fast(xx,x); 1330c16cb8f2SBarry Smith VecRestoreArray_Fast(yy,y); 1331c16cb8f2SBarry Smith VecRestoreArray_Fast(zz,z); 1332f44d3a6dSSatish Balay PLogFlops(50*a->nz); 13333a40ed3dSBarry Smith PetscFunctionReturn(0); 1334f44d3a6dSSatish Balay } 1335f44d3a6dSSatish Balay 13365615d1e5SSatish Balay #undef __FUNC__ 133748e9ddb2SSatish Balay #define __FUNC__ "MatMultAdd_SeqBAIJ_7" 133848e9ddb2SSatish Balay static int MatMultAdd_SeqBAIJ_7(Mat A,Vec xx,Vec yy,Vec zz) 133948e9ddb2SSatish Balay { 134048e9ddb2SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 134148e9ddb2SSatish Balay register Scalar *x,*y,*z,*v,*xb,sum1,sum2,sum3,sum4,sum5,sum6,sum7; 134248e9ddb2SSatish Balay register Scalar x1,x2,x3,x4,x5,x6,x7; 134348e9ddb2SSatish Balay int mbs=a->mbs,i,*idx,*ii,j,n; 134448e9ddb2SSatish Balay 13453a40ed3dSBarry Smith PetscFunctionBegin; 134648e9ddb2SSatish Balay VecGetArray_Fast(xx,x); 134748e9ddb2SSatish Balay VecGetArray_Fast(yy,y); 134848e9ddb2SSatish Balay VecGetArray_Fast(zz,z); 134948e9ddb2SSatish Balay 135048e9ddb2SSatish Balay idx = a->j; 135148e9ddb2SSatish Balay v = a->a; 135248e9ddb2SSatish Balay ii = a->i; 135348e9ddb2SSatish Balay 135448e9ddb2SSatish Balay for ( i=0; i<mbs; i++ ) { 135548e9ddb2SSatish Balay n = ii[1] - ii[0]; ii++; 135648e9ddb2SSatish Balay sum1 = y[0]; sum2 = y[1]; sum3 = y[2]; sum4 = y[3]; sum5 = y[4]; sum6 = y[5]; sum7 = y[6]; 135748e9ddb2SSatish Balay for ( j=0; j<n; j++ ) { 135848e9ddb2SSatish Balay xb = x + 7*(*idx++); 135948e9ddb2SSatish Balay x1 = xb[0]; x2 = xb[1]; x3 = xb[2]; x4 = xb[3]; x5 = xb[4]; x6 = xb[5]; x7 = xb[6]; 136048e9ddb2SSatish Balay sum1 += v[0]*x1 + v[7]*x2 + v[14]*x3 + v[21]*x4 + v[28]*x5 + v[35]*x6 + v[42]*x7; 136148e9ddb2SSatish Balay sum2 += v[1]*x1 + v[8]*x2 + v[15]*x3 + v[22]*x4 + v[29]*x5 + v[36]*x6 + v[43]*x7; 136248e9ddb2SSatish Balay sum3 += v[2]*x1 + v[9]*x2 + v[16]*x3 + v[23]*x4 + v[30]*x5 + v[37]*x6 + v[44]*x7; 136348e9ddb2SSatish Balay sum4 += v[3]*x1 + v[10]*x2 + v[17]*x3 + v[24]*x4 + v[31]*x5 + v[38]*x6 + v[45]*x7; 136448e9ddb2SSatish Balay sum5 += v[4]*x1 + v[11]*x2 + v[18]*x3 + v[25]*x4 + v[32]*x5 + v[39]*x6 + v[46]*x7; 136548e9ddb2SSatish Balay sum6 += v[5]*x1 + v[12]*x2 + v[19]*x3 + v[26]*x4 + v[33]*x5 + v[40]*x6 + v[47]*x7; 136648e9ddb2SSatish Balay sum7 += v[6]*x1 + v[13]*x2 + v[20]*x3 + v[27]*x4 + v[34]*x5 + v[41]*x6 + v[48]*x7; 136748e9ddb2SSatish Balay v += 49; 136848e9ddb2SSatish Balay } 136948e9ddb2SSatish Balay z[0] = sum1; z[1] = sum2; z[2] = sum3; z[3] = sum4; z[4] = sum5; z[5] = sum6; z[6] = sum7; 137048e9ddb2SSatish Balay z += 7; y += 7; 137148e9ddb2SSatish Balay } 137248e9ddb2SSatish Balay VecRestoreArray_Fast(xx,x); 137348e9ddb2SSatish Balay VecRestoreArray_Fast(yy,y); 137448e9ddb2SSatish Balay VecRestoreArray_Fast(zz,z); 137548e9ddb2SSatish Balay PLogFlops(98*a->nz); 13763a40ed3dSBarry Smith PetscFunctionReturn(0); 137748e9ddb2SSatish Balay } 137848e9ddb2SSatish Balay 137948e9ddb2SSatish Balay 138048e9ddb2SSatish Balay #undef __FUNC__ 13815615d1e5SSatish Balay #define __FUNC__ "MatMultAdd_SeqBAIJ_N" 1382f44d3a6dSSatish Balay static int MatMultAdd_SeqBAIJ_N(Mat A,Vec xx,Vec yy,Vec zz) 1383f44d3a6dSSatish Balay { 1384f44d3a6dSSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 1385f44d3a6dSSatish Balay register Scalar *x,*z,*v,*xb; 1386f44d3a6dSSatish Balay int mbs=a->mbs,i,*idx,*ii,bs=a->bs,j,n,bs2=a->bs2,ierr; 1387f44d3a6dSSatish Balay int _One = 1,ncols,k; Scalar _DOne = 1.0, *work,*workt; 1388f44d3a6dSSatish Balay 13893a40ed3dSBarry Smith PetscFunctionBegin; 1390f44d3a6dSSatish Balay if ( xx != yy) { ierr = VecCopy(yy,zz); CHKERRQ(ierr); } 1391f44d3a6dSSatish Balay 1392c16cb8f2SBarry Smith VecGetArray_Fast(xx,x); 1393c16cb8f2SBarry Smith VecGetArray_Fast(zz,z); 1394f44d3a6dSSatish Balay 1395f44d3a6dSSatish Balay idx = a->j; 1396f44d3a6dSSatish Balay v = a->a; 1397f44d3a6dSSatish Balay ii = a->i; 1398f44d3a6dSSatish Balay 1399f44d3a6dSSatish Balay 1400f44d3a6dSSatish Balay if (!a->mult_work) { 1401f44d3a6dSSatish Balay k = PetscMax(a->m,a->n); 1402f44d3a6dSSatish Balay a->mult_work = (Scalar *) PetscMalloc(k*sizeof(Scalar));CHKPTRQ(a->mult_work); 1403f44d3a6dSSatish Balay } 1404f44d3a6dSSatish Balay work = a->mult_work; 1405f44d3a6dSSatish Balay for ( i=0; i<mbs; i++ ) { 1406f44d3a6dSSatish Balay n = ii[1] - ii[0]; ii++; 1407f44d3a6dSSatish Balay ncols = n*bs; 1408f44d3a6dSSatish Balay workt = work; 1409f44d3a6dSSatish Balay for ( j=0; j<n; j++ ) { 1410f44d3a6dSSatish Balay xb = x + bs*(*idx++); 1411f44d3a6dSSatish Balay for ( k=0; k<bs; k++ ) workt[k] = xb[k]; 1412f44d3a6dSSatish Balay workt += bs; 1413f44d3a6dSSatish Balay } 1414f44d3a6dSSatish Balay LAgemv_("N",&bs,&ncols,&_DOne,v,&bs,work,&_One,&_DOne,z,&_One); 1415f44d3a6dSSatish Balay v += n*bs2; 1416f44d3a6dSSatish Balay z += bs; 1417f44d3a6dSSatish Balay } 1418c16cb8f2SBarry Smith VecRestoreArray_Fast(xx,x); 1419c16cb8f2SBarry Smith VecRestoreArray_Fast(zz,z); 1420f44d3a6dSSatish Balay PLogFlops(2*a->nz*bs2 ); 14213a40ed3dSBarry Smith PetscFunctionReturn(0); 1422f44d3a6dSSatish Balay } 1423f44d3a6dSSatish Balay 14245615d1e5SSatish Balay #undef __FUNC__ 14255615d1e5SSatish Balay #define __FUNC__ "MatMultTrans_SeqBAIJ" 14268f6be9afSLois Curfman McInnes int MatMultTrans_SeqBAIJ(Mat A,Vec xx,Vec zz) 1427bb42667fSSatish Balay { 1428bb42667fSSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 14291a6a6d98SBarry Smith Scalar *xg,*zg,*zb; 1430bb42667fSSatish Balay register Scalar *x,*z,*v,*xb,x1,x2,x3,x4,x5; 1431bb1453f0SSatish Balay int mbs=a->mbs,i,*idx,*ii,*ai=a->i,rval,N=a->n; 14329df24120SSatish Balay int bs=a->bs,j,n,bs2=a->bs2,*ib,ierr; 1433119a934aSSatish Balay 1434119a934aSSatish Balay 14353a40ed3dSBarry Smith PetscFunctionBegin; 143690f02eecSBarry Smith VecGetArray_Fast(xx,xg); x = xg; 143790f02eecSBarry Smith VecGetArray_Fast(zz,zg); z = zg; 1438bb1453f0SSatish Balay PetscMemzero(z,N*sizeof(Scalar)); 1439bb42667fSSatish Balay 1440119a934aSSatish Balay idx = a->j; 1441119a934aSSatish Balay v = a->a; 1442119a934aSSatish Balay ii = a->i; 1443119a934aSSatish Balay 1444119a934aSSatish Balay switch (bs) { 1445119a934aSSatish Balay case 1: 1446119a934aSSatish Balay for ( i=0; i<mbs; i++ ) { 1447119a934aSSatish Balay n = ii[1] - ii[0]; ii++; 1448119a934aSSatish Balay xb = x + i; x1 = xb[0]; 1449119a934aSSatish Balay ib = idx + ai[i]; 1450119a934aSSatish Balay for ( j=0; j<n; j++ ) { 1451bb1453f0SSatish Balay rval = ib[j]; 1452bb1453f0SSatish Balay z[rval] += *v++ * x1; 1453119a934aSSatish Balay } 1454119a934aSSatish Balay } 1455119a934aSSatish Balay break; 1456119a934aSSatish Balay case 2: 1457119a934aSSatish Balay for ( i=0; i<mbs; i++ ) { 1458119a934aSSatish Balay n = ii[1] - ii[0]; ii++; 1459119a934aSSatish Balay xb = x + 2*i; x1 = xb[0]; x2 = xb[1]; 1460119a934aSSatish Balay ib = idx + ai[i]; 1461119a934aSSatish Balay for ( j=0; j<n; j++ ) { 1462119a934aSSatish Balay rval = ib[j]*2; 1463bb1453f0SSatish Balay z[rval++] += v[0]*x1 + v[1]*x2; 1464bb1453f0SSatish Balay z[rval++] += v[2]*x1 + v[3]*x2; 1465119a934aSSatish Balay v += 4; 1466119a934aSSatish Balay } 1467119a934aSSatish Balay } 1468119a934aSSatish Balay break; 1469119a934aSSatish Balay case 3: 1470119a934aSSatish Balay for ( i=0; i<mbs; i++ ) { 1471119a934aSSatish Balay n = ii[1] - ii[0]; ii++; 1472119a934aSSatish Balay xb = x + 3*i; x1 = xb[0]; x2 = xb[1]; x3 = xb[2]; 1473119a934aSSatish Balay ib = idx + ai[i]; 1474119a934aSSatish Balay for ( j=0; j<n; j++ ) { 1475119a934aSSatish Balay rval = ib[j]*3; 1476bb1453f0SSatish Balay z[rval++] += v[0]*x1 + v[1]*x2 + v[2]*x3; 1477bb1453f0SSatish Balay