xref: /petsc/src/mat/impls/baij/seq/baij.c (revision f6d58c54d912f43595d1b328db7c6f14b52561bb)
1be1d678aSKris Buschelman #define PETSCMAT_DLL
2be1d678aSKris Buschelman 
32593348eSBarry Smith /*
4b6490206SBarry Smith     Defines the basic matrix operations for the BAIJ (compressed row)
52593348eSBarry Smith   matrix storage format.
62593348eSBarry Smith */
77c4f633dSBarry Smith #include "../src/mat/impls/baij/seq/baij.h"
8325e03aeSBarry Smith #include "petscsys.h"                     /*I "petscmat.h" I*/
93b547af2SSatish Balay 
10c60f0209SBarry Smith #include "../src/mat/blockinvert.h"
11b01c7715SBarry Smith 
12b01c7715SBarry Smith #undef __FUNCT__
1343516a2dSKris Buschelman #define __FUNCT__ "MatSeqBAIJInvertBlockDiagonal"
14bc08b0f1SBarry Smith /*@
1543516a2dSKris Buschelman   MatSeqBAIJInvertBlockDiagonal - Inverts the block diagonal entries.
1643516a2dSKris Buschelman 
1743516a2dSKris Buschelman   Collective on Mat
1843516a2dSKris Buschelman 
1943516a2dSKris Buschelman   Input Parameters:
2043516a2dSKris Buschelman . mat - the matrix
2143516a2dSKris Buschelman 
2243516a2dSKris Buschelman   Level: advanced
2343516a2dSKris Buschelman @*/
2446129b97SKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJInvertBlockDiagonal(Mat mat)
2543516a2dSKris Buschelman {
2643516a2dSKris Buschelman   PetscErrorCode ierr,(*f)(Mat);
2743516a2dSKris Buschelman 
2843516a2dSKris Buschelman   PetscFunctionBegin;
2943516a2dSKris Buschelman   PetscValidHeaderSpecific(mat,MAT_COOKIE,1);
3043516a2dSKris Buschelman   if (!mat->assembled) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for unassembled matrix");
3143516a2dSKris Buschelman   if (mat->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
3243516a2dSKris Buschelman 
3343516a2dSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)mat,"MatSeqBAIJInvertBlockDiagonal_C",(void (**)(void))&f);CHKERRQ(ierr);
3443516a2dSKris Buschelman   if (f) {
3543516a2dSKris Buschelman     ierr = (*f)(mat);CHKERRQ(ierr);
3643516a2dSKris Buschelman   } else {
3743516a2dSKris Buschelman     SETERRQ(PETSC_ERR_SUP,"Currently only implemented for SeqBAIJ.");
3843516a2dSKris Buschelman   }
3943516a2dSKris Buschelman   PetscFunctionReturn(0);
4043516a2dSKris Buschelman }
4143516a2dSKris Buschelman 
4243516a2dSKris Buschelman EXTERN_C_BEGIN
4343516a2dSKris Buschelman #undef __FUNCT__
44b01c7715SBarry Smith #define __FUNCT__ "MatInvertBlockDiagonal_SeqBAIJ"
4546129b97SKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatInvertBlockDiagonal_SeqBAIJ(Mat A)
46b01c7715SBarry Smith {
47b01c7715SBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*) A->data;
486849ba73SBarry Smith   PetscErrorCode ierr;
49d0f46423SBarry Smith   PetscInt       *diag_offset,i,bs = A->rmap->bs,mbs = a->mbs;
5097e5c40aSBarry Smith   MatScalar      *v = a->a,*odiag,*diag,*mdiag;
5162bba022SBarry Smith   PetscReal      shift = 0.0;
52b01c7715SBarry Smith 
53b01c7715SBarry Smith   PetscFunctionBegin;
54b01c7715SBarry Smith   if (a->idiagvalid) PetscFunctionReturn(0);
55b01c7715SBarry Smith   ierr = MatMarkDiagonal_SeqBAIJ(A);CHKERRQ(ierr);
56b01c7715SBarry Smith   diag_offset = a->diag;
57b01c7715SBarry Smith   if (!a->idiag) {
58b01c7715SBarry Smith     ierr = PetscMalloc(2*bs*bs*mbs*sizeof(PetscScalar),&a->idiag);CHKERRQ(ierr);
59b01c7715SBarry Smith   }
60b01c7715SBarry Smith   diag  = a->idiag;
61b01c7715SBarry Smith   mdiag = a->idiag+bs*bs*mbs;
62b01c7715SBarry Smith   /* factor and invert each block */
63521d7252SBarry Smith   switch (bs){
64ab040260SJed Brown     case 1:
65ab040260SJed Brown       for (i=0; i<mbs; i++) {
66ab040260SJed Brown         odiag = v + 1*diag_offset[i];
67ab040260SJed Brown         diag[0]  = odiag[0];
68ab040260SJed Brown         mdiag[0] = odiag[0];
69ab040260SJed Brown         diag[0]  = 1.0 / (diag[0] + shift);
70ab040260SJed Brown         diag    += 1;
71ab040260SJed Brown         mdiag   += 1;
72ab040260SJed Brown       }
73ab040260SJed Brown       break;
74b01c7715SBarry Smith     case 2:
75b01c7715SBarry Smith       for (i=0; i<mbs; i++) {
76b01c7715SBarry Smith         odiag   = v + 4*diag_offset[i];
77b01c7715SBarry Smith         diag[0]  = odiag[0]; diag[1] = odiag[1]; diag[2] = odiag[2]; diag[3] = odiag[3];
78b01c7715SBarry Smith 	mdiag[0] = odiag[0]; mdiag[1] = odiag[1]; mdiag[2] = odiag[2]; mdiag[3] = odiag[3];
7962bba022SBarry Smith 	ierr     = Kernel_A_gets_inverse_A_2(diag,shift);CHKERRQ(ierr);
80b01c7715SBarry Smith 	diag    += 4;
81b01c7715SBarry Smith 	mdiag   += 4;
82b01c7715SBarry Smith       }
83b01c7715SBarry Smith       break;
84b01c7715SBarry Smith     case 3:
85b01c7715SBarry Smith       for (i=0; i<mbs; i++) {
86b01c7715SBarry Smith         odiag    = v + 9*diag_offset[i];
87b01c7715SBarry Smith         diag[0]  = odiag[0]; diag[1] = odiag[1]; diag[2] = odiag[2]; diag[3] = odiag[3];
88b01c7715SBarry Smith         diag[4]  = odiag[4]; diag[5] = odiag[5]; diag[6] = odiag[6]; diag[7] = odiag[7];
89b01c7715SBarry Smith         diag[8]  = odiag[8];
90b01c7715SBarry Smith         mdiag[0] = odiag[0]; mdiag[1] = odiag[1]; mdiag[2] = odiag[2]; mdiag[3] = odiag[3];
91b01c7715SBarry Smith         mdiag[4] = odiag[4]; mdiag[5] = odiag[5]; mdiag[6] = odiag[6]; mdiag[7] = odiag[7];
92b01c7715SBarry Smith         mdiag[8] = odiag[8];
9362bba022SBarry Smith 	ierr     = Kernel_A_gets_inverse_A_3(diag,shift);CHKERRQ(ierr);
94b01c7715SBarry Smith 	diag    += 9;
95b01c7715SBarry Smith 	mdiag   += 9;
96b01c7715SBarry Smith       }
97b01c7715SBarry Smith       break;
98b01c7715SBarry Smith     case 4:
99b01c7715SBarry Smith       for (i=0; i<mbs; i++) {
100b01c7715SBarry Smith         odiag  = v + 16*diag_offset[i];
101b01c7715SBarry Smith         ierr   = PetscMemcpy(diag,odiag,16*sizeof(PetscScalar));CHKERRQ(ierr);
102b01c7715SBarry Smith         ierr   = PetscMemcpy(mdiag,odiag,16*sizeof(PetscScalar));CHKERRQ(ierr);
10362bba022SBarry Smith 	ierr   = Kernel_A_gets_inverse_A_4(diag,shift);CHKERRQ(ierr);
104b01c7715SBarry Smith 	diag  += 16;
105b01c7715SBarry Smith 	mdiag += 16;
106b01c7715SBarry Smith       }
107b01c7715SBarry Smith       break;
108b01c7715SBarry Smith     case 5:
109b01c7715SBarry Smith       for (i=0; i<mbs; i++) {
110b01c7715SBarry Smith         odiag = v + 25*diag_offset[i];
111b01c7715SBarry Smith         ierr   = PetscMemcpy(diag,odiag,25*sizeof(PetscScalar));CHKERRQ(ierr);
112b01c7715SBarry Smith         ierr   = PetscMemcpy(mdiag,odiag,25*sizeof(PetscScalar));CHKERRQ(ierr);
11362bba022SBarry Smith 	ierr   = Kernel_A_gets_inverse_A_5(diag,shift);CHKERRQ(ierr);
114b01c7715SBarry Smith 	diag  += 25;
115b01c7715SBarry Smith 	mdiag += 25;
116b01c7715SBarry Smith       }
117b01c7715SBarry Smith       break;
118d49b2adcSBarry Smith     case 6:
119d49b2adcSBarry Smith       for (i=0; i<mbs; i++) {
120d49b2adcSBarry Smith         odiag = v + 36*diag_offset[i];
121d49b2adcSBarry Smith         ierr   = PetscMemcpy(diag,odiag,36*sizeof(PetscScalar));CHKERRQ(ierr);
122d49b2adcSBarry Smith         ierr   = PetscMemcpy(mdiag,odiag,36*sizeof(PetscScalar));CHKERRQ(ierr);
123d49b2adcSBarry Smith 	ierr   = Kernel_A_gets_inverse_A_6(diag,shift);CHKERRQ(ierr);
124d49b2adcSBarry Smith 	diag  += 36;
125d49b2adcSBarry Smith 	mdiag += 36;
126d49b2adcSBarry Smith       }
127d49b2adcSBarry Smith       break;
128b01c7715SBarry Smith     default:
129521d7252SBarry Smith       SETERRQ1(PETSC_ERR_SUP,"not supported for block size %D",bs);
130b01c7715SBarry Smith   }
131b01c7715SBarry Smith   a->idiagvalid = PETSC_TRUE;
132b01c7715SBarry Smith   PetscFunctionReturn(0);
133b01c7715SBarry Smith }
13443516a2dSKris Buschelman EXTERN_C_END
135b01c7715SBarry Smith 
136b01c7715SBarry Smith #undef __FUNCT__
1376d3beeddSMatthew Knepley #define __FUNCT__ "MatPBRelax_SeqBAIJ_1"
1386d3beeddSMatthew Knepley PetscErrorCode MatPBRelax_SeqBAIJ_1(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
1396d3beeddSMatthew Knepley {
1406d3beeddSMatthew Knepley   Mat_SeqBAIJ        *a = (Mat_SeqBAIJ*)A->data;
1416d3beeddSMatthew Knepley   PetscScalar        *x,x1,s1;
142dd6ea824SBarry Smith   const PetscScalar  *b;
143dd6ea824SBarry Smith   const MatScalar    *aa = a->a, *idiag,*mdiag,*v;
1446d3beeddSMatthew Knepley   PetscErrorCode     ierr;
1456d3beeddSMatthew Knepley   PetscInt           m = a->mbs,i,i2,nz,idx;
1466d3beeddSMatthew Knepley   const PetscInt     *diag,*ai = a->i,*aj = a->j,*vi;
1476d3beeddSMatthew Knepley 
1486d3beeddSMatthew Knepley   PetscFunctionBegin;
1496d3beeddSMatthew Knepley   if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat");
1506d3beeddSMatthew Knepley   its = its*lits;
1516d3beeddSMatthew Knepley   if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
1526d3beeddSMatthew Knepley   if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift");
1536d3beeddSMatthew Knepley   if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor");
1546d3beeddSMatthew Knepley   if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts");
1556d3beeddSMatthew Knepley   if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations");
1566d3beeddSMatthew Knepley 
1576d3beeddSMatthew Knepley   if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);}
1586d3beeddSMatthew Knepley 
1596d3beeddSMatthew Knepley   diag  = a->diag;
1606d3beeddSMatthew Knepley   idiag = a->idiag;
1616d3beeddSMatthew Knepley   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
1626d3beeddSMatthew Knepley   ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
1636d3beeddSMatthew Knepley 
1646d3beeddSMatthew Knepley   if (flag & SOR_ZERO_INITIAL_GUESS) {
1656d3beeddSMatthew Knepley     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){
1666d3beeddSMatthew Knepley       x[0] = b[0]*idiag[0];
1676d3beeddSMatthew Knepley       i2     = 1;
1686d3beeddSMatthew Knepley       idiag += 1;
1696d3beeddSMatthew Knepley       for (i=1; i<m; i++) {
1706d3beeddSMatthew Knepley         v     = aa + ai[i];
1716d3beeddSMatthew Knepley         vi    = aj + ai[i];
1726d3beeddSMatthew Knepley         nz    = diag[i] - ai[i];
1736d3beeddSMatthew Knepley         s1    = b[i2];
1746d3beeddSMatthew Knepley         while (nz--) {
1756d3beeddSMatthew Knepley           idx  = (*vi++);
1766d3beeddSMatthew Knepley           x1   = x[idx];
1776d3beeddSMatthew Knepley           s1  -= v[0]*x1;
1786d3beeddSMatthew Knepley           v   += 1;
1796d3beeddSMatthew Knepley         }
1806d3beeddSMatthew Knepley         x[i2]   = idiag[0]*s1;
1816d3beeddSMatthew Knepley         idiag   += 1;
1826d3beeddSMatthew Knepley         i2      += 1;
1836d3beeddSMatthew Knepley       }
1846d3beeddSMatthew Knepley       /* for logging purposes assume number of nonzero in lower half is 1/2 of total */
1856d3beeddSMatthew Knepley       ierr = PetscLogFlops(a->nz);CHKERRQ(ierr);
1866d3beeddSMatthew Knepley     }
1876d3beeddSMatthew Knepley     if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) &&
1886d3beeddSMatthew Knepley         (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) {
1896d3beeddSMatthew Knepley       i2    = 0;
1906d3beeddSMatthew Knepley       mdiag = a->idiag+a->mbs;
1916d3beeddSMatthew Knepley       for (i=0; i<m; i++) {
1926d3beeddSMatthew Knepley         x1      = x[i2];
1936d3beeddSMatthew Knepley         x[i2]   = mdiag[0]*x1;
1946d3beeddSMatthew Knepley         mdiag  += 1;
1956d3beeddSMatthew Knepley         i2     += 1;
1966d3beeddSMatthew Knepley       }
1976d3beeddSMatthew Knepley       ierr = PetscLogFlops(m);CHKERRQ(ierr);
1986d3beeddSMatthew Knepley     } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
199d0f46423SBarry Smith       ierr = PetscMemcpy(x,b,A->rmap->N*sizeof(PetscScalar));CHKERRQ(ierr);
2006d3beeddSMatthew Knepley     }
2016d3beeddSMatthew Knepley     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){
2026d3beeddSMatthew Knepley       idiag   = a->idiag+a->mbs - 1;
2036d3beeddSMatthew Knepley       i2      = m - 1;
2046d3beeddSMatthew Knepley       x1      = x[i2];
2056d3beeddSMatthew Knepley       x[i2]   = idiag[0]*x1;
2066d3beeddSMatthew Knepley       idiag -= 1;
2076d3beeddSMatthew Knepley       i2    -= 1;
2086d3beeddSMatthew Knepley       for (i=m-2; i>=0; i--) {
2096d3beeddSMatthew Knepley         v     = aa + (diag[i]+1);
2106d3beeddSMatthew Knepley         vi    = aj + diag[i] + 1;
2116d3beeddSMatthew Knepley         nz    = ai[i+1] - diag[i] - 1;
2126d3beeddSMatthew Knepley         s1    = x[i2];
2136d3beeddSMatthew Knepley         while (nz--) {
2146d3beeddSMatthew Knepley           idx  = (*vi++);
2156d3beeddSMatthew Knepley           x1   = x[idx];
2166d3beeddSMatthew Knepley           s1  -= v[0]*x1;
2176d3beeddSMatthew Knepley           v   += 1;
2186d3beeddSMatthew Knepley         }
2196d3beeddSMatthew Knepley         x[i2]   = idiag[0]*s1;
220ab040260SJed Brown         idiag   -= 1;
2216d3beeddSMatthew Knepley         i2      -= 1;
2226d3beeddSMatthew Knepley       }
2236d3beeddSMatthew Knepley       ierr = PetscLogFlops(a->nz);CHKERRQ(ierr);
2246d3beeddSMatthew Knepley     }
2256d3beeddSMatthew Knepley   } else {
2266d3beeddSMatthew Knepley     SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess");
2276d3beeddSMatthew Knepley   }
2286d3beeddSMatthew Knepley   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2296d3beeddSMatthew Knepley   ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
2306d3beeddSMatthew Knepley   PetscFunctionReturn(0);
2316d3beeddSMatthew Knepley }
2326d3beeddSMatthew Knepley 
2336d3beeddSMatthew Knepley #undef __FUNCT__
234b01c7715SBarry Smith #define __FUNCT__ "MatPBRelax_SeqBAIJ_2"
235c1ac3661SBarry Smith PetscErrorCode MatPBRelax_SeqBAIJ_2(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
236b01c7715SBarry Smith {
237b01c7715SBarry Smith   Mat_SeqBAIJ        *a = (Mat_SeqBAIJ*)A->data;
238b01c7715SBarry Smith   PetscScalar        *x,x1,x2,s1,s2;
239dd6ea824SBarry Smith   const PetscScalar  *b;
240dd6ea824SBarry Smith   const MatScalar    *v,*aa = a->a, *idiag,*mdiag;
241dfbe8321SBarry Smith   PetscErrorCode     ierr;
242c1ac3661SBarry Smith   PetscInt           m = a->mbs,i,i2,nz,idx;
243c1ac3661SBarry Smith   const PetscInt     *diag,*ai = a->i,*aj = a->j,*vi;
244b01c7715SBarry Smith 
245b01c7715SBarry Smith   PetscFunctionBegin;
24651f519a2SBarry Smith   if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat");
247b01c7715SBarry Smith   its = its*lits;
24877431f27SBarry Smith   if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
249b01c7715SBarry Smith   if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift");
250b01c7715SBarry Smith   if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor");
25171f1c65dSBarry Smith   if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts");
252b01c7715SBarry Smith   if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations");
253b01c7715SBarry Smith 
254b01c7715SBarry Smith   if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);}
255b01c7715SBarry Smith 
256b01c7715SBarry Smith   diag  = a->diag;
257b01c7715SBarry Smith   idiag = a->idiag;
2581ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2591ebc52fbSHong Zhang   ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
260b01c7715SBarry Smith 
261b01c7715SBarry Smith   if (flag & SOR_ZERO_INITIAL_GUESS) {
262b01c7715SBarry Smith     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){
263b01c7715SBarry Smith       x[0] = b[0]*idiag[0] + b[1]*idiag[2];
264b01c7715SBarry Smith       x[1] = b[0]*idiag[1] + b[1]*idiag[3];
265b01c7715SBarry Smith       i2     = 2;
266b01c7715SBarry Smith       idiag += 4;
267b01c7715SBarry Smith       for (i=1; i<m; i++) {
268b01c7715SBarry Smith 	v     = aa + 4*ai[i];
269b01c7715SBarry Smith 	vi    = aj + ai[i];
270b01c7715SBarry Smith 	nz    = diag[i] - ai[i];
271b01c7715SBarry Smith 	s1    = b[i2]; s2 = b[i2+1];
272b01c7715SBarry Smith 	while (nz--) {
273b01c7715SBarry Smith 	  idx  = 2*(*vi++);
274b01c7715SBarry Smith 	  x1   = x[idx]; x2 = x[1+idx];
275b01c7715SBarry Smith 	  s1  -= v[0]*x1 + v[2]*x2;
276b01c7715SBarry Smith 	  s2  -= v[1]*x1 + v[3]*x2;
277b01c7715SBarry Smith 	  v   += 4;
278b01c7715SBarry Smith 	}
279b01c7715SBarry Smith 	x[i2]   = idiag[0]*s1 + idiag[2]*s2;
280b01c7715SBarry Smith 	x[i2+1] = idiag[1]*s1 + idiag[3]*s2;
281b01c7715SBarry Smith         idiag   += 4;
282b01c7715SBarry Smith         i2      += 2;
283b01c7715SBarry Smith       }
284b01c7715SBarry Smith       /* for logging purposes assume number of nonzero in lower half is 1/2 of total */
285dc0b31edSSatish Balay       ierr = PetscLogFlops(4.0*(a->nz));CHKERRQ(ierr);
286b01c7715SBarry Smith     }
287b01c7715SBarry Smith     if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) &&
288b01c7715SBarry Smith         (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) {
289b01c7715SBarry Smith       i2    = 0;
290b01c7715SBarry Smith       mdiag = a->idiag+4*a->mbs;
291b01c7715SBarry Smith       for (i=0; i<m; i++) {
292b01c7715SBarry Smith         x1      = x[i2]; x2 = x[i2+1];
293b01c7715SBarry Smith         x[i2]   = mdiag[0]*x1 + mdiag[2]*x2;
294b01c7715SBarry Smith         x[i2+1] = mdiag[1]*x1 + mdiag[3]*x2;
295b01c7715SBarry Smith         mdiag  += 4;
296b01c7715SBarry Smith         i2     += 2;
297b01c7715SBarry Smith       }
298dc0b31edSSatish Balay       ierr = PetscLogFlops(6.0*m);CHKERRQ(ierr);
299b01c7715SBarry Smith     } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
300d0f46423SBarry Smith       ierr = PetscMemcpy(x,b,A->rmap->N*sizeof(PetscScalar));CHKERRQ(ierr);
301b01c7715SBarry Smith     }
302b01c7715SBarry Smith     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){
303b01c7715SBarry Smith       idiag   = a->idiag+4*a->mbs - 4;
304b01c7715SBarry Smith       i2      = 2*m - 2;
305b01c7715SBarry Smith       x1      = x[i2]; x2 = x[i2+1];
306b01c7715SBarry Smith       x[i2]   = idiag[0]*x1 + idiag[2]*x2;
307b01c7715SBarry Smith       x[i2+1] = idiag[1]*x1 + idiag[3]*x2;
308b01c7715SBarry Smith       idiag -= 4;
309b01c7715SBarry Smith       i2    -= 2;
310b01c7715SBarry Smith       for (i=m-2; i>=0; i--) {
311b01c7715SBarry Smith 	v     = aa + 4*(diag[i]+1);
312b01c7715SBarry Smith 	vi    = aj + diag[i] + 1;
313b01c7715SBarry Smith 	nz    = ai[i+1] - diag[i] - 1;
314b01c7715SBarry Smith 	s1    = x[i2]; s2 = x[i2+1];
315b01c7715SBarry Smith 	while (nz--) {
316b01c7715SBarry Smith 	  idx  = 2*(*vi++);
317b01c7715SBarry Smith 	  x1   = x[idx]; x2 = x[1+idx];
318b01c7715SBarry Smith 	  s1  -= v[0]*x1 + v[2]*x2;
319b01c7715SBarry Smith 	  s2  -= v[1]*x1 + v[3]*x2;
320b01c7715SBarry Smith 	  v   += 4;
321b01c7715SBarry Smith 	}
322b01c7715SBarry Smith 	x[i2]   = idiag[0]*s1 + idiag[2]*s2;
323b01c7715SBarry Smith 	x[i2+1] = idiag[1]*s1 + idiag[3]*s2;
324b01c7715SBarry Smith         idiag   -= 4;
325b01c7715SBarry Smith         i2      -= 2;
326b01c7715SBarry Smith       }
327dc0b31edSSatish Balay       ierr = PetscLogFlops(4.0*(a->nz));CHKERRQ(ierr);
328b01c7715SBarry Smith     }
329b01c7715SBarry Smith   } else {
330634064b4SBarry Smith     SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess");
331b01c7715SBarry Smith   }
3321ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
3331ebc52fbSHong Zhang   ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
334b01c7715SBarry Smith   PetscFunctionReturn(0);
335b01c7715SBarry Smith }
336b01c7715SBarry Smith 
337b01c7715SBarry Smith #undef __FUNCT__
338b01c7715SBarry Smith #define __FUNCT__ "MatPBRelax_SeqBAIJ_3"
339c1ac3661SBarry Smith PetscErrorCode MatPBRelax_SeqBAIJ_3(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
340b01c7715SBarry Smith {
341b01c7715SBarry Smith   Mat_SeqBAIJ        *a = (Mat_SeqBAIJ*)A->data;
342b01c7715SBarry Smith   PetscScalar        *x,x1,x2,x3,s1,s2,s3;
343dd6ea824SBarry Smith   const MatScalar    *v,*aa = a->a, *idiag,*mdiag;
344dd6ea824SBarry Smith   const PetscScalar  *b;
345dfbe8321SBarry Smith   PetscErrorCode     ierr;
346c1ac3661SBarry Smith   PetscInt           m = a->mbs,i,i2,nz,idx;
347c1ac3661SBarry Smith   const PetscInt     *diag,*ai = a->i,*aj = a->j,*vi;
348b01c7715SBarry Smith 
349b01c7715SBarry Smith   PetscFunctionBegin;
350b01c7715SBarry Smith   its = its*lits;
35171f1c65dSBarry Smith   if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat");
35277431f27SBarry Smith   if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
353b01c7715SBarry Smith   if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift");
354b01c7715SBarry Smith   if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor");
35571f1c65dSBarry Smith   if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts");
356b01c7715SBarry Smith   if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations");
357b01c7715SBarry Smith 
358b01c7715SBarry Smith   if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);}
359b01c7715SBarry Smith 
360b01c7715SBarry Smith   diag  = a->diag;
361b01c7715SBarry Smith   idiag = a->idiag;
3621ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
3631ebc52fbSHong Zhang   ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
364b01c7715SBarry Smith 
365b01c7715SBarry Smith   if (flag & SOR_ZERO_INITIAL_GUESS) {
366b01c7715SBarry Smith     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){
367b01c7715SBarry Smith       x[0] = b[0]*idiag[0] + b[1]*idiag[3] + b[2]*idiag[6];
368b01c7715SBarry Smith       x[1] = b[0]*idiag[1] + b[1]*idiag[4] + b[2]*idiag[7];
369b01c7715SBarry Smith       x[2] = b[0]*idiag[2] + b[1]*idiag[5] + b[2]*idiag[8];
370b01c7715SBarry Smith       i2     = 3;
371b01c7715SBarry Smith       idiag += 9;
372b01c7715SBarry Smith       for (i=1; i<m; i++) {
373b01c7715SBarry Smith         v     = aa + 9*ai[i];
374b01c7715SBarry Smith         vi    = aj + ai[i];
375b01c7715SBarry Smith         nz    = diag[i] - ai[i];
376b01c7715SBarry Smith         s1    = b[i2]; s2 = b[i2+1]; s3 = b[i2+2];
377b01c7715SBarry Smith         while (nz--) {
378b01c7715SBarry Smith           idx  = 3*(*vi++);
379b01c7715SBarry Smith           x1   = x[idx]; x2 = x[1+idx];x3 = x[2+idx];
380b01c7715SBarry Smith           s1  -= v[0]*x1 + v[3]*x2 + v[6]*x3;
381b01c7715SBarry Smith           s2  -= v[1]*x1 + v[4]*x2 + v[7]*x3;
382b01c7715SBarry Smith           s3  -= v[2]*x1 + v[5]*x2 + v[8]*x3;
383b01c7715SBarry Smith           v   += 9;
384b01c7715SBarry Smith         }
385b01c7715SBarry Smith         x[i2]   = idiag[0]*s1 + idiag[3]*s2 + idiag[6]*s3;
386b01c7715SBarry Smith         x[i2+1] = idiag[1]*s1 + idiag[4]*s2 + idiag[7]*s3;
387b01c7715SBarry Smith         x[i2+2] = idiag[2]*s1 + idiag[5]*s2 + idiag[8]*s3;
388b01c7715SBarry Smith         idiag   += 9;
389b01c7715SBarry Smith         i2      += 3;
390b01c7715SBarry Smith       }
391b01c7715SBarry Smith       /* for logging purposes assume number of nonzero in lower half is 1/2 of total */
392dc0b31edSSatish Balay       ierr = PetscLogFlops(9.0*(a->nz));CHKERRQ(ierr);
393b01c7715SBarry Smith     }
394b01c7715SBarry Smith     if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) &&
395b01c7715SBarry Smith         (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) {
396b01c7715SBarry Smith       i2    = 0;
397b01c7715SBarry Smith       mdiag = a->idiag+9*a->mbs;
398b01c7715SBarry Smith       for (i=0; i<m; i++) {
399b01c7715SBarry Smith         x1      = x[i2]; x2 = x[i2+1]; x3 = x[i2+2];
400b01c7715SBarry Smith         x[i2]   = mdiag[0]*x1 + mdiag[3]*x2 + mdiag[6]*x3;
401b01c7715SBarry Smith         x[i2+1] = mdiag[1]*x1 + mdiag[4]*x2 + mdiag[7]*x3;
402b01c7715SBarry Smith         x[i2+2] = mdiag[2]*x1 + mdiag[5]*x2 + mdiag[8]*x3;
403b01c7715SBarry Smith         mdiag  += 9;
404b01c7715SBarry Smith         i2     += 3;
405b01c7715SBarry Smith       }
406dc0b31edSSatish Balay       ierr = PetscLogFlops(15.0*m);CHKERRQ(ierr);
407b01c7715SBarry Smith     } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
408d0f46423SBarry Smith       ierr = PetscMemcpy(x,b,A->rmap->N*sizeof(PetscScalar));CHKERRQ(ierr);
409b01c7715SBarry Smith     }
410b01c7715SBarry Smith     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){
411b01c7715SBarry Smith       idiag   = a->idiag+9*a->mbs - 9;
412b01c7715SBarry Smith       i2      = 3*m - 3;
413b01c7715SBarry Smith       x1      = x[i2]; x2 = x[i2+1]; x3 = x[i2+2];
414b01c7715SBarry Smith       x[i2]   = idiag[0]*x1 + idiag[3]*x2 + idiag[6]*x3;
415b01c7715SBarry Smith       x[i2+1] = idiag[1]*x1 + idiag[4]*x2 + idiag[7]*x3;
416b01c7715SBarry Smith       x[i2+2] = idiag[2]*x1 + idiag[5]*x2 + idiag[8]*x3;
417b01c7715SBarry Smith       idiag -= 9;
418b01c7715SBarry Smith       i2    -= 3;
419b01c7715SBarry Smith       for (i=m-2; i>=0; i--) {
420b01c7715SBarry Smith         v     = aa + 9*(diag[i]+1);
421b01c7715SBarry Smith         vi    = aj + diag[i] + 1;
422b01c7715SBarry Smith         nz    = ai[i+1] - diag[i] - 1;
423b01c7715SBarry Smith         s1    = x[i2]; s2 = x[i2+1]; s3 = x[i2+2];
424b01c7715SBarry Smith         while (nz--) {
425b01c7715SBarry Smith           idx  = 3*(*vi++);
426b01c7715SBarry Smith           x1   = x[idx]; x2 = x[1+idx]; x3 = x[2+idx];
427b01c7715SBarry Smith           s1  -= v[0]*x1 + v[3]*x2 + v[6]*x3;
428b01c7715SBarry Smith           s2  -= v[1]*x1 + v[4]*x2 + v[7]*x3;
429b01c7715SBarry Smith           s3  -= v[2]*x1 + v[5]*x2 + v[8]*x3;
430b01c7715SBarry Smith           v   += 9;
431b01c7715SBarry Smith         }
432b01c7715SBarry Smith         x[i2]   = idiag[0]*s1 + idiag[3]*s2 + idiag[6]*s3;
433b01c7715SBarry Smith         x[i2+1] = idiag[1]*s1 + idiag[4]*s2 + idiag[7]*s3;
434b01c7715SBarry Smith         x[i2+2] = idiag[2]*s1 + idiag[5]*s2 + idiag[8]*s3;
435b01c7715SBarry Smith         idiag   -= 9;
436b01c7715SBarry Smith         i2      -= 3;
437b01c7715SBarry Smith       }
438dc0b31edSSatish Balay       ierr = PetscLogFlops(9.0*(a->nz));CHKERRQ(ierr);
439b01c7715SBarry Smith     }
440b01c7715SBarry Smith   } else {
441634064b4SBarry Smith     SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess");
442b01c7715SBarry Smith   }
4431ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
4441ebc52fbSHong Zhang   ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
445b01c7715SBarry Smith   PetscFunctionReturn(0);
446b01c7715SBarry Smith }
447b01c7715SBarry Smith 
448b01c7715SBarry Smith #undef __FUNCT__
449b01c7715SBarry Smith #define __FUNCT__ "MatPBRelax_SeqBAIJ_4"
450c1ac3661SBarry Smith PetscErrorCode MatPBRelax_SeqBAIJ_4(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
451b01c7715SBarry Smith {
452b01c7715SBarry Smith   Mat_SeqBAIJ        *a = (Mat_SeqBAIJ*)A->data;
453b01c7715SBarry Smith   PetscScalar        *x,x1,x2,x3,x4,s1,s2,s3,s4;
454dd6ea824SBarry Smith   const MatScalar    *v,*aa = a->a, *idiag,*mdiag;
455dd6ea824SBarry Smith   const PetscScalar  *b;
456dfbe8321SBarry Smith   PetscErrorCode     ierr;
457c1ac3661SBarry Smith   PetscInt           m = a->mbs,i,i2,nz,idx;
458c1ac3661SBarry Smith   const PetscInt     *diag,*ai = a->i,*aj = a->j,*vi;
459b01c7715SBarry Smith 
460b01c7715SBarry Smith   PetscFunctionBegin;
46171f1c65dSBarry Smith   if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat");
462b01c7715SBarry Smith   its = its*lits;
46377431f27SBarry Smith   if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
464b01c7715SBarry Smith   if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift");
465b01c7715SBarry Smith   if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor");
46671f1c65dSBarry Smith   if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts");
467b01c7715SBarry Smith   if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations");
468b01c7715SBarry Smith 
469b01c7715SBarry Smith   if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);}
470b01c7715SBarry Smith 
471b01c7715SBarry Smith   diag  = a->diag;
472b01c7715SBarry Smith   idiag = a->idiag;
4731ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
4741ebc52fbSHong Zhang   ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
475b01c7715SBarry Smith 
476b01c7715SBarry Smith   if (flag & SOR_ZERO_INITIAL_GUESS) {
477b01c7715SBarry Smith     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){
