xref: /petsc/src/mat/impls/baij/seq/baij.c (revision cf12db733d96eb19aec68f4bc970b9b4e51956bf)
1be1d678aSKris Buschelman #define PETSCMAT_DLL
2be1d678aSKris Buschelman 
32593348eSBarry Smith /*
4b6490206SBarry Smith     Defines the basic matrix operations for the BAIJ (compressed row)
52593348eSBarry Smith   matrix storage format.
62593348eSBarry Smith */
770f55243SBarry Smith #include "src/mat/impls/baij/seq/baij.h"
81a6a6d98SBarry Smith #include "src/inline/spops.h"
9325e03aeSBarry Smith #include "petscsys.h"                     /*I "petscmat.h" I*/
103b547af2SSatish Balay 
11b01c7715SBarry Smith #include "src/inline/ilu.h"
12b01c7715SBarry Smith 
13b01c7715SBarry Smith #undef __FUNCT__
1443516a2dSKris Buschelman #define __FUNCT__ "MatSeqBAIJInvertBlockDiagonal"
15bc08b0f1SBarry Smith /*@
1643516a2dSKris Buschelman   MatSeqBAIJInvertBlockDiagonal - Inverts the block diagonal entries.
1743516a2dSKris Buschelman 
1843516a2dSKris Buschelman   Collective on Mat
1943516a2dSKris Buschelman 
2043516a2dSKris Buschelman   Input Parameters:
2143516a2dSKris Buschelman . mat - the matrix
2243516a2dSKris Buschelman 
2343516a2dSKris Buschelman   Level: advanced
2443516a2dSKris Buschelman @*/
2546129b97SKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJInvertBlockDiagonal(Mat mat)
2643516a2dSKris Buschelman {
2743516a2dSKris Buschelman   PetscErrorCode ierr,(*f)(Mat);
2843516a2dSKris Buschelman 
2943516a2dSKris Buschelman   PetscFunctionBegin;
3043516a2dSKris Buschelman   PetscValidHeaderSpecific(mat,MAT_COOKIE,1);
3143516a2dSKris Buschelman   if (!mat->assembled) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for unassembled matrix");
3243516a2dSKris Buschelman   if (mat->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
3343516a2dSKris Buschelman 
3443516a2dSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)mat,"MatSeqBAIJInvertBlockDiagonal_C",(void (**)(void))&f);CHKERRQ(ierr);
3543516a2dSKris Buschelman   if (f) {
3643516a2dSKris Buschelman     ierr = (*f)(mat);CHKERRQ(ierr);
3743516a2dSKris Buschelman   } else {
3843516a2dSKris Buschelman     SETERRQ(PETSC_ERR_SUP,"Currently only implemented for SeqBAIJ.");
3943516a2dSKris Buschelman   }
4043516a2dSKris Buschelman   PetscFunctionReturn(0);
4143516a2dSKris Buschelman }
4243516a2dSKris Buschelman 
4343516a2dSKris Buschelman EXTERN_C_BEGIN
4443516a2dSKris Buschelman #undef __FUNCT__
45b01c7715SBarry Smith #define __FUNCT__ "MatInvertBlockDiagonal_SeqBAIJ"
4646129b97SKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatInvertBlockDiagonal_SeqBAIJ(Mat A)
47b01c7715SBarry Smith {
48b01c7715SBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*) A->data;
496849ba73SBarry Smith   PetscErrorCode ierr;
50899cda47SBarry Smith   PetscInt       *diag_offset,i,bs = A->rmap.bs,mbs = a->mbs;
5197e5c40aSBarry Smith   MatScalar      *v = a->a,*odiag,*diag,*mdiag;
5262bba022SBarry Smith   PetscReal      shift = 0.0;
53b01c7715SBarry Smith 
54b01c7715SBarry Smith   PetscFunctionBegin;
55b01c7715SBarry Smith   if (a->idiagvalid) PetscFunctionReturn(0);
56b01c7715SBarry Smith   ierr = MatMarkDiagonal_SeqBAIJ(A);CHKERRQ(ierr);
57b01c7715SBarry Smith   diag_offset = a->diag;
58b01c7715SBarry Smith   if (!a->idiag) {
59b01c7715SBarry Smith     ierr = PetscMalloc(2*bs*bs*mbs*sizeof(PetscScalar),&a->idiag);CHKERRQ(ierr);
60b01c7715SBarry Smith   }
61b01c7715SBarry Smith   diag  = a->idiag;
62b01c7715SBarry Smith   mdiag = a->idiag+bs*bs*mbs;
63b01c7715SBarry Smith   /* factor and invert each block */
64521d7252SBarry Smith   switch (bs){
65b01c7715SBarry Smith     case 2:
66b01c7715SBarry Smith       for (i=0; i<mbs; i++) {
67b01c7715SBarry Smith         odiag   = v + 4*diag_offset[i];
68b01c7715SBarry Smith         diag[0]  = odiag[0]; diag[1] = odiag[1]; diag[2] = odiag[2]; diag[3] = odiag[3];
69b01c7715SBarry Smith 	mdiag[0] = odiag[0]; mdiag[1] = odiag[1]; mdiag[2] = odiag[2]; mdiag[3] = odiag[3];
7062bba022SBarry Smith 	ierr     = Kernel_A_gets_inverse_A_2(diag,shift);CHKERRQ(ierr);
71b01c7715SBarry Smith 	diag    += 4;
72b01c7715SBarry Smith 	mdiag   += 4;
73b01c7715SBarry Smith       }
74b01c7715SBarry Smith       break;
75b01c7715SBarry Smith     case 3:
76b01c7715SBarry Smith       for (i=0; i<mbs; i++) {
77b01c7715SBarry Smith         odiag    = v + 9*diag_offset[i];
78b01c7715SBarry Smith         diag[0]  = odiag[0]; diag[1] = odiag[1]; diag[2] = odiag[2]; diag[3] = odiag[3];
79b01c7715SBarry Smith         diag[4]  = odiag[4]; diag[5] = odiag[5]; diag[6] = odiag[6]; diag[7] = odiag[7];
80b01c7715SBarry Smith         diag[8]  = odiag[8];
81b01c7715SBarry Smith         mdiag[0] = odiag[0]; mdiag[1] = odiag[1]; mdiag[2] = odiag[2]; mdiag[3] = odiag[3];
82b01c7715SBarry Smith         mdiag[4] = odiag[4]; mdiag[5] = odiag[5]; mdiag[6] = odiag[6]; mdiag[7] = odiag[7];
83b01c7715SBarry Smith         mdiag[8] = odiag[8];
8462bba022SBarry Smith 	ierr     = Kernel_A_gets_inverse_A_3(diag,shift);CHKERRQ(ierr);
85b01c7715SBarry Smith 	diag    += 9;
86b01c7715SBarry Smith 	mdiag   += 9;
87b01c7715SBarry Smith       }
88b01c7715SBarry Smith       break;
89b01c7715SBarry Smith     case 4:
90b01c7715SBarry Smith       for (i=0; i<mbs; i++) {
91b01c7715SBarry Smith         odiag  = v + 16*diag_offset[i];
92b01c7715SBarry Smith         ierr   = PetscMemcpy(diag,odiag,16*sizeof(PetscScalar));CHKERRQ(ierr);
93b01c7715SBarry Smith         ierr   = PetscMemcpy(mdiag,odiag,16*sizeof(PetscScalar));CHKERRQ(ierr);
9462bba022SBarry Smith 	ierr   = Kernel_A_gets_inverse_A_4(diag,shift);CHKERRQ(ierr);
95b01c7715SBarry Smith 	diag  += 16;
96b01c7715SBarry Smith 	mdiag += 16;
97b01c7715SBarry Smith       }
98b01c7715SBarry Smith       break;
99b01c7715SBarry Smith     case 5:
100b01c7715SBarry Smith       for (i=0; i<mbs; i++) {
101b01c7715SBarry Smith         odiag = v + 25*diag_offset[i];
102b01c7715SBarry Smith         ierr   = PetscMemcpy(diag,odiag,25*sizeof(PetscScalar));CHKERRQ(ierr);
103b01c7715SBarry Smith         ierr   = PetscMemcpy(mdiag,odiag,25*sizeof(PetscScalar));CHKERRQ(ierr);
10462bba022SBarry Smith 	ierr   = Kernel_A_gets_inverse_A_5(diag,shift);CHKERRQ(ierr);
105b01c7715SBarry Smith 	diag  += 25;
106b01c7715SBarry Smith 	mdiag += 25;
107b01c7715SBarry Smith       }
108b01c7715SBarry Smith       break;
109b01c7715SBarry Smith     default:
110521d7252SBarry Smith       SETERRQ1(PETSC_ERR_SUP,"not supported for block size %D",bs);
111b01c7715SBarry Smith   }
112b01c7715SBarry Smith   a->idiagvalid = PETSC_TRUE;
113b01c7715SBarry Smith   PetscFunctionReturn(0);
114b01c7715SBarry Smith }
11543516a2dSKris Buschelman EXTERN_C_END
116b01c7715SBarry Smith 
117b01c7715SBarry Smith #undef __FUNCT__
1186d3beeddSMatthew Knepley #define __FUNCT__ "MatPBRelax_SeqBAIJ_1"
1196d3beeddSMatthew Knepley PetscErrorCode MatPBRelax_SeqBAIJ_1(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
1206d3beeddSMatthew Knepley {
1216d3beeddSMatthew Knepley   Mat_SeqBAIJ        *a = (Mat_SeqBAIJ*)A->data;
1226d3beeddSMatthew Knepley   PetscScalar        *x,x1,s1;
123dd6ea824SBarry Smith   const PetscScalar  *b;
124dd6ea824SBarry Smith   const MatScalar    *aa = a->a, *idiag,*mdiag,*v;
1256d3beeddSMatthew Knepley   PetscErrorCode     ierr;
1266d3beeddSMatthew Knepley   PetscInt           m = a->mbs,i,i2,nz,idx;
1276d3beeddSMatthew Knepley   const PetscInt     *diag,*ai = a->i,*aj = a->j,*vi;
1286d3beeddSMatthew Knepley 
1296d3beeddSMatthew Knepley   PetscFunctionBegin;
1306d3beeddSMatthew Knepley   if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat");
1316d3beeddSMatthew Knepley   its = its*lits;
1326d3beeddSMatthew Knepley   if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
1336d3beeddSMatthew Knepley   if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift");
1346d3beeddSMatthew Knepley   if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor");
1356d3beeddSMatthew Knepley   if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts");
1366d3beeddSMatthew Knepley   if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations");
1376d3beeddSMatthew Knepley 
1386d3beeddSMatthew Knepley   if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);}
1396d3beeddSMatthew Knepley 
1406d3beeddSMatthew Knepley   diag  = a->diag;
1416d3beeddSMatthew Knepley   idiag = a->idiag;
1426d3beeddSMatthew Knepley   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
1436d3beeddSMatthew Knepley   ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
1446d3beeddSMatthew Knepley 
1456d3beeddSMatthew Knepley   if (flag & SOR_ZERO_INITIAL_GUESS) {
1466d3beeddSMatthew Knepley     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){
1476d3beeddSMatthew Knepley       x[0] = b[0]*idiag[0];
1486d3beeddSMatthew Knepley       i2     = 1;
1496d3beeddSMatthew Knepley       idiag += 1;
1506d3beeddSMatthew Knepley       for (i=1; i<m; i++) {
1516d3beeddSMatthew Knepley         v     = aa + ai[i];
1526d3beeddSMatthew Knepley         vi    = aj + ai[i];
1536d3beeddSMatthew Knepley         nz    = diag[i] - ai[i];
1546d3beeddSMatthew Knepley         s1    = b[i2];
1556d3beeddSMatthew Knepley         while (nz--) {
1566d3beeddSMatthew Knepley           idx  = (*vi++);
1576d3beeddSMatthew Knepley           x1   = x[idx];
1586d3beeddSMatthew Knepley           s1  -= v[0]*x1;
1596d3beeddSMatthew Knepley           v   += 1;
1606d3beeddSMatthew Knepley         }
1616d3beeddSMatthew Knepley         x[i2]   = idiag[0]*s1;
1626d3beeddSMatthew Knepley         idiag   += 1;
1636d3beeddSMatthew Knepley         i2      += 1;
1646d3beeddSMatthew Knepley       }
1656d3beeddSMatthew Knepley       /* for logging purposes assume number of nonzero in lower half is 1/2 of total */
1666d3beeddSMatthew Knepley       ierr = PetscLogFlops(a->nz);CHKERRQ(ierr);
1676d3beeddSMatthew Knepley     }
1686d3beeddSMatthew Knepley     if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) &&
1696d3beeddSMatthew Knepley         (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) {
1706d3beeddSMatthew Knepley       i2    = 0;
1716d3beeddSMatthew Knepley       mdiag = a->idiag+a->mbs;
1726d3beeddSMatthew Knepley       for (i=0; i<m; i++) {
1736d3beeddSMatthew Knepley         x1      = x[i2];
1746d3beeddSMatthew Knepley         x[i2]   = mdiag[0]*x1;
1756d3beeddSMatthew Knepley         mdiag  += 1;
1766d3beeddSMatthew Knepley         i2     += 1;
1776d3beeddSMatthew Knepley       }
1786d3beeddSMatthew Knepley       ierr = PetscLogFlops(m);CHKERRQ(ierr);
1796d3beeddSMatthew Knepley     } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
1806d3beeddSMatthew Knepley       ierr = PetscMemcpy(x,b,A->rmap.N*sizeof(PetscScalar));CHKERRQ(ierr);
1816d3beeddSMatthew Knepley     }
1826d3beeddSMatthew Knepley     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){
1836d3beeddSMatthew Knepley       idiag   = a->idiag+a->mbs - 1;
1846d3beeddSMatthew Knepley       i2      = m - 1;
1856d3beeddSMatthew Knepley       x1      = x[i2];
1866d3beeddSMatthew Knepley       x[i2]   = idiag[0]*x1;
1876d3beeddSMatthew Knepley       idiag -= 1;
1886d3beeddSMatthew Knepley       i2    -= 1;
1896d3beeddSMatthew Knepley       for (i=m-2; i>=0; i--) {
1906d3beeddSMatthew Knepley         v     = aa + (diag[i]+1);
1916d3beeddSMatthew Knepley         vi    = aj + diag[i] + 1;
1926d3beeddSMatthew Knepley         nz    = ai[i+1] - diag[i] - 1;
1936d3beeddSMatthew Knepley         s1    = x[i2];
1946d3beeddSMatthew Knepley         while (nz--) {
1956d3beeddSMatthew Knepley           idx  = (*vi++);
1966d3beeddSMatthew Knepley           x1   = x[idx];
1976d3beeddSMatthew Knepley           s1  -= v[0]*x1;
1986d3beeddSMatthew Knepley           v   += 1;
1996d3beeddSMatthew Knepley         }
2006d3beeddSMatthew Knepley         x[i2]   = idiag[0]*s1;
2016d3beeddSMatthew Knepley         idiag   -= 2;
2026d3beeddSMatthew Knepley         i2      -= 1;
2036d3beeddSMatthew Knepley       }
2046d3beeddSMatthew Knepley       ierr = PetscLogFlops(a->nz);CHKERRQ(ierr);
2056d3beeddSMatthew Knepley     }
2066d3beeddSMatthew Knepley   } else {
2076d3beeddSMatthew Knepley     SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess");
2086d3beeddSMatthew Knepley   }
2096d3beeddSMatthew Knepley   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2106d3beeddSMatthew Knepley   ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
2116d3beeddSMatthew Knepley   PetscFunctionReturn(0);
2126d3beeddSMatthew Knepley }
2136d3beeddSMatthew Knepley 
2146d3beeddSMatthew Knepley #undef __FUNCT__
215b01c7715SBarry Smith #define __FUNCT__ "MatPBRelax_SeqBAIJ_2"
216c1ac3661SBarry Smith PetscErrorCode MatPBRelax_SeqBAIJ_2(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
217b01c7715SBarry Smith {
218b01c7715SBarry Smith   Mat_SeqBAIJ        *a = (Mat_SeqBAIJ*)A->data;
219b01c7715SBarry Smith   PetscScalar        *x,x1,x2,s1,s2;
220dd6ea824SBarry Smith   const PetscScalar  *b;
221dd6ea824SBarry Smith   const MatScalar    *v,*aa = a->a, *idiag,*mdiag;
222dfbe8321SBarry Smith   PetscErrorCode     ierr;
223c1ac3661SBarry Smith   PetscInt           m = a->mbs,i,i2,nz,idx;
224c1ac3661SBarry Smith   const PetscInt     *diag,*ai = a->i,*aj = a->j,*vi;
225b01c7715SBarry Smith 
226b01c7715SBarry Smith   PetscFunctionBegin;
22751f519a2SBarry Smith   if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat");
228b01c7715SBarry Smith   its = its*lits;
22977431f27SBarry Smith   if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
230b01c7715SBarry Smith   if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift");
231b01c7715SBarry Smith   if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor");
23271f1c65dSBarry Smith   if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts");
233b01c7715SBarry Smith   if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations");
234b01c7715SBarry Smith 
235b01c7715SBarry Smith   if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);}
236b01c7715SBarry Smith 
237b01c7715SBarry Smith   diag  = a->diag;
238b01c7715SBarry Smith   idiag = a->idiag;
2391ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2401ebc52fbSHong Zhang   ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
241b01c7715SBarry Smith 
242b01c7715SBarry Smith   if (flag & SOR_ZERO_INITIAL_GUESS) {
243b01c7715SBarry Smith     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){
244b01c7715SBarry Smith       x[0] = b[0]*idiag[0] + b[1]*idiag[2];
245b01c7715SBarry Smith       x[1] = b[0]*idiag[1] + b[1]*idiag[3];
246b01c7715SBarry Smith       i2     = 2;
247b01c7715SBarry Smith       idiag += 4;
248b01c7715SBarry Smith       for (i=1; i<m; i++) {
249b01c7715SBarry Smith 	v     = aa + 4*ai[i];
250b01c7715SBarry Smith 	vi    = aj + ai[i];
251b01c7715SBarry Smith 	nz    = diag[i] - ai[i];
252b01c7715SBarry Smith 	s1    = b[i2]; s2 = b[i2+1];
253b01c7715SBarry Smith 	while (nz--) {
254b01c7715SBarry Smith 	  idx  = 2*(*vi++);
255b01c7715SBarry Smith 	  x1   = x[idx]; x2 = x[1+idx];
256b01c7715SBarry Smith 	  s1  -= v[0]*x1 + v[2]*x2;
257b01c7715SBarry Smith 	  s2  -= v[1]*x1 + v[3]*x2;
258b01c7715SBarry Smith 	  v   += 4;
259b01c7715SBarry Smith 	}
260b01c7715SBarry Smith 	x[i2]   = idiag[0]*s1 + idiag[2]*s2;
261b01c7715SBarry Smith 	x[i2+1] = idiag[1]*s1 + idiag[3]*s2;
262b01c7715SBarry Smith         idiag   += 4;
263b01c7715SBarry Smith         i2      += 2;
264b01c7715SBarry Smith       }
265b01c7715SBarry Smith       /* for logging purposes assume number of nonzero in lower half is 1/2 of total */
266efee365bSSatish Balay       ierr = PetscLogFlops(4*(a->nz));CHKERRQ(ierr);
267b01c7715SBarry Smith     }
268b01c7715SBarry Smith     if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) &&
269b01c7715SBarry Smith         (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) {
270b01c7715SBarry Smith       i2    = 0;
271b01c7715SBarry Smith       mdiag = a->idiag+4*a->mbs;
272b01c7715SBarry Smith       for (i=0; i<m; i++) {
273b01c7715SBarry Smith         x1      = x[i2]; x2 = x[i2+1];
274b01c7715SBarry Smith         x[i2]   = mdiag[0]*x1 + mdiag[2]*x2;
275b01c7715SBarry Smith         x[i2+1] = mdiag[1]*x1 + mdiag[3]*x2;
276b01c7715SBarry Smith         mdiag  += 4;
277b01c7715SBarry Smith         i2     += 2;
278b01c7715SBarry Smith       }
279efee365bSSatish Balay       ierr = PetscLogFlops(6*m);CHKERRQ(ierr);
280b01c7715SBarry Smith     } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
281899cda47SBarry Smith       ierr = PetscMemcpy(x,b,A->rmap.N*sizeof(PetscScalar));CHKERRQ(ierr);
282b01c7715SBarry Smith     }
283b01c7715SBarry Smith     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){
284b01c7715SBarry Smith       idiag   = a->idiag+4*a->mbs - 4;
285b01c7715SBarry Smith       i2      = 2*m - 2;
286b01c7715SBarry Smith       x1      = x[i2]; x2 = x[i2+1];
287b01c7715SBarry Smith       x[i2]   = idiag[0]*x1 + idiag[2]*x2;
288b01c7715SBarry Smith       x[i2+1] = idiag[1]*x1 + idiag[3]*x2;
289b01c7715SBarry Smith       idiag -= 4;
290b01c7715SBarry Smith       i2    -= 2;
291b01c7715SBarry Smith       for (i=m-2; i>=0; i--) {
292b01c7715SBarry Smith 	v     = aa + 4*(diag[i]+1);
293b01c7715SBarry Smith 	vi    = aj + diag[i] + 1;
294b01c7715SBarry Smith 	nz    = ai[i+1] - diag[i] - 1;
295b01c7715SBarry Smith 	s1    = x[i2]; s2 = x[i2+1];
296b01c7715SBarry Smith 	while (nz--) {
297b01c7715SBarry Smith 	  idx  = 2*(*vi++);
298b01c7715SBarry Smith 	  x1   = x[idx]; x2 = x[1+idx];
299b01c7715SBarry Smith 	  s1  -= v[0]*x1 + v[2]*x2;
300b01c7715SBarry Smith 	  s2  -= v[1]*x1 + v[3]*x2;
301b01c7715SBarry Smith 	  v   += 4;
302b01c7715SBarry Smith 	}
303b01c7715SBarry Smith 	x[i2]   = idiag[0]*s1 + idiag[2]*s2;
304b01c7715SBarry Smith 	x[i2+1] = idiag[1]*s1 + idiag[3]*s2;
305b01c7715SBarry Smith         idiag   -= 4;
306b01c7715SBarry Smith         i2      -= 2;
307b01c7715SBarry Smith       }
308efee365bSSatish Balay       ierr = PetscLogFlops(4*(a->nz));CHKERRQ(ierr);
309b01c7715SBarry Smith     }
310b01c7715SBarry Smith   } else {
311634064b4SBarry Smith     SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess");
312b01c7715SBarry Smith   }
3131ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
3141ebc52fbSHong Zhang   ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
315b01c7715SBarry Smith   PetscFunctionReturn(0);
316b01c7715SBarry Smith }
317b01c7715SBarry Smith 
318b01c7715SBarry Smith #undef __FUNCT__
319b01c7715SBarry Smith #define __FUNCT__ "MatPBRelax_SeqBAIJ_3"
320c1ac3661SBarry Smith PetscErrorCode MatPBRelax_SeqBAIJ_3(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
321b01c7715SBarry Smith {
322b01c7715SBarry Smith   Mat_SeqBAIJ        *a = (Mat_SeqBAIJ*)A->data;
323b01c7715SBarry Smith   PetscScalar        *x,x1,x2,x3,s1,s2,s3;
324dd6ea824SBarry Smith   const MatScalar    *v,*aa = a->a, *idiag,*mdiag;
325dd6ea824SBarry Smith   const PetscScalar  *b;
326dfbe8321SBarry Smith   PetscErrorCode     ierr;
327c1ac3661SBarry Smith   PetscInt           m = a->mbs,i,i2,nz,idx;
328c1ac3661SBarry Smith   const PetscInt     *diag,*ai = a->i,*aj = a->j,*vi;
329b01c7715SBarry Smith 
330b01c7715SBarry Smith   PetscFunctionBegin;
331b01c7715SBarry Smith   its = its*lits;
33271f1c65dSBarry Smith   if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat");
33377431f27SBarry Smith   if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
334b01c7715SBarry Smith   if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift");
335b01c7715SBarry Smith   if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor");
33671f1c65dSBarry Smith   if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts");
337b01c7715SBarry Smith   if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations");
338b01c7715SBarry Smith 
339b01c7715SBarry Smith   if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);}
340b01c7715SBarry Smith 
341b01c7715SBarry Smith   diag  = a->diag;
342b01c7715SBarry Smith   idiag = a->idiag;
3431ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
3441ebc52fbSHong Zhang   ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
345b01c7715SBarry Smith 
346b01c7715SBarry Smith   if (flag & SOR_ZERO_INITIAL_GUESS) {
347b01c7715SBarry Smith     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){
348b01c7715SBarry Smith       x[0] = b[0]*idiag[0] + b[1]*idiag[3] + b[2]*idiag[6];
349b01c7715SBarry Smith       x[1] = b[0]*idiag[1] + b[1]*idiag[4] + b[2]*idiag[7];
350b01c7715SBarry Smith       x[2] = b[0]*idiag[2] + b[1]*idiag[5] + b[2]*idiag[8];
351b01c7715SBarry Smith       i2     = 3;
352b01c7715SBarry Smith       idiag += 9;
353b01c7715SBarry Smith       for (i=1; i<m; i++) {
354b01c7715SBarry Smith         v     = aa + 9*ai[i];
355b01c7715SBarry Smith         vi    = aj + ai[i];
356b01c7715SBarry Smith         nz    = diag[i] - ai[i];
357b01c7715SBarry Smith         s1    = b[i2]; s2 = b[i2+1]; s3 = b[i2+2];
358b01c7715SBarry Smith         while (nz--) {
359b01c7715SBarry Smith           idx  = 3*(*vi++);
360b01c7715SBarry Smith           x1   = x[idx]; x2 = x[1+idx];x3 = x[2+idx];
361b01c7715SBarry Smith           s1  -= v[0]*x1 + v[3]*x2 + v[6]*x3;
362b01c7715SBarry Smith           s2  -= v[1]*x1 + v[4]*x2 + v[7]*x3;
363b01c7715SBarry Smith           s3  -= v[2]*x1 + v[5]*x2 + v[8]*x3;
364b01c7715SBarry Smith           v   += 9;
365b01c7715SBarry Smith         }
366b01c7715SBarry Smith         x[i2]   = idiag[0]*s1 + idiag[3]*s2 + idiag[6]*s3;
367b01c7715SBarry Smith         x[i2+1] = idiag[1]*s1 + idiag[4]*s2 + idiag[7]*s3;
368b01c7715SBarry Smith         x[i2+2] = idiag[2]*s1 + idiag[5]*s2 + idiag[8]*s3;
369b01c7715SBarry Smith         idiag   += 9;
370b01c7715SBarry Smith         i2      += 3;
371b01c7715SBarry Smith       }
372b01c7715SBarry Smith       /* for logging purposes assume number of nonzero in lower half is 1/2 of total */
373efee365bSSatish Balay       ierr = PetscLogFlops(9*(a->nz));CHKERRQ(ierr);
374b01c7715SBarry Smith     }
375b01c7715SBarry Smith     if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) &&
376b01c7715SBarry Smith         (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) {
377b01c7715SBarry Smith       i2    = 0;
378b01c7715SBarry Smith       mdiag = a->idiag+9*a->mbs;
379b01c7715SBarry Smith       for (i=0; i<m; i++) {
380b01c7715SBarry Smith         x1      = x[i2]; x2 = x[i2+1]; x3 = x[i2+2];
381b01c7715SBarry Smith         x[i2]   = mdiag[0]*x1 + mdiag[3]*x2 + mdiag[6]*x3;
382b01c7715SBarry Smith         x[i2+1] = mdiag[1]*x1 + mdiag[4]*x2 + mdiag[7]*x3;
383b01c7715SBarry Smith         x[i2+2] = mdiag[2]*x1 + mdiag[5]*x2 + mdiag[8]*x3;
384b01c7715SBarry Smith         mdiag  += 9;
385b01c7715SBarry Smith         i2     += 3;
386b01c7715SBarry Smith       }
387efee365bSSatish Balay       ierr = PetscLogFlops(15*m);CHKERRQ(ierr);
388b01c7715SBarry Smith     } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
389899cda47SBarry Smith       ierr = PetscMemcpy(x,b,A->rmap.N*sizeof(PetscScalar));CHKERRQ(ierr);
390b01c7715SBarry Smith     }
391b01c7715SBarry Smith     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){
392b01c7715SBarry Smith       idiag   = a->idiag+9*a->mbs - 9;
393b01c7715SBarry Smith       i2      = 3*m - 3;
394b01c7715SBarry Smith       x1      = x[i2]; x2 = x[i2+1]; x3 = x[i2+2];
395b01c7715SBarry Smith       x[i2]   = idiag[0]*x1 + idiag[3]*x2 + idiag[6]*x3;
396b01c7715SBarry Smith       x[i2+1] = idiag[1]*x1 + idiag[4]*x2 + idiag[7]*x3;
397b01c7715SBarry Smith       x[i2+2] = idiag[2]*x1 + idiag[5]*x2 + idiag[8]*x3;
398b01c7715SBarry Smith       idiag -= 9;
399b01c7715SBarry Smith       i2    -= 3;
400b01c7715SBarry Smith       for (i=m-2; i>=0; i--) {
401b01c7715SBarry Smith         v     = aa + 9*(diag[i]+1);
402b01c7715SBarry Smith         vi    = aj + diag[i] + 1;
403b01c7715SBarry Smith         nz    = ai[i+1] - diag[i] - 1;
404b01c7715SBarry Smith         s1    = x[i2]; s2 = x[i2+1]; s3 = x[i2+2];
405b01c7715SBarry Smith         while (nz--) {
406b01c7715SBarry Smith           idx  = 3*(*vi++);
407b01c7715SBarry Smith           x1   = x[idx]; x2 = x[1+idx]; x3 = x[2+idx];
408b01c7715SBarry Smith           s1  -= v[0]*x1 + v[3]*x2 + v[6]*x3;
409b01c7715SBarry Smith           s2  -= v[1]*x1 + v[4]*x2 + v[7]*x3;
410b01c7715SBarry Smith           s3  -= v[2]*x1 + v[5]*x2 + v[8]*x3;
411b01c7715SBarry Smith           v   += 9;
412b01c7715SBarry Smith         }
413b01c7715SBarry Smith         x[i2]   = idiag[0]*s1 + idiag[3]*s2 + idiag[6]*s3;
414b01c7715SBarry Smith         x[i2+1] = idiag[1]*s1 + idiag[4]*s2 + idiag[7]*s3;
415b01c7715SBarry Smith         x[i2+2] = idiag[2]*s1 + idiag[5]*s2 + idiag[8]*s3;
416b01c7715SBarry Smith         idiag   -= 9;
417b01c7715SBarry Smith         i2      -= 3;