z[rval++] += v[3]*x1 + v[4]*x2 + v[5]*x3; 1478bb1453f0SSatish Balay z[rval++] += v[6]*x1 + v[7]*x2 + v[8]*x3; 1479119a934aSSatish Balay v += 9; 1480119a934aSSatish Balay } 1481119a934aSSatish Balay } 1482119a934aSSatish Balay break; 1483119a934aSSatish Balay case 4: 1484119a934aSSatish Balay for ( i=0; i<mbs; i++ ) { 1485119a934aSSatish Balay n = ii[1] - ii[0]; ii++; 1486119a934aSSatish Balay xb = x + 4*i; x1 = xb[0]; x2 = xb[1]; x3 = xb[2]; x4 = xb[3]; 1487119a934aSSatish Balay ib = idx + ai[i]; 1488119a934aSSatish Balay for ( j=0; j<n; j++ ) { 1489119a934aSSatish Balay rval = ib[j]*4; 1490bb1453f0SSatish Balay z[rval++] += v[0]*x1 + v[1]*x2 + v[2]*x3 + v[3]*x4; 1491bb1453f0SSatish Balay z[rval++] += v[4]*x1 + v[5]*x2 + v[6]*x3 + v[7]*x4; 1492bb1453f0SSatish Balay z[rval++] += v[8]*x1 + v[9]*x2 + v[10]*x3 + v[11]*x4; 1493bb1453f0SSatish Balay z[rval++] += v[12]*x1 + v[13]*x2 + v[14]*x3 + v[15]*x4; 1494119a934aSSatish Balay v += 16; 1495119a934aSSatish Balay } 1496119a934aSSatish Balay } 1497119a934aSSatish Balay break; 1498119a934aSSatish Balay case 5: 1499119a934aSSatish Balay for ( i=0; i<mbs; i++ ) { 1500119a934aSSatish Balay n = ii[1] - ii[0]; ii++; 1501119a934aSSatish Balay xb = x + 5*i; x1 = xb[0]; x2 = xb[1]; x3 = xb[2]; 1502119a934aSSatish Balay x4 = xb[3]; x5 = xb[4]; 1503119a934aSSatish Balay ib = idx + ai[i]; 1504119a934aSSatish Balay for ( j=0; j<n; j++ ) { 1505119a934aSSatish Balay rval = ib[j]*5; 1506bb1453f0SSatish Balay z[rval++] += v[0]*x1 + v[1]*x2 + v[2]*x3 + v[3]*x4 + v[4]*x5; 1507bb1453f0SSatish Balay z[rval++] += v[5]*x1 + v[6]*x2 + v[7]*x3 + v[8]*x4 + v[9]*x5; 1508bb1453f0SSatish Balay z[rval++] += v[10]*x1 + v[11]*x2 + v[12]*x3 + v[13]*x4 + v[14]*x5; 1509bb1453f0SSatish Balay z[rval++] += v[15]*x1 + v[16]*x2 + v[17]*x3 + v[18]*x4 + v[19]*x5; 1510bb1453f0SSatish Balay z[rval++] += v[20]*x1 + v[21]*x2 + v[22]*x3 + v[23]*x4 + v[24]*x5; 1511119a934aSSatish Balay v += 25; 1512119a934aSSatish Balay } 1513119a934aSSatish Balay } 1514119a934aSSatish Balay break; 1515119a934aSSatish Balay /* block sizes larger then 5 by 5 are handled by BLAS */ 1516119a934aSSatish Balay default: { 1517119a934aSSatish Balay int _One = 1,ncols,k; Scalar _DOne = 1.0, *work,*workt; 1518119a934aSSatish Balay if (!a->mult_work) { 15193b547af2SSatish Balay k = PetscMax(a->m,a->n); 1520bb42667fSSatish Balay a->mult_work = (Scalar *) PetscMalloc(k*sizeof(Scalar)); 1521119a934aSSatish Balay CHKPTRQ(a->mult_work); 1522119a934aSSatish Balay } 1523119a934aSSatish Balay work = a->mult_work; 1524119a934aSSatish Balay for ( i=0; i<mbs; i++ ) { 1525119a934aSSatish Balay n = ii[1] - ii[0]; ii++; 1526119a934aSSatish Balay ncols = n*bs; 1527119a934aSSatish Balay PetscMemzero(work,ncols*sizeof(Scalar)); 1528119a934aSSatish Balay LAgemv_("T",&bs,&ncols,&_DOne,v,&bs,x,&_One,&_DOne,work,&_One); 1529119a934aSSatish Balay v += n*bs2; 1530119a934aSSatish Balay x += bs; 1531119a934aSSatish Balay workt = work; 1532119a934aSSatish Balay for ( j=0; j<n; j++ ) { 1533119a934aSSatish Balay zb = z + bs*(*idx++); 1534bb1453f0SSatish Balay for ( k=0; k<bs; k++ ) zb[k] += workt[k] ; 1535119a934aSSatish Balay workt += bs; 1536119a934aSSatish Balay } 1537119a934aSSatish Balay } 1538119a934aSSatish Balay } 1539119a934aSSatish Balay } 15400419e6cdSSatish Balay ierr = VecRestoreArray(xx,&xg); CHKERRQ(ierr); 15410419e6cdSSatish Balay ierr = VecRestoreArray(zz,&zg); CHKERRQ(ierr); 1542faf6580fSSatish Balay PLogFlops(2*a->nz*a->bs2 - a->n); 15433a40ed3dSBarry Smith PetscFunctionReturn(0); 1544faf6580fSSatish Balay } 15451c351548SSatish Balay 15465615d1e5SSatish Balay #undef __FUNC__ 15475615d1e5SSatish Balay #define __FUNC__ "MatMultTransAdd_SeqBAIJ" 15488f6be9afSLois Curfman McInnes int MatMultTransAdd_SeqBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1549faf6580fSSatish Balay { 1550faf6580fSSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 1551faf6580fSSatish Balay Scalar *xg,*zg,*zb; 1552faf6580fSSatish Balay register Scalar *x,*z,*v,*xb,x1,x2,x3,x4,x5; 1553faf6580fSSatish Balay int mbs=a->mbs,i,*idx,*ii,*ai=a->i,rval,N=a->n; 1554faf6580fSSatish Balay int bs=a->bs,j,n,bs2=a->bs2,*ib,ierr; 1555faf6580fSSatish Balay 15563a40ed3dSBarry Smith PetscFunctionBegin; 155790f02eecSBarry Smith VecGetArray_Fast(xx,xg); x = xg; 155890f02eecSBarry Smith VecGetArray_Fast(zz,zg); z = zg; 1559faf6580fSSatish Balay 1560648c1d95SSatish Balay if ( yy != zz ) { ierr = VecCopy(yy,zz); CHKERRQ(ierr); } 1561648c1d95SSatish Balay else PetscMemzero(z,N*sizeof(Scalar)); 1562648c1d95SSatish Balay 1563faf6580fSSatish Balay idx = a->j; 1564faf6580fSSatish Balay v = a->a; 1565faf6580fSSatish Balay ii = a->i; 1566faf6580fSSatish Balay 1567faf6580fSSatish Balay switch (bs) { 1568faf6580fSSatish Balay case 1: 1569faf6580fSSatish Balay for ( i=0; i<mbs; i++ ) { 1570faf6580fSSatish Balay n = ii[1] - ii[0]; ii++; 1571faf6580fSSatish Balay xb = x + i; x1 = xb[0]; 1572faf6580fSSatish Balay ib = idx + ai[i]; 1573faf6580fSSatish Balay for ( j=0; j<n; j++ ) { 1574faf6580fSSatish Balay rval = ib[j]; 1575faf6580fSSatish Balay z[rval] += *v++ * x1; 1576faf6580fSSatish Balay } 1577faf6580fSSatish Balay } 1578faf6580fSSatish Balay break; 1579faf6580fSSatish Balay case 2: 1580faf6580fSSatish Balay for ( i=0; i<mbs; i++ ) { 1581faf6580fSSatish Balay n = ii[1] - ii[0]; ii++; 1582faf6580fSSatish Balay xb = x + 2*i; x1 = xb[0]; x2 = xb[1]; 1583faf6580fSSatish Balay ib = idx + ai[i]; 1584faf6580fSSatish Balay for ( j=0; j<n; j++ ) { 1585faf6580fSSatish Balay rval = ib[j]*2; 1586faf6580fSSatish Balay z[rval++] += v[0]*x1 + v[1]*x2; 1587faf6580fSSatish Balay z[rval++] += v[2]*x1 + v[3]*x2; 1588faf6580fSSatish Balay v += 4; 1589faf6580fSSatish Balay } 1590faf6580fSSatish Balay } 1591faf6580fSSatish Balay break; 1592faf6580fSSatish Balay case 3: 1593faf6580fSSatish Balay for ( i=0; i<mbs; i++ ) { 1594faf6580fSSatish Balay n = ii[1] - ii[0]; ii++; 1595faf6580fSSatish Balay xb = x + 3*i; x1 = xb[0]; x2 = xb[1]; x3 = xb[2]; 1596faf6580fSSatish Balay ib = idx + ai[i]; 1597faf6580fSSatish Balay for ( j=0; j<n; j++ ) { 1598faf6580fSSatish Balay rval = ib[j]*3; 1599faf6580fSSatish Balay z[rval++] += v[0]*x1 + v[1]*x2 + v[2]*x3; 1600faf6580fSSatish Balay z[rval++] += v[3]*x1 + v[4]*x2 + v[5]*x3; 1601faf6580fSSatish Balay z[rval++] += v[6]*x1 + v[7]*x2 + v[8]*x3; 1602faf6580fSSatish Balay v += 9; 1603faf6580fSSatish Balay } 1604faf6580fSSatish Balay } 1605faf6580fSSatish Balay break; 1606faf6580fSSatish Balay case 4: 1607faf6580fSSatish Balay for ( i=0; i<mbs; i++ ) { 1608faf6580fSSatish Balay n = ii[1] - ii[0]; ii++; 1609faf6580fSSatish Balay xb = x + 4*i; x1 = xb[0]; x2 = xb[1]; x3 = xb[2]; x4 = xb[3]; 1610faf6580fSSatish Balay ib = idx + ai[i]; 1611faf6580fSSatish Balay for ( j=0; j<n; j++ ) { 1612faf6580fSSatish Balay rval = ib[j]*4; 1613faf6580fSSatish Balay z[rval++] += v[0]*x1 + v[1]*x2 + v[2]*x3 + v[3]*x4; 1614faf6580fSSatish Balay z[rval++] += v[4]*x1 + v[5]*x2 + v[6]*x3 + v[7]*x4; 1615faf6580fSSatish Balay z[rval++] += v[8]*x1 + v[9]*x2 + v[10]*x3 + v[11]*x4; 1616faf6580fSSatish Balay z[rval++] += v[12]*x1 + v[13]*x2 + v[14]*x3 + v[15]*x4; 1617faf6580fSSatish Balay v += 16; 1618faf6580fSSatish Balay } 1619faf6580fSSatish Balay } 1620faf6580fSSatish Balay break; 1621faf6580fSSatish Balay case 5: 1622faf6580fSSatish Balay for ( i=0; i<mbs; i++ ) { 1623faf6580fSSatish Balay n = ii[1] - ii[0]; ii++; 1624faf6580fSSatish Balay xb = x + 5*i; x1 = xb[0]; x2 = xb[1]; x3 = xb[2]; 1625faf6580fSSatish Balay x4 = xb[3]; x5 = xb[4]; 1626faf6580fSSatish Balay ib = idx + ai[i]; 1627faf6580fSSatish Balay