1be1d678aSKris Buschelman #define PETSCMAT_DLL 2be1d678aSKris Buschelman 32593348eSBarry Smith /* 4b6490206SBarry Smith Defines the basic matrix operations for the BAIJ (compressed row) 52593348eSBarry Smith matrix storage format. 62593348eSBarry Smith */ 770f55243SBarry Smith #include "src/mat/impls/baij/seq/baij.h" 81a6a6d98SBarry Smith #include "src/inline/spops.h" 9325e03aeSBarry Smith #include "petscsys.h" /*I "petscmat.h" I*/ 103b547af2SSatish Balay 11b01c7715SBarry Smith #include "src/inline/ilu.h" 12b01c7715SBarry Smith 13b01c7715SBarry Smith #undef __FUNCT__ 1443516a2dSKris Buschelman #define __FUNCT__ "MatSeqBAIJInvertBlockDiagonal" 15bc08b0f1SBarry Smith /*@ 1643516a2dSKris Buschelman MatSeqBAIJInvertBlockDiagonal - Inverts the block diagonal entries. 1743516a2dSKris Buschelman 1843516a2dSKris Buschelman Collective on Mat 1943516a2dSKris Buschelman 2043516a2dSKris Buschelman Input Parameters: 2143516a2dSKris Buschelman . mat - the matrix 2243516a2dSKris Buschelman 2343516a2dSKris Buschelman Level: advanced 2443516a2dSKris Buschelman @*/ 2546129b97SKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJInvertBlockDiagonal(Mat mat) 2643516a2dSKris Buschelman { 2743516a2dSKris Buschelman PetscErrorCode ierr,(*f)(Mat); 2843516a2dSKris Buschelman 2943516a2dSKris Buschelman PetscFunctionBegin; 3043516a2dSKris Buschelman PetscValidHeaderSpecific(mat,MAT_COOKIE,1); 3143516a2dSKris Buschelman if (!mat->assembled) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for unassembled matrix"); 3243516a2dSKris Buschelman if (mat->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 3343516a2dSKris Buschelman 3443516a2dSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)mat,"MatSeqBAIJInvertBlockDiagonal_C",(void (**)(void))&f);CHKERRQ(ierr); 3543516a2dSKris Buschelman if (f) { 3643516a2dSKris Buschelman ierr = (*f)(mat);CHKERRQ(ierr); 3743516a2dSKris Buschelman } else { 3843516a2dSKris Buschelman SETERRQ(PETSC_ERR_SUP,"Currently only implemented for SeqBAIJ."); 3943516a2dSKris Buschelman } 4043516a2dSKris Buschelman PetscFunctionReturn(0); 4143516a2dSKris Buschelman } 4243516a2dSKris Buschelman 4343516a2dSKris Buschelman EXTERN_C_BEGIN 4443516a2dSKris Buschelman #undef __FUNCT__ 45b01c7715SBarry Smith #define __FUNCT__ "MatInvertBlockDiagonal_SeqBAIJ" 4646129b97SKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatInvertBlockDiagonal_SeqBAIJ(Mat A) 47b01c7715SBarry Smith { 48b01c7715SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*) A->data; 496849ba73SBarry Smith PetscErrorCode ierr; 50899cda47SBarry Smith PetscInt *diag_offset,i,bs = A->rmap.bs,mbs = a->mbs; 5197e5c40aSBarry Smith MatScalar *v = a->a,*odiag,*diag,*mdiag; 5262bba022SBarry Smith PetscReal shift = 0.0; 53b01c7715SBarry Smith 54b01c7715SBarry Smith PetscFunctionBegin; 55b01c7715SBarry Smith if (a->idiagvalid) PetscFunctionReturn(0); 56b01c7715SBarry Smith ierr = MatMarkDiagonal_SeqBAIJ(A);CHKERRQ(ierr); 57b01c7715SBarry Smith diag_offset = a->diag; 58b01c7715SBarry Smith if (!a->idiag) { 59b01c7715SBarry Smith ierr = PetscMalloc(2*bs*bs*mbs*sizeof(PetscScalar),&a->idiag);CHKERRQ(ierr); 60b01c7715SBarry Smith } 61b01c7715SBarry Smith diag = a->idiag; 62b01c7715SBarry Smith mdiag = a->idiag+bs*bs*mbs; 63b01c7715SBarry Smith /* factor and invert each block */ 64521d7252SBarry Smith switch (bs){ 65b01c7715SBarry Smith case 2: 66b01c7715SBarry Smith for (i=0; i<mbs; i++) { 67b01c7715SBarry Smith odiag = v + 4*diag_offset[i]; 68b01c7715SBarry Smith diag[0] = odiag[0]; diag[1] = odiag[1]; diag[2] = odiag[2]; diag[3] = odiag[3]; 69b01c7715SBarry Smith mdiag[0] = odiag[0]; mdiag[1] = odiag[1]; mdiag[2] = odiag[2]; mdiag[3] = odiag[3]; 7062bba022SBarry Smith ierr = Kernel_A_gets_inverse_A_2(diag,shift);CHKERRQ(ierr); 71b01c7715SBarry Smith diag += 4; 72b01c7715SBarry Smith mdiag += 4; 73b01c7715SBarry Smith } 74b01c7715SBarry Smith break; 75b01c7715SBarry Smith case 3: 76b01c7715SBarry Smith for (i=0; i<mbs; i++) { 77b01c7715SBarry Smith odiag = v + 9*diag_offset[i]; 78b01c7715SBarry Smith diag[0] = odiag[0]; diag[1] = odiag[1]; diag[2] = odiag[2]; diag[3] = odiag[3]; 79b01c7715SBarry Smith diag[4] = odiag[4]; diag[5] = odiag[5]; diag[6] = odiag[6]; diag[7] = odiag[7]; 80b01c7715SBarry Smith diag[8] = odiag[8]; 81b01c7715SBarry Smith mdiag[0] = odiag[0]; mdiag[1] = odiag[1]; mdiag[2] = odiag[2]; mdiag[3] = odiag[3]; 82b01c7715SBarry Smith mdiag[4] = odiag[4]; mdiag[5] = odiag[5]; mdiag[6] = odiag[6]; mdiag[7] = odiag[7]; 83b01c7715SBarry Smith mdiag[8] = odiag[8]; 8462bba022SBarry Smith ierr = Kernel_A_gets_inverse_A_3(diag,shift);CHKERRQ(ierr); 85b01c7715SBarry Smith diag += 9; 86b01c7715SBarry Smith mdiag += 9; 87b01c7715SBarry Smith } 88b01c7715SBarry Smith break; 89b01c7715SBarry Smith case 4: 90b01c7715SBarry Smith for (i=0; i<mbs; i++) { 91b01c7715SBarry Smith odiag = v + 16*diag_offset[i]; 92b01c7715SBarry Smith ierr = PetscMemcpy(diag,odiag,16*sizeof(PetscScalar));CHKERRQ(ierr); 93b01c7715SBarry Smith ierr = PetscMemcpy(mdiag,odiag,16*sizeof(PetscScalar));CHKERRQ(ierr); 9462bba022SBarry Smith ierr = Kernel_A_gets_inverse_A_4(diag,shift);CHKERRQ(ierr); 95b01c7715SBarry Smith diag += 16; 96b01c7715SBarry Smith mdiag += 16; 97b01c7715SBarry Smith } 98b01c7715SBarry Smith break; 99b01c7715SBarry Smith case 5: 100b01c7715SBarry Smith for (i=0; i<mbs; i++) { 101b01c7715SBarry Smith odiag = v + 25*diag_offset[i]; 102b01c7715SBarry Smith ierr = PetscMemcpy(diag,odiag,25*sizeof(PetscScalar));CHKERRQ(ierr); 103b01c7715SBarry Smith ierr = PetscMemcpy(mdiag,odiag,25*sizeof(PetscScalar));CHKERRQ(ierr); 10462bba022SBarry Smith ierr = Kernel_A_gets_inverse_A_5(diag,shift);CHKERRQ(ierr); 105b01c7715SBarry Smith diag += 25; 106b01c7715SBarry Smith mdiag += 25; 107b01c7715SBarry Smith } 108b01c7715SBarry Smith break; 109b01c7715SBarry Smith default: 110521d7252SBarry Smith SETERRQ1(PETSC_ERR_SUP,"not supported for block size %D",bs); 111b01c7715SBarry Smith } 112b01c7715SBarry Smith a->idiagvalid = PETSC_TRUE; 113b01c7715SBarry Smith PetscFunctionReturn(0); 114b01c7715SBarry Smith } 11543516a2dSKris Buschelman EXTERN_C_END 116b01c7715SBarry Smith 117b01c7715SBarry Smith #undef __FUNCT__ 1186d3beeddSMatthew Knepley #define __FUNCT__ "MatPBRelax_SeqBAIJ_1" 1196d3beeddSMatthew Knepley PetscErrorCode MatPBRelax_SeqBAIJ_1(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 1206d3beeddSMatthew Knepley { 1216d3beeddSMatthew Knepley Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 1226d3beeddSMatthew Knepley PetscScalar *x,x1,s1; 123dd6ea824SBarry Smith const PetscScalar *b; 124dd6ea824SBarry Smith const MatScalar *aa = a->a, *idiag,*mdiag,*v; 1256d3beeddSMatthew Knepley PetscErrorCode ierr; 1266d3beeddSMatthew Knepley PetscInt m = a->mbs,i,i2,nz,idx; 1276d3beeddSMatthew Knepley const PetscInt *diag,*ai = a->i,*aj = a->j,*vi; 1286d3beeddSMatthew Knepley 1296d3beeddSMatthew Knepley PetscFunctionBegin; 1306d3beeddSMatthew Knepley if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat"); 1316d3beeddSMatthew Knepley its = its*lits; 1326d3beeddSMatthew Knepley if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 1336d3beeddSMatthew Knepley if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift"); 1346d3beeddSMatthew Knepley if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor"); 1356d3beeddSMatthew Knepley if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts"); 1366d3beeddSMatthew Knepley if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations"); 1376d3beeddSMatthew Knepley 1386d3beeddSMatthew Knepley if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);} 1396d3beeddSMatthew Knepley 1406d3beeddSMatthew Knepley diag = a->diag; 1416d3beeddSMatthew Knepley idiag = a->idiag; 1426d3beeddSMatthew Knepley ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 1436d3beeddSMatthew Knepley ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 1446d3beeddSMatthew Knepley 1456d3beeddSMatthew Knepley if (flag & SOR_ZERO_INITIAL_GUESS) { 1466d3beeddSMatthew Knepley if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){ 1476d3beeddSMatthew Knepley x[0] = b[0]*idiag[0]; 1486d3beeddSMatthew Knepley i2 = 1; 1496d3beeddSMatthew Knepley idiag += 1; 1506d3beeddSMatthew Knepley for (i=1; i<m; i++) { 1516d3beeddSMatthew Knepley v = aa + ai[i]; 1526d3beeddSMatthew Knepley vi = aj + ai[i]; 1536d3beeddSMatthew Knepley nz = diag[i] - ai[i]; 1546d3beeddSMatthew Knepley s1 = b[i2]; 1556d3beeddSMatthew Knepley while (nz--) { 1566d3beeddSMatthew Knepley idx = (*vi++); 1576d3beeddSMatthew Knepley x1 = x[idx]; 1586d3beeddSMatthew Knepley s1 -= v[0]*x1; 1596d3beeddSMatthew Knepley v += 1; 1606d3beeddSMatthew Knepley } 1616d3beeddSMatthew Knepley x[i2] = idiag[0]*s1; 1626d3beeddSMatthew Knepley idiag += 1; 1636d3beeddSMatthew Knepley i2 += 1; 1646d3beeddSMatthew Knepley } 1656d3beeddSMatthew Knepley /* for logging purposes assume number of nonzero in lower half is 1/2 of total */ 1666d3beeddSMatthew Knepley ierr = PetscLogFlops(a->nz);CHKERRQ(ierr); 1676d3beeddSMatthew Knepley } 1686d3beeddSMatthew Knepley if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) && 1696d3beeddSMatthew Knepley (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) { 1706d3beeddSMatthew Knepley i2 = 0; 1716d3beeddSMatthew Knepley mdiag = a->idiag+a->mbs; 1726d3beeddSMatthew Knepley for (i=0; i<m; i++) { 1736d3beeddSMatthew Knepley x1 = x[i2]; 1746d3beeddSMatthew Knepley x[i2] = mdiag[0]*x1; 1756d3beeddSMatthew Knepley mdiag += 1; 1766d3beeddSMatthew Knepley i2 += 1; 1776d3beeddSMatthew Knepley } 1786d3beeddSMatthew Knepley ierr = PetscLogFlops(m);CHKERRQ(ierr); 1796d3beeddSMatthew Knepley } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) { 1806d3beeddSMatthew Knepley ierr = PetscMemcpy(x,b,A->rmap.N*sizeof(PetscScalar));CHKERRQ(ierr); 1816d3beeddSMatthew Knepley } 1826d3beeddSMatthew Knepley if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){ 1836d3beeddSMatthew Knepley idiag = a->idiag+a->mbs - 1; 1846d3beeddSMatthew Knepley i2 = m - 1; 1856d3beeddSMatthew Knepley x1 = x[i2]; 1866d3beeddSMatthew Knepley x[i2] = idiag[0]*x1; 1876d3beeddSMatthew Knepley idiag -= 1; 1886d3beeddSMatthew Knepley i2 -= 1; 1896d3beeddSMatthew Knepley for (i=m-2; i>=0; i--) { 1906d3beeddSMatthew Knepley v = aa + (diag[i]+1); 1916d3beeddSMatthew Knepley vi = aj + diag[i] + 1; 1926d3beeddSMatthew Knepley nz = ai[i+1] - diag[i] - 1; 1936d3beeddSMatthew Knepley s1 = x[i2]; 1946d3beeddSMatthew Knepley while (nz--) { 1956d3beeddSMatthew Knepley idx = (*vi++); 1966d3beeddSMatthew Knepley x1 = x[idx]; 1976d3beeddSMatthew Knepley s1 -= v[0]*x1; 1986d3beeddSMatthew Knepley v += 1; 1996d3beeddSMatthew Knepley } 2006d3beeddSMatthew Knepley x[i2] = idiag[0]*s1; 2016d3beeddSMatthew Knepley idiag -= 2; 2026d3beeddSMatthew Knepley i2 -= 1; 2036d3beeddSMatthew Knepley } 2046d3beeddSMatthew Knepley ierr = PetscLogFlops(a->nz);CHKERRQ(ierr); 2056d3beeddSMatthew Knepley } 2066d3beeddSMatthew Knepley } else { 2076d3beeddSMatthew Knepley SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess"); 2086d3beeddSMatthew Knepley } 2096d3beeddSMatthew Knepley ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 2106d3beeddSMatthew Knepley ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 2116d3beeddSMatthew Knepley PetscFunctionReturn(0); 2126d3beeddSMatthew Knepley } 2136d3beeddSMatthew Knepley 2146d3beeddSMatthew Knepley #undef __FUNCT__ 215b01c7715SBarry Smith #define __FUNCT__ "MatPBRelax_SeqBAIJ_2" 216c1ac3661SBarry Smith PetscErrorCode MatPBRelax_SeqBAIJ_2(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 217b01c7715SBarry Smith { 218b01c7715SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 219b01c7715SBarry Smith PetscScalar *x,x1,x2,s1,s2; 220dd6ea824SBarry Smith const PetscScalar *b; 221dd6ea824SBarry Smith const MatScalar *v,*aa = a->a, *idiag,*mdiag; 222dfbe8321SBarry Smith PetscErrorCode ierr; 223c1ac3661SBarry Smith PetscInt m = a->mbs,i,i2,nz,idx; 224c1ac3661SBarry Smith const PetscInt *diag,*ai = a->i,*aj = a->j,*vi; 225b01c7715SBarry Smith 226b01c7715SBarry Smith PetscFunctionBegin; 22751f519a2SBarry Smith if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat"); 228b01c7715SBarry Smith its = its*lits; 22977431f27SBarry Smith if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 230b01c7715SBarry Smith if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift"); 231b01c7715SBarry Smith if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor"); 23271f1c65dSBarry Smith if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts"); 233b01c7715SBarry Smith if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations"); 234b01c7715SBarry Smith 235b01c7715SBarry Smith if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);} 236b01c7715SBarry Smith 237b01c7715SBarry Smith diag = a->diag; 238b01c7715SBarry Smith idiag = a->idiag; 2391ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 2401ebc52fbSHong Zhang ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 241b01c7715SBarry Smith 242b01c7715SBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 243b01c7715SBarry Smith if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){ 244b01c7715SBarry Smith x[0] = b[0]*idiag[0] + b[1]*idiag[2]; 245b01c7715SBarry Smith x[1] = b[0]*idiag[1] + b[1]*idiag[3]; 246b01c7715SBarry Smith i2 = 2; 247b01c7715SBarry Smith idiag += 4; 248b01c7715SBarry Smith for (i=1; i<m; i++) { 249b01c7715SBarry Smith v = aa + 4*ai[i]; 250b01c7715SBarry Smith vi = aj + ai[i]; 251b01c7715SBarry Smith nz = diag[i] - ai[i]; 252b01c7715SBarry Smith s1 = b[i2]; s2 = b[i2+1]; 253b01c7715SBarry Smith while (nz--) { 254b01c7715SBarry Smith idx = 2*(*vi++); 255b01c7715SBarry Smith x1 = x[idx]; x2 = x[1+idx]; 256b01c7715SBarry Smith s1 -= v[0]*x1 + v[2]*x2; 257b01c7715SBarry Smith s2 -= v[1]*x1 + v[3]*x2; 258b01c7715SBarry Smith v += 4; 259b01c7715SBarry Smith } 260b01c7715SBarry Smith x[i2] = idiag[0]*s1 + idiag[2]*s2; 261b01c7715SBarry Smith x[i2+1] = idiag[1]*s1 + idiag[3]*s2; 262b01c7715SBarry Smith idiag += 4; 263b01c7715SBarry Smith i2 += 2; 264b01c7715SBarry Smith } 265b01c7715SBarry Smith /* for logging purposes assume number of nonzero in lower half is 1/2 of total */ 266efee365bSSatish Balay ierr = PetscLogFlops(4*(a->nz));CHKERRQ(ierr); 267b01c7715SBarry Smith } 268b01c7715SBarry Smith if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) && 269b01c7715SBarry Smith (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) { 270b01c7715SBarry Smith i2 = 0; 271b01c7715SBarry Smith mdiag = a->idiag+4*a->mbs; 272b01c7715SBarry Smith for (i=0; i<m; i++) { 273b01c7715SBarry Smith x1 = x[i2]; x2 = x[i2+1]; 274b01c7715SBarry Smith x[i2] = mdiag[0]*x1 + mdiag[2]*x2; 275b01c7715SBarry Smith x[i2+1] = mdiag[1]*x1 + mdiag[3]*x2; 276b01c7715SBarry Smith mdiag += 4; 277b01c7715SBarry Smith i2 += 2; 278b01c7715SBarry Smith } 279efee365bSSatish Balay ierr = PetscLogFlops(6*m);CHKERRQ(ierr); 280b01c7715SBarry Smith } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) { 281899cda47SBarry Smith ierr = PetscMemcpy(x,b,A->rmap.N*sizeof(PetscScalar));CHKERRQ(ierr); 282b01c7715SBarry Smith } 283b01c7715SBarry Smith if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){ 284b01c7715SBarry Smith idiag = a->idiag+4*a->mbs - 4; 285b01c7715SBarry Smith i2 = 2*m - 2; 286b01c7715SBarry Smith x1 = x[i2]; x2 = x[i2+1]; 287b01c7715SBarry Smith x[i2] = idiag[0]*x1 + idiag[2]*x2; 288b01c7715SBarry Smith x[i2+1] = idiag[1]*x1 + idiag[3]*x2; 289b01c7715SBarry Smith idiag -= 4; 290b01c7715SBarry Smith i2 -= 2; 291b01c7715SBarry Smith for (i=m-2; i>=0; i--) { 292b01c7715SBarry Smith v = aa + 4*(diag[i]+1); 293b01c7715SBarry Smith vi = aj + diag[i] + 1; 294b01c7715SBarry Smith nz = ai[i+1] - diag[i] - 1; 295b01c7715SBarry Smith s1 = x[i2]; s2 = x[i2+1]; 296b01c7715SBarry Smith while (nz--) { 297b01c7715SBarry Smith idx = 2*(*vi++); 298b01c7715SBarry Smith x1 = x[idx]; x2 = x[1+idx]; 299b01c7715SBarry Smith s1 -= v[0]*x1 + v[2]*x2; 300b01c7715SBarry Smith s2 -= v[1]*x1 + v[3]*x2; 301b01c7715SBarry Smith v += 4; 302b01c7715SBarry Smith } 303b01c7715SBarry Smith x[i2] = idiag[0]*s1 + idiag[2]*s2; 304b01c7715SBarry Smith x[i2+1] = idiag[1]*s1 + idiag[3]*s2; 305b01c7715SBarry Smith idiag -= 4; 306b01c7715SBarry Smith i2 -= 2; 307b01c7715SBarry Smith } 308efee365bSSatish Balay ierr = PetscLogFlops(4*(a->nz));CHKERRQ(ierr); 309b01c7715SBarry Smith } 310b01c7715SBarry Smith } else { 311634064b4SBarry Smith SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess"); 312b01c7715SBarry Smith } 3131ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 3141ebc52fbSHong Zhang ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 315b01c7715SBarry Smith PetscFunctionReturn(0); 316b01c7715SBarry Smith } 317b01c7715SBarry Smith 318b01c7715SBarry Smith #undef __FUNCT__ 319b01c7715SBarry Smith #define __FUNCT__ "MatPBRelax_SeqBAIJ_3" 320c1ac3661SBarry Smith PetscErrorCode MatPBRelax_SeqBAIJ_3(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 321b01c7715SBarry Smith { 322b01c7715SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 323b01c7715SBarry Smith PetscScalar *x,x1,x2,x3,s1,s2,s3; 324dd6ea824SBarry Smith const MatScalar *v,*aa = a->a, *idiag,*mdiag; 325dd6ea824SBarry Smith const PetscScalar *b; 326dfbe8321SBarry Smith PetscErrorCode ierr; 327c1ac3661SBarry Smith PetscInt m = a->mbs,i,i2,nz,idx; 328c1ac3661SBarry Smith const PetscInt *diag,*ai = a->i,*aj = a->j,*vi; 329b01c7715SBarry Smith 330b01c7715SBarry Smith PetscFunctionBegin; 331b01c7715SBarry Smith its = its*lits; 33271f1c65dSBarry Smith if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat"); 33377431f27SBarry Smith if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 334b01c7715SBarry Smith if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift"); 335b01c7715SBarry Smith if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor"); 33671f1c65dSBarry Smith if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts"); 337b01c7715SBarry Smith if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations"); 338b01c7715SBarry Smith 339b01c7715SBarry Smith if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);} 340b01c7715SBarry Smith 341b01c7715SBarry Smith diag = a->diag; 342b01c7715SBarry Smith idiag = a->idiag; 3431ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 3441ebc52fbSHong Zhang ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 345b01c7715SBarry Smith 346b01c7715SBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 347b01c7715SBarry Smith if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){ 348b01c7715SBarry Smith x[0] = b[0]*idiag[0] + b[1]*idiag[3] + b[2]*idiag[6]; 349b01c7715SBarry Smith x[1] = b[0]*idiag[1] + b[1]*idiag[4] + b[2]*idiag[7]; 350b01c7715SBarry Smith x[2] = b[0]*idiag[2] + b[1]*idiag[5] + b[2]*idiag[8]; 351b01c7715SBarry Smith i2 = 3; 352b01c7715SBarry Smith idiag += 9; 353b01c7715SBarry Smith for (i=1; i<m; i++) { 354b01c7715SBarry Smith v = aa + 9*ai[i]; 355b01c7715SBarry Smith vi = aj + ai[i]; 356b01c7715SBarry Smith nz = diag[i] - ai[i]; 357b01c7715SBarry Smith s1 = b[i2]; s2 = b[i2+1]; s3 = b[i2+2]; 358b01c7715SBarry Smith while (nz--) { 359b01c7715SBarry Smith idx = 3*(*vi++); 360b01c7715SBarry Smith x1 = x[idx]; x2 = x[1+idx];x3 = x[2+idx]; 361b01c7715SBarry Smith s1 -= v[0]*x1 + v[3]*x2 + v[6]*x3; 362b01c7715SBarry Smith s2 -= v[1]*x1 + v[4]*x2 + v[7]*x3; 363b01c7715SBarry Smith s3 -= v[2]*x1 + v[5]*x2 + v[8]*x3; 364b01c7715SBarry Smith v += 9; 365b01c7715SBarry Smith } 366b01c7715SBarry Smith x[i2] = idiag[0]*s1 + idiag[3]*s2 + idiag[6]*s3; 367b01c7715SBarry Smith x[i2+1] = idiag[1]*s1 + idiag[4]*s2 + idiag[7]*s3; 368b01c7715SBarry Smith x[i2+2] = idiag[2]*s1 + idiag[5]*s2 + idiag[8]*s3; 369b01c7715SBarry Smith idiag += 9; 370b01c7715SBarry Smith i2 += 3; 371b01c7715SBarry