xref: /petsc/src/mat/impls/baij/seq/baij.c (revision eed8681046e740876c451765b135de56ba78c790)
12593348eSBarry Smith #ifndef lint
2*eed86810SBarry Smith static char vcid[] = "$Id: baij.c,v 1.103 1997/06/03 20:26:37 balay Exp bsmith $";
32593348eSBarry Smith #endif
42593348eSBarry Smith 
52593348eSBarry Smith /*
6b6490206SBarry Smith     Defines the basic matrix operations for the BAIJ (compressed row)
72593348eSBarry Smith   matrix storage format.
82593348eSBarry Smith */
93369ce9aSBarry Smith 
103369ce9aSBarry Smith #include "pinclude/pviewer.h"
113369ce9aSBarry Smith #include "sys.h"
1270f55243SBarry Smith #include "src/mat/impls/baij/seq/baij.h"
131a6a6d98SBarry Smith #include "src/vec/vecimpl.h"
141a6a6d98SBarry Smith #include "src/inline/spops.h"
152593348eSBarry Smith #include "petsc.h"
163b547af2SSatish Balay 
172593348eSBarry Smith 
18de6a44a3SBarry Smith /*
19de6a44a3SBarry Smith      Adds diagonal pointers to sparse matrix structure.
20de6a44a3SBarry Smith */
21de6a44a3SBarry Smith 
225615d1e5SSatish Balay #undef __FUNC__
235615d1e5SSatish Balay #define __FUNC__ "MatMarkDiag_SeqBAIJ"
24de6a44a3SBarry Smith int MatMarkDiag_SeqBAIJ(Mat A)
25de6a44a3SBarry Smith {
26de6a44a3SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
277fc0212eSBarry Smith   int         i,j, *diag, m = a->mbs;
28de6a44a3SBarry Smith 
29de6a44a3SBarry Smith   diag = (int *) PetscMalloc( (m+1)*sizeof(int)); CHKPTRQ(diag);
30de6a44a3SBarry Smith   PLogObjectMemory(A,(m+1)*sizeof(int));
317fc0212eSBarry Smith   for ( i=0; i<m; i++ ) {
32de6a44a3SBarry Smith     for ( j=a->i[i]; j<a->i[i+1]; j++ ) {
33de6a44a3SBarry Smith       if (a->j[j] == i) {
34de6a44a3SBarry Smith         diag[i] = j;
35de6a44a3SBarry Smith         break;
36de6a44a3SBarry Smith       }
37de6a44a3SBarry Smith     }
38de6a44a3SBarry Smith   }
39de6a44a3SBarry Smith   a->diag = diag;
40de6a44a3SBarry Smith   return 0;
41de6a44a3SBarry Smith }
422593348eSBarry Smith 
432593348eSBarry Smith 
443b2fbd54SBarry Smith extern int MatToSymmetricIJ_SeqAIJ(int,int*,int*,int,int,int**,int**);
453b2fbd54SBarry Smith 
465615d1e5SSatish Balay #undef __FUNC__
475615d1e5SSatish Balay #define __FUNC__ "MatGetRowIJ_SeqBAIJ"
483b2fbd54SBarry Smith static int MatGetRowIJ_SeqBAIJ(Mat A,int oshift,PetscTruth symmetric,int *nn,int **ia,int **ja,
493b2fbd54SBarry Smith                             PetscTruth *done)
503b2fbd54SBarry Smith {
513b2fbd54SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
523b2fbd54SBarry Smith   int         ierr, n = a->mbs,i;
533b2fbd54SBarry Smith 
543b2fbd54SBarry Smith   *nn = n;
553b2fbd54SBarry Smith   if (!ia) return 0;
563b2fbd54SBarry Smith   if (symmetric) {
573b2fbd54SBarry Smith     ierr = MatToSymmetricIJ_SeqAIJ(n,a->i,a->j,0,oshift,ia,ja);CHKERRQ(ierr);
583b2fbd54SBarry Smith   } else if (oshift == 1) {
593b2fbd54SBarry Smith     /* temporarily add 1 to i and j indices */
603b2fbd54SBarry Smith     int nz = a->i[n] + 1;
613b2fbd54SBarry Smith     for ( i=0; i<nz; i++ ) a->j[i]++;
623b2fbd54SBarry Smith     for ( i=0; i<n+1; i++ ) a->i[i]++;
633b2fbd54SBarry Smith     *ia = a->i; *ja = a->j;
643b2fbd54SBarry Smith   } else {
653b2fbd54SBarry Smith     *ia = a->i; *ja = a->j;
663b2fbd54SBarry Smith   }
673b2fbd54SBarry Smith 
683b2fbd54SBarry Smith   return 0;
693b2fbd54SBarry Smith }
703b2fbd54SBarry Smith 
715615d1e5SSatish Balay #undef __FUNC__
725eea60f9SBarry Smith #define __FUNC__ "MatRestoreRowIJ_SeqBAIJ" /* ADIC Ignore */
733b2fbd54SBarry Smith static int MatRestoreRowIJ_SeqBAIJ(Mat A,int oshift,PetscTruth symmetric,int *nn,int **ia,int **ja,
743b2fbd54SBarry Smith                                 PetscTruth *done)
753b2fbd54SBarry Smith {
763b2fbd54SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
773b2fbd54SBarry Smith   int         i,n = a->mbs;
783b2fbd54SBarry Smith 
793b2fbd54SBarry Smith   if (!ia) return 0;
803b2fbd54SBarry Smith   if (symmetric) {
813b2fbd54SBarry Smith     PetscFree(*ia);
823b2fbd54SBarry Smith     PetscFree(*ja);
83af5da2bfSBarry Smith   } else if (oshift == 1) {
843b2fbd54SBarry Smith     int nz = a->i[n];
853b2fbd54SBarry Smith     for ( i=0; i<nz; i++ ) a->j[i]--;
863b2fbd54SBarry Smith     for ( i=0; i<n+1; i++ ) a->i[i]--;
873b2fbd54SBarry Smith   }
883b2fbd54SBarry Smith   return 0;
893b2fbd54SBarry Smith }
903b2fbd54SBarry Smith 
913b2fbd54SBarry Smith 
925615d1e5SSatish Balay #undef __FUNC__
935eea60f9SBarry Smith #define __FUNC__ "MatView_SeqBAIJ_Binary" /* ADIC Ignore */
94b6490206SBarry Smith static int MatView_SeqBAIJ_Binary(Mat A,Viewer viewer)
952593348eSBarry Smith {
96b6490206SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
979df24120SSatish Balay   int         i, fd, *col_lens, ierr, bs = a->bs,count,*jj,j,k,l,bs2=a->bs2;
98b6490206SBarry Smith   Scalar      *aa;
992593348eSBarry Smith 
10090ace30eSBarry Smith   ierr = ViewerBinaryGetDescriptor(viewer,&fd); CHKERRQ(ierr);
1012593348eSBarry Smith   col_lens = (int *) PetscMalloc((4+a->m)*sizeof(int));CHKPTRQ(col_lens);
1022593348eSBarry Smith   col_lens[0] = MAT_COOKIE;
1033b2fbd54SBarry Smith 
1042593348eSBarry Smith   col_lens[1] = a->m;
1052593348eSBarry Smith   col_lens[2] = a->n;
1067e67e3f9SSatish Balay   col_lens[3] = a->nz*bs2;
1072593348eSBarry Smith 
1082593348eSBarry Smith   /* store lengths of each row and write (including header) to file */
109b6490206SBarry Smith   count = 0;
110b6490206SBarry Smith   for ( i=0; i<a->mbs; i++ ) {
111b6490206SBarry Smith     for ( j=0; j<bs; j++ ) {
112b6490206SBarry Smith       col_lens[4+count++] = bs*(a->i[i+1] - a->i[i]);
113b6490206SBarry Smith     }
1142593348eSBarry Smith   }
11577c4ece6SBarry Smith   ierr = PetscBinaryWrite(fd,col_lens,4+a->m,BINARY_INT,1); CHKERRQ(ierr);
1162593348eSBarry Smith   PetscFree(col_lens);
1172593348eSBarry Smith 
1182593348eSBarry Smith   /* store column indices (zero start index) */
11966963ce1SSatish Balay   jj = (int *) PetscMalloc( (a->nz+1)*bs2*sizeof(int) ); CHKPTRQ(jj);
120b6490206SBarry Smith   count = 0;
121b6490206SBarry Smith   for ( i=0; i<a->mbs; i++ ) {
122b6490206SBarry Smith     for ( j=0; j<bs; j++ ) {
123b6490206SBarry Smith       for ( k=a->i[i]; k<a->i[i+1]; k++ ) {
124b6490206SBarry Smith         for ( l=0; l<bs; l++ ) {
125b6490206SBarry Smith           jj[count++] = bs*a->j[k] + l;
1262593348eSBarry Smith         }
1272593348eSBarry Smith       }
128b6490206SBarry Smith     }
129b6490206SBarry Smith   }
1307e67e3f9SSatish Balay   ierr = PetscBinaryWrite(fd,jj,bs2*a->nz,BINARY_INT,0); CHKERRQ(ierr);
131b6490206SBarry Smith   PetscFree(jj);
1322593348eSBarry Smith 
1332593348eSBarry Smith   /* store nonzero values */
13466963ce1SSatish Balay   aa = (Scalar *) PetscMalloc((a->nz+1)*bs2*sizeof(Scalar)); CHKPTRQ(aa);
135b6490206SBarry Smith   count = 0;
136b6490206SBarry Smith   for ( i=0; i<a->mbs; i++ ) {
137b6490206SBarry Smith     for ( j=0; j<bs; j++ ) {
138b6490206SBarry Smith       for ( k=a->i[i]; k<a->i[i+1]; k++ ) {
139b6490206SBarry Smith         for ( l=0; l<bs; l++ ) {
1407e67e3f9SSatish Balay           aa[count++] = a->a[bs2*k + l*bs + j];
141b6490206SBarry Smith         }
142b6490206SBarry Smith       }
143b6490206SBarry Smith     }
144b6490206SBarry Smith   }
1457e67e3f9SSatish Balay   ierr = PetscBinaryWrite(fd,aa,bs2*a->nz,BINARY_SCALAR,0); CHKERRQ(ierr);
146b6490206SBarry Smith   PetscFree(aa);
1472593348eSBarry Smith   return 0;
1482593348eSBarry Smith }
1492593348eSBarry Smith 
1505615d1e5SSatish Balay #undef __FUNC__
1515eea60f9SBarry Smith #define __FUNC__ "MatView_SeqBAIJ_ASCII" /* ADIC Ignore */
152b6490206SBarry Smith static int MatView_SeqBAIJ_ASCII(Mat A,Viewer viewer)
1532593348eSBarry Smith {
154b6490206SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
1559df24120SSatish Balay   int         ierr, i,j,format,bs = a->bs,k,l,bs2=a->bs2;
1562593348eSBarry Smith   FILE        *fd;
1572593348eSBarry Smith   char        *outputname;
1582593348eSBarry Smith 
15990ace30eSBarry Smith   ierr = ViewerASCIIGetPointer(viewer,&fd); CHKERRQ(ierr);
1602593348eSBarry Smith   ierr = ViewerFileGetOutputname_Private(viewer,&outputname);CHKERRQ(ierr);
16190ace30eSBarry Smith   ierr = ViewerGetFormat(viewer,&format);
162639f9d9dSBarry Smith   if (format == VIEWER_FORMAT_ASCII_INFO || format == VIEWER_FORMAT_ASCII_INFO_LONG) {
1637ddc982cSLois Curfman McInnes     fprintf(fd,"  block size is %d\n",bs);
1642593348eSBarry Smith   }
165639f9d9dSBarry Smith   else if (format == VIEWER_FORMAT_ASCII_MATLAB) {
166e3372554SBarry Smith     SETERRQ(1,0,"Matlab format not supported");
1672593348eSBarry Smith   }
168639f9d9dSBarry Smith   else if (format == VIEWER_FORMAT_ASCII_COMMON) {
16944cd7ae7SLois Curfman McInnes     for ( i=0; i<a->mbs; i++ ) {
17044cd7ae7SLois Curfman McInnes       for ( j=0; j<bs; j++ ) {
17144cd7ae7SLois Curfman McInnes         fprintf(fd,"row %d:",i*bs+j);
17244cd7ae7SLois Curfman McInnes         for ( k=a->i[i]; k<a->i[i+1]; k++ ) {
17344cd7ae7SLois Curfman McInnes           for ( l=0; l<bs; l++ ) {
17444cd7ae7SLois Curfman McInnes #if defined(PETSC_COMPLEX)
17544cd7ae7SLois Curfman McInnes           if (imag(a->a[bs2*k + l*bs + j]) != 0.0 && real(a->a[bs2*k + l*bs + j]) != 0.0)
17644cd7ae7SLois Curfman McInnes             fprintf(fd," %d %g + %g i",bs*a->j[k]+l,
17744cd7ae7SLois Curfman McInnes               real(a->a[bs2*k + l*bs + j]),imag(a->a[bs2*k + l*bs + j]));
17844cd7ae7SLois Curfman McInnes           else if (real(a->a[bs2*k + l*bs + j]) != 0.0)
17944cd7ae7SLois Curfman McInnes             fprintf(fd," %d %g ",bs*a->j[k]+l,real(a->a[bs2*k + l*bs + j]));
18044cd7ae7SLois Curfman McInnes #else
18144cd7ae7SLois Curfman McInnes           if (a->a[bs2*k + l*bs + j] != 0.0)
18244cd7ae7SLois Curfman McInnes             fprintf(fd," %d %g ",bs*a->j[k]+l,a->a[bs2*k + l*bs + j]);
18344cd7ae7SLois Curfman McInnes #endif
18444cd7ae7SLois Curfman McInnes           }
18544cd7ae7SLois Curfman McInnes         }
18644cd7ae7SLois Curfman McInnes         fprintf(fd,"\n");
18744cd7ae7SLois Curfman McInnes       }
18844cd7ae7SLois Curfman McInnes     }
18944cd7ae7SLois Curfman McInnes   }
1902593348eSBarry Smith   else {
191b6490206SBarry Smith     for ( i=0; i<a->mbs; i++ ) {
192b6490206SBarry Smith       for ( j=0; j<bs; j++ ) {
193b6490206SBarry Smith         fprintf(fd,"row %d:",i*bs+j);
194b6490206SBarry Smith         for ( k=a->i[i]; k<a->i[i+1]; k++ ) {
195b6490206SBarry Smith           for ( l=0; l<bs; l++ ) {
19688685aaeSLois Curfman McInnes #if defined(PETSC_COMPLEX)
1977e67e3f9SSatish Balay           if (imag(a->a[bs2*k + l*bs + j]) != 0.0) {
19888685aaeSLois Curfman McInnes             fprintf(fd," %d %g + %g i",bs*a->j[k]+l,
1997e67e3f9SSatish Balay               real(a->a[bs2*k + l*bs + j]),imag(a->a[bs2*k + l*bs + j]));
20088685aaeSLois Curfman McInnes           }
20188685aaeSLois Curfman McInnes           else {
2027e67e3f9SSatish Balay             fprintf(fd," %d %g ",bs*a->j[k]+l,real(a->a[bs2*k + l*bs + j]));
20388685aaeSLois Curfman McInnes           }
20488685aaeSLois Curfman McInnes #else
2057e67e3f9SSatish Balay             fprintf(fd," %d %g ",bs*a->j[k]+l,a->a[bs2*k + l*bs + j]);
20688685aaeSLois Curfman McInnes #endif
2072593348eSBarry Smith           }
2082593348eSBarry Smith         }
2092593348eSBarry Smith         fprintf(fd,"\n");
2102593348eSBarry Smith       }
2112593348eSBarry Smith     }
212b6490206SBarry Smith   }
2132593348eSBarry Smith   fflush(fd);
2142593348eSBarry Smith   return 0;
2152593348eSBarry Smith }
2162593348eSBarry Smith 
2175615d1e5SSatish Balay #undef __FUNC__
2185eea60f9SBarry Smith #define __FUNC__ "MatView_SeqBAIJ_Draw" /* ADIC Ignore */
2193270192aSSatish Balay static int MatView_SeqBAIJ_Draw(Mat A,Viewer viewer)
2203270192aSSatish Balay {
2213270192aSSatish Balay   Mat_SeqBAIJ  *a=(Mat_SeqBAIJ *) A->data;
2223270192aSSatish Balay   int          row,ierr,i,j,k,l,mbs=a->mbs,pause,color,bs=a->bs,bs2=a->bs2;
2233270192aSSatish Balay   double       xl,yl,xr,yr,w,h,xc,yc,scale = 1.0,x_l,x_r,y_l,y_r;
2243270192aSSatish Balay   Scalar       *aa;
2253270192aSSatish Balay   Draw         draw;
2263270192aSSatish Balay   DrawButton   button;
2273270192aSSatish Balay   PetscTruth   isnull;
2283270192aSSatish Balay 
2293270192aSSatish Balay   ViewerDrawGetDraw(viewer,&draw);
2303270192aSSatish Balay   ierr = DrawIsNull(draw,&isnull); CHKERRQ(ierr); if (isnull) return 0;
2313270192aSSatish Balay 
2323270192aSSatish Balay   xr  = a->n; yr = a->m; h = yr/10.0; w = xr/10.0;
2333270192aSSatish Balay   xr += w;    yr += h;  xl = -w;     yl = -h;
2343270192aSSatish Balay   ierr = DrawSetCoordinates(draw,xl,yl,xr,yr); CHKERRQ(ierr);
2353270192aSSatish Balay   /* loop over matrix elements drawing boxes */
2363270192aSSatish Balay   color = DRAW_BLUE;
2373270192aSSatish Balay   for ( i=0,row=0; i<mbs; i++,row+=bs ) {
2383270192aSSatish Balay     for ( j=a->i[i]; j<a->i[i+1]; j++ ) {
2393270192aSSatish Balay       y_l = a->m - row - 1.0; y_r = y_l + 1.0;
2403270192aSSatish Balay       x_l = a->j[j]*bs; x_r = x_l + 1.0;
2413270192aSSatish Balay       aa = a->a + j*bs2;
2423270192aSSatish Balay       for ( k=0; k<bs; k++ ) {
2433270192aSSatish Balay         for ( l=0; l<bs; l++ ) {
2443270192aSSatish Balay           if (PetscReal(*aa++) >=  0.) continue;
245b34f160eSSatish Balay           DrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);
2463270192aSSatish Balay         }
2473270192aSSatish Balay       }
2483270192aSSatish Balay     }
2493270192aSSatish Balay   }
2503270192aSSatish Balay   color = DRAW_CYAN;
2513270192aSSatish Balay   for ( i=0,row=0; i<mbs; i++,row+=bs ) {
2523270192aSSatish Balay     for ( j=a->i[i]; j<a->i[i+1]; j++ ) {
2533270192aSSatish Balay       y_l = a->m - row - 1.0; y_r = y_l + 1.0;
2543270192aSSatish Balay       x_l = a->j[j]*bs; x_r = x_l + 1.0;
2553270192aSSatish Balay       aa = a->a + j*bs2;
2563270192aSSatish Balay       for ( k=0; k<bs; k++ ) {
2573270192aSSatish Balay         for ( l=0; l<bs; l++ ) {
2583270192aSSatish Balay           if (PetscReal(*aa++) != 0.) continue;
259b34f160eSSatish Balay           DrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);
2603270192aSSatish Balay         }
2613270192aSSatish Balay       }
2623270192aSSatish Balay     }
2633270192aSSatish Balay   }
2643270192aSSatish Balay 
2653270192aSSatish Balay   color = DRAW_RED;
2663270192aSSatish Balay   for ( i=0,row=0; i<mbs; i++,row+=bs ) {
2673270192aSSatish Balay     for ( j=a->i[i]; j<a->i[i+1]; j++ ) {
2683270192aSSatish Balay       y_l = a->m - row - 1.0; y_r = y_l + 1.0;
2693270192aSSatish Balay       x_l = a->j[j]*bs; x_r = x_l + 1.0;
2703270192aSSatish Balay       aa = a->a + j*bs2;
2713270192aSSatish Balay       for ( k=0; k<bs; k++ ) {
2723270192aSSatish Balay         for ( l=0; l<bs; l++ ) {
2733270192aSSatish Balay           if (PetscReal(*aa++) <= 0.) continue;
274b34f160eSSatish Balay           DrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);
2753270192aSSatish Balay         }
2763270192aSSatish Balay       }
2773270192aSSatish Balay     }
2783270192aSSatish Balay   }
2793270192aSSatish Balay 
2803270192aSSatish Balay   DrawFlush(draw);
2813270192aSSatish Balay   DrawGetPause(draw,&pause);
2823270192aSSatish Balay   if (pause >= 0) { PetscSleep(pause); return 0;}
2833270192aSSatish Balay 
2843270192aSSatish Balay   /* allow the matrix to zoom or shrink */
2853270192aSSatish Balay   ierr = DrawGetMouseButton(draw,&button,&xc,&yc,0,0);
2863270192aSSatish Balay   while (button != BUTTON_RIGHT) {
2873270192aSSatish Balay     DrawClear(draw);
2883270192aSSatish Balay     if (button == BUTTON_LEFT) scale = .5;
2893270192aSSatish Balay     else if (button == BUTTON_CENTER) scale = 2.;
2903270192aSSatish Balay     xl = scale*(xl + w - xc) + xc - w*scale;
2913270192aSSatish Balay     xr = scale*(xr - w - xc) + xc + w*scale;
2923270192aSSatish Balay     yl = scale*(yl + h - yc) + yc - h*scale;
2933270192aSSatish Balay     yr = scale*(yr - h - yc) + yc + h*scale;
2943270192aSSatish Balay     w *= scale; h *= scale;
2953270192aSSatish Balay     ierr = DrawSetCoordinates(draw,xl,yl,xr,yr); CHKERRQ(ierr);
2963270192aSSatish Balay     color = DRAW_BLUE;
2973270192aSSatish Balay     for ( i=0,row=0; i<mbs; i++,row+=bs ) {
2983270192aSSatish Balay       for ( j=a->i[i]; j<a->i[i+1]; j++ ) {
2993270192aSSatish Balay         y_l = a->m - row - 1.0; y_r = y_l + 1.0;
3003270192aSSatish Balay         x_l = a->j[j]*bs; x_r = x_l + 1.0;
3013270192aSSatish Balay         aa = a->a + j*bs2;
3023270192aSSatish Balay         for ( k=0; k<bs; k++ ) {
3033270192aSSatish Balay           for ( l=0; l<bs; l++ ) {
3043270192aSSatish Balay             if (PetscReal(*aa++) >=  0.) continue;
305b34f160eSSatish Balay             DrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);
3063270192aSSatish Balay           }
3073270192aSSatish Balay         }
3083270192aSSatish Balay       }
3093270192aSSatish Balay     }