418b01c7715SBarry Smith       }
419efee365bSSatish Balay       ierr = PetscLogFlops(9*(a->nz));CHKERRQ(ierr);
420b01c7715SBarry Smith     }
421b01c7715SBarry Smith   } else {
422634064b4SBarry Smith     SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess");
423b01c7715SBarry Smith   }
4241ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
4251ebc52fbSHong Zhang   ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
426b01c7715SBarry Smith   PetscFunctionReturn(0);
427b01c7715SBarry Smith }
428b01c7715SBarry Smith 
429b01c7715SBarry Smith #undef __FUNCT__
430b01c7715SBarry Smith #define __FUNCT__ "MatPBRelax_SeqBAIJ_4"
431c1ac3661SBarry Smith PetscErrorCode MatPBRelax_SeqBAIJ_4(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
432b01c7715SBarry Smith {
433b01c7715SBarry Smith   Mat_SeqBAIJ        *a = (Mat_SeqBAIJ*)A->data;
434b01c7715SBarry Smith   PetscScalar        *x,x1,x2,x3,x4,s1,s2,s3,s4;
435dd6ea824SBarry Smith   const MatScalar    *v,*aa = a->a, *idiag,*mdiag;
436dd6ea824SBarry Smith   const PetscScalar  *b;
437dfbe8321SBarry Smith   PetscErrorCode     ierr;
438c1ac3661SBarry Smith   PetscInt           m = a->mbs,i,i2,nz,idx;
439c1ac3661SBarry Smith   const PetscInt     *diag,*ai = a->i,*aj = a->j,*vi;
440b01c7715SBarry Smith 
441b01c7715SBarry Smith   PetscFunctionBegin;
44271f1c65dSBarry Smith   if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat");
443b01c7715SBarry Smith   its = its*lits;
44477431f27SBarry Smith   if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
445b01c7715SBarry Smith   if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift");
446b01c7715SBarry Smith   if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor");
44771f1c65dSBarry Smith   if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts");
448b01c7715SBarry Smith   if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations");
449b01c7715SBarry Smith 
450b01c7715SBarry Smith   if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);}
451b01c7715SBarry Smith 
452b01c7715SBarry Smith   diag  = a->diag;
453b01c7715SBarry Smith   idiag = a->idiag;
4541ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
4551ebc52fbSHong Zhang   ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
456b01c7715SBarry Smith 
457b01c7715SBarry Smith   if (flag & SOR_ZERO_INITIAL_GUESS) {
458b01c7715SBarry Smith     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){
459b01c7715SBarry Smith       x[0] = b[0]*idiag[0] + b[1]*idiag[4] + b[2]*idiag[8]  + b[3]*idiag[12];
460b01c7715SBarry Smith       x[1] = b[0]*idiag[1] + b[1]*idiag[5] + b[2]*idiag[9]  + b[3]*idiag[13];
461b01c7715SBarry Smith       x[2] = b[0]*idiag[2] + b[1]*idiag[6] + b[2]*idiag[10] + b[3]*idiag[14];
462b01c7715SBarry Smith       x[3] = b[0]*idiag[3] + b[1]*idiag[7] + b[2]*idiag[11] + b[3]*idiag[15];
463b01c7715SBarry Smith       i2     = 4;
464b01c7715SBarry Smith       idiag += 16;
465b01c7715SBarry Smith       for (i=1; i<m; i++) {
466b01c7715SBarry Smith 	v     = aa + 16*ai[i];
467b01c7715SBarry Smith 	vi    = aj + ai[i];
468b01c7715SBarry Smith 	nz    = diag[i] - ai[i];
469b01c7715SBarry Smith 	s1    = b[i2]; s2 = b[i2+1]; s3 = b[i2+2]; s4 = b[i2+3];
470b01c7715SBarry Smith 	while (nz--) {
471b01c7715SBarry Smith 	  idx  = 4*(*vi++);
472b01c7715SBarry Smith 	  x1   = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx];
473b01c7715SBarry Smith 	  s1  -= v[0]*x1 + v[4]*x2 + v[8]*x3  + v[12]*x4;
474b01c7715SBarry Smith 	  s2  -= v[1]*x1 + v[5]*x2 + v[9]*x3  + v[13]*x4;
475b01c7715SBarry Smith 	  s3  -= v[2]*x1 + v[6]*x2 + v[10]*x3 + v[14]*x4;
476b01c7715SBarry Smith 	  s4  -= v[3]*x1 + v[7]*x2 + v[11]*x3 + v[15]*x4;
477b01c7715SBarry Smith 	  v   += 16;
478b01c7715SBarry Smith 	}
479b01c7715SBarry Smith 	x[i2]   = idiag[0]*s1 + idiag[4]*s2 + idiag[8]*s3  + idiag[12]*s4;
480b01c7715SBarry Smith 	x[i2+1] = idiag[1]*s1 + idiag[5]*s2 + idiag[9]*s3  + idiag[13]*s4;
481b01c7715SBarry Smith 	x[i2+2] = idiag[2]*s1 + idiag[6]*s2 + idiag[10]*s3 + idiag[14]*s4;
482b01c7715SBarry Smith 	x[i2+3] = idiag[3]*s1 + idiag[7]*s2 + idiag[11]*s3 + idiag[15]*s4;
483b01c7715SBarry Smith         idiag   += 16;
484b01c7715SBarry Smith         i2      += 4;
485b01c7715SBarry Smith       }
486b01c7715SBarry Smith       /* for logging purposes assume number of nonzero in lower half is 1/2 of total */
487efee365bSSatish Balay       ierr = PetscLogFlops(16*(a->nz));CHKERRQ(ierr);
488b01c7715SBarry Smith     }
489b01c7715SBarry Smith     if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) &&
490b01c7715SBarry Smith         (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) {
491b01c7715SBarry Smith       i2    = 0;
492b01c7715SBarry Smith       mdiag = a->idiag+16*a->mbs;
493b01c7715SBarry Smith       for (i=0; i<m; i++) {
494b01c7715SBarry Smith         x1      = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3];
495b01c7715SBarry Smith         x[i2]   = mdiag[0]*x1 + mdiag[4]*x2 + mdiag[8]*x3  + mdiag[12]*x4;
496b01c7715SBarry Smith         x[i2+1] = mdiag[1]*x1 + mdiag[5]*x2 + mdiag[9]*x3  + mdiag[13]*x4;
497b01c7715SBarry Smith         x[i2+2] = mdiag[2]*x1 + mdiag[6]*x2 + mdiag[10]*x3 + mdiag[14]*x4;
498b01c7715SBarry Smith         x[i2+3] = mdiag[3]*x1 + mdiag[7]*x2 + mdiag[11]*x3 + mdiag[15]*x4;
499b01c7715SBarry Smith         mdiag  += 16;
500b01c7715SBarry Smith         i2     += 4;
501b01c7715SBarry Smith       }
502efee365bSSatish Balay       ierr = PetscLogFlops(28*m);CHKERRQ(ierr);
503b01c7715SBarry Smith     } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
504899cda47SBarry Smith       ierr = PetscMemcpy(x,b,A->rmap.N*sizeof(PetscScalar));CHKERRQ(ierr);
505b01c7715SBarry Smith     }
506b01c7715SBarry Smith     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){
507b01c7715SBarry Smith       idiag   = a->idiag+16*a->mbs - 16;
508b01c7715SBarry Smith       i2      = 4*m - 4;
509b01c7715SBarry Smith       x1      = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3];
510b01c7715SBarry Smith       x[i2]   = idiag[0]*x1 + idiag[4]*x2 + idiag[8]*x3  + idiag[12]*x4;
511b01c7715SBarry Smith       x[i2+1] = idiag[1]*x1 + idiag[5]*x2 + idiag[9]*x3  + idiag[13]*x4;
512b01c7715SBarry Smith       x[i2+2] = idiag[2]*x1 + idiag[6]*x2 + idiag[10]*x3 + idiag[14]*x4;
513b01c7715SBarry Smith       x[i2+3] = idiag[3]*x1 + idiag[7]*x2 + idiag[11]*x3 + idiag[15]*x4;
514b01c7715SBarry Smith       idiag -= 16;
515b01c7715SBarry Smith       i2    -= 4;
516b01c7715SBarry Smith       for (i=m-2; i>=0; i--) {
517b01c7715SBarry Smith 	v     = aa + 16*(diag[i]+1);
518b01c7715SBarry Smith 	vi    = aj + diag[i] + 1;
519b01c7715SBarry Smith 	nz    = ai[i+1] - diag[i] - 1;
520b01c7715SBarry Smith 	s1    = x[i2]; s2 = x[i2+1]; s3 = x[i2+2]; s4 = x[i2+3];
521b01c7715SBarry Smith 	while (nz--) {
522b01c7715SBarry Smith 	  idx  = 4*(*vi++);
523b01c7715SBarry Smith 	  x1   = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx];
524b01c7715SBarry Smith 	  s1  -= v[0]*x1 + v[4]*x2 + v[8]*x3  + v[12]*x4;
525b01c7715SBarry Smith 	  s2  -= v[1]*x1 + v[5]*x2 + v[9]*x3  + v[13]*x4;
526b01c7715SBarry Smith 	  s3  -= v[2]*x1 + v[6]*x2 + v[10]*x3 + v[14]*x4;
527b01c7715SBarry Smith 	  s4  -= v[3]*x1 + v[7]*x2 + v[11]*x3 + v[15]*x4;
528b01c7715SBarry Smith 	  v   += 16;
529b01c7715SBarry Smith 	}
530b01c7715SBarry Smith 	x[i2]   = idiag[0]*s1 + idiag[4]*s2 + idiag[8]*s3  + idiag[12]*s4;
531b01c7715SBarry Smith 	x[i2+1] = idiag[1]*s1 + idiag[5]*s2 + idiag[9]*s3  + idiag[13]*s4;
532b01c7715SBarry Smith 	x[i2+2] = idiag[2]*s1 + idiag[6]*s2 + idiag[10]*s3 + idiag[14]*s4;
533b01c7715SBarry Smith 	x[i2+3] = idiag[3]*s1 + idiag[7]*s2 + idiag[11]*s3 + idiag[15]*s4;
534b01c7715SBarry Smith         idiag   -= 16;
535b01c7715SBarry Smith         i2      -= 4;
536b01c7715SBarry Smith       }
537efee365bSSatish Balay       ierr = PetscLogFlops(16*(a->nz));CHKERRQ(ierr);
538b01c7715SBarry Smith     }
539b01c7715SBarry Smith   } else {
540634064b4SBarry Smith     SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess");
541b01c7715SBarry Smith   }
5421ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
5431ebc52fbSHong Zhang   ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
544b01c7715SBarry Smith   PetscFunctionReturn(0);
545b01c7715SBarry Smith }
546b01c7715SBarry Smith 
547b01c7715SBarry Smith #undef __FUNCT__
548b01c7715SBarry Smith #define __FUNCT__ "MatPBRelax_SeqBAIJ_5"
549c1ac3661SBarry Smith PetscErrorCode MatPBRelax_SeqBAIJ_5(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
550b01c7715SBarry Smith {
551b01c7715SBarry Smith   Mat_SeqBAIJ        *a = (Mat_SeqBAIJ*)A->data;
552b01c7715SBarry Smith   PetscScalar        *x,x1,x2,x3,x4,x5,s1,s2,s3,s4,s5;
553dd6ea824SBarry Smith   const MatScalar    *v,*aa = a->a, *idiag,*mdiag;
554dd6ea824SBarry Smith   const PetscScalar  *b;
555dfbe8321SBarry Smith   PetscErrorCode     ierr;
556c1ac3661SBarry Smith   PetscInt           m = a->mbs,i,i2,nz,idx;
557c1ac3661SBarry Smith   const PetscInt     *diag,*ai = a->i,*aj = a->j,*vi;
558b01c7715SBarry Smith 
559b01c7715SBarry Smith   PetscFunctionBegin;
56071f1c65dSBarry Smith   if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat");
561b01c7715SBarry Smith   its = its*lits;
56277431f27SBarry Smith   if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
563b01c7715SBarry Smith   if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift");
564b01c7715SBarry Smith   if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor");
56571f1c65dSBarry Smith   if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts");
566b01c7715SBarry Smith   if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations");
567b01c7715SBarry Smith 
568b01c7715SBarry Smith   if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);}
569b01c7715SBarry Smith 
570b01c7715SBarry Smith   diag  = a->diag;
571b01c7715SBarry Smith   idiag = a->idiag;
5721ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
5731ebc52fbSHong Zhang   ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
574b01c7715SBarry Smith 
575b01c7715SBarry Smith   if (flag & SOR_ZERO_INITIAL_GUESS) {
576b01c7715SBarry Smith     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){
577b01c7715SBarry Smith       x[0] = b[0]*idiag[0] + b[1]*idiag[5] + b[2]*idiag[10] + b[3]*idiag[15] + b[4]*idiag[20];
578b01c7715SBarry Smith       x[1] = b[0]*idiag[1] + b[1]*idiag[6] + b[2]*idiag[11] + b[3]*idiag[16] + b[4]*idiag[21];
579b01c7715SBarry Smith       x[2] = b[0]*idiag[2] + b[1]*idiag[7] + b[2]*idiag[12] + b[3]*idiag[17] + b[4]*idiag[22];
580b01c7715SBarry Smith       x[3] = b[0]*idiag[3] + b[1]*idiag[8] + b[2]*idiag[13] + b[3]*idiag[18] + b[4]*idiag[23];
581b01c7715SBarry Smith       x[4] = b[0]*idiag[4] + b[1]*idiag[9] + b[2]*idiag[14] + b[3]*idiag[19] + b[4]*idiag[24];
582b01c7715SBarry Smith       i2     = 5;
583b01c7715SBarry Smith       idiag += 25;
584b01c7715SBarry Smith       for (i=1; i<m; i++) {
585b01c7715SBarry Smith 	v     = aa + 25*ai[i];
586b01c7715SBarry Smith 	vi    = aj + ai[i];
587b01c7715SBarry Smith 	nz    = diag[i] - ai[i];
588b01c7715SBarry Smith 	s1    = b[i2]; s2 = b[i2+1]; s3 = b[i2+2]; s4 = b[i2+3]; s5 = b[i2+4];
589b01c7715SBarry Smith 	while (nz--) {
590b01c7715SBarry Smith 	  idx  = 5*(*vi++);
591b01c7715SBarry Smith 	  x1   = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx];
592b01c7715SBarry Smith 	  s1  -= v[0]*x1 + v[5]*x2 + v[10]*x3 + v[15]*x4 + v[20]*x5;
593b01c7715SBarry Smith 	  s2  -= v[1]*x1 + v[6]*x2 + v[11]*x3 + v[16]*x4 + v[21]*x5;
594b01c7715SBarry Smith 	  s3  -= v[2]*x1 + v[7]*x2 + v[12]*x3 + v[17]*x4 + v[22]*x5;
595b01c7715SBarry Smith 	  s4  -= v[3]*x1 + v[8]*x2 + v[13]*x3 + v[18]*x4 + v[23]*x5;
596b01c7715SBarry Smith 	  s5  -= v[4]*x1 + v[9]*x2 + v[14]*x3 + v[19]*x4 + v[24]*x5;
597b01c7715SBarry Smith 	  v   += 25;
598b01c7715SBarry Smith 	}
599b01c7715SBarry Smith 	x[i2]   = idiag[0]*s1 + idiag[5]*s2 + idiag[10]*s3 + idiag[15]*s4 + idiag[20]*s5;
600b01c7715SBarry Smith 	x[i2+1] = idiag[1]*s1 + idiag[6]*s2 + idiag[11]*s3 + idiag[16]*s4 + idiag[21]*s5;
601b01c7715SBarry Smith 	x[i2+2] = idiag[2]*s1 + idiag[7]*s2 + idiag[12]*s3 + idiag[17]*s4 + idiag[22]*s5;
602b01c7715SBarry Smith 	x[i2+3] = idiag[3]*s1 + idiag[8]*s2 + idiag[13]*s3 + idiag[18]*s4 + idiag[23]*s5;
603b01c7715SBarry Smith 	x[i2+4] = idiag[4]*s1 + idiag[9]*s2 + idiag[14]*s3 + idiag[19]*s4 + idiag[24]*s5;
604b01c7715SBarry Smith         idiag   += 25;
605b01c7715SBarry Smith         i2      += 5;
606b01c7715SBarry Smith       }
607b01c7715SBarry Smith       /* for logging purposes assume number of nonzero in lower half is 1/2 of total */
608efee365bSSatish Balay       ierr = PetscLogFlops(25*(a->nz));CHKERRQ(ierr);
609b01c7715SBarry Smith     }
610b01c7715SBarry Smith     if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) &&
611b01c7715SBarry Smith         (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) {
612b01c7715SBarry Smith       i2    = 0;
613b01c7715SBarry Smith       mdiag = a->idiag+25*a->mbs;
614b01c7715SBarry Smith       for (i=0; i<m; i++) {
615b01c7715SBarry Smith         x1      = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4];
616b01c7715SBarry Smith         x[i2]   = mdiag[0]*x1 + mdiag[5]*x2 + mdiag[10]*x3 + mdiag[15]*x4 + mdiag[20]*x5;
617b01c7715SBarry Smith         x[i2+1] = mdiag[1]*x1 + mdiag[6]*x2 + mdiag[11]*x3 + mdiag[16]*x4 + mdiag[21]*x5;
618b01c7715SBarry Smith         x[i2+2] = mdiag[2]*x1 + mdiag[7]*x2 + mdiag[12]*x3 + mdiag[17]*x4 + mdiag[22]*x5;
619b01c7715SBarry Smith         x[i2+3] = mdiag[3]*x1 + mdiag[8]*x2 + mdiag[13]*x3 + mdiag[18]*x4 + mdiag[23]*x5;
620b01c7715SBarry Smith         x[i2+4] = mdiag[4]*x1 + mdiag[9]*x2 + mdiag[14]*x3 + mdiag[19]*x4 + mdiag[24]*x5;
621b01c7715SBarry Smith         mdiag  += 25;
622b01c7715SBarry Smith         i2     += 5;
623b01c7715SBarry Smith       }
624efee365bSSatish Balay       ierr = PetscLogFlops(45*m);CHKERRQ(ierr);
625b01c7715SBarry Smith     } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
626899cda47SBarry Smith       ierr = PetscMemcpy(x,b,A->rmap.N*sizeof(PetscScalar));CHKERRQ(ierr);
627b01c7715SBarry Smith     }
628b01c7715SBarry Smith     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){
629b01c7715SBarry Smith       idiag   = a->idiag+25*a->mbs - 25;
630b01c7715SBarry Smith       i2      = 5*m - 5;
631b01c7715SBarry Smith       x1      = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4];
632b01c7715SBarry Smith       x[i2]   = idiag[0]*x1 + idiag[5]*x2 + idiag[10]*x3 + idiag[15]*x4 + idiag[20]*x5;
633b01c7715SBarry Smith       x[i2+1] = idiag[1]*x1 + idiag[6]*x2 + idiag[11]*x3 + idiag[16]*x4 + idiag[21]*x5;
634b01c7715SBarry Smith       x[i2+2] = idiag[2]*x1 + idiag[7]*x2 + idiag[12]*x3 + idiag[17]*x4 + idiag[22]*x5;
635b01c7715SBarry Smith       x[i2+3] = idiag[3]*x1 + idiag[8]*x2 + idiag[13]*x3 + idiag[18]*x4 + idiag[23]*x5;
636b01c7715SBarry Smith       x[i2+4] = idiag[4]*x1 + idiag[9]*x2 + idiag[14]*x3 + idiag[19]*x4 + idiag[24]*x5;
637b01c7715SBarry Smith       idiag -= 25;
638b01c7715SBarry Smith       i2    -= 5;
639b01c7715SBarry Smith       for (i=m-2; i>=0; i--) {
640b01c7715SBarry Smith 	v     = aa + 25*(diag[i]+1);
641b01c7715SBarry Smith 	vi    = aj + diag[i] + 1;
642b01c7715SBarry Smith 	nz    = ai[i+1] - diag[i] - 1;
643b01c7715SBarry Smith 	s1    = x[i2]; s2 = x[i2+1]; s3 = x[i2+2]; s4 = x[i2+3]; s5 = x[i2+4];
644b01c7715SBarry Smith 	while (nz--) {
645b01c7715SBarry Smith 	  idx  = 5*(*vi++);
646b01c7715SBarry Smith 	  x1   = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx];
647b01c7715SBarry Smith 	  s1  -= v[0]*x1 + v[5]*x2 + v[10]*x3 + v[15]*x4 + v[20]*x5;
648b01c7715SBarry Smith 	  s2  -= v[1]*x1 + v[6]*x2 + v[11]*x3 + v[16]*x4 + v[21]*x5;
649b01c7715SBarry Smith 	  s3  -= v[2]*x1 + v[7]*x2 + v[12]*x3 + v[17]*x4 + v[22]*x5;
650b01c7715SBarry Smith 	  s4  -= v[3]*x1 + v[8]*x2 + v[13]*x3 + v[18]*x4 + v[23]*x5;
651b01c7715SBarry Smith 	  s5  -= v[4]*x1 + v[9]*x2 + v[14]*x3 + v[19]*x4 + v[24]*x5;
652b01c7715SBarry Smith 	  v   += 25;
653b01c7715SBarry Smith 	}
654b01c7715SBarry Smith 	x[i2]   = idiag[0]*s1 + idiag[5]*s2 + idiag[10]*s3 + idiag[15]*s4 + idiag[20]*s5;
655b01c7715SBarry Smith 	x[i2+1] = idiag[1]*s1 + idiag[6]*s2 + idiag[11]*s3 + idiag[16]*s4 + idiag[21]*s5;
656b01c7715SBarry Smith 	x[i2+2] = idiag[2]*s1 + idiag[7]*s2 + idiag[12]*s3 + idiag[17]*s4 + idiag[22]*s5;
657b01c7715SBarry Smith 	x[i2+3] = idiag[3]*s1 + idiag[8]*s2 + idiag[13]*s3 + idiag[18]*s4 + idiag[23]*s5;
658b01c7715SBarry Smith 	x[i2+4] = idiag[4]*s1 + idiag[9]*s2 + idiag[14]*s3 + idiag[19]*s4 + idiag[24]*s5;
659b01c7715SBarry Smith         idiag   -= 25;
660b01c7715SBarry Smith         i2      -= 5;
661b01c7715SBarry Smith       }
662efee365bSSatish Balay       ierr = PetscLogFlops(25*(a->nz));CHKERRQ(ierr);
663b01c7715SBarry Smith     }
664b01c7715SBarry Smith   } else {
665634064b4SBarry Smith     SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess");
666b01c7715SBarry Smith   }
6671ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
6681ebc52fbSHong Zhang   ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
669b01c7715SBarry Smith   PetscFunctionReturn(0);
670b01c7715SBarry Smith }
671b01c7715SBarry Smith 
6726d3beeddSMatthew Knepley #undef __FUNCT__
6736d3beeddSMatthew Knepley #define __FUNCT__ "MatPBRelax_SeqBAIJ_6"
6746d3beeddSMatthew Knepley PetscErrorCode MatPBRelax_SeqBAIJ_6(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
6756d3beeddSMatthew Knepley {
6766d3beeddSMatthew Knepley   Mat_SeqBAIJ        *a = (Mat_SeqBAIJ*)A->data;
6776d3beeddSMatthew Knepley   PetscScalar        *x,x1,x2,x3,x4,x5,x6,s1,s2,s3,s4,s5,s6;
678dd6ea824SBarry Smith   const MatScalar    *v,*aa = a->a, *idiag,*mdiag;
679dd6ea824SBarry Smith   const PetscScalar  *b;
6806d3beeddSMatthew Knepley   PetscErrorCode     ierr;
6816d3beeddSMatthew Knepley   PetscInt           m = a->mbs,i,i2,nz,idx;
6826d3beeddSMatthew Knepley   const PetscInt     *diag,*ai = a->i,*aj = a->j,*vi;
6836d3beeddSMatthew Knepley 
6846d3beeddSMatthew Knepley   PetscFunctionBegin;
6856d3beeddSMatthew Knepley   if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat");
6866d3beeddSMatthew Knepley   its = its*lits;
6876d3beeddSMatthew Knepley   if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
6886d3beeddSMatthew Knepley   if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift");
6896d3beeddSMatthew Knepley   if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor");
6906d3beeddSMatthew Knepley   if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts");
6916d3beeddSMatthew Knepley   if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations");
6926d3beeddSMatthew Knepley 
6936d3beeddSMatthew Knepley   if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);}
6946d3beeddSMatthew Knepley 
6956d3beeddSMatthew Knepley   diag  = a->diag;
6966d3beeddSMatthew Knepley   idiag = a->idiag;
6976d3beeddSMatthew Knepley   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
6986d3beeddSMatthew Knepley   ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
6996d3beeddSMatthew Knepley 
7006d3beeddSMatthew Knepley   if (flag & SOR_ZERO_INITIAL_GUESS) {
7016d3beeddSMatthew Knepley     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){
7026d3beeddSMatthew Knepley       x[0] = b[0]*idiag[0] + b[1]*idiag[6]  + b[2]*idiag[12] + b[3]*idiag[18] + b[4]*idiag[24] + b[5]*idiag[30];
7036d3beeddSMatthew Knepley       x[1] = b[0]*idiag[1] + b[1]*idiag[7]  + b[2]*idiag[13] + b[3]*idiag[19] + b[4]*idiag[25] + b[5]*idiag[31];
7046d3beeddSMatthew Knepley       x[2] = b[0]*idiag[2] + b[1]*idiag[8]  + b[2]*idiag[14] + b[3]*idiag[20] + b[4]*idiag[26] + b[5]*idiag[32];
7056d3beeddSMatthew Knepley       x[3] = b[0]*idiag[3] + b[1]*idiag[9]  + b[2]*idiag[15] + b[3]*idiag[21] + b[4]*idiag[27] + b[5]*idiag[33];
7066d3beeddSMatthew Knepley       x[4] = b[0]*idiag[4] + b[1]*idiag[10] + b[2]*idiag[16] + b[3]*idiag[22] + b[4]*idiag[28] + b[5]*idiag[34];
7076d3beeddSMatthew Knepley       x[5] = b[0]*idiag[5] + b[1]*idiag[11] + b[2]*idiag[17] + b[3]*idiag[23] + b[4]*idiag[29] + b[5]*idiag[35];
7086d3beeddSMatthew Knepley       i2     = 6;
7096d3beeddSMatthew Knepley       idiag += 36;
7106d3beeddSMatthew Knepley       for (i=1; i<m; i++) {
7116d3beeddSMatthew Knepley         v     = aa + 36*ai[i];
7126d3beeddSMatthew Knepley         vi    = aj + ai[i];
7136d3beeddSMatthew Knepley         nz    = diag[i] - ai[i];
7146d3beeddSMatthew Knepley         s1    = b[i2]; s2 = b[i2+1]; s3 = b[i2+2]; s4 = b[i2+3]; s5 = b[i2+4]; s6 = b[i2+5];
7156d3beeddSMatthew Knepley         while (nz--) {
7166d3beeddSMatthew Knepley           idx  = 6*(*vi++);
7176d3beeddSMatthew Knepley           x1   = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx]; x6 = x[5+idx];
7186d3beeddSMatthew Knepley           s1  -= v[0]*x1 + v[6]*x2  + v[12]*x3 + v[18]*x4 + v[24]*x5 + v[30]*x6;
7196d3beeddSMatthew Knepley           s2  -= v[1]*x1 + v[7]*x2  + v[13]*x3 + v[19]*x4 + v[25]*x5 + v[31]*x6;
7206d3beeddSMatthew Knepley           s3  -= v[2]*x1 + v[8]*x2  + v[14]*x3 + v[20]*x4 + v[26]*x5 + v[32]*x6;
7216d3beeddSMatthew Knepley           s4  -= v[3]*x1 + v[9]*x2  + v[15]*x3 + v[21]*x4 + v[27]*x5 + v[33]*x6;
7226d3beeddSMatthew Knepley           s5  -= v[4]*x1 + v[10]*x2 + v[16]*x3 + v[22]*x4 + v[28]*x5 + v[34]*x6;
7236d3beeddSMatthew Knepley           s6  -= v[5]*x1 + v[11]*x2 + v[17]*x3 + v[23]*x4 + v[29]*x5 + v[35]*x6;
7246d3beeddSMatthew Knepley           v   += 36;
7256d3beeddSMatthew Knepley         }
7266d3beeddSMatthew Knepley         x[i2]   = idiag[0]*s1 + idiag[6]*s2  + idiag[12]*s3 + idiag[18]*s4 + idiag[24]*s5 + idiag[30]*s6;
7276d3beeddSMatthew Knepley         x[i2+1] = idiag[1]*s1 + idiag[7]*s2  + idiag[13]*s3 + idiag[19]*s4 + idiag[25]*s5 + idiag[31]*s6;
7286d3beeddSMatthew Knepley         x[i2+2] = idiag[2]*s1 + idiag[8]*s2  + idiag[14]*s3 + idiag[20]*s4 + idiag[26]*s5 + idiag[32]*s6;
7296d3beeddSMatthew Knepley         x[i2+3] = idiag[3]*s1 + idiag[9]*s2  + idiag[15]*s3 + idiag[21]*s4 + idiag[27]*s5 + idiag[33]*s6;
7306d3beeddSMatthew Knepley         x[i2+4] = idiag[4]*s1 + idiag[10]*s2 + idiag[16]*s3 + idiag[22]*s4 + idiag[28]*s5 + idiag[34]*s6;
7316d3beeddSMatthew Knepley         x[i2+5] = idiag[5]*s1 + idiag[11]*s2 + idiag[17]*s3 + idiag[23]*s4 + idiag[29]*s5 + idiag[35]*s6;
7326d3beeddSMatthew Knepley         idiag   += 36;
7336d3beeddSMatthew Knepley         i2      += 6;
7346d3beeddSMatthew Knepley       }
7356d3beeddSMatthew Knepley       /* for logging purposes assume number of nonzero in lower half is 1/2 of total */
7366d3beeddSMatthew Knepley       ierr = PetscLogFlops(36*(a->nz));CHKERRQ(ierr);
7376d3beeddSMatthew Knepley     }
7386d3beeddSMatthew Knepley     if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) &&
7396d3beeddSMatthew Knepley         (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) {
7406d3beeddSMatthew Knepley       i2    = 0;
7416d3beeddSMatthew Knepley       mdiag = a->idiag+36*a->mbs;
7426d3beeddSMatthew Knepley       for (i=0; i<m; i++) {
7436d3beeddSMatthew Knepley         x1      = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4]; x6 = x[i2+5];
7446d3beeddSMatthew Knepley         x[i2]   = mdiag[0]*x1 + mdiag[6]*x2  + mdiag[12]*x3 + mdiag[18]*x4 + mdiag[24]*x5 + mdiag[30]*x6;
7456d3beeddSMatthew Knepley         x[i2+1] = mdiag[1]*x1 + mdiag[7]*x2  + mdiag[13]*x3 + mdiag[19]*x4 + mdiag[25]*x5 + mdiag[31]*x6;
7466d3beeddSMatthew Knepley         x[i2+2] = mdiag[2]*x1 + mdiag[8]*x2  + mdiag[14]*x3 + mdiag[20]*x4 + mdiag[26]*x5 + mdiag[32]*x6;
7476d3beeddSMatthew Knepley         x[i2+3] = mdiag[3]*x1 + mdiag[9]*x2  + mdiag[15]*x3 + mdiag[21]*x4 + mdiag[27]*x5 + mdiag[33]*x6;
7486d3beeddSMatthew Knepley         x[i2+4] = mdiag[4]*x1 + mdiag[10]*x2 + mdiag[16]*x3 + mdiag[22]*x4 + mdiag[28]*x5 + mdiag[34]*x6;
7496d3beeddSMatthew Knepley         x[i2+5] = mdiag[5]*x1 + mdiag[11]*x2 + mdiag[17]*x3 + mdiag[23]*x4 + mdiag[29]*x5 + mdiag[35]*x6;
7506d3beeddSMatthew Knepley         mdiag  += 36;
7516d3beeddSMatthew Knepley         i2     += 6;
7526d3beeddSMatthew Knepley       }
7536d3beeddSMatthew Knepley       ierr = PetscLogFlops(60*m);CHKERRQ(ierr);
7546d3beeddSMatthew Knepley     } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
7556d3beeddSMatthew Knepley       ierr = PetscMemcpy(x,b,A->rmap.N*sizeof(PetscScalar));CHKERRQ(ierr);
7566d3beeddSMatthew Knepley     }
7576d3beeddSMatthew Knepley     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){
7586d3beeddSMatthew Knepley       idiag   = a->idiag+36*a->mbs - 36;
7596d3beeddSMatthew Knepley       i2      = 6*m - 6;