Smith } 372b01c7715SBarry Smith /* for logging purposes assume number of nonzero in lower half is 1/2 of total */ 373efee365bSSatish Balay ierr = PetscLogFlops(9*(a->nz));CHKERRQ(ierr); 374b01c7715SBarry Smith } 375b01c7715SBarry Smith if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) && 376b01c7715SBarry Smith (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) { 377b01c7715SBarry Smith i2 = 0; 378b01c7715SBarry Smith mdiag = a->idiag+9*a->mbs; 379b01c7715SBarry Smith for (i=0; i<m; i++) { 380b01c7715SBarry Smith x1 = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; 381b01c7715SBarry Smith x[i2] = mdiag[0]*x1 + mdiag[3]*x2 + mdiag[6]*x3; 382b01c7715SBarry Smith x[i2+1] = mdiag[1]*x1 + mdiag[4]*x2 + mdiag[7]*x3; 383b01c7715SBarry Smith x[i2+2] = mdiag[2]*x1 + mdiag[5]*x2 + mdiag[8]*x3; 384b01c7715SBarry Smith mdiag += 9; 385b01c7715SBarry Smith i2 += 3; 386b01c7715SBarry Smith } 387efee365bSSatish Balay ierr = PetscLogFlops(15*m);CHKERRQ(ierr); 388b01c7715SBarry Smith } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) { 389899cda47SBarry Smith ierr = PetscMemcpy(x,b,A->rmap.N*sizeof(PetscScalar));CHKERRQ(ierr); 390b01c7715SBarry Smith } 391b01c7715SBarry Smith if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){ 392b01c7715SBarry Smith idiag = a->idiag+9*a->mbs - 9; 393b01c7715SBarry Smith i2 = 3*m - 3; 394b01c7715SBarry Smith x1 = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; 395b01c7715SBarry Smith x[i2] = idiag[0]*x1 + idiag[3]*x2 + idiag[6]*x3; 396b01c7715SBarry Smith x[i2+1] = idiag[1]*x1 + idiag[4]*x2 + idiag[7]*x3; 397b01c7715SBarry Smith x[i2+2] = idiag[2]*x1 + idiag[5]*x2 + idiag[8]*x3; 398b01c7715SBarry Smith idiag -= 9; 399b01c7715SBarry Smith i2 -= 3; 400b01c7715SBarry Smith for (i=m-2; i>=0; i--) { 401b01c7715SBarry Smith v = aa + 9*(diag[i]+1); 402b01c7715SBarry Smith vi = aj + diag[i] + 1; 403b01c7715SBarry Smith nz = ai[i+1] - diag[i] - 1; 404b01c7715SBarry Smith s1 = x[i2]; s2 = x[i2+1]; s3 = x[i2+2]; 405b01c7715SBarry Smith while (nz--) { 406b01c7715SBarry Smith idx = 3*(*vi++); 407b01c7715SBarry Smith x1 = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; 408b01c7715SBarry Smith s1 -= v[0]*x1 + v[3]*x2 + v[6]*x3; 409b01c7715SBarry Smith s2 -= v[1]*x1 + v[4]*x2 + v[7]*x3; 410b01c7715SBarry Smith s3 -= v[2]*x1 + v[5]*x2 + v[8]*x3; 411b01c7715SBarry Smith v += 9; 412b01c7715SBarry Smith } 413b01c7715SBarry Smith x[i2] = idiag[0]*s1 + idiag[3]*s2 + idiag[6]*s3; 414b01c7715SBarry Smith x[i2+1] = idiag[1]*s1 + idiag[4]*s2 + idiag[7]*s3; 415b01c7715SBarry Smith x[i2+2] = idiag[2]*s1 + idiag[5]*s2 + idiag[8]*s3; 416b01c7715SBarry Smith idiag -= 9; 417b01c7715SBarry Smith i2 -= 3; 418b01c7715SBarry Smith } 419efee365bSSatish Balay ierr = PetscLogFlops(9*(a->nz));CHKERRQ(ierr); 420b01c7715SBarry Smith } 421b01c7715SBarry Smith } else { 422634064b4SBarry Smith SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess"); 423b01c7715SBarry Smith } 4241ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 4251ebc52fbSHong Zhang ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 426b01c7715SBarry Smith PetscFunctionReturn(0); 427b01c7715SBarry Smith } 428b01c7715SBarry Smith 429b01c7715SBarry Smith #undef __FUNCT__ 430b01c7715SBarry Smith #define __FUNCT__ "MatPBRelax_SeqBAIJ_4" 431c1ac3661SBarry Smith PetscErrorCode MatPBRelax_SeqBAIJ_4(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 432b01c7715SBarry Smith { 433b01c7715SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 434b01c7715SBarry Smith PetscScalar *x,x1,x2,x3,x4,s1,s2,s3,s4; 435dd6ea824SBarry Smith const MatScalar *v,*aa = a->a, *idiag,*mdiag; 436dd6ea824SBarry Smith const PetscScalar *b; 437dfbe8321SBarry Smith PetscErrorCode ierr; 438c1ac3661SBarry Smith PetscInt m = a->mbs,i,i2,nz,idx; 439c1ac3661SBarry Smith const PetscInt *diag,*ai = a->i,*aj = a->j,*vi; 440b01c7715SBarry Smith 441b01c7715SBarry Smith PetscFunctionBegin; 44271f1c65dSBarry Smith if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat"); 443b01c7715SBarry Smith its = its*lits; 44477431f27SBarry Smith if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 445b01c7715SBarry Smith if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift"); 446b01c7715SBarry Smith if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor"); 44771f1c65dSBarry Smith if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts"); 448b01c7715SBarry Smith if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations"); 449b01c7715SBarry Smith 450b01c7715SBarry Smith if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);} 451b01c7715SBarry Smith 452b01c7715SBarry Smith diag = a->diag; 453b01c7715SBarry Smith idiag = a->idiag; 4541ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 4551ebc52fbSHong Zhang ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 456b01c7715SBarry Smith 457b01c7715SBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 458b01c7715SBarry Smith if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){ 459b01c7715SBarry Smith x[0] = b[0]*idiag[0] + b[1]*idiag[4] + b[2]*idiag[8] + b[3]*idiag[12]; 460b01c7715SBarry Smith x[1] = b[0]*idiag[1] + b[1]*idiag[5] + b[2]*idiag[9] + b[3]*idiag[13]; 461b01c7715SBarry Smith x[2] = b[0]*idiag[2] + b[1]*idiag[6] + b[2]*idiag[10] + b[3]*idiag[14]; 462b01c7715SBarry Smith x[3] = b[0]*idiag[3] + b[1]*idiag[7] + b[2]*idiag[11] + b[3]*idiag[15]; 463b01c7715SBarry Smith i2 = 4; 464b01c7715SBarry Smith idiag += 16; 465b01c7715SBarry Smith for (i=1; i<m; i++) { 466b01c7715SBarry Smith v = aa + 16*ai[i]; 467b01c7715SBarry Smith vi = aj + ai[i]; 468b01c7715SBarry Smith nz = diag[i] - ai[i]; 469b01c7715SBarry Smith s1 = b[i2]; s2 = b[i2+1]; s3 = b[i2+2]; s4 = b[i2+3]; 470b01c7715SBarry Smith while (nz--) { 471b01c7715SBarry Smith idx = 4*(*vi++); 472b01c7715SBarry Smith x1 = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; 473b01c7715SBarry Smith s1 -= v[0]*x1 + v[4]*x2 + v[8]*x3 + v[12]*x4; 474b01c7715SBarry Smith s2 -= v[1]*x1 + v[5]*x2 + v[9]*x3 + v[13]*x4; 475b01c7715SBarry Smith s3 -= v[2]*x1 + v[6]*x2 + v[10]*x3 + v[14]*x4; 476b01c7715SBarry Smith s4 -= v[3]*x1 + v[7]*x2 + v[11]*x3 + v[15]*x4; 477b01c7715SBarry Smith v += 16; 478b01c7715SBarry Smith } 479b01c7715SBarry Smith x[i2] = idiag[0]*s1 + idiag[4]*s2 + idiag[8]*s3 + idiag[12]*s4; 480b01c7715SBarry Smith x[i2+1] = idiag[1]*s1 + idiag[5]*s2 + idiag[9]*s3 + idiag[13]*s4; 481b01c7715SBarry Smith x[i2+2] = idiag[2]*s1 + idiag[6]*s2 + idiag[10]*s3 + idiag[14]*s4; 482b01c7715SBarry Smith x[i2+3] = idiag[3]*s1 + idiag[7]*s2 + idiag[11]*s3 + idiag[15]*s4; 483b01c7715SBarry Smith idiag += 16; 484b01c7715SBarry Smith i2 += 4; 485b01c7715SBarry Smith } 486b01c7715SBarry Smith /* for logging purposes assume number of nonzero in lower half is 1/2 of total */ 487efee365bSSatish Balay ierr = PetscLogFlops(16*(a->nz));CHKERRQ(ierr); 488b01c7715SBarry Smith } 489b01c7715SBarry Smith if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) && 490b01c7715SBarry Smith (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) { 491b01c7715SBarry Smith i2 = 0; 492b01c7715SBarry Smith mdiag = a->idiag+16*a->mbs; 493b01c7715SBarry Smith for (i=0; i<m; i++) { 494b01c7715SBarry Smith x1 = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; 495b01c7715SBarry Smith x[i2] = mdiag[0]*x1 + mdiag[4]*x2 + mdiag[8]*x3 + mdiag[12]*x4; 496b01c7715SBarry Smith x[i2+1] = mdiag[1]*x1 + mdiag[5]*x2 + mdiag[9]*x3 + mdiag[13]*x4; 497b01c7715SBarry Smith x[i2+2] = mdiag[2]*x1 + mdiag[6]*x2 + mdiag[10]*x3 + mdiag[14]*x4; 498b01c7715SBarry Smith x[i2+3] = mdiag[3]*x1 + mdiag[7]*x2 + mdiag[11]*x3 + mdiag[15]*x4; 499b01c7715SBarry Smith mdiag += 16; 500b01c7715SBarry Smith i2 += 4; 501b01c7715SBarry Smith } 502efee365bSSatish Balay ierr = PetscLogFlops(28*m);CHKERRQ(ierr); 503b01c7715SBarry Smith } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) { 504899cda47SBarry Smith ierr = PetscMemcpy(x,b,A->rmap.N*sizeof(PetscScalar));CHKERRQ(ierr); 505b01c7715SBarry Smith } 506b01c7715SBarry Smith if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){ 507b01c7715SBarry Smith idiag = a->idiag+16*a->mbs - 16; 508b01c7715SBarry Smith i2 = 4*m - 4; 509b01c7715SBarry Smith x1 = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; 510b01c7715SBarry Smith x[i2] = idiag[0]*x1 + idiag[4]*x2 + idiag[8]*x3 + idiag[12]*x4; 511b01c7715SBarry Smith x[i2+1] = idiag[1]*x1 + idiag[5]*x2 + idiag[9]*x3 + idiag[13]*x4; 512b01c7715SBarry Smith x[i2+2] = idiag[2]*x1 + idiag[6]*x2 + idiag[10]*x3 + idiag[14]*x4; 513b01c7715SBarry Smith x[i2+3] = idiag[3]*x1 + idiag[7]*x2 + idiag[11]*x3 + idiag[15]*x4; 514b01c7715SBarry Smith idiag -= 16; 515b01c7715SBarry Smith i2 -= 4; 516b01c7715SBarry Smith for (i=m-2; i>=0; i--) { 517b01c7715SBarry Smith v = aa + 16*(diag[i]+1); 518b01c7715SBarry Smith vi = aj + diag[i] + 1; 519b01c7715SBarry Smith nz = ai[i+1] - diag[i] - 1; 520b01c7715SBarry Smith s1 = x[i2]; s2 = x[i2+1]; s3 = x[i2+2]; s4 = x[i2+3]; 521b01c7715SBarry Smith while (nz--) { 522b01c7715SBarry Smith idx = 4*(*vi++); 523b01c7715SBarry Smith x1 = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; 524b01c7715SBarry Smith s1 -= v[0]*x1 + v[4]*x2 + v[8]*x3 + v[12]*x4; 525b01c7715SBarry Smith s2 -= v[1]*x1 + v[5]*x2 + v[9]*x3 + v[13]*x4; 526b01c7715SBarry Smith s3 -= v[2]*x1 + v[6]*x2 + v[10]*x3 + v[14]*x4; 527b01c7715SBarry Smith s4 -= v[3]*x1 + v[7]*x2 + v[11]*x3 + v[15]*x4; 528b01c7715SBarry Smith v += 16; 529b01c7715SBarry Smith } 530b01c7715SBarry Smith x[i2] = idiag[0]*s1 + idiag[4]*s2 + idiag[8]*s3 + idiag[12]*s4; 531b01c7715SBarry Smith x[i2+1] = idiag[1]*s1 + idiag[5]*s2 + idiag[9]*s3 + idiag[13]*s4; 532b01c7715SBarry Smith x[i2+2] = idiag[2]*s1 + idiag[6]*s2 + idiag[10]*s3 + idiag[14]*s4; 533b01c7715SBarry Smith x[i2+3] = idiag[3]*s1 + idiag[7]*s2 + idiag[11]*s3 + idiag[15]*s4; 534b01c7715SBarry Smith idiag -= 16; 535b01c7715SBarry Smith i2 -= 4; 536b01c7715SBarry Smith } 537efee365bSSatish Balay ierr = PetscLogFlops(16*(a->nz));CHKERRQ(ierr); 538b01c7715SBarry Smith } 539b01c7715SBarry Smith } else { 540634064b4SBarry Smith SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess"); 541b01c7715SBarry Smith } 5421ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 5431ebc52fbSHong Zhang ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 544b01c7715SBarry Smith PetscFunctionReturn(0); 545b01c7715SBarry Smith } 546b01c7715SBarry Smith 547b01c7715SBarry Smith #undef __FUNCT__ 548b01c7715SBarry Smith #define __FUNCT__ "MatPBRelax_SeqBAIJ_5" 549c1ac3661SBarry Smith PetscErrorCode MatPBRelax_SeqBAIJ_5(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 550b01c7715SBarry Smith { 551b01c7715SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 552b01c7715SBarry Smith PetscScalar *x,x1,x2,x3,x4,x5,s1,s2,s3,s4,s5; 553dd6ea824SBarry Smith const MatScalar *v,*aa = a->a, *idiag,*mdiag; 554dd6ea824SBarry Smith const PetscScalar *b; 555dfbe8321SBarry Smith PetscErrorCode ierr; 556c1ac3661SBarry Smith PetscInt m = a->mbs,i,i2,nz,idx; 557c1ac3661SBarry Smith const PetscInt *diag,*ai = a->i,*aj = a->j,*vi; 558b01c7715SBarry Smith 559b01c7715SBarry Smith PetscFunctionBegin; 56071f1c65dSBarry Smith if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat"); 561b01c7715SBarry Smith its = its*lits; 56277431f27SBarry Smith if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 563b01c7715SBarry Smith if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift"); 564b01c7715SBarry Smith if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor"); 56571f1c65dSBarry Smith if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts"); 566b01c7715SBarry Smith if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations"); 567b01c7715SBarry Smith 568b01c7715SBarry Smith if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);} 569b01c7715SBarry Smith 570b01c7715SBarry Smith diag = a->diag; 571b01c7715SBarry Smith idiag = a->idiag; 5721ebc52fbSHong Zhang ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 5731ebc52fbSHong Zhang ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 574b01c7715SBarry Smith 575b01c7715SBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 576b01c7715SBarry Smith if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){ 577b01c7715SBarry Smith x[0] = b[0]*idiag[0] + b[1]*idiag[5] + b[2]*idiag[10] + b[3]*idiag[15] + b[4]*idiag[20]; 578b01c7715SBarry Smith x[1] = b[0]*idiag[1] + b[1]*idiag[6] + b[2]*idiag[11] + b[3]*idiag[16] + b[4]*idiag[21]; 579b01c7715SBarry Smith x[2] = b[0]*idiag[2] + b[1]*idiag[7] + b[2]*idiag[12] + b[3]*idiag[17] + b[4]*idiag[22]; 580b01c7715SBarry Smith x[3] = b[0]*idiag[3] + b[1]*idiag[8] + b[2]*idiag[13] + b[3]*idiag[18] + b[4]*idiag[23]; 581b01c7715SBarry Smith x[4] = b[0]*idiag[4] + b[1]*idiag[9] + b[2]*idiag[14] + b[3]*idiag[19] + b[4]*idiag[24]; 582b01c7715SBarry Smith i2 = 5; 583b01c7715SBarry Smith idiag += 25; 584b01c7715SBarry Smith for (i=1; i<m; i++) { 585b01c7715SBarry Smith v = aa + 25*ai[i]; 586b01c7715SBarry Smith vi = aj + ai[i]; 587b01c7715SBarry Smith nz = diag[i] - ai[i]; 588b01c7715SBarry Smith s1 = b[i2]; s2 = b[i2+1]; s3 = b[i2+2]; s4 = b[i2+3]; s5 = b[i2+4]; 589b01c7715SBarry Smith while (nz--) { 590b01c7715SBarry Smith idx = 5*(*vi++); 591b01c7715SBarry Smith x1 = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx]; 592b01c7715SBarry Smith s1 -= v[0]*x1 + v[5]*x2 + v[10]*x3 + v[15]*x4 + v[20]*x5; 593b01c7715SBarry Smith s2 -= v[1]*x1 + v[6]*x2 + v[11]*x3 + v[16]*x4 + v[21]*x5; 594b01c7715SBarry Smith s3 -= v[2]*x1 + v[7]*x2 + v[12]*x3 + v[17]*x4 + v[22]*x5; 595b01c7715SBarry Smith s4 -= v[3]*x1 + v[8]*x2 + v[13]*x3 + v[18]*x4 + v[23]*x5; 596b01c7715SBarry Smith s5 -= v[4]*x1 + v[9]*x2 + v[14]*x3 + v[19]*x4 + v[24]*x5; 597b01c7715SBarry Smith v += 25; 598b01c7715SBarry Smith } 599b01c7715SBarry Smith x[i2] = idiag[0]*s1 + idiag[5]*s2 + idiag[10]*s3 + idiag[15]*s4 + idiag[20]*s5; 600b01c7715SBarry Smith x[i2+1] = idiag[1]*s1 + idiag[6]*s2 + idiag[11]*s3 + idiag[16]*s4 + idiag[21]*s5; 601b01c7715SBarry Smith x[i2+2] = idiag[2]*s1 + idiag[7]*s2 + idiag[12]*s3 + idiag[17]*s4 + idiag[22]*s5; 602b01c7715SBarry Smith x[i2+3] = idiag[3]*s1 + idiag[8]*s2 + idiag[13]*s3 + idiag[18]*s4 + idiag[23]*s5; 603b01c7715SBarry Smith x[i2+4] = idiag[4]*s1 + idiag[9]*s2 + idiag[14]*s3 + idiag[19]*s4 + idiag[24]*s5; 604b01c7715SBarry Smith idiag += 25; 605b01c7715SBarry Smith i2 += 5; 606b01c7715SBarry Smith } 607b01c7715SBarry Smith /* for logging purposes assume number of nonzero in lower half is 1/2 of total */ 608efee365bSSatish Balay ierr = PetscLogFlops(25*(a->nz));CHKERRQ(ierr); 609b01c7715SBarry Smith } 610b01c7715SBarry Smith if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) && 611b01c7715SBarry Smith (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) { 612b01c7715SBarry Smith i2 = 0; 613b01c7715SBarry Smith mdiag = a->idiag+25*a->mbs; 614b01c7715SBarry Smith for (i=0; i<m; i++) { 615b01c7715SBarry Smith x1 = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4]; 616b01c7715SBarry Smith x[i2] = mdiag[0]*x1 + mdiag[5]*x2 + mdiag[10]*x3 + mdiag[15]*x4 + mdiag[20]*x5; 617b01c7715SBarry Smith x[i2+1] = mdiag[1]*x1 + mdiag[6]*x2 + mdiag[11]*x3 + mdiag[16]*x4 + mdiag[21]*x5; 618b01c7715SBarry Smith x[i2+2] = mdiag[2]*x1 + mdiag[7]*x2 + mdiag[12]*x3 + mdiag[17]*x4 + mdiag[22]*x5; 619b01c7715SBarry Smith x[i2+3] = mdiag[3]*x1 + mdiag[8]*x2 + mdiag[13]*x3 + mdiag[18]*x4 + mdiag[23]*x5; 620b01c7715SBarry Smith x[i2+4] = mdiag[4]*x1 + mdiag[9]*x2 + mdiag[14]*x3 + mdiag[19]*x4 + mdiag[24]*x5; 621b01c7715SBarry Smith mdiag += 25; 622b01c7715SBarry Smith i2 += 5; 623b01c7715SBarry Smith } 624efee365bSSatish Balay ierr = PetscLogFlops(45*m);CHKERRQ(ierr); 625b01c7715SBarry Smith } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) { 626899cda47SBarry Smith ierr = PetscMemcpy(x,b,A->rmap.N*sizeof(PetscScalar));CHKERRQ(ierr); 627b01c7715SBarry Smith } 628b01c7715SBarry Smith if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){ 629b01c7715SBarry Smith idiag = a->idiag+25*a->mbs - 25; 630b01c7715SBarry Smith i2 = 5*m - 5; 631b01c7715SBarry Smith x1 = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4]; 632b01c7715SBarry Smith x[i2] = idiag[0]*x1 + idiag[5]*x2 + idiag[10]*x3 + idiag[15]*x4 + idiag[20]*x5; 633b01c7715SBarry Smith x[i2+1] = idiag[1]*x1 + idiag[6]*x2 + idiag[11]*x3 + idiag[16]*x4 + idiag[21]*x5; 634b01c7715SBarry Smith x[i2+2] = idiag[2]*x1 + idiag[7]*x2 + idiag[12]*x3 + idiag[17]*x4 + idiag[22]*x5; 635b01c7715SBarry Smith x[i2+3] = idiag[3]*x1 + idiag[8]*x2 + idiag[13]*x3 + idiag[18]*x4 + idiag[23]*x5; 636b01c7715SBarry Smith x[i2+4] = idiag[4]*x1 + idiag[9]*x2 + idiag[14]*x3 + idiag[19]*x4 + idiag[24]*x5; 637b01c7715SBarry Smith idiag -= 25; 638b01c7715SBarry Smith i2 -= 5; 639b01c7715SBarry Smith for (i=m-2; i>=0; i--) { 640b01c7715SBarry Smith v = aa + 25*(diag[i]+1); 641b01c7715SBarry Smith vi = aj + diag[i] + 1; 642b01c7715SBarry Smith nz = ai[i+1] - diag[i] - 1; 643b01c7715SBarry Smith s1 = x[i2]; s2 = x[i2+1]; s3 = x[i2+2]; s4 = x[i2+3]; s5 = x[i2+4]; 644b01c7715SBarry Smith while (nz--) { 645b01c7715SBarry Smith idx = 5*(*vi++); 646b01c7715SBarry Smith x1 = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx]; 647b01c7715SBarry Smith s1 -= v[0]*x1 + v[5]*x2 + v[10]*x3 + v[15]*x4 + v[20]*x5; 648b01c7715SBarry Smith s2 -= v[1]*x1 + v[6]*x2 + v[11]*x3 + v[16]*x4 + v[21]*x5; 649b01c7715SBarry Smith s3 -= v[2]*x1 + v[7]*x2 + v[12]*x3 + v[17]*x4 + v[22]*x5; 650b01c7715SBarry Smith s4 -= v[3]*x1 + v[8]*x2 + v[13]*x3 + v[18]*x4 + v[23]*x5; 651b01c7715SBarry Smith s5 -= v[4]*x1 + v[9]*x2 + v[14]*x3 + v[19]*x4 + v[24]*x5; 652b01c7715SBarry Smith v += 25; 653b01c7715SBarry Smith } 654b01c7715SBarry Smith x[i2] = idiag[0]*s1 + idiag[5]*s2 + idiag[10]*s3 + idiag[15]*s4 + idiag[20]*s5; 655b01c7715SBarry Smith x[i2+1] = idiag[1]*s1 + idiag[6]*s2 + idiag[11]*s3 + idiag[16]*s4 + idiag[21]*s5; 656b01c7715SBarry Smith x[i2+2] = idiag[2]*s1 + idiag[7]*s2 + idiag[12]*s3 + idiag[17]*s4 + idiag[22]*s5; 657b01c7715SBarry Smith x[i2+3] = idiag[3]*s1 + idiag[8]*s2 + idiag[13]*s3 + idiag[18]*s4 + idiag[23]*s5; 658b01c7715SBarry Smith x[i2+4] = idiag[4]*s1 + idiag[9]*s2 + idiag[14]*s3 + idiag[19]*s4 + idiag[24]*s5; 659b01c7715SBarry Smith idiag -= 25; 660b01c7715SBarry Smith i2 -= 5; 661b01c7715SBarry Smith } 662efee365bSSatish Balay ierr = PetscLogFlops(25*(a->nz));CHKERRQ(ierr); 663b01c7715SBarry Smith } 664b01c7715SBarry Smith } else { 665634064b4SBarry Smith SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess"); 666b01c7715SBarry Smith } 6671ebc52fbSHong Zhang ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 6681ebc52fbSHong Zhang ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 669b01c7715SBarry Smith PetscFunctionReturn(0); 670b01c7715SBarry Smith } 671b01c7715SBarry Smith 6726d3beeddSMatthew Knepley #undef __FUNCT__ 6736d3beeddSMatthew Knepley #define __FUNCT__ "MatPBRelax_SeqBAIJ_6" 6746d3beeddSMatthew Knepley PetscErrorCode MatPBRelax_SeqBAIJ_6(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 6756d3beeddSMatthew Knepley { 6766d3beeddSMatthew Knepley Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 6776d3beeddSMatthew Knepley PetscScalar *x,x1,x2,x3,x4,x5,x6,s1,s2,s3,s4,s5,s6; 678dd6ea824SBarry Smith const MatScalar *v,*aa = a->a, *idiag,*mdiag; 679dd6ea824SBarry Smith const PetscScalar *b; 6806d3beeddSMatthew Knepley PetscErrorCode ierr; 6816d3beeddSMatthew Knepley PetscInt m = a->mbs,i,i2,nz,idx; 6826d3beeddSMatthew Knepley const PetscInt *diag,*ai = a->i,*aj = a->j,*vi; 6836d3beeddSMatthew Knepley 6846d3beeddSMatthew Knepley PetscFunctionBegin; 6856d3beeddSMatthew Knepley if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat"); 6866d3beeddSMatthew Knepley its = its*lits; 6876d3beeddSMatthew Knepley