1be1d678aSKris Buschelman #define PETSCMAT_DLL 2be1d678aSKris Buschelman 32593348eSBarry Smith /* 4b6490206SBarry Smith Defines the basic matrix operations for the BAIJ (compressed row) 52593348eSBarry Smith matrix storage format. 62593348eSBarry Smith */ 770f55243SBarry Smith #include "src/mat/impls/baij/seq/baij.h" 81a6a6d98SBarry Smith #include "src/inline/spops.h" 9325e03aeSBarry Smith #include "petscsys.h" /*I "petscmat.h" I*/ 103b547af2SSatish Balay 11b01c7715SBarry Smith #include "src/inline/ilu.h" 12b01c7715SBarry Smith 13b01c7715SBarry Smith #undef __FUNCT__ 1443516a2dSKris Buschelman #define __FUNCT__ "MatSeqBAIJInvertBlockDiagonal" 15bc08b0f1SBarry Smith /*@ 1643516a2dSKris Buschelman MatSeqBAIJInvertBlockDiagonal - Inverts the block diagonal entries. 1743516a2dSKris Buschelman 1843516a2dSKris Buschelman Collective on Mat 1943516a2dSKris Buschelman 2043516a2dSKris Buschelman Input Parameters: 2143516a2dSKris Buschelman . mat - the matrix 2243516a2dSKris Buschelman 2343516a2dSKris Buschelman Level: advanced 2443516a2dSKris Buschelman @*/ 2546129b97SKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJInvertBlockDiagonal(Mat mat) 2643516a2dSKris Buschelman { 2743516a2dSKris Buschelman PetscErrorCode ierr,(*f)(Mat); 2843516a2dSKris Buschelman 2943516a2dSKris Buschelman PetscFunctionBegin; 3043516a2dSKris Buschelman PetscValidHeaderSpecific(mat,MAT_COOKIE,1); 3143516a2dSKris Buschelman if (!mat->assembled) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for unassembled matrix"); 3243516a2dSKris Buschelman if (mat->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 3343516a2dSKris Buschelman 3443516a2dSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)mat,"MatSeqBAIJInvertBlockDiagonal_C",(void (**)(void))&f);CHKERRQ(ierr); 3543516a2dSKris Buschelman if (f) { 3643516a2dSKris Buschelman ierr = (*f)(mat);CHKERRQ(ierr); 3743516a2dSKris Buschelman } else { 3843516a2dSKris Buschelman SETERRQ(PETSC_ERR_SUP,"Currently only implemented for SeqBAIJ."); 3943516a2dSKris Buschelman } 4043516a2dSKris Buschelman PetscFunctionReturn(0); 4143516a2dSKris Buschelman } 4243516a2dSKris Buschelman 4343516a2dSKris Buschelman EXTERN_C_BEGIN 4443516a2dSKris Buschelman #undef __FUNCT__ 45b01c7715SBarry Smith #define __FUNCT__ "MatInvertBlockDiagonal_SeqBAIJ" 4646129b97SKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatInvertBlockDiagonal_SeqBAIJ(Mat A) 47b01c7715SBarry Smith { 48b01c7715SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*) A->data; 496849ba73SBarry Smith PetscErrorCode ierr; 50899cda47SBarry Smith PetscInt *diag_offset,i,bs = A->rmap.bs,mbs = a->mbs; 5197e5c40aSBarry Smith MatScalar *v = a->a,*odiag,*diag,*mdiag; 5262bba022SBarry Smith PetscReal shift = 0.0; 53b01c7715SBarry Smith 54b01c7715SBarry Smith PetscFunctionBegin; 55b01c7715SBarry Smith if (a->idiagvalid) PetscFunctionReturn(0); 56b01c7715SBarry Smith ierr = MatMarkDiagonal_SeqBAIJ(A);CHKERRQ(ierr); 57b01c7715SBarry Smith diag_offset = a->diag; 58b01c7715SBarry Smith if (!a->idiag) { 59b01c7715SBarry Smith ierr = PetscMalloc(2*bs*bs*mbs*sizeof(PetscScalar),&a->idiag);CHKERRQ(ierr); 60b01c7715SBarry Smith } 61b01c7715SBarry Smith diag = a->idiag; 62b01c7715SBarry Smith mdiag = a->idiag+bs*bs*mbs; 63b01c7715SBarry Smith /* factor and invert each block */ 64521d7252SBarry Smith switch (bs){ 65b01c7715SBarry Smith case 2: 66b01c7715SBarry Smith for (i=0; i<mbs; i++) { 67b01c7715SBarry Smith odiag = v + 4*diag_offset[i]; 68b01c7715SBarry Smith diag[0] = odiag[0]; diag[1] = odiag[1]; diag[2] = odiag[2]; diag[3] = odiag[3]; 69b01c7715SBarry Smith mdiag[0] = odiag[0]; mdiag[1] = odiag[1]; mdiag[2] = odiag[2]; mdiag[3] = odiag[3]; 7062bba022SBarry Smith ierr = Kernel_A_gets_inverse_A_2(diag,shift);CHKERRQ(ierr); 71b01c7715SBarry Smith diag += 4; 72b01c7715SBarry Smith mdiag += 4; 73b01c7715SBarry Smith } 74b01c7715SBarry Smith break; 75b01c7715SBarry Smith case 3: 76b01c7715SBarry Smith for (i=0; i<mbs; i++) { 77b01c7715SBarry Smith odiag = v + 9*diag_offset[i]; 78b01c7715SBarry Smith diag[0] = odiag[0]; diag[1] = odiag[1]; diag[2] = odiag[2]; diag[3] = odiag[3]; 79b01c7715SBarry Smith diag[4] = odiag[4]; diag[5] = odiag[5]; diag[6] = odiag[6]; diag[7] = odiag[7]; 80b01c7715SBarry Smith diag[8] = odiag[8]; 81b01c7715SBarry Smith mdiag[0] = odiag[0]; mdiag[1] = odiag[1]; mdiag[2] = odiag[2]; mdiag[3] = odiag[3]; 82b01c7715SBarry Smith mdiag[4] = odiag[4]; mdiag[5] = odiag[5]; mdiag[6] = odiag[6]; mdiag[7] = odiag[7]; 83b01c7715SBarry Smith mdiag[8] = odiag[8]; 8462bba022SBarry Smith ierr = Kernel_A_gets_inverse_A_3(diag,shift);CHKERRQ(ierr); 85b01c7715SBarry Smith diag += 9; 86b01c7715SBarry Smith mdiag += 9; 87b01c7715SBarry Smith } 88b01c7715SBarry Smith break; 89b01c7715SBarry Smith case 4: 90b01c7715SBarry Smith for (i=0; i<mbs; i++) { 91b01c7715SBarry Smith odiag = v + 16*diag_offset[i]; 92b01c7715SBarry Smith ierr = PetscMemcpy(diag,odiag,16*sizeof(PetscScalar));CHKERRQ(ierr); 93b01c7715SBarry Smith ierr = PetscMemcpy(mdiag,odiag,16*sizeof(PetscScalar));CHKERRQ(ierr); 9462bba022SBarry Smith ierr = Kernel_A_gets_inverse_A_4(diag,shift);CHKERRQ(ierr); 95b01c7715SBarry Smith diag += 16; 96b01c7715SBarry Smith mdiag += 16; 97b01c7715SBarry Smith } 98b01c7715SBarry Smith break; 99b01c7715SBarry Smith case 5: 100b01c7715SBarry Smith for (i=0; i<mbs; i++) { 101b01c7715SBarry Smith odiag = v + 25*diag_offset[i]; 102b01c7715SBarry Smith ierr = PetscMemcpy(diag,odiag,25*sizeof(PetscScalar));CHKERRQ(ierr); 103b01c7715SBarry Smith ierr = PetscMemcpy(mdiag,odiag,25*sizeof(PetscScalar));CHKERRQ(ierr); 10462bba022SBarry Smith ierr = Kernel_A_gets_inverse_A_5(diag,shift);CHKERRQ(ierr); 105b01c7715SBarry Smith diag += 25; 106b01c7715SBarry Smith mdiag += 25; 107b01c7715SBarry Smith } 108b01c7715SBarry Smith break; 109b01c7715SBarry Smith default: 110521d7252SBarry Smith SETERRQ1(PETSC_ERR_SUP,"not supported for block size %D",bs); 111b01c7715SBarry Smith } 112b01c7715SBarry Smith a->idiagvalid = PETSC_TRUE; 113b01c7715SBarry Smith PetscFunctionReturn(0); 114b01c7715SBarry Smith } 11543516a2dSKris Buschelman EXTERN_C_END 116b01c7715SBarry Smith 117b01c7715SBarry Smith #undef __FUNCT__ 1186d3beeddSMatthew Knepley #define __FUNCT__ "MatPBRelax_SeqBAIJ_1" 1196d3beeddSMatthew Knepley PetscErrorCode MatPBRelax_SeqBAIJ_1(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 1206d3beeddSMatthew Knepley { 1216d3beeddSMatthew Knepley Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 1226d3beeddSMatthew Knepley PetscScalar *x,x1,s1; 123*dd6ea824SBarry Smith const PetscScalar *b; 124*dd6ea824SBarry Smith const MatScalar *aa = a->a, *idiag,*mdiag,*v; 1256d3beeddSMatthew Knepley PetscErrorCode ierr; 1266d3beeddSMatthew Knepley PetscInt m = a->mbs,i,i2,nz,idx; 1276d3beeddSMatthew Knepley const PetscInt *diag,*ai = a->i,*aj = a->j,*vi; 1286d3beeddSMatthew Knepley 1296d3beeddSMatthew Knepley PetscFunctionBegin; 1306d3beeddSMatthew Knepley if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat"); 1316d3beeddSMatthew Knepley its = its*lits; 1326d3beeddSMatthew Knepley if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 1336d3beeddSMatthew Knepley if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift"); 1346d3beeddSMatthew Knepley if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor"); 1356d3beeddSMatthew Knepley if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts"); 1366d3beeddSMatthew Knepley if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations"); 1376d3beeddSMatthew Knepley 1386d3beeddSMatthew Knepley if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);} 1396d3beeddSMatthew Knepley 1406d3beeddSMatthew Knepley diag = a->diag; 1416d3beeddSMatthew Knepley idiag = a->idiag; 1426d3beeddSMatthew Knepley ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 1436d3beeddSMatthew Knepley ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 1446d3beeddSMatthew Knepley 1456d3beeddSMatthew Knepley if (flag & SOR_ZERO_INITIAL_GUESS) { 1466d3beeddSMatthew Knepley if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){ 1476d3beeddSMatthew Knepley x[0] = b[0]*idiag[0]; 1486d3beeddSMatthew Knepley i2 = 1; 1496d3beeddSMatthew Knepley idiag += 1; 1506d3beeddSMatthew Knepley for (i=1; i<m; i++) { 1516d3beeddSMatthew Knepley v = aa + ai[i]; 1526d3beeddSMatthew Knepley vi = aj + ai[i]; 1536d3beeddSMatthew Knepley nz = diag[i] - ai[i]; 1546d3beeddSMatthew Knepley s1 = b[i2]; 1556d3beeddSMatthew Knepley while (nz--) { 1566d3beeddSMatthew Knepley idx = (*vi++); 1576d3beeddSMatthew Knepley x1 = x[idx]; 1586d3beeddSMatthew Knepley s1 -= v[0]*x1; 1596d3beeddSMatthew Knepley v += 1; 1606d3beeddSMatthew Knepley } 1616d3beeddSMatthew Knepley x[i2] = idiag[0]*s1; 1626d3beeddSMatthew Knepley idiag += 1; 1636d3beeddSMatthew Knepley i2 += 1; 1646d3beeddSMatthew Knepley } 1656d3beeddSMatthew Knepley /* for logging purposes assume number of nonzero in lower half is 1/2 of total */ 1666d3beeddSMatthew Knepley ierr = PetscLogFlops(a->nz);CHKERRQ(ierr); 1676d3beeddSMatthew Knepley } 1686d3beeddSMatthew Knepley if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) && 1696d3beeddSMatthew Knepley (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) { 1706d3beeddSMatthew Knepley i2 = 0; 1716d3beeddSMatthew Knepley mdiag = a->idiag+a->mbs; 1726d3beeddSMatthew Knepley for (i=0; i<m; i++) { 1736d3beeddSMatthew Knepley x1 = x[i2]; 1746d3beeddSMatthew Knepley x[i2] = mdiag[0]*x1; 1756d3beeddSMatthew Knepley mdiag += 1; 1766d3beeddSMatthew Knepley i2 += 1; 1776d3beeddSMatthew Knepley } 1786d3beeddSMatthew Knepley ierr = PetscLogFlops(m);CHKERRQ(ierr); 1796d3beeddSMatthew Knepley } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) { 1806d3beeddSMatthew Knepley ierr = PetscMemcpy(x,b,A->rmap.N*sizeof(PetscScalar));CHKERRQ(ierr); 1816d3beeddSMatthew Knepley } 1826d3beeddSMatthew Knepley if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){ 1836d3beeddSMatthew Knepley idiag = a->idiag+a->mbs - 1; 1846d3beeddSMatthew Knepley i2 = m - 1; 1856d3beeddSMatthew Knepley x1 = x[i2]; 1866d3beeddSMatthew Knepley x[i2] = idiag[0]*x1; 1876d3beeddSMatthew Knepley idiag -= 1; 1886d3beeddSMatthew Knepley i2 -= 1; 1896d3beeddSMatthew Knepley for (i=m-2; i>=0; i--) { 1906d3beeddSMatthew Knepley v = aa + (diag[i]+1); 1916d3beeddSMatthew Knepley vi = aj + diag[i] + 1; 1926d3beeddSMatthew Knepley nz = ai[i+1] - diag[i] - 1; 1936d3beeddSMatthew Knepley s1 = x[i2]; 1946d3beeddSMatthew Knepley while (nz--) { 1956d3beeddSMatthew Knepley idx = (*vi++); 1966d3beeddSMatthew Knepley x1 = x[idx]; 1976d3beeddSMatthew Knepley s1 -= v[0]*x1; 1986d3beeddSMatthew Knepley v += 1; 1996d3beeddSMatthew Knepley } 2006d3beeddSMatthew Knepley x[i2] = idiag[0]*s1; 2016d3beeddSMatthew Knepley idiag -= 2; 2026d3beeddSMatthew Knepley i2 -= 1; 2036d3beeddSMatthew Knepley } 2046d3beeddSMatthew Knepley ierr = PetscLogFlops(a->nz);CHKERRQ(ierr); 2056d3beeddSMatthew Knepley } 2066d3beeddSMatthew Knepley } else { 2076d3beeddSMatthew Knepley SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess"); 2086d3beeddSMatthew Knepley } 2096d3beeddSMatthew Knepley ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2106d3beeddSMatthew Knepley ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 2116d3beeddSMatthew Knepley PetscFunctionReturn(0); 2126d3beeddSMatthew Knepley } 2136d3beeddSMatthew Knepley 2146d3beeddSMatthew Knepley #undef __FUNCT__ 215b01c7715SBarry Smith #define __FUNCT__ "MatPBRelax_SeqBAIJ_2" 216c1ac3661SBarry Smith PetscErrorCode MatPBRelax_SeqBAIJ_2(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 217b01c7715SBarry Smith { 218b01c7715SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 219b01c7715SBarry Smith PetscScalar *x,x1,x2,s1,s2; 220*dd6ea824SBarry Smith const PetscScalar *b; 221*dd6ea824SBarry Smith const MatScalar *v,*aa = a->a, *idiag,*mdiag; 222dfbe8321SBarry Smith PetscErrorCode ierr; 223c1ac3661SBarry Smith PetscInt m = a->mbs,i,i2,nz,idx; 224c1ac3661SBarry Smith const PetscInt *diag,*ai = a->i,*aj = a->j,*vi; 225b01c7715SBarry Smith 226b01c7715SBarry Smith PetscFunctionBegin; 22751f519a2SBarry Smith if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat"); 228b01c7715SBarry Smith its = its*lits; 22977431f27SBarry Smith if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 230b01c7715SBarry Smith if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift"); 231b01c7715SBarry Smith if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor"); 23271f1c65dSBarry Smith if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts"); 233b01c7715SBarry Smith if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations"); 234b01c7715SBarry Smith 235b01c7715SBarry Smith if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);} 236b01c7715SBarry Smith 237b01c7715SBarry Smith diag = a->diag; 238b01c7715SBarry Smith idiag = a->idiag; 2391ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2401ebc52fbSHong Zhang ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 241b01c7715SBarry Smith 242b01c7715SBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 243b01c7715SBarry Smith if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){ 244b01c7715SBarry Smith x[0] = b[0]*idiag[0] + b[1]*idiag[2]; 245b01c7715SBarry Smith x[1] = b[0]*idiag[1] + b[1]*idiag[3]; 246b01c7715SBarry Smith i2 = 2; 247b01c7715SBarry Smith idiag += 4; 248b01c7715SBarry Smith for (i=1; i<m; i++) { 249b01c7715SBarry Smith v = aa + 4*ai[i]; 250b01c7715SBarry Smith vi = aj + ai[i]; 251b01c7715SBarry Smith nz = diag[i] - ai[i]; 252b01c7715SBarry Smith s1 = b[i2]; s2 = b[i2+1]; 253b01c7715SBarry Smith while (nz--) { 254b01c7715SBarry Smith idx = 2*(*vi++); 255b01c7715SBarry Smith x1 = x[idx]; x2 = x[1+idx]; 256b01c7715SBarry Smith s1 -= v[0]*x1 + v[2]*x2; 257b01c7715SBarry Smith s2 -= v[1]*x1 + v[3]*x2; 258b01c7715SBarry Smith v += 4; 259b01c7715SBarry Smith } 260b01c7715SBarry Smith x[i2] = idiag[0]*s1 + idiag[2]*s2; 261b01c7715SBarry Smith x[i2+1] = idiag[1]*s1 + idiag[3]*s2; 262b01c7715SBarry Smith idiag += 4; 263b01c7715SBarry Smith i2 += 2; 264b01c7715SBarry Smith } 265b01c7715SBarry Smith /* for logging purposes assume number of nonzero in lower half is 1/2 of total */ 266efee365bSSatish Balay ierr = PetscLogFlops(4*(a->nz));CHKERRQ(ierr); 267b01c7715SBarry Smith } 268b01c7715SBarry Smith if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) && 269b01c7715SBarry Smith (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) { 270b01c7715SBarry Smith i2 = 0; 271b01c7715SBarry Smith mdiag = a->idiag+4*a->mbs; 272b01c7715SBarry Smith for (i=0; i<m; i++) { 273b01c7715SBarry Smith x1 = x[i2]; x2 = x[i2+1]; 274b01c7715SBarry Smith x[i2] = mdiag[0]*x1 + mdiag[2]*x2; 275b01c7715SBarry Smith x[i2+1] = mdiag[1]*x1 + mdiag[3]*x2; 276b01c7715SBarry Smith mdiag += 4; 277b01c7715SBarry Smith i2 += 2; 278b01c7715SBarry Smith } 279efee365bSSatish Balay ierr = PetscLogFlops(6*m);CHKERRQ(ierr); 280b01c7715SBarry Smith } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) { 281899cda47SBarry Smith ierr = PetscMemcpy(x,b,A->rmap.N*sizeof(PetscScalar));CHKERRQ(ierr); 282b01c7715SBarry Smith } 283b01c7715SBarry Smith if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){ 284b01c7715SBarry Smith idiag = a->idiag+4*a->mbs - 4; 285b01c7715SBarry Smith i2 = 2*m - 2; 286b01c7715SBarry Smith x1 = x[i2]; x2 = x[i2+1]; 287b01c7715SBarry Smith x[i2] = idiag[0]*x1 + idiag[2]*x2; 288b01c7715SBarry Smith x[i2+1] = idiag[1]*x1 + idiag[3]*x2; 289b01c7715SBarry Smith idiag -= 4; 290b01c7715SBarry Smith i2 -= 2; 291b01c7715SBarry Smith for (i=m-2; i>=0; i--) { 292b01c7715SBarry Smith v = aa + 4*(diag[i]+1); 293b01c7715SBarry Smith vi = aj + diag[i] + 1; 294b01c7715SBarry Smith nz = ai[i+1] - diag[i] - 1; 295b01c7715SBarry Smith s1 = x[i2]; s2 = x[i2+1]; 296b01c7715SBarry Smith while (nz--) { 297b01c7715SBarry Smith idx = 2*(*vi++); 298b01c7715SBarry Smith x1 = x[idx]; x2 = x[1+idx]; 299b01c7715SBarry Smith s1 -= v[0]*x1 + v[2]*x2; 300b01c7715SBarry Smith s2 -= v[1]*x1 + v[3]*x2; 301b01c7715SBarry Smith v += 4; 302b01c7715SBarry Smith } 303b01c7715SBarry Smith x[i2] = idiag[0]*s1 + idiag[2]*s2; 304b01c7715SBarry Smith x[i2+1] = idiag[1]*s1 + idiag[3]*s2; 305b01c7715SBarry Smith idiag -= 4; 306b01c7715SBarry Smith i2 -= 2; 307b01c7715SBarry Smith } 308efee365bSSatish Balay ierr = PetscLogFlops(4*(a->nz));CHKERRQ(ierr); 309b01c7715SBarry Smith } 310b01c7715SBarry Smith } else { 311634064b4SBarry Smith SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess"); 312b01c7715SBarry Smith } 3131ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 3141ebc52fbSHong Zhang ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 315b01c7715SBarry Smith PetscFunctionReturn(0); 316b01c7715SBarry Smith } 317b01c7715SBarry Smith 318b01c7715SBarry Smith #undef __FUNCT__ 319b01c7715SBarry Smith #define __FUNCT__ "MatPBRelax_SeqBAIJ_3" 320c1ac3661SBarry Smith PetscErrorCode MatPBRelax_SeqBAIJ_3(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 321b01c7715SBarry Smith { 322b01c7715SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 323b01c7715SBarry Smith PetscScalar *x,x1,x2,x3,s1,s2,s3; 324*dd6ea824SBarry Smith const MatScalar *v,*aa = a->a, *idiag,*mdiag; 325*dd6ea824SBarry Smith const PetscScalar *b; 326dfbe8321SBarry Smith PetscErrorCode ierr; 327c1ac3661SBarry Smith PetscInt m = a->mbs,i,i2,nz,idx; 328c1ac3661SBarry Smith const PetscInt *diag,*ai = a->i,*aj = a->j,*vi; 329b01c7715SBarry Smith 330b01c7715SBarry Smith PetscFunctionBegin; 331b01c7715SBarry Smith its = its*lits; 33271f1c65dSBarry Smith if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat"); 33377431f27SBarry Smith if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 334b01c7715SBarry Smith if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift"); 335b01c7715SBarry Smith if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor"); 33671f1c65dSBarry Smith if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts"); 337b01c7715SBarry Smith if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations"); 338b01c7715SBarry Smith 339b01c7715SBarry Smith if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);} 340b01c7715SBarry Smith 341b01c7715SBarry Smith diag = a->diag; 342b01c7715SBarry Smith idiag = a->idiag; 3431ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 3441ebc52fbSHong Zhang ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 345b01c7715SBarry Smith 346b01c7715SBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 347b01c7715SBarry Smith if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){ 348b01c7715SBarry Smith x[0] = b[0]*idiag[0] + b[1]*idiag[3] + b[2]*idiag[6]; 349b01c7715SBarry Smith x[1] = b[0]*idiag[1] + b[1]*idiag[4] + b[2]*idiag[7]; 350b01c7715SBarry Smith x[2] = b[0]*idiag[2] + b[1]*idiag[5] + b[2]*idiag[8]; 351b01c7715SBarry Smith i2 = 3; 352b01c7715SBarry Smith idiag += 9; 353b01c7715SBarry Smith for (i=1; i<m; i++) { 354b01c7715SBarry Smith v = aa + 9*ai[i]; 355b01c7715SBarry Smith vi = aj + ai[i]; 356b01c7715SBarry Smith nz = diag[i] - ai[i]; 357b01c7715SBarry Smith s1 = b[i2]; s2 = b[i2+1]; s3 = b[i2+2]; 358b01c7715SBarry Smith while (nz--) { 359b01c7715SBarry Smith idx = 3*(*vi++); 360b01c7715SBarry Smith x1 = x[idx]; x2 = x[1+idx];x3 = x[2+idx]; 361b01c7715SBarry Smith s1 -= v[0]*x1 + v[3]*x2 + v[6]*x3; 362b01c7715SBarry Smith s2 -= v[1]*x1 + v[4]*x2 + v[7]*x3; 363b01c7715SBarry Smith s3 -= v[2]*x1 + v[5]*x2 + v[8]*x3; 364b01c7715SBarry Smith v += 9; 365b01c7715SBarry Smith } 366b01c7715SBarry Smith x[i2] = idiag[0]*s1 + idiag[3]*s2 + idiag[6]*s3; 367b01c7715SBarry Smith x[i2+1] = idiag[1]*s1 + idiag[4]*s2 + idiag[7]*s3; 368b01c7715SBarry Smith x[i2+2] = idiag[2]*s1 + idiag[5]*s2 + idiag[8]*s3; 369b01c7715SBarry Smith idiag += 9; 370b01c7715SBarry Smith i2 += 3; 371b01c7715SBarry Smith } 372b01c7715SBarry Smith /* for logging purposes assume number of nonzero in lower half is 1/2 of total */ 373efee365bSSatish Balay ierr = PetscLogFlops(9*(a->nz));CHKERRQ(ierr); 374b01c7715SBarry Smith } 375b01c7715SBarry Smith if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) && 376b01c7715SBarry Smith (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) { 377b01c7715SBarry Smith i2 = 0; 378b01c7715SBarry Smith mdiag = a->idiag+9*a->mbs; 379b01c7715SBarry Smith for (i=0; i<m; i++) { 380b01c7715SBarry Smith x1 = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; 381b01c7715SBarry Smith x[i2] = mdiag[0]*x1 + mdiag[3]*x2 + mdiag[6]*x3; 382b01c7715SBarry Smith x[i2+1] = mdiag[1]*x1 + mdiag[4]*x2 + mdiag[7]*x3; 383b01c7715SBarry Smith x[i2+2] = mdiag[2]*x1 + mdiag[5]*x2 + mdiag[8]*x3; 384b01c7715SBarry Smith mdiag += 9; 385b01c7715SBarry Smith i2 += 3; 386b01c7715SBarry Smith } 387efee365bSSatish Balay ierr = PetscLogFlops(15*m);CHKERRQ(ierr); 388b01c7715SBarry Smith } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) { 389899cda47SBarry Smith ierr = PetscMemcpy(x,b,A->rmap.N*sizeof(PetscScalar));CHKERRQ(ierr); 390b01c7715SBarry Smith } 391b01c7715SBarry Smith if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){ 392b01c7715SBarry Smith idiag = a->idiag+9*a->mbs - 9; 393b01c7715SBarry Smith i2 = 3*m - 3; 394b01c7715SBarry Smith x1 = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; 395b01c7715SBarry Smith x[i2] = idiag[0]*x1 + idiag[3]*x2 + idiag[6]*x3; 396b01c7715SBarry Smith x[i2+1] = idiag[1]*x1 + idiag[4]*x2 + idiag[7]*x3; 397b01c7715SBarry Smith x[i2+2] = idiag[2]*x1 + idiag[5]*x2 + idiag[8]*x3; 398b01c7715SBarry Smith idiag -= 9; 399b01c7715SBarry Smith i2 -= 3; 400b01c7715SBarry Smith for (i=m-2; i>=0; i--) { 401b01c7715SBarry Smith v = aa + 9*(diag[i]+1); 402b01c7715SBarry Smith vi = aj + diag[i] + 1; 403b01c7715SBarry Smith nz = ai[i+1] - diag[i] - 1; 404b01c7715SBarry Smith s1 = x[i2]; s2 = x[i2+1]; s3 = x[i2+2]; 405b01c7715SBarry Smith while (nz--) { 406b01c7715SBarry Smith idx = 3*(*vi++); 407b01c7715SBarry Smith x1 = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; 408b01c7715SBarry Smith s1 -= v[0]*x1 + v[3]*x2 + v[6]*x3; 409b01c7715SBarry Smith s2 -= v[1]*x1 + v[4]*x2 + v[7]*x3; 410b01c7715SBarry Smith s3 -= v[2]*x1 + v[5]*x2 + v[8]*x3; 411b01c7715SBarry Smith v += 9; 412b01c7715SBarry Smith } 413b01c7715SBarry Smith x[i2] = idiag[0]*s1 + idiag[3]*s2 + idiag[6]*s3; 414b01c7715SBarry Smith x[i2+1] = idiag[1]*s1 + idiag[4]*s2 + idiag[7]*s3; 415b01c7715SBarry Smith x[i2+2] = idiag[2]*s1 + idiag[5]*s2 + idiag[8]*s3; 416b01c7715SBarry Smith idiag -= 9; 417b01c7715SBarry Smith i2 -= 3; 418b01c7715SBarry Smith } 419efee365bSSatish Balay ierr = PetscLogFlops(9*(a->nz));CHKERRQ(ierr); 420b01c7715SBarry Smith } 421b01c7715SBarry Smith } else { 422634064b4SBarry Smith SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess"); 423b01c7715SBarry Smith } 4241ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 4251ebc52fbSHong Zhang ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 426b01c7715SBarry Smith PetscFunctionReturn(0); 