for ( j=0; j<n; j++ ) { 1628faf6580fSSatish Balay rval = ib[j]*5; 1629faf6580fSSatish Balay z[rval++] += v[0]*x1 + v[1]*x2 + v[2]*x3 + v[3]*x4 + v[4]*x5; 1630faf6580fSSatish Balay z[rval++] += v[5]*x1 + v[6]*x2 + v[7]*x3 + v[8]*x4 + v[9]*x5; 1631faf6580fSSatish Balay z[rval++] += v[10]*x1 + v[11]*x2 + v[12]*x3 + v[13]*x4 + v[14]*x5; 1632faf6580fSSatish Balay z[rval++] += v[15]*x1 + v[16]*x2 + v[17]*x3 + v[18]*x4 + v[19]*x5; 1633faf6580fSSatish Balay z[rval++] += v[20]*x1 + v[21]*x2 + v[22]*x3 + v[23]*x4 + v[24]*x5; 1634faf6580fSSatish Balay v += 25; 1635faf6580fSSatish Balay } 1636faf6580fSSatish Balay } 1637faf6580fSSatish Balay break; 1638faf6580fSSatish Balay /* block sizes larger then 5 by 5 are handled by BLAS */ 1639faf6580fSSatish Balay default: { 1640faf6580fSSatish Balay int _One = 1,ncols,k; Scalar _DOne = 1.0, *work,*workt; 1641faf6580fSSatish Balay if (!a->mult_work) { 1642faf6580fSSatish Balay k = PetscMax(a->m,a->n); 1643faf6580fSSatish Balay a->mult_work = (Scalar *) PetscMalloc(k*sizeof(Scalar)); 1644faf6580fSSatish Balay CHKPTRQ(a->mult_work); 1645faf6580fSSatish Balay } 1646faf6580fSSatish Balay work = a->mult_work; 1647faf6580fSSatish Balay for ( i=0; i<mbs; i++ ) { 1648faf6580fSSatish Balay n = ii[1] - ii[0]; ii++; 1649faf6580fSSatish Balay ncols = n*bs; 1650faf6580fSSatish Balay PetscMemzero(work,ncols*sizeof(Scalar)); 1651faf6580fSSatish Balay LAgemv_("T",&bs,&ncols,&_DOne,v,&bs,x,&_One,&_DOne,work,&_One); 1652faf6580fSSatish Balay v += n*bs2; 1653faf6580fSSatish Balay x += bs; 1654faf6580fSSatish Balay workt = work; 1655faf6580fSSatish Balay for ( j=0; j<n; j++ ) { 1656faf6580fSSatish Balay zb = z + bs*(*idx++); 1657faf6580fSSatish Balay for ( k=0; k<bs; k++ ) zb[k] += workt[k] ; 1658faf6580fSSatish Balay workt += bs; 1659faf6580fSSatish Balay } 1660faf6580fSSatish Balay } 1661faf6580fSSatish Balay } 1662faf6580fSSatish Balay } 1663faf6580fSSatish Balay ierr = VecRestoreArray(xx,&xg); CHKERRQ(ierr); 1664faf6580fSSatish Balay ierr = VecRestoreArray(zz,&zg); CHKERRQ(ierr); 1665faf6580fSSatish Balay PLogFlops(2*a->nz*a->bs2); 16663a40ed3dSBarry Smith PetscFunctionReturn(0); 16672593348eSBarry Smith } 16682593348eSBarry Smith 16695615d1e5SSatish Balay #undef __FUNC__ 1670d4bb536fSBarry Smith #define __FUNC__ "MatGetInfo_SeqBAIJ" 16718f6be9afSLois Curfman McInnes int MatGetInfo_SeqBAIJ(Mat A,MatInfoType flag,MatInfo *info) 16722593348eSBarry Smith { 1673b6490206SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 16744e220ebcSLois Curfman McInnes 16753a40ed3dSBarry Smith PetscFunctionBegin; 16764e220ebcSLois Curfman McInnes info->rows_global = (double)a->m; 16774e220ebcSLois Curfman McInnes info->columns_global = (double)a->n; 16784e220ebcSLois Curfman McInnes info->rows_local = (double)a->m; 16794e220ebcSLois Curfman McInnes info->columns_local = (double)a->n; 16804e220ebcSLois Curfman McInnes info->block_size = a->bs2; 16814e220ebcSLois Curfman McInnes info->nz_allocated = a->maxnz; 16824e220ebcSLois Curfman McInnes info->nz_used = a->bs2*a->nz; 16834e220ebcSLois Curfman McInnes info->nz_unneeded = (double)(info->nz_allocated - info->nz_used); 16844e220ebcSLois Curfman McInnes /* if (info->nz_unneeded != A->info.nz_unneeded) 16854e220ebcSLois Curfman McInnes printf("space descrepancy: maxnz-nz = %d, nz_unneeded = %d\n",(int)info->nz_unneeded,(int)A->info.nz_unneeded); */ 16864e220ebcSLois Curfman McInnes info->assemblies = A->num_ass; 16874e220ebcSLois Curfman McInnes info->mallocs = a->reallocs; 16884e220ebcSLois Curfman McInnes info->memory = A->mem; 16894e220ebcSLois Curfman McInnes if (A->factor) { 16904e220ebcSLois Curfman McInnes info->fill_ratio_given = A->info.fill_ratio_given; 16914e220ebcSLois Curfman McInnes info->fill_ratio_needed = A->info.fill_ratio_needed; 16924e220ebcSLois Curfman McInnes info->factor_mallocs = A->info.factor_mallocs; 16934e220ebcSLois Curfman McInnes } else { 16944e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; 16954e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 16964e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 16974e220ebcSLois Curfman McInnes } 16983a40ed3dSBarry Smith PetscFunctionReturn(0); 16992593348eSBarry Smith } 17002593348eSBarry Smith 17015615d1e5SSatish Balay #undef __FUNC__ 17025615d1e5SSatish Balay #define __FUNC__ "MatEqual_SeqBAIJ" 17038f6be9afSLois Curfman McInnes int MatEqual_SeqBAIJ(Mat A,Mat B, PetscTruth* flg) 170491d316f6SSatish Balay { 170591d316f6SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data, *b = (Mat_SeqBAIJ *)B->data; 170691d316f6SSatish Balay 17073a40ed3dSBarry Smith PetscFunctionBegin; 1708a8c6a408SBarry Smith if (B->type !=MATSEQBAIJ) SETERRQ(PETSC_ERR_ARG_INCOMP,0,"Matrices must be same type"); 170991d316f6SSatish Balay 171091d316f6SSatish Balay /* If the matrix/block dimensions are not equal, or no of nonzeros or shift */ 17113a40ed3dSBarry Smith if ((a->m != b->m) || (a->n !=b->n) || (a->bs != b->bs)|| (a->nz != b->nz)) { 17123a40ed3dSBarry Smith *flg = PETSC_FALSE; PetscFunctionReturn(0); 171391d316f6SSatish Balay } 171491d316f6SSatish Balay 171591d316f6SSatish Balay /* if the a->i are the same */ 171691d316f6SSatish Balay if (PetscMemcmp(a->i,b->i, (a->mbs+1)*sizeof(int))) { 17173a40ed3dSBarry Smith *flg = PETSC_FALSE; PetscFunctionReturn(0); 171891d316f6SSatish Balay } 171991d316f6SSatish Balay 172091d316f6SSatish Balay /* if a->j are the same */ 172191d316f6SSatish Balay if (PetscMemcmp(a->j,b->j,(a->nz)*sizeof(int))) { 17223a40ed3dSBarry Smith *flg = PETSC_FALSE; PetscFunctionReturn(0); 172391d316f6SSatish Balay } 172491d316f6SSatish Balay 172591d316f6SSatish Balay /* if a->a are the same */ 172691d316f6SSatish Balay if (PetscMemcmp(a->a, b->a,(a->nz)*(a->bs)*(a->bs)*sizeof(Scalar))) { 17273a40ed3dSBarry Smith *flg = PETSC_FALSE; PetscFunctionReturn(0); 172891d316f6SSatish Balay } 172991d316f6SSatish Balay *flg = PETSC_TRUE; 17303a40ed3dSBarry Smith PetscFunctionReturn(0); 173191d316f6SSatish Balay 173291d316f6SSatish Balay } 173391d316f6SSatish Balay 17345615d1e5SSatish Balay #undef __FUNC__ 17355615d1e5SSatish Balay #define __FUNC__ "MatGetDiagonal_SeqBAIJ" 17368f6be9afSLois Curfman McInnes int MatGetDiagonal_SeqBAIJ(Mat A,Vec v) 173791d316f6SSatish Balay { 173891d316f6SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 17397e67e3f9SSatish Balay int i,j,k,n,row,bs,*ai,*aj,ambs,bs2; 174017e48fc4SSatish Balay Scalar *x, zero = 0.0,*aa,*aa_j; 174117e48fc4SSatish Balay 17423a40ed3dSBarry Smith PetscFunctionBegin; 1743a8c6a408SBarry Smith if (A->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,0,"Not for factored matrix"); 174417e48fc4SSatish Balay bs = a->bs; 174517e48fc4SSatish Balay aa = a->a; 174617e48fc4SSatish Balay ai = a->i; 174717e48fc4SSatish Balay aj = a->j; 174817e48fc4SSatish Balay ambs = a->mbs; 17499df24120SSatish Balay bs2 = a->bs2; 175091d316f6SSatish Balay 175191d316f6SSatish Balay VecSet(&zero,v); 175290f02eecSBarry Smith VecGetArray_Fast(v,x); VecGetLocalSize_Fast(v,n); 1753a8c6a408SBarry Smith if (n != a->m) SETERRQ(PETSC_ERR_ARG_SIZ,0,"Nonconforming matrix and vector"); 175417e48fc4SSatish Balay for ( i=0; i<ambs; i++ ) { 175517e48fc4SSatish Balay for ( j=ai[i]; j<ai[i+1]; j++ ) { 175617e48fc4SSatish Balay if (aj[j] == i) { 175717e48fc4SSatish Balay row = i*bs; 17587e67e3f9SSatish Balay aa_j = aa+j*bs2; 17597e67e3f9SSatish Balay for (k=0; k<bs2; k+=(bs+1),row++) x[row] = aa_j[k]; 176091d316f6SSatish Balay break; 176191d316f6SSatish Balay } 176291d316f6SSatish Balay } 176391d316f6SSatish Balay } 17643a40ed3dSBarry Smith PetscFunctionReturn(0); 