if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 6886d3beeddSMatthew Knepley if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift"); 6896d3beeddSMatthew Knepley if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor"); 6906d3beeddSMatthew Knepley if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts"); 6916d3beeddSMatthew Knepley if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations"); 6926d3beeddSMatthew Knepley 6936d3beeddSMatthew Knepley if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);} 6946d3beeddSMatthew Knepley 6956d3beeddSMatthew Knepley diag = a->diag; 6966d3beeddSMatthew Knepley idiag = a->idiag; 6976d3beeddSMatthew Knepley ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 6986d3beeddSMatthew Knepley ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 6996d3beeddSMatthew Knepley 7006d3beeddSMatthew Knepley if (flag & SOR_ZERO_INITIAL_GUESS) { 7016d3beeddSMatthew Knepley if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){ 7026d3beeddSMatthew Knepley x[0] = b[0]*idiag[0] + b[1]*idiag[6] + b[2]*idiag[12] + b[3]*idiag[18] + b[4]*idiag[24] + b[5]*idiag[30]; 7036d3beeddSMatthew Knepley x[1] = b[0]*idiag[1] + b[1]*idiag[7] + b[2]*idiag[13] + b[3]*idiag[19] + b[4]*idiag[25] + b[5]*idiag[31]; 7046d3beeddSMatthew Knepley x[2] = b[0]*idiag[2] + b[1]*idiag[8] + b[2]*idiag[14] + b[3]*idiag[20] + b[4]*idiag[26] + b[5]*idiag[32]; 7056d3beeddSMatthew Knepley x[3] = b[0]*idiag[3] + b[1]*idiag[9] + b[2]*idiag[15] + b[3]*idiag[21] + b[4]*idiag[27] + b[5]*idiag[33]; 7066d3beeddSMatthew Knepley x[4] = b[0]*idiag[4] + b[1]*idiag[10] + b[2]*idiag[16] + b[3]*idiag[22] + b[4]*idiag[28] + b[5]*idiag[34]; 7076d3beeddSMatthew Knepley x[5] = b[0]*idiag[5] + b[1]*idiag[11] + b[2]*idiag[17] + b[3]*idiag[23] + b[4]*idiag[29] + b[5]*idiag[35]; 7086d3beeddSMatthew Knepley i2 = 6; 7096d3beeddSMatthew Knepley idiag += 36; 7106d3beeddSMatthew Knepley for (i=1; i<m; i++) { 7116d3beeddSMatthew Knepley v = aa + 36*ai[i]; 7126d3beeddSMatthew Knepley vi = aj + ai[i]; 7136d3beeddSMatthew Knepley nz = diag[i] - ai[i]; 7146d3beeddSMatthew Knepley s1 = b[i2]; s2 = b[i2+1]; s3 = b[i2+2]; s4 = b[i2+3]; s5 = b[i2+4]; s6 = b[i2+5]; 7156d3beeddSMatthew Knepley while (nz--) { 7166d3beeddSMatthew Knepley idx = 6*(*vi++); 7176d3beeddSMatthew Knepley x1 = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx]; x6 = x[5+idx]; 7186d3beeddSMatthew Knepley s1 -= v[0]*x1 + v[6]*x2 + v[12]*x3 + v[18]*x4 + v[24]*x5 + v[30]*x6; 7196d3beeddSMatthew Knepley s2 -= v[1]*x1 + v[7]*x2 + v[13]*x3 + v[19]*x4 + v[25]*x5 + v[31]*x6; 7206d3beeddSMatthew Knepley s3 -= v[2]*x1 + v[8]*x2 + v[14]*x3 + v[20]*x4 + v[26]*x5 + v[32]*x6; 7216d3beeddSMatthew Knepley s4 -= v[3]*x1 + v[9]*x2 + v[15]*x3 + v[21]*x4 + v[27]*x5 + v[33]*x6; 7226d3beeddSMatthew Knepley s5 -= v[4]*x1 + v[10]*x2 + v[16]*x3 + v[22]*x4 + v[28]*x5 + v[34]*x6; 7236d3beeddSMatthew Knepley s6 -= v[5]*x1 + v[11]*x2 + v[17]*x3 + v[23]*x4 + v[29]*x5 + v[35]*x6; 7246d3beeddSMatthew Knepley v += 36; 7256d3beeddSMatthew Knepley } 7266d3beeddSMatthew Knepley x[i2] = idiag[0]*s1 + idiag[6]*s2 + idiag[12]*s3 + idiag[18]*s4 + idiag[24]*s5 + idiag[30]*s6; 7276d3beeddSMatthew Knepley x[i2+1] = idiag[1]*s1 + idiag[7]*s2 + idiag[13]*s3 + idiag[19]*s4 + idiag[25]*s5 + idiag[31]*s6; 7286d3beeddSMatthew Knepley x[i2+2] = idiag[2]*s1 + idiag[8]*s2 + idiag[14]*s3 + idiag[20]*s4 + idiag[26]*s5 + idiag[32]*s6; 7296d3beeddSMatthew Knepley x[i2+3] = idiag[3]*s1 + idiag[9]*s2 + idiag[15]*s3 + idiag[21]*s4 + idiag[27]*s5 + idiag[33]*s6; 7306d3beeddSMatthew Knepley x[i2+4] = idiag[4]*s1 + idiag[10]*s2 + idiag[16]*s3 + idiag[22]*s4 + idiag[28]*s5 + idiag[34]*s6; 7316d3beeddSMatthew Knepley x[i2+5] = idiag[5]*s1 + idiag[11]*s2 + idiag[17]*s3 + idiag[23]*s4 + idiag[29]*s5 + idiag[35]*s6; 7326d3beeddSMatthew Knepley idiag += 36; 7336d3beeddSMatthew Knepley i2 += 6; 7346d3beeddSMatthew Knepley } 7356d3beeddSMatthew Knepley /* for logging purposes assume number of nonzero in lower half is 1/2 of total */ 7366d3beeddSMatthew Knepley ierr = PetscLogFlops(36*(a->nz));CHKERRQ(ierr); 7376d3beeddSMatthew Knepley } 7386d3beeddSMatthew Knepley if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) && 7396d3beeddSMatthew Knepley (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) { 7406d3beeddSMatthew Knepley i2 = 0; 7416d3beeddSMatthew Knepley mdiag = a->idiag+36*a->mbs; 7426d3beeddSMatthew Knepley for (i=0; i<m; i++) { 7436d3beeddSMatthew Knepley x1 = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4]; x6 = x[i2+5]; 7446d3beeddSMatthew Knepley x[i2] = mdiag[0]*x1 + mdiag[6]*x2 + mdiag[12]*x3 + mdiag[18]*x4 + mdiag[24]*x5 + mdiag[30]*x6; 7456d3beeddSMatthew Knepley x[i2+1] = mdiag[1]*x1 + mdiag[7]*x2 + mdiag[13]*x3 + mdiag[19]*x4 + mdiag[25]*x5 + mdiag[31]*x6; 7466d3beeddSMatthew Knepley x[i2+2] = mdiag[2]*x1 + mdiag[8]*x2 + mdiag[14]*x3 + mdiag[20]*x4 + mdiag[26]*x5 + mdiag[32]*x6; 7476d3beeddSMatthew Knepley x[i2+3] = mdiag[3]*x1 + mdiag[9]*x2 + mdiag[15]*x3 + mdiag[21]*x4 + mdiag[27]*x5 + mdiag[33]*x6; 7486d3beeddSMatthew Knepley x[i2+4] = mdiag[4]*x1 + mdiag[10]*x2 + mdiag[16]*x3 + mdiag[22]*x4 + mdiag[28]*x5 + mdiag[34]*x6; 7496d3beeddSMatthew Knepley x[i2+5] = mdiag[5]*x1 + mdiag[11]*x2 + mdiag[17]*x3 + mdiag[23]*x4 + mdiag[29]*x5 + mdiag[35]*x6; 7506d3beeddSMatthew Knepley mdiag += 36; 7516d3beeddSMatthew Knepley i2 += 6; 7526d3beeddSMatthew Knepley } 7536d3beeddSMatthew Knepley ierr = PetscLogFlops(60*m);CHKERRQ(ierr); 7546d3beeddSMatthew Knepley } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) { 7556d3beeddSMatthew Knepley ierr = PetscMemcpy(x,b,A->rmap.N*sizeof(PetscScalar));CHKERRQ(ierr); 7566d3beeddSMatthew Knepley } 7576d3beeddSMatthew Knepley if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){ 7586d3beeddSMatthew Knepley idiag = a->idiag+36*a->mbs - 36; 7596d3beeddSMatthew Knepley i2 = 6*m - 6; 7606d3beeddSMatthew Knepley x1 = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4]; x6 = x[i2+5]; 7616d3beeddSMatthew Knepley x[i2] = idiag[0]*x1 + idiag[6]*x2 + idiag[12]*x3 + idiag[18]*x4 + idiag[24]*x5 + idiag[30]*x6; 7626d3beeddSMatthew Knepley x[i2+1] = idiag[1]*x1 + idiag[7]*x2 + idiag[13]*x3 + idiag[19]*x4 + idiag[25]*x5 + idiag[31]*x6; 7636d3beeddSMatthew Knepley x[i2+2] = idiag[2]*x1 + idiag[8]*x2 + idiag[14]*x3 + idiag[20]*x4 + idiag[26]*x5 + idiag[32]*x6; 7646d3beeddSMatthew Knepley x[i2+3] = idiag[3]*x1 + idiag[9]*x2 + idiag[15]*x3 + idiag[21]*x4 + idiag[27]*x5 + idiag[33]*x6; 7656d3beeddSMatthew Knepley x[i2+4] = idiag[4]*x1 + idiag[10]*x2 + idiag[16]*x3 + idiag[22]*x4 + idiag[28]*x5 + idiag[34]*x6; 7666d3beeddSMatthew Knepley x[i2+5] = idiag[5]*x1 + idiag[11]*x2 + idiag[17]*x3 + idiag[23]*x4 + idiag[29]*x5 + idiag[35]*x6; 7676d3beeddSMatthew Knepley idiag -= 36; 7686d3beeddSMatthew Knepley i2 -= 6; 7696d3beeddSMatthew Knepley for (i=m-2; i>=0; i--) { 7706d3beeddSMatthew Knepley v = aa + 36*(diag[i]+1); 7716d3beeddSMatthew Knepley vi = aj + diag[i] + 1; 7726d3beeddSMatthew Knepley nz = ai[i+1] - diag[i] - 1; 7736d3beeddSMatthew Knepley s1 = x[i2]; s2 = x[i2+1]; s3 = x[i2+2]; s4 = x[i2+3]; s5 = x[i2+4]; s6 = x[i2+5]; 7746d3beeddSMatthew Knepley while (nz--) { 7756d3beeddSMatthew Knepley idx = 6*(*vi++); 7766d3beeddSMatthew Knepley x1 = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx]; x6 = x[5+idx]; 7776d3beeddSMatthew Knepley s1 -= v[0]*x1 + v[6]*x2 + v[12]*x3 + v[18]*x4 + v[24]*x5 + v[30]*x6; 7786d3beeddSMatthew Knepley s2 -= v[1]*x1 + v[7]*x2 + v[13]*x3 + v[19]*x4 + v[25]*x5 + v[31]*x6; 7796d3beeddSMatthew Knepley s3 -= v[2]*x1 + v[8]*x2 + v[14]*x3 + v[20]*x4 + v[26]*x5 + v[32]*x6; 7806d3beeddSMatthew Knepley s4 -= v[3]*x1 + v[9]*x2 + v[15]*x3 + v[21]*x4 + v[27]*x5 + v[33]*x6; 7816d3beeddSMatthew Knepley s5 -= v[4]*x1 + v[10]*x2 + v[16]*x3 + v[22]*x4 + v[28]*x5 + v[34]*x6; 7826d3beeddSMatthew Knepley s6 -= v[5]*x1 + v[11]*x2 + v[17]*x3 + v[23]*x4 + v[29]*x5 + v[35]*x6; 7836d3beeddSMatthew Knepley v += 36; 7846d3beeddSMatthew Knepley } 7856d3beeddSMatthew Knepley x[i2] = idiag[0]*s1 + idiag[6]*s2 + idiag[12]*s3 + idiag[18]*s4 + idiag[24]*s5 + idiag[30]*s6; 7866d3beeddSMatthew Knepley x[i2+1] = idiag[1]*s1 + idiag[7]*s2 + idiag[13]*s3 + idiag[19]*s4 + idiag[25]*s5 + idiag[31]*s6; 7876d3beeddSMatthew Knepley x[i2+2] = idiag[2]*s1 + idiag[8]*s2 + idiag[14]*s3 + idiag[20]*s4 + idiag[26]*s5 + idiag[32]*s6; 7886d3beeddSMatthew Knepley x[i2+3] = idiag[3]*s1 + idiag[9]*s2 + idiag[15]*s3 + idiag[21]*s4 + idiag[27]*s5 + idiag[33]*s6; 7896d3beeddSMatthew Knepley x[i2+4] = idiag[4]*s1 + idiag[10]*s2 + idiag[16]*s3 + idiag[22]*s4 + idiag[28]*s5 + idiag[34]*s6; 7906d3beeddSMatthew Knepley x[i2+5] = idiag[5]*s1 + idiag[11]*s2 + idiag[17]*s3 + idiag[23]*s4 + idiag[29]*s5 + idiag[35]*s6; 7916d3beeddSMatthew Knepley idiag -= 36; 7926d3beeddSMatthew Knepley i2 -= 6; 7936d3beeddSMatthew Knepley } 7946d3beeddSMatthew Knepley ierr = PetscLogFlops(36*(a->nz));CHKERRQ(ierr); 7956d3beeddSMatthew Knepley } 7966d3beeddSMatthew Knepley } else { 7976d3beeddSMatthew Knepley SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess"); 7986d3beeddSMatthew Knepley } 7996d3beeddSMatthew Knepley ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 8006d3beeddSMatthew Knepley ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 8016d3beeddSMatthew Knepley PetscFunctionReturn(0); 8026d3beeddSMatthew Knepley } 8036d3beeddSMatthew Knepley 8046d3beeddSMatthew Knepley #undef __FUNCT__ 8056d3beeddSMatthew Knepley #define __FUNCT__ "MatPBRelax_SeqBAIJ_7" 8066d3beeddSMatthew Knepley PetscErrorCode MatPBRelax_SeqBAIJ_7(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 8076d3beeddSMatthew Knepley { 8086d3beeddSMatthew Knepley Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 8096d3beeddSMatthew Knepley PetscScalar *x,x1,x2,x3,x4,x5,x6,x7,s1,s2,s3,s4,s5,s6,s7; 810dd6ea824SBarry Smith const MatScalar *v,*aa = a->a, *idiag,*mdiag; 811dd6ea824SBarry Smith const PetscScalar *b; 8126d3beeddSMatthew Knepley PetscErrorCode ierr; 8136d3beeddSMatthew Knepley PetscInt m = a->mbs,i,i2,nz,idx; 8146d3beeddSMatthew Knepley const PetscInt *diag,*ai = a->i,*aj = a->j,*vi; 8156d3beeddSMatthew Knepley 8166d3beeddSMatthew Knepley PetscFunctionBegin; 8176d3beeddSMatthew Knepley if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat"); 8186d3beeddSMatthew Knepley its = its*lits; 8196d3beeddSMatthew Knepley if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 8206d3beeddSMatthew Knepley if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift"); 8216d3beeddSMatthew Knepley if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor"); 8226d3beeddSMatthew Knepley if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts"); 8236d3beeddSMatthew Knepley if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations"); 8246d3beeddSMatthew Knepley 8256d3beeddSMatthew Knepley if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);} 8266d3beeddSMatthew Knepley 8276d3beeddSMatthew Knepley diag = a->diag; 8286d3beeddSMatthew Knepley idiag = a->idiag; 8296d3beeddSMatthew Knepley ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 8306d3beeddSMatthew Knepley ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 8316d3beeddSMatthew Knepley 8326d3beeddSMatthew Knepley if (flag & SOR_ZERO_INITIAL_GUESS) { 8336d3beeddSMatthew Knepley if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){ 8346d3beeddSMatthew Knepley x[0] = b[0]*idiag[0] + b[1]*idiag[7] + b[2]*idiag[14] + b[3]*idiag[21] + b[4]*idiag[28] + b[5]*idiag[35] + b[6]*idiag[42]; 8356d3beeddSMatthew Knepley x[1] = b[0]*idiag[1] + b[1]*idiag[8] + b[2]*idiag[15] + b[3]*idiag[22] + b[4]*idiag[29] + b[5]*idiag[36] + b[6]*idiag[43]; 8366d3beeddSMatthew Knepley x[2] = b[0]*idiag[2] + b[1]*idiag[9] + b[2]*idiag[16] + b[3]*idiag[23] + b[4]*idiag[30] + b[5]*idiag[37] + b[6]*idiag[44]; 8376d3beeddSMatthew Knepley x[3] = b[0]*idiag[3] + b[1]*idiag[10] + b[2]*idiag[17] + b[3]*idiag[24] + b[4]*idiag[31] + b[5]*idiag[38] + b[6]*idiag[45]; 8386d3beeddSMatthew Knepley x[4] = b[0]*idiag[4] + b[1]*idiag[11] + b[2]*idiag[18] + b[3]*idiag[25] + b[4]*idiag[32] + b[5]*idiag[39] + b[6]*idiag[46]; 8396d3beeddSMatthew Knepley x[5] = b[0]*idiag[5] + b[1]*idiag[12] + b[2]*idiag[19] + b[3]*idiag[26] + b[4]*idiag[33] + b[5]*idiag[40] + b[6]*idiag[47]; 8406d3beeddSMatthew Knepley x[6] = b[0]*idiag[6] + b[1]*idiag[13] + b[2]*idiag[20] + b[3]*idiag[27] + b[4]*idiag[34] + b[5]*idiag[41] + b[6]*idiag[48]; 8416d3beeddSMatthew Knepley i2 = 7; 8426d3beeddSMatthew Knepley idiag += 49; 8436d3beeddSMatthew Knepley for (i=1; i<m; i++) { 8446d3beeddSMatthew Knepley v = aa + 49*ai[i]; 8456d3beeddSMatthew Knepley vi = aj + ai[i]; 8466d3beeddSMatthew Knepley nz = diag[i] - ai[i]; 8476d3beeddSMatthew Knepley s1 = b[i2]; s2 = b[i2+1]; s3 = b[i2+2]; s4 = b[i2+3]; s5 = b[i2+4]; s6 = b[i2+5]; s7 = b[i2+6]; 8486d3beeddSMatthew Knepley while (nz--) { 8496d3beeddSMatthew Knepley idx = 7*(*vi++); 8506d3beeddSMatthew Knepley x1 = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx]; x6 = x[5+idx]; x7 = x[6+idx]; 8516d3beeddSMatthew Knepley s1 -= v[0]*x1 + v[7]*x2 + v[14]*x3 + v[21]*x4 + v[28]*x5 + v[35]*x6 + v[42]*x7; 8526d3beeddSMatthew Knepley s2 -= v[1]*x1 + v[8]*x2 + v[15]*x3 + v[22]*x4 + v[29]*x5 + v[36]*x6 + v[43]*x7; 8536d3beeddSMatthew Knepley s3 -= v[2]*x1 + v[9]*x2 + v[16]*x3 + v[23]*x4 + v[30]*x5 + v[37]*x6 + v[44]*x7; 8546d3beeddSMatthew Knepley s4 -= v[3]*x1 + v[10]*x2 + v[17]*x3 + v[24]*x4 + v[31]*x5 + v[38]*x6 + v[45]*x7; 8556d3beeddSMatthew Knepley s5 -= v[4]*x1 + v[11]*x2 + v[18]*x3 + v[25]*x4 + v[32]*x5 + v[39]*x6 + v[46]*x7; 8566d3beeddSMatthew Knepley s6 -= v[5]*x1 + v[12]*x2 + v[19]*x3 + v[26]*x4 + v[33]*x5 + v[40]*x6 + v[47]*x7; 8576d3beeddSMatthew Knepley s7 -= v[6]*x1 + v[13]*x2 + v[20]*x3 + v[27]*x4 + v[34]*x5 + v[41]*x6 + v[48]*x7; 8586d3beeddSMatthew Knepley v += 49; 8596d3beeddSMatthew Knepley } 8606d3beeddSMatthew Knepley x[i2] = idiag[0]*s1 + idiag[7]*s2 + idiag[14]*s3 + idiag[21]*s4 + idiag[28]*s5 + idiag[35]*s6 + idiag[42]*s7; 8616d3beeddSMatthew Knepley x[i2+1] = idiag[1]*s1 + idiag[8]*s2 + idiag[15]*s3 + idiag[22]*s4 + idiag[29]*s5 + idiag[36]*s6 + idiag[43]*s7; 8626d3beeddSMatthew Knepley x[i2+2] = idiag[2]*s1 + idiag[9]*s2 + idiag[16]*s3 + idiag[23]*s4 + idiag[30]*s5 + idiag[37]*s6 + idiag[44]*s7; 8636d3beeddSMatthew Knepley x[i2+3] = idiag[3]*s1 + idiag[10]*s2 + idiag[17]*s3 + idiag[24]*s4 + idiag[31]*s5 + idiag[38]*s6 + idiag[45]*s7; 8646d3beeddSMatthew Knepley x[i2+4] = idiag[4]*s1 + idiag[11]*s2 + idiag[18]*s3 + idiag[25]*s4 + idiag[32]*s5 + idiag[39]*s6 + idiag[46]*s7; 8656d3beeddSMatthew Knepley x[i2+5] = idiag[5]*s1 + idiag[12]*s2 + idiag[19]*s3 + idiag[26]*s4 + idiag[33]*s5 + idiag[40]*s6 + idiag[47]*s7; 8666d3beeddSMatthew Knepley x[i2+6] = idiag[6]*s1 + idiag[13]*s2 + idiag[20]*s3 + idiag[27]*s4 + idiag[34]*s5 + idiag[41]*s6 + idiag[48]*s7; 8676d3beeddSMatthew Knepley idiag += 49; 8686d3beeddSMatthew Knepley i2 += 7; 8696d3beeddSMatthew Knepley } 8706d3beeddSMatthew Knepley /* for logging purposes assume number of nonzero in lower half is 1/2 of total */ 8716d3beeddSMatthew Knepley ierr = PetscLogFlops(49*(a->nz));CHKERRQ(ierr); 8726d3beeddSMatthew Knepley } 8736d3beeddSMatthew Knepley if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) && 8746d3beeddSMatthew Knepley (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) { 8756d3beeddSMatthew Knepley i2 = 0; 8766d3beeddSMatthew Knepley mdiag = a->idiag+49*a->mbs; 8776d3beeddSMatthew Knepley for (i=0; i<m; i++) { 8786d3beeddSMatthew Knepley x1 = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4]; x6 = x[i2+5]; x7 = x[i2+6]; 8796d3beeddSMatthew Knepley x[i2] = mdiag[0]*x1 + mdiag[7]*x2 + mdiag[14]*x3 + mdiag[21]*x4 + mdiag[28]*x5 + mdiag[35]*x6 + mdiag[35]*x7; 8806d3beeddSMatthew Knepley x[i2+1] = mdiag[1]*x1 + mdiag[8]*x2 + mdiag[15]*x3 + mdiag[22]*x4 + mdiag[29]*x5 + mdiag[36]*x6 + mdiag[36]*x7; 8816d3beeddSMatthew Knepley x[i2+2] = mdiag[2]*x1 + mdiag[9]*x2 + mdiag[16]*x3 + mdiag[23]*x4 + mdiag[30]*x5 + mdiag[37]*x6 + mdiag[37]*x7; 8826d3beeddSMatthew Knepley x[i2+3] = mdiag[3]*x1 + mdiag[10]*x2 + mdiag[17]*x3 + mdiag[24]*x4 + mdiag[31]*x5 + mdiag[38]*x6 + mdiag[38]*x7; 8836d3beeddSMatthew Knepley x[i2+4] = mdiag[4]*x1 + mdiag[11]*x2 + mdiag[18]*x3 + mdiag[25]*x4 + mdiag[32]*x5 + mdiag[39]*x6 + mdiag[39]*x7; 8846d3beeddSMatthew Knepley x[i2+5] = mdiag[5]*x1 + mdiag[12]*x2 + mdiag[19]*x3 + mdiag[26]*x4 + mdiag[33]*x5 + mdiag[40]*x6 + mdiag[40]*x7; 8856d3beeddSMatthew Knepley x[i2+6] = mdiag[6]*x1 + mdiag[13]*x2 + mdiag[20]*x3 + mdiag[27]*x4 + mdiag[34]*x5 + mdiag[41]*x6 + mdiag[41]*x7; 8866d3beeddSMatthew Knepley mdiag += 36; 8876d3beeddSMatthew Knepley i2 += 6; 8886d3beeddSMatthew Knepley } 8896d3beeddSMatthew Knepley ierr = PetscLogFlops(93*m);CHKERRQ(ierr); 8906d3beeddSMatthew Knepley } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) { 8916d3beeddSMatthew Knepley ierr = PetscMemcpy(x,b,A->rmap.N*sizeof(PetscScalar));CHKERRQ(ierr); 8926d3beeddSMatthew Knepley } 8936d3beeddSMatthew Knepley if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){ 8946d3beeddSMatthew Knepley idiag = a->idiag+49*a->mbs - 49; 8956d3beeddSMatthew Knepley i2 = 7*m - 7; 8966d3beeddSMatthew Knepley x1 = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4]; x6 = x[i2+5]; x7 = x[i2+6]; 8976d3beeddSMatthew Knepley x[i2] = idiag[0]*x1 + idiag[7]*x2 + idiag[14]*x3 + idiag[21]*x4 + idiag[28]*x5 + idiag[35]*x6 + idiag[42]*x7; 8986d3beeddSMatthew Knepley x[i2+1] = idiag[1]*x1 + idiag[8]*x2 + idiag[15]*x3 + idiag[22]*x4 + idiag[29]*x5 + idiag[36]*x6 + idiag[43]*x7; 8996d3beeddSMatthew Knepley x[i2+2] = idiag[2]*x1 + idiag[9]*x2 + idiag[16]*x3 + idiag[23]*x4 + idiag[30]*x5 + idiag[37]*x6 + idiag[44]*x7; 9006d3beeddSMatthew Knepley x[i2+3] = idiag[3]*x1 + idiag[10]*x2 + idiag[17]*x3 + idiag[24]*x4 + idiag[31]*x5 + idiag[38]*x6 + idiag[45]*x7; 9016d3beeddSMatthew Knepley x[i2+4] = idiag[4]*x1 + idiag[11]*x2 + idiag[18]*x3 + idiag[25]*x4 + idiag[32]*x5 + idiag[39]*x6 + idiag[46]*x7; 9026d3beeddSMatthew Knepley x[i2+5] = idiag[5]*x1 + idiag[12]*x2 + idiag[19]*x3 + idiag[26]*x4 + idiag[33]*x5 + idiag[40]*x6 + idiag[47]*x7; 9036d3beeddSMatthew Knepley x[i2+6] = idiag[6]*x1 + idiag[13]*x2 + idiag[20]*x3 + idiag[27]*x4 + idiag[34]*x5 + idiag[41]*x6 + idiag[48]*x7; 9046d3beeddSMatthew Knepley idiag -= 49; 9056d3beeddSMatthew Knepley i2 -= 7; 9066d3beeddSMatthew Knepley for (i=m-2; i>=0; i--) { 9076d3beeddSMatthew Knepley v = aa + 49*(diag[i]+1); 9086d3beeddSMatthew Knepley vi = aj + diag[i] + 1; 9096d3beeddSMatthew Knepley nz = ai[i+1] - diag[i] - 1; 9106d3beeddSMatthew Knepley s1 = x[i2]; s2 = x[i2+1]; s3 = x[i2+2]; s4 = x[i2+3]; s5 = x[i2+4]; s6 = x[i2+5]; s7 = x[i2+6]; 9116d3beeddSMatthew Knepley while (nz--) { 9126d3beeddSMatthew Knepley idx = 7*(*vi++); 9136d3beeddSMatthew Knepley x1 = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx]; x6 = x[5+idx]; x7 = x[6+idx]; 9146d3beeddSMatthew Knepley s1 -= v[0]*x1 + v[7]*x2 + v[14]*x3 + v[21]*x4 + v[28]*x5 + v[35]*x6 + v[42]*x7; 9156d3beeddSMatthew Knepley s2 -= v[1]*x1 + v[8]*x2 + v[15]*x3 + v[22]*x4 + v[29]*x5 + v[36]*x6 + v[43]*x7; 9166d3beeddSMatthew Knepley s3 -= v[2]*x1 + v[9]*x2 + v[16]*x3 + v[23]*x4 + v[30]*x5 + v[37]*x6 + v[44]*x7; 9176d3beeddSMatthew Knepley s4 -= v[3]*x1 + v[10]*x2 + v[17]*x3 + v[24]*x4 + v[31]*x5 + v[38]*x6 + v[45]*x7; 9186d3beeddSMatthew Knepley s5 -= v[4]*x1 + v[11]*x2 + v[18]*x3 + v[25]*x4 + v[32]*x5 + v[39]*x6 + v[46]*x7; 9196d3beeddSMatthew Knepley s6 -= v[5]*x1 + v[12]*x2 + v[19]*x3 + v[26]*x4 + v[33]*x5 + v[40]*x6 + v[47]*x7; 9206d3beeddSMatthew Knepley s7 -= v[6]*x1 + v[13]*x2 + v[20]*x3 + v[27]*x4 + v[34]*x5 + v[41]*x6 + v[48]*x7; 9216d3beeddSMatthew Knepley v += 49; 9226d3beeddSMatthew Knepley } 9236d3beeddSMatthew Knepley x[i2] = idiag[0]*s1 + idiag[7]*s2 + idiag[14]*s3 + idiag[21]*s4 + idiag[28]*s5 + idiag[35]*s6 + idiag[42]*s7; 9246d3beeddSMatthew Knepley x[i2+1] = idiag[1]*s1 + idiag[8]*s2 + idiag[15]*s3 + idiag[22]*s4 + idiag[29]*s5 + idiag[36]*s6 + idiag[43]*s7; 9256d3beeddSMatthew Knepley x[i2+2] = idiag[2]*s1 + idiag[9]*s2 + idiag[16]*s3 + idiag[23]*s4 + idiag[30]*s5 + idiag[37]*s6 + idiag[44]*s7; 9266d3beeddSMatthew Knepley x[i2+3] = idiag[3]*s1 + idiag[10]*s2 + idiag[17]*s3 + idiag[24]*s4 + idiag[31]*s5 + idiag[38]*s6 + idiag[45]*s7; 9276d3beeddSMatthew Knepley x[i2+4] = idiag[4]*s1 + idiag[11]*s2 + idiag[18]*s3 + idiag[25]*s4 + idiag[32]*s5 + idiag[39]*s6 + idiag[46]*s7; 9286d3beeddSMatthew Knepley x[i2+5] = idiag[5]*s1 + idiag[12]*s2 + idiag[19]*s3 + idiag[26]*s4 + idiag[33]*s5 + idiag[40]*s6 + idiag[47]*s7; 9296d3beeddSMatthew Knepley x[i2+6] = idiag[6]*s1 + idiag[13]*s2 + idiag[20]*s3 + idiag[27]*s4 + idiag[34]*s5 + idiag[41]*s6 + idiag[48]*s7; 9306d3beeddSMatthew Knepley idiag -= 49; 9316d3beeddSMatthew Knepley i2 -= 7; 9326d3beeddSMatthew Knepley } 9336d3beeddSMatthew Knepley ierr = PetscLogFlops(49*(a->nz));CHKERRQ(ierr); 9346d3beeddSMatthew Knepley } 9356d3beeddSMatthew Knepley } else { 9366d3beeddSMatthew Knepley SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess"); 9376d3beeddSMatthew Knepley } 9386d3beeddSMatthew Knepley ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 9396d3beeddSMatthew Knepley ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 9406d3beeddSMatthew Knepley PetscFunctionReturn(0); 9416d3beeddSMatthew Knepley } 9426d3beeddSMatthew Knepley 943af674e45SBarry Smith /* 94481824310SBarry Smith Special version for direct calls from Fortran (Used in PETSc-fun3d) 945af674e45SBarry Smith */ 946af674e45SBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS) 947af674e45SBarry Smith #define matsetvaluesblocked4_ MATSETVALUESBLOCKED4 948af674e45SBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 949af674e45SBarry Smith #define matsetvaluesblocked4_ matsetvaluesblocked4 950af674e45SBarry Smith #endif 951af674e45SBarry Smith 9529c8c1041SBarry Smith EXTERN_C_BEGIN 953af674e45SBarry Smith #undef __FUNCT__ 954af674e45SBarry Smith #define __FUNCT__ "matsetvaluesblocked4_" 955be1d678aSKris Buschelman void PETSCMAT_DLLEXPORT matsetvaluesblocked4_(Mat *AA,PetscInt *mm,const PetscInt im[],PetscInt *nn,const PetscInt in[],const PetscScalar v[]) 956af674e45SBarry Smith { 957af674e45SBarry Smith Mat A = *AA; 958af674e45SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 959c1ac3661SBarry Smith PetscInt *rp,k,low,high,t,ii,jj,row,nrow,i,col,l,N,m = *mm,n = *nn; 960c1ac3661SBarry Smith PetscInt *ai=a->i,*ailen=a->ilen; 96117ec6a02SBarry Smith PetscInt *aj=a->j,stepval,lastcol = -1; 962f15d580aSBarry Smith const PetscScalar *value = v; 9634bb09213Spetsc MatScalar *ap,*aa = a->a,*bap; 964af674e45SBarry Smith 965af674e45SBarry Smith PetscFunctionBegin; 9667adad957SLisandro Dalcin if (A->rmap.bs != 4) SETERRABORT(((PetscObject)A)->comm,PETSC_ERR_ARG_WRONG,"Can only be called with a block size of 4"); 967af674e45SBarry Smith stepval = (n-1)*4; 968af674e45SBarry Smith for (k=0; k<m; k++) { /* loop over added rows */ 969af674e45SBarry Smith row = im[k]; 970af674e45SBarry Smith rp = aj + ai[row]; 971af674e45SBarry Smith ap = aa + 16*ai[row]; 972af674e45SBarry Smith nrow = ailen[row]; 973af674e45SBarry Smith low = 0; 97417ec6a02SBarry Smith high = nrow; 975af674e45SBarry Smith for (l=0; l<n; l++) { /* loop over added columns */ 976af674e45SBarry Smith col = in[l]; 97717ec6a02SBarry Smith if (col <= lastcol) low = 0; else high = nrow; 97817ec6a02SBarry Smith lastcol = col; 9791e3347e8SBarry Smith value = v + k*(stepval+4 + l)*4; 980af674e45SBarry Smith while (high-low > 7) { 981af674e45SBarry Smith t = (low+high)/2; 982af674e45SBarry Smith if (rp[t] > col) high = t; 983af674e45SBarry Smith else low = t; 984af674e45SBarry Smith } 985af674e45SBarry Smith for (i=low; i<high; i++) { 986af674e45SBarry Smith if (rp[i] > col) break; 987af674e45SBarry Smith if (rp[i] == col) { 988af674e45SBarry Smith bap = ap + 16*i; 989af674e45SBarry Smith for (ii=0; ii<4; ii++,value+=stepval) { 990af674e45SBarry Smith for (jj=ii; jj<16; jj+=4) { 991af674e45SBarry Smith bap[jj] += *value++; 992af674e45SBarry Smith } 993af674e45SBarry Smith } 994af674e45SBarry Smith goto noinsert2; 995af674e45SBarry Smith } 996af674e45SBarry Smith } 997af674e45SBarry Smith N = nrow++ - 1; 99817ec6a02SBarry Smith high++; /* added new column index thus must search to one higher than before */ 999af674e45SBarry Smith /* shift up all the later entries in this row */ 1000af674e45SBarry Smith for (ii=N; ii>=i; ii--) { 1001af674e45SBarry Smith rp[ii+1] = rp[ii]; 1002a037b02bSBarry Smith PetscMemcpy(ap+16*(ii+1),ap+16*(ii),16*sizeof(MatScalar)); 1003af674e45SBarry Smith } 1004af674e45SBarry Smith if (N >= i) { 1005a037b02bSBarry Smith PetscMemzero(ap+16*i,16*sizeof(MatScalar)); 1006af674e45SBarry Smith } 1007af674e45SBarry Smith rp[i] = col; 1008af674e45SBarry Smith bap = ap + 16*i; 1009af674e45SBarry Smith for (ii=0; ii<4; ii++,value+=stepval) { 1010af674e45SBarry Smith for (jj=ii; jj<16; jj+=4) { 1011af674e45SBarry Smith bap[jj] = *value++; 1012af674e45SBarry Smith } 1013af674e45SBarry Smith } 1014af674e45SBarry Smith noinsert2:; 1015af674e45SBarry Smith low = i; 1016af674e45SBarry Smith } 1017af674e45SBarry Smith ailen[row] = nrow; 1018af674e45SBarry Smith } 1019be1d678aSKris Buschelman PetscFunctionReturnVoid(); 1020af674e45SBarry Smith } 10219c8c1041SBarry Smith EXTERN_C_END 1022af674e45SBarry Smith 1023af674e45SBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS) 1024af674e45SBarry Smith #define matsetvalues4_ MATSETVALUES4 1025af674e45SBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 1026af674e45SBarry Smith #define matsetvalues4_ matsetvalues4 1027af674e45SBarry Smith #endif 1028af674e45SBarry Smith 10299c8c1041SBarry Smith EXTERN_C_BEGIN 1030af674e45SBarry Smith #undef __FUNCT__ 1031af674e45SBarry Smith #define __FUNCT__ "MatSetValues4_" 1032be1d678aSKris Buschelman void PETSCMAT_DLLEXPORT matsetvalues4_(Mat *AA,PetscInt *mm,PetscInt *im,PetscInt *nn,PetscInt *in,PetscScalar *v) 1033af674e45SBarry Smith { 1034af674e45SBarry Smith Mat A = *AA; 1035af674e45SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 1036c1ac3661SBarry Smith PetscInt *rp,k,low,high,t,ii,row,nrow,i,col,l,N,n = *nn,m = *mm; 1037c1ac3661SBarry Smith PetscInt *ai=a->i,*ailen=a->ilen; 1038c1ac3661SBarry Smith PetscInt *aj=a->j,brow,bcol; 103917ec6a02SBarry Smith PetscInt ridx,cidx,lastcol = -1; 1040af674e45SBarry Smith MatScalar *ap,value,*aa=a->a,*bap; 1041af674e45SBarry Smith 1042af674e45SBarry Smith PetscFunctionBegin; 1043af674e45SBarry Smith for (k=0; k<m; k++) { /* loop over added rows */ 1044af674e45SBarry Smith row = im[k]; brow = row/4; 1045af674e45SBarry Smith rp = aj + ai[brow]; 1046af674e45SBarry Smith ap = aa + 16*ai[brow]; 1047af674e45SBarry Smith nrow = ailen[brow]; 1048af674e45SBarry Smith low = 0; 104917ec6a02SBarry Smith high = nrow; 1050af674e45SBarry Smith for (l=0; l<n; l++) { /* loop over added columns */ 1051af674e45SBarry Smith col = in[l]; bcol = col/4; 1052af674e45SBarry Smith ridx = row % 4; cidx = col % 4; 1053af674e45SBarry Smith value = v[l + k*n]; 105417ec6a02SBarry Smith if (col <= lastcol) low = 0; else high = nrow; 105517ec6a02SBarry Smith lastcol = col; 1056af674e45SBarry Smith while (high-low > 7) { 1057af674e45SBarry Smith t = (low+high)/2; 1058af674e45SBarry Smith if (rp[t] > bcol) high = t; 1059af674e45SBarry Smith else low = t; 1060af674e45SBarry Smith } 1061af674e45SBarry Smith for (i=low; i<high; i++) { 1062af674e45SBarry Smith if (rp[i] > bcol) break; 1063af674e45SBarry Smith if (rp[i] == bcol) { 1064af674e45SBarry Smith bap = ap + 16*i + 4*cidx + ridx; 1065af674e45SBarry Smith *bap += value; 1066af674e45SBarry Smith goto noinsert1; 1067af674e45SBarry Smith } 1068af674e45SBarry Smith } 1069af674e45SBarry Smith N = nrow++ - 1; 107017ec6a02SBarry Smith high++; /* added new column thus must search to one higher than before */ 1071af674e45SBarry Smith /* shift up all the later entries in this row */ 1072af674e45SBarry Smith for (ii=N; ii>=i; ii--) { 1073af674e45SBarry Smith rp[ii+1] = rp[ii]; 1074a037b02bSBarry Smith PetscMemcpy(ap+16*(ii+1),ap+16*(ii),16*sizeof(MatScalar)); 1075af674e45SBarry Smith } 1076af674e45SBarry Smith if (N>=i) { 1077a037b02bSBarry Smith PetscMemzero(ap+16*i,16*sizeof(MatScalar)); 1078af674e45SBarry Smith } 1079af674e45SBarry Smith rp[i] = bcol; 1080af674e45SBarry Smith ap[16*i + 4*cidx + ridx] = value; 1081af674e45SBarry Smith noinsert1:; 1082af674e45SBarry Smith low = i; 1083af674e45SBarry Smith } 1084af674e45SBarry Smith ailen[brow] = nrow; 1085af674e45SBarry Smith } 1086be1d678aSKris Buschelman PetscFunctionReturnVoid(); 1087af674e45SBarry Smith } 10889c8c1041SBarry Smith EXTERN_C_END 1089af674e45SBarry Smith 1090be5855fcSBarry Smith /* 1091be5855fcSBarry Smith Checks for missing diagonals 1092be5855fcSBarry Smith */ 10934a2ae208SSatish Balay #undef __FUNCT__ 10944a2ae208SSatish Balay #define __FUNCT__ "MatMissingDiagonal_SeqBAIJ" 10952af78befSBarry Smith PetscErrorCode MatMissingDiagonal_SeqBAIJ(Mat A,PetscTruth *missing,PetscInt *d) 1096be5855fcSBarry Smith { 1097be5855fcSBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 10986849ba73SBarry Smith PetscErrorCode ierr; 1099c1ac3661SBarry Smith PetscInt *diag,*jj = a->j,i; 1100be5855fcSBarry Smith 1101be5855fcSBarry Smith PetscFunctionBegin; 1102c4992f7dSBarry Smith ierr = MatMarkDiagonal_SeqBAIJ(A);CHKERRQ(ierr); 11032af78befSBarry Smith *missing = PETSC_FALSE; 1104883fce79SBarry Smith diag = a->diag; 11050e8e8aceSBarry Smith for (i=0; i<a->mbs; i++) { 1106be5855fcSBarry Smith if (jj[diag[i]] != i) { 11072af78befSBarry Smith *missing = PETSC_TRUE; 11082af78befSBarry Smith if (d) *d = i; 1109be5855fcSBarry Smith } 1110be5855fcSBarry Smith } 1111be5855fcSBarry Smith PetscFunctionReturn(0); 1112be5855fcSBarry Smith } 1113be5855fcSBarry Smith 11144a2ae208SSatish Balay #undef __FUNCT__ 11154a2ae208SSatish Balay #define __FUNCT__ "MatMarkDiagonal_SeqBAIJ" 1116dfbe8321SBarry Smith PetscErrorCode MatMarkDiagonal_SeqBAIJ(Mat A) 1117de6a44a3SBarry Smith { 1118de6a44a3SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 11196849ba73SBarry Smith PetscErrorCode ierr; 112009f38230SBarry Smith PetscInt i,j,m = a->mbs; 1121de6a44a3SBarry Smith 11223a40ed3dSBarry Smith PetscFunctionBegin; 112309f38230SBarry Smith if (!a->diag) { 112409f38230SBarry Smith ierr = PetscMalloc(m*sizeof(PetscInt),&a->diag);CHKERRQ(ierr); 112509f38230SBarry Smith } 11267fc0212eSBarry Smith for (i=0; i<m; i++) { 112709f38230SBarry Smith a->diag[i] = a->i[i+1]; 1128de6a44a3SBarry Smith for (j=a->i[i]; j<a->i[i+1]; j++) { 1129de6a44a3SBarry Smith if (a->j[j] == i) { 113009f38230SBarry Smith a->diag[i] = j; 1131de6a44a3SBarry Smith break; 1132de6a44a3SBarry Smith } 1133de6a44a3SBarry Smith } 1134de6a44a3SBarry Smith } 11353a40ed3dSBarry Smith PetscFunctionReturn(0); 1136de6a44a3SBarry Smith } 11372593348eSBarry Smith 11382593348eSBarry Smith 1139690b6cddSBarry Smith EXTERN PetscErrorCode MatToSymmetricIJ_SeqAIJ(PetscInt,PetscInt*,PetscInt*,PetscInt,PetscInt,PetscInt**,PetscInt**); 11403b2fbd54SBarry Smith 11414a2ae208SSatish Balay #undef __FUNCT__ 11424a2ae208SSatish Balay #define __FUNCT__ "MatGetRowIJ_SeqBAIJ" 11438f7157efSSatish Balay static PetscErrorCode MatGetRowIJ_SeqBAIJ(Mat A,PetscInt oshift,PetscTruth symmetric,PetscTruth blockcompressed,PetscInt *nn,PetscInt *ia[],PetscInt *ja[],PetscTruth *done) 11443b2fbd54SBarry Smith { 11453b2fbd54SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 1146dfbe8321SBarry Smith PetscErrorCode ierr; 11479985e31cSBarry Smith PetscInt i,j,n = a->mbs,nz = a->i[n],bs = A->rmap.bs,nbs = 1,k,l,cnt; 11488f7157efSSatish Balay PetscInt *tia, *tja; 11493b2fbd54SBarry Smith 11503a40ed3dSBarry Smith PetscFunctionBegin; 11513b2fbd54SBarry Smith *nn = n; 11523a40ed3dSBarry Smith if (!ia) PetscFunctionReturn(0); 11533b2fbd54SBarry Smith if (symmetric) { 11548f7157efSSatish Balay ierr = MatToSymmetricIJ_SeqAIJ(n,a->i,a->j,0,0,&tia,&tja);CHKERRQ(ierr); 11553b2fbd54SBarry Smith } else { 11568f7157efSSatish Balay tia = a->i; tja = a->j; 11573b2fbd54SBarry Smith } 11583b2fbd54SBarry Smith 1159ecc77c7aSBarry Smith if (!blockcompressed && bs > 1) { 1160ecc77c7aSBarry Smith (*nn) *= bs; 1161ecc77c7aSBarry Smith nbs = bs; 11628f7157efSSatish Balay /* malloc & create the natural set of indices */ 1163ecc77c7aSBarry Smith ierr = PetscMalloc((n+1)*bs*sizeof(PetscInt),ia);CHKERRQ(ierr); 11649985e31cSBarry Smith if (n) { 1165ecc77c7aSBarry Smith (*ia)[0] = 0; 1166ecc77c7aSBarry Smith for (j=1; j<bs; j++) { 1167ecc77c7aSBarry Smith (*ia)[j] = (tia[1]-tia[0])*bs+(*ia)[j-1]; 1168ecc77c7aSBarry Smith } 11699985e31cSBarry Smith } 1170ecc77c7aSBarry Smith 1171ecc77c7aSBarry Smith for (i=1; i<n; i++) { 1172ecc77c7aSBarry Smith (*ia)[i*bs] = (tia[i]-tia[i-1])*bs + (*ia)[i*bs-1]; 1173ecc77c7aSBarry Smith for (j=1; j<bs; j++) { 1174ecc77c7aSBarry Smith (*ia)[i*bs+j] = (tia[i+1]-tia[i])*bs + (*ia)[i*bs+j-1]; 11758f7157efSSatish Balay } 11768f7157efSSatish Balay } 11779985e31cSBarry Smith if (n) { 1178ecc77c7aSBarry Smith (*ia)[n*bs] = (tia[n]-tia[n-1])*bs + (*ia)[n*bs-1]; 11799985e31cSBarry Smith } 1180ecc77c7aSBarry Smith 11819985e31cSBarry Smith if (ja) { 11829985e31cSBarry Smith ierr = PetscMalloc(nz*bs*bs*sizeof(PetscInt),ja);CHKERRQ(ierr); 11839985e31cSBarry Smith cnt = 0; 11849985e31cSBarry Smith for (i=0; i<n; i++) { 11859985e31cSBarry Smith for (j=0; j<bs; j++) { 11869985e31cSBarry Smith for (k=tia[i]; k<tia[i+1]; k++) { 11879985e31cSBarry Smith for (l=0; l<bs; l++) { 11889985e31cSBarry Smith (*ja)[cnt++] = bs*tja[k] + l; 11899985e31cSBarry Smith } 11909985e31cSBarry Smith } 11919985e31cSBarry Smith } 11929985e31cSBarry Smith } 11939985e31cSBarry Smith } 11949985e31cSBarry Smith 1195ecc77c7aSBarry Smith n *= bs; 1196ecc77c7aSBarry Smith nz *= bs*bs; 11978f7157efSSatish Balay if (symmetric) { /* deallocate memory allocated in MatToSymmetricIJ_SeqAIJ() */ 11988f7157efSSatish Balay ierr = PetscFree(tia);CHKERRQ(ierr); 11998f7157efSSatish Balay ierr = PetscFree(tja);CHKERRQ(ierr); 12008f7157efSSatish Balay } 12018f7157efSSatish Balay } else { 12028f7157efSSatish Balay *ia = tia; 1203ecc77c7aSBarry Smith if (ja) *ja = tja; 12048f7157efSSatish Balay } 12058f7157efSSatish Balay if (oshift == 1) { 1206ecc77c7aSBarry Smith for (i=0; i<n+nbs; i++) (*ia)[i]++; 1207ecc77c7aSBarry Smith if (ja) for (i=0; i<nz; i++) (*ja)[i]++; 12088f7157efSSatish Balay } 12093a40ed3dSBarry Smith PetscFunctionReturn(0); 12103b2fbd54SBarry Smith } 12113b2fbd54SBarry Smith 12124a2ae208SSatish Balay #undef __FUNCT__ 12134a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRowIJ_SeqBAIJ" 12148f7157efSSatish Balay static PetscErrorCode MatRestoreRowIJ_SeqBAIJ(Mat A,PetscInt oshift,PetscTruth symmetric,PetscTruth blockcompressed,PetscInt *nn,PetscInt *ia[],PetscInt *ja[],PetscTruth *done) 12153b2fbd54SBarry Smith { 12163b2fbd54SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 12176849ba73SBarry Smith PetscErrorCode ierr; 12188f7157efSSatish Balay PetscInt i,n = a->mbs,nz = a->i[n]; 12193b2fbd54SBarry Smith 12203a40ed3dSBarry Smith PetscFunctionBegin; 12213a40ed3dSBarry Smith if (!ia) PetscFunctionReturn(0); 1222ecc77c7aSBarry Smith if (!blockcompressed && A->rmap.bs > 1) { 1223ecc77c7aSBarry Smith ierr = PetscFree(*ia);CHKERRQ(ierr); 12249985e31cSBarry Smith if (ja) {ierr = PetscFree(*ja);CHKERRQ(ierr);} 12258f7157efSSatish Balay } else if (symmetric) { 1226606d414cSSatish Balay ierr = PetscFree(*ia);CHKERRQ(ierr); 12279985e31cSBarry Smith if (ja) {ierr = PetscFree(*ja);CHKERRQ(ierr);} 12288f7157efSSatish Balay } else if (oshift == 1) { /* blockcompressed */ 12293b2fbd54SBarry Smith for (i=0; i<n+1; i++) a->i[i]--; 12309985e31cSBarry Smith if (ja) {for (i=0; i<nz; i++) a->j[i]--;} 12313b2fbd54SBarry Smith } 12323a40ed3dSBarry Smith PetscFunctionReturn(0); 12333b2fbd54SBarry Smith } 12343b2fbd54SBarry Smith 12354a2ae208SSatish Balay #undef __FUNCT__ 12364a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_SeqBAIJ" 1237dfbe8321SBarry Smith PetscErrorCode MatDestroy_SeqBAIJ(Mat A) 12382d61bbb3SSatish Balay { 12392d61bbb3SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 1240dfbe8321SBarry Smith PetscErrorCode ierr; 12412d61bbb3SSatish Balay 1242433994e6SBarry Smith PetscFunctionBegin; 1243aa482453SBarry Smith #if defined(PETSC_USE_LOG) 1244899cda47SBarry Smith PetscLogObjectState((PetscObject)A,"Rows=%D, Cols=%D, NZ=%D",A->rmap.N,A->cmap.n,a->nz); 12452d61bbb3SSatish Balay #endif 1246e6b907acSBarry Smith ierr = MatSeqXAIJFreeAIJ(A,&a->a,&a->j,&a->i);CHKERRQ(ierr); 1247c38d4ed2SBarry Smith if (a->row) { 1248c38d4ed2SBarry Smith ierr = ISDestroy(a->row);CHKERRQ(ierr); 1249c38d4ed2SBarry Smith } 1250c38d4ed2SBarry Smith if (a->col) { 1251c38d4ed2SBarry Smith ierr = ISDestroy(a->col);CHKERRQ(ierr); 1252c38d4ed2SBarry Smith } 125305b42c5fSBarry Smith ierr = PetscFree(a->diag);CHKERRQ(ierr); 125405b42c5fSBarry Smith ierr = PetscFree(a->idiag);CHKERRQ(ierr); 125505b42c5fSBarry Smith ierr = PetscFree2(a->imax,a->ilen);CHKERRQ(ierr); 125605b42c5fSBarry Smith ierr = PetscFree(a->solve_work);CHKERRQ(ierr); 125705b42c5fSBarry Smith ierr = PetscFree(a->mult_work);CHKERRQ(ierr); 1258e51c0b9cSSatish Balay if (a->icol) {ierr = ISDestroy(a->icol);CHKERRQ(ierr);} 125905b42c5fSBarry Smith ierr = PetscFree(a->saved_values);CHKERRQ(ierr); 126005b42c5fSBarry Smith ierr = PetscFree(a->xtoy);CHKERRQ(ierr); 126173e7a558SHong Zhang if (a->compressedrow.use){ierr = PetscFree(a->compressedrow.i);} 1262c4319e64SHong Zhang 1263606d414cSSatish Balay ierr = PetscFree(a);CHKERRQ(ierr); 1264901853e0SKris Buschelman 1265dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)A,0);CHKERRQ(ierr); 126643516a2dSKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqBAIJInvertBlockDiagonal_C","",PETSC_NULL);CHKERRQ(ierr); 1267901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)A,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 1268901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)A,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 1269901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqBAIJSetColumnIndices_C","",PETSC_NULL);CHKERRQ(ierr); 1270901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqbaij_seqaij_C","",PETSC_NULL);CHKERRQ(ierr); 1271901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqbaij_seqsbaij_C","",PETSC_NULL);CHKERRQ(ierr); 1272901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 12732d61bbb3SSatish Balay PetscFunctionReturn(0); 12742d61bbb3SSatish Balay } 12752d61bbb3SSatish Balay 12764a2ae208SSatish Balay #undef __FUNCT__ 12774a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_SeqBAIJ" 12784e0d8c25SBarry Smith PetscErrorCode MatSetOption_SeqBAIJ(Mat A,MatOption op,PetscTruth flg) 12792d61bbb3SSatish Balay { 12802d61bbb3SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 128163ba0a88SBarry Smith PetscErrorCode ierr; 12822d61bbb3SSatish Balay 12832d61bbb3SSatish Balay PetscFunctionBegin; 1284aa275fccSKris Buschelman switch (op) { 1285aa275fccSKris Buschelman case MAT_ROW_ORIENTED: 12864e0d8c25SBarry Smith a->roworiented = flg; 1287aa275fccSKris Buschelman break; 1288aa275fccSKris Buschelman case MAT_KEEP_ZEROED_ROWS: 12894e0d8c25SBarry Smith a->keepzeroedrows = flg; 1290aa275fccSKris Buschelman break; 1291512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 1292512a5fc5SBarry Smith a->nonew = (flg ? 