478b01c7715SBarry Smith       x[0] = b[0]*idiag[0] + b[1]*idiag[4] + b[2]*idiag[8]  + b[3]*idiag[12];
479b01c7715SBarry Smith       x[1] = b[0]*idiag[1] + b[1]*idiag[5] + b[2]*idiag[9]  + b[3]*idiag[13];
480b01c7715SBarry Smith       x[2] = b[0]*idiag[2] + b[1]*idiag[6] + b[2]*idiag[10] + b[3]*idiag[14];
481b01c7715SBarry Smith       x[3] = b[0]*idiag[3] + b[1]*idiag[7] + b[2]*idiag[11] + b[3]*idiag[15];
482b01c7715SBarry Smith       i2     = 4;
483b01c7715SBarry Smith       idiag += 16;
484b01c7715SBarry Smith       for (i=1; i<m; i++) {
485b01c7715SBarry Smith 	v     = aa + 16*ai[i];
486b01c7715SBarry Smith 	vi    = aj + ai[i];
487b01c7715SBarry Smith 	nz    = diag[i] - ai[i];
488b01c7715SBarry Smith 	s1    = b[i2]; s2 = b[i2+1]; s3 = b[i2+2]; s4 = b[i2+3];
489b01c7715SBarry Smith 	while (nz--) {
490b01c7715SBarry Smith 	  idx  = 4*(*vi++);
491b01c7715SBarry Smith 	  x1   = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx];
492b01c7715SBarry Smith 	  s1  -= v[0]*x1 + v[4]*x2 + v[8]*x3  + v[12]*x4;
493b01c7715SBarry Smith 	  s2  -= v[1]*x1 + v[5]*x2 + v[9]*x3  + v[13]*x4;
494b01c7715SBarry Smith 	  s3  -= v[2]*x1 + v[6]*x2 + v[10]*x3 + v[14]*x4;
495b01c7715SBarry Smith 	  s4  -= v[3]*x1 + v[7]*x2 + v[11]*x3 + v[15]*x4;
496b01c7715SBarry Smith 	  v   += 16;
497b01c7715SBarry Smith 	}
498b01c7715SBarry Smith 	x[i2]   = idiag[0]*s1 + idiag[4]*s2 + idiag[8]*s3  + idiag[12]*s4;
499b01c7715SBarry Smith 	x[i2+1] = idiag[1]*s1 + idiag[5]*s2 + idiag[9]*s3  + idiag[13]*s4;
500b01c7715SBarry Smith 	x[i2+2] = idiag[2]*s1 + idiag[6]*s2 + idiag[10]*s3 + idiag[14]*s4;
501b01c7715SBarry Smith 	x[i2+3] = idiag[3]*s1 + idiag[7]*s2 + idiag[11]*s3 + idiag[15]*s4;
502b01c7715SBarry Smith         idiag   += 16;
503b01c7715SBarry Smith         i2      += 4;
504b01c7715SBarry Smith       }
505b01c7715SBarry Smith       /* for logging purposes assume number of nonzero in lower half is 1/2 of total */
506dc0b31edSSatish Balay       ierr = PetscLogFlops(16.0*(a->nz));CHKERRQ(ierr);
507b01c7715SBarry Smith     }
508b01c7715SBarry Smith     if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) &&
509b01c7715SBarry Smith         (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) {
510b01c7715SBarry Smith       i2    = 0;
511b01c7715SBarry Smith       mdiag = a->idiag+16*a->mbs;
512b01c7715SBarry Smith       for (i=0; i<m; i++) {
513b01c7715SBarry Smith         x1      = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3];
514b01c7715SBarry Smith         x[i2]   = mdiag[0]*x1 + mdiag[4]*x2 + mdiag[8]*x3  + mdiag[12]*x4;
515b01c7715SBarry Smith         x[i2+1] = mdiag[1]*x1 + mdiag[5]*x2 + mdiag[9]*x3  + mdiag[13]*x4;
516b01c7715SBarry Smith         x[i2+2] = mdiag[2]*x1 + mdiag[6]*x2 + mdiag[10]*x3 + mdiag[14]*x4;
517b01c7715SBarry Smith         x[i2+3] = mdiag[3]*x1 + mdiag[7]*x2 + mdiag[11]*x3 + mdiag[15]*x4;
518b01c7715SBarry Smith         mdiag  += 16;
519b01c7715SBarry Smith         i2     += 4;
520b01c7715SBarry Smith       }
521dc0b31edSSatish Balay       ierr = PetscLogFlops(28.0*m);CHKERRQ(ierr);
522b01c7715SBarry Smith     } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
523d0f46423SBarry Smith       ierr = PetscMemcpy(x,b,A->rmap->N*sizeof(PetscScalar));CHKERRQ(ierr);
524b01c7715SBarry Smith     }
525b01c7715SBarry Smith     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){
526b01c7715SBarry Smith       idiag   = a->idiag+16*a->mbs - 16;
527b01c7715SBarry Smith       i2      = 4*m - 4;
528b01c7715SBarry Smith       x1      = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3];
529b01c7715SBarry Smith       x[i2]   = idiag[0]*x1 + idiag[4]*x2 + idiag[8]*x3  + idiag[12]*x4;
530b01c7715SBarry Smith       x[i2+1] = idiag[1]*x1 + idiag[5]*x2 + idiag[9]*x3  + idiag[13]*x4;
531b01c7715SBarry Smith       x[i2+2] = idiag[2]*x1 + idiag[6]*x2 + idiag[10]*x3 + idiag[14]*x4;
532b01c7715SBarry Smith       x[i2+3] = idiag[3]*x1 + idiag[7]*x2 + idiag[11]*x3 + idiag[15]*x4;
533b01c7715SBarry Smith       idiag -= 16;
534b01c7715SBarry Smith       i2    -= 4;
535b01c7715SBarry Smith       for (i=m-2; i>=0; i--) {
536b01c7715SBarry Smith 	v     = aa + 16*(diag[i]+1);
537b01c7715SBarry Smith 	vi    = aj + diag[i] + 1;
538b01c7715SBarry Smith 	nz    = ai[i+1] - diag[i] - 1;
539b01c7715SBarry Smith 	s1    = x[i2]; s2 = x[i2+1]; s3 = x[i2+2]; s4 = x[i2+3];
540b01c7715SBarry Smith 	while (nz--) {
541b01c7715SBarry Smith 	  idx  = 4*(*vi++);
542b01c7715SBarry Smith 	  x1   = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx];
543b01c7715SBarry Smith 	  s1  -= v[0]*x1 + v[4]*x2 + v[8]*x3  + v[12]*x4;
544b01c7715SBarry Smith 	  s2  -= v[1]*x1 + v[5]*x2 + v[9]*x3  + v[13]*x4;
545b01c7715SBarry Smith 	  s3  -= v[2]*x1 + v[6]*x2 + v[10]*x3 + v[14]*x4;
546b01c7715SBarry Smith 	  s4  -= v[3]*x1 + v[7]*x2 + v[11]*x3 + v[15]*x4;
547b01c7715SBarry Smith 	  v   += 16;
548b01c7715SBarry Smith 	}
549b01c7715SBarry Smith 	x[i2]   = idiag[0]*s1 + idiag[4]*s2 + idiag[8]*s3  + idiag[12]*s4;
550b01c7715SBarry Smith 	x[i2+1] = idiag[1]*s1 + idiag[5]*s2 + idiag[9]*s3  + idiag[13]*s4;
551b01c7715SBarry Smith 	x[i2+2] = idiag[2]*s1 + idiag[6]*s2 + idiag[10]*s3 + idiag[14]*s4;
552b01c7715SBarry Smith 	x[i2+3] = idiag[3]*s1 + idiag[7]*s2 + idiag[11]*s3 + idiag[15]*s4;
553b01c7715SBarry Smith         idiag   -= 16;
554b01c7715SBarry Smith         i2      -= 4;
555b01c7715SBarry Smith       }
556dc0b31edSSatish Balay       ierr = PetscLogFlops(16.0*(a->nz));CHKERRQ(ierr);
557b01c7715SBarry Smith     }
558b01c7715SBarry Smith   } else {
559634064b4SBarry Smith     SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess");
560b01c7715SBarry Smith   }
5611ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
5621ebc52fbSHong Zhang   ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
563b01c7715SBarry Smith   PetscFunctionReturn(0);
564b01c7715SBarry Smith }
565b01c7715SBarry Smith 
566b01c7715SBarry Smith #undef __FUNCT__
567b01c7715SBarry Smith #define __FUNCT__ "MatPBRelax_SeqBAIJ_5"
568c1ac3661SBarry Smith PetscErrorCode MatPBRelax_SeqBAIJ_5(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
569b01c7715SBarry Smith {
570b01c7715SBarry Smith   Mat_SeqBAIJ        *a = (Mat_SeqBAIJ*)A->data;
571b01c7715SBarry Smith   PetscScalar        *x,x1,x2,x3,x4,x5,s1,s2,s3,s4,s5;
572dd6ea824SBarry Smith   const MatScalar    *v,*aa = a->a, *idiag,*mdiag;
573dd6ea824SBarry Smith   const PetscScalar  *b;
574dfbe8321SBarry Smith   PetscErrorCode     ierr;
575c1ac3661SBarry Smith   PetscInt           m = a->mbs,i,i2,nz,idx;
576c1ac3661SBarry Smith   const PetscInt     *diag,*ai = a->i,*aj = a->j,*vi;
577b01c7715SBarry Smith 
578b01c7715SBarry Smith   PetscFunctionBegin;
57971f1c65dSBarry Smith   if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat");
580b01c7715SBarry Smith   its = its*lits;
58177431f27SBarry Smith   if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
582b01c7715SBarry Smith   if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift");
583b01c7715SBarry Smith   if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor");
58471f1c65dSBarry Smith   if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts");
585b01c7715SBarry Smith   if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations");
586b01c7715SBarry Smith 
587b01c7715SBarry Smith   if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);}
588b01c7715SBarry Smith 
589b01c7715SBarry Smith   diag  = a->diag;
590b01c7715SBarry Smith   idiag = a->idiag;
5911ebc52fbSHong Zhang   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
5921ebc52fbSHong Zhang   ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
593b01c7715SBarry Smith 
594b01c7715SBarry Smith   if (flag & SOR_ZERO_INITIAL_GUESS) {
595b01c7715SBarry Smith     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){
596b01c7715SBarry Smith       x[0] = b[0]*idiag[0] + b[1]*idiag[5] + b[2]*idiag[10] + b[3]*idiag[15] + b[4]*idiag[20];
597b01c7715SBarry Smith       x[1] = b[0]*idiag[1] + b[1]*idiag[6] + b[2]*idiag[11] + b[3]*idiag[16] + b[4]*idiag[21];
598b01c7715SBarry Smith       x[2] = b[0]*idiag[2] + b[1]*idiag[7] + b[2]*idiag[12] + b[3]*idiag[17] + b[4]*idiag[22];
599b01c7715SBarry Smith       x[3] = b[0]*idiag[3] + b[1]*idiag[8] + b[2]*idiag[13] + b[3]*idiag[18] + b[4]*idiag[23];
600b01c7715SBarry Smith       x[4] = b[0]*idiag[4] + b[1]*idiag[9] + b[2]*idiag[14] + b[3]*idiag[19] + b[4]*idiag[24];
601b01c7715SBarry Smith       i2     = 5;
602b01c7715SBarry Smith       idiag += 25;
603b01c7715SBarry Smith       for (i=1; i<m; i++) {
604b01c7715SBarry Smith 	v     = aa + 25*ai[i];
605b01c7715SBarry Smith 	vi    = aj + ai[i];
606b01c7715SBarry Smith 	nz    = diag[i] - ai[i];
607b01c7715SBarry Smith 	s1    = b[i2]; s2 = b[i2+1]; s3 = b[i2+2]; s4 = b[i2+3]; s5 = b[i2+4];
608b01c7715SBarry Smith 	while (nz--) {
609b01c7715SBarry Smith 	  idx  = 5*(*vi++);
610b01c7715SBarry Smith 	  x1   = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx];
611b01c7715SBarry Smith 	  s1  -= v[0]*x1 + v[5]*x2 + v[10]*x3 + v[15]*x4 + v[20]*x5;
612b01c7715SBarry Smith 	  s2  -= v[1]*x1 + v[6]*x2 + v[11]*x3 + v[16]*x4 + v[21]*x5;
613b01c7715SBarry Smith 	  s3  -= v[2]*x1 + v[7]*x2 + v[12]*x3 + v[17]*x4 + v[22]*x5;
614b01c7715SBarry Smith 	  s4  -= v[3]*x1 + v[8]*x2 + v[13]*x3 + v[18]*x4 + v[23]*x5;
615b01c7715SBarry Smith 	  s5  -= v[4]*x1 + v[9]*x2 + v[14]*x3 + v[19]*x4 + v[24]*x5;
616b01c7715SBarry Smith 	  v   += 25;
617b01c7715SBarry Smith 	}
618b01c7715SBarry Smith 	x[i2]   = idiag[0]*s1 + idiag[5]*s2 + idiag[10]*s3 + idiag[15]*s4 + idiag[20]*s5;
619b01c7715SBarry Smith 	x[i2+1] = idiag[1]*s1 + idiag[6]*s2 + idiag[11]*s3 + idiag[16]*s4 + idiag[21]*s5;
620b01c7715SBarry Smith 	x[i2+2] = idiag[2]*s1 + idiag[7]*s2 + idiag[12]*s3 + idiag[17]*s4 + idiag[22]*s5;
621b01c7715SBarry Smith 	x[i2+3] = idiag[3]*s1 + idiag[8]*s2 + idiag[13]*s3 + idiag[18]*s4 + idiag[23]*s5;
622b01c7715SBarry Smith 	x[i2+4] = idiag[4]*s1 + idiag[9]*s2 + idiag[14]*s3 + idiag[19]*s4 + idiag[24]*s5;
623b01c7715SBarry Smith         idiag   += 25;
624b01c7715SBarry Smith         i2      += 5;
625b01c7715SBarry Smith       }
626b01c7715SBarry Smith       /* for logging purposes assume number of nonzero in lower half is 1/2 of total */
627dc0b31edSSatish Balay       ierr = PetscLogFlops(25.0*(a->nz));CHKERRQ(ierr);
628b01c7715SBarry Smith     }
629b01c7715SBarry Smith     if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) &&
630b01c7715SBarry Smith         (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) {
631b01c7715SBarry Smith       i2    = 0;
632b01c7715SBarry Smith       mdiag = a->idiag+25*a->mbs;
633b01c7715SBarry Smith       for (i=0; i<m; i++) {
634b01c7715SBarry Smith         x1      = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4];
635b01c7715SBarry Smith         x[i2]   = mdiag[0]*x1 + mdiag[5]*x2 + mdiag[10]*x3 + mdiag[15]*x4 + mdiag[20]*x5;
636b01c7715SBarry Smith         x[i2+1] = mdiag[1]*x1 + mdiag[6]*x2 + mdiag[11]*x3 + mdiag[16]*x4 + mdiag[21]*x5;
637b01c7715SBarry Smith         x[i2+2] = mdiag[2]*x1 + mdiag[7]*x2 + mdiag[12]*x3 + mdiag[17]*x4 + mdiag[22]*x5;
638b01c7715SBarry Smith         x[i2+3] = mdiag[3]*x1 + mdiag[8]*x2 + mdiag[13]*x3 + mdiag[18]*x4 + mdiag[23]*x5;
639b01c7715SBarry Smith         x[i2+4] = mdiag[4]*x1 + mdiag[9]*x2 + mdiag[14]*x3 + mdiag[19]*x4 + mdiag[24]*x5;
640b01c7715SBarry Smith         mdiag  += 25;
641b01c7715SBarry Smith         i2     += 5;
642b01c7715SBarry Smith       }
643dc0b31edSSatish Balay       ierr = PetscLogFlops(45.0*m);CHKERRQ(ierr);
644b01c7715SBarry Smith     } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
645d0f46423SBarry Smith       ierr = PetscMemcpy(x,b,A->rmap->N*sizeof(PetscScalar));CHKERRQ(ierr);
646b01c7715SBarry Smith     }
647b01c7715SBarry Smith     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){
648b01c7715SBarry Smith       idiag   = a->idiag+25*a->mbs - 25;
649b01c7715SBarry Smith       i2      = 5*m - 5;
650b01c7715SBarry Smith       x1      = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4];
651b01c7715SBarry Smith       x[i2]   = idiag[0]*x1 + idiag[5]*x2 + idiag[10]*x3 + idiag[15]*x4 + idiag[20]*x5;
652b01c7715SBarry Smith       x[i2+1] = idiag[1]*x1 + idiag[6]*x2 + idiag[11]*x3 + idiag[16]*x4 + idiag[21]*x5;
653b01c7715SBarry Smith       x[i2+2] = idiag[2]*x1 + idiag[7]*x2 + idiag[12]*x3 + idiag[17]*x4 + idiag[22]*x5;
654b01c7715SBarry Smith       x[i2+3] = idiag[3]*x1 + idiag[8]*x2 + idiag[13]*x3 + idiag[18]*x4 + idiag[23]*x5;
655b01c7715SBarry Smith       x[i2+4] = idiag[4]*x1 + idiag[9]*x2 + idiag[14]*x3 + idiag[19]*x4 + idiag[24]*x5;
656b01c7715SBarry Smith       idiag -= 25;
657b01c7715SBarry Smith       i2    -= 5;
658b01c7715SBarry Smith       for (i=m-2; i>=0; i--) {
659b01c7715SBarry Smith 	v     = aa + 25*(diag[i]+1);
660b01c7715SBarry Smith 	vi    = aj + diag[i] + 1;
661b01c7715SBarry Smith 	nz    = ai[i+1] - diag[i] - 1;
662b01c7715SBarry Smith 	s1    = x[i2]; s2 = x[i2+1]; s3 = x[i2+2]; s4 = x[i2+3]; s5 = x[i2+4];
663b01c7715SBarry Smith 	while (nz--) {
664b01c7715SBarry Smith 	  idx  = 5*(*vi++);
665b01c7715SBarry Smith 	  x1   = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx];
666b01c7715SBarry Smith 	  s1  -= v[0]*x1 + v[5]*x2 + v[10]*x3 + v[15]*x4 + v[20]*x5;
667b01c7715SBarry Smith 	  s2  -= v[1]*x1 + v[6]*x2 + v[11]*x3 + v[16]*x4 + v[21]*x5;
668b01c7715SBarry Smith 	  s3  -= v[2]*x1 + v[7]*x2 + v[12]*x3 + v[17]*x4 + v[22]*x5;
669b01c7715SBarry Smith 	  s4  -= v[3]*x1 + v[8]*x2 + v[13]*x3 + v[18]*x4 + v[23]*x5;
670b01c7715SBarry Smith 	  s5  -= v[4]*x1 + v[9]*x2 + v[14]*x3 + v[19]*x4 + v[24]*x5;
671b01c7715SBarry Smith 	  v   += 25;
672b01c7715SBarry Smith 	}
673b01c7715SBarry Smith 	x[i2]   = idiag[0]*s1 + idiag[5]*s2 + idiag[10]*s3 + idiag[15]*s4 + idiag[20]*s5;
674b01c7715SBarry Smith 	x[i2+1] = idiag[1]*s1 + idiag[6]*s2 + idiag[11]*s3 + idiag[16]*s4 + idiag[21]*s5;
675b01c7715SBarry Smith 	x[i2+2] = idiag[2]*s1 + idiag[7]*s2 + idiag[12]*s3 + idiag[17]*s4 + idiag[22]*s5;
676b01c7715SBarry Smith 	x[i2+3] = idiag[3]*s1 + idiag[8]*s2 + idiag[13]*s3 + idiag[18]*s4 + idiag[23]*s5;
677b01c7715SBarry Smith 	x[i2+4] = idiag[4]*s1 + idiag[9]*s2 + idiag[14]*s3 + idiag[19]*s4 + idiag[24]*s5;
678b01c7715SBarry Smith         idiag   -= 25;
679b01c7715SBarry Smith         i2      -= 5;
680b01c7715SBarry Smith       }
681dc0b31edSSatish Balay       ierr = PetscLogFlops(25.0*(a->nz));CHKERRQ(ierr);
682b01c7715SBarry Smith     }
683b01c7715SBarry Smith   } else {
684634064b4SBarry Smith     SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess");
685b01c7715SBarry Smith   }
6861ebc52fbSHong Zhang   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
6871ebc52fbSHong Zhang   ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
688b01c7715SBarry Smith   PetscFunctionReturn(0);
689b01c7715SBarry Smith }
690b01c7715SBarry Smith 
6916d3beeddSMatthew Knepley #undef __FUNCT__
6926d3beeddSMatthew Knepley #define __FUNCT__ "MatPBRelax_SeqBAIJ_6"
6936d3beeddSMatthew Knepley PetscErrorCode MatPBRelax_SeqBAIJ_6(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
6946d3beeddSMatthew Knepley {
6956d3beeddSMatthew Knepley   Mat_SeqBAIJ        *a = (Mat_SeqBAIJ*)A->data;
6966d3beeddSMatthew Knepley   PetscScalar        *x,x1,x2,x3,x4,x5,x6,s1,s2,s3,s4,s5,s6;
697dd6ea824SBarry Smith   const MatScalar    *v,*aa = a->a, *idiag,*mdiag;
698dd6ea824SBarry Smith   const PetscScalar  *b;
6996d3beeddSMatthew Knepley   PetscErrorCode     ierr;
7006d3beeddSMatthew Knepley   PetscInt           m = a->mbs,i,i2,nz,idx;
7016d3beeddSMatthew Knepley   const PetscInt     *diag,*ai = a->i,*aj = a->j,*vi;
7026d3beeddSMatthew Knepley 
7036d3beeddSMatthew Knepley   PetscFunctionBegin;
7046d3beeddSMatthew Knepley   if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat");
7056d3beeddSMatthew Knepley   its = its*lits;
7066d3beeddSMatthew Knepley   if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
7076d3beeddSMatthew Knepley   if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift");
7086d3beeddSMatthew Knepley   if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor");
7096d3beeddSMatthew Knepley   if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts");
7106d3beeddSMatthew Knepley   if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations");
7116d3beeddSMatthew Knepley 
7126d3beeddSMatthew Knepley   if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);}
7136d3beeddSMatthew Knepley 
7146d3beeddSMatthew Knepley   diag  = a->diag;
7156d3beeddSMatthew Knepley   idiag = a->idiag;
7166d3beeddSMatthew Knepley   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
7176d3beeddSMatthew Knepley   ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
7186d3beeddSMatthew Knepley 
7196d3beeddSMatthew Knepley   if (flag & SOR_ZERO_INITIAL_GUESS) {
7206d3beeddSMatthew Knepley     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){
7216d3beeddSMatthew Knepley       x[0] = b[0]*idiag[0] + b[1]*idiag[6]  + b[2]*idiag[12] + b[3]*idiag[18] + b[4]*idiag[24] + b[5]*idiag[30];
7226d3beeddSMatthew Knepley       x[1] = b[0]*idiag[1] + b[1]*idiag[7]  + b[2]*idiag[13] + b[3]*idiag[19] + b[4]*idiag[25] + b[5]*idiag[31];
7236d3beeddSMatthew Knepley       x[2] = b[0]*idiag[2] + b[1]*idiag[8]  + b[2]*idiag[14] + b[3]*idiag[20] + b[4]*idiag[26] + b[5]*idiag[32];
7246d3beeddSMatthew Knepley       x[3] = b[0]*idiag[3] + b[1]*idiag[9]  + b[2]*idiag[15] + b[3]*idiag[21] + b[4]*idiag[27] + b[5]*idiag[33];
7256d3beeddSMatthew Knepley       x[4] = b[0]*idiag[4] + b[1]*idiag[10] + b[2]*idiag[16] + b[3]*idiag[22] + b[4]*idiag[28] + b[5]*idiag[34];
7266d3beeddSMatthew Knepley       x[5] = b[0]*idiag[5] + b[1]*idiag[11] + b[2]*idiag[17] + b[3]*idiag[23] + b[4]*idiag[29] + b[5]*idiag[35];
7276d3beeddSMatthew Knepley       i2     = 6;
7286d3beeddSMatthew Knepley       idiag += 36;
7296d3beeddSMatthew Knepley       for (i=1; i<m; i++) {
7306d3beeddSMatthew Knepley         v     = aa + 36*ai[i];
7316d3beeddSMatthew Knepley         vi    = aj + ai[i];
7326d3beeddSMatthew Knepley         nz    = diag[i] - ai[i];
7336d3beeddSMatthew Knepley         s1    = b[i2]; s2 = b[i2+1]; s3 = b[i2+2]; s4 = b[i2+3]; s5 = b[i2+4]; s6 = b[i2+5];
7346d3beeddSMatthew Knepley         while (nz--) {
7356d3beeddSMatthew Knepley           idx  = 6*(*vi++);
7366d3beeddSMatthew Knepley           x1   = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx]; x6 = x[5+idx];
7376d3beeddSMatthew Knepley           s1  -= v[0]*x1 + v[6]*x2  + v[12]*x3 + v[18]*x4 + v[24]*x5 + v[30]*x6;
7386d3beeddSMatthew Knepley           s2  -= v[1]*x1 + v[7]*x2  + v[13]*x3 + v[19]*x4 + v[25]*x5 + v[31]*x6;
7396d3beeddSMatthew Knepley           s3  -= v[2]*x1 + v[8]*x2  + v[14]*x3 + v[20]*x4 + v[26]*x5 + v[32]*x6;
7406d3beeddSMatthew Knepley           s4  -= v[3]*x1 + v[9]*x2  + v[15]*x3 + v[21]*x4 + v[27]*x5 + v[33]*x6;
7416d3beeddSMatthew Knepley           s5  -= v[4]*x1 + v[10]*x2 + v[16]*x3 + v[22]*x4 + v[28]*x5 + v[34]*x6;
7426d3beeddSMatthew Knepley           s6  -= v[5]*x1 + v[11]*x2 + v[17]*x3 + v[23]*x4 + v[29]*x5 + v[35]*x6;
7436d3beeddSMatthew Knepley           v   += 36;
7446d3beeddSMatthew Knepley         }
7456d3beeddSMatthew Knepley         x[i2]   = idiag[0]*s1 + idiag[6]*s2  + idiag[12]*s3 + idiag[18]*s4 + idiag[24]*s5 + idiag[30]*s6;
7466d3beeddSMatthew Knepley         x[i2+1] = idiag[1]*s1 + idiag[7]*s2  + idiag[13]*s3 + idiag[19]*s4 + idiag[25]*s5 + idiag[31]*s6;
7476d3beeddSMatthew Knepley         x[i2+2] = idiag[2]*s1 + idiag[8]*s2  + idiag[14]*s3 + idiag[20]*s4 + idiag[26]*s5 + idiag[32]*s6;
7486d3beeddSMatthew Knepley         x[i2+3] = idiag[3]*s1 + idiag[9]*s2  + idiag[15]*s3 + idiag[21]*s4 + idiag[27]*s5 + idiag[33]*s6;
7496d3beeddSMatthew Knepley         x[i2+4] = idiag[4]*s1 + idiag[10]*s2 + idiag[16]*s3 + idiag[22]*s4 + idiag[28]*s5 + idiag[34]*s6;
7506d3beeddSMatthew Knepley         x[i2+5] = idiag[5]*s1 + idiag[11]*s2 + idiag[17]*s3 + idiag[23]*s4 + idiag[29]*s5 + idiag[35]*s6;
7516d3beeddSMatthew Knepley         idiag   += 36;
7526d3beeddSMatthew Knepley         i2      += 6;
7536d3beeddSMatthew Knepley       }
7546d3beeddSMatthew Knepley       /* for logging purposes assume number of nonzero in lower half is 1/2 of total */
755dc0b31edSSatish Balay       ierr = PetscLogFlops(36.0*(a->nz));CHKERRQ(ierr);
7566d3beeddSMatthew Knepley     }
7576d3beeddSMatthew Knepley     if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) &&
7586d3beeddSMatthew Knepley         (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) {
7596d3beeddSMatthew Knepley       i2    = 0;
7606d3beeddSMatthew Knepley       mdiag = a->idiag+36*a->mbs;
7616d3beeddSMatthew Knepley       for (i=0; i<m; i++) {
7626d3beeddSMatthew Knepley         x1      = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4]; x6 = x[i2+5];
7636d3beeddSMatthew Knepley         x[i2]   = mdiag[0]*x1 + mdiag[6]*x2  + mdiag[12]*x3 + mdiag[18]*x4 + mdiag[24]*x5 + mdiag[30]*x6;
7646d3beeddSMatthew Knepley         x[i2+1] = mdiag[1]*x1 + mdiag[7]*x2  + mdiag[13]*x3 + mdiag[19]*x4 + mdiag[25]*x5 + mdiag[31]*x6;
7656d3beeddSMatthew Knepley         x[i2+2] = mdiag[2]*x1 + mdiag[8]*x2  + mdiag[14]*x3 + mdiag[20]*x4 + mdiag[26]*x5 + mdiag[32]*x6;
7666d3beeddSMatthew Knepley         x[i2+3] = mdiag[3]*x1 + mdiag[9]*x2  + mdiag[15]*x3 + mdiag[21]*x4 + mdiag[27]*x5 + mdiag[33]*x6;
7676d3beeddSMatthew Knepley         x[i2+4] = mdiag[4]*x1 + mdiag[10]*x2 + mdiag[16]*x3 + mdiag[22]*x4 + mdiag[28]*x5 + mdiag[34]*x6;
7686d3beeddSMatthew Knepley         x[i2+5] = mdiag[5]*x1 + mdiag[11]*x2 + mdiag[17]*x3 + mdiag[23]*x4 + mdiag[29]*x5 + mdiag[35]*x6;
7696d3beeddSMatthew Knepley         mdiag  += 36;
7706d3beeddSMatthew Knepley         i2     += 6;
7716d3beeddSMatthew Knepley       }
772dc0b31edSSatish Balay       ierr = PetscLogFlops(60.0*m);CHKERRQ(ierr);
7736d3beeddSMatthew Knepley     } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
774d0f46423SBarry Smith       ierr = PetscMemcpy(x,b,A->rmap->N*sizeof(PetscScalar));CHKERRQ(ierr);
7756d3beeddSMatthew Knepley     }
7766d3beeddSMatthew Knepley     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){
7776d3beeddSMatthew Knepley       idiag   = a->idiag+36*a->mbs - 36;
7786d3beeddSMatthew Knepley       i2      = 6*m - 6;
7796d3beeddSMatthew Knepley       x1      = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4]; x6 = x[i2+5];
7806d3beeddSMatthew Knepley       x[i2]   = idiag[0]*x1 + idiag[6]*x2  + idiag[12]*x3 + idiag[18]*x4 + idiag[24]*x5 + idiag[30]*x6;
7816d3beeddSMatthew Knepley       x[i2+1] = idiag[1]*x1 + idiag[7]*x2  + idiag[13]*x3 + idiag[19]*x4 + idiag[25]*x5 + idiag[31]*x6;
7826d3beeddSMatthew Knepley       x[i2+2] = idiag[2]*x1 + idiag[8]*x2  + idiag[14]*x3 + idiag[20]*x4 + idiag[26]*x5 + idiag[32]*x6;
7836d3beeddSMatthew Knepley       x[i2+3] = idiag[3]*x1 + idiag[9]*x2  + idiag[15]*x3 + idiag[21]*x4 + idiag[27]*x5 + idiag[33]*x6;
7846d3beeddSMatthew Knepley       x[i2+4] = idiag[4]*x1 + idiag[10]*x2 + idiag[16]*x3 + idiag[22]*x4 + idiag[28]*x5 + idiag[34]*x6;
7856d3beeddSMatthew Knepley       x[i2+5] = idiag[5]*x1 + idiag[11]*x2 + idiag[17]*x3 + idiag[23]*x4 + idiag[29]*x5 + idiag[35]*x6;
7866d3beeddSMatthew Knepley       idiag -= 36;
7876d3beeddSMatthew Knepley       i2    -= 6;
7886d3beeddSMatthew Knepley       for (i=m-2; i>=0; i--) {
7896d3beeddSMatthew Knepley         v     = aa + 36*(diag[i]+1);
7906d3beeddSMatthew Knepley         vi    = aj + diag[i] + 1;
7916d3beeddSMatthew Knepley         nz    = ai[i+1] - diag[i] - 1;
7926d3beeddSMatthew Knepley         s1    = x[i2]; s2 = x[i2+1]; s3 = x[i2+2]; s4 = x[i2+3]; s5 = x[i2+4]; s6 = x[i2+5];
7936d3beeddSMatthew Knepley         while (nz--) {
7946d3beeddSMatthew Knepley           idx  = 6*(*vi++);
7956d3beeddSMatthew Knepley           x1   = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx]; x6 = x[5+idx];
7966d3beeddSMatthew Knepley           s1  -= v[0]*x1 + v[6]*x2  + v[12]*x3 + v[18]*x4 + v[24]*x5 + v[30]*x6;
7976d3beeddSMatthew Knepley           s2  -= v[1]*x1 + v[7]*x2  + v[13]*x3 + v[19]*x4 + v[25]*x5 + v[31]*x6;
7986d3beeddSMatthew Knepley           s3  -= v[2]*x1 + v[8]*x2  + v[14]*x3 + v[20]*x4 + v[26]*x5 + v[32]*x6;
7996d3beeddSMatthew Knepley           s4  -= v[3]*x1 + v[9]*x2  + v[15]*x3 + v[21]*x4 + v[27]*x5 + v[33]*x6;
8006d3beeddSMatthew Knepley           s5  -= v[4]*x1 + v[10]*x2 + v[16]*x3 + v[22]*x4 + v[28]*x5 + v[34]*x6;
8016d3beeddSMatthew Knepley           s6  -= v[5]*x1 + v[11]*x2 + v[17]*x3 + v[23]*x4 + v[29]*x5 + v[35]*x6;
8026d3beeddSMatthew Knepley           v   += 36;
8036d3beeddSMatthew Knepley         }
8046d3beeddSMatthew Knepley         x[i2]   = idiag[0]*s1 + idiag[6]*s2  + idiag[12]*s3 + idiag[18]*s4 + idiag[24]*s5 + idiag[30]*s6;
8056d3beeddSMatthew Knepley         x[i2+1] = idiag[1]*s1 + idiag[7]*s2  + idiag[13]*s3 + idiag[19]*s4 + idiag[25]*s5 + idiag[31]*s6;
8066d3beeddSMatthew Knepley         x[i2+2] = idiag[2]*s1 + idiag[8]*s2  + idiag[14]*s3 + idiag[20]*s4 + idiag[26]*s5 + idiag[32]*s6;
8076d3beeddSMatthew Knepley         x[i2+3] = idiag[3]*s1 + idiag[9]*s2  + idiag[15]*s3 + idiag[21]*s4 + idiag[27]*s5 + idiag[33]*s6;
8086d3beeddSMatthew Knepley         x[i2+4] = idiag[4]*s1 + idiag[10]*s2 + idiag[16]*s3 + idiag[22]*s4 + idiag[28]*s5 + idiag[34]*s6;
8096d3beeddSMatthew Knepley         x[i2+5] = idiag[5]*s1 + idiag[11]*s2 + idiag[17]*s3 + idiag[23]*s4 + idiag[29]*s5 + idiag[35]*s6;
8106d3beeddSMatthew Knepley         idiag   -= 36;
8116d3beeddSMatthew Knepley         i2      -= 6;
8126d3beeddSMatthew Knepley       }
813dc0b31edSSatish Balay       ierr = PetscLogFlops(36.0*(a->nz));CHKERRQ(ierr);
8146d3beeddSMatthew Knepley     }
8156d3beeddSMatthew Knepley   } else {
8166d3beeddSMatthew Knepley     SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess");
8176d3beeddSMatthew Knepley   }
8186d3beeddSMatthew Knepley   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
8196d3beeddSMatthew Knepley   ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
8206d3beeddSMatthew Knepley   PetscFunctionReturn(0);
8216d3beeddSMatthew Knepley }
8226d3beeddSMatthew Knepley 
8236d3beeddSMatthew Knepley #undef __FUNCT__
8246d3beeddSMatthew Knepley #define __FUNCT__ "MatPBRelax_SeqBAIJ_7"
8256d3beeddSMatthew Knepley PetscErrorCode MatPBRelax_SeqBAIJ_7(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
8266d3beeddSMatthew Knepley {
8276d3beeddSMatthew Knepley   Mat_SeqBAIJ        *a = (Mat_SeqBAIJ*)A->data;
8286d3beeddSMatthew Knepley   PetscScalar        *x,x1,x2,x3,x4,x5,x6,x7,s1,s2,s3,s4,s5,s6,s7;
829dd6ea824SBarry Smith   const MatScalar    *v,*aa = a->a, *idiag,*mdiag;
830dd6ea824SBarry Smith   const PetscScalar  *b;
8316d3beeddSMatthew Knepley   PetscErrorCode     ierr;
8326d3beeddSMatthew Knepley   PetscInt           m = a->mbs,i,i2,nz,idx;
8336d3beeddSMatthew Knepley   const PetscInt     *diag,*ai = a->i,*aj = a->j,*vi;
8346d3beeddSMatthew Knepley 
8356d3beeddSMatthew Knepley   PetscFunctionBegin;
8366d3beeddSMatthew Knepley   if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat");
8376d3beeddSMatthew Knepley   its = its*lits;
8386d3beeddSMatthew Knepley   if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits);
8396d3beeddSMatthew Knepley   if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift");
8406d3beeddSMatthew Knepley   if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor");
8416d3beeddSMatthew Knepley   if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts");
8426d3beeddSMatthew Knepley   if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations");
8436d3beeddSMatthew Knepley 
8446d3beeddSMatthew Knepley   if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);}
8456d3beeddSMatthew Knepley 
8466d3beeddSMatthew Knepley   diag  = a->diag;
8476d3beeddSMatthew Knepley   idiag = a->idiag;
8486d3beeddSMatthew Knepley   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
8496d3beeddSMatthew Knepley   ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
8506d3beeddSMatthew Knepley 
8516d3beeddSMatthew Knepley   if (flag & SOR_ZERO_INITIAL_GUESS) {
8526d3beeddSMatthew Knepley     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){