7606d3beeddSMatthew Knepley       x1      = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4]; x6 = x[i2+5];
7616d3beeddSMatthew Knepley       x[i2]   = idiag[0]*x1 + idiag[6]*x2  + idiag[12]*x3 + idiag[18]*x4 + idiag[24]*x5 + idiag[30]*x6;
7626d3beeddSMatthew Knepley       x[i2+1] = idiag[1]*x1 + idiag[7]*x2  + idiag[13]*x3 + idiag[19]*x4 + idiag[25]*x5 + idiag[31]*x6;
7636d3beeddSMatthew Knepley       x[i2+2] = idiag[2]*x1 + idiag[8]*x2  + idiag[14]*x3 + idiag[20]*x4 + idiag[26]*x5 + idiag[32]*x6;
7646d3beeddSMatthew Knepley       x[i2+3] = idiag[3]*x1 + idiag[9]*x2  + idiag[15]*x3 + idiag[21]*x4 + idiag[27]*x5 + idiag[33]*x6;
7656d3beeddSMatthew Knepley       x[i2+4] = idiag[4]*x1 + idiag[10]*x2 + idiag[16]*x3 + idiag[22]*x4 + idiag[28]*x5 + idiag[34]*x6;
7666d3beeddSMatthew Knepley       x[i2+5] = idiag[5]*x1 + idiag[11]*x2 + idiag[17]*x3 + idiag[23]*x4 + idiag[29]*x5 + idiag[35]*x6;
7676d3beeddSMatthew Knepley       idiag -= 36;
7686d3beeddSMatthew Knepley       i2    -= 6;
7696d3beeddSMatthew Knepley       for (i=m-2; i>=0; i--) {
7706d3beeddSMatthew Knepley         v     = aa + 36*(diag[i]+1);
7716d3beeddSMatthew Knepley         vi    = aj + diag[i] + 1;
7726d3beeddSMatthew Knepley         nz    = ai[i+1] - diag[i] - 1;
7736d3beeddSMatthew Knepley         s1    = x[i2]; s2 = x[i2+1]; s3 = x[i2+2]; s4 = x[i2+3]; s5 = x[i2+4]; s6 = x[i2+5];
7746d3beeddSMatthew Knepley         while (nz--) {
7756d3beeddSMatthew Knepley           idx  = 6*(*vi++);
7766d3beeddSMatthew Knepley           x1   = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx]; x6 = x[5+idx];
7776d3beeddSMatthew Knepley           s1  -= v[0]*x1 + v[6]*x2  + v[12]*x3 + v[18]*x4 + v[24]*x5 + v[30]*x6;
7786d3beeddSMatthew Knepley           s2  -= v[1]*x1 + v[7]*x2  + v[13]*x3 + v[19]*x4 + v[25]*x5 + v[31]*x6;
7796d3beeddSMatthew Knepley           s3  -= v[2]*x1 + v[8]*x2  + v[14]*x3 + v[20]*x4 + v[26]*x5 + v[32]*x6;
7806d3beeddSMatthew Knepley           s4  -= v[3]*x1 + v[9]*x2  + v[15]*x3 + v[21]*x4 + v[27]*x5 + v[33]*x6;
7816d3beeddSMatthew Knepley           s5  -= v[4]*x1 + v[10]*x2 + v[16]*x3 + v[22]*x4 + v[28]*x5 + v[34]*x6;
7826d3beeddSMatthew Knepley           s6  -= v[5]*x1 + v[11]*x2 + v[17]*x3 + v[23]*x4 + v[29]*x5 + v[35]*x6;
7836d3beeddSMatthew Knepley           v   += 36;
7846d3beeddSMatthew Knepley         }
7856d3beeddSMatthew Knepley         x[i2]   = idiag[0]*s1 + idiag[6]*s2  + idiag[12]*s3 + idiag[18]*s4 + idiag[24]*s5 + idiag[30]*s6;
7866d3beeddSMatthew Knepley         x[i2+1] = idiag[1]*s1 + idiag[7]*s2  + idiag[13]*s3 + idiag[19]*s4 + idiag[25]*s5 + idiag[31]*s6;
7876d3beeddSMatthew Knepley         x[i2+2] = idiag[2]*s1 + idiag[8]*s2  + idiag[14]*s3 + idiag[20]*s4 + idiag[26]*s5 + idiag[32]*s6;
7886d3beeddSMatthew Knepley         x[i2+3] = idiag[3]*s1 + idiag[9]*s2  + idiag[15]*s3 + idiag[21]*s4 + idiag[27]*s5 + idiag[33]*s6;
7896d3beeddSMatthew Knepley         x[i2+4] = idiag[4]*s1 + idiag[10]*s2 + idiag[16]*s3 + idiag[22]*s4 + idiag[28]*s5 + idiag[34]*s6;
7906d3beeddSMatthew Knepley         x[i2+5] = idiag[5]*s1 + idiag[11]*s2 + idiag[17]*s3 + idiag[23]*s4 + idiag[29]*s5 + idiag[35]*s6;
7916d3beeddSMatthew Knepley         idiag   -= 36;
7926d3beeddSMatthew Knepley         i2      -= 6;
7936d3beeddSMatthew Knepley       }
7946d3beeddSMatthew Knepley       ierr = PetscLogFlops(36*(a->nz));CHKERRQ(ierr);
7956d3beeddSMatthew Knepley     }
7966d3beeddSMatthew Knepley   } else {
7976d3beeddSMatthew Knepley     SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess");
7986d3beeddSMatthew Knepley   }
7996d3beeddSMatthew Knepley   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
8006d3beeddSMatthew Knepley   ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
8016d3beeddSMatthew Knepley   PetscFunctionReturn(0);
8026d3beeddSMatthew Knepley }
8036d3beeddSMatthew Knepley 
8046d3beeddSMatthew Knepley #undef __FUNCT__
8056d3beeddSMatthew Knepley #define __FUNCT__ "MatPBRelax_SeqBAIJ_7"
8066d3beeddSMatthew Knepley PetscErrorCode MatPBRelax_SeqBAIJ_7(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
8076d3beeddSMatthew Knepley {
8086d3beeddSMatthew Knepley   Mat_SeqBAIJ        *a = (Mat_SeqBAIJ*)A->data;
8096d3beeddSMatthew Knepley   PetscScalar        *x,x1,x2,x3,x4,x5,x6,x7,s1,s2,s3,s4,s5,s6,s7;
810dd6ea824SBarry Smith   const MatScalar    *v,*aa = a->a, *idiag,*mdiag;
811dd6ea824SBarry Smith   const PetscScalar  *b;
8126d3beeddSMatthew Knepley   PetscErrorCode     ierr;
8136d3beeddSMatthew Knepley   PetscInt           m = a->mbs,i,i2,nz,idx;
8146d3beeddSMatthew Knepley   const PetscInt     *diag,*ai = a->i,*aj = a->j,*vi;
8156d3beeddSMatthew Knepley 
8166d3beeddSMatthew Knepley   PetscFunctionBegin;
8176d3beeddSMatthew Knepley   if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat");
8186d3beeddSMatthew Knepley   its = its*lits;
8196d3beeddSMatthew Knepley   if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
8206d3beeddSMatthew Knepley   if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift");
8216d3beeddSMatthew Knepley   if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor");
8226d3beeddSMatthew Knepley   if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts");
8236d3beeddSMatthew Knepley   if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations");
8246d3beeddSMatthew Knepley 
8256d3beeddSMatthew Knepley   if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);}
8266d3beeddSMatthew Knepley 
8276d3beeddSMatthew Knepley   diag  = a->diag;
8286d3beeddSMatthew Knepley   idiag = a->idiag;
8296d3beeddSMatthew Knepley   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
8306d3beeddSMatthew Knepley   ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
8316d3beeddSMatthew Knepley 
8326d3beeddSMatthew Knepley   if (flag & SOR_ZERO_INITIAL_GUESS) {
8336d3beeddSMatthew Knepley     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){
8346d3beeddSMatthew Knepley       x[0] = b[0]*idiag[0] + b[1]*idiag[7]  + b[2]*idiag[14] + b[3]*idiag[21] + b[4]*idiag[28] + b[5]*idiag[35] + b[6]*idiag[42];
8356d3beeddSMatthew Knepley       x[1] = b[0]*idiag[1] + b[1]*idiag[8]  + b[2]*idiag[15] + b[3]*idiag[22] + b[4]*idiag[29] + b[5]*idiag[36] + b[6]*idiag[43];
8366d3beeddSMatthew Knepley       x[2] = b[0]*idiag[2] + b[1]*idiag[9]  + b[2]*idiag[16] + b[3]*idiag[23] + b[4]*idiag[30] + b[5]*idiag[37] + b[6]*idiag[44];
8376d3beeddSMatthew Knepley       x[3] = b[0]*idiag[3] + b[1]*idiag[10] + b[2]*idiag[17] + b[3]*idiag[24] + b[4]*idiag[31] + b[5]*idiag[38] + b[6]*idiag[45];
8386d3beeddSMatthew Knepley       x[4] = b[0]*idiag[4] + b[1]*idiag[11] + b[2]*idiag[18] + b[3]*idiag[25] + b[4]*idiag[32] + b[5]*idiag[39] + b[6]*idiag[46];
8396d3beeddSMatthew Knepley       x[5] = b[0]*idiag[5] + b[1]*idiag[12] + b[2]*idiag[19] + b[3]*idiag[26] + b[4]*idiag[33] + b[5]*idiag[40] + b[6]*idiag[47];
8406d3beeddSMatthew Knepley       x[6] = b[0]*idiag[6] + b[1]*idiag[13] + b[2]*idiag[20] + b[3]*idiag[27] + b[4]*idiag[34] + b[5]*idiag[41] + b[6]*idiag[48];
8416d3beeddSMatthew Knepley       i2     = 7;
8426d3beeddSMatthew Knepley       idiag += 49;
8436d3beeddSMatthew Knepley       for (i=1; i<m; i++) {
8446d3beeddSMatthew Knepley         v     = aa + 49*ai[i];
8456d3beeddSMatthew Knepley         vi    = aj + ai[i];
8466d3beeddSMatthew Knepley         nz    = diag[i] - ai[i];
8476d3beeddSMatthew Knepley         s1    = b[i2]; s2 = b[i2+1]; s3 = b[i2+2]; s4 = b[i2+3]; s5 = b[i2+4]; s6 = b[i2+5]; s7 = b[i2+6];
8486d3beeddSMatthew Knepley         while (nz--) {
8496d3beeddSMatthew Knepley           idx  = 7*(*vi++);
8506d3beeddSMatthew Knepley           x1   = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx]; x6 = x[5+idx]; x7 = x[6+idx];
8516d3beeddSMatthew Knepley           s1  -= v[0]*x1 + v[7]*x2  + v[14]*x3 + v[21]*x4 + v[28]*x5 + v[35]*x6 + v[42]*x7;
8526d3beeddSMatthew Knepley           s2  -= v[1]*x1 + v[8]*x2  + v[15]*x3 + v[22]*x4 + v[29]*x5 + v[36]*x6 + v[43]*x7;
8536d3beeddSMatthew Knepley           s3  -= v[2]*x1 + v[9]*x2  + v[16]*x3 + v[23]*x4 + v[30]*x5 + v[37]*x6 + v[44]*x7;
8546d3beeddSMatthew Knepley           s4  -= v[3]*x1 + v[10]*x2 + v[17]*x3 + v[24]*x4 + v[31]*x5 + v[38]*x6 + v[45]*x7;
8556d3beeddSMatthew Knepley           s5  -= v[4]*x1 + v[11]*x2 + v[18]*x3 + v[25]*x4 + v[32]*x5 + v[39]*x6 + v[46]*x7;
8566d3beeddSMatthew Knepley           s6  -= v[5]*x1 + v[12]*x2 + v[19]*x3 + v[26]*x4 + v[33]*x5 + v[40]*x6 + v[47]*x7;
8576d3beeddSMatthew Knepley           s7  -= v[6]*x1 + v[13]*x2 + v[20]*x3 + v[27]*x4 + v[34]*x5 + v[41]*x6 + v[48]*x7;
8586d3beeddSMatthew Knepley           v   += 49;
8596d3beeddSMatthew Knepley         }
8606d3beeddSMatthew Knepley         x[i2]   = idiag[0]*s1 + idiag[7]*s2  + idiag[14]*s3 + idiag[21]*s4 + idiag[28]*s5 + idiag[35]*s6 + idiag[42]*s7;
8616d3beeddSMatthew Knepley         x[i2+1] = idiag[1]*s1 + idiag[8]*s2  + idiag[15]*s3 + idiag[22]*s4 + idiag[29]*s5 + idiag[36]*s6 + idiag[43]*s7;
8626d3beeddSMatthew Knepley         x[i2+2] = idiag[2]*s1 + idiag[9]*s2  + idiag[16]*s3 + idiag[23]*s4 + idiag[30]*s5 + idiag[37]*s6 + idiag[44]*s7;
8636d3beeddSMatthew Knepley         x[i2+3] = idiag[3]*s1 + idiag[10]*s2 + idiag[17]*s3 + idiag[24]*s4 + idiag[31]*s5 + idiag[38]*s6 + idiag[45]*s7;
8646d3beeddSMatthew Knepley         x[i2+4] = idiag[4]*s1 + idiag[11]*s2 + idiag[18]*s3 + idiag[25]*s4 + idiag[32]*s5 + idiag[39]*s6 + idiag[46]*s7;
8656d3beeddSMatthew Knepley         x[i2+5] = idiag[5]*s1 + idiag[12]*s2 + idiag[19]*s3 + idiag[26]*s4 + idiag[33]*s5 + idiag[40]*s6 + idiag[47]*s7;
8666d3beeddSMatthew Knepley         x[i2+6] = idiag[6]*s1 + idiag[13]*s2 + idiag[20]*s3 + idiag[27]*s4 + idiag[34]*s5 + idiag[41]*s6 + idiag[48]*s7;
8676d3beeddSMatthew Knepley         idiag   += 49;
8686d3beeddSMatthew Knepley         i2      += 7;
8696d3beeddSMatthew Knepley       }
8706d3beeddSMatthew Knepley       /* for logging purposes assume number of nonzero in lower half is 1/2 of total */
8716d3beeddSMatthew Knepley       ierr = PetscLogFlops(49*(a->nz));CHKERRQ(ierr);
8726d3beeddSMatthew Knepley     }
8736d3beeddSMatthew Knepley     if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) &&
8746d3beeddSMatthew Knepley         (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) {
8756d3beeddSMatthew Knepley       i2    = 0;
8766d3beeddSMatthew Knepley       mdiag = a->idiag+49*a->mbs;
8776d3beeddSMatthew Knepley       for (i=0; i<m; i++) {
8786d3beeddSMatthew Knepley         x1      = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4]; x6 = x[i2+5]; x7 = x[i2+6];
8796d3beeddSMatthew Knepley         x[i2]   = mdiag[0]*x1 + mdiag[7]*x2  + mdiag[14]*x3 + mdiag[21]*x4 + mdiag[28]*x5 + mdiag[35]*x6 + mdiag[35]*x7;
8806d3beeddSMatthew Knepley         x[i2+1] = mdiag[1]*x1 + mdiag[8]*x2  + mdiag[15]*x3 + mdiag[22]*x4 + mdiag[29]*x5 + mdiag[36]*x6 + mdiag[36]*x7;
8816d3beeddSMatthew Knepley         x[i2+2] = mdiag[2]*x1 + mdiag[9]*x2  + mdiag[16]*x3 + mdiag[23]*x4 + mdiag[30]*x5 + mdiag[37]*x6 + mdiag[37]*x7;
8826d3beeddSMatthew Knepley         x[i2+3] = mdiag[3]*x1 + mdiag[10]*x2 + mdiag[17]*x3 + mdiag[24]*x4 + mdiag[31]*x5 + mdiag[38]*x6 + mdiag[38]*x7;
8836d3beeddSMatthew Knepley         x[i2+4] = mdiag[4]*x1 + mdiag[11]*x2 + mdiag[18]*x3 + mdiag[25]*x4 + mdiag[32]*x5 + mdiag[39]*x6 + mdiag[39]*x7;
8846d3beeddSMatthew Knepley         x[i2+5] = mdiag[5]*x1 + mdiag[12]*x2 + mdiag[19]*x3 + mdiag[26]*x4 + mdiag[33]*x5 + mdiag[40]*x6 + mdiag[40]*x7;
8856d3beeddSMatthew Knepley         x[i2+6] = mdiag[6]*x1 + mdiag[13]*x2 + mdiag[20]*x3 + mdiag[27]*x4 + mdiag[34]*x5 + mdiag[41]*x6 + mdiag[41]*x7;
8866d3beeddSMatthew Knepley         mdiag  += 36;
8876d3beeddSMatthew Knepley         i2     += 6;
8886d3beeddSMatthew Knepley       }
8896d3beeddSMatthew Knepley       ierr = PetscLogFlops(93*m);CHKERRQ(ierr);
8906d3beeddSMatthew Knepley     } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
8916d3beeddSMatthew Knepley       ierr = PetscMemcpy(x,b,A->rmap.N*sizeof(PetscScalar));CHKERRQ(ierr);
8926d3beeddSMatthew Knepley     }
8936d3beeddSMatthew Knepley     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){
8946d3beeddSMatthew Knepley       idiag   = a->idiag+49*a->mbs - 49;
8956d3beeddSMatthew Knepley       i2      = 7*m - 7;
8966d3beeddSMatthew Knepley       x1      = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4]; x6 = x[i2+5]; x7 = x[i2+6];
8976d3beeddSMatthew Knepley       x[i2]   = idiag[0]*x1 + idiag[7]*x2  + idiag[14]*x3 + idiag[21]*x4 + idiag[28]*x5 + idiag[35]*x6 + idiag[42]*x7;
8986d3beeddSMatthew Knepley       x[i2+1] = idiag[1]*x1 + idiag[8]*x2  + idiag[15]*x3 + idiag[22]*x4 + idiag[29]*x5 + idiag[36]*x6 + idiag[43]*x7;
8996d3beeddSMatthew Knepley       x[i2+2] = idiag[2]*x1 + idiag[9]*x2  + idiag[16]*x3 + idiag[23]*x4 + idiag[30]*x5 + idiag[37]*x6 + idiag[44]*x7;
9006d3beeddSMatthew Knepley       x[i2+3] = idiag[3]*x1 + idiag[10]*x2 + idiag[17]*x3 + idiag[24]*x4 + idiag[31]*x5 + idiag[38]*x6 + idiag[45]*x7;
9016d3beeddSMatthew Knepley       x[i2+4] = idiag[4]*x1 + idiag[11]*x2 + idiag[18]*x3 + idiag[25]*x4 + idiag[32]*x5 + idiag[39]*x6 + idiag[46]*x7;
9026d3beeddSMatthew Knepley       x[i2+5] = idiag[5]*x1 + idiag[12]*x2 + idiag[19]*x3 + idiag[26]*x4 + idiag[33]*x5 + idiag[40]*x6 + idiag[47]*x7;
9036d3beeddSMatthew Knepley       x[i2+6] = idiag[6]*x1 + idiag[13]*x2 + idiag[20]*x3 + idiag[27]*x4 + idiag[34]*x5 + idiag[41]*x6 + idiag[48]*x7;
9046d3beeddSMatthew Knepley       idiag -= 49;
9056d3beeddSMatthew Knepley       i2    -= 7;
9066d3beeddSMatthew Knepley       for (i=m-2; i>=0; i--) {
9076d3beeddSMatthew Knepley         v     = aa + 49*(diag[i]+1);
9086d3beeddSMatthew Knepley         vi    = aj + diag[i] + 1;
9096d3beeddSMatthew Knepley         nz    = ai[i+1] - diag[i] - 1;
9106d3beeddSMatthew Knepley         s1    = x[i2]; s2 = x[i2+1]; s3 = x[i2+2]; s4 = x[i2+3]; s5 = x[i2+4]; s6 = x[i2+5]; s7 = x[i2+6];
9116d3beeddSMatthew Knepley         while (nz--) {
9126d3beeddSMatthew Knepley           idx  = 7*(*vi++);
9136d3beeddSMatthew Knepley           x1   = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx]; x6 = x[5+idx]; x7 = x[6+idx];
9146d3beeddSMatthew Knepley           s1  -= v[0]*x1 + v[7]*x2  + v[14]*x3 + v[21]*x4 + v[28]*x5 + v[35]*x6 + v[42]*x7;
9156d3beeddSMatthew Knepley           s2  -= v[1]*x1 + v[8]*x2  + v[15]*x3 + v[22]*x4 + v[29]*x5 + v[36]*x6 + v[43]*x7;
9166d3beeddSMatthew Knepley           s3  -= v[2]*x1 + v[9]*x2  + v[16]*x3 + v[23]*x4 + v[30]*x5 + v[37]*x6 + v[44]*x7;
9176d3beeddSMatthew Knepley           s4  -= v[3]*x1 + v[10]*x2 + v[17]*x3 + v[24]*x4 + v[31]*x5 + v[38]*x6 + v[45]*x7;
9186d3beeddSMatthew Knepley           s5  -= v[4]*x1 + v[11]*x2 + v[18]*x3 + v[25]*x4 + v[32]*x5 + v[39]*x6 + v[46]*x7;
9196d3beeddSMatthew Knepley           s6  -= v[5]*x1 + v[12]*x2 + v[19]*x3 + v[26]*x4 + v[33]*x5 + v[40]*x6 + v[47]*x7;
9206d3beeddSMatthew Knepley           s7  -= v[6]*x1 + v[13]*x2 + v[20]*x3 + v[27]*x4 + v[34]*x5 + v[41]*x6 + v[48]*x7;
9216d3beeddSMatthew Knepley           v   += 49;
9226d3beeddSMatthew Knepley         }
9236d3beeddSMatthew Knepley         x[i2]   = idiag[0]*s1 + idiag[7]*s2  + idiag[14]*s3 + idiag[21]*s4 + idiag[28]*s5 + idiag[35]*s6 + idiag[42]*s7;
9246d3beeddSMatthew Knepley         x[i2+1] = idiag[1]*s1 + idiag[8]*s2  + idiag[15]*s3 + idiag[22]*s4 + idiag[29]*s5 + idiag[36]*s6 + idiag[43]*s7;
9256d3beeddSMatthew Knepley         x[i2+2] = idiag[2]*s1 + idiag[9]*s2  + idiag[16]*s3 + idiag[23]*s4 + idiag[30]*s5 + idiag[37]*s6 + idiag[44]*s7;
9266d3beeddSMatthew Knepley         x[i2+3] = idiag[3]*s1 + idiag[10]*s2 + idiag[17]*s3 + idiag[24]*s4 + idiag[31]*s5 + idiag[38]*s6 + idiag[45]*s7;
9276d3beeddSMatthew Knepley         x[i2+4] = idiag[4]*s1 + idiag[11]*s2 + idiag[18]*s3 + idiag[25]*s4 + idiag[32]*s5 + idiag[39]*s6 + idiag[46]*s7;
9286d3beeddSMatthew Knepley         x[i2+5] = idiag[5]*s1 + idiag[12]*s2 + idiag[19]*s3 + idiag[26]*s4 + idiag[33]*s5 + idiag[40]*s6 + idiag[47]*s7;
9296d3beeddSMatthew Knepley         x[i2+6] = idiag[6]*s1 + idiag[13]*s2 + idiag[20]*s3 + idiag[27]*s4 + idiag[34]*s5 + idiag[41]*s6 + idiag[48]*s7;
9306d3beeddSMatthew Knepley         idiag   -= 49;
9316d3beeddSMatthew Knepley         i2      -= 7;
9326d3beeddSMatthew Knepley       }
9336d3beeddSMatthew Knepley       ierr = PetscLogFlops(49*(a->nz));CHKERRQ(ierr);
9346d3beeddSMatthew Knepley     }
9356d3beeddSMatthew Knepley   } else {
9366d3beeddSMatthew Knepley     SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess");
9376d3beeddSMatthew Knepley   }
9386d3beeddSMatthew Knepley   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
9396d3beeddSMatthew Knepley   ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
9406d3beeddSMatthew Knepley   PetscFunctionReturn(0);
9416d3beeddSMatthew Knepley }
9426d3beeddSMatthew Knepley 
943af674e45SBarry Smith /*
94481824310SBarry Smith     Special version for direct calls from Fortran (Used in PETSc-fun3d)
945af674e45SBarry Smith */
946af674e45SBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS)
947af674e45SBarry Smith #define matsetvaluesblocked4_ MATSETVALUESBLOCKED4
948af674e45SBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
949af674e45SBarry Smith #define matsetvaluesblocked4_ matsetvaluesblocked4
950af674e45SBarry Smith #endif
951af674e45SBarry Smith 
9529c8c1041SBarry Smith EXTERN_C_BEGIN
953af674e45SBarry Smith #undef __FUNCT__
954af674e45SBarry Smith #define __FUNCT__ "matsetvaluesblocked4_"
955be1d678aSKris Buschelman void PETSCMAT_DLLEXPORT matsetvaluesblocked4_(Mat *AA,PetscInt *mm,const PetscInt im[],PetscInt *nn,const PetscInt in[],const PetscScalar v[])
956af674e45SBarry Smith {
957af674e45SBarry Smith   Mat               A = *AA;
958af674e45SBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
959c1ac3661SBarry Smith   PetscInt          *rp,k,low,high,t,ii,jj,row,nrow,i,col,l,N,m = *mm,n = *nn;
960c1ac3661SBarry Smith   PetscInt          *ai=a->i,*ailen=a->ilen;
96117ec6a02SBarry Smith   PetscInt          *aj=a->j,stepval,lastcol = -1;
962f15d580aSBarry Smith   const PetscScalar *value = v;
9634bb09213Spetsc   MatScalar         *ap,*aa = a->a,*bap;
964af674e45SBarry Smith 
965af674e45SBarry Smith   PetscFunctionBegin;
9667adad957SLisandro Dalcin   if (A->rmap.bs != 4) SETERRABORT(((PetscObject)A)->comm,PETSC_ERR_ARG_WRONG,"Can only be called with a block size of 4");
967af674e45SBarry Smith   stepval = (n-1)*4;
968af674e45SBarry Smith   for (k=0; k<m; k++) { /* loop over added rows */
969af674e45SBarry Smith     row  = im[k];
970af674e45SBarry Smith     rp   = aj + ai[row];
971af674e45SBarry Smith     ap   = aa + 16*ai[row];
972af674e45SBarry Smith     nrow = ailen[row];
973af674e45SBarry Smith     low  = 0;
97417ec6a02SBarry Smith     high = nrow;
975af674e45SBarry Smith     for (l=0; l<n; l++) { /* loop over added columns */
976af674e45SBarry Smith       col = in[l];
97717ec6a02SBarry Smith       if (col <= lastcol) low = 0; else high = nrow;
97817ec6a02SBarry Smith       lastcol = col;
9791e3347e8SBarry Smith       value = v + k*(stepval+4 + l)*4;
980af674e45SBarry Smith       while (high-low > 7) {
981af674e45SBarry Smith         t = (low+high)/2;
982af674e45SBarry Smith         if (rp[t] > col) high = t;
983af674e45SBarry Smith         else             low  = t;
984af674e45SBarry Smith       }
985af674e45SBarry Smith       for (i=low; i<high; i++) {
986af674e45SBarry Smith         if (rp[i] > col) break;
987af674e45SBarry Smith         if (rp[i] == col) {
988af674e45SBarry Smith           bap  = ap +  16*i;
989af674e45SBarry Smith           for (ii=0; ii<4; ii++,value+=stepval) {
990af674e45SBarry Smith             for (jj=ii; jj<16; jj+=4) {
991af674e45SBarry Smith               bap[jj] += *value++;
992af674e45SBarry Smith             }
993af674e45SBarry Smith           }
994af674e45SBarry Smith           goto noinsert2;
995af674e45SBarry Smith         }
996af674e45SBarry Smith       }
997af674e45SBarry Smith       N = nrow++ - 1;
99817ec6a02SBarry Smith       high++; /* added new column index thus must search to one higher than before */
999af674e45SBarry Smith       /* shift up all the later entries in this row */
1000af674e45SBarry Smith       for (ii=N; ii>=i; ii--) {
1001af674e45SBarry Smith         rp[ii+1] = rp[ii];
1002a037b02bSBarry Smith         PetscMemcpy(ap+16*(ii+1),ap+16*(ii),16*sizeof(MatScalar));
1003af674e45SBarry Smith       }
1004af674e45SBarry Smith       if (N >= i) {
1005a037b02bSBarry Smith         PetscMemzero(ap+16*i,16*sizeof(MatScalar));
1006af674e45SBarry Smith       }
1007af674e45SBarry Smith       rp[i] = col;
1008af674e45SBarry Smith       bap   = ap +  16*i;
1009af674e45SBarry Smith       for (ii=0; ii<4; ii++,value+=stepval) {
1010af674e45SBarry Smith         for (jj=ii; jj<16; jj+=4) {
1011af674e45SBarry Smith           bap[jj] = *value++;
1012af674e45SBarry Smith         }
1013af674e45SBarry Smith       }
1014af674e45SBarry Smith       noinsert2:;
1015af674e45SBarry Smith       low = i;
1016af674e45SBarry Smith     }
1017af674e45SBarry Smith     ailen[row] = nrow;
1018af674e45SBarry Smith   }
1019be1d678aSKris Buschelman   PetscFunctionReturnVoid();
1020af674e45SBarry Smith }
10219c8c1041SBarry Smith EXTERN_C_END
1022af674e45SBarry Smith 
1023af674e45SBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS)
1024af674e45SBarry Smith #define matsetvalues4_ MATSETVALUES4
1025af674e45SBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
1026af674e45SBarry Smith #define matsetvalues4_ matsetvalues4
1027af674e45SBarry Smith #endif
1028af674e45SBarry Smith 
10299c8c1041SBarry Smith EXTERN_C_BEGIN
1030af674e45SBarry Smith #undef __FUNCT__
1031af674e45SBarry Smith #define __FUNCT__ "MatSetValues4_"
1032be1d678aSKris Buschelman void PETSCMAT_DLLEXPORT matsetvalues4_(Mat *AA,PetscInt *mm,PetscInt *im,PetscInt *nn,PetscInt *in,PetscScalar *v)
1033af674e45SBarry Smith {
1034af674e45SBarry Smith   Mat         A = *AA;
1035af674e45SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data;
1036c1ac3661SBarry Smith   PetscInt    *rp,k,low,high,t,ii,row,nrow,i,col,l,N,n = *nn,m = *mm;
1037c1ac3661SBarry Smith   PetscInt    *ai=a->i,*ailen=a->ilen;
1038c1ac3661SBarry Smith   PetscInt    *aj=a->j,brow,bcol;
103917ec6a02SBarry Smith   PetscInt    ridx,cidx,lastcol = -1;
1040af674e45SBarry Smith   MatScalar   *ap,value,*aa=a->a,*bap;
1041af674e45SBarry Smith 
1042af674e45SBarry Smith   PetscFunctionBegin;
1043af674e45SBarry Smith   for (k=0; k<m; k++) { /* loop over added rows */
1044af674e45SBarry Smith     row  = im[k]; brow = row/4;
1045af674e45SBarry Smith     rp   = aj + ai[brow];
1046af674e45SBarry Smith     ap   = aa + 16*ai[brow];
1047af674e45SBarry Smith     nrow = ailen[brow];
1048af674e45SBarry Smith     low  = 0;
104917ec6a02SBarry Smith     high = nrow;
1050af674e45SBarry Smith     for (l=0; l<n; l++) { /* loop over added columns */
1051af674e45SBarry Smith       col = in[l]; bcol = col/4;
1052af674e45SBarry Smith       ridx = row % 4; cidx = col % 4;
1053af674e45SBarry Smith       value = v[l + k*n];
105417ec6a02SBarry Smith       if (col <= lastcol) low = 0; else high = nrow;
105517ec6a02SBarry Smith       lastcol = col;
1056af674e45SBarry Smith       while (high-low > 7) {
1057af674e45SBarry Smith         t = (low+high)/2;
1058af674e45SBarry Smith         if (rp[t] > bcol) high = t;
1059af674e45SBarry Smith         else              low  = t;
1060af674e45SBarry Smith       }
1061af674e45SBarry Smith       for (i=low; i<high; i++) {
1062af674e45SBarry Smith         if (rp[i] > bcol) break;
1063af674e45SBarry Smith         if (rp[i] == bcol) {
1064af674e45SBarry Smith           bap  = ap +  16*i + 4*cidx + ridx;
1065af674e45SBarry Smith           *bap += value;
1066af674e45SBarry Smith           goto noinsert1;
1067af674e45SBarry Smith         }
1068af674e45SBarry Smith       }
1069af674e45SBarry Smith       N = nrow++ - 1;
107017ec6a02SBarry Smith       high++; /* added new column thus must search to one higher than before */
1071af674e45SBarry Smith       /* shift up all the later entries in this row */
1072af674e45SBarry Smith       for (ii=N; ii>=i; ii--) {
1073af674e45SBarry Smith         rp[ii+1] = rp[ii];
1074a037b02bSBarry Smith         PetscMemcpy(ap+16*(ii+1),ap+16*(ii),16*sizeof(MatScalar));
1075af674e45SBarry Smith       }
1076af674e45SBarry Smith       if (N>=i) {
1077a037b02bSBarry Smith         PetscMemzero(ap+16*i,16*sizeof(MatScalar));
1078af674e45SBarry Smith       }
1079af674e45SBarry Smith       rp[i]                    = bcol;
1080af674e45SBarry Smith       ap[16*i + 4*cidx + ridx] = value;
1081af674e45SBarry Smith       noinsert1:;
1082af674e45SBarry Smith       low = i;
1083af674e45SBarry Smith     }
1084af674e45SBarry Smith     ailen[brow] = nrow;