0 : 1); 1293aa275fccSKris Buschelman break; 1294aa275fccSKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 12954e0d8c25SBarry Smith a->nonew = (flg ? -1 : 0); 1296aa275fccSKris Buschelman break; 1297aa275fccSKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 12984e0d8c25SBarry Smith a->nonew = (flg ? -2 : 0); 1299aa275fccSKris Buschelman break; 13004e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1301aa275fccSKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 1302aa275fccSKris Buschelman case MAT_USE_HASH_TABLE: 1303290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 1304aa275fccSKris Buschelman break; 130577e54ba9SKris Buschelman case MAT_SYMMETRIC: 130677e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 13079a4540c5SBarry Smith case MAT_HERMITIAN: 13089a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 1309290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 131077e54ba9SKris Buschelman break; 1311aa275fccSKris Buschelman default: 1312ad86a440SBarry Smith SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op); 13132d61bbb3SSatish Balay } 13142d61bbb3SSatish Balay PetscFunctionReturn(0); 13152d61bbb3SSatish Balay } 13162d61bbb3SSatish Balay 13174a2ae208SSatish Balay #undef __FUNCT__ 13184a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_SeqBAIJ" 1319c1ac3661SBarry Smith PetscErrorCode MatGetRow_SeqBAIJ(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 13202d61bbb3SSatish Balay { 13212d61bbb3SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 13226849ba73SBarry Smith PetscErrorCode ierr; 1323c1ac3661SBarry Smith PetscInt itmp,i,j,k,M,*ai,*aj,bs,bn,bp,*idx_i,bs2; 13243f1db9ecSBarry Smith MatScalar *aa,*aa_i; 132587828ca2SBarry Smith PetscScalar *v_i; 13262d61bbb3SSatish Balay 13272d61bbb3SSatish Balay PetscFunctionBegin; 1328899cda47SBarry Smith bs = A->rmap.bs; 13292d61bbb3SSatish Balay ai = a->i; 13302d61bbb3SSatish Balay aj = a->j; 13312d61bbb3SSatish Balay aa = a->a; 13322d61bbb3SSatish Balay bs2 = a->bs2; 13332d61bbb3SSatish Balay 1334899cda47SBarry Smith if (row < 0 || row >= A->rmap.N) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Row %D out of range", row); 13352d61bbb3SSatish Balay 13362d61bbb3SSatish Balay bn = row/bs; /* Block number */ 13372d61bbb3SSatish Balay bp = row % bs; /* Block Position */ 13382d61bbb3SSatish Balay M = ai[bn+1] - ai[bn]; 13392d61bbb3SSatish Balay *nz = bs*M; 13402d61bbb3SSatish Balay 13412d61bbb3SSatish Balay if (v) { 13422d61bbb3SSatish Balay *v = 0; 13432d61bbb3SSatish Balay if (*nz) { 134487828ca2SBarry Smith ierr = PetscMalloc((*nz)*sizeof(PetscScalar),v);CHKERRQ(ierr); 13452d61bbb3SSatish Balay for (i=0; i<M; i++) { /* for each block in the block row */ 13462d61bbb3SSatish Balay v_i = *v + i*bs; 13472d61bbb3SSatish Balay aa_i = aa + bs2*(ai[bn] + i); 13482d61bbb3SSatish Balay for (j=bp,k=0; j<bs2; j+=bs,k++) {v_i[k] = aa_i[j];} 13492d61bbb3SSatish Balay } 13502d61bbb3SSatish Balay } 13512d61bbb3SSatish Balay } 13522d61bbb3SSatish Balay 13532d61bbb3SSatish Balay if (idx) { 13542d61bbb3SSatish Balay *idx = 0; 13552d61bbb3SSatish Balay if (*nz) { 1356c1ac3661SBarry Smith ierr = PetscMalloc((*nz)*sizeof(PetscInt),idx);CHKERRQ(ierr); 13572d61bbb3SSatish Balay for (i=0; i<M; i++) { /* for each block in the block row */ 13582d61bbb3SSatish Balay idx_i = *idx + i*bs; 13592d61bbb3SSatish Balay itmp = bs*aj[ai[bn] + i]; 13602d61bbb3SSatish Balay for (j=0; j<bs; j++) {idx_i[j] = itmp++;} 13612d61bbb3SSatish Balay } 13622d61bbb3SSatish Balay } 13632d61bbb3SSatish Balay } 13642d61bbb3SSatish Balay PetscFunctionReturn(0); 13652d61bbb3SSatish Balay } 13662d61bbb3SSatish Balay 13674a2ae208SSatish Balay #undef __FUNCT__ 13684a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_SeqBAIJ" 1369c1ac3661SBarry Smith PetscErrorCode MatRestoreRow_SeqBAIJ(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 13702d61bbb3SSatish Balay { 1371dfbe8321SBarry Smith PetscErrorCode ierr; 1372606d414cSSatish Balay 13732d61bbb3SSatish Balay PetscFunctionBegin; 137405b42c5fSBarry Smith if (idx) {ierr = PetscFree(*idx);CHKERRQ(ierr);} 137505b42c5fSBarry Smith if (v) {ierr = PetscFree(*v);CHKERRQ(ierr);} 13762d61bbb3SSatish Balay PetscFunctionReturn(0); 13772d61bbb3SSatish Balay } 13782d61bbb3SSatish Balay 13794a2ae208SSatish Balay #undef __FUNCT__ 13804a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_SeqBAIJ" 1381*fc4dec0aSBarry Smith PetscErrorCode MatTranspose_SeqBAIJ(Mat A,MatReuse reuse,Mat *B) 13822d61bbb3SSatish Balay { 13832d61bbb3SSatish Balay Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data; 13842d61bbb3SSatish Balay Mat C; 13856849ba73SBarry Smith PetscErrorCode ierr; 1386899cda47SBarry Smith PetscInt i,j,k,*aj=a->j,*ai=a->i,bs=A->rmap.bs,mbs=a->mbs,nbs=a->nbs,len,*col; 1387c1ac3661SBarry Smith PetscInt *rows,*cols,bs2=a->bs2; 1388dd6ea824SBarry Smith MatScalar *array; 13892d61bbb3SSatish Balay 13902d61bbb3SSatish Balay PetscFunctionBegin; 139129bbc08cSBarry Smith if (!B && mbs!=nbs) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Square matrix only for in-place"); 1392*fc4dec0aSBarry Smith 1393*fc4dec0aSBarry Smith if (reuse == MAT_INITIAL_MATRIX || A == *B) { 1394c1ac3661SBarry Smith ierr = PetscMalloc((1+nbs)*sizeof(PetscInt),&col);CHKERRQ(ierr); 1395c1ac3661SBarry Smith ierr = PetscMemzero(col,(1+nbs)*sizeof(PetscInt));CHKERRQ(ierr); 13962d61bbb3SSatish Balay 13972d61bbb3SSatish Balay for (i=0; i<ai[mbs]; i++) col[aj[i]] += 1; 13987adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)A)->comm,&C);CHKERRQ(ierr); 1399899cda47SBarry Smith ierr = MatSetSizes(C,A->cmap.n,A->rmap.N,A->cmap.n,A->rmap.N);CHKERRQ(ierr); 14007adad957SLisandro Dalcin ierr = MatSetType(C,((PetscObject)A)->type_name);CHKERRQ(ierr); 1401ab93d7beSBarry Smith ierr = MatSeqBAIJSetPreallocation_SeqBAIJ(C,bs,PETSC_NULL,col);CHKERRQ(ierr); 1402606d414cSSatish Balay ierr = PetscFree(col);CHKERRQ(ierr); 1403*fc4dec0aSBarry Smith } else { 1404*fc4dec0aSBarry Smith C = *B; 1405*fc4dec0aSBarry Smith } 1406*fc4dec0aSBarry Smith 1407*fc4dec0aSBarry Smith array = a->a; 1408c1ac3661SBarry Smith ierr = PetscMalloc(2*bs*sizeof(PetscInt),&rows);CHKERRQ(ierr); 14092d61bbb3SSatish Balay cols = rows + bs; 14102d61bbb3SSatish Balay for (i=0; i<mbs; i++) { 14112d61bbb3SSatish Balay cols[0] = i*bs; 14122d61bbb3SSatish Balay for (k=1; k<bs; k++) cols[k] = cols[k-1] + 1; 14132d61bbb3SSatish Balay len = ai[i+1] - ai[i]; 14142d61bbb3SSatish Balay for (j=0; j<len; j++) { 14152d61bbb3SSatish Balay rows[0] = (*aj++)*bs; 14162d61bbb3SSatish Balay for (k=1; k<bs; k++) rows[k] = rows[k-1] + 1; 14172d61bbb3SSatish Balay ierr = MatSetValues(C,bs,rows,bs,cols,array,INSERT_VALUES);CHKERRQ(ierr); 14182d61bbb3SSatish Balay array += bs2; 14192d61bbb3SSatish Balay } 14202d61bbb3SSatish Balay } 1421606d414cSSatish Balay ierr = PetscFree(rows);CHKERRQ(ierr); 14222d61bbb3SSatish Balay 14232d61bbb3SSatish Balay ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 14242d61bbb3SSatish Balay ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 14252d61bbb3SSatish Balay 1426*fc4dec0aSBarry Smith if (*B != A) { 14272d61bbb3SSatish Balay *B = C; 14282d61bbb3SSatish Balay } else { 1429273d9f13SBarry Smith ierr = MatHeaderCopy(A,C);CHKERRQ(ierr); 14302d61bbb3SSatish Balay } 14312d61bbb3SSatish Balay PetscFunctionReturn(0); 14322d61bbb3SSatish Balay } 14332d61bbb3SSatish Balay 14344a2ae208SSatish Balay #undef __FUNCT__ 14354a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqBAIJ_Binary" 14366849ba73SBarry Smith static PetscErrorCode MatView_SeqBAIJ_Binary(Mat A,PetscViewer viewer) 14372593348eSBarry Smith { 1438b6490206SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 14396849ba73SBarry Smith PetscErrorCode ierr; 1440899cda47SBarry Smith PetscInt i,*col_lens,bs = A->rmap.bs,count,*jj,j,k,l,bs2=a->bs2; 1441b24ad042SBarry Smith int fd; 144287828ca2SBarry Smith PetscScalar *aa; 1443ce6f0cecSBarry Smith FILE *file; 14442593348eSBarry Smith 14453a40ed3dSBarry Smith PetscFunctionBegin; 1446b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 1447899cda47SBarry Smith ierr = PetscMalloc((4+A->rmap.N)*sizeof(PetscInt),&col_lens);CHKERRQ(ierr); 1448552e946dSBarry Smith col_lens[0] = MAT_FILE_COOKIE; 14493b2fbd54SBarry Smith 1450899cda47SBarry Smith col_lens[1] = A->rmap.N; 1451899cda47SBarry Smith col_lens[2] = A->cmap.n; 14527e67e3f9SSatish Balay col_lens[3] = a->nz*bs2; 14532593348eSBarry Smith 14542593348eSBarry Smith /* store lengths of each row and write (including header) to file */ 1455b6490206SBarry Smith count = 0; 1456b6490206SBarry Smith for (i=0; i<a->mbs; i++) { 1457b6490206SBarry Smith for (j=0; j<bs; j++) { 1458b6490206SBarry Smith col_lens[4+count++] = bs*(a->i[i+1] - a->i[i]); 1459b6490206SBarry Smith } 14602593348eSBarry Smith } 1461899cda47SBarry Smith ierr = PetscBinaryWrite(fd,col_lens,4+A->rmap.N,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 1462606d414cSSatish Balay ierr = PetscFree(col_lens);CHKERRQ(ierr); 14632593348eSBarry Smith 14642593348eSBarry Smith /* store column indices (zero start index) */ 1465c1ac3661SBarry Smith ierr = PetscMalloc((a->nz+1)*bs2*sizeof(PetscInt),&jj);CHKERRQ(ierr); 1466b6490206SBarry Smith count = 0; 1467b6490206SBarry Smith for (i=0; i<a->mbs; i++) { 1468b6490206SBarry Smith for (j=0; j<bs; j++) { 1469b6490206SBarry Smith for (k=a->i[i]; k<a->i[i+1]; k++) { 1470b6490206SBarry Smith for (l=0; l<bs; l++) { 1471b6490206SBarry Smith jj[count++] = bs*a->j[k] + l; 14722593348eSBarry Smith } 14732593348eSBarry Smith } 1474b6490206SBarry Smith } 1475b6490206SBarry Smith } 14766f69ff64SBarry Smith ierr = PetscBinaryWrite(fd,jj,bs2*a->nz,PETSC_INT,PETSC_FALSE);CHKERRQ(ierr); 1477606d414cSSatish Balay ierr = PetscFree(jj);CHKERRQ(ierr); 14782593348eSBarry Smith 14792593348eSBarry Smith /* store nonzero values */ 148087828ca2SBarry Smith ierr = PetscMalloc((a->nz+1)*bs2*sizeof(PetscScalar),&aa);CHKERRQ(ierr); 1481b6490206SBarry Smith count = 0; 1482b6490206SBarry Smith for (i=0; i<a->mbs; i++) { 1483b6490206SBarry Smith for (j=0; j<bs; j++) { 1484b6490206SBarry Smith for (k=a->i[i]; k<a->i[i+1]; k++) { 1485b6490206SBarry Smith for (l=0; l<bs; l++) { 14867e67e3f9SSatish Balay aa[count++] = a->a[bs2*k + l*bs + j]; 1487b6490206SBarry Smith } 1488b6490206SBarry Smith } 1489b6490206SBarry Smith } 1490b6490206SBarry Smith } 14916f69ff64SBarry Smith ierr = PetscBinaryWrite(fd,aa,bs2*a->nz,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr); 1492606d414cSSatish Balay ierr = PetscFree(aa);CHKERRQ(ierr); 1493ce6f0cecSBarry Smith 1494b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetInfoPointer(viewer,&file);CHKERRQ(ierr); 1495ce6f0cecSBarry Smith if (file) { 1496899cda47SBarry Smith fprintf(file,"-matload_block_size %d\n",(int)A->rmap.bs); 1497ce6f0cecSBarry Smith } 14983a40ed3dSBarry Smith PetscFunctionReturn(0); 14992593348eSBarry Smith } 15002593348eSBarry Smith 15014a2ae208SSatish Balay #undef __FUNCT__ 15024a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqBAIJ_ASCII" 15036849ba73SBarry Smith static PetscErrorCode MatView_SeqBAIJ_ASCII(Mat A,PetscViewer viewer) 15042593348eSBarry Smith { 1505b6490206SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 1506dfbe8321SBarry Smith PetscErrorCode ierr; 1507899cda47SBarry Smith PetscInt i,j,bs = A->rmap.bs,k,l,bs2=a->bs2; 1508f3ef73ceSBarry Smith PetscViewerFormat format; 15092593348eSBarry Smith 15103a40ed3dSBarry Smith PetscFunctionBegin; 1511b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 1512456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 151377431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 1514fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_MATLAB) { 1515bcd9e38bSBarry Smith Mat aij; 1516ceb03754SKris Buschelman ierr = MatConvert(A,MATSEQAIJ,MAT_INITIAL_MATRIX,&aij);CHKERRQ(ierr); 1517bcd9e38bSBarry Smith ierr = MatView(aij,viewer);CHKERRQ(ierr); 1518bcd9e38bSBarry Smith ierr = MatDestroy(aij);CHKERRQ(ierr); 151904929863SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 152004929863SHong Zhang PetscFunctionReturn(0); 1521fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_COMMON) { 1522b0a32e0cSBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_NO);CHKERRQ(ierr); 152344cd7ae7SLois Curfman McInnes for (i=0; i<a->mbs; i++) { 152444cd7ae7SLois Curfman McInnes for (j=0; j<bs; j++) { 152577431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i*bs+j);CHKERRQ(ierr); 152644cd7ae7SLois Curfman McInnes for (k=a->i[i]; k<a->i[i+1]; k++) { 152744cd7ae7SLois Curfman McInnes for (l=0; l<bs; l++) { 1528aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 15290e6d2581SBarry Smith if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) > 0.0 && PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) { 1530a83599f4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %G + %Gi) ",bs*a->j[k]+l, 15310e6d2581SBarry Smith PetscRealPart(a->a[bs2*k + l*bs + j]),PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 15320e6d2581SBarry Smith } else if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) < 0.0 && PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) { 1533a83599f4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %G - %Gi) ",bs*a->j[k]+l, 15340e6d2581SBarry Smith PetscRealPart(a->a[bs2*k + l*bs + j]),-PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 15350e6d2581SBarry Smith } else if (PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) { 1536a83599f4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %G) ",bs*a->j[k]+l,PetscRealPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 15370ef38995SBarry Smith } 153844cd7ae7SLois Curfman McInnes #else 15390ef38995SBarry Smith if (a->a[bs2*k + l*bs + j] != 0.0) { 1540a83599f4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %G) ",bs*a->j[k]+l,a->a[bs2*k + l*bs + j]);CHKERRQ(ierr); 15410ef38995SBarry Smith } 154244cd7ae7SLois Curfman McInnes #endif 154344cd7ae7SLois Curfman McInnes } 154444cd7ae7SLois Curfman McInnes } 1545b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 154644cd7ae7SLois Curfman McInnes } 154744cd7ae7SLois Curfman McInnes } 1548b0a32e0cSBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_YES);CHKERRQ(ierr); 15490ef38995SBarry Smith } else { 1550b0a32e0cSBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_NO);CHKERRQ(ierr); 1551b6490206SBarry Smith for (i=0; i<a->mbs; i++) { 1552b6490206SBarry Smith for (j=0; j<bs; j++) { 155377431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i*bs+j);CHKERRQ(ierr); 1554b6490206SBarry Smith for (k=a->i[i]; k<a->i[i+1]; k++) { 1555b6490206SBarry Smith for (l=0; l<bs; l++) { 1556aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 15570e6d2581SBarry Smith if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) > 0.0) { 1558a83599f4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %G + %G i) ",bs*a->j[k]+l, 15590e6d2581SBarry Smith PetscRealPart(a->a[bs2*k + l*bs + j]),PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 15600e6d2581SBarry Smith } else if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) < 0.0) { 1561a83599f4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %G - %G i) ",bs*a->j[k]+l, 15620e6d2581SBarry Smith PetscRealPart(a->a[bs2*k + l*bs + j]),-PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 15630ef38995SBarry Smith } else { 1564a83599f4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %G) ",bs*a->j[k]+l,PetscRealPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 156588685aaeSLois Curfman McInnes } 156688685aaeSLois Curfman McInnes #else 1567a83599f4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," (%D, %G) ",bs*a->j[k]+l,a->a[bs2*k + l*bs + j]);CHKERRQ(ierr); 156888685aaeSLois Curfman McInnes #endif 15692593348eSBarry Smith } 15702593348eSBarry Smith } 1571b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 15722593348eSBarry Smith } 15732593348eSBarry Smith } 1574b0a32e0cSBarry Smith ierr = PetscViewerASCIIUseTabs(viewer,PETSC_YES);CHKERRQ(ierr); 1575b6490206SBarry Smith } 1576b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 15773a40ed3dSBarry Smith PetscFunctionReturn(0); 15782593348eSBarry Smith } 15792593348eSBarry Smith 15804a2ae208SSatish Balay #undef __FUNCT__ 15814a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqBAIJ_Draw_Zoom" 15826849ba73SBarry Smith static PetscErrorCode MatView_SeqBAIJ_Draw_Zoom(PetscDraw draw,void *Aa) 15833270192aSSatish Balay { 158477ed5343SBarry Smith Mat A = (Mat) Aa; 15853270192aSSatish Balay Mat_SeqBAIJ *a=(Mat_SeqBAIJ*)A->data; 15866849ba73SBarry Smith PetscErrorCode ierr; 1587899cda47SBarry Smith PetscInt row,i,j,k,l,mbs=a->mbs,color,bs=A->rmap.bs,bs2=a->bs2; 15880e6d2581SBarry Smith PetscReal xl,yl,xr,yr,x_l,x_r,y_l,y_r; 15893f1db9ecSBarry Smith MatScalar *aa; 1590b0a32e0cSBarry Smith PetscViewer viewer; 15913270192aSSatish Balay 15923a40ed3dSBarry Smith PetscFunctionBegin; 15933270192aSSatish Balay 1594b65db4caSBarry Smith /* still need to add support for contour plot of nonzeros; see MatView_SeqAIJ_Draw_Zoom()*/ 159577ed5343SBarry Smith ierr = PetscObjectQuery((PetscObject)A,"Zoomviewer",(PetscObject*)&viewer);CHKERRQ(ierr); 159677ed5343SBarry Smith 1597b0a32e0cSBarry Smith ierr = PetscDrawGetCoordinates(draw,&xl,&yl,&xr,&yr);CHKERRQ(ierr); 159877ed5343SBarry Smith 15993270192aSSatish Balay /* loop over matrix elements drawing boxes */ 1600b0a32e0cSBarry Smith color = PETSC_DRAW_BLUE; 16013270192aSSatish Balay for (i=0,row=0; i<mbs; i++,row+=bs) { 16023270192aSSatish Balay for (j=a->i[i]; j<a->i[i+1]; j++) { 1603899cda47SBarry Smith y_l = A->rmap.N - row - 1.0; y_r = y_l + 1.0; 16043270192aSSatish Balay x_l = a->j[j]*bs; x_r = x_l + 1.0; 16053270192aSSatish Balay aa = a->a + j*bs2; 16063270192aSSatish Balay for (k=0; k<bs; k++) { 16073270192aSSatish Balay for (l=0; l<bs; l++) { 16080e6d2581SBarry Smith if (PetscRealPart(*aa++) >= 0.) continue; 1609b0a32e0cSBarry Smith ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr); 16103270192aSSatish Balay } 16113270192aSSatish Balay } 16123270192aSSatish Balay } 16133270192aSSatish Balay } 1614b0a32e0cSBarry Smith color = PETSC_DRAW_CYAN; 16153270192aSSatish Balay for (i=0,row=0; i<mbs; i++,row+=bs) { 16163270192aSSatish Balay for (j=a->i[i]; j<a->i[i+1]; j++) { 1617899cda47SBarry Smith y_l = A->rmap.N - row - 1.0; y_r = y_l + 1.0; 16183270192aSSatish Balay x_l = a->j[j]*bs; x_r = x_l + 1.0; 16193270192aSSatish Balay aa = a->a + j*bs2; 16203270192aSSatish Balay for (k=0; k<bs; k++) { 16213270192aSSatish Balay for (l=0; l<bs; l++) { 16220e6d2581SBarry Smith if (PetscRealPart(*aa++) != 0.) continue; 1623b0a32e0cSBarry Smith ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr); 16243270192aSSatish Balay } 16253270192aSSatish Balay } 16263270192aSSatish Balay } 16273270192aSSatish Balay } 16283270192aSSatish Balay 1629b0a32e0cSBarry Smith color = PETSC_DRAW_RED; 16303270192aSSatish Balay for (i=0,row=0; i<mbs; i++,row+=bs) { 16313270192aSSatish Balay for (j=a->i[i]; j<a->i[i+1]; j++) { 1632899cda47SBarry Smith y_l = A->rmap.N - row - 1.0; y_r = y_l + 1.0; 16333270192aSSatish Balay x_l = a->j[j]*bs; x_r = x_l + 1.0; 16343270192aSSatish Balay aa = a->a + j*bs2; 16353270192aSSatish Balay for (k=0; k<bs; k++) { 16363270192aSSatish Balay for (l=0; l<bs; l++) { 16370e6d2581SBarry Smith if (PetscRealPart(*aa++) <= 0.) continue; 1638b0a32e0cSBarry Smith ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr); 16393270192aSSatish Balay } 16403270192aSSatish Balay } 16413270192aSSatish Balay } 16423270192aSSatish Balay } 164377ed5343SBarry Smith PetscFunctionReturn(0); 164477ed5343SBarry Smith } 16453270192aSSatish Balay 16464a2ae208SSatish Balay #undef __FUNCT__ 16474a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqBAIJ_Draw" 16486849ba73SBarry Smith static PetscErrorCode MatView_SeqBAIJ_Draw(Mat A,PetscViewer viewer) 164977ed5343SBarry Smith { 1650dfbe8321SBarry Smith PetscErrorCode ierr; 16510e6d2581SBarry Smith PetscReal xl,yl,xr,yr,w,h; 1652b0a32e0cSBarry Smith PetscDraw draw; 165377ed5343SBarry Smith PetscTruth isnull; 16543270192aSSatish Balay 165577ed5343SBarry Smith