3103270192aSSatish Balay     color = DRAW_CYAN;
3113270192aSSatish Balay     for ( i=0,row=0; i<mbs; i++,row+=bs ) {
3123270192aSSatish Balay       for ( j=a->i[i]; j<a->i[i+1]; j++ ) {
3133270192aSSatish Balay         y_l = a->m - row - 1.0; y_r = y_l + 1.0;
3143270192aSSatish Balay         x_l = a->j[j]*bs; x_r = x_l + 1.0;
3153270192aSSatish Balay         aa = a->a + j*bs2;
3163270192aSSatish Balay         for ( k=0; k<bs; k++ ) {
3173270192aSSatish Balay           for ( l=0; l<bs; l++ ) {
3183270192aSSatish Balay           if (PetscReal(*aa++) != 0.) continue;
319b34f160eSSatish Balay           DrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);
3203270192aSSatish Balay           }
3213270192aSSatish Balay         }
3223270192aSSatish Balay       }
3233270192aSSatish Balay     }
3243270192aSSatish Balay 
3253270192aSSatish Balay     color = DRAW_RED;
3263270192aSSatish Balay     for ( i=0,row=0; i<mbs; i++,row+=bs ) {
3273270192aSSatish Balay       for ( j=a->i[i]; j<a->i[i+1]; j++ ) {
3283270192aSSatish Balay         y_l = a->m - row - 1.0; y_r = y_l + 1.0;
3293270192aSSatish Balay         x_l = a->j[j]*bs; x_r = x_l + 1.0;
3303270192aSSatish Balay         aa = a->a + j*bs2;
3313270192aSSatish Balay         for ( k=0; k<bs; k++ ) {
3323270192aSSatish Balay           for ( l=0; l<bs; l++ ) {
3333270192aSSatish Balay             if (PetscReal(*aa++) <= 0.) continue;
334b34f160eSSatish Balay             DrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);
3353270192aSSatish Balay           }
3363270192aSSatish Balay         }
3373270192aSSatish Balay       }
3383270192aSSatish Balay     }
3393270192aSSatish Balay     ierr = DrawGetMouseButton(draw,&button,&xc,&yc,0,0);
3403270192aSSatish Balay   }
3413270192aSSatish Balay   return 0;
3423270192aSSatish Balay }
3433270192aSSatish Balay 
3445615d1e5SSatish Balay #undef __FUNC__
3455eea60f9SBarry Smith #define __FUNC__ "MatView_SeqBAIJ" /* ADIC Ignore */
3468f6be9afSLois Curfman McInnes int MatView_SeqBAIJ(PetscObject obj,Viewer viewer)
3472593348eSBarry Smith {
3482593348eSBarry Smith   Mat         A = (Mat) obj;
34919bcc07fSBarry Smith   ViewerType  vtype;
35019bcc07fSBarry Smith   int         ierr;
3512593348eSBarry Smith 
35219bcc07fSBarry Smith   ierr = ViewerGetType(viewer,&vtype); CHKERRQ(ierr);
35319bcc07fSBarry Smith   if (vtype == MATLAB_VIEWER) {
354e3372554SBarry Smith     SETERRQ(1,0,"Matlab viewer not supported");
3552593348eSBarry Smith   }
35619bcc07fSBarry Smith   else if (vtype == ASCII_FILE_VIEWER || vtype == ASCII_FILES_VIEWER){
357b6490206SBarry Smith     return MatView_SeqBAIJ_ASCII(A,viewer);
3582593348eSBarry Smith   }
35919bcc07fSBarry Smith   else if (vtype == BINARY_FILE_VIEWER) {
360b6490206SBarry Smith     return MatView_SeqBAIJ_Binary(A,viewer);
3612593348eSBarry Smith   }
36219bcc07fSBarry Smith   else if (vtype == DRAW_VIEWER) {
3633270192aSSatish Balay     return MatView_SeqBAIJ_Draw(A,viewer);
3642593348eSBarry Smith   }
3652593348eSBarry Smith   return 0;
3662593348eSBarry Smith }
367b6490206SBarry Smith 
368119a934aSSatish Balay #define CHUNKSIZE  10
369cd0e1443SSatish Balay 
3705615d1e5SSatish Balay #undef __FUNC__
3715615d1e5SSatish Balay #define __FUNC__ "MatSetValues_SeqBAIJ"
372639f9d9dSBarry Smith int MatSetValues_SeqBAIJ(Mat A,int m,int *im,int n,int *in,Scalar *v,InsertMode is)
373cd0e1443SSatish Balay {
374cd0e1443SSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
375cd0e1443SSatish Balay   int         *rp,k,low,high,t,ii,row,nrow,i,col,l,rmax,N,sorted=a->sorted;
376cd0e1443SSatish Balay   int         *imax=a->imax,*ai=a->i,*ailen=a->ilen,roworiented=a->roworiented;
377a7c10996SSatish Balay   int         *aj=a->j,nonew=a->nonew,bs=a->bs,brow,bcol;
3789df24120SSatish Balay   int          ridx,cidx,bs2=a->bs2;
379cd0e1443SSatish Balay   Scalar      *ap,value,*aa=a->a,*bap;
380cd0e1443SSatish Balay 
381cd0e1443SSatish Balay   for ( k=0; k<m; k++ ) { /* loop over added rows */
382cd0e1443SSatish Balay     row  = im[k]; brow = row/bs;
3833b2fbd54SBarry Smith #if defined(PETSC_BOPT_g)
384e3372554SBarry Smith     if (row < 0) SETERRQ(1,0,"Negative row");
385e3372554SBarry Smith     if (row >= a->m) SETERRQ(1,0,"Row too large");
3863b2fbd54SBarry Smith #endif
3872c3acbe9SBarry Smith     rp   = aj + ai[brow];
3882c3acbe9SBarry Smith     ap   = aa + bs2*ai[brow];
3892c3acbe9SBarry Smith     rmax = imax[brow];
3902c3acbe9SBarry Smith     nrow = ailen[brow];
391cd0e1443SSatish Balay     low  = 0;
392cd0e1443SSatish Balay     for ( l=0; l<n; l++ ) { /* loop over added columns */
3933b2fbd54SBarry Smith #if defined(PETSC_BOPT_g)
394e3372554SBarry Smith       if (in[l] < 0) SETERRQ(1,0,"Negative column");
395e3372554SBarry Smith       if (in[l] >= a->n) SETERRQ(1,0,"Column too large");
3963b2fbd54SBarry Smith #endif
397a7c10996SSatish Balay       col = in[l]; bcol = col/bs;
398cd0e1443SSatish Balay       ridx = row % bs; cidx = col % bs;
399cd0e1443SSatish Balay       if (roworiented) {
400cd0e1443SSatish Balay         value = *v++;
401cd0e1443SSatish Balay       }
402cd0e1443SSatish Balay       else {
403cd0e1443SSatish Balay         value = v[k + l*m];
404cd0e1443SSatish Balay       }
405cd0e1443SSatish Balay       if (!sorted) low = 0; high = nrow;
4062c3acbe9SBarry Smith       while (high-low > 7) {
407cd0e1443SSatish Balay         t = (low+high)/2;
408cd0e1443SSatish Balay         if (rp[t] > bcol) high = t;
409cd0e1443SSatish Balay         else              low  = t;
410cd0e1443SSatish Balay       }
411cd0e1443SSatish Balay       for ( i=low; i<high; i++ ) {
412cd0e1443SSatish Balay         if (rp[i] > bcol) break;
413cd0e1443SSatish Balay         if (rp[i] == bcol) {
4147e67e3f9SSatish Balay           bap  = ap +  bs2*i + bs*cidx + ridx;
415cd0e1443SSatish Balay           if (is == ADD_VALUES) *bap += value;
416cd0e1443SSatish Balay           else                  *bap  = value;
417f1241b54SBarry Smith           goto noinsert1;
418cd0e1443SSatish Balay         }
419cd0e1443SSatish Balay       }
420c2653b3dSLois Curfman McInnes       if (nonew == 1) goto noinsert1;
42111ebbc71SLois Curfman McInnes       else if (nonew == -1) SETERRQ(1,0,"Inserting a new nonzero in the matrix");
422cd0e1443SSatish Balay       if (nrow >= rmax) {
423cd0e1443SSatish Balay         /* there is no extra room in row, therefore enlarge */
424cd0e1443SSatish Balay         int    new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j;
425cd0e1443SSatish Balay         Scalar *new_a;
426cd0e1443SSatish Balay 
42711ebbc71SLois Curfman McInnes         if (nonew == -2) SETERRQ(1,0,"Inserting a new nonzero in the matrix");
42896854ed6SLois Curfman McInnes 
42996854ed6SLois Curfman McInnes         /* Malloc new storage space */
4307e67e3f9SSatish Balay         len     = new_nz*(sizeof(int)+bs2*sizeof(Scalar))+(a->mbs+1)*sizeof(int);
431cd0e1443SSatish Balay         new_a   = (Scalar *) PetscMalloc( len ); CHKPTRQ(new_a);
4327e67e3f9SSatish Balay         new_j   = (int *) (new_a + bs2*new_nz);
433cd0e1443SSatish Balay         new_i   = new_j + new_nz;
434cd0e1443SSatish Balay 
435cd0e1443SSatish Balay         /* copy over old data into new slots */
436cd0e1443SSatish Balay         for ( ii=0; ii<brow+1; ii++ ) {new_i[ii] = ai[ii];}
4377e67e3f9SSatish Balay         for ( ii=brow+1; ii<a->mbs+1; ii++ ) {new_i[ii] = ai[ii]+CHUNKSIZE;}
438a7c10996SSatish Balay         PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(int));
439a7c10996SSatish Balay         len = (new_nz - CHUNKSIZE - ai[brow] - nrow);
440a7c10996SSatish Balay         PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow,
441cd0e1443SSatish Balay                                                            len*sizeof(int));
442a7c10996SSatish Balay         PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(Scalar));
443a7c10996SSatish Balay         PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(Scalar));
444a7c10996SSatish Balay         PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE),
445a7c10996SSatish Balay                     aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(Scalar));
446cd0e1443SSatish Balay         /* free up old matrix storage */
447cd0e1443SSatish Balay         PetscFree(a->a);
448cd0e1443SSatish Balay         if (!a->singlemalloc) {PetscFree(a->i);PetscFree(a->j);}
449cd0e1443SSatish Balay         aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j;
450cd0e1443SSatish Balay         a->singlemalloc = 1;
451cd0e1443SSatish Balay 
452a7c10996SSatish Balay         rp   = aj + ai[brow]; ap = aa + bs2*ai[brow];
453cd0e1443SSatish Balay         rmax = imax[brow] = imax[brow] + CHUNKSIZE;
4547e67e3f9SSatish Balay         PLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(Scalar)));
45518e7b8e4SLois Curfman McInnes         a->maxnz += bs2*CHUNKSIZE;
456cd0e1443SSatish Balay         a->reallocs++;
457119a934aSSatish Balay         a->nz++;
458cd0e1443SSatish Balay       }
4597e67e3f9SSatish Balay       N = nrow++ - 1;
460cd0e1443SSatish Balay       /* shift up all the later entries in this row */
461cd0e1443SSatish Balay       for ( ii=N; ii>=i; ii-- ) {
462cd0e1443SSatish Balay         rp[ii+1] = rp[ii];
4637e67e3f9SSatish Balay         PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(Scalar));
464cd0e1443SSatish Balay       }
4657e67e3f9SSatish Balay       if (N>=i) PetscMemzero(ap+bs2*i,bs2*sizeof(Scalar));
466cd0e1443SSatish Balay       rp[i]                      = bcol;
4677e67e3f9SSatish Balay       ap[bs2*i + bs*cidx + ridx] = value;
468f1241b54SBarry Smith       noinsert1:;
469cd0e1443SSatish Balay       low = i;
470cd0e1443SSatish Balay     }
471cd0e1443SSatish Balay     ailen[brow] = nrow;
472cd0e1443SSatish Balay   }
473cd0e1443SSatish Balay   return 0;
474cd0e1443SSatish Balay }
475cd0e1443SSatish Balay 
4765615d1e5SSatish Balay #undef __FUNC__
47705a5f48eSSatish Balay #define __FUNC__ "MatSetValuesBlocked_SeqBAIJ"
47892c4ed94SBarry Smith int MatSetValuesBlocked_SeqBAIJ(Mat A,int m,int *im,int n,int *in,Scalar *v,InsertMode is)
47992c4ed94SBarry Smith {
48092c4ed94SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
4818a84c255SSatish Balay   int         *rp,k,low,high,t,ii,jj,row,nrow,i,col,l,rmax,N,sorted=a->sorted;
4820e324ae4SSatish Balay   int         *imax=a->imax,*ai=a->i,*ailen=a->ilen;
4830e324ae4SSatish Balay   int         roworiented=a->roworiented;
4848a84c255SSatish Balay   int         *aj=a->j,nonew=a->nonew;
4850e324ae4SSatish Balay   int          bs2=a->bs2,bs=a->bs,stepval;
4860e324ae4SSatish Balay   Scalar      *ap,*value=v,*aa=a->a,*bap;
48792c4ed94SBarry Smith 
4880e324ae4SSatish Balay   if (roworiented) {
4890e324ae4SSatish Balay     stepval = (n-1)*bs;
4900e324ae4SSatish Balay   } else {
4910e324ae4SSatish Balay     stepval = (m-1)*bs;
4920e324ae4SSatish Balay   }
49392c4ed94SBarry Smith   for ( k=0; k<m; k++ ) { /* loop over added rows */
49492c4ed94SBarry Smith     row  = im[k];
49592c4ed94SBarry Smith #if defined(PETSC_BOPT_g)
49692c4ed94SBarry Smith     if (row < 0) SETERRQ(1,0,"Negative row");
4978a84c255SSatish Balay     if (row >= a->mbs) SETERRQ(1,0,"Row too large");
49892c4ed94SBarry Smith #endif
49992c4ed94SBarry Smith     rp   = aj + ai[row];
50092c4ed94SBarry Smith     ap   = aa + bs2*ai[row];
50192c4ed94SBarry Smith     rmax = imax[row];
50292c4ed94SBarry Smith     nrow = ailen[row];
50392c4ed94SBarry Smith     low  = 0;
50492c4ed94SBarry Smith     for ( l=0; l<n; l++ ) { /* loop over added columns */
50592c4ed94SBarry Smith #if defined(PETSC_BOPT_g)
50692c4ed94SBarry Smith       if (in[l] < 0) SETERRQ(1,0,"Negative column");
5078a84c255SSatish Balay       if (in[l] >= a->nbs) SETERRQ(1,0,"Column too large");
50892c4ed94SBarry Smith #endif
50992c4ed94SBarry Smith       col = in[l];
51092c4ed94SBarry Smith       if (roworiented) {
5110e324ae4SSatish Balay         value = v + k*(stepval+bs)*bs + l*bs;
5120e324ae4SSatish Balay       } else {
5130e324ae4SSatish Balay         value = v + l*(stepval+bs)*bs + k*bs;
51492c4ed94SBarry Smith       }
51592c4ed94SBarry Smith       if (!sorted) low = 0; high = nrow;
51692c4ed94SBarry Smith       while (high-low > 7) {
51792c4ed94SBarry Smith         t = (low+high)/2;
51892c4ed94SBarry Smith         if (rp[t] > col) high = t;
51992c4ed94SBarry Smith         else             low  = t;
52092c4ed94SBarry Smith       }
52192c4ed94SBarry Smith       for ( i=low; i<high; i++ ) {
52292c4ed94SBarry Smith         if (rp[i] > col) break;
52392c4ed94SBarry Smith         if (rp[i] == col) {
5248a84c255SSatish Balay           bap  = ap +  bs2*i;
5250e324ae4SSatish Balay           if (roworiented) {
5268a84c255SSatish Balay             if (is == ADD_VALUES) {
5270e324ae4SSatish Balay               for ( ii=0; ii<bs; ii++,value+=stepval )
5288a84c255SSatish Balay                 for (jj=ii; jj<bs2; jj+=bs )
5298a84c255SSatish Balay                   bap[jj] += *value++;
5300e324ae4SSatish Balay             } else {
5310e324ae4SSatish Balay               for ( ii=0; ii<bs; ii++,value+=stepval )
5320e324ae4SSatish Balay                 for (jj=ii; jj<bs2; jj+=bs )
5330e324ae4SSatish Balay                   bap[jj] = *value++;
5348a84c255SSatish Balay             }
5350e324ae4SSatish Balay           } else {
5360e324ae4SSatish Balay             if (is == ADD_VALUES) {
5370e324ae4SSatish Balay               for ( ii=0; ii<bs; ii++,value+=stepval )
5380e324ae4SSatish Balay                 for (jj=0; jj<bs; jj++ )
5390e324ae4SSatish Balay                   *bap++ += *value++;
5400e324ae4SSatish Balay             } else {
5410e324ae4SSatish Balay               for ( ii=0; ii<bs; ii++,value+=stepval )
5420e324ae4SSatish Balay                 for (jj=0; jj<bs; jj++ )
5430e324ae4SSatish Balay                   *bap++  = *value++;
5440e324ae4SSatish Balay             }
5458a84c255SSatish Balay           }
546f1241b54SBarry Smith           goto noinsert2;
54792c4ed94SBarry Smith         }
54892c4ed94SBarry Smith       }
54989280ab3SLois Curfman McInnes       if (nonew == 1) goto noinsert2;
55011ebbc71SLois Curfman McInnes       else if (nonew == -1) SETERRQ(1,0,"Inserting a new nonzero in the matrix");
55192c4ed94SBarry Smith       if (nrow >= rmax) {
55292c4ed94SBarry Smith         /* there is no extra room in row, therefore enlarge */
55392c4ed94SBarry Smith         int    new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j;
55492c4ed94SBarry Smith         Scalar *new_a;
55592c4ed94SBarry Smith 
55611ebbc71SLois Curfman McInnes         if (nonew == -2) SETERRQ(1,0,"Inserting a new nonzero in the matrix");
55789280ab3SLois Curfman McInnes 
55892c4ed94SBarry Smith         /* malloc new storage space */
55992c4ed94SBarry Smith         len     = new_nz*(sizeof(int)+bs2*sizeof(Scalar))+(a->mbs+1)*sizeof(int);
56092c4ed94SBarry Smith         new_a   = (Scalar *) PetscMalloc( len ); CHKPTRQ(new_a);
56192c4ed94SBarry Smith         new_j   = (int *) (new_a + bs2*new_nz);
56292c4ed94SBarry Smith         new_i   = new_j + new_nz;
56392c4ed94SBarry Smith 
56492c4ed94SBarry Smith         /* copy over old data into new slots */
56592c4ed94SBarry Smith         for ( ii=0; ii<row+1; ii++ ) {new_i[ii] = ai[ii];}
56692c4ed94SBarry Smith         for ( ii=row+1; ii<a->mbs+1; ii++ ) {new_i[ii] = ai[ii]+CHUNKSIZE;}
56792c4ed94SBarry Smith         PetscMemcpy(new_j,aj,(ai[row]+nrow)*sizeof(int));
56892c4ed94SBarry Smith         len = (new_nz - CHUNKSIZE - ai[row] - nrow);
56992c4ed94SBarry Smith         PetscMemcpy(new_j+ai[row]+nrow+CHUNKSIZE,aj+ai[row]+nrow,
57092c4ed94SBarry Smith                                                            len*sizeof(int));
57192c4ed94SBarry Smith         PetscMemcpy(new_a,aa,(ai[row]+nrow)*bs2*sizeof(Scalar));
57292c4ed94SBarry Smith         PetscMemzero(new_a+bs2*(ai[row]+nrow),bs2*CHUNKSIZE*sizeof(Scalar));
57392c4ed94SBarry Smith         PetscMemcpy(new_a+bs2*(ai[row]+nrow+CHUNKSIZE),
57492c4ed94SBarry Smith                     aa+bs2*(ai[row]+nrow),bs2*len*sizeof(Scalar));
57592c4ed94SBarry Smith         /* free up old matrix storage */
57692c4ed94SBarry Smith         PetscFree(a->a);
57792c4ed94SBarry Smith         if (!a->singlemalloc) {PetscFree(a->i);PetscFree(a->j);}
57892c4ed94SBarry Smith         aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j;
57992c4ed94SBarry Smith         a->singlemalloc = 1;
58092c4ed94SBarry Smith 
58192c4ed94SBarry Smith         rp   = aj + ai[row]; ap = aa + bs2*ai[row];
58292c4ed94SBarry Smith         rmax = imax[row] = imax[row] + CHUNKSIZE;
58392c4ed94SBarry Smith         PLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(Scalar)));
58492c4ed94SBarry Smith         a->maxnz += bs2*CHUNKSIZE;
58592c4ed94SBarry Smith         a->reallocs++;
58692c4ed94SBarry Smith         a->nz++;
58792c4ed94SBarry Smith       }
58892c4ed94SBarry Smith       N = nrow++ - 1;
58992c4ed94SBarry Smith       /* shift up all the later entries in this row */