427b01c7715SBarry Smith } 428b01c7715SBarry Smith 429b01c7715SBarry Smith #undef __FUNCT__ 430b01c7715SBarry Smith #define __FUNCT__ "MatPBRelax_SeqBAIJ_4" 431c1ac3661SBarry Smith PetscErrorCode MatPBRelax_SeqBAIJ_4(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 432b01c7715SBarry Smith { 433b01c7715SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 434b01c7715SBarry Smith PetscScalar *x,x1,x2,x3,x4,s1,s2,s3,s4; 435*dd6ea824SBarry Smith const MatScalar *v,*aa = a->a, *idiag,*mdiag; 436*dd6ea824SBarry Smith const PetscScalar *b; 437dfbe8321SBarry Smith PetscErrorCode ierr; 438c1ac3661SBarry Smith PetscInt m = a->mbs,i,i2,nz,idx; 439c1ac3661SBarry Smith const PetscInt *diag,*ai = a->i,*aj = a->j,*vi; 440b01c7715SBarry Smith 441b01c7715SBarry Smith PetscFunctionBegin; 44271f1c65dSBarry Smith if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat"); 443b01c7715SBarry Smith its = its*lits; 44477431f27SBarry Smith if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 445b01c7715SBarry Smith if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift"); 446b01c7715SBarry Smith if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor"); 44771f1c65dSBarry Smith if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts"); 448b01c7715SBarry Smith if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations"); 449b01c7715SBarry Smith 450b01c7715SBarry Smith if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);} 451b01c7715SBarry Smith 452b01c7715SBarry Smith diag = a->diag; 453b01c7715SBarry Smith idiag = a->idiag; 4541ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 4551ebc52fbSHong Zhang ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 456b01c7715SBarry Smith 457b01c7715SBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 458b01c7715SBarry Smith if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){ 459b01c7715SBarry Smith x[0] = b[0]*idiag[0] + b[1]*idiag[4] + b[2]*idiag[8] + b[3]*idiag[12]; 460b01c7715SBarry Smith x[1] = b[0]*idiag[1] + b[1]*idiag[5] + b[2]*idiag[9] + b[3]*idiag[13]; 461b01c7715SBarry Smith x[2] = b[0]*idiag[2] + b[1]*idiag[6] + b[2]*idiag[10] + b[3]*idiag[14]; 462b01c7715SBarry Smith x[3] = b[0]*idiag[3] + b[1]*idiag[7] + b[2]*idiag[11] + b[3]*idiag[15]; 463b01c7715SBarry Smith i2 = 4; 464b01c7715SBarry Smith idiag += 16; 465b01c7715SBarry Smith for (i=1; i<m; i++) { 466b01c7715SBarry Smith v = aa + 16*ai[i]; 467b01c7715SBarry Smith vi = aj + ai[i]; 468b01c7715SBarry Smith nz = diag[i] - ai[i]; 469b01c7715SBarry Smith s1 = b[i2]; s2 = b[i2+1]; s3 = b[i2+2]; s4 = b[i2+3]; 470b01c7715SBarry Smith while (nz--) { 471b01c7715SBarry Smith idx = 4*(*vi++); 472b01c7715SBarry Smith x1 = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; 473b01c7715SBarry Smith s1 -= v[0]*x1 + v[4]*x2 + v[8]*x3 + v[12]*x4; 474b01c7715SBarry Smith s2 -= v[1]*x1 + v[5]*x2 + v[9]*x3 + v[13]*x4; 475b01c7715SBarry Smith s3 -= v[2]*x1 + v[6]*x2 + v[10]*x3 + v[14]*x4; 476b01c7715SBarry Smith s4 -= v[3]*x1 + v[7]*x2 + v[11]*x3 + v[15]*x4; 477b01c7715SBarry Smith v += 16; 478b01c7715SBarry Smith } 479b01c7715SBarry Smith x[i2] = idiag[0]*s1 + idiag[4]*s2 + idiag[8]*s3 + idiag[12]*s4; 480b01c7715SBarry Smith x[i2+1] = idiag[1]*s1 + idiag[5]*s2 + idiag[9]*s3 + idiag[13]*s4; 481b01c7715SBarry Smith x[i2+2] = idiag[2]*s1 + idiag[6]*s2 + idiag[10]*s3 + idiag[14]*s4; 482b01c7715SBarry Smith x[i2+3] = idiag[3]*s1 + idiag[7]*s2 + idiag[11]*s3 + idiag[15]*s4; 483b01c7715SBarry Smith idiag += 16; 484b01c7715SBarry Smith i2 += 4; 485b01c7715SBarry Smith } 486b01c7715SBarry Smith /* for logging purposes assume number of nonzero in lower half is 1/2 of total */ 487efee365bSSatish Balay ierr = PetscLogFlops(16*(a->nz));CHKERRQ(ierr); 488b01c7715SBarry Smith } 489b01c7715SBarry Smith if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) && 490b01c7715SBarry Smith (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) { 491b01c7715SBarry Smith i2 = 0; 492b01c7715SBarry Smith mdiag = a->idiag+16*a->mbs; 493b01c7715SBarry Smith for (i=0; i<m; i++) { 494b01c7715SBarry Smith x1 = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; 495b01c7715SBarry Smith x[i2] = mdiag[0]*x1 + mdiag[4]*x2 + mdiag[8]*x3 + mdiag[12]*x4; 496b01c7715SBarry Smith x[i2+1] = mdiag[1]*x1 + mdiag[5]*x2 + mdiag[9]*x3 + mdiag[13]*x4; 497b01c7715SBarry Smith x[i2+2] = mdiag[2]*x1 + mdiag[6]*x2 + mdiag[10]*x3 + mdiag[14]*x4; 498b01c7715SBarry Smith x[i2+3] = mdiag[3]*x1 + mdiag[7]*x2 + mdiag[11]*x3 + mdiag[15]*x4; 499b01c7715SBarry Smith mdiag += 16; 500b01c7715SBarry Smith i2 += 4; 501b01c7715SBarry Smith } 502efee365bSSatish Balay ierr = PetscLogFlops(28*m);CHKERRQ(ierr); 503b01c7715SBarry Smith } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) { 504899cda47SBarry Smith ierr = PetscMemcpy(x,b,A->rmap.N*sizeof(PetscScalar));CHKERRQ(ierr); 505b01c7715SBarry Smith } 506b01c7715SBarry Smith if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){ 507b01c7715SBarry Smith idiag = a->idiag+16*a->mbs - 16; 508b01c7715SBarry Smith i2 = 4*m - 4; 509b01c7715SBarry Smith x1 = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; 510b01c7715SBarry Smith x[i2] = idiag[0]*x1 + idiag[4]*x2 + idiag[8]*x3 + idiag[12]*x4; 511b01c7715SBarry Smith x[i2+1] = idiag[1]*x1 + idiag[5]*x2 + idiag[9]*x3 + idiag[13]*x4; 512b01c7715SBarry Smith x[i2+2] = idiag[2]*x1 + idiag[6]*x2 + idiag[10]*x3 + idiag[14]*x4; 513b01c7715SBarry Smith x[i2+3] = idiag[3]*x1 + idiag[7]*x2 + idiag[11]*x3 + idiag[15]*x4; 514b01c7715SBarry Smith idiag -= 16; 515b01c7715SBarry Smith i2 -= 4; 516b01c7715SBarry Smith for (i=m-2; i>=0; i--) { 517b01c7715SBarry Smith v = aa + 16*(diag[i]+1); 518b01c7715SBarry Smith vi = aj + diag[i] + 1; 519b01c7715SBarry Smith nz = ai[i+1] - diag[i] - 1; 520b01c7715SBarry Smith s1 = x[i2]; s2 = x[i2+1]; s3 = x[i2+2]; s4 = x[i2+3]; 521b01c7715SBarry Smith while (nz--) { 522b01c7715SBarry Smith idx = 4*(*vi++); 523b01c7715SBarry Smith x1 = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; 524b01c7715SBarry Smith s1 -= v[0]*x1 + v[4]*x2 + v[8]*x3 + v[12]*x4; 525b01c7715SBarry Smith s2 -= v[1]*x1 + v[5]*x2 + v[9]*x3 + v[13]*x4; 526b01c7715SBarry Smith s3 -= v[2]*x1 + v[6]*x2 + v[10]*x3 + v[14]*x4; 527b01c7715SBarry Smith s4 -= v[3]*x1 + v[7]*x2 + v[11]*x3 + v[15]*x4; 528b01c7715SBarry Smith v += 16; 529b01c7715SBarry Smith } 530b01c7715SBarry Smith x[i2] = idiag[0]*s1 + idiag[4]*s2 + idiag[8]*s3 + idiag[12]*s4; 531b01c7715SBarry Smith x[i2+1] = idiag[1]*s1 + idiag[5]*s2 + idiag[9]*s3 + idiag[13]*s4; 532b01c7715SBarry Smith x[i2+2] = idiag[2]*s1 + idiag[6]*s2 + idiag[10]*s3 + idiag[14]*s4; 533b01c7715SBarry Smith x[i2+3] = idiag[3]*s1 + idiag[7]*s2 + idiag[11]*s3 + idiag[15]*s4; 534b01c7715SBarry Smith idiag -= 16; 535b01c7715SBarry Smith i2 -= 4; 536b01c7715SBarry Smith } 537efee365bSSatish Balay ierr = PetscLogFlops(16*(a->nz));CHKERRQ(ierr); 538b01c7715SBarry Smith } 539b01c7715SBarry Smith } else { 540634064b4SBarry Smith SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess"); 541b01c7715SBarry Smith } 5421ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 5431ebc52fbSHong Zhang ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 544b01c7715SBarry Smith PetscFunctionReturn(0); 545b01c7715SBarry Smith } 546b01c7715SBarry Smith 547b01c7715SBarry Smith #undef __FUNCT__ 548b01c7715SBarry Smith #define __FUNCT__ "MatPBRelax_SeqBAIJ_5" 549c1ac3661SBarry Smith PetscErrorCode MatPBRelax_SeqBAIJ_5(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 550b01c7715SBarry Smith { 551b01c7715SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 552b01c7715SBarry Smith PetscScalar *x,x1,x2,x3,x4,x5,s1,s2,s3,s4,s5; 553*dd6ea824SBarry Smith const MatScalar *v,*aa = a->a, *idiag,*mdiag; 554*dd6ea824SBarry Smith const PetscScalar *b; 555dfbe8321SBarry Smith PetscErrorCode ierr; 556c1ac3661SBarry Smith PetscInt m = a->mbs,i,i2,nz,idx; 557c1ac3661SBarry Smith const PetscInt *diag,*ai = a->i,*aj = a->j,*vi; 558b01c7715SBarry Smith 559b01c7715SBarry Smith PetscFunctionBegin; 56071f1c65dSBarry Smith if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat"); 561b01c7715SBarry Smith its = its*lits; 56277431f27SBarry Smith if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 563b01c7715SBarry Smith if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift"); 564b01c7715SBarry Smith if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor"); 56571f1c65dSBarry Smith if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts"); 566b01c7715SBarry Smith if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations"); 567b01c7715SBarry Smith 568b01c7715SBarry Smith if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);} 569b01c7715SBarry Smith 570b01c7715SBarry Smith diag = a->diag; 571b01c7715SBarry Smith idiag = a->idiag; 5721ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 5731ebc52fbSHong Zhang ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 574b01c7715SBarry Smith 575b01c7715SBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 576b01c7715SBarry Smith if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){ 577b01c7715SBarry Smith x[0] = b[0]*idiag[0] + b[1]*idiag[5] + b[2]*idiag[10] + b[3]*idiag[15] + b[4]*idiag[20]; 578b01c7715SBarry Smith x[1] = b[0]*idiag[1] + b[1]*idiag[6] + b[2]*idiag[11] + b[3]*idiag[16] + b[4]*idiag[21]; 579b01c7715SBarry Smith x[2] = b[0]*idiag[2] + b[1]*idiag[7] + b[2]*idiag[12] + b[3]*idiag[17] + b[4]*idiag[22]; 580b01c7715SBarry Smith x[3] = b[0]*idiag[3] + b[1]*idiag[8] + b[2]*idiag[13] + b[3]*idiag[18] + b[4]*idiag[23]; 581b01c7715SBarry Smith x[4] = b[0]*idiag[4] + b[1]*idiag[9] + b[2]*idiag[14] + b[3]*idiag[19] + b[4]*idiag[24]; 582b01c7715SBarry Smith i2 = 5; 583b01c7715SBarry Smith idiag += 25; 584b01c7715SBarry Smith for (i=1; i<m; i++) { 585b01c7715SBarry Smith v = aa + 25*ai[i]; 586b01c7715SBarry Smith vi = aj + ai[i]; 587b01c7715SBarry Smith nz = diag[i] - ai[i]; 588b01c7715SBarry Smith s1 = b[i2]; s2 = b[i2+1]; s3 = b[i2+2]; s4 = b[i2+3]; s5 = b[i2+4]; 589b01c7715SBarry Smith while (nz--) { 590b01c7715SBarry Smith idx = 5*(*vi++); 591b01c7715SBarry Smith x1 = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx]; 592b01c7715SBarry Smith s1 -= v[0]*x1 + v[5]*x2 + v[10]*x3 + v[15]*x4 + v[20]*x5; 593b01c7715SBarry Smith s2 -= v[1]*x1 + v[6]*x2 + v[11]*x3 + v[16]*x4 + v[21]*x5; 594b01c7715SBarry Smith s3 -= v[2]*x1 + v[7]*x2 + v[12]*x3 + v[17]*x4 + v[22]*x5; 595b01c7715SBarry Smith s4 -= v[3]*x1 + v[8]*x2 + v[13]*x3 + v[18]*x4 + v[23]*x5; 596b01c7715SBarry Smith s5 -= v[4]*x1 + v[9]*x2 + v[14]*x3 + v[19]*x4 + v[24]*x5; 597b01c7715SBarry Smith v += 25; 598b01c7715SBarry Smith } 599b01c7715SBarry Smith x[i2] = idiag[0]*s1 + idiag[5]*s2 + idiag[10]*s3 + idiag[15]*s4 + idiag[20]*s5; 600b01c7715SBarry Smith x[i2+1] = idiag[1]*s1 + idiag[6]*s2 + idiag[11]*s3 + idiag[16]*s4 + idiag[21]*s5; 601b01c7715SBarry Smith x[i2+2] = idiag[2]*s1 + idiag[7]*s2 + idiag[12]*s3 + idiag[17]*s4 + idiag[22]*s5; 602b01c7715SBarry Smith x[i2+3] = idiag[3]*s1 + idiag[8]*s2 + idiag[13]*s3 + idiag[18]*s4 + idiag[23]*s5; 603b01c7715SBarry Smith x[i2+4] = idiag[4]*s1 + idiag[9]*s2 + idiag[14]*s3 + idiag[19]*s4 + idiag[24]*s5; 604b01c7715SBarry Smith idiag += 25; 605b01c7715SBarry Smith i2 += 5; 606b01c7715SBarry Smith } 607b01c7715SBarry Smith /* for logging purposes assume number of nonzero in lower half is 1/2 of total */ 608efee365bSSatish Balay ierr = PetscLogFlops(25*(a->nz));CHKERRQ(ierr); 609b01c7715SBarry Smith } 610b01c7715SBarry Smith if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) && 611b01c7715SBarry Smith (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) { 612b01c7715SBarry Smith i2 = 0; 613b01c7715SBarry Smith mdiag = a->idiag+25*a->mbs; 614b01c7715SBarry Smith for (i=0; i<m; i++) { 615b01c7715SBarry Smith x1 = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4]; 616b01c7715SBarry Smith x[i2] = mdiag[0]*x1 + mdiag[5]*x2 + mdiag[10]*x3 + mdiag[15]*x4 + mdiag[20]*x5; 617b01c7715SBarry Smith x[i2+1] = mdiag[1]*x1 + mdiag[6]*x2 + mdiag[11]*x3 + mdiag[16]*x4 + mdiag[21]*x5; 618b01c7715SBarry Smith x[i2+2] = mdiag[2]*x1 + mdiag[7]*x2 + mdiag[12]*x3 + mdiag[17]*x4 + mdiag[22]*x5; 619b01c7715SBarry Smith x[i2+3] = mdiag[3]*x1 + mdiag[8]*x2 + mdiag[13]*x3 + mdiag[18]*x4 + mdiag[23]*x5; 620b01c7715SBarry Smith x[i2+4] = mdiag[4]*x1 + mdiag[9]*x2 + mdiag[14]*x3 + mdiag[19]*x4 + mdiag[24]*x5; 621b01c7715SBarry Smith mdiag += 25; 622b01c7715SBarry Smith i2 += 5; 623b01c7715SBarry Smith } 624efee365bSSatish Balay ierr = PetscLogFlops(45*m);CHKERRQ(ierr); 625b01c7715SBarry Smith } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) { 626899cda47SBarry Smith ierr = PetscMemcpy(x,b,A->rmap.N*sizeof(PetscScalar));CHKERRQ(ierr); 627b01c7715SBarry Smith } 628b01c7715SBarry Smith if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){ 629b01c7715SBarry Smith idiag = a->idiag+25*a->mbs - 25; 630b01c7715SBarry Smith i2 = 5*m - 5; 631b01c7715SBarry Smith x1 = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4]; 632b01c7715SBarry Smith x[i2] = idiag[0]*x1 + idiag[5]*x2 + idiag[10]*x3 + idiag[15]*x4 + idiag[20]*x5; 633b01c7715SBarry Smith x[i2+1] = idiag[1]*x1 + idiag[6]*x2 + idiag[11]*x3 + idiag[16]*x4 + idiag[21]*x5; 634b01c7715SBarry Smith x[i2+2] = idiag[2]*x1 + idiag[7]*x2 + idiag[12]*x3 + idiag[17]*x4 + idiag[22]*x5; 635b01c7715SBarry Smith x[i2+3] = idiag[3]*x1 + idiag[8]*x2 + idiag[13]*x3 + idiag[18]*x4 + idiag[23]*x5; 636b01c7715SBarry Smith x[i2+4] = idiag[4]*x1 + idiag[9]*x2 + idiag[14]*x3 + idiag[19]*x4 + idiag[24]*x5; 637b01c7715SBarry Smith idiag -= 25; 638b01c7715SBarry Smith i2 -= 5; 639b01c7715SBarry Smith for (i=m-2; i>=0; i--) { 640b01c7715SBarry Smith v = aa + 25*(diag[i]+1); 641b01c7715SBarry Smith vi = aj + diag[i] + 1; 642b01c7715SBarry Smith nz = ai[i+1] - diag[i] - 1; 643b01c7715SBarry Smith s1 = x[i2]; s2 = x[i2+1]; s3 = x[i2+2]; s4 = x[i2+3]; s5 = x[i2+4]; 644b01c7715SBarry Smith while (nz--) { 645b01c7715SBarry Smith idx = 5*(*vi++); 646b01c7715SBarry Smith x1 = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx]; 647b01c7715SBarry Smith s1 -= v[0]*x1 + v[5]*x2 + v[10]*x3 + v[15]*x4 + v[20]*x5; 648b01c7715SBarry Smith s2 -= v[1]*x1 + v[6]*x2 + v[11]*x3 + v[16]*x4 + v[21]*x5; 649b01c7715SBarry Smith s3 -= v[2]*x1 + v[7]*x2 + v[12]*x3 + v[17]*x4 + v[22]*x5; 650b01c7715SBarry Smith s4 -= v[3]*x1 + v[8]*x2 + v[13]*x3 + v[18]*x4 + v[23]*x5; 651b01c7715SBarry Smith s5 -= v[4]*x1 + v[9]*x2 + v[14]*x3 + v[19]*x4 + v[24]*x5; 652b01c7715SBarry Smith v += 25; 653b01c7715SBarry Smith } 654b01c7715SBarry Smith x[i2] = idiag[0]*s1 + idiag[5]*s2 + idiag[10]*s3 + idiag[15]*s4 + idiag[20]*s5; 655b01c7715SBarry Smith x[i2+1] = idiag[1]*s1 + idiag[6]*s2 + idiag[11]*s3 + idiag[16]*s4 + idiag[21]*s5; 656b01c7715SBarry Smith x[i2+2] = idiag[2]*s1 + idiag[7]*s2 + idiag[12]*s3 + idiag[17]*s4 + idiag[22]*s5; 657b01c7715SBarry Smith x[i2+3] = idiag[3]*s1 + idiag[8]*s2 + idiag[13]*s3 + idiag[18]*s4 + idiag[23]*s5; 658b01c7715SBarry Smith x[i2+4] = idiag[4]*s1 + idiag[9]*s2 + idiag[14]*s3 + idiag[19]*s4 + idiag[24]*s5; 659b01c7715SBarry Smith idiag -= 25; 660b01c7715SBarry Smith i2 -= 5; 661b01c7715SBarry Smith } 662efee365bSSatish Balay ierr = PetscLogFlops(25*(a->nz));CHKERRQ(ierr); 663b01c7715SBarry Smith } 664b01c7715SBarry Smith } else { 665634064b4SBarry Smith SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess"); 666b01c7715SBarry Smith } 6671ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 6681ebc52fbSHong Zhang ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 669b01c7715SBarry Smith PetscFunctionReturn(0); 670b01c7715SBarry Smith } 671b01c7715SBarry Smith 6726d3beeddSMatthew Knepley #undef __FUNCT__ 6736d3beeddSMatthew Knepley #define __FUNCT__ "MatPBRelax_SeqBAIJ_6" 6746d3beeddSMatthew Knepley PetscErrorCode MatPBRelax_SeqBAIJ_6(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 6756d3beeddSMatthew Knepley { 6766d3beeddSMatthew Knepley Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 6776d3beeddSMatthew Knepley PetscScalar *x,x1,x2,x3,x4,x5,x6,s1,s2,s3,s4,s5,s6; 678*dd6ea824SBarry Smith const MatScalar *v,*aa = a->a, *idiag,*mdiag; 679*dd6ea824SBarry Smith const PetscScalar *b; 6806d3beeddSMatthew Knepley PetscErrorCode ierr; 6816d3beeddSMatthew Knepley PetscInt m = a->mbs,i,i2,nz,idx; 6826d3beeddSMatthew Knepley const PetscInt *diag,*ai = a->i,*aj = a->j,*vi; 6836d3beeddSMatthew Knepley 6846d3beeddSMatthew Knepley PetscFunctionBegin; 6856d3beeddSMatthew Knepley if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat"); 6866d3beeddSMatthew Knepley its = its*lits; 6876d3beeddSMatthew Knepley if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 6886d3beeddSMatthew Knepley if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift"); 6896d3beeddSMatthew Knepley if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor"); 6906d3beeddSMatthew Knepley if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts"); 6916d3beeddSMatthew Knepley if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations"); 6926d3beeddSMatthew Knepley 6936d3beeddSMatthew Knepley if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);} 6946d3beeddSMatthew Knepley 6956d3beeddSMatthew Knepley diag = a->diag; 6966d3beeddSMatthew Knepley idiag = a->idiag; 6976d3beeddSMatthew Knepley ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 6986d3beeddSMatthew Knepley ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 6996d3beeddSMatthew Knepley 7006d3beeddSMatthew Knepley if (flag & SOR_ZERO_INITIAL_GUESS) { 7016d3beeddSMatthew Knepley if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){ 7026d3beeddSMatthew Knepley x[0] = b[0]*idiag[0] + b[1]*idiag[6] + b[2]*idiag[12] + b[3]*idiag[18] + b[4]*idiag[24] + b[5]*idiag[30]; 7036d3beeddSMatthew Knepley x[1] = b[0]*idiag[1] + b[1]*idiag[7] + b[2]*idiag[13] + b[3]*idiag[19] + b[4]*idiag[25] + b[5]*idiag[31]; 7046d3beeddSMatthew Knepley x[2] = b[0]*idiag[2] + b[1]*idiag[8] + b[2]*idiag[14] + b[3]*idiag[20] + b[4]*idiag[26] + b[5]*idiag[32]; 7056d3beeddSMatthew Knepley x[3] = b[0]*idiag[3] + b[1]*idiag[9] + b[2]*idiag[15] + b[3]*idiag[21] + b[4]*idiag[27] + b[5]*idiag[33]; 7066d3beeddSMatthew Knepley x[4] = b[0]*idiag[4] + b[1]*idiag[10] + b[2]*idiag[16] + b[3]*idiag[22] + b[4]*idiag[28] + b[5]*idiag[34]; 7076d3beeddSMatthew Knepley x[5] = b[0]*idiag[5] + b[1]*idiag[11] + b[2]*idiag[17] + b[3]*idiag[23] + b[4]*idiag[29] + b[5]*idiag[35]; 7086d3beeddSMatthew Knepley i2 = 6; 7096d3beeddSMatthew Knepley idiag += 36; 7106d3beeddSMatthew Knepley for (i=1; i<m; i++) { 7116d3beeddSMatthew Knepley v = aa + 36*ai[i]; 7126d3beeddSMatthew Knepley vi = aj + ai[i]; 7136d3beeddSMatthew Knepley nz = diag[i] - ai[i]; 7146d3beeddSMatthew Knepley s1 = b[i2]; s2 = b[i2+1]; s3 = b[i2+2]; s4 = b[i2+3]; s5 = b[i2+4]; s6 = b[i2+5]; 7156d3beeddSMatthew Knepley while (nz--) { 7166d3beeddSMatthew Knepley idx = 6*(*vi++); 7176d3beeddSMatthew Knepley x1 = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx]; x6 = x[5+idx]; 7186d3beeddSMatthew Knepley s1 -= v[0]*x1 + v[6]*x2 + v[12]*x3 + v[18]*x4 + v[24]*x5 + v[30]*x6; 7196d3beeddSMatthew Knepley s2 -= v[1]*x1 + v[7]*x2 + v[13]*x3 + v[19]*x4 + v[25]*x5 + v[31]*x6; 7206d3beeddSMatthew Knepley s3 -= v[2]*x1 + v[8]*x2 + v[14]*x3 + v[20]*x4 + v[26]*x5 + v[32]*x6; 7216d3beeddSMatthew Knepley s4 -= v[3]*x1 + v[9]*x2 + v[15]*x3 + v[21]*x4 + v[27]*x5 + v[33]*x6; 7226d3beeddSMatthew Knepley s5 -= v[4]*x1 + v[10]*x2 + v[16]*x3 + v[22]*x4 + v[28]*x5 + v[34]*x6; 7236d3beeddSMatthew Knepley s6 -= v[5]*x1 + v[11]*x2 + v[17]*x3 + v[23]*x4 + v[29]*x5 + v[35]*x6; 7246d3beeddSMatthew Knepley v += 36; 7256d3beeddSMatthew Knepley } 7266d3beeddSMatthew Knepley x[i2] = idiag[0]*s1 + idiag[6]*s2 + idiag[12]*s3 + idiag[18]*s4 + idiag[24]*s5 + idiag[30]*s6; 7276d3beeddSMatthew Knepley x[i2+1] = idiag[1]*s1 + idiag[7]*s2 + idiag[13]*s3 + idiag[19]*s4 + idiag[25]*s5 + idiag[31]*s6; 7286d3beeddSMatthew Knepley x[i2+2] = idiag[2]*s1 + idiag[8]*s2 + idiag[14]*s3 + idiag[20]*s4 + idiag[26]*s5 + idiag[32]*s6; 7296d3beeddSMatthew Knepley x[i2+3] = idiag[3]*s1 + idiag[9]*s2 + idiag[15]*s3 + idiag[21]*s4 + idiag[27]*s5 + idiag[33]*s6; 7306d3beeddSMatthew Knepley x[i2+4] = idiag[4]*s1 + idiag[10]*s2 + idiag[16]*s3 + idiag[22]*s4 + idiag[28]*s5 + idiag[34]*s6; 7316d3beeddSMatthew Knepley x[i2+5] = idiag[5]*s1 + idiag[11]*s2 + idiag[17]*s3 + idiag[23]*s4 + idiag[29]*s5 + idiag[35]*s6; 7326d3beeddSMatthew Knepley idiag += 36; 7336d3beeddSMatthew Knepley i2 += 6; 7346d3beeddSMatthew Knepley } 7356d3beeddSMatthew Knepley /* for logging purposes assume number of nonzero in lower half is 1/2 of total */ 7366d3beeddSMatthew Knepley ierr = PetscLogFlops(36*(a->nz));CHKERRQ(ierr); 7376d3beeddSMatthew Knepley } 7386d3beeddSMatthew Knepley if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) && 7396d3beeddSMatthew Knepley (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) { 7406d3beeddSMatthew Knepley i2 = 0; 7416d3beeddSMatthew Knepley mdiag = a->idiag+36*a->mbs; 7426d3beeddSMatthew Knepley for (i=0; i<m; i++) { 7436d3beeddSMatthew Knepley x1 = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4]; x6 = x[i2+5]; 7446d3beeddSMatthew Knepley x[i2] = mdiag[0]*x1 + mdiag[6]*x2 + mdiag[12]*x3 + mdiag[18]*x4 + mdiag[24]*x5 + mdiag[30]*x6; 7456d3beeddSMatthew Knepley x[i2+1] = mdiag[1]*x1 + mdiag[7]*x2 + mdiag[13]*x3 + mdiag[19]*x4 + mdiag[25]*x5 + mdiag[31]*x6; 7466d3beeddSMatthew Knepley x[i2+2] = mdiag[2]*x1 + mdiag[8]*x2 + mdiag[14]*x3 + mdiag[20]*x4 + mdiag[26]*x5 + mdiag[32]*x6; 7476d3beeddSMatthew Knepley x[i2+3] = mdiag[3]*x1 + mdiag[9]*x2 + mdiag[15]*x3 + mdiag[21]*x4 + mdiag[27]*x5 + mdiag[33]*x6; 7486d3beeddSMatthew Knepley x[i2+4] = mdiag[4]*x1 + mdiag[10]*x2 + mdiag[16]*x3 + mdiag[22]*x4 + mdiag[28]*x5 + mdiag[34]*x6; 7496d3beeddSMatthew Knepley x[i2+5] = mdiag[5]*x1 + mdiag[11]*x2 + mdiag[17]*x3 + mdiag[23]*x4 + mdiag[29]*x5 + mdiag[35]*x6; 7506d3beeddSMatthew Knepley mdiag += 36; 7516d3beeddSMatthew Knepley i2 += 6; 7526d3beeddSMatthew Knepley } 7536d3beeddSMatthew Knepley ierr = PetscLogFlops(60*m);CHKERRQ(ierr); 7546d3beeddSMatthew Knepley } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) { 7556d3beeddSMatthew Knepley ierr = PetscMemcpy(x,b,A->rmap.N*sizeof(PetscScalar));CHKERRQ(ierr); 7566d3beeddSMatthew Knepley } 7576d3beeddSMatthew Knepley if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){ 7586d3beeddSMatthew Knepley idiag = a->idiag+36*a->mbs - 36; 7596d3beeddSMatthew Knepley i2 = 6*m - 6; 7606d3beeddSMatthew Knepley x1 = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4]; x6 = x[i2+5]; 7616d3beeddSMatthew Knepley x[i2] = idiag[0]*x1 + idiag[6]*x2 + idiag[12]*x3 + idiag[18]*x4 + idiag[24]*x5 + idiag[30]*x6; 7626d3beeddSMatthew Knepley x[i2+1] = idiag[1]*x1 + idiag[7]*x2 + idiag[13]*x3 + idiag[19]*x4 + idiag[25]*x5 + idiag[31]*x6; 7636d3beeddSMatthew Knepley x[i2+2] = idiag[2]*x1 + idiag[8]*x2 + idiag[14]*x3 + idiag[20]*x4 + idiag[26]*x5 + idiag[32]*x6; 7646d3beeddSMatthew