PetscFunctionBegin; 165677ed5343SBarry Smith 1657b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 1658b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 165977ed5343SBarry Smith 166077ed5343SBarry Smith ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",(PetscObject)viewer);CHKERRQ(ierr); 1661899cda47SBarry Smith xr = A->cmap.n; yr = A->rmap.N; h = yr/10.0; w = xr/10.0; 166277ed5343SBarry Smith xr += w; yr += h; xl = -w; yl = -h; 1663b0a32e0cSBarry Smith ierr = PetscDrawSetCoordinates(draw,xl,yl,xr,yr);CHKERRQ(ierr); 1664b0a32e0cSBarry Smith ierr = PetscDrawZoom(draw,MatView_SeqBAIJ_Draw_Zoom,A);CHKERRQ(ierr); 166577ed5343SBarry Smith ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",PETSC_NULL);CHKERRQ(ierr); 16663a40ed3dSBarry Smith PetscFunctionReturn(0); 16673270192aSSatish Balay } 16683270192aSSatish Balay 16694a2ae208SSatish Balay #undef __FUNCT__ 16704a2ae208SSatish Balay #define __FUNCT__ "MatView_SeqBAIJ" 1671dfbe8321SBarry Smith PetscErrorCode MatView_SeqBAIJ(Mat A,PetscViewer viewer) 16722593348eSBarry Smith { 1673dfbe8321SBarry Smith PetscErrorCode ierr; 167432077d6dSBarry Smith PetscTruth iascii,isbinary,isdraw; 16752593348eSBarry Smith 16763a40ed3dSBarry Smith PetscFunctionBegin; 167732077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 1678fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 1679fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 168032077d6dSBarry Smith if (iascii){ 16813a40ed3dSBarry Smith ierr = MatView_SeqBAIJ_ASCII(A,viewer);CHKERRQ(ierr); 16820f5bd95cSBarry Smith } else if (isbinary) { 16833a40ed3dSBarry Smith ierr = MatView_SeqBAIJ_Binary(A,viewer);CHKERRQ(ierr); 16840f5bd95cSBarry Smith } else if (isdraw) { 16853a40ed3dSBarry Smith ierr = MatView_SeqBAIJ_Draw(A,viewer);CHKERRQ(ierr); 16865cd90555SBarry Smith } else { 1687a5e6ed63SBarry Smith Mat B; 1688ceb03754SKris Buschelman ierr = MatConvert(A,MATSEQAIJ,MAT_INITIAL_MATRIX,&B);CHKERRQ(ierr); 1689a5e6ed63SBarry Smith ierr = MatView(B,viewer);CHKERRQ(ierr); 1690a5e6ed63SBarry Smith ierr = MatDestroy(B);CHKERRQ(ierr); 16912593348eSBarry Smith } 16923a40ed3dSBarry Smith PetscFunctionReturn(0); 16932593348eSBarry Smith } 1694b6490206SBarry Smith 1695cd0e1443SSatish Balay 16964a2ae208SSatish Balay #undef __FUNCT__ 16974a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_SeqBAIJ" 1698c1ac3661SBarry Smith PetscErrorCode MatGetValues_SeqBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],PetscScalar v[]) 1699cd0e1443SSatish Balay { 1700cd0e1443SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 1701c1ac3661SBarry Smith PetscInt *rp,k,low,high,t,row,nrow,i,col,l,*aj = a->j; 1702c1ac3661SBarry Smith PetscInt *ai = a->i,*ailen = a->ilen; 1703899cda47SBarry Smith PetscInt brow,bcol,ridx,cidx,bs=A->rmap.bs,bs2=a->bs2; 170497e567efSBarry Smith MatScalar *ap,*aa = a->a; 1705cd0e1443SSatish Balay 17063a40ed3dSBarry Smith PetscFunctionBegin; 17072d61bbb3SSatish Balay for (k=0; k<m; k++) { /* loop over rows */ 1708cd0e1443SSatish Balay row = im[k]; brow = row/bs; 170997e567efSBarry Smith if (row < 0) {v += n; continue;} /* SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); */ 1710899cda47SBarry Smith if (row >= A->rmap.N) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Row %D too large", row); 17112d61bbb3SSatish Balay rp = aj + ai[brow] ; ap = aa + bs2*ai[brow] ; 17122c3acbe9SBarry Smith nrow = ailen[brow]; 17132d61bbb3SSatish Balay for (l=0; l<n; l++) { /* loop over columns */ 171497e567efSBarry Smith if (in[l] < 0) {v++; continue;} /* SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); */ 1715899cda47SBarry Smith if (in[l] >= A->cmap.n) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Column %D too large", in[l]); 17162d61bbb3SSatish Balay col = in[l] ; 17172d61bbb3SSatish Balay bcol = col/bs; 17182d61bbb3SSatish Balay cidx = col%bs; 17192d61bbb3SSatish Balay ridx = row%bs; 17202d61bbb3SSatish Balay high = nrow; 17212d61bbb3SSatish Balay low = 0; /* assume unsorted */ 17222d61bbb3SSatish Balay while (high-low > 5) { 1723cd0e1443SSatish Balay t = (low+high)/2; 1724cd0e1443SSatish Balay if (rp[t] > bcol) high = t; 1725cd0e1443SSatish Balay else low = t; 1726cd0e1443SSatish Balay } 1727cd0e1443SSatish Balay for (i=low; i<high; i++) { 1728cd0e1443SSatish Balay if (rp[i] > bcol) break; 1729cd0e1443SSatish Balay if (rp[i] == bcol) { 17302d61bbb3SSatish Balay *v++ = ap[bs2*i+bs*cidx+ridx]; 17312d61bbb3SSatish Balay goto finished; 1732cd0e1443SSatish Balay } 1733cd0e1443SSatish Balay } 173497e567efSBarry Smith *v++ = 0.0; 17352d61bbb3SSatish Balay finished:; 1736cd0e1443SSatish Balay } 1737cd0e1443SSatish Balay } 17383a40ed3dSBarry Smith PetscFunctionReturn(0); 1739cd0e1443SSatish Balay } 1740cd0e1443SSatish Balay 174197e5c40aSBarry Smith #define CHUNKSIZE 10 17424a2ae208SSatish Balay #undef __FUNCT__ 17434a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_SeqBAIJ" 1744dd6ea824SBarry Smith PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is) 174592c4ed94SBarry Smith { 174692c4ed94SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 1747e2ee6c50SBarry Smith PetscInt *rp,k,low,high,t,ii,jj,row,nrow,i,col,l,rmax,N,lastcol = -1; 1748c1ac3661SBarry Smith PetscInt *imax=a->imax,*ai=a->i,*ailen=a->ilen; 17496849ba73SBarry Smith PetscErrorCode ierr; 1750899cda47SBarry Smith PetscInt *aj=a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap.bs,stepval; 1751273d9f13SBarry Smith PetscTruth roworiented=a->roworiented; 1752dd6ea824SBarry Smith const PetscScalar *value = v; 1753f15d580aSBarry Smith MatScalar *ap,*aa = a->a,*bap; 175492c4ed94SBarry Smith 17553a40ed3dSBarry Smith PetscFunctionBegin; 17560e324ae4SSatish Balay if (roworiented) { 17570e324ae4SSatish Balay stepval = (n-1)*bs; 17580e324ae4SSatish Balay } else { 17590e324ae4SSatish Balay stepval = (m-1)*bs; 17600e324ae4SSatish Balay } 176192c4ed94SBarry Smith for (k=0; k<m; k++) { /* loop over added rows */ 176292c4ed94SBarry Smith row = im[k]; 17635ef9f2a5SBarry Smith if (row < 0) continue; 17642515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 176577431f27SBarry Smith if (row >= a->mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,a->mbs-1); 176692c4ed94SBarry Smith #endif 176792c4ed94SBarry Smith rp = aj + ai[row]; 176892c4ed94SBarry Smith ap = aa + bs2*ai[row]; 176992c4ed94SBarry Smith rmax = imax[row]; 177092c4ed94SBarry Smith nrow = ailen[row]; 177192c4ed94SBarry Smith low = 0; 1772c71e6ed7SBarry Smith high = nrow; 177392c4ed94SBarry Smith for (l=0; l<n; l++) { /* loop over added columns */ 17745ef9f2a5SBarry Smith if (in[l] < 0) continue; 17752515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 177677431f27SBarry Smith if (in[l] >= a->nbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[l],a->nbs-1); 177792c4ed94SBarry Smith #endif 177892c4ed94SBarry Smith col = in[l]; 177992c4ed94SBarry Smith if (roworiented) { 17800e324ae4SSatish Balay value = v + k*(stepval+bs)*bs + l*bs; 17810e324ae4SSatish Balay } else { 17820e324ae4SSatish Balay value = v + l*(stepval+bs)*bs + k*bs; 178392c4ed94SBarry Smith } 17847cd84e04SBarry Smith if (col <= lastcol) low = 0; else high = nrow; 1785e2ee6c50SBarry Smith lastcol = col; 178692c4ed94SBarry Smith while (high-low > 7) { 178792c4ed94SBarry Smith t = (low+high)/2; 178892c4ed94SBarry Smith if (rp[t] > col) high = t; 178992c4ed94SBarry Smith else low = t; 179092c4ed94SBarry Smith } 179192c4ed94SBarry Smith for (i=low; i<high; i++) { 179292c4ed94SBarry Smith if (rp[i] > col) break; 179392c4ed94SBarry Smith if (rp[i] == col) { 17948a84c255SSatish Balay bap = ap + bs2*i; 17950e324ae4SSatish Balay if (roworiented) { 17968a84c255SSatish Balay if (is == ADD_VALUES) { 1797dd9472c6SBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 1798dd9472c6SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 17998a84c255SSatish Balay bap[jj] += *value++; 1800dd9472c6SBarry Smith } 1801dd9472c6SBarry Smith } 18020e324ae4SSatish Balay } else { 1803dd9472c6SBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 1804dd9472c6SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 18050e324ae4SSatish Balay bap[jj] = *value++; 18068a84c255SSatish Balay } 1807dd9472c6SBarry Smith } 1808dd9472c6SBarry Smith } 18090e324ae4SSatish Balay } else { 18100e324ae4SSatish Balay if (is == ADD_VALUES) { 1811dd9472c6SBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 1812dd9472c6SBarry Smith for (jj=0; jj<bs; jj++) { 18130e324ae4SSatish Balay *bap++ += *value++; 1814dd9472c6SBarry Smith } 1815dd9472c6SBarry Smith } 18160e324ae4SSatish Balay } else { 1817dd9472c6SBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 1818dd9472c6SBarry Smith for (jj=0; jj<bs; jj++) { 18190e324ae4SSatish Balay *bap++ = *value++; 18200e324ae4SSatish Balay } 18218a84c255SSatish Balay } 1822dd9472c6SBarry Smith } 1823dd9472c6SBarry Smith } 1824f1241b54SBarry Smith goto noinsert2; 182592c4ed94SBarry Smith } 182692c4ed94SBarry Smith } 182789280ab3SLois Curfman McInnes if (nonew == 1) goto noinsert2; 1828085a36d4SBarry Smith if (nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col); 1829421e10b8SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 1830c03d1d03SSatish Balay N = nrow++ - 1; high++; 183192c4ed94SBarry Smith /* shift up all the later entries in this row */ 183292c4ed94SBarry Smith for (ii=N; ii>=i; ii--) { 183392c4ed94SBarry Smith rp[ii+1] = rp[ii]; 1834549d3d68SSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); 183592c4ed94SBarry Smith } 1836549d3d68SSatish Balay if (N >= i) { 1837549d3d68SSatish Balay ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr); 1838549d3d68SSatish Balay } 183992c4ed94SBarry Smith rp[i] = col; 18408a84c255SSatish Balay bap = ap + bs2*i; 18410e324ae4SSatish Balay if (roworiented) { 1842dd9472c6SBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 1843dd9472c6SBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 18440e324ae4SSatish Balay bap[jj] = *value++; 1845dd9472c6SBarry Smith } 1846dd9472c6SBarry Smith } 18470e324ae4SSatish Balay } else { 1848dd9472c6SBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 1849dd9472c6SBarry Smith for (jj=0; jj<bs; jj++) { 18500e324ae4SSatish Balay *bap++ = *value++; 18510e324ae4SSatish Balay } 1852dd9472c6SBarry Smith } 1853dd9472c6SBarry Smith } 1854f1241b54SBarry Smith noinsert2:; 185592c4ed94SBarry Smith low = i; 185692c4ed94SBarry Smith } 185792c4ed94SBarry Smith ailen[row] = nrow; 185892c4ed94SBarry Smith } 18593a40ed3dSBarry Smith PetscFunctionReturn(0); 186092c4ed94SBarry Smith } 186126e093fcSHong Zhang 18624a2ae208SSatish Balay #undef __FUNCT__ 18634a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_SeqBAIJ" 1864dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_SeqBAIJ(Mat A,MatAssemblyType mode) 1865584200bdSSatish Balay { 1866584200bdSSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 1867c1ac3661SBarry Smith PetscInt fshift = 0,i,j,*ai = a->i,*aj = a->j,*imax = a->imax; 1868899cda47SBarry Smith PetscInt m = A->rmap.N,*ip,N,*ailen = a->ilen; 18696849ba73SBarry Smith PetscErrorCode ierr; 1870c1ac3661SBarry Smith PetscInt mbs = a->mbs,bs2 = a->bs2,rmax = 0; 18713f1db9ecSBarry Smith MatScalar *aa = a->a,*ap; 18723447b6efSHong Zhang PetscReal ratio=0.6; 1873584200bdSSatish Balay 18743a40ed3dSBarry Smith PetscFunctionBegin; 18753a40ed3dSBarry Smith if (mode == MAT_FLUSH_ASSEMBLY) PetscFunctionReturn(0); 1876584200bdSSatish Balay 187743ee02c3SBarry Smith if (m) rmax = ailen[0]; 1878584200bdSSatish Balay for (i=1; i<mbs; i++) { 1879584200bdSSatish Balay /* move each row back by the amount of empty slots (fshift) before it*/ 1880584200bdSSatish Balay fshift += imax[i-1] - ailen[i-1]; 1881d402145bSBarry Smith rmax = PetscMax(rmax,ailen[i]); 1882584200bdSSatish Balay if (fshift) { 1883a7c10996SSatish Balay ip = aj + ai[i]; ap = aa + bs2*ai[i]; 1884584200bdSSatish Balay N = ailen[i]; 1885584200bdSSatish Balay for (j=0; j<N; j++) { 1886584200bdSSatish Balay ip[j-fshift] = ip[j]; 1887549d3d68SSatish Balay ierr = PetscMemcpy(ap+(j-fshift)*bs2,ap+j*bs2,bs2*sizeof(MatScalar));CHKERRQ(ierr); 1888584200bdSSatish Balay } 1889584200bdSSatish Balay } 1890584200bdSSatish Balay ai[i] = ai[i-1] + ailen[i-1]; 1891584200bdSSatish Balay } 1892584200bdSSatish Balay if (mbs) { 1893584200bdSSatish Balay fshift += imax[mbs-1] - ailen[mbs-1]; 1894584200bdSSatish Balay ai[mbs] = ai[mbs-1] + ailen[mbs-1]; 1895584200bdSSatish Balay } 1896584200bdSSatish Balay /* reset ilen and imax for each row */ 1897584200bdSSatish Balay for (i=0; i<mbs; i++) { 1898584200bdSSatish Balay ailen[i] = imax[i] = ai[i+1] - ai[i]; 1899584200bdSSatish Balay } 1900a7c10996SSatish Balay a->nz = ai[mbs]; 1901584200bdSSatish Balay 1902584200bdSSatish Balay /* diagonals may have moved, so kill the diagonal pointers */ 1903b01c7715SBarry Smith a->idiagvalid = PETSC_FALSE; 1904584200bdSSatish Balay if (fshift && a->diag) { 1905606d414cSSatish Balay ierr = PetscFree(a->diag);CHKERRQ(ierr); 190652e6d16bSBarry Smith ierr = PetscLogObjectMemory(A,-(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr); 1907584200bdSSatish Balay a->diag = 0; 1908584200bdSSatish Balay } 1909899cda47SBarry Smith ierr = PetscInfo5(A,"Matrix size: %D X %D, block size %D; storage space: %D unneeded, %D used\n",m,A->cmap.n,A->rmap.bs,fshift*bs2,a->nz*bs2);CHKERRQ(ierr); 1910ae15b995SBarry Smith ierr = PetscInfo1(A,"Number of mallocs during MatSetValues is %D\n",a->reallocs);CHKERRQ(ierr); 1911ae15b995SBarry Smith ierr = PetscInfo1(A,"Most nonzeros blocks in any row is %D\n",rmax);CHKERRQ(ierr); 1912e2f3b5e9SSatish Balay a->reallocs = 0; 19130e6d2581SBarry Smith A->info.nz_unneeded = (PetscReal)fshift*bs2; 1914cf4441caSHong Zhang 1915cb5d8e9eSHong Zhang /* check for zero rows. If found a large number of zero rows, use CompressedRow functions */ 19162f53aa61SHong Zhang if (a->compressedrow.use){ 1917317fbc4cSHong Zhang ierr = Mat_CheckCompressedRow(A,&a->compressedrow,a->i,mbs,ratio);CHKERRQ(ierr); 191873e7a558SHong Zhang } 191988e51ccdSHong Zhang 192088e51ccdSHong Zhang A->same_nonzero = PETSC_TRUE; 19213a40ed3dSBarry Smith PetscFunctionReturn(0); 1922584200bdSSatish Balay } 1923584200bdSSatish Balay 1924bea157c4SSatish Balay /* 1925bea157c4SSatish Balay This function returns an array of flags which indicate the locations of contiguous 1926bea157c4SSatish Balay blocks that should be zeroed. for eg: if bs = 3 and is = [0,1,2,3,5,6,7,8,9] 1927bea157c4SSatish Balay then the resulting sizes = [3,1,1,3,1] correspondig to sets [(0,1,2),(3),(5),(6,7,8),(9)] 1928bea157c4SSatish Balay Assume: sizes should be long enough to hold all the values. 1929bea157c4SSatish Balay */ 19304a2ae208SSatish Balay #undef __FUNCT__ 19314a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_SeqBAIJ_Check_Blocks" 1932c1ac3661SBarry Smith static PetscErrorCode MatZeroRows_SeqBAIJ_Check_Blocks(PetscInt idx[],PetscInt n,PetscInt bs,PetscInt sizes[], PetscInt *bs_max) 1933d9b7c43dSSatish Balay { 1934c1ac3661SBarry Smith PetscInt i,j,k,row; 1935bea157c4SSatish Balay PetscTruth flg; 19363a40ed3dSBarry Smith 1937433994e6SBarry Smith PetscFunctionBegin; 1938bea157c4SSatish Balay for (i=0,j=0; i<n; j++) { 1939bea157c4SSatish Balay row = idx[i]; 1940bea157c4SSatish Balay if (row%bs!=0) { /* Not the begining of a block */ 1941bea157c4SSatish Balay sizes[j] = 1; 1942bea157c4SSatish Balay i++; 1943e4fda26cSSatish Balay } else if (i+bs > n) { /* complete block doesn't exist (at idx end) */ 1944bea157c4SSatish Balay sizes[j] = 1; /* Also makes sure atleast 'bs' values exist for next else */ 1945bea157c4SSatish Balay i++; 1946bea157c4SSatish Balay } else { /* Begining of the block, so check if the complete block exists */ 1947bea157c4SSatish Balay flg = PETSC_TRUE; 1948bea157c4SSatish Balay for (k=1; k<bs; k++) { 1949bea157c4SSatish Balay if (row+k != idx[i+k]) { /* break in the block */ 1950bea157c4SSatish Balay flg = PETSC_FALSE; 1951bea157c4SSatish Balay break; 1952d9b7c43dSSatish Balay } 1953bea157c4SSatish Balay } 1954abc0a331SBarry Smith if (flg) { /* No break in the bs */ 1955bea157c4SSatish Balay sizes[j] = bs; 1956bea157c4SSatish Balay i+= bs; 1957bea157c4SSatish Balay } else { 1958bea157c4SSatish Balay sizes[j] = 1; 1959bea157c4SSatish Balay i++; 1960bea157c4SSatish Balay } 1961bea157c4SSatish Balay } 1962bea157c4SSatish Balay } 1963bea157c4SSatish Balay *bs_max = j; 19643a40ed3dSBarry Smith PetscFunctionReturn(0); 1965d9b7c43dSSatish Balay } 1966d9b7c43dSSatish Balay 19674a2ae208SSatish Balay #undef __FUNCT__ 19684a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_SeqBAIJ" 1969f4df32b1SMatthew Knepley PetscErrorCode MatZeroRows_SeqBAIJ(Mat A,PetscInt is_n,const PetscInt is_idx[],PetscScalar diag) 1970d9b7c43dSSatish Balay { 1971d9b7c43dSSatish Balay Mat_SeqBAIJ *baij=(Mat_SeqBAIJ*)A->data; 1972dfbe8321SBarry Smith PetscErrorCode ierr; 1973f4df32b1SMatthew Knepley PetscInt i,j,k,count,*rows; 1974899cda47SBarry Smith PetscInt bs=A->rmap.bs,bs2=baij->bs2,*sizes,row,bs_max; 197587828ca2SBarry Smith PetscScalar zero = 0.0; 19763f1db9ecSBarry Smith MatScalar *aa; 1977d9b7c43dSSatish Balay 19783a40ed3dSBarry Smith PetscFunctionBegin; 1979d9b7c43dSSatish Balay /* Make a copy of the IS and sort it */ 1980bea157c4SSatish Balay /* allocate memory for rows,sizes */ 1981c1ac3661SBarry Smith ierr = PetscMalloc((3*is_n+1)*sizeof(PetscInt),&rows);CHKERRQ(ierr); 1982bea157c4SSatish Balay sizes = rows + is_n; 1983bea157c4SSatish Balay 1984563b5814SBarry Smith /* copy IS values to rows, and sort them */ 1985bea157c4SSatish Balay for (i=0; i<is_n; i++) { rows[i] = is_idx[i]; } 1986bea157c4SSatish Balay ierr = PetscSortInt(is_n,rows);CHKERRQ(ierr); 1987dffd3267SBarry Smith if (baij->keepzeroedrows) { 1988dffd3267SBarry Smith for (i=0; i<is_n; i++) { sizes[i] = 1; } 1989dffd3267SBarry Smith bs_max = is_n; 199088e51ccdSHong Zhang A->same_nonzero = PETSC_TRUE; 1991dffd3267SBarry Smith } else { 1992bea157c4SSatish Balay ierr = MatZeroRows_SeqBAIJ_Check_Blocks(rows,is_n,bs,sizes,&bs_max);CHKERRQ(ierr); 199388e51ccdSHong Zhang A->same_nonzero = PETSC_FALSE; 1994dffd3267SBarry Smith } 1995bea157c4SSatish Balay 1996bea157c4SSatish Balay for (i=0,j=0; i<bs_max; j+=sizes[i],i++) { 1997bea157c4SSatish Balay row = rows[j]; 1998899cda47SBarry Smith if (row < 0 || row > A->rmap.N) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"row %D out of range",row); 1999bea157c4SSatish Balay count = (baij->i[row/bs +1] - baij->i[row/bs])*bs; 2000b31fbe3bSSatish Balay aa = ((MatScalar*)(baij->a)) + baij->i[row/bs]*bs2 + (row%bs); 2001dffd3267SBarry Smith if (sizes[i] == bs && !baij->keepzeroedrows) { 2002f4df32b1SMatthew Knepley if (diag != 0.0) { 2003bea157c4SSatish Balay if (baij->ilen[row/bs] > 0) { 2004bea157c4SSatish Balay baij->ilen[row/bs] = 1; 2005bea157c4SSatish Balay baij->j[baij->i[row/bs]] = row/bs; 2006bea157c4SSatish Balay ierr = PetscMemzero(aa,count*bs*sizeof(MatScalar));CHKERRQ(ierr); 2007a07cd24cSSatish Balay } 2008563b5814SBarry Smith /* Now insert all the diagonal values for this bs */ 2009bea157c4SSatish Balay for (k=0; k<bs; k++) { 2010f4df32b1SMatthew Knepley ierr = (*A->ops->setvalues)(A,1,rows+j+k,1,rows+j+k,&diag,INSERT_VALUES);CHKERRQ(ierr); 2011bea157c4SSatish Balay } 2012f4df32b1SMatthew Knepley } else { /* (diag == 0.0) */ 2013bea157c4SSatish Balay baij->ilen[row/bs] = 0; 2014f4df32b1SMatthew Knepley } /* end (diag == 0.0) */ 2015bea157c4SSatish Balay } else { /* (sizes[i] != bs) */ 2016aa482453SBarry Smith #if defined (PETSC_USE_DEBUG) 2017634064b4SBarry Smith if (sizes[i] != 1) SETERRQ(PETSC_ERR_PLIB,"Internal Error. Value should be 1"); 2018bea157c4SSatish Balay #endif 2019bea157c4SSatish Balay for (k=0; k<count; k++) { 2020d9b7c43dSSatish Balay aa[0] = zero; 2021d9b7c43dSSatish Balay aa += bs; 2022d9b7c43dSSatish Balay } 2023f4df32b1SMatthew Knepley if (diag != 0.0) { 2024f4df32b1SMatthew Knepley ierr = (*A->ops->setvalues)(A,1,rows+j,1,rows+j,&diag,INSERT_VALUES);CHKERRQ(ierr); 2025d9b7c43dSSatish Balay } 2026d9b7c43dSSatish Balay } 2027bea157c4SSatish Balay } 2028bea157c4SSatish Balay 2029606d414cSSatish Balay ierr = PetscFree(rows);CHKERRQ(ierr); 20309a8dea36SBarry Smith ierr = MatAssemblyEnd_SeqBAIJ(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 20313a40ed3dSBarry Smith PetscFunctionReturn(0); 2032d9b7c43dSSatish Balay } 20331c351548SSatish Balay 20344a2ae208SSatish Balay #undef __FUNCT__ 20354a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_SeqBAIJ" 2036c1ac3661SBarry Smith PetscErrorCode MatSetValues_SeqBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is) 20372d61bbb3SSatish Balay { 20382d61bbb3SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 2039e2ee6c50SBarry Smith PetscInt *rp,k,low,high,t,ii,row,nrow,i,col,l,rmax,N,lastcol = -1; 2040c1ac3661SBarry Smith PetscInt *imax=a->imax,*ai=a->i,*ailen=a->ilen; 2041899cda47SBarry Smith PetscInt *aj=a->j,nonew=a->nonew,bs=A->rmap.bs,brow,bcol; 20426849ba73SBarry Smith PetscErrorCode ierr; 2043c1ac3661SBarry Smith PetscInt ridx,cidx,bs2=a->bs2; 2044273d9f13SBarry Smith PetscTruth roworiented=a->roworiented; 20453f1db9ecSBarry Smith MatScalar *ap,value,*aa=a->a,*bap; 20462d61bbb3SSatish Balay 20472d61bbb3SSatish Balay PetscFunctionBegin; 20482d61bbb3SSatish Balay for (k=0; k<m; k++) { /* loop over added rows */ 2049085a36d4SBarry Smith row = im[k]; 2050085a36d4SBarry Smith brow = row/bs; 20515ef9f2a5SBarry Smith if (row < 0) continue; 20522515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 2053899cda47SBarry Smith if (row >= A->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,A->rmap.N-1); 20542d61bbb3SSatish Balay #endif 20552d61bbb3SSatish Balay rp = aj + ai[brow]; 20562d61bbb3SSatish Balay ap = aa + bs2*ai[brow]; 20572d61bbb3SSatish Balay rmax = imax[brow]; 20582d61bbb3SSatish Balay nrow = ailen[brow]; 20592d61bbb3SSatish Balay low = 0; 2060c71e6ed7SBarry Smith high = nrow; 20612d61bbb3SSatish Balay for (l=0; l<n; l++) { /* loop over added columns */ 20625ef9f2a5SBarry Smith if (in[l] < 0) continue; 20632515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 2064899cda47SBarry Smith if (in[l] >= A->cmap.n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[l],A->cmap.n-1); 20652d61bbb3SSatish Balay #endif 20662d61bbb3SSatish Balay col = in[l]; bcol = col/bs; 20672d61bbb3SSatish Balay ridx = row % bs; cidx = col % bs; 20682d61bbb3SSatish Balay if (roworiented) { 20695ef9f2a5SBarry Smith value = v[l + k*n]; 20702d61bbb3SSatish Balay } else { 20712d61bbb3SSatish Balay value = v[k + l*m]; 20722d61bbb3SSatish Balay } 20737cd84e04SBarry Smith if (col <= lastcol) low = 0; else high = nrow; 2074e2ee6c50SBarry Smith lastcol = col; 20752d61bbb3SSatish Balay while (high-low > 7) { 20762d61bbb3SSatish Balay t = (low+high)/2; 20772d61bbb3SSatish Balay if (rp[t] > bcol) high = t; 20782d61bbb3SSatish Balay else low = t; 20792d61bbb3SSatish Balay } 20802d61bbb3SSatish Balay for (i=low; i<high; i++) { 20812d61bbb3SSatish Balay if (rp[i] > bcol) break; 20822d61bbb3SSatish Balay if (rp[i] == bcol) { 20832d61bbb3SSatish Balay bap = ap + bs2*i + bs*cidx + ridx; 20842d61bbb3SSatish Balay if (is == ADD_VALUES) *bap += value; 20852d61bbb3SSatish Balay else *bap = value; 20862d61bbb3SSatish Balay goto noinsert1; 20872d61bbb3SSatish Balay } 20882d61bbb3SSatish Balay } 20892d61bbb3SSatish Balay if (nonew == 1) goto noinsert1; 2090085a36d4SBarry Smith if (nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col); 2091421e10b8SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 2092c03d1d03SSatish Balay N = nrow++ - 1; high++; 20932d61bbb3SSatish Balay /* shift up all the later entries in this row */ 20942d61bbb3SSatish Balay for (ii=N; ii>=i; ii--) { 20952d61bbb3SSatish Balay rp[ii+1] = rp[ii]; 2096549d3d68SSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); 20972d61bbb3SSatish Balay } 2098549d3d68SSatish Balay if (N>=i) { 2099549d3d68SSatish Balay ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr); 2100549d3d68SSatish Balay } 21012d61bbb3SSatish Balay rp[i] = bcol; 21022d61bbb3SSatish Balay ap[bs2*i + bs*cidx + ridx] = value; 2103085a36d4SBarry Smith a->nz++; 21042d61bbb3SSatish Balay noinsert1:; 21052d61bbb3SSatish Balay low = i; 21062d61bbb3SSatish Balay } 21072d61bbb3SSatish Balay ailen[brow] = nrow; 21082d61bbb3SSatish Balay } 210988e51ccdSHong Zhang A->same_nonzero = PETSC_FALSE; 21102d61bbb3SSatish Balay PetscFunctionReturn(0); 21112d61bbb3SSatish Balay } 21122d61bbb3SSatish Balay 21132d61bbb3SSatish Balay 21144a2ae208SSatish Balay #undef __FUNCT__ 21154a2ae208SSatish Balay #define __FUNCT__ "MatILUFactor_SeqBAIJ" 2116dfbe8321SBarry Smith PetscErrorCode MatILUFactor_SeqBAIJ(Mat inA,IS row,IS col,MatFactorInfo *info) 21172d61bbb3SSatish Balay { 21182d61bbb3SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)inA->data; 21192d61bbb3SSatish Balay Mat outA; 2120dfbe8321SBarry Smith PetscErrorCode ierr; 2121667159a5SBarry Smith PetscTruth row_identity,col_identity; 21222d61bbb3SSatish Balay 21232d61bbb3SSatish Balay PetscFunctionBegin; 2124d3d32019SBarry Smith if (info->levels != 0) SETERRQ(PETSC_ERR_SUP,"Only levels = 0 supported for in-place ILU"); 2125667159a5SBarry Smith ierr = ISIdentity(row,&row_identity);CHKERRQ(ierr); 2126667159a5SBarry Smith ierr = ISIdentity(col,&col_identity);CHKERRQ(ierr); 2127667159a5SBarry Smith if (!row_identity || !col_identity) { 2128634064b4SBarry Smith SETERRQ(PETSC_ERR_ARG_WRONG,"Row and column permutations must be identity for in-place ILU"); 2129667159a5SBarry Smith } 21302d61bbb3SSatish Balay 21312d61bbb3SSatish Balay outA = inA; 21322d61bbb3SSatish Balay inA->factor = FACTOR_LU; 21332d61bbb3SSatish Balay 2134c4992f7dSBarry Smith ierr = MatMarkDiagonal_SeqBAIJ(inA);CHKERRQ(ierr); 2135cf242676SKris Buschelman 2136c38d4ed2SBarry Smith ierr = PetscObjectReference((PetscObject)row);CHKERRQ(ierr); 2137c3122656SLisandro Dalcin if (a->row) { ierr = ISDestroy(a->row);CHKERRQ(ierr); } 2138c3122656SLisandro Dalcin a->row = row; 2139c38d4ed2SBarry Smith ierr = PetscObjectReference((PetscObject)col);CHKERRQ(ierr); 2140c3122656SLisandro Dalcin if (a->col) { ierr = ISDestroy(a->col);CHKERRQ(ierr); } 2141c3122656SLisandro Dalcin a->col = col; 2142c38d4ed2SBarry Smith 2143c38d4ed2SBarry Smith /* Create the invert permutation so that it can be used in MatLUFactorNumeric() */ 21444c49b128SBarry Smith ierr = ISInvertPermutation(col,PETSC_DECIDE,&a->icol);CHKERRQ(ierr); 214552e6d16bSBarry Smith ierr = PetscLogObjectParent(inA,a->icol);CHKERRQ(ierr); 2146c38d4ed2SBarry Smith 2147cf242676SKris Buschelman /* 2148cf242676SKris Buschelman Blocksize 2, 3, 4, 5, 6 and 7 have a special faster factorization/solver 2149cf242676SKris Buschelman for ILU(0) factorization with natural ordering 2150cf242676SKris Buschelman */ 2151899cda47SBarry Smith if (inA->rmap.bs < 8) { 2152cf242676SKris Buschelman ierr = MatSeqBAIJ_UpdateFactorNumeric_NaturalOrdering(inA);CHKERRQ(ierr); 2153cf242676SKris Buschelman } else { 2154c38d4ed2SBarry Smith if (!a->solve_work) { 2155899cda47SBarry Smith ierr = PetscMalloc((inA->rmap.N+inA->rmap.bs)*sizeof(PetscScalar),&a->solve_work);CHKERRQ(ierr); 2156899cda47SBarry Smith ierr = PetscLogObjectMemory(inA,(inA->rmap.N+inA->rmap.bs)*sizeof(PetscScalar));CHKERRQ(ierr); 2157c38d4ed2SBarry Smith } 21582d61bbb3SSatish Balay } 21592d61bbb3SSatish Balay 2160af281ebdSHong Zhang ierr = MatLUFactorNumeric(inA,info,&outA);CHKERRQ(ierr); 2161667159a5SBarry Smith 21622d61bbb3SSatish Balay PetscFunctionReturn(0); 21632d61bbb3SSatish Balay } 2164d9b7c43dSSatish Balay 2165fb2e594dSBarry Smith EXTERN_C_BEGIN 21664a2ae208SSatish Balay #undef __FUNCT__ 21674a2ae208SSatish Balay #define __FUNCT__ "MatSeqBAIJSetColumnIndices_SeqBAIJ" 2168be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJSetColumnIndices_SeqBAIJ(Mat mat,PetscInt *indices) 216927a8da17SBarry Smith { 217027a8da17SBarry Smith Mat_SeqBAIJ *baij = (Mat_SeqBAIJ *)mat->data; 2171c1ac3661SBarry Smith PetscInt i,nz,nbs; 217227a8da17SBarry Smith 217327a8da17SBarry Smith PetscFunctionBegin; 217414db4f74SSatish Balay nz = baij->maxnz/baij->bs2; 217514db4f74SSatish Balay nbs = baij->nbs; 217627a8da17SBarry Smith for (i=0; i<nz; i++) { 217727a8da17SBarry Smith baij->j[i] = indices[i]; 217827a8da17SBarry Smith } 217927a8da17SBarry Smith baij->nz = nz; 218014db4f74SSatish Balay for (i=0; i<nbs; i++) { 218127a8da17SBarry Smith baij->ilen[i] = baij->imax[i]; 218227a8da17SBarry Smith } 218327a8da17SBarry Smith 218427a8da17SBarry Smith PetscFunctionReturn(0); 218527a8da17SBarry Smith } 2186fb2e594dSBarry Smith EXTERN_C_END 218727a8da17SBarry Smith 21884a2ae208SSatish Balay #undef __FUNCT__ 21894a2ae208SSatish Balay #define __FUNCT__ "MatSeqBAIJSetColumnIndices" 219027a8da17SBarry Smith /*@ 219127a8da17SBarry Smith MatSeqBAIJSetColumnIndices - Set the column indices for all the rows 219227a8da17SBarry Smith in the matrix. 219327a8da17SBarry Smith 219427a8da17SBarry Smith Input Parameters: 219527a8da17SBarry Smith + mat - the SeqBAIJ matrix 219627a8da17SBarry Smith - indices - the column indices 219727a8da17SBarry Smith 219815091d37SBarry Smith Level: advanced 219915091d37SBarry Smith 220027a8da17SBarry Smith Notes: 220127a8da17SBarry Smith This can be called if you have precomputed the nonzero structure of the 220227a8da17SBarry Smith matrix and want to provide it to the matrix object to improve the performance 220327a8da17SBarry Smith of the MatSetValues() operation. 220427a8da17SBarry Smith 220527a8da17SBarry Smith You MUST have set the correct numbers of nonzeros per row in the call to 2206d1be2dadSMatthew Knepley MatCreateSeqBAIJ(), and the columns indices MUST be sorted. 220727a8da17SBarry Smith 220827a8da17SBarry Smith MUST be called before any calls to MatSetValues(); 220927a8da17SBarry Smith 221027a8da17SBarry Smith @*/ 2211be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJSetColumnIndices(Mat mat,PetscInt *indices) 221227a8da17SBarry Smith { 2213c1ac3661SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt *); 221427a8da17SBarry Smith 221527a8da17SBarry Smith PetscFunctionBegin; 22164482741eSBarry Smith PetscValidHeaderSpecific(mat,MAT_COOKIE,1); 22174482741eSBarry Smith PetscValidPointer(indices,2); 2218c134de8dSSatish Balay ierr = PetscObjectQueryFunction((PetscObject)mat,"MatSeqBAIJSetColumnIndices_C",(void (**)(void))&f);CHKERRQ(ierr); 221927a8da17SBarry Smith if (f) { 222027a8da17SBarry Smith ierr = (*f)(mat,indices);CHKERRQ(ierr); 222127a8da17SBarry Smith } else { 2222634064b4SBarry Smith SETERRQ(PETSC_ERR_ARG_WRONG,"Wrong type of matrix to set column indices"); 222327a8da17SBarry Smith } 222427a8da17SBarry Smith PetscFunctionReturn(0); 222527a8da17SBarry Smith } 222627a8da17SBarry Smith 22274a2ae208SSatish Balay #undef __FUNCT__ 2228985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_SeqBAIJ" 2229985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_SeqBAIJ(Mat A,Vec v,PetscInt idx[]) 2230273d9f13SBarry Smith { 2231273d9f13SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 2232dfbe8321SBarry Smith PetscErrorCode ierr; 2233c1ac3661SBarry Smith PetscInt i,j,n,row,bs,*ai,*aj,mbs; 2234273d9f13SBarry Smith PetscReal atmp; 223587828ca2SBarry Smith PetscScalar *x,zero = 0.0; 2236273d9f13SBarry Smith MatScalar *aa; 2237c1ac3661SBarry Smith PetscInt ncols,brow,krow,kcol; 2238273d9f13SBarry Smith 2239273d9f13SBarry Smith PetscFunctionBegin; 2240273d9f13SBarry Smith if (A->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 2241899cda47SBarry Smith bs = A->rmap.bs; 2242273d9f13SBarry Smith aa = a->a; 2243273d9f13SBarry Smith ai = a->i; 2244273d9f13SBarry Smith aj = a->j; 2245273d9f13SBarry Smith mbs = a->mbs; 2246273d9f13SBarry Smith 22472dcb1b2aSMatthew Knepley ierr = VecSet(v,zero);CHKERRQ(ierr); 2248985db425SBarry Smith if (idx) { 2249985db425SBarry Smith for (i=0; i<A->rmap.n;i++) idx[i] = 0; 2250985db425SBarry Smith } 22511ebc52fbSHong Zhang ierr = VecGetArray(v,&x);CHKERRQ(ierr); 2252273d9f13SBarry Smith ierr = VecGetLocalSize(v,&n);CHKERRQ(ierr); 2253899cda47SBarry Smith if (n != A->rmap.N) SETERRQ(PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector"); 2254273d9f13SBarry Smith for (i=0; i<mbs; i++) { 2255273d9f13SBarry Smith ncols = ai[1] - ai[0]; ai++; 2256273d9f13SBarry Smith brow = bs*i; 2257273d9f13SBarry Smith for (j=0; j<ncols; j++){ 2258273d9f13SBarry Smith for (kcol=0; kcol<bs; kcol++){ 2259273d9f13SBarry Smith for (krow=0; krow<bs; krow++){ 2260273d9f13SBarry Smith atmp = PetscAbsScalar(*aa);aa++; 2261273d9f13SBarry Smith row = brow + krow; /* row index */ 2262a83599f4SBarry Smith /* printf("val[%d,%d]: %G\n",row,bcol+kcol,atmp); */ 2263985db425SBarry Smith if (PetscAbsScalar(x[row]) < atmp) {x[row] = atmp; if (idx) idx[row] = bs*(*aj) + kcol;} 2264273d9f13SBarry Smith } 2265273d9f13SBarry Smith } 2266273d9f13SBarry Smith aj++; 2267273d9f13SBarry Smith } 2268273d9f13SBarry Smith } 22691ebc52fbSHong Zhang ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 2270273d9f13SBarry Smith PetscFunctionReturn(0); 2271273d9f13SBarry Smith } 2272273d9f13SBarry Smith 22734a2ae208SSatish Balay #undef __FUNCT__ 22743c896bc6SHong Zhang #define __FUNCT__ "MatCopy_SeqBAIJ" 22753c896bc6SHong Zhang PetscErrorCode MatCopy_SeqBAIJ(Mat A,Mat B,MatStructure str) 22763c896bc6SHong Zhang { 22773c896bc6SHong Zhang PetscErrorCode ierr; 22783c896bc6SHong Zhang 22793c896bc6SHong Zhang PetscFunctionBegin; 22803c896bc6SHong Zhang /* If the two matrices have the same copy implementation, use fast copy. */ 22813c896bc6SHong Zhang if (str == SAME_NONZERO_PATTERN && (A->ops->copy == B->ops->copy)) { 22823c896bc6SHong Zhang Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 22833c896bc6SHong Zhang Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)B->data; 22843c896bc6SHong Zhang 2285899cda47SBarry Smith if (a->i[A->rmap.N] != b->i[B->rmap.N]) { 22863c896bc6SHong Zhang SETERRQ(PETSC_ERR_ARG_INCOMP,"Number of nonzeros in two matrices are different"); 22873c896bc6SHong Zhang } 2288899cda47SBarry Smith ierr = PetscMemcpy(b->a,a->a,(a->i[A->rmap.N])*sizeof(PetscScalar));CHKERRQ(ierr); 22893c896bc6SHong Zhang } else { 22903c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 22913c896bc6SHong Zhang } 22923c896bc6SHong Zhang PetscFunctionReturn(0); 22933c896bc6SHong Zhang } 22943c896bc6SHong Zhang 22953c896bc6SHong Zhang #undef __FUNCT__ 22964a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_SeqBAIJ" 2297dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_SeqBAIJ(Mat A) 2298273d9f13SBarry Smith { 2299dfbe8321SBarry Smith PetscErrorCode ierr; 2300273d9f13SBarry Smith 2301273d9f13SBarry Smith PetscFunctionBegin; 23027edd0491SSatish Balay ierr = MatSeqBAIJSetPreallocation_SeqBAIJ(A,PetscMax(A->rmap.bs,1),PETSC_DEFAULT,0);CHKERRQ(ierr); 2303273d9f13SBarry Smith PetscFunctionReturn(0); 2304273d9f13SBarry Smith } 2305273d9f13SBarry Smith 23064a2ae208SSatish Balay #undef __FUNCT__ 23074a2ae208SSatish Balay #define __FUNCT__ "MatGetArray_SeqBAIJ" 2308dfbe8321SBarry Smith PetscErrorCode MatGetArray_SeqBAIJ(Mat A,PetscScalar *array[]) 2309f2a5309cSSatish Balay { 2310f2a5309cSSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 2311f2a5309cSSatish Balay PetscFunctionBegin; 2312f2a5309cSSatish Balay *array = a->a; 2313f2a5309cSSatish Balay PetscFunctionReturn(0); 2314f2a5309cSSatish Balay } 2315f2a5309cSSatish Balay 23164a2ae208SSatish Balay #undef __FUNCT__ 23174a2ae208SSatish Balay #define __FUNCT__ "MatRestoreArray_SeqBAIJ" 2318dfbe8321SBarry Smith PetscErrorCode MatRestoreArray_SeqBAIJ(Mat A,PetscScalar *array[]) 2319f2a5309cSSatish Balay { 2320f2a5309cSSatish Balay PetscFunctionBegin; 2321f2a5309cSSatish Balay PetscFunctionReturn(0); 2322f2a5309cSSatish Balay } 2323f2a5309cSSatish Balay 232442ee4b1aSHong Zhang #include "petscblaslapack.h" 232542ee4b1aSHong Zhang #undef __FUNCT__ 232642ee4b1aSHong Zhang #define __FUNCT__ "MatAXPY_SeqBAIJ" 2327f4df32b1SMatthew Knepley PetscErrorCode MatAXPY_SeqBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 232842ee4b1aSHong Zhang { 232942ee4b1aSHong Zhang Mat_SeqBAIJ *x = (Mat_SeqBAIJ *)X->data,*y = (Mat_SeqBAIJ *)Y->data; 2330dfbe8321SBarry Smith PetscErrorCode ierr; 2331899cda47SBarry Smith PetscInt i,bs=Y->rmap.bs,j,bs2; 23320805154bSBarry Smith PetscBLASInt one=1,bnz = PetscBLASIntCast(x->nz); 233342ee4b1aSHong Zhang 233442ee4b1aSHong Zhang PetscFunctionBegin; 233542ee4b1aSHong Zhang if (str == SAME_NONZERO_PATTERN) { 2336f4df32b1SMatthew Knepley PetscScalar alpha = a; 2337f4df32b1SMatthew Knepley BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one); 2338c537a176SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 2339c4319e64SHong Zhang if (y->xtoy && y->XtoY != X) { 2340c4319e64SHong Zhang ierr = PetscFree(y->xtoy);CHKERRQ(ierr); 2341c4319e64SHong Zhang ierr = MatDestroy(y->XtoY);CHKERRQ(ierr); 2342c537a176SHong Zhang } 2343c4319e64SHong Zhang if (!y->xtoy) { /* get xtoy */ 2344c4319e64SHong Zhang ierr = MatAXPYGetxtoy_Private(x->mbs,x->i,x->j,PETSC_NULL, y->i,y->j,PETSC_NULL, &y->xtoy);CHKERRQ(ierr); 2345c4319e64SHong Zhang y->XtoY = X; 2346c537a176SHong Zhang } 2347c4319e64SHong Zhang bs2 = bs*bs; 2348c537a176SHong Zhang for (i=0; i<x->nz; i++) { 2349c4319e64SHong Zhang j = 0; 2350c4319e64SHong Zhang while (j < bs2){ 2351f4df32b1SMatthew Knepley y->a[bs2*y->xtoy[i]+j] += a*(x->a[bs2*i+j]); 2352c4319e64SHong Zhang j++; 2353c537a176SHong Zhang } 2354c4319e64SHong Zhang } 23551e2582c4SBarry Smith ierr = PetscInfo3(Y,"ratio of nnz(X)/nnz(Y): %D/%D = %G\n",bs2*x->nz,bs2*y->nz,(PetscReal)(bs2*x->nz)/(bs2*y->nz));CHKERRQ(ierr); 235642ee4b1aSHong Zhang } else { 2357f4df32b1SMatthew Knepley ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 235842ee4b1aSHong Zhang } 235942ee4b1aSHong Zhang PetscFunctionReturn(0); 236042ee4b1aSHong Zhang } 236142ee4b1aSHong Zhang 236299cafbc1SBarry Smith #undef __FUNCT__ 236399cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_SeqBAIJ" 236499cafbc1SBarry Smith PetscErrorCode MatRealPart_SeqBAIJ(Mat A) 236599cafbc1SBarry Smith { 236699cafbc1SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 236799cafbc1SBarry Smith PetscInt i,nz = a->bs2*a->i[a->mbs]; 2368dd6ea824SBarry Smith MatScalar *aa = a->a; 236999cafbc1SBarry Smith 237099cafbc1SBarry Smith PetscFunctionBegin; 237199cafbc1SBarry Smith for (i=0; i<nz; i++) aa[i] = PetscRealPart(aa[i]); 237299cafbc1SBarry Smith PetscFunctionReturn(0); 237399cafbc1SBarry Smith } 237499cafbc1SBarry Smith 237599cafbc1SBarry Smith #undef __FUNCT__ 237699cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_SeqBAIJ" 237799cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_SeqBAIJ(Mat A) 237899cafbc1SBarry Smith { 237999cafbc1SBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 238099cafbc1SBarry Smith PetscInt i,nz = a->bs2*a->i[a->mbs]; 2381dd6ea824SBarry Smith MatScalar *aa = a->a; 238299cafbc1SBarry Smith 238399cafbc1SBarry Smith PetscFunctionBegin; 238499cafbc1SBarry Smith for (i=0; i<nz; i++) aa[i] = PetscImaginaryPart(aa[i]); 238599cafbc1SBarry Smith PetscFunctionReturn(0); 238699cafbc1SBarry Smith } 238799cafbc1SBarry Smith 238899cafbc1SBarry Smith 23892593348eSBarry Smith /* -------------------------------------------------------------------*/ 2390cc2dc46cSBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_SeqBAIJ, 2391cc2dc46cSBarry Smith MatGetRow_SeqBAIJ, 2392cc2dc46cSBarry Smith MatRestoreRow_SeqBAIJ, 2393cc2dc46cSBarry Smith MatMult_SeqBAIJ_N, 239497304618SKris Buschelman /* 4*/ MatMultAdd_SeqBAIJ_N, 23957c922b88SBarry Smith MatMultTranspose_SeqBAIJ, 23967c922b88SBarry Smith MatMultTransposeAdd_SeqBAIJ, 2397cc2dc46cSBarry Smith MatSolve_SeqBAIJ_N, 2398cc2dc46cSBarry Smith 0, 2399cc2dc46cSBarry