59092c4ed94SBarry Smith       for ( ii=N; ii>=i; ii-- ) {
59192c4ed94SBarry Smith         rp[ii+1] = rp[ii];
59292c4ed94SBarry Smith         PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(Scalar));
59392c4ed94SBarry Smith       }
59492c4ed94SBarry Smith       if (N >= i) PetscMemzero(ap+bs2*i,bs2*sizeof(Scalar));
59592c4ed94SBarry Smith       rp[i] = col;
5968a84c255SSatish Balay       bap   = ap +  bs2*i;
5970e324ae4SSatish Balay       if (roworiented) {
5980e324ae4SSatish Balay         for ( ii=0; ii<bs; ii++,value+=stepval)
5998a84c255SSatish Balay           for (jj=ii; jj<bs2; jj+=bs )
6000e324ae4SSatish Balay             bap[jj] = *value++;
6010e324ae4SSatish Balay       } else {
6020e324ae4SSatish Balay         for ( ii=0; ii<bs; ii++,value+=stepval )
6030e324ae4SSatish Balay           for (jj=0; jj<bs; jj++ )
6040e324ae4SSatish Balay             *bap++  = *value++;
6050e324ae4SSatish Balay       }
606f1241b54SBarry Smith       noinsert2:;
60792c4ed94SBarry Smith       low = i;
60892c4ed94SBarry Smith     }
60992c4ed94SBarry Smith     ailen[row] = nrow;
61092c4ed94SBarry Smith   }
61192c4ed94SBarry Smith   return 0;
61292c4ed94SBarry Smith }
61392c4ed94SBarry Smith 
61492c4ed94SBarry Smith #undef __FUNC__
6155eea60f9SBarry Smith #define __FUNC__ "MatGetSize_SeqBAIJ" /* ADIC Ignore */
6168f6be9afSLois Curfman McInnes int MatGetSize_SeqBAIJ(Mat A,int *m,int *n)
6170b824a48SSatish Balay {
6180b824a48SSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
6190b824a48SSatish Balay   *m = a->m; *n = a->n;
6200b824a48SSatish Balay   return 0;
6210b824a48SSatish Balay }
6220b824a48SSatish Balay 
6235615d1e5SSatish Balay #undef __FUNC__
6245eea60f9SBarry Smith #define __FUNC__ "MatGetOwnershipRange_SeqBAIJ" /* ADIC Ignore */
6258f6be9afSLois Curfman McInnes int MatGetOwnershipRange_SeqBAIJ(Mat A,int *m,int *n)
6260b824a48SSatish Balay {
6270b824a48SSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
6280b824a48SSatish Balay   *m = 0; *n = a->m;
6290b824a48SSatish Balay   return 0;
6300b824a48SSatish Balay }
6310b824a48SSatish Balay 
6325615d1e5SSatish Balay #undef __FUNC__
6335615d1e5SSatish Balay #define __FUNC__ "MatGetRow_SeqBAIJ"
6349867e207SSatish Balay int MatGetRow_SeqBAIJ(Mat A,int row,int *nz,int **idx,Scalar **v)
6359867e207SSatish Balay {
6369867e207SSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
6377e67e3f9SSatish Balay   int          itmp,i,j,k,M,*ai,*aj,bs,bn,bp,*idx_i,bs2;
6389867e207SSatish Balay   Scalar      *aa,*v_i,*aa_i;
6399867e207SSatish Balay 
6409867e207SSatish Balay   bs  = a->bs;
6419867e207SSatish Balay   ai  = a->i;
6429867e207SSatish Balay   aj  = a->j;
6439867e207SSatish Balay   aa  = a->a;
6449df24120SSatish Balay   bs2 = a->bs2;
6459867e207SSatish Balay 
646e3372554SBarry Smith   if (row < 0 || row >= a->m) SETERRQ(1,0,"Row out of range");
6479867e207SSatish Balay 
6489867e207SSatish Balay   bn  = row/bs;   /* Block number */
6499867e207SSatish Balay   bp  = row % bs; /* Block Position */
6509867e207SSatish Balay   M   = ai[bn+1] - ai[bn];
6519867e207SSatish Balay   *nz = bs*M;
6529867e207SSatish Balay 
6539867e207SSatish Balay   if (v) {
6549867e207SSatish Balay     *v = 0;
6559867e207SSatish Balay     if (*nz) {
6569867e207SSatish Balay       *v = (Scalar *) PetscMalloc( (*nz)*sizeof(Scalar) ); CHKPTRQ(*v);
6579867e207SSatish Balay       for ( i=0; i<M; i++ ) { /* for each block in the block row */
6589867e207SSatish Balay         v_i  = *v + i*bs;
6597e67e3f9SSatish Balay         aa_i = aa + bs2*(ai[bn] + i);
6607e67e3f9SSatish Balay         for ( j=bp,k=0; j<bs2; j+=bs,k++ ) {v_i[k] = aa_i[j];}
6619867e207SSatish Balay       }
6629867e207SSatish Balay     }
6639867e207SSatish Balay   }
6649867e207SSatish Balay 
6659867e207SSatish Balay   if (idx) {
6669867e207SSatish Balay     *idx = 0;
6679867e207SSatish Balay     if (*nz) {
6689867e207SSatish Balay       *idx = (int *) PetscMalloc( (*nz)*sizeof(int) ); CHKPTRQ(*idx);
6699867e207SSatish Balay       for ( i=0; i<M; i++ ) { /* for each block in the block row */
6709867e207SSatish Balay         idx_i = *idx + i*bs;
6719867e207SSatish Balay         itmp  = bs*aj[ai[bn] + i];
6729867e207SSatish Balay         for ( j=0; j<bs; j++ ) {idx_i[j] = itmp++;}
6739867e207SSatish Balay       }
6749867e207SSatish Balay     }
6759867e207SSatish Balay   }
6769867e207SSatish Balay   return 0;
6779867e207SSatish Balay }
6789867e207SSatish Balay 
6795615d1e5SSatish Balay #undef __FUNC__
6805eea60f9SBarry Smith #define __FUNC__ "MatRestoreRow_SeqBAIJ" /* ADIC Ignore */
6819867e207SSatish Balay int MatRestoreRow_SeqBAIJ(Mat A,int row,int *nz,int **idx,Scalar **v)
6829867e207SSatish Balay {
6839867e207SSatish Balay   if (idx) {if (*idx) PetscFree(*idx);}
6849867e207SSatish Balay   if (v)   {if (*v)   PetscFree(*v);}
6859867e207SSatish Balay   return 0;
6869867e207SSatish Balay }
687b6490206SBarry Smith 
6885615d1e5SSatish Balay #undef __FUNC__
6895615d1e5SSatish Balay #define __FUNC__ "MatTranspose_SeqBAIJ"
6908f6be9afSLois Curfman McInnes int MatTranspose_SeqBAIJ(Mat A,Mat *B)
691f2501298SSatish Balay {
692f2501298SSatish Balay   Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data;
693f2501298SSatish Balay   Mat         C;
694f2501298SSatish Balay   int         i,j,k,ierr,*aj=a->j,*ai=a->i,bs=a->bs,mbs=a->mbs,nbs=a->nbs,len,*col;
6959df24120SSatish Balay   int         *rows,*cols,bs2=a->bs2;
696f2501298SSatish Balay   Scalar      *array=a->a;
697f2501298SSatish Balay 
698f2501298SSatish Balay   if (B==PETSC_NULL && mbs!=nbs)
699e3372554SBarry Smith     SETERRQ(1,0,"Square matrix only for in-place");
700f2501298SSatish Balay   col = (int *) PetscMalloc((1+nbs)*sizeof(int)); CHKPTRQ(col);
701f2501298SSatish Balay   PetscMemzero(col,(1+nbs)*sizeof(int));
702a7c10996SSatish Balay 
703a7c10996SSatish Balay   for ( i=0; i<ai[mbs]; i++ ) col[aj[i]] += 1;
704f2501298SSatish Balay   ierr = MatCreateSeqBAIJ(A->comm,bs,a->n,a->m,PETSC_NULL,col,&C); CHKERRQ(ierr);
705f2501298SSatish Balay   PetscFree(col);
706f2501298SSatish Balay   rows = (int *) PetscMalloc(2*bs*sizeof(int)); CHKPTRQ(rows);
707f2501298SSatish Balay   cols = rows + bs;
708f2501298SSatish Balay   for ( i=0; i<mbs; i++ ) {
709f2501298SSatish Balay     cols[0] = i*bs;
710f2501298SSatish Balay     for (k=1; k<bs; k++ ) cols[k] = cols[k-1] + 1;
711f2501298SSatish Balay     len = ai[i+1] - ai[i];
712f2501298SSatish Balay     for ( j=0; j<len; j++ ) {
713f2501298SSatish Balay       rows[0] = (*aj++)*bs;
714f2501298SSatish Balay       for (k=1; k<bs; k++ ) rows[k] = rows[k-1] + 1;
715f2501298SSatish Balay       ierr = MatSetValues(C,bs,rows,bs,cols,array,INSERT_VALUES); CHKERRQ(ierr);
716f2501298SSatish Balay       array += bs2;
717f2501298SSatish Balay     }
718f2501298SSatish Balay   }
7191073c447SSatish Balay   PetscFree(rows);
720f2501298SSatish Balay 
7216d4a8577SBarry Smith   ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
7226d4a8577SBarry Smith   ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
723f2501298SSatish Balay 
724f2501298SSatish Balay   if (B != PETSC_NULL) {
725f2501298SSatish Balay     *B = C;
726f2501298SSatish Balay   } else {
727f2501298SSatish Balay     /* This isn't really an in-place transpose */
728f2501298SSatish Balay     PetscFree(a->a);
729f2501298SSatish Balay     if (!a->singlemalloc) {PetscFree(a->i); PetscFree(a->j);}
730f2501298SSatish Balay     if (a->diag) PetscFree(a->diag);
731f2501298SSatish Balay     if (a->ilen) PetscFree(a->ilen);
732f2501298SSatish Balay     if (a->imax) PetscFree(a->imax);
733f2501298SSatish Balay     if (a->solve_work) PetscFree(a->solve_work);
734f2501298SSatish Balay     PetscFree(a);
735f09e8eb9SSatish Balay     PetscMemcpy(A,C,sizeof(struct _p_Mat));
736f2501298SSatish Balay     PetscHeaderDestroy(C);
737f2501298SSatish Balay   }
738f2501298SSatish Balay   return 0;
739f2501298SSatish Balay }
740f2501298SSatish Balay 
741f2501298SSatish Balay 
7425615d1e5SSatish Balay #undef __FUNC__
7435615d1e5SSatish Balay #define __FUNC__ "MatAssemblyEnd_SeqBAIJ"
7448f6be9afSLois Curfman McInnes int MatAssemblyEnd_SeqBAIJ(Mat A,MatAssemblyType mode)
745584200bdSSatish Balay {
746584200bdSSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
747584200bdSSatish Balay   int        fshift = 0,i,j,*ai = a->i, *aj = a->j, *imax = a->imax;
748a7c10996SSatish Balay   int        m = a->m,*ip, N, *ailen = a->ilen;
749d402145bSBarry Smith   int        mbs = a->mbs, bs2 = a->bs2,rmax;
750584200bdSSatish Balay   Scalar     *aa = a->a, *ap;
751584200bdSSatish Balay 
7526d4a8577SBarry Smith   if (mode == MAT_FLUSH_ASSEMBLY) return 0;
753584200bdSSatish Balay 
754d402145bSBarry Smith   rmax = ailen[0];
755584200bdSSatish Balay   for ( i=1; i<mbs; i++ ) {
756584200bdSSatish Balay     /* move each row back by the amount of empty slots (fshift) before it*/
757584200bdSSatish Balay     fshift += imax[i-1] - ailen[i-1];
758d402145bSBarry Smith     rmax   = PetscMax(rmax,ailen[i]);
759584200bdSSatish Balay     if (fshift) {
760a7c10996SSatish Balay       ip = aj + ai[i]; ap = aa + bs2*ai[i];
761584200bdSSatish Balay       N = ailen[i];
762584200bdSSatish Balay       for ( j=0; j<N; j++ ) {
763584200bdSSatish Balay         ip[j-fshift] = ip[j];
7647e67e3f9SSatish Balay         PetscMemcpy(ap+(j-fshift)*bs2,ap+j*bs2,bs2*sizeof(Scalar));
765584200bdSSatish Balay       }
766584200bdSSatish Balay     }
767584200bdSSatish Balay     ai[i] = ai[i-1] + ailen[i-1];
768584200bdSSatish Balay   }
769584200bdSSatish Balay   if (mbs) {
770584200bdSSatish Balay     fshift += imax[mbs-1] - ailen[mbs-1];
771584200bdSSatish Balay     ai[mbs] = ai[mbs-1] + ailen[mbs-1];
772584200bdSSatish Balay   }
773584200bdSSatish Balay   /* reset ilen and imax for each row */
774584200bdSSatish Balay   for ( i=0; i<mbs; i++ ) {
775584200bdSSatish Balay     ailen[i] = imax[i] = ai[i+1] - ai[i];
776584200bdSSatish Balay   }
777a7c10996SSatish Balay   a->nz = ai[mbs];
778584200bdSSatish Balay 
779584200bdSSatish Balay   /* diagonals may have moved, so kill the diagonal pointers */
780584200bdSSatish Balay   if (fshift && a->diag) {
781584200bdSSatish Balay     PetscFree(a->diag);
782584200bdSSatish Balay     PLogObjectMemory(A,-(m+1)*sizeof(int));
783584200bdSSatish Balay     a->diag = 0;
784584200bdSSatish Balay   }
7853d2013a6SLois Curfman McInnes   PLogInfo(A,"MatAssemblyEnd_SeqBAIJ:Matrix size: %d X %d, block size %d; storage space: %d unneeded, %d used\n",
786219d9a1aSLois Curfman McInnes            m,a->n,a->bs,fshift*bs2,a->nz*bs2);
7873d2013a6SLois Curfman McInnes   PLogInfo(A,"MatAssemblyEnd_SeqBAIJ:Number of mallocs during MatSetValues is %d\n",
788584200bdSSatish Balay            a->reallocs);
789d402145bSBarry Smith   PLogInfo(A,"MatAssemblyEnd_SeqBAIJ:Most nonzeros blocks in any row is %d\n",rmax);
790e2f3b5e9SSatish Balay   a->reallocs          = 0;
7914e220ebcSLois Curfman McInnes   A->info.nz_unneeded  = (double)fshift*bs2;
7924e220ebcSLois Curfman McInnes 
793584200bdSSatish Balay   return 0;
794584200bdSSatish Balay }
795584200bdSSatish Balay 
7965615d1e5SSatish Balay #undef __FUNC__
7975615d1e5SSatish Balay #define __FUNC__ "MatZeroEntries_SeqBAIJ"
7988f6be9afSLois Curfman McInnes int MatZeroEntries_SeqBAIJ(Mat A)
7992593348eSBarry Smith {
800b6490206SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
8019df24120SSatish Balay   PetscMemzero(a->a,a->bs2*a->i[a->mbs]*sizeof(Scalar));
8022593348eSBarry Smith   return 0;
8032593348eSBarry Smith }
8042593348eSBarry Smith 
8055615d1e5SSatish Balay #undef __FUNC__
8065eea60f9SBarry Smith #define __FUNC__ "MatDestroy_SeqBAIJ" /* ADIC Ignore */
807b6490206SBarry Smith int MatDestroy_SeqBAIJ(PetscObject obj)
8082593348eSBarry Smith {
8092593348eSBarry Smith   Mat         A  = (Mat) obj;
810b6490206SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
8112593348eSBarry Smith 
8122593348eSBarry Smith #if defined(PETSC_LOG)
8132593348eSBarry Smith   PLogObjectState(obj,"Rows=%d, Cols=%d, NZ=%d",a->m,a->n,a->nz);
8142593348eSBarry Smith #endif
8152593348eSBarry Smith   PetscFree(a->a);
8162593348eSBarry Smith   if (!a->singlemalloc) { PetscFree(a->i); PetscFree(a->j);}
8172593348eSBarry Smith   if (a->diag) PetscFree(a->diag);
8182593348eSBarry Smith   if (a->ilen) PetscFree(a->ilen);
8192593348eSBarry Smith   if (a->imax) PetscFree(a->imax);
8202593348eSBarry Smith   if (a->solve_work) PetscFree(a->solve_work);
821de6a44a3SBarry Smith   if (a->mult_work) PetscFree(a->mult_work);
8222593348eSBarry Smith   PetscFree(a);
823f2655603SLois Curfman McInnes   PLogObjectDestroy(A);
824f2655603SLois Curfman McInnes   PetscHeaderDestroy(A);
8252593348eSBarry Smith   return 0;
8262593348eSBarry Smith }
8272593348eSBarry Smith 
8285615d1e5SSatish Balay #undef __FUNC__
8295eea60f9SBarry Smith #define __FUNC__ "MatSetOption_SeqBAIJ" /* ADIC Ignore */
8308f6be9afSLois Curfman McInnes int MatSetOption_SeqBAIJ(Mat A,MatOption op)
8312593348eSBarry Smith {
832b6490206SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
8336d4a8577SBarry Smith   if      (op == MAT_ROW_ORIENTED)                 a->roworiented = 1;
8346d4a8577SBarry Smith   else if (op == MAT_COLUMN_ORIENTED)              a->roworiented = 0;
8356d4a8577SBarry Smith   else if (op == MAT_COLUMNS_SORTED)               a->sorted      = 1;
836219d9a1aSLois Curfman McInnes   else if (op == MAT_COLUMNS_UNSORTED)             a->sorted      = 0;
8376d4a8577SBarry Smith   else if (op == MAT_NO_NEW_NONZERO_LOCATIONS)     a->nonew       = 1;
838c2653b3dSLois Curfman McInnes   else if (op == MAT_NEW_NONZERO_LOCATION_ERROR)   a->nonew       = -1;
83996854ed6SLois Curfman McInnes   else if (op == MAT_NEW_NONZERO_ALLOCATION_ERROR) a->nonew       = -2;
8406d4a8577SBarry Smith   else if (op == MAT_YES_NEW_NONZERO_LOCATIONS)    a->nonew       = 0;
8416d4a8577SBarry Smith   else if (op == MAT_ROWS_SORTED ||
842219d9a1aSLois Curfman McInnes            op == MAT_ROWS_UNSORTED ||
8436d4a8577SBarry Smith            op == MAT_SYMMETRIC ||
8446d4a8577SBarry Smith            op == MAT_STRUCTURALLY_SYMMETRIC ||
84590f02eecSBarry Smith            op == MAT_YES_NEW_DIAGONALS ||
8462b362799SSatish Balay            op == MAT_IGNORE_OFF_PROC_ENTRIES)
84794a424c1SBarry Smith     PLogInfo(A,"Info:MatSetOption_SeqBAIJ:Option ignored\n");
8486d4a8577SBarry Smith   else if (op == MAT_NO_NEW_DIAGONALS)
849e3372554SBarry Smith     {SETERRQ(PETSC_ERR_SUP,0,"MAT_NO_NEW_DIAGONALS");}
8502593348eSBarry Smith   else
851e3372554SBarry Smith     {SETERRQ(PETSC_ERR_SUP,0,"unknown option");}
8522593348eSBarry Smith   return 0;
8532593348eSBarry Smith }
8542593348eSBarry Smith 
8552593348eSBarry Smith 
8562593348eSBarry Smith /* -------------------------------------------------------*/
8572593348eSBarry Smith /* Should check that shapes of vectors and matrices match */
8582593348eSBarry Smith /* -------------------------------------------------------*/
859b6490206SBarry Smith #include "pinclude/plapack.h"
860b6490206SBarry Smith 
8615615d1e5SSatish Balay #undef __FUNC__
8625615d1e5SSatish Balay #define __FUNC__ "MatMult_SeqBAIJ_1"
86339b95ed1SBarry Smith static int MatMult_SeqBAIJ_1(Mat A,Vec xx,Vec zz)
8642593348eSBarry Smith {
865b6490206SBarry Smith   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
86639b95ed1SBarry Smith   register Scalar *x,*z,*v,sum;
867c16cb8f2SBarry Smith   int             mbs=a->mbs,i,*idx,*ii,n;
8682593348eSBarry Smith 
869c16cb8f2SBarry Smith   VecGetArray_Fast(xx,x);
870c16cb8f2SBarry Smith   VecGetArray_Fast(zz,z);
871b6490206SBarry Smith 
872119a934aSSatish Balay   idx   = a->j;
873119a934aSSatish Balay   v     = a->a;
874119a934aSSatish Balay   ii    = a->i;
875119a934aSSatish Balay 
876119a934aSSatish Balay   for ( i=0; i<mbs; i++ ) {
877119a934aSSatish Balay     n    = ii[1] - ii[0]; ii++;
878119a934aSSatish Balay     sum  = 0.0;
879119a934aSSatish Balay     while (n--) sum += *v++ * x[*idx++];
8801a6a6d98SBarry Smith     z[i] = sum;
881119a934aSSatish Balay   }
882c16cb8f2SBarry Smith   VecRestoreArray_Fast(xx,x);
883c16cb8f2SBarry Smith   VecRestoreArray_Fast(zz,z);
88439b95ed1SBarry Smith   PLogFlops(2*a->nz - a->m);
88539b95ed1SBarry Smith   return 0;
88639b95ed1SBarry Smith }
88739b95ed1SBarry Smith 
8885615d1e5SSatish Balay #undef __FUNC__
8895615d1e5SSatish Balay #define __FUNC__ "MatMult_SeqBAIJ_2"
89039b95ed1SBarry Smith static int MatMult_SeqBAIJ_2(Mat A,Vec xx,Vec zz)
89139b95ed1SBarry Smith {
89239b95ed1SBarry Smith   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
89339b95ed1SBarry Smith   register Scalar *x,*z,*v,*xb,sum1,sum2;
89439b95ed1SBarry Smith   register Scalar x1,x2;
89539b95ed1SBarry Smith   int             mbs=a->mbs,i,*idx,*ii;
896c16cb8f2SBarry Smith   int             j,n;
89739b95ed1SBarry Smith 
898c16cb8f2SBarry Smith   VecGetArray_Fast(xx,x);
899c16cb8f2SBarry Smith   VecGetArray_Fast(zz,z);
90039b95ed1SBarry Smith 
90139b95ed1SBarry Smith   idx   = a->j;