176591d316f6SSatish Balay } 176691d316f6SSatish Balay 17675615d1e5SSatish Balay #undef __FUNC__ 17685615d1e5SSatish Balay #define __FUNC__ "MatDiagonalScale_SeqBAIJ" 17698f6be9afSLois Curfman McInnes int MatDiagonalScale_SeqBAIJ(Mat A,Vec ll,Vec rr) 17709867e207SSatish Balay { 17719867e207SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 17729867e207SSatish Balay Scalar *l,*r,x,*v,*aa,*li,*ri; 17737e67e3f9SSatish Balay int i,j,k,lm,rn,M,m,n,*ai,*aj,mbs,tmp,bs,bs2; 17749867e207SSatish Balay 17753a40ed3dSBarry Smith PetscFunctionBegin; 17769867e207SSatish Balay ai = a->i; 17779867e207SSatish Balay aj = a->j; 17789867e207SSatish Balay aa = a->a; 17799867e207SSatish Balay m = a->m; 17809867e207SSatish Balay n = a->n; 17819867e207SSatish Balay bs = a->bs; 17829867e207SSatish Balay mbs = a->mbs; 17839df24120SSatish Balay bs2 = a->bs2; 17849867e207SSatish Balay if (ll) { 178590f02eecSBarry Smith VecGetArray_Fast(ll,l); VecGetLocalSize_Fast(ll,lm); 1786a8c6a408SBarry Smith if (lm != m) SETERRQ(PETSC_ERR_ARG_SIZ,0,"Left scaling vector wrong length"); 17879867e207SSatish Balay for ( i=0; i<mbs; i++ ) { /* for each block row */ 17889867e207SSatish Balay M = ai[i+1] - ai[i]; 17899867e207SSatish Balay li = l + i*bs; 17907e67e3f9SSatish Balay v = aa + bs2*ai[i]; 17919867e207SSatish Balay for ( j=0; j<M; j++ ) { /* for each block */ 17927e67e3f9SSatish Balay for ( k=0; k<bs2; k++ ) { 17939867e207SSatish Balay (*v++) *= li[k%bs]; 17949867e207SSatish Balay } 17959867e207SSatish Balay } 17969867e207SSatish Balay } 17979867e207SSatish Balay } 17989867e207SSatish Balay 17999867e207SSatish Balay if (rr) { 180090f02eecSBarry Smith VecGetArray_Fast(rr,r); VecGetLocalSize_Fast(rr,rn); 1801a8c6a408SBarry Smith if (rn != n) SETERRQ(PETSC_ERR_ARG_SIZ,0,"Right scaling vector wrong length"); 18029867e207SSatish Balay for ( i=0; i<mbs; i++ ) { /* for each block row */ 18039867e207SSatish Balay M = ai[i+1] - ai[i]; 18047e67e3f9SSatish Balay v = aa + bs2*ai[i]; 18059867e207SSatish Balay for ( j=0; j<M; j++ ) { /* for each block */ 18069867e207SSatish Balay ri = r + bs*aj[ai[i]+j]; 18079867e207SSatish Balay for ( k=0; k<bs; k++ ) { 18089867e207SSatish Balay x = ri[k]; 18099867e207SSatish Balay for ( tmp=0; tmp<bs; tmp++ ) (*v++) *= x; 18109867e207SSatish Balay } 18119867e207SSatish Balay } 18129867e207SSatish Balay } 18139867e207SSatish Balay } 18143a40ed3dSBarry Smith PetscFunctionReturn(0); 18159867e207SSatish Balay } 18169867e207SSatish Balay 18179867e207SSatish Balay 1818b6490206SBarry Smith extern int MatLUFactorSymbolic_SeqBAIJ(Mat,IS,IS,double,Mat*); 1819b6490206SBarry Smith extern int MatLUFactor_SeqBAIJ(Mat,IS,IS,double); 18202a38ea04SSatish Balay extern int MatIncreaseOverlap_SeqBAIJ(Mat,int,IS*,int); 1821736121d4SSatish Balay extern int MatGetSubMatrix_SeqBAIJ(Mat,IS,IS,MatGetSubMatrixCall,Mat*); 1822736121d4SSatish Balay extern int MatGetSubMatrices_SeqBAIJ(Mat,int,IS*,IS*,MatGetSubMatrixCall,Mat**); 18231a6a6d98SBarry Smith 18241a6a6d98SBarry Smith extern int MatSolve_SeqBAIJ_N(Mat,Vec,Vec); 18251a6a6d98SBarry Smith extern int MatSolve_SeqBAIJ_1(Mat,Vec,Vec); 18261a6a6d98SBarry Smith extern int MatSolve_SeqBAIJ_2(Mat,Vec,Vec); 18271a6a6d98SBarry Smith extern int MatSolve_SeqBAIJ_3(Mat,Vec,Vec); 18281a6a6d98SBarry Smith extern int MatSolve_SeqBAIJ_4(Mat,Vec,Vec); 18291a6a6d98SBarry Smith extern int MatSolve_SeqBAIJ_5(Mat,Vec,Vec); 183048e9ddb2SSatish Balay extern int MatSolve_SeqBAIJ_7(Mat,Vec,Vec); 18311a6a6d98SBarry Smith 18327fc0212eSBarry Smith extern int MatLUFactorNumeric_SeqBAIJ_N(Mat,Mat*); 18337fc0212eSBarry Smith extern int MatLUFactorNumeric_SeqBAIJ_1(Mat,Mat*); 18347fc0212eSBarry Smith extern int MatLUFactorNumeric_SeqBAIJ_2(Mat,Mat*); 18357fc0212eSBarry Smith extern int MatLUFactorNumeric_SeqBAIJ_3(Mat,Mat*); 18367fc0212eSBarry Smith extern int MatLUFactorNumeric_SeqBAIJ_4(Mat,Mat*); 18377fc0212eSBarry Smith extern int MatLUFactorNumeric_SeqBAIJ_5(Mat,Mat*); 18382593348eSBarry Smith 18395615d1e5SSatish Balay #undef __FUNC__ 18405615d1e5SSatish Balay #define __FUNC__ "MatNorm_SeqBAIJ" 18418f6be9afSLois Curfman McInnes int MatNorm_SeqBAIJ(Mat A,NormType type,double *norm) 18422593348eSBarry Smith { 1843b6490206SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 18442593348eSBarry Smith Scalar *v = a->a; 18452593348eSBarry Smith double sum = 0.0; 18469df24120SSatish Balay int i,nz=a->nz,bs2=a->bs2; 18472593348eSBarry Smith 18483a40ed3dSBarry Smith PetscFunctionBegin; 18492593348eSBarry Smith if (type == NORM_FROBENIUS) { 18500419e6cdSSatish Balay for (i=0; i< bs2*nz; i++ ) { 18513a40ed3dSBarry Smith #if defined(USE_PETSC_COMPLEX) 18522593348eSBarry Smith sum += real(conj(*v)*(*v)); v++; 18532593348eSBarry Smith #else 18542593348eSBarry Smith sum += (*v)*(*v); v++; 18552593348eSBarry Smith #endif 18562593348eSBarry Smith } 18572593348eSBarry Smith *norm = sqrt(sum); 18582593348eSBarry Smith } 18592593348eSBarry Smith else { 1860e3372554SBarry Smith SETERRQ(PETSC_ERR_SUP,0,"No support for this norm yet"); 18612593348eSBarry Smith } 18623a40ed3dSBarry Smith PetscFunctionReturn(0); 18632593348eSBarry Smith } 18642593348eSBarry Smith 18653eee16b0SBarry Smith extern int MatSolve_SeqBAIJ_4_NaturalOrdering(Mat,Vec,Vec); 18662593348eSBarry Smith /* 18672593348eSBarry Smith note: This can only work for identity for row and col. It would 18682593348eSBarry Smith be good to check this and otherwise generate an error. 18692593348eSBarry Smith */ 18705615d1e5SSatish Balay #undef __FUNC__ 18715615d1e5SSatish Balay #define __FUNC__ "MatILUFactor_SeqBAIJ" 18728f6be9afSLois Curfman McInnes int MatILUFactor_SeqBAIJ(Mat inA,IS row,IS col,double efill,int fill) 18732593348eSBarry Smith { 1874b6490206SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) inA->data; 18752593348eSBarry Smith Mat outA; 1876de6a44a3SBarry Smith int ierr; 18772593348eSBarry Smith 18783a40ed3dSBarry Smith PetscFunctionBegin; 1879a8c6a408SBarry Smith if (fill != 0) SETERRQ(PETSC_ERR_SUP,0,"Only fill=0 supported"); 18802593348eSBarry Smith 18812593348eSBarry Smith outA = inA; 18822593348eSBarry Smith inA->factor = FACTOR_LU; 18832593348eSBarry Smith a->row = row; 18842593348eSBarry Smith a->col = col; 18852593348eSBarry Smith 1886eed86810SBarry Smith if (!a->solve_work) { 1887de6a44a3SBarry Smith a->solve_work = (Scalar *) PetscMalloc((a->m+a->bs)*sizeof(Scalar));CHKPTRQ(a->solve_work); 1888eed86810SBarry Smith PLogObjectMemory(inA,(a->m+a->bs)*sizeof(Scalar)); 1889eed86810SBarry Smith } 18902593348eSBarry Smith 18912593348eSBarry Smith if (!a->diag) { 1892b6490206SBarry Smith ierr = MatMarkDiag_SeqBAIJ(inA); CHKERRQ(ierr); 18932593348eSBarry Smith } 18947fc0212eSBarry Smith ierr = MatLUFactorNumeric(inA,&outA); CHKERRQ(ierr); 18953eee16b0SBarry Smith 18963eee16b0SBarry Smith /* 18973eee16b0SBarry Smith Blocksize 4 has a special faster solver for ILU(0) factorization 18983eee16b0SBarry Smith with natural ordering 18993eee16b0SBarry Smith */ 19003eee16b0SBarry Smith if (a->bs == 4) { 19013eee16b0SBarry Smith inA->ops.solve = MatSolve_SeqBAIJ_4_NaturalOrdering; 19023eee16b0SBarry Smith } 19033eee16b0SBarry Smith 19043a40ed3dSBarry Smith PetscFunctionReturn(0); 19052593348eSBarry Smith } 19062593348eSBarry Smith 19075615d1e5SSatish Balay #undef __FUNC__ 19085615d1e5SSatish Balay #define __FUNC__ "MatScale_SeqBAIJ" 19098f6be9afSLois Curfman McInnes int MatScale_SeqBAIJ(Scalar *alpha,Mat inA) 19102593348eSBarry Smith { 1911b6490206SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) inA->data; 19129df24120SSatish Balay int one = 1, totalnz = a->bs2*a->nz; 