1085af674e45SBarry Smith   }
1086be1d678aSKris Buschelman   PetscFunctionReturnVoid();
1087af674e45SBarry Smith }
10889c8c1041SBarry Smith EXTERN_C_END
1089af674e45SBarry Smith 
1090be5855fcSBarry Smith /*
1091be5855fcSBarry Smith      Checks for missing diagonals
1092be5855fcSBarry Smith */
10934a2ae208SSatish Balay #undef __FUNCT__
10944a2ae208SSatish Balay #define __FUNCT__ "MatMissingDiagonal_SeqBAIJ"
10952af78befSBarry Smith PetscErrorCode MatMissingDiagonal_SeqBAIJ(Mat A,PetscTruth *missing,PetscInt *d)
1096be5855fcSBarry Smith {
1097be5855fcSBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
10986849ba73SBarry Smith   PetscErrorCode ierr;
1099c1ac3661SBarry Smith   PetscInt       *diag,*jj = a->j,i;
1100be5855fcSBarry Smith 
1101be5855fcSBarry Smith   PetscFunctionBegin;
1102c4992f7dSBarry Smith   ierr = MatMarkDiagonal_SeqBAIJ(A);CHKERRQ(ierr);
11032af78befSBarry Smith   *missing = PETSC_FALSE;
1104883fce79SBarry Smith   diag     = a->diag;
11050e8e8aceSBarry Smith   for (i=0; i<a->mbs; i++) {
1106be5855fcSBarry Smith     if (jj[diag[i]] != i) {
11072af78befSBarry Smith       *missing  = PETSC_TRUE;
11082af78befSBarry Smith       if (d) *d = i;
1109be5855fcSBarry Smith     }
1110be5855fcSBarry Smith   }
1111be5855fcSBarry Smith   PetscFunctionReturn(0);
1112be5855fcSBarry Smith }
1113be5855fcSBarry Smith 
11144a2ae208SSatish Balay #undef __FUNCT__
11154a2ae208SSatish Balay #define __FUNCT__ "MatMarkDiagonal_SeqBAIJ"
1116dfbe8321SBarry Smith PetscErrorCode MatMarkDiagonal_SeqBAIJ(Mat A)
1117de6a44a3SBarry Smith {
1118de6a44a3SBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
11196849ba73SBarry Smith   PetscErrorCode ierr;
112009f38230SBarry Smith   PetscInt       i,j,m = a->mbs;
1121de6a44a3SBarry Smith 
11223a40ed3dSBarry Smith   PetscFunctionBegin;
112309f38230SBarry Smith   if (!a->diag) {
112409f38230SBarry Smith     ierr = PetscMalloc(m*sizeof(PetscInt),&a->diag);CHKERRQ(ierr);
112509f38230SBarry Smith   }
11267fc0212eSBarry Smith   for (i=0; i<m; i++) {
112709f38230SBarry Smith     a->diag[i] = a->i[i+1];
1128de6a44a3SBarry Smith     for (j=a->i[i]; j<a->i[i+1]; j++) {
1129de6a44a3SBarry Smith       if (a->j[j] == i) {
113009f38230SBarry Smith         a->diag[i] = j;
1131de6a44a3SBarry Smith         break;
1132de6a44a3SBarry Smith       }
1133de6a44a3SBarry Smith     }
1134de6a44a3SBarry Smith   }
11353a40ed3dSBarry Smith   PetscFunctionReturn(0);
1136de6a44a3SBarry Smith }
11372593348eSBarry Smith 
11382593348eSBarry Smith 
1139690b6cddSBarry Smith EXTERN PetscErrorCode MatToSymmetricIJ_SeqAIJ(PetscInt,PetscInt*,PetscInt*,PetscInt,PetscInt,PetscInt**,PetscInt**);
11403b2fbd54SBarry Smith 
11414a2ae208SSatish Balay #undef __FUNCT__
11424a2ae208SSatish Balay #define __FUNCT__ "MatGetRowIJ_SeqBAIJ"
11438f7157efSSatish Balay static PetscErrorCode MatGetRowIJ_SeqBAIJ(Mat A,PetscInt oshift,PetscTruth symmetric,PetscTruth blockcompressed,PetscInt *nn,PetscInt *ia[],PetscInt *ja[],PetscTruth *done)
11443b2fbd54SBarry Smith {
11453b2fbd54SBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
1146dfbe8321SBarry Smith   PetscErrorCode ierr;
11479985e31cSBarry Smith   PetscInt       i,j,n = a->mbs,nz = a->i[n],bs = A->rmap.bs,nbs = 1,k,l,cnt;
11488f7157efSSatish Balay   PetscInt       *tia, *tja;
11493b2fbd54SBarry Smith 
11503a40ed3dSBarry Smith   PetscFunctionBegin;
11513b2fbd54SBarry Smith   *nn = n;
11523a40ed3dSBarry Smith   if (!ia) PetscFunctionReturn(0);
11533b2fbd54SBarry Smith   if (symmetric) {
11548f7157efSSatish Balay     ierr = MatToSymmetricIJ_SeqAIJ(n,a->i,a->j,0,0,&tia,&tja);CHKERRQ(ierr);
11553b2fbd54SBarry Smith   } else {
11568f7157efSSatish Balay     tia = a->i; tja = a->j;
11573b2fbd54SBarry Smith   }
11583b2fbd54SBarry Smith 
1159ecc77c7aSBarry Smith   if (!blockcompressed && bs > 1) {
1160ecc77c7aSBarry Smith     (*nn) *= bs;
1161ecc77c7aSBarry Smith     nbs    = bs;
11628f7157efSSatish Balay     /* malloc & create the natural set of indices */
1163ecc77c7aSBarry Smith     ierr = PetscMalloc((n+1)*bs*sizeof(PetscInt),ia);CHKERRQ(ierr);
11649985e31cSBarry Smith     if (n) {
1165ecc77c7aSBarry Smith       (*ia)[0] = 0;
1166ecc77c7aSBarry Smith       for (j=1; j<bs; j++) {
1167ecc77c7aSBarry Smith         (*ia)[j] = (tia[1]-tia[0])*bs+(*ia)[j-1];
1168ecc77c7aSBarry Smith       }
11699985e31cSBarry Smith     }
1170ecc77c7aSBarry Smith 
1171ecc77c7aSBarry Smith     for (i=1; i<n; i++) {
1172ecc77c7aSBarry Smith       (*ia)[i*bs] = (tia[i]-tia[i-1])*bs + (*ia)[i*bs-1];
1173ecc77c7aSBarry Smith       for (j=1; j<bs; j++) {
1174ecc77c7aSBarry Smith         (*ia)[i*bs+j] = (tia[i+1]-tia[i])*bs + (*ia)[i*bs+j-1];
11758f7157efSSatish Balay       }
11768f7157efSSatish Balay     }
11779985e31cSBarry Smith     if (n) {
1178ecc77c7aSBarry Smith       (*ia)[n*bs] = (tia[n]-tia[n-1])*bs + (*ia)[n*bs-1];
11799985e31cSBarry Smith     }
1180ecc77c7aSBarry Smith 
11819985e31cSBarry Smith     if (ja) {
11829985e31cSBarry Smith       ierr = PetscMalloc(nz*bs*bs*sizeof(PetscInt),ja);CHKERRQ(ierr);
11839985e31cSBarry Smith       cnt = 0;
11849985e31cSBarry Smith       for (i=0; i<n; i++) {
11859985e31cSBarry Smith         for (j=0; j<bs; j++) {
11869985e31cSBarry Smith           for (k=tia[i]; k<tia[i+1]; k++) {
11879985e31cSBarry Smith             for (l=0; l<bs; l++) {
11889985e31cSBarry Smith               (*ja)[cnt++] = bs*tja[k] + l;
11899985e31cSBarry Smith 	    }
11909985e31cSBarry Smith           }
11919985e31cSBarry Smith         }
11929985e31cSBarry Smith       }
11939985e31cSBarry Smith     }
11949985e31cSBarry Smith 
1195ecc77c7aSBarry Smith     n     *= bs;
1196ecc77c7aSBarry Smith     nz *= bs*bs;
11978f7157efSSatish Balay     if (symmetric) { /* deallocate memory allocated in MatToSymmetricIJ_SeqAIJ() */
11988f7157efSSatish Balay       ierr = PetscFree(tia);CHKERRQ(ierr);
11998f7157efSSatish Balay       ierr = PetscFree(tja);CHKERRQ(ierr);
12008f7157efSSatish Balay     }
12018f7157efSSatish Balay   } else {
12028f7157efSSatish Balay     *ia = tia;
1203ecc77c7aSBarry Smith     if (ja) *ja = tja;
12048f7157efSSatish Balay   }
12058f7157efSSatish Balay   if (oshift == 1) {
1206ecc77c7aSBarry Smith     for (i=0; i<n+nbs; i++) (*ia)[i]++;
1207ecc77c7aSBarry Smith     if (ja) for (i=0; i<nz; i++) (*ja)[i]++;
12088f7157efSSatish Balay   }
12093a40ed3dSBarry Smith   PetscFunctionReturn(0);
12103b2fbd54SBarry Smith }
12113b2fbd54SBarry Smith 
12124a2ae208SSatish Balay #undef __FUNCT__
12134a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRowIJ_SeqBAIJ"
12148f7157efSSatish Balay static PetscErrorCode MatRestoreRowIJ_SeqBAIJ(Mat A,PetscInt oshift,PetscTruth symmetric,PetscTruth blockcompressed,PetscInt *nn,PetscInt *ia[],PetscInt *ja[],PetscTruth *done)
12153b2fbd54SBarry Smith {
12163b2fbd54SBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
12176849ba73SBarry Smith   PetscErrorCode ierr;
12188f7157efSSatish Balay   PetscInt       i,n = a->mbs,nz = a->i[n];
12193b2fbd54SBarry Smith 
12203a40ed3dSBarry Smith   PetscFunctionBegin;
12213a40ed3dSBarry Smith   if (!ia) PetscFunctionReturn(0);
1222ecc77c7aSBarry Smith   if (!blockcompressed && A->rmap.bs > 1) {
1223ecc77c7aSBarry Smith     ierr = PetscFree(*ia);CHKERRQ(ierr);
12249985e31cSBarry Smith     if (ja) {ierr = PetscFree(*ja);CHKERRQ(ierr);}
12258f7157efSSatish Balay   } else if (symmetric) {
1226606d414cSSatish Balay     ierr = PetscFree(*ia);CHKERRQ(ierr);
12279985e31cSBarry Smith     if (ja) {ierr = PetscFree(*ja);CHKERRQ(ierr);}
12288f7157efSSatish Balay   } else if (oshift == 1) { /* blockcompressed */
12293b2fbd54SBarry Smith     for (i=0; i<n+1; i++) a->i[i]--;
12309985e31cSBarry Smith     if (ja) {for (i=0; i<nz; i++) a->j[i]--;}
12313b2fbd54SBarry Smith   }
12323a40ed3dSBarry Smith   PetscFunctionReturn(0);
12333b2fbd54SBarry Smith }
12343b2fbd54SBarry Smith 
12354a2ae208SSatish Balay #undef __FUNCT__
12364a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_SeqBAIJ"
1237dfbe8321SBarry Smith PetscErrorCode MatDestroy_SeqBAIJ(Mat A)
12382d61bbb3SSatish Balay {
12392d61bbb3SSatish Balay   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
1240dfbe8321SBarry Smith   PetscErrorCode ierr;
12412d61bbb3SSatish Balay 
1242433994e6SBarry Smith   PetscFunctionBegin;
1243aa482453SBarry Smith #if defined(PETSC_USE_LOG)
1244899cda47SBarry Smith   PetscLogObjectState((PetscObject)A,"Rows=%D, Cols=%D, NZ=%D",A->rmap.N,A->cmap.n,a->nz);
12452d61bbb3SSatish Balay #endif
1246e6b907acSBarry Smith   ierr = MatSeqXAIJFreeAIJ(A,&a->a,&a->j,&a->i);CHKERRQ(ierr);
1247c38d4ed2SBarry Smith   if (a->row) {
1248c38d4ed2SBarry Smith     ierr = ISDestroy(a->row);CHKERRQ(ierr);
1249c38d4ed2SBarry Smith   }
1250c38d4ed2SBarry Smith   if (a->col) {
1251c38d4ed2SBarry Smith     ierr = ISDestroy(a->col);CHKERRQ(ierr);
1252c38d4ed2SBarry Smith   }
125305b42c5fSBarry Smith   ierr = PetscFree(a->diag);CHKERRQ(ierr);
125405b42c5fSBarry Smith   ierr = PetscFree(a->idiag);CHKERRQ(ierr);
125505b42c5fSBarry Smith   ierr = PetscFree2(a->imax,a->ilen);CHKERRQ(ierr);
125605b42c5fSBarry Smith   ierr = PetscFree(a->solve_work);CHKERRQ(ierr);
125705b42c5fSBarry Smith   ierr = PetscFree(a->mult_work);CHKERRQ(ierr);
1258e51c0b9cSSatish Balay   if (a->icol) {ierr = ISDestroy(a->icol);CHKERRQ(ierr);}
125905b42c5fSBarry Smith   ierr = PetscFree(a->saved_values);CHKERRQ(ierr);
126005b42c5fSBarry Smith   ierr = PetscFree(a->xtoy);CHKERRQ(ierr);
126173e7a558SHong Zhang   if (a->compressedrow.use){ierr = PetscFree(a->compressedrow.i);}
1262c4319e64SHong Zhang 
1263606d414cSSatish Balay   ierr = PetscFree(a);CHKERRQ(ierr);
1264901853e0SKris Buschelman 
1265dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)A,0);CHKERRQ(ierr);
126643516a2dSKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqBAIJInvertBlockDiagonal_C","",PETSC_NULL);CHKERRQ(ierr);
1267901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)A,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr);
1268901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)A,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr);
1269901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqBAIJSetColumnIndices_C","",PETSC_NULL);CHKERRQ(ierr);
1270901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqbaij_seqaij_C","",PETSC_NULL);CHKERRQ(ierr);
1271901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqbaij_seqsbaij_C","",PETSC_NULL);CHKERRQ(ierr);
1272901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
1273725b52f3SLisandro Dalcin   ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqBAIJSetPreallocationCSR_C","",PETSC_NULL);CHKERRQ(ierr);
12742d61bbb3SSatish Balay   PetscFunctionReturn(0);
12752d61bbb3SSatish Balay }
12762d61bbb3SSatish Balay 
12774a2ae208SSatish Balay #undef __FUNCT__
12784a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_SeqBAIJ"
12794e0d8c25SBarry Smith PetscErrorCode MatSetOption_SeqBAIJ(Mat A,MatOption op,PetscTruth flg)
12802d61bbb3SSatish Balay {
12812d61bbb3SSatish Balay   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
128263ba0a88SBarry Smith   PetscErrorCode ierr;
12832d61bbb3SSatish Balay 
12842d61bbb3SSatish Balay   PetscFunctionBegin;
1285aa275fccSKris Buschelman   switch (op) {
1286aa275fccSKris Buschelman   case MAT_ROW_ORIENTED:
12874e0d8c25SBarry Smith     a->roworiented    = flg;
1288aa275fccSKris Buschelman     break;
1289aa275fccSKris Buschelman   case MAT_KEEP_ZEROED_ROWS:
12904e0d8c25SBarry Smith     a->keepzeroedrows = flg;
1291aa275fccSKris Buschelman     break;
1292512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1293512a5fc5SBarry Smith     a->nonew          = (flg ? 0 : 1);
1294aa275fccSKris Buschelman     break;
1295aa275fccSKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
12964e0d8c25SBarry Smith     a->nonew          = (flg ? -1 : 0);
1297aa275fccSKris Buschelman     break;
1298aa275fccSKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
12994e0d8c25SBarry Smith     a->nonew          = (flg ? -2 : 0);
1300aa275fccSKris Buschelman     break;
13014e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1302aa275fccSKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
1303aa275fccSKris Buschelman   case MAT_USE_HASH_TABLE:
1304290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
1305aa275fccSKris Buschelman     break;
130677e54ba9SKris Buschelman   case MAT_SYMMETRIC:
130777e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
13089a4540c5SBarry Smith   case MAT_HERMITIAN:
13099a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1310290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
131177e54ba9SKris Buschelman     break;
1312aa275fccSKris Buschelman   default:
1313ad86a440SBarry Smith     SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op);
13142d61bbb3SSatish Balay   }
13152d61bbb3SSatish Balay   PetscFunctionReturn(0);
13162d61bbb3SSatish Balay }
13172d61bbb3SSatish Balay 
13184a2ae208SSatish Balay #undef __FUNCT__
13194a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_SeqBAIJ"
1320c1ac3661SBarry Smith PetscErrorCode MatGetRow_SeqBAIJ(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
13212d61bbb3SSatish Balay {
13222d61bbb3SSatish Balay   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
13236849ba73SBarry Smith   PetscErrorCode ierr;
1324c1ac3661SBarry Smith   PetscInt       itmp,i,j,k,M,*ai,*aj,bs,bn,bp,*idx_i,bs2;
13253f1db9ecSBarry Smith   MatScalar      *aa,*aa_i;
132687828ca2SBarry Smith   PetscScalar    *v_i;
13272d61bbb3SSatish Balay 
13282d61bbb3SSatish Balay   PetscFunctionBegin;
1329899cda47SBarry Smith   bs  = A->rmap.bs;
13302d61bbb3SSatish Balay   ai  = a->i;
13312d61bbb3SSatish Balay   aj  = a->j;
13322d61bbb3SSatish Balay   aa  = a->a;
13332d61bbb3SSatish Balay   bs2 = a->bs2;
13342d61bbb3SSatish Balay 
1335899cda47SBarry Smith   if (row < 0 || row >= A->rmap.N) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Row %D out of range", row);
13362d61bbb3SSatish Balay 
13372d61bbb3SSatish Balay   bn  = row/bs;   /* Block number */
13382d61bbb3SSatish Balay   bp  = row % bs; /* Block Position */
13392d61bbb3SSatish Balay   M   = ai[bn+1] - ai[bn];
13402d61bbb3SSatish Balay   *nz = bs*M;
13412d61bbb3SSatish Balay 
13422d61bbb3SSatish Balay   if (v) {
13432d61bbb3SSatish Balay     *v = 0;
13442d61bbb3SSatish Balay     if (*nz) {
134587828ca2SBarry Smith       ierr = PetscMalloc((*nz)*sizeof(PetscScalar),v);CHKERRQ(ierr);
13462d61bbb3SSatish Balay       for (i=0; i<M; i++) { /* for each block in the block row */
13472d61bbb3SSatish Balay         v_i  = *v + i*bs;
13482d61bbb3SSatish Balay         aa_i = aa + bs2*(ai[bn] + i);
13492d61bbb3SSatish Balay         for (j=bp,k=0; j<bs2; j+=bs,k++) {v_i[k] = aa_i[j];}
13502d61bbb3SSatish Balay       }
13512d61bbb3SSatish Balay     }
13522d61bbb3SSatish Balay   }
13532d61bbb3SSatish Balay 
13542d61bbb3SSatish Balay   if (idx) {
13552d61bbb3SSatish Balay     *idx = 0;
13562d61bbb3SSatish Balay     if (*nz) {
1357c1ac3661SBarry Smith       ierr = PetscMalloc((*nz)*sizeof(PetscInt),idx);CHKERRQ(ierr);
13582d61bbb3SSatish Balay       for (i=0; i<M; i++) { /* for each block in the block row */
13592d61bbb3SSatish Balay         idx_i = *idx + i*bs;
13602d61bbb3SSatish Balay         itmp  = bs*aj[ai[bn] + i];
13612d61bbb3SSatish Balay         for (j=0; j<bs; j++) {idx_i[j] = itmp++;}
13622d61bbb3SSatish Balay       }
13632d61bbb3SSatish Balay     }
13642d61bbb3SSatish Balay   }
13652d61bbb3SSatish Balay   PetscFunctionReturn(0);
13662d61bbb3SSatish Balay }
13672d61bbb3SSatish Balay 
13684a2ae208SSatish Balay #undef __FUNCT__
13694a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_SeqBAIJ"
1370c1ac3661SBarry Smith PetscErrorCode MatRestoreRow_SeqBAIJ(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
13712d61bbb3SSatish Balay {
1372dfbe8321SBarry Smith   PetscErrorCode ierr;
1373606d414cSSatish Balay 
13742d61bbb3SSatish Balay   PetscFunctionBegin;
137505b42c5fSBarry Smith   if (idx) {ierr = PetscFree(*idx);CHKERRQ(ierr);}
137605b42c5fSBarry Smith   if (v)   {ierr = PetscFree(*v);CHKERRQ(ierr);}
13772d61bbb3SSatish Balay   PetscFunctionReturn(0);
13782d61bbb3SSatish Balay }
13792d61bbb3SSatish Balay 
13804a2ae208SSatish Balay #undef __FUNCT__
13814a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_SeqBAIJ"
1382fc4dec0aSBarry Smith PetscErrorCode MatTranspose_SeqBAIJ(Mat A,MatReuse reuse,Mat *B)
13832d61bbb3SSatish Balay {
13842d61bbb3SSatish Balay   Mat_SeqBAIJ    *a=(Mat_SeqBAIJ *)A->data;
13852d61bbb3SSatish Balay   Mat            C;
13866849ba73SBarry Smith   PetscErrorCode ierr;
1387899cda47SBarry Smith   PetscInt       i,j,k,*aj=a->j,*ai=a->i,bs=A->rmap.bs,mbs=a->mbs,nbs=a->nbs,len,*col;
1388c1ac3661SBarry Smith   PetscInt       *rows,*cols,bs2=a->bs2;
1389dd6ea824SBarry Smith   MatScalar      *array;
13902d61bbb3SSatish Balay 
13912d61bbb3SSatish Balay   PetscFunctionBegin;
1392e9695a30SBarry Smith   if (reuse == MAT_REUSE_MATRIX && A == *B && mbs != nbs) SETERRQ(PETSC_ERR_ARG_SIZ,"Square matrix only for in-place");
1393fc4dec0aSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || A == *B) {
1394c1ac3661SBarry Smith     ierr = PetscMalloc((1+nbs)*sizeof(PetscInt),&col);CHKERRQ(ierr);
1395c1ac3661SBarry Smith     ierr = PetscMemzero(col,(1+nbs)*sizeof(PetscInt));CHKERRQ(ierr);
13962d61bbb3SSatish Balay 
13972d61bbb3SSatish Balay     for (i=0; i<ai[mbs]; i++) col[aj[i]] += 1;
13987adad957SLisandro Dalcin     ierr = MatCreate(((PetscObject)A)->comm,&C);CHKERRQ(ierr);
1399899cda47SBarry Smith     ierr = MatSetSizes(C,A->cmap.n,A->rmap.N,A->cmap.n,A->rmap.N);CHKERRQ(ierr);
14007adad957SLisandro Dalcin     ierr = MatSetType(C,((PetscObject)A)->type_name);CHKERRQ(ierr);
1401ab93d7beSBarry Smith     ierr = MatSeqBAIJSetPreallocation_SeqBAIJ(C,bs,PETSC_NULL,col);CHKERRQ(ierr);
1402606d414cSSatish Balay     ierr = PetscFree(col);CHKERRQ(ierr);
1403fc4dec0aSBarry Smith   } else {
1404fc4dec0aSBarry Smith     C = *B;
1405fc4dec0aSBarry Smith   }
1406fc4dec0aSBarry Smith 
1407fc4dec0aSBarry Smith   array = a->a;
1408c1ac3661SBarry Smith   ierr = PetscMalloc(2*bs*sizeof(PetscInt),&rows);CHKERRQ(ierr);
14092d61bbb3SSatish Balay   cols = rows + bs;
14102d61bbb3SSatish Balay   for (i=0; i<mbs; i++) {
14112d61bbb3SSatish Balay     cols[0] = i*bs;
14122d61bbb3SSatish Balay     for (k=1; k<bs; k++) cols[k] = cols[k-1] + 1;
14132d61bbb3SSatish Balay     len = ai[i+1] - ai[i];
14142d61bbb3SSatish Balay     for (j=0; j<len; j++) {
14152d61bbb3SSatish Balay       rows[0] = (*aj++)*bs;
14162d61bbb3SSatish Balay       for (k=1; k<bs; k++) rows[k] = rows[k-1] + 1;
14172d61bbb3SSatish Balay       ierr = MatSetValues(C,bs,rows,bs,cols,array,INSERT_VALUES);CHKERRQ(ierr);
14182d61bbb3SSatish Balay       array += bs2;
14192d61bbb3SSatish Balay     }
14202d61bbb3SSatish Balay   }
1421606d414cSSatish Balay   ierr = PetscFree(rows);CHKERRQ(ierr);
14222d61bbb3SSatish Balay 
14232d61bbb3SSatish Balay   ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
14242d61bbb3SSatish Balay   ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
14252d61bbb3SSatish Balay 
1426815cbec1SBarry Smith   if (reuse == MAT_INITIAL_MATRIX || *B != A) {
14272d61bbb3SSatish Balay     *B = C;
14282d61bbb3SSatish Balay   } else {
1429273d9f13SBarry Smith     ierr = MatHeaderCopy(A,C);CHKERRQ(ierr);
14302d61bbb3SSatish Balay   }
14312d61bbb3SSatish Balay   PetscFunctionReturn(0);
14322d61bbb3SSatish Balay }
14332d61bbb3SSatish Balay 
14344a2ae208SSatish Balay #undef __FUNCT__
14354a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqBAIJ_Binary"
14366849ba73SBarry Smith static PetscErrorCode MatView_SeqBAIJ_Binary(Mat A,PetscViewer viewer)
14372593348eSBarry Smith {
1438b6490206SBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
14396849ba73SBarry Smith   PetscErrorCode ierr;
1440899cda47SBarry Smith   PetscInt       i,*col_lens,bs = A->rmap.bs,count,*jj,j,k,l,bs2=a->bs2;
1441b24ad042SBarry Smith   int            fd;
144287828ca2SBarry Smith   PetscScalar    *aa;
1443ce6f0cecSBarry Smith   FILE           *file;
14442593348eSBarry Smith 
14453a40ed3dSBarry Smith   PetscFunctionBegin;
1446b0a32e0cSBarry Smith   ierr        = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
1447899cda47SBarry Smith   ierr        = PetscMalloc((4+A->rmap.N)*sizeof(PetscInt),&col_lens);CHKERRQ(ierr);
1448552e946dSBarry Smith   col_lens[0] = MAT_FILE_COOKIE;
14493b2fbd54SBarry Smith 
1450899cda47SBarry Smith   col_lens[1] = A->rmap.N;
1451899cda47SBarry Smith   col_lens[2] = A->cmap.n;
14527e67e3f9SSatish Balay   col_lens[3] = a->nz*bs2;
14532593348eSBarry Smith 
14542593348eSBarry Smith   /* store lengths of each row and write (including header) to file */
1455b6490206SBarry Smith   count = 0;
1456b6490206SBarry Smith   for (i=0; i<a->mbs; i++) {
1457b6490206SBarry Smith     for (j=0; j<bs; j++) {
1458b6490206SBarry Smith       col_lens[4+count++] = bs*(a->i[i+1] - a->i[i]);
1459b6490206SBarry Smith     }
14602593348eSBarry Smith   }
1461899cda47SBarry Smith   ierr = PetscBinaryWrite(fd,col_lens,4+A->rmap.N,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1462606d414cSSatish Balay   ierr = PetscFree(col_lens);CHKERRQ(ierr);
14632593348eSBarry Smith 
14642593348eSBarry Smith   /* store column indices (zero start index) */
1465c1ac3661SBarry Smith   ierr  = PetscMalloc((a->nz+1)*bs2*sizeof(PetscInt),&jj);CHKERRQ(ierr);
1466b6490206SBarry Smith   count = 0;
1467b6490206SBarry Smith   for (i=0; i<a->mbs; i++) {
1468b6490206SBarry Smith     for (j=0; j<bs; j++) {
1469b6490206SBarry Smith       for (k=a->i[i]; k<a->i[i+1]; k++) {
1470b6490206SBarry Smith         for (l=0; l<bs; l++) {
1471b6490206SBarry Smith           jj[count++] = bs*a->j[k] + l;
14722593348eSBarry Smith         }
14732593348eSBarry Smith       }
1474b6490206SBarry Smith     }
1475b6490206SBarry Smith   }
14766f69ff64SBarry Smith   ierr = PetscBinaryWrite(fd,jj,bs2*a->nz,PETSC_INT,PETSC_FALSE);CHKERRQ(ierr);
1477606d414cSSatish Balay   ierr = PetscFree(jj);CHKERRQ(ierr);
14782593348eSBarry Smith 
14792593348eSBarry Smith   /* store nonzero values */
148087828ca2SBarry Smith   ierr  = PetscMalloc((a->nz+1)*bs2*sizeof(PetscScalar),&aa);CHKERRQ(ierr);
1481b6490206SBarry Smith   count = 0;
1482b6490206SBarry Smith   for (i=0; i<a->mbs; i++) {
1483b6490206SBarry Smith     for (j=0; j<bs; j++) {
1484b6490206SBarry Smith       for (k=a->i[i]; k<a->i[i+1]; k++) {
1485b6490206SBarry Smith         for (l=0; l<bs; l++) {
14867e67e3f9SSatish Balay           aa[count++] = a->a[bs2*k + l*bs + j];
1487b6490206SBarry Smith         }
1488b6490206SBarry Smith       }
1489b6490206SBarry Smith     }
1490b6490206SBarry Smith   }
14916f69ff64SBarry Smith   ierr = PetscBinaryWrite(fd,aa,bs2*a->nz,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr);
1492606d414cSSatish Balay   ierr = PetscFree(aa);CHKERRQ(ierr);
1493ce6f0cecSBarry Smith 
1494b0a32e0cSBarry Smith   ierr = PetscViewerBinaryGetInfoPointer(viewer,&file);CHKERRQ(ierr);
1495ce6f0cecSBarry Smith   if (file) {
1496899cda47SBarry Smith     fprintf(file,"-matload_block_size %d\n",(int)A->rmap.bs);
1497ce6f0cecSBarry Smith   }
14983a40ed3dSBarry Smith   PetscFunctionReturn(0);
14992593348eSBarry Smith }
15002593348eSBarry Smith 
15014a2ae208SSatish Balay #undef __FUNCT__
15024a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqBAIJ_ASCII"
15036849ba73SBarry Smith static PetscErrorCode MatView_SeqBAIJ_ASCII(Mat A,PetscViewer viewer)
15042593348eSBarry Smith {
1505b6490206SBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
1506dfbe8321SBarry Smith   PetscErrorCode    ierr;
1507899cda47SBarry Smith   PetscInt          i,j,bs = A->rmap.bs,k,l,bs2=a->bs2;
1508f3ef73ceSBarry Smith   PetscViewerFormat format;
15092593348eSBarry Smith 
15103a40ed3dSBarry Smith   PetscFunctionBegin;
1511b0a32e0cSBarry Smith   ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
1512456192e2SBarry Smith   if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
151377431f27SBarry Smith     ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
1514fb9695e5SSatish Balay   } else if (format == PETSC_VIEWER_ASCII_MATLAB) {
1515bcd9e38bSBarry Smith     Mat aij;
1516ceb03754SKris Buschelman     ierr = MatConvert(A,MATSEQAIJ,MAT_INITIAL_MATRIX,&aij);CHKERRQ(ierr);
1517bcd9e38bSBarry Smith     ierr = MatView(aij,viewer);CHKERRQ(ierr);
1518bcd9e38bSBarry Smith     ierr = MatDestroy(aij);CHKERRQ(ierr);
151904929863SHong Zhang   } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
152004929863SHong Zhang      PetscFunctionReturn(0);
1521fb9695e5SSatish Balay   } else if (format == PETSC_VIEWER_ASCII_COMMON) {
1522b0a32e0cSBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_NO);CHKERRQ(ierr);
152344cd7ae7SLois Curfman McInnes     for (i=0; i<a->mbs; i++) {