90239b95ed1SBarry Smith   v     = a->a;
90339b95ed1SBarry Smith   ii    = a->i;
90439b95ed1SBarry Smith 
905119a934aSSatish Balay   for ( i=0; i<mbs; i++ ) {
906119a934aSSatish Balay     n  = ii[1] - ii[0]; ii++;
907119a934aSSatish Balay     sum1 = 0.0; sum2 = 0.0;
908119a934aSSatish Balay     for ( j=0; j<n; j++ ) {
909119a934aSSatish Balay       xb = x + 2*(*idx++); x1 = xb[0]; x2 = xb[1];
910119a934aSSatish Balay       sum1 += v[0]*x1 + v[2]*x2;
911119a934aSSatish Balay       sum2 += v[1]*x1 + v[3]*x2;
912119a934aSSatish Balay       v += 4;
913119a934aSSatish Balay     }
9141a6a6d98SBarry Smith     z[0] = sum1; z[1] = sum2;
915119a934aSSatish Balay     z += 2;
916119a934aSSatish Balay   }
917c16cb8f2SBarry Smith   VecRestoreArray_Fast(xx,x);
918c16cb8f2SBarry Smith   VecRestoreArray_Fast(zz,z);
91939b95ed1SBarry Smith   PLogFlops(4*a->nz - a->m);
92039b95ed1SBarry Smith   return 0;
92139b95ed1SBarry Smith }
92239b95ed1SBarry Smith 
9235615d1e5SSatish Balay #undef __FUNC__
9245615d1e5SSatish Balay #define __FUNC__ "MatMult_SeqBAIJ_3"
92539b95ed1SBarry Smith static int MatMult_SeqBAIJ_3(Mat A,Vec xx,Vec zz)
92639b95ed1SBarry Smith {
92739b95ed1SBarry Smith   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
92839b95ed1SBarry Smith   register Scalar *x,*z,*v,*xb,sum1,sum2,sum3,x1,x2,x3;
929c16cb8f2SBarry Smith   int             mbs=a->mbs,i,*idx,*ii,j,n;
93039b95ed1SBarry Smith 
931c16cb8f2SBarry Smith   VecGetArray_Fast(xx,x);
932c16cb8f2SBarry Smith   VecGetArray_Fast(zz,z);
93339b95ed1SBarry Smith 
93439b95ed1SBarry Smith   idx   = a->j;
93539b95ed1SBarry Smith   v     = a->a;
93639b95ed1SBarry Smith   ii    = a->i;
93739b95ed1SBarry Smith 
938119a934aSSatish Balay   for ( i=0; i<mbs; i++ ) {
939119a934aSSatish Balay     n  = ii[1] - ii[0]; ii++;
940119a934aSSatish Balay     sum1 = 0.0; sum2 = 0.0; sum3 = 0.0;
941119a934aSSatish Balay     for ( j=0; j<n; j++ ) {
942119a934aSSatish Balay       xb = x + 3*(*idx++); x1 = xb[0]; x2 = xb[1]; x3 = xb[2];
943119a934aSSatish Balay       sum1 += v[0]*x1 + v[3]*x2 + v[6]*x3;
944119a934aSSatish Balay       sum2 += v[1]*x1 + v[4]*x2 + v[7]*x3;
945119a934aSSatish Balay       sum3 += v[2]*x1 + v[5]*x2 + v[8]*x3;
946119a934aSSatish Balay       v += 9;
947119a934aSSatish Balay     }
9481a6a6d98SBarry Smith     z[0] = sum1; z[1] = sum2; z[2] = sum3;
949119a934aSSatish Balay     z += 3;
950119a934aSSatish Balay   }
951c16cb8f2SBarry Smith   VecRestoreArray_Fast(xx,x);
952c16cb8f2SBarry Smith   VecRestoreArray_Fast(zz,z);
95339b95ed1SBarry Smith   PLogFlops(18*a->nz - a->m);
95439b95ed1SBarry Smith   return 0;
95539b95ed1SBarry Smith }
95639b95ed1SBarry Smith 
9575615d1e5SSatish Balay #undef __FUNC__
9585615d1e5SSatish Balay #define __FUNC__ "MatMult_SeqBAIJ_4"
95939b95ed1SBarry Smith static int MatMult_SeqBAIJ_4(Mat A,Vec xx,Vec zz)
96039b95ed1SBarry Smith {
96139b95ed1SBarry Smith   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
96239b95ed1SBarry Smith   register Scalar *x,*z,*v,*xb,sum1,sum2,sum3,sum4;
96339b95ed1SBarry Smith   register Scalar x1,x2,x3,x4;
96439b95ed1SBarry Smith   int             mbs=a->mbs,i,*idx,*ii;
965c16cb8f2SBarry Smith   int             j,n;
96639b95ed1SBarry Smith 
967c16cb8f2SBarry Smith   VecGetArray_Fast(xx,x);
968c16cb8f2SBarry Smith   VecGetArray_Fast(zz,z);
96939b95ed1SBarry Smith 
97039b95ed1SBarry Smith   idx   = a->j;
97139b95ed1SBarry Smith   v     = a->a;
97239b95ed1SBarry Smith   ii    = a->i;
97339b95ed1SBarry Smith 
974119a934aSSatish Balay   for ( i=0; i<mbs; i++ ) {
975119a934aSSatish Balay     n  = ii[1] - ii[0]; ii++;
976119a934aSSatish Balay     sum1 = 0.0; sum2 = 0.0; sum3 = 0.0; sum4 = 0.0;
977119a934aSSatish Balay     for ( j=0; j<n; j++ ) {
978119a934aSSatish Balay       xb = x + 4*(*idx++);
979119a934aSSatish Balay       x1 = xb[0]; x2 = xb[1]; x3 = xb[2]; x4 = xb[3];
980119a934aSSatish Balay       sum1 += v[0]*x1 + v[4]*x2 + v[8]*x3   + v[12]*x4;
981119a934aSSatish Balay       sum2 += v[1]*x1 + v[5]*x2 + v[9]*x3   + v[13]*x4;
982119a934aSSatish Balay       sum3 += v[2]*x1 + v[6]*x2 + v[10]*x3  + v[14]*x4;
983119a934aSSatish Balay       sum4 += v[3]*x1 + v[7]*x2 + v[11]*x3  + v[15]*x4;
984119a934aSSatish Balay       v += 16;
985119a934aSSatish Balay     }
9861a6a6d98SBarry Smith     z[0] = sum1; z[1] = sum2; z[2] = sum3; z[3] = sum4;
987119a934aSSatish Balay     z += 4;
988119a934aSSatish Balay   }
989c16cb8f2SBarry Smith   VecRestoreArray_Fast(xx,x);
990c16cb8f2SBarry Smith   VecRestoreArray_Fast(zz,z);
99139b95ed1SBarry Smith   PLogFlops(32*a->nz - a->m);
99239b95ed1SBarry Smith   return 0;
99339b95ed1SBarry Smith }
99439b95ed1SBarry Smith 
9955615d1e5SSatish Balay #undef __FUNC__
9965615d1e5SSatish Balay #define __FUNC__ "MatMult_SeqBAIJ_5"
99739b95ed1SBarry Smith static int MatMult_SeqBAIJ_5(Mat A,Vec xx,Vec zz)
99839b95ed1SBarry Smith {
99939b95ed1SBarry Smith   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
100039b95ed1SBarry Smith   register Scalar *x,*z,*v,*xb,sum1,sum2,sum3,sum4,sum5;
100139b95ed1SBarry Smith   register Scalar x1,x2,x3,x4,x5;
1002c16cb8f2SBarry Smith   int             mbs=a->mbs,i,*idx,*ii,j,n;
100339b95ed1SBarry Smith 
1004c16cb8f2SBarry Smith   VecGetArray_Fast(xx,x);
1005c16cb8f2SBarry Smith   VecGetArray_Fast(zz,z);
100639b95ed1SBarry Smith 
100739b95ed1SBarry Smith   idx   = a->j;
100839b95ed1SBarry Smith   v     = a->a;
100939b95ed1SBarry Smith   ii    = a->i;
101039b95ed1SBarry Smith 
1011119a934aSSatish Balay   for ( i=0; i<mbs; i++ ) {
1012119a934aSSatish Balay     n  = ii[1] - ii[0]; ii++;
1013119a934aSSatish Balay     sum1 = 0.0; sum2 = 0.0; sum3 = 0.0; sum4 = 0.0; sum5 = 0.0;
1014119a934aSSatish Balay     for ( j=0; j<n; j++ ) {
1015119a934aSSatish Balay       xb = x + 5*(*idx++);
1016119a934aSSatish Balay       x1 = xb[0]; x2 = xb[1]; x3 = xb[2]; x4 = xb[3]; x5 = xb[4];
1017119a934aSSatish Balay       sum1 += v[0]*x1 + v[5]*x2 + v[10]*x3  + v[15]*x4 + v[20]*x5;
1018119a934aSSatish Balay       sum2 += v[1]*x1 + v[6]*x2 + v[11]*x3  + v[16]*x4 + v[21]*x5;
1019119a934aSSatish Balay       sum3 += v[2]*x1 + v[7]*x2 + v[12]*x3  + v[17]*x4 + v[22]*x5;
1020119a934aSSatish Balay       sum4 += v[3]*x1 + v[8]*x2 + v[13]*x3  + v[18]*x4 + v[23]*x5;
1021119a934aSSatish Balay       sum5 += v[4]*x1 + v[9]*x2 + v[14]*x3  + v[19]*x4 + v[24]*x5;
1022119a934aSSatish Balay       v += 25;
1023119a934aSSatish Balay     }
10241a6a6d98SBarry Smith     z[0] = sum1; z[1] = sum2; z[2] = sum3; z[3] = sum4; z[4] = sum5;
1025119a934aSSatish Balay     z += 5;
1026119a934aSSatish Balay   }
1027c16cb8f2SBarry Smith   VecRestoreArray_Fast(xx,x);
1028c16cb8f2SBarry Smith   VecRestoreArray_Fast(zz,z);
102939b95ed1SBarry Smith   PLogFlops(50*a->nz - a->m);
103039b95ed1SBarry Smith   return 0;
103139b95ed1SBarry Smith }
103239b95ed1SBarry Smith 
10335615d1e5SSatish Balay #undef __FUNC__
103448e9ddb2SSatish Balay #define __FUNC__ "MatMult_SeqBAIJ_7"
103548e9ddb2SSatish Balay static int MatMult_SeqBAIJ_7(Mat A,Vec xx,Vec zz)
103648e9ddb2SSatish Balay {
103748e9ddb2SSatish Balay   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
103848e9ddb2SSatish Balay   register Scalar *x,*z,*v,*xb,sum1,sum2,sum3,sum4,sum5,sum6,sum7;
103948e9ddb2SSatish Balay   register Scalar x1,x2,x3,x4,x5,x6,x7;
104048e9ddb2SSatish Balay   int             mbs=a->mbs,i,*idx,*ii,j,n;
104148e9ddb2SSatish Balay 
104248e9ddb2SSatish Balay   VecGetArray_Fast(xx,x);
104348e9ddb2SSatish Balay   VecGetArray_Fast(zz,z);
104448e9ddb2SSatish Balay 
104548e9ddb2SSatish Balay   idx   = a->j;
104648e9ddb2SSatish Balay   v     = a->a;
104748e9ddb2SSatish Balay   ii    = a->i;
104848e9ddb2SSatish Balay 
104948e9ddb2SSatish Balay   for ( i=0; i<mbs; i++ ) {
105048e9ddb2SSatish Balay     n  = ii[1] - ii[0]; ii++;
105148e9ddb2SSatish Balay     sum1 = 0.0; sum2 = 0.0; sum3 = 0.0; sum4 = 0.0; sum5 = 0.0; sum6 = 0.0; sum7 = 0.0;
105248e9ddb2SSatish Balay     for ( j=0; j<n; j++ ) {
105348e9ddb2SSatish Balay       xb = x + 7*(*idx++);
105448e9ddb2SSatish Balay       x1 = xb[0]; x2 = xb[1]; x3 = xb[2]; x4 = xb[3]; x5 = xb[4]; x6 = xb[5]; x7 = xb[6];
105548e9ddb2SSatish Balay       sum1 += v[0]*x1 + v[7]*x2  + v[14]*x3  + v[21]*x4 + v[28]*x5 + v[35]*x6 + v[42]*x7;
105648e9ddb2SSatish Balay       sum2 += v[1]*x1 + v[8]*x2  + v[15]*x3  + v[22]*x4 + v[29]*x5 + v[36]*x6 + v[43]*x7;
105748e9ddb2SSatish Balay       sum3 += v[2]*x1 + v[9]*x2  + v[16]*x3  + v[23]*x4 + v[30]*x5 + v[37]*x6 + v[44]*x7;
105848e9ddb2SSatish Balay       sum4 += v[3]*x1 + v[10]*x2 + v[17]*x3  + v[24]*x4 + v[31]*x5 + v[38]*x6 + v[45]*x7;
105948e9ddb2SSatish Balay       sum5 += v[4]*x1 + v[11]*x2 + v[18]*x3  + v[25]*x4 + v[32]*x5 + v[39]*x6 + v[46]*x7;
106048e9ddb2SSatish Balay       sum6 += v[5]*x1 + v[12]*x2 + v[19]*x3  + v[26]*x4 + v[33]*x5 + v[40]*x6 + v[47]*x7;
106148e9ddb2SSatish Balay       sum7 += v[6]*x1 + v[13]*x2 + v[20]*x3  + v[27]*x4 + v[34]*x5 + v[41]*x6 + v[48]*x7;
106248e9ddb2SSatish Balay       v += 49;
106348e9ddb2SSatish Balay     }
106448e9ddb2SSatish Balay     z[0] = sum1; z[1] = sum2; z[2] = sum3; z[3] = sum4; z[4] = sum5; z[5] = sum6; z[6] = sum7;
106548e9ddb2SSatish Balay     z += 7;
106648e9ddb2SSatish Balay   }
106748e9ddb2SSatish Balay 
106848e9ddb2SSatish Balay   VecRestoreArray_Fast(xx,x);
106948e9ddb2SSatish Balay   VecRestoreArray_Fast(zz,z);
107048e9ddb2SSatish Balay   PLogFlops(98*a->nz - a->m);
107148e9ddb2SSatish Balay   return 0;
107248e9ddb2SSatish Balay }
107348e9ddb2SSatish Balay 
107448e9ddb2SSatish Balay #undef __FUNC__
10755615d1e5SSatish Balay #define __FUNC__ "MatMult_SeqBAIJ_N"
107639b95ed1SBarry Smith static int MatMult_SeqBAIJ_N(Mat A,Vec xx,Vec zz)
107739b95ed1SBarry Smith {
107839b95ed1SBarry Smith   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
107939b95ed1SBarry Smith   register Scalar *x,*z,*v,*xb;
1080c16cb8f2SBarry Smith   int             mbs=a->mbs,i,*idx,*ii,bs=a->bs,j,n,bs2=a->bs2;
1081c16cb8f2SBarry Smith   int             _One = 1,ncols,k;
1082c16cb8f2SBarry Smith   Scalar          _DOne = 1.0,*work,*workt,_DZero = 0.0;
108339b95ed1SBarry Smith 
1084c16cb8f2SBarry Smith   VecGetArray_Fast(xx,x);
1085c16cb8f2SBarry Smith   VecGetArray_Fast(zz,z);
108639b95ed1SBarry Smith 
108739b95ed1SBarry Smith   idx   = a->j;
108839b95ed1SBarry Smith   v     = a->a;
108939b95ed1SBarry Smith   ii    = a->i;
109039b95ed1SBarry Smith 
109139b95ed1SBarry Smith 
1092119a934aSSatish Balay   if (!a->mult_work) {
10933b547af2SSatish Balay     k = PetscMax(a->m,a->n);
10942b3076dcSSatish Balay     a->mult_work = (Scalar *) PetscMalloc((k+1)*sizeof(Scalar));CHKPTRQ(a->mult_work);
1095119a934aSSatish Balay   }
1096119a934aSSatish Balay   work = a->mult_work;
1097119a934aSSatish Balay   for ( i=0; i<mbs; i++ ) {
1098119a934aSSatish Balay     n     = ii[1] - ii[0]; ii++;
1099119a934aSSatish Balay     ncols = n*bs;
1100119a934aSSatish Balay     workt = work;
1101119a934aSSatish Balay     for ( j=0; j<n; j++ ) {
1102119a934aSSatish Balay       xb = x + bs*(*idx++);
1103119a934aSSatish Balay       for ( k=0; k<bs; k++ ) workt[k] = xb[k];
1104119a934aSSatish Balay       workt += bs;
1105119a934aSSatish Balay     }
11061a6a6d98SBarry Smith     LAgemv_("N",&bs,&ncols,&_DOne,v,&bs,work,&_One,&_DZero,z,&_One);
1107119a934aSSatish Balay     v += n*bs2;
1108119a934aSSatish Balay     z += bs;
1109119a934aSSatish Balay   }
1110c16cb8f2SBarry Smith   VecRestoreArray_Fast(xx,x);
1111c16cb8f2SBarry Smith   VecRestoreArray_Fast(zz,z);
11121a6a6d98SBarry Smith   PLogFlops(2*a->nz*bs2 - a->m);
1113bb42667fSSatish Balay   return 0;
1114bb42667fSSatish Balay }
1115bb42667fSSatish Balay 
11165615d1e5SSatish Balay #undef __FUNC__
11175615d1e5SSatish Balay #define __FUNC__ "MatMultAdd_SeqBAIJ_1"
1118f44d3a6dSSatish Balay static int MatMultAdd_SeqBAIJ_1(Mat A,Vec xx,Vec yy,Vec zz)
1119f44d3a6dSSatish Balay {
1120f44d3a6dSSatish Balay   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
1121f44d3a6dSSatish Balay   register Scalar *x,*y,*z,*v,sum;
1122c16cb8f2SBarry Smith   int             mbs=a->mbs,i,*idx,*ii,n;
1123f44d3a6dSSatish Balay 
1124c16cb8f2SBarry Smith   VecGetArray_Fast(xx,x);
1125c16cb8f2SBarry Smith   VecGetArray_Fast(yy,y);
1126c16cb8f2SBarry Smith   VecGetArray_Fast(zz,z);
1127f44d3a6dSSatish Balay 
1128f44d3a6dSSatish Balay   idx   = a->j;
1129f44d3a6dSSatish Balay   v     = a->a;
1130f44d3a6dSSatish Balay   ii    = a->i;
1131f44d3a6dSSatish Balay 
1132f44d3a6dSSatish Balay   for ( i=0; i<mbs; i++ ) {
1133f44d3a6dSSatish Balay     n    = ii[1] - ii[0]; ii++;
1134f44d3a6dSSatish Balay     sum  = y[i];
1135f44d3a6dSSatish Balay     while (n--) sum += *v++ * x[*idx++];
1136f44d3a6dSSatish Balay     z[i] = sum;
1137f44d3a6dSSatish Balay   }
1138c16cb8f2SBarry Smith   VecRestoreArray_Fast(xx,x);
1139c16cb8f2SBarry Smith   VecRestoreArray_Fast(yy,y);
1140c16cb8f2SBarry Smith   VecRestoreArray_Fast(zz,z);
1141f44d3a6dSSatish Balay   PLogFlops(2*a->nz);
1142f44d3a6dSSatish Balay   return 0;
1143f44d3a6dSSatish Balay }
1144f44d3a6dSSatish Balay 
11455615d1e5SSatish Balay #undef __FUNC__
11465615d1e5SSatish Balay #define __FUNC__ "MatMultAdd_SeqBAIJ_2"
1147f44d3a6dSSatish Balay static int MatMultAdd_SeqBAIJ_2(Mat A,Vec xx,Vec yy,Vec zz)
1148f44d3a6dSSatish Balay {
1149f44d3a6dSSatish Balay   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
1150f44d3a6dSSatish Balay   register Scalar *x,*y,*z,*v,*xb,sum1,sum2;
1151f44d3a6dSSatish Balay   register Scalar x1,x2;
1152f44d3a6dSSatish Balay   int             mbs=a->mbs,i,*idx,*ii;
1153c16cb8f2SBarry Smith   int             j,n;
1154f44d3a6dSSatish Balay 
1155c16cb8f2SBarry Smith   VecGetArray_Fast(xx,x);
1156c16cb8f2SBarry Smith   VecGetArray_Fast(yy,y);
1157c16cb8f2SBarry Smith   VecGetArray_Fast(zz,z);
1158f44d3a6dSSatish Balay 
1159f44d3a6dSSatish Balay   idx   = a->j;
1160f44d3a6dSSatish Balay   v     = a->a;
1161f44d3a6dSSatish Balay   ii    = a->i;
1162f44d3a6dSSatish Balay 
1163f44d3a6dSSatish Balay   for ( i=0; i<mbs; i++ ) {
1164f44d3a6dSSatish Balay     n  = ii[1] - ii[0]; ii++;
1165f44d3a6dSSatish Balay     sum1 = y[0]; sum2 = y[1];
1166f44d3a6dSSatish Balay     for ( j=0; j<n; j++ ) {
1167f44d3a6dSSatish Balay       xb = x + 2*(*idx++); x1 = xb[0]; x2 = xb[1];
1168f44d3a6dSSatish Balay       sum1 += v[0]*x1 + v[2]*x2;
1169f44d3a6dSSatish Balay       sum2 += v[1]*x1 + v[3]*x2;
1170f44d3a6dSSatish Balay       v += 4;
1171f44d3a6dSSatish Balay     }
1172f44d3a6dSSatish Balay     z[0] = sum1; z[1] = sum2;
1173f44d3a6dSSatish Balay     z += 2; y += 2;
1174f44d3a6dSSatish Balay   }
1175c16cb8f2SBarry Smith   VecRestoreArray_Fast(xx,x);
1176c16cb8f2SBarry Smith   VecRestoreArray_Fast(yy,y);
1177c16cb8f2SBarry Smith   VecRestoreArray_Fast(zz,z);
1178f44d3a6dSSatish Balay   PLogFlops(4*a->nz);
1179f44d3a6dSSatish Balay   return 0;
1180f44d3a6dSSatish Balay }
1181f44d3a6dSSatish Balay 
11825615d1e5SSatish Balay #undef __FUNC__
11835615d1e5SSatish Balay #define __FUNC__ "MatMultAdd_SeqBAIJ_3"
1184f44d3a6dSSatish Balay static int MatMultAdd_SeqBAIJ_3(Mat A,Vec xx,Vec yy,Vec zz)
1185f44d3a6dSSatish Balay {
1186f44d3a6dSSatish Balay   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
1187f44d3a6dSSatish Balay   register Scalar *x,*y,*z,*v,*xb,sum1,sum2,sum3,x1,x2,x3;
1188c16cb8f2SBarry Smith   int             mbs=a->mbs,i,*idx,*ii,j,n;
1189f44d3a6dSSatish Balay 
1190c16cb8f2SBarry Smith   VecGetArray_Fast(xx,x);
1191c16cb8f2SBarry Smith   VecGetArray_Fast(yy,y);
1192c16cb8f2SBarry Smith   VecGetArray_Fast(zz,z);
1193f44d3a6dSSatish Balay 
1194f44d3a6dSSatish Balay   idx   = a->j;
1195f44d3a6dSSatish Balay   v     = a->a;
1196f44d3a6dSSatish Balay   ii    = a->i;
1197f44d3a6dSSatish Balay 
1198f44d3a6dSSatish Balay   for ( i=0; i<mbs; i++ ) {
1199f44d3a6dSSatish Balay     n  = ii[1] - ii[0]; ii++;
1200f44d3a6dSSatish Balay     sum1 = y[0]; sum2 = y[1]; sum3 = y[2];
1201f44d3a6dSSatish Balay     for ( j=0; j<n; j++ ) {
1202f44d3a6dSSatish Balay       xb = x + 3*(*idx++); x1 = xb[0]; x2 = xb[1]; x3 = xb[2];
1203f44d3a6dSSatish Balay       sum1 += v[0]*x1 + v[3]*x2 + v[6]*x3;
1204f44d3a6dSSatish Balay       sum2 += v[1]*x1 + v[4]*x2 + v[7]*x3;
1205f44d3a6dSSatish Balay       sum3 += v[2]*x1 + v[5]*x2 + v[8]*x3;
1206f44d3a6dSSatish Balay       v += 9;
1207f44d3a6dSSatish Balay     }
1208f44d3a6dSSatish Balay     z[0] = sum1; z[1] = sum2; z[2] = sum3;
1209f44d3a6dSSatish Balay     z += 3; y += 3;
1210f44d3a6dSSatish Balay   }
1211c16cb8f2SBarry Smith   VecRestoreArray_Fast(xx,x);
1212c16cb8f2SBarry Smith   VecRestoreArray_Fast(yy,y);
1213c16cb8f2SBarry Smith   VecRestoreArray_Fast(zz,z);
1214f44d3a6dSSatish Balay   PLogFlops(18*a->nz);
1215f44d3a6dSSatish Balay   return 0;
1216f44d3a6dSSatish Balay }
1217f44d3a6dSSatish Balay 
12185615d1e5SSatish Balay #undef __FUNC__
12195615d1e5SSatish Balay #define __FUNC__ "MatMultAdd_SeqBAIJ_4"
1220f44d3a6dSSatish Balay static int MatMultAdd_SeqBAIJ_4(Mat A,Vec xx,Vec yy,Vec zz)
1221f44d3a6dSSatish Balay {