8536d3beeddSMatthew Knepley       x[0] = b[0]*idiag[0] + b[1]*idiag[7]  + b[2]*idiag[14] + b[3]*idiag[21] + b[4]*idiag[28] + b[5]*idiag[35] + b[6]*idiag[42];
8546d3beeddSMatthew Knepley       x[1] = b[0]*idiag[1] + b[1]*idiag[8]  + b[2]*idiag[15] + b[3]*idiag[22] + b[4]*idiag[29] + b[5]*idiag[36] + b[6]*idiag[43];
8556d3beeddSMatthew Knepley       x[2] = b[0]*idiag[2] + b[1]*idiag[9]  + b[2]*idiag[16] + b[3]*idiag[23] + b[4]*idiag[30] + b[5]*idiag[37] + b[6]*idiag[44];
8566d3beeddSMatthew Knepley       x[3] = b[0]*idiag[3] + b[1]*idiag[10] + b[2]*idiag[17] + b[3]*idiag[24] + b[4]*idiag[31] + b[5]*idiag[38] + b[6]*idiag[45];
8576d3beeddSMatthew Knepley       x[4] = b[0]*idiag[4] + b[1]*idiag[11] + b[2]*idiag[18] + b[3]*idiag[25] + b[4]*idiag[32] + b[5]*idiag[39] + b[6]*idiag[46];
8586d3beeddSMatthew Knepley       x[5] = b[0]*idiag[5] + b[1]*idiag[12] + b[2]*idiag[19] + b[3]*idiag[26] + b[4]*idiag[33] + b[5]*idiag[40] + b[6]*idiag[47];
8596d3beeddSMatthew Knepley       x[6] = b[0]*idiag[6] + b[1]*idiag[13] + b[2]*idiag[20] + b[3]*idiag[27] + b[4]*idiag[34] + b[5]*idiag[41] + b[6]*idiag[48];
8606d3beeddSMatthew Knepley       i2     = 7;
8616d3beeddSMatthew Knepley       idiag += 49;
8626d3beeddSMatthew Knepley       for (i=1; i<m; i++) {
8636d3beeddSMatthew Knepley         v     = aa + 49*ai[i];
8646d3beeddSMatthew Knepley         vi    = aj + ai[i];
8656d3beeddSMatthew Knepley         nz    = diag[i] - ai[i];
8666d3beeddSMatthew Knepley         s1    = b[i2]; s2 = b[i2+1]; s3 = b[i2+2]; s4 = b[i2+3]; s5 = b[i2+4]; s6 = b[i2+5]; s7 = b[i2+6];
8676d3beeddSMatthew Knepley         while (nz--) {
8686d3beeddSMatthew Knepley           idx  = 7*(*vi++);
8696d3beeddSMatthew Knepley           x1   = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx]; x6 = x[5+idx]; x7 = x[6+idx];
8706d3beeddSMatthew Knepley           s1  -= v[0]*x1 + v[7]*x2  + v[14]*x3 + v[21]*x4 + v[28]*x5 + v[35]*x6 + v[42]*x7;
8716d3beeddSMatthew Knepley           s2  -= v[1]*x1 + v[8]*x2  + v[15]*x3 + v[22]*x4 + v[29]*x5 + v[36]*x6 + v[43]*x7;
8726d3beeddSMatthew Knepley           s3  -= v[2]*x1 + v[9]*x2  + v[16]*x3 + v[23]*x4 + v[30]*x5 + v[37]*x6 + v[44]*x7;
8736d3beeddSMatthew Knepley           s4  -= v[3]*x1 + v[10]*x2 + v[17]*x3 + v[24]*x4 + v[31]*x5 + v[38]*x6 + v[45]*x7;
8746d3beeddSMatthew Knepley           s5  -= v[4]*x1 + v[11]*x2 + v[18]*x3 + v[25]*x4 + v[32]*x5 + v[39]*x6 + v[46]*x7;
8756d3beeddSMatthew Knepley           s6  -= v[5]*x1 + v[12]*x2 + v[19]*x3 + v[26]*x4 + v[33]*x5 + v[40]*x6 + v[47]*x7;
8766d3beeddSMatthew Knepley           s7  -= v[6]*x1 + v[13]*x2 + v[20]*x3 + v[27]*x4 + v[34]*x5 + v[41]*x6 + v[48]*x7;
8776d3beeddSMatthew Knepley           v   += 49;
8786d3beeddSMatthew Knepley         }
8796d3beeddSMatthew Knepley         x[i2]   = idiag[0]*s1 + idiag[7]*s2  + idiag[14]*s3 + idiag[21]*s4 + idiag[28]*s5 + idiag[35]*s6 + idiag[42]*s7;
8806d3beeddSMatthew Knepley         x[i2+1] = idiag[1]*s1 + idiag[8]*s2  + idiag[15]*s3 + idiag[22]*s4 + idiag[29]*s5 + idiag[36]*s6 + idiag[43]*s7;
8816d3beeddSMatthew Knepley         x[i2+2] = idiag[2]*s1 + idiag[9]*s2  + idiag[16]*s3 + idiag[23]*s4 + idiag[30]*s5 + idiag[37]*s6 + idiag[44]*s7;
8826d3beeddSMatthew Knepley         x[i2+3] = idiag[3]*s1 + idiag[10]*s2 + idiag[17]*s3 + idiag[24]*s4 + idiag[31]*s5 + idiag[38]*s6 + idiag[45]*s7;
8836d3beeddSMatthew Knepley         x[i2+4] = idiag[4]*s1 + idiag[11]*s2 + idiag[18]*s3 + idiag[25]*s4 + idiag[32]*s5 + idiag[39]*s6 + idiag[46]*s7;
8846d3beeddSMatthew Knepley         x[i2+5] = idiag[5]*s1 + idiag[12]*s2 + idiag[19]*s3 + idiag[26]*s4 + idiag[33]*s5 + idiag[40]*s6 + idiag[47]*s7;
8856d3beeddSMatthew Knepley         x[i2+6] = idiag[6]*s1 + idiag[13]*s2 + idiag[20]*s3 + idiag[27]*s4 + idiag[34]*s5 + idiag[41]*s6 + idiag[48]*s7;
8866d3beeddSMatthew Knepley         idiag   += 49;
8876d3beeddSMatthew Knepley         i2      += 7;
8886d3beeddSMatthew Knepley       }
8896d3beeddSMatthew Knepley       /* for logging purposes assume number of nonzero in lower half is 1/2 of total */
890dc0b31edSSatish Balay       ierr = PetscLogFlops(49.0*(a->nz));CHKERRQ(ierr);
8916d3beeddSMatthew Knepley     }
8926d3beeddSMatthew Knepley     if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) &&
8936d3beeddSMatthew Knepley         (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) {
8946d3beeddSMatthew Knepley       i2    = 0;
8956d3beeddSMatthew Knepley       mdiag = a->idiag+49*a->mbs;
8966d3beeddSMatthew Knepley       for (i=0; i<m; i++) {
8976d3beeddSMatthew Knepley         x1      = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4]; x6 = x[i2+5]; x7 = x[i2+6];
8986d3beeddSMatthew Knepley         x[i2]   = mdiag[0]*x1 + mdiag[7]*x2  + mdiag[14]*x3 + mdiag[21]*x4 + mdiag[28]*x5 + mdiag[35]*x6 + mdiag[35]*x7;
8996d3beeddSMatthew Knepley         x[i2+1] = mdiag[1]*x1 + mdiag[8]*x2  + mdiag[15]*x3 + mdiag[22]*x4 + mdiag[29]*x5 + mdiag[36]*x6 + mdiag[36]*x7;
9006d3beeddSMatthew Knepley         x[i2+2] = mdiag[2]*x1 + mdiag[9]*x2  + mdiag[16]*x3 + mdiag[23]*x4 + mdiag[30]*x5 + mdiag[37]*x6 + mdiag[37]*x7;
9016d3beeddSMatthew Knepley         x[i2+3] = mdiag[3]*x1 + mdiag[10]*x2 + mdiag[17]*x3 + mdiag[24]*x4 + mdiag[31]*x5 + mdiag[38]*x6 + mdiag[38]*x7;
9026d3beeddSMatthew Knepley         x[i2+4] = mdiag[4]*x1 + mdiag[11]*x2 + mdiag[18]*x3 + mdiag[25]*x4 + mdiag[32]*x5 + mdiag[39]*x6 + mdiag[39]*x7;
9036d3beeddSMatthew Knepley         x[i2+5] = mdiag[5]*x1 + mdiag[12]*x2 + mdiag[19]*x3 + mdiag[26]*x4 + mdiag[33]*x5 + mdiag[40]*x6 + mdiag[40]*x7;
9046d3beeddSMatthew Knepley         x[i2+6] = mdiag[6]*x1 + mdiag[13]*x2 + mdiag[20]*x3 + mdiag[27]*x4 + mdiag[34]*x5 + mdiag[41]*x6 + mdiag[41]*x7;
9056d3beeddSMatthew Knepley         mdiag  += 36;
9066d3beeddSMatthew Knepley         i2     += 6;
9076d3beeddSMatthew Knepley       }
908dc0b31edSSatish Balay       ierr = PetscLogFlops(93.0*m);CHKERRQ(ierr);
9096d3beeddSMatthew Knepley     } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
910d0f46423SBarry Smith       ierr = PetscMemcpy(x,b,A->rmap->N*sizeof(PetscScalar));CHKERRQ(ierr);
9116d3beeddSMatthew Knepley     }
9126d3beeddSMatthew Knepley     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){
9136d3beeddSMatthew Knepley       idiag   = a->idiag+49*a->mbs - 49;
9146d3beeddSMatthew Knepley       i2      = 7*m - 7;
9156d3beeddSMatthew Knepley       x1      = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4]; x6 = x[i2+5]; x7 = x[i2+6];
9166d3beeddSMatthew Knepley       x[i2]   = idiag[0]*x1 + idiag[7]*x2  + idiag[14]*x3 + idiag[21]*x4 + idiag[28]*x5 + idiag[35]*x6 + idiag[42]*x7;
9176d3beeddSMatthew Knepley       x[i2+1] = idiag[1]*x1 + idiag[8]*x2  + idiag[15]*x3 + idiag[22]*x4 + idiag[29]*x5 + idiag[36]*x6 + idiag[43]*x7;
9186d3beeddSMatthew Knepley       x[i2+2] = idiag[2]*x1 + idiag[9]*x2  + idiag[16]*x3 + idiag[23]*x4 + idiag[30]*x5 + idiag[37]*x6 + idiag[44]*x7;
9196d3beeddSMatthew Knepley       x[i2+3] = idiag[3]*x1 + idiag[10]*x2 + idiag[17]*x3 + idiag[24]*x4 + idiag[31]*x5 + idiag[38]*x6 + idiag[45]*x7;
9206d3beeddSMatthew Knepley       x[i2+4] = idiag[4]*x1 + idiag[11]*x2 + idiag[18]*x3 + idiag[25]*x4 + idiag[32]*x5 + idiag[39]*x6 + idiag[46]*x7;
9216d3beeddSMatthew Knepley       x[i2+5] = idiag[5]*x1 + idiag[12]*x2 + idiag[19]*x3 + idiag[26]*x4 + idiag[33]*x5 + idiag[40]*x6 + idiag[47]*x7;
9226d3beeddSMatthew Knepley       x[i2+6] = idiag[6]*x1 + idiag[13]*x2 + idiag[20]*x3 + idiag[27]*x4 + idiag[34]*x5 + idiag[41]*x6 + idiag[48]*x7;
9236d3beeddSMatthew Knepley       idiag -= 49;
9246d3beeddSMatthew Knepley       i2    -= 7;
9256d3beeddSMatthew Knepley       for (i=m-2; i>=0; i--) {
9266d3beeddSMatthew Knepley         v     = aa + 49*(diag[i]+1);
9276d3beeddSMatthew Knepley         vi    = aj + diag[i] + 1;
9286d3beeddSMatthew Knepley         nz    = ai[i+1] - diag[i] - 1;
9296d3beeddSMatthew Knepley         s1    = x[i2]; s2 = x[i2+1]; s3 = x[i2+2]; s4 = x[i2+3]; s5 = x[i2+4]; s6 = x[i2+5]; s7 = x[i2+6];
9306d3beeddSMatthew Knepley         while (nz--) {
9316d3beeddSMatthew Knepley           idx  = 7*(*vi++);
9326d3beeddSMatthew Knepley           x1   = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx]; x6 = x[5+idx]; x7 = x[6+idx];
9336d3beeddSMatthew Knepley           s1  -= v[0]*x1 + v[7]*x2  + v[14]*x3 + v[21]*x4 + v[28]*x5 + v[35]*x6 + v[42]*x7;
9346d3beeddSMatthew Knepley           s2  -= v[1]*x1 + v[8]*x2  + v[15]*x3 + v[22]*x4 + v[29]*x5 + v[36]*x6 + v[43]*x7;
9356d3beeddSMatthew Knepley           s3  -= v[2]*x1 + v[9]*x2  + v[16]*x3 + v[23]*x4 + v[30]*x5 + v[37]*x6 + v[44]*x7;
9366d3beeddSMatthew Knepley           s4  -= v[3]*x1 + v[10]*x2 + v[17]*x3 + v[24]*x4 + v[31]*x5 + v[38]*x6 + v[45]*x7;
9376d3beeddSMatthew Knepley           s5  -= v[4]*x1 + v[11]*x2 + v[18]*x3 + v[25]*x4 + v[32]*x5 + v[39]*x6 + v[46]*x7;
9386d3beeddSMatthew Knepley           s6  -= v[5]*x1 + v[12]*x2 + v[19]*x3 + v[26]*x4 + v[33]*x5 + v[40]*x6 + v[47]*x7;
9396d3beeddSMatthew Knepley           s7  -= v[6]*x1 + v[13]*x2 + v[20]*x3 + v[27]*x4 + v[34]*x5 + v[41]*x6 + v[48]*x7;
9406d3beeddSMatthew Knepley           v   += 49;
9416d3beeddSMatthew Knepley         }
9426d3beeddSMatthew Knepley         x[i2]   = idiag[0]*s1 + idiag[7]*s2  + idiag[14]*s3 + idiag[21]*s4 + idiag[28]*s5 + idiag[35]*s6 + idiag[42]*s7;
9436d3beeddSMatthew Knepley         x[i2+1] = idiag[1]*s1 + idiag[8]*s2  + idiag[15]*s3 + idiag[22]*s4 + idiag[29]*s5 + idiag[36]*s6 + idiag[43]*s7;
9446d3beeddSMatthew Knepley         x[i2+2] = idiag[2]*s1 + idiag[9]*s2  + idiag[16]*s3 + idiag[23]*s4 + idiag[30]*s5 + idiag[37]*s6 + idiag[44]*s7;
9456d3beeddSMatthew Knepley         x[i2+3] = idiag[3]*s1 + idiag[10]*s2 + idiag[17]*s3 + idiag[24]*s4 + idiag[31]*s5 + idiag[38]*s6 + idiag[45]*s7;
9466d3beeddSMatthew Knepley         x[i2+4] = idiag[4]*s1 + idiag[11]*s2 + idiag[18]*s3 + idiag[25]*s4 + idiag[32]*s5 + idiag[39]*s6 + idiag[46]*s7;
9476d3beeddSMatthew Knepley         x[i2+5] = idiag[5]*s1 + idiag[12]*s2 + idiag[19]*s3 + idiag[26]*s4 + idiag[33]*s5 + idiag[40]*s6 + idiag[47]*s7;
9486d3beeddSMatthew Knepley         x[i2+6] = idiag[6]*s1 + idiag[13]*s2 + idiag[20]*s3 + idiag[27]*s4 + idiag[34]*s5 + idiag[41]*s6 + idiag[48]*s7;
9496d3beeddSMatthew Knepley         idiag   -= 49;
9506d3beeddSMatthew Knepley         i2      -= 7;
9516d3beeddSMatthew Knepley       }
952dc0b31edSSatish Balay       ierr = PetscLogFlops(49.0*(a->nz));CHKERRQ(ierr);
9536d3beeddSMatthew Knepley     }
9546d3beeddSMatthew Knepley   } else {
9556d3beeddSMatthew Knepley     SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess");
9566d3beeddSMatthew Knepley   }
9576d3beeddSMatthew Knepley   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
9586d3beeddSMatthew Knepley   ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr);
9596d3beeddSMatthew Knepley   PetscFunctionReturn(0);
9606d3beeddSMatthew Knepley }
9616d3beeddSMatthew Knepley 
962af674e45SBarry Smith /*
96381824310SBarry Smith     Special version for direct calls from Fortran (Used in PETSc-fun3d)
964af674e45SBarry Smith */
965af674e45SBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS)
966af674e45SBarry Smith #define matsetvaluesblocked4_ MATSETVALUESBLOCKED4
967af674e45SBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
968af674e45SBarry Smith #define matsetvaluesblocked4_ matsetvaluesblocked4
969af674e45SBarry Smith #endif
970af674e45SBarry Smith 
9719c8c1041SBarry Smith EXTERN_C_BEGIN
972af674e45SBarry Smith #undef __FUNCT__
973af674e45SBarry Smith #define __FUNCT__ "matsetvaluesblocked4_"
974be1d678aSKris Buschelman void PETSCMAT_DLLEXPORT matsetvaluesblocked4_(Mat *AA,PetscInt *mm,const PetscInt im[],PetscInt *nn,const PetscInt in[],const PetscScalar v[])
975af674e45SBarry Smith {
976af674e45SBarry Smith   Mat               A = *AA;
977af674e45SBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
978c1ac3661SBarry Smith   PetscInt          *rp,k,low,high,t,ii,jj,row,nrow,i,col,l,N,m = *mm,n = *nn;
979c1ac3661SBarry Smith   PetscInt          *ai=a->i,*ailen=a->ilen;
98017ec6a02SBarry Smith   PetscInt          *aj=a->j,stepval,lastcol = -1;
981f15d580aSBarry Smith   const PetscScalar *value = v;
9824bb09213Spetsc   MatScalar         *ap,*aa = a->a,*bap;
983af674e45SBarry Smith 
984af674e45SBarry Smith   PetscFunctionBegin;
985d0f46423SBarry Smith   if (A->rmap->bs != 4) SETERRABORT(((PetscObject)A)->comm,PETSC_ERR_ARG_WRONG,"Can only be called with a block size of 4");
986af674e45SBarry Smith   stepval = (n-1)*4;
987af674e45SBarry Smith   for (k=0; k<m; k++) { /* loop over added rows */
988af674e45SBarry Smith     row  = im[k];
989af674e45SBarry Smith     rp   = aj + ai[row];
990af674e45SBarry Smith     ap   = aa + 16*ai[row];
991af674e45SBarry Smith     nrow = ailen[row];
992af674e45SBarry Smith     low  = 0;
99317ec6a02SBarry Smith     high = nrow;
994af674e45SBarry Smith     for (l=0; l<n; l++) { /* loop over added columns */
995af674e45SBarry Smith       col = in[l];
99617ec6a02SBarry Smith       if (col <= lastcol) low = 0; else high = nrow;
99717ec6a02SBarry Smith       lastcol = col;
9981e3347e8SBarry Smith       value = v + k*(stepval+4 + l)*4;
999af674e45SBarry Smith       while (high-low > 7) {
1000af674e45SBarry Smith         t = (low+high)/2;
1001af674e45SBarry Smith         if (rp[t] > col) high = t;
1002af674e45SBarry Smith         else             low  = t;
1003af674e45SBarry Smith       }
1004af674e45SBarry Smith       for (i=low; i<high; i++) {
1005af674e45SBarry Smith         if (rp[i] > col) break;
1006af674e45SBarry Smith         if (rp[i] == col) {
1007af674e45SBarry Smith           bap  = ap +  16*i;
1008af674e45SBarry Smith           for (ii=0; ii<4; ii++,value+=stepval) {
1009af674e45SBarry Smith             for (jj=ii; jj<16; jj+=4) {
1010af674e45SBarry Smith               bap[jj] += *value++;
1011af674e45SBarry Smith             }
1012af674e45SBarry Smith           }
1013af674e45SBarry Smith           goto noinsert2;
1014af674e45SBarry Smith         }
1015af674e45SBarry Smith       }
1016af674e45SBarry Smith       N = nrow++ - 1;
101717ec6a02SBarry Smith       high++; /* added new column index thus must search to one higher than before */
1018af674e45SBarry Smith       /* shift up all the later entries in this row */
1019af674e45SBarry Smith       for (ii=N; ii>=i; ii--) {
1020af674e45SBarry Smith         rp[ii+1] = rp[ii];
1021a037b02bSBarry Smith         PetscMemcpy(ap+16*(ii+1),ap+16*(ii),16*sizeof(MatScalar));
1022af674e45SBarry Smith       }
1023af674e45SBarry Smith       if (N >= i) {
1024a037b02bSBarry Smith         PetscMemzero(ap+16*i,16*sizeof(MatScalar));
1025af674e45SBarry Smith       }
1026af674e45SBarry Smith       rp[i] = col;
1027af674e45SBarry Smith       bap   = ap +  16*i;
1028af674e45SBarry Smith       for (ii=0; ii<4; ii++,value+=stepval) {
1029af674e45SBarry Smith         for (jj=ii; jj<16; jj+=4) {
1030af674e45SBarry Smith           bap[jj] = *value++;
1031af674e45SBarry Smith         }
1032af674e45SBarry Smith       }
1033af674e45SBarry Smith       noinsert2:;
1034af674e45SBarry Smith       low = i;
1035af674e45SBarry Smith     }
1036af674e45SBarry Smith     ailen[row] = nrow;
1037af674e45SBarry Smith   }
1038be1d678aSKris Buschelman   PetscFunctionReturnVoid();
1039af674e45SBarry Smith }
10409c8c1041SBarry Smith EXTERN_C_END
1041af674e45SBarry Smith 
1042af674e45SBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS)
1043af674e45SBarry Smith #define matsetvalues4_ MATSETVALUES4
1044af674e45SBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
1045af674e45SBarry Smith #define matsetvalues4_ matsetvalues4
1046af674e45SBarry Smith #endif
1047af674e45SBarry Smith 
10489c8c1041SBarry Smith EXTERN_C_BEGIN
1049af674e45SBarry Smith #undef __FUNCT__
1050af674e45SBarry Smith #define __FUNCT__ "MatSetValues4_"
1051be1d678aSKris Buschelman void PETSCMAT_DLLEXPORT matsetvalues4_(Mat *AA,PetscInt *mm,PetscInt *im,PetscInt *nn,PetscInt *in,PetscScalar *v)
1052af674e45SBarry Smith {
1053af674e45SBarry Smith   Mat         A = *AA;
1054af674e45SBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data;
1055c1ac3661SBarry Smith   PetscInt    *rp,k,low,high,t,ii,row,nrow,i,col,l,N,n = *nn,m = *mm;
1056c1ac3661SBarry Smith   PetscInt    *ai=a->i,*ailen=a->ilen;
1057c1ac3661SBarry Smith   PetscInt    *aj=a->j,brow,bcol;
105817ec6a02SBarry Smith   PetscInt    ridx,cidx,lastcol = -1;
1059af674e45SBarry Smith   MatScalar   *ap,value,*aa=a->a,*bap;
1060af674e45SBarry Smith 
1061af674e45SBarry Smith   PetscFunctionBegin;
1062af674e45SBarry Smith   for (k=0; k<m; k++) { /* loop over added rows */
1063af674e45SBarry Smith     row  = im[k]; brow = row/4;
1064af674e45SBarry Smith     rp   = aj + ai[brow];
1065af674e45SBarry Smith     ap   = aa + 16*ai[brow];
1066af674e45SBarry Smith     nrow = ailen[brow];
1067af674e45SBarry Smith     low  = 0;
106817ec6a02SBarry Smith     high = nrow;
1069af674e45SBarry Smith     for (l=0; l<n; l++) { /* loop over added columns */
1070af674e45SBarry Smith       col = in[l]; bcol = col/4;
1071af674e45SBarry Smith       ridx = row % 4; cidx = col % 4;
1072af674e45SBarry Smith       value = v[l + k*n];
107317ec6a02SBarry Smith       if (col <= lastcol) low = 0; else high = nrow;
107417ec6a02SBarry Smith       lastcol = col;
1075af674e45SBarry Smith       while (high-low > 7) {
1076af674e45SBarry Smith         t = (low+high)/2;
1077af674e45SBarry Smith         if (rp[t] > bcol) high = t;
1078af674e45SBarry Smith         else              low  = t;
1079af674e45SBarry Smith       }
1080af674e45SBarry Smith       for (i=low; i<high; i++) {
1081af674e45SBarry Smith         if (rp[i] > bcol) break;
1082af674e45SBarry Smith         if (rp[i] == bcol) {
1083af674e45SBarry Smith           bap  = ap +  16*i + 4*cidx + ridx;
1084af674e45SBarry Smith           *bap += value;
1085af674e45SBarry Smith           goto noinsert1;
1086af674e45SBarry Smith         }
1087af674e45SBarry Smith       }
1088af674e45SBarry Smith       N = nrow++ - 1;
108917ec6a02SBarry Smith       high++; /* added new column thus must search to one higher than before */
1090af674e45SBarry Smith       /* shift up all the later entries in this row */
1091af674e45SBarry Smith       for (ii=N; ii>=i; ii--) {
1092af674e45SBarry Smith         rp[ii+1] = rp[ii];
1093a037b02bSBarry Smith         PetscMemcpy(ap+16*(ii+1),ap+16*(ii),16*sizeof(MatScalar));
1094af674e45SBarry Smith       }
1095af674e45SBarry Smith       if (N>=i) {
1096a037b02bSBarry Smith         PetscMemzero(ap+16*i,16*sizeof(MatScalar));
1097af674e45SBarry Smith       }
1098af674e45SBarry Smith       rp[i]                    = bcol;
1099af674e45SBarry Smith       ap[16*i + 4*cidx + ridx] = value;
1100af674e45SBarry Smith       noinsert1:;
1101af674e45SBarry Smith       low = i;
1102af674e45SBarry Smith     }
1103af674e45SBarry Smith     ailen[brow] = nrow;
1104af674e45SBarry Smith   }
1105be1d678aSKris Buschelman   PetscFunctionReturnVoid();
1106af674e45SBarry Smith }
11079c8c1041SBarry Smith EXTERN_C_END
1108af674e45SBarry Smith 
1109be5855fcSBarry Smith /*
1110be5855fcSBarry Smith      Checks for missing diagonals
1111be5855fcSBarry Smith */
11124a2ae208SSatish Balay #undef __FUNCT__
11134a2ae208SSatish Balay #define __FUNCT__ "MatMissingDiagonal_SeqBAIJ"
11142af78befSBarry Smith PetscErrorCode MatMissingDiagonal_SeqBAIJ(Mat A,PetscTruth *missing,PetscInt *d)
1115be5855fcSBarry Smith {
1116be5855fcSBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
11176849ba73SBarry Smith   PetscErrorCode ierr;
1118c1ac3661SBarry Smith   PetscInt       *diag,*jj = a->j,i;
1119be5855fcSBarry Smith 
1120be5855fcSBarry Smith   PetscFunctionBegin;
1121c4992f7dSBarry Smith   ierr = MatMarkDiagonal_SeqBAIJ(A);CHKERRQ(ierr);
11222af78befSBarry Smith   *missing = PETSC_FALSE;
11232efa7f71SHong Zhang   if (A->rmap->n > 0 && !jj) {
11242efa7f71SHong Zhang     *missing  = PETSC_TRUE;
11252efa7f71SHong Zhang     if (d) *d = 0;
11262efa7f71SHong Zhang     PetscInfo(A,"Matrix has no entries therefor is missing diagonal");
11272efa7f71SHong Zhang   } else {
1128883fce79SBarry Smith     diag     = a->diag;
11290e8e8aceSBarry Smith     for (i=0; i<a->mbs; i++) {
1130be5855fcSBarry Smith       if (jj[diag[i]] != i) {
11312af78befSBarry Smith         *missing  = PETSC_TRUE;
11322af78befSBarry Smith         if (d) *d = i;
11332efa7f71SHong Zhang         PetscInfo1(A,"Matrix is missing block diagonal number %D",i);
11342efa7f71SHong Zhang       }
1135be5855fcSBarry Smith     }
1136be5855fcSBarry Smith   }
1137be5855fcSBarry Smith   PetscFunctionReturn(0);
1138be5855fcSBarry Smith }
1139be5855fcSBarry Smith 
11404a2ae208SSatish Balay #undef __FUNCT__
11414a2ae208SSatish Balay #define __FUNCT__ "MatMarkDiagonal_SeqBAIJ"
1142dfbe8321SBarry Smith PetscErrorCode MatMarkDiagonal_SeqBAIJ(Mat A)
1143de6a44a3SBarry Smith {
1144de6a44a3SBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
11456849ba73SBarry Smith   PetscErrorCode ierr;
114609f38230SBarry Smith   PetscInt       i,j,m = a->mbs;
1147de6a44a3SBarry Smith 
11483a40ed3dSBarry Smith   PetscFunctionBegin;
114909f38230SBarry Smith   if (!a->diag) {
115009f38230SBarry Smith     ierr = PetscMalloc(m*sizeof(PetscInt),&a->diag);CHKERRQ(ierr);
115109f38230SBarry Smith   }
11527fc0212eSBarry Smith   for (i=0; i<m; i++) {
115309f38230SBarry Smith     a->diag[i] = a->i[i+1];
1154de6a44a3SBarry Smith     for (j=a->i[i]; j<a->i[i+1]; j++) {
1155de6a44a3SBarry Smith       if (a->j[j] == i) {
115609f38230SBarry Smith         a->diag[i] = j;
1157de6a44a3SBarry Smith         break;
1158de6a44a3SBarry Smith       }
1159de6a44a3SBarry Smith     }
1160de6a44a3SBarry Smith   }
11613a40ed3dSBarry Smith   PetscFunctionReturn(0);
1162de6a44a3SBarry Smith }
11632593348eSBarry Smith 
11642593348eSBarry Smith 
1165690b6cddSBarry Smith EXTERN PetscErrorCode MatToSymmetricIJ_SeqAIJ(PetscInt,PetscInt*,PetscInt*,PetscInt,PetscInt,PetscInt**,PetscInt**);
11663b2fbd54SBarry Smith 
11674a2ae208SSatish Balay #undef __FUNCT__
11684a2ae208SSatish Balay #define __FUNCT__ "MatGetRowIJ_SeqBAIJ"
11698f7157efSSatish Balay static PetscErrorCode MatGetRowIJ_SeqBAIJ(Mat A,PetscInt oshift,PetscTruth symmetric,PetscTruth blockcompressed,PetscInt *nn,PetscInt *ia[],PetscInt *ja[],PetscTruth *done)
11703b2fbd54SBarry Smith {
11713b2fbd54SBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
1172dfbe8321SBarry Smith   PetscErrorCode ierr;
1173d0f46423SBarry Smith   PetscInt       i,j,n = a->mbs,nz = a->i[n],bs = A->rmap->bs,nbs = 1,k,l,cnt;
11748f7157efSSatish Balay   PetscInt       *tia, *tja;
11753b2fbd54SBarry Smith 
11763a40ed3dSBarry Smith   PetscFunctionBegin;
11773b2fbd54SBarry Smith   *nn = n;
11783a40ed3dSBarry Smith   if (!ia) PetscFunctionReturn(0);
11793b2fbd54SBarry Smith   if (symmetric) {
11808f7157efSSatish Balay     ierr = MatToSymmetricIJ_SeqAIJ(n,a->i,a->j,0,0,&tia,&tja);CHKERRQ(ierr);
11813b2fbd54SBarry Smith   } else {
11828f7157efSSatish Balay     tia = a->i; tja = a->j;
11833b2fbd54SBarry Smith   }
11843b2fbd54SBarry Smith 
1185ecc77c7aSBarry Smith   if (!blockcompressed && bs > 1) {
1186ecc77c7aSBarry Smith     (*nn) *= bs;
1187ecc77c7aSBarry Smith     nbs    = bs;
11888f7157efSSatish Balay     /* malloc & create the natural set of indices */
1189ecc77c7aSBarry Smith     ierr = PetscMalloc((n+1)*bs*sizeof(PetscInt),ia);CHKERRQ(ierr);
11909985e31cSBarry Smith     if (n) {
1191ecc77c7aSBarry Smith       (*ia)[0] = 0;
1192ecc77c7aSBarry Smith       for (j=1; j<bs; j++) {
1193ecc77c7aSBarry Smith         (*ia)[j] = (tia[1]-tia[0])*bs+(*ia)[j-1];
1194ecc77c7aSBarry Smith       }
11959985e31cSBarry Smith     }
1196ecc77c7aSBarry Smith 
1197ecc77c7aSBarry Smith     for (i=1; i<n; i++) {
1198ecc77c7aSBarry Smith       (*ia)[i*bs] = (tia[i]-tia[i-1])*bs + (*ia)[i*bs-1];
1199ecc77c7aSBarry Smith       for (j=1; j<bs; j++) {
1200ecc77c7aSBarry Smith         (*ia)[i*bs+j] = (tia[i+1]-tia[i])*bs + (*ia)[i*bs+j-1];
12018f7157efSSatish Balay       }
12028f7157efSSatish Balay     }
12039985e31cSBarry Smith     if (n) {
1204ecc77c7aSBarry Smith       (*ia)[n*bs] = (tia[n]-tia[n-1])*bs + (*ia)[n*bs-1];
12059985e31cSBarry Smith     }
1206ecc77c7aSBarry Smith 
12079985e31cSBarry Smith     if (ja) {
12089985e31cSBarry Smith       ierr = PetscMalloc(nz*bs*bs*sizeof(PetscInt),ja);CHKERRQ(ierr);
12099985e31cSBarry Smith       cnt = 0;
12109985e31cSBarry Smith       for (i=0; i<n; i++) {
12119985e31cSBarry Smith         for (j=0; j<bs; j++) {
12129985e31cSBarry Smith           for (k=tia[i]; k<tia[i+1]; k++) {
12139985e31cSBarry Smith             for (l=0; l<bs; l++) {
12149985e31cSBarry Smith               (*ja)[cnt++] = bs*tja[k] + l;
12159985e31cSBarry Smith 	    }
12169985e31cSBarry Smith           }
12179985e31cSBarry Smith         }
12189985e31cSBarry Smith       }
12199985e31cSBarry Smith     }
12209985e31cSBarry Smith 
1221ecc77c7aSBarry Smith     n     *= bs;
1222ecc77c7aSBarry Smith     nz *= bs*bs;
12238f7157efSSatish Balay     if (symmetric) { /* deallocate memory allocated in MatToSymmetricIJ_SeqAIJ() */
12248f7157efSSatish Balay       ierr = PetscFree(tia);CHKERRQ(ierr);
12258f7157efSSatish Balay       ierr = PetscFree(tja);CHKERRQ(ierr);
12268f7157efSSatish Balay     }
1227*f6d58c54SBarry Smith   } else if (oshift == 1) {
1228*f6d58c54SBarry Smith     PetscInt nz = a->i[A->rmap->n/bs];
1229*f6d58c54SBarry Smith     /* malloc space and  add 1 to i and j indices */
1230*f6d58c54SBarry Smith     ierr = PetscMalloc((A->rmap->n/bs+1)*sizeof(PetscInt),ia);CHKERRQ(ierr);
1231*f6d58c54SBarry Smith     for (i=0; i<A->rmap->n/bs+1; i++) (*ia)[i] = a->i[i] + 1;
1232*f6d58c54SBarry Smith     if (ja) {
1233*f6d58c54SBarry Smith       ierr = PetscMalloc(nz*sizeof(PetscInt),ja);CHKERRQ(ierr);
1234*f6d58c54SBarry Smith       for (i=0; i<nz; i++) (*ja)[i] = a->j[i] + 1;
1235*f6d58c54SBarry Smith     }
12368f7157efSSatish Balay   } else {
12378f7157efSSatish Balay     *ia = tia;
1238ecc77c7aSBarry Smith     if (ja) *ja = tja;
12398f7157efSSatish Balay   }
1240*f6d58c54SBarry Smith 
12413a40ed3dSBarry Smith   PetscFunctionReturn(0);
12423b2fbd54SBarry Smith }
12433b2fbd54SBarry Smith 
12444a2ae208SSatish Balay #undef __FUNCT__
12454a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRowIJ_SeqBAIJ"
12468f7157efSSatish Balay static PetscErrorCode MatRestoreRowIJ_SeqBAIJ(Mat A,PetscInt oshift,PetscTruth symmetric,PetscTruth blockcompressed,PetscInt *nn,PetscInt *ia[],PetscInt *ja[],PetscTruth *done)
12473b2fbd54SBarry Smith {
12486849ba73SBarry Smith   PetscErrorCode ierr;
12493b2fbd54SBarry Smith 
12503a40ed3dSBarry Smith   PetscFunctionBegin;
12513a40ed3dSBarry Smith   if (!ia) PetscFunctionReturn(0);
1252d0f46423SBarry Smith   if (!blockcompressed && A->rmap->bs > 1) {
1253ecc77c7aSBarry Smith     ierr = PetscFree(*ia);CHKERRQ(ierr);
12549985e31cSBarry Smith     if (ja) {ierr = PetscFree(*ja);CHKERRQ(ierr);}
1255*f6d58c54SBarry Smith   } else if (symmetric || oshift == 1) {
1256606d414cSSatish Balay     ierr = PetscFree(*ia);CHKERRQ(ierr);
12579985e31cSBarry Smith     if (ja) {ierr = PetscFree(*ja);CHKERRQ(ierr);}
12583b2fbd54SBarry Smith   }
12593a40ed3dSBarry Smith   PetscFunctionReturn(0);
12603b2fbd54SBarry Smith }
12613b2fbd54SBarry Smith 
12624a2ae208SSatish Balay #undef __FUNCT__
12634a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_SeqBAIJ"
1264dfbe8321SBarry Smith PetscErrorCode MatDestroy_SeqBAIJ(Mat A)
12652d61bbb3SSatish Balay {
12662d61bbb3SSatish Balay   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
1267dfbe8321SBarry Smith   PetscErrorCode ierr;
12682d61bbb3SSatish Balay 
1269433994e6SBarry Smith   PetscFunctionBegin;
1270aa482453SBarry Smith #if defined(PETSC_USE_LOG)
1271d0f46423SBarry Smith   PetscLogObjectState((PetscObject)A,"Rows=%D, Cols=%D, NZ=%D",A->rmap->N,A->cmap->n,a->nz);
12722d61bbb3SSatish Balay #endif
1273e6b907acSBarry Smith   ierr = MatSeqXAIJFreeAIJ(A,&a->a,&a->j,&a->i);CHKERRQ(ierr);
1274c38d4ed2SBarry Smith   if (a->row) {
1275c38d4ed2SBarry Smith     ierr = ISDestroy(a->row);CHKERRQ(ierr);
1276c38d4ed2SBarry Smith   }
1277c38d4ed2SBarry Smith   if (a->col) {
1278c38d4ed2SBarry Smith     ierr = ISDestroy(a->col);CHKERRQ(ierr);