152444cd7ae7SLois Curfman McInnes       for (j=0; j<bs; j++) {
152577431f27SBarry Smith         ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i*bs+j);CHKERRQ(ierr);
152644cd7ae7SLois Curfman McInnes         for (k=a->i[i]; k<a->i[i+1]; k++) {
152744cd7ae7SLois Curfman McInnes           for (l=0; l<bs; l++) {
1528aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
15290e6d2581SBarry Smith             if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) > 0.0 && PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) {
1530a83599f4SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %G + %Gi) ",bs*a->j[k]+l,
15310e6d2581SBarry Smith                       PetscRealPart(a->a[bs2*k + l*bs + j]),PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
15320e6d2581SBarry Smith             } else if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) < 0.0 && PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) {
1533a83599f4SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %G - %Gi) ",bs*a->j[k]+l,
15340e6d2581SBarry Smith                       PetscRealPart(a->a[bs2*k + l*bs + j]),-PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
15350e6d2581SBarry Smith             } else if (PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) {
1536a83599f4SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %G) ",bs*a->j[k]+l,PetscRealPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
15370ef38995SBarry Smith             }
153844cd7ae7SLois Curfman McInnes #else
15390ef38995SBarry Smith             if (a->a[bs2*k + l*bs + j] != 0.0) {
1540a83599f4SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %G) ",bs*a->j[k]+l,a->a[bs2*k + l*bs + j]);CHKERRQ(ierr);
15410ef38995SBarry Smith             }
154244cd7ae7SLois Curfman McInnes #endif
154344cd7ae7SLois Curfman McInnes           }
154444cd7ae7SLois Curfman McInnes         }
1545b0a32e0cSBarry Smith         ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
154644cd7ae7SLois Curfman McInnes       }
154744cd7ae7SLois Curfman McInnes     }
1548b0a32e0cSBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_YES);CHKERRQ(ierr);
15490ef38995SBarry Smith   } else {
1550b0a32e0cSBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_NO);CHKERRQ(ierr);
1551b6490206SBarry Smith     for (i=0; i<a->mbs; i++) {
1552b6490206SBarry Smith       for (j=0; j<bs; j++) {
155377431f27SBarry Smith         ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i*bs+j);CHKERRQ(ierr);
1554b6490206SBarry Smith         for (k=a->i[i]; k<a->i[i+1]; k++) {
1555b6490206SBarry Smith           for (l=0; l<bs; l++) {
1556aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
15570e6d2581SBarry Smith             if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) > 0.0) {
1558a83599f4SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %G + %G i) ",bs*a->j[k]+l,
15590e6d2581SBarry Smith                 PetscRealPart(a->a[bs2*k + l*bs + j]),PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
15600e6d2581SBarry Smith             } else if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) < 0.0) {
1561a83599f4SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %G - %G i) ",bs*a->j[k]+l,
15620e6d2581SBarry Smith                 PetscRealPart(a->a[bs2*k + l*bs + j]),-PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
15630ef38995SBarry Smith             } else {
1564a83599f4SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %G) ",bs*a->j[k]+l,PetscRealPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
156588685aaeSLois Curfman McInnes             }
156688685aaeSLois Curfman McInnes #else
1567a83599f4SBarry Smith             ierr = PetscViewerASCIIPrintf(viewer," (%D, %G) ",bs*a->j[k]+l,a->a[bs2*k + l*bs + j]);CHKERRQ(ierr);
156888685aaeSLois Curfman McInnes #endif
15692593348eSBarry Smith           }
15702593348eSBarry Smith         }
1571b0a32e0cSBarry Smith         ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
15722593348eSBarry Smith       }
15732593348eSBarry Smith     }
1574b0a32e0cSBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_YES);CHKERRQ(ierr);
1575b6490206SBarry Smith   }
1576b0a32e0cSBarry Smith   ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
15773a40ed3dSBarry Smith   PetscFunctionReturn(0);
15782593348eSBarry Smith }
15792593348eSBarry Smith 
15804a2ae208SSatish Balay #undef __FUNCT__
15814a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqBAIJ_Draw_Zoom"
15826849ba73SBarry Smith static PetscErrorCode MatView_SeqBAIJ_Draw_Zoom(PetscDraw draw,void *Aa)
15833270192aSSatish Balay {
158477ed5343SBarry Smith   Mat            A = (Mat) Aa;
15853270192aSSatish Balay   Mat_SeqBAIJ    *a=(Mat_SeqBAIJ*)A->data;
15866849ba73SBarry Smith   PetscErrorCode ierr;
1587899cda47SBarry Smith   PetscInt       row,i,j,k,l,mbs=a->mbs,color,bs=A->rmap.bs,bs2=a->bs2;
15880e6d2581SBarry Smith   PetscReal      xl,yl,xr,yr,x_l,x_r,y_l,y_r;
15893f1db9ecSBarry Smith   MatScalar      *aa;
1590b0a32e0cSBarry Smith   PetscViewer    viewer;
15913270192aSSatish Balay 
15923a40ed3dSBarry Smith   PetscFunctionBegin;
15933270192aSSatish Balay 
1594b65db4caSBarry Smith   /* still need to add support for contour plot of nonzeros; see MatView_SeqAIJ_Draw_Zoom()*/
159577ed5343SBarry Smith   ierr = PetscObjectQuery((PetscObject)A,"Zoomviewer",(PetscObject*)&viewer);CHKERRQ(ierr);
159677ed5343SBarry Smith 
1597b0a32e0cSBarry Smith   ierr = PetscDrawGetCoordinates(draw,&xl,&yl,&xr,&yr);CHKERRQ(ierr);
159877ed5343SBarry Smith 
15993270192aSSatish Balay   /* loop over matrix elements drawing boxes */
1600b0a32e0cSBarry Smith   color = PETSC_DRAW_BLUE;
16013270192aSSatish Balay   for (i=0,row=0; i<mbs; i++,row+=bs) {
16023270192aSSatish Balay     for (j=a->i[i]; j<a->i[i+1]; j++) {
1603899cda47SBarry Smith       y_l = A->rmap.N - row - 1.0; y_r = y_l + 1.0;
16043270192aSSatish Balay       x_l = a->j[j]*bs; x_r = x_l + 1.0;
16053270192aSSatish Balay       aa = a->a + j*bs2;
16063270192aSSatish Balay       for (k=0; k<bs; k++) {
16073270192aSSatish Balay         for (l=0; l<bs; l++) {
16080e6d2581SBarry Smith           if (PetscRealPart(*aa++) >=  0.) continue;
1609b0a32e0cSBarry Smith           ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr);
16103270192aSSatish Balay         }
16113270192aSSatish Balay       }
16123270192aSSatish Balay     }
16133270192aSSatish Balay   }
1614b0a32e0cSBarry Smith   color = PETSC_DRAW_CYAN;
16153270192aSSatish Balay   for (i=0,row=0; i<mbs; i++,row+=bs) {
16163270192aSSatish Balay     for (j=a->i[i]; j<a->i[i+1]; j++) {
1617899cda47SBarry Smith       y_l = A->rmap.N - row - 1.0; y_r = y_l + 1.0;
16183270192aSSatish Balay       x_l = a->j[j]*bs; x_r = x_l + 1.0;
16193270192aSSatish Balay       aa = a->a + j*bs2;
16203270192aSSatish Balay       for (k=0; k<bs; k++) {
16213270192aSSatish Balay         for (l=0; l<bs; l++) {
16220e6d2581SBarry Smith           if (PetscRealPart(*aa++) != 0.) continue;
1623b0a32e0cSBarry Smith           ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr);
16243270192aSSatish Balay         }
16253270192aSSatish Balay       }
16263270192aSSatish Balay     }
16273270192aSSatish Balay   }
16283270192aSSatish Balay 
1629b0a32e0cSBarry Smith   color = PETSC_DRAW_RED;
16303270192aSSatish Balay   for (i=0,row=0; i<mbs; i++,row+=bs) {
16313270192aSSatish Balay     for (j=a->i[i]; j<a->i[i+1]; j++) {
1632899cda47SBarry Smith       y_l = A->rmap.N - row - 1.0; y_r = y_l + 1.0;
16333270192aSSatish Balay       x_l = a->j[j]*bs; x_r = x_l + 1.0;
16343270192aSSatish Balay       aa = a->a + j*bs2;
16353270192aSSatish Balay       for (k=0; k<bs; k++) {
16363270192aSSatish Balay         for (l=0; l<bs; l++) {
16370e6d2581SBarry Smith           if (PetscRealPart(*aa++) <= 0.) continue;
1638b0a32e0cSBarry Smith           ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr);
16393270192aSSatish Balay         }
16403270192aSSatish Balay       }
16413270192aSSatish Balay     }
16423270192aSSatish Balay   }
164377ed5343SBarry Smith   PetscFunctionReturn(0);
164477ed5343SBarry Smith }
16453270192aSSatish Balay 
16464a2ae208SSatish Balay #undef __FUNCT__
16474a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqBAIJ_Draw"
16486849ba73SBarry Smith static PetscErrorCode MatView_SeqBAIJ_Draw(Mat A,PetscViewer viewer)
164977ed5343SBarry Smith {
1650dfbe8321SBarry Smith   PetscErrorCode ierr;
16510e6d2581SBarry Smith   PetscReal      xl,yl,xr,yr,w,h;
1652b0a32e0cSBarry Smith   PetscDraw      draw;
165377ed5343SBarry Smith   PetscTruth     isnull;
16543270192aSSatish Balay 
165577ed5343SBarry Smith   PetscFunctionBegin;
165677ed5343SBarry Smith 
1657b0a32e0cSBarry Smith   ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
1658b0a32e0cSBarry Smith   ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
165977ed5343SBarry Smith 
166077ed5343SBarry Smith   ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",(PetscObject)viewer);CHKERRQ(ierr);
1661899cda47SBarry Smith   xr  = A->cmap.n; yr = A->rmap.N; h = yr/10.0; w = xr/10.0;
166277ed5343SBarry Smith   xr += w;    yr += h;  xl = -w;     yl = -h;
1663b0a32e0cSBarry Smith   ierr = PetscDrawSetCoordinates(draw,xl,yl,xr,yr);CHKERRQ(ierr);
1664b0a32e0cSBarry Smith   ierr = PetscDrawZoom(draw,MatView_SeqBAIJ_Draw_Zoom,A);CHKERRQ(ierr);
166577ed5343SBarry Smith   ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",PETSC_NULL);CHKERRQ(ierr);
16663a40ed3dSBarry Smith   PetscFunctionReturn(0);
16673270192aSSatish Balay }
16683270192aSSatish Balay 
16694a2ae208SSatish Balay #undef __FUNCT__
16704a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqBAIJ"
1671dfbe8321SBarry Smith PetscErrorCode MatView_SeqBAIJ(Mat A,PetscViewer viewer)
16722593348eSBarry Smith {
1673dfbe8321SBarry Smith   PetscErrorCode ierr;
167432077d6dSBarry Smith   PetscTruth     iascii,isbinary,isdraw;
16752593348eSBarry Smith 
16763a40ed3dSBarry Smith   PetscFunctionBegin;
167732077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
1678fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
1679fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
168032077d6dSBarry Smith   if (iascii){
16813a40ed3dSBarry Smith     ierr = MatView_SeqBAIJ_ASCII(A,viewer);CHKERRQ(ierr);
16820f5bd95cSBarry Smith   } else if (isbinary) {
16833a40ed3dSBarry Smith     ierr = MatView_SeqBAIJ_Binary(A,viewer);CHKERRQ(ierr);
16840f5bd95cSBarry Smith   } else if (isdraw) {
16853a40ed3dSBarry Smith     ierr = MatView_SeqBAIJ_Draw(A,viewer);CHKERRQ(ierr);
16865cd90555SBarry Smith   } else {
1687a5e6ed63SBarry Smith     Mat B;
1688ceb03754SKris Buschelman     ierr = MatConvert(A,MATSEQAIJ,MAT_INITIAL_MATRIX,&B);CHKERRQ(ierr);
1689a5e6ed63SBarry Smith     ierr = MatView(B,viewer);CHKERRQ(ierr);
1690a5e6ed63SBarry Smith     ierr = MatDestroy(B);CHKERRQ(ierr);
16912593348eSBarry Smith   }
16923a40ed3dSBarry Smith   PetscFunctionReturn(0);
16932593348eSBarry Smith }
1694b6490206SBarry Smith 
1695cd0e1443SSatish Balay 
16964a2ae208SSatish Balay #undef __FUNCT__
16974a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_SeqBAIJ"
1698c1ac3661SBarry Smith PetscErrorCode MatGetValues_SeqBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],PetscScalar v[])
1699cd0e1443SSatish Balay {
1700cd0e1443SSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data;
1701c1ac3661SBarry Smith   PetscInt    *rp,k,low,high,t,row,nrow,i,col,l,*aj = a->j;
1702c1ac3661SBarry Smith   PetscInt    *ai = a->i,*ailen = a->ilen;
1703899cda47SBarry Smith   PetscInt    brow,bcol,ridx,cidx,bs=A->rmap.bs,bs2=a->bs2;
170497e567efSBarry Smith   MatScalar   *ap,*aa = a->a;
1705cd0e1443SSatish Balay 
17063a40ed3dSBarry Smith   PetscFunctionBegin;
17072d61bbb3SSatish Balay   for (k=0; k<m; k++) { /* loop over rows */
1708cd0e1443SSatish Balay     row  = im[k]; brow = row/bs;
170997e567efSBarry Smith     if (row < 0) {v += n; continue;} /* SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); */
1710899cda47SBarry Smith     if (row >= A->rmap.N) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Row %D too large", row);
17112d61bbb3SSatish Balay     rp   = aj + ai[brow] ; ap = aa + bs2*ai[brow] ;
17122c3acbe9SBarry Smith     nrow = ailen[brow];
17132d61bbb3SSatish Balay     for (l=0; l<n; l++) { /* loop over columns */
171497e567efSBarry Smith       if (in[l] < 0) {v++; continue;} /* SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); */
1715899cda47SBarry Smith       if (in[l] >= A->cmap.n) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Column %D too large", in[l]);
17162d61bbb3SSatish Balay       col  = in[l] ;
17172d61bbb3SSatish Balay       bcol = col/bs;
17182d61bbb3SSatish Balay       cidx = col%bs;
17192d61bbb3SSatish Balay       ridx = row%bs;
17202d61bbb3SSatish Balay       high = nrow;
17212d61bbb3SSatish Balay       low  = 0; /* assume unsorted */
17222d61bbb3SSatish Balay       while (high-low > 5) {
1723cd0e1443SSatish Balay         t = (low+high)/2;
1724cd0e1443SSatish Balay         if (rp[t] > bcol) high = t;
1725cd0e1443SSatish Balay         else             low  = t;
1726cd0e1443SSatish Balay       }
1727cd0e1443SSatish Balay       for (i=low; i<high; i++) {
1728cd0e1443SSatish Balay         if (rp[i] > bcol) break;
1729cd0e1443SSatish Balay         if (rp[i] == bcol) {
17302d61bbb3SSatish Balay           *v++ = ap[bs2*i+bs*cidx+ridx];
17312d61bbb3SSatish Balay           goto finished;
1732cd0e1443SSatish Balay         }
1733cd0e1443SSatish Balay       }
173497e567efSBarry Smith       *v++ = 0.0;
17352d61bbb3SSatish Balay       finished:;
1736cd0e1443SSatish Balay     }
1737cd0e1443SSatish Balay   }
17383a40ed3dSBarry Smith   PetscFunctionReturn(0);
1739cd0e1443SSatish Balay }
1740cd0e1443SSatish Balay 
174197e5c40aSBarry Smith #define CHUNKSIZE 10
17424a2ae208SSatish Balay #undef __FUNCT__
17434a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_SeqBAIJ"
1744dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is)
174592c4ed94SBarry Smith {
174692c4ed94SBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
1747e2ee6c50SBarry Smith   PetscInt          *rp,k,low,high,t,ii,jj,row,nrow,i,col,l,rmax,N,lastcol = -1;
1748c1ac3661SBarry Smith   PetscInt          *imax=a->imax,*ai=a->i,*ailen=a->ilen;
17496849ba73SBarry Smith   PetscErrorCode    ierr;
1750899cda47SBarry Smith   PetscInt          *aj=a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap.bs,stepval;
1751273d9f13SBarry Smith   PetscTruth        roworiented=a->roworiented;
1752dd6ea824SBarry Smith   const PetscScalar *value = v;
1753f15d580aSBarry Smith   MatScalar         *ap,*aa = a->a,*bap;
175492c4ed94SBarry Smith 
17553a40ed3dSBarry Smith   PetscFunctionBegin;
17560e324ae4SSatish Balay   if (roworiented) {
17570e324ae4SSatish Balay     stepval = (n-1)*bs;
17580e324ae4SSatish Balay   } else {
17590e324ae4SSatish Balay     stepval = (m-1)*bs;
17600e324ae4SSatish Balay   }
176192c4ed94SBarry Smith   for (k=0; k<m; k++) { /* loop over added rows */
176292c4ed94SBarry Smith     row  = im[k];
17635ef9f2a5SBarry Smith     if (row < 0) continue;
17642515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
176577431f27SBarry Smith     if (row >= a->mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,a->mbs-1);
176692c4ed94SBarry Smith #endif
176792c4ed94SBarry Smith     rp   = aj + ai[row];
176892c4ed94SBarry Smith     ap   = aa + bs2*ai[row];
176992c4ed94SBarry Smith     rmax = imax[row];
177092c4ed94SBarry Smith     nrow = ailen[row];
177192c4ed94SBarry Smith     low  = 0;
1772c71e6ed7SBarry Smith     high = nrow;
177392c4ed94SBarry Smith     for (l=0; l<n; l++) { /* loop over added columns */
17745ef9f2a5SBarry Smith       if (in[l] < 0) continue;
17752515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
177677431f27SBarry Smith       if (in[l] >= a->nbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[l],a->nbs-1);
177792c4ed94SBarry Smith #endif
177892c4ed94SBarry Smith       col = in[l];
177992c4ed94SBarry Smith       if (roworiented) {
17800e324ae4SSatish Balay         value = v + k*(stepval+bs)*bs + l*bs;
17810e324ae4SSatish Balay       } else {
17820e324ae4SSatish Balay         value = v + l*(stepval+bs)*bs + k*bs;
178392c4ed94SBarry Smith       }
17847cd84e04SBarry Smith       if (col <= lastcol) low = 0; else high = nrow;
1785e2ee6c50SBarry Smith       lastcol = col;
178692c4ed94SBarry Smith       while (high-low > 7) {
178792c4ed94SBarry Smith         t = (low+high)/2;
178892c4ed94SBarry Smith         if (rp[t] > col) high = t;
178992c4ed94SBarry Smith         else             low  = t;
179092c4ed94SBarry Smith       }
179192c4ed94SBarry Smith       for (i=low; i<high; i++) {
179292c4ed94SBarry Smith         if (rp[i] > col) break;
179392c4ed94SBarry Smith         if (rp[i] == col) {
17948a84c255SSatish Balay           bap  = ap +  bs2*i;
17950e324ae4SSatish Balay           if (roworiented) {
17968a84c255SSatish Balay             if (is == ADD_VALUES) {
1797dd9472c6SBarry Smith               for (ii=0; ii<bs; ii++,value+=stepval) {
1798dd9472c6SBarry Smith                 for (jj=ii; jj<bs2; jj+=bs) {
17998a84c255SSatish Balay                   bap[jj] += *value++;
1800dd9472c6SBarry Smith                 }
1801dd9472c6SBarry Smith               }
18020e324ae4SSatish Balay             } else {
1803dd9472c6SBarry Smith               for (ii=0; ii<bs; ii++,value+=stepval) {
1804dd9472c6SBarry Smith                 for (jj=ii; jj<bs2; jj+=bs) {
18050e324ae4SSatish Balay                   bap[jj] = *value++;
18068a84c255SSatish Balay                 }
1807dd9472c6SBarry Smith               }
1808dd9472c6SBarry Smith             }
18090e324ae4SSatish Balay           } else {
18100e324ae4SSatish Balay             if (is == ADD_VALUES) {
1811dd9472c6SBarry Smith               for (ii=0; ii<bs; ii++,value+=stepval) {
1812dd9472c6SBarry Smith                 for (jj=0; jj<bs; jj++) {
18130e324ae4SSatish Balay                   *bap++ += *value++;
1814dd9472c6SBarry Smith                 }
1815dd9472c6SBarry Smith               }
18160e324ae4SSatish Balay             } else {
1817dd9472c6SBarry Smith               for (ii=0; ii<bs; ii++,value+=stepval) {
1818dd9472c6SBarry Smith                 for (jj=0; jj<bs; jj++) {
18190e324ae4SSatish Balay                   *bap++  = *value++;
18200e324ae4SSatish Balay                 }
18218a84c255SSatish Balay               }
1822dd9472c6SBarry Smith             }
1823dd9472c6SBarry Smith           }
1824f1241b54SBarry Smith           goto noinsert2;
182592c4ed94SBarry Smith         }
182692c4ed94SBarry Smith       }
182789280ab3SLois Curfman McInnes       if (nonew == 1) goto noinsert2;
1828085a36d4SBarry Smith       if (nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col);
1829421e10b8SBarry Smith       MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
1830c03d1d03SSatish Balay       N = nrow++ - 1; high++;
183192c4ed94SBarry Smith       /* shift up all the later entries in this row */
183292c4ed94SBarry Smith       for (ii=N; ii>=i; ii--) {
183392c4ed94SBarry Smith         rp[ii+1] = rp[ii];
1834549d3d68SSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr);
183592c4ed94SBarry Smith       }
1836549d3d68SSatish Balay       if (N >= i) {
1837549d3d68SSatish Balay         ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr);
1838549d3d68SSatish Balay       }
183992c4ed94SBarry Smith       rp[i] = col;
18408a84c255SSatish Balay       bap   = ap +  bs2*i;
18410e324ae4SSatish Balay       if (roworiented) {
1842dd9472c6SBarry Smith         for (ii=0; ii<bs; ii++,value+=stepval) {
1843dd9472c6SBarry Smith           for (jj=ii; jj<bs2; jj+=bs) {
18440e324ae4SSatish Balay             bap[jj] = *value++;
1845dd9472c6SBarry Smith           }
1846dd9472c6SBarry Smith         }
18470e324ae4SSatish Balay       } else {
1848dd9472c6SBarry Smith         for (ii=0; ii<bs; ii++,value+=stepval) {
1849dd9472c6SBarry Smith           for (jj=0; jj<bs; jj++) {
18500e324ae4SSatish Balay             *bap++  = *value++;
18510e324ae4SSatish Balay           }
1852dd9472c6SBarry Smith         }
1853dd9472c6SBarry Smith       }
1854f1241b54SBarry Smith       noinsert2:;
185592c4ed94SBarry Smith       low = i;
185692c4ed94SBarry Smith     }
185792c4ed94SBarry Smith     ailen[row] = nrow;
185892c4ed94SBarry Smith   }
18593a40ed3dSBarry Smith   PetscFunctionReturn(0);
186092c4ed94SBarry Smith }
186126e093fcSHong Zhang 
18624a2ae208SSatish Balay #undef __FUNCT__
18634a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_SeqBAIJ"
1864dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_SeqBAIJ(Mat A,MatAssemblyType mode)
1865584200bdSSatish Balay {
1866584200bdSSatish Balay   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
1867c1ac3661SBarry Smith   PetscInt       fshift = 0,i,j,*ai = a->i,*aj = a->j,*imax = a->imax;
1868899cda47SBarry Smith   PetscInt       m = A->rmap.N,*ip,N,*ailen = a->ilen;
18696849ba73SBarry Smith   PetscErrorCode ierr;
1870c1ac3661SBarry Smith   PetscInt       mbs = a->mbs,bs2 = a->bs2,rmax = 0;
18713f1db9ecSBarry Smith   MatScalar      *aa = a->a,*ap;
18723447b6efSHong Zhang   PetscReal      ratio=0.6;
1873584200bdSSatish Balay 
18743a40ed3dSBarry Smith   PetscFunctionBegin;
18753a40ed3dSBarry Smith   if (mode == MAT_FLUSH_ASSEMBLY) PetscFunctionReturn(0);
1876584200bdSSatish Balay 
187743ee02c3SBarry Smith   if (m) rmax = ailen[0];
1878584200bdSSatish Balay   for (i=1; i<mbs; i++) {
1879584200bdSSatish Balay     /* move each row back by the amount of empty slots (fshift) before it*/
1880584200bdSSatish Balay     fshift += imax[i-1] - ailen[i-1];
1881d402145bSBarry Smith     rmax   = PetscMax(rmax,ailen[i]);
1882584200bdSSatish Balay     if (fshift) {
1883a7c10996SSatish Balay       ip = aj + ai[i]; ap = aa + bs2*ai[i];
1884584200bdSSatish Balay       N = ailen[i];
1885584200bdSSatish Balay       for (j=0; j<N; j++) {
1886584200bdSSatish Balay         ip[j-fshift] = ip[j];
1887549d3d68SSatish Balay         ierr = PetscMemcpy(ap+(j-fshift)*bs2,ap+j*bs2,bs2*sizeof(MatScalar));CHKERRQ(ierr);
1888584200bdSSatish Balay       }
1889584200bdSSatish Balay     }
1890584200bdSSatish Balay     ai[i] = ai[i-1] + ailen[i-1];
1891584200bdSSatish Balay   }
1892584200bdSSatish Balay   if (mbs) {
1893584200bdSSatish Balay     fshift += imax[mbs-1] - ailen[mbs-1];
1894584200bdSSatish Balay     ai[mbs] = ai[mbs-1] + ailen[mbs-1];
1895584200bdSSatish Balay   }
1896584200bdSSatish Balay   /* reset ilen and imax for each row */
1897584200bdSSatish Balay   for (i=0; i<mbs; i++) {
1898584200bdSSatish Balay     ailen[i] = imax[i] = ai[i+1] - ai[i];
1899584200bdSSatish Balay   }
1900a7c10996SSatish Balay   a->nz = ai[mbs];
1901584200bdSSatish Balay 
1902584200bdSSatish Balay   /* diagonals may have moved, so kill the diagonal pointers */
1903b01c7715SBarry Smith   a->idiagvalid = PETSC_FALSE;
1904584200bdSSatish Balay   if (fshift && a->diag) {
1905606d414cSSatish Balay     ierr = PetscFree(a->diag);CHKERRQ(ierr);
190652e6d16bSBarry Smith     ierr = PetscLogObjectMemory(A,-(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr);
1907584200bdSSatish Balay     a->diag = 0;
1908584200bdSSatish Balay   }
1909899cda47SBarry Smith   ierr = PetscInfo5(A,"Matrix size: %D X %D, block size %D; storage space: %D unneeded, %D used\n",m,A->cmap.n,A->rmap.bs,fshift*bs2,a->nz*bs2);CHKERRQ(ierr);
1910ae15b995SBarry Smith   ierr = PetscInfo1(A,"Number of mallocs during MatSetValues is %D\n",a->reallocs);CHKERRQ(ierr);
1911ae15b995SBarry Smith   ierr = PetscInfo1(A,"Most nonzeros blocks in any row is %D\n",rmax);CHKERRQ(ierr);
1912e2f3b5e9SSatish Balay   a->reallocs          = 0;
19130e6d2581SBarry Smith   A->info.nz_unneeded  = (PetscReal)fshift*bs2;
1914cf4441caSHong Zhang 
1915cb5d8e9eSHong Zhang   /* check for zero rows. If found a large number of zero rows, use CompressedRow functions */
19162f53aa61SHong Zhang   if (a->compressedrow.use){
1917317fbc4cSHong Zhang     ierr = Mat_CheckCompressedRow(A,&a->compressedrow,a->i,mbs,ratio);CHKERRQ(ierr);
191873e7a558SHong Zhang   }
191988e51ccdSHong Zhang 
192088e51ccdSHong Zhang   A->same_nonzero = PETSC_TRUE;
19213a40ed3dSBarry Smith   PetscFunctionReturn(0);
1922584200bdSSatish Balay }
1923584200bdSSatish Balay 
1924bea157c4SSatish Balay /*
1925bea157c4SSatish Balay    This function returns an array of flags which indicate the locations of contiguous
1926bea157c4SSatish Balay    blocks that should be zeroed. for eg: if bs = 3  and is = [0,1,2,3,5,6,7,8,9]
1927bea157c4SSatish Balay    then the resulting sizes = [3,1,1,3,1] correspondig to sets [(0,1,2),(3),(5),(6,7,8),(9)]
1928bea157c4SSatish Balay    Assume: sizes should be long enough to hold all the values.