1222f44d3a6dSSatish Balay   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
1223f44d3a6dSSatish Balay   register Scalar *x,*y,*z,*v,*xb,sum1,sum2,sum3,sum4;
1224f44d3a6dSSatish Balay   register Scalar x1,x2,x3,x4;
1225f44d3a6dSSatish Balay   int             mbs=a->mbs,i,*idx,*ii;
1226c16cb8f2SBarry Smith   int             j,n;
1227f44d3a6dSSatish Balay 
1228c16cb8f2SBarry Smith   VecGetArray_Fast(xx,x);
1229c16cb8f2SBarry Smith   VecGetArray_Fast(yy,y);
1230c16cb8f2SBarry Smith   VecGetArray_Fast(zz,z);
1231f44d3a6dSSatish Balay 
1232f44d3a6dSSatish Balay   idx   = a->j;
1233f44d3a6dSSatish Balay   v     = a->a;
1234f44d3a6dSSatish Balay   ii    = a->i;
1235f44d3a6dSSatish Balay 
1236f44d3a6dSSatish Balay   for ( i=0; i<mbs; i++ ) {
1237f44d3a6dSSatish Balay     n  = ii[1] - ii[0]; ii++;
1238f44d3a6dSSatish Balay     sum1 = y[0]; sum2 = y[1]; sum3 = y[2]; sum4 = y[3];
1239f44d3a6dSSatish Balay     for ( j=0; j<n; j++ ) {
1240f44d3a6dSSatish Balay       xb = x + 4*(*idx++);
1241f44d3a6dSSatish Balay       x1 = xb[0]; x2 = xb[1]; x3 = xb[2]; x4 = xb[3];
1242f44d3a6dSSatish Balay       sum1 += v[0]*x1 + v[4]*x2 + v[8]*x3   + v[12]*x4;
1243f44d3a6dSSatish Balay       sum2 += v[1]*x1 + v[5]*x2 + v[9]*x3   + v[13]*x4;
1244f44d3a6dSSatish Balay       sum3 += v[2]*x1 + v[6]*x2 + v[10]*x3  + v[14]*x4;
1245f44d3a6dSSatish Balay       sum4 += v[3]*x1 + v[7]*x2 + v[11]*x3  + v[15]*x4;
1246f44d3a6dSSatish Balay       v += 16;
1247f44d3a6dSSatish Balay     }
1248f44d3a6dSSatish Balay     z[0] = sum1; z[1] = sum2; z[2] = sum3; z[3] = sum4;
1249f44d3a6dSSatish Balay     z += 4; y += 4;
1250f44d3a6dSSatish Balay   }
1251c16cb8f2SBarry Smith   VecRestoreArray_Fast(xx,x);
1252c16cb8f2SBarry Smith   VecRestoreArray_Fast(yy,y);
1253c16cb8f2SBarry Smith   VecRestoreArray_Fast(zz,z);
1254f44d3a6dSSatish Balay   PLogFlops(32*a->nz);
1255f44d3a6dSSatish Balay   return 0;
1256f44d3a6dSSatish Balay }
1257f44d3a6dSSatish Balay 
12585615d1e5SSatish Balay #undef __FUNC__
12595615d1e5SSatish Balay #define __FUNC__ "MatMultAdd_SeqBAIJ_5"
1260f44d3a6dSSatish Balay static int MatMultAdd_SeqBAIJ_5(Mat A,Vec xx,Vec yy,Vec zz)
1261f44d3a6dSSatish Balay {
1262f44d3a6dSSatish Balay   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
1263f44d3a6dSSatish Balay   register Scalar *x,*y,*z,*v,*xb,sum1,sum2,sum3,sum4,sum5;
1264f44d3a6dSSatish Balay   register Scalar x1,x2,x3,x4,x5;
1265c16cb8f2SBarry Smith   int             mbs=a->mbs,i,*idx,*ii,j,n;
1266f44d3a6dSSatish Balay 
1267c16cb8f2SBarry Smith   VecGetArray_Fast(xx,x);
1268c16cb8f2SBarry Smith   VecGetArray_Fast(yy,y);
1269c16cb8f2SBarry Smith   VecGetArray_Fast(zz,z);
1270f44d3a6dSSatish Balay 
1271f44d3a6dSSatish Balay   idx   = a->j;
1272f44d3a6dSSatish Balay   v     = a->a;
1273f44d3a6dSSatish Balay   ii    = a->i;
1274f44d3a6dSSatish Balay 
1275f44d3a6dSSatish Balay   for ( i=0; i<mbs; i++ ) {
1276f44d3a6dSSatish Balay     n  = ii[1] - ii[0]; ii++;
1277f44d3a6dSSatish Balay     sum1 = y[0]; sum2 = y[1]; sum3 = y[2]; sum4 = y[3]; sum5 = y[4];
1278f44d3a6dSSatish Balay     for ( j=0; j<n; j++ ) {
1279f44d3a6dSSatish Balay       xb = x + 5*(*idx++);
1280f44d3a6dSSatish Balay       x1 = xb[0]; x2 = xb[1]; x3 = xb[2]; x4 = xb[3]; x5 = xb[4];
1281f44d3a6dSSatish Balay       sum1 += v[0]*x1 + v[5]*x2 + v[10]*x3  + v[15]*x4 + v[20]*x5;
1282f44d3a6dSSatish Balay       sum2 += v[1]*x1 + v[6]*x2 + v[11]*x3  + v[16]*x4 + v[21]*x5;
1283f44d3a6dSSatish Balay       sum3 += v[2]*x1 + v[7]*x2 + v[12]*x3  + v[17]*x4 + v[22]*x5;
1284f44d3a6dSSatish Balay       sum4 += v[3]*x1 + v[8]*x2 + v[13]*x3  + v[18]*x4 + v[23]*x5;
1285f44d3a6dSSatish Balay       sum5 += v[4]*x1 + v[9]*x2 + v[14]*x3  + v[19]*x4 + v[24]*x5;
1286f44d3a6dSSatish Balay       v += 25;
1287f44d3a6dSSatish Balay     }
1288f44d3a6dSSatish Balay     z[0] = sum1; z[1] = sum2; z[2] = sum3; z[3] = sum4; z[4] = sum5;
1289f44d3a6dSSatish Balay     z += 5; y += 5;
1290f44d3a6dSSatish Balay   }
1291c16cb8f2SBarry Smith   VecRestoreArray_Fast(xx,x);
1292c16cb8f2SBarry Smith   VecRestoreArray_Fast(yy,y);
1293c16cb8f2SBarry Smith   VecRestoreArray_Fast(zz,z);
1294f44d3a6dSSatish Balay   PLogFlops(50*a->nz);
1295f44d3a6dSSatish Balay   return 0;
1296f44d3a6dSSatish Balay }
1297f44d3a6dSSatish Balay 
12985615d1e5SSatish Balay #undef __FUNC__
129948e9ddb2SSatish Balay #define __FUNC__ "MatMultAdd_SeqBAIJ_7"
130048e9ddb2SSatish Balay static int MatMultAdd_SeqBAIJ_7(Mat A,Vec xx,Vec yy,Vec zz)
130148e9ddb2SSatish Balay {
130248e9ddb2SSatish Balay   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
130348e9ddb2SSatish Balay   register Scalar *x,*y,*z,*v,*xb,sum1,sum2,sum3,sum4,sum5,sum6,sum7;
130448e9ddb2SSatish Balay   register Scalar x1,x2,x3,x4,x5,x6,x7;
130548e9ddb2SSatish Balay   int             mbs=a->mbs,i,*idx,*ii,j,n;
130648e9ddb2SSatish Balay 
130748e9ddb2SSatish Balay   VecGetArray_Fast(xx,x);
130848e9ddb2SSatish Balay   VecGetArray_Fast(yy,y);
130948e9ddb2SSatish Balay   VecGetArray_Fast(zz,z);
131048e9ddb2SSatish Balay 
131148e9ddb2SSatish Balay   idx   = a->j;
131248e9ddb2SSatish Balay   v     = a->a;
131348e9ddb2SSatish Balay   ii    = a->i;
131448e9ddb2SSatish Balay 
131548e9ddb2SSatish Balay   for ( i=0; i<mbs; i++ ) {
131648e9ddb2SSatish Balay     n  = ii[1] - ii[0]; ii++;
131748e9ddb2SSatish Balay     sum1 = y[0]; sum2 = y[1]; sum3 = y[2]; sum4 = y[3]; sum5 = y[4]; sum6 = y[5]; sum7 = y[6];
131848e9ddb2SSatish Balay     for ( j=0; j<n; j++ ) {
131948e9ddb2SSatish Balay       xb = x + 7*(*idx++);
132048e9ddb2SSatish Balay       x1 = xb[0]; x2 = xb[1]; x3 = xb[2]; x4 = xb[3]; x5 = xb[4]; x6 = xb[5]; x7 = xb[6];
132148e9ddb2SSatish Balay       sum1 += v[0]*x1 + v[7]*x2  + v[14]*x3  + v[21]*x4 + v[28]*x5 + v[35]*x6 + v[42]*x7;
132248e9ddb2SSatish Balay       sum2 += v[1]*x1 + v[8]*x2  + v[15]*x3  + v[22]*x4 + v[29]*x5 + v[36]*x6 + v[43]*x7;
132348e9ddb2SSatish Balay       sum3 += v[2]*x1 + v[9]*x2  + v[16]*x3  + v[23]*x4 + v[30]*x5 + v[37]*x6 + v[44]*x7;
132448e9ddb2SSatish Balay       sum4 += v[3]*x1 + v[10]*x2 + v[17]*x3  + v[24]*x4 + v[31]*x5 + v[38]*x6 + v[45]*x7;
132548e9ddb2SSatish Balay       sum5 += v[4]*x1 + v[11]*x2 + v[18]*x3  + v[25]*x4 + v[32]*x5 + v[39]*x6 + v[46]*x7;
132648e9ddb2SSatish Balay       sum6 += v[5]*x1 + v[12]*x2 + v[19]*x3  + v[26]*x4 + v[33]*x5 + v[40]*x6 + v[47]*x7;
132748e9ddb2SSatish Balay       sum7 += v[6]*x1 + v[13]*x2 + v[20]*x3  + v[27]*x4 + v[34]*x5 + v[41]*x6 + v[48]*x7;
132848e9ddb2SSatish Balay       v += 49;
132948e9ddb2SSatish Balay     }
133048e9ddb2SSatish Balay     z[0] = sum1; z[1] = sum2; z[2] = sum3; z[3] = sum4; z[4] = sum5; z[5] = sum6; z[6] = sum7;
133148e9ddb2SSatish Balay     z += 7; y += 7;
133248e9ddb2SSatish Balay   }
133348e9ddb2SSatish Balay   VecRestoreArray_Fast(xx,x);
133448e9ddb2SSatish Balay   VecRestoreArray_Fast(yy,y);
133548e9ddb2SSatish Balay   VecRestoreArray_Fast(zz,z);
133648e9ddb2SSatish Balay   PLogFlops(98*a->nz);
133748e9ddb2SSatish Balay   return 0;
133848e9ddb2SSatish Balay }
133948e9ddb2SSatish Balay 
134048e9ddb2SSatish Balay 
134148e9ddb2SSatish Balay #undef __FUNC__
13425615d1e5SSatish Balay #define __FUNC__ "MatMultAdd_SeqBAIJ_N"
1343f44d3a6dSSatish Balay static int MatMultAdd_SeqBAIJ_N(Mat A,Vec xx,Vec yy,Vec zz)
1344f44d3a6dSSatish Balay {
1345f44d3a6dSSatish Balay   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
1346f44d3a6dSSatish Balay   register Scalar *x,*z,*v,*xb;
1347f44d3a6dSSatish Balay   int             mbs=a->mbs,i,*idx,*ii,bs=a->bs,j,n,bs2=a->bs2,ierr;
1348f44d3a6dSSatish Balay   int             _One = 1,ncols,k; Scalar _DOne = 1.0, *work,*workt;
1349f44d3a6dSSatish Balay 
1350f44d3a6dSSatish Balay   if ( xx != yy) { ierr = VecCopy(yy,zz); CHKERRQ(ierr); }
1351f44d3a6dSSatish Balay 
1352c16cb8f2SBarry Smith   VecGetArray_Fast(xx,x);
1353c16cb8f2SBarry Smith   VecGetArray_Fast(zz,z);
1354f44d3a6dSSatish Balay 
1355f44d3a6dSSatish Balay   idx   = a->j;
1356f44d3a6dSSatish Balay   v     = a->a;
1357f44d3a6dSSatish Balay   ii    = a->i;
1358f44d3a6dSSatish Balay 
1359f44d3a6dSSatish Balay 
1360f44d3a6dSSatish Balay   if (!a->mult_work) {
1361f44d3a6dSSatish Balay     k = PetscMax(a->m,a->n);
1362f44d3a6dSSatish Balay     a->mult_work = (Scalar *) PetscMalloc(k*sizeof(Scalar));CHKPTRQ(a->mult_work);
1363f44d3a6dSSatish Balay   }
1364f44d3a6dSSatish Balay   work = a->mult_work;
1365f44d3a6dSSatish Balay   for ( i=0; i<mbs; i++ ) {
1366f44d3a6dSSatish Balay     n     = ii[1] - ii[0]; ii++;
1367f44d3a6dSSatish Balay     ncols = n*bs;
1368f44d3a6dSSatish Balay     workt = work;
1369f44d3a6dSSatish Balay     for ( j=0; j<n; j++ ) {
1370f44d3a6dSSatish Balay       xb = x + bs*(*idx++);
1371f44d3a6dSSatish Balay       for ( k=0; k<bs; k++ ) workt[k] = xb[k];
1372f44d3a6dSSatish Balay       workt += bs;
1373f44d3a6dSSatish Balay     }
1374f44d3a6dSSatish Balay     LAgemv_("N",&bs,&ncols,&_DOne,v,&bs,work,&_One,&_DOne,z,&_One);
1375f44d3a6dSSatish Balay     v += n*bs2;
1376f44d3a6dSSatish Balay     z += bs;
1377f44d3a6dSSatish Balay   }
1378c16cb8f2SBarry Smith   VecRestoreArray_Fast(xx,x);
1379c16cb8f2SBarry Smith   VecRestoreArray_Fast(zz,z);
1380f44d3a6dSSatish Balay   PLogFlops(2*a->nz*bs2 );
1381f44d3a6dSSatish Balay   return 0;
1382f44d3a6dSSatish Balay }
1383f44d3a6dSSatish Balay 
13845615d1e5SSatish Balay #undef __FUNC__
13855615d1e5SSatish Balay #define __FUNC__ "MatMultTrans_SeqBAIJ"
13868f6be9afSLois Curfman McInnes int MatMultTrans_SeqBAIJ(Mat A,Vec xx,Vec zz)
1387bb42667fSSatish Balay {
1388bb42667fSSatish Balay   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
13891a6a6d98SBarry Smith   Scalar          *xg,*zg,*zb;
1390bb42667fSSatish Balay   register Scalar *x,*z,*v,*xb,x1,x2,x3,x4,x5;
1391bb1453f0SSatish Balay   int             mbs=a->mbs,i,*idx,*ii,*ai=a->i,rval,N=a->n;
13929df24120SSatish Balay   int             bs=a->bs,j,n,bs2=a->bs2,*ib,ierr;
1393119a934aSSatish Balay 
1394119a934aSSatish Balay 
139590f02eecSBarry Smith   VecGetArray_Fast(xx,xg); x = xg;
139690f02eecSBarry Smith   VecGetArray_Fast(zz,zg); z = zg;
1397bb1453f0SSatish Balay   PetscMemzero(z,N*sizeof(Scalar));
1398bb42667fSSatish Balay 
1399119a934aSSatish Balay   idx   = a->j;
1400119a934aSSatish Balay   v     = a->a;
1401119a934aSSatish Balay   ii    = a->i;
1402119a934aSSatish Balay 
1403119a934aSSatish Balay   switch (bs) {
1404119a934aSSatish Balay   case 1:
1405119a934aSSatish Balay     for ( i=0; i<mbs; i++ ) {
1406119a934aSSatish Balay       n  = ii[1] - ii[0]; ii++;
1407119a934aSSatish Balay       xb = x + i; x1 = xb[0];
1408119a934aSSatish Balay       ib = idx + ai[i];
1409119a934aSSatish Balay       for ( j=0; j<n; j++ ) {
1410bb1453f0SSatish Balay         rval    = ib[j];
1411bb1453f0SSatish Balay         z[rval] += *v++ * x1;
1412119a934aSSatish Balay       }
1413119a934aSSatish Balay     }
1414119a934aSSatish Balay     break;
1415119a934aSSatish Balay   case 2:
1416119a934aSSatish Balay     for ( i=0; i<mbs; i++ ) {
1417119a934aSSatish Balay       n  = ii[1] - ii[0]; ii++;
1418119a934aSSatish Balay       xb = x + 2*i; x1 = xb[0]; x2 = xb[1];
1419119a934aSSatish Balay       ib = idx + ai[i];
1420119a934aSSatish Balay       for ( j=0; j<n; j++ ) {
1421119a934aSSatish Balay         rval      = ib[j]*2;
1422bb1453f0SSatish Balay         z[rval++] += v[0]*x1 + v[1]*x2;
1423bb1453f0SSatish Balay         z[rval++] += v[2]*x1 + v[3]*x2;
1424119a934aSSatish Balay         v += 4;
1425119a934aSSatish Balay       }
1426119a934aSSatish Balay     }
1427119a934aSSatish Balay     break;
1428119a934aSSatish Balay   case 3:
1429119a934aSSatish Balay     for ( i=0; i<mbs; i++ ) {
1430119a934aSSatish Balay       n  = ii[1] - ii[0]; ii++;
1431119a934aSSatish Balay       xb = x + 3*i; x1 = xb[0]; x2 = xb[1]; x3 = xb[2];
1432119a934aSSatish Balay       ib = idx + ai[i];
1433119a934aSSatish Balay       for ( j=0; j<n; j++ ) {
1434119a934aSSatish Balay         rval      = ib[j]*3;
1435bb1453f0SSatish Balay         z[rval++] += v[0]*x1 + v[1]*x2 + v[2]*x3;
1436bb1453f0SSatish Balay         z[rval++] += v[3]*x1 + v[4]*x2 + v[5]*x3;
1437bb1453f0SSatish Balay         z[rval++] += v[6]*x1 + v[7]*x2 + v[8]*x3;
1438119a934aSSatish Balay         v += 9;
1439119a934aSSatish Balay       }
1440119a934aSSatish Balay     }
1441119a934aSSatish Balay     break;
1442119a934aSSatish Balay   case 4:
1443119a934aSSatish Balay     for ( i=0; i<mbs; i++ ) {
1444119a934aSSatish Balay       n  = ii[1] - ii[0]; ii++;
1445119a934aSSatish Balay       xb = x + 4*i; x1 = xb[0]; x2 = xb[1]; x3 = xb[2]; x4 = xb[3];
1446119a934aSSatish Balay       ib = idx + ai[i];
1447119a934aSSatish Balay       for ( j=0; j<n; j++ ) {
1448119a934aSSatish Balay         rval      = ib[j]*4;
1449bb1453f0SSatish Balay         z[rval++] +=  v[0]*x1 +  v[1]*x2 +  v[2]*x3 +  v[3]*x4;
1450bb1453f0SSatish Balay         z[rval++] +=  v[4]*x1 +  v[5]*x2 +  v[6]*x3 +  v[7]*x4;
1451bb1453f0SSatish Balay         z[rval++] +=  v[8]*x1 +  v[9]*x2 + v[10]*x3 + v[11]*x4;
1452bb1453f0SSatish Balay         z[rval++] += v[12]*x1 + v[13]*x2 + v[14]*x3 + v[15]*x4;
1453119a934aSSatish Balay         v += 16;
1454119a934aSSatish Balay       }
1455119a934aSSatish Balay     }
1456119a934aSSatish Balay     break;
1457119a934aSSatish Balay   case 5:
1458119a934aSSatish Balay     for ( i=0; i<mbs; i++ ) {
1459119a934aSSatish Balay       n  = ii[1] - ii[0]; ii++;
1460119a934aSSatish Balay       xb = x + 5*i; x1 = xb[0]; x2 = xb[1]; x3 = xb[2];
1461119a934aSSatish Balay       x4 = xb[3];   x5 = xb[4];
1462119a934aSSatish Balay       ib = idx + ai[i];
1463119a934aSSatish Balay       for ( j=0; j<n; j++ ) {
1464119a934aSSatish Balay         rval      = ib[j]*5;
1465bb1453f0SSatish Balay         z[rval++] +=  v[0]*x1 +  v[1]*x2 +  v[2]*x3 +  v[3]*x4 +  v[4]*x5;
1466bb1453f0SSatish Balay         z[rval++] +=  v[5]*x1 +  v[6]*x2 +  v[7]*x3 +  v[8]*x4 +  v[9]*x5;
1467bb1453f0SSatish Balay         z[rval++] += v[10]*x1 + v[11]*x2 + v[12]*x3 + v[13]*x4 + v[14]*x5;
1468bb1453f0SSatish Balay         z[rval++] += v[15]*x1 + v[16]*x2 + v[17]*x3 + v[18]*x4 + v[19]*x5;
1469bb1453f0SSatish Balay         z[rval++] += v[20]*x1 + v[21]*x2 + v[22]*x3 + v[23]*x4 + v[24]*x5;
1470119a934aSSatish Balay         v += 25;
1471119a934aSSatish Balay       }
1472119a934aSSatish Balay     }
1473119a934aSSatish Balay     break;
1474119a934aSSatish Balay       /* block sizes larger then 5 by 5 are handled by BLAS */
1475119a934aSSatish Balay     default: {
1476119a934aSSatish Balay       int  _One = 1,ncols,k; Scalar _DOne = 1.0, *work,*workt;
1477119a934aSSatish Balay       if (!a->mult_work) {
14783b547af2SSatish Balay         k = PetscMax(a->m,a->n);
1479bb42667fSSatish Balay         a->mult_work = (Scalar *) PetscMalloc(k*sizeof(Scalar));
1480119a934aSSatish Balay         CHKPTRQ(a->mult_work);
1481119a934aSSatish Balay       }
1482119a934aSSatish Balay       work = a->mult_work;
1483119a934aSSatish Balay       for ( i=0; i<mbs; i++ ) {
1484119a934aSSatish Balay         n     = ii[1] - ii[0]; ii++;
1485119a934aSSatish Balay         ncols = n*bs;
1486119a934aSSatish Balay         PetscMemzero(work,ncols*sizeof(Scalar));
1487119a934aSSatish Balay         LAgemv_("T",&bs,&ncols,&_DOne,v,&bs,x,&_One,&_DOne,work,&_One);
1488119a934aSSatish Balay         v += n*bs2;
1489119a934aSSatish Balay         x += bs;
1490119a934aSSatish Balay         workt = work;
1491119a934aSSatish Balay         for ( j=0; j<n; j++ ) {
1492119a934aSSatish Balay           zb = z + bs*(*idx++);
1493bb1453f0SSatish Balay           for ( k=0; k<bs; k++ ) zb[k] += workt[k] ;
1494119a934aSSatish Balay           workt += bs;
1495119a934aSSatish Balay         }
1496119a934aSSatish Balay       }
1497119a934aSSatish Balay     }
1498119a934aSSatish Balay   }
14990419e6cdSSatish Balay   ierr = VecRestoreArray(xx,&xg); CHKERRQ(ierr);
15000419e6cdSSatish Balay   ierr = VecRestoreArray(zz,&zg); CHKERRQ(ierr);
1501faf6580fSSatish Balay   PLogFlops(2*a->nz*a->bs2 - a->n);
1502faf6580fSSatish Balay   return 0;
1503faf6580fSSatish Balay }
15041c351548SSatish Balay 
15055615d1e5SSatish Balay #undef __FUNC__
15065615d1e5SSatish Balay #define __FUNC__ "MatMultTransAdd_SeqBAIJ"
15078f6be9afSLois Curfman McInnes int MatMultTransAdd_SeqBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1508faf6580fSSatish Balay {
1509faf6580fSSatish Balay   Mat_SeqBAIJ     *a = (Mat_SeqBAIJ *) A->data;
1510faf6580fSSatish Balay   Scalar          *xg,*zg,*zb;
1511faf6580fSSatish Balay   register Scalar *x,*z,*v,*xb,x1,x2,x3,x4,x5;
1512faf6580fSSatish Balay   int             mbs=a->mbs,i,*idx,*ii,*ai=a->i,rval,N=a->n;
1513faf6580fSSatish Balay   int             bs=a->bs,j,n,bs2=a->bs2,*ib,ierr;
1514faf6580fSSatish Balay 
1515faf6580fSSatish Balay 
1516faf6580fSSatish Balay 
151790f02eecSBarry Smith   VecGetArray_Fast(xx,xg); x = xg;
151890f02eecSBarry Smith   VecGetArray_Fast(zz,zg); z = zg;
1519faf6580fSSatish Balay 
1520648c1d95SSatish Balay   if ( yy != zz ) { ierr = VecCopy(yy,zz); CHKERRQ(ierr); }