Knepley x[i2+3] = idiag[3]*x1 + idiag[9]*x2 + idiag[15]*x3 + idiag[21]*x4 + idiag[27]*x5 + idiag[33]*x6; 7656d3beeddSMatthew Knepley x[i2+4] = idiag[4]*x1 + idiag[10]*x2 + idiag[16]*x3 + idiag[22]*x4 + idiag[28]*x5 + idiag[34]*x6; 7666d3beeddSMatthew Knepley x[i2+5] = idiag[5]*x1 + idiag[11]*x2 + idiag[17]*x3 + idiag[23]*x4 + idiag[29]*x5 + idiag[35]*x6; 7676d3beeddSMatthew Knepley idiag -= 36; 7686d3beeddSMatthew Knepley i2 -= 6; 7696d3beeddSMatthew Knepley for (i=m-2; i>=0; i--) { 7706d3beeddSMatthew Knepley v = aa + 36*(diag[i]+1); 7716d3beeddSMatthew Knepley vi = aj + diag[i] + 1; 7726d3beeddSMatthew Knepley nz = ai[i+1] - diag[i] - 1; 7736d3beeddSMatthew Knepley s1 = x[i2]; s2 = x[i2+1]; s3 = x[i2+2]; s4 = x[i2+3]; s5 = x[i2+4]; s6 = x[i2+5]; 7746d3beeddSMatthew Knepley while (nz--) { 7756d3beeddSMatthew Knepley idx = 6*(*vi++); 7766d3beeddSMatthew Knepley x1 = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx]; x6 = x[5+idx]; 7776d3beeddSMatthew Knepley s1 -= v[0]*x1 + v[6]*x2 + v[12]*x3 + v[18]*x4 + v[24]*x5 + v[30]*x6; 7786d3beeddSMatthew Knepley s2 -= v[1]*x1 + v[7]*x2 + v[13]*x3 + v[19]*x4 + v[25]*x5 + v[31]*x6; 7796d3beeddSMatthew Knepley s3 -= v[2]*x1 + v[8]*x2 + v[14]*x3 + v[20]*x4 + v[26]*x5 + v[32]*x6; 7806d3beeddSMatthew Knepley s4 -= v[3]*x1 + v[9]*x2 + v[15]*x3 + v[21]*x4 + v[27]*x5 + v[33]*x6; 7816d3beeddSMatthew Knepley s5 -= v[4]*x1 + v[10]*x2 + v[16]*x3 + v[22]*x4 + v[28]*x5 + v[34]*x6; 7826d3beeddSMatthew Knepley s6 -= v[5]*x1 + v[11]*x2 + v[17]*x3 + v[23]*x4 + v[29]*x5 + v[35]*x6; 7836d3beeddSMatthew Knepley v += 36; 7846d3beeddSMatthew Knepley } 7856d3beeddSMatthew Knepley x[i2] = idiag[0]*s1 + idiag[6]*s2 + idiag[12]*s3 + idiag[18]*s4 + idiag[24]*s5 + idiag[30]*s6; 7866d3beeddSMatthew Knepley x[i2+1] = idiag[1]*s1 + idiag[7]*s2 + idiag[13]*s3 + idiag[19]*s4 + idiag[25]*s5 + idiag[31]*s6; 7876d3beeddSMatthew Knepley x[i2+2] = idiag[2]*s1 + idiag[8]*s2 + idiag[14]*s3 + idiag[20]*s4 + idiag[26]*s5 + idiag[32]*s6; 7886d3beeddSMatthew Knepley x[i2+3] = idiag[3]*s1 + idiag[9]*s2 + idiag[15]*s3 + idiag[21]*s4 + idiag[27]*s5 + idiag[33]*s6; 7896d3beeddSMatthew Knepley x[i2+4] = idiag[4]*s1 + idiag[10]*s2 + idiag[16]*s3 + idiag[22]*s4 + idiag[28]*s5 + idiag[34]*s6; 7906d3beeddSMatthew Knepley x[i2+5] = idiag[5]*s1 + idiag[11]*s2 + idiag[17]*s3 + idiag[23]*s4 + idiag[29]*s5 + idiag[35]*s6; 7916d3beeddSMatthew Knepley idiag -= 36; 7926d3beeddSMatthew Knepley i2 -= 6; 7936d3beeddSMatthew Knepley } 7946d3beeddSMatthew Knepley ierr = PetscLogFlops(36*(a->nz));CHKERRQ(ierr); 7956d3beeddSMatthew Knepley } 7966d3beeddSMatthew Knepley } else { 7976d3beeddSMatthew Knepley SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess"); 7986d3beeddSMatthew Knepley } 7996d3beeddSMatthew Knepley ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 8006d3beeddSMatthew Knepley ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 8016d3beeddSMatthew Knepley PetscFunctionReturn(0); 8026d3beeddSMatthew Knepley } 8036d3beeddSMatthew Knepley 8046d3beeddSMatthew Knepley #undef __FUNCT__ 8056d3beeddSMatthew Knepley #define __FUNCT__ "MatPBRelax_SeqBAIJ_7" 8066d3beeddSMatthew Knepley PetscErrorCode MatPBRelax_SeqBAIJ_7(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 8076d3beeddSMatthew Knepley { 8086d3beeddSMatthew Knepley Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 8096d3beeddSMatthew Knepley PetscScalar *x,x1,x2,x3,x4,x5,x6,x7,s1,s2,s3,s4,s5,s6,s7; 810*dd6ea824SBarry Smith const MatScalar *v,*aa = a->a, *idiag,*mdiag; 811*dd6ea824SBarry Smith const PetscScalar *b; 8126d3beeddSMatthew Knepley PetscErrorCode ierr; 8136d3beeddSMatthew Knepley PetscInt m = a->mbs,i,i2,nz,idx; 8146d3beeddSMatthew Knepley const PetscInt *diag,*ai = a->i,*aj = a->j,*vi; 8156d3beeddSMatthew Knepley 8166d3beeddSMatthew Knepley PetscFunctionBegin; 8176d3beeddSMatthew Knepley if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat"); 8186d3beeddSMatthew Knepley its = its*lits; 8196d3beeddSMatthew Knepley if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 8206d3beeddSMatthew Knepley if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift"); 8216d3beeddSMatthew Knepley if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor"); 8226d3beeddSMatthew Knepley if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts"); 8236d3beeddSMatthew Knepley if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations"); 8246d3beeddSMatthew Knepley 8256d3beeddSMatthew Knepley if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);} 8266d3beeddSMatthew Knepley 8276d3beeddSMatthew Knepley diag = a->diag; 8286d3beeddSMatthew Knepley idiag = a->idiag; 8296d3beeddSMatthew Knepley ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 8306d3beeddSMatthew Knepley ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 8316d3beeddSMatthew Knepley 8326d3beeddSMatthew Knepley if (flag & SOR_ZERO_INITIAL_GUESS) { 8336d3beeddSMatthew Knepley if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){ 8346d3beeddSMatthew Knepley x[0] = b[0]*idiag[0] + b[1]*idiag[7] + b[2]*idiag[14] + b[3]*idiag[21] + b[4]*idiag[28] + b[5]*idiag[35] + b[6]*idiag[42]; 8356d3beeddSMatthew Knepley x[1] = b[0]*idiag[1] + b[1]*idiag[8] + b[2]*idiag[15] + b[3]*idiag[22] + b[4]*idiag[29] + b[5]*idiag[36] + b[6]*idiag[43]; 8366d3beeddSMatthew Knepley x[2] = b[0]*idiag[2] + b[1]*idiag[9] + b[2]*idiag[16] + b[3]*idiag[23] + b[4]*idiag[30] + b[5]*idiag[37] + b[6]*idiag[44]; 8376d3beeddSMatthew Knepley x[3] = b[0]*idiag[3] + b[1]*idiag[10] + b[2]*idiag[17] + b[3]*idiag[24] + b[4]*idiag[31] + b[5]*idiag[38] + b[6]*idiag[45]; 8386d3beeddSMatthew Knepley x[4] = b[0]*idiag[4] + b[1]*idiag[11] + b[2]*idiag[18] + b[3]*idiag[25] + b[4]*idiag[32] + b[5]*idiag[39] + b[6]*idiag[46]; 8396d3beeddSMatthew Knepley x[5] = b[0]*idiag[5] + b[1]*idiag[12] + b[2]*idiag[19] + b[3]*idiag[26] + b[4]*idiag[33] + b[5]*idiag[40] + b[6]*idiag[47]; 8406d3beeddSMatthew Knepley x[6] = b[0]*idiag[6] + b[1]*idiag[13] + b[2]*idiag[20] + b[3]*idiag[27] + b[4]*idiag[34] + b[5]*idiag[41] + b[6]*idiag[48]; 8416d3beeddSMatthew Knepley i2 = 7; 8426d3beeddSMatthew Knepley idiag += 49; 8436d3beeddSMatthew Knepley for (i=1; i<m; i++) { 8446d3beeddSMatthew Knepley v = aa + 49*ai[i]; 8456d3beeddSMatthew Knepley vi = aj + ai[i]; 8466d3beeddSMatthew Knepley nz = diag[i] - ai[i]; 8476d3beeddSMatthew Knepley s1 = b[i2]; s2 = b[i2+1]; s3 = b[i2+2]; s4 = b[i2+3]; s5 = b[i2+4]; s6 = b[i2+5]; s7 = b[i2+6]; 8486d3beeddSMatthew Knepley while (nz--) { 8496d3beeddSMatthew Knepley idx = 7*(*vi++); 8506d3beeddSMatthew Knepley x1 = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx]; x6 = x[5+idx]; x7 = x[6+idx]; 8516d3beeddSMatthew Knepley s1 -= v[0]*x1 + v[7]*x2 + v[14]*x3 + v[21]*x4 + v[28]*x5 + v[35]*x6 + v[42]*x7; 8526d3beeddSMatthew Knepley s2 -= v[1]*x1 + v[8]*x2 + v[15]*x3 + v[22]*x4 + v[29]*x5 + v[36]*x6 + v[43]*x7; 8536d3beeddSMatthew Knepley s3 -= v[2]*x1 + v[9]*x2 + v[16]*x3 + v[23]*x4 + v[30]*x5 + v[37]*x6 + v[44]*x7; 8546d3beeddSMatthew Knepley s4 -= v[3]*x1 + v[10]*x2 + v[17]*x3 + v[24]*x4 + v[31]*x5 + v[38]*x6 + v[45]*x7; 8556d3beeddSMatthew Knepley s5 -= v[4]*x1 + v[11]*x2 + v[18]*x3 + v[25]*x4 + v[32]*x5 + v[39]*x6 + v[46]*x7; 8566d3beeddSMatthew Knepley s6 -= v[5]*x1 + v[12]*x2 + v[19]*x3 + v[26]*x4 + v[33]*x5 + v[40]*x6 + v[47]*x7; 8576d3beeddSMatthew Knepley s7 -= v[6]*x1 + v[13]*x2 + v[20]*x3 + v[27]*x4 + v[34]*x5 + v[41]*x6 + v[48]*x7; 8586d3beeddSMatthew Knepley v += 49; 8596d3beeddSMatthew Knepley } 8606d3beeddSMatthew Knepley x[i2] = idiag[0]*s1 + idiag[7]*s2 + idiag[14]*s3 + idiag[21]*s4 + idiag[28]*s5 + idiag[35]*s6 + idiag[42]*s7; 8616d3beeddSMatthew Knepley x[i2+1] = idiag[1]*s1 + idiag[8]*s2 + idiag[15]*s3 + idiag[22]*s4 + idiag[29]*s5 + idiag[36]*s6 + idiag[43]*s7; 8626d3beeddSMatthew Knepley x[i2+2] = idiag[2]*s1 + idiag[9]*s2 + idiag[16]*s3 + idiag[23]*s4 + idiag[30]*s5 + idiag[37]*s6 + idiag[44]*s7; 8636d3beeddSMatthew Knepley x[i2+3] = idiag[3]*s1 + idiag[10]*s2 + idiag[17]*s3 + idiag[24]*s4 + idiag[31]*s5 + idiag[38]*s6 + idiag[45]*s7; 8646d3beeddSMatthew Knepley x[i2+4] = idiag[4]*s1 + idiag[11]*s2 + idiag[18]*s3 + idiag[25]*s4 + idiag[32]*s5 + idiag[39]*s6 + idiag[46]*s7; 8656d3beeddSMatthew Knepley x[i2+5] = idiag[5]*s1 + idiag[12]*s2 + idiag[19]*s3 + idiag[26]*s4 + idiag[33]*s5 + idiag[40]*s6 + idiag[47]*s7; 8666d3beeddSMatthew Knepley x[i2+6] = idiag[6]*s1 + idiag[13]*s2 + idiag[20]*s3 + idiag[27]*s4 + idiag[34]*s5 + idiag[41]*s6 + idiag[48]*s7; 8676d3beeddSMatthew Knepley idiag += 49; 8686d3beeddSMatthew Knepley i2 += 7; 8696d3beeddSMatthew Knepley } 8706d3beeddSMatthew Knepley /* for logging purposes assume number of nonzero in lower half is 1/2 of total */ 8716d3beeddSMatthew Knepley ierr = PetscLogFlops(49*(a->nz));CHKERRQ(ierr); 8726d3beeddSMatthew Knepley } 8736d3beeddSMatthew Knepley if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) && 8746d3beeddSMatthew Knepley (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) { 8756d3beeddSMatthew Knepley i2 = 0; 8766d3beeddSMatthew Knepley mdiag = a->idiag+49*a->mbs; 8776d3beeddSMatthew Knepley for (i=0; i<m; i++) { 8786d3beeddSMatthew Knepley x1 = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4]; x6 = x[i2+5]; x7 = x[i2+6]; 8796d3beeddSMatthew Knepley x[i2] = mdiag[0]*x1 + mdiag[7]*x2 + mdiag[14]*x3 + mdiag[21]*x4 + mdiag[28]*x5 + mdiag[35]*x6 + mdiag[35]*x7; 8806d3beeddSMatthew Knepley x[i2+1] = mdiag[1]*x1 + mdiag[8]*x2 + mdiag[15]*x3 + mdiag[22]*x4 + mdiag[29]*x5 + mdiag[36]*x6 + mdiag[36]*x7; 8816d3beeddSMatthew Knepley x[i2+2] = mdiag[2]*x1 + mdiag[9]*x2 + mdiag[16]*x3 + mdiag[23]*x4 + mdiag[30]*x5 + mdiag[37]*x6 + mdiag[37]*x7; 8826d3beeddSMatthew Knepley x[i2+3] = mdiag[3]*x1 + mdiag[10]*x2 + mdiag[17]*x3 + mdiag[24]*x4 + mdiag[31]*x5 + mdiag[38]*x6 + mdiag[38]*x7; 8836d3beeddSMatthew Knepley x[i2+4] = mdiag[4]*x1 + mdiag[11]*x2 + mdiag[18]*x3 + mdiag[25]*x4 + mdiag[32]*x5 + mdiag[39]*x6 + mdiag[39]*x7; 8846d3beeddSMatthew Knepley x[i2+5] = mdiag[5]*x1 + mdiag[12]*x2 + mdiag[19]*x3 + mdiag[26]*x4 + mdiag[33]*x5 + mdiag[40]*x6 + mdiag[40]*x7; 8856d3beeddSMatthew Knepley x[i2+6] = mdiag[6]*x1 + mdiag[13]*x2 + mdiag[20]*x3 + mdiag[27]*x4 + mdiag[34]*x5 + mdiag[41]*x6 + mdiag[41]*x7; 8866d3beeddSMatthew Knepley mdiag += 36; 8876d3beeddSMatthew Knepley i2 += 6; 8886d3beeddSMatthew Knepley } 8896d3beeddSMatthew Knepley ierr = PetscLogFlops(93*m);CHKERRQ(ierr); 8906d3beeddSMatthew Knepley } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) { 8916d3beeddSMatthew Knepley ierr = PetscMemcpy(x,b,A->rmap.N*sizeof(PetscScalar));CHKERRQ(ierr); 8926d3beeddSMatthew Knepley } 8936d3beeddSMatthew Knepley if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){ 8946d3beeddSMatthew Knepley idiag = a->idiag+49*a->mbs - 49; 8956d3beeddSMatthew Knepley i2 = 7*m - 7; 8966d3beeddSMatthew Knepley x1 = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4]; x6 = x[i2+5]; x7 = x[i2+6]; 8976d3beeddSMatthew Knepley x[i2] = idiag[0]*x1 + idiag[7]*x2 + idiag[14]*x3 + idiag[21]*x4 + idiag[28]*x5 + idiag[35]*x6 + idiag[42]*x7; 8986d3beeddSMatthew Knepley x[i2+1] = idiag[1]*x1 + idiag[8]*x2 + idiag[15]*x3 + idiag[22]*x4 + idiag[29]*x5 + idiag[36]*x6 + idiag[43]*x7; 8996d3beeddSMatthew Knepley x[i2+2] = idiag[2]*x1 + idiag[9]*x2 + idiag[16]*x3 + idiag[23]*x4 + idiag[30]*x5 + idiag[37]*x6 + idiag[44]*x7; 9006d3beeddSMatthew Knepley x[i2+3] = idiag[3]*x1 + idiag[10]*x2 + idiag[17]*x3 + idiag[24]*x4 + idiag[31]*x5 + idiag[38]*x6 + idiag[45]*x7; 9016d3beeddSMatthew Knepley x[i2+4] = idiag[4]*x1 + idiag[11]*x2 + idiag[18]*x3 + idiag[25]*x4 + idiag[32]*x5 + idiag[39]*x6 + idiag[46]*x7; 9026d3beeddSMatthew Knepley x[i2+5] = idiag[5]*x1 + idiag[12]*x2 + idiag[19]*x3 + idiag[26]*x4 + idiag[33]*x5 + idiag[40]*x6 + idiag[47]*x7; 9036d3beeddSMatthew Knepley x[i2+6] = idiag[6]*x1 + idiag[13]*x2 + idiag[20]*x3 + idiag[27]*x4 + idiag[34]*x5 + idiag[41]*x6 + idiag[48]*x7; 9046d3beeddSMatthew Knepley idiag -= 49; 9056d3beeddSMatthew Knepley i2 -= 7; 9066d3beeddSMatthew Knepley for (i=m-2; i>=0; i--) { 9076d3beeddSMatthew Knepley v = aa + 49*(diag[i]+1); 9086d3beeddSMatthew Knepley vi = aj + diag[i] + 1; 9096d3beeddSMatthew Knepley nz = ai[i+1] - diag[i] - 1; 9106d3beeddSMatthew Knepley s1 = x[i2]; s2 = x[i2+1]; s3 = x[i2+2]; s4 = x[i2+3]; s5 = x[i2+4]; s6 = x[i2+5]; s7 = x[i2+6]; 9116d3beeddSMatthew Knepley while (nz--) { 9126d3beeddSMatthew Knepley idx = 7*(*vi++); 9136d3beeddSMatthew Knepley x1 = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx]; x6 = x[5+idx]; x7 = x[6+idx]; 9146d3beeddSMatthew Knepley s1 -= v[0]*x1 + v[7]*x2 + v[14]*x3 + v[21]*x4 + v[28]*x5 + v[35]*x6 + v[42]*x7; 9156d3beeddSMatthew Knepley s2 -= v[1]*x1 + v[8]*x2 + v[15]*x3 + v[22]*x4 + v[29]*x5 + v[36]*x6 + v[43]*x7; 9166d3beeddSMatthew Knepley s3 -= v[2]*x1 + v[9]*x2 + v[16]*x3 + v[23]*x4 + v[30]*x5 + v[37]*x6 + v[44]*x7; 9176d3beeddSMatthew Knepley s4 -= v[3]*x1 + v[10]*x2 + v[17]*x3 + v[24]*x4 + v[31]*x5 + v[38]*x6 + v[45]*x7; 9186d3beeddSMatthew Knepley s5 -= v[4]*x1 + v[11]*x2 + v[18]*x3 + v[25]*x4 + v[32]*x5 + v[39]*x6 + v[46]*x7; 9196d3beeddSMatthew Knepley s6 -= v[5]*x1 + v[12]*x2 + v[19]*x3 + v[26]*x4 + v[33]*x5 + v[40]*x6 + v[47]*x7; 9206d3beeddSMatthew Knepley s7 -= v[6]*x1 + v[13]*x2 + v[20]*x3 + v[27]*x4 + v[34]*x5 + v[41]*x6 + v[48]*x7; 9216d3beeddSMatthew Knepley v += 49; 9226d3beeddSMatthew Knepley } 9236d3beeddSMatthew Knepley x[i2] = idiag[0]*s1 + idiag[7]*s2 + idiag[14]*s3 + idiag[21]*s4 + idiag[28]*s5 + idiag[35]*s6 + idiag[42]*s7; 9246d3beeddSMatthew Knepley x[i2+1] = idiag[1]*s1 + idiag[8]*s2 + idiag[15]*s3 + idiag[22]*s4 + idiag[29]*s5 + idiag[36]*s6 + idiag[43]*s7; 9256d3beeddSMatthew Knepley x[i2+2] = idiag[2]*s1 + idiag[9]*s2 + idiag[16]*s3 + idiag[23]*s4 + idiag[30]*s5 + idiag[37]*s6 + idiag[44]*s7; 9266d3beeddSMatthew Knepley x[i2+3] = idiag[3]*s1 + idiag[10]*s2 + idiag[17]*s3 + idiag[24]*s4 + idiag[31]*s5 + idiag[38]*s6 + idiag[45]*s7; 9276d3beeddSMatthew Knepley x[i2+4] = idiag[4]*s1 + idiag[11]*s2 + idiag[18]*s3 + idiag[25]*s4 + idiag[32]*s5 + idiag[39]*s6 + idiag[46]*s7; 9286d3beeddSMatthew Knepley x[i2+5] = idiag[5]*s1 + idiag[12]*s2 + idiag[19]*s3 + idiag[26]*s4 + idiag[33]*s5 + idiag[40]*s6 + idiag[47]*s7; 9296d3beeddSMatthew Knepley x[i2+6] = idiag[6]*s1 + idiag[13]*s2 + idiag[20]*s3 + idiag[27]*s4 + idiag[34]*s5 + idiag[41]*s6 + idiag[48]*s7; 9306d3beeddSMatthew Knepley idiag -= 49; 9316d3beeddSMatthew Knepley i2 -= 7; 9326d3beeddSMatthew Knepley } 9336d3beeddSMatthew Knepley ierr = PetscLogFlops(49*(a->nz));CHKERRQ(ierr); 9346d3beeddSMatthew Knepley } 9356d3beeddSMatthew Knepley } else { 9366d3beeddSMatthew Knepley SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess"); 9376d3beeddSMatthew Knepley } 9386d3beeddSMatthew Knepley ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 9396d3beeddSMatthew Knepley ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 9406d3beeddSMatthew Knepley PetscFunctionReturn(0); 9416d3beeddSMatthew Knepley } 9426d3beeddSMatthew Knepley 943af674e45SBarry Smith /* 94481824310SBarry Smith Special version for direct calls from Fortran (Used in PETSc-fun3d) 945af674e45SBarry Smith */ 946af674e45SBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS) 947af674e45SBarry Smith #define matsetvaluesblocked4_ MATSETVALUESBLOCKED4 948af674e45SBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 949af674e45SBarry Smith #define matsetvaluesblocked4_ matsetvaluesblocked4 950af674e45SBarry Smith #endif 951af674e45SBarry Smith 9529c8c1041SBarry Smith EXTERN_C_BEGIN 953af674e45SBarry Smith #undef __FUNCT__ 954af674e45SBarry Smith #define __FUNCT__ "matsetvaluesblocked4_" 955be1d678aSKris Buschelman void PETSCMAT_DLLEXPORT matsetvaluesblocked4_(Mat *AA,PetscInt *mm,const PetscInt im[],PetscInt *nn,const PetscInt in[],const PetscScalar v[]) 956af674e45SBarry Smith { 957af674e45SBarry Smith Mat A = *AA; 958af674e45SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 959c1ac3661SBarry Smith PetscInt *rp,k,low,high,t,ii,jj,row,nrow,i,col,l,N,m = *mm,n = *nn; 960c1ac3661SBarry Smith PetscInt *ai=a->i,*ailen=a->ilen; 96117ec6a02SBarry Smith PetscInt *aj=a->j,stepval,lastcol = -1; 962f15d580aSBarry Smith const PetscScalar *value = v; 9634bb09213Spetsc MatScalar *ap,*aa = a->a,*bap; 964af674e45SBarry Smith 965af674e45SBarry Smith PetscFunctionBegin; 9667adad957SLisandro Dalcin if (A->rmap.bs != 4) SETERRABORT(((PetscObject)A)->comm,PETSC_ERR_ARG_WRONG,"Can only be called with a block size of 4"); 967af674e45SBarry Smith stepval = (n-1)*4; 968af674e45SBarry Smith for (k=0; k<m; k++) { /* loop over added rows */ 969af674e45SBarry Smith row = im[k]; 970af674e45SBarry Smith rp = aj + ai[row]; 971af674e45SBarry Smith ap = aa + 16*ai[row]; 972af674e45SBarry Smith nrow = ailen[row]; 973af674e45SBarry Smith low = 0; 97417ec6a02SBarry Smith high = nrow; 975af674e45SBarry Smith for (l=0; l<n; l++) { /* loop over added columns */ 976af674e45SBarry Smith col = in[l]; 97717ec6a02SBarry Smith if (col <= lastcol) low = 0; else high = nrow; 97817ec6a02SBarry Smith lastcol = col; 9791e3347e8SBarry Smith value = v + k*(stepval+4 + l)*4; 980af674e45SBarry Smith while (high-low > 7) { 981af674e45SBarry Smith t = (low+high)/2; 982af674e45SBarry Smith if (rp[t] > col) high = t; 983af674e45SBarry Smith else low = t; 984af674e45SBarry Smith } 985af674e45SBarry Smith for (i=low; i<high; i++) { 986af674e45SBarry Smith if (rp[i] > col) break; 987af674e45SBarry Smith if (rp[i] == col) { 988af674e45SBarry Smith bap = ap + 16*i; 989af674e45SBarry Smith for (ii=0; ii<4; ii++,value+=stepval) { 990af674e45SBarry Smith for (jj=ii; jj<16; jj+=4) { 991af674e45SBarry Smith bap[jj] += *value++; 992af674e45SBarry Smith } 993af674e45SBarry Smith } 994af674e45SBarry Smith goto noinsert2; 995af674e45SBarry Smith } 996af674e45SBarry Smith } 997af674e45SBarry Smith N = nrow++ - 1; 99817ec6a02SBarry Smith high++; /* added new column index thus must search to one higher than before */ 999af674e45SBarry Smith /* shift up all the later entries in this row */ 1000af674e45SBarry Smith for (ii=N; ii>=i; ii--) { 1001af674e45SBarry Smith rp[ii+1] = rp[ii]; 1002a037b02bSBarry Smith PetscMemcpy(ap+16*(ii+1),ap+16*(ii),16*sizeof(MatScalar)); 1003af674e45SBarry Smith } 1004af674e45SBarry Smith if (N >= i) { 1005a037b02bSBarry Smith PetscMemzero(ap+16*i,16*sizeof(MatScalar)); 1006af674e45SBarry Smith } 1007af674e45SBarry Smith rp[i] = col; 1008af674e45SBarry Smith bap = ap + 16*i; 1009af674e45SBarry Smith for (ii=0; ii<4; ii++,value+=stepval) { 1010af674e45SBarry Smith for (jj=ii; jj<16; jj+=4) { 1011af674e45SBarry Smith bap[jj] = *value++; 1012af674e45SBarry Smith } 1013af674e45SBarry Smith } 1014af674e45SBarry Smith noinsert2:; 1015af674e45SBarry Smith low = i; 1016af674e45SBarry Smith } 1017af674e45SBarry Smith ailen[row] = nrow; 1018af674e45SBarry Smith } 1019be1d678aSKris Buschelman PetscFunctionReturnVoid(); 1020af674e45SBarry Smith } 10219c8c1041SBarry Smith EXTERN_C_END 1022af674e45SBarry Smith 1023af674e45SBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS) 1024af674e45SBarry Smith #define matsetvalues4_ MATSETVALUES4 1025af674e45SBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 1026af674e45SBarry Smith #define matsetvalues4_ matsetvalues4 1027af674e45SBarry Smith #endif 1028af674e45SBarry Smith 10299c8c1041SBarry Smith EXTERN_C_BEGIN 1030af674e45SBarry Smith #undef __FUNCT__ 1031af674e45SBarry Smith #define __FUNCT__ "MatSetValues4_" 1032be1d678aSKris Buschelman void PETSCMAT_DLLEXPORT matsetvalues4_(Mat *AA,PetscInt *mm,PetscInt *im,PetscInt *nn,PetscInt *in,PetscScalar *v) 1033af674e45SBarry Smith { 1034af674e45SBarry Smith Mat A = *AA; 1035af674e45SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 1036c1ac3661SBarry Smith PetscInt *rp,k,low,high,t,ii,row,nrow,i,col,l,N,n = *nn,m = *mm; 1037c1ac3661SBarry Smith PetscInt *ai=a->i,*ailen=a->ilen; 1038c1ac3661SBarry Smith PetscInt *aj=a->j,brow,bcol; 103917ec6a02SBarry Smith PetscInt ridx,cidx,lastcol = -1; 1040af674e45SBarry Smith MatScalar *ap,value,*aa=a->a,*bap; 1041af674e45SBarry Smith 1042af674e45SBarry Smith PetscFunctionBegin; 1043af674e45SBarry Smith for (k=0; k<m; k++) { /* loop over added rows */ 1044af674e45SBarry Smith row = im[k]; brow = row/4; 1045af674e45SBarry Smith rp = aj + ai[brow]; 1046af674e45SBarry Smith ap = aa + 16*ai[brow]; 1047af674e45SBarry Smith nrow = ailen[brow]; 1048af674e45SBarry Smith low = 0; 104917ec6a02SBarry Smith high = nrow; 1050af674e45SBarry Smith for (l=0; l<n; l++) { /* loop over added columns */ 1051af674e45SBarry Smith col = in[l]; bcol = col/4; 1052af674e45SBarry Smith ridx = row % 4; cidx = col % 4; 1053af674e45SBarry Smith value = v[l + k*n]; 105417ec6a02SBarry Smith if (col <= lastcol) low = 0; else high = nrow; 105517ec6a02SBarry Smith lastcol = col; 1056af674e45SBarry Smith while (high-low > 7) { 1057af674e45SBarry Smith t = (low+high)/2; 1058af674e45SBarry Smith if (rp[t] > bcol) high = t; 1059af674e45SBarry Smith else low = t; 1060af674e45SBarry Smith } 1061af674e45SBarry Smith for (i=low; i<high; i++) { 1062af674e45SBarry Smith if (rp[i] > bcol) break; 1063af674e45SBarry Smith if (rp[i] == bcol) { 1064af674e45SBarry Smith bap = ap + 16*i + 4*cidx + ridx; 1065af674e45SBarry Smith *bap += value; 1066af674e45SBarry Smith goto noinsert1; 1067af674e45SBarry Smith } 1068af674e45SBarry Smith } 1069af674e45SBarry Smith N = nrow++ - 1; 107017ec6a02SBarry Smith high++; /* added new column thus must search to one higher than before */ 1071af674e45SBarry Smith /* shift up all the later entries in this row */ 1072af674e45SBarry Smith for (ii=N; ii>=i; ii--) { 1073af674e45SBarry Smith rp[ii+1] = rp[ii]; 1074a037b02bSBarry Smith PetscMemcpy(ap+16*(ii+1),ap+16*(ii),16*sizeof(MatScalar)); 1075af674e45SBarry Smith } 1076af674e45SBarry Smith if (N>=i) { 1077a037b02bSBarry Smith PetscMemzero(ap+16*i,16*sizeof(MatScalar)); 1078af674e45SBarry Smith } 1079af674e45SBarry Smith rp[i] = bcol; 1080af674e45SBarry Smith ap[16*i + 4*cidx + ridx] = value; 1081af674e45SBarry Smith noinsert1:; 1082af674e45SBarry Smith low = i; 1083af674e45SBarry Smith } 1084af674e45SBarry Smith ailen[brow] = nrow; 1085af674e45SBarry Smith } 1086be1d678aSKris Buschelman PetscFunctionReturnVoid(); 1087af674e45SBarry Smith } 10889c8c1041SBarry Smith EXTERN_C_END 1089af674e45SBarry Smith 1090be5855fcSBarry Smith /* 1091be5855fcSBarry Smith Checks for missing diagonals 1092be5855fcSBarry Smith */ 10934a2ae208SSatish Balay #undef __FUNCT__ 10944a2ae208SSatish Balay #define __FUNCT__ "MatMissingDiagonal_SeqBAIJ" 10952af78befSBarry Smith PetscErrorCode MatMissingDiagonal_SeqBAIJ(Mat A,PetscTruth *missing,PetscInt *d) 1096be5855fcSBarry Smith { 1097be5855fcSBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 10986849ba73SBarry Smith PetscErrorCode ierr; 1099c1ac3661SBarry Smith PetscInt *diag,*jj = a->j,i; 1100be5855fcSBarry Smith 1101be5855fcSBarry Smith PetscFunctionBegin; 1102c4992f7dSBarry Smith ierr = MatMarkDiagonal_SeqBAIJ(A);CHKERRQ(ierr); 11032af78befSBarry Smith *missing = PETSC_FALSE; 1104883fce79SBarry Smith diag = a->diag; 11050e8e8aceSBarry Smith for (i=0; i<a->mbs; i++) { 1106be5855fcSBarry Smith if (jj[diag[i]] != i) { 11072af78befSBarry Smith *missing = PETSC_TRUE; 11082af78befSBarry Smith if (d) *d = i; 1109be5855fcSBarry Smith } 1110be5855fcSBarry Smith } 1111be5855fcSBarry Smith PetscFunctionReturn(0); 1112be5855fcSBarry Smith } 1113be5855fcSBarry Smith 11144a2ae208SSatish Balay #undef __FUNCT__ 11154a2ae208SSatish Balay #define __FUNCT__ "MatMarkDiagonal_SeqBAIJ" 1116dfbe8321SBarry Smith PetscErrorCode MatMarkDiagonal_SeqBAIJ(Mat A) 1117de6a44a3SBarry Smith { 1118de6a44a3SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 11196849ba73SBarry Smith PetscErrorCode ierr; 112009f38230SBarry Smith PetscInt i,j,m = a->mbs; 1121de6a44a3SBarry Smith 11223a40ed3dSBarry Smith PetscFunctionBegin; 112309f38230SBarry Smith if (!a->diag) { 112409f38230SBarry Smith ierr = PetscMalloc(m*sizeof(PetscInt),&a->diag);CHKERRQ(ierr); 112509f38230SBarry Smith } 11267fc0212eSBarry Smith for (i=0; i<m; i++) { 112709f38230SBarry Smith a->diag[i] = a->i[i+1]; 1128de6a44a3SBarry Smith for (j=a->i[i]; j<a->i[i+1]; j++) { 1129de6a44a3SBarry Smith if (a->j[j] == i) { 113009f38230SBarry Smith a->diag[i] = j; 1131de6a44a3SBarry Smith break; 1132de6a44a3SBarry Smith } 1133de6a44a3SBarry Smith } 1134de6a44a3SBarry Smith } 11353a40ed3dSBarry Smith PetscFunctionReturn(0); 1136de6a44a3SBarry Smith } 11372593348eSBarry Smith 11382593348eSBarry Smith 1139690b6cddSBarry Smith EXTERN PetscErrorCode MatToSymmetricIJ_SeqAIJ(PetscInt,PetscInt*,PetscInt*,PetscInt,PetscInt,PetscInt**,PetscInt**); 11403b2fbd54SBarry Smith 11414a2ae208SSatish Balay #undef __FUNCT__ 11424a2ae208SSatish Balay #define __FUNCT__ "MatGetRowIJ_SeqBAIJ" 11438f7157efSSatish Balay static PetscErrorCode MatGetRowIJ_SeqBAIJ(Mat A,PetscInt oshift,PetscTruth symmetric,PetscTruth blockcompressed,PetscInt *nn,PetscInt *ia[],PetscInt *ja[],PetscTruth *done) 11443b2fbd54SBarry Smith { 11453b2fbd54SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 1146dfbe8321SBarry Smith PetscErrorCode ierr; 11479985e31cSBarry Smith PetscInt i,j,n = a->mbs,nz = a->i[n],bs = A->rmap.bs,nbs = 1,k,l,cnt; 11488f7157efSSatish Balay PetscInt *tia, *tja; 11493b2fbd54SBarry Smith 11503a40ed3dSBarry Smith PetscFunctionBegin; 11513b2fbd54SBarry Smith *nn = n; 11523a40ed3dSBarry Smith if (!ia) PetscFunctionReturn(0); 11533b2fbd54SBarry Smith if (symmetric) { 11548f7157efSSatish Balay ierr = MatToSymmetricIJ_SeqAIJ(n,a->i,a->j,0,0,&tia,&tja);CHKERRQ(ierr); 11553b2fbd54SBarry Smith } else { 11568f7157efSSatish Balay tia = a->i; tja = a->j; 11573b2fbd54SBarry Smith } 11583b2fbd54SBarry Smith 1159ecc77c7aSBarry Smith if (!blockcompressed && bs > 1) { 1160ecc77c7aSBarry Smith (*nn) *= bs; 1161ecc77c7aSBarry Smith nbs = bs; 11628f7157efSSatish Balay /* malloc & create the natural set of indices */ 1163ecc77c7aSBarry Smith ierr = PetscMalloc((n+1)*bs*sizeof(PetscInt),ia);CHKERRQ(ierr); 11649985e31cSBarry Smith if (n) { 1165ecc77c7aSBarry Smith (*ia)[0] = 0; 1166ecc77c7aSBarry Smith for (j=1; j<bs; j++) { 1167ecc77c7aSBarry Smith (*ia)[j] = (tia[1]-tia[0])*bs+(*ia)[j-1]; 1168ecc77c7aSBarry Smith } 11699985e31cSBarry Smith } 1170ecc77c7aSBarry Smith 1171ecc77c7aSBarry Smith for (i=1; i<n; i++) { 1172ecc77c7aSBarry Smith (*ia)[i*bs] = (tia[i]-tia[i-1])*bs + (*ia)[i*bs-1]; 1173ecc77c7aSBarry Smith for (j=1; j<bs; j++) { 1174ecc77c7aSBarry Smith (*ia)[i*bs+j] = (tia[i+1]-tia[i])*bs + (*ia)[i*bs+j-1]; 11758f7157efSSatish Balay } 11768f7157efSSatish Balay } 11779985e31cSBarry Smith if (n) { 1178ecc77c7aSBarry Smith (*ia)[n*bs] = (tia[n]-tia[n-1])*bs + (*ia)[n*bs-1]; 11799985e31cSBarry Smith } 1180ecc77c7aSBarry Smith 11819985e31cSBarry Smith if (ja) { 11829985e31cSBarry Smith ierr = PetscMalloc(nz*bs*bs*sizeof(PetscInt),ja);CHKERRQ(ierr); 11839985e31cSBarry Smith cnt = 0; 11849985e31cSBarry Smith for (i=0; i<n; i++) { 11859985e31cSBarry Smith for (j=0; j<bs; j++) { 11869985e31cSBarry Smith for (k=tia[i]; k<tia[i+1]; k++) { 11879985e31cSBarry Smith for (l=0; l<bs; l++) { 11889985e31cSBarry Smith (*ja)[cnt++] = bs*tja[k] + l; 11899985e31cSBarry Smith } 11909985e31cSBarry Smith } 11919985e31cSBarry Smith } 11929985e31cSBarry Smith } 11939985e31cSBarry Smith } 11949985e31cSBarry Smith 1195ecc77c7aSBarry Smith n *= bs; 1196ecc77c7aSBarry Smith nz *= bs*bs; 11978f7157efSSatish Balay if (symmetric) { /* deallocate memory allocated in MatToSymmetricIJ_SeqAIJ() */ 11988f7157efSSatish Balay ierr = PetscFree(tia);CHKERRQ(ierr); 11998f7157efSSatish Balay ierr = PetscFree(tja);CHKERRQ(ierr); 12008f7157efSSatish Balay } 12018f7157efSSatish Balay } else { 12028f7157efSSatish Balay *ia = tia; 1203ecc77c7aSBarry Smith if (ja) *ja = tja; 12048f7157efSSatish Balay } 12058f7157efSSatish Balay if (oshift == 1) { 1206ecc77c7aSBarry Smith for (i=0; i<n+nbs; i++) (*ia)[i]++; 1207ecc77c7aSBarry Smith if (ja) for (i=0; i<nz; i++) (*ja)[i]++; 12088f7157efSSatish Balay } 12093a40ed3dSBarry Smith PetscFunctionReturn(0); 12103b2fbd54SBarry Smith } 12113b2fbd54SBarry Smith 12124a2ae208SSatish Balay #undef __FUNCT__ 12134a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRowIJ_SeqBAIJ" 12148f7157efSSatish Balay static PetscErrorCode MatRestoreRowIJ_SeqBAIJ(Mat A,PetscInt oshift,PetscTruth symmetric,PetscTruth blockcompressed,PetscInt *nn,PetscInt *ia[],PetscInt *ja[],PetscTruth *done) 12153b2fbd54SBarry Smith { 12163b2fbd54SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 12176849ba73SBarry Smith PetscErrorCode ierr; 12188f7157efSSatish Balay PetscInt i,n = a->mbs,nz = a->i[n]; 12193b2fbd54SBarry Smith 12203a40ed3dSBarry Smith PetscFunctionBegin; 12213a40ed3dSBarry Smith if (!ia) PetscFunctionReturn(0); 1222ecc77c7aSBarry Smith if (!blockcompressed && A->rmap.bs > 1) { 1223ecc77c7aSBarry Smith ierr = PetscFree(*ia);CHKERRQ(ierr); 12249985e31cSBarry Smith if (ja) {ierr = PetscFree(*ja);CHKERRQ(ierr);} 12258f7157efSSatish Balay } else if (symmetric) { 1226606d414cSSatish Balay ierr = PetscFree(*ia);CHKERRQ(ierr); 12279985e31cSBarry Smith if (ja) {ierr = PetscFree(*ja);CHKERRQ(ierr);} 12288f7157efSSatish Balay } else if (oshift == 1) { /* blockcompressed */ 12293b2fbd54SBarry Smith for (i=0; i<n+1; i++) a->i[i]--; 12309985e31cSBarry Smith if (ja) {for (i=0; i<nz; i++) a->j[i]--;} 12313b2fbd54SBarry Smith } 12323a40ed3dSBarry Smith PetscFunctionReturn(0); 12333b2fbd54SBarry Smith } 12343b2fbd54SBarry Smith 12354a2ae208SSatish Balay #undef __FUNCT__ 12364a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_SeqBAIJ" 1237dfbe8321SBarry Smith PetscErrorCode MatDestroy_SeqBAIJ(Mat A) 12382d61bbb3SSatish Balay { 12392d61bbb3SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 1240dfbe8321SBarry Smith PetscErrorCode ierr; 12412d61bbb3SSatish Balay 1242433994e6SBarry Smith PetscFunctionBegin; 1243aa482453SBarry Smith #if defined(PETSC_USE_LOG) 1244899cda47SBarry Smith PetscLogObjectState((PetscObject)A,"Rows=%D, Cols=%D, NZ=%D",A->rmap.N,A->cmap.n,a->nz); 12452d61bbb3SSatish Balay #endif 1246e6b907acSBarry Smith ierr = MatSeqXAIJFreeAIJ(A,&a->a,&a->j,&a->i);CHKERRQ(ierr); 1247c38d4ed2SBarry Smith if (a->row) { 1248c38d4ed2SBarry Smith ierr = ISDestroy(a->row);CHKERRQ(ierr); 1249c38d4ed2SBarry Smith } 1250c38d4ed2SBarry Smith if (a->col) { 1251c38d4ed2SBarry Smith ierr = ISDestroy(a->col);CHKERRQ(ierr); 1252c38d4ed2SBarry Smith } 125305b42c5fSBarry Smith ierr = PetscFree(a->diag);CHKERRQ(ierr); 125405b42c5fSBarry Smith ierr = PetscFree(a->idiag);CHKERRQ(ierr); 125505b42c5fSBarry Smith ierr = PetscFree2(a->imax,a->ilen);CHKERRQ(ierr); 125605b42c5fSBarry Smith ierr = PetscFree(a->solve_work);CHKERRQ(ierr); 125705b42c5fSBarry Smith ierr = PetscFree(a->mult_work);CHKERRQ(ierr); 1258e51c0b9cSSatish Balay if (a->icol) {ierr = ISDestroy(a->icol);CHKERRQ(ierr);} 125905b42c5fSBarry Smith ierr = PetscFree(a->saved_values);CHKERRQ(ierr); 126005b42c5fSBarry Smith ierr = PetscFree(a->xtoy);CHKERRQ(ierr); 126173e7a558SHong Zhang if (a->compressedrow.use){ierr = PetscFree(a->compressedrow.i);} 1262c4319e64SHong Zhang 1263606d414cSSatish Balay ierr = PetscFree(a);CHKERRQ(ierr); 1264901853e0SKris Buschelman 1265dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)A,0);CHKERRQ(ierr); 126643516a2dSKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqBAIJInvertBlockDiagonal_C","",PETSC_NULL);CHKERRQ(ierr); 1267901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)A,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 1268901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)A,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 1269901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqBAIJSetColumnIndices_C","",PETSC_NULL);CHKERRQ(ierr); 1270901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqbaij_seqaij_C","",PETSC_NULL);CHKERRQ(ierr); 1271901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqbaij_seqsbaij_C","",PETSC_NULL);CHKERRQ(ierr); 1272901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 12732d61bbb3SSatish Balay PetscFunctionReturn(0); 12742d61bbb3SSatish Balay } 12752d61bbb3SSatish Balay 12764a2ae208SSatish Balay #undef __FUNCT__ 12774a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_SeqBAIJ" 12784e0d8c25SBarry Smith PetscErrorCode MatSetOption_SeqBAIJ(Mat A,MatOption op,PetscTruth flg) 12792d61bbb3SSatish Balay { 12802d61bbb3SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 128163ba0a88SBarry Smith PetscErrorCode ierr; 12822d61bbb3SSatish Balay 12832d61bbb3SSatish Balay PetscFunctionBegin; 1284aa275fccSKris Buschelman switch (op) { 1285aa275fccSKris Buschelman case MAT_ROW_ORIENTED: 12864e0d8c25SBarry Smith a->roworiented = flg; 1287aa275fccSKris Buschelman break; 1288aa275fccSKris Buschelman case MAT_KEEP_ZEROED_ROWS: 12894e0d8c25SBarry Smith a->keepzeroedrows = flg; 1290aa275fccSKris Buschelman break; 1291512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1292512a5fc5SBarry Smith a->nonew = (flg ? 0 : 1); 1293aa275fccSKris Buschelman break; 1294aa275fccSKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 12954e0d8c25SBarry Smith a->nonew = (flg ? -1 : 0); 1296aa275fccSKris Buschelman break; 1297aa275fccSKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 12984e0d8c25SBarry Smith a->nonew = (flg ? -2 : 0); 1299aa275fccSKris Buschelman break; 13004e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1301aa275fccSKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 1302aa275fccSKris Buschelman case MAT_USE_HASH_TABLE: 1303290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 1304aa275fccSKris Buschelman break; 130577e54ba9SKris Buschelman case MAT_SYMMETRIC: 130677e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 13079a4540c5SBarry Smith case MAT_HERMITIAN: 13089a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 1309290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 131077e54ba9SKris Buschelman break; 1311aa275fccSKris Buschelman default: 1312ad86a440SBarry Smith SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op); 13132d61bbb3SSatish Balay } 13142d61bbb3SSatish Balay PetscFunctionReturn(0); 13152d61bbb3SSatish Balay } 13162d61bbb3SSatish Balay 13174a2ae208SSatish Balay #undef __FUNCT__ 13184a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_SeqBAIJ" 1319c1ac3661SBarry Smith PetscErrorCode MatGetRow_SeqBAIJ(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 13202d61bbb3SSatish Balay { 13212d61bbb3SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 13226849ba73SBarry Smith PetscErrorCode ierr; 1323c1ac3661SBarry Smith PetscInt itmp,i,j,k,M,*ai,*aj,bs,bn,bp,*idx_i,bs2; 13243f1db9ecSBarry Smith MatScalar *aa,*aa_i; 132587828ca2SBarry Smith PetscScalar *v_i; 13262d61bbb3SSatish Balay 13272d61bbb3SSatish Balay PetscFunctionBegin; 1328899cda47SBarry Smith bs = A->rmap.bs; 13292d61bbb3SSatish Balay ai = a->i; 13302d61bbb3SSatish Balay aj = a->j; 13312d61bbb3SSatish Balay aa = a->a; 13322d61bbb3SSatish Balay bs2 = a->bs2; 13332d61bbb3SSatish Balay 1334899cda47SBarry Smith if (row < 0 || row >= A->rmap.N) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Row %D out of range", row); 13352d61bbb3SSatish Balay 13362d61bbb3SSatish Balay bn = row/bs; /* Block number */ 13372d61bbb3SSatish Balay bp = row % bs; /* Block Position */ 13382d61bbb3SSatish Balay M = ai[bn+1] - ai[bn]; 13392d61bbb3SSatish Balay *nz = bs*M; 13402d61bbb3SSatish Balay 13412d61bbb3SSatish Balay if (v) { 13422d61bbb3SSatish Balay *v = 0; 13432d61bbb3SSatish Balay if (*nz) { 134487828ca2SBarry Smith ierr = PetscMalloc((*nz)*sizeof(PetscScalar),v);CHKERRQ(ierr); 13452d61bbb3SSatish Balay for (i=0; i<M; i++) { /* for each block in the block row */ 13462d61bbb3SSatish Balay v_i = *v + i*bs; 13472d61bbb3SSatish Balay aa_i = aa + bs2*(ai[bn] + i); 13482d61bbb3SSatish Balay for (j=bp,k=0; j<bs2; j+=bs,k++) {v_i[k] = aa_i[j];} 13492d61bbb3SSatish Balay } 13502d61bbb3SSatish Balay } 13512d61bbb3SSatish Balay } 13522d61bbb3SSatish Balay 13532d61bbb3SSatish Balay if (idx) { 13542d61bbb3SSatish Balay *idx = 0; 13552d61bbb3SSatish Balay if (*nz) { 1356c1ac3661SBarry Smith ierr = PetscMalloc((*nz)*sizeof(PetscInt),idx);CHKERRQ(ierr); 13572d61bbb3SSatish Balay for (i=0; i<M; i++) { /* for each block in the block row */ 13582d61bbb3SSatish Balay idx_i = *idx + i*bs; 13592d61bbb3SSatish Balay itmp = bs*aj[ai[bn] + i]; 13602d61bbb3SSatish Balay for (j=0; j<bs; j++) {idx_i[j] = itmp++;} 13612d61bbb3SSatish Balay } 13622d61bbb3SSatish Balay } 13632d61bbb3SSatish Balay } 13642d61bbb3SSatish Balay PetscFunctionReturn(0); 13652d61bbb3SSatish Balay } 13662d61bbb3SSatish Balay 13674a2ae208SSatish Balay #undef __FUNCT__ 13684a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_SeqBAIJ" 1369c1ac3661SBarry Smith PetscErrorCode MatRestoreRow_SeqBAIJ(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 13702d61bbb3SSatish Balay { 1371dfbe8321SBarry Smith PetscErrorCode ierr; 1372606d414cSSatish Balay 13732d61bbb3SSatish Balay PetscFunctionBegin; 137405b42c5fSBarry Smith if (idx) {ierr = PetscFree(*idx);CHKERRQ(ierr);} 137505b42c5fSBarry Smith if (v) {ierr = PetscFree(*v);CHKERRQ(ierr);} 13762d61bbb3SSatish Balay PetscFunctionReturn(0); 13772d61bbb3SSatish Balay } 13782d61bbb3SSatish Balay 13794a2ae208SSatish Balay #undef __FUNCT__ 13804a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_SeqBAIJ" 1381dfbe8321SBarry Smith PetscErrorCode MatTranspose_SeqBAIJ(Mat A,Mat *B) 13822d61bbb3SSatish Balay { 13832d61bbb3SSatish Balay Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data; 13842d61bbb3SSatish Balay Mat C; 13856849ba73SBarry Smith PetscErrorCode ierr; 1386899cda47SBarry Smith PetscInt i,j,k,*aj=a->j,*ai=a->i,bs=A->rmap.bs,mbs=a->mbs,nbs=a->nbs,len,*col; 1387c1ac3661SBarry Smith PetscInt *rows,*cols,bs2=a->bs2; 1388*dd6ea824SBarry Smith MatScalar *array; 13892d61bbb3SSatish Balay 13902d61bbb3SSatish Balay PetscFunctionBegin; 139129bbc08cSBarry Smith if (!B && mbs!=nbs) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Square matrix only for in-place"); 1392c1ac3661SBarry Smith ierr = PetscMalloc((1+nbs)*sizeof(PetscInt),&col);CHKERRQ(ierr); 1393c1ac3661SBarry Smith ierr = PetscMemzero(col,(1+nbs)*sizeof(PetscInt));CHKERRQ(ierr); 13942d61bbb3SSatish Balay 13953eda8832SBarry Smith array = a->a; 13962d61bbb3SSatish Balay for (i=0; i<ai[mbs]; i++) col[aj[i]] += 1; 13977adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)A)->comm,&C);CHKERRQ(ierr); 1398899cda47SBarry Smith ierr = MatSetSizes(C,A->cmap.n,A->rmap.N,A->cmap.n,A->rmap.N);CHKERRQ(ierr); 13997adad957SLisandro Dalcin ierr = MatSetType(C,((PetscObject)A)->type_name);CHKERRQ(ierr); 1400ab93d7beSBarry Smith ierr = MatSeqBAIJSetPreallocation_SeqBAIJ(C,bs,PETSC_NULL,col);CHKERRQ(ierr); 1401606d414cSSatish Balay ierr = PetscFree(col);CHKERRQ(ierr); 1402c1ac3661SBarry Smith ierr = PetscMalloc(2*bs*sizeof(PetscInt),&rows);CHKERRQ(ierr); 14032d61bbb3SSatish Balay cols = rows + bs; 14042d61bbb3SSatish Balay for (i=0; i<mbs; i++) { 14052d61bbb3SSatish Balay cols[0] = i*bs; 14062d61bbb3SSatish Balay for (k=1; k<bs; k++) cols[k] = cols[k-1] + 1; 14072d61bbb3SSatish Balay len = ai[i+1] - ai[i]; 14082d61bbb3SSatish Balay for (j=0; j<len; j++) { 14092d61bbb3SSatish Balay rows[0] = (*aj++)*bs; 14102d61bbb3SSatish Balay for (k=1; k<bs; k++) rows[k] = rows[k-1] + 1; 14112d61bbb3SSatish Balay ierr = MatSetValues(C,bs,rows,bs,cols,array,INSERT_VALUES);CHKERRQ(ierr); 14122d61bbb3SSatish Balay array += bs2; 14132d61bbb3SSatish Balay } 14142d61bbb3SSatish Balay } 1415606d414cSSatish Balay ierr = PetscFree(rows);CHKERRQ(ierr); 14162d61bbb3SSatish Balay 14172d61bbb3SSatish Balay ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 14182d61bbb3SSatish Balay ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 14192d61bbb3SSatish Balay 1420c4992f7dSBarry Smith if (B) { 14212d61bbb3SSatish Balay *B = C; 14222d61bbb3SSatish Balay } else { 1423273d9f13SBarry Smith ierr = MatHeaderCopy(A,C);CHKERRQ(ierr); 14242d61bbb3SSatish Balay } 14252d61bbb3SSatish Balay PetscFunctionReturn(0); 14262d61bbb3SSatish Balay } 14272d61bbb3SSatish Balay 14284a2ae208SSatish Balay #undef __FUNCT__ 14294a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqBAIJ_Binary" 14306849ba73SBarry Smith static PetscErrorCode MatView_SeqBAIJ_Binary(Mat A,PetscViewer viewer) 14312593348eSBarry Smith { 1432b6490206SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 14336849ba73SBarry Smith PetscErrorCode ierr; 1434899cda47SBarry Smith PetscInt i,*col_lens,bs = A->rmap.bs,count,*jj,j,k,l,bs2=a->bs2; 1435b24ad042SBarry Smith int fd; 143687828ca2SBarry Smith PetscScalar *aa; 1437ce6f0cecSBarry Smith FILE *file; 14382593348eSBarry Smith 14393a40ed3dSBarry Smith PetscFunctionBegin; 1440b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 1441899cda47SBarry Smith ierr = PetscMalloc((4+A->rmap.N)*sizeof(PetscInt),&col_lens);CHKERRQ(ierr); 1442552e946dSBarry Smith col_lens[0] = MAT_FILE_COOKIE; 14433b2fbd54SBarry Smith 1444899cda47SBarry Smith col_lens[1] = A->rmap.N; 1445899cda47SBarry Smith col_lens[2] = A->cmap.n; 14467e67e3f9SSatish Balay col_lens[3] = a->nz*bs2; 14472593348eSBarry Smith 14482593348eSBarry Smith /* store lengths of each row and write (including header) to file */ 1449b6490206SBarry Smith count = 0; 1450b6490206SBarry Smith for (i=0; i<a->mbs; i++) { 1451b6490206SBarry Smith for (j=0; j<bs; j++) { 1452b6490206SBarry Smith col_lens[4+count++] = bs*(a->i[i+1] - a->i[i]); 1453b6490206SBarry Smith } 14542593348eSBarry Smith } 1455899cda47SBarry Smith ierr = PetscBinaryWrite(fd,col_lens,4+A->rmap.N,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 1456606d414cSSatish Balay ierr = PetscFree(col_lens);CHKERRQ(ierr); 14572593348eSBarry Smith 14582593348eSBarry Smith /* store column indices (zero start index) */ 1459c1ac3661SBarry Smith ierr = PetscMalloc((a->nz+1)*bs2*sizeof(PetscInt),&jj);CHKERRQ(ierr); 1460b6490206SBarry Smith count = 0; 1461b6490206SBarry Smith for (i=0; i<a->mbs; i++) { 1462b6490206SBarry Smith for (j=0; j<bs; j++) { 1463b6490206SBarry Smith for (k=a->i[i]; k<a->i[i+1]; k++) { 1464b6490206SBarry Smith for (l=0; l<bs; l++) { 1465b6490206SBarry Smith jj[count++] = bs*a->j[k] + l; 14662593348eSBarry Smith } 14672593348eSBarry Smith } 1468b6490206SBarry Smith } 1469b6490206SBarry Smith } 14706f69ff64SBarry Smith ierr = PetscBinaryWrite(fd,jj,bs2*a->nz,PETSC_INT,PETSC_FALSE);CHKERRQ(ierr); 1471606d414cSSatish Balay ierr = PetscFree(jj);CHKERRQ(ierr); 14722593348eSBarry Smith 14732593348eSBarry Smith /* store nonzero values */ 147487828ca2SBarry Smith ierr = PetscMalloc((a->nz+1)*bs2*sizeof(PetscScalar),&aa);CHKERRQ(ierr); 1475b6490206SBarry Smith count = 0; 1476b6490206SBarry Smith for (i=0; i<a->mbs; i++) { 1477b6490206SBarry Smith for (j=0; j<bs; j++) { 1478b6490206SBarry Smith for (k=a->i[i]; k<a->i[i+1]; k++) { 1479b6490206SBarry Smith for (l=0; l<bs; l++) { 14807e67e3f9SSatish Balay aa[count++] = a->a[bs2*k + l*bs + j]; 1481b6490206SBarry Smith } 1482b6490206SBarry Smith } 1483b6490206SBarry Smith } 1484b6490206SBarry Smith } 14856f69ff64SBarry Smith ierr = PetscBinaryWrite(fd,aa,bs2*a->nz,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr); 1486606d414cSSatish Balay ierr = PetscFree(aa);CHKERRQ(ierr); 1487ce6f0cecSBarry Smith 1488b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetInfoPointer(viewer,&file);CHKERRQ(ierr); 1489ce6f0cecSBarry Smith if (file) { 1490899cda47SBarry Smith fprintf(file,"-matload_block_size %d\n",(int)A->rmap.bs); 1491ce6f0cecSBarry Smith } 14923a40ed3dSBarry Smith PetscFunctionReturn(0); 14932593348eSBarry Smith } 14942593348eSBarry Smith 14954a2ae208SSatish Balay #undef __FUNCT__ 14964a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqBAIJ_ASCII" 14976849ba73SBarry Smith static PetscErrorCode MatView_SeqBAIJ_ASCII(Mat A,PetscViewer viewer) 14982593348eSBarry Smith { 1499b6490206SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 1500dfbe8321SBarry Smith PetscErrorCode ierr; 1501899cda47SBarry Smith PetscInt i,j,bs = A->rmap.bs,k,l,bs2=a->bs2; 1502f3ef73ceSBarry Smith PetscViewerFormat format; 15032593348eSBarry Smith 15043a40ed3dSBarry Smith PetscFunctionBegin; 1505b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 1506456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 150777431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 1508fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_MATLAB) { 1509bcd9e38bSBarry Smith Mat aij; 1510ceb03754SKris Buschelman ierr = MatConvert(A,MATSEQAIJ,MAT_INITIAL_MATRIX,&aij);CHKERRQ(ierr); 1511bcd9e38bSBarry Smith ierr = MatView(aij,viewer);CHKERRQ(ierr); 1512bcd9e38bSBarry Smith ierr = MatDestroy(aij);CHKERRQ(ierr); 151304929863SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 151404929863SHong Zhang PetscFunctionReturn(0); 1515fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_COMMON) { 1516b0a32e0cSBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_NO);CHKERRQ(ierr); 151744cd7ae7SLois Curfman McInnes for (i=0; i<a->mbs; i++) { 151844cd7ae7SLois Curfman McInnes for (j=0; j<bs; j++) { 151977431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i*bs+j);CHKERRQ(ierr); 152044cd7ae7SLois Curfman McInnes for (k=a->i[i]; k<a->i[i+1]; k++) { 152144cd7ae7SLois Curfman McInnes for (l=0; l<bs; l++) { 1522aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 15230e6d2581SBarry Smith if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) > 0.0 && PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) { 1524a83599f4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %G + %Gi) ",bs*a->j[k]+l, 15250e6d2581SBarry Smith PetscRealPart(a->a[bs2*k + l*bs + j]),PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 15260e6d2581SBarry Smith } else if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) < 0.0 && PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) { 1527a83599f4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %G - %Gi) ",bs*a->j[k]+l, 15280e6d2581SBarry Smith PetscRealPart(a->a[bs2*k + l*bs + j]),-PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 15290e6d2581SBarry Smith } else if (PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) { 1530a83599f4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %G) ",bs*a->j[k]+l,PetscRealPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 15310ef38995SBarry Smith } 153244cd7ae7SLois Curfman McInnes #else 15330ef38995SBarry Smith if (a->a[bs2*k + l*bs + j] != 0.0) { 1534a83599f4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %G) ",bs*a->j[k]+l,a->a[bs2*k + l*bs + j]);CHKERRQ(ierr); 15350ef38995SBarry Smith } 153644cd7ae7SLois Curfman McInnes #endif 153744cd7ae7SLois Curfman McInnes } 153844cd7ae7SLois Curfman McInnes } 1539b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 154044cd7ae7SLois Curfman McInnes } 154144cd7ae7SLois Curfman McInnes } 1542b0a32e0cSBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_YES);CHKERRQ(ierr); 15430ef38995SBarry Smith } else { 1544b0a32e0cSBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_NO);CHKERRQ(ierr); 1545b6490206SBarry Smith for (i=0; i<a->mbs; i++) { 1546b6490206SBarry Smith for (j=0; j<bs; j++) { 154777431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i*bs+j);CHKERRQ(ierr); 1548b6490206SBarry Smith for (k=a->i[i]; k<a->i[i+1]; k++) { 1549b6490206SBarry Smith for (l=0; l<bs; l++) { 1550aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 15510e6d2581SBarry Smith if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) > 0.0) { 1552a83599f4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %G + %G i) ",bs*a->j[k]+l, 15530e6d2581SBarry Smith PetscRealPart(a->a[bs2*k + l*bs + j]),PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 15540e6d2581SBarry Smith } else if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) < 0.0) { 1555a83599f4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %G - %G i) ",bs*a->j[k]+l, 15560e6d2581SBarry Smith PetscRealPart(a->a[bs2*k + l*bs + j]),-PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 15570ef38995SBarry Smith } else { 1558a83599f4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %G) ",bs*a->j[k]+l,PetscRealPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 155988685aaeSLois Curfman McInnes } 156088685aaeSLois Curfman McInnes #else 1561a83599f4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %G) ",bs*a->j[k]+l,a->a[bs2*k + l*bs + j]);CHKERRQ(ierr); 156288685aaeSLois Curfman McInnes #endif 15632593348eSBarry Smith } 15642593348eSBarry Smith } 1565b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 15662593348eSBarry Smith } 15672593348eSBarry Smith } 1568b0a32e0cSBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_YES);CHKERRQ(ierr); 1569b6490206SBarry Smith } 1570b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 15713a40ed3dSBarry Smith PetscFunctionReturn(0); 15722593348eSBarry Smith } 15732593348eSBarry Smith 15744a2ae208SSatish Balay #undef __FUNCT__ 15754a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqBAIJ_Draw_Zoom" 15766849ba73SBarry Smith static PetscErrorCode MatView_SeqBAIJ_Draw_Zoom(PetscDraw draw,void *Aa) 15773270192aSSatish Balay { 157877ed5343SBarry Smith Mat A = (Mat) Aa; 15793270192aSSatish Balay Mat_SeqBAIJ *a=(Mat_SeqBAIJ*)A->data; 15806849ba73SBarry Smith PetscErrorCode ierr; 1581899cda47SBarry Smith PetscInt row,i,j,k,l,mbs=a->mbs,color,bs=A->rmap.bs,bs2=a->bs2; 15820e6d2581SBarry Smith PetscReal xl,yl,xr,yr,x_l,x_r,y_l,y_r; 15833f1db9ecSBarry Smith MatScalar *aa; 1584b0a32e0cSBarry Smith PetscViewer viewer; 15853270192aSSatish Balay 15863a40ed3dSBarry Smith PetscFunctionBegin; 15873270192aSSatish Balay 1588b65db4caSBarry Smith /* still need to add support for contour plot of nonzeros; see MatView_SeqAIJ_Draw_Zoom()*/ 158977ed5343SBarry Smith ierr = PetscObjectQuery((PetscObject)A,"Zoomviewer",(PetscObject*)&viewer);CHKERRQ(ierr); 159077ed5343SBarry Smith 1591b0a32e0cSBarry Smith ierr = PetscDrawGetCoordinates(draw,&xl,&yl,&xr,&yr);CHKERRQ(ierr); 159277ed5343SBarry Smith 15933270192aSSatish Balay /* loop over matrix elements drawing boxes */ 1594b0a32e0cSBarry Smith color = PETSC_DRAW_BLUE; 15953270192aSSatish Balay for (i=0,row=0; i<mbs; i++,row+=bs) { 15963270192aSSatish Balay for (j=a->i[i]; j<a->i[i+1]; j++) { 1597899cda47SBarry Smith y_l = A->rmap.N - row - 1.0; y_r = y_l + 1.0; 15983270192aSSatish Balay x_l = a->j[j]*bs; x_r = x_l + 1.0; 15993270192aSSatish Balay aa = a->a + j*bs2; 16003270192aSSatish Balay for (k=0; k<bs; k++) { 16013270192aSSatish Balay for (l=0; l<bs; l++) { 16020e6d2581SBarry Smith if (PetscRealPart(*aa++) >= 0.) continue; 1603b0a32e0cSBarry Smith ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr); 16043270192aSSatish Balay } 16053270192aSSatish Balay } 16063270192aSSatish Balay } 16073270192aSSatish Balay } 1608b0a32e0cSBarry Smith color = PETSC_DRAW_CYAN; 16093270192aSSatish Balay for (i=0,row=0; i<mbs; i++,row+=bs) { 16103270192aSSatish Balay for (j=a->i[i]; j<a->i[i+1]; j++) { 1611899cda47SBarry Smith y_l = A->rmap.N - row - 1.0; y_r = y_l + 1.0; 16123270192aSSatish Balay x_l = a->j[j]*bs; x_r = x_l + 1.0; 16133270192aSSatish Balay aa = a->a + j*bs2; 16143270192aSSatish Balay for (k=0; k<bs; k++) { 16153270192aSSatish Balay for (l=0; l<bs; l++) { 16160e6d2581SBarry Smith if (PetscRealPart(*aa++) != 0.) continue; 1617b0a32e0cSBarry Smith ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr); 16183270192aSSatish Balay } 16193270192aSSatish Balay } 16203270192aSSatish Balay } 16213270192aSSatish Balay } 16223270192aSSatish Balay 1623b0a32e0cSBarry Smith color = PETSC_DRAW_RED; 16243270192aSSatish Balay for (i=0,row=0; i<mbs; i++,row+=bs) { 16253270192aSSatish Balay for (j=a->i[i]; j<a->i[i+1]; j++) { 1626899cda47SBarry Smith y_l = A->rmap.N - row - 1.0; y_r = y_l + 1.0; 16273270192aSSatish Balay x_l = a->j[j]*bs; x_r = x_l + 1.0; 16283270192aSSatish Balay aa = a->a + j*bs2; 16293270192aSSatish Balay for (k=0; k<bs; k++) { 16303270192aSSatish Balay for (l=0; l<bs; l++) { 16310e6d2581SBarry Smith if (PetscRealPart(*aa++) <= 0.) continue; 1632b0a32e0cSBarry Smith ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr); 16333270192aSSatish Balay } 16343270192aSSatish Balay } 16353270192aSSatish Balay } 16363270192aSSatish Balay } 163777ed5343SBarry Smith PetscFunctionReturn(0); 163877ed5343SBarry Smith } 16393270192aSSatish Balay 16404a2ae208SSatish Balay #undef __FUNCT__ 16414a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqBAIJ_Draw" 16426849ba73SBarry Smith static PetscErrorCode MatView_SeqBAIJ_Draw(Mat A,PetscViewer viewer) 164377ed5343SBarry Smith { 1644dfbe8321SBarry Smith PetscErrorCode ierr; 16450e6d2581SBarry Smith PetscReal xl,yl,xr,yr,w,h; 1646b0a32e0cSBarry Smith PetscDraw draw; 164777ed5343SBarry Smith PetscTruth isnull; 16483270192aSSatish Balay 164977ed5343SBarry Smith PetscFunctionBegin; 165077ed5343SBarry Smith 1651b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 1652b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 165377ed5343SBarry Smith 165477ed5343SBarry Smith ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",(PetscObject)viewer);CHKERRQ(ierr); 1655899cda47SBarry Smith xr = A->cmap.n; yr = A->rmap.N; h = yr/10.0; w = xr/10.0; 165677ed5343SBarry Smith xr += w; yr += h; xl = -w; yl = -h; 1657b0a32e0cSBarry Smith ierr = PetscDrawSetCoordinates(draw,xl,yl,xr,yr);CHKERRQ(ierr); 1658b0a32e0cSBarry Smith ierr = PetscDrawZoom(draw,MatView_SeqBAIJ_Draw_Zoom,A);CHKERRQ(ierr); 165977ed5343SBarry Smith ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",PETSC_NULL);CHKERRQ(ierr); 16603a40ed3dSBarry Smith PetscFunctionReturn(0); 16613270192aSSatish Balay } 16623270192aSSatish Balay 16634a2ae208SSatish Balay #undef __FUNCT__ 16644a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqBAIJ" 1665dfbe8321SBarry Smith PetscErrorCode MatView_SeqBAIJ(Mat A,PetscViewer viewer) 16662593348eSBarry Smith { 1667dfbe8321SBarry Smith PetscErrorCode ierr; 166832077d6dSBarry Smith PetscTruth iascii,isbinary,isdraw; 16692593348eSBarry Smith 16703a40ed3dSBarry Smith PetscFunctionBegin; 167132077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 1672fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 1673fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 167432077d6dSBarry Smith if (iascii){ 16753a40ed3dSBarry Smith ierr = MatView_SeqBAIJ_ASCII(A,viewer);CHKERRQ(ierr); 16760f5bd95cSBarry Smith } else if (isbinary) { 16773a40ed3dSBarry Smith ierr = MatView_SeqBAIJ_Binary(A,viewer);CHKERRQ(ierr); 16780f5bd95cSBarry Smith } else if (isdraw) { 16793a40ed3dSBarry Smith ierr = MatView_SeqBAIJ_Draw(A,viewer);CHKERRQ(ierr); 16805cd90555SBarry Smith } else { 1681a5e6ed63SBarry Smith Mat B; 1682ceb03754SKris Buschelman ierr = MatConvert(A,MATSEQAIJ,MAT_INITIAL_MATRIX,&B);CHKERRQ(ierr); 1683a5e6ed63SBarry Smith ierr = MatView(B,viewer);CHKERRQ(ierr); 1684a5e6ed63SBarry Smith ierr = MatDestroy(B);CHKERRQ(ierr); 16852593348eSBarry Smith } 16863a40ed3dSBarry Smith PetscFunctionReturn(0); 16872593348eSBarry Smith } 1688b6490206SBarry Smith 1689cd0e1443SSatish Balay 16904a2ae208SSatish Balay #undef __FUNCT__ 16914a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_SeqBAIJ" 1692c1ac3661SBarry Smith PetscErrorCode MatGetValues_SeqBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],PetscScalar v[]) 1693cd0e1443SSatish Balay { 1694cd0e1443SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 1695c1ac3661SBarry Smith PetscInt *rp,k,low,high,t,row,nrow,i,col,l,*aj = a->j; 1696c1ac3661SBarry Smith PetscInt *ai = a->i,*ailen = a->ilen; 1697899cda47SBarry Smith PetscInt brow,bcol,ridx,cidx,bs=A->rmap.bs,bs2=a->bs2; 169897e567efSBarry Smith MatScalar *ap,*aa = a->a; 1699cd0e1443SSatish Balay 17003a40ed3dSBarry Smith PetscFunctionBegin; 17012d61bbb3SSatish Balay for (k=0; k<m; k++) { /* loop over rows */ 1702cd0e1443SSatish Balay row = im[k]; brow = row/bs; 170397e567efSBarry Smith if (row < 0) {v += n; continue;} /* SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); */ 1704899cda47SBarry Smith if (row >= A->rmap.N) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Row %D too large", row); 17052d61bbb3SSatish Balay rp = aj + ai[brow] ; ap = aa + bs2*ai[brow] ; 17062c3acbe9SBarry Smith nrow = ailen[brow]; 17072d61bbb3SSatish Balay for (l=0; l<n; l++) { /* loop over columns */ 170897e567efSBarry Smith if (in[l] < 0) {v++; continue;} /* SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); */ 1709899cda47SBarry Smith if (in[l] >= A->cmap.n) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Column %D too large", in[l]); 17102d61bbb3SSatish Balay col = in[l] ; 17112d61bbb3SSatish Balay bcol = col/bs; 17122d61bbb3SSatish Balay cidx = col%bs; 17132d61bbb3SSatish Balay ridx = row%bs; 17142d61bbb3SSatish Balay high = nrow; 17152d61bbb3SSatish Balay low = 0; /* assume unsorted */ 17162d61bbb3SSatish Balay while (high-low > 5) { 1717cd0e1443SSatish Balay t = (low+high)/2; 1718cd0e1443SSatish Balay if (rp[t] > bcol) high = t; 1719cd0e1443SSatish Balay else low = t; 1720cd0e1443SSatish Balay } 1721cd0e1443SSatish Balay for (i=low; i<high; i++) { 1722cd0e1443SSatish Balay if (rp[i] > bcol) break; 1723cd0e1443SSatish Balay if (rp[i] == bcol) { 17242d61bbb3SSatish Balay *v++ = ap[bs2*i+bs*cidx+ridx]; 17252d61bbb3SSatish Balay goto finished; 1726cd0e1443SSatish Balay } 1727cd0e1443SSatish Balay } 172897e567efSBarry Smith *v++ = 0.0; 17292d61bbb3SSatish Balay finished:; 1730cd0e1443SSatish Balay } 1731cd0e1443SSatish Balay } 17323a40ed3dSBarry Smith PetscFunctionReturn(0); 1733cd0e1443SSatish Balay } 1734cd0e1443SSatish Balay 173597e5c40aSBarry Smith #define CHUNKSIZE 10 17364a2ae208SSatish Balay #undef __FUNCT__ 17374a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_SeqBAIJ" 1738*dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is) 173992c4ed94SBarry Smith { 174092c4ed94SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 1741e2ee6c50SBarry Smith PetscInt *rp,k,low,high,t,ii,jj,row,nrow,i,col,l,rmax,N,lastcol = -1; 1742c1ac3661SBarry Smith PetscInt *imax=a->imax,*ai=a->i,*ailen=a->ilen; 17436849ba73SBarry Smith PetscErrorCode ierr; 1744899cda47SBarry Smith PetscInt *aj=a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap.bs,stepval; 1745273d9f13SBarry Smith PetscTruth roworiented=a->roworiented; 1746*dd6ea824SBarry Smith const PetscScalar *value = v; 1747f15d580aSBarry Smith MatScalar *ap,*aa = a->a,*bap; 174892c4ed94SBarry Smith 17493a40ed3dSBarry Smith PetscFunctionBegin; 17500e324ae4SSatish Balay if (roworiented) { 17510e324ae4SSatish Balay stepval = (n-1)*bs; 17520e324ae4SSatish Balay } else { 17530e324ae4SSatish Balay stepval = (m-1)*bs; 17540e324ae4SSatish Balay } 175592c4ed94SBarry Smith for (k=0; k<m; k++) { /* loop over added rows */ 175692c4ed94SBarry Smith row = im[k]; 17575ef9f2a5SBarry Smith if (row < 0) continue; 17582515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 175977431f27SBarry Smith if (row >= a->mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,a->mbs-1); 176092c4ed94SBarry Smith #endif 176192c4ed94SBarry Smith rp = aj + ai[row]; 176292c4ed94SBarry Smith ap = aa + bs2*ai[row]; 176392c4ed94SBarry Smith rmax = imax[row]; 176492c4ed94SBarry Smith nrow = ailen[row]; 176592c4ed94SBarry Smith low = 0; 1766c71e6ed7SBarry Smith high = nrow; 176792c4ed94SBarry Smith for (l=0; l<n; l++) { /* loop over added columns */ 17685ef9f2a5SBarry Smith if (in[l] < 0) continue; 17692515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 177077431f27SBarry Smith if (in[l] >= a->nbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[l],a->nbs-1); 177192c4ed94SBarry Smith #endif 177292c4ed94SBarry Smith col = in[l]; 177392c4ed94SBarry Smith if (roworiented) { 17740e324ae4SSatish Balay value = v + k*(stepval+bs)*bs + l*bs; 17750e324ae4SSatish Balay } else { 17760e324ae4SSatish Balay value = v + l*(stepval+bs)*bs + k*bs; 177792c4ed94SBarry Smith } 17787cd84e04SBarry Smith if (col <= lastcol) low = 0; else high = nrow; 1779e2ee6c50SBarry Smith lastcol = col; 178092c4ed94SBarry Smith while (high-low > 7) { 178192c4ed94SBarry Smith t = (low+high)/2; 178292c4ed94SBarry Smith if (rp[t] > col) high = t; 178392c4ed94SBarry Smith else low = t; 178492c4ed94SBarry Smith } 178592c4ed94SBarry Smith for (i=low; i<high; i++) { 178692c4ed94SBarry Smith if (rp[i] > col) break; 178792c4ed94SBarry Smith if (rp[i] == col) { 17888a84c255SSatish Balay bap = ap + bs2*i; 17890e324ae4SSatish Balay if (roworiented) { 17908a84c255SSatish Balay if (is == ADD_VALUES) { 1791dd9472c6SBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 1792dd9472c6SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 17938a84c255SSatish Balay bap[jj] += *value++; 1794dd9472c6SBarry Smith } 1795dd9472c6SBarry Smith } 17960e324ae4SSatish Balay } else { 1797dd9472c6SBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 1798dd9472c6SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 17990e324ae4SSatish Balay bap[jj] = *value++; 18008a84c255SSatish Balay } 1801dd9472c6SBarry Smith } 1802dd9472c6SBarry Smith } 18030e324ae4SSatish Balay } else { 18040e324ae4SSatish Balay if (is == ADD_VALUES) { 1805dd9472c6SBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 1806dd9472c6SBarry Smith for (jj=0; jj<bs; jj++) { 18070e324ae4SSatish Balay *bap++ += *value++; 1808dd9472c6SBarry Smith } 1809dd9472c6SBarry Smith } 18100e324ae4SSatish Balay } else { 1811dd9472c6SBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 1812dd9472c6SBarry Smith for (jj=0; jj<bs; jj++) { 18130e324ae4SSatish Balay *bap++ = *value++; 18140e324ae4SSatish Balay } 18158a84c255SSatish Balay } 1816dd9472c6SBarry Smith } 1817dd9472c6SBarry Smith } 1818f1241b54SBarry Smith goto noinsert2; 181992c4ed94SBarry Smith } 182092c4ed94SBarry Smith } 182189280ab3SLois Curfman McInnes if (nonew == 1) goto noinsert2; 1822085a36d4SBarry Smith if (nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col); 1823421e10b8SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 1824c03d1d03SSatish Balay N = nrow++ - 1; high++; 182592c4ed94SBarry Smith /* shift up all the later entries in this row */ 182692c4ed94SBarry Smith for (ii=N; ii>=i; ii--) { 182792c4ed94SBarry Smith rp[ii+1] = rp[ii]; 1828549d3d68SSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); 182992c4ed94SBarry Smith } 1830549d3d68SSatish Balay if (N >= i) { 1831549d3d68SSatish Balay ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr); 1832549d3d68SSatish Balay } 183392c4ed94SBarry Smith rp[i] = col; 18348a84c255SSatish Balay bap = ap + bs2*i; 18350e324ae4SSatish Balay if (roworiented) { 1836dd9472c6SBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 1837dd9472c6SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 18380e324ae4SSatish Balay bap[jj] = *value++; 1839dd9472c6SBarry Smith } 1840dd9472c6SBarry Smith } 18410e324ae4SSatish Balay } else { 1842dd9472c6SBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 1843dd9472c6SBarry Smith for (jj=0; jj<bs; jj++) { 18440e324ae4SSatish Balay *bap++ = *value++; 18450e324ae4SSatish Balay } 1846dd9472c6SBarry Smith } 1847dd9472c6SBarry Smith } 1848f1241b54SBarry Smith noinsert2:; 184992c4ed94SBarry Smith low = i; 185092c4ed94SBarry Smith } 185192c4ed94SBarry Smith ailen[row] = nrow; 185292c4ed94SBarry Smith } 18533a40ed3dSBarry Smith PetscFunctionReturn(0); 185492c4ed94SBarry Smith } 185526e093fcSHong Zhang 18564a2ae208SSatish Balay #undef __FUNCT__ 18574a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_SeqBAIJ" 1858dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_SeqBAIJ(Mat A,MatAssemblyType mode) 1859584200bdSSatish Balay { 1860584200bdSSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 1861c1ac3661SBarry Smith PetscInt fshift = 0,i,j,*ai = a->i,*aj = a->j,*imax = a->imax; 1862899cda47SBarry Smith PetscInt m = A->rmap.N,*ip,N,*ailen = a->ilen; 18636849ba73SBarry Smith PetscErrorCode ierr; 1864c1ac3661SBarry Smith PetscInt mbs = a->mbs,bs2 = a->bs2,rmax = 0; 18653f1db9ecSBarry Smith MatScalar *aa = a->a,*ap; 18663447b6efSHong Zhang PetscReal ratio=0.6; 1867584200bdSSatish Balay 18683a40ed3dSBarry Smith PetscFunctionBegin; 18693a40ed3dSBarry Smith if (mode == MAT_FLUSH_ASSEMBLY) PetscFunctionReturn(0); 1870584200bdSSatish Balay 187143ee02c3SBarry Smith if (m) rmax = ailen[0]; 1872584200bdSSatish Balay for (i=1; i<mbs; i++) { 1873584200bdSSatish Balay /* move each row back by the amount of empty slots (fshift) before it*/ 1874584200bdSSatish Balay fshift += imax[i-1] - ailen[i-1]; 1875d402145bSBarry Smith rmax = PetscMax(rmax,ailen[i]); 1876584200bdSSatish Balay if (fshift) { 1877a7c10996SSatish Balay ip = aj + ai[i]; ap = aa + bs2*ai[i]; 1878584200bdSSatish Balay N = ailen[i]; 1879584200bdSSatish Balay for (j=0; j<N; j++) { 1880584200bdSSatish Balay ip[j-fshift] = ip[j]; 1881549d3d68SSatish Balay ierr = PetscMemcpy(ap+(j-fshift)*bs2,ap+j*bs2,bs2*sizeof(MatScalar));CHKERRQ(ierr); 1882584200bdSSatish Balay } 1883584200bdSSatish Balay } 1884584200bdSSatish Balay ai[i] = ai[i-1] + ailen[i-1]; 1885584200bdSSatish Balay } 1886584200bdSSatish Balay if (mbs) { 1887584200bdSSatish Balay fshift += imax[mbs-1] - ailen[mbs-1]; 1888584200bdSSatish Balay ai[mbs] = ai[mbs-1] + ailen[mbs-1]; 1889584200bdSSatish Balay } 1890584200bdSSatish Balay /* reset ilen and imax for each row */ 1891584200bdSSatish Balay for (i=0; i<mbs; i++) { 1892584200bdSSatish Balay ailen[i] = imax[i] = ai[i+1] - ai[i]; 1893584200bdSSatish Balay } 1894a7c10996SSatish Balay a->nz = ai[mbs]; 1895584200bdSSatish Balay 1896584200bdSSatish Balay /* diagonals may have moved, so kill the diagonal pointers */ 1897b01c7715SBarry Smith a->idiagvalid = PETSC_FALSE; 1898584200bdSSatish Balay if (fshift && a->diag) { 1899606d414cSSatish Balay ierr = PetscFree(a->diag);CHKERRQ(ierr); 190052e6d16bSBarry Smith ierr = PetscLogObjectMemory(A,-(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr); 1901584200bdSSatish Balay a->diag = 0; 1902584200bdSSatish Balay } 1903899cda47SBarry Smith ierr = PetscInfo5(A,"Matrix size: %D X %D, block size %D; storage space: %D unneeded, %D used\n",m,A->cmap.n,A->rmap.bs,fshift*bs2,a->nz*bs2);CHKERRQ(ierr); 1904ae15b995SBarry Smith ierr = PetscInfo1(A,"Number of mallocs during MatSetValues is %D\n",a->reallocs);CHKERRQ(ierr); 1905ae15b995SBarry Smith ierr = PetscInfo1(A,"Most nonzeros blocks in any row is %D\n",rmax);CHKERRQ(ierr); 1906e2f3b5e9SSatish Balay a->reallocs = 0; 19070e6d2581SBarry Smith A->info.nz_unneeded = (PetscReal)fshift*bs2; 1908cf4441caSHong Zhang 1909cb5d8e9eSHong Zhang /* check for zero rows. If found a large number of zero rows, use CompressedRow functions */ 19102f53aa61SHong Zhang if (a->compressedrow.use){ 1911317fbc4cSHong Zhang ierr = Mat_CheckCompressedRow(A,&a->compressedrow,a->i,mbs,ratio);CHKERRQ(ierr); 191273e7a558SHong Zhang } 191388e51ccdSHong Zhang 191488e51ccdSHong Zhang A->same_nonzero = PETSC_TRUE; 19153a40ed3dSBarry Smith PetscFunctionReturn(0); 1916584200bdSSatish Balay } 1917584200bdSSatish Balay 1918bea157c4SSatish Balay /* 1919bea157c4SSatish Balay This function returns an array of flags which indicate the locations of contiguous 1920bea157c4SSatish Balay blocks that should be zeroed. for eg: if bs = 3 and is = [0,1,2,3,5,6,7,8,9] 1921bea157c4SSatish Balay then the resulting sizes = [3,1,1,3,1] correspondig to sets [(0,1,2),(3),(5),(6,7,8),(9)] 1922bea157c4SSatish Balay Assume: sizes should be long enough to hold all the values. 1923bea157c4SSatish Balay */ 19244a2ae208SSatish Balay #undef __FUNCT__ 19254a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_SeqBAIJ_Check_Blocks" 1926c1ac3661SBarry Smith static PetscErrorCode MatZeroRows_SeqBAIJ_Check_Blocks(PetscInt idx[],PetscInt n,PetscInt bs,PetscInt sizes[], PetscInt *bs_max) 1927d9b7c43dSSatish Balay { 1928c1ac3661SBarry Smith PetscInt i,j,k,row; 1929bea157c4SSatish Balay PetscTruth flg; 19303a40ed3dSBarry Smith 1931433994e6SBarry Smith PetscFunctionBegin; 1932bea157c4SSatish Balay for (i=0,j=0; i<n; j++) { 1933bea157c4SSatish Balay row = idx[i]; 1934bea157c4SSatish Balay if (row%bs!