1279c38d4ed2SBarry Smith   }
128005b42c5fSBarry Smith   ierr = PetscFree(a->diag);CHKERRQ(ierr);
128105b42c5fSBarry Smith   ierr = PetscFree(a->idiag);CHKERRQ(ierr);
128205b42c5fSBarry Smith   ierr = PetscFree2(a->imax,a->ilen);CHKERRQ(ierr);
128305b42c5fSBarry Smith   ierr = PetscFree(a->solve_work);CHKERRQ(ierr);
128405b42c5fSBarry Smith   ierr = PetscFree(a->mult_work);CHKERRQ(ierr);
1285e51c0b9cSSatish Balay   if (a->icol) {ierr = ISDestroy(a->icol);CHKERRQ(ierr);}
128605b42c5fSBarry Smith   ierr = PetscFree(a->saved_values);CHKERRQ(ierr);
128705b42c5fSBarry Smith   ierr = PetscFree(a->xtoy);CHKERRQ(ierr);
128873e7a558SHong Zhang   if (a->compressedrow.use){ierr = PetscFree(a->compressedrow.i);}
1289c4319e64SHong Zhang 
129070e08fbdSBarry Smith   if (a->sbaijMat) {ierr = MatDestroy(a->sbaijMat);CHKERRQ(ierr);}
1291606d414cSSatish Balay   ierr = PetscFree(a);CHKERRQ(ierr);
1292901853e0SKris Buschelman 
1293dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)A,0);CHKERRQ(ierr);
129443516a2dSKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqBAIJInvertBlockDiagonal_C","",PETSC_NULL);CHKERRQ(ierr);
1295901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)A,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr);
1296901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)A,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr);
1297901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqBAIJSetColumnIndices_C","",PETSC_NULL);CHKERRQ(ierr);
1298901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqbaij_seqaij_C","",PETSC_NULL);CHKERRQ(ierr);
1299901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqbaij_seqsbaij_C","",PETSC_NULL);CHKERRQ(ierr);
1300901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
1301725b52f3SLisandro Dalcin   ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqBAIJSetPreallocationCSR_C","",PETSC_NULL);CHKERRQ(ierr);
13022d61bbb3SSatish Balay   PetscFunctionReturn(0);
13032d61bbb3SSatish Balay }
13042d61bbb3SSatish Balay 
13054a2ae208SSatish Balay #undef __FUNCT__
13064a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_SeqBAIJ"
13074e0d8c25SBarry Smith PetscErrorCode MatSetOption_SeqBAIJ(Mat A,MatOption op,PetscTruth flg)
13082d61bbb3SSatish Balay {
13092d61bbb3SSatish Balay   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
131063ba0a88SBarry Smith   PetscErrorCode ierr;
13112d61bbb3SSatish Balay 
13122d61bbb3SSatish Balay   PetscFunctionBegin;
1313aa275fccSKris Buschelman   switch (op) {
1314aa275fccSKris Buschelman   case MAT_ROW_ORIENTED:
13154e0d8c25SBarry Smith     a->roworiented    = flg;
1316aa275fccSKris Buschelman     break;
1317a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
1318a9817697SBarry Smith     a->keepnonzeropattern = flg;
1319aa275fccSKris Buschelman     break;
1320512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
1321512a5fc5SBarry Smith     a->nonew          = (flg ? 0 : 1);
1322aa275fccSKris Buschelman     break;
1323aa275fccSKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
13244e0d8c25SBarry Smith     a->nonew          = (flg ? -1 : 0);
1325aa275fccSKris Buschelman     break;
1326aa275fccSKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
13274e0d8c25SBarry Smith     a->nonew          = (flg ? -2 : 0);
1328aa275fccSKris Buschelman     break;
132928b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
133028b2fa4aSMatthew Knepley     a->nounused       = (flg ? -1 : 0);
133128b2fa4aSMatthew Knepley     break;
13324e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1333aa275fccSKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
1334aa275fccSKris Buschelman   case MAT_USE_HASH_TABLE:
1335290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
1336aa275fccSKris Buschelman     break;
133777e54ba9SKris Buschelman   case MAT_SYMMETRIC:
133877e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
13399a4540c5SBarry Smith   case MAT_HERMITIAN:
13409a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1341290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
134277e54ba9SKris Buschelman     break;
1343aa275fccSKris Buschelman   default:
1344ad86a440SBarry Smith     SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op);
13452d61bbb3SSatish Balay   }
13462d61bbb3SSatish Balay   PetscFunctionReturn(0);
13472d61bbb3SSatish Balay }
13482d61bbb3SSatish Balay 
13494a2ae208SSatish Balay #undef __FUNCT__
13504a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_SeqBAIJ"
1351c1ac3661SBarry Smith PetscErrorCode MatGetRow_SeqBAIJ(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
13522d61bbb3SSatish Balay {
13532d61bbb3SSatish Balay   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
13546849ba73SBarry Smith   PetscErrorCode ierr;
1355c1ac3661SBarry Smith   PetscInt       itmp,i,j,k,M,*ai,*aj,bs,bn,bp,*idx_i,bs2;
13563f1db9ecSBarry Smith   MatScalar      *aa,*aa_i;
135787828ca2SBarry Smith   PetscScalar    *v_i;
13582d61bbb3SSatish Balay 
13592d61bbb3SSatish Balay   PetscFunctionBegin;
1360d0f46423SBarry Smith   bs  = A->rmap->bs;
13612d61bbb3SSatish Balay   ai  = a->i;
13622d61bbb3SSatish Balay   aj  = a->j;
13632d61bbb3SSatish Balay   aa  = a->a;
13642d61bbb3SSatish Balay   bs2 = a->bs2;
13652d61bbb3SSatish Balay 
1366d0f46423SBarry Smith   if (row < 0 || row >= A->rmap->N) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Row %D out of range", row);
13672d61bbb3SSatish Balay 
13682d61bbb3SSatish Balay   bn  = row/bs;   /* Block number */
13692d61bbb3SSatish Balay   bp  = row % bs; /* Block Position */
13702d61bbb3SSatish Balay   M   = ai[bn+1] - ai[bn];
13712d61bbb3SSatish Balay   *nz = bs*M;
13722d61bbb3SSatish Balay 
13732d61bbb3SSatish Balay   if (v) {
13742d61bbb3SSatish Balay     *v = 0;
13752d61bbb3SSatish Balay     if (*nz) {
137687828ca2SBarry Smith       ierr = PetscMalloc((*nz)*sizeof(PetscScalar),v);CHKERRQ(ierr);
13772d61bbb3SSatish Balay       for (i=0; i<M; i++) { /* for each block in the block row */
13782d61bbb3SSatish Balay         v_i  = *v + i*bs;
13792d61bbb3SSatish Balay         aa_i = aa + bs2*(ai[bn] + i);
13802d61bbb3SSatish Balay         for (j=bp,k=0; j<bs2; j+=bs,k++) {v_i[k] = aa_i[j];}
13812d61bbb3SSatish Balay       }
13822d61bbb3SSatish Balay     }
13832d61bbb3SSatish Balay   }
13842d61bbb3SSatish Balay 
13852d61bbb3SSatish Balay   if (idx) {
13862d61bbb3SSatish Balay     *idx = 0;
13872d61bbb3SSatish Balay     if (*nz) {
1388c1ac3661SBarry Smith       ierr = PetscMalloc((*nz)*sizeof(PetscInt),idx);CHKERRQ(ierr);
13892d61bbb3SSatish Balay       for (i=0; i<M; i++) { /* for each block in the block row */
13902d61bbb3SSatish Balay         idx_i = *idx + i*bs;
13912d61bbb3SSatish Balay         itmp  = bs*aj[ai[bn] + i];
13922d61bbb3SSatish Balay         for (j=0; j<bs; j++) {idx_i[j] = itmp++;}
13932d61bbb3SSatish Balay       }
13942d61bbb3SSatish Balay     }
13952d61bbb3SSatish Balay   }
13962d61bbb3SSatish Balay   PetscFunctionReturn(0);
13972d61bbb3SSatish Balay }
13982d61bbb3SSatish Balay 
13994a2ae208SSatish Balay #undef __FUNCT__
14004a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_SeqBAIJ"
1401c1ac3661SBarry Smith PetscErrorCode MatRestoreRow_SeqBAIJ(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
14022d61bbb3SSatish Balay {
1403dfbe8321SBarry Smith   PetscErrorCode ierr;
1404606d414cSSatish Balay 
14052d61bbb3SSatish Balay   PetscFunctionBegin;
140605b42c5fSBarry Smith   if (idx) {ierr = PetscFree(*idx);CHKERRQ(ierr);}
140705b42c5fSBarry Smith   if (v)   {ierr = PetscFree(*v);CHKERRQ(ierr);}
14082d61bbb3SSatish Balay   PetscFunctionReturn(0);
14092d61bbb3SSatish Balay }
14102d61bbb3SSatish Balay 
14114a2ae208SSatish Balay #undef __FUNCT__
14124a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_SeqBAIJ"
1413fc4dec0aSBarry Smith PetscErrorCode MatTranspose_SeqBAIJ(Mat A,MatReuse reuse,Mat *B)
14142d61bbb3SSatish Balay {
14152d61bbb3SSatish Balay   Mat_SeqBAIJ    *a=(Mat_SeqBAIJ *)A->data;
14162d61bbb3SSatish Balay   Mat            C;
14176849ba73SBarry Smith   PetscErrorCode ierr;
1418d0f46423SBarry Smith   PetscInt       i,j,k,*aj=a->j,*ai=a->i,bs=A->rmap->bs,mbs=a->mbs,nbs=a->nbs,len,*col;
1419c1ac3661SBarry Smith   PetscInt       *rows,*cols,bs2=a->bs2;
1420dd6ea824SBarry Smith   MatScalar      *array;
14212d61bbb3SSatish Balay 
14222d61bbb3SSatish Balay   PetscFunctionBegin;
1423e9695a30SBarry Smith   if (reuse == MAT_REUSE_MATRIX && A == *B && mbs != nbs) SETERRQ(PETSC_ERR_ARG_SIZ,"Square matrix only for in-place");
1424fc4dec0aSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || A == *B) {
1425c1ac3661SBarry Smith     ierr = PetscMalloc((1+nbs)*sizeof(PetscInt),&col);CHKERRQ(ierr);
1426c1ac3661SBarry Smith     ierr = PetscMemzero(col,(1+nbs)*sizeof(PetscInt));CHKERRQ(ierr);
14272d61bbb3SSatish Balay 
14282d61bbb3SSatish Balay     for (i=0; i<ai[mbs]; i++) col[aj[i]] += 1;
14297adad957SLisandro Dalcin     ierr = MatCreate(((PetscObject)A)->comm,&C);CHKERRQ(ierr);
1430d0f46423SBarry Smith     ierr = MatSetSizes(C,A->cmap->n,A->rmap->N,A->cmap->n,A->rmap->N);CHKERRQ(ierr);
14317adad957SLisandro Dalcin     ierr = MatSetType(C,((PetscObject)A)->type_name);CHKERRQ(ierr);
1432ab93d7beSBarry Smith     ierr = MatSeqBAIJSetPreallocation_SeqBAIJ(C,bs,PETSC_NULL,col);CHKERRQ(ierr);
1433606d414cSSatish Balay     ierr = PetscFree(col);CHKERRQ(ierr);
1434fc4dec0aSBarry Smith   } else {
1435fc4dec0aSBarry Smith     C = *B;
1436fc4dec0aSBarry Smith   }
1437fc4dec0aSBarry Smith 
1438fc4dec0aSBarry Smith   array = a->a;
1439c1ac3661SBarry Smith   ierr = PetscMalloc(2*bs*sizeof(PetscInt),&rows);CHKERRQ(ierr);
14402d61bbb3SSatish Balay   cols = rows + bs;
14412d61bbb3SSatish Balay   for (i=0; i<mbs; i++) {
14422d61bbb3SSatish Balay     cols[0] = i*bs;
14432d61bbb3SSatish Balay     for (k=1; k<bs; k++) cols[k] = cols[k-1] + 1;
14442d61bbb3SSatish Balay     len = ai[i+1] - ai[i];
14452d61bbb3SSatish Balay     for (j=0; j<len; j++) {
14462d61bbb3SSatish Balay       rows[0] = (*aj++)*bs;
14472d61bbb3SSatish Balay       for (k=1; k<bs; k++) rows[k] = rows[k-1] + 1;
14482d61bbb3SSatish Balay       ierr = MatSetValues(C,bs,rows,bs,cols,array,INSERT_VALUES);CHKERRQ(ierr);
14492d61bbb3SSatish Balay       array += bs2;
14502d61bbb3SSatish Balay     }
14512d61bbb3SSatish Balay   }
1452606d414cSSatish Balay   ierr = PetscFree(rows);CHKERRQ(ierr);
14532d61bbb3SSatish Balay 
14542d61bbb3SSatish Balay   ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
14552d61bbb3SSatish Balay   ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
14562d61bbb3SSatish Balay 
1457815cbec1SBarry Smith   if (reuse == MAT_INITIAL_MATRIX || *B != A) {
14582d61bbb3SSatish Balay     *B = C;
14592d61bbb3SSatish Balay   } else {
1460273d9f13SBarry Smith     ierr = MatHeaderCopy(A,C);CHKERRQ(ierr);
14612d61bbb3SSatish Balay   }
14622d61bbb3SSatish Balay   PetscFunctionReturn(0);
14632d61bbb3SSatish Balay }
14642d61bbb3SSatish Balay 
14654a2ae208SSatish Balay #undef __FUNCT__
14664a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqBAIJ_Binary"
14676849ba73SBarry Smith static PetscErrorCode MatView_SeqBAIJ_Binary(Mat A,PetscViewer viewer)
14682593348eSBarry Smith {
1469b6490206SBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
14706849ba73SBarry Smith   PetscErrorCode ierr;
1471d0f46423SBarry Smith   PetscInt       i,*col_lens,bs = A->rmap->bs,count,*jj,j,k,l,bs2=a->bs2;
1472b24ad042SBarry Smith   int            fd;
147387828ca2SBarry Smith   PetscScalar    *aa;
1474ce6f0cecSBarry Smith   FILE           *file;
14752593348eSBarry Smith 
14763a40ed3dSBarry Smith   PetscFunctionBegin;
1477b0a32e0cSBarry Smith   ierr        = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
1478d0f46423SBarry Smith   ierr        = PetscMalloc((4+A->rmap->N)*sizeof(PetscInt),&col_lens);CHKERRQ(ierr);
1479552e946dSBarry Smith   col_lens[0] = MAT_FILE_COOKIE;
14803b2fbd54SBarry Smith 
1481d0f46423SBarry Smith   col_lens[1] = A->rmap->N;
1482d0f46423SBarry Smith   col_lens[2] = A->cmap->n;
14837e67e3f9SSatish Balay   col_lens[3] = a->nz*bs2;
14842593348eSBarry Smith 
14852593348eSBarry Smith   /* store lengths of each row and write (including header) to file */
1486b6490206SBarry Smith   count = 0;
1487b6490206SBarry Smith   for (i=0; i<a->mbs; i++) {
1488b6490206SBarry Smith     for (j=0; j<bs; j++) {
1489b6490206SBarry Smith       col_lens[4+count++] = bs*(a->i[i+1] - a->i[i]);
1490b6490206SBarry Smith     }
14912593348eSBarry Smith   }
1492d0f46423SBarry Smith   ierr = PetscBinaryWrite(fd,col_lens,4+A->rmap->N,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1493606d414cSSatish Balay   ierr = PetscFree(col_lens);CHKERRQ(ierr);
14942593348eSBarry Smith 
14952593348eSBarry Smith   /* store column indices (zero start index) */
1496c1ac3661SBarry Smith   ierr  = PetscMalloc((a->nz+1)*bs2*sizeof(PetscInt),&jj);CHKERRQ(ierr);
1497b6490206SBarry Smith   count = 0;
1498b6490206SBarry Smith   for (i=0; i<a->mbs; i++) {
1499b6490206SBarry Smith     for (j=0; j<bs; j++) {
1500b6490206SBarry Smith       for (k=a->i[i]; k<a->i[i+1]; k++) {
1501b6490206SBarry Smith         for (l=0; l<bs; l++) {
1502b6490206SBarry Smith           jj[count++] = bs*a->j[k] + l;
15032593348eSBarry Smith         }
15042593348eSBarry Smith       }
1505b6490206SBarry Smith     }
1506b6490206SBarry Smith   }
15076f69ff64SBarry Smith   ierr = PetscBinaryWrite(fd,jj,bs2*a->nz,PETSC_INT,PETSC_FALSE);CHKERRQ(ierr);
1508606d414cSSatish Balay   ierr = PetscFree(jj);CHKERRQ(ierr);
15092593348eSBarry Smith 
15102593348eSBarry Smith   /* store nonzero values */
151187828ca2SBarry Smith   ierr  = PetscMalloc((a->nz+1)*bs2*sizeof(PetscScalar),&aa);CHKERRQ(ierr);
1512b6490206SBarry Smith   count = 0;
1513b6490206SBarry Smith   for (i=0; i<a->mbs; i++) {
1514b6490206SBarry Smith     for (j=0; j<bs; j++) {
1515b6490206SBarry Smith       for (k=a->i[i]; k<a->i[i+1]; k++) {
1516b6490206SBarry Smith         for (l=0; l<bs; l++) {
15177e67e3f9SSatish Balay           aa[count++] = a->a[bs2*k + l*bs + j];
1518b6490206SBarry Smith         }
1519b6490206SBarry Smith       }
1520b6490206SBarry Smith     }
1521b6490206SBarry Smith   }
15226f69ff64SBarry Smith   ierr = PetscBinaryWrite(fd,aa,bs2*a->nz,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr);
1523606d414cSSatish Balay   ierr = PetscFree(aa);CHKERRQ(ierr);
1524ce6f0cecSBarry Smith 
1525b0a32e0cSBarry Smith   ierr = PetscViewerBinaryGetInfoPointer(viewer,&file);CHKERRQ(ierr);
1526ce6f0cecSBarry Smith   if (file) {
1527d0f46423SBarry Smith     fprintf(file,"-matload_block_size %d\n",(int)A->rmap->bs);
1528ce6f0cecSBarry Smith   }
15293a40ed3dSBarry Smith   PetscFunctionReturn(0);
15302593348eSBarry Smith }
15312593348eSBarry Smith 
15324a2ae208SSatish Balay #undef __FUNCT__
15334a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqBAIJ_ASCII"
15346849ba73SBarry Smith static PetscErrorCode MatView_SeqBAIJ_ASCII(Mat A,PetscViewer viewer)
15352593348eSBarry Smith {
1536b6490206SBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
1537dfbe8321SBarry Smith   PetscErrorCode    ierr;
1538d0f46423SBarry Smith   PetscInt          i,j,bs = A->rmap->bs,k,l,bs2=a->bs2;
1539f3ef73ceSBarry Smith   PetscViewerFormat format;
15402593348eSBarry Smith 
15413a40ed3dSBarry Smith   PetscFunctionBegin;
1542b0a32e0cSBarry Smith   ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
1543456192e2SBarry Smith   if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
154477431f27SBarry Smith     ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
1545fb9695e5SSatish Balay   } else if (format == PETSC_VIEWER_ASCII_MATLAB) {
1546bcd9e38bSBarry Smith     Mat aij;
1547ceb03754SKris Buschelman     ierr = MatConvert(A,MATSEQAIJ,MAT_INITIAL_MATRIX,&aij);CHKERRQ(ierr);
1548bcd9e38bSBarry Smith     ierr = MatView(aij,viewer);CHKERRQ(ierr);
1549bcd9e38bSBarry Smith     ierr = MatDestroy(aij);CHKERRQ(ierr);
155004929863SHong Zhang   } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
155104929863SHong Zhang      PetscFunctionReturn(0);
1552fb9695e5SSatish Balay   } else if (format == PETSC_VIEWER_ASCII_COMMON) {
1553b0a32e0cSBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_NO);CHKERRQ(ierr);
155444cd7ae7SLois Curfman McInnes     for (i=0; i<a->mbs; i++) {
155544cd7ae7SLois Curfman McInnes       for (j=0; j<bs; j++) {
155677431f27SBarry Smith         ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i*bs+j);CHKERRQ(ierr);
155744cd7ae7SLois Curfman McInnes         for (k=a->i[i]; k<a->i[i+1]; k++) {
155844cd7ae7SLois Curfman McInnes           for (l=0; l<bs; l++) {
1559aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
15600e6d2581SBarry Smith             if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) > 0.0 && PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) {
1561a83599f4SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %G + %Gi) ",bs*a->j[k]+l,
15620e6d2581SBarry Smith                       PetscRealPart(a->a[bs2*k + l*bs + j]),PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
15630e6d2581SBarry Smith             } else if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) < 0.0 && PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) {
1564a83599f4SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %G - %Gi) ",bs*a->j[k]+l,
15650e6d2581SBarry Smith                       PetscRealPart(a->a[bs2*k + l*bs + j]),-PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
15660e6d2581SBarry Smith             } else if (PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) {
1567a83599f4SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %G) ",bs*a->j[k]+l,PetscRealPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
15680ef38995SBarry Smith             }
156944cd7ae7SLois Curfman McInnes #else
15700ef38995SBarry Smith             if (a->a[bs2*k + l*bs + j] != 0.0) {
1571a83599f4SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %G) ",bs*a->j[k]+l,a->a[bs2*k + l*bs + j]);CHKERRQ(ierr);
15720ef38995SBarry Smith             }
157344cd7ae7SLois Curfman McInnes #endif
157444cd7ae7SLois Curfman McInnes           }
157544cd7ae7SLois Curfman McInnes         }
1576b0a32e0cSBarry Smith         ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
157744cd7ae7SLois Curfman McInnes       }
157844cd7ae7SLois Curfman McInnes     }
1579b0a32e0cSBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_YES);CHKERRQ(ierr);
15800ef38995SBarry Smith   } else {
1581b0a32e0cSBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_NO);CHKERRQ(ierr);
1582b6490206SBarry Smith     for (i=0; i<a->mbs; i++) {
1583b6490206SBarry Smith       for (j=0; j<bs; j++) {
158477431f27SBarry Smith         ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i*bs+j);CHKERRQ(ierr);
1585b6490206SBarry Smith         for (k=a->i[i]; k<a->i[i+1]; k++) {
1586b6490206SBarry Smith           for (l=0; l<bs; l++) {
1587aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
15880e6d2581SBarry Smith             if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) > 0.0) {
1589a83599f4SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %G + %G i) ",bs*a->j[k]+l,
15900e6d2581SBarry Smith                 PetscRealPart(a->a[bs2*k + l*bs + j]),PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
15910e6d2581SBarry Smith             } else if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) < 0.0) {
1592a83599f4SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %G - %G i) ",bs*a->j[k]+l,
15930e6d2581SBarry Smith                 PetscRealPart(a->a[bs2*k + l*bs + j]),-PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
15940ef38995SBarry Smith             } else {
1595a83599f4SBarry Smith               ierr = PetscViewerASCIIPrintf(viewer," (%D, %G) ",bs*a->j[k]+l,PetscRealPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr);
159688685aaeSLois Curfman McInnes             }
159788685aaeSLois Curfman McInnes #else
1598a83599f4SBarry Smith             ierr = PetscViewerASCIIPrintf(viewer," (%D, %G) ",bs*a->j[k]+l,a->a[bs2*k + l*bs + j]);CHKERRQ(ierr);
159988685aaeSLois Curfman McInnes #endif
16002593348eSBarry Smith           }
16012593348eSBarry Smith         }
1602b0a32e0cSBarry Smith         ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
16032593348eSBarry Smith       }
16042593348eSBarry Smith     }
1605b0a32e0cSBarry Smith     ierr = PetscViewerASCIIUseTabs(viewer,PETSC_YES);CHKERRQ(ierr);
1606b6490206SBarry Smith   }
1607b0a32e0cSBarry Smith   ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
16083a40ed3dSBarry Smith   PetscFunctionReturn(0);
16092593348eSBarry Smith }
16102593348eSBarry Smith 
16114a2ae208SSatish Balay #undef __FUNCT__
16124a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqBAIJ_Draw_Zoom"
16136849ba73SBarry Smith static PetscErrorCode MatView_SeqBAIJ_Draw_Zoom(PetscDraw draw,void *Aa)
16143270192aSSatish Balay {
161577ed5343SBarry Smith   Mat            A = (Mat) Aa;
16163270192aSSatish Balay   Mat_SeqBAIJ    *a=(Mat_SeqBAIJ*)A->data;
16176849ba73SBarry Smith   PetscErrorCode ierr;
1618d0f46423SBarry Smith   PetscInt       row,i,j,k,l,mbs=a->mbs,color,bs=A->rmap->bs,bs2=a->bs2;
16190e6d2581SBarry Smith   PetscReal      xl,yl,xr,yr,x_l,x_r,y_l,y_r;
16203f1db9ecSBarry Smith   MatScalar      *aa;
1621b0a32e0cSBarry Smith   PetscViewer    viewer;
16223270192aSSatish Balay 
16233a40ed3dSBarry Smith   PetscFunctionBegin;
16243270192aSSatish Balay 
1625b65db4caSBarry Smith   /* still need to add support for contour plot of nonzeros; see MatView_SeqAIJ_Draw_Zoom()*/
162677ed5343SBarry Smith   ierr = PetscObjectQuery((PetscObject)A,"Zoomviewer",(PetscObject*)&viewer);CHKERRQ(ierr);
162777ed5343SBarry Smith 
1628b0a32e0cSBarry Smith   ierr = PetscDrawGetCoordinates(draw,&xl,&yl,&xr,&yr);CHKERRQ(ierr);
162977ed5343SBarry Smith 
16303270192aSSatish Balay   /* loop over matrix elements drawing boxes */
1631b0a32e0cSBarry Smith   color = PETSC_DRAW_BLUE;
16323270192aSSatish Balay   for (i=0,row=0; i<mbs; i++,row+=bs) {
16333270192aSSatish Balay     for (j=a->i[i]; j<a->i[i+1]; j++) {
1634d0f46423SBarry Smith       y_l = A->rmap->N - row - 1.0; y_r = y_l + 1.0;
16353270192aSSatish Balay       x_l = a->j[j]*bs; x_r = x_l + 1.0;
16363270192aSSatish Balay       aa = a->a + j*bs2;
16373270192aSSatish Balay       for (k=0; k<bs; k++) {
16383270192aSSatish Balay         for (l=0; l<bs; l++) {
16390e6d2581SBarry Smith           if (PetscRealPart(*aa++) >=  0.) continue;
1640b0a32e0cSBarry Smith           ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr);
16413270192aSSatish Balay         }
16423270192aSSatish Balay       }
16433270192aSSatish Balay     }
16443270192aSSatish Balay   }
1645b0a32e0cSBarry Smith   color = PETSC_DRAW_CYAN;
16463270192aSSatish Balay   for (i=0,row=0; i<mbs; i++,row+=bs) {
16473270192aSSatish Balay     for (j=a->i[i]; j<a->i[i+1]; j++) {
1648d0f46423SBarry Smith       y_l = A->rmap->N - row - 1.0; y_r = y_l + 1.0;
16493270192aSSatish Balay       x_l = a->j[j]*bs; x_r = x_l + 1.0;
16503270192aSSatish Balay       aa = a->a + j*bs2;
16513270192aSSatish Balay       for (k=0; k<bs; k++) {
16523270192aSSatish Balay         for (l=0; l<bs; l++) {
16530e6d2581SBarry Smith           if (PetscRealPart(*aa++) != 0.) continue;
1654b0a32e0cSBarry Smith           ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr);
16553270192aSSatish Balay         }
16563270192aSSatish Balay       }
16573270192aSSatish Balay     }
16583270192aSSatish Balay   }
16593270192aSSatish Balay 
1660b0a32e0cSBarry Smith   color = PETSC_DRAW_RED;
16613270192aSSatish Balay   for (i=0,row=0; i<mbs; i++,row+=bs) {
16623270192aSSatish Balay     for (j=a->i[i]; j<a->i[i+1]; j++) {
1663d0f46423SBarry Smith       y_l = A->rmap->N - row - 1.0; y_r = y_l + 1.0;
16643270192aSSatish Balay       x_l = a->j[j]*bs; x_r = x_l + 1.0;
16653270192aSSatish Balay       aa = a->a + j*bs2;
16663270192aSSatish Balay       for (k=0; k<bs; k++) {
16673270192aSSatish Balay         for (l=0; l<bs; l++) {
16680e6d2581SBarry Smith           if (PetscRealPart(*aa++) <= 0.) continue;
1669b0a32e0cSBarry Smith           ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr);
16703270192aSSatish Balay         }
16713270192aSSatish Balay       }
16723270192aSSatish Balay     }
16733270192aSSatish Balay   }
167477ed5343SBarry Smith   PetscFunctionReturn(0);
167577ed5343SBarry Smith }
16763270192aSSatish Balay 
16774a2ae208SSatish Balay #undef __FUNCT__
16784a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqBAIJ_Draw"
16796849ba73SBarry Smith static PetscErrorCode MatView_SeqBAIJ_Draw(Mat A,PetscViewer viewer)
168077ed5343SBarry Smith {
1681dfbe8321SBarry Smith   PetscErrorCode ierr;
16820e6d2581SBarry Smith   PetscReal      xl,yl,xr,yr,w,h;
1683b0a32e0cSBarry Smith   PetscDraw      draw;
168477ed5343SBarry Smith   PetscTruth     isnull;
16853270192aSSatish Balay 
168677ed5343SBarry Smith   PetscFunctionBegin;
168777ed5343SBarry Smith 
1688b0a32e0cSBarry Smith   ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
1689b0a32e0cSBarry Smith   ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
169077ed5343SBarry Smith 
169177ed5343SBarry Smith   ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",(PetscObject)viewer);CHKERRQ(ierr);
1692d0f46423SBarry Smith   xr  = A->cmap->n; yr = A->rmap->N; h = yr/10.0; w = xr/10.0;
169377ed5343SBarry Smith   xr += w;    yr += h;  xl = -w;     yl = -h;
1694b0a32e0cSBarry Smith   ierr = PetscDrawSetCoordinates(draw,xl,yl,xr,yr);CHKERRQ(ierr);
1695b0a32e0cSBarry Smith   ierr = PetscDrawZoom(draw,MatView_SeqBAIJ_Draw_Zoom,A);CHKERRQ(ierr);
169677ed5343SBarry Smith   ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",PETSC_NULL);CHKERRQ(ierr);
16973a40ed3dSBarry Smith   PetscFunctionReturn(0);
16983270192aSSatish Balay }
16993270192aSSatish Balay 
17004a2ae208SSatish Balay #undef __FUNCT__
17014a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqBAIJ"
1702dfbe8321SBarry Smith PetscErrorCode MatView_SeqBAIJ(Mat A,PetscViewer viewer)
17032593348eSBarry Smith {
1704dfbe8321SBarry Smith   PetscErrorCode ierr;
170532077d6dSBarry Smith   PetscTruth     iascii,isbinary,isdraw;
17062593348eSBarry Smith 
17073a40ed3dSBarry Smith   PetscFunctionBegin;
170832077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
1709fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
1710fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
171132077d6dSBarry Smith   if (iascii){
17123a40ed3dSBarry Smith     ierr = MatView_SeqBAIJ_ASCII(A,viewer);CHKERRQ(ierr);
17130f5bd95cSBarry Smith   } else if (isbinary) {
17143a40ed3dSBarry Smith     ierr = MatView_SeqBAIJ_Binary(A,viewer);CHKERRQ(ierr);
17150f5bd95cSBarry Smith   } else if (isdraw) {
17163a40ed3dSBarry Smith     ierr = MatView_SeqBAIJ_Draw(A,viewer);CHKERRQ(ierr);
17175cd90555SBarry Smith   } else {
1718a5e6ed63SBarry Smith     Mat B;
1719ceb03754SKris Buschelman     ierr = MatConvert(A,MATSEQAIJ,MAT_INITIAL_MATRIX,&B);CHKERRQ(ierr);
1720a5e6ed63SBarry Smith     ierr = MatView(B,viewer);CHKERRQ(ierr);
1721a5e6ed63SBarry Smith     ierr = MatDestroy(B);CHKERRQ(ierr);
17222593348eSBarry Smith   }
17233a40ed3dSBarry Smith   PetscFunctionReturn(0);
17242593348eSBarry Smith }
1725b6490206SBarry Smith 
1726cd0e1443SSatish Balay 
17274a2ae208SSatish Balay #undef __FUNCT__
17284a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_SeqBAIJ"
1729c1ac3661SBarry Smith PetscErrorCode MatGetValues_SeqBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],PetscScalar v[])
1730cd0e1443SSatish Balay {
1731cd0e1443SSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data;
1732c1ac3661SBarry Smith   PetscInt    *rp,k,low,high,t,row,nrow,i,col,l,*aj = a->j;
1733c1ac3661SBarry Smith   PetscInt    *ai = a->i,*ailen = a->ilen;
1734d0f46423SBarry Smith   PetscInt    brow,bcol,ridx,cidx,bs=A->rmap->bs,bs2=a->bs2;
173597e567efSBarry Smith   MatScalar   *ap,*aa = a->a;
1736cd0e1443SSatish Balay 
17373a40ed3dSBarry Smith   PetscFunctionBegin;
17382d61bbb3SSatish Balay   for (k=0; k<m; k++) { /* loop over rows */
1739cd0e1443SSatish Balay     row  = im[k]; brow = row/bs;
174097e567efSBarry Smith     if (row < 0) {v += n; continue;} /* SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); */