1521648c1d95SSatish Balay   else PetscMemzero(z,N*sizeof(Scalar));
1522648c1d95SSatish Balay 
1523faf6580fSSatish Balay 
1524faf6580fSSatish Balay   idx   = a->j;
1525faf6580fSSatish Balay   v     = a->a;
1526faf6580fSSatish Balay   ii    = a->i;
1527faf6580fSSatish Balay 
1528faf6580fSSatish Balay   switch (bs) {
1529faf6580fSSatish Balay   case 1:
1530faf6580fSSatish Balay     for ( i=0; i<mbs; i++ ) {
1531faf6580fSSatish Balay       n  = ii[1] - ii[0]; ii++;
1532faf6580fSSatish Balay       xb = x + i; x1 = xb[0];
1533faf6580fSSatish Balay       ib = idx + ai[i];
1534faf6580fSSatish Balay       for ( j=0; j<n; j++ ) {
1535faf6580fSSatish Balay         rval    = ib[j];
1536faf6580fSSatish Balay         z[rval] += *v++ * x1;
1537faf6580fSSatish Balay       }
1538faf6580fSSatish Balay     }
1539faf6580fSSatish Balay     break;
1540faf6580fSSatish Balay   case 2:
1541faf6580fSSatish Balay     for ( i=0; i<mbs; i++ ) {
1542faf6580fSSatish Balay       n  = ii[1] - ii[0]; ii++;
1543faf6580fSSatish Balay       xb = x + 2*i; x1 = xb[0]; x2 = xb[1];
1544faf6580fSSatish Balay       ib = idx + ai[i];
1545faf6580fSSatish Balay       for ( j=0; j<n; j++ ) {
1546faf6580fSSatish Balay         rval      = ib[j]*2;
1547faf6580fSSatish Balay         z[rval++] += v[0]*x1 + v[1]*x2;
1548faf6580fSSatish Balay         z[rval++] += v[2]*x1 + v[3]*x2;
1549faf6580fSSatish Balay         v += 4;
1550faf6580fSSatish Balay       }
1551faf6580fSSatish Balay     }
1552faf6580fSSatish Balay     break;
1553faf6580fSSatish Balay   case 3:
1554faf6580fSSatish Balay     for ( i=0; i<mbs; i++ ) {
1555faf6580fSSatish Balay       n  = ii[1] - ii[0]; ii++;
1556faf6580fSSatish Balay       xb = x + 3*i; x1 = xb[0]; x2 = xb[1]; x3 = xb[2];
1557faf6580fSSatish Balay       ib = idx + ai[i];
1558faf6580fSSatish Balay       for ( j=0; j<n; j++ ) {
1559faf6580fSSatish Balay         rval      = ib[j]*3;
1560faf6580fSSatish Balay         z[rval++] += v[0]*x1 + v[1]*x2 + v[2]*x3;
1561faf6580fSSatish Balay         z[rval++] += v[3]*x1 + v[4]*x2 + v[5]*x3;
1562faf6580fSSatish Balay         z[rval++] += v[6]*x1 + v[7]*x2 + v[8]*x3;
1563faf6580fSSatish Balay         v += 9;
1564faf6580fSSatish Balay       }
1565faf6580fSSatish Balay     }
1566faf6580fSSatish Balay     break;
1567faf6580fSSatish Balay   case 4:
1568faf6580fSSatish Balay     for ( i=0; i<mbs; i++ ) {
1569faf6580fSSatish Balay       n  = ii[1] - ii[0]; ii++;
1570faf6580fSSatish Balay       xb = x + 4*i; x1 = xb[0]; x2 = xb[1]; x3 = xb[2]; x4 = xb[3];
1571faf6580fSSatish Balay       ib = idx + ai[i];
1572faf6580fSSatish Balay       for ( j=0; j<n; j++ ) {
1573faf6580fSSatish Balay         rval      = ib[j]*4;
1574faf6580fSSatish Balay         z[rval++] +=  v[0]*x1 +  v[1]*x2 +  v[2]*x3 +  v[3]*x4;
1575faf6580fSSatish Balay         z[rval++] +=  v[4]*x1 +  v[5]*x2 +  v[6]*x3 +  v[7]*x4;
1576faf6580fSSatish Balay         z[rval++] +=  v[8]*x1 +  v[9]*x2 + v[10]*x3 + v[11]*x4;
1577faf6580fSSatish Balay         z[rval++] += v[12]*x1 + v[13]*x2 + v[14]*x3 + v[15]*x4;
1578faf6580fSSatish Balay         v += 16;
1579faf6580fSSatish Balay       }
1580faf6580fSSatish Balay     }
1581faf6580fSSatish Balay     break;
1582faf6580fSSatish Balay   case 5:
1583faf6580fSSatish Balay     for ( i=0; i<mbs; i++ ) {
1584faf6580fSSatish Balay       n  = ii[1] - ii[0]; ii++;
1585faf6580fSSatish Balay       xb = x + 5*i; x1 = xb[0]; x2 = xb[1]; x3 = xb[2];
1586faf6580fSSatish Balay       x4 = xb[3];   x5 = xb[4];
1587faf6580fSSatish Balay       ib = idx + ai[i];
1588faf6580fSSatish Balay       for ( j=0; j<n; j++ ) {
1589faf6580fSSatish Balay         rval      = ib[j]*5;
1590faf6580fSSatish Balay         z[rval++] +=  v[0]*x1 +  v[1]*x2 +  v[2]*x3 +  v[3]*x4 +  v[4]*x5;
1591faf6580fSSatish Balay         z[rval++] +=  v[5]*x1 +  v[6]*x2 +  v[7]*x3 +  v[8]*x4 +  v[9]*x5;
1592faf6580fSSatish Balay         z[rval++] += v[10]*x1 + v[11]*x2 + v[12]*x3 + v[13]*x4 + v[14]*x5;
1593faf6580fSSatish Balay         z[rval++] += v[15]*x1 + v[16]*x2 + v[17]*x3 + v[18]*x4 + v[19]*x5;
1594faf6580fSSatish Balay         z[rval++] += v[20]*x1 + v[21]*x2 + v[22]*x3 + v[23]*x4 + v[24]*x5;
1595faf6580fSSatish Balay         v += 25;
1596faf6580fSSatish Balay       }
1597faf6580fSSatish Balay     }
1598faf6580fSSatish Balay     break;
1599faf6580fSSatish Balay       /* block sizes larger then 5 by 5 are handled by BLAS */
1600faf6580fSSatish Balay     default: {
1601faf6580fSSatish Balay       int  _One = 1,ncols,k; Scalar _DOne = 1.0, *work,*workt;
1602faf6580fSSatish Balay       if (!a->mult_work) {
1603faf6580fSSatish Balay         k = PetscMax(a->m,a->n);
1604faf6580fSSatish Balay         a->mult_work = (Scalar *) PetscMalloc(k*sizeof(Scalar));
1605faf6580fSSatish Balay         CHKPTRQ(a->mult_work);
1606faf6580fSSatish Balay       }
1607faf6580fSSatish Balay       work = a->mult_work;
1608faf6580fSSatish Balay       for ( i=0; i<mbs; i++ ) {
1609faf6580fSSatish Balay         n     = ii[1] - ii[0]; ii++;
1610faf6580fSSatish Balay         ncols = n*bs;
1611faf6580fSSatish Balay         PetscMemzero(work,ncols*sizeof(Scalar));
1612faf6580fSSatish Balay         LAgemv_("T",&bs,&ncols,&_DOne,v,&bs,x,&_One,&_DOne,work,&_One);
1613faf6580fSSatish Balay         v += n*bs2;
1614faf6580fSSatish Balay         x += bs;
1615faf6580fSSatish Balay         workt = work;
1616faf6580fSSatish Balay         for ( j=0; j<n; j++ ) {
1617faf6580fSSatish Balay           zb = z + bs*(*idx++);
1618faf6580fSSatish Balay           for ( k=0; k<bs; k++ ) zb[k] += workt[k] ;
1619faf6580fSSatish Balay           workt += bs;
1620faf6580fSSatish Balay         }
1621faf6580fSSatish Balay       }
1622faf6580fSSatish Balay     }
1623faf6580fSSatish Balay   }
1624faf6580fSSatish Balay   ierr = VecRestoreArray(xx,&xg); CHKERRQ(ierr);
1625faf6580fSSatish Balay   ierr = VecRestoreArray(zz,&zg); CHKERRQ(ierr);
1626faf6580fSSatish Balay   PLogFlops(2*a->nz*a->bs2);
16272593348eSBarry Smith   return 0;
16282593348eSBarry Smith }
16292593348eSBarry Smith 
16305615d1e5SSatish Balay #undef __FUNC__
16315eea60f9SBarry Smith #define __FUNC__ "MatGetInfo_SeqBAIJ" /* ADIC Ignore */
16328f6be9afSLois Curfman McInnes int MatGetInfo_SeqBAIJ(Mat A,MatInfoType flag,MatInfo *info)
16332593348eSBarry Smith {
1634b6490206SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
16354e220ebcSLois Curfman McInnes 
16364e220ebcSLois Curfman McInnes   info->rows_global    = (double)a->m;
16374e220ebcSLois Curfman McInnes   info->columns_global = (double)a->n;
16384e220ebcSLois Curfman McInnes   info->rows_local     = (double)a->m;
16394e220ebcSLois Curfman McInnes   info->columns_local  = (double)a->n;
16404e220ebcSLois Curfman McInnes   info->block_size     = a->bs2;
16414e220ebcSLois Curfman McInnes   info->nz_allocated   = a->maxnz;
16424e220ebcSLois Curfman McInnes   info->nz_used        = a->bs2*a->nz;
16434e220ebcSLois Curfman McInnes   info->nz_unneeded    = (double)(info->nz_allocated - info->nz_used);
16444e220ebcSLois Curfman McInnes   /*  if (info->nz_unneeded != A->info.nz_unneeded)
16454e220ebcSLois Curfman McInnes     printf("space descrepancy: maxnz-nz = %d, nz_unneeded = %d\n",(int)info->nz_unneeded,(int)A->info.nz_unneeded); */
16464e220ebcSLois Curfman McInnes   info->assemblies   = A->num_ass;
16474e220ebcSLois Curfman McInnes   info->mallocs      = a->reallocs;
16484e220ebcSLois Curfman McInnes   info->memory       = A->mem;
16494e220ebcSLois Curfman McInnes   if (A->factor) {
16504e220ebcSLois Curfman McInnes     info->fill_ratio_given  = A->info.fill_ratio_given;
16514e220ebcSLois Curfman McInnes     info->fill_ratio_needed = A->info.fill_ratio_needed;
16524e220ebcSLois Curfman McInnes     info->factor_mallocs    = A->info.factor_mallocs;
16534e220ebcSLois Curfman McInnes   } else {
16544e220ebcSLois Curfman McInnes     info->fill_ratio_given  = 0;
16554e220ebcSLois Curfman McInnes     info->fill_ratio_needed = 0;
16564e220ebcSLois Curfman McInnes     info->factor_mallocs    = 0;
16574e220ebcSLois Curfman McInnes   }
16582593348eSBarry Smith   return 0;
16592593348eSBarry Smith }
16602593348eSBarry Smith 
16615615d1e5SSatish Balay #undef __FUNC__
16625615d1e5SSatish Balay #define __FUNC__ "MatEqual_SeqBAIJ"
16638f6be9afSLois Curfman McInnes int MatEqual_SeqBAIJ(Mat A,Mat B, PetscTruth* flg)
166491d316f6SSatish Balay {
166591d316f6SSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data, *b = (Mat_SeqBAIJ *)B->data;
166691d316f6SSatish Balay 
1667e3372554SBarry Smith   if (B->type !=MATSEQBAIJ)SETERRQ(1,0,"Matrices must be same type");
166891d316f6SSatish Balay 
166991d316f6SSatish Balay   /* If the  matrix/block dimensions are not equal, or no of nonzeros or shift */
167091d316f6SSatish Balay   if ((a->m != b->m) || (a->n !=b->n) || (a->bs != b->bs)||
1671a7c10996SSatish Balay       (a->nz != b->nz)) {
167291d316f6SSatish Balay     *flg = PETSC_FALSE; return 0;
167391d316f6SSatish Balay   }
167491d316f6SSatish Balay 
167591d316f6SSatish Balay   /* if the a->i are the same */
167691d316f6SSatish Balay   if (PetscMemcmp(a->i,b->i, (a->mbs+1)*sizeof(int))) {
167791d316f6SSatish Balay     *flg = PETSC_FALSE; return 0;
167891d316f6SSatish Balay   }
167991d316f6SSatish Balay 
168091d316f6SSatish Balay   /* if a->j are the same */
168191d316f6SSatish Balay   if (PetscMemcmp(a->j,b->j,(a->nz)*sizeof(int))) {
168291d316f6SSatish Balay     *flg = PETSC_FALSE; return 0;
168391d316f6SSatish Balay   }
168491d316f6SSatish Balay 
168591d316f6SSatish Balay   /* if a->a are the same */
168691d316f6SSatish Balay   if (PetscMemcmp(a->a, b->a,(a->nz)*(a->bs)*(a->bs)*sizeof(Scalar))) {
168791d316f6SSatish Balay     *flg = PETSC_FALSE; return 0;
168891d316f6SSatish Balay   }
168991d316f6SSatish Balay   *flg = PETSC_TRUE;
169091d316f6SSatish Balay   return 0;
169191d316f6SSatish Balay 
169291d316f6SSatish Balay }
169391d316f6SSatish Balay 
16945615d1e5SSatish Balay #undef __FUNC__
16955615d1e5SSatish Balay #define __FUNC__ "MatGetDiagonal_SeqBAIJ"
16968f6be9afSLois Curfman McInnes int MatGetDiagonal_SeqBAIJ(Mat A,Vec v)
169791d316f6SSatish Balay {
169891d316f6SSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
16997e67e3f9SSatish Balay   int         i,j,k,n,row,bs,*ai,*aj,ambs,bs2;
170017e48fc4SSatish Balay   Scalar      *x, zero = 0.0,*aa,*aa_j;
170117e48fc4SSatish Balay 
17020513a670SBarry Smith   if (A->factor) SETERRQ(1,0,"Not for factored matrix");
170317e48fc4SSatish Balay   bs   = a->bs;
170417e48fc4SSatish Balay   aa   = a->a;
170517e48fc4SSatish Balay   ai   = a->i;
170617e48fc4SSatish Balay   aj   = a->j;
170717e48fc4SSatish Balay   ambs = a->mbs;
17089df24120SSatish Balay   bs2  = a->bs2;
170991d316f6SSatish Balay 
171091d316f6SSatish Balay   VecSet(&zero,v);
171190f02eecSBarry Smith   VecGetArray_Fast(v,x); VecGetLocalSize_Fast(v,n);
1712e3372554SBarry Smith   if (n != a->m) SETERRQ(1,0,"Nonconforming matrix and vector");
171317e48fc4SSatish Balay   for ( i=0; i<ambs; i++ ) {
171417e48fc4SSatish Balay     for ( j=ai[i]; j<ai[i+1]; j++ ) {
171517e48fc4SSatish Balay       if (aj[j] == i) {
171617e48fc4SSatish Balay         row  = i*bs;
17177e67e3f9SSatish Balay         aa_j = aa+j*bs2;
17187e67e3f9SSatish Balay         for (k=0; k<bs2; k+=(bs+1),row++) x[row] = aa_j[k];
171991d316f6SSatish Balay         break;
172091d316f6SSatish Balay       }
172191d316f6SSatish Balay     }
172291d316f6SSatish Balay   }
172391d316f6SSatish Balay   return 0;
172491d316f6SSatish Balay }
172591d316f6SSatish Balay 
17265615d1e5SSatish Balay #undef __FUNC__
17275615d1e5SSatish Balay #define __FUNC__ "MatDiagonalScale_SeqBAIJ"
17288f6be9afSLois Curfman McInnes int MatDiagonalScale_SeqBAIJ(Mat A,Vec ll,Vec rr)
17299867e207SSatish Balay {
17309867e207SSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
17319867e207SSatish Balay   Scalar      *l,*r,x,*v,*aa,*li,*ri;
17327e67e3f9SSatish Balay   int         i,j,k,lm,rn,M,m,n,*ai,*aj,mbs,tmp,bs,bs2;
17339867e207SSatish Balay 
17349867e207SSatish Balay   ai  = a->i;
17359867e207SSatish Balay   aj  = a->j;
17369867e207SSatish Balay   aa  = a->a;
17379867e207SSatish Balay   m   = a->m;
17389867e207SSatish Balay   n   = a->n;
17399867e207SSatish Balay   bs  = a->bs;
17409867e207SSatish Balay   mbs = a->mbs;
17419df24120SSatish Balay   bs2 = a->bs2;
17429867e207SSatish Balay   if (ll) {
174390f02eecSBarry Smith     VecGetArray_Fast(ll,l); VecGetLocalSize_Fast(ll,lm);
1744e3372554SBarry Smith     if (lm != m) SETERRQ(1,0,"Left scaling vector wrong length");
17459867e207SSatish Balay     for ( i=0; i<mbs; i++ ) { /* for each block row */
17469867e207SSatish Balay       M  = ai[i+1] - ai[i];
17479867e207SSatish Balay       li = l + i*bs;
17487e67e3f9SSatish Balay       v  = aa + bs2*ai[i];
17499867e207SSatish Balay       for ( j=0; j<M; j++ ) { /* for each block */
17507e67e3f9SSatish Balay         for ( k=0; k<bs2; k++ ) {
17519867e207SSatish Balay           (*v++) *= li[k%bs];
17529867e207SSatish Balay         }
17539867e207SSatish Balay       }
17549867e207SSatish Balay     }
17559867e207SSatish Balay   }
17569867e207SSatish Balay 
17579867e207SSatish Balay   if (rr) {
175890f02eecSBarry Smith     VecGetArray_Fast(rr,r); VecGetLocalSize_Fast(rr,rn);
1759e3372554SBarry Smith     if (rn != n) SETERRQ(1,0,"Right scaling vector wrong length");
17609867e207SSatish Balay     for ( i=0; i<mbs; i++ ) { /* for each block row */
17619867e207SSatish Balay       M  = ai[i+1] - ai[i];
17627e67e3f9SSatish Balay       v  = aa + bs2*ai[i];
17639867e207SSatish Balay       for ( j=0; j<M; j++ ) { /* for each block */
17649867e207SSatish Balay         ri = r + bs*aj[ai[i]+j];
17659867e207SSatish Balay         for ( k=0; k<bs; k++ ) {
17669867e207SSatish Balay           x = ri[k];
17679867e207SSatish Balay           for ( tmp=0; tmp<bs; tmp++ ) (*v++) *= x;
17689867e207SSatish Balay         }
17699867e207SSatish Balay       }
17709867e207SSatish Balay     }
17719867e207SSatish Balay   }
17729867e207SSatish Balay   return 0;
17739867e207SSatish Balay }
17749867e207SSatish Balay 
17759867e207SSatish Balay 
1776b6490206SBarry Smith extern int MatLUFactorSymbolic_SeqBAIJ(Mat,IS,IS,double,Mat*);
1777b6490206SBarry Smith extern int MatLUFactor_SeqBAIJ(Mat,IS,IS,double);
17782a38ea04SSatish Balay extern int MatIncreaseOverlap_SeqBAIJ(Mat,int,IS*,int);
1779736121d4SSatish Balay extern int MatGetSubMatrix_SeqBAIJ(Mat,IS,IS,MatGetSubMatrixCall,Mat*);
1780736121d4SSatish Balay extern int MatGetSubMatrices_SeqBAIJ(Mat,int,IS*,IS*,MatGetSubMatrixCall,Mat**);
17811a6a6d98SBarry Smith 
17821a6a6d98SBarry Smith extern int MatSolve_SeqBAIJ_N(Mat,Vec,Vec);
17831a6a6d98SBarry Smith extern int MatSolve_SeqBAIJ_1(Mat,Vec,Vec);
17841a6a6d98SBarry Smith extern int MatSolve_SeqBAIJ_2(Mat,Vec,Vec);
17851a6a6d98SBarry Smith extern int MatSolve_SeqBAIJ_3(Mat,Vec,Vec);
17861a6a6d98SBarry Smith extern int MatSolve_SeqBAIJ_4(Mat,Vec,Vec);
17871a6a6d98SBarry Smith extern int MatSolve_SeqBAIJ_5(Mat,Vec,Vec);
178848e9ddb2SSatish Balay extern int MatSolve_SeqBAIJ_7(Mat,Vec,Vec);
17891a6a6d98SBarry Smith 
17907fc0212eSBarry Smith extern int MatLUFactorNumeric_SeqBAIJ_N(Mat,Mat*);
17917fc0212eSBarry Smith extern int MatLUFactorNumeric_SeqBAIJ_1(Mat,Mat*);
17927fc0212eSBarry Smith extern int MatLUFactorNumeric_SeqBAIJ_2(Mat,Mat*);
17937fc0212eSBarry Smith extern int MatLUFactorNumeric_SeqBAIJ_3(Mat,Mat*);
17947fc0212eSBarry Smith extern int MatLUFactorNumeric_SeqBAIJ_4(Mat,Mat*);
17957fc0212eSBarry Smith extern int MatLUFactorNumeric_SeqBAIJ_5(Mat,Mat*);
17962593348eSBarry Smith 
17975615d1e5SSatish Balay #undef __FUNC__
17985615d1e5SSatish Balay #define __FUNC__ "MatNorm_SeqBAIJ"
17998f6be9afSLois Curfman McInnes int MatNorm_SeqBAIJ(Mat A,NormType type,double *norm)
18002593348eSBarry Smith {
1801b6490206SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
18022593348eSBarry Smith   Scalar      *v = a->a;
18032593348eSBarry Smith   double      sum = 0.0;
18049df24120SSatish Balay   int         i,nz=a->nz,bs2=a->bs2;
18052593348eSBarry Smith 
18062593348eSBarry Smith   if (type == NORM_FROBENIUS) {
18070419e6cdSSatish Balay     for (i=0; i< bs2*nz; i++ ) {
18082593348eSBarry Smith #if defined(PETSC_COMPLEX)
18092593348eSBarry Smith       sum += real(conj(*v)*(*v)); v++;
18102593348eSBarry Smith #else
18112593348eSBarry Smith       sum += (*v)*(*v); v++;
18122593348eSBarry Smith #endif
18132593348eSBarry Smith     }
18142593348eSBarry Smith     *norm = sqrt(sum);
18152593348eSBarry Smith   }
18162593348eSBarry Smith   else {
1817e3372554SBarry Smith     SETERRQ(PETSC_ERR_SUP,0,"No support for this norm yet");
18182593348eSBarry Smith   }
18192593348eSBarry Smith   return 0;
18202593348eSBarry Smith }
18212593348eSBarry Smith 
18222593348eSBarry Smith /*
18232593348eSBarry Smith      note: This can only work for identity for row and col. It would
18242593348eSBarry Smith    be good to check this and otherwise generate an error.