=0) { /* Not the begining of a block */ 1935bea157c4SSatish Balay sizes[j] = 1; 1936bea157c4SSatish Balay i++; 1937e4fda26cSSatish Balay } else if (i+bs > n) { /* complete block doesn't exist (at idx end) */ 1938bea157c4SSatish Balay sizes[j] = 1; /* Also makes sure atleast 'bs' values exist for next else */ 1939bea157c4SSatish Balay i++; 1940bea157c4SSatish Balay } else { /* Begining of the block, so check if the complete block exists */ 1941bea157c4SSatish Balay flg = PETSC_TRUE; 1942bea157c4SSatish Balay for (k=1; k<bs; k++) { 1943bea157c4SSatish Balay if (row+k != idx[i+k]) { /* break in the block */ 1944bea157c4SSatish Balay flg = PETSC_FALSE; 1945bea157c4SSatish Balay break; 1946d9b7c43dSSatish Balay } 1947bea157c4SSatish Balay } 1948abc0a331SBarry Smith if (flg) { /* No break in the bs */ 1949bea157c4SSatish Balay sizes[j] = bs; 1950bea157c4SSatish Balay i+= bs; 1951bea157c4SSatish Balay } else { 1952bea157c4SSatish Balay sizes[j] = 1; 1953bea157c4SSatish Balay i++; 1954bea157c4SSatish Balay } 1955bea157c4SSatish Balay } 1956bea157c4SSatish Balay } 1957bea157c4SSatish Balay *bs_max = j; 19583a40ed3dSBarry Smith PetscFunctionReturn(0); 1959d9b7c43dSSatish Balay } 1960d9b7c43dSSatish Balay 19614a2ae208SSatish Balay #undef __FUNCT__ 19624a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_SeqBAIJ" 1963f4df32b1SMatthew Knepley PetscErrorCode MatZeroRows_SeqBAIJ(Mat A,PetscInt is_n,const PetscInt is_idx[],PetscScalar diag) 1964d9b7c43dSSatish Balay { 1965d9b7c43dSSatish Balay Mat_SeqBAIJ *baij=(Mat_SeqBAIJ*)A->data; 1966dfbe8321SBarry Smith PetscErrorCode ierr; 1967f4df32b1SMatthew Knepley PetscInt i,j,k,count,*rows; 1968899cda47SBarry Smith PetscInt bs=A->rmap.bs,bs2=baij->bs2,*sizes,row,bs_max; 196987828ca2SBarry Smith PetscScalar zero = 0.0; 19703f1db9ecSBarry Smith MatScalar *aa; 1971d9b7c43dSSatish Balay 19723a40ed3dSBarry Smith PetscFunctionBegin; 1973d9b7c43dSSatish Balay /* Make a copy of the IS and sort it */ 1974bea157c4SSatish Balay /* allocate memory for rows,sizes */ 1975c1ac3661SBarry Smith ierr = PetscMalloc((3*is_n+1)*sizeof(PetscInt),&rows);CHKERRQ(ierr); 1976bea157c4SSatish Balay sizes = rows + is_n; 1977bea157c4SSatish Balay 1978563b5814SBarry Smith /* copy IS values to rows, and sort them */ 1979bea157c4SSatish Balay for (i=0; i<is_n; i++) { rows[i] = is_idx[i]; } 1980bea157c4SSatish Balay ierr = PetscSortInt(is_n,rows);CHKERRQ(ierr); 1981dffd3267SBarry Smith if (baij->keepzeroedrows) { 1982dffd3267SBarry Smith for (i=0; i<is_n; i++) { sizes[i] = 1; } 1983dffd3267SBarry Smith bs_max = is_n; 198488e51ccdSHong Zhang A->same_nonzero = PETSC_TRUE; 1985dffd3267SBarry Smith } else { 1986bea157c4SSatish Balay ierr = MatZeroRows_SeqBAIJ_Check_Blocks(rows,is_n,bs,sizes,&bs_max);CHKERRQ(ierr); 198788e51ccdSHong Zhang A->same_nonzero = PETSC_FALSE; 1988dffd3267SBarry Smith } 1989bea157c4SSatish Balay 1990bea157c4SSatish Balay for (i=0,j=0; i<bs_max; j+=sizes[i],i++) { 1991bea157c4SSatish Balay row = rows[j]; 1992899cda47SBarry Smith if (row < 0 || row > A->rmap.N) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"row %D out of range",row); 1993bea157c4SSatish Balay count = (baij->i[row/bs +1] - baij->i[row/bs])*bs; 1994b31fbe3bSSatish Balay aa = ((MatScalar*)(baij->a)) + baij->i[row/bs]*bs2 + (row%bs); 1995dffd3267SBarry Smith if (sizes[i] == bs && !baij->keepzeroedrows) { 1996f4df32b1SMatthew Knepley if (diag != 0.0) { 1997bea157c4SSatish Balay if (baij->ilen[row/bs] > 0) { 1998bea157c4SSatish Balay baij->ilen[row/bs] = 1; 1999bea157c4SSatish Balay baij->j[baij->i[row/bs]] = row/bs; 2000bea157c4SSatish Balay ierr = PetscMemzero(aa,count*bs*sizeof(MatScalar));CHKERRQ(ierr); 2001a07cd24cSSatish Balay } 2002563b5814SBarry Smith /* Now insert all the diagonal values for this bs */ 2003bea157c4SSatish Balay for (k=0; k<bs; k++) { 2004f4df32b1SMatthew Knepley ierr = (*A->ops->setvalues)(A,1,rows+j+k,1,rows+j+k,&diag,INSERT_VALUES);CHKERRQ(ierr); 2005bea157c4SSatish Balay } 2006f4df32b1SMatthew Knepley } else { /* (diag == 0.0) */ 2007bea157c4SSatish Balay baij->ilen[row/bs] = 0; 2008f4df32b1SMatthew Knepley } /* end (diag == 0.0) */ 2009bea157c4SSatish Balay } else { /* (sizes[i] != bs) */ 2010aa482453SBarry Smith #if defined (PETSC_USE_DEBUG) 2011634064b4SBarry Smith if (sizes[i] != 1) SETERRQ(PETSC_ERR_PLIB,"Internal Error. Value should be 1"); 2012bea157c4SSatish Balay #endif 2013bea157c4SSatish Balay for (k=0; k<count; k++) { 2014d9b7c43dSSatish Balay aa[0] = zero; 2015d9b7c43dSSatish Balay aa += bs; 2016d9b7c43dSSatish Balay } 2017f4df32b1SMatthew Knepley if (diag != 0.0) { 2018f4df32b1SMatthew Knepley ierr = (*A->ops->setvalues)(A,1,rows+j,1,rows+j,&diag,INSERT_VALUES);CHKERRQ(ierr); 2019d9b7c43dSSatish Balay } 2020d9b7c43dSSatish Balay } 2021bea157c4SSatish Balay } 2022bea157c4SSatish Balay 2023606d414cSSatish Balay ierr = PetscFree(rows);CHKERRQ(ierr); 20249a8dea36SBarry Smith ierr = MatAssemblyEnd_SeqBAIJ(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 20253a40ed3dSBarry Smith PetscFunctionReturn(0); 2026d9b7c43dSSatish Balay } 20271c351548SSatish Balay 20284a2ae208SSatish Balay #undef __FUNCT__ 20294a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_SeqBAIJ" 2030c1ac3661SBarry Smith PetscErrorCode MatSetValues_SeqBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is) 20312d61bbb3SSatish Balay { 20322d61bbb3SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 2033e2ee6c50SBarry Smith PetscInt *rp,k,low,high,t,ii,row,nrow,i,col,l,rmax,N,lastcol = -1; 2034c1ac3661SBarry Smith PetscInt *imax=a->imax,*ai=a->i,*ailen=a->ilen; 2035899cda47SBarry Smith PetscInt *aj=a->j,nonew=a->nonew,bs=A->rmap.bs,brow,bcol; 20366849ba73SBarry Smith PetscErrorCode ierr; 2037c1ac3661SBarry Smith PetscInt ridx,cidx,bs2=a->bs2; 2038273d9f13SBarry Smith PetscTruth roworiented=a->roworiented; 20393f1db9ecSBarry Smith MatScalar *ap,value,*aa=a->a,*bap; 20402d61bbb3SSatish Balay 20412d61bbb3SSatish Balay PetscFunctionBegin; 20422d61bbb3SSatish Balay for (k=0; k<m; k++) { /* loop over added rows */ 2043085a36d4SBarry Smith row = im[k]; 2044085a36d4SBarry Smith brow = row/bs; 20455ef9f2a5SBarry Smith if (row < 0) continue; 20462515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 2047899cda47SBarry Smith if (row >= A->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,A->rmap.N-1); 20482d61bbb3SSatish Balay #endif 20492d61bbb3SSatish Balay rp = aj + ai[brow]; 20502d61bbb3SSatish Balay ap = aa + bs2*ai[brow]; 20512d61bbb3SSatish Balay rmax = imax[brow]; 20522d61bbb3SSatish Balay nrow = ailen[brow]; 20532d61bbb3SSatish Balay low = 0; 2054c71e6ed7SBarry Smith high = nrow; 20552d61bbb3SSatish Balay for (l=0; l<n; l++) { /* loop over added columns */ 20565ef9f2a5SBarry Smith if (in[l] < 0) continue; 20572515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 2058899cda47SBarry Smith if (in[l] >= A->cmap.n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[l],A->cmap.n-1); 20592d61bbb3SSatish Balay #endif 20602d61bbb3SSatish Balay col = in[l]; bcol = col/bs; 20612d61bbb3SSatish Balay ridx = row % bs; cidx = col % bs; 20622d61bbb3SSatish Balay if (roworiented) { 20635ef9f2a5SBarry Smith value = v[l + k*n]; 20642d61bbb3SSatish Balay } else { 20652d61bbb3SSatish Balay value = v[k + l*m]; 20662d61bbb3SSatish Balay } 20677cd84e04SBarry Smith if (col <= lastcol) low = 0; else high = nrow; 2068e2ee6c50SBarry Smith lastcol = col; 20692d61bbb3SSatish Balay while (high-low > 7) { 20702d61bbb3SSatish Balay t = (low+high)/2; 20712d61bbb3SSatish Balay if (rp[t] > bcol) high = t; 20722d61bbb3SSatish Balay else low = t; 20732d61bbb3SSatish Balay } 20742d61bbb3SSatish Balay for (i=low; i<high; i++) { 20752d61bbb3SSatish Balay if (rp[i] > bcol) break; 20762d61bbb3SSatish Balay if (rp[i] == bcol) { 20772d61bbb3SSatish Balay bap = ap + bs2*i + bs*cidx + ridx; 20782d61bbb3SSatish Balay if (is == ADD_VALUES) *bap += value; 20792d61bbb3SSatish Balay else *bap = value; 20802d61bbb3SSatish Balay goto noinsert1; 20812d61bbb3SSatish Balay } 20822d61bbb3SSatish Balay } 20832d61bbb3SSatish Balay if (nonew == 1) goto noinsert1; 2084085a36d4SBarry Smith if (nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col); 2085421e10b8SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 2086c03d1d03SSatish Balay N = nrow++ - 1; high++; 20872d61bbb3SSatish Balay /* shift up all the later entries in this row */ 20882d61bbb3SSatish Balay for (ii=N; ii>=i; ii--) { 20892d61bbb3SSatish Balay rp[ii+1] = rp[ii]; 2090549d3d68SSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); 20912d61bbb3SSatish Balay } 2092549d3d68SSatish Balay if (N>=i) { 2093549d3d68SSatish Balay ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr); 2094549d3d68SSatish Balay } 20952d61bbb3SSatish Balay rp[i] = bcol; 20962d61bbb3SSatish Balay ap[bs2*i + bs*cidx + ridx] = value; 2097085a36d4SBarry Smith a->nz++; 20982d61bbb3SSatish Balay noinsert1:; 20992d61bbb3SSatish Balay low = i; 21002d61bbb3SSatish Balay } 21012d61bbb3SSatish Balay ailen[brow] = nrow; 21022d61bbb3SSatish Balay } 210388e51ccdSHong Zhang A->same_nonzero = PETSC_FALSE; 21042d61bbb3SSatish Balay PetscFunctionReturn(0); 21052d61bbb3SSatish Balay } 21062d61bbb3SSatish Balay 21072d61bbb3SSatish Balay 21084a2ae208SSatish Balay #undef __FUNCT__ 21094a2ae208SSatish Balay #define __FUNCT__ "MatILUFactor_SeqBAIJ" 2110dfbe8321SBarry Smith PetscErrorCode MatILUFactor_SeqBAIJ(Mat inA,IS row,IS col,MatFactorInfo *info) 21112d61bbb3SSatish Balay { 21122d61bbb3SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)inA->data; 21132d61bbb3SSatish Balay Mat outA; 2114dfbe8321SBarry Smith PetscErrorCode ierr; 2115667159a5SBarry Smith PetscTruth row_identity,col_identity; 21162d61bbb3SSatish Balay 21172d61bbb3SSatish Balay PetscFunctionBegin; 2118d3d32019SBarry Smith if (info->levels != 0) SETERRQ(PETSC_ERR_SUP,"Only levels = 0 supported for in-place ILU"); 2119667159a5SBarry Smith ierr = ISIdentity(row,&row_identity);CHKERRQ(ierr); 2120667159a5SBarry Smith ierr = ISIdentity(col,&col_identity);CHKERRQ(ierr); 2121667159a5SBarry Smith if (!row_identity || !col_identity) { 2122634064b4SBarry Smith SETERRQ(PETSC_ERR_ARG_WRONG,"Row and column permutations must be identity for in-place ILU"); 2123667159a5SBarry Smith } 21242d61bbb3SSatish Balay 21252d61bbb3SSatish Balay outA = inA; 21262d61bbb3SSatish Balay inA->factor = FACTOR_LU; 21272d61bbb3SSatish Balay 2128c4992f7dSBarry Smith ierr = MatMarkDiagonal_SeqBAIJ(inA);CHKERRQ(ierr); 2129cf242676SKris Buschelman 2130c38d4ed2SBarry Smith ierr = PetscObjectReference((PetscObject)row);CHKERRQ(ierr); 2131c3122656SLisandro Dalcin if (a->row) { ierr = ISDestroy(a->row);CHKERRQ(ierr); } 2132c3122656SLisandro Dalcin a->row = row; 2133c38d4ed2SBarry Smith ierr = PetscObjectReference((PetscObject)col);CHKERRQ(ierr); 2134c3122656SLisandro Dalcin if (a->col) { ierr = ISDestroy(a->col);CHKERRQ(ierr); } 2135c3122656SLisandro Dalcin a->col = col; 2136c38d4ed2SBarry Smith 2137c38d4ed2SBarry Smith /* Create the invert permutation so that it can be used in MatLUFactorNumeric() */ 21384c49b128SBarry Smith ierr = ISInvertPermutation(col,PETSC_DECIDE,&a->icol);CHKERRQ(ierr); 213952e6d16bSBarry Smith ierr = PetscLogObjectParent(inA,a->icol);CHKERRQ(ierr); 2140c38d4ed2SBarry Smith 2141cf242676SKris Buschelman /* 2142cf242676SKris Buschelman Blocksize 2, 3, 4, 5, 6 and 7 have a special faster factorization/solver 2143cf242676SKris Buschelman for ILU(0) factorization with natural ordering 2144cf242676SKris Buschelman */ 2145899cda47SBarry Smith if (inA->rmap.bs < 8) { 2146cf242676SKris Buschelman ierr = MatSeqBAIJ_UpdateFactorNumeric_NaturalOrdering(inA);CHKERRQ(ierr); 2147cf242676SKris Buschelman } else { 2148c38d4ed2SBarry Smith if (!a->solve_work) { 2149899cda47SBarry Smith ierr = PetscMalloc((inA->rmap.N+inA->rmap.bs)*sizeof(PetscScalar),&a->solve_work);CHKERRQ(ierr); 2150899cda47SBarry Smith ierr = PetscLogObjectMemory(inA,(inA->rmap.N+inA->rmap.bs)*sizeof(PetscScalar));CHKERRQ(ierr); 2151c38d4ed2SBarry Smith } 21522d61bbb3SSatish Balay } 21532d61bbb3SSatish Balay 2154af281ebdSHong Zhang ierr = MatLUFactorNumeric(inA,info,&outA);CHKERRQ(ierr); 2155667159a5SBarry Smith 21562d61bbb3SSatish Balay PetscFunctionReturn(0); 21572d61bbb3SSatish Balay } 2158d9b7c43dSSatish Balay 2159fb2e594dSBarry Smith EXTERN_C_BEGIN 21604a2ae208SSatish Balay #undef __FUNCT__ 21614a2ae208SSatish Balay #define __FUNCT__ "MatSeqBAIJSetColumnIndices_SeqBAIJ" 2162be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJSetColumnIndices_SeqBAIJ(Mat mat,PetscInt *indices) 216327a8da17SBarry Smith { 216427a8da17SBarry Smith Mat_SeqBAIJ *baij = (Mat_SeqBAIJ *)mat->data; 2165c1ac3661SBarry Smith PetscInt i,nz,nbs; 216627a8da17SBarry Smith 216727a8da17SBarry Smith PetscFunctionBegin; 216814db4f74SSatish Balay nz = baij->maxnz/baij->bs2; 216914db4f74SSatish Balay nbs = baij->nbs; 217027a8da17SBarry Smith for (i=0; i<nz; i++) { 217127a8da17SBarry Smith baij->j[i] = indices[i]; 217227a8da17SBarry Smith } 217327a8da17SBarry Smith baij->nz = nz; 217414db4f74SSatish Balay for (i=0; i<nbs; i++) { 217527a8da17SBarry Smith baij->ilen[i] = baij->imax[i]; 217627a8da17SBarry Smith } 217727a8da17SBarry Smith 217827a8da17SBarry Smith PetscFunctionReturn(0); 217927a8da17SBarry Smith } 2180fb2e594dSBarry Smith EXTERN_C_END 218127a8da17SBarry Smith 21824a2ae208SSatish Balay #undef __FUNCT__ 21834a2ae208SSatish Balay #define __FUNCT__ "MatSeqBAIJSetColumnIndices" 218427a8da17SBarry Smith /*@ 218527a8da17SBarry Smith MatSeqBAIJSetColumnIndices - Set the column indices for all the rows 218627a8da17SBarry Smith in the matrix. 218727a8da17SBarry Smith 218827a8da17SBarry Smith Input Parameters: 218927a8da17SBarry Smith + mat - the SeqBAIJ matrix 219027a8da17SBarry Smith - indices - the column indices 219127a8da17SBarry Smith 219215091d37SBarry Smith Level: advanced 219315091d37SBarry Smith 219427a8da17SBarry Smith Notes: 219527a8da17SBarry Smith This can be called if you have precomputed the nonzero structure of the 219627a8da17SBarry Smith matrix and want to provide it to the matrix object to improve the performance 219727a8da17SBarry Smith of the MatSetValues() operation. 219827a8da17SBarry Smith 219927a8da17SBarry Smith You MUST have set the correct numbers of nonzeros per row in the call to 2200d1be2dadSMatthew Knepley MatCreateSeqBAIJ(), and the columns indices MUST be sorted. 220127a8da17SBarry Smith 220227a8da17SBarry Smith MUST be called before any calls to MatSetValues(); 220327a8da17SBarry Smith 220427a8da17SBarry Smith @*/ 2205be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJSetColumnIndices(Mat mat,PetscInt *indices) 220627a8da17SBarry Smith { 2207c1ac3661SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt *); 220827a8da17SBarry Smith 220927a8da17SBarry Smith PetscFunctionBegin; 22104482741eSBarry Smith PetscValidHeaderSpecific(mat,MAT_COOKIE,1); 22114482741eSBarry Smith PetscValidPointer(indices,2); 2212c134de8dSSatish Balay ierr = PetscObjectQueryFunction((PetscObject)mat,"MatSeqBAIJSetColumnIndices_C",(void (**)(void))&f);CHKERRQ(ierr); 221327a8da17SBarry Smith if (f) { 221427a8da17SBarry Smith ierr = (*f)(mat,indices);CHKERRQ(ierr); 221527a8da17SBarry Smith } else { 2216634064b4SBarry Smith SETERRQ(PETSC_ERR_ARG_WRONG,"Wrong type of matrix to set column indices"); 221727a8da17SBarry Smith } 221827a8da17SBarry Smith PetscFunctionReturn(0); 221927a8da17SBarry Smith } 222027a8da17SBarry Smith 22214a2ae208SSatish Balay #undef __FUNCT__ 2222985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_SeqBAIJ" 2223985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_SeqBAIJ(Mat A,Vec v,PetscInt idx[]) 2224273d9f13SBarry Smith { 2225273d9f13SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 2226dfbe8321SBarry Smith PetscErrorCode ierr; 2227c1ac3661SBarry Smith PetscInt i,j,n,row,bs,*ai,*aj,mbs; 2228273d9f13SBarry Smith PetscReal atmp; 222987828ca2SBarry Smith PetscScalar *x,zero = 0.0; 2230273d9f13SBarry Smith MatScalar *aa; 2231c1ac3661SBarry Smith PetscInt ncols,brow,krow,kcol; 2232273d9f13SBarry Smith 2233273d9f13SBarry Smith PetscFunctionBegin; 2234273d9f13SBarry Smith if (A->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 2235899cda47SBarry Smith bs = A->rmap.bs; 2236273d9f13SBarry Smith aa = a->a; 2237273d9f13SBarry Smith ai = a->i; 2238273d9f13SBarry Smith aj = a->j; 2239273d9f13SBarry Smith mbs = a->mbs; 2240273d9f13SBarry Smith 22412dcb1b2aSMatthew Knepley ierr = VecSet(v,zero);CHKERRQ(ierr); 2242985db425SBarry Smith if (idx) { 2243985db425SBarry Smith for (i=0; i<A->rmap.n;i++) idx[i] = 0; 2244985db425SBarry Smith } 22451ebc52fbSHong Zhang ierr = VecGetArray(v,&x);CHKERRQ(ierr); 2246273d9f13SBarry Smith ierr = VecGetLocalSize(v,&n);CHKERRQ(ierr); 2247899cda47SBarry Smith if (n != A->rmap.N) SETERRQ(PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector"); 2248273d9f13SBarry Smith for (i=0; i<mbs; i++) { 2249273d9f13SBarry Smith ncols = ai[1] - ai[0]; ai++; 2250273d9f13SBarry Smith brow = bs*i; 2251273d9f13SBarry Smith for (j=0; j<ncols; j++){ 2252273d9f13SBarry Smith for (kcol=0; kcol<bs; kcol++){ 2253273d9f13SBarry Smith for (krow=0; krow<bs; krow++){ 2254273d9f13SBarry Smith atmp = PetscAbsScalar(*aa);aa++; 2255273d9f13SBarry Smith row = brow + krow; /* row index */ 2256a83599f4SBarry Smith /* printf("val[%d,%d]: %G\n",row,bcol+kcol,atmp); */ 2257985db425SBarry Smith if (PetscAbsScalar(x[row]) < atmp) {x[row] = atmp; if (idx) idx[row] = bs*(*aj) + kcol;} 2258273d9f13SBarry Smith } 2259273d9f13SBarry Smith } 2260273d9f13SBarry Smith aj++; 2261273d9f13SBarry Smith } 2262273d9f13SBarry Smith } 22631ebc52fbSHong Zhang ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 2264273d9f13SBarry Smith PetscFunctionReturn(0); 2265273d9f13SBarry Smith } 2266273d9f13SBarry Smith 22674a2ae208SSatish Balay #undef __FUNCT__ 22683c896bc6SHong Zhang #define __FUNCT__ "MatCopy_SeqBAIJ" 22693c896bc6SHong Zhang PetscErrorCode MatCopy_SeqBAIJ(Mat A,Mat B,MatStructure str) 22703c896bc6SHong Zhang { 22713c896bc6SHong Zhang PetscErrorCode ierr; 22723c896bc6SHong Zhang 22733c896bc6SHong Zhang PetscFunctionBegin; 22743c896bc6SHong Zhang /* If the two matrices have the same copy implementation, use fast copy. */ 22753c896bc6SHong Zhang if (str == SAME_NONZERO_PATTERN && (A->ops->copy == B->ops->copy)) { 22763c896bc6SHong Zhang Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 22773c896bc6SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)B->data; 22783c896bc6SHong Zhang 2279899cda47SBarry Smith if (a->i[A->rmap.N] != b->i[B->rmap.N]) { 22803c896bc6SHong Zhang SETERRQ(PETSC_ERR_ARG_INCOMP,"Number of nonzeros in two matrices are different"); 22813c896bc6SHong Zhang } 2282899cda47SBarry Smith ierr = PetscMemcpy(b->a,a->a,(a->i[A->rmap.N])*sizeof(PetscScalar));CHKERRQ(ierr); 22833c896bc6SHong Zhang } else { 22843c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 22853c896bc6SHong Zhang } 22863c896bc6SHong Zhang PetscFunctionReturn(0); 22873c896bc6SHong Zhang } 22883c896bc6SHong Zhang 22893c896bc6SHong Zhang #undef __FUNCT__ 22904a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_SeqBAIJ" 2291dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_SeqBAIJ(Mat A) 2292273d9f13SBarry Smith { 2293dfbe8321SBarry Smith PetscErrorCode ierr; 2294273d9f13SBarry Smith 2295273d9f13SBarry Smith PetscFunctionBegin; 22967edd0491SSatish Balay ierr = MatSeqBAIJSetPreallocation_SeqBAIJ(A,PetscMax(A->rmap.bs,1),PETSC_DEFAULT,0);CHKERRQ(ierr); 2297273d9f13SBarry Smith PetscFunctionReturn(0); 2298273d9f13SBarry Smith } 2299273d9f13SBarry Smith 23004a2ae208SSatish Balay #undef __FUNCT__ 23014a2ae208SSatish Balay #define __FUNCT__ "MatGetArray_SeqBAIJ" 2302dfbe8321SBarry Smith PetscErrorCode MatGetArray_SeqBAIJ(Mat A,PetscScalar *array[]) 2303f2a5309cSSatish Balay { 2304f2a5309cSSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 2305f2a5309cSSatish Balay PetscFunctionBegin; 2306f2a5309cSSatish Balay *array = a->a; 2307f2a5309cSSatish Balay PetscFunctionReturn(0); 2308f2a5309cSSatish Balay } 2309f2a5309cSSatish Balay 23104a2ae208SSatish Balay #undef __FUNCT__ 23114a2ae208SSatish Balay #define __FUNCT__ "MatRestoreArray_SeqBAIJ" 2312dfbe8321SBarry Smith PetscErrorCode MatRestoreArray_SeqBAIJ(Mat A,PetscScalar *array[]) 2313f2a5309cSSatish Balay { 2314f2a5309cSSatish Balay PetscFunctionBegin; 2315f2a5309cSSatish Balay PetscFunctionReturn(0); 2316f2a5309cSSatish Balay } 2317f2a5309cSSatish Balay 231842ee4b1aSHong Zhang #include "petscblaslapack.h" 231942ee4b1aSHong Zhang #undef __FUNCT__ 232042ee4b1aSHong Zhang #define __FUNCT__ "MatAXPY_SeqBAIJ" 2321f4df32b1SMatthew Knepley PetscErrorCode MatAXPY_SeqBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 232242ee4b1aSHong Zhang { 232342ee4b1aSHong Zhang Mat_SeqBAIJ *x = (Mat_SeqBAIJ *)X->data,*y = (Mat_SeqBAIJ *)Y->data; 2324dfbe8321SBarry Smith PetscErrorCode ierr; 2325899cda47SBarry Smith PetscInt i,bs=Y->rmap.bs,j,bs2; 23260805154bSBarry Smith PetscBLASInt one=1,bnz = PetscBLASIntCast(x->nz); 232742ee4b1aSHong Zhang 232842ee4b1aSHong Zhang PetscFunctionBegin; 232942ee4b1aSHong Zhang if (str == SAME_NONZERO_PATTERN) { 2330f4df32b1SMatthew Knepley PetscScalar alpha = a; 2331f4df32b1SMatthew Knepley BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one); 2332c537a176SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 2333c4319e64SHong Zhang if (y->xtoy && y->XtoY != X) { 2334c4319e64SHong Zhang ierr = PetscFree(y->xtoy);CHKERRQ(ierr); 2335c4319e64SHong Zhang ierr = MatDestroy(y->XtoY);CHKERRQ(ierr); 2336c537a176SHong Zhang } 2337c4319e64SHong Zhang if (!y->xtoy) { /* get xtoy */ 2338c4319e64SHong Zhang ierr = MatAXPYGetxtoy_Private(x->mbs,x->i,x->j,PETSC_NULL, y->i,y->j,PETSC_NULL, &y->xtoy);CHKERRQ(ierr); 2339c4319e64SHong Zhang y->XtoY = X; 2340c537a176SHong Zhang } 2341c4319e64SHong Zhang bs2 = bs*bs; 2342c537a176SHong Zhang for (i=0; i<x->nz; i++) { 2343c4319e64SHong Zhang j = 0; 2344c4319e64SHong Zhang while (j < bs2){ 2345f4df32b1SMatthew Knepley y->a[bs2*y->xtoy[i]+j] += a*(x->a[bs2*i+j]); 2346c4319e64SHong Zhang j++; 2347c537a176SHong Zhang } 2348c4319e64SHong Zhang } 23491e2582c4SBarry Smith ierr = PetscInfo3(Y,"ratio of nnz(X)/nnz(Y): %D/%D = %G\n",bs2*x->nz,bs2*y->nz,(PetscReal)(bs2*x->nz)/(bs2*y->nz));CHKERRQ(ierr); 235042ee4b1aSHong Zhang } else { 2351f4df32b1SMatthew Knepley ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 235242ee4b1aSHong Zhang } 235342ee4b1aSHong Zhang PetscFunctionReturn(0); 235442ee4b1aSHong Zhang } 235542ee4b1aSHong Zhang 235699cafbc1SBarry Smith #undef __FUNCT__ 235799cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_SeqBAIJ" 235899cafbc1SBarry Smith PetscErrorCode MatRealPart_SeqBAIJ(Mat A) 235999cafbc1SBarry Smith { 236099cafbc1SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 236199cafbc1SBarry Smith PetscInt i,nz = a->bs2*a->i[a->mbs]; 2362*dd6ea824SBarry Smith MatScalar *aa = a->a; 236399cafbc1SBarry Smith 236499cafbc1SBarry Smith PetscFunctionBegin; 236599cafbc1SBarry Smith for (i=0; i<nz; i++) aa[i] = PetscRealPart(aa[i]); 236699cafbc1SBarry Smith PetscFunctionReturn(0); 236799cafbc1SBarry Smith } 236899cafbc1SBarry Smith 236999cafbc1SBarry Smith #undef __FUNCT__ 237099cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_SeqBAIJ" 237199cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_SeqBAIJ(Mat A) 237299cafbc1SBarry Smith { 237399cafbc1SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 237499cafbc1SBarry Smith PetscInt i,nz = a->bs2*a->i[a->mbs]; 2375*dd6ea824SBarry Smith MatScalar *aa = a->a; 237699cafbc1SBarry Smith 237799cafbc1SBarry Smith PetscFunctionBegin; 237899cafbc1SBarry Smith for (i=0; i<nz; i++) aa[i] = PetscImaginaryPart(aa[i]); 237999cafbc1SBarry Smith PetscFunctionReturn(0); 238099cafbc1SBarry Smith } 238199cafbc1SBarry Smith 238299cafbc1SBarry