1741d0f46423SBarry Smith     if (row >= A->rmap->N) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Row %D too large", row);
17422d61bbb3SSatish Balay     rp   = aj + ai[brow] ; ap = aa + bs2*ai[brow] ;
17432c3acbe9SBarry Smith     nrow = ailen[brow];
17442d61bbb3SSatish Balay     for (l=0; l<n; l++) { /* loop over columns */
174597e567efSBarry Smith       if (in[l] < 0) {v++; continue;} /* SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); */
1746d0f46423SBarry Smith       if (in[l] >= A->cmap->n) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Column %D too large", in[l]);
17472d61bbb3SSatish Balay       col  = in[l] ;
17482d61bbb3SSatish Balay       bcol = col/bs;
17492d61bbb3SSatish Balay       cidx = col%bs;
17502d61bbb3SSatish Balay       ridx = row%bs;
17512d61bbb3SSatish Balay       high = nrow;
17522d61bbb3SSatish Balay       low  = 0; /* assume unsorted */
17532d61bbb3SSatish Balay       while (high-low > 5) {
1754cd0e1443SSatish Balay         t = (low+high)/2;
1755cd0e1443SSatish Balay         if (rp[t] > bcol) high = t;
1756cd0e1443SSatish Balay         else             low  = t;
1757cd0e1443SSatish Balay       }
1758cd0e1443SSatish Balay       for (i=low; i<high; i++) {
1759cd0e1443SSatish Balay         if (rp[i] > bcol) break;
1760cd0e1443SSatish Balay         if (rp[i] == bcol) {
17612d61bbb3SSatish Balay           *v++ = ap[bs2*i+bs*cidx+ridx];
17622d61bbb3SSatish Balay           goto finished;
1763cd0e1443SSatish Balay         }
1764cd0e1443SSatish Balay       }
176597e567efSBarry Smith       *v++ = 0.0;
17662d61bbb3SSatish Balay       finished:;
1767cd0e1443SSatish Balay     }
1768cd0e1443SSatish Balay   }
17693a40ed3dSBarry Smith   PetscFunctionReturn(0);
1770cd0e1443SSatish Balay }
1771cd0e1443SSatish Balay 
177297e5c40aSBarry Smith #define CHUNKSIZE 10
17734a2ae208SSatish Balay #undef __FUNCT__
17744a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_SeqBAIJ"
1775dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is)
177692c4ed94SBarry Smith {
177792c4ed94SBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
1778e2ee6c50SBarry Smith   PetscInt          *rp,k,low,high,t,ii,jj,row,nrow,i,col,l,rmax,N,lastcol = -1;
1779c1ac3661SBarry Smith   PetscInt          *imax=a->imax,*ai=a->i,*ailen=a->ilen;
17806849ba73SBarry Smith   PetscErrorCode    ierr;
1781d0f46423SBarry Smith   PetscInt          *aj=a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs,stepval;
1782273d9f13SBarry Smith   PetscTruth        roworiented=a->roworiented;
1783dd6ea824SBarry Smith   const PetscScalar *value = v;
1784f15d580aSBarry Smith   MatScalar         *ap,*aa = a->a,*bap;
178592c4ed94SBarry Smith 
17863a40ed3dSBarry Smith   PetscFunctionBegin;
17870e324ae4SSatish Balay   if (roworiented) {
17880e324ae4SSatish Balay     stepval = (n-1)*bs;
17890e324ae4SSatish Balay   } else {
17900e324ae4SSatish Balay     stepval = (m-1)*bs;
17910e324ae4SSatish Balay   }
179292c4ed94SBarry Smith   for (k=0; k<m; k++) { /* loop over added rows */
179392c4ed94SBarry Smith     row  = im[k];
17945ef9f2a5SBarry Smith     if (row < 0) continue;
17952515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
179677431f27SBarry Smith     if (row >= a->mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,a->mbs-1);
179792c4ed94SBarry Smith #endif
179892c4ed94SBarry Smith     rp   = aj + ai[row];
179992c4ed94SBarry Smith     ap   = aa + bs2*ai[row];
180092c4ed94SBarry Smith     rmax = imax[row];
180192c4ed94SBarry Smith     nrow = ailen[row];
180292c4ed94SBarry Smith     low  = 0;
1803c71e6ed7SBarry Smith     high = nrow;
180492c4ed94SBarry Smith     for (l=0; l<n; l++) { /* loop over added columns */
18055ef9f2a5SBarry Smith       if (in[l] < 0) continue;
18062515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
180777431f27SBarry Smith       if (in[l] >= a->nbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[l],a->nbs-1);
180892c4ed94SBarry Smith #endif
180992c4ed94SBarry Smith       col = in[l];
181092c4ed94SBarry Smith       if (roworiented) {
18110e324ae4SSatish Balay         value = v + k*(stepval+bs)*bs + l*bs;
18120e324ae4SSatish Balay       } else {
18130e324ae4SSatish Balay         value = v + l*(stepval+bs)*bs + k*bs;
181492c4ed94SBarry Smith       }
18157cd84e04SBarry Smith       if (col <= lastcol) low = 0; else high = nrow;
1816e2ee6c50SBarry Smith       lastcol = col;
181792c4ed94SBarry Smith       while (high-low > 7) {
181892c4ed94SBarry Smith         t = (low+high)/2;
181992c4ed94SBarry Smith         if (rp[t] > col) high = t;
182092c4ed94SBarry Smith         else             low  = t;
182192c4ed94SBarry Smith       }
182292c4ed94SBarry Smith       for (i=low; i<high; i++) {
182392c4ed94SBarry Smith         if (rp[i] > col) break;
182492c4ed94SBarry Smith         if (rp[i] == col) {
18258a84c255SSatish Balay           bap  = ap +  bs2*i;
18260e324ae4SSatish Balay           if (roworiented) {
18278a84c255SSatish Balay             if (is == ADD_VALUES) {
1828dd9472c6SBarry Smith               for (ii=0; ii<bs; ii++,value+=stepval) {
1829dd9472c6SBarry Smith                 for (jj=ii; jj<bs2; jj+=bs) {
18308a84c255SSatish Balay                   bap[jj] += *value++;
1831dd9472c6SBarry Smith                 }
1832dd9472c6SBarry Smith               }
18330e324ae4SSatish Balay             } else {
1834dd9472c6SBarry Smith               for (ii=0; ii<bs; ii++,value+=stepval) {
1835dd9472c6SBarry Smith                 for (jj=ii; jj<bs2; jj+=bs) {
18360e324ae4SSatish Balay                   bap[jj] = *value++;
18378a84c255SSatish Balay                 }
1838dd9472c6SBarry Smith               }
1839dd9472c6SBarry Smith             }
18400e324ae4SSatish Balay           } else {
18410e324ae4SSatish Balay             if (is == ADD_VALUES) {
1842dd9472c6SBarry Smith               for (ii=0; ii<bs; ii++,value+=stepval) {
1843dd9472c6SBarry Smith                 for (jj=0; jj<bs; jj++) {
18440e324ae4SSatish Balay                   *bap++ += *value++;
1845dd9472c6SBarry Smith                 }
1846dd9472c6SBarry Smith               }
18470e324ae4SSatish Balay             } else {
1848dd9472c6SBarry Smith               for (ii=0; ii<bs; ii++,value+=stepval) {
1849dd9472c6SBarry Smith                 for (jj=0; jj<bs; jj++) {
18500e324ae4SSatish Balay                   *bap++  = *value++;
18510e324ae4SSatish Balay                 }
18528a84c255SSatish Balay               }
1853dd9472c6SBarry Smith             }
1854dd9472c6SBarry Smith           }
1855f1241b54SBarry Smith           goto noinsert2;
185692c4ed94SBarry Smith         }
185792c4ed94SBarry Smith       }
185889280ab3SLois Curfman McInnes       if (nonew == 1) goto noinsert2;
1859085a36d4SBarry Smith       if (nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col);
1860421e10b8SBarry Smith       MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
1861c03d1d03SSatish Balay       N = nrow++ - 1; high++;
186292c4ed94SBarry Smith       /* shift up all the later entries in this row */
186392c4ed94SBarry Smith       for (ii=N; ii>=i; ii--) {
186492c4ed94SBarry Smith         rp[ii+1] = rp[ii];
1865549d3d68SSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr);
186692c4ed94SBarry Smith       }
1867549d3d68SSatish Balay       if (N >= i) {
1868549d3d68SSatish Balay         ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr);
1869549d3d68SSatish Balay       }
187092c4ed94SBarry Smith       rp[i] = col;
18718a84c255SSatish Balay       bap   = ap +  bs2*i;
18720e324ae4SSatish Balay       if (roworiented) {
1873dd9472c6SBarry Smith         for (ii=0; ii<bs; ii++,value+=stepval) {
1874dd9472c6SBarry Smith           for (jj=ii; jj<bs2; jj+=bs) {
18750e324ae4SSatish Balay             bap[jj] = *value++;
1876dd9472c6SBarry Smith           }
1877dd9472c6SBarry Smith         }
18780e324ae4SSatish Balay       } else {
1879dd9472c6SBarry Smith         for (ii=0; ii<bs; ii++,value+=stepval) {
1880dd9472c6SBarry Smith           for (jj=0; jj<bs; jj++) {
18810e324ae4SSatish Balay             *bap++  = *value++;
18820e324ae4SSatish Balay           }
1883dd9472c6SBarry Smith         }
1884dd9472c6SBarry Smith       }
1885f1241b54SBarry Smith       noinsert2:;
188692c4ed94SBarry Smith       low = i;
188792c4ed94SBarry Smith     }
188892c4ed94SBarry Smith     ailen[row] = nrow;
188992c4ed94SBarry Smith   }
18903a40ed3dSBarry Smith   PetscFunctionReturn(0);
189192c4ed94SBarry Smith }
189226e093fcSHong Zhang 
18934a2ae208SSatish Balay #undef __FUNCT__
18944a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_SeqBAIJ"
1895dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_SeqBAIJ(Mat A,MatAssemblyType mode)
1896584200bdSSatish Balay {
1897584200bdSSatish Balay   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
1898c1ac3661SBarry Smith   PetscInt       fshift = 0,i,j,*ai = a->i,*aj = a->j,*imax = a->imax;
1899d0f46423SBarry Smith   PetscInt       m = A->rmap->N,*ip,N,*ailen = a->ilen;
19006849ba73SBarry Smith   PetscErrorCode ierr;
1901c1ac3661SBarry Smith   PetscInt       mbs = a->mbs,bs2 = a->bs2,rmax = 0;
19023f1db9ecSBarry Smith   MatScalar      *aa = a->a,*ap;
19033447b6efSHong Zhang   PetscReal      ratio=0.6;
1904584200bdSSatish Balay 
19053a40ed3dSBarry Smith   PetscFunctionBegin;
19063a40ed3dSBarry Smith   if (mode == MAT_FLUSH_ASSEMBLY) PetscFunctionReturn(0);
1907584200bdSSatish Balay 
190843ee02c3SBarry Smith   if (m) rmax = ailen[0];
1909584200bdSSatish Balay   for (i=1; i<mbs; i++) {
1910584200bdSSatish Balay     /* move each row back by the amount of empty slots (fshift) before it*/
1911584200bdSSatish Balay     fshift += imax[i-1] - ailen[i-1];
1912d402145bSBarry Smith     rmax   = PetscMax(rmax,ailen[i]);
1913584200bdSSatish Balay     if (fshift) {
1914a7c10996SSatish Balay       ip = aj + ai[i]; ap = aa + bs2*ai[i];
1915584200bdSSatish Balay       N = ailen[i];
1916584200bdSSatish Balay       for (j=0; j<N; j++) {
1917584200bdSSatish Balay         ip[j-fshift] = ip[j];
1918549d3d68SSatish Balay         ierr = PetscMemcpy(ap+(j-fshift)*bs2,ap+j*bs2,bs2*sizeof(MatScalar));CHKERRQ(ierr);
1919584200bdSSatish Balay       }
1920584200bdSSatish Balay     }
1921584200bdSSatish Balay     ai[i] = ai[i-1] + ailen[i-1];
1922584200bdSSatish Balay   }
1923584200bdSSatish Balay   if (mbs) {
1924584200bdSSatish Balay     fshift += imax[mbs-1] - ailen[mbs-1];
1925584200bdSSatish Balay     ai[mbs] = ai[mbs-1] + ailen[mbs-1];
1926584200bdSSatish Balay   }
1927584200bdSSatish Balay   /* reset ilen and imax for each row */
1928584200bdSSatish Balay   for (i=0; i<mbs; i++) {
1929584200bdSSatish Balay     ailen[i] = imax[i] = ai[i+1] - ai[i];
1930584200bdSSatish Balay   }
1931a7c10996SSatish Balay   a->nz = ai[mbs];
1932584200bdSSatish Balay 
1933584200bdSSatish Balay   /* diagonals may have moved, so kill the diagonal pointers */
1934b01c7715SBarry Smith   a->idiagvalid = PETSC_FALSE;
1935584200bdSSatish Balay   if (fshift && a->diag) {
1936606d414cSSatish Balay     ierr = PetscFree(a->diag);CHKERRQ(ierr);
193752e6d16bSBarry Smith     ierr = PetscLogObjectMemory(A,-(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr);
1938584200bdSSatish Balay     a->diag = 0;
1939584200bdSSatish Balay   }
194028b2fa4aSMatthew Knepley   if (fshift && a->nounused == -1) {
194128b2fa4aSMatthew Knepley     SETERRQ4(PETSC_ERR_PLIB, "Unused space detected in matrix: %D X %D block size %D, %D unneeded", m, A->cmap->n, A->rmap->bs, fshift*bs2);
194228b2fa4aSMatthew Knepley   }
1943d0f46423SBarry Smith   ierr = PetscInfo5(A,"Matrix size: %D X %D, block size %D; storage space: %D unneeded, %D used\n",m,A->cmap->n,A->rmap->bs,fshift*bs2,a->nz*bs2);CHKERRQ(ierr);
1944ae15b995SBarry Smith   ierr = PetscInfo1(A,"Number of mallocs during MatSetValues is %D\n",a->reallocs);CHKERRQ(ierr);
1945ae15b995SBarry Smith   ierr = PetscInfo1(A,"Most nonzeros blocks in any row is %D\n",rmax);CHKERRQ(ierr);
1946e2f3b5e9SSatish Balay   a->reallocs          = 0;
19470e6d2581SBarry Smith   A->info.nz_unneeded  = (PetscReal)fshift*bs2;
1948cf4441caSHong Zhang 
1949cb5d8e9eSHong Zhang   /* check for zero rows. If found a large number of zero rows, use CompressedRow functions */
19502f53aa61SHong Zhang   if (a->compressedrow.use){
1951317fbc4cSHong Zhang     ierr = Mat_CheckCompressedRow(A,&a->compressedrow,a->i,mbs,ratio);CHKERRQ(ierr);
195273e7a558SHong Zhang   }
195388e51ccdSHong Zhang 
195488e51ccdSHong Zhang   A->same_nonzero = PETSC_TRUE;
19553a40ed3dSBarry Smith   PetscFunctionReturn(0);
1956584200bdSSatish Balay }
1957584200bdSSatish Balay 
1958bea157c4SSatish Balay /*
1959bea157c4SSatish Balay    This function returns an array of flags which indicate the locations of contiguous
1960bea157c4SSatish Balay    blocks that should be zeroed. for eg: if bs = 3  and is = [0,1,2,3,5,6,7,8,9]
1961bea157c4SSatish Balay    then the resulting sizes = [3,1,1,3,1] correspondig to sets [(0,1,2),(3),(5),(6,7,8),(9)]
1962bea157c4SSatish Balay    Assume: sizes should be long enough to hold all the values.
1963bea157c4SSatish Balay */
19644a2ae208SSatish Balay #undef __FUNCT__
19654a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_SeqBAIJ_Check_Blocks"
1966c1ac3661SBarry Smith static PetscErrorCode MatZeroRows_SeqBAIJ_Check_Blocks(PetscInt idx[],PetscInt n,PetscInt bs,PetscInt sizes[], PetscInt *bs_max)
1967d9b7c43dSSatish Balay {
1968c1ac3661SBarry Smith   PetscInt   i,j,k,row;
1969bea157c4SSatish Balay   PetscTruth flg;
19703a40ed3dSBarry Smith 
1971433994e6SBarry Smith   PetscFunctionBegin;
1972bea157c4SSatish Balay   for (i=0,j=0; i<n; j++) {
1973bea157c4SSatish Balay     row = idx[i];
1974bea157c4SSatish Balay     if (row%bs!=0) { /* Not the begining of a block */
1975bea157c4SSatish Balay       sizes[j] = 1;
1976bea157c4SSatish Balay       i++;
1977e4fda26cSSatish Balay     } else if (i+bs > n) { /* complete block doesn't exist (at idx end) */
1978bea157c4SSatish Balay       sizes[j] = 1;         /* Also makes sure atleast 'bs' values exist for next else */
1979bea157c4SSatish Balay       i++;
1980bea157c4SSatish Balay     } else { /* Begining of the block, so check if the complete block exists */
1981bea157c4SSatish Balay       flg = PETSC_TRUE;
1982bea157c4SSatish Balay       for (k=1; k<bs; k++) {
1983bea157c4SSatish Balay         if (row+k != idx[i+k]) { /* break in the block */
1984bea157c4SSatish Balay           flg = PETSC_FALSE;
1985bea157c4SSatish Balay           break;
1986d9b7c43dSSatish Balay         }
1987bea157c4SSatish Balay       }
1988abc0a331SBarry Smith       if (flg) { /* No break in the bs */
1989bea157c4SSatish Balay         sizes[j] = bs;
1990bea157c4SSatish Balay         i+= bs;
1991bea157c4SSatish Balay       } else {
1992bea157c4SSatish Balay         sizes[j] = 1;
1993bea157c4SSatish Balay         i++;
1994bea157c4SSatish Balay       }
1995bea157c4SSatish Balay     }
1996bea157c4SSatish Balay   }
1997bea157c4SSatish Balay   *bs_max = j;
19983a40ed3dSBarry Smith   PetscFunctionReturn(0);
1999d9b7c43dSSatish Balay }
2000d9b7c43dSSatish Balay 
20014a2ae208SSatish Balay #undef __FUNCT__
20024a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_SeqBAIJ"
2003f4df32b1SMatthew Knepley PetscErrorCode MatZeroRows_SeqBAIJ(Mat A,PetscInt is_n,const PetscInt is_idx[],PetscScalar diag)
2004d9b7c43dSSatish Balay {
2005d9b7c43dSSatish Balay   Mat_SeqBAIJ    *baij=(Mat_SeqBAIJ*)A->data;
2006dfbe8321SBarry Smith   PetscErrorCode ierr;
2007f4df32b1SMatthew Knepley   PetscInt       i,j,k,count,*rows;
2008d0f46423SBarry Smith   PetscInt       bs=A->rmap->bs,bs2=baij->bs2,*sizes,row,bs_max;
200987828ca2SBarry Smith   PetscScalar    zero = 0.0;
20103f1db9ecSBarry Smith   MatScalar      *aa;
2011d9b7c43dSSatish Balay 
20123a40ed3dSBarry Smith   PetscFunctionBegin;
2013d9b7c43dSSatish Balay   /* Make a copy of the IS and  sort it */
2014bea157c4SSatish Balay   /* allocate memory for rows,sizes */
2015c1ac3661SBarry Smith   ierr  = PetscMalloc((3*is_n+1)*sizeof(PetscInt),&rows);CHKERRQ(ierr);
2016bea157c4SSatish Balay   sizes = rows + is_n;
2017bea157c4SSatish Balay 
2018563b5814SBarry Smith   /* copy IS values to rows, and sort them */
2019bea157c4SSatish Balay   for (i=0; i<is_n; i++) { rows[i] = is_idx[i]; }
2020bea157c4SSatish Balay   ierr = PetscSortInt(is_n,rows);CHKERRQ(ierr);
2021a9817697SBarry Smith   if (baij->keepnonzeropattern) {
2022dffd3267SBarry Smith     for (i=0; i<is_n; i++) { sizes[i] = 1; }
2023dffd3267SBarry Smith     bs_max = is_n;
202488e51ccdSHong Zhang     A->same_nonzero = PETSC_TRUE;
2025dffd3267SBarry Smith   } else {
2026bea157c4SSatish Balay     ierr = MatZeroRows_SeqBAIJ_Check_Blocks(rows,is_n,bs,sizes,&bs_max);CHKERRQ(ierr);
202788e51ccdSHong Zhang     A->same_nonzero = PETSC_FALSE;
2028dffd3267SBarry Smith   }
2029bea157c4SSatish Balay 
2030bea157c4SSatish Balay   for (i=0,j=0; i<bs_max; j+=sizes[i],i++) {
2031bea157c4SSatish Balay     row   = rows[j];
2032d0f46423SBarry Smith     if (row < 0 || row > A->rmap->N) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"row %D out of range",row);
2033bea157c4SSatish Balay     count = (baij->i[row/bs +1] - baij->i[row/bs])*bs;
2034b31fbe3bSSatish Balay     aa    = ((MatScalar*)(baij->a)) + baij->i[row/bs]*bs2 + (row%bs);
2035a9817697SBarry Smith     if (sizes[i] == bs && !baij->keepnonzeropattern) {
2036f4df32b1SMatthew Knepley       if (diag != 0.0) {
2037bea157c4SSatish Balay         if (baij->ilen[row/bs] > 0) {
2038bea157c4SSatish Balay           baij->ilen[row/bs]       = 1;
2039bea157c4SSatish Balay           baij->j[baij->i[row/bs]] = row/bs;
2040bea157c4SSatish Balay           ierr = PetscMemzero(aa,count*bs*sizeof(MatScalar));CHKERRQ(ierr);
2041a07cd24cSSatish Balay         }
2042563b5814SBarry Smith         /* Now insert all the diagonal values for this bs */
2043bea157c4SSatish Balay         for (k=0; k<bs; k++) {
2044f4df32b1SMatthew Knepley           ierr = (*A->ops->setvalues)(A,1,rows+j+k,1,rows+j+k,&diag,INSERT_VALUES);CHKERRQ(ierr);
2045bea157c4SSatish Balay         }
2046f4df32b1SMatthew Knepley       } else { /* (diag == 0.0) */
2047bea157c4SSatish Balay         baij->ilen[row/bs] = 0;
2048f4df32b1SMatthew Knepley       } /* end (diag == 0.0) */
2049bea157c4SSatish Balay     } else { /* (sizes[i] != bs) */
2050aa482453SBarry Smith #if defined (PETSC_USE_DEBUG)
2051634064b4SBarry Smith       if (sizes[i] != 1) SETERRQ(PETSC_ERR_PLIB,"Internal Error. Value should be 1");
2052bea157c4SSatish Balay #endif
2053bea157c4SSatish Balay       for (k=0; k<count; k++) {
2054d9b7c43dSSatish Balay         aa[0] =  zero;
2055d9b7c43dSSatish Balay         aa    += bs;
2056d9b7c43dSSatish Balay       }
2057f4df32b1SMatthew Knepley       if (diag != 0.0) {
2058f4df32b1SMatthew Knepley         ierr = (*A->ops->setvalues)(A,1,rows+j,1,rows+j,&diag,INSERT_VALUES);CHKERRQ(ierr);
2059d9b7c43dSSatish Balay       }
2060d9b7c43dSSatish Balay     }
2061bea157c4SSatish Balay   }
2062bea157c4SSatish Balay 
2063606d414cSSatish Balay   ierr = PetscFree(rows);CHKERRQ(ierr);
20649a8dea36SBarry Smith   ierr = MatAssemblyEnd_SeqBAIJ(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
20653a40ed3dSBarry Smith   PetscFunctionReturn(0);
2066d9b7c43dSSatish Balay }
20671c351548SSatish Balay 
20684a2ae208SSatish Balay #undef __FUNCT__
20694a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_SeqBAIJ"
2070c1ac3661SBarry Smith PetscErrorCode MatSetValues_SeqBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is)
20712d61bbb3SSatish Balay {
20722d61bbb3SSatish Balay   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
2073e2ee6c50SBarry Smith   PetscInt       *rp,k,low,high,t,ii,row,nrow,i,col,l,rmax,N,lastcol = -1;
2074c1ac3661SBarry Smith   PetscInt       *imax=a->imax,*ai=a->i,*ailen=a->ilen;
2075d0f46423SBarry Smith   PetscInt       *aj=a->j,nonew=a->nonew,bs=A->rmap->bs,brow,bcol;
20766849ba73SBarry Smith   PetscErrorCode ierr;
2077c1ac3661SBarry Smith   PetscInt       ridx,cidx,bs2=a->bs2;
2078273d9f13SBarry Smith   PetscTruth     roworiented=a->roworiented;
20793f1db9ecSBarry Smith   MatScalar      *ap,value,*aa=a->a,*bap;
20802d61bbb3SSatish Balay 
20812d61bbb3SSatish Balay   PetscFunctionBegin;
20822d61bbb3SSatish Balay   for (k=0; k<m; k++) { /* loop over added rows */
2083085a36d4SBarry Smith     row  = im[k];
2084085a36d4SBarry Smith     brow = row/bs;
20855ef9f2a5SBarry Smith     if (row < 0) continue;
20862515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
2087d0f46423SBarry Smith     if (row >= A->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,A->rmap->N-1);
20882d61bbb3SSatish Balay #endif
20892d61bbb3SSatish Balay     rp   = aj + ai[brow];
20902d61bbb3SSatish Balay     ap   = aa + bs2*ai[brow];
20912d61bbb3SSatish Balay     rmax = imax[brow];
20922d61bbb3SSatish Balay     nrow = ailen[brow];
20932d61bbb3SSatish Balay     low  = 0;
2094c71e6ed7SBarry Smith     high = nrow;
20952d61bbb3SSatish Balay     for (l=0; l<n; l++) { /* loop over added columns */
20965ef9f2a5SBarry Smith       if (in[l] < 0) continue;
20972515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
2098d0f46423SBarry Smith       if (in[l] >= A->cmap->n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[l],A->cmap->n-1);
20992d61bbb3SSatish Balay #endif
21002d61bbb3SSatish Balay       col = in[l]; bcol = col/bs;
21012d61bbb3SSatish Balay       ridx = row % bs; cidx = col % bs;
21022d61bbb3SSatish Balay       if (roworiented) {
21035ef9f2a5SBarry Smith         value = v[l + k*n];
21042d61bbb3SSatish Balay       } else {
21052d61bbb3SSatish Balay         value = v[k + l*m];
21062d61bbb3SSatish Balay       }
21077cd84e04SBarry Smith       if (col <= lastcol) low = 0; else high = nrow;
2108e2ee6c50SBarry Smith       lastcol = col;
21092d61bbb3SSatish Balay       while (high-low > 7) {
21102d61bbb3SSatish Balay         t = (low+high)/2;
21112d61bbb3SSatish Balay         if (rp[t] > bcol) high = t;
21122d61bbb3SSatish Balay         else              low  = t;
21132d61bbb3SSatish Balay       }
21142d61bbb3SSatish Balay       for (i=low; i<high; i++) {
21152d61bbb3SSatish Balay         if (rp[i] > bcol) break;
21162d61bbb3SSatish Balay         if (rp[i] == bcol) {
21172d61bbb3SSatish Balay           bap  = ap +  bs2*i + bs*cidx + ridx;
21182d61bbb3SSatish Balay           if (is == ADD_VALUES) *bap += value;
21192d61bbb3SSatish Balay           else                  *bap  = value;
21202d61bbb3SSatish Balay           goto noinsert1;
21212d61bbb3SSatish Balay         }
21222d61bbb3SSatish Balay       }
21232d61bbb3SSatish Balay       if (nonew == 1) goto noinsert1;
2124085a36d4SBarry Smith       if (nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col);
2125421e10b8SBarry Smith       MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
2126c03d1d03SSatish Balay       N = nrow++ - 1; high++;
21272d61bbb3SSatish Balay       /* shift up all the later entries in this row */
21282d61bbb3SSatish Balay       for (ii=N; ii>=i; ii--) {
21292d61bbb3SSatish Balay         rp[ii+1] = rp[ii];
2130549d3d68SSatish Balay         ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr);
21312d61bbb3SSatish Balay       }
2132549d3d68SSatish Balay       if (N>=i) {
2133549d3d68SSatish Balay         ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr);
2134549d3d68SSatish Balay       }
21352d61bbb3SSatish Balay       rp[i]                      = bcol;
21362d61bbb3SSatish Balay       ap[bs2*i + bs*cidx + ridx] = value;
2137085a36d4SBarry Smith       a->nz++;
21382d61bbb3SSatish Balay       noinsert1:;
21392d61bbb3SSatish Balay       low = i;
21402d61bbb3SSatish Balay     }
21412d61bbb3SSatish Balay     ailen[brow] = nrow;
21422d61bbb3SSatish Balay   }
214388e51ccdSHong Zhang   A->same_nonzero = PETSC_FALSE;
21442d61bbb3SSatish Balay   PetscFunctionReturn(0);
21452d61bbb3SSatish Balay }
21462d61bbb3SSatish Balay 
2147db4efbfdSBarry Smith EXTERN PetscErrorCode MatSeqBAIJSetNumericFactorization(Mat,PetscTruth);
21482d61bbb3SSatish Balay 
21494a2ae208SSatish Balay #undef __FUNCT__
21504a2ae208SSatish Balay #define __FUNCT__ "MatILUFactor_SeqBAIJ"
21510481f469SBarry Smith PetscErrorCode MatILUFactor_SeqBAIJ(Mat inA,IS row,IS col,const MatFactorInfo *info)
21522d61bbb3SSatish Balay {
21532d61bbb3SSatish Balay   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)inA->data;
21542d61bbb3SSatish Balay   Mat            outA;
2155dfbe8321SBarry Smith   PetscErrorCode ierr;
2156667159a5SBarry Smith   PetscTruth     row_identity,col_identity;
21572d61bbb3SSatish Balay 
21582d61bbb3SSatish Balay   PetscFunctionBegin;
2159d3d32019SBarry Smith   if (info->levels != 0) SETERRQ(PETSC_ERR_SUP,"Only levels = 0 supported for in-place ILU");
2160667159a5SBarry Smith   ierr = ISIdentity(row,&row_identity);CHKERRQ(ierr);
2161667159a5SBarry Smith   ierr = ISIdentity(col,&col_identity);CHKERRQ(ierr);
2162667159a5SBarry Smith   if (!row_identity || !col_identity) {
2163634064b4SBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONG,"Row and column permutations must be identity for in-place ILU");
2164667159a5SBarry Smith   }
21652d61bbb3SSatish Balay 
21662d61bbb3SSatish Balay   outA          = inA;
21675c9eb25fSBarry Smith   inA->factor   = MAT_FACTOR_LU;
21682d61bbb3SSatish Balay 
2169c4992f7dSBarry Smith   ierr = MatMarkDiagonal_SeqBAIJ(inA);CHKERRQ(ierr);
2170cf242676SKris Buschelman 
2171c38d4ed2SBarry Smith   ierr = PetscObjectReference((PetscObject)row);CHKERRQ(ierr);
2172c3122656SLisandro Dalcin   if (a->row) { ierr = ISDestroy(a->row);CHKERRQ(ierr); }
2173c3122656SLisandro Dalcin   a->row = row;
2174c38d4ed2SBarry Smith   ierr = PetscObjectReference((PetscObject)col);CHKERRQ(ierr);
2175c3122656SLisandro Dalcin   if (a->col) { ierr = ISDestroy(a->col);CHKERRQ(ierr); }
2176c3122656SLisandro Dalcin   a->col = col;
2177c38d4ed2SBarry Smith 
2178c38d4ed2SBarry Smith   /* Create the invert permutation so that it can be used in MatLUFactorNumeric() */
21794c49b128SBarry Smith   ierr = ISInvertPermutation(col,PETSC_DECIDE,&a->icol);CHKERRQ(ierr);
218052e6d16bSBarry Smith   ierr = PetscLogObjectParent(inA,a->icol);CHKERRQ(ierr);
2181c38d4ed2SBarry Smith 
218258e7c4b3SSatish Balay   ierr = MatSeqBAIJSetNumericFactorization(inA,(PetscTruth)(row_identity && col_identity));CHKERRQ(ierr);
2183c38d4ed2SBarry Smith   if (!a->solve_work) {
2184d0f46423SBarry Smith     ierr = PetscMalloc((inA->rmap->N+inA->rmap->bs)*sizeof(PetscScalar),&a->solve_work);CHKERRQ(ierr);
2185d0f46423SBarry Smith     ierr = PetscLogObjectMemory(inA,(inA->rmap->N+inA->rmap->bs)*sizeof(PetscScalar));CHKERRQ(ierr);
2186c38d4ed2SBarry Smith   }
2187719d5645SBarry Smith   ierr = MatLUFactorNumeric(outA,inA,info);CHKERRQ(ierr);
2188667159a5SBarry Smith 
21892d61bbb3SSatish Balay   PetscFunctionReturn(0);
21902d61bbb3SSatish Balay }
2191d9b7c43dSSatish Balay 
2192fb2e594dSBarry Smith EXTERN_C_BEGIN
21934a2ae208SSatish Balay #undef __FUNCT__
21944a2ae208SSatish Balay #define __FUNCT__ "MatSeqBAIJSetColumnIndices_SeqBAIJ"
2195be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJSetColumnIndices_SeqBAIJ(Mat mat,PetscInt *indices)
219627a8da17SBarry Smith {
219727a8da17SBarry Smith   Mat_SeqBAIJ *baij = (Mat_SeqBAIJ *)mat->data;
2198bdb1c0e1SJed Brown   PetscInt    i,nz,mbs;
219927a8da17SBarry Smith 
220027a8da17SBarry Smith   PetscFunctionBegin;
220114db4f74SSatish Balay   nz  = baij->maxnz/baij->bs2;
2202bdb1c0e1SJed Brown   mbs = baij->mbs;
220327a8da17SBarry Smith   for (i=0; i<nz; i++) {
220427a8da17SBarry Smith     baij->j[i] = indices[i];
220527a8da17SBarry Smith   }
220627a8da17SBarry Smith   baij->nz = nz;
2207bdb1c0e1SJed Brown   for (i=0; i<mbs; i++) {
220827a8da17SBarry Smith     baij->ilen[i] = baij->imax[i];
220927a8da17SBarry Smith   }
221027a8da17SBarry Smith   PetscFunctionReturn(0);
221127a8da17SBarry Smith }
2212fb2e594dSBarry Smith EXTERN_C_END
221327a8da17SBarry Smith 
22144a2ae208SSatish Balay #undef __FUNCT__
22154a2ae208SSatish Balay #define __FUNCT__ "MatSeqBAIJSetColumnIndices"
221627a8da17SBarry Smith /*@
221727a8da17SBarry Smith     MatSeqBAIJSetColumnIndices - Set the column indices for all the rows
221827a8da17SBarry Smith        in the matrix.