18252593348eSBarry Smith */
18265615d1e5SSatish Balay #undef __FUNC__
18275615d1e5SSatish Balay #define __FUNC__ "MatILUFactor_SeqBAIJ"
18288f6be9afSLois Curfman McInnes int MatILUFactor_SeqBAIJ(Mat inA,IS row,IS col,double efill,int fill)
18292593348eSBarry Smith {
1830b6490206SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) inA->data;
18312593348eSBarry Smith   Mat         outA;
1832de6a44a3SBarry Smith   int         ierr;
18332593348eSBarry Smith 
1834e3372554SBarry Smith   if (fill != 0) SETERRQ(1,0,"Only fill=0 supported");
18352593348eSBarry Smith 
18362593348eSBarry Smith   outA          = inA;
18372593348eSBarry Smith   inA->factor   = FACTOR_LU;
18382593348eSBarry Smith   a->row        = row;
18392593348eSBarry Smith   a->col        = col;
18402593348eSBarry Smith 
1841*eed86810SBarry Smith   if (!a->solve_work) {
1842de6a44a3SBarry Smith     a->solve_work = (Scalar *) PetscMalloc((a->m+a->bs)*sizeof(Scalar));CHKPTRQ(a->solve_work);
1843*eed86810SBarry Smith     PLogObjectMemory(inA,(a->m+a->bs)*sizeof(Scalar));
1844*eed86810SBarry Smith   }
18452593348eSBarry Smith 
18462593348eSBarry Smith   if (!a->diag) {
1847b6490206SBarry Smith     ierr = MatMarkDiag_SeqBAIJ(inA); CHKERRQ(ierr);
18482593348eSBarry Smith   }
18497fc0212eSBarry Smith   ierr = MatLUFactorNumeric(inA,&outA); CHKERRQ(ierr);
18502593348eSBarry Smith   return 0;
18512593348eSBarry Smith }
18522593348eSBarry Smith 
18535615d1e5SSatish Balay #undef __FUNC__
18545615d1e5SSatish Balay #define __FUNC__ "MatScale_SeqBAIJ"
18558f6be9afSLois Curfman McInnes int MatScale_SeqBAIJ(Scalar *alpha,Mat inA)
18562593348eSBarry Smith {
1857b6490206SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) inA->data;
18589df24120SSatish Balay   int         one = 1, totalnz = a->bs2*a->nz;
1859b6490206SBarry Smith   BLscal_( &totalnz, alpha, a->a, &one );
1860b6490206SBarry Smith   PLogFlops(totalnz);
18612593348eSBarry Smith   return 0;
18622593348eSBarry Smith }
18632593348eSBarry Smith 
18645615d1e5SSatish Balay #undef __FUNC__
18655615d1e5SSatish Balay #define __FUNC__ "MatGetValues_SeqBAIJ"
18668f6be9afSLois Curfman McInnes int MatGetValues_SeqBAIJ(Mat A,int m,int *im,int n,int *in,Scalar *v)
18677e67e3f9SSatish Balay {
18687e67e3f9SSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) A->data;
18697e67e3f9SSatish Balay   int        *rp, k, low, high, t, row, nrow, i, col, l, *aj = a->j;
1870a7c10996SSatish Balay   int        *ai = a->i, *ailen = a->ilen;
18719df24120SSatish Balay   int        brow,bcol,ridx,cidx,bs=a->bs,bs2=a->bs2;
18727e67e3f9SSatish Balay   Scalar     *ap, *aa = a->a, zero = 0.0;
18737e67e3f9SSatish Balay 
18747e67e3f9SSatish Balay   for ( k=0; k<m; k++ ) { /* loop over rows */
18757e67e3f9SSatish Balay     row  = im[k]; brow = row/bs;
1876e3372554SBarry Smith     if (row < 0) SETERRQ(1,0,"Negative row");
1877e3372554SBarry Smith     if (row >= a->m) SETERRQ(1,0,"Row too large");
1878a7c10996SSatish Balay     rp   = aj + ai[brow] ; ap = aa + bs2*ai[brow] ;
18797e67e3f9SSatish Balay     nrow = ailen[brow];
18807e67e3f9SSatish Balay     for ( l=0; l<n; l++ ) { /* loop over columns */
1881e3372554SBarry Smith       if (in[l] < 0) SETERRQ(1,0,"Negative column");
1882e3372554SBarry Smith       if (in[l] >= a->n) SETERRQ(1,0,"Column too large");
1883a7c10996SSatish Balay       col  = in[l] ;
18847e67e3f9SSatish Balay       bcol = col/bs;
18857e67e3f9SSatish Balay       cidx = col%bs;
18867e67e3f9SSatish Balay       ridx = row%bs;
18877e67e3f9SSatish Balay       high = nrow;
18887e67e3f9SSatish Balay       low  = 0; /* assume unsorted */
18897e67e3f9SSatish Balay       while (high-low > 5) {
18907e67e3f9SSatish Balay         t = (low+high)/2;
18917e67e3f9SSatish Balay         if (rp[t] > bcol) high = t;
18927e67e3f9SSatish Balay         else             low  = t;
18937e67e3f9SSatish Balay       }
18947e67e3f9SSatish Balay       for ( i=low; i<high; i++ ) {
18957e67e3f9SSatish Balay         if (rp[i] > bcol) break;
18967e67e3f9SSatish Balay         if (rp[i] == bcol) {
18977e67e3f9SSatish Balay           *v++ = ap[bs2*i+bs*cidx+ridx];
18987e67e3f9SSatish Balay           goto finished;
18997e67e3f9SSatish Balay         }
19007e67e3f9SSatish Balay       }
19017e67e3f9SSatish Balay       *v++ = zero;
19027e67e3f9SSatish Balay       finished:;
19037e67e3f9SSatish Balay     }
19047e67e3f9SSatish Balay   }
19057e67e3f9SSatish Balay   return 0;
19067e67e3f9SSatish Balay }
19077e67e3f9SSatish Balay 
19085615d1e5SSatish Balay #undef __FUNC__
19095eea60f9SBarry Smith #define __FUNC__ "MatGetBlockSize_SeqBAIJ" /* ADIC Ignore */
19108f6be9afSLois Curfman McInnes int MatGetBlockSize_SeqBAIJ(Mat mat, int *bs)
19115a838052SSatish Balay {
19125a838052SSatish Balay   Mat_SeqBAIJ *baij = (Mat_SeqBAIJ *) mat->data;
19135a838052SSatish Balay   *bs = baij->bs;
19145a838052SSatish Balay   return 0;
19155a838052SSatish Balay }
19165a838052SSatish Balay 
1917d9b7c43dSSatish Balay /* idx should be of length atlease bs */
19185615d1e5SSatish Balay #undef __FUNC__
19195615d1e5SSatish Balay #define __FUNC__ "MatZeroRows_SeqBAIJ_Check_Block"
1920d9b7c43dSSatish Balay static int MatZeroRows_SeqBAIJ_Check_Block(int *idx, int bs, PetscTruth *flg)
1921d9b7c43dSSatish Balay {
1922d9b7c43dSSatish Balay   int i,row;
1923d9b7c43dSSatish Balay   row = idx[0];
1924d9b7c43dSSatish Balay   if (row%bs!=0) { *flg = PETSC_FALSE; return 0; }
1925d9b7c43dSSatish Balay 
1926d9b7c43dSSatish Balay   for ( i=1; i<bs; i++ ) {
1927d9b7c43dSSatish Balay     if (row+i != idx[i]) { *flg = PETSC_FALSE; return 0; }
1928d9b7c43dSSatish Balay   }
1929d9b7c43dSSatish Balay   *flg = PETSC_TRUE;
1930d9b7c43dSSatish Balay   return 0;
1931d9b7c43dSSatish Balay }
1932d9b7c43dSSatish Balay 
19335615d1e5SSatish Balay #undef __FUNC__
19345615d1e5SSatish Balay #define __FUNC__ "MatZeroRows_SeqBAIJ"
19358f6be9afSLois Curfman McInnes int MatZeroRows_SeqBAIJ(Mat A,IS is, Scalar *diag)
1936d9b7c43dSSatish Balay {
1937d9b7c43dSSatish Balay   Mat_SeqBAIJ *baij=(Mat_SeqBAIJ*)A->data;
1938d9b7c43dSSatish Balay   IS          is_local;
1939d9b7c43dSSatish Balay   int         ierr,i,j,count,m=baij->m,is_n,*is_idx,*rows,bs=baij->bs,bs2=baij->bs2;
1940d9b7c43dSSatish Balay   PetscTruth  flg;
1941d9b7c43dSSatish Balay   Scalar      zero = 0.0,*aa;
1942d9b7c43dSSatish Balay 
1943d9b7c43dSSatish Balay   /* Make a copy of the IS and  sort it */
1944d9b7c43dSSatish Balay   ierr = ISGetSize(is,&is_n);CHKERRQ(ierr);
1945d9b7c43dSSatish Balay   ierr = ISGetIndices(is,&is_idx);CHKERRQ(ierr);
1946537820f0SBarry Smith   ierr = ISCreateGeneral(A->comm,is_n,is_idx,&is_local); CHKERRQ(ierr);
1947d9b7c43dSSatish Balay   ierr = ISSort(is_local); CHKERRQ(ierr);
1948d9b7c43dSSatish Balay   ierr = ISGetIndices(is_local,&rows); CHKERRQ(ierr);
1949d9b7c43dSSatish Balay 
1950d9b7c43dSSatish Balay   i = 0;
1951d9b7c43dSSatish Balay   while (i < is_n) {
1952e3372554SBarry Smith     if (rows[i]<0 || rows[i]>m) SETERRQ(1,0,"row out of range");
1953d9b7c43dSSatish Balay     flg = PETSC_FALSE;
1954d9b7c43dSSatish Balay     if (i+bs <= is_n) {ierr = MatZeroRows_SeqBAIJ_Check_Block(rows+i,bs,&flg); CHKERRQ(ierr); }
1955d9b7c43dSSatish Balay     if (flg) { /* There exists a block of rows to be Zerowed */
1956d9b7c43dSSatish Balay       baij->ilen[rows[i]/bs] = 0;
1957d9b7c43dSSatish Balay       i += bs;
1958d9b7c43dSSatish Balay     } else { /* Zero out only the requested row */
1959d9b7c43dSSatish Balay       count = (baij->i[rows[i]/bs +1] - baij->i[rows[i]/bs])*bs;
1960d9b7c43dSSatish Balay       aa    = baij->a + baij->i[rows[i]/bs]*bs2 + (rows[i]%bs);
1961d9b7c43dSSatish Balay       for ( j=0; j<count; j++ ) {
1962d9b7c43dSSatish Balay         aa[0] = zero;
1963d9b7c43dSSatish Balay         aa+=bs;
1964d9b7c43dSSatish Balay       }
1965d9b7c43dSSatish Balay       i++;
1966d9b7c43dSSatish Balay     }
1967d9b7c43dSSatish Balay   }
1968d9b7c43dSSatish Balay   if (diag) {
1969d9b7c43dSSatish Balay     for ( j=0; j<is_n; j++ ) {
1970d9b7c43dSSatish Balay       ierr = (*A->ops.setvalues)(A,1,rows+j,1,rows+j,diag,INSERT_VALUES);CHKERRQ(ierr);
1971d9b7c43dSSatish Balay     }
1972d9b7c43dSSatish Balay   }
1973d9b7c43dSSatish Balay   ierr = ISRestoreIndices(is,&is_idx); CHKERRQ(ierr);
1974d9b7c43dSSatish Balay   ierr = ISRestoreIndices(is_local,&rows); CHKERRQ(ierr);
1975d9b7c43dSSatish Balay   ierr = ISDestroy(is_local); CHKERRQ(ierr);
19769a8dea36SBarry Smith   ierr = MatAssemblyEnd_SeqBAIJ(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
1977d9b7c43dSSatish Balay 
1978d9b7c43dSSatish Balay   return 0;
1979d9b7c43dSSatish Balay }
19801c351548SSatish Balay 
19815615d1e5SSatish Balay #undef __FUNC__
19825eea60f9SBarry Smith #define __FUNC__ "MatPrintHelp_SeqBAIJ" /* ADIC Ignore */
1983ba4ca20aSSatish Balay int MatPrintHelp_SeqBAIJ(Mat A)
1984ba4ca20aSSatish Balay {
1985ba4ca20aSSatish Balay   static int called = 0;
1986ba4ca20aSSatish Balay   MPI_Comm   comm = A->comm;
1987ba4ca20aSSatish Balay 
1988ba4ca20aSSatish Balay   if (called) return 0; else called = 1;
1989ba4ca20aSSatish Balay   PetscPrintf(comm," Options for MATSEQBAIJ and MATMPIBAIJ matrix formats (the defaults):\n");
1990ba4ca20aSSatish Balay   PetscPrintf(comm,"  -mat_block_size <block_size>\n");
1991ba4ca20aSSatish Balay   return 0;
1992ba4ca20aSSatish Balay }
1993d9b7c43dSSatish Balay 
19942593348eSBarry Smith /* -------------------------------------------------------------------*/
1995cd0e1443SSatish Balay static struct _MatOps MatOps = {MatSetValues_SeqBAIJ,
19969867e207SSatish Balay        MatGetRow_SeqBAIJ,MatRestoreRow_SeqBAIJ,
1997f44d3a6dSSatish Balay        MatMult_SeqBAIJ_N,MatMultAdd_SeqBAIJ_N,
1998faf6580fSSatish Balay        MatMultTrans_SeqBAIJ,MatMultTransAdd_SeqBAIJ,
19991a6a6d98SBarry Smith        MatSolve_SeqBAIJ_N,0,
2000b6490206SBarry Smith        0,0,
2001de6a44a3SBarry Smith        MatLUFactor_SeqBAIJ,0,
2002b6490206SBarry Smith        0,
2003f2501298SSatish Balay        MatTranspose_SeqBAIJ,
200417e48fc4SSatish Balay        MatGetInfo_SeqBAIJ,MatEqual_SeqBAIJ,
20059867e207SSatish Balay        MatGetDiagonal_SeqBAIJ,MatDiagonalScale_SeqBAIJ,MatNorm_SeqBAIJ,
2006584200bdSSatish Balay        0,MatAssemblyEnd_SeqBAIJ,
2007b6490206SBarry Smith        0,
2008d9b7c43dSSatish Balay        MatSetOption_SeqBAIJ,MatZeroEntries_SeqBAIJ,MatZeroRows_SeqBAIJ,
20097fc0212eSBarry Smith        MatLUFactorSymbolic_SeqBAIJ,MatLUFactorNumeric_SeqBAIJ_N,0,0,
2010b6490206SBarry Smith        MatGetSize_SeqBAIJ,MatGetSize_SeqBAIJ,MatGetOwnershipRange_SeqBAIJ,
2011de6a44a3SBarry Smith        MatILUFactorSymbolic_SeqBAIJ,0,
2012d402145bSBarry Smith        0,0,
2013b6490206SBarry Smith        MatConvertSameType_SeqBAIJ,0,0,
2014b6490206SBarry Smith        MatILUFactor_SeqBAIJ,0,0,
2015af015674SSatish Balay        MatGetSubMatrices_SeqBAIJ,MatIncreaseOverlap_SeqBAIJ,
20167e67e3f9SSatish Balay        MatGetValues_SeqBAIJ,0,
2017ba4ca20aSSatish Balay        MatPrintHelp_SeqBAIJ,MatScale_SeqBAIJ,
20183b2fbd54SBarry Smith        0,0,0,MatGetBlockSize_SeqBAIJ,
20193b2fbd54SBarry Smith        MatGetRowIJ_SeqBAIJ,
202092c4ed94SBarry Smith        MatRestoreRowIJ_SeqBAIJ,
202192c4ed94SBarry Smith        0,0,0,0,0,0,
202292c4ed94SBarry Smith        MatSetValuesBlocked_SeqBAIJ};
20232593348eSBarry Smith 
20245615d1e5SSatish Balay #undef __FUNC__
20255615d1e5SSatish Balay #define __FUNC__ "MatCreateSeqBAIJ"
20262593348eSBarry Smith /*@C
202744cd7ae7SLois Curfman McInnes    MatCreateSeqBAIJ - Creates a sparse matrix in block AIJ (block
202844cd7ae7SLois Curfman McInnes    compressed row) format.  For good matrix assembly performance the
202944cd7ae7SLois Curfman McInnes    user should preallocate the matrix storage by setting the parameter nz
20302bd5e0b2SLois Curfman McInnes    (or the array nzz).  By setting these parameters accurately, performance
20312bd5e0b2SLois Curfman McInnes    during matrix assembly can be increased by more than a factor of 50.
20322593348eSBarry Smith 
20332593348eSBarry Smith    Input Parameters:
2034029af93fSBarry Smith .  comm - MPI communicator, set to PETSC_COMM_SELF
2035b6490206SBarry Smith .  bs - size of block
20362593348eSBarry Smith .  m - number of rows
20372593348eSBarry Smith .  n - number of columns
2038b6490206SBarry Smith .  nz - number of block nonzeros per block row (same for all rows)
20392bd5e0b2SLois Curfman McInnes .  nzz - array containing the number of block nonzeros in the various block rows
20402bd5e0b2SLois Curfman McInnes          (possibly different for each block row) or PETSC_NULL
20412593348eSBarry Smith 
20422593348eSBarry Smith    Output Parameter:
20432593348eSBarry Smith .  A - the matrix
20442593348eSBarry Smith 
20450513a670SBarry Smith    Options Database Keys:
20460513a670SBarry Smith $    -mat_no_unroll - uses code that does not unroll the loops in the
20470513a670SBarry Smith $                     block calculations (much solver)
20480513a670SBarry Smith $    -mat_block_size - size of the blocks to use
20490513a670SBarry Smith 
20502593348eSBarry Smith    Notes:
205144cd7ae7SLois Curfman McInnes    The block AIJ format is fully compatible with standard Fortran 77
20522593348eSBarry Smith    storage.  That is, the stored row and column indices can begin at
205344cd7ae7SLois Curfman McInnes    either one (as in Fortran) or zero.  See the users' manual for details.
20542593348eSBarry Smith 
20552593348eSBarry Smith    Specify the preallocated storage with either nz or nnz (not both).
20562593348eSBarry Smith    Set nz=PETSC_DEFAULT and nnz=PETSC_NULL for PETSc to control dynamic memory
20572593348eSBarry Smith    allocation.  For additional details, see the users manual chapter on
20586da5968aSLois Curfman McInnes    matrices.