1929bea157c4SSatish Balay */
19304a2ae208SSatish Balay #undef __FUNCT__
19314a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_SeqBAIJ_Check_Blocks"
1932c1ac3661SBarry Smith static PetscErrorCode MatZeroRows_SeqBAIJ_Check_Blocks(PetscInt idx[],PetscInt n,PetscInt bs,PetscInt sizes[], PetscInt *bs_max)
1933d9b7c43dSSatish Balay {
1934c1ac3661SBarry Smith   PetscInt   i,j,k,row;
1935bea157c4SSatish Balay   PetscTruth flg;
19363a40ed3dSBarry Smith 
1937433994e6SBarry Smith   PetscFunctionBegin;
1938bea157c4SSatish Balay   for (i=0,j=0; i<n; j++) {
1939bea157c4SSatish Balay     row = idx[i];
1940bea157c4SSatish Balay     if (row%bs!=0) { /* Not the begining of a block */
1941bea157c4SSatish Balay       sizes[j] = 1;
1942bea157c4SSatish Balay       i++;
1943e4fda26cSSatish Balay     } else if (i+bs > n) { /* complete block doesn't exist (at idx end) */
1944bea157c4SSatish Balay       sizes[j] = 1;         /* Also makes sure atleast 'bs' values exist for next else */
1945bea157c4SSatish Balay       i++;
1946bea157c4SSatish Balay     } else { /* Begining of the block, so check if the complete block exists */
1947bea157c4SSatish Balay       flg = PETSC_TRUE;
1948bea157c4SSatish Balay       for (k=1; k<bs; k++) {
1949bea157c4SSatish Balay         if (row+k != idx[i+k]) { /* break in the block */
1950bea157c4SSatish Balay           flg = PETSC_FALSE;
1951bea157c4SSatish Balay           break;
1952d9b7c43dSSatish Balay         }
1953bea157c4SSatish Balay       }
1954abc0a331SBarry Smith       if (flg) { /* No break in the bs */
1955bea157c4SSatish Balay         sizes[j] = bs;
1956bea157c4SSatish Balay         i+= bs;
1957bea157c4SSatish Balay       } else {
1958bea157c4SSatish Balay         sizes[j] = 1;
1959bea157c4SSatish Balay         i++;
1960bea157c4SSatish Balay       }
1961bea157c4SSatish Balay     }
1962bea157c4SSatish Balay   }
1963bea157c4SSatish Balay   *bs_max = j;
19643a40ed3dSBarry Smith   PetscFunctionReturn(0);
1965d9b7c43dSSatish Balay }
1966d9b7c43dSSatish Balay 
19674a2ae208SSatish Balay #undef __FUNCT__
19684a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_SeqBAIJ"
1969f4df32b1SMatthew Knepley PetscErrorCode MatZeroRows_SeqBAIJ(Mat A,PetscInt is_n,const PetscInt is_idx[],PetscScalar diag)
1970d9b7c43dSSatish Balay {
1971d9b7c43dSSatish Balay   Mat_SeqBAIJ    *baij=(Mat_SeqBAIJ*)A->data;
1972dfbe8321SBarry Smith   PetscErrorCode ierr;
1973f4df32b1SMatthew Knepley   PetscInt       i,j,k,count,*rows;
1974899cda47SBarry Smith   PetscInt       bs=A->rmap.bs,bs2=baij->bs2,*sizes,row,bs_max;
197587828ca2SBarry Smith   PetscScalar    zero = 0.0;
19763f1db9ecSBarry Smith   MatScalar      *aa;
1977d9b7c43dSSatish Balay 
19783a40ed3dSBarry Smith   PetscFunctionBegin;
1979d9b7c43dSSatish Balay   /* Make a copy of the IS and  sort it */
1980bea157c4SSatish Balay   /* allocate memory for rows,sizes */
1981c1ac3661SBarry Smith   ierr  = PetscMalloc((3*is_n+1)*sizeof(PetscInt),&rows);CHKERRQ(ierr);
1982bea157c4SSatish Balay   sizes = rows + is_n;
1983bea157c4SSatish Balay 
1984563b5814SBarry Smith   /* copy IS values to rows, and sort them */
1985bea157c4SSatish Balay   for (i=0; i<is_n; i++) { rows[i] = is_idx[i]; }
1986bea157c4SSatish Balay   ierr = PetscSortInt(is_n,rows);CHKERRQ(ierr);
1987dffd3267SBarry Smith   if (baij->keepzeroedrows) {
1988dffd3267SBarry Smith     for (i=0; i<is_n; i++) { sizes[i] = 1; }
1989dffd3267SBarry Smith     bs_max = is_n;
199088e51ccdSHong Zhang     A->same_nonzero = PETSC_TRUE;
1991dffd3267SBarry Smith   } else {
1992bea157c4SSatish Balay     ierr = MatZeroRows_SeqBAIJ_Check_Blocks(rows,is_n,bs,sizes,&bs_max);CHKERRQ(ierr);
199388e51ccdSHong Zhang     A->same_nonzero = PETSC_FALSE;
1994dffd3267SBarry Smith   }
1995bea157c4SSatish Balay 
1996bea157c4SSatish Balay   for (i=0,j=0; i<bs_max; j+=sizes[i],i++) {
1997bea157c4SSatish Balay     row   = rows[j];
1998899cda47SBarry Smith     if (row < 0 || row > A->rmap.N) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"row %D out of range",row);
1999bea157c4SSatish Balay     count = (baij->i[row/bs +1] - baij->i[row/bs])*bs;
2000b31fbe3bSSatish Balay     aa    = ((MatScalar*)(baij->a)) + baij->i[row/bs]*bs2 + (row%bs);
2001dffd3267SBarry Smith     if (sizes[i] == bs && !baij->keepzeroedrows) {
2002f4df32b1SMatthew Knepley       if (diag != 0.0) {
2003bea157c4SSatish Balay         if (baij->ilen[row/bs] > 0) {
2004bea157c4SSatish Balay           baij->ilen[row/bs]       = 1;
2005bea157c4SSatish Balay           baij->j[baij->i[row/bs]] = row/bs;
2006bea157c4SSatish Balay           ierr = PetscMemzero(aa,count*bs*sizeof(MatScalar));CHKERRQ(ierr);
2007a07cd24cSSatish Balay         }
2008563b5814SBarry Smith         /* Now insert all the diagonal values for this bs */
2009bea157c4SSatish Balay         for (k=0; k<bs; k++) {
2010f4df32b1SMatthew Knepley           ierr = (*A->ops->setvalues)(A,1,rows+j+k,1,rows+j+k,&diag,INSERT_VALUES);CHKERRQ(ierr);
2011bea157c4SSatish Balay         }
2012f4df32b1SMatthew Knepley       } else { /* (diag == 0.0) */
2013bea157c4SSatish Balay         baij->ilen[row/bs] = 0;
2014f4df32b1SMatthew Knepley       } /* end (diag == 0.0) */
2015bea157c4SSatish Balay     } else { /* (sizes[i] != bs) */
2016aa482453SBarry Smith #if defined (PETSC_USE_DEBUG)
2017634064b4SBarry Smith       if (sizes[i] != 1) SETERRQ(PETSC_ERR_PLIB,"Internal Error. Value should be 1");
2018bea157c4SSatish Balay #endif
2019bea157c4SSatish Balay       for (k=0; k<count; k++) {
2020d9b7c43dSSatish Balay         aa[0] =  zero;
2021d9b7c43dSSatish Balay         aa    += bs;
2022d9b7c43dSSatish Balay       }
2023f4df32b1SMatthew Knepley       if (diag != 0.0) {
2024f4df32b1SMatthew Knepley         ierr = (*A->ops->setvalues)(A,1,rows+j,1,rows+j,&diag,INSERT_VALUES);CHKERRQ(ierr);
2025d9b7c43dSSatish Balay       }
2026d9b7c43dSSatish Balay     }
2027bea157c4SSatish Balay   }
2028bea157c4SSatish Balay 
2029606d414cSSatish Balay   ierr = PetscFree(rows);CHKERRQ(ierr);
20309a8dea36SBarry Smith   ierr = MatAssemblyEnd_SeqBAIJ(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
20313a40ed3dSBarry Smith   PetscFunctionReturn(0);
2032d9b7c43dSSatish Balay }
20331c351548SSatish Balay 
20344a2ae208SSatish Balay #undef __FUNCT__
20354a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_SeqBAIJ"
2036c1ac3661SBarry Smith PetscErrorCode MatSetValues_SeqBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is)
20372d61bbb3SSatish Balay {
20382d61bbb3SSatish Balay   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
2039e2ee6c50SBarry Smith   PetscInt       *rp,k,low,high,t,ii,row,nrow,i,col,l,rmax,N,lastcol = -1;
2040c1ac3661SBarry Smith   PetscInt       *imax=a->imax,*ai=a->i,*ailen=a->ilen;
2041899cda47SBarry Smith   PetscInt       *aj=a->j,nonew=a->nonew,bs=A->rmap.bs,brow,bcol;
20426849ba73SBarry Smith   PetscErrorCode ierr;
2043c1ac3661SBarry Smith   PetscInt       ridx,cidx,bs2=a->bs2;
2044273d9f13SBarry Smith   PetscTruth     roworiented=a->roworiented;
20453f1db9ecSBarry Smith   MatScalar      *ap,value,*aa=a->a,*bap;
20462d61bbb3SSatish Balay 
20472d61bbb3SSatish Balay   PetscFunctionBegin;
20482d61bbb3SSatish Balay   for (k=0; k<m; k++) { /* loop over added rows */
2049085a36d4SBarry Smith     row  = im[k];
2050085a36d4SBarry Smith     brow = row/bs;
20515ef9f2a5SBarry Smith     if (row < 0) continue;
20522515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
2053899cda47SBarry Smith     if (row >= A->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,A->rmap.N-1);
20542d61bbb3SSatish Balay #endif
20552d61bbb3SSatish Balay     rp   = aj + ai[brow];
20562d61bbb3SSatish Balay     ap   = aa + bs2*ai[brow];
20572d61bbb3SSatish Balay     rmax = imax[brow];
20582d61bbb3SSatish Balay     nrow = ailen[brow];
20592d61bbb3SSatish Balay     low  = 0;
2060c71e6ed7SBarry Smith     high = nrow;
20612d61bbb3SSatish Balay     for (l=0; l<n; l++) { /* loop over added columns */
20625ef9f2a5SBarry Smith       if (in[l] < 0) continue;
20632515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
2064899cda47SBarry Smith       if (in[l] >= A->cmap.n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[l],A->cmap.n-1);
20652d61bbb3SSatish Balay #endif
20662d61bbb3SSatish Balay       col = in[l]; bcol = col/bs;
20672d61bbb3SSatish Balay       ridx = row % bs; cidx = col % bs;
20682d61bbb3SSatish Balay       if (roworiented) {
20695ef9f2a5SBarry Smith         value = v[l + k*n];
20702d61bbb3SSatish Balay       } else {
20712d61bbb3SSatish Balay         value = v[k + l*m];
20722d61bbb3SSatish Balay       }
20737cd84e04SBarry Smith       if (col <= lastcol) low = 0; else high = nrow;
2074e2ee6c50SBarry Smith       lastcol = col;
20752d61bbb3SSatish Balay       while (high-low > 7) {
20762d61bbb3SSatish Balay         t = (low+high)/2;
20772d61bbb3SSatish Balay         if (rp[t] > bcol) high = t;
20782d61bbb3SSatish Balay         else              low  = t;
20792d61bbb3SSatish Balay       }
20802d61bbb3SSatish Balay       for (i=low; i<high; i++) {
20812d61bbb3SSatish Balay         if (rp[i] > bcol) break;
20822d61bbb3SSatish Balay         if (rp[i] == bcol) {
20832d61bbb3SSatish Balay           bap  = ap +  bs2*i + bs*cidx + ridx;
20842d61bbb3SSatish Balay           if (is == ADD_VALUES) *bap += value;
20852d61bbb3SSatish Balay           else                  *bap  = value;
20862d61bbb3SSatish Balay           goto noinsert1;
20872d61bbb3SSatish Balay         }
20882d61bbb3SSatish Balay       }
20892d61bbb3SSatish Balay       if (nonew == 1) goto noinsert1;
2090085a36d4SBarry Smith       if (nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col);
2091421e10b8SBarry Smith       MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
2092c03d1d03SSatish Balay       N = nrow++ - 1; high++;
20932d61bbb3SSatish Balay       /* shift up all the later entries in this row */
20942d61bbb3SSatish Balay       for (ii=N; ii>=i; ii--) {
20952d61bbb3SSatish Balay         rp[ii+1] = rp[ii];
2096549d3d68SSatish Balay         ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr);
20972d61bbb3SSatish Balay       }
2098549d3d68SSatish Balay       if (N>=i) {
2099549d3d68SSatish Balay         ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr);
2100549d3d68SSatish Balay       }
21012d61bbb3SSatish Balay       rp[i]                      = bcol;
21022d61bbb3SSatish Balay       ap[bs2*i + bs*cidx + ridx] = value;
2103085a36d4SBarry Smith       a->nz++;
21042d61bbb3SSatish Balay       noinsert1:;
21052d61bbb3SSatish Balay       low = i;
21062d61bbb3SSatish Balay     }
21072d61bbb3SSatish Balay     ailen[brow] = nrow;
21082d61bbb3SSatish Balay   }
210988e51ccdSHong Zhang   A->same_nonzero = PETSC_FALSE;
21102d61bbb3SSatish Balay   PetscFunctionReturn(0);
21112d61bbb3SSatish Balay }
21122d61bbb3SSatish Balay 
21132d61bbb3SSatish Balay 
21144a2ae208SSatish Balay #undef __FUNCT__
21154a2ae208SSatish Balay #define __FUNCT__ "MatILUFactor_SeqBAIJ"
2116dfbe8321SBarry Smith PetscErrorCode MatILUFactor_SeqBAIJ(Mat inA,IS row,IS col,MatFactorInfo *info)
21172d61bbb3SSatish Balay {
21182d61bbb3SSatish Balay   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)inA->data;
21192d61bbb3SSatish Balay   Mat            outA;
2120dfbe8321SBarry Smith   PetscErrorCode ierr;
2121667159a5SBarry Smith   PetscTruth     row_identity,col_identity;
21222d61bbb3SSatish Balay 
21232d61bbb3SSatish Balay   PetscFunctionBegin;
2124d3d32019SBarry Smith   if (info->levels != 0) SETERRQ(PETSC_ERR_SUP,"Only levels = 0 supported for in-place ILU");
2125667159a5SBarry Smith   ierr = ISIdentity(row,&row_identity);CHKERRQ(ierr);
2126667159a5SBarry Smith   ierr = ISIdentity(col,&col_identity);CHKERRQ(ierr);
2127667159a5SBarry Smith   if (!row_identity || !col_identity) {
2128634064b4SBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONG,"Row and column permutations must be identity for in-place ILU");
2129667159a5SBarry Smith   }
21302d61bbb3SSatish Balay 
21312d61bbb3SSatish Balay   outA          = inA;
21325c9eb25fSBarry Smith   inA->factor   = MAT_FACTOR_LU;
21332d61bbb3SSatish Balay 
2134c4992f7dSBarry Smith   ierr = MatMarkDiagonal_SeqBAIJ(inA);CHKERRQ(ierr);
2135cf242676SKris Buschelman 
2136c38d4ed2SBarry Smith   ierr = PetscObjectReference((PetscObject)row);CHKERRQ(ierr);
2137c3122656SLisandro Dalcin   if (a->row) { ierr = ISDestroy(a->row);CHKERRQ(ierr); }
2138c3122656SLisandro Dalcin   a->row = row;
2139c38d4ed2SBarry Smith   ierr = PetscObjectReference((PetscObject)col);CHKERRQ(ierr);
2140c3122656SLisandro Dalcin   if (a->col) { ierr = ISDestroy(a->col);CHKERRQ(ierr); }
2141c3122656SLisandro Dalcin   a->col = col;
2142c38d4ed2SBarry Smith 
2143c38d4ed2SBarry Smith   /* Create the invert permutation so that it can be used in MatLUFactorNumeric() */
21444c49b128SBarry Smith   ierr = ISInvertPermutation(col,PETSC_DECIDE,&a->icol);CHKERRQ(ierr);
214552e6d16bSBarry Smith   ierr = PetscLogObjectParent(inA,a->icol);CHKERRQ(ierr);
2146c38d4ed2SBarry Smith 
2147cf242676SKris Buschelman   /*
2148cf242676SKris Buschelman       Blocksize 2, 3, 4, 5, 6 and 7 have a special faster factorization/solver
2149cf242676SKris Buschelman       for ILU(0) factorization with natural ordering
2150cf242676SKris Buschelman   */
2151899cda47SBarry Smith   if (inA->rmap.bs < 8) {
2152cf242676SKris Buschelman     ierr = MatSeqBAIJ_UpdateFactorNumeric_NaturalOrdering(inA);CHKERRQ(ierr);
2153cf242676SKris Buschelman   } else {
2154c38d4ed2SBarry Smith     if (!a->solve_work) {
2155899cda47SBarry Smith       ierr = PetscMalloc((inA->rmap.N+inA->rmap.bs)*sizeof(PetscScalar),&a->solve_work);CHKERRQ(ierr);
2156899cda47SBarry Smith       ierr = PetscLogObjectMemory(inA,(inA->rmap.N+inA->rmap.bs)*sizeof(PetscScalar));CHKERRQ(ierr);
2157c38d4ed2SBarry Smith     }
21582d61bbb3SSatish Balay   }
21592d61bbb3SSatish Balay 
2160af281ebdSHong Zhang   ierr = MatLUFactorNumeric(inA,info,&outA);CHKERRQ(ierr);
2161667159a5SBarry Smith 
21622d61bbb3SSatish Balay   PetscFunctionReturn(0);
21632d61bbb3SSatish Balay }
2164d9b7c43dSSatish Balay 
2165fb2e594dSBarry Smith EXTERN_C_BEGIN
21664a2ae208SSatish Balay #undef __FUNCT__
21674a2ae208SSatish Balay #define __FUNCT__ "MatSeqBAIJSetColumnIndices_SeqBAIJ"
2168be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJSetColumnIndices_SeqBAIJ(Mat mat,PetscInt *indices)
216927a8da17SBarry Smith {
217027a8da17SBarry Smith   Mat_SeqBAIJ *baij = (Mat_SeqBAIJ *)mat->data;
2171c1ac3661SBarry Smith   PetscInt    i,nz,nbs;
217227a8da17SBarry Smith 
217327a8da17SBarry Smith   PetscFunctionBegin;
217414db4f74SSatish Balay   nz  = baij->maxnz/baij->bs2;
217514db4f74SSatish Balay   nbs = baij->nbs;
217627a8da17SBarry Smith   for (i=0; i<nz; i++) {
217727a8da17SBarry Smith     baij->j[i] = indices[i];
217827a8da17SBarry Smith   }
217927a8da17SBarry Smith   baij->nz = nz;
218014db4f74SSatish Balay   for (i=0; i<nbs; i++) {
218127a8da17SBarry Smith     baij->ilen[i] = baij->imax[i];
218227a8da17SBarry Smith   }
218327a8da17SBarry Smith 
218427a8da17SBarry Smith   PetscFunctionReturn(0);
218527a8da17SBarry Smith }
2186fb2e594dSBarry Smith EXTERN_C_END
218727a8da17SBarry Smith 
21884a2ae208SSatish Balay #undef __FUNCT__
21894a2ae208SSatish Balay #define __FUNCT__ "MatSeqBAIJSetColumnIndices"
219027a8da17SBarry Smith /*@
219127a8da17SBarry Smith     MatSeqBAIJSetColumnIndices - Set the column indices for all the rows
219227a8da17SBarry Smith        in the matrix.
219327a8da17SBarry Smith 
219427a8da17SBarry Smith   Input Parameters:
219527a8da17SBarry Smith +  mat - the SeqBAIJ matrix
219627a8da17SBarry Smith -  indices - the column indices
219727a8da17SBarry Smith 
219815091d37SBarry Smith   Level: advanced
219915091d37SBarry Smith 
220027a8da17SBarry Smith   Notes:
220127a8da17SBarry Smith     This can be called if you have precomputed the nonzero structure of the
220227a8da17SBarry Smith   matrix and want to provide it to the matrix object to improve the performance
220327a8da17SBarry Smith   of the MatSetValues() operation.
220427a8da17SBarry Smith 
220527a8da17SBarry Smith     You MUST have set the correct numbers of nonzeros per row in the call to
2206d1be2dadSMatthew Knepley   MatCreateSeqBAIJ(), and the columns indices MUST be sorted.
220727a8da17SBarry Smith 
220827a8da17SBarry Smith     MUST be called before any calls to MatSetValues();
220927a8da17SBarry Smith 
221027a8da17SBarry Smith @*/
2211be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJSetColumnIndices(Mat mat,PetscInt *indices)
221227a8da17SBarry Smith {
2213c1ac3661SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt *);
221427a8da17SBarry Smith 
221527a8da17SBarry Smith   PetscFunctionBegin;
22164482741eSBarry Smith   PetscValidHeaderSpecific(mat,MAT_COOKIE,1);
22174482741eSBarry Smith   PetscValidPointer(indices,2);
2218c134de8dSSatish Balay   ierr = PetscObjectQueryFunction((PetscObject)mat,"MatSeqBAIJSetColumnIndices_C",(void (**)(void))&f);CHKERRQ(ierr);
221927a8da17SBarry Smith   if (f) {
222027a8da17SBarry Smith     ierr = (*f)(mat,indices);CHKERRQ(ierr);
222127a8da17SBarry Smith   } else {
2222634064b4SBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONG,"Wrong type of matrix to set column indices");
222327a8da17SBarry Smith   }
222427a8da17SBarry Smith   PetscFunctionReturn(0);
222527a8da17SBarry Smith }
222627a8da17SBarry Smith 
22274a2ae208SSatish Balay #undef __FUNCT__
2228985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_SeqBAIJ"
2229985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_SeqBAIJ(Mat A,Vec v,PetscInt idx[])
2230273d9f13SBarry Smith {
2231273d9f13SBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
2232dfbe8321SBarry Smith   PetscErrorCode ierr;
2233c1ac3661SBarry Smith   PetscInt       i,j,n,row,bs,*ai,*aj,mbs;
2234273d9f13SBarry Smith   PetscReal      atmp;
223587828ca2SBarry Smith   PetscScalar    *x,zero = 0.0;
2236273d9f13SBarry Smith   MatScalar      *aa;
2237c1ac3661SBarry Smith   PetscInt       ncols,brow,krow,kcol;
2238273d9f13SBarry Smith 
2239273d9f13SBarry Smith   PetscFunctionBegin;
2240273d9f13SBarry Smith   if (A->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
2241899cda47SBarry Smith   bs   = A->rmap.bs;
2242273d9f13SBarry Smith   aa   = a->a;
2243273d9f13SBarry Smith   ai   = a->i;
2244273d9f13SBarry Smith   aj   = a->j;
2245273d9f13SBarry Smith   mbs  = a->mbs;
2246273d9f13SBarry Smith 
22472dcb1b2aSMatthew Knepley   ierr = VecSet(v,zero);CHKERRQ(ierr);
22481ebc52fbSHong Zhang   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
2249273d9f13SBarry Smith   ierr = VecGetLocalSize(v,&n);CHKERRQ(ierr);
2250899cda47SBarry Smith   if (n != A->rmap.N) SETERRQ(PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector");
2251273d9f13SBarry Smith   for (i=0; i<mbs; i++) {
2252273d9f13SBarry Smith     ncols = ai[1] - ai[0]; ai++;
2253273d9f13SBarry Smith     brow  = bs*i;
2254273d9f13SBarry Smith     for (j=0; j<ncols; j++){
2255273d9f13SBarry Smith       for (kcol=0; kcol<bs; kcol++){
2256273d9f13SBarry Smith         for (krow=0; krow<bs; krow++){
2257273d9f13SBarry Smith           atmp = PetscAbsScalar(*aa);aa++;
2258273d9f13SBarry Smith           row = brow + krow;    /* row index */
2259a83599f4SBarry Smith           /* printf("val[%d,%d]: %G\n",row,bcol+kcol,atmp); */
2260985db425SBarry Smith           if (PetscAbsScalar(x[row]) < atmp) {x[row] = atmp; if (idx) idx[row] = bs*(*aj) + kcol;}
2261273d9f13SBarry Smith         }
2262273d9f13SBarry Smith       }
2263273d9f13SBarry Smith       aj++;
2264273d9f13SBarry Smith     }
2265273d9f13SBarry Smith   }
22661ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
2267273d9f13SBarry Smith   PetscFunctionReturn(0);
2268273d9f13SBarry Smith }
2269273d9f13SBarry Smith 
22704a2ae208SSatish Balay #undef __FUNCT__
22713c896bc6SHong Zhang #define __FUNCT__ "MatCopy_SeqBAIJ"
22723c896bc6SHong Zhang PetscErrorCode MatCopy_SeqBAIJ(Mat A,Mat B,MatStructure str)
22733c896bc6SHong Zhang {
22743c896bc6SHong Zhang   PetscErrorCode ierr;
22753c896bc6SHong Zhang 
22763c896bc6SHong Zhang   PetscFunctionBegin;
22773c896bc6SHong Zhang   /* If the two matrices have the same copy implementation, use fast copy. */
22783c896bc6SHong Zhang   if (str == SAME_NONZERO_PATTERN && (A->ops->copy == B->ops->copy)) {
22793c896bc6SHong Zhang     Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data;
22803c896bc6SHong Zhang     Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)B->data;
22813c896bc6SHong Zhang 
2282899cda47SBarry Smith     if (a->i[A->rmap.N] != b->i[B->rmap.N]) {
22833c896bc6SHong Zhang       SETERRQ(PETSC_ERR_ARG_INCOMP,"Number of nonzeros in two matrices are different");
22843c896bc6SHong Zhang     }
2285899cda47SBarry Smith     ierr = PetscMemcpy(b->a,a->a,(a->i[A->rmap.N])*sizeof(PetscScalar));CHKERRQ(ierr);
22863c896bc6SHong Zhang   } else {
22873c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
22883c896bc6SHong Zhang   }
22893c896bc6SHong Zhang   PetscFunctionReturn(0);
22903c896bc6SHong Zhang }
22913c896bc6SHong Zhang 
22923c896bc6SHong Zhang #undef __FUNCT__
22934a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_SeqBAIJ"
2294dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_SeqBAIJ(Mat A)
2295273d9f13SBarry Smith {
2296dfbe8321SBarry Smith   PetscErrorCode ierr;
2297273d9f13SBarry Smith 
2298273d9f13SBarry Smith   PetscFunctionBegin;
22997edd0491SSatish Balay   ierr =  MatSeqBAIJSetPreallocation_SeqBAIJ(A,PetscMax(A->rmap.bs,1),PETSC_DEFAULT,0);CHKERRQ(ierr);
2300273d9f13SBarry Smith   PetscFunctionReturn(0);
2301273d9f13SBarry Smith }
2302273d9f13SBarry Smith 
23034a2ae208SSatish Balay #undef __FUNCT__
23044a2ae208SSatish Balay #define __FUNCT__ "MatGetArray_SeqBAIJ"
2305dfbe8321SBarry Smith PetscErrorCode MatGetArray_SeqBAIJ(Mat A,PetscScalar *array[])
2306f2a5309cSSatish Balay {
2307f2a5309cSSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data;
2308f2a5309cSSatish Balay   PetscFunctionBegin;
2309f2a5309cSSatish Balay   *array = a->a;
2310f2a5309cSSatish Balay   PetscFunctionReturn(0);
2311f2a5309cSSatish Balay }
2312f2a5309cSSatish Balay 
23134a2ae208SSatish Balay #undef __FUNCT__
23144a2ae208SSatish Balay #define __FUNCT__ "MatRestoreArray_SeqBAIJ"
2315dfbe8321SBarry Smith PetscErrorCode MatRestoreArray_SeqBAIJ(Mat A,PetscScalar *array[])
2316f2a5309cSSatish Balay {
2317f2a5309cSSatish Balay   PetscFunctionBegin;
2318f2a5309cSSatish Balay   PetscFunctionReturn(0);
2319f2a5309cSSatish Balay }
2320f2a5309cSSatish Balay 
232142ee4b1aSHong Zhang #include "petscblaslapack.h"
232242ee4b1aSHong Zhang #undef __FUNCT__
232342ee4b1aSHong Zhang #define __FUNCT__ "MatAXPY_SeqBAIJ"
2324f4df32b1SMatthew Knepley PetscErrorCode MatAXPY_SeqBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
232542ee4b1aSHong Zhang {
232642ee4b1aSHong Zhang   Mat_SeqBAIJ    *x  = (Mat_SeqBAIJ *)X->data,*y = (Mat_SeqBAIJ *)Y->data;
2327dfbe8321SBarry Smith   PetscErrorCode ierr;
2328899cda47SBarry Smith   PetscInt       i,bs=Y->rmap.bs,j,bs2;
23290805154bSBarry Smith   PetscBLASInt   one=1,bnz = PetscBLASIntCast(x->nz);
233042ee4b1aSHong Zhang 
233142ee4b1aSHong Zhang   PetscFunctionBegin;
233242ee4b1aSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
2333f4df32b1SMatthew Knepley     PetscScalar alpha = a;
2334f4df32b1SMatthew Knepley     BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one);
2335c537a176SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
2336c4319e64SHong Zhang     if (y->xtoy && y->XtoY != X) {
2337c4319e64SHong Zhang       ierr = PetscFree(y->xtoy);CHKERRQ(ierr);
2338c4319e64SHong Zhang       ierr = MatDestroy(y->XtoY);CHKERRQ(ierr);
2339c537a176SHong Zhang     }
2340c4319e64SHong Zhang     if (!y->xtoy) { /* get xtoy */
2341c4319e64SHong Zhang       ierr = MatAXPYGetxtoy_Private(x->mbs,x->i,x->j,PETSC_NULL, y->i,y->j,PETSC_NULL, &y->xtoy);CHKERRQ(ierr);
2342c4319e64SHong Zhang       y->XtoY = X;
2343c537a176SHong Zhang     }
2344c4319e64SHong Zhang     bs2 = bs*bs;
2345c537a176SHong Zhang     for (i=0; i<x->nz; i++) {
2346c4319e64SHong Zhang       j = 0;