221927a8da17SBarry Smith 
222027a8da17SBarry Smith   Input Parameters:
222127a8da17SBarry Smith +  mat - the SeqBAIJ matrix
222227a8da17SBarry Smith -  indices - the column indices
222327a8da17SBarry Smith 
222415091d37SBarry Smith   Level: advanced
222515091d37SBarry Smith 
222627a8da17SBarry Smith   Notes:
222727a8da17SBarry Smith     This can be called if you have precomputed the nonzero structure of the
222827a8da17SBarry Smith   matrix and want to provide it to the matrix object to improve the performance
222927a8da17SBarry Smith   of the MatSetValues() operation.
223027a8da17SBarry Smith 
223127a8da17SBarry Smith     You MUST have set the correct numbers of nonzeros per row in the call to
2232d1be2dadSMatthew Knepley   MatCreateSeqBAIJ(), and the columns indices MUST be sorted.
223327a8da17SBarry Smith 
223427a8da17SBarry Smith     MUST be called before any calls to MatSetValues();
223527a8da17SBarry Smith 
223627a8da17SBarry Smith @*/
2237be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJSetColumnIndices(Mat mat,PetscInt *indices)
223827a8da17SBarry Smith {
2239c1ac3661SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt *);
224027a8da17SBarry Smith 
224127a8da17SBarry Smith   PetscFunctionBegin;
22424482741eSBarry Smith   PetscValidHeaderSpecific(mat,MAT_COOKIE,1);
22434482741eSBarry Smith   PetscValidPointer(indices,2);
2244c134de8dSSatish Balay   ierr = PetscObjectQueryFunction((PetscObject)mat,"MatSeqBAIJSetColumnIndices_C",(void (**)(void))&f);CHKERRQ(ierr);
224527a8da17SBarry Smith   if (f) {
224627a8da17SBarry Smith     ierr = (*f)(mat,indices);CHKERRQ(ierr);
224727a8da17SBarry Smith   } else {
2248634064b4SBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONG,"Wrong type of matrix to set column indices");
224927a8da17SBarry Smith   }
225027a8da17SBarry Smith   PetscFunctionReturn(0);
225127a8da17SBarry Smith }
225227a8da17SBarry Smith 
22534a2ae208SSatish Balay #undef __FUNCT__
2254985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_SeqBAIJ"
2255985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_SeqBAIJ(Mat A,Vec v,PetscInt idx[])
2256273d9f13SBarry Smith {
2257273d9f13SBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
2258dfbe8321SBarry Smith   PetscErrorCode ierr;
2259c1ac3661SBarry Smith   PetscInt       i,j,n,row,bs,*ai,*aj,mbs;
2260273d9f13SBarry Smith   PetscReal      atmp;
226187828ca2SBarry Smith   PetscScalar    *x,zero = 0.0;
2262273d9f13SBarry Smith   MatScalar      *aa;
2263c1ac3661SBarry Smith   PetscInt       ncols,brow,krow,kcol;
2264273d9f13SBarry Smith 
2265273d9f13SBarry Smith   PetscFunctionBegin;
2266273d9f13SBarry Smith   if (A->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
2267d0f46423SBarry Smith   bs   = A->rmap->bs;
2268273d9f13SBarry Smith   aa   = a->a;
2269273d9f13SBarry Smith   ai   = a->i;
2270273d9f13SBarry Smith   aj   = a->j;
2271273d9f13SBarry Smith   mbs  = a->mbs;
2272273d9f13SBarry Smith 
22732dcb1b2aSMatthew Knepley   ierr = VecSet(v,zero);CHKERRQ(ierr);
22741ebc52fbSHong Zhang   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
2275273d9f13SBarry Smith   ierr = VecGetLocalSize(v,&n);CHKERRQ(ierr);
2276d0f46423SBarry Smith   if (n != A->rmap->N) SETERRQ(PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector");
2277273d9f13SBarry Smith   for (i=0; i<mbs; i++) {
2278273d9f13SBarry Smith     ncols = ai[1] - ai[0]; ai++;
2279273d9f13SBarry Smith     brow  = bs*i;
2280273d9f13SBarry Smith     for (j=0; j<ncols; j++){
2281273d9f13SBarry Smith       for (kcol=0; kcol<bs; kcol++){
2282273d9f13SBarry Smith         for (krow=0; krow<bs; krow++){
2283273d9f13SBarry Smith           atmp = PetscAbsScalar(*aa);aa++;
2284273d9f13SBarry Smith           row = brow + krow;    /* row index */
2285a83599f4SBarry Smith           /* printf("val[%d,%d]: %G\n",row,bcol+kcol,atmp); */
2286985db425SBarry Smith           if (PetscAbsScalar(x[row]) < atmp) {x[row] = atmp; if (idx) idx[row] = bs*(*aj) + kcol;}
2287273d9f13SBarry Smith         }
2288273d9f13SBarry Smith       }
2289273d9f13SBarry Smith       aj++;
2290273d9f13SBarry Smith     }
2291273d9f13SBarry Smith   }
22921ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
2293273d9f13SBarry Smith   PetscFunctionReturn(0);
2294273d9f13SBarry Smith }
2295273d9f13SBarry Smith 
22964a2ae208SSatish Balay #undef __FUNCT__
22973c896bc6SHong Zhang #define __FUNCT__ "MatCopy_SeqBAIJ"
22983c896bc6SHong Zhang PetscErrorCode MatCopy_SeqBAIJ(Mat A,Mat B,MatStructure str)
22993c896bc6SHong Zhang {
23003c896bc6SHong Zhang   PetscErrorCode ierr;
23013c896bc6SHong Zhang 
23023c896bc6SHong Zhang   PetscFunctionBegin;
23033c896bc6SHong Zhang   /* If the two matrices have the same copy implementation, use fast copy. */
23043c896bc6SHong Zhang   if (str == SAME_NONZERO_PATTERN && (A->ops->copy == B->ops->copy)) {
23053c896bc6SHong Zhang     Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data;
23063c896bc6SHong Zhang     Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)B->data;
23073c896bc6SHong Zhang 
2308d0f46423SBarry Smith     if (a->i[A->rmap->N] != b->i[B->rmap->N]) {
23093c896bc6SHong Zhang       SETERRQ(PETSC_ERR_ARG_INCOMP,"Number of nonzeros in two matrices are different");
23103c896bc6SHong Zhang     }
2311d0f46423SBarry Smith     ierr = PetscMemcpy(b->a,a->a,(a->i[A->rmap->N])*sizeof(PetscScalar));CHKERRQ(ierr);
23123c896bc6SHong Zhang   } else {
23133c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
23143c896bc6SHong Zhang   }
23153c896bc6SHong Zhang   PetscFunctionReturn(0);
23163c896bc6SHong Zhang }
23173c896bc6SHong Zhang 
23183c896bc6SHong Zhang #undef __FUNCT__
23194a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_SeqBAIJ"
2320dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_SeqBAIJ(Mat A)
2321273d9f13SBarry Smith {
2322dfbe8321SBarry Smith   PetscErrorCode ierr;
2323273d9f13SBarry Smith 
2324273d9f13SBarry Smith   PetscFunctionBegin;
2325db4efbfdSBarry Smith   ierr =  MatSeqBAIJSetPreallocation_SeqBAIJ(A,-PetscMax(A->rmap->bs,1),PETSC_DEFAULT,0);CHKERRQ(ierr);
2326273d9f13SBarry Smith   PetscFunctionReturn(0);
2327273d9f13SBarry Smith }
2328273d9f13SBarry Smith 
23294a2ae208SSatish Balay #undef __FUNCT__
23304a2ae208SSatish Balay #define __FUNCT__ "MatGetArray_SeqBAIJ"
2331dfbe8321SBarry Smith PetscErrorCode MatGetArray_SeqBAIJ(Mat A,PetscScalar *array[])
2332f2a5309cSSatish Balay {
2333f2a5309cSSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data;
2334f2a5309cSSatish Balay   PetscFunctionBegin;
2335f2a5309cSSatish Balay   *array = a->a;
2336f2a5309cSSatish Balay   PetscFunctionReturn(0);
2337f2a5309cSSatish Balay }
2338f2a5309cSSatish Balay 
23394a2ae208SSatish Balay #undef __FUNCT__
23404a2ae208SSatish Balay #define __FUNCT__ "MatRestoreArray_SeqBAIJ"
2341dfbe8321SBarry Smith PetscErrorCode MatRestoreArray_SeqBAIJ(Mat A,PetscScalar *array[])
2342f2a5309cSSatish Balay {
2343f2a5309cSSatish Balay   PetscFunctionBegin;
2344f2a5309cSSatish Balay   PetscFunctionReturn(0);
2345f2a5309cSSatish Balay }
2346f2a5309cSSatish Balay 
234742ee4b1aSHong Zhang #include "petscblaslapack.h"
234842ee4b1aSHong Zhang #undef __FUNCT__
234942ee4b1aSHong Zhang #define __FUNCT__ "MatAXPY_SeqBAIJ"
2350f4df32b1SMatthew Knepley PetscErrorCode MatAXPY_SeqBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
235142ee4b1aSHong Zhang {
235242ee4b1aSHong Zhang   Mat_SeqBAIJ    *x  = (Mat_SeqBAIJ *)X->data,*y = (Mat_SeqBAIJ *)Y->data;
2353dfbe8321SBarry Smith   PetscErrorCode ierr;
2354d0f46423SBarry Smith   PetscInt       i,bs=Y->rmap->bs,j,bs2;
23550805154bSBarry Smith   PetscBLASInt   one=1,bnz = PetscBLASIntCast(x->nz);
235642ee4b1aSHong Zhang 
235742ee4b1aSHong Zhang   PetscFunctionBegin;
235842ee4b1aSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
2359f4df32b1SMatthew Knepley     PetscScalar alpha = a;
2360f4df32b1SMatthew Knepley     BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one);
2361c537a176SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
2362c4319e64SHong Zhang     if (y->xtoy && y->XtoY != X) {
2363c4319e64SHong Zhang       ierr = PetscFree(y->xtoy);CHKERRQ(ierr);
2364c4319e64SHong Zhang       ierr = MatDestroy(y->XtoY);CHKERRQ(ierr);
2365c537a176SHong Zhang     }
2366c4319e64SHong Zhang     if (!y->xtoy) { /* get xtoy */
2367c4319e64SHong Zhang       ierr = MatAXPYGetxtoy_Private(x->mbs,x->i,x->j,PETSC_NULL, y->i,y->j,PETSC_NULL, &y->xtoy);CHKERRQ(ierr);
2368c4319e64SHong Zhang       y->XtoY = X;
2369c009d632SSatish Balay       ierr = PetscObjectReference((PetscObject)X);CHKERRQ(ierr);
2370c537a176SHong Zhang     }
2371c4319e64SHong Zhang     bs2 = bs*bs;
2372c537a176SHong Zhang     for (i=0; i<x->nz; i++) {
2373c4319e64SHong Zhang       j = 0;
2374c4319e64SHong Zhang       while (j < bs2){
2375f4df32b1SMatthew Knepley         y->a[bs2*y->xtoy[i]+j] += a*(x->a[bs2*i+j]);
2376c4319e64SHong Zhang         j++;
2377c537a176SHong Zhang       }
2378c4319e64SHong Zhang     }
23791e2582c4SBarry Smith     ierr = PetscInfo3(Y,"ratio of nnz(X)/nnz(Y): %D/%D = %G\n",bs2*x->nz,bs2*y->nz,(PetscReal)(bs2*x->nz)/(bs2*y->nz));CHKERRQ(ierr);
238042ee4b1aSHong Zhang   } else {
2381f4df32b1SMatthew Knepley     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
238242ee4b1aSHong Zhang   }
238342ee4b1aSHong Zhang   PetscFunctionReturn(0);
238442ee4b1aSHong Zhang }
238542ee4b1aSHong Zhang 
238699cafbc1SBarry Smith #undef __FUNCT__
238799cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_SeqBAIJ"
238899cafbc1SBarry Smith PetscErrorCode MatRealPart_SeqBAIJ(Mat A)
238999cafbc1SBarry Smith {
239099cafbc1SBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
239199cafbc1SBarry Smith   PetscInt       i,nz = a->bs2*a->i[a->mbs];
2392dd6ea824SBarry Smith   MatScalar      *aa = a->a;
239399cafbc1SBarry Smith 
239499cafbc1SBarry Smith   PetscFunctionBegin;
239599cafbc1SBarry Smith   for (i=0; i<nz; i++) aa[i] = PetscRealPart(aa[i]);
239699cafbc1SBarry Smith   PetscFunctionReturn(0);
239799cafbc1SBarry Smith }
239899cafbc1SBarry Smith 
239999cafbc1SBarry Smith #undef __FUNCT__
240099cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_SeqBAIJ"
240199cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_SeqBAIJ(Mat A)
240299cafbc1SBarry Smith {
240399cafbc1SBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
240499cafbc1SBarry Smith   PetscInt       i,nz = a->bs2*a->i[a->mbs];
2405dd6ea824SBarry Smith   MatScalar      *aa = a->a;
240699cafbc1SBarry Smith 
240799cafbc1SBarry Smith   PetscFunctionBegin;
240899cafbc1SBarry Smith   for (i=0; i<nz; i++) aa[i] = PetscImaginaryPart(aa[i]);
240999cafbc1SBarry Smith   PetscFunctionReturn(0);
241099cafbc1SBarry Smith }
241199cafbc1SBarry Smith 
24123acb8795SBarry Smith extern PetscErrorCode MatFDColoringCreate_SeqAIJ(Mat,ISColoring,MatFDColoring);
24133acb8795SBarry Smith 
24143acb8795SBarry Smith #undef __FUNCT__
24153acb8795SBarry Smith #define __FUNCT__ "MatGetColumnIJ_SeqBAIJ"
24163acb8795SBarry Smith /*
24173acb8795SBarry Smith     Code almost idential to MatGetColumnIJ_SeqAIJ() should share common code
24183acb8795SBarry Smith */
24193acb8795SBarry Smith PetscErrorCode MatGetColumnIJ_SeqBAIJ(Mat A,PetscInt oshift,PetscTruth symmetric,PetscTruth inodecompressed,PetscInt *nn,PetscInt *ia[],PetscInt *ja[],PetscTruth *done)
24203acb8795SBarry Smith {
24213acb8795SBarry Smith   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)A->data;
24223acb8795SBarry Smith   PetscErrorCode ierr;
24233acb8795SBarry Smith   PetscInt       bs = A->rmap->bs,i,*collengths,*cia,*cja,n = A->cmap->n/bs,m = A->rmap->n/bs;
24243acb8795SBarry Smith   PetscInt       nz = a->i[m],row,*jj,mr,col;
24253acb8795SBarry Smith 
24263acb8795SBarry Smith   PetscFunctionBegin;
24273acb8795SBarry Smith   *nn = n;
24283acb8795SBarry Smith   if (!ia) PetscFunctionReturn(0);
24293acb8795SBarry Smith   if (symmetric) {
24303acb8795SBarry Smith     SETERRQ(PETSC_ERR_SUP,"Not for BAIJ matrices");
24313acb8795SBarry Smith   } else {
24323acb8795SBarry Smith     ierr = PetscMalloc((n+1)*sizeof(PetscInt),&collengths);CHKERRQ(ierr);
24333acb8795SBarry Smith     ierr = PetscMemzero(collengths,n*sizeof(PetscInt));CHKERRQ(ierr);
24343acb8795SBarry Smith     ierr = PetscMalloc((n+1)*sizeof(PetscInt),&cia);CHKERRQ(ierr);
24353acb8795SBarry Smith     ierr = PetscMalloc((nz+1)*sizeof(PetscInt),&cja);CHKERRQ(ierr);
24363acb8795SBarry Smith     jj = a->j;
24373acb8795SBarry Smith     for (i=0; i<nz; i++) {
24383acb8795SBarry Smith       collengths[jj[i]]++;
24393acb8795SBarry Smith     }
24403acb8795SBarry Smith     cia[0] = oshift;
24413acb8795SBarry Smith     for (i=0; i<n; i++) {
24423acb8795SBarry Smith       cia[i+1] = cia[i] + collengths[i];
24433acb8795SBarry Smith     }
24443acb8795SBarry Smith     ierr = PetscMemzero(collengths,n*sizeof(PetscInt));CHKERRQ(ierr);
24453acb8795SBarry Smith     jj   = a->j;
24463acb8795SBarry Smith     for (row=0; row<m; row++) {
24473acb8795SBarry Smith       mr = a->i[row+1] - a->i[row];
24483acb8795SBarry Smith       for (i=0; i<mr; i++) {
24493acb8795SBarry Smith         col = *jj++;
24503acb8795SBarry Smith         cja[cia[col] + collengths[col]++ - oshift] = row + oshift;
24513acb8795SBarry Smith       }
24523acb8795SBarry Smith     }
24533acb8795SBarry Smith     ierr = PetscFree(collengths);CHKERRQ(ierr);
24543acb8795SBarry Smith     *ia = cia; *ja = cja;
24553acb8795SBarry Smith   }
24563acb8795SBarry Smith   PetscFunctionReturn(0);
24573acb8795SBarry Smith }
24583acb8795SBarry Smith 
24593acb8795SBarry Smith #undef __FUNCT__
24603acb8795SBarry Smith #define __FUNCT__ "MatRestoreColumnIJ_SeqBAIJ"
24613acb8795SBarry Smith PetscErrorCode MatRestoreColumnIJ_SeqBAIJ(Mat A,PetscInt oshift,PetscTruth symmetric,PetscTruth inodecompressed,PetscInt *n,PetscInt *ia[],PetscInt *ja[],PetscTruth *done)
24623acb8795SBarry Smith {
24633acb8795SBarry Smith   PetscErrorCode ierr;
24643acb8795SBarry Smith 
24653acb8795SBarry Smith   PetscFunctionBegin;
24663acb8795SBarry Smith   if (!ia) PetscFunctionReturn(0);
24673acb8795SBarry Smith   ierr = PetscFree(*ia);CHKERRQ(ierr);
24683acb8795SBarry Smith   ierr = PetscFree(*ja);CHKERRQ(ierr);
24693acb8795SBarry Smith   PetscFunctionReturn(0);
24703acb8795SBarry Smith }
24713acb8795SBarry Smith 
2472*f6d58c54SBarry Smith #undef __FUNCT__
2473*f6d58c54SBarry Smith #define __FUNCT__ "MatFDColoringApply_BAIJ"
2474*f6d58c54SBarry Smith PetscErrorCode PETSCMAT_DLLEXPORT MatFDColoringApply_BAIJ(Mat J,MatFDColoring coloring,Vec x1,MatStructure *flag,void *sctx)
2475*f6d58c54SBarry Smith {
2476*f6d58c54SBarry Smith   PetscErrorCode (*f)(void*,Vec,Vec,void*) = (PetscErrorCode (*)(void*,Vec,Vec,void *))coloring->f;
2477*f6d58c54SBarry Smith   PetscErrorCode ierr;
2478*f6d58c54SBarry Smith   PetscInt       bs = J->rmap->bs,i,j,k,start,end,l,row,col,*srows,**vscaleforrow,m1,m2;
2479*f6d58c54SBarry Smith   PetscScalar    dx,*y,*xx,*w3_array;
2480*f6d58c54SBarry Smith   PetscScalar    *vscale_array;
2481*f6d58c54SBarry Smith   PetscReal      epsilon = coloring->error_rel,umin = coloring->umin,unorm;
2482*f6d58c54SBarry Smith   Vec            w1=coloring->w1,w2=coloring->w2,w3;
2483*f6d58c54SBarry Smith   void           *fctx = coloring->fctx;
2484*f6d58c54SBarry Smith   PetscTruth     flg = PETSC_FALSE;
2485*f6d58c54SBarry Smith   PetscInt       ctype=coloring->ctype,N,col_start=0,col_end=0;
2486*f6d58c54SBarry Smith   Vec            x1_tmp;
2487*f6d58c54SBarry Smith 
2488*f6d58c54SBarry Smith   PetscFunctionBegin;
2489*f6d58c54SBarry Smith   PetscValidHeaderSpecific(J,MAT_COOKIE,1);
2490*f6d58c54SBarry Smith   PetscValidHeaderSpecific(coloring,MAT_FDCOLORING_COOKIE,2);
2491*f6d58c54SBarry Smith   PetscValidHeaderSpecific(x1,VEC_COOKIE,3);
2492*f6d58c54SBarry Smith   if (!f) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Must call MatFDColoringSetFunction()");
2493*f6d58c54SBarry Smith 
2494*f6d58c54SBarry Smith   ierr = PetscLogEventBegin(MAT_FDColoringApply,coloring,J,x1,0);CHKERRQ(ierr);
2495*f6d58c54SBarry Smith   ierr = MatSetUnfactored(J);CHKERRQ(ierr);
2496*f6d58c54SBarry Smith   ierr = PetscOptionsGetTruth(PETSC_NULL,"-mat_fd_coloring_dont_rezero",&flg,PETSC_NULL);CHKERRQ(ierr);
2497*f6d58c54SBarry Smith   if (flg) {
2498*f6d58c54SBarry Smith     ierr = PetscInfo(coloring,"Not calling MatZeroEntries()\n");CHKERRQ(ierr);
2499*f6d58c54SBarry Smith   } else {
2500*f6d58c54SBarry Smith     PetscTruth assembled;
2501*f6d58c54SBarry Smith     ierr = MatAssembled(J,&assembled);CHKERRQ(ierr);
2502*f6d58c54SBarry Smith     if (assembled) {
2503*f6d58c54SBarry Smith       ierr = MatZeroEntries(J);CHKERRQ(ierr);
2504*f6d58c54SBarry Smith     }
2505*f6d58c54SBarry Smith   }
2506*f6d58c54SBarry Smith 
2507*f6d58c54SBarry Smith   x1_tmp = x1;
2508*f6d58c54SBarry Smith   if (!coloring->vscale){
2509*f6d58c54SBarry Smith     ierr = VecDuplicate(x1_tmp,&coloring->vscale);CHKERRQ(ierr);
2510*f6d58c54SBarry Smith   }
2511*f6d58c54SBarry Smith 
2512*f6d58c54SBarry Smith   /*
2513*f6d58c54SBarry Smith     This is a horrible, horrible, hack. See DMMGComputeJacobian_Multigrid() it inproperly sets
2514*f6d58c54SBarry Smith     coloring->F for the coarser grids from the finest
2515*f6d58c54SBarry Smith   */
2516*f6d58c54SBarry Smith   if (coloring->F) {
2517*f6d58c54SBarry Smith     ierr = VecGetLocalSize(coloring->F,&m1);CHKERRQ(ierr);
2518*f6d58c54SBarry Smith     ierr = VecGetLocalSize(w1,&m2);CHKERRQ(ierr);
2519*f6d58c54SBarry Smith     if (m1 != m2) {
2520*f6d58c54SBarry Smith       coloring->F = 0;
2521*f6d58c54SBarry Smith       }
2522*f6d58c54SBarry Smith     }
2523*f6d58c54SBarry Smith 
2524*f6d58c54SBarry Smith   if (coloring->htype[0] == 'w') { /* tacky test; need to make systematic if we add other approaches to computing h*/
2525*f6d58c54SBarry Smith     ierr = VecNorm(x1_tmp,NORM_2,&unorm);CHKERRQ(ierr);
2526*f6d58c54SBarry Smith   }
2527*f6d58c54SBarry Smith   ierr = VecGetOwnershipRange(w1,&start,&end);CHKERRQ(ierr); /* OwnershipRange is used by ghosted x! */
2528*f6d58c54SBarry Smith 
2529*f6d58c54SBarry Smith   /* Set w1 = F(x1) */
2530*f6d58c54SBarry Smith   if (coloring->F) {
2531*f6d58c54SBarry Smith     w1          = coloring->F; /* use already computed value of function */
2532*f6d58c54SBarry Smith     coloring->F = 0;
2533*f6d58c54SBarry Smith   } else {
2534*f6d58c54SBarry Smith     ierr = PetscLogEventBegin(MAT_FDColoringFunction,0,0,0,0);CHKERRQ(ierr);
2535*f6d58c54SBarry Smith     ierr = (*f)(sctx,x1_tmp,w1,fctx);CHKERRQ(ierr);
2536*f6d58c54SBarry Smith     ierr = PetscLogEventEnd(MAT_FDColoringFunction,0,0,0,0);CHKERRQ(ierr);
2537*f6d58c54SBarry Smith   }
2538*f6d58c54SBarry Smith 
2539*f6d58c54SBarry Smith   if (!coloring->w3) {
2540*f6d58c54SBarry Smith     ierr = VecDuplicate(x1_tmp,&coloring->w3);CHKERRQ(ierr);
2541*f6d58c54SBarry Smith     ierr = PetscLogObjectParent(coloring,coloring->w3);CHKERRQ(ierr);
2542*f6d58c54SBarry Smith   }
2543*f6d58c54SBarry Smith   w3 = coloring->w3;
2544*f6d58c54SBarry Smith 
2545*f6d58c54SBarry Smith     CHKMEMQ;
2546*f6d58c54SBarry Smith     /* Compute all the local scale factors, including ghost points */
2547*f6d58c54SBarry Smith   ierr = VecGetLocalSize(x1_tmp,&N);CHKERRQ(ierr);
2548*f6d58c54SBarry Smith   ierr = VecGetArray(x1_tmp,&xx);CHKERRQ(ierr);
2549*f6d58c54SBarry Smith   ierr = VecGetArray(coloring->vscale,&vscale_array);CHKERRQ(ierr);
2550*f6d58c54SBarry Smith   if (ctype == IS_COLORING_GHOSTED){
2551*f6d58c54SBarry Smith     col_start = 0; col_end = N;
2552*f6d58c54SBarry Smith   } else if (ctype == IS_COLORING_GLOBAL){
2553*f6d58c54SBarry Smith     xx = xx - start;
2554*f6d58c54SBarry Smith     vscale_array = vscale_array - start;
2555*f6d58c54SBarry Smith     col_start = start; col_end = N + start;
2556*f6d58c54SBarry Smith   }    CHKMEMQ;
2557*f6d58c54SBarry Smith   for (col=col_start; col<col_end; col++){
2558*f6d58c54SBarry Smith     /* Loop over each local column, vscale[col] = 1./(epsilon*dx[col]) */
2559*f6d58c54SBarry Smith     if (coloring->htype[0] == 'w') {
2560*f6d58c54SBarry Smith       dx = 1.0 + unorm;
2561*f6d58c54SBarry Smith     } else {
2562*f6d58c54SBarry Smith       dx  = xx[col];
2563*f6d58c54SBarry Smith     }
2564*f6d58c54SBarry Smith     if (dx == 0.0) dx = 1.0;
2565*f6d58c54SBarry Smith #if !defined(PETSC_USE_COMPLEX)
2566*f6d58c54SBarry Smith     if (dx < umin && dx >= 0.0)      dx = umin;
2567*f6d58c54SBarry Smith     else if (dx < 0.0 && dx > -umin) dx = -umin;
2568*f6d58c54SBarry Smith #else
2569*f6d58c54SBarry Smith     if (PetscAbsScalar(dx) < umin && PetscRealPart(dx) >= 0.0)     dx = umin;
2570*f6d58c54SBarry Smith     else if (PetscRealPart(dx) < 0.0 && PetscAbsScalar(dx) < umin) dx = -umin;
2571*f6d58c54SBarry Smith #endif
2572*f6d58c54SBarry Smith     dx               *= epsilon;
2573*f6d58c54SBarry Smith     vscale_array[col] = 1.0/dx;
2574*f6d58c54SBarry Smith   }     CHKMEMQ;
2575*f6d58c54SBarry Smith   if (ctype == IS_COLORING_GLOBAL)  vscale_array = vscale_array + start;
2576*f6d58c54SBarry Smith   ierr = VecRestoreArray(coloring->vscale,&vscale_array);CHKERRQ(ierr);
2577*f6d58c54SBarry Smith   if (ctype == IS_COLORING_GLOBAL){
2578*f6d58c54SBarry Smith     ierr = VecGhostUpdateBegin(coloring->vscale,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2579*f6d58c54SBarry Smith     ierr = VecGhostUpdateEnd(coloring->vscale,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2580*f6d58c54SBarry Smith   }
2581*f6d58c54SBarry Smith         CHKMEMQ;
2582*f6d58c54SBarry Smith   if (coloring->vscaleforrow) {
2583*f6d58c54SBarry Smith     vscaleforrow = coloring->vscaleforrow;
2584*f6d58c54SBarry Smith   } else {
2585*f6d58c54SBarry Smith     SETERRQ(PETSC_ERR_ARG_NULL,"Null Object: coloring->vscaleforrow");
2586*f6d58c54SBarry Smith   }
2587*f6d58c54SBarry Smith 
2588*f6d58c54SBarry Smith 
2589*f6d58c54SBarry Smith   ierr = PetscMalloc(bs*sizeof(PetscInt),&srows);CHKERRQ(ierr);
2590*f6d58c54SBarry Smith   /*
2591*f6d58c54SBarry Smith     Loop over each color
2592*f6d58c54SBarry Smith   */
2593*f6d58c54SBarry Smith   ierr = VecGetArray(coloring->vscale,&vscale_array);CHKERRQ(ierr);
2594*f6d58c54SBarry Smith   for (k=0; k<coloring->ncolors; k++) {
2595*f6d58c54SBarry Smith     coloring->currentcolor = k;
2596*f6d58c54SBarry Smith     for (i=0; i<bs; i++) {
2597*f6d58c54SBarry Smith       ierr = VecCopy(x1_tmp,w3);CHKERRQ(ierr);
2598*f6d58c54SBarry Smith       ierr = VecGetArray(w3,&w3_array);CHKERRQ(ierr);
2599*f6d58c54SBarry Smith       if (ctype == IS_COLORING_GLOBAL) w3_array = w3_array - start;
2600*f6d58c54SBarry Smith       /*
2601*f6d58c54SBarry Smith 	Loop over each column associated with color
2602*f6d58c54SBarry Smith 	adding the perturbation to the vector w3.