Smith 23832593348eSBarry Smith /* -------------------------------------------------------------------*/ 2384cc2dc46cSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_SeqBAIJ, 2385cc2dc46cSBarry Smith MatGetRow_SeqBAIJ, 2386cc2dc46cSBarry Smith MatRestoreRow_SeqBAIJ, 2387cc2dc46cSBarry Smith MatMult_SeqBAIJ_N, 238897304618SKris Buschelman /* 4*/ MatMultAdd_SeqBAIJ_N, 23897c922b88SBarry Smith MatMultTranspose_SeqBAIJ, 23907c922b88SBarry Smith MatMultTransposeAdd_SeqBAIJ, 2391cc2dc46cSBarry Smith MatSolve_SeqBAIJ_N, 2392cc2dc46cSBarry Smith 0, 2393cc2dc46cSBarry Smith 0, 239497304618SKris Buschelman /*10*/ 0, 2395cc2dc46cSBarry Smith MatLUFactor_SeqBAIJ, 2396cc2dc46cSBarry Smith 0, 2397b6490206SBarry Smith 0, 2398f2501298SSatish Balay MatTranspose_SeqBAIJ, 239997304618SKris Buschelman /*15*/ MatGetInfo_SeqBAIJ, 2400cc2dc46cSBarry Smith MatEqual_SeqBAIJ, 2401cc2dc46cSBarry Smith MatGetDiagonal_SeqBAIJ, 2402cc2dc46cSBarry Smith MatDiagonalScale_SeqBAIJ, 2403cc2dc46cSBarry Smith MatNorm_SeqBAIJ, 240497304618SKris Buschelman /*20*/ 0, 2405cc2dc46cSBarry Smith MatAssemblyEnd_SeqBAIJ, 2406cc2dc46cSBarry Smith 0, 2407cc2dc46cSBarry Smith MatSetOption_SeqBAIJ, 2408cc2dc46cSBarry Smith MatZeroEntries_SeqBAIJ, 240997304618SKris Buschelman /*25*/ MatZeroRows_SeqBAIJ, 2410cc2dc46cSBarry Smith MatLUFactorSymbolic_SeqBAIJ, 2411cc2dc46cSBarry Smith MatLUFactorNumeric_SeqBAIJ_N, 2412c05c3958SHong Zhang MatCholeskyFactorSymbolic_SeqBAIJ, 2413c05c3958SHong Zhang MatCholeskyFactorNumeric_SeqBAIJ_N, 241497304618SKris Buschelman /*30*/ MatSetUpPreallocation_SeqBAIJ, 2415cc2dc46cSBarry Smith MatILUFactorSymbolic_SeqBAIJ, 2416c05c3958SHong Zhang MatICCFactorSymbolic_SeqBAIJ, 2417f2a5309cSSatish Balay MatGetArray_SeqBAIJ, 2418f2a5309cSSatish Balay MatRestoreArray_SeqBAIJ, 241997304618SKris Buschelman /*35*/ MatDuplicate_SeqBAIJ, 2420cc2dc46cSBarry Smith 0, 2421cc2dc46cSBarry Smith 0, 2422cc2dc46cSBarry Smith MatILUFactor_SeqBAIJ, 2423cc2dc46cSBarry Smith 0, 242497304618SKris Buschelman /*40*/ MatAXPY_SeqBAIJ, 2425cc2dc46cSBarry Smith MatGetSubMatrices_SeqBAIJ, 2426cc2dc46cSBarry Smith MatIncreaseOverlap_SeqBAIJ, 2427cc2dc46cSBarry Smith MatGetValues_SeqBAIJ, 24283c896bc6SHong Zhang MatCopy_SeqBAIJ, 24298c07d4e3SBarry Smith /*45*/ 0, 2430cc2dc46cSBarry Smith MatScale_SeqBAIJ, 2431cc2dc46cSBarry Smith 0, 2432cc2dc46cSBarry Smith 0, 2433cc2dc46cSBarry Smith 0, 2434521d7252SBarry Smith /*50*/ 0, 24353b2fbd54SBarry Smith MatGetRowIJ_SeqBAIJ, 243692c4ed94SBarry Smith MatRestoreRowIJ_SeqBAIJ, 2437cc2dc46cSBarry Smith 0, 2438cc2dc46cSBarry Smith 0, 243997304618SKris Buschelman /*55*/ 0, 2440cc2dc46cSBarry Smith 0, 2441cc2dc46cSBarry Smith 0, 2442cc2dc46cSBarry Smith 0, 2443d3825aa8SBarry Smith MatSetValuesBlocked_SeqBAIJ, 244497304618SKris Buschelman /*60*/ MatGetSubMatrix_SeqBAIJ, 2445b9b97703SBarry Smith MatDestroy_SeqBAIJ, 2446b9b97703SBarry Smith MatView_SeqBAIJ, 2447357abbc8SBarry Smith 0, 2448273d9f13SBarry Smith 0, 244997304618SKris Buschelman /*65*/ 0, 2450273d9f13SBarry Smith 0, 2451273d9f13SBarry Smith 0, 2452273d9f13SBarry Smith 0, 2453273d9f13SBarry Smith 0, 2454985db425SBarry Smith /*70*/ MatGetRowMaxAbs_SeqBAIJ, 245597304618SKris Buschelman MatConvert_Basic, 2456273d9f13SBarry Smith 0, 245797304618SKris Buschelman 0, 245897304618SKris Buschelman 0, 245997304618SKris Buschelman /*75*/ 0, 246097304618SKris Buschelman 0, 246197304618SKris Buschelman 0, 246297304618SKris Buschelman 0, 246397304618SKris Buschelman 0, 246497304618SKris Buschelman /*80*/ 0, 246597304618SKris Buschelman 0, 246697304618SKris Buschelman 0, 246797304618SKris Buschelman 0, 2468865e5f61SKris Buschelman MatLoad_SeqBAIJ, 2469865e5f61SKris Buschelman /*85*/ 0, 2470b01c7715SBarry Smith 0, 2471b01c7715SBarry Smith 0, 2472b01c7715SBarry Smith 0, 2473865e5f61SKris Buschelman 0, 2474865e5f61SKris Buschelman /*90*/ 0, 2475865e5f61SKris Buschelman 0, 2476865e5f61SKris Buschelman 0, 2477865e5f61SKris Buschelman 0, 2478865e5f61SKris Buschelman 0, 2479865e5f61SKris Buschelman /*95*/ 0, 2480865e5f61SKris Buschelman 0, 2481865e5f61SKris Buschelman 0, 248299cafbc1SBarry Smith 0, 248399cafbc1SBarry Smith 0, 248499cafbc1SBarry Smith /*100*/0, 248599cafbc1SBarry Smith 0, 248699cafbc1SBarry Smith 0, 248799cafbc1SBarry Smith 0, 248899cafbc1SBarry Smith 0, 248999cafbc1SBarry Smith /*105*/0, 249099cafbc1SBarry Smith MatRealPart_SeqBAIJ, 24912af78befSBarry Smith MatImaginaryPart_SeqBAIJ, 24922af78befSBarry Smith 0, 24932af78befSBarry Smith 0, 24942af78befSBarry Smith /*110*/0, 24952af78befSBarry Smith 0, 24962af78befSBarry Smith 0, 24972af78befSBarry Smith 0, 24982af78befSBarry Smith MatMissingDiagonal_SeqBAIJ 24992af78befSBarry Smith /*115*/ 250099cafbc1SBarry Smith }; 25012593348eSBarry Smith 25023e90b805SBarry Smith EXTERN_C_BEGIN 25034a2ae208SSatish Balay #undef __FUNCT__ 25044a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_SeqBAIJ" 2505be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_SeqBAIJ(Mat mat) 25063e90b805SBarry Smith { 25073e90b805SBarry Smith Mat_SeqBAIJ *aij = (Mat_SeqBAIJ *)mat->data; 2508899cda47SBarry Smith PetscInt nz = aij->i[mat->rmap.N]*mat->rmap.bs*aij->bs2; 2509dfbe8321SBarry Smith PetscErrorCode ierr; 25103e90b805SBarry Smith 25113e90b805SBarry Smith PetscFunctionBegin; 25123e90b805SBarry Smith if (aij->nonew != 1) { 2513512a5fc5SBarry Smith SETERRQ(PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first"); 25143e90b805SBarry Smith } 25153e90b805SBarry Smith 25163e90b805SBarry Smith /* allocate space for values if not already there */ 25173e90b805SBarry Smith if (!aij->saved_values) { 251887828ca2SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&aij->saved_values);CHKERRQ(ierr); 25193e90b805SBarry Smith } 25203e90b805SBarry Smith 25213e90b805SBarry Smith /* copy values over */ 252287828ca2SBarry Smith ierr = PetscMemcpy(aij->saved_values,aij->a,nz*sizeof(PetscScalar));CHKERRQ(ierr); 25233e90b805SBarry Smith PetscFunctionReturn(0); 25243e90b805SBarry Smith } 25253e90b805SBarry Smith EXTERN_C_END 25263e90b805SBarry Smith 25273e90b805SBarry Smith EXTERN_C_BEGIN 25284a2ae208SSatish Balay #undef __FUNCT__ 25294a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_SeqBAIJ" 2530be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_SeqBAIJ(Mat mat) 25313e90b805SBarry Smith { 25323e90b805SBarry Smith Mat_SeqBAIJ *aij = (Mat_SeqBAIJ *)mat->data; 25336849ba73SBarry Smith PetscErrorCode ierr; 2534899cda47SBarry Smith PetscInt nz = aij->i[mat->rmap.N]*mat->rmap.bs*aij->bs2; 25353e90b805SBarry Smith 25363e90b805SBarry Smith PetscFunctionBegin; 25373e90b805SBarry Smith if (aij->nonew != 1) { 2538512a5fc5SBarry Smith SETERRQ(PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first"); 25393e90b805SBarry Smith } 25403e90b805SBarry Smith if (!aij->saved_values) { 2541634064b4SBarry Smith SETERRQ(PETSC_ERR_ORDER,"Must call MatStoreValues(A);first"); 25423e90b805SBarry Smith } 25433e90b805SBarry Smith 25443e90b805SBarry Smith /* copy values over */ 254587828ca2SBarry Smith ierr = PetscMemcpy(aij->a,aij->saved_values,nz*sizeof(PetscScalar));CHKERRQ(ierr); 25463e90b805SBarry Smith PetscFunctionReturn(0); 25473e90b805SBarry Smith } 25483e90b805SBarry Smith EXTERN_C_END 25493e90b805SBarry Smith 2550273d9f13SBarry Smith EXTERN_C_BEGIN 2551f69a0ea3SMatthew Knepley extern PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_SeqBAIJ_SeqAIJ(Mat, MatType,MatReuse,Mat*); 2552f69a0ea3SMatthew Knepley extern PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_SeqBAIJ_SeqSBAIJ(Mat, MatType,MatReuse,Mat*); 2553273d9f13SBarry Smith EXTERN_C_END 2554273d9f13SBarry Smith 2555273d9f13SBarry Smith EXTERN_C_BEGIN 25564a2ae208SSatish Balay #undef __FUNCT__ 2557a23d5eceSKris Buschelman #define __FUNCT__ "MatSeqBAIJSetPreallocation_SeqBAIJ" 2558be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJSetPreallocation_SeqBAIJ(Mat B,PetscInt bs,PetscInt nz,PetscInt *nnz) 2559a23d5eceSKris Buschelman { 2560a23d5eceSKris Buschelman Mat_SeqBAIJ *b; 25616849ba73SBarry Smith PetscErrorCode ierr; 2562a96a251dSBarry Smith PetscInt i,mbs,nbs,bs2,newbs = bs; 2563ab93d7beSBarry Smith PetscTruth flg,skipallocation = PETSC_FALSE; 2564a23d5eceSKris Buschelman 2565a23d5eceSKris Buschelman PetscFunctionBegin; 2566a23d5eceSKris Buschelman 2567ab93d7beSBarry Smith if (nz == MAT_SKIP_ALLOCATION) { 2568ab93d7beSBarry Smith skipallocation = PETSC_TRUE; 2569ab93d7beSBarry Smith nz = 0; 2570ab93d7beSBarry Smith } 25718c07d4e3SBarry Smith 25727adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Block options for SEQBAIJ matrix 1","Mat");CHKERRQ(ierr); 257317667f90SBarry Smith ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatSeqBAIJSetPreallocation",bs,&newbs,PETSC_NULL);CHKERRQ(ierr); 25748c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 25758c07d4e3SBarry Smith 2576a23d5eceSKris Buschelman if (nnz && newbs != bs) { 2577634064b4SBarry Smith SETERRQ(PETSC_ERR_ARG_WRONG,"Cannot change blocksize from command line if setting nnz"); 2578a23d5eceSKris Buschelman } 2579a23d5eceSKris Buschelman bs = newbs; 2580a23d5eceSKris Buschelman 2581899cda47SBarry Smith B->rmap.bs = B->cmap.bs = bs; 25826148ca0dSBarry Smith ierr = PetscMapSetUp(&B->rmap);CHKERRQ(ierr); 25836148ca0dSBarry Smith ierr = PetscMapSetUp(&B->cmap);CHKERRQ(ierr); 2584899cda47SBarry Smith 2585899cda47SBarry Smith B->preallocated = PETSC_TRUE; 2586899cda47SBarry Smith 2587899cda47SBarry Smith mbs = B->rmap.n/bs; 2588899cda47SBarry Smith nbs = B->cmap.n/bs; 2589a23d5eceSKris Buschelman bs2 = bs*bs; 2590a23d5eceSKris Buschelman 2591899cda47SBarry Smith if (mbs*bs!=B->rmap.n || nbs*bs!=B->cmap.n) { 2592899cda47SBarry Smith SETERRQ3(PETSC_ERR_ARG_SIZ,"Number rows %D, cols %D must be divisible by blocksize %D",B->rmap.N,B->cmap.n,bs); 2593a23d5eceSKris Buschelman } 2594a23d5eceSKris Buschelman 2595a23d5eceSKris Buschelman if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 5; 259677431f27SBarry Smith if (nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"nz cannot be less than 0: value %D",nz); 2597a23d5eceSKris Buschelman if (nnz) { 2598a23d5eceSKris Buschelman for (i=0; i<mbs; i++) { 259977431f27SBarry Smith if (nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"nnz cannot be less than 0: local row %D value %D",i,nnz[i]); 260077431f27SBarry Smith if (nnz[i] > nbs) SETERRQ3(PETSC_ERR_ARG_OUTOFRANGE,"nnz cannot be greater than block row length: local row %D value %D rowlength %D",i,nnz[i],nbs); 2601a23d5eceSKris Buschelman } 2602a23d5eceSKris Buschelman } 2603a23d5eceSKris Buschelman 2604a23d5eceSKris Buschelman b = (Mat_SeqBAIJ*)B->data; 26057adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Optimize options for SEQBAIJ matrix 2 ","Mat");CHKERRQ(ierr); 26068c07d4e3SBarry Smith ierr = PetscOptionsTruth("-mat_no_unroll","Do not optimize for block size (slow)",PETSC_NULL,PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr); 26078c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 26088c07d4e3SBarry Smith 2609a23d5eceSKris Buschelman B->ops->solve = MatSolve_SeqBAIJ_Update; 2610a23d5eceSKris Buschelman B->ops->solvetranspose = MatSolveTranspose_SeqBAIJ_Update; 2611a23d5eceSKris Buschelman if (!flg) { 2612a23d5eceSKris Buschelman switch (bs) { 2613a23d5eceSKris Buschelman case 1: 2614a23d5eceSKris Buschelman B->ops->lufactornumeric = MatLUFactorNumeric_SeqBAIJ_1; 2615a23d5eceSKris Buschelman B->ops->mult = MatMult_SeqBAIJ_1; 2616a23d5eceSKris Buschelman B->ops->multadd = MatMultAdd_SeqBAIJ_1; 26176d3beeddSMatthew Knepley B->ops->pbrelax = MatPBRelax_SeqBAIJ_1; 2618a23d5eceSKris Buschelman break; 2619a23d5eceSKris Buschelman case 2: 2620a23d5eceSKris Buschelman B->ops->lufactornumeric = MatLUFactorNumeric_SeqBAIJ_2; 2621a23d5eceSKris Buschelman B->ops->mult = MatMult_SeqBAIJ_2; 2622a23d5eceSKris Buschelman B->ops->multadd = MatMultAdd_SeqBAIJ_2; 2623b01c7715SBarry Smith B->ops->pbrelax = MatPBRelax_SeqBAIJ_2; 2624a23d5eceSKris Buschelman break; 2625a23d5eceSKris Buschelman case 3: 2626a23d5eceSKris Buschelman B->ops->lufactornumeric = MatLUFactorNumeric_SeqBAIJ_3; 2627a23d5eceSKris Buschelman B->ops->mult = MatMult_SeqBAIJ_3; 2628a23d5eceSKris Buschelman B->ops->multadd = MatMultAdd_SeqBAIJ_3; 2629b01c7715SBarry Smith B->ops->pbrelax = MatPBRelax_SeqBAIJ_3; 2630a23d5eceSKris Buschelman break; 2631a23d5eceSKris Buschelman case 4: 2632a23d5eceSKris Buschelman B->ops->lufactornumeric = MatLUFactorNumeric_SeqBAIJ_4; 2633a23d5eceSKris Buschelman B->ops->mult = MatMult_SeqBAIJ_4; 2634a23d5eceSKris Buschelman B->ops->multadd = MatMultAdd_SeqBAIJ_4; 2635b01c7715SBarry Smith B->ops->pbrelax = MatPBRelax_SeqBAIJ_4; 2636a23d5eceSKris Buschelman break; 2637a23d5eceSKris Buschelman case 5: 2638a23d5eceSKris Buschelman B->ops->lufactornumeric = MatLUFactorNumeric_SeqBAIJ_5; 2639a23d5eceSKris Buschelman B->ops->mult = MatMult_SeqBAIJ_5; 2640a23d5eceSKris Buschelman B->ops->multadd = MatMultAdd_SeqBAIJ_5; 2641b01c7715SBarry Smith B->ops->pbrelax = MatPBRelax_SeqBAIJ_5; 2642a23d5eceSKris Buschelman break; 2643a23d5eceSKris Buschelman case 6: 2644a23d5eceSKris Buschelman B->ops->lufactornumeric = MatLUFactorNumeric_SeqBAIJ_6; 2645a23d5eceSKris Buschelman B->ops->mult = MatMult_SeqBAIJ_6; 2646a23d5eceSKris Buschelman B->ops->multadd = MatMultAdd_SeqBAIJ_6; 26476d3beeddSMatthew Knepley B->ops->pbrelax = MatPBRelax_SeqBAIJ_6; 2648a23d5eceSKris Buschelman break; 2649a23d5eceSKris Buschelman case 7: 2650a23d5eceSKris Buschelman B->ops->lufactornumeric = MatLUFactorNumeric_SeqBAIJ_7; 2651a23d5eceSKris Buschelman B->ops->mult = MatMult_SeqBAIJ_7; 2652a23d5eceSKris Buschelman B->ops->multadd = MatMultAdd_SeqBAIJ_7; 26536d3beeddSMatthew Knepley B->ops->pbrelax = MatPBRelax_SeqBAIJ_7; 2654a23d5eceSKris Buschelman break; 2655a23d5eceSKris Buschelman default: 2656a23d5eceSKris Buschelman B->ops->lufactornumeric = MatLUFactorNumeric_SeqBAIJ_N; 2657a23d5eceSKris Buschelman B->ops->mult = MatMult_SeqBAIJ_N; 2658a23d5eceSKris Buschelman B->ops->multadd = MatMultAdd_SeqBAIJ_N; 2659a23d5eceSKris Buschelman break; 2660a23d5eceSKris Buschelman } 2661a23d5eceSKris Buschelman } 2662899cda47SBarry Smith B->rmap.bs = bs; 2663a23d5eceSKris Buschelman b->mbs = mbs; 2664a23d5eceSKris Buschelman b->nbs = nbs; 2665ab93d7beSBarry Smith if (!skipallocation) { 26662ee49352SLisandro Dalcin if (!b->imax) { 2667ab93d7beSBarry Smith ierr = PetscMalloc2(mbs,PetscInt,&b->imax,mbs,PetscInt,&b->ilen);CHKERRQ(ierr); 26682ee49352SLisandro Dalcin } 2669ab93d7beSBarry Smith /* b->ilen will count nonzeros in each block row so far. */ 2670ab93d7beSBarry Smith for (i=0; i<mbs; i++) { b->ilen[i] = 0;} 2671a23d5eceSKris Buschelman if (!nnz) { 2672a23d5eceSKris Buschelman if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 5; 2673a23d5eceSKris Buschelman else if (nz <= 0) nz = 1; 2674a23d5eceSKris Buschelman for (i=0; i<mbs; i++) b->imax[i] = nz; 2675a23d5eceSKris Buschelman nz = nz*mbs; 2676a23d5eceSKris Buschelman } else { 2677a23d5eceSKris Buschelman nz = 0; 2678a23d5eceSKris Buschelman for (i=0; i<mbs; i++) {b->imax[i] = nnz[i]; nz += nnz[i];} 2679a23d5eceSKris Buschelman } 2680a23d5eceSKris Buschelman 2681a23d5eceSKris Buschelman /* allocate the matrix space */ 26822ee49352SLisandro Dalcin ierr = MatSeqXAIJFreeAIJ(B,&b->a,&b->j,&b->i);CHKERRQ(ierr); 2683899cda47SBarry Smith ierr = PetscMalloc3(bs2*nz,PetscScalar,&b->a,nz,PetscInt,&b->j,B->rmap.N+1,PetscInt,&b->i);CHKERRQ(ierr); 26842ee49352SLisandro Dalcin ierr = PetscLogObjectMemory(B,(B->rmap.N+1)*sizeof(PetscInt)+nz*(bs2*sizeof(PetscScalar)+sizeof(PetscInt)));CHKERRQ(ierr); 2685a23d5eceSKris Buschelman ierr = PetscMemzero(b->a,nz*bs2*sizeof(MatScalar));CHKERRQ(ierr); 2686c1ac3661SBarry Smith ierr = PetscMemzero(b->j,nz*sizeof(PetscInt));CHKERRQ(ierr); 2687a23d5eceSKris Buschelman b->singlemalloc = PETSC_TRUE; 2688a23d5eceSKris Buschelman b->i[0] = 0; 2689a23d5eceSKris Buschelman for (i=1; i<mbs+1; i++) { 2690a23d5eceSKris Buschelman b->i[i] = b->i[i-1] + b->imax[i-1]; 2691a23d5eceSKris Buschelman } 2692e6b907acSBarry Smith b->free_a = PETSC_TRUE; 2693e6b907acSBarry Smith b->free_ij = PETSC_TRUE; 2694e811da20SHong Zhang } else { 2695e6b907acSBarry Smith b->free_a = PETSC_FALSE; 2696e6b907acSBarry Smith b->free_ij = PETSC_FALSE; 2697ab93d7beSBarry Smith } 2698a23d5eceSKris Buschelman 2699899cda47SBarry Smith B->rmap.bs = bs; 2700a23d5eceSKris Buschelman b->bs2 = bs2; 2701a23d5eceSKris Buschelman b->mbs = mbs; 2702a23d5eceSKris Buschelman b->nz = 0; 2703a23d5eceSKris Buschelman b->maxnz = nz*bs2; 2704a23d5eceSKris Buschelman B->info.nz_unneeded = (PetscReal)b->maxnz; 2705a23d5eceSKris Buschelman PetscFunctionReturn(0); 2706a23d5eceSKris Buschelman } 2707a23d5eceSKris Buschelman EXTERN_C_END 2708a23d5eceSKris Buschelman 27090bad9183SKris Buschelman /*MC 2710fafad747SKris Buschelman MATSEQBAIJ - MATSEQBAIJ = "seqbaij" - A matrix type to be used for sequential block sparse matrices, based on 27110bad9183SKris Buschelman block sparse compressed row format. 27120bad9183SKris Buschelman 27130bad9183SKris Buschelman Options Database Keys: 27140bad9183SKris Buschelman . -mat_type seqbaij - sets the matrix type to "seqbaij" during a call to MatSetFromOptions() 27150bad9183SKris Buschelman 27160bad9183SKris Buschelman Level: beginner 27170bad9183SKris Buschelman 2718f0c06035SSatish Balay .seealso: MatCreateSeqBAIJ() 27190bad9183SKris Buschelman M*/ 27200bad9183SKris Buschelman 2721a23d5eceSKris Buschelman EXTERN_C_BEGIN 2722a23d5eceSKris Buschelman #undef __FUNCT__ 27234a2ae208SSatish Balay #define __FUNCT__ "MatCreate_SeqBAIJ" 2724be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SeqBAIJ(Mat B) 27252593348eSBarry Smith { 2726dfbe8321SBarry Smith PetscErrorCode ierr; 2727c1ac3661SBarry Smith PetscMPIInt size; 2728b6490206SBarry Smith Mat_SeqBAIJ *b; 27293b2fbd54SBarry Smith 27303a40ed3dSBarry Smith PetscFunctionBegin; 27317adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)B)->comm,&size);CHKERRQ(ierr); 273229bbc08cSBarry Smith if (size > 1) SETERRQ(PETSC_ERR_ARG_WRONG,"Comm must be of size 1"); 2733b6490206SBarry Smith 273438f2d2fdSLisandro Dalcin ierr = PetscNewLog(B,Mat_SeqBAIJ,&b);CHKERRQ(ierr); 2735b0a32e0cSBarry Smith B->data = (void*)b; 2736549d3d68SSatish Balay ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 27372593348eSBarry Smith B->factor = 0; 273890f02eecSBarry Smith B->mapping = 0; 27392593348eSBarry Smith b->row = 0; 27402593348eSBarry Smith b->col = 0; 2741e51c0b9cSSatish Balay b->icol = 0; 27422593348eSBarry Smith b->reallocs = 0; 27433e90b805SBarry Smith b->saved_values = 0; 27442593348eSBarry Smith 2745c4992f7dSBarry Smith b->roworiented = PETSC_TRUE; 27462593348eSBarry Smith b->nonew = 0; 27472593348eSBarry Smith b->diag = 0; 27482593348eSBarry Smith b->solve_work = 0; 2749de6a44a3SBarry Smith b->mult_work = 0; 27502a1b7f2aSHong Zhang B->spptr = 0; 27510e6d2581SBarry Smith B->info.nz_unneeded = (PetscReal)b->maxnz; 2752883fce79SBarry Smith b->keepzeroedrows = PETSC_FALSE; 2753c4319e64SHong Zhang b->xtoy = 0; 2754c4319e64SHong Zhang b->XtoY = 0; 275573e7a558SHong Zhang b->compressedrow.use = PETSC_FALSE; 275626e093fcSHong Zhang b->compressedrow.nrows = 0; 275773e7a558SHong Zhang b->compressedrow.i = PETSC_NULL; 275873e7a558SHong Zhang b->compressedrow.rindex = PETSC_NULL; 275973e7a558SHong Zhang b->compressedrow.checked = PETSC_FALSE; 276088e51ccdSHong Zhang B->same_nonzero = PETSC_FALSE; 27614e220ebcSLois Curfman McInnes 276243516a2dSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSeqBAIJInvertBlockDiagonal_C", 276343516a2dSKris Buschelman "MatInvertBlockDiagonal_SeqBAIJ", 276443516a2dSKris Buschelman MatInvertBlockDiagonal_SeqBAIJ);CHKERRQ(ierr); 2765f1af5d2fSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 27663e90b805SBarry Smith "MatStoreValues_SeqBAIJ", 2767bc4b532fSSatish Balay MatStoreValues_SeqBAIJ);CHKERRQ(ierr); 2768f1af5d2fSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 27693e90b805SBarry Smith "MatRetrieveValues_SeqBAIJ", 2770bc4b532fSSatish Balay MatRetrieveValues_SeqBAIJ);CHKERRQ(ierr); 2771f1af5d2fSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSeqBAIJSetColumnIndices_C", 277227a8da17SBarry Smith "MatSeqBAIJSetColumnIndices_SeqBAIJ", 2773bc4b532fSSatish Balay MatSeqBAIJSetColumnIndices_SeqBAIJ);CHKERRQ(ierr); 2774a6175056SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_seqbaij_seqaij_C", 2775273d9f13SBarry Smith "MatConvert_SeqBAIJ_SeqAIJ", 2776273d9f13SBarry Smith MatConvert_SeqBAIJ_SeqAIJ);CHKERRQ(ierr); 2777a0e1a404SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_seqbaij_seqsbaij_C", 2778a0e1a404SHong Zhang "MatConvert_SeqBAIJ_SeqSBAIJ", 2779a0e1a404SHong Zhang MatConvert_SeqBAIJ_SeqSBAIJ);CHKERRQ(ierr); 2780a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSeqBAIJSetPreallocation_C", 2781a23d5eceSKris Buschelman "MatSeqBAIJSetPreallocation_SeqBAIJ", 2782a23d5eceSKris Buschelman MatSeqBAIJSetPreallocation_SeqBAIJ);CHKERRQ(ierr); 278317667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATSEQBAIJ);CHKERRQ(ierr); 27843a40ed3dSBarry Smith PetscFunctionReturn(0); 27852593348eSBarry Smith } 2786273d9f13SBarry Smith EXTERN_C_END 27872593348eSBarry Smith 27884a2ae208SSatish Balay #undef __FUNCT__ 27894a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_SeqBAIJ" 2790dfbe8321SBarry Smith PetscErrorCode MatDuplicate_SeqBAIJ(Mat A,MatDuplicateOption cpvalues,Mat *B) 27912593348eSBarry Smith { 27922593348eSBarry Smith Mat C; 2793b6490206SBarry Smith Mat_SeqBAIJ *c,*a = (Mat_SeqBAIJ*)A->data; 27946849ba73SBarry Smith PetscErrorCode ierr; 2795a96a251dSBarry Smith PetscInt i,mbs = a->mbs,nz = a->nz,bs2 = a->bs2; 2796de6a44a3SBarry Smith 27973a40ed3dSBarry Smith PetscFunctionBegin; 279829bbc08cSBarry Smith if (a->i[mbs] != nz) SETERRQ(PETSC_ERR_PLIB,"Corrupt matrix"); 27992593348eSBarry Smith 28002593348eSBarry Smith *B = 0; 28017adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)A)->comm,&C);CHKERRQ(ierr); 2802899cda47SBarry Smith ierr = MatSetSizes(C,A->rmap.N,A->cmap.n,A->rmap.N,A->cmap.n);CHKERRQ(ierr); 28037adad957SLisandro Dalcin ierr = MatSetType(C,((PetscObject)A)->type_name);CHKERRQ(ierr); 28041d5dac46SHong Zhang ierr = PetscMemcpy(C->ops,A->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 2805273d9f13SBarry Smith c = (Mat_SeqBAIJ*)C->data; 280644cd7ae7SLois Curfman McInnes 2807899cda47SBarry Smith C->rmap.N = A->rmap.N; 2808899cda47SBarry Smith C->cmap.N = A->cmap.N; 2809899cda47SBarry Smith C->rmap.bs = A->rmap.bs; 28109df24120SSatish Balay c->bs2 = a->bs2; 2811b6490206SBarry Smith c->mbs = a->mbs; 2812b6490206SBarry Smith c->nbs = a->nbs; 28132593348eSBarry Smith 281433b91e9fSSatish Balay ierr = PetscMalloc2(mbs,PetscInt,&c->imax,mbs,PetscInt,&c->ilen);CHKERRQ(ierr); 2815b6490206SBarry Smith for (i=0; i<mbs; i++) { 28162593348eSBarry Smith c->imax[i] = a->imax[i]; 28172593348eSBarry Smith c->ilen[i] = a->ilen[i]; 28182593348eSBarry Smith } 28192593348eSBarry Smith 28202593348eSBarry Smith /* allocate the matrix space */ 