19133a40ed3dSBarry Smith 19143a40ed3dSBarry Smith PetscFunctionBegin; 1915b6490206SBarry Smith BLscal_( &totalnz, alpha, a->a, &one ); 1916b6490206SBarry Smith PLogFlops(totalnz); 19173a40ed3dSBarry Smith PetscFunctionReturn(0); 19182593348eSBarry Smith } 19192593348eSBarry Smith 19205615d1e5SSatish Balay #undef __FUNC__ 19215615d1e5SSatish Balay #define __FUNC__ "MatGetValues_SeqBAIJ" 19228f6be9afSLois Curfman McInnes int MatGetValues_SeqBAIJ(Mat A,int m,int *im,int n,int *in,Scalar *v) 19237e67e3f9SSatish Balay { 19247e67e3f9SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data; 19257e67e3f9SSatish Balay int *rp, k, low, high, t, row, nrow, i, col, l, *aj = a->j; 1926a7c10996SSatish Balay int *ai = a->i, *ailen = a->ilen; 19279df24120SSatish Balay int brow,bcol,ridx,cidx,bs=a->bs,bs2=a->bs2; 19287e67e3f9SSatish Balay Scalar *ap, *aa = a->a, zero = 0.0; 19297e67e3f9SSatish Balay 19303a40ed3dSBarry Smith PetscFunctionBegin; 19317e67e3f9SSatish Balay for ( k=0; k<m; k++ ) { /* loop over rows */ 19327e67e3f9SSatish Balay row = im[k]; brow = row/bs; 1933a8c6a408SBarry Smith if (row < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative row"); 1934a8c6a408SBarry Smith if (row >= a->m) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large"); 1935a7c10996SSatish Balay rp = aj + ai[brow] ; ap = aa + bs2*ai[brow] ; 19367e67e3f9SSatish Balay nrow = ailen[brow]; 19377e67e3f9SSatish Balay for ( l=0; l<n; l++ ) { /* loop over columns */ 1938a8c6a408SBarry Smith if (in[l] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative column"); 1939a8c6a408SBarry Smith if (in[l] >= a->n) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Column too large"); 1940a7c10996SSatish Balay col = in[l] ; 19417e67e3f9SSatish Balay bcol = col/bs; 19427e67e3f9SSatish Balay cidx = col%bs; 19437e67e3f9SSatish Balay ridx = row%bs; 19447e67e3f9SSatish Balay high = nrow; 19457e67e3f9SSatish Balay low = 0; /* assume unsorted */ 19467e67e3f9SSatish Balay while (high-low > 5) { 19477e67e3f9SSatish Balay t = (low+high)/2; 19487e67e3f9SSatish Balay if (rp[t] > bcol) high = t; 19497e67e3f9SSatish Balay else low = t; 19507e67e3f9SSatish Balay } 19517e67e3f9SSatish Balay for ( i=low; i<high; i++ ) { 19527e67e3f9SSatish Balay if (rp[i] > bcol) break; 19537e67e3f9SSatish Balay if (rp[i] == bcol) { 19547e67e3f9SSatish Balay *v++ = ap[bs2*i+bs*cidx+ridx]; 19557e67e3f9SSatish Balay goto finished; 19567e67e3f9SSatish Balay } 19577e67e3f9SSatish Balay } 19587e67e3f9SSatish Balay *v++ = zero; 19597e67e3f9SSatish Balay finished:; 19607e67e3f9SSatish Balay } 19617e67e3f9SSatish Balay } 19623a40ed3dSBarry Smith PetscFunctionReturn(0); 19637e67e3f9SSatish Balay } 19647e67e3f9SSatish Balay 19655615d1e5SSatish Balay #undef __FUNC__ 1966d4bb536fSBarry Smith #define __FUNC__ "MatGetBlockSize_SeqBAIJ" 19678f6be9afSLois Curfman McInnes int MatGetBlockSize_SeqBAIJ(Mat mat, int *bs) 19685a838052SSatish Balay { 19695a838052SSatish Balay Mat_SeqBAIJ *baij = (Mat_SeqBAIJ *) mat->data; 19703a40ed3dSBarry Smith 19713a40ed3dSBarry Smith PetscFunctionBegin; 19725a838052SSatish Balay *bs = baij->bs; 19733a40ed3dSBarry Smith PetscFunctionReturn(0); 19745a838052SSatish Balay } 19755a838052SSatish Balay 1976d9b7c43dSSatish Balay /* idx should be of length atlease bs */ 19775615d1e5SSatish Balay #undef __FUNC__ 19785615d1e5SSatish Balay #define __FUNC__ "MatZeroRows_SeqBAIJ_Check_Block" 1979d9b7c43dSSatish Balay static int MatZeroRows_SeqBAIJ_Check_Block(int *idx, int bs, PetscTruth *flg) 1980d9b7c43dSSatish Balay { 1981d9b7c43dSSatish Balay int i,row; 19823a40ed3dSBarry Smith 19833a40ed3dSBarry Smith PetscFunctionBegin; 1984d9b7c43dSSatish Balay row = idx[0]; 19853a40ed3dSBarry Smith if (row%bs!=0) { *flg = PETSC_FALSE; PetscFunctionReturn(0); } 1986d9b7c43dSSatish Balay 1987d9b7c43dSSatish Balay for ( i=1; i<bs; i++ ) { 19883a40ed3dSBarry Smith if (row+i != idx[i]) { *flg = PETSC_FALSE; PetscFunctionReturn(0); } 1989d9b7c43dSSatish Balay } 1990d9b7c43dSSatish Balay *flg = PETSC_TRUE; 19913a40ed3dSBarry Smith PetscFunctionReturn(0); 1992d9b7c43dSSatish Balay } 1993d9b7c43dSSatish Balay 19945615d1e5SSatish Balay #undef __FUNC__ 19955615d1e5SSatish Balay #define __FUNC__ "MatZeroRows_SeqBAIJ" 19968f6be9afSLois Curfman McInnes int MatZeroRows_SeqBAIJ(Mat A,IS is, Scalar *diag) 1997d9b7c43dSSatish Balay { 1998d9b7c43dSSatish Balay Mat_SeqBAIJ *baij=(Mat_SeqBAIJ*)A->data; 1999d9b7c43dSSatish Balay IS is_local; 2000d9b7c43dSSatish Balay int ierr,i,j,count,m=baij->m,is_n,*is_idx,*rows,bs=baij->bs,bs2=baij->bs2; 2001d9b7c43dSSatish Balay PetscTruth flg; 2002d9b7c43dSSatish Balay Scalar zero = 0.0,*aa; 2003d9b7c43dSSatish Balay 20043a40ed3dSBarry Smith PetscFunctionBegin; 2005d9b7c43dSSatish Balay /* Make a copy of the IS and sort it */ 2006d9b7c43dSSatish Balay ierr = ISGetSize(is,&is_n);CHKERRQ(ierr); 2007d9b7c43dSSatish Balay ierr = ISGetIndices(is,&is_idx);CHKERRQ(ierr); 2008537820f0SBarry Smith ierr = ISCreateGeneral(A->comm,is_n,is_idx,&is_local); CHKERRQ(ierr); 2009d9b7c43dSSatish Balay ierr = ISSort(is_local); CHKERRQ(ierr); 2010d9b7c43dSSatish Balay ierr = ISGetIndices(is_local,&rows); CHKERRQ(ierr); 2011d9b7c43dSSatish Balay 2012d9b7c43dSSatish Balay i = 0; 2013d9b7c43dSSatish Balay while (i < is_n) { 2014a8c6a408SBarry Smith if (rows[i]<0 || rows[i]>m) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"row out of range"); 2015d9b7c43dSSatish Balay flg = PETSC_FALSE; 2016d9b7c43dSSatish Balay if (i+bs <= is_n) {ierr = MatZeroRows_SeqBAIJ_Check_Block(rows+i,bs,&flg); CHKERRQ(ierr); } 2017d9b7c43dSSatish Balay if (flg) { /* There exists a block of rows to be Zerowed */ 2018d9b7c43dSSatish Balay baij->ilen[rows[i]/bs] = 0; 2019d9b7c43dSSatish Balay i += bs; 2020d9b7c43dSSatish Balay } else { /* Zero out only the requested row */ 2021d9b7c43dSSatish Balay count = (baij->i[rows[i]/bs +1] - baij->i[rows[i]/bs])*bs; 2022d9b7c43dSSatish Balay aa = baij->a + baij->i[rows[i]/bs]*bs2 + (rows[i]%bs); 2023d9b7c43dSSatish Balay for ( j=0; j<count; j++ ) { 2024d9b7c43dSSatish Balay aa[0] = zero; 2025d9b7c43dSSatish Balay aa+=bs; 2026d9b7c43dSSatish Balay } 2027d9b7c43dSSatish Balay i++; 2028d9b7c43dSSatish Balay } 2029d9b7c43dSSatish Balay } 2030d9b7c43dSSatish Balay if (diag) { 2031d9b7c43dSSatish Balay for ( j=0; j<is_n; j++ ) { 2032d9b7c43dSSatish Balay ierr = (*A->ops.setvalues)(A,1,rows+j,1,rows+j,diag,INSERT_VALUES);CHKERRQ(ierr); 2033d9b7c43dSSatish Balay } 2034d9b7c43dSSatish Balay } 2035d9b7c43dSSatish Balay ierr = ISRestoreIndices(is,&is_idx); CHKERRQ(ierr); 2036d9b7c43dSSatish Balay ierr = ISRestoreIndices(is_local,&rows); CHKERRQ(ierr); 2037d9b7c43dSSatish Balay ierr = ISDestroy(is_local); CHKERRQ(ierr); 20389a8dea36SBarry Smith ierr = MatAssemblyEnd_SeqBAIJ(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 2039d9b7c43dSSatish Balay 20403a40ed3dSBarry Smith PetscFunctionReturn(0); 2041d9b7c43dSSatish Balay } 20421c351548SSatish Balay 20435615d1e5SSatish Balay #undef __FUNC__ 2044d4bb536fSBarry Smith #define __FUNC__ "MatPrintHelp_SeqBAIJ" 2045ba4ca20aSSatish Balay int MatPrintHelp_SeqBAIJ(Mat A) 2046ba4ca20aSSatish Balay { 2047ba4ca20aSSatish Balay static int called = 0; 2048ba4ca20aSSatish Balay MPI_Comm comm = A->comm; 2049ba4ca20aSSatish Balay 20503a40ed3dSBarry Smith PetscFunctionBegin; 20513a40ed3dSBarry Smith if (called) {PetscFunctionReturn(0);} else called = 1; 2052ba4ca20aSSatish Balay PetscPrintf(comm," Options for MATSEQBAIJ and MATMPIBAIJ matrix formats (the defaults):\n"); 2053ba4ca20aSSatish Balay PetscPrintf(comm," -mat_block_size <block_size>\n"); 