2603*f6d58c54SBarry Smith       */
2604*f6d58c54SBarry Smith       for (l=0; l<coloring->ncolumns[k]; l++) {
2605*f6d58c54SBarry Smith 	col = i + bs*coloring->columns[k][l];    /* local column of the matrix we are probing for */
2606*f6d58c54SBarry Smith 	if (coloring->htype[0] == 'w') {
2607*f6d58c54SBarry Smith 	  dx = 1.0 + unorm;
2608*f6d58c54SBarry Smith 	} else {
2609*f6d58c54SBarry Smith 	  dx  = xx[col];
2610*f6d58c54SBarry Smith 	}
2611*f6d58c54SBarry Smith 	if (dx == 0.0) dx = 1.0;
2612*f6d58c54SBarry Smith #if !defined(PETSC_USE_COMPLEX)
2613*f6d58c54SBarry Smith 	if (dx < umin && dx >= 0.0)      dx = umin;
2614*f6d58c54SBarry Smith 	else if (dx < 0.0 && dx > -umin) dx = -umin;
2615*f6d58c54SBarry Smith #else
2616*f6d58c54SBarry Smith 	if (PetscAbsScalar(dx) < umin && PetscRealPart(dx) >= 0.0)     dx = umin;
2617*f6d58c54SBarry Smith 	else if (PetscRealPart(dx) < 0.0 && PetscAbsScalar(dx) < umin) dx = -umin;
2618*f6d58c54SBarry Smith #endif
2619*f6d58c54SBarry Smith 	dx            *= epsilon;
2620*f6d58c54SBarry Smith 	if (!PetscAbsScalar(dx)) SETERRQ(PETSC_ERR_PLIB,"Computed 0 differencing parameter");
2621*f6d58c54SBarry Smith 	w3_array[col] += dx;
2622*f6d58c54SBarry Smith       }
2623*f6d58c54SBarry Smith       if (ctype == IS_COLORING_GLOBAL) w3_array = w3_array + start;
2624*f6d58c54SBarry Smith       ierr = VecRestoreArray(w3,&w3_array);CHKERRQ(ierr);
2625*f6d58c54SBarry Smith 
2626*f6d58c54SBarry Smith       /*
2627*f6d58c54SBarry Smith 	Evaluate function at w3 = x1 + dx (here dx is a vector of perturbations)
2628*f6d58c54SBarry Smith 	w2 = F(x1 + dx) - F(x1)
2629*f6d58c54SBarry Smith       */
2630*f6d58c54SBarry Smith       ierr = PetscLogEventBegin(MAT_FDColoringFunction,0,0,0,0);CHKERRQ(ierr);
2631*f6d58c54SBarry Smith       ierr = (*f)(sctx,w3,w2,fctx);CHKERRQ(ierr);
2632*f6d58c54SBarry Smith       ierr = PetscLogEventEnd(MAT_FDColoringFunction,0,0,0,0);CHKERRQ(ierr);
2633*f6d58c54SBarry Smith       ierr = VecAXPY(w2,-1.0,w1);CHKERRQ(ierr);
2634*f6d58c54SBarry Smith 
2635*f6d58c54SBarry Smith       /*
2636*f6d58c54SBarry Smith 	Loop over rows of vector, putting results into Jacobian matrix
2637*f6d58c54SBarry Smith       */
2638*f6d58c54SBarry Smith       ierr = VecGetArray(w2,&y);CHKERRQ(ierr);
2639*f6d58c54SBarry Smith       for (l=0; l<coloring->nrows[k]; l++) {
2640*f6d58c54SBarry Smith 	row    = bs*coloring->rows[k][l];             /* local row index */
2641*f6d58c54SBarry Smith 	col    = i + bs*coloring->columnsforrow[k][l];    /* global column index */
2642*f6d58c54SBarry Smith         for (j=0; j<bs; j++) {
2643*f6d58c54SBarry Smith   	  y[row+j] *= vscale_array[j+bs*vscaleforrow[k][l]];
2644*f6d58c54SBarry Smith           srows[j]  = row + start + j;
2645*f6d58c54SBarry Smith         }
2646*f6d58c54SBarry Smith 	ierr   = MatSetValues(J,bs,srows,1,&col,y+row,INSERT_VALUES);CHKERRQ(ierr);
2647*f6d58c54SBarry Smith       }
2648*f6d58c54SBarry Smith       ierr = VecRestoreArray(w2,&y);CHKERRQ(ierr);
2649*f6d58c54SBarry Smith     }
2650*f6d58c54SBarry Smith   } /* endof for each color */
2651*f6d58c54SBarry Smith   if (ctype == IS_COLORING_GLOBAL) xx = xx + start;
2652*f6d58c54SBarry Smith   ierr = VecRestoreArray(coloring->vscale,&vscale_array);CHKERRQ(ierr);
2653*f6d58c54SBarry Smith   ierr = VecRestoreArray(x1_tmp,&xx);CHKERRQ(ierr);
2654*f6d58c54SBarry Smith   ierr = PetscFree(srows);CHKERRQ(ierr);
2655*f6d58c54SBarry Smith 
2656*f6d58c54SBarry Smith   coloring->currentcolor = -1;
2657*f6d58c54SBarry Smith   ierr  = MatAssemblyBegin(J,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2658*f6d58c54SBarry Smith   ierr  = MatAssemblyEnd(J,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2659*f6d58c54SBarry Smith   ierr = PetscLogEventEnd(MAT_FDColoringApply,coloring,J,x1,0);CHKERRQ(ierr);
2660*f6d58c54SBarry Smith   PetscFunctionReturn(0);
2661*f6d58c54SBarry Smith }
266299cafbc1SBarry Smith 
26632593348eSBarry Smith /* -------------------------------------------------------------------*/
2664cc2dc46cSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_SeqBAIJ,
2665cc2dc46cSBarry Smith        MatGetRow_SeqBAIJ,
2666cc2dc46cSBarry Smith        MatRestoreRow_SeqBAIJ,
2667cc2dc46cSBarry Smith        MatMult_SeqBAIJ_N,
266897304618SKris Buschelman /* 4*/ MatMultAdd_SeqBAIJ_N,
26697c922b88SBarry Smith        MatMultTranspose_SeqBAIJ,
26707c922b88SBarry Smith        MatMultTransposeAdd_SeqBAIJ,
2671db4efbfdSBarry Smith        0,
2672cc2dc46cSBarry Smith        0,
2673cc2dc46cSBarry Smith        0,
267497304618SKris Buschelman /*10*/ 0,
2675cc2dc46cSBarry Smith        MatLUFactor_SeqBAIJ,
2676cc2dc46cSBarry Smith        0,
2677b6490206SBarry Smith        0,
2678f2501298SSatish Balay        MatTranspose_SeqBAIJ,
267997304618SKris Buschelman /*15*/ MatGetInfo_SeqBAIJ,
2680cc2dc46cSBarry Smith        MatEqual_SeqBAIJ,
2681cc2dc46cSBarry Smith        MatGetDiagonal_SeqBAIJ,
2682cc2dc46cSBarry Smith        MatDiagonalScale_SeqBAIJ,
2683cc2dc46cSBarry Smith        MatNorm_SeqBAIJ,
268497304618SKris Buschelman /*20*/ 0,
2685cc2dc46cSBarry Smith        MatAssemblyEnd_SeqBAIJ,
2686cc2dc46cSBarry Smith        MatSetOption_SeqBAIJ,
2687cc2dc46cSBarry Smith        MatZeroEntries_SeqBAIJ,
2688d519adbfSMatthew Knepley /*24*/ MatZeroRows_SeqBAIJ,
2689db4efbfdSBarry Smith        0,
2690db4efbfdSBarry Smith        0,
2691db4efbfdSBarry Smith        0,
2692db4efbfdSBarry Smith        0,
2693d519adbfSMatthew Knepley /*29*/ MatSetUpPreallocation_SeqBAIJ,
2694db4efbfdSBarry Smith        0,
2695db4efbfdSBarry Smith        0,
2696f2a5309cSSatish Balay        MatGetArray_SeqBAIJ,
2697f2a5309cSSatish Balay        MatRestoreArray_SeqBAIJ,
2698d519adbfSMatthew Knepley /*34*/ MatDuplicate_SeqBAIJ,
2699cc2dc46cSBarry Smith        0,
2700cc2dc46cSBarry Smith        0,
2701cc2dc46cSBarry Smith        MatILUFactor_SeqBAIJ,
2702cc2dc46cSBarry Smith        0,
2703d519adbfSMatthew Knepley /*39*/ MatAXPY_SeqBAIJ,
2704cc2dc46cSBarry Smith        MatGetSubMatrices_SeqBAIJ,
2705cc2dc46cSBarry Smith        MatIncreaseOverlap_SeqBAIJ,
2706cc2dc46cSBarry Smith        MatGetValues_SeqBAIJ,
27073c896bc6SHong Zhang        MatCopy_SeqBAIJ,
2708d519adbfSMatthew Knepley /*44*/ 0,
2709cc2dc46cSBarry Smith        MatScale_SeqBAIJ,
2710cc2dc46cSBarry Smith        0,
2711cc2dc46cSBarry Smith        0,
2712c8342467SHong Zhang        MatILUDTFactor_SeqBAIJ,
2713d519adbfSMatthew Knepley /*49*/ 0,
27143b2fbd54SBarry Smith        MatGetRowIJ_SeqBAIJ,
271592c4ed94SBarry Smith        MatRestoreRowIJ_SeqBAIJ,
27163acb8795SBarry Smith        MatGetColumnIJ_SeqBAIJ,
27173acb8795SBarry Smith        MatRestoreColumnIJ_SeqBAIJ,
27183acb8795SBarry Smith /*54*/ MatFDColoringCreate_SeqAIJ,
2719cc2dc46cSBarry Smith        0,
2720cc2dc46cSBarry Smith        0,
2721cc2dc46cSBarry Smith        0,
2722d3825aa8SBarry Smith        MatSetValuesBlocked_SeqBAIJ,
2723d519adbfSMatthew Knepley /*59*/ MatGetSubMatrix_SeqBAIJ,
2724b9b97703SBarry Smith        MatDestroy_SeqBAIJ,
2725b9b97703SBarry Smith        MatView_SeqBAIJ,
2726357abbc8SBarry Smith        0,
2727273d9f13SBarry Smith        0,
2728d519adbfSMatthew Knepley /*64*/ 0,
2729273d9f13SBarry Smith        0,
2730273d9f13SBarry Smith        0,
2731273d9f13SBarry Smith        0,
2732273d9f13SBarry Smith        0,
2733d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_SeqBAIJ,
2734273d9f13SBarry Smith        0,
2735c87e5d42SMatthew Knepley        MatConvert_Basic,
273697304618SKris Buschelman        0,
273797304618SKris Buschelman        0,
2738d519adbfSMatthew Knepley /*74*/ 0,
2739*f6d58c54SBarry Smith        MatFDColoringApply_BAIJ,
274097304618SKris Buschelman        0,
274197304618SKris Buschelman        0,
274297304618SKris Buschelman        0,
2743d519adbfSMatthew Knepley /*79*/ 0,
274497304618SKris Buschelman        0,
274597304618SKris Buschelman        0,
274697304618SKris Buschelman        0,
2747865e5f61SKris Buschelman        MatLoad_SeqBAIJ,
2748d519adbfSMatthew Knepley /*84*/ 0,
2749b01c7715SBarry Smith        0,
2750b01c7715SBarry Smith        0,
2751b01c7715SBarry Smith        0,
2752865e5f61SKris Buschelman        0,
2753d519adbfSMatthew Knepley /*89*/ 0,
2754865e5f61SKris Buschelman        0,
2755865e5f61SKris Buschelman        0,
2756865e5f61SKris Buschelman        0,
2757865e5f61SKris Buschelman        0,
2758d519adbfSMatthew Knepley /*94*/ 0,
2759865e5f61SKris Buschelman        0,
2760865e5f61SKris Buschelman        0,
276199cafbc1SBarry Smith        0,
276299cafbc1SBarry Smith        0,
2763d519adbfSMatthew Knepley /*99*/0,
276499cafbc1SBarry Smith        0,
276599cafbc1SBarry Smith        0,
276699cafbc1SBarry Smith        0,
276799cafbc1SBarry Smith        0,
2768d519adbfSMatthew Knepley /*104*/0,
276999cafbc1SBarry Smith        MatRealPart_SeqBAIJ,
27702af78befSBarry Smith        MatImaginaryPart_SeqBAIJ,
27712af78befSBarry Smith        0,
27722af78befSBarry Smith        0,
2773d519adbfSMatthew Knepley /*109*/0,
27742af78befSBarry Smith        0,
27752af78befSBarry Smith        0,
27762af78befSBarry Smith        0,
27772af78befSBarry Smith        MatMissingDiagonal_SeqBAIJ
2778d519adbfSMatthew Knepley /*114*/
277999cafbc1SBarry Smith };
27802593348eSBarry Smith 
27813e90b805SBarry Smith EXTERN_C_BEGIN
27824a2ae208SSatish Balay #undef __FUNCT__
27834a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_SeqBAIJ"
2784be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_SeqBAIJ(Mat mat)
27853e90b805SBarry Smith {
27863e90b805SBarry Smith   Mat_SeqBAIJ    *aij = (Mat_SeqBAIJ *)mat->data;
2787d0f46423SBarry Smith   PetscInt       nz = aij->i[mat->rmap->N]*mat->rmap->bs*aij->bs2;
2788dfbe8321SBarry Smith   PetscErrorCode ierr;
27893e90b805SBarry Smith 
27903e90b805SBarry Smith   PetscFunctionBegin;
27913e90b805SBarry Smith   if (aij->nonew != 1) {
2792512a5fc5SBarry Smith     SETERRQ(PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first");
27933e90b805SBarry Smith   }
27943e90b805SBarry Smith 
27953e90b805SBarry Smith   /* allocate space for values if not already there */
27963e90b805SBarry Smith   if (!aij->saved_values) {
279787828ca2SBarry Smith     ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&aij->saved_values);CHKERRQ(ierr);
27983e90b805SBarry Smith   }
27993e90b805SBarry Smith 
28003e90b805SBarry Smith   /* copy values over */
280187828ca2SBarry Smith   ierr = PetscMemcpy(aij->saved_values,aij->a,nz*sizeof(PetscScalar));CHKERRQ(ierr);
28023e90b805SBarry Smith   PetscFunctionReturn(0);
28033e90b805SBarry Smith }
28043e90b805SBarry Smith EXTERN_C_END
28053e90b805SBarry Smith 
28063e90b805SBarry Smith EXTERN_C_BEGIN
28074a2ae208SSatish Balay #undef __FUNCT__
28084a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_SeqBAIJ"
2809be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_SeqBAIJ(Mat mat)
28103e90b805SBarry Smith {
28113e90b805SBarry Smith   Mat_SeqBAIJ    *aij = (Mat_SeqBAIJ *)mat->data;
28126849ba73SBarry Smith   PetscErrorCode ierr;
2813d0f46423SBarry Smith   PetscInt       nz = aij->i[mat->rmap->N]*mat->rmap->bs*aij->bs2;
28143e90b805SBarry Smith 
28153e90b805SBarry Smith   PetscFunctionBegin;
28163e90b805SBarry Smith   if (aij->nonew != 1) {
2817512a5fc5SBarry Smith     SETERRQ(PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first");
28183e90b805SBarry Smith   }
28193e90b805SBarry Smith   if (!aij->saved_values) {
2820634064b4SBarry Smith     SETERRQ(PETSC_ERR_ORDER,"Must call MatStoreValues(A);first");
28213e90b805SBarry Smith   }
28223e90b805SBarry Smith 
28233e90b805SBarry Smith   /* copy values over */
282487828ca2SBarry Smith   ierr = PetscMemcpy(aij->a,aij->saved_values,nz*sizeof(PetscScalar));CHKERRQ(ierr);
28253e90b805SBarry Smith   PetscFunctionReturn(0);
28263e90b805SBarry Smith }
28273e90b805SBarry Smith EXTERN_C_END
28283e90b805SBarry Smith 
2829273d9f13SBarry Smith EXTERN_C_BEGIN
2830f69a0ea3SMatthew Knepley extern PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_SeqBAIJ_SeqAIJ(Mat, MatType,MatReuse,Mat*);
2831f69a0ea3SMatthew Knepley extern PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_SeqBAIJ_SeqSBAIJ(Mat, MatType,MatReuse,Mat*);
2832273d9f13SBarry Smith EXTERN_C_END
2833273d9f13SBarry Smith 
2834273d9f13SBarry Smith EXTERN_C_BEGIN
28354a2ae208SSatish Balay #undef __FUNCT__
2836a23d5eceSKris Buschelman #define __FUNCT__ "MatSeqBAIJSetPreallocation_SeqBAIJ"
2837be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJSetPreallocation_SeqBAIJ(Mat B,PetscInt bs,PetscInt nz,PetscInt *nnz)
2838a23d5eceSKris Buschelman {
2839a23d5eceSKris Buschelman   Mat_SeqBAIJ    *b;
28406849ba73SBarry Smith   PetscErrorCode ierr;
2841db4efbfdSBarry Smith   PetscInt       i,mbs,nbs,bs2,newbs = PetscAbs(bs);
2842ab93d7beSBarry Smith   PetscTruth     flg,skipallocation = PETSC_FALSE;
2843a23d5eceSKris Buschelman 
2844a23d5eceSKris Buschelman   PetscFunctionBegin;
2845a23d5eceSKris Buschelman 
2846ab93d7beSBarry Smith   if (nz == MAT_SKIP_ALLOCATION) {
2847ab93d7beSBarry Smith     skipallocation = PETSC_TRUE;
2848ab93d7beSBarry Smith     nz             = 0;
2849ab93d7beSBarry Smith   }
28508c07d4e3SBarry Smith 
2851db4efbfdSBarry Smith   if (bs < 0) {
28527adad957SLisandro Dalcin     ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Block options for SEQBAIJ matrix 1","Mat");CHKERRQ(ierr);
2853db4efbfdSBarry Smith       ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatSeqBAIJSetPreallocation",newbs,&newbs,PETSC_NULL);CHKERRQ(ierr);
28548c07d4e3SBarry Smith     ierr = PetscOptionsEnd();CHKERRQ(ierr);
2855db4efbfdSBarry Smith     bs   = PetscAbs(bs);
2856db4efbfdSBarry Smith   }
2857a23d5eceSKris Buschelman   if (nnz && newbs != bs) {
2858634064b4SBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONG,"Cannot change blocksize from command line if setting nnz");
2859a23d5eceSKris Buschelman   }
2860a23d5eceSKris Buschelman   bs   = newbs;
2861a23d5eceSKris Buschelman 
28627408324eSLisandro Dalcin   ierr = PetscMapSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
28637408324eSLisandro Dalcin   ierr = PetscMapSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
2864d0f46423SBarry Smith   ierr = PetscMapSetUp(B->rmap);CHKERRQ(ierr);
2865d0f46423SBarry Smith   ierr = PetscMapSetUp(B->cmap);CHKERRQ(ierr);
2866899cda47SBarry Smith 
2867899cda47SBarry Smith   B->preallocated = PETSC_TRUE;
2868899cda47SBarry Smith 
2869d0f46423SBarry Smith   mbs  = B->rmap->n/bs;
2870d0f46423SBarry Smith   nbs  = B->cmap->n/bs;
2871a23d5eceSKris Buschelman   bs2  = bs*bs;
2872a23d5eceSKris Buschelman 
2873d0f46423SBarry Smith   if (mbs*bs!=B->rmap->n || nbs*bs!=B->cmap->n) {
2874d0f46423SBarry Smith     SETERRQ3(PETSC_ERR_ARG_SIZ,"Number rows %D, cols %D must be divisible by blocksize %D",B->rmap->N,B->cmap->n,bs);
2875a23d5eceSKris Buschelman   }
2876a23d5eceSKris Buschelman 
2877a23d5eceSKris Buschelman   if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 5;
287877431f27SBarry Smith   if (nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"nz cannot be less than 0: value %D",nz);
2879a23d5eceSKris Buschelman   if (nnz) {
2880a23d5eceSKris Buschelman     for (i=0; i<mbs; i++) {
288177431f27SBarry Smith       if (nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"nnz cannot be less than 0: local row %D value %D",i,nnz[i]);
288277431f27SBarry Smith       if (nnz[i] > nbs) SETERRQ3(PETSC_ERR_ARG_OUTOFRANGE,"nnz cannot be greater than block row length: local row %D value %D rowlength %D",i,nnz[i],nbs);
2883a23d5eceSKris Buschelman     }
2884a23d5eceSKris Buschelman   }
2885a23d5eceSKris Buschelman 
2886a23d5eceSKris Buschelman   b       = (Mat_SeqBAIJ*)B->data;
28877adad957SLisandro Dalcin   ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Optimize options for SEQBAIJ matrix 2 ","Mat");CHKERRQ(ierr);
28888c07d4e3SBarry Smith     ierr = PetscOptionsTruth("-mat_no_unroll","Do not optimize for block size (slow)",PETSC_NULL,PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr);
28898c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
28908c07d4e3SBarry Smith 
2891a23d5eceSKris Buschelman   if (!flg) {
2892a23d5eceSKris Buschelman     switch (bs) {
2893a23d5eceSKris Buschelman     case 1:
2894a23d5eceSKris Buschelman       B->ops->mult            = MatMult_SeqBAIJ_1;
2895a23d5eceSKris Buschelman       B->ops->multadd         = MatMultAdd_SeqBAIJ_1;
28966d3beeddSMatthew Knepley       B->ops->pbrelax         = MatPBRelax_SeqBAIJ_1;
2897a23d5eceSKris Buschelman       break;
2898a23d5eceSKris Buschelman     case 2:
2899a23d5eceSKris Buschelman       B->ops->mult            = MatMult_SeqBAIJ_2;
2900a23d5eceSKris Buschelman       B->ops->multadd         = MatMultAdd_SeqBAIJ_2;
2901b01c7715SBarry Smith       B->ops->pbrelax         = MatPBRelax_SeqBAIJ_2;
2902a23d5eceSKris Buschelman       break;
2903a23d5eceSKris Buschelman     case 3:
2904a23d5eceSKris Buschelman       B->ops->mult            = MatMult_SeqBAIJ_3;
2905a23d5eceSKris Buschelman       B->ops->multadd         = MatMultAdd_SeqBAIJ_3;
2906b01c7715SBarry Smith       B->ops->pbrelax         = MatPBRelax_SeqBAIJ_3;
2907a23d5eceSKris Buschelman       break;
2908a23d5eceSKris Buschelman     case 4:
2909a23d5eceSKris Buschelman       B->ops->mult            = MatMult_SeqBAIJ_4;
2910a23d5eceSKris Buschelman       B->ops->multadd         = MatMultAdd_SeqBAIJ_4;
2911b01c7715SBarry Smith       B->ops->pbrelax         = MatPBRelax_SeqBAIJ_4;
2912a23d5eceSKris Buschelman       break;
2913a23d5eceSKris Buschelman     case 5:
2914a23d5eceSKris Buschelman       B->ops->mult            = MatMult_SeqBAIJ_5;
2915a23d5eceSKris Buschelman       B->ops->multadd         = MatMultAdd_SeqBAIJ_5;
2916b01c7715SBarry Smith       B->ops->pbrelax         = MatPBRelax_SeqBAIJ_5;
2917a23d5eceSKris Buschelman       break;
2918a23d5eceSKris Buschelman     case 6:
2919a23d5eceSKris Buschelman       B->ops->mult            = MatMult_SeqBAIJ_6;
2920a23d5eceSKris Buschelman       B->ops->multadd         = MatMultAdd_SeqBAIJ_6;
29216d3beeddSMatthew Knepley       B->ops->pbrelax         = MatPBRelax_SeqBAIJ_6;
2922a23d5eceSKris Buschelman       break;
2923a23d5eceSKris Buschelman     case 7:
2924a23d5eceSKris Buschelman       B->ops->mult            = MatMult_SeqBAIJ_7;
2925a23d5eceSKris Buschelman       B->ops->multadd         = MatMultAdd_SeqBAIJ_7;
29266d3beeddSMatthew Knepley       B->ops->pbrelax         = MatPBRelax_SeqBAIJ_7;
2927a23d5eceSKris Buschelman       break;
2928a23d5eceSKris Buschelman     default:
2929a23d5eceSKris Buschelman       B->ops->mult            = MatMult_SeqBAIJ_N;
2930a23d5eceSKris Buschelman       B->ops->multadd         = MatMultAdd_SeqBAIJ_N;
2931a23d5eceSKris Buschelman       break;
2932a23d5eceSKris Buschelman     }
2933a23d5eceSKris Buschelman   }
2934d0f46423SBarry Smith   B->rmap->bs      = bs;
2935a23d5eceSKris Buschelman   b->mbs     = mbs;
2936a23d5eceSKris Buschelman   b->nbs     = nbs;
2937ab93d7beSBarry Smith   if (!skipallocation) {
29382ee49352SLisandro Dalcin     if (!b->imax) {
2939ab93d7beSBarry Smith       ierr = PetscMalloc2(mbs,PetscInt,&b->imax,mbs,PetscInt,&b->ilen);CHKERRQ(ierr);
29402ee49352SLisandro Dalcin     }
2941ab93d7beSBarry Smith     /* b->ilen will count nonzeros in each block row so far. */
2942ab93d7beSBarry Smith     for (i=0; i<mbs; i++) { b->ilen[i] = 0;}
2943a23d5eceSKris Buschelman     if (!nnz) {
2944a23d5eceSKris Buschelman       if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 5;
2945a23d5eceSKris Buschelman       else if (nz <= 0)        nz = 1;
2946a23d5eceSKris Buschelman       for (i=0; i<mbs; i++) b->imax[i] = nz;
2947a23d5eceSKris Buschelman       nz = nz*mbs;
2948a23d5eceSKris Buschelman     } else {
2949a23d5eceSKris Buschelman       nz = 0;
2950a23d5eceSKris Buschelman       for (i=0; i<mbs; i++) {b->imax[i] = nnz[i]; nz += nnz[i];}
2951a23d5eceSKris Buschelman     }
2952a23d5eceSKris Buschelman 
2953a23d5eceSKris Buschelman     /* allocate the matrix space */
29542ee49352SLisandro Dalcin     ierr = MatSeqXAIJFreeAIJ(B,&b->a,&b->j,&b->i);CHKERRQ(ierr);
2955d0f46423SBarry Smith     ierr = PetscMalloc3(bs2*nz,PetscScalar,&b->a,nz,PetscInt,&b->j,B->rmap->N+1,PetscInt,&b->i);CHKERRQ(ierr);
2956d0f46423SBarry Smith     ierr = PetscLogObjectMemory(B,(B->rmap->N+1)*sizeof(PetscInt)+nz*(bs2*sizeof(PetscScalar)+sizeof(PetscInt)));CHKERRQ(ierr);
2957a23d5eceSKris Buschelman     ierr  = PetscMemzero(b->a,nz*bs2*sizeof(MatScalar));CHKERRQ(ierr);
2958c1ac3661SBarry Smith     ierr  = PetscMemzero(b->j,nz*sizeof(PetscInt));CHKERRQ(ierr);
2959a23d5eceSKris Buschelman     b->singlemalloc = PETSC_TRUE;
2960a23d5eceSKris Buschelman     b->i[0] = 0;
2961a23d5eceSKris Buschelman     for (i=1; i<mbs+1; i++) {
2962a23d5eceSKris Buschelman       b->i[i] = b->i[i-1] + b->imax[i-1];
2963a23d5eceSKris Buschelman     }
2964e6b907acSBarry Smith     b->free_a     = PETSC_TRUE;
2965e6b907acSBarry Smith     b->free_ij    = PETSC_TRUE;
2966e811da20SHong Zhang   } else {
2967e6b907acSBarry Smith     b->free_a     = PETSC_FALSE;
2968e6b907acSBarry Smith     b->free_ij    = PETSC_FALSE;
2969ab93d7beSBarry Smith   }
2970a23d5eceSKris Buschelman 
2971d0f46423SBarry Smith   B->rmap->bs          = bs;
2972a23d5eceSKris Buschelman   b->bs2              = bs2;
2973a23d5eceSKris Buschelman   b->mbs              = mbs;
2974a23d5eceSKris Buschelman   b->nz               = 0;
2975a23d5eceSKris Buschelman   b->maxnz            = nz*bs2;
2976a23d5eceSKris Buschelman   B->info.nz_unneeded = (PetscReal)b->maxnz;
2977a23d5eceSKris Buschelman   PetscFunctionReturn(0);
2978a23d5eceSKris Buschelman }
2979a23d5eceSKris Buschelman EXTERN_C_END
2980a23d5eceSKris Buschelman 
2981b24902e0SBarry Smith EXTERN_C_BEGIN
2982725b52f3SLisandro Dalcin #undef __FUNCT__
2983725b52f3SLisandro Dalcin #define __FUNCT__ "MatSeqBAIJSetPreallocationCSR_SeqBAIJ"
2984cf12db73SBarry Smith PetscErrorCode MatSeqBAIJSetPreallocationCSR_SeqBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[])
2985725b52f3SLisandro Dalcin {
2986725b52f3SLisandro Dalcin   PetscInt       i,m,nz,nz_max=0,*nnz;
2987725b52f3SLisandro Dalcin   PetscScalar    *values=0;
2988725b52f3SLisandro Dalcin   PetscErrorCode ierr;
2989725b52f3SLisandro Dalcin 
2990725b52f3SLisandro Dalcin   PetscFunctionBegin;
2991725b52f3SLisandro Dalcin 
2992725b52f3SLisandro Dalcin   if (bs < 1) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs);
29937408324eSLisandro Dalcin 
29947408324eSLisandro Dalcin   ierr = PetscMapSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
29957408324eSLisandro Dalcin   ierr = PetscMapSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
2996d0f46423SBarry Smith   ierr = PetscMapSetUp(B->rmap);CHKERRQ(ierr);
2997d0f46423SBarry Smith   ierr = PetscMapSetUp(B->cmap);CHKERRQ(ierr);
2998d0f46423SBarry Smith   m = B->rmap->n/bs;
2999725b52f3SLisandro Dalcin 
3000cf12db73SBarry Smith   if (ii[0] != 0) { SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %D",ii[0]); }
3001725b52f3SLisandro Dalcin   ierr = PetscMalloc((m+1) * sizeof(PetscInt), &nnz);CHKERRQ(ierr);
3002725b52f3SLisandro Dalcin   for(i=0; i<m; i++) {
3003cf12db73SBarry Smith     nz = ii[i+1]- ii[i];
3004725b52f3SLisandro Dalcin     if (nz < 0) { SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE, "Local row %D has a negative number of columns %D",i,nz); }
3005725b52f3SLisandro Dalcin     nz_max = PetscMax(nz_max, nz);
3006725b52f3SLisandro Dalcin     nnz[i] = nz;
3007725b52f3SLisandro Dalcin   }
3008725b52f3SLisandro Dalcin   ierr = MatSeqBAIJSetPreallocation(B,bs,0,nnz);CHKERRQ(ierr);
3009725b52f3SLisandro Dalcin   ierr = PetscFree(nnz);CHKERRQ(ierr);
3010725b52f3SLisandro Dalcin 
3011725b52f3SLisandro Dalcin   values = (PetscScalar*)V;
3012725b52f3SLisandro Dalcin   if (!values) {
3013725b52f3SLisandro Dalcin     ierr = PetscMalloc(bs*bs*(nz_max+1)*sizeof(PetscScalar),&values);CHKERRQ(ierr);
3014725b52f3SLisandro Dalcin     ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr);
3015725b52f3SLisandro Dalcin   }
3016725b52f3SLisandro Dalcin   for (i=0; i<m; i++) {
3017cf12db73SBarry Smith     PetscInt          ncols  = ii[i+1] - ii[i];
3018cf12db73SBarry Smith     const PetscInt    *icols = jj + ii[i];
3019cf12db73SBarry Smith     const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0);
3020725b52f3SLisandro Dalcin     ierr = MatSetValuesBlocked_SeqBAIJ(B,1,&i,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr);
3021725b52f3SLisandro Dalcin   }
3022725b52f3SLisandro Dalcin   if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); }
3023725b52f3SLisandro Dalcin   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
3024725b52f3SLisandro Dalcin   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
3025725b52f3SLisandro Dalcin 
3026725b52f3SLisandro Dalcin   PetscFunctionReturn(0);
3027725b52f3SLisandro Dalcin }
3028725b52f3SLisandro Dalcin EXTERN_C_END
3029725b52f3SLisandro Dalcin 
3030725b52f3SLisandro Dalcin 
3031207126cbSBarry Smith EXTERN_C_BEGIN
3032b24902e0SBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactor_seqbaij_petsc(Mat,MatFactorType,Mat*);
3033db4efbfdSBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactorAvailable_seqbaij_petsc(Mat,MatFactorType,Mat*);
3034b24902e0SBarry Smith EXTERN_C_END
3035b24902e0SBarry Smith 
30360bad9183SKris Buschelman /*MC
3037fafad747SKris Buschelman    MATSEQBAIJ - MATSEQBAIJ = "seqbaij" - A matrix type to be used for sequential block sparse matrices, based on
30380bad9183SKris Buschelman    block sparse compressed row format.