2347c4319e64SHong Zhang       while (j < bs2){
2348f4df32b1SMatthew Knepley         y->a[bs2*y->xtoy[i]+j] += a*(x->a[bs2*i+j]);
2349c4319e64SHong Zhang         j++;
2350c537a176SHong Zhang       }
2351c4319e64SHong Zhang     }
23521e2582c4SBarry Smith     ierr = PetscInfo3(Y,"ratio of nnz(X)/nnz(Y): %D/%D = %G\n",bs2*x->nz,bs2*y->nz,(PetscReal)(bs2*x->nz)/(bs2*y->nz));CHKERRQ(ierr);
235342ee4b1aSHong Zhang   } else {
2354f4df32b1SMatthew Knepley     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
235542ee4b1aSHong Zhang   }
235642ee4b1aSHong Zhang   PetscFunctionReturn(0);
235742ee4b1aSHong Zhang }
235842ee4b1aSHong Zhang 
235999cafbc1SBarry Smith #undef __FUNCT__
236099cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_SeqBAIJ"
236199cafbc1SBarry Smith PetscErrorCode MatRealPart_SeqBAIJ(Mat A)
236299cafbc1SBarry Smith {
236399cafbc1SBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
236499cafbc1SBarry Smith   PetscInt       i,nz = a->bs2*a->i[a->mbs];
2365dd6ea824SBarry Smith   MatScalar      *aa = a->a;
236699cafbc1SBarry Smith 
236799cafbc1SBarry Smith   PetscFunctionBegin;
236899cafbc1SBarry Smith   for (i=0; i<nz; i++) aa[i] = PetscRealPart(aa[i]);
236999cafbc1SBarry Smith   PetscFunctionReturn(0);
237099cafbc1SBarry Smith }
237199cafbc1SBarry Smith 
237299cafbc1SBarry Smith #undef __FUNCT__
237399cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_SeqBAIJ"
237499cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_SeqBAIJ(Mat A)
237599cafbc1SBarry Smith {
237699cafbc1SBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
237799cafbc1SBarry Smith   PetscInt       i,nz = a->bs2*a->i[a->mbs];
2378dd6ea824SBarry Smith   MatScalar      *aa = a->a;
237999cafbc1SBarry Smith 
238099cafbc1SBarry Smith   PetscFunctionBegin;
238199cafbc1SBarry Smith   for (i=0; i<nz; i++) aa[i] = PetscImaginaryPart(aa[i]);
238299cafbc1SBarry Smith   PetscFunctionReturn(0);
238399cafbc1SBarry Smith }
238499cafbc1SBarry Smith 
238599cafbc1SBarry Smith 
23862593348eSBarry Smith /* -------------------------------------------------------------------*/
2387cc2dc46cSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_SeqBAIJ,
2388cc2dc46cSBarry Smith        MatGetRow_SeqBAIJ,
2389cc2dc46cSBarry Smith        MatRestoreRow_SeqBAIJ,
2390cc2dc46cSBarry Smith        MatMult_SeqBAIJ_N,
239197304618SKris Buschelman /* 4*/ MatMultAdd_SeqBAIJ_N,
23927c922b88SBarry Smith        MatMultTranspose_SeqBAIJ,
23937c922b88SBarry Smith        MatMultTransposeAdd_SeqBAIJ,
2394cc2dc46cSBarry Smith        MatSolve_SeqBAIJ_N,
2395cc2dc46cSBarry Smith        0,
2396cc2dc46cSBarry Smith        0,
239797304618SKris Buschelman /*10*/ 0,
2398cc2dc46cSBarry Smith        MatLUFactor_SeqBAIJ,
2399cc2dc46cSBarry Smith        0,
2400b6490206SBarry Smith        0,
2401f2501298SSatish Balay        MatTranspose_SeqBAIJ,
240297304618SKris Buschelman /*15*/ MatGetInfo_SeqBAIJ,
2403cc2dc46cSBarry Smith        MatEqual_SeqBAIJ,
2404cc2dc46cSBarry Smith        MatGetDiagonal_SeqBAIJ,
2405cc2dc46cSBarry Smith        MatDiagonalScale_SeqBAIJ,
2406cc2dc46cSBarry Smith        MatNorm_SeqBAIJ,
240797304618SKris Buschelman /*20*/ 0,
2408cc2dc46cSBarry Smith        MatAssemblyEnd_SeqBAIJ,
2409cc2dc46cSBarry Smith        0,
2410cc2dc46cSBarry Smith        MatSetOption_SeqBAIJ,
2411cc2dc46cSBarry Smith        MatZeroEntries_SeqBAIJ,
241297304618SKris Buschelman /*25*/ MatZeroRows_SeqBAIJ,
2413cc2dc46cSBarry Smith        MatLUFactorSymbolic_SeqBAIJ,
2414cc2dc46cSBarry Smith        MatLUFactorNumeric_SeqBAIJ_N,
2415c05c3958SHong Zhang        MatCholeskyFactorSymbolic_SeqBAIJ,
2416c05c3958SHong Zhang        MatCholeskyFactorNumeric_SeqBAIJ_N,
241797304618SKris Buschelman /*30*/ MatSetUpPreallocation_SeqBAIJ,
2418cc2dc46cSBarry Smith        MatILUFactorSymbolic_SeqBAIJ,
2419c05c3958SHong Zhang        MatICCFactorSymbolic_SeqBAIJ,
2420f2a5309cSSatish Balay        MatGetArray_SeqBAIJ,
2421f2a5309cSSatish Balay        MatRestoreArray_SeqBAIJ,
242297304618SKris Buschelman /*35*/ MatDuplicate_SeqBAIJ,
2423cc2dc46cSBarry Smith        0,
2424cc2dc46cSBarry Smith        0,
2425cc2dc46cSBarry Smith        MatILUFactor_SeqBAIJ,
2426cc2dc46cSBarry Smith        0,
242797304618SKris Buschelman /*40*/ MatAXPY_SeqBAIJ,
2428cc2dc46cSBarry Smith        MatGetSubMatrices_SeqBAIJ,
2429cc2dc46cSBarry Smith        MatIncreaseOverlap_SeqBAIJ,
2430cc2dc46cSBarry Smith        MatGetValues_SeqBAIJ,
24313c896bc6SHong Zhang        MatCopy_SeqBAIJ,
24328c07d4e3SBarry Smith /*45*/ 0,
2433cc2dc46cSBarry Smith        MatScale_SeqBAIJ,
2434cc2dc46cSBarry Smith        0,
2435cc2dc46cSBarry Smith        0,
2436cc2dc46cSBarry Smith        0,
2437521d7252SBarry Smith /*50*/ 0,
24383b2fbd54SBarry Smith        MatGetRowIJ_SeqBAIJ,
243992c4ed94SBarry Smith        MatRestoreRowIJ_SeqBAIJ,
2440cc2dc46cSBarry Smith        0,
2441cc2dc46cSBarry Smith        0,
244297304618SKris Buschelman /*55*/ 0,
2443cc2dc46cSBarry Smith        0,
2444cc2dc46cSBarry Smith        0,
2445cc2dc46cSBarry Smith        0,
2446d3825aa8SBarry Smith        MatSetValuesBlocked_SeqBAIJ,
244797304618SKris Buschelman /*60*/ MatGetSubMatrix_SeqBAIJ,
2448b9b97703SBarry Smith        MatDestroy_SeqBAIJ,
2449b9b97703SBarry Smith        MatView_SeqBAIJ,
2450357abbc8SBarry Smith        0,
2451273d9f13SBarry Smith        0,
245297304618SKris Buschelman /*65*/ 0,
2453273d9f13SBarry Smith        0,
2454273d9f13SBarry Smith        0,
2455273d9f13SBarry Smith        0,
2456273d9f13SBarry Smith        0,
2457985db425SBarry Smith /*70*/ MatGetRowMaxAbs_SeqBAIJ,
245897304618SKris Buschelman        MatConvert_Basic,
2459273d9f13SBarry Smith        0,
246097304618SKris Buschelman        0,
246197304618SKris Buschelman        0,
246297304618SKris Buschelman /*75*/ 0,
246397304618SKris Buschelman        0,
246497304618SKris Buschelman        0,
246597304618SKris Buschelman        0,
246697304618SKris Buschelman        0,
246797304618SKris Buschelman /*80*/ 0,
246897304618SKris Buschelman        0,
246997304618SKris Buschelman        0,
247097304618SKris Buschelman        0,
2471865e5f61SKris Buschelman        MatLoad_SeqBAIJ,
2472865e5f61SKris Buschelman /*85*/ 0,
2473b01c7715SBarry Smith        0,
2474b01c7715SBarry Smith        0,
2475b01c7715SBarry Smith        0,
2476865e5f61SKris Buschelman        0,
2477865e5f61SKris Buschelman /*90*/ 0,
2478865e5f61SKris Buschelman        0,
2479865e5f61SKris Buschelman        0,
2480865e5f61SKris Buschelman        0,
2481865e5f61SKris Buschelman        0,
2482865e5f61SKris Buschelman /*95*/ 0,
2483865e5f61SKris Buschelman        0,
2484865e5f61SKris Buschelman        0,
248599cafbc1SBarry Smith        0,
248699cafbc1SBarry Smith        0,
248799cafbc1SBarry Smith /*100*/0,
248899cafbc1SBarry Smith        0,
248999cafbc1SBarry Smith        0,
249099cafbc1SBarry Smith        0,
249199cafbc1SBarry Smith        0,
249299cafbc1SBarry Smith /*105*/0,
249399cafbc1SBarry Smith        MatRealPart_SeqBAIJ,
24942af78befSBarry Smith        MatImaginaryPart_SeqBAIJ,
24952af78befSBarry Smith        0,
24962af78befSBarry Smith        0,
24972af78befSBarry Smith /*110*/0,
24982af78befSBarry Smith        0,
24992af78befSBarry Smith        0,
25002af78befSBarry Smith        0,
25012af78befSBarry Smith        MatMissingDiagonal_SeqBAIJ
25022af78befSBarry Smith /*115*/
250399cafbc1SBarry Smith };
25042593348eSBarry Smith 
25053e90b805SBarry Smith EXTERN_C_BEGIN
25064a2ae208SSatish Balay #undef __FUNCT__
25074a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_SeqBAIJ"
2508be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_SeqBAIJ(Mat mat)
25093e90b805SBarry Smith {
25103e90b805SBarry Smith   Mat_SeqBAIJ    *aij = (Mat_SeqBAIJ *)mat->data;
2511899cda47SBarry Smith   PetscInt       nz = aij->i[mat->rmap.N]*mat->rmap.bs*aij->bs2;
2512dfbe8321SBarry Smith   PetscErrorCode ierr;
25133e90b805SBarry Smith 
25143e90b805SBarry Smith   PetscFunctionBegin;
25153e90b805SBarry Smith   if (aij->nonew != 1) {
2516512a5fc5SBarry Smith     SETERRQ(PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first");
25173e90b805SBarry Smith   }
25183e90b805SBarry Smith 
25193e90b805SBarry Smith   /* allocate space for values if not already there */
25203e90b805SBarry Smith   if (!aij->saved_values) {
252187828ca2SBarry Smith     ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&aij->saved_values);CHKERRQ(ierr);
25223e90b805SBarry Smith   }
25233e90b805SBarry Smith 
25243e90b805SBarry Smith   /* copy values over */
252587828ca2SBarry Smith   ierr = PetscMemcpy(aij->saved_values,aij->a,nz*sizeof(PetscScalar));CHKERRQ(ierr);
25263e90b805SBarry Smith   PetscFunctionReturn(0);
25273e90b805SBarry Smith }
25283e90b805SBarry Smith EXTERN_C_END
25293e90b805SBarry Smith 
25303e90b805SBarry Smith EXTERN_C_BEGIN
25314a2ae208SSatish Balay #undef __FUNCT__
25324a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_SeqBAIJ"
2533be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_SeqBAIJ(Mat mat)
25343e90b805SBarry Smith {
25353e90b805SBarry Smith   Mat_SeqBAIJ    *aij = (Mat_SeqBAIJ *)mat->data;
25366849ba73SBarry Smith   PetscErrorCode ierr;
2537899cda47SBarry Smith   PetscInt       nz = aij->i[mat->rmap.N]*mat->rmap.bs*aij->bs2;
25383e90b805SBarry Smith 
25393e90b805SBarry Smith   PetscFunctionBegin;
25403e90b805SBarry Smith   if (aij->nonew != 1) {
2541512a5fc5SBarry Smith     SETERRQ(PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first");
25423e90b805SBarry Smith   }
25433e90b805SBarry Smith   if (!aij->saved_values) {
2544634064b4SBarry Smith     SETERRQ(PETSC_ERR_ORDER,"Must call MatStoreValues(A);first");
25453e90b805SBarry Smith   }
25463e90b805SBarry Smith 
25473e90b805SBarry Smith   /* copy values over */
254887828ca2SBarry Smith   ierr = PetscMemcpy(aij->a,aij->saved_values,nz*sizeof(PetscScalar));CHKERRQ(ierr);
25493e90b805SBarry Smith   PetscFunctionReturn(0);
25503e90b805SBarry Smith }
25513e90b805SBarry Smith EXTERN_C_END
25523e90b805SBarry Smith 
2553273d9f13SBarry Smith EXTERN_C_BEGIN
2554f69a0ea3SMatthew Knepley extern PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_SeqBAIJ_SeqAIJ(Mat, MatType,MatReuse,Mat*);
2555f69a0ea3SMatthew Knepley extern PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_SeqBAIJ_SeqSBAIJ(Mat, MatType,MatReuse,Mat*);
2556273d9f13SBarry Smith EXTERN_C_END
2557273d9f13SBarry Smith 
2558273d9f13SBarry Smith EXTERN_C_BEGIN
25594a2ae208SSatish Balay #undef __FUNCT__
2560a23d5eceSKris Buschelman #define __FUNCT__ "MatSeqBAIJSetPreallocation_SeqBAIJ"
2561be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJSetPreallocation_SeqBAIJ(Mat B,PetscInt bs,PetscInt nz,PetscInt *nnz)
2562a23d5eceSKris Buschelman {
2563a23d5eceSKris Buschelman   Mat_SeqBAIJ    *b;
25646849ba73SBarry Smith   PetscErrorCode ierr;
2565a96a251dSBarry Smith   PetscInt       i,mbs,nbs,bs2,newbs = bs;
2566ab93d7beSBarry Smith   PetscTruth     flg,skipallocation = PETSC_FALSE;
2567a23d5eceSKris Buschelman 
2568a23d5eceSKris Buschelman   PetscFunctionBegin;
2569a23d5eceSKris Buschelman 
2570ab93d7beSBarry Smith   if (nz == MAT_SKIP_ALLOCATION) {
2571ab93d7beSBarry Smith     skipallocation = PETSC_TRUE;
2572ab93d7beSBarry Smith     nz             = 0;
2573ab93d7beSBarry Smith   }
25748c07d4e3SBarry Smith 
25757adad957SLisandro Dalcin   ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Block options for SEQBAIJ matrix 1","Mat");CHKERRQ(ierr);
257617667f90SBarry Smith     ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatSeqBAIJSetPreallocation",bs,&newbs,PETSC_NULL);CHKERRQ(ierr);
25778c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
25788c07d4e3SBarry Smith 
2579a23d5eceSKris Buschelman   if (nnz && newbs != bs) {
2580634064b4SBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONG,"Cannot change blocksize from command line if setting nnz");
2581a23d5eceSKris Buschelman   }
2582a23d5eceSKris Buschelman   bs   = newbs;
2583a23d5eceSKris Buschelman 
2584899cda47SBarry Smith   B->rmap.bs = B->cmap.bs = bs;
25856148ca0dSBarry Smith   ierr = PetscMapSetUp(&B->rmap);CHKERRQ(ierr);
25866148ca0dSBarry Smith   ierr = PetscMapSetUp(&B->cmap);CHKERRQ(ierr);
2587899cda47SBarry Smith 
2588899cda47SBarry Smith   B->preallocated = PETSC_TRUE;
2589899cda47SBarry Smith 
2590899cda47SBarry Smith   mbs  = B->rmap.n/bs;
2591899cda47SBarry Smith   nbs  = B->cmap.n/bs;
2592a23d5eceSKris Buschelman   bs2  = bs*bs;
2593a23d5eceSKris Buschelman 
2594899cda47SBarry Smith   if (mbs*bs!=B->rmap.n || nbs*bs!=B->cmap.n) {
2595899cda47SBarry Smith     SETERRQ3(PETSC_ERR_ARG_SIZ,"Number rows %D, cols %D must be divisible by blocksize %D",B->rmap.N,B->cmap.n,bs);
2596a23d5eceSKris Buschelman   }
2597a23d5eceSKris Buschelman 
2598a23d5eceSKris Buschelman   if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 5;
259977431f27SBarry Smith   if (nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"nz cannot be less than 0: value %D",nz);
2600a23d5eceSKris Buschelman   if (nnz) {
2601a23d5eceSKris Buschelman     for (i=0; i<mbs; i++) {
260277431f27SBarry Smith       if (nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"nnz cannot be less than 0: local row %D value %D",i,nnz[i]);
260377431f27SBarry Smith       if (nnz[i] > nbs) SETERRQ3(PETSC_ERR_ARG_OUTOFRANGE,"nnz cannot be greater than block row length: local row %D value %D rowlength %D",i,nnz[i],nbs);
2604a23d5eceSKris Buschelman     }
2605a23d5eceSKris Buschelman   }
2606a23d5eceSKris Buschelman 
2607a23d5eceSKris Buschelman   b       = (Mat_SeqBAIJ*)B->data;
26087adad957SLisandro Dalcin   ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Optimize options for SEQBAIJ matrix 2 ","Mat");CHKERRQ(ierr);
26098c07d4e3SBarry Smith     ierr = PetscOptionsTruth("-mat_no_unroll","Do not optimize for block size (slow)",PETSC_NULL,PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr);
26108c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
26118c07d4e3SBarry Smith 
2612a23d5eceSKris Buschelman   B->ops->solve               = MatSolve_SeqBAIJ_Update;
2613a23d5eceSKris Buschelman   B->ops->solvetranspose      = MatSolveTranspose_SeqBAIJ_Update;
2614a23d5eceSKris Buschelman   if (!flg) {
2615a23d5eceSKris Buschelman     switch (bs) {
2616a23d5eceSKris Buschelman     case 1:
2617a23d5eceSKris Buschelman       B->ops->lufactornumeric = MatLUFactorNumeric_SeqBAIJ_1;
2618a23d5eceSKris Buschelman       B->ops->mult            = MatMult_SeqBAIJ_1;
2619a23d5eceSKris Buschelman       B->ops->multadd         = MatMultAdd_SeqBAIJ_1;
26206d3beeddSMatthew Knepley       B->ops->pbrelax         = MatPBRelax_SeqBAIJ_1;
2621a23d5eceSKris Buschelman       break;
2622a23d5eceSKris Buschelman     case 2:
2623a23d5eceSKris Buschelman       B->ops->lufactornumeric = MatLUFactorNumeric_SeqBAIJ_2;
2624a23d5eceSKris Buschelman       B->ops->mult            = MatMult_SeqBAIJ_2;
2625a23d5eceSKris Buschelman       B->ops->multadd         = MatMultAdd_SeqBAIJ_2;
2626b01c7715SBarry Smith       B->ops->pbrelax         = MatPBRelax_SeqBAIJ_2;
2627a23d5eceSKris Buschelman       break;
2628a23d5eceSKris Buschelman     case 3:
2629a23d5eceSKris Buschelman       B->ops->lufactornumeric = MatLUFactorNumeric_SeqBAIJ_3;
2630a23d5eceSKris Buschelman       B->ops->mult            = MatMult_SeqBAIJ_3;
2631a23d5eceSKris Buschelman       B->ops->multadd         = MatMultAdd_SeqBAIJ_3;
2632b01c7715SBarry Smith       B->ops->pbrelax         = MatPBRelax_SeqBAIJ_3;
2633a23d5eceSKris Buschelman       break;
2634a23d5eceSKris Buschelman     case 4:
2635a23d5eceSKris Buschelman       B->ops->lufactornumeric = MatLUFactorNumeric_SeqBAIJ_4;
2636a23d5eceSKris Buschelman       B->ops->mult            = MatMult_SeqBAIJ_4;
2637a23d5eceSKris Buschelman       B->ops->multadd         = MatMultAdd_SeqBAIJ_4;
2638b01c7715SBarry Smith       B->ops->pbrelax         = MatPBRelax_SeqBAIJ_4;
2639a23d5eceSKris Buschelman       break;
2640a23d5eceSKris Buschelman     case 5:
2641a23d5eceSKris Buschelman       B->ops->lufactornumeric = MatLUFactorNumeric_SeqBAIJ_5;
2642a23d5eceSKris Buschelman       B->ops->mult            = MatMult_SeqBAIJ_5;
2643a23d5eceSKris Buschelman       B->ops->multadd         = MatMultAdd_SeqBAIJ_5;
2644b01c7715SBarry Smith       B->ops->pbrelax         = MatPBRelax_SeqBAIJ_5;
2645a23d5eceSKris Buschelman       break;
2646a23d5eceSKris Buschelman     case 6:
2647a23d5eceSKris Buschelman       B->ops->lufactornumeric = MatLUFactorNumeric_SeqBAIJ_6;
2648a23d5eceSKris Buschelman       B->ops->mult            = MatMult_SeqBAIJ_6;
2649a23d5eceSKris Buschelman       B->ops->multadd         = MatMultAdd_SeqBAIJ_6;
26506d3beeddSMatthew Knepley       B->ops->pbrelax         = MatPBRelax_SeqBAIJ_6;
2651a23d5eceSKris Buschelman       break;
2652a23d5eceSKris Buschelman     case 7:
2653a23d5eceSKris Buschelman       B->ops->lufactornumeric = MatLUFactorNumeric_SeqBAIJ_7;
2654a23d5eceSKris Buschelman       B->ops->mult            = MatMult_SeqBAIJ_7;
2655a23d5eceSKris Buschelman       B->ops->multadd         = MatMultAdd_SeqBAIJ_7;
26566d3beeddSMatthew Knepley       B->ops->pbrelax         = MatPBRelax_SeqBAIJ_7;
2657a23d5eceSKris Buschelman       break;
2658a23d5eceSKris Buschelman     default:
2659a23d5eceSKris Buschelman       B->ops->lufactornumeric = MatLUFactorNumeric_SeqBAIJ_N;
2660a23d5eceSKris Buschelman       B->ops->mult            = MatMult_SeqBAIJ_N;
2661a23d5eceSKris Buschelman       B->ops->multadd         = MatMultAdd_SeqBAIJ_N;
2662a23d5eceSKris Buschelman       break;
2663a23d5eceSKris Buschelman     }
2664a23d5eceSKris Buschelman   }
2665899cda47SBarry Smith   B->rmap.bs      = bs;
2666a23d5eceSKris Buschelman   b->mbs     = mbs;
2667a23d5eceSKris Buschelman   b->nbs     = nbs;
2668ab93d7beSBarry Smith   if (!skipallocation) {
26692ee49352SLisandro Dalcin     if (!b->imax) {
2670ab93d7beSBarry Smith       ierr = PetscMalloc2(mbs,PetscInt,&b->imax,mbs,PetscInt,&b->ilen);CHKERRQ(ierr);
26712ee49352SLisandro Dalcin     }
2672ab93d7beSBarry Smith     /* b->ilen will count nonzeros in each block row so far. */
2673ab93d7beSBarry Smith     for (i=0; i<mbs; i++) { b->ilen[i] = 0;}
2674a23d5eceSKris Buschelman     if (!nnz) {
2675a23d5eceSKris Buschelman       if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 5;
2676a23d5eceSKris Buschelman       else if (nz <= 0)        nz = 1;
2677a23d5eceSKris Buschelman       for (i=0; i<mbs; i++) b->imax[i] = nz;
2678a23d5eceSKris Buschelman       nz = nz*mbs;
2679a23d5eceSKris Buschelman     } else {
2680a23d5eceSKris Buschelman       nz = 0;
2681a23d5eceSKris Buschelman       for (i=0; i<mbs; i++) {b->imax[i] = nnz[i]; nz += nnz[i];}
2682a23d5eceSKris Buschelman     }
2683a23d5eceSKris Buschelman 
2684a23d5eceSKris Buschelman     /* allocate the matrix space */
26852ee49352SLisandro Dalcin     ierr = MatSeqXAIJFreeAIJ(B,&b->a,&b->j,&b->i);CHKERRQ(ierr);
2686899cda47SBarry Smith     ierr = PetscMalloc3(bs2*nz,PetscScalar,&b->a,nz,PetscInt,&b->j,B->rmap.N+1,PetscInt,&b->i);CHKERRQ(ierr);
26872ee49352SLisandro Dalcin     ierr = PetscLogObjectMemory(B,(B->rmap.N+1)*sizeof(PetscInt)+nz*(bs2*sizeof(PetscScalar)+sizeof(PetscInt)));CHKERRQ(ierr);
2688a23d5eceSKris Buschelman     ierr  = PetscMemzero(b->a,nz*bs2*sizeof(MatScalar));CHKERRQ(ierr);
2689c1ac3661SBarry Smith     ierr  = PetscMemzero(b->j,nz*sizeof(PetscInt));CHKERRQ(ierr);
2690a23d5eceSKris Buschelman     b->singlemalloc = PETSC_TRUE;
2691a23d5eceSKris Buschelman     b->i[0] = 0;
2692a23d5eceSKris Buschelman     for (i=1; i<mbs+1; i++) {
2693a23d5eceSKris Buschelman       b->i[i] = b->i[i-1] + b->imax[i-1];
2694a23d5eceSKris Buschelman     }
2695e6b907acSBarry Smith     b->free_a     = PETSC_TRUE;
2696e6b907acSBarry Smith     b->free_ij    = PETSC_TRUE;
2697e811da20SHong Zhang   } else {
2698e6b907acSBarry Smith     b->free_a     = PETSC_FALSE;
2699e6b907acSBarry Smith     b->free_ij    = PETSC_FALSE;
2700ab93d7beSBarry Smith   }
2701a23d5eceSKris Buschelman 
2702899cda47SBarry Smith   B->rmap.bs          = bs;
2703a23d5eceSKris Buschelman   b->bs2              = bs2;
2704a23d5eceSKris Buschelman   b->mbs              = mbs;
2705a23d5eceSKris Buschelman   b->nz               = 0;
2706a23d5eceSKris Buschelman   b->maxnz            = nz*bs2;
2707a23d5eceSKris Buschelman   B->info.nz_unneeded = (PetscReal)b->maxnz;
2708a23d5eceSKris Buschelman   PetscFunctionReturn(0);
2709a23d5eceSKris Buschelman }
2710a23d5eceSKris Buschelman EXTERN_C_END
2711a23d5eceSKris Buschelman 
2712b24902e0SBarry Smith EXTERN_C_BEGIN
2713725b52f3SLisandro Dalcin #undef __FUNCT__
2714725b52f3SLisandro Dalcin #define __FUNCT__ "MatSeqBAIJSetPreallocationCSR_SeqBAIJ"
2715*cf12db73SBarry Smith PetscErrorCode MatSeqBAIJSetPreallocationCSR_SeqBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[])
2716725b52f3SLisandro Dalcin {
2717725b52f3SLisandro Dalcin   PetscInt       i,m,nz,nz_max=0,*nnz;
2718725b52f3SLisandro Dalcin   PetscScalar    *values=0;
2719725b52f3SLisandro Dalcin   PetscErrorCode ierr;
2720725b52f3SLisandro Dalcin 
2721725b52f3SLisandro Dalcin   PetscFunctionBegin;
2722725b52f3SLisandro Dalcin 
2723725b52f3SLisandro Dalcin   if (bs < 1) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs);
2724725b52f3SLisandro Dalcin   B->rmap.bs = bs;
2725725b52f3SLisandro Dalcin   B->cmap.bs = bs;
2726725b52f3SLisandro Dalcin   ierr = PetscMapSetUp(&B->rmap);CHKERRQ(ierr);
2727725b52f3SLisandro Dalcin   ierr = PetscMapSetUp(&B->cmap);CHKERRQ(ierr);
2728725b52f3SLisandro Dalcin   m = B->rmap.n/bs;
2729725b52f3SLisandro Dalcin 
2730*cf12db73SBarry Smith   if (ii[0] != 0) { SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %D",ii[0]); }
2731725b52f3SLisandro Dalcin   ierr = PetscMalloc((m+1) * sizeof(PetscInt), &nnz);CHKERRQ(ierr);
2732725b52f3SLisandro Dalcin   for(i=0; i<m; i++) {
2733*cf12db73SBarry Smith     nz = ii[i+1]- ii[i];
2734725b52f3SLisandro Dalcin     if (nz < 0) { SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE, "Local row %D has a negative number of columns %D",i,nz); }
2735725b52f3SLisandro Dalcin     nz_max = PetscMax(nz_max, nz);
2736725b52f3SLisandro Dalcin     nnz[i] = nz;
2737725b52f3SLisandro Dalcin   }
2738725b52f3SLisandro Dalcin   ierr = MatSeqBAIJSetPreallocation(B,bs,0,nnz);CHKERRQ(ierr);
2739725b52f3SLisandro Dalcin   ierr = PetscFree(nnz);CHKERRQ(ierr);
2740725b52f3SLisandro Dalcin 
2741725b52f3SLisandro Dalcin   values = (PetscScalar*)V;
2742725b52f3SLisandro Dalcin   if (!values) {
2743725b52f3SLisandro Dalcin     ierr = PetscMalloc(bs*bs*(nz_max+1)*sizeof(PetscScalar),&values);CHKERRQ(ierr);
2744725b52f3SLisandro Dalcin     ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr);
2745725b52f3SLisandro Dalcin   }
2746725b52f3SLisandro Dalcin   for (i=0; i<m; i++) {
2747*cf12db73SBarry Smith     PetscInt          ncols  = ii[i+1] - ii[i];
2748*cf12db73SBarry Smith     const PetscInt    *icols = jj + ii[i];
2749*cf12db73SBarry Smith     const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0);
2750725b52f3SLisandro Dalcin     ierr = MatSetValuesBlocked_SeqBAIJ(B,1,&i,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr);
2751725b52f3SLisandro Dalcin   }
2752725b52f3SLisandro Dalcin   if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); }
2753725b52f3SLisandro Dalcin   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2754725b52f3SLisandro Dalcin   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2755725b52f3SLisandro Dalcin 
2756725b52f3SLisandro Dalcin   PetscFunctionReturn(0);
2757725b52f3SLisandro Dalcin }
2758725b52f3SLisandro Dalcin EXTERN_C_END
2759725b52f3SLisandro Dalcin 
2760725b52f3SLisandro Dalcin 
2761207126cbSBarry Smith EXTERN_C_BEGIN
2762b24902e0SBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactor_seqbaij_petsc(Mat,MatFactorType,Mat*);
2763b24902e0SBarry Smith EXTERN_C_END
2764b24902e0SBarry Smith 
27650bad9183SKris Buschelman /*MC
2766fafad747SKris Buschelman    MATSEQBAIJ - MATSEQBAIJ = "seqbaij" - A matrix type to be used for sequential block sparse matrices, based on
27670bad9183SKris Buschelman    block sparse compressed row format.