20543a40ed3dSBarry Smith PetscFunctionReturn(0); 2055ba4ca20aSSatish Balay } 2056d9b7c43dSSatish Balay 20572593348eSBarry Smith /* -------------------------------------------------------------------*/ 2058cd0e1443SSatish Balay static struct _MatOps MatOps = {MatSetValues_SeqBAIJ, 20599867e207SSatish Balay MatGetRow_SeqBAIJ,MatRestoreRow_SeqBAIJ, 2060f44d3a6dSSatish Balay MatMult_SeqBAIJ_N,MatMultAdd_SeqBAIJ_N, 2061faf6580fSSatish Balay MatMultTrans_SeqBAIJ,MatMultTransAdd_SeqBAIJ, 20621a6a6d98SBarry Smith MatSolve_SeqBAIJ_N,0, 2063b6490206SBarry Smith 0,0, 2064de6a44a3SBarry Smith MatLUFactor_SeqBAIJ,0, 2065b6490206SBarry Smith 0, 2066f2501298SSatish Balay MatTranspose_SeqBAIJ, 206717e48fc4SSatish Balay MatGetInfo_SeqBAIJ,MatEqual_SeqBAIJ, 20689867e207SSatish Balay MatGetDiagonal_SeqBAIJ,MatDiagonalScale_SeqBAIJ,MatNorm_SeqBAIJ, 2069584200bdSSatish Balay 0,MatAssemblyEnd_SeqBAIJ, 2070b6490206SBarry Smith 0, 2071d9b7c43dSSatish Balay MatSetOption_SeqBAIJ,MatZeroEntries_SeqBAIJ,MatZeroRows_SeqBAIJ, 20727fc0212eSBarry Smith MatLUFactorSymbolic_SeqBAIJ,MatLUFactorNumeric_SeqBAIJ_N,0,0, 2073b6490206SBarry Smith MatGetSize_SeqBAIJ,MatGetSize_SeqBAIJ,MatGetOwnershipRange_SeqBAIJ, 2074de6a44a3SBarry Smith MatILUFactorSymbolic_SeqBAIJ,0, 2075d402145bSBarry Smith 0,0, 2076b6490206SBarry Smith MatConvertSameType_SeqBAIJ,0,0, 2077b6490206SBarry Smith MatILUFactor_SeqBAIJ,0,0, 2078af015674SSatish Balay MatGetSubMatrices_SeqBAIJ,MatIncreaseOverlap_SeqBAIJ, 20797e67e3f9SSatish Balay MatGetValues_SeqBAIJ,0, 2080ba4ca20aSSatish Balay MatPrintHelp_SeqBAIJ,MatScale_SeqBAIJ, 20813b2fbd54SBarry Smith 0,0,0,MatGetBlockSize_SeqBAIJ, 20823b2fbd54SBarry Smith MatGetRowIJ_SeqBAIJ, 208392c4ed94SBarry Smith MatRestoreRowIJ_SeqBAIJ, 208492c4ed94SBarry Smith 0,0,0,0,0,0, 208592c4ed94SBarry Smith MatSetValuesBlocked_SeqBAIJ}; 20862593348eSBarry Smith 20875615d1e5SSatish Balay #undef __FUNC__ 20885615d1e5SSatish Balay #define __FUNC__ "MatCreateSeqBAIJ" 20892593348eSBarry Smith /*@C 209044cd7ae7SLois Curfman McInnes MatCreateSeqBAIJ - Creates a sparse matrix in block AIJ (block 209144cd7ae7SLois Curfman McInnes compressed row) format. For good matrix assembly performance the 209244cd7ae7SLois Curfman McInnes user should preallocate the matrix storage by setting the parameter nz 20932bd5e0b2SLois Curfman McInnes (or the array nzz). By setting these parameters accurately, performance 20942bd5e0b2SLois Curfman McInnes during matrix assembly can be increased by more than a factor of 50. 20952593348eSBarry Smith 20962593348eSBarry Smith Input Parameters: 2097029af93fSBarry Smith . comm - MPI communicator, set to PETSC_COMM_SELF 2098b6490206SBarry Smith . bs - size of block 20992593348eSBarry Smith . m - number of rows 21002593348eSBarry Smith . n - number of columns 2101b6490206SBarry Smith . nz - number of block nonzeros per block row (same for all rows) 21022bd5e0b2SLois Curfman McInnes . nzz - array containing the number of block nonzeros in the various block rows 21032bd5e0b2SLois Curfman McInnes (possibly different for each block row) or PETSC_NULL 21042593348eSBarry Smith 21052593348eSBarry Smith Output Parameter: 21062593348eSBarry Smith . A - the matrix 21072593348eSBarry Smith 21080513a670SBarry Smith Options Database Keys: 21090513a670SBarry Smith $ -mat_no_unroll - uses code that does not unroll the loops in the 21100effe34fSLois Curfman McInnes $ block calculations (much slower) 21110513a670SBarry Smith $ -mat_block_size - size of the blocks to use 21120513a670SBarry Smith 21132593348eSBarry Smith Notes: 211444cd7ae7SLois Curfman McInnes The block AIJ format is fully compatible with standard Fortran 77 21152593348eSBarry Smith storage. That is, the stored row and column indices can begin at 211644cd7ae7SLois Curfman McInnes either one (as in Fortran) or zero. See the users' manual for details. 21172593348eSBarry Smith 21182593348eSBarry Smith Specify the preallocated storage with either nz or nnz (not both). 21192593348eSBarry Smith Set nz=PETSC_DEFAULT and nnz=PETSC_NULL for PETSc to control dynamic memory 21202593348eSBarry Smith allocation. For additional details, see the users manual chapter on 21216da5968aSLois Curfman McInnes matrices. 21222593348eSBarry Smith 212344cd7ae7SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues() 21242593348eSBarry Smith @*/ 2125b6490206SBarry Smith int MatCreateSeqBAIJ(MPI_Comm comm,int bs,int m,int n,int nz,int *nnz, Mat *A) 21262593348eSBarry Smith { 21272593348eSBarry Smith Mat B; 2128b6490206SBarry Smith Mat_SeqBAIJ *b; 21293b2fbd54SBarry Smith int i,len,ierr,flg,mbs=m/bs,nbs=n/bs,bs2=bs*bs,size; 21303b2fbd54SBarry Smith 21313a40ed3dSBarry Smith PetscFunctionBegin; 21323b2fbd54SBarry Smith MPI_Comm_size(comm,&size); 2133a8c6a408SBarry Smith if (size > 1) SETERRQ(PETSC_ERR_ARG_WRONG,0,"Comm must be of size 1"); 2134b6490206SBarry Smith 21350513a670SBarry Smith ierr = OptionsGetInt(PETSC_NULL,"-mat_block_size",&bs,&flg);CHKERRQ(ierr); 21360513a670SBarry Smith 21373a40ed3dSBarry Smith if (mbs*bs!=m || nbs*bs!=n) { 2138a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,0,"Number rows, cols must be divisible by blocksize"); 21393a40ed3dSBarry Smith } 21402593348eSBarry Smith 21412593348eSBarry Smith *A = 0; 2142d4bb536fSBarry Smith PetscHeaderCreate(B,_p_Mat,MAT_COOKIE,MATSEQBAIJ,comm,MatDestroy,MatView); 21432593348eSBarry Smith PLogObjectCreate(B); 2144b6490206SBarry Smith B->data = (void *) (b = PetscNew(Mat_SeqBAIJ)); CHKPTRQ(b); 214544cd7ae7SLois Curfman McInnes PetscMemzero(b,sizeof(Mat_SeqBAIJ)); 21462593348eSBarry Smith PetscMemcpy(&B->ops,&MatOps,sizeof(struct _MatOps)); 21471a6a6d98SBarry Smith ierr = OptionsHasName(PETSC_NULL,"-mat_no_unroll",&flg); CHKERRQ(ierr); 21481a6a6d98SBarry Smith if (!flg) { 21497fc0212eSBarry Smith switch (bs) { 21507fc0212eSBarry Smith case 1: 21517fc0212eSBarry Smith B->ops.lufactornumeric = MatLUFactorNumeric_SeqBAIJ_1; 21521a6a6d98SBarry Smith B->ops.solve = MatSolve_SeqBAIJ_1; 215339b95ed1SBarry Smith B->ops.mult = MatMult_SeqBAIJ_1; 2154f44d3a6dSSatish Balay B->ops.multadd = MatMultAdd_SeqBAIJ_1; 21557fc0212eSBarry Smith break; 21564eeb42bcSBarry Smith case 2: 21574eeb42bcSBarry Smith B->ops.lufactornumeric = MatLUFactorNumeric_SeqBAIJ_2; 21581a6a6d98SBarry Smith B->ops.solve = MatSolve_SeqBAIJ_2; 215939b95ed1SBarry Smith B->ops.mult = MatMult_SeqBAIJ_2; 2160f44d3a6dSSatish Balay B->ops.multadd = MatMultAdd_SeqBAIJ_2; 21616d84be18SBarry Smith break; 2162f327dd97SBarry Smith case 3: 2163f327dd97SBarry Smith B->ops.lufactornumeric = MatLUFactorNumeric_SeqBAIJ_3; 21641a6a6d98SBarry Smith B->ops.solve = MatSolve_SeqBAIJ_3; 216539b95ed1SBarry Smith B->ops.mult = MatMult_SeqBAIJ_3; 2166f44d3a6dSSatish Balay B->ops.multadd = MatMultAdd_SeqBAIJ_3; 21674eeb42bcSBarry Smith break; 21686d84be18SBarry Smith case 4: 21696d84be18SBarry Smith B->ops.lufactornumeric = MatLUFactorNumeric_SeqBAIJ_4; 21701a6a6d98SBarry Smith B->ops.solve = MatSolve_SeqBAIJ_4; 217139b95ed1SBarry Smith B->ops.mult = MatMult_SeqBAIJ_4; 2172f44d3a6dSSatish Balay B->ops.multadd = MatMultAdd_SeqBAIJ_4; 21736d84be18SBarry Smith break; 21746d84be18SBarry Smith case 5: 21756d84be18SBarry Smith B->ops.lufactornumeric = MatLUFactorNumeric_SeqBAIJ_5; 21761a6a6d98SBarry Smith B->ops.solve = MatSolve_SeqBAIJ_5; 217739b95ed1SBarry Smith B->ops.mult = MatMult_SeqBAIJ_5; 2178f44d3a6dSSatish Balay B->ops.multadd = MatMultAdd_SeqBAIJ_5; 21796d84be18SBarry Smith break; 218048e9ddb2SSatish Balay case 7: 218148e9ddb2SSatish Balay B->ops.mult = MatMult_SeqBAIJ_7; 218248e9ddb2SSatish Balay