30390bad9183SKris Buschelman 
30400bad9183SKris Buschelman    Options Database Keys:
30410bad9183SKris Buschelman . -mat_type seqbaij - sets the matrix type to "seqbaij" during a call to MatSetFromOptions()
30420bad9183SKris Buschelman 
30430bad9183SKris Buschelman   Level: beginner
30440bad9183SKris Buschelman 
3045f0c06035SSatish Balay .seealso: MatCreateSeqBAIJ()
30460bad9183SKris Buschelman M*/
30470bad9183SKris Buschelman 
3048b24902e0SBarry Smith 
3049a23d5eceSKris Buschelman EXTERN_C_BEGIN
3050a23d5eceSKris Buschelman #undef __FUNCT__
30514a2ae208SSatish Balay #define __FUNCT__ "MatCreate_SeqBAIJ"
3052be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SeqBAIJ(Mat B)
30532593348eSBarry Smith {
3054dfbe8321SBarry Smith   PetscErrorCode ierr;
3055c1ac3661SBarry Smith   PetscMPIInt    size;
3056b6490206SBarry Smith   Mat_SeqBAIJ    *b;
30573b2fbd54SBarry Smith 
30583a40ed3dSBarry Smith   PetscFunctionBegin;
30597adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)B)->comm,&size);CHKERRQ(ierr);
306029bbc08cSBarry Smith   if (size > 1) SETERRQ(PETSC_ERR_ARG_WRONG,"Comm must be of size 1");
3061b6490206SBarry Smith 
306238f2d2fdSLisandro Dalcin   ierr    = PetscNewLog(B,Mat_SeqBAIJ,&b);CHKERRQ(ierr);
3063b0a32e0cSBarry Smith   B->data = (void*)b;
3064549d3d68SSatish Balay   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
306590f02eecSBarry Smith   B->mapping               = 0;
30662593348eSBarry Smith   b->row                   = 0;
30672593348eSBarry Smith   b->col                   = 0;
3068e51c0b9cSSatish Balay   b->icol                  = 0;
30692593348eSBarry Smith   b->reallocs              = 0;
30703e90b805SBarry Smith   b->saved_values          = 0;
30712593348eSBarry Smith 
3072c4992f7dSBarry Smith   b->roworiented           = PETSC_TRUE;
30732593348eSBarry Smith   b->nonew                 = 0;
30742593348eSBarry Smith   b->diag                  = 0;
30752593348eSBarry Smith   b->solve_work            = 0;
3076de6a44a3SBarry Smith   b->mult_work             = 0;
30772a1b7f2aSHong Zhang   B->spptr                 = 0;
30780e6d2581SBarry Smith   B->info.nz_unneeded      = (PetscReal)b->maxnz;
3079a9817697SBarry Smith   b->keepnonzeropattern    = PETSC_FALSE;
3080c4319e64SHong Zhang   b->xtoy                  = 0;
3081c4319e64SHong Zhang   b->XtoY                  = 0;
308273e7a558SHong Zhang   b->compressedrow.use     = PETSC_FALSE;
308326e093fcSHong Zhang   b->compressedrow.nrows   = 0;
308473e7a558SHong Zhang   b->compressedrow.i       = PETSC_NULL;
308573e7a558SHong Zhang   b->compressedrow.rindex  = PETSC_NULL;
308673e7a558SHong Zhang   b->compressedrow.checked = PETSC_FALSE;
308788e51ccdSHong Zhang   B->same_nonzero          = PETSC_FALSE;
30884e220ebcSLois Curfman McInnes 
3089db4efbfdSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactorAvailable_seqbaij_petsc_C",
3090db4efbfdSBarry Smith                                      "MatGetFactorAvailable_seqbaij_petsc",
3091db4efbfdSBarry Smith                                      MatGetFactorAvailable_seqbaij_petsc);CHKERRQ(ierr);
3092b24902e0SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_seqbaij_petsc_C",
3093b24902e0SBarry Smith                                      "MatGetFactor_seqbaij_petsc",
3094b24902e0SBarry Smith                                      MatGetFactor_seqbaij_petsc);CHKERRQ(ierr);
309543516a2dSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSeqBAIJInvertBlockDiagonal_C",
309643516a2dSKris Buschelman                                      "MatInvertBlockDiagonal_SeqBAIJ",
309743516a2dSKris Buschelman                                       MatInvertBlockDiagonal_SeqBAIJ);CHKERRQ(ierr);
3098f1af5d2fSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
30993e90b805SBarry Smith                                      "MatStoreValues_SeqBAIJ",
3100bc4b532fSSatish Balay                                       MatStoreValues_SeqBAIJ);CHKERRQ(ierr);
3101f1af5d2fSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
31023e90b805SBarry Smith                                      "MatRetrieveValues_SeqBAIJ",
3103bc4b532fSSatish Balay                                       MatRetrieveValues_SeqBAIJ);CHKERRQ(ierr);
3104f1af5d2fSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSeqBAIJSetColumnIndices_C",
310527a8da17SBarry Smith                                      "MatSeqBAIJSetColumnIndices_SeqBAIJ",
3106bc4b532fSSatish Balay                                       MatSeqBAIJSetColumnIndices_SeqBAIJ);CHKERRQ(ierr);
3107a6175056SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_seqbaij_seqaij_C",
3108273d9f13SBarry Smith                                      "MatConvert_SeqBAIJ_SeqAIJ",
3109273d9f13SBarry Smith                                       MatConvert_SeqBAIJ_SeqAIJ);CHKERRQ(ierr);
3110a0e1a404SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_seqbaij_seqsbaij_C",
3111a0e1a404SHong Zhang                                      "MatConvert_SeqBAIJ_SeqSBAIJ",
3112a0e1a404SHong Zhang                                       MatConvert_SeqBAIJ_SeqSBAIJ);CHKERRQ(ierr);
3113a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSeqBAIJSetPreallocation_C",
3114a23d5eceSKris Buschelman                                      "MatSeqBAIJSetPreallocation_SeqBAIJ",
3115a23d5eceSKris Buschelman                                       MatSeqBAIJSetPreallocation_SeqBAIJ);CHKERRQ(ierr);
3116725b52f3SLisandro Dalcin   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSeqBAIJSetPreallocationCSR_C",
3117725b52f3SLisandro Dalcin                                      "MatSeqBAIJSetPreallocationCSR_SeqBAIJ",
3118725b52f3SLisandro Dalcin                                       MatSeqBAIJSetPreallocationCSR_SeqBAIJ);CHKERRQ(ierr);
311917667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATSEQBAIJ);CHKERRQ(ierr);
31203a40ed3dSBarry Smith   PetscFunctionReturn(0);
31212593348eSBarry Smith }
3122273d9f13SBarry Smith EXTERN_C_END
31232593348eSBarry Smith 
31244a2ae208SSatish Balay #undef __FUNCT__
3125b24902e0SBarry Smith #define __FUNCT__ "MatDuplicateNoCreate_SeqBAIJ"
3126719d5645SBarry Smith PetscErrorCode MatDuplicateNoCreate_SeqBAIJ(Mat C,Mat A,MatDuplicateOption cpvalues)
31272593348eSBarry Smith {
3128b24902e0SBarry Smith   Mat_SeqBAIJ    *c = (Mat_SeqBAIJ*)C->data,*a = (Mat_SeqBAIJ*)A->data;
31296849ba73SBarry Smith   PetscErrorCode ierr;
3130a96a251dSBarry Smith   PetscInt       i,mbs = a->mbs,nz = a->nz,bs2 = a->bs2;
3131de6a44a3SBarry Smith 
31323a40ed3dSBarry Smith   PetscFunctionBegin;
313329bbc08cSBarry Smith   if (a->i[mbs] != nz) SETERRQ(PETSC_ERR_PLIB,"Corrupt matrix");
31342593348eSBarry Smith 
313533b91e9fSSatish Balay   ierr = PetscMalloc2(mbs,PetscInt,&c->imax,mbs,PetscInt,&c->ilen);CHKERRQ(ierr);
3136b6490206SBarry Smith   for (i=0; i<mbs; i++) {
31372593348eSBarry Smith     c->imax[i] = a->imax[i];
31382593348eSBarry Smith     c->ilen[i] = a->ilen[i];
31392593348eSBarry Smith   }
31402593348eSBarry Smith 
31412593348eSBarry Smith   /* allocate the matrix space */
3142a96a251dSBarry Smith   ierr = PetscMalloc3(bs2*nz,PetscScalar,&c->a,nz,PetscInt,&c->j,mbs+1,PetscInt,&c->i);CHKERRQ(ierr);
3143c4992f7dSBarry Smith   c->singlemalloc = PETSC_TRUE;
3144c1ac3661SBarry Smith   ierr = PetscMemcpy(c->i,a->i,(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr);
3145b6490206SBarry Smith   if (mbs > 0) {
3146c1ac3661SBarry Smith     ierr = PetscMemcpy(c->j,a->j,nz*sizeof(PetscInt));CHKERRQ(ierr);
31472e8a6d31SBarry Smith     if (cpvalues == MAT_COPY_VALUES) {
3148549d3d68SSatish Balay       ierr = PetscMemcpy(c->a,a->a,bs2*nz*sizeof(MatScalar));CHKERRQ(ierr);
31492e8a6d31SBarry Smith     } else {
3150549d3d68SSatish Balay       ierr = PetscMemzero(c->a,bs2*nz*sizeof(MatScalar));CHKERRQ(ierr);
31512593348eSBarry Smith     }
31522593348eSBarry Smith   }
31532593348eSBarry Smith   c->roworiented = a->roworiented;
31542593348eSBarry Smith   c->nonew       = a->nonew;
3155d0f46423SBarry Smith   ierr = PetscMapCopy(((PetscObject)A)->comm,A->rmap,C->rmap);CHKERRQ(ierr);
3156d0f46423SBarry Smith   ierr = PetscMapCopy(((PetscObject)A)->comm,A->cmap,C->cmap);CHKERRQ(ierr);
31575c9eb25fSBarry Smith   c->bs2         = a->bs2;
31585c9eb25fSBarry Smith   c->mbs         = a->mbs;
31595c9eb25fSBarry Smith   c->nbs         = a->nbs;
31602593348eSBarry Smith 
31612593348eSBarry Smith   if (a->diag) {
3162c1ac3661SBarry Smith     ierr = PetscMalloc((mbs+1)*sizeof(PetscInt),&c->diag);CHKERRQ(ierr);
316352e6d16bSBarry Smith     ierr = PetscLogObjectMemory(C,(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr);
3164b6490206SBarry Smith     for (i=0; i<mbs; i++) {
31652593348eSBarry Smith       c->diag[i] = a->diag[i];
31662593348eSBarry Smith     }
316798305bb5SBarry Smith   } else c->diag        = 0;
31682593348eSBarry Smith   c->nz                 = a->nz;
31692593348eSBarry Smith   c->maxnz              = a->maxnz;
31702593348eSBarry Smith   c->solve_work         = 0;
31717fc0212eSBarry Smith   c->mult_work          = 0;
3172e6b907acSBarry Smith   c->free_a             = PETSC_TRUE;
3173e6b907acSBarry Smith   c->free_ij            = PETSC_TRUE;
3174273d9f13SBarry Smith   C->preallocated       = PETSC_TRUE;
3175273d9f13SBarry Smith   C->assembled          = PETSC_TRUE;
317688e51ccdSHong Zhang 
317788e51ccdSHong Zhang   c->compressedrow.use     = a->compressedrow.use;
317888e51ccdSHong Zhang   c->compressedrow.nrows   = a->compressedrow.nrows;
317988e51ccdSHong Zhang   c->compressedrow.checked = a->compressedrow.checked;
318088e51ccdSHong Zhang   if ( a->compressedrow.checked && a->compressedrow.use){
318188e51ccdSHong Zhang     i = a->compressedrow.nrows;
318288e51ccdSHong Zhang     ierr = PetscMalloc((2*i+1)*sizeof(PetscInt),&c->compressedrow.i);CHKERRQ(ierr);
318388e51ccdSHong Zhang     c->compressedrow.rindex = c->compressedrow.i + i + 1;
318488e51ccdSHong Zhang     ierr = PetscMemcpy(c->compressedrow.i,a->compressedrow.i,(i+1)*sizeof(PetscInt));CHKERRQ(ierr);
318588e51ccdSHong Zhang     ierr = PetscMemcpy(c->compressedrow.rindex,a->compressedrow.rindex,i*sizeof(PetscInt));CHKERRQ(ierr);
318688e51ccdSHong Zhang   } else {
318788e51ccdSHong Zhang     c->compressedrow.use    = PETSC_FALSE;
318888e51ccdSHong Zhang     c->compressedrow.i      = PETSC_NULL;
318988e51ccdSHong Zhang     c->compressedrow.rindex = PETSC_NULL;
319088e51ccdSHong Zhang   }
319188e51ccdSHong Zhang   C->same_nonzero = A->same_nonzero;
31927adad957SLisandro Dalcin   ierr = PetscFListDuplicate(((PetscObject)A)->qlist,&((PetscObject)C)->qlist);CHKERRQ(ierr);
31933a40ed3dSBarry Smith   PetscFunctionReturn(0);
31942593348eSBarry Smith }
31952593348eSBarry Smith 
31964a2ae208SSatish Balay #undef __FUNCT__
3197b24902e0SBarry Smith #define __FUNCT__ "MatDuplicate_SeqBAIJ"
3198b24902e0SBarry Smith PetscErrorCode MatDuplicate_SeqBAIJ(Mat A,MatDuplicateOption cpvalues,Mat *B)
3199b24902e0SBarry Smith {
3200b24902e0SBarry Smith     PetscErrorCode ierr;
3201b24902e0SBarry Smith 
3202b24902e0SBarry Smith   PetscFunctionBegin;
32035c9eb25fSBarry Smith   ierr = MatCreate(((PetscObject)A)->comm,B);CHKERRQ(ierr);
3204d0f46423SBarry Smith   ierr = MatSetSizes(*B,A->rmap->N,A->cmap->n,A->rmap->N,A->cmap->n);CHKERRQ(ierr);
32055c9eb25fSBarry Smith   ierr = MatSetType(*B,MATSEQBAIJ);CHKERRQ(ierr);
3206719d5645SBarry Smith   ierr = MatDuplicateNoCreate_SeqBAIJ(*B,A,cpvalues);
3207b24902e0SBarry Smith   PetscFunctionReturn(0);
3208b24902e0SBarry Smith }
3209b24902e0SBarry Smith 
3210b24902e0SBarry Smith #undef __FUNCT__
32114a2ae208SSatish Balay #define __FUNCT__ "MatLoad_SeqBAIJ"
3212a313700dSBarry Smith PetscErrorCode MatLoad_SeqBAIJ(PetscViewer viewer, const MatType type,Mat *A)
32132593348eSBarry Smith {
3214b6490206SBarry Smith   Mat_SeqBAIJ    *a;
32152593348eSBarry Smith   Mat            B;
32166849ba73SBarry Smith   PetscErrorCode ierr;
3217b24ad042SBarry Smith   PetscInt       i,nz,header[4],*rowlengths=0,M,N,bs=1;
3218c1ac3661SBarry Smith   PetscInt       *mask,mbs,*jj,j,rowcount,nzcount,k,*browlengths,maskcount;
3219c1ac3661SBarry Smith   PetscInt       kmax,jcount,block,idx,point,nzcountb,extra_rows;
3220c1ac3661SBarry Smith   PetscInt       *masked,nmask,tmp,bs2,ishift;
3221b24ad042SBarry Smith   PetscMPIInt    size;
3222b24ad042SBarry Smith   int            fd;
322387828ca2SBarry Smith   PetscScalar    *aa;
322419bcc07fSBarry Smith   MPI_Comm       comm = ((PetscObject)viewer)->comm;
32252593348eSBarry Smith 
32263a40ed3dSBarry Smith   PetscFunctionBegin;
32278c07d4e3SBarry Smith   ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading SEQBAIJ matrix","Mat");CHKERRQ(ierr);
32288c07d4e3SBarry Smith     ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr);
32298c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
3230de6a44a3SBarry Smith   bs2  = bs*bs;
3231b6490206SBarry Smith 
3232d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
323329bbc08cSBarry Smith   if (size > 1) SETERRQ(PETSC_ERR_ARG_WRONG,"view must have one processor");
3234b0a32e0cSBarry Smith   ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
32350752156aSBarry Smith   ierr = PetscBinaryRead(fd,header,4,PETSC_INT);CHKERRQ(ierr);
3236552e946dSBarry Smith   if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not Mat object");
32372593348eSBarry Smith   M = header[1]; N = header[2]; nz = header[3];
32382593348eSBarry Smith 
3239d64ed03dSBarry Smith   if (header[3] < 0) {
324029bbc08cSBarry Smith     SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as SeqBAIJ");
3241d64ed03dSBarry Smith   }
3242d64ed03dSBarry Smith 
324329bbc08cSBarry Smith   if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices");
324435aab85fSBarry Smith 
324535aab85fSBarry Smith   /*
324635aab85fSBarry Smith      This code adds extra rows to make sure the number of rows is
324735aab85fSBarry Smith     divisible by the blocksize
324835aab85fSBarry Smith   */
3249b6490206SBarry Smith   mbs        = M/bs;
325035aab85fSBarry Smith   extra_rows = bs - M + bs*(mbs);
325135aab85fSBarry Smith   if (extra_rows == bs) extra_rows = 0;
325235aab85fSBarry Smith   else                  mbs++;
325335aab85fSBarry Smith   if (extra_rows) {
32541e2582c4SBarry Smith     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
325535aab85fSBarry Smith   }
3256b6490206SBarry Smith 
32572593348eSBarry Smith   /* read in row lengths */
3258c1ac3661SBarry Smith   ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
32590752156aSBarry Smith   ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
326035aab85fSBarry Smith   for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
32612593348eSBarry Smith 
3262b6490206SBarry Smith   /* read in column indices */
3263c1ac3661SBarry Smith   ierr = PetscMalloc((nz+extra_rows)*sizeof(PetscInt),&jj);CHKERRQ(ierr);
32640752156aSBarry Smith   ierr = PetscBinaryRead(fd,jj,nz,PETSC_INT);CHKERRQ(ierr);
326535aab85fSBarry Smith   for (i=0; i<extra_rows; i++) jj[nz+i] = M+i;
3266b6490206SBarry Smith 
3267b6490206SBarry Smith   /* loop over row lengths determining block row lengths */
3268c1ac3661SBarry Smith   ierr     = PetscMalloc(mbs*sizeof(PetscInt),&browlengths);CHKERRQ(ierr);
3269c1ac3661SBarry Smith   ierr     = PetscMemzero(browlengths,mbs*sizeof(PetscInt));CHKERRQ(ierr);
3270c1ac3661SBarry Smith   ierr     = PetscMalloc(2*mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr);
3271c1ac3661SBarry Smith   ierr     = PetscMemzero(mask,mbs*sizeof(PetscInt));CHKERRQ(ierr);
327235aab85fSBarry Smith   masked   = mask + mbs;
3273b6490206SBarry Smith   rowcount = 0; nzcount = 0;
3274b6490206SBarry Smith   for (i=0; i<mbs; i++) {
327535aab85fSBarry Smith     nmask = 0;
3276b6490206SBarry Smith     for (j=0; j<bs; j++) {
3277b6490206SBarry Smith       kmax = rowlengths[rowcount];
3278b6490206SBarry Smith       for (k=0; k<kmax; k++) {
327935aab85fSBarry Smith         tmp = jj[nzcount++]/bs;
328035aab85fSBarry Smith         if (!mask[tmp]) {masked[nmask++] = tmp; mask[tmp] = 1;}
3281b6490206SBarry Smith       }
3282b6490206SBarry Smith       rowcount++;
3283b6490206SBarry Smith     }
328435aab85fSBarry Smith     browlengths[i] += nmask;
328535aab85fSBarry Smith     /* zero out the mask elements we set */
328635aab85fSBarry Smith     for (j=0; j<nmask; j++) mask[masked[j]] = 0;
3287b6490206SBarry Smith   }
3288b6490206SBarry Smith 
32892593348eSBarry Smith   /* create our matrix */
3290f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,&B);
3291f69a0ea3SMatthew Knepley   ierr = MatSetSizes(B,PETSC_DECIDE,PETSC_DECIDE,M+extra_rows,N+extra_rows);
329278ae41b4SKris Buschelman   ierr = MatSetType(B,type);CHKERRQ(ierr);
3293ab93d7beSBarry Smith   ierr = MatSeqBAIJSetPreallocation_SeqBAIJ(B,bs,0,browlengths);CHKERRQ(ierr);
3294b6490206SBarry Smith   a = (Mat_SeqBAIJ*)B->data;
32952593348eSBarry Smith 
32962593348eSBarry Smith   /* set matrix "i" values */
3297de6a44a3SBarry Smith   a->i[0] = 0;
3298b6490206SBarry Smith   for (i=1; i<= mbs; i++) {
3299b6490206SBarry Smith     a->i[i]      = a->i[i-1] + browlengths[i-1];
3300b6490206SBarry Smith     a->ilen[i-1] = browlengths[i-1];
33012593348eSBarry Smith   }
3302b6490206SBarry Smith   a->nz         = 0;
3303b6490206SBarry Smith   for (i=0; i<mbs; i++) a->nz += browlengths[i];
33042593348eSBarry Smith 
3305b6490206SBarry Smith   /* read in nonzero values */
330687828ca2SBarry Smith   ierr = PetscMalloc((nz+extra_rows)*sizeof(PetscScalar),&aa);CHKERRQ(ierr);
33070752156aSBarry Smith   ierr = PetscBinaryRead(fd,aa,nz,PETSC_SCALAR);CHKERRQ(ierr);
330835aab85fSBarry Smith   for (i=0; i<extra_rows; i++) aa[nz+i] = 1.0;
3309b6490206SBarry Smith 
3310b6490206SBarry Smith   /* set "a" and "j" values into matrix */
3311b6490206SBarry Smith   nzcount = 0; jcount = 0;
3312b6490206SBarry Smith   for (i=0; i<mbs; i++) {
3313b6490206SBarry Smith     nzcountb = nzcount;
331435aab85fSBarry Smith     nmask    = 0;
3315b6490206SBarry Smith     for (j=0; j<bs; j++) {
3316b6490206SBarry Smith       kmax = rowlengths[i*bs+j];
3317b6490206SBarry Smith       for (k=0; k<kmax; k++) {
331835aab85fSBarry Smith         tmp = jj[nzcount++]/bs;
331935aab85fSBarry Smith 	if (!mask[tmp]) { masked[nmask++] = tmp; mask[tmp] = 1;}
3320b6490206SBarry Smith       }
3321b6490206SBarry Smith     }
3322de6a44a3SBarry Smith     /* sort the masked values */
3323433994e6SBarry Smith     ierr = PetscSortInt(nmask,masked);CHKERRQ(ierr);
3324de6a44a3SBarry Smith 
3325b6490206SBarry Smith     /* set "j" values into matrix */
3326b6490206SBarry Smith     maskcount = 1;
332735aab85fSBarry Smith     for (j=0; j<nmask; j++) {
332835aab85fSBarry Smith       a->j[jcount++]  = masked[j];
3329de6a44a3SBarry Smith       mask[masked[j]] = maskcount++;
3330b6490206SBarry Smith     }
3331b6490206SBarry Smith     /* set "a" values into matrix */
3332de6a44a3SBarry Smith     ishift = bs2*a->i[i];
3333b6490206SBarry Smith     for (j=0; j<bs; j++) {
3334b6490206SBarry Smith       kmax = rowlengths[i*bs+j];
3335b6490206SBarry Smith       for (k=0; k<kmax; k++) {
3336de6a44a3SBarry Smith         tmp       = jj[nzcountb]/bs ;
3337de6a44a3SBarry Smith         block     = mask[tmp] - 1;
3338de6a44a3SBarry Smith         point     = jj[nzcountb] - bs*tmp;
3339de6a44a3SBarry Smith         idx       = ishift + bs2*block + j + bs*point;
3340375fe846SBarry Smith         a->a[idx] = (MatScalar)aa[nzcountb++];
3341b6490206SBarry Smith       }
3342b6490206SBarry Smith     }
334335aab85fSBarry Smith     /* zero out the mask elements we set */
334435aab85fSBarry Smith     for (j=0; j<nmask; j++) mask[masked[j]] = 0;
3345b6490206SBarry Smith   }
334629bbc08cSBarry Smith   if (jcount != a->nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Bad binary matrix");
3347b6490206SBarry Smith 
3348606d414cSSatish Balay   ierr = PetscFree(rowlengths);CHKERRQ(ierr);
3349606d414cSSatish Balay   ierr = PetscFree(browlengths);CHKERRQ(ierr);
3350606d414cSSatish Balay   ierr = PetscFree(aa);CHKERRQ(ierr);
3351606d414cSSatish Balay   ierr = PetscFree(jj);CHKERRQ(ierr);
3352606d414cSSatish Balay   ierr = PetscFree(mask);CHKERRQ(ierr);
3353b6490206SBarry Smith 
335478ae41b4SKris Buschelman   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
335578ae41b4SKris Buschelman   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
33569c01be13SBarry Smith   ierr = MatView_Private(B);CHKERRQ(ierr);
335778ae41b4SKris Buschelman 
335878ae41b4SKris Buschelman   *A = B;
33593a40ed3dSBarry Smith   PetscFunctionReturn(0);
33602593348eSBarry Smith }
33612593348eSBarry Smith 
33624a2ae208SSatish Balay #undef __FUNCT__
33634a2ae208SSatish Balay #define __FUNCT__ "MatCreateSeqBAIJ"
3364273d9f13SBarry Smith /*@C
3365273d9f13SBarry Smith    MatCreateSeqBAIJ - Creates a sparse matrix in block AIJ (block
3366273d9f13SBarry Smith    compressed row) format.  For good matrix assembly performance the
3367273d9f13SBarry Smith    user should preallocate the matrix storage by setting the parameter nz
3368273d9f13SBarry Smith    (or the array nnz).  By setting these parameters accurately, performance
3369273d9f13SBarry Smith    during matrix assembly can be increased by more than a factor of 50.
33702593348eSBarry Smith 
3371273d9f13SBarry Smith    Collective on MPI_Comm
3372273d9f13SBarry Smith 
3373273d9f13SBarry Smith    Input Parameters:
3374273d9f13SBarry Smith +  comm - MPI communicator, set to PETSC_COMM_SELF
3375273d9f13SBarry Smith .  bs - size of block
3376273d9f13SBarry Smith .  m - number of rows
3377273d9f13SBarry Smith .  n - number of columns
337835d8aa7fSBarry Smith .  nz - number of nonzero blocks  per block row (same for all rows)
337935d8aa7fSBarry Smith -  nnz - array containing the number of nonzero blocks in the various block rows
3380273d9f13SBarry Smith          (possibly different for each block row) or PETSC_NULL
3381273d9f13SBarry Smith 
3382273d9f13SBarry Smith    Output Parameter:
3383273d9f13SBarry Smith .  A - the matrix
3384273d9f13SBarry Smith 
3385175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
3386ae1d86c5SBarry Smith    MatXXXXSetPreallocation() paradgm instead of this routine directly.
3387175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
3388175b88e8SBarry Smith 
3389273d9f13SBarry Smith    Options Database Keys:
3390273d9f13SBarry Smith .   -mat_no_unroll - uses code that does not unroll the loops in the
3391273d9f13SBarry Smith                      block calculations (much slower)
3392273d9f13SBarry Smith .    -mat_block_size - size of the blocks to use
3393273d9f13SBarry Smith 
3394273d9f13SBarry Smith    Level: intermediate
3395273d9f13SBarry Smith 
3396273d9f13SBarry Smith    Notes:
3397d1be2dadSMatthew Knepley    The number of rows and columns must be divisible by blocksize.
3398d1be2dadSMatthew Knepley 
339949a6f317SBarry Smith    If the nnz parameter is given then the nz parameter is ignored
340049a6f317SBarry Smith 
340135d8aa7fSBarry Smith    A nonzero block is any block that as 1 or more nonzeros in it
340235d8aa7fSBarry Smith 
3403273d9f13SBarry Smith    The block AIJ format is fully compatible with standard Fortran 77
3404273d9f13SBarry Smith    storage.  That is, the stored row and column indices can begin at
3405273d9f13SBarry Smith    either one (as in Fortran) or zero.  See the users' manual for details.
3406273d9f13SBarry Smith 
3407273d9f13SBarry Smith    Specify the preallocated storage with either nz or nnz (not both).
3408273d9f13SBarry Smith    Set nz=PETSC_DEFAULT and nnz=PETSC_NULL for PETSc to control dynamic memory
3409273d9f13SBarry Smith    allocation.  For additional details, see the users manual chapter on
3410273d9f13SBarry Smith    matrices.
3411273d9f13SBarry Smith 
3412273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatCreateMPIBAIJ()
3413273d9f13SBarry Smith @*/
3414be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateSeqBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt nz,const PetscInt nnz[],Mat *A)
3415273d9f13SBarry Smith {
3416dfbe8321SBarry Smith   PetscErrorCode ierr;
3417273d9f13SBarry Smith 
3418273d9f13SBarry Smith   PetscFunctionBegin;
3419f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
3420f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,m,n);CHKERRQ(ierr);
3421273d9f13SBarry Smith   ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr);
3422ab93d7beSBarry Smith   ierr = MatSeqBAIJSetPreallocation_SeqBAIJ(*A,bs,nz,(PetscInt*)nnz);CHKERRQ(ierr);
3423273d9f13SBarry Smith   PetscFunctionReturn(0);
3424273d9f13SBarry Smith }
3425273d9f13SBarry Smith 
34264a2ae208SSatish Balay #undef __FUNCT__
34274a2ae208SSatish Balay #define __FUNCT__ "MatSeqBAIJSetPreallocation"
3428273d9f13SBarry Smith /*@C
3429273d9f13SBarry Smith    MatSeqBAIJSetPreallocation - Sets the block size and expected nonzeros
3430273d9f13SBarry Smith    per row in the matrix. For good matrix assembly performance the
3431273d9f13SBarry Smith    user should preallocate the matrix storage by setting the parameter nz
3432273d9f13SBarry Smith    (or the array nnz).  By setting these parameters accurately, performance
3433273d9f13SBarry Smith    during matrix assembly can be increased by more than a factor of 50.
3434273d9f13SBarry Smith 
3435273d9f13SBarry Smith    Collective on MPI_Comm
3436273d9f13SBarry Smith 
3437273d9f13SBarry Smith    Input Parameters:
3438273d9f13SBarry Smith +  A - the matrix
3439273d9f13SBarry Smith .  bs - size of block
3440273d9f13SBarry Smith .  nz - number of block nonzeros per block row (same for all rows)
3441273d9f13SBarry Smith -  nnz - array containing the number of block nonzeros in the various block rows
3442273d9f13SBarry Smith          (possibly different for each block row) or PETSC_NULL
3443273d9f13SBarry Smith 
3444273d9f13SBarry Smith    Options Database Keys:
3445273d9f13SBarry Smith .   -mat_no_unroll - uses code that does not unroll the loops in the
3446273d9f13SBarry Smith                      block calculations (much slower)
3447273d9f13SBarry Smith .    -mat_block_size - size of the blocks to use
3448273d9f13SBarry Smith 
3449273d9f13SBarry Smith    Level: intermediate
3450273d9f13SBarry Smith 
3451273d9f13SBarry Smith    Notes:
345249a6f317SBarry Smith    If the nnz parameter is given then the nz parameter is ignored
345349a6f317SBarry Smith 
3454aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
3455aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
3456aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
3457aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
3458aa95bbe8SBarry Smith 
3459273d9f13SBarry Smith    The block AIJ format is fully compatible with standard Fortran 77
3460273d9f13SBarry Smith    storage.  That is, the stored row and column indices can begin at
3461273d9f13SBarry Smith    either one (as in Fortran) or zero.  See the users' manual for details.
3462273d9f13SBarry Smith 
3463273d9f13SBarry Smith    Specify the preallocated storage with either nz or nnz (not both).
3464273d9f13SBarry Smith    Set nz=PETSC_DEFAULT and nnz=PETSC_NULL for PETSc to control dynamic memory
3465273d9f13SBarry Smith    allocation.  For additional details, see the users manual chapter on
3466273d9f13SBarry Smith    matrices.
3467273d9f13SBarry Smith 
3468aa95bbe8SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatGetInfo()
3469273d9f13SBarry Smith @*/
3470be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt nz,const PetscInt nnz[])
3471273d9f13SBarry Smith {
3472c1ac3661SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[]);
3473273d9f13SBarry Smith 
3474273d9f13SBarry Smith   PetscFunctionBegin;
3475a23d5eceSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,"MatSeqBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
3476a23d5eceSKris Buschelman   if (f) {
3477a23d5eceSKris Buschelman     ierr = (*f)(B,bs,nz,nnz);CHKERRQ(ierr);
3478273d9f13SBarry Smith   }
3479273d9f13SBarry Smith   PetscFunctionReturn(0);
3480273d9f13SBarry Smith }
3481a1d92eedSBarry Smith 
3482c75a6043SHong Zhang #undef __FUNCT__
3483725b52f3SLisandro Dalcin #define __FUNCT__ "MatSeqBAIJSetPreallocationCSR"
3484725b52f3SLisandro Dalcin /*@C
3485725b52f3SLisandro Dalcin    MatSeqBAIJSetPreallocationCSR - Allocates memory for a sparse sequential matrix in AIJ format
3486725b52f3SLisandro Dalcin    (the default sequential PETSc format).
3487725b52f3SLisandro Dalcin 
3488725b52f3SLisandro Dalcin    Collective on MPI_Comm
3489725b52f3SLisandro Dalcin 
3490725b52f3SLisandro Dalcin    Input Parameters:
3491725b52f3SLisandro Dalcin +  A - the matrix
3492725b52f3SLisandro Dalcin .  i - the indices into j for the start of each local row (starts with zero)
3493725b52f3SLisandro Dalcin .  j - the column indices for each local row (starts with zero) these must be sorted for each row
3494725b52f3SLisandro Dalcin -  v - optional values in the matrix
3495725b52f3SLisandro Dalcin 
3496725b52f3SLisandro Dalcin    Level: developer
3497725b52f3SLisandro Dalcin 
3498725b52f3SLisandro Dalcin .keywords: matrix, aij, compressed row, sparse
3499725b52f3SLisandro Dalcin 
3500725b52f3SLisandro Dalcin .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatSeqBAIJSetPreallocation(), MATSEQBAIJ
3501725b52f3SLisandro Dalcin @*/
3502725b52f3SLisandro Dalcin PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
3503725b52f3SLisandro Dalcin {
3504725b52f3SLisandro Dalcin   PetscErrorCode ierr,(*f)(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]);
3505725b52f3SLisandro Dalcin 
3506725b52f3SLisandro Dalcin   PetscFunctionBegin;
3507725b52f3SLisandro Dalcin   ierr = PetscObjectQueryFunction((PetscObject)B,"MatSeqBAIJSetPreallocationCSR_C",(void (**)(void))&f);CHKERRQ(ierr);
3508725b52f3SLisandro Dalcin   if (f) {
3509725b52f3SLisandro Dalcin     ierr = (*f)(B,bs,i,j,v);CHKERRQ(ierr);
3510725b52f3SLisandro Dalcin   }
3511725b52f3SLisandro Dalcin   PetscFunctionReturn(0);
3512725b52f3SLisandro Dalcin }
3513725b52f3SLisandro Dalcin 
3514725b52f3SLisandro Dalcin 
3515725b52f3SLisandro Dalcin #undef __FUNCT__
3516c75a6043SHong Zhang #define __FUNCT__ "MatCreateSeqBAIJWithArrays"
3517c75a6043SHong Zhang /*@
3518c75a6043SHong Zhang      MatCreateSeqBAIJWithArrays - Creates an sequential BAIJ matrix using matrix elements
3519c75a6043SHong Zhang               (upper triangular entries in CSR format) provided by the user.
3520c75a6043SHong Zhang 
3521c75a6043SHong Zhang      Collective on MPI_Comm
3522c75a6043SHong Zhang 
3523c75a6043SHong Zhang    Input Parameters:
3524c75a6043SHong Zhang +  comm - must be an MPI communicator of size 1
3525c75a6043SHong Zhang .  bs - size of block
3526c75a6043SHong Zhang .  m - number of rows
3527c75a6043SHong Zhang .  n - number of columns
3528c75a6043SHong Zhang .  i - row indices
3529c75a6043SHong Zhang .  j - column indices
3530c75a6043SHong Zhang -  a - matrix values
3531c75a6043SHong Zhang 
3532c75a6043SHong Zhang    Output Parameter:
3533c75a6043SHong Zhang .  mat - the matrix
3534c75a6043SHong Zhang 
3535c75a6043SHong Zhang    Level: intermediate
3536c75a6043SHong Zhang 
3537c75a6043SHong Zhang    Notes:
3538c75a6043SHong Zhang        The i, j, and a arrays are not copied by this routine, the user must free these arrays
3539c75a6043SHong Zhang     once the matrix is destroyed
3540c75a6043SHong Zhang 
3541c75a6043SHong Zhang        You cannot set new nonzero locations into this matrix, that will generate an error.
3542c75a6043SHong Zhang 
3543c75a6043SHong Zhang        The i and j indices are 0 based
3544c75a6043SHong Zhang 
3545c75a6043SHong Zhang .seealso: MatCreate(), MatCreateMPIBAIJ(), MatCreateSeqBAIJ()
3546c75a6043SHong Zhang 
3547c75a6043SHong Zhang @*/
3548c75a6043SHong Zhang PetscErrorCode PETSCMAT_DLLEXPORT MatCreateSeqBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt* i,PetscInt*j,PetscScalar *a,Mat *mat)
3549c75a6043SHong Zhang {
3550c75a6043SHong Zhang   PetscErrorCode ierr;
3551c75a6043SHong Zhang   PetscInt       ii;
3552c75a6043SHong Zhang   Mat_SeqBAIJ    *baij;
3553c75a6043SHong Zhang 
3554c75a6043SHong Zhang   PetscFunctionBegin;
3555c75a6043SHong Zhang   if (bs != 1) SETERRQ1(PETSC_ERR_SUP,"block size %D > 1 is not supported yet",bs);
3556c75a6043SHong Zhang   if (i[0]) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0");
3557c75a6043SHong Zhang 
3558c75a6043SHong Zhang   ierr = MatCreate(comm,mat);CHKERRQ(ierr);
3559c75a6043SHong Zhang   ierr = MatSetSizes(*mat,m,n,m,n);CHKERRQ(ierr);
3560c75a6043SHong Zhang   ierr = MatSetType(*mat,MATSEQBAIJ);CHKERRQ(ierr);
3561c75a6043SHong Zhang   ierr = MatSeqBAIJSetPreallocation_SeqBAIJ(*mat,bs,MAT_SKIP_ALLOCATION,0);CHKERRQ(ierr);
3562c75a6043SHong Zhang   baij = (Mat_SeqBAIJ*)(*mat)->data;
3563c75a6043SHong Zhang   ierr = PetscMalloc2(m,PetscInt,&baij->imax,m,PetscInt,&baij->ilen);CHKERRQ(ierr);
3564c75a6043SHong Zhang 
3565c75a6043SHong Zhang   baij->i = i;
3566c75a6043SHong Zhang   baij->j = j;
3567c75a6043SHong Zhang   baij->a = a;
3568c75a6043SHong Zhang   baij->singlemalloc = PETSC_FALSE;
3569c75a6043SHong Zhang   baij->nonew        = -1;             /*this indicates that inserting a new value in the matrix that generates a new nonzero is an error*/
3570e6b907acSBarry Smith   baij->free_a       = PETSC_FALSE;
3571e6b907acSBarry Smith   baij->free_ij       = PETSC_FALSE;
3572c75a6043SHong Zhang 
3573c75a6043SHong Zhang   for (ii=0; ii<m; ii++) {
3574c75a6043SHong Zhang     baij->ilen[ii] = baij->imax[ii] = i[ii+1] - i[ii];
3575c75a6043SHong Zhang #if defined(PETSC_USE_DEBUG)
3576c75a6043SHong Zhang     if (i[ii+1] - i[ii] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Negative row length in i (row indices) row = %d length = %d",ii,i[ii+1] - i[ii]);
3577c75a6043SHong Zhang #endif
3578c75a6043SHong Zhang   }
3579c75a6043SHong Zhang #if defined(PETSC_USE_DEBUG)
3580c75a6043SHong Zhang   for (ii=0; ii<baij->i[m]; ii++) {
3581c75a6043SHong Zhang     if (j[ii] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Negative column index at location = %d index = %d",ii,j[ii]);
3582c75a6043SHong Zhang     if (j[ii] > n - 1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column index to large at location = %d index = %d",ii,j[ii]);
3583c75a6043SHong Zhang   }
3584c75a6043SHong Zhang #endif
3585c75a6043SHong Zhang 
3586c75a6043SHong Zhang   ierr = MatAssemblyBegin(*mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
3587c75a6043SHong Zhang   ierr = MatAssemblyEnd(*mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
3588c75a6043SHong Zhang   PetscFunctionReturn(0);
3589c75a6043SHong Zhang }
3590