2821a96a251dSBarry Smith ierr = PetscMalloc3(bs2*nz,PetscScalar,&c->a,nz,PetscInt,&c->j,mbs+1,PetscInt,&c->i);CHKERRQ(ierr); 2822c4992f7dSBarry Smith c->singlemalloc = PETSC_TRUE; 2823c1ac3661SBarry Smith ierr = PetscMemcpy(c->i,a->i,(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr); 2824b6490206SBarry Smith if (mbs > 0) { 2825c1ac3661SBarry Smith ierr = PetscMemcpy(c->j,a->j,nz*sizeof(PetscInt));CHKERRQ(ierr); 28262e8a6d31SBarry Smith if (cpvalues == MAT_COPY_VALUES) { 2827549d3d68SSatish Balay ierr = PetscMemcpy(c->a,a->a,bs2*nz*sizeof(MatScalar));CHKERRQ(ierr); 28282e8a6d31SBarry Smith } else { 2829549d3d68SSatish Balay ierr = PetscMemzero(c->a,bs2*nz*sizeof(MatScalar));CHKERRQ(ierr); 28302593348eSBarry Smith } 28312593348eSBarry Smith } 28322593348eSBarry Smith c->roworiented = a->roworiented; 28332593348eSBarry Smith c->nonew = a->nonew; 28342593348eSBarry Smith 28352593348eSBarry Smith if (a->diag) { 2836c1ac3661SBarry Smith ierr = PetscMalloc((mbs+1)*sizeof(PetscInt),&c->diag);CHKERRQ(ierr); 283752e6d16bSBarry Smith ierr = PetscLogObjectMemory(C,(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr); 2838b6490206SBarry Smith for (i=0; i<mbs; i++) { 28392593348eSBarry Smith c->diag[i] = a->diag[i]; 28402593348eSBarry Smith } 284198305bb5SBarry Smith } else c->diag = 0; 28422593348eSBarry Smith c->nz = a->nz; 28432593348eSBarry Smith c->maxnz = a->maxnz; 28442593348eSBarry Smith c->solve_work = 0; 28457fc0212eSBarry Smith c->mult_work = 0; 2846e6b907acSBarry Smith c->free_a = PETSC_TRUE; 2847e6b907acSBarry Smith c->free_ij = PETSC_TRUE; 2848273d9f13SBarry Smith C->preallocated = PETSC_TRUE; 2849273d9f13SBarry Smith C->assembled = PETSC_TRUE; 285088e51ccdSHong Zhang 285188e51ccdSHong Zhang c->compressedrow.use = a->compressedrow.use; 285288e51ccdSHong Zhang c->compressedrow.nrows = a->compressedrow.nrows; 285388e51ccdSHong Zhang c->compressedrow.checked = a->compressedrow.checked; 285488e51ccdSHong Zhang if ( a->compressedrow.checked && a->compressedrow.use){ 285588e51ccdSHong Zhang i = a->compressedrow.nrows; 285688e51ccdSHong Zhang ierr = PetscMalloc((2*i+1)*sizeof(PetscInt),&c->compressedrow.i);CHKERRQ(ierr); 285788e51ccdSHong Zhang c->compressedrow.rindex = c->compressedrow.i + i + 1; 285888e51ccdSHong Zhang ierr = PetscMemcpy(c->compressedrow.i,a->compressedrow.i,(i+1)*sizeof(PetscInt));CHKERRQ(ierr); 285988e51ccdSHong Zhang ierr = PetscMemcpy(c->compressedrow.rindex,a->compressedrow.rindex,i*sizeof(PetscInt));CHKERRQ(ierr); 286088e51ccdSHong Zhang } else { 286188e51ccdSHong Zhang c->compressedrow.use = PETSC_FALSE; 286288e51ccdSHong Zhang c->compressedrow.i = PETSC_NULL; 286388e51ccdSHong Zhang c->compressedrow.rindex = PETSC_NULL; 286488e51ccdSHong Zhang } 286588e51ccdSHong Zhang C->same_nonzero = A->same_nonzero; 28662593348eSBarry Smith *B = C; 28677adad957SLisandro Dalcin ierr = PetscFListDuplicate(((PetscObject)A)->qlist,&((PetscObject)C)->qlist);CHKERRQ(ierr); 28683a40ed3dSBarry Smith PetscFunctionReturn(0); 28692593348eSBarry Smith } 28702593348eSBarry Smith 28714a2ae208SSatish Balay #undef __FUNCT__ 28724a2ae208SSatish Balay #define __FUNCT__ "MatLoad_SeqBAIJ" 2873f69a0ea3SMatthew Knepley PetscErrorCode MatLoad_SeqBAIJ(PetscViewer viewer, MatType type,Mat *A) 28742593348eSBarry Smith { 2875b6490206SBarry Smith Mat_SeqBAIJ *a; 28762593348eSBarry Smith Mat B; 28776849ba73SBarry Smith PetscErrorCode ierr; 2878b24ad042SBarry Smith PetscInt i,nz,header[4],*rowlengths=0,M,N,bs=1; 2879c1ac3661SBarry Smith PetscInt *mask,mbs,*jj,j,rowcount,nzcount,k,*browlengths,maskcount; 2880c1ac3661SBarry Smith PetscInt kmax,jcount,block,idx,point,nzcountb,extra_rows; 2881c1ac3661SBarry Smith PetscInt *masked,nmask,tmp,bs2,ishift; 2882b24ad042SBarry Smith PetscMPIInt size; 2883b24ad042SBarry Smith int fd; 288487828ca2SBarry Smith PetscScalar *aa; 288519bcc07fSBarry Smith MPI_Comm comm = ((PetscObject)viewer)->comm; 28862593348eSBarry Smith 28873a40ed3dSBarry Smith PetscFunctionBegin; 28888c07d4e3SBarry Smith ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading SEQBAIJ matrix","Mat");CHKERRQ(ierr); 28898c07d4e3SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr); 28908c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 2891de6a44a3SBarry Smith bs2 = bs*bs; 2892b6490206SBarry Smith 2893d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 289429bbc08cSBarry Smith if (size > 1) SETERRQ(PETSC_ERR_ARG_WRONG,"view must have one processor"); 2895b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 28960752156aSBarry Smith ierr = PetscBinaryRead(fd,header,4,PETSC_INT);CHKERRQ(ierr); 2897552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not Mat object"); 28982593348eSBarry Smith M = header[1]; N = header[2]; nz = header[3]; 28992593348eSBarry Smith 2900d64ed03dSBarry Smith if (header[3] < 0) { 290129bbc08cSBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as SeqBAIJ"); 2902d64ed03dSBarry Smith } 2903d64ed03dSBarry Smith 290429bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 290535aab85fSBarry Smith 290635aab85fSBarry Smith /* 290735aab85fSBarry Smith This code adds extra rows to make sure the number of rows is 290835aab85fSBarry Smith divisible by the blocksize 290935aab85fSBarry Smith */ 2910b6490206SBarry Smith mbs = M/bs; 291135aab85fSBarry Smith extra_rows = bs - M + bs*(mbs); 291235aab85fSBarry Smith if (extra_rows == bs) extra_rows = 0; 291335aab85fSBarry Smith else mbs++; 291435aab85fSBarry Smith if (extra_rows) { 29151e2582c4SBarry Smith ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 291635aab85fSBarry Smith } 2917b6490206SBarry Smith 29182593348eSBarry Smith /* read in row lengths */ 2919c1ac3661SBarry Smith ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 29200752156aSBarry Smith ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 292135aab85fSBarry Smith for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 29222593348eSBarry Smith 2923b6490206SBarry Smith /* read in column indices */ 2924c1ac3661SBarry Smith ierr = PetscMalloc((nz+extra_rows)*sizeof(PetscInt),&jj);CHKERRQ(ierr); 29250752156aSBarry Smith ierr = PetscBinaryRead(fd,jj,nz,PETSC_INT);CHKERRQ(ierr); 292635aab85fSBarry Smith for (i=0; i<extra_rows; i++) jj[nz+i] = M+i; 2927b6490206SBarry Smith 2928b6490206SBarry Smith /* loop over row lengths determining block row lengths */ 2929c1ac3661SBarry Smith ierr = PetscMalloc(mbs*sizeof(PetscInt),&browlengths);CHKERRQ(ierr); 2930c1ac3661SBarry Smith ierr = PetscMemzero(browlengths,mbs*sizeof(PetscInt));CHKERRQ(ierr); 2931c1ac3661SBarry Smith ierr = PetscMalloc(2*mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr); 2932c1ac3661SBarry Smith ierr = PetscMemzero(mask,mbs*sizeof(PetscInt));CHKERRQ(ierr); 293335aab85fSBarry Smith masked = mask + mbs; 2934b6490206SBarry Smith rowcount = 0; nzcount = 0; 2935b6490206SBarry Smith for (i=0; i<mbs; i++) { 293635aab85fSBarry Smith nmask = 0; 2937b6490206SBarry Smith for (j=0; j<bs; j++) { 2938b6490206SBarry Smith kmax = rowlengths[rowcount]; 2939b6490206SBarry Smith for (k=0; k<kmax; k++) { 294035aab85fSBarry Smith tmp = jj[nzcount++]/bs; 294135aab85fSBarry Smith if (!mask[tmp]) {masked[nmask++] = tmp; mask[tmp] = 1;} 2942b6490206SBarry Smith } 2943b6490206SBarry Smith rowcount++; 2944b6490206SBarry Smith } 294535aab85fSBarry Smith browlengths[i] += nmask; 294635aab85fSBarry Smith /* zero out the mask elements we set */ 294735aab85fSBarry Smith for (j=0; j<nmask; j++) mask[masked[j]] = 0; 2948b6490206SBarry Smith } 2949b6490206SBarry Smith 29502593348eSBarry Smith /* create our matrix */ 2951f69a0ea3SMatthew Knepley ierr = MatCreate(comm,&B); 2952f69a0ea3SMatthew Knepley ierr = MatSetSizes(B,PETSC_DECIDE,PETSC_DECIDE,M+extra_rows,N+extra_rows); 295378ae41b4SKris Buschelman ierr = MatSetType(B,type);CHKERRQ(ierr); 2954ab93d7beSBarry Smith ierr = MatSeqBAIJSetPreallocation_SeqBAIJ(B,bs,0,browlengths);CHKERRQ(ierr); 2955b6490206SBarry Smith a = (Mat_SeqBAIJ*)B->data; 29562593348eSBarry Smith 29572593348eSBarry Smith /* set matrix "i" values */ 2958de6a44a3SBarry Smith a->i[0] = 0; 2959b6490206SBarry Smith for (i=1; i<= mbs; i++) { 2960b6490206SBarry Smith a->i[i] = a->i[i-1] + browlengths[i-1]; 2961b6490206SBarry Smith a->ilen[i-1] = browlengths[i-1]; 29622593348eSBarry Smith } 2963b6490206SBarry Smith a->nz = 0; 2964b6490206SBarry Smith for (i=0; i<mbs; i++) a->nz += browlengths[i]; 29652593348eSBarry Smith 2966b6490206SBarry Smith /* read in nonzero values */ 296787828ca2SBarry Smith ierr = PetscMalloc((nz+extra_rows)*sizeof(PetscScalar),&aa);CHKERRQ(ierr); 29680752156aSBarry Smith ierr = PetscBinaryRead(fd,aa,nz,PETSC_SCALAR);CHKERRQ(ierr); 296935aab85fSBarry Smith for (i=0; i<extra_rows; i++) aa[nz+i] = 1.0; 2970b6490206SBarry Smith 2971b6490206SBarry Smith /* set "a" and "j" values into matrix */ 2972b6490206SBarry Smith nzcount = 0; jcount = 0; 2973b6490206SBarry Smith for (i=0; i<mbs; i++) { 2974b6490206SBarry Smith nzcountb = nzcount; 297535aab85fSBarry Smith nmask = 0; 2976b6490206SBarry Smith for (j=0; j<bs; j++) { 2977b6490206SBarry Smith kmax = rowlengths[i*bs+j]; 2978b6490206SBarry Smith for (k=0; k<kmax; k++) { 297935aab85fSBarry Smith tmp = jj[nzcount++]/bs; 298035aab85fSBarry Smith if (!mask[tmp]) { masked[nmask++] = tmp; mask[tmp] = 1;} 2981b6490206SBarry Smith } 2982b6490206SBarry Smith } 2983de6a44a3SBarry Smith /* sort the masked values */ 2984433994e6SBarry Smith ierr = PetscSortInt(nmask,masked);CHKERRQ(ierr); 2985de6a44a3SBarry Smith 2986b6490206SBarry Smith /* set "j" values into matrix */ 2987b6490206SBarry Smith maskcount = 1; 298835aab85fSBarry Smith for (j=0; j<nmask; j++) { 298935aab85fSBarry Smith a->j[jcount++] = masked[j]; 2990de6a44a3SBarry Smith mask[masked[j]] = maskcount++; 2991b6490206SBarry Smith } 2992b6490206SBarry Smith /* set "a" values into matrix */ 2993de6a44a3SBarry Smith ishift = bs2*a->i[i]; 2994b6490206SBarry Smith for (j=0; j<bs; j++) { 2995b6490206SBarry Smith kmax = rowlengths[i*bs+j]; 2996b6490206SBarry Smith for (k=0; k<kmax; k++) { 2997de6a44a3SBarry Smith tmp = jj[nzcountb]/bs ; 2998de6a44a3SBarry Smith block = mask[tmp] - 1; 2999de6a44a3SBarry Smith point = jj[nzcountb] - bs*tmp; 3000de6a44a3SBarry Smith idx = ishift + bs2*block + j + bs*point; 3001375fe846SBarry Smith a->a[idx] = (MatScalar)aa[nzcountb++]; 3002b6490206SBarry Smith } 3003b6490206SBarry Smith } 300435aab85fSBarry Smith /* zero out the mask elements we set */ 300535aab85fSBarry Smith for (j=0; j<nmask; j++) mask[masked[j]] = 0; 3006b6490206SBarry Smith } 300729bbc08cSBarry Smith if (jcount != a->nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Bad binary matrix"); 3008b6490206SBarry Smith 3009606d414cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 3010606d414cSSatish Balay ierr = PetscFree(browlengths);CHKERRQ(ierr); 3011606d414cSSatish Balay ierr = PetscFree(aa);CHKERRQ(ierr); 3012606d414cSSatish Balay ierr = PetscFree(jj);CHKERRQ(ierr); 3013606d414cSSatish Balay ierr = PetscFree(mask);CHKERRQ(ierr); 3014b6490206SBarry Smith 301578ae41b4SKris Buschelman ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 301678ae41b4SKris Buschelman ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 30179c01be13SBarry Smith ierr = MatView_Private(B);CHKERRQ(ierr); 301878ae41b4SKris Buschelman 301978ae41b4SKris Buschelman *A = B; 30203a40ed3dSBarry Smith PetscFunctionReturn(0); 30212593348eSBarry Smith } 30222593348eSBarry Smith 30234a2ae208SSatish Balay #undef __FUNCT__ 30244a2ae208SSatish Balay #define __FUNCT__ "MatCreateSeqBAIJ" 3025273d9f13SBarry Smith /*@C 3026273d9f13SBarry Smith MatCreateSeqBAIJ - Creates a sparse matrix in block AIJ (block 3027273d9f13SBarry Smith compressed row) format. For good matrix assembly performance the 3028273d9f13SBarry Smith user should preallocate the matrix storage by setting the parameter nz 3029273d9f13SBarry Smith (or the array nnz). By setting these parameters accurately, performance 3030273d9f13SBarry Smith during matrix assembly can be increased by more than a factor of 50. 30312593348eSBarry Smith 3032273d9f13SBarry Smith Collective on MPI_Comm 3033273d9f13SBarry Smith 3034273d9f13SBarry Smith Input Parameters: 3035273d9f13SBarry Smith + comm - MPI communicator, set to PETSC_COMM_SELF 3036273d9f13SBarry Smith . bs - size of block 3037273d9f13SBarry Smith . m - number of rows 3038273d9f13SBarry Smith . n - number of columns 303935d8aa7fSBarry Smith . nz - number of nonzero blocks per block row (same for all rows) 304035d8aa7fSBarry Smith - nnz - array containing the number of nonzero blocks in the various block rows 3041273d9f13SBarry Smith (possibly different for each block row) or PETSC_NULL 3042273d9f13SBarry Smith 3043273d9f13SBarry Smith Output Parameter: 3044273d9f13SBarry Smith . A - the matrix 3045273d9f13SBarry Smith 3046175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 3047175b88e8SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. This is definitely 3048175b88e8SBarry Smith true if you plan to use the external direct solvers such as SuperLU, MUMPS or Spooles. 3049175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 3050175b88e8SBarry Smith 3051273d9f13SBarry Smith Options Database Keys: 3052273d9f13SBarry Smith . -mat_no_unroll - uses code that does not unroll the loops in the 3053273d9f13SBarry Smith block calculations (much slower) 3054273d9f13SBarry Smith . -mat_block_size - size of the blocks to use 3055273d9f13SBarry Smith 3056273d9f13SBarry Smith Level: intermediate 3057273d9f13SBarry Smith 3058273d9f13SBarry Smith Notes: 3059d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 3060d1be2dadSMatthew Knepley 306149a6f317SBarry Smith If the nnz parameter is given then the nz parameter is ignored 306249a6f317SBarry Smith 306335d8aa7fSBarry Smith A nonzero block is any block that as 1 or more nonzeros in it 306435d8aa7fSBarry Smith 3065273d9f13SBarry Smith The block AIJ format is fully compatible with standard Fortran 77 3066273d9f13SBarry Smith storage. That is, the stored row and column indices can begin at 3067273d9f13SBarry Smith either one (as in Fortran) or zero. See the users' manual for details. 3068273d9f13SBarry Smith 3069273d9f13SBarry Smith Specify the preallocated storage with either nz or nnz (not both). 3070273d9f13SBarry Smith Set nz=PETSC_DEFAULT and nnz=PETSC_NULL for PETSc to control dynamic memory 3071273d9f13SBarry Smith allocation. For additional details, see the users manual chapter on 3072273d9f13SBarry Smith matrices. 3073273d9f13SBarry Smith 3074273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatCreateMPIBAIJ() 3075273d9f13SBarry Smith @*/ 3076be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateSeqBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt nz,const PetscInt nnz[],Mat *A) 3077273d9f13SBarry Smith { 3078dfbe8321SBarry Smith PetscErrorCode ierr; 3079273d9f13SBarry Smith 3080273d9f13SBarry Smith PetscFunctionBegin; 3081f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 3082f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,m,n);CHKERRQ(ierr); 3083273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr); 3084ab93d7beSBarry Smith ierr = MatSeqBAIJSetPreallocation_SeqBAIJ(*A,bs,nz,(PetscInt*)nnz);CHKERRQ(ierr); 3085273d9f13SBarry Smith PetscFunctionReturn(0); 3086273d9f13SBarry Smith } 3087273d9f13SBarry Smith 30884a2ae208SSatish Balay #undef __FUNCT__ 30894a2ae208SSatish Balay #define __FUNCT__ "MatSeqBAIJSetPreallocation" 3090273d9f13SBarry Smith /*@C 3091273d9f13SBarry Smith MatSeqBAIJSetPreallocation - Sets the block size and expected nonzeros 3092273d9f13SBarry Smith per row in the matrix. For good matrix assembly performance the 3093273d9f13SBarry Smith user should preallocate the matrix storage by setting the parameter nz 3094273d9f13SBarry Smith (or the array nnz). By setting these parameters accurately, performance 3095273d9f13SBarry Smith during matrix assembly can be increased by more than a factor of 50. 3096273d9f13SBarry Smith 3097273d9f13SBarry Smith Collective on MPI_Comm 3098273d9f13SBarry Smith 3099273d9f13SBarry Smith Input Parameters: 3100273d9f13SBarry Smith + A - the matrix 3101273d9f13SBarry Smith . bs - size of block 3102273d9f13SBarry Smith . nz - number of block nonzeros per block row (same for all rows) 3103273d9f13SBarry Smith - nnz - array containing the number of block nonzeros in the various block rows 3104273d9f13SBarry Smith (possibly different for each block row) or PETSC_NULL 3105273d9f13SBarry Smith 3106273d9f13SBarry Smith Options Database Keys: 3107273d9f13SBarry Smith . -mat_no_unroll - uses code that does not unroll the loops in the 3108273d9f13SBarry Smith block calculations (much slower) 3109273d9f13SBarry Smith . -mat_block_size - size of the blocks to use 3110273d9f13SBarry Smith 3111273d9f13SBarry Smith Level: intermediate 3112273d9f13SBarry Smith 3113273d9f13SBarry Smith Notes: 311449a6f317SBarry Smith If the nnz parameter is given then the nz parameter is ignored 311549a6f317SBarry Smith 3116aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 3117aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 3118aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 3119aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 3120aa95bbe8SBarry Smith 3121273d9f13SBarry Smith The block AIJ format is fully compatible with standard Fortran 77 3122273d9f13SBarry Smith storage. That is, the stored row and column indices can begin at 3123273d9f13SBarry Smith either one (as in Fortran) or zero. See the users' manual for details. 3124273d9f13SBarry Smith 3125273d9f13SBarry Smith Specify the preallocated storage with either nz or nnz (not both). 3126273d9f13SBarry Smith Set nz=PETSC_DEFAULT and nnz=PETSC_NULL for PETSc to control dynamic memory 3127273d9f13SBarry Smith allocation. For additional details, see the users manual chapter on 3128273d9f13SBarry Smith matrices. 3129273d9f13SBarry Smith 3130aa95bbe8SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatGetInfo() 3131273d9f13SBarry Smith @*/ 3132be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt nz,const PetscInt nnz[]) 3133273d9f13SBarry Smith { 3134c1ac3661SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[]); 3135273d9f13SBarry Smith 3136273d9f13SBarry Smith PetscFunctionBegin; 3137a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatSeqBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 3138a23d5eceSKris Buschelman if (f) { 3139a23d5eceSKris Buschelman ierr = (*f)(B,bs,nz,nnz);CHKERRQ(ierr); 3140273d9f13SBarry Smith } 3141273d9f13SBarry Smith PetscFunctionReturn(0); 3142273d9f13SBarry Smith } 3143a1d92eedSBarry Smith 3144c75a6043SHong Zhang #undef __FUNCT__ 3145c75a6043SHong Zhang #define __FUNCT__ "MatCreateSeqBAIJWithArrays" 3146c75a6043SHong Zhang /*@ 3147c75a6043SHong Zhang MatCreateSeqBAIJWithArrays - Creates an sequential BAIJ matrix using matrix elements 3148c75a6043SHong Zhang (upper triangular entries in CSR format) provided by the user. 3149c75a6043SHong Zhang 3150c75a6043SHong Zhang Collective on MPI_Comm 3151c75a6043SHong Zhang 3152c75a6043SHong Zhang Input Parameters: 3153c75a6043SHong Zhang + comm - must be an MPI communicator of size 1 3154c75a6043SHong Zhang . bs - size of block 3155c75a6043SHong Zhang . m - number of rows 3156c75a6043SHong Zhang . n - number of columns 3157c75a6043SHong Zhang . i - row indices 3158c75a6043SHong Zhang . j - column indices 3159c75a6043SHong Zhang - a - matrix values 3160c75a6043SHong Zhang 3161c75a6043SHong Zhang Output Parameter: 3162c75a6043SHong Zhang . mat - the matrix 3163c75a6043SHong Zhang 3164c75a6043SHong Zhang Level: intermediate 3165c75a6043SHong Zhang 3166c75a6043SHong Zhang Notes: 3167c75a6043SHong Zhang The i, j, and a arrays are not copied by this routine, the user must free these arrays 3168c75a6043SHong Zhang once the matrix is destroyed 3169c75a6043SHong Zhang 3170c75a6043SHong Zhang You cannot set new nonzero locations into this matrix, that will generate an error. 3171c75a6043SHong Zhang 3172c75a6043SHong Zhang The i and j indices are 0 based 3173c75a6043SHong Zhang 3174c75a6043SHong Zhang .seealso: MatCreate(), MatCreateMPIBAIJ(), MatCreateSeqBAIJ() 3175c75a6043SHong Zhang 3176c75a6043SHong Zhang @*/ 3177c75a6043SHong Zhang PetscErrorCode PETSCMAT_DLLEXPORT MatCreateSeqBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt* i,PetscInt*j,PetscScalar *a,Mat *mat) 3178c75a6043SHong Zhang { 3179c75a6043SHong Zhang PetscErrorCode ierr; 3180c75a6043SHong Zhang PetscInt ii; 3181c75a6043SHong Zhang Mat_SeqBAIJ *baij; 3182c75a6043SHong Zhang 3183c75a6043SHong Zhang PetscFunctionBegin; 3184c75a6043SHong Zhang if (bs != 1) SETERRQ1(PETSC_ERR_SUP,"block size %D > 1 is not supported yet",bs); 3185c75a6043SHong Zhang if (i[0]) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0"); 3186c75a6043SHong Zhang 3187c75a6043SHong Zhang ierr = MatCreate(comm,mat);CHKERRQ(ierr); 3188c75a6043SHong Zhang ierr = MatSetSizes(*mat,m,n,m,n);CHKERRQ(ierr); 3189c75a6043SHong Zhang ierr = MatSetType(*mat,MATSEQBAIJ);CHKERRQ(ierr); 3190c75a6043SHong Zhang ierr = MatSeqBAIJSetPreallocation_SeqBAIJ(*mat,bs,MAT_SKIP_ALLOCATION,0);CHKERRQ(ierr); 3191c75a6043SHong Zhang baij = (Mat_SeqBAIJ*)(*mat)->data; 3192c75a6043SHong Zhang ierr = PetscMalloc2(m,PetscInt,&baij->imax,m,PetscInt,&baij->ilen);CHKERRQ(ierr); 3193c75a6043SHong Zhang 3194c75a6043SHong Zhang baij->i = i; 3195c75a6043SHong Zhang baij->j = j; 3196c75a6043SHong Zhang baij->a = a; 3197c75a6043SHong Zhang baij->singlemalloc = PETSC_FALSE; 3198c75a6043SHong Zhang baij->nonew = -1; /*this indicates that inserting a new value in the matrix that generates a new nonzero is an error*/ 3199e6b907acSBarry Smith baij->free_a = PETSC_FALSE; 3200e6b907acSBarry Smith baij->free_ij = PETSC_FALSE; 3201c75a6043SHong Zhang 3202c75a6043SHong Zhang for (ii=0; ii<m; ii++) { 3203c75a6043SHong Zhang baij->ilen[ii] = baij->imax[ii] = i[ii+1] - i[ii]; 3204c75a6043SHong Zhang #if defined(PETSC_USE_DEBUG) 3205c75a6043SHong Zhang if (i[ii+1] - i[ii] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Negative row length in i (row indices) row = %d length = %d",ii,i[ii+1] - i[ii]); 3206c75a6043SHong Zhang #endif 3207c75a6043SHong Zhang } 3208c75a6043SHong Zhang #if defined(PETSC_USE_DEBUG) 3209c75a6043SHong Zhang for (ii=0; ii<baij->i[m]; ii++) { 3210c75a6043SHong Zhang if (j[ii] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Negative column index at location = %d index = %d",ii,j[ii]); 3211c75a6043SHong Zhang if (j[ii] > n - 1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column index to large at location = %d index = %d",ii,j[ii]); 3212c75a6043SHong Zhang } 3213c75a6043SHong Zhang #endif 3214c75a6043SHong Zhang 3215c75a6043SHong Zhang ierr = MatAssemblyBegin(*mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 3216c75a6043SHong Zhang ierr = MatAssemblyEnd(*mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 3217c75a6043SHong Zhang PetscFunctionReturn(0); 3218c75a6043SHong Zhang } 3219