B->ops.solve = MatSolve_SeqBAIJ_7; 218348e9ddb2SSatish Balay B->ops.multadd = MatMultAdd_SeqBAIJ_7; 218448e9ddb2SSatish Balay break; 21857fc0212eSBarry Smith } 21861a6a6d98SBarry Smith } 2187b6490206SBarry Smith B->destroy = MatDestroy_SeqBAIJ; 2188b6490206SBarry Smith B->view = MatView_SeqBAIJ; 21892593348eSBarry Smith B->factor = 0; 21902593348eSBarry Smith B->lupivotthreshold = 1.0; 219190f02eecSBarry Smith B->mapping = 0; 21922593348eSBarry Smith b->row = 0; 21932593348eSBarry Smith b->col = 0; 21942593348eSBarry Smith b->reallocs = 0; 21952593348eSBarry Smith 219644cd7ae7SLois Curfman McInnes b->m = m; B->m = m; B->M = m; 219744cd7ae7SLois Curfman McInnes b->n = n; B->n = n; B->N = n; 2198b6490206SBarry Smith b->mbs = mbs; 2199f2501298SSatish Balay b->nbs = nbs; 2200b6490206SBarry Smith b->imax = (int *) PetscMalloc( (mbs+1)*sizeof(int) ); CHKPTRQ(b->imax); 22012593348eSBarry Smith if (nnz == PETSC_NULL) { 2202119a934aSSatish Balay if (nz == PETSC_DEFAULT) nz = 5; 22032593348eSBarry Smith else if (nz <= 0) nz = 1; 2204b6490206SBarry Smith for ( i=0; i<mbs; i++ ) b->imax[i] = nz; 2205b6490206SBarry Smith nz = nz*mbs; 22063a40ed3dSBarry Smith } else { 22072593348eSBarry Smith nz = 0; 2208b6490206SBarry Smith for ( i=0; i<mbs; i++ ) {b->imax[i] = nnz[i]; nz += nnz[i];} 22092593348eSBarry Smith } 22102593348eSBarry Smith 22112593348eSBarry Smith /* allocate the matrix space */ 22127e67e3f9SSatish Balay len = nz*sizeof(int) + nz*bs2*sizeof(Scalar) + (b->m+1)*sizeof(int); 22132593348eSBarry Smith b->a = (Scalar *) PetscMalloc( len ); CHKPTRQ(b->a); 22147e67e3f9SSatish Balay PetscMemzero(b->a,nz*bs2*sizeof(Scalar)); 22157e67e3f9SSatish Balay b->j = (int *) (b->a + nz*bs2); 22162593348eSBarry Smith PetscMemzero(b->j,nz*sizeof(int)); 22172593348eSBarry Smith b->i = b->j + nz; 22182593348eSBarry Smith b->singlemalloc = 1; 22192593348eSBarry Smith 2220de6a44a3SBarry Smith b->i[0] = 0; 2221b6490206SBarry Smith for (i=1; i<mbs+1; i++) { 22222593348eSBarry Smith b->i[i] = b->i[i-1] + b->imax[i-1]; 22232593348eSBarry Smith } 22242593348eSBarry Smith 2225b6490206SBarry Smith /* b->ilen will count nonzeros in each block row so far. */ 2226b6490206SBarry Smith b->ilen = (int *) PetscMalloc((mbs+1)*sizeof(int)); 2227f09e8eb9SSatish Balay PLogObjectMemory(B,len+2*(mbs+1)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_SeqBAIJ)); 2228b6490206SBarry Smith for ( i=0; i<mbs; i++ ) { b->ilen[i] = 0;} 22292593348eSBarry Smith 2230b6490206SBarry Smith b->bs = bs; 22319df24120SSatish Balay b->bs2 = bs2; 2232b6490206SBarry Smith b->mbs = mbs; 22332593348eSBarry Smith b->nz = 0; 223418e7b8e4SLois Curfman McInnes b->maxnz = nz*bs2; 22352593348eSBarry Smith b->sorted = 0; 22362593348eSBarry Smith b->roworiented = 1; 22372593348eSBarry Smith b->nonew = 0; 22382593348eSBarry Smith b->diag = 0; 22392593348eSBarry Smith b->solve_work = 0; 2240de6a44a3SBarry Smith b->mult_work = 0; 22412593348eSBarry Smith b->spptr = 0; 22424e220ebcSLois Curfman McInnes B->info.nz_unneeded = (double)b->maxnz; 22434e220ebcSLois Curfman McInnes 22442593348eSBarry Smith *A = B; 22452593348eSBarry Smith ierr = OptionsHasName(PETSC_NULL,"-help", &flg); CHKERRQ(ierr); 22462593348eSBarry Smith if (flg) {ierr = MatPrintHelp(B); CHKERRQ(ierr); } 22473a40ed3dSBarry Smith PetscFunctionReturn(0); 22482593348eSBarry Smith } 22492593348eSBarry Smith 22505615d1e5SSatish Balay #undef __FUNC__ 22515615d1e5SSatish Balay #define __FUNC__ "MatConvertSameType_SeqBAIJ" 2252b6490206SBarry Smith int MatConvertSameType_SeqBAIJ(Mat A,Mat *B,int cpvalues) 22532593348eSBarry Smith { 22542593348eSBarry Smith Mat C; 2255b6490206SBarry Smith Mat_SeqBAIJ *c,*a = (Mat_SeqBAIJ *) A->data; 22569df24120SSatish Balay int i,len, mbs = a->mbs,nz = a->nz,bs2 =a->bs2; 2257de6a44a3SBarry Smith 22583a40ed3dSBarry Smith PetscFunctionBegin; 2259a8c6a408SBarry Smith if (a->i[mbs] != nz) SETERRQ(PETSC_ERR_PLIB,0,"Corrupt matrix"); 22602593348eSBarry Smith 22612593348eSBarry Smith *B = 0; 2262d4bb536fSBarry Smith PetscHeaderCreate(C,_p_Mat,MAT_COOKIE,MATSEQBAIJ,A->comm,MatDestroy,MatView); 22632593348eSBarry Smith PLogObjectCreate(C); 2264b6490206SBarry Smith C->data = (void *) (c = PetscNew(Mat_SeqBAIJ)); CHKPTRQ(c); 22652593348eSBarry Smith PetscMemcpy(&C->ops,&A->ops,sizeof(struct _MatOps)); 2266b6490206SBarry Smith C->destroy = MatDestroy_SeqBAIJ; 2267b6490206SBarry Smith C->view = MatView_SeqBAIJ; 22682593348eSBarry Smith C->factor = A->factor; 22692593348eSBarry Smith c->row = 0; 22702593348eSBarry Smith c->col = 0; 22712593348eSBarry Smith C->assembled = PETSC_TRUE; 22722593348eSBarry Smith 227344cd7ae7SLois Curfman McInnes c->m = C->m = a->m; 227444cd7ae7SLois Curfman McInnes c->n = C->n = a->n; 227544cd7ae7SLois Curfman McInnes C->M = a->m; 227644cd7ae7SLois Curfman McInnes C->N = a->n; 227744cd7ae7SLois Curfman McInnes 2278b6490206SBarry Smith c->bs = a->bs; 22799df24120SSatish Balay c->bs2 = a->bs2; 2280b6490206SBarry Smith c->mbs = a->mbs; 2281b6490206SBarry Smith c->nbs = a->nbs; 22822593348eSBarry Smith 2283b6490206SBarry Smith c->imax = (int *) PetscMalloc((mbs+1)*sizeof(int)); CHKPTRQ(c->imax); 2284b6490206SBarry Smith c->ilen = (int *) PetscMalloc((mbs+1)*sizeof(int)); CHKPTRQ(c->ilen); 2285b6490206SBarry Smith for ( i=0; i<mbs; i++ ) { 22862593348eSBarry Smith c->imax[i] = a->imax[i]; 22872593348eSBarry Smith c->ilen[i] = a->ilen[i]; 22882593348eSBarry Smith } 22892593348eSBarry Smith 22902593348eSBarry Smith /* allocate the matrix space */ 22912593348eSBarry Smith c->singlemalloc = 1; 22927e67e3f9SSatish Balay len = (mbs+1)*sizeof(int) + nz*(bs2*sizeof(Scalar) + sizeof(int)); 22932593348eSBarry Smith c->a = (Scalar *) PetscMalloc( len ); CHKPTRQ(c->a); 22947e67e3f9SSatish Balay c->j = (int *) (c->a + nz*bs2); 2295de6a44a3SBarry Smith c->i = c->j + nz; 2296b6490206SBarry Smith PetscMemcpy(c->i,a->i,(mbs+1)*sizeof(int)); 2297b6490206SBarry Smith if (mbs > 0) { 2298de6a44a3SBarry Smith PetscMemcpy(c->j,a->j,nz*sizeof(int)); 22992593348eSBarry Smith if (cpvalues == COPY_VALUES) { 23007e67e3f9SSatish Balay PetscMemcpy(c->a,a->a,bs2*nz*sizeof(Scalar)); 23012593348eSBarry Smith } 23022593348eSBarry Smith } 23032593348eSBarry Smith 2304f09e8eb9SSatish Balay PLogObjectMemory(C,len+2*(mbs+1)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_SeqBAIJ)); 23052593348eSBarry Smith c->sorted = a->sorted; 23062593348eSBarry Smith c->roworiented = a->roworiented; 23072593348eSBarry Smith c->nonew = a->nonew; 23082593348eSBarry Smith 23092593348eSBarry Smith if (a->diag) { 2310b6490206SBarry Smith c->diag = (int *) PetscMalloc( (mbs+1)*sizeof(int) ); CHKPTRQ(c->diag); 2311b6490206SBarry Smith PLogObjectMemory(C,(mbs+1)*sizeof(int)); 2312b6490206SBarry Smith for ( i=0; i<mbs; i++ ) { 23132593348eSBarry Smith c->diag[i] = a->diag[i]; 23142593348eSBarry Smith } 23152593348eSBarry Smith } 23162593348eSBarry Smith else c->diag = 0; 23172593348eSBarry Smith c->nz = a->nz; 23182593348eSBarry Smith c->maxnz = a->maxnz; 23192593348eSBarry Smith c->solve_work = 0; 23202593348eSBarry Smith c->spptr = 0; /* Dangerous -I'm throwing away a->spptr */ 23217fc0212eSBarry Smith c->mult_work = 0; 23222593348eSBarry Smith *B = C; 23233a40ed3dSBarry Smith PetscFunctionReturn(0); 23242593348eSBarry Smith } 23252593348eSBarry Smith 23265615d1e5SSatish Balay #undef __FUNC__ 23275615d1e5SSatish Balay #define __FUNC__ "MatLoad_SeqBAIJ" 232819bcc07fSBarry Smith int MatLoad_SeqBAIJ(Viewer viewer,MatType type,Mat *A) 23292593348eSBarry Smith { 2330b6490206SBarry Smith Mat_SeqBAIJ *a; 23312593348eSBarry Smith Mat B; 