20592593348eSBarry Smith 
206044cd7ae7SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues()
20612593348eSBarry Smith @*/
2062b6490206SBarry Smith int MatCreateSeqBAIJ(MPI_Comm comm,int bs,int m,int n,int nz,int *nnz, Mat *A)
20632593348eSBarry Smith {
20642593348eSBarry Smith   Mat         B;
2065b6490206SBarry Smith   Mat_SeqBAIJ *b;
20663b2fbd54SBarry Smith   int         i,len,ierr,flg,mbs=m/bs,nbs=n/bs,bs2=bs*bs,size;
20673b2fbd54SBarry Smith 
20683b2fbd54SBarry Smith   MPI_Comm_size(comm,&size);
2069e3372554SBarry Smith   if (size > 1) SETERRQ(1,0,"Comm must be of size 1");
2070b6490206SBarry Smith 
20710513a670SBarry Smith   ierr = OptionsGetInt(PETSC_NULL,"-mat_block_size",&bs,&flg);CHKERRQ(ierr);
20720513a670SBarry Smith 
2073f2501298SSatish Balay   if (mbs*bs!=m || nbs*bs!=n)
2074e3372554SBarry Smith     SETERRQ(1,0,"Number rows, cols must be divisible by blocksize");
20752593348eSBarry Smith 
20762593348eSBarry Smith   *A = 0;
2077f09e8eb9SSatish Balay   PetscHeaderCreate(B,_p_Mat,MAT_COOKIE,MATSEQBAIJ,comm);
20782593348eSBarry Smith   PLogObjectCreate(B);
2079b6490206SBarry Smith   B->data = (void *) (b = PetscNew(Mat_SeqBAIJ)); CHKPTRQ(b);
208044cd7ae7SLois Curfman McInnes   PetscMemzero(b,sizeof(Mat_SeqBAIJ));
20812593348eSBarry Smith   PetscMemcpy(&B->ops,&MatOps,sizeof(struct _MatOps));
20821a6a6d98SBarry Smith   ierr = OptionsHasName(PETSC_NULL,"-mat_no_unroll",&flg); CHKERRQ(ierr);
20831a6a6d98SBarry Smith   if (!flg) {
20847fc0212eSBarry Smith     switch (bs) {
20857fc0212eSBarry Smith     case 1:
20867fc0212eSBarry Smith       B->ops.lufactornumeric = MatLUFactorNumeric_SeqBAIJ_1;
20871a6a6d98SBarry Smith       B->ops.solve           = MatSolve_SeqBAIJ_1;
208839b95ed1SBarry Smith       B->ops.mult            = MatMult_SeqBAIJ_1;
2089f44d3a6dSSatish Balay       B->ops.multadd         = MatMultAdd_SeqBAIJ_1;
20907fc0212eSBarry Smith       break;
20914eeb42bcSBarry Smith     case 2:
20924eeb42bcSBarry Smith       B->ops.lufactornumeric = MatLUFactorNumeric_SeqBAIJ_2;
20931a6a6d98SBarry Smith       B->ops.solve           = MatSolve_SeqBAIJ_2;
209439b95ed1SBarry Smith       B->ops.mult            = MatMult_SeqBAIJ_2;
2095f44d3a6dSSatish Balay       B->ops.multadd         = MatMultAdd_SeqBAIJ_2;
20966d84be18SBarry Smith       break;
2097f327dd97SBarry Smith     case 3:
2098f327dd97SBarry Smith       B->ops.lufactornumeric = MatLUFactorNumeric_SeqBAIJ_3;
20991a6a6d98SBarry Smith       B->ops.solve           = MatSolve_SeqBAIJ_3;
210039b95ed1SBarry Smith       B->ops.mult            = MatMult_SeqBAIJ_3;
2101f44d3a6dSSatish Balay       B->ops.multadd         = MatMultAdd_SeqBAIJ_3;
21024eeb42bcSBarry Smith       break;
21036d84be18SBarry Smith     case 4:
21046d84be18SBarry Smith       B->ops.lufactornumeric = MatLUFactorNumeric_SeqBAIJ_4;
21051a6a6d98SBarry Smith       B->ops.solve           = MatSolve_SeqBAIJ_4;
210639b95ed1SBarry Smith       B->ops.mult            = MatMult_SeqBAIJ_4;
2107f44d3a6dSSatish Balay       B->ops.multadd         = MatMultAdd_SeqBAIJ_4;
21086d84be18SBarry Smith       break;
21096d84be18SBarry Smith     case 5:
21106d84be18SBarry Smith       B->ops.lufactornumeric = MatLUFactorNumeric_SeqBAIJ_5;
21111a6a6d98SBarry Smith       B->ops.solve           = MatSolve_SeqBAIJ_5;
211239b95ed1SBarry Smith       B->ops.mult            = MatMult_SeqBAIJ_5;
2113f44d3a6dSSatish Balay       B->ops.multadd         = MatMultAdd_SeqBAIJ_5;
21146d84be18SBarry Smith       break;
211548e9ddb2SSatish Balay     case 7:
211648e9ddb2SSatish Balay       B->ops.mult            = MatMult_SeqBAIJ_7;
211748e9ddb2SSatish Balay       B->ops.solve           = MatSolve_SeqBAIJ_7;
211848e9ddb2SSatish Balay       B->ops.multadd         = MatMultAdd_SeqBAIJ_7;
211948e9ddb2SSatish Balay       break;
21207fc0212eSBarry Smith     }
21211a6a6d98SBarry Smith   }
2122b6490206SBarry Smith   B->destroy          = MatDestroy_SeqBAIJ;
2123b6490206SBarry Smith   B->view             = MatView_SeqBAIJ;
21242593348eSBarry Smith   B->factor           = 0;
21252593348eSBarry Smith   B->lupivotthreshold = 1.0;
212690f02eecSBarry Smith   B->mapping          = 0;
21272593348eSBarry Smith   b->row              = 0;
21282593348eSBarry Smith   b->col              = 0;
21292593348eSBarry Smith   b->reallocs         = 0;
21302593348eSBarry Smith 
213144cd7ae7SLois Curfman McInnes   b->m       = m; B->m = m; B->M = m;
213244cd7ae7SLois Curfman McInnes   b->n       = n; B->n = n; B->N = n;
2133b6490206SBarry Smith   b->mbs     = mbs;
2134f2501298SSatish Balay   b->nbs     = nbs;
2135b6490206SBarry Smith   b->imax    = (int *) PetscMalloc( (mbs+1)*sizeof(int) ); CHKPTRQ(b->imax);
21362593348eSBarry Smith   if (nnz == PETSC_NULL) {
2137119a934aSSatish Balay     if (nz == PETSC_DEFAULT) nz = 5;
21382593348eSBarry Smith     else if (nz <= 0)        nz = 1;
2139b6490206SBarry Smith     for ( i=0; i<mbs; i++ ) b->imax[i] = nz;
2140b6490206SBarry Smith     nz = nz*mbs;
21412593348eSBarry Smith   }
21422593348eSBarry Smith   else {
21432593348eSBarry Smith     nz = 0;
2144b6490206SBarry Smith     for ( i=0; i<mbs; i++ ) {b->imax[i] = nnz[i]; nz += nnz[i];}
21452593348eSBarry Smith   }
21462593348eSBarry Smith 
21472593348eSBarry Smith   /* allocate the matrix space */
21487e67e3f9SSatish Balay   len   = nz*sizeof(int) + nz*bs2*sizeof(Scalar) + (b->m+1)*sizeof(int);
21492593348eSBarry Smith   b->a  = (Scalar *) PetscMalloc( len ); CHKPTRQ(b->a);
21507e67e3f9SSatish Balay   PetscMemzero(b->a,nz*bs2*sizeof(Scalar));
21517e67e3f9SSatish Balay   b->j  = (int *) (b->a + nz*bs2);
21522593348eSBarry Smith   PetscMemzero(b->j,nz*sizeof(int));
21532593348eSBarry Smith   b->i  = b->j + nz;
21542593348eSBarry Smith   b->singlemalloc = 1;
21552593348eSBarry Smith 
2156de6a44a3SBarry Smith   b->i[0] = 0;
2157b6490206SBarry Smith   for (i=1; i<mbs+1; i++) {
21582593348eSBarry Smith     b->i[i] = b->i[i-1] + b->imax[i-1];
21592593348eSBarry Smith   }
21602593348eSBarry Smith 
2161b6490206SBarry Smith   /* b->ilen will count nonzeros in each block row so far. */
2162b6490206SBarry Smith   b->ilen = (int *) PetscMalloc((mbs+1)*sizeof(int));
2163f09e8eb9SSatish Balay   PLogObjectMemory(B,len+2*(mbs+1)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_SeqBAIJ));
2164b6490206SBarry Smith   for ( i=0; i<mbs; i++ ) { b->ilen[i] = 0;}
21652593348eSBarry Smith 
2166b6490206SBarry Smith   b->bs               = bs;
21679df24120SSatish Balay   b->bs2              = bs2;
2168b6490206SBarry Smith   b->mbs              = mbs;
21692593348eSBarry Smith   b->nz               = 0;
217018e7b8e4SLois Curfman McInnes   b->maxnz            = nz*bs2;
21712593348eSBarry Smith   b->sorted           = 0;
21722593348eSBarry Smith   b->roworiented      = 1;
21732593348eSBarry Smith   b->nonew            = 0;
21742593348eSBarry Smith   b->diag             = 0;
21752593348eSBarry Smith   b->solve_work       = 0;
2176de6a44a3SBarry Smith   b->mult_work        = 0;
21772593348eSBarry Smith   b->spptr            = 0;
21784e220ebcSLois Curfman McInnes   B->info.nz_unneeded = (double)b->maxnz;
21794e220ebcSLois Curfman McInnes 
21802593348eSBarry Smith   *A = B;
21812593348eSBarry Smith   ierr = OptionsHasName(PETSC_NULL,"-help", &flg); CHKERRQ(ierr);
21822593348eSBarry Smith   if (flg) {ierr = MatPrintHelp(B); CHKERRQ(ierr); }
21832593348eSBarry Smith   return 0;
21842593348eSBarry Smith }
21852593348eSBarry Smith 
21865615d1e5SSatish Balay #undef __FUNC__
21875615d1e5SSatish Balay #define __FUNC__ "MatConvertSameType_SeqBAIJ"
2188b6490206SBarry Smith int MatConvertSameType_SeqBAIJ(Mat A,Mat *B,int cpvalues)
21892593348eSBarry Smith {
21902593348eSBarry Smith   Mat         C;
2191b6490206SBarry Smith   Mat_SeqBAIJ *c,*a = (Mat_SeqBAIJ *) A->data;
21929df24120SSatish Balay   int         i,len, mbs = a->mbs,nz = a->nz,bs2 =a->bs2;
2193de6a44a3SBarry Smith 
2194e3372554SBarry Smith   if (a->i[mbs] != nz) SETERRQ(1,0,"Corrupt matrix");
21952593348eSBarry Smith 
21962593348eSBarry Smith   *B = 0;
2197f09e8eb9SSatish Balay   PetscHeaderCreate(C,_p_Mat,MAT_COOKIE,MATSEQBAIJ,A->comm);
21982593348eSBarry Smith   PLogObjectCreate(C);
2199b6490206SBarry Smith   C->data       = (void *) (c = PetscNew(Mat_SeqBAIJ)); CHKPTRQ(c);
22002593348eSBarry Smith   PetscMemcpy(&C->ops,&A->ops,sizeof(struct _MatOps));
2201b6490206SBarry Smith   C->destroy    = MatDestroy_SeqBAIJ;
2202b6490206SBarry Smith   C->view       = MatView_SeqBAIJ;
22032593348eSBarry Smith   C->factor     = A->factor;
22042593348eSBarry Smith   c->row        = 0;
22052593348eSBarry Smith   c->col        = 0;
22062593348eSBarry Smith   C->assembled  = PETSC_TRUE;
22072593348eSBarry Smith 
220844cd7ae7SLois Curfman McInnes   c->m = C->m   = a->m;
220944cd7ae7SLois Curfman McInnes   c->n = C->n   = a->n;
221044cd7ae7SLois Curfman McInnes   C->M          = a->m;
221144cd7ae7SLois Curfman McInnes   C->N          = a->n;
221244cd7ae7SLois Curfman McInnes 
2213b6490206SBarry Smith   c->bs         = a->bs;
22149df24120SSatish Balay   c->bs2        = a->bs2;
2215b6490206SBarry Smith   c->mbs        = a->mbs;
2216b6490206SBarry Smith   c->nbs        = a->nbs;
22172593348eSBarry Smith 
2218b6490206SBarry Smith   c->imax       = (int *) PetscMalloc((mbs+1)*sizeof(int)); CHKPTRQ(c->imax);
2219b6490206SBarry Smith   c->ilen       = (int *) PetscMalloc((mbs+1)*sizeof(int)); CHKPTRQ(c->ilen);
2220b6490206SBarry Smith   for ( i=0; i<mbs; i++ ) {
22212593348eSBarry Smith     c->imax[i] = a->imax[i];
22222593348eSBarry Smith     c->ilen[i] = a->ilen[i];
22232593348eSBarry Smith   }
22242593348eSBarry Smith 
22252593348eSBarry Smith   /* allocate the matrix space */
22262593348eSBarry Smith   c->singlemalloc = 1;
22277e67e3f9SSatish Balay   len   = (mbs+1)*sizeof(int) + nz*(bs2*sizeof(Scalar) + sizeof(int));
22282593348eSBarry Smith   c->a  = (Scalar *) PetscMalloc( len ); CHKPTRQ(c->a);
22297e67e3f9SSatish Balay   c->j  = (int *) (c->a + nz*bs2);
2230de6a44a3SBarry Smith   c->i  = c->j + nz;
2231b6490206SBarry Smith   PetscMemcpy(c->i,a->i,(mbs+1)*sizeof(int));
2232b6490206SBarry Smith   if (mbs > 0) {
2233de6a44a3SBarry Smith     PetscMemcpy(c->j,a->j,nz*sizeof(int));
22342593348eSBarry Smith     if (cpvalues == COPY_VALUES) {
22357e67e3f9SSatish Balay       PetscMemcpy(c->a,a->a,bs2*nz*sizeof(Scalar));
22362593348eSBarry Smith     }
22372593348eSBarry Smith   }
22382593348eSBarry Smith 
2239f09e8eb9SSatish Balay   PLogObjectMemory(C,len+2*(mbs+1)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_SeqBAIJ));
22402593348eSBarry Smith   c->sorted      = a->sorted;
22412593348eSBarry Smith   c->roworiented = a->roworiented;
22422593348eSBarry Smith   c->nonew       = a->nonew;
22432593348eSBarry Smith 
22442593348eSBarry Smith   if (a->diag) {
2245b6490206SBarry Smith     c->diag = (int *) PetscMalloc( (mbs+1)*sizeof(int) ); CHKPTRQ(c->diag);
2246b6490206SBarry Smith     PLogObjectMemory(C,(mbs+1)*sizeof(int));
2247b6490206SBarry Smith     for ( i=0; i<mbs; i++ ) {
22482593348eSBarry Smith       c->diag[i] = a->diag[i];
22492593348eSBarry Smith     }
22502593348eSBarry Smith   }
22512593348eSBarry Smith   else c->diag          = 0;
22522593348eSBarry Smith   c->nz                 = a->nz;
22532593348eSBarry Smith   c->maxnz              = a->maxnz;
22542593348eSBarry Smith   c->solve_work         = 0;
22552593348eSBarry Smith   c->spptr              = 0;      /* Dangerous -I'm throwing away a->spptr */
22567fc0212eSBarry Smith   c->mult_work          = 0;
22572593348eSBarry Smith   *B = C;
22582593348eSBarry Smith   return 0;
22592593348eSBarry Smith }
22602593348eSBarry Smith 
22615615d1e5SSatish Balay #undef __FUNC__
22625615d1e5SSatish Balay #define __FUNC__ "MatLoad_SeqBAIJ"
226319bcc07fSBarry Smith int MatLoad_SeqBAIJ(Viewer viewer,MatType type,Mat *A)
22642593348eSBarry Smith {
2265b6490206SBarry Smith   Mat_SeqBAIJ  *a;
22662593348eSBarry Smith   Mat          B;
2267de6a44a3SBarry Smith   int          i,nz,ierr,fd,header[4],size,*rowlengths=0,M,N,bs=1,flg;
2268b6490206SBarry Smith   int          *mask,mbs,*jj,j,rowcount,nzcount,k,*browlengths,maskcount;
226935aab85fSBarry Smith   int          kmax,jcount,block,idx,point,nzcountb,extra_rows;
2270a7c10996SSatish Balay   int          *masked, nmask,tmp,bs2,ishift;
2271b6490206SBarry Smith   Scalar       *aa;
227219bcc07fSBarry Smith   MPI_Comm     comm = ((PetscObject) viewer)->comm;
22732593348eSBarry Smith 
22741a6a6d98SBarry Smith   ierr = OptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,&flg);CHKERRQ(ierr);
2275de6a44a3SBarry Smith   bs2  = bs*bs;
2276b6490206SBarry Smith 
22772593348eSBarry Smith   MPI_Comm_size(comm,&size);
2278e3372554SBarry Smith   if (size > 1) SETERRQ(1,0,"view must have one processor");
227990ace30eSBarry Smith   ierr = ViewerBinaryGetDescriptor(viewer,&fd); CHKERRQ(ierr);
228077c4ece6SBarry Smith   ierr = PetscBinaryRead(fd,header,4,BINARY_INT); CHKERRQ(ierr);
2281e3372554SBarry Smith   if (header[0] != MAT_COOKIE) SETERRQ(1,0,"not Mat object");
22822593348eSBarry Smith   M = header[1]; N = header[2]; nz = header[3];
22832593348eSBarry Smith 
2284e3372554SBarry Smith   if (M != N) SETERRQ(1,0,"Can only do square matrices");
228535aab85fSBarry Smith 
228635aab85fSBarry Smith   /*
228735aab85fSBarry Smith      This code adds extra rows to make sure the number of rows is
228835aab85fSBarry Smith     divisible by the blocksize
228935aab85fSBarry Smith   */
2290b6490206SBarry Smith   mbs        = M/bs;
229135aab85fSBarry Smith   extra_rows = bs - M + bs*(mbs);
229235aab85fSBarry Smith   if (extra_rows == bs) extra_rows = 0;
229335aab85fSBarry Smith   else                  mbs++;
229435aab85fSBarry Smith   if (extra_rows) {
2295537820f0SBarry Smith     PLogInfo(0,"MatLoad_SeqBAIJ:Padding loaded matrix to match blocksize\n");
229635aab85fSBarry Smith   }
2297b6490206SBarry Smith 
22982593348eSBarry Smith   /* read in row lengths */
229935aab85fSBarry Smith   rowlengths = (int*) PetscMalloc((M+extra_rows)*sizeof(int));CHKPTRQ(rowlengths);
230077c4ece6SBarry Smith   ierr = PetscBinaryRead(fd,rowlengths,M,BINARY_INT); CHKERRQ(ierr);
230135aab85fSBarry Smith   for ( i=0; i<extra_rows; i++ ) rowlengths[M+i] = 1;
23022593348eSBarry Smith 
2303b6490206SBarry Smith   /* read in column indices */
230435aab85fSBarry Smith   jj = (int*) PetscMalloc( (nz+extra_rows)*sizeof(int) ); CHKPTRQ(jj);
230577c4ece6SBarry Smith   ierr = PetscBinaryRead(fd,jj,nz,BINARY_INT); CHKERRQ(ierr);
230635aab85fSBarry Smith   for ( i=0; i<extra_rows; i++ ) jj[nz+i] = M+i;
2307b6490206SBarry Smith 
2308b6490206SBarry Smith   /* loop over row lengths determining block row lengths */
2309b6490206SBarry Smith   browlengths = (int *) PetscMalloc(mbs*sizeof(int));CHKPTRQ(browlengths);
2310b6490206SBarry Smith   PetscMemzero(browlengths,mbs*sizeof(int));
231135aab85fSBarry Smith   mask   = (int *) PetscMalloc( 2*mbs*sizeof(int) ); CHKPTRQ(mask);
231235aab85fSBarry Smith   PetscMemzero(mask,mbs*sizeof(int));
231335aab85fSBarry Smith   masked = mask + mbs;
2314b6490206SBarry Smith   rowcount = 0; nzcount = 0;
2315b6490206SBarry Smith   for ( i=0; i<mbs; i++ ) {
231635aab85fSBarry Smith     nmask = 0;
2317b6490206SBarry Smith     for ( j=0; j<bs; j++ ) {
2318b6490206SBarry Smith       kmax = rowlengths[rowcount];
2319b6490206SBarry Smith       for ( k=0; k<kmax; k++ ) {
232035aab85fSBarry Smith         tmp = jj[nzcount++]/bs;
232135aab85fSBarry Smith         if (!mask[tmp]) {masked[nmask++] = tmp; mask[tmp] = 1;}
2322b6490206SBarry Smith       }
2323b6490206SBarry Smith       rowcount++;
2324b6490206SBarry Smith     }
232535aab85fSBarry Smith     browlengths[i] += nmask;
232635aab85fSBarry Smith     /* zero out the mask elements we set */
232735aab85fSBarry Smith     for ( j=0; j<nmask; j++ ) mask[masked[j]] = 0;
2328b6490206SBarry Smith   }
2329b6490206SBarry Smith 
23302593348eSBarry Smith   /* create our matrix */
233135aab85fSBarry Smith   ierr = MatCreateSeqBAIJ(comm,bs,M+extra_rows,N+extra_rows,0,browlengths,A);
233235aab85fSBarry Smith          CHKERRQ(ierr);
23332593348eSBarry Smith   B = *A;
2334b6490206SBarry Smith   a = (Mat_SeqBAIJ *) B->data;
23352593348eSBarry Smith 
23362593348eSBarry Smith   /* set matrix "i" values */
2337de6a44a3SBarry Smith   a->i[0] = 0;
2338b6490206SBarry Smith   for ( i=1; i<= mbs; i++ ) {
2339b6490206SBarry Smith     a->i[i]      = a->i[i-1] + browlengths[i-1];
2340b6490206SBarry Smith     a->ilen[i-1] = browlengths[i-1];
23412593348eSBarry Smith   }
2342b6490206SBarry Smith   a->nz         = 0;
2343b6490206SBarry Smith   for ( i=0; i<mbs; i++ ) a->nz += browlengths[i];
23442593348eSBarry Smith 
2345b6490206SBarry Smith   /* read in nonzero values */
234635aab85fSBarry Smith   aa = (Scalar *) PetscMalloc((nz+extra_rows)*sizeof(Scalar));CHKPTRQ(aa);
234777c4ece6SBarry Smith   ierr = PetscBinaryRead(fd,aa,nz,BINARY_SCALAR); CHKERRQ(ierr);
234835aab85fSBarry Smith   for ( i=0; i<extra_rows; i++ ) aa[nz+i] = 1.0;
2349b6490206SBarry Smith 
2350b6490206SBarry Smith   /* set "a" and "j" values into matrix */
2351b6490206SBarry Smith   nzcount = 0; jcount = 0;
2352b6490206SBarry Smith   for ( i=0; i<mbs; i++ ) {
2353b6490206SBarry Smith     nzcountb = nzcount;
235435aab85fSBarry Smith     nmask    = 0;
2355b6490206SBarry Smith     for ( j=0; j<bs; j++ ) {
2356b6490206SBarry Smith       kmax = rowlengths[i*bs+j];
2357b6490206SBarry Smith       for ( k=0; k<kmax; k++ ) {
235835aab85fSBarry Smith         tmp = jj[nzcount++]/bs;
235935aab85fSBarry Smith 	if (!mask[tmp]) { masked[nmask++] = tmp; mask[tmp] = 1;}
2360b6490206SBarry Smith       }
2361b6490206SBarry Smith       rowcount++;
2362b6490206SBarry Smith     }
2363de6a44a3SBarry Smith     /* sort the masked values */
236477c4ece6SBarry Smith     PetscSortInt(nmask,masked);
2365de6a44a3SBarry Smith 
2366b6490206SBarry Smith     /* set "j" values into matrix */
2367b6490206SBarry Smith     maskcount = 1;
236835aab85fSBarry Smith     for ( j=0; j<nmask; j++ ) {
236935aab85fSBarry Smith       a->j[jcount++]  = masked[j];
2370de6a44a3SBarry Smith       mask[masked[j]] = maskcount++;
2371b6490206SBarry Smith     }
2372b6490206SBarry Smith     /* set "a" values into matrix */
2373de6a44a3SBarry Smith     ishift = bs2*a->i[i];
2374b6490206SBarry Smith     for ( j=0; j<bs; j++ ) {
2375b6490206SBarry Smith       kmax = rowlengths[i*bs+j];
2376b6490206SBarry Smith       for ( k=0; k<kmax; k++ ) {
2377de6a44a3SBarry Smith         tmp    = jj[nzcountb]/bs ;
2378de6a44a3SBarry Smith         block  = mask[tmp] - 1;
2379de6a44a3SBarry Smith         point  = jj[nzcountb] - bs*tmp;
2380de6a44a3SBarry Smith         idx    = ishift + bs2*block + j + bs*point;
2381b6490206SBarry Smith         a->a[idx] = aa[nzcountb++];
2382b6490206SBarry Smith       }
2383b6490206SBarry Smith     }
238435aab85fSBarry Smith     /* zero out the mask elements we set */
238535aab85fSBarry Smith     for ( j=0; j<nmask; j++ ) mask[masked[j]] = 0;
2386b6490206SBarry Smith   }
2387e3372554SBarry Smith   if (jcount != a->nz) SETERRQ(1,0,"Error bad binary matrix");
2388b6490206SBarry Smith 
2389b6490206SBarry Smith   PetscFree(rowlengths);
2390b6490206SBarry Smith   PetscFree(browlengths);
2391b6490206SBarry Smith   PetscFree(aa);
2392b6490206SBarry Smith   PetscFree(jj);
2393b6490206SBarry Smith   PetscFree(mask);
2394b6490206SBarry Smith 
2395b6490206SBarry Smith   B->assembled = PETSC_TRUE;
2396de6a44a3SBarry Smith 
2397de6a44a3SBarry Smith   ierr = OptionsHasName(PETSC_NULL,"-mat_view_info",&flg); CHKERRQ(ierr);
2398de6a44a3SBarry Smith   if (flg) {
239919bcc07fSBarry Smith     Viewer tviewer;
240019bcc07fSBarry Smith     ierr = ViewerFileOpenASCII(B->comm,"stdout",&tviewer);CHKERRQ(ierr);
2401639f9d9dSBarry Smith     ierr = ViewerSetFormat(tviewer,VIEWER_FORMAT_ASCII_INFO,0);CHKERRQ(ierr);
240219bcc07fSBarry Smith     ierr = MatView(B,tviewer); CHKERRQ(ierr);
240319bcc07fSBarry Smith     ierr = ViewerDestroy(tviewer); CHKERRQ(ierr);
2404de6a44a3SBarry Smith   }
2405de6a44a3SBarry Smith   ierr = OptionsHasName(PETSC_NULL,"-mat_view_info_detailed",&flg);CHKERRQ(ierr);
2406de6a44a3SBarry Smith   if (flg) {
240719bcc07fSBarry Smith     Viewer tviewer;
240819bcc07fSBarry Smith     ierr = ViewerFileOpenASCII(B->comm,"stdout",&tviewer);CHKERRQ(ierr);
2409639f9d9dSBarry Smith     ierr = ViewerSetFormat(tviewer,VIEWER_FORMAT_ASCII_INFO_LONG,0);CHKERRQ(ierr);
241019bcc07fSBarry Smith     ierr = MatView(B,tviewer); CHKERRQ(ierr);
241119bcc07fSBarry Smith     ierr = ViewerDestroy(tviewer); CHKERRQ(ierr);
2412de6a44a3SBarry Smith   }
2413de6a44a3SBarry Smith   ierr = OptionsHasName(PETSC_NULL,"-mat_view",&flg); CHKERRQ(ierr);
2414de6a44a3SBarry Smith   if (flg) {
241519bcc07fSBarry Smith     Viewer tviewer;
241619bcc07fSBarry Smith     ierr = ViewerFileOpenASCII(B->comm,"stdout",&tviewer);CHKERRQ(ierr);
241719bcc07fSBarry Smith     ierr = MatView(B,tviewer); CHKERRQ(ierr);
241819bcc07fSBarry Smith     ierr = ViewerDestroy(tviewer); CHKERRQ(ierr);
2419de6a44a3SBarry Smith   }
2420de6a44a3SBarry Smith   ierr = OptionsHasName(PETSC_NULL,"-mat_view_matlab",&flg); CHKERRQ(ierr);
2421de6a44a3SBarry Smith   if (flg) {
242219bcc07fSBarry Smith     Viewer tviewer;
242319bcc07fSBarry Smith     ierr = ViewerFileOpenASCII(B->comm,"stdout",&tviewer);CHKERRQ(ierr);
2424639f9d9dSBarry Smith     ierr = ViewerSetFormat(tviewer,VIEWER_FORMAT_ASCII_MATLAB,"M");CHKERRQ(ierr);
242519bcc07fSBarry Smith     ierr = MatView(B,tviewer); CHKERRQ(ierr);
242619bcc07fSBarry Smith     ierr = ViewerDestroy(tviewer); CHKERRQ(ierr);
2427de6a44a3SBarry Smith   }
2428de6a44a3SBarry Smith   ierr = OptionsHasName(PETSC_NULL,"-mat_view_draw",&flg); CHKERRQ(ierr);
2429de6a44a3SBarry Smith   if (flg) {
243019bcc07fSBarry Smith     Viewer tviewer;
243119bcc07fSBarry Smith     ierr = ViewerDrawOpenX(B->comm,0,0,0,0,300,300,&tviewer); CHKERRQ(ierr);
243219bcc07fSBarry Smith     ierr = MatView(B,(Viewer)tviewer); CHKERRQ(ierr);
243319bcc07fSBarry Smith     ierr = ViewerFlush(tviewer); CHKERRQ(ierr);
243419bcc07fSBarry Smith     ierr = ViewerDestroy(tviewer); CHKERRQ(ierr);
2435de6a44a3SBarry Smith   }
24362593348eSBarry Smith   return 0;
24372593348eSBarry Smith }
24382593348eSBarry Smith 
24392593348eSBarry Smith 
24402593348eSBarry Smith 
2441