27680bad9183SKris Buschelman 
27690bad9183SKris Buschelman    Options Database Keys:
27700bad9183SKris Buschelman . -mat_type seqbaij - sets the matrix type to "seqbaij" during a call to MatSetFromOptions()
27710bad9183SKris Buschelman 
27720bad9183SKris Buschelman   Level: beginner
27730bad9183SKris Buschelman 
2774f0c06035SSatish Balay .seealso: MatCreateSeqBAIJ()
27750bad9183SKris Buschelman M*/
27760bad9183SKris Buschelman 
2777b24902e0SBarry Smith 
2778a23d5eceSKris Buschelman EXTERN_C_BEGIN
2779a23d5eceSKris Buschelman #undef __FUNCT__
27804a2ae208SSatish Balay #define __FUNCT__ "MatCreate_SeqBAIJ"
2781be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SeqBAIJ(Mat B)
27822593348eSBarry Smith {
2783dfbe8321SBarry Smith   PetscErrorCode ierr;
2784c1ac3661SBarry Smith   PetscMPIInt    size;
2785b6490206SBarry Smith   Mat_SeqBAIJ    *b;
27863b2fbd54SBarry Smith 
27873a40ed3dSBarry Smith   PetscFunctionBegin;
27887adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)B)->comm,&size);CHKERRQ(ierr);
278929bbc08cSBarry Smith   if (size > 1) SETERRQ(PETSC_ERR_ARG_WRONG,"Comm must be of size 1");
2790b6490206SBarry Smith 
279138f2d2fdSLisandro Dalcin   ierr    = PetscNewLog(B,Mat_SeqBAIJ,&b);CHKERRQ(ierr);
2792b0a32e0cSBarry Smith   B->data = (void*)b;
2793549d3d68SSatish Balay   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
279490f02eecSBarry Smith   B->mapping          = 0;
27952593348eSBarry Smith   b->row              = 0;
27962593348eSBarry Smith   b->col              = 0;
2797e51c0b9cSSatish Balay   b->icol             = 0;
27982593348eSBarry Smith   b->reallocs         = 0;
27993e90b805SBarry Smith   b->saved_values     = 0;
28002593348eSBarry Smith 
2801c4992f7dSBarry Smith   b->roworiented      = PETSC_TRUE;
28022593348eSBarry Smith   b->nonew            = 0;
28032593348eSBarry Smith   b->diag             = 0;
28042593348eSBarry Smith   b->solve_work       = 0;
2805de6a44a3SBarry Smith   b->mult_work        = 0;
28062a1b7f2aSHong Zhang   B->spptr            = 0;
28070e6d2581SBarry Smith   B->info.nz_unneeded = (PetscReal)b->maxnz;
2808883fce79SBarry Smith   b->keepzeroedrows   = PETSC_FALSE;
2809c4319e64SHong Zhang   b->xtoy              = 0;
2810c4319e64SHong Zhang   b->XtoY              = 0;
281173e7a558SHong Zhang   b->compressedrow.use     = PETSC_FALSE;
281226e093fcSHong Zhang   b->compressedrow.nrows   = 0;
281373e7a558SHong Zhang   b->compressedrow.i       = PETSC_NULL;
281473e7a558SHong Zhang   b->compressedrow.rindex  = PETSC_NULL;
281573e7a558SHong Zhang   b->compressedrow.checked = PETSC_FALSE;
281688e51ccdSHong Zhang   B->same_nonzero          = PETSC_FALSE;
28174e220ebcSLois Curfman McInnes 
2818b24902e0SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_seqbaij_petsc_C",
2819b24902e0SBarry Smith                                      "MatGetFactor_seqbaij_petsc",
2820b24902e0SBarry Smith                                      MatGetFactor_seqbaij_petsc);CHKERRQ(ierr);
282143516a2dSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSeqBAIJInvertBlockDiagonal_C",
282243516a2dSKris Buschelman                                      "MatInvertBlockDiagonal_SeqBAIJ",
282343516a2dSKris Buschelman                                       MatInvertBlockDiagonal_SeqBAIJ);CHKERRQ(ierr);
2824f1af5d2fSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
28253e90b805SBarry Smith                                      "MatStoreValues_SeqBAIJ",
2826bc4b532fSSatish Balay                                       MatStoreValues_SeqBAIJ);CHKERRQ(ierr);
2827f1af5d2fSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
28283e90b805SBarry Smith                                      "MatRetrieveValues_SeqBAIJ",
2829bc4b532fSSatish Balay                                       MatRetrieveValues_SeqBAIJ);CHKERRQ(ierr);
2830f1af5d2fSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSeqBAIJSetColumnIndices_C",
283127a8da17SBarry Smith                                      "MatSeqBAIJSetColumnIndices_SeqBAIJ",
2832bc4b532fSSatish Balay                                       MatSeqBAIJSetColumnIndices_SeqBAIJ);CHKERRQ(ierr);
2833a6175056SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_seqbaij_seqaij_C",
2834273d9f13SBarry Smith                                      "MatConvert_SeqBAIJ_SeqAIJ",
2835273d9f13SBarry Smith                                       MatConvert_SeqBAIJ_SeqAIJ);CHKERRQ(ierr);
2836a0e1a404SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_seqbaij_seqsbaij_C",
2837a0e1a404SHong Zhang                                      "MatConvert_SeqBAIJ_SeqSBAIJ",
2838a0e1a404SHong Zhang                                       MatConvert_SeqBAIJ_SeqSBAIJ);CHKERRQ(ierr);
2839a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSeqBAIJSetPreallocation_C",
2840a23d5eceSKris Buschelman                                      "MatSeqBAIJSetPreallocation_SeqBAIJ",
2841a23d5eceSKris Buschelman                                       MatSeqBAIJSetPreallocation_SeqBAIJ);CHKERRQ(ierr);
2842725b52f3SLisandro Dalcin   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSeqBAIJSetPreallocationCSR_C",
2843725b52f3SLisandro Dalcin                                      "MatSeqBAIJSetPreallocationCSR_SeqBAIJ",
2844725b52f3SLisandro Dalcin                                       MatSeqBAIJSetPreallocationCSR_SeqBAIJ);CHKERRQ(ierr);
284517667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATSEQBAIJ);CHKERRQ(ierr);
28463a40ed3dSBarry Smith   PetscFunctionReturn(0);
28472593348eSBarry Smith }
2848273d9f13SBarry Smith EXTERN_C_END
28492593348eSBarry Smith 
28504a2ae208SSatish Balay #undef __FUNCT__
2851b24902e0SBarry Smith #define __FUNCT__ "MatDuplicateNoCreate_SeqBAIJ"
2852b24902e0SBarry Smith PetscErrorCode MatDuplicateNoCreate_SeqBAIJ(Mat A,MatDuplicateOption cpvalues,Mat *B)
28532593348eSBarry Smith {
2854b24902e0SBarry Smith   Mat            C = *B;
2855b24902e0SBarry Smith   Mat_SeqBAIJ    *c = (Mat_SeqBAIJ*)C->data,*a = (Mat_SeqBAIJ*)A->data;
28566849ba73SBarry Smith   PetscErrorCode ierr;
2857a96a251dSBarry Smith   PetscInt       i,mbs = a->mbs,nz = a->nz,bs2 = a->bs2;
2858de6a44a3SBarry Smith 
28593a40ed3dSBarry Smith   PetscFunctionBegin;
286029bbc08cSBarry Smith   if (a->i[mbs] != nz) SETERRQ(PETSC_ERR_PLIB,"Corrupt matrix");
28612593348eSBarry Smith 
286233b91e9fSSatish Balay   ierr = PetscMalloc2(mbs,PetscInt,&c->imax,mbs,PetscInt,&c->ilen);CHKERRQ(ierr);
2863b6490206SBarry Smith   for (i=0; i<mbs; i++) {
28642593348eSBarry Smith     c->imax[i] = a->imax[i];
28652593348eSBarry Smith     c->ilen[i] = a->ilen[i];
28662593348eSBarry Smith   }
28672593348eSBarry Smith 
28682593348eSBarry Smith   /* allocate the matrix space */
2869a96a251dSBarry Smith   ierr = PetscMalloc3(bs2*nz,PetscScalar,&c->a,nz,PetscInt,&c->j,mbs+1,PetscInt,&c->i);CHKERRQ(ierr);
2870c4992f7dSBarry Smith   c->singlemalloc = PETSC_TRUE;
2871c1ac3661SBarry Smith   ierr = PetscMemcpy(c->i,a->i,(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr);
2872b6490206SBarry Smith   if (mbs > 0) {
2873c1ac3661SBarry Smith     ierr = PetscMemcpy(c->j,a->j,nz*sizeof(PetscInt));CHKERRQ(ierr);
28742e8a6d31SBarry Smith     if (cpvalues == MAT_COPY_VALUES) {
2875549d3d68SSatish Balay       ierr = PetscMemcpy(c->a,a->a,bs2*nz*sizeof(MatScalar));CHKERRQ(ierr);
28762e8a6d31SBarry Smith     } else {
2877549d3d68SSatish Balay       ierr = PetscMemzero(c->a,bs2*nz*sizeof(MatScalar));CHKERRQ(ierr);
28782593348eSBarry Smith     }
28792593348eSBarry Smith   }
28802593348eSBarry Smith   c->roworiented = a->roworiented;
28812593348eSBarry Smith   c->nonew       = a->nonew;
28825c9eb25fSBarry Smith   ierr = PetscMapCopy(((PetscObject)A)->comm,&A->rmap,&C->rmap);CHKERRQ(ierr);
28835c9eb25fSBarry Smith   ierr = PetscMapCopy(((PetscObject)A)->comm,&A->cmap,&C->cmap);CHKERRQ(ierr);
28845c9eb25fSBarry Smith   c->bs2         = a->bs2;
28855c9eb25fSBarry Smith   c->mbs         = a->mbs;
28865c9eb25fSBarry Smith   c->nbs         = a->nbs;
28872593348eSBarry Smith 
28882593348eSBarry Smith   if (a->diag) {
2889c1ac3661SBarry Smith     ierr = PetscMalloc((mbs+1)*sizeof(PetscInt),&c->diag);CHKERRQ(ierr);
289052e6d16bSBarry Smith     ierr = PetscLogObjectMemory(C,(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr);
2891b6490206SBarry Smith     for (i=0; i<mbs; i++) {
28922593348eSBarry Smith       c->diag[i] = a->diag[i];
28932593348eSBarry Smith     }
289498305bb5SBarry Smith   } else c->diag        = 0;
28952593348eSBarry Smith   c->nz                 = a->nz;
28962593348eSBarry Smith   c->maxnz              = a->maxnz;
28972593348eSBarry Smith   c->solve_work         = 0;
28987fc0212eSBarry Smith   c->mult_work          = 0;
2899e6b907acSBarry Smith   c->free_a             = PETSC_TRUE;
2900e6b907acSBarry Smith   c->free_ij            = PETSC_TRUE;
2901273d9f13SBarry Smith   C->preallocated       = PETSC_TRUE;
2902273d9f13SBarry Smith   C->assembled          = PETSC_TRUE;
290388e51ccdSHong Zhang 
290488e51ccdSHong Zhang   c->compressedrow.use     = a->compressedrow.use;
290588e51ccdSHong Zhang   c->compressedrow.nrows   = a->compressedrow.nrows;
290688e51ccdSHong Zhang   c->compressedrow.checked = a->compressedrow.checked;
290788e51ccdSHong Zhang   if ( a->compressedrow.checked && a->compressedrow.use){
290888e51ccdSHong Zhang     i = a->compressedrow.nrows;
290988e51ccdSHong Zhang     ierr = PetscMalloc((2*i+1)*sizeof(PetscInt),&c->compressedrow.i);CHKERRQ(ierr);
291088e51ccdSHong Zhang     c->compressedrow.rindex = c->compressedrow.i + i + 1;
291188e51ccdSHong Zhang     ierr = PetscMemcpy(c->compressedrow.i,a->compressedrow.i,(i+1)*sizeof(PetscInt));CHKERRQ(ierr);
291288e51ccdSHong Zhang     ierr = PetscMemcpy(c->compressedrow.rindex,a->compressedrow.rindex,i*sizeof(PetscInt));CHKERRQ(ierr);
291388e51ccdSHong Zhang   } else {
291488e51ccdSHong Zhang     c->compressedrow.use    = PETSC_FALSE;
291588e51ccdSHong Zhang     c->compressedrow.i      = PETSC_NULL;
291688e51ccdSHong Zhang     c->compressedrow.rindex = PETSC_NULL;
291788e51ccdSHong Zhang   }
291888e51ccdSHong Zhang   C->same_nonzero = A->same_nonzero;
29192593348eSBarry Smith   *B = C;
29207adad957SLisandro Dalcin   ierr = PetscFListDuplicate(((PetscObject)A)->qlist,&((PetscObject)C)->qlist);CHKERRQ(ierr);
29213a40ed3dSBarry Smith   PetscFunctionReturn(0);
29222593348eSBarry Smith }
29232593348eSBarry Smith 
29244a2ae208SSatish Balay #undef __FUNCT__
2925b24902e0SBarry Smith #define __FUNCT__ "MatDuplicate_SeqBAIJ"
2926b24902e0SBarry Smith PetscErrorCode MatDuplicate_SeqBAIJ(Mat A,MatDuplicateOption cpvalues,Mat *B)
2927b24902e0SBarry Smith {
2928b24902e0SBarry Smith     PetscErrorCode ierr;
2929b24902e0SBarry Smith 
2930b24902e0SBarry Smith   PetscFunctionBegin;
29315c9eb25fSBarry Smith   ierr = MatCreate(((PetscObject)A)->comm,B);CHKERRQ(ierr);
29325c9eb25fSBarry Smith   ierr = MatSetSizes(*B,A->rmap.N,A->cmap.n,A->rmap.N,A->cmap.n);CHKERRQ(ierr);
29335c9eb25fSBarry Smith   ierr = MatSetType(*B,MATSEQBAIJ);CHKERRQ(ierr);
2934b24902e0SBarry Smith   ierr = MatDuplicateNoCreate_SeqBAIJ(A,cpvalues,B);
2935b24902e0SBarry Smith   PetscFunctionReturn(0);
2936b24902e0SBarry Smith }
2937b24902e0SBarry Smith 
2938b24902e0SBarry Smith #undef __FUNCT__
29394a2ae208SSatish Balay #define __FUNCT__ "MatLoad_SeqBAIJ"
2940a313700dSBarry Smith PetscErrorCode MatLoad_SeqBAIJ(PetscViewer viewer, const MatType type,Mat *A)
29412593348eSBarry Smith {
2942b6490206SBarry Smith   Mat_SeqBAIJ    *a;
29432593348eSBarry Smith   Mat            B;
29446849ba73SBarry Smith   PetscErrorCode ierr;
2945b24ad042SBarry Smith   PetscInt       i,nz,header[4],*rowlengths=0,M,N,bs=1;
2946c1ac3661SBarry Smith   PetscInt       *mask,mbs,*jj,j,rowcount,nzcount,k,*browlengths,maskcount;
2947c1ac3661SBarry Smith   PetscInt       kmax,jcount,block,idx,point,nzcountb,extra_rows;
2948c1ac3661SBarry Smith   PetscInt       *masked,nmask,tmp,bs2,ishift;
2949b24ad042SBarry Smith   PetscMPIInt    size;
2950b24ad042SBarry Smith   int            fd;
295187828ca2SBarry Smith   PetscScalar    *aa;
295219bcc07fSBarry Smith   MPI_Comm       comm = ((PetscObject)viewer)->comm;
29532593348eSBarry Smith 
29543a40ed3dSBarry Smith   PetscFunctionBegin;
29558c07d4e3SBarry Smith   ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading SEQBAIJ matrix","Mat");CHKERRQ(ierr);
29568c07d4e3SBarry Smith     ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr);
29578c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
2958de6a44a3SBarry Smith   bs2  = bs*bs;
2959b6490206SBarry Smith 
2960d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
296129bbc08cSBarry Smith   if (size > 1) SETERRQ(PETSC_ERR_ARG_WRONG,"view must have one processor");
2962b0a32e0cSBarry Smith   ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
29630752156aSBarry Smith   ierr = PetscBinaryRead(fd,header,4,PETSC_INT);CHKERRQ(ierr);
2964552e946dSBarry Smith   if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not Mat object");
29652593348eSBarry Smith   M = header[1]; N = header[2]; nz = header[3];
29662593348eSBarry Smith 
2967d64ed03dSBarry Smith   if (header[3] < 0) {
296829bbc08cSBarry Smith     SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as SeqBAIJ");
2969d64ed03dSBarry Smith   }
2970d64ed03dSBarry Smith 
297129bbc08cSBarry Smith   if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices");
297235aab85fSBarry Smith 
297335aab85fSBarry Smith   /*
297435aab85fSBarry Smith      This code adds extra rows to make sure the number of rows is
297535aab85fSBarry Smith     divisible by the blocksize
297635aab85fSBarry Smith   */
2977b6490206SBarry Smith   mbs        = M/bs;
297835aab85fSBarry Smith   extra_rows = bs - M + bs*(mbs);
297935aab85fSBarry Smith   if (extra_rows == bs) extra_rows = 0;
298035aab85fSBarry Smith   else                  mbs++;
298135aab85fSBarry Smith   if (extra_rows) {
29821e2582c4SBarry Smith     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
298335aab85fSBarry Smith   }
2984b6490206SBarry Smith 
29852593348eSBarry Smith   /* read in row lengths */
2986c1ac3661SBarry Smith   ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
29870752156aSBarry Smith   ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
298835aab85fSBarry Smith   for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
29892593348eSBarry Smith 
2990b6490206SBarry Smith   /* read in column indices */
2991c1ac3661SBarry Smith   ierr = PetscMalloc((nz+extra_rows)*sizeof(PetscInt),&jj);CHKERRQ(ierr);
29920752156aSBarry Smith   ierr = PetscBinaryRead(fd,jj,nz,PETSC_INT);CHKERRQ(ierr);
299335aab85fSBarry Smith   for (i=0; i<extra_rows; i++) jj[nz+i] = M+i;
2994b6490206SBarry Smith 
2995b6490206SBarry Smith   /* loop over row lengths determining block row lengths */
2996c1ac3661SBarry Smith   ierr     = PetscMalloc(mbs*sizeof(PetscInt),&browlengths);CHKERRQ(ierr);
2997c1ac3661SBarry Smith   ierr     = PetscMemzero(browlengths,mbs*sizeof(PetscInt));CHKERRQ(ierr);
2998c1ac3661SBarry Smith   ierr     = PetscMalloc(2*mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr);
2999c1ac3661SBarry Smith   ierr     = PetscMemzero(mask,mbs*sizeof(PetscInt));CHKERRQ(ierr);
300035aab85fSBarry Smith   masked   = mask + mbs;
3001b6490206SBarry Smith   rowcount = 0; nzcount = 0;
3002b6490206SBarry Smith   for (i=0; i<mbs; i++) {
300335aab85fSBarry Smith     nmask = 0;
3004b6490206SBarry Smith     for (j=0; j<bs; j++) {
3005b6490206SBarry Smith       kmax = rowlengths[rowcount];
3006b6490206SBarry Smith       for (k=0; k<kmax; k++) {
300735aab85fSBarry Smith         tmp = jj[nzcount++]/bs;
300835aab85fSBarry Smith         if (!mask[tmp]) {masked[nmask++] = tmp; mask[tmp] = 1;}
3009b6490206SBarry Smith       }
3010b6490206SBarry Smith       rowcount++;
3011b6490206SBarry Smith     }
301235aab85fSBarry Smith     browlengths[i] += nmask;
301335aab85fSBarry Smith     /* zero out the mask elements we set */
301435aab85fSBarry Smith     for (j=0; j<nmask; j++) mask[masked[j]] = 0;
3015b6490206SBarry Smith   }
3016b6490206SBarry Smith 
30172593348eSBarry Smith   /* create our matrix */
3018f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,&B);
3019f69a0ea3SMatthew Knepley   ierr = MatSetSizes(B,PETSC_DECIDE,PETSC_DECIDE,M+extra_rows,N+extra_rows);
302078ae41b4SKris Buschelman   ierr = MatSetType(B,type);CHKERRQ(ierr);
3021ab93d7beSBarry Smith   ierr = MatSeqBAIJSetPreallocation_SeqBAIJ(B,bs,0,browlengths);CHKERRQ(ierr);
3022b6490206SBarry Smith   a = (Mat_SeqBAIJ*)B->data;
30232593348eSBarry Smith 
30242593348eSBarry Smith   /* set matrix "i" values */
3025de6a44a3SBarry Smith   a->i[0] = 0;
3026b6490206SBarry Smith   for (i=1; i<= mbs; i++) {
3027b6490206SBarry Smith     a->i[i]      = a->i[i-1] + browlengths[i-1];
3028b6490206SBarry Smith     a->ilen[i-1] = browlengths[i-1];
30292593348eSBarry Smith   }
3030b6490206SBarry Smith   a->nz         = 0;
3031b6490206SBarry Smith   for (i=0; i<mbs; i++) a->nz += browlengths[i];
30322593348eSBarry Smith 
3033b6490206SBarry Smith   /* read in nonzero values */
303487828ca2SBarry Smith   ierr = PetscMalloc((nz+extra_rows)*sizeof(PetscScalar),&aa);CHKERRQ(ierr);
30350752156aSBarry Smith   ierr = PetscBinaryRead(fd,aa,nz,PETSC_SCALAR);CHKERRQ(ierr);
303635aab85fSBarry Smith   for (i=0; i<extra_rows; i++) aa[nz+i] = 1.0;
3037b6490206SBarry Smith 
3038b6490206SBarry Smith   /* set "a" and "j" values into matrix */
3039b6490206SBarry Smith   nzcount = 0; jcount = 0;
3040b6490206SBarry Smith   for (i=0; i<mbs; i++) {
3041b6490206SBarry Smith     nzcountb = nzcount;
304235aab85fSBarry Smith     nmask    = 0;
3043b6490206SBarry Smith     for (j=0; j<bs; j++) {
3044b6490206SBarry Smith       kmax = rowlengths[i*bs+j];
3045b6490206SBarry Smith       for (k=0; k<kmax; k++) {
304635aab85fSBarry Smith         tmp = jj[nzcount++]/bs;
304735aab85fSBarry Smith 	if (!mask[tmp]) { masked[nmask++] = tmp; mask[tmp] = 1;}
3048b6490206SBarry Smith       }
3049b6490206SBarry Smith     }
3050de6a44a3SBarry Smith     /* sort the masked values */
3051433994e6SBarry Smith     ierr = PetscSortInt(nmask,masked);CHKERRQ(ierr);
3052de6a44a3SBarry Smith 
3053b6490206SBarry Smith     /* set "j" values into matrix */
3054b6490206SBarry Smith     maskcount = 1;
305535aab85fSBarry Smith     for (j=0; j<nmask; j++) {
305635aab85fSBarry Smith       a->j[jcount++]  = masked[j];
3057de6a44a3SBarry Smith       mask[masked[j]] = maskcount++;
3058b6490206SBarry Smith     }
3059b6490206SBarry Smith     /* set "a" values into matrix */
3060de6a44a3SBarry Smith     ishift = bs2*a->i[i];
3061b6490206SBarry Smith     for (j=0; j<bs; j++) {
3062b6490206SBarry Smith       kmax = rowlengths[i*bs+j];
3063b6490206SBarry Smith       for (k=0; k<kmax; k++) {
3064de6a44a3SBarry Smith         tmp       = jj[nzcountb]/bs ;
3065de6a44a3SBarry Smith         block     = mask[tmp] - 1;
3066de6a44a3SBarry Smith         point     = jj[nzcountb] - bs*tmp;
3067de6a44a3SBarry Smith         idx       = ishift + bs2*block + j + bs*point;
3068375fe846SBarry Smith         a->a[idx] = (MatScalar)aa[nzcountb++];
3069b6490206SBarry Smith       }
3070b6490206SBarry Smith     }
307135aab85fSBarry Smith     /* zero out the mask elements we set */
307235aab85fSBarry Smith     for (j=0; j<nmask; j++) mask[masked[j]] = 0;
3073b6490206SBarry Smith   }
307429bbc08cSBarry Smith   if (jcount != a->nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Bad binary matrix");
3075b6490206SBarry Smith 
3076606d414cSSatish Balay   ierr = PetscFree(rowlengths);CHKERRQ(ierr);
3077606d414cSSatish Balay   ierr = PetscFree(browlengths);CHKERRQ(ierr);
3078606d414cSSatish Balay   ierr = PetscFree(aa);CHKERRQ(ierr);
3079606d414cSSatish Balay   ierr = PetscFree(jj);CHKERRQ(ierr);
3080606d414cSSatish Balay   ierr = PetscFree(mask);CHKERRQ(ierr);
3081b6490206SBarry Smith 
308278ae41b4SKris Buschelman   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
308378ae41b4SKris Buschelman   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
30849c01be13SBarry Smith   ierr = MatView_Private(B);CHKERRQ(ierr);
308578ae41b4SKris Buschelman 
308678ae41b4SKris Buschelman   *A = B;
30873a40ed3dSBarry Smith   PetscFunctionReturn(0);
30882593348eSBarry Smith }
30892593348eSBarry Smith 
30904a2ae208SSatish Balay #undef __FUNCT__
30914a2ae208SSatish Balay #define __FUNCT__ "MatCreateSeqBAIJ"
3092273d9f13SBarry Smith /*@C
3093273d9f13SBarry Smith    MatCreateSeqBAIJ - Creates a sparse matrix in block AIJ (block
3094273d9f13SBarry Smith    compressed row) format.  For good matrix assembly performance the
3095273d9f13SBarry Smith    user should preallocate the matrix storage by setting the parameter nz
3096273d9f13SBarry Smith    (or the array nnz).  By setting these parameters accurately, performance
3097273d9f13SBarry Smith    during matrix assembly can be increased by more than a factor of 50.
30982593348eSBarry Smith 
3099273d9f13SBarry Smith    Collective on MPI_Comm
3100273d9f13SBarry Smith 
3101273d9f13SBarry Smith    Input Parameters:
3102273d9f13SBarry Smith +  comm - MPI communicator, set to PETSC_COMM_SELF
3103273d9f13SBarry Smith .  bs - size of block
3104273d9f13SBarry Smith .  m - number of rows
3105273d9f13SBarry Smith .  n - number of columns
310635d8aa7fSBarry Smith .  nz - number of nonzero blocks  per block row (same for all rows)
310735d8aa7fSBarry Smith -  nnz - array containing the number of nonzero blocks in the various block rows
3108273d9f13SBarry Smith          (possibly different for each block row) or PETSC_NULL
3109273d9f13SBarry Smith 
3110273d9f13SBarry Smith    Output Parameter:
3111273d9f13SBarry Smith .  A - the matrix
3112273d9f13SBarry Smith 
3113175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
3114175b88e8SBarry Smith    MatXXXXSetPreallocation() paradgm instead of this routine directly. This is definitely
3115175b88e8SBarry Smith    true if you plan to use the external direct solvers such as SuperLU, MUMPS or Spooles.
3116175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
3117175b88e8SBarry Smith 
3118273d9f13SBarry Smith    Options Database Keys:
3119273d9f13SBarry Smith .   -mat_no_unroll - uses code that does not unroll the loops in the
3120273d9f13SBarry Smith                      block calculations (much slower)
3121273d9f13SBarry Smith .    -mat_block_size - size of the blocks to use
3122273d9f13SBarry Smith 
3123273d9f13SBarry Smith    Level: intermediate
3124273d9f13SBarry Smith 
3125273d9f13SBarry Smith    Notes:
3126d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
3127d1be2dadSMatthew Knepley 
312849a6f317SBarry Smith    If the nnz parameter is given then the nz parameter is ignored
312949a6f317SBarry Smith 
313035d8aa7fSBarry Smith    A nonzero block is any block that as 1 or more nonzeros in it
313135d8aa7fSBarry Smith 
3132273d9f13SBarry Smith    The block AIJ format is fully compatible with standard Fortran 77
3133273d9f13SBarry Smith    storage.  That is, the stored row and column indices can begin at
3134273d9f13SBarry Smith    either one (as in Fortran) or zero.  See the users' manual for details.
3135273d9f13SBarry Smith 
3136273d9f13SBarry Smith    Specify the preallocated storage with either nz or nnz (not both).
3137273d9f13SBarry Smith    Set nz=PETSC_DEFAULT and nnz=PETSC_NULL for PETSc to control dynamic memory
3138273d9f13SBarry Smith    allocation.  For additional details, see the users manual chapter on
3139273d9f13SBarry Smith    matrices.
3140273d9f13SBarry Smith 
3141273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatCreateMPIBAIJ()
3142273d9f13SBarry Smith @*/
3143be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateSeqBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt nz,const PetscInt nnz[],Mat *A)
3144273d9f13SBarry Smith {
3145dfbe8321SBarry Smith   PetscErrorCode ierr;
3146273d9f13SBarry Smith 
3147273d9f13SBarry Smith   PetscFunctionBegin;
3148f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
3149f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,m,n);CHKERRQ(ierr);
3150273d9f13SBarry Smith   ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr);
3151ab93d7beSBarry Smith   ierr = MatSeqBAIJSetPreallocation_SeqBAIJ(*A,bs,nz,(PetscInt*)nnz);CHKERRQ(ierr);
3152273d9f13SBarry Smith   PetscFunctionReturn(0);
3153273d9f13SBarry Smith }
3154273d9f13SBarry Smith 
31554a2ae208SSatish Balay #undef __FUNCT__
31564a2ae208SSatish Balay #define __FUNCT__ "MatSeqBAIJSetPreallocation"
3157273d9f13SBarry Smith /*@C
3158273d9f13SBarry Smith    MatSeqBAIJSetPreallocation - Sets the block size and expected nonzeros
3159273d9f13SBarry Smith    per row in the matrix. For good matrix assembly performance the
3160273d9f13SBarry Smith    user should preallocate the matrix storage by setting the parameter nz
3161273d9f13SBarry Smith    (or the array nnz).  By setting these parameters accurately, performance
3162273d9f13SBarry Smith    during matrix assembly can be increased by more than a factor of 50.
3163273d9f13SBarry Smith 
3164273d9f13SBarry Smith    Collective on MPI_Comm
3165273d9f13SBarry Smith 
3166273d9f13SBarry Smith    Input Parameters:
3167273d9f13SBarry Smith +  A - the matrix
3168273d9f13SBarry Smith .  bs - size of block
3169273d9f13SBarry Smith .  nz - number of block nonzeros per block row (same for all rows)
3170273d9f13SBarry Smith -  nnz - array containing the number of block nonzeros in the various block rows
3171273d9f13SBarry Smith          (possibly different for each block row) or PETSC_NULL
3172273d9f13SBarry Smith 
3173273d9f13SBarry Smith    Options Database Keys:
3174273d9f13SBarry Smith .   -mat_no_unroll - uses code that does not unroll the loops in the
3175273d9f13SBarry Smith                      block calculations (much slower)
3176273d9f13SBarry Smith .    -mat_block_size - size of the blocks to use
3177273d9f13SBarry Smith 
3178273d9f13SBarry Smith    Level: intermediate
3179273d9f13SBarry Smith 
3180273d9f13SBarry Smith    Notes:
318149a6f317SBarry Smith    If the nnz parameter is given then the nz parameter is ignored
318249a6f317SBarry Smith 
3183aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
3184aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
3185aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
3186aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
3187aa95bbe8SBarry Smith 
3188273d9f13SBarry Smith    The block AIJ format is fully compatible with standard Fortran 77
3189273d9f13SBarry Smith    storage.  That is, the stored row and column indices can begin at
3190273d9f13SBarry Smith    either one (as in Fortran) or zero.  See the users' manual for details.
3191273d9f13SBarry Smith 
3192273d9f13SBarry Smith    Specify the preallocated storage with either nz or nnz (not both).
3193273d9f13SBarry Smith    Set nz=PETSC_DEFAULT and nnz=PETSC_NULL for PETSc to control dynamic memory
3194273d9f13SBarry Smith    allocation.  For additional details, see the users manual chapter on
3195273d9f13SBarry Smith    matrices.
3196273d9f13SBarry Smith 
3197aa95bbe8SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatGetInfo()
3198273d9f13SBarry Smith @*/
3199be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt nz,const PetscInt nnz[])
3200273d9f13SBarry Smith {
3201c1ac3661SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[]);
3202273d9f13SBarry Smith 
3203273d9f13SBarry Smith   PetscFunctionBegin;
3204a23d5eceSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,"MatSeqBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
3205a23d5eceSKris Buschelman   if (f) {
3206a23d5eceSKris Buschelman     ierr = (*f)(B,bs,nz,nnz);CHKERRQ(ierr);
3207273d9f13SBarry Smith   }
3208273d9f13SBarry Smith   PetscFunctionReturn(0);
3209273d9f13SBarry Smith }
3210a1d92eedSBarry Smith 
3211c75a6043SHong Zhang #undef __FUNCT__
3212725b52f3SLisandro Dalcin #define __FUNCT__ "MatSeqBAIJSetPreallocationCSR"
3213725b52f3SLisandro Dalcin /*@C
3214725b52f3SLisandro Dalcin    MatSeqBAIJSetPreallocationCSR - Allocates memory for a sparse sequential matrix in AIJ format
3215725b52f3SLisandro Dalcin    (the default sequential PETSc format).
3216725b52f3SLisandro Dalcin 
3217725b52f3SLisandro Dalcin    Collective on MPI_Comm
3218725b52f3SLisandro Dalcin 
3219725b52f3SLisandro Dalcin    Input Parameters:
3220725b52f3SLisandro Dalcin +  A - the matrix
3221725b52f3SLisandro Dalcin .  i - the indices into j for the start of each local row (starts with zero)
3222725b52f3SLisandro Dalcin .  j - the column indices for each local row (starts with zero) these must be sorted for each row
3223725b52f3SLisandro Dalcin -  v - optional values in the matrix
3224725b52f3SLisandro Dalcin 
3225725b52f3SLisandro Dalcin    Level: developer
3226725b52f3SLisandro Dalcin 
3227725b52f3SLisandro Dalcin .keywords: matrix, aij, compressed row, sparse
3228725b52f3SLisandro Dalcin 
3229725b52f3SLisandro Dalcin .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatSeqBAIJSetPreallocation(), MATSEQBAIJ
3230725b52f3SLisandro Dalcin @*/
3231725b52f3SLisandro Dalcin PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
3232725b52f3SLisandro Dalcin {
3233725b52f3SLisandro Dalcin   PetscErrorCode ierr,(*f)(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]);
3234725b52f3SLisandro Dalcin 
3235725b52f3SLisandro Dalcin   PetscFunctionBegin;
3236725b52f3SLisandro Dalcin   ierr = PetscObjectQueryFunction((PetscObject)B,"MatSeqBAIJSetPreallocationCSR_C",(void (**)(void))&f);CHKERRQ(ierr);
3237725b52f3SLisandro Dalcin   if (f) {
3238725b52f3SLisandro Dalcin     ierr = (*f)(B,bs,i,j,v);CHKERRQ(ierr);
3239725b52f3SLisandro Dalcin   }
3240725b52f3SLisandro Dalcin   PetscFunctionReturn(0);
3241725b52f3SLisandro Dalcin }
3242725b52f3SLisandro Dalcin 
3243725b52f3SLisandro Dalcin 
3244725b52f3SLisandro Dalcin #undef __FUNCT__
3245c75a6043SHong Zhang #define __FUNCT__ "MatCreateSeqBAIJWithArrays"
3246c75a6043SHong Zhang /*@
3247c75a6043SHong Zhang      MatCreateSeqBAIJWithArrays - Creates an sequential BAIJ matrix using matrix elements
3248c75a6043SHong Zhang               (upper triangular entries in CSR format) provided by the user.
3249c75a6043SHong Zhang 
3250c75a6043SHong Zhang      Collective on MPI_Comm
3251c75a6043SHong Zhang 
3252c75a6043SHong Zhang    Input Parameters:
3253c75a6043SHong Zhang +  comm - must be an MPI communicator of size 1
3254c75a6043SHong Zhang .  bs - size of block
3255c75a6043SHong Zhang .  m - number of rows
3256c75a6043SHong Zhang .  n - number of columns
3257c75a6043SHong Zhang .  i - row indices
3258c75a6043SHong Zhang .  j - column indices
3259c75a6043SHong Zhang -  a - matrix values
3260c75a6043SHong Zhang 
3261c75a6043SHong Zhang    Output Parameter:
3262c75a6043SHong Zhang .  mat - the matrix
3263c75a6043SHong Zhang 
3264c75a6043SHong Zhang    Level: intermediate
3265c75a6043SHong Zhang 
3266c75a6043SHong Zhang    Notes:
3267c75a6043SHong Zhang        The i, j, and a arrays are not copied by this routine, the user must free these arrays
3268c75a6043SHong Zhang     once the matrix is destroyed
3269c75a6043SHong Zhang 
3270c75a6043SHong Zhang        You cannot set new nonzero locations into this matrix, that will generate an error.
3271c75a6043SHong Zhang 
3272c75a6043SHong Zhang        The i and j indices are 0 based
3273c75a6043SHong Zhang 
3274c75a6043SHong Zhang .seealso: MatCreate(), MatCreateMPIBAIJ(), MatCreateSeqBAIJ()
3275c75a6043SHong Zhang 
3276c75a6043SHong Zhang @*/
3277c75a6043SHong Zhang PetscErrorCode PETSCMAT_DLLEXPORT MatCreateSeqBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt* i,PetscInt*j,PetscScalar *a,Mat *mat)
3278c75a6043SHong Zhang {
3279c75a6043SHong Zhang   PetscErrorCode ierr;
3280c75a6043SHong Zhang   PetscInt       ii;
3281c75a6043SHong Zhang   Mat_SeqBAIJ    *baij;
3282c75a6043SHong Zhang 
3283c75a6043SHong Zhang   PetscFunctionBegin;
3284c75a6043SHong Zhang   if (bs != 1) SETERRQ1(PETSC_ERR_SUP,"block size %D > 1 is not supported yet",bs);
3285c75a6043SHong Zhang   if (i[0]) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0");
3286c75a6043SHong Zhang 
3287c75a6043SHong Zhang   ierr = MatCreate(comm,mat);CHKERRQ(ierr);
3288c75a6043SHong Zhang   ierr = MatSetSizes(*mat,m,n,m,n);CHKERRQ(ierr);
3289c75a6043SHong Zhang   ierr = MatSetType(*mat,MATSEQBAIJ);CHKERRQ(ierr);
3290c75a6043SHong Zhang   ierr = MatSeqBAIJSetPreallocation_SeqBAIJ(*mat,bs,MAT_SKIP_ALLOCATION,0);CHKERRQ(ierr);
3291c75a6043SHong Zhang   baij = (Mat_SeqBAIJ*)(*mat)->data;
3292c75a6043SHong Zhang   ierr = PetscMalloc2(m,PetscInt,&baij->imax,m,PetscInt,&baij->ilen);CHKERRQ(ierr);
3293c75a6043SHong Zhang 
3294c75a6043SHong Zhang   baij->i = i;
3295c75a6043SHong Zhang   baij->j = j;
3296c75a6043SHong Zhang   baij->a = a;
3297c75a6043SHong Zhang   baij->singlemalloc = PETSC_FALSE;
3298c75a6043SHong Zhang   baij->nonew        = -1;             /*this indicates that inserting a new value in the matrix that generates a new nonzero is an error*/
3299e6b907acSBarry Smith   baij->free_a       = PETSC_FALSE;
3300e6b907acSBarry Smith   baij->free_ij       = PETSC_FALSE;
3301c75a6043SHong Zhang 
3302c75a6043SHong Zhang   for (ii=0; ii<m; ii++) {
3303c75a6043SHong Zhang     baij->ilen[ii] = baij->imax[ii] = i[ii+1] - i[ii];
3304c75a6043SHong Zhang #if defined(PETSC_USE_DEBUG)
3305c75a6043SHong Zhang     if (i[ii+1] - i[ii] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Negative row length in i (row indices) row = %d length = %d",ii,i[ii+1] - i[ii]);
3306c75a6043SHong Zhang #endif
3307c75a6043SHong Zhang   }
3308c75a6043SHong Zhang #if defined(PETSC_USE_DEBUG)
3309c75a6043SHong Zhang   for (ii=0; ii<baij->i[m]; ii++) {
3310c75a6043SHong Zhang     if (j[ii] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Negative column index at location = %d index = %d",ii,j[ii]);
3311c75a6043SHong Zhang     if (j[ii] > n - 1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column index to large at location = %d index = %d",ii,j[ii]);
3312c75a6043SHong Zhang   }
3313c75a6043SHong Zhang #endif
3314c75a6043SHong Zhang 
3315c75a6043SHong Zhang   ierr = MatAssemblyBegin(*mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
3316c75a6043SHong Zhang   ierr = MatAssemblyEnd(*mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
3317c75a6043SHong Zhang   PetscFunctionReturn(0);
3318c75a6043SHong Zhang }
3319