2332de6a44a3SBarry Smith int i,nz,ierr,fd,header[4],size,*rowlengths=0,M,N,bs=1,flg; 2333b6490206SBarry Smith int *mask,mbs,*jj,j,rowcount,nzcount,k,*browlengths,maskcount; 233435aab85fSBarry Smith int kmax,jcount,block,idx,point,nzcountb,extra_rows; 2335a7c10996SSatish Balay int *masked, nmask,tmp,bs2,ishift; 2336b6490206SBarry Smith Scalar *aa; 233719bcc07fSBarry Smith MPI_Comm comm = ((PetscObject) viewer)->comm; 23382593348eSBarry Smith 23393a40ed3dSBarry Smith PetscFunctionBegin; 23401a6a6d98SBarry Smith ierr = OptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,&flg);CHKERRQ(ierr); 2341de6a44a3SBarry Smith bs2 = bs*bs; 2342b6490206SBarry Smith 23432593348eSBarry Smith MPI_Comm_size(comm,&size); 2344*cc0fae11SBarry Smith if (size > 1) SETERRQ(PETSC_ERR_ARG_WRONG,0,"view must have one processor"); 234590ace30eSBarry Smith ierr = ViewerBinaryGetDescriptor(viewer,&fd); CHKERRQ(ierr); 23460752156aSBarry Smith ierr = PetscBinaryRead(fd,header,4,PETSC_INT); CHKERRQ(ierr); 2347a8c6a408SBarry Smith if (header[0] != MAT_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"not Mat object"); 23482593348eSBarry Smith M = header[1]; N = header[2]; nz = header[3]; 23492593348eSBarry Smith 2350d64ed03dSBarry Smith if (header[3] < 0) { 2351a8c6a408SBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,1,"Matrix stored in special format, cannot load as SeqBAIJ"); 2352d64ed03dSBarry Smith } 2353d64ed03dSBarry Smith 2354a8c6a408SBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,0,"Can only do square matrices"); 235535aab85fSBarry Smith 235635aab85fSBarry Smith /* 235735aab85fSBarry Smith This code adds extra rows to make sure the number of rows is 235835aab85fSBarry Smith divisible by the blocksize 235935aab85fSBarry Smith */ 2360b6490206SBarry Smith mbs = M/bs; 236135aab85fSBarry Smith extra_rows = bs - M + bs*(mbs); 236235aab85fSBarry Smith if (extra_rows == bs) extra_rows = 0; 236335aab85fSBarry Smith else mbs++; 236435aab85fSBarry Smith if (extra_rows) { 2365537820f0SBarry Smith PLogInfo(0,"MatLoad_SeqBAIJ:Padding loaded matrix to match blocksize\n"); 236635aab85fSBarry Smith } 2367b6490206SBarry Smith 23682593348eSBarry Smith /* read in row lengths */ 236935aab85fSBarry Smith rowlengths = (int*) PetscMalloc((M+extra_rows)*sizeof(int));CHKPTRQ(rowlengths); 23700752156aSBarry Smith ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT); CHKERRQ(ierr); 237135aab85fSBarry Smith for ( i=0; i<extra_rows; i++ ) rowlengths[M+i] = 1; 23722593348eSBarry Smith 2373b6490206SBarry Smith /* read in column indices */ 237435aab85fSBarry Smith jj = (int*) PetscMalloc( (nz+extra_rows)*sizeof(int) ); CHKPTRQ(jj); 23750752156aSBarry Smith ierr = PetscBinaryRead(fd,jj,nz,PETSC_INT); CHKERRQ(ierr); 237635aab85fSBarry Smith for ( i=0; i<extra_rows; i++ ) jj[nz+i] = M+i; 2377b6490206SBarry Smith 2378b6490206SBarry Smith /* loop over row lengths determining block row lengths */ 2379b6490206SBarry Smith browlengths = (int *) PetscMalloc(mbs*sizeof(int));CHKPTRQ(browlengths); 2380b6490206SBarry Smith PetscMemzero(browlengths,mbs*sizeof(int)); 238135aab85fSBarry Smith mask = (int *) PetscMalloc( 2*mbs*sizeof(int) ); CHKPTRQ(mask); 238235aab85fSBarry Smith PetscMemzero(mask,mbs*sizeof(int)); 238335aab85fSBarry Smith masked = mask + mbs; 2384b6490206SBarry Smith rowcount = 0; nzcount = 0; 2385b6490206SBarry Smith for ( i=0; i<mbs; i++ ) { 238635aab85fSBarry Smith nmask = 0; 2387b6490206SBarry Smith for ( j=0; j<bs; j++ ) { 2388b6490206SBarry Smith kmax = rowlengths[rowcount]; 2389b6490206SBarry Smith for ( k=0; k<kmax; k++ ) { 239035aab85fSBarry Smith tmp = jj[nzcount++]/bs; 239135aab85fSBarry Smith if (!mask[tmp]) {masked[nmask++] = tmp; mask[tmp] = 1;} 2392b6490206SBarry Smith } 2393b6490206SBarry Smith rowcount++; 2394b6490206SBarry Smith } 239535aab85fSBarry Smith browlengths[i] += nmask; 239635aab85fSBarry Smith /* zero out the mask elements we set */ 239735aab85fSBarry Smith for ( j=0; j<nmask; j++ ) mask[masked[j]] = 0; 2398b6490206SBarry Smith } 2399b6490206SBarry Smith 24002593348eSBarry Smith /* create our matrix */ 24013eee16b0SBarry Smith ierr = MatCreateSeqBAIJ(comm,bs,M+extra_rows,N+extra_rows,0,browlengths,A);CHKERRQ(ierr); 24022593348eSBarry Smith B = *A; 2403b6490206SBarry Smith a = (Mat_SeqBAIJ *) B->data; 24042593348eSBarry Smith 24052593348eSBarry Smith /* set matrix "i" values */ 2406de6a44a3SBarry Smith a->i[0] = 0; 2407b6490206SBarry Smith for ( i=1; i<= mbs; i++ ) { 2408b6490206SBarry Smith a->i[i] = a->i[i-1] + browlengths[i-1]; 2409b6490206SBarry Smith a->ilen[i-1] = browlengths[i-1]; 24102593348eSBarry Smith } 2411b6490206SBarry Smith a->nz = 0; 2412b6490206SBarry Smith for ( i=0; i<mbs; i++ ) a->nz += browlengths[i]; 24132593348eSBarry Smith 2414b6490206SBarry Smith /* read in nonzero values */ 241535aab85fSBarry Smith aa = (Scalar *) PetscMalloc((nz+extra_rows)*sizeof(Scalar));CHKPTRQ(aa); 24160752156aSBarry Smith ierr = PetscBinaryRead(fd,aa,nz,PETSC_SCALAR); CHKERRQ(ierr); 241735aab85fSBarry Smith for ( i=0; i<extra_rows; i++ ) aa[nz+i] = 1.0; 2418b6490206SBarry Smith 2419b6490206SBarry Smith /* set "a" and "j" values into matrix */ 2420b6490206SBarry Smith nzcount = 0; jcount = 0; 2421b6490206SBarry Smith for ( i=0; i<mbs; i++ ) { 2422b6490206SBarry Smith nzcountb = nzcount; 242335aab85fSBarry Smith nmask = 0; 2424b6490206SBarry Smith for ( j=0; j<bs; j++ ) { 2425b6490206SBarry Smith kmax = rowlengths[i*bs+j]; 2426b6490206SBarry Smith for ( k=0; k<kmax; k++ ) { 242735aab85fSBarry Smith tmp = jj[nzcount++]/bs; 242835aab85fSBarry Smith if (!mask[tmp]) { masked[nmask++] = tmp; mask[tmp] = 1;} 2429b6490206SBarry Smith } 2430b6490206SBarry Smith rowcount++; 2431b6490206SBarry Smith } 2432de6a44a3SBarry Smith /* sort the masked values */ 243377c4ece6SBarry Smith PetscSortInt(nmask,masked); 2434de6a44a3SBarry Smith 2435b6490206SBarry Smith /* set "j" values into matrix */ 2436b6490206SBarry Smith maskcount = 1; 243735aab85fSBarry Smith for ( j=0; j<nmask; j++ ) { 243835aab85fSBarry Smith a->j[jcount++] = masked[j]; 2439de6a44a3SBarry Smith mask[masked[j]] = maskcount++; 2440b6490206SBarry Smith } 2441b6490206SBarry Smith /* set "a" values into matrix */ 2442de6a44a3SBarry Smith ishift = bs2*a->i[i]; 2443b6490206SBarry Smith for ( j=0; j<bs; j++ ) { 2444b6490206SBarry Smith kmax = rowlengths[i*bs+j]; 2445b6490206SBarry Smith for ( k=0; k<kmax; k++ ) { 2446de6a44a3SBarry Smith tmp = jj[nzcountb]/bs ; 2447de6a44a3SBarry Smith block = mask[tmp] - 1; 2448de6a44a3SBarry Smith point = jj[nzcountb] - bs*tmp; 2449de6a44a3SBarry Smith idx = ishift + bs2*block + j + bs*point; 2450b6490206SBarry Smith a->a[idx] = aa[nzcountb++]; 2451b6490206SBarry Smith } 2452b6490206SBarry Smith } 245335aab85fSBarry Smith /* zero out the mask elements we set */ 245435aab85fSBarry Smith for ( j=0; j<nmask; j++ ) mask[masked[j]] = 0; 2455b6490206SBarry Smith } 2456a8c6a408SBarry Smith if (jcount != a->nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"Bad binary matrix"); 2457b6490206SBarry Smith 2458b6490206SBarry Smith PetscFree(rowlengths); 2459b6490206SBarry Smith PetscFree(browlengths); 2460b6490206SBarry Smith PetscFree(aa); 2461b6490206SBarry Smith PetscFree(jj); 2462b6490206SBarry Smith PetscFree(mask); 2463b6490206SBarry Smith 2464b6490206SBarry Smith B->assembled = PETSC_TRUE; 2465de6a44a3SBarry Smith 24669c01be13SBarry Smith ierr = MatView_Private(B); CHKERRQ(ierr); 24673a40ed3dSBarry Smith PetscFunctionReturn(0); 24682593348eSBarry Smith } 24692593348eSBarry Smith 24702593348eSBarry Smith 24712593348eSBarry Smith 2472