Smith 0, 240097304618SKris Buschelman /*10*/ 0, 2401cc2dc46cSBarry Smith MatLUFactor_SeqBAIJ, 2402cc2dc46cSBarry Smith 0, 2403b6490206SBarry Smith 0, 2404f2501298SSatish Balay MatTranspose_SeqBAIJ, 240597304618SKris Buschelman /*15*/ MatGetInfo_SeqBAIJ, 2406cc2dc46cSBarry Smith MatEqual_SeqBAIJ, 2407cc2dc46cSBarry Smith MatGetDiagonal_SeqBAIJ, 2408cc2dc46cSBarry Smith MatDiagonalScale_SeqBAIJ, 2409cc2dc46cSBarry Smith MatNorm_SeqBAIJ, 241097304618SKris Buschelman /*20*/ 0, 2411cc2dc46cSBarry Smith MatAssemblyEnd_SeqBAIJ, 2412cc2dc46cSBarry Smith 0, 2413cc2dc46cSBarry Smith MatSetOption_SeqBAIJ, 2414cc2dc46cSBarry Smith MatZeroEntries_SeqBAIJ, 241597304618SKris Buschelman /*25*/ MatZeroRows_SeqBAIJ, 2416cc2dc46cSBarry Smith MatLUFactorSymbolic_SeqBAIJ, 2417cc2dc46cSBarry Smith MatLUFactorNumeric_SeqBAIJ_N, 2418c05c3958SHong Zhang MatCholeskyFactorSymbolic_SeqBAIJ, 2419c05c3958SHong Zhang MatCholeskyFactorNumeric_SeqBAIJ_N, 242097304618SKris Buschelman /*30*/ MatSetUpPreallocation_SeqBAIJ, 2421cc2dc46cSBarry Smith MatILUFactorSymbolic_SeqBAIJ, 2422c05c3958SHong Zhang MatICCFactorSymbolic_SeqBAIJ, 2423f2a5309cSSatish Balay MatGetArray_SeqBAIJ, 2424f2a5309cSSatish Balay MatRestoreArray_SeqBAIJ, 242597304618SKris Buschelman /*35*/ MatDuplicate_SeqBAIJ, 2426cc2dc46cSBarry Smith 0, 2427cc2dc46cSBarry Smith 0, 2428cc2dc46cSBarry Smith MatILUFactor_SeqBAIJ, 2429cc2dc46cSBarry Smith 0, 243097304618SKris Buschelman /*40*/ MatAXPY_SeqBAIJ, 2431cc2dc46cSBarry Smith MatGetSubMatrices_SeqBAIJ, 2432cc2dc46cSBarry Smith MatIncreaseOverlap_SeqBAIJ, 2433cc2dc46cSBarry Smith MatGetValues_SeqBAIJ, 24343c896bc6SHong Zhang MatCopy_SeqBAIJ, 24358c07d4e3SBarry Smith /*45*/ 0, 2436cc2dc46cSBarry Smith MatScale_SeqBAIJ, 2437cc2dc46cSBarry Smith 0, 2438cc2dc46cSBarry Smith 0, 2439cc2dc46cSBarry Smith 0, 2440521d7252SBarry Smith /*50*/ 0, 24413b2fbd54SBarry Smith MatGetRowIJ_SeqBAIJ, 244292c4ed94SBarry Smith MatRestoreRowIJ_SeqBAIJ, 2443cc2dc46cSBarry Smith 0, 2444cc2dc46cSBarry Smith 0, 244597304618SKris Buschelman /*55*/ 0, 2446cc2dc46cSBarry Smith 0, 2447cc2dc46cSBarry Smith 0, 2448cc2dc46cSBarry Smith 0, 2449d3825aa8SBarry Smith MatSetValuesBlocked_SeqBAIJ, 245097304618SKris Buschelman /*60*/ MatGetSubMatrix_SeqBAIJ, 2451b9b97703SBarry Smith MatDestroy_SeqBAIJ, 2452b9b97703SBarry Smith MatView_SeqBAIJ, 2453357abbc8SBarry Smith 0, 2454273d9f13SBarry Smith 0, 245597304618SKris Buschelman /*65*/ 0, 2456273d9f13SBarry Smith 0, 2457273d9f13SBarry Smith 0, 2458273d9f13SBarry Smith 0, 2459273d9f13SBarry Smith 0, 2460985db425SBarry Smith /*70*/ MatGetRowMaxAbs_SeqBAIJ, 246197304618SKris Buschelman MatConvert_Basic, 2462273d9f13SBarry Smith 0, 246397304618SKris Buschelman 0, 246497304618SKris Buschelman 0, 246597304618SKris Buschelman /*75*/ 0, 246697304618SKris Buschelman 0, 246797304618SKris Buschelman 0, 246897304618SKris Buschelman 0, 246997304618SKris Buschelman 0, 247097304618SKris Buschelman /*80*/ 0, 247197304618SKris Buschelman 0, 247297304618SKris Buschelman 0, 247397304618SKris Buschelman 0, 2474865e5f61SKris Buschelman MatLoad_SeqBAIJ, 2475865e5f61SKris Buschelman /*85*/ 0, 2476b01c7715SBarry Smith 0, 2477b01c7715SBarry Smith 0, 2478b01c7715SBarry Smith 0, 2479865e5f61SKris Buschelman 0, 2480865e5f61SKris Buschelman /*90*/ 0, 2481865e5f61SKris Buschelman 0, 2482865e5f61SKris Buschelman 0, 2483865e5f61SKris Buschelman 0, 2484865e5f61SKris Buschelman 0, 2485865e5f61SKris Buschelman /*95*/ 0, 2486865e5f61SKris Buschelman 0, 2487865e5f61SKris Buschelman 0, 248899cafbc1SBarry Smith 0, 248999cafbc1SBarry Smith 0, 249099cafbc1SBarry Smith /*100*/0, 249199cafbc1SBarry Smith 0, 249299cafbc1SBarry Smith 0, 249399cafbc1SBarry Smith 0, 249499cafbc1SBarry Smith 0, 249599cafbc1SBarry Smith /*105*/0, 249699cafbc1SBarry Smith MatRealPart_SeqBAIJ, 24972af78befSBarry Smith MatImaginaryPart_SeqBAIJ, 24982af78befSBarry Smith 0, 24992af78befSBarry Smith 0, 25002af78befSBarry Smith /*110*/0, 25012af78befSBarry Smith 0, 25022af78befSBarry Smith 0, 25032af78befSBarry Smith 0, 25042af78befSBarry Smith MatMissingDiagonal_SeqBAIJ 25052af78befSBarry Smith /*115*/ 250699cafbc1SBarry Smith }; 25072593348eSBarry Smith 25083e90b805SBarry Smith EXTERN_C_BEGIN 25094a2ae208SSatish Balay #undef __FUNCT__ 25104a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_SeqBAIJ" 2511be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_SeqBAIJ(Mat mat) 25123e90b805SBarry Smith { 25133e90b805SBarry Smith Mat_SeqBAIJ *aij = (Mat_SeqBAIJ *)mat->data; 2514899cda47SBarry Smith PetscInt nz = aij->i[mat->rmap.N]*mat->rmap.bs*aij->bs2; 2515dfbe8321SBarry Smith PetscErrorCode ierr; 25163e90b805SBarry Smith 25173e90b805SBarry Smith PetscFunctionBegin; 25183e90b805SBarry Smith if (aij->nonew != 1) { 2519512a5fc5SBarry Smith SETERRQ(PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first"); 25203e90b805SBarry Smith } 25213e90b805SBarry Smith 25223e90b805SBarry Smith /* allocate space for values if not already there */ 25233e90b805SBarry Smith if (!aij->saved_values) { 252487828ca2SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&aij->saved_values);CHKERRQ(ierr); 25253e90b805SBarry Smith } 25263e90b805SBarry Smith 25273e90b805SBarry Smith /* copy values over */ 252887828ca2SBarry Smith ierr = PetscMemcpy(aij->saved_values,aij->a,nz*sizeof(PetscScalar));CHKERRQ(ierr); 25293e90b805SBarry Smith PetscFunctionReturn(0); 25303e90b805SBarry Smith } 25313e90b805SBarry Smith EXTERN_C_END 25323e90b805SBarry Smith 25333e90b805SBarry Smith EXTERN_C_BEGIN 25344a2ae208SSatish Balay #undef __FUNCT__ 25354a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_SeqBAIJ" 2536be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_SeqBAIJ(Mat mat) 25373e90b805SBarry Smith { 25383e90b805SBarry Smith Mat_SeqBAIJ *aij = (Mat_SeqBAIJ *)mat->data; 25396849ba73SBarry Smith PetscErrorCode ierr; 2540899cda47SBarry Smith PetscInt nz = aij->i[mat->rmap.N]*mat->rmap.bs*aij->bs2; 25413e90b805SBarry Smith 25423e90b805SBarry Smith PetscFunctionBegin; 25433e90b805SBarry Smith if (aij->nonew != 1) { 2544512a5fc5SBarry Smith SETERRQ(PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first"); 25453e90b805SBarry Smith } 25463e90b805SBarry Smith if (!aij->saved_values) { 2547634064b4SBarry Smith SETERRQ(PETSC_ERR_ORDER,"Must call MatStoreValues(A);first"); 25483e90b805SBarry Smith } 25493e90b805SBarry Smith 25503e90b805SBarry Smith /* copy values over */ 255187828ca2SBarry Smith ierr = PetscMemcpy(aij->a,aij->saved_values,nz*sizeof(PetscScalar));CHKERRQ(ierr); 25523e90b805SBarry Smith PetscFunctionReturn(0); 25533e90b805SBarry Smith } 25543e90b805SBarry Smith EXTERN_C_END 25553e90b805SBarry Smith 2556273d9f13SBarry Smith EXTERN_C_BEGIN 2557f69a0ea3SMatthew Knepley extern PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_SeqBAIJ_SeqAIJ(Mat, MatType,MatReuse,Mat*); 2558f69a0ea3SMatthew Knepley extern PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_SeqBAIJ_SeqSBAIJ(Mat, MatType,MatReuse,Mat*); 2559273d9f13SBarry Smith EXTERN_C_END 2560273d9f13SBarry Smith 2561273d9f13SBarry Smith EXTERN_C_BEGIN 25624a2ae208SSatish Balay #undef __FUNCT__ 2563a23d5eceSKris Buschelman #define __FUNCT__ "MatSeqBAIJSetPreallocation_SeqBAIJ" 2564be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJSetPreallocation_SeqBAIJ(Mat B,PetscInt bs,PetscInt nz,PetscInt *nnz) 2565a23d5eceSKris Buschelman { 2566a23d5eceSKris Buschelman Mat_SeqBAIJ *b; 25676849ba73SBarry Smith PetscErrorCode ierr; 2568a96a251dSBarry Smith PetscInt i,mbs,nbs,bs2,newbs = bs; 2569ab93d7beSBarry Smith PetscTruth flg,skipallocation = PETSC_FALSE; 2570a23d5eceSKris Buschelman 2571a23d5eceSKris Buschelman PetscFunctionBegin; 2572a23d5eceSKris Buschelman 2573ab93d7beSBarry Smith if (nz == MAT_SKIP_ALLOCATION) { 2574ab93d7beSBarry Smith skipallocation = PETSC_TRUE; 2575ab93d7beSBarry Smith nz = 0; 2576ab93d7beSBarry Smith } 25778c07d4e3SBarry Smith 25787adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Block options for SEQBAIJ matrix 1","Mat");CHKERRQ(ierr); 257917667f90SBarry Smith ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatSeqBAIJSetPreallocation",bs,&newbs,PETSC_NULL);CHKERRQ(ierr); 25808c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 25818c07d4e3SBarry Smith 2582a23d5eceSKris Buschelman if (nnz && newbs != bs) { 2583634064b4SBarry Smith SETERRQ(PETSC_ERR_ARG_WRONG,"Cannot change blocksize from command line if setting nnz"); 2584a23d5eceSKris Buschelman } 2585a23d5eceSKris Buschelman bs = newbs; 2586a23d5eceSKris Buschelman 2587899cda47SBarry Smith B->rmap.bs = B->cmap.bs = bs; 25886148ca0dSBarry Smith ierr = PetscMapSetUp(&B->rmap);CHKERRQ(ierr); 25896148ca0dSBarry Smith ierr = PetscMapSetUp(&B->cmap);CHKERRQ(ierr); 2590899cda47SBarry Smith 2591899cda47SBarry Smith B->preallocated = PETSC_TRUE; 2592899cda47SBarry Smith 2593899cda47SBarry Smith mbs = B->rmap.n/bs; 2594899cda47SBarry Smith nbs = B->cmap.n/bs; 2595a23d5eceSKris Buschelman bs2 = bs*bs; 2596a23d5eceSKris Buschelman 2597899cda47SBarry Smith if (mbs*bs!=B->rmap.n || nbs*bs!=B->cmap.n) { 2598899cda47SBarry Smith SETERRQ3(PETSC_ERR_ARG_SIZ,"Number rows %D, cols %D must be divisible by blocksize %D",B->rmap.N,B->cmap.n,bs); 2599a23d5eceSKris Buschelman } 2600a23d5eceSKris Buschelman 2601a23d5eceSKris Buschelman if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 5; 260277431f27SBarry Smith if (nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"nz cannot be less than 0: value %D",nz); 2603a23d5eceSKris Buschelman if (nnz) { 2604a23d5eceSKris Buschelman for (i=0; i<mbs; i++) { 260577431f27SBarry Smith if (nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"nnz cannot be less than 0: local row %D value %D",i,nnz[i]); 260677431f27SBarry Smith if (nnz[i] > nbs) SETERRQ3(PETSC_ERR_ARG_OUTOFRANGE,"nnz cannot be greater than block row length: local row %D value %D rowlength %D",i,nnz[i],nbs); 2607a23d5eceSKris Buschelman } 2608a23d5eceSKris Buschelman } 2609a23d5eceSKris Buschelman 2610a23d5eceSKris Buschelman b = (Mat_SeqBAIJ*)B->data; 26117adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Optimize options for SEQBAIJ matrix 2 ","Mat");CHKERRQ(ierr); 26128c07d4e3SBarry Smith ierr = PetscOptionsTruth("-mat_no_unroll","Do not optimize for block size (slow)",PETSC_NULL,PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr); 26138c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 26148c07d4e3SBarry Smith 2615a23d5eceSKris Buschelman B->ops->solve = MatSolve_SeqBAIJ_Update; 2616a23d5eceSKris Buschelman B->ops->solvetranspose = MatSolveTranspose_SeqBAIJ_Update; 2617a23d5eceSKris Buschelman if (!flg) { 2618a23d5eceSKris Buschelman switch (bs) { 2619a23d5eceSKris Buschelman case 1: 2620a23d5eceSKris Buschelman B->ops->lufactornumeric = MatLUFactorNumeric_SeqBAIJ_1; 2621a23d5eceSKris Buschelman B->ops->mult = MatMult_SeqBAIJ_1; 2622a23d5eceSKris Buschelman B->ops->multadd = MatMultAdd_SeqBAIJ_1; 26236d3beeddSMatthew Knepley B->ops->pbrelax = MatPBRelax_SeqBAIJ_1; 2624a23d5eceSKris Buschelman break; 2625a23d5eceSKris Buschelman case 2: 2626a23d5eceSKris Buschelman B->ops->lufactornumeric = MatLUFactorNumeric_SeqBAIJ_2; 2627a23d5eceSKris Buschelman B->ops->mult = MatMult_SeqBAIJ_2; 2628a23d5eceSKris Buschelman B->ops->multadd = MatMultAdd_SeqBAIJ_2; 2629b01c7715SBarry Smith B->ops->pbrelax = MatPBRelax_SeqBAIJ_2; 2630a23d5eceSKris Buschelman break; 2631a23d5eceSKris Buschelman case 3: 2632a23d5eceSKris Buschelman B->ops->lufactornumeric = MatLUFactorNumeric_SeqBAIJ_3; 2633a23d5eceSKris Buschelman B->ops->mult = MatMult_SeqBAIJ_3; 2634a23d5eceSKris Buschelman B->ops->multadd = MatMultAdd_SeqBAIJ_3; 2635b01c7715SBarry Smith B->ops->pbrelax = MatPBRelax_SeqBAIJ_3; 2636a23d5eceSKris Buschelman break; 2637a23d5eceSKris Buschelman case 4: 2638a23d5eceSKris Buschelman B->ops->lufactornumeric = MatLUFactorNumeric_SeqBAIJ_4; 2639a23d5eceSKris Buschelman B->ops->mult = MatMult_SeqBAIJ_4; 2640a23d5eceSKris Buschelman B->ops->multadd = MatMultAdd_SeqBAIJ_4; 2641b01c7715SBarry Smith B->ops->pbrelax = MatPBRelax_SeqBAIJ_4; 2642a23d5eceSKris Buschelman break; 2643a23d5eceSKris Buschelman case 5: 2644a23d5eceSKris Buschelman B->ops->lufactornumeric = MatLUFactorNumeric_SeqBAIJ_5; 2645a23d5eceSKris Buschelman B->ops->mult = MatMult_SeqBAIJ_5; 2646a23d5eceSKris Buschelman B->ops->multadd = MatMultAdd_SeqBAIJ_5; 2647b01c7715SBarry Smith B->ops->pbrelax = MatPBRelax_SeqBAIJ_5; 2648a23d5eceSKris Buschelman break; 2649a23d5eceSKris Buschelman case 6: 2650a23d5eceSKris Buschelman B->ops->lufactornumeric = MatLUFactorNumeric_SeqBAIJ_6; 2651a23d5eceSKris Buschelman B->ops->mult = MatMult_SeqBAIJ_6; 2652a23d5eceSKris Buschelman B->ops->multadd = MatMultAdd_SeqBAIJ_6; 26536d3beeddSMatthew Knepley B->ops->pbrelax = MatPBRelax_SeqBAIJ_6; 2654a23d5eceSKris Buschelman break; 2655a23d5eceSKris Buschelman case 7: 2656a23d5eceSKris Buschelman B->ops->lufactornumeric = MatLUFactorNumeric_SeqBAIJ_7; 2657a23d5eceSKris Buschelman B->ops->mult = MatMult_SeqBAIJ_7; 2658a23d5eceSKris Buschelman B->ops->multadd = MatMultAdd_SeqBAIJ_7; 26596d3beeddSMatthew Knepley B->ops->pbrelax = MatPBRelax_SeqBAIJ_7; 2660a23d5eceSKris Buschelman break; 2661a23d5eceSKris Buschelman default: 2662a23d5eceSKris Buschelman B->ops->lufactornumeric = MatLUFactorNumeric_SeqBAIJ_N; 2663a23d5eceSKris Buschelman B->ops->mult = MatMult_SeqBAIJ_N; 2664a23d5eceSKris Buschelman B->ops->multadd = MatMultAdd_SeqBAIJ_N; 2665a23d5eceSKris Buschelman break; 2666a23d5eceSKris Buschelman } 2667a23d5eceSKris Buschelman } 2668899cda47SBarry Smith B->rmap.bs = bs; 2669a23d5eceSKris Buschelman b->mbs = mbs; 2670a23d5eceSKris Buschelman b->nbs = nbs; 2671ab93d7beSBarry Smith if (!skipallocation) { 26722ee49352SLisandro Dalcin if (!b->imax) { 2673ab93d7beSBarry Smith ierr = PetscMalloc2(mbs,PetscInt,&b->imax,mbs,PetscInt,&b->ilen);CHKERRQ(ierr); 26742ee49352SLisandro Dalcin } 2675ab93d7beSBarry Smith /* b->ilen will count nonzeros in each block row so far. */ 2676ab93d7beSBarry Smith for (i=0; i<mbs; i++) { b->ilen[i] = 0;} 2677a23d5eceSKris Buschelman if (!nnz) { 2678a23d5eceSKris Buschelman if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 5; 2679a23d5eceSKris Buschelman else if (nz <= 0) nz = 1; 2680a23d5eceSKris Buschelman for (i=0; i<mbs; i++) b->imax[i] = nz; 2681a23d5eceSKris Buschelman nz = nz*mbs; 2682a23d5eceSKris Buschelman } else { 2683a23d5eceSKris Buschelman nz = 0; 2684a23d5eceSKris Buschelman for (i=0; i<mbs; i++) {b->imax[i] = nnz[i]; nz += nnz[i];} 2685a23d5eceSKris Buschelman } 2686a23d5eceSKris Buschelman 2687a23d5eceSKris Buschelman /* allocate the matrix space */ 26882ee49352SLisandro Dalcin ierr = MatSeqXAIJFreeAIJ(B,&b->a,&b->j,&b->i);CHKERRQ(ierr); 2689899cda47SBarry Smith ierr = PetscMalloc3(bs2*nz,PetscScalar,&b->a,nz,PetscInt,&b->j,B->rmap.N+1,PetscInt,&b->i);CHKERRQ(ierr); 26902ee49352SLisandro Dalcin ierr = PetscLogObjectMemory(B,(B->rmap.N+1)*sizeof(PetscInt)+nz*(bs2*sizeof(PetscScalar)+sizeof(PetscInt)));CHKERRQ(ierr); 2691a23d5eceSKris Buschelman ierr = PetscMemzero(b->a,nz*bs2*sizeof(MatScalar));CHKERRQ(ierr); 2692c1ac3661SBarry Smith ierr = PetscMemzero(b->j,nz*sizeof(PetscInt));CHKERRQ(ierr); 2693a23d5eceSKris Buschelman b->singlemalloc = PETSC_TRUE; 2694a23d5eceSKris Buschelman b->i[0] = 0; 2695a23d5eceSKris Buschelman for (i=1; i<mbs+1; i++) { 2696a23d5eceSKris Buschelman b->i[i] = b->i[i-1] + b->imax[i-1]; 2697a23d5eceSKris Buschelman } 2698e6b907acSBarry Smith b->free_a = PETSC_TRUE; 2699e6b907acSBarry Smith b->free_ij = PETSC_TRUE; 2700e811da20SHong Zhang } else { 2701e6b907acSBarry Smith b->free_a = PETSC_FALSE; 2702e6b907acSBarry Smith b->free_ij = PETSC_FALSE; 2703ab93d7beSBarry Smith } 2704a23d5eceSKris Buschelman 2705899cda47SBarry Smith B->rmap.bs = bs; 2706a23d5eceSKris Buschelman b->bs2 = bs2; 2707a23d5eceSKris Buschelman b->mbs = mbs; 2708a23d5eceSKris Buschelman b->nz = 0; 2709a23d5eceSKris Buschelman b->maxnz = nz*bs2; 2710a23d5eceSKris Buschelman B->info.nz_unneeded = (PetscReal)b->maxnz; 2711a23d5eceSKris Buschelman PetscFunctionReturn(0); 2712a23d5eceSKris Buschelman } 2713a23d5eceSKris Buschelman EXTERN_C_END 2714a23d5eceSKris Buschelman 27150bad9183SKris Buschelman /*MC 2716fafad747SKris Buschelman MATSEQBAIJ - MATSEQBAIJ = "seqbaij" - A matrix type to be used for sequential block sparse matrices, based on 27170bad9183SKris Buschelman block sparse compressed row format. 27180bad9183SKris Buschelman 27190bad9183SKris Buschelman Options Database Keys: 27200bad9183SKris Buschelman . -mat_type seqbaij - sets the matrix type to "seqbaij" during a call to MatSetFromOptions() 27210bad9183SKris Buschelman 27220bad9183SKris Buschelman Level: beginner 27230bad9183SKris Buschelman 2724f0c06035SSatish Balay .seealso: MatCreateSeqBAIJ() 27250bad9183SKris Buschelman M*/ 27260bad9183SKris Buschelman 2727a23d5eceSKris Buschelman EXTERN_C_BEGIN 2728a23d5eceSKris Buschelman #undef __FUNCT__ 27294a2ae208SSatish Balay #define __FUNCT__ "MatCreate_SeqBAIJ" 2730be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SeqBAIJ(Mat B) 27312593348eSBarry Smith { 2732dfbe8321SBarry Smith PetscErrorCode ierr; 2733c1ac3661SBarry Smith PetscMPIInt size; 2734b6490206SBarry Smith Mat_SeqBAIJ *b; 27353b2fbd54SBarry Smith 27363a40ed3dSBarry Smith PetscFunctionBegin; 27377adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)B)->comm,&size);CHKERRQ(ierr); 273829bbc08cSBarry Smith if (size > 1) SETERRQ(PETSC_ERR_ARG_WRONG,"Comm must be of size 1"); 2739b6490206SBarry Smith 274038f2d2fdSLisandro Dalcin ierr = PetscNewLog(B,Mat_SeqBAIJ,&b);CHKERRQ(ierr); 2741b0a32e0cSBarry Smith B->data = (void*)b; 2742549d3d68SSatish Balay ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 27432593348eSBarry Smith B->factor = 0; 274490f02eecSBarry Smith B->mapping = 0; 27452593348eSBarry Smith b->row = 0; 27462593348eSBarry Smith b->col = 0; 2747e51c0b9cSSatish Balay b->icol = 0; 27482593348eSBarry Smith b->reallocs = 0; 27493e90b805SBarry Smith b->saved_values = 0; 27502593348eSBarry Smith 2751c4992f7dSBarry Smith b->roworiented = PETSC_TRUE; 27522593348eSBarry Smith b->nonew = 0; 27532593348eSBarry Smith b->diag = 0; 27542593348eSBarry Smith b->solve_work = 0; 2755de6a44a3SBarry Smith b->mult_work = 0; 27562a1b7f2aSHong Zhang B->spptr = 0; 27570e6d2581SBarry Smith B->info.nz_unneeded = (PetscReal)b->maxnz; 2758883fce79SBarry Smith b->keepzeroedrows = PETSC_FALSE; 2759c4319e64SHong Zhang b->xtoy = 0; 2760c4319e64SHong Zhang b->XtoY = 0; 276173e7a558SHong Zhang b->compressedrow.use = PETSC_FALSE; 276226e093fcSHong Zhang b->compressedrow.nrows = 0; 276373e7a558SHong Zhang b->compressedrow.i = PETSC_NULL; 276473e7a558SHong Zhang b->compressedrow.rindex = PETSC_NULL; 276573e7a558SHong Zhang b->compressedrow.checked = PETSC_FALSE; 276688e51ccdSHong Zhang B->same_nonzero = PETSC_FALSE; 27674e220ebcSLois Curfman McInnes 276843516a2dSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSeqBAIJInvertBlockDiagonal_C", 276943516a2dSKris Buschelman "MatInvertBlockDiagonal_SeqBAIJ", 277043516a2dSKris Buschelman MatInvertBlockDiagonal_SeqBAIJ);CHKERRQ(ierr); 2771f1af5d2fSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 27723e90b805SBarry Smith "MatStoreValues_SeqBAIJ", 2773bc4b532fSSatish Balay MatStoreValues_SeqBAIJ);CHKERRQ(ierr); 2774f1af5d2fSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 27753e90b805SBarry Smith "MatRetrieveValues_SeqBAIJ", 2776bc4b532fSSatish Balay MatRetrieveValues_SeqBAIJ);CHKERRQ(ierr); 2777f1af5d2fSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSeqBAIJSetColumnIndices_C", 277827a8da17SBarry Smith "MatSeqBAIJSetColumnIndices_SeqBAIJ", 2779bc4b532fSSatish Balay MatSeqBAIJSetColumnIndices_SeqBAIJ);CHKERRQ(ierr); 2780a6175056SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_seqbaij_seqaij_C", 2781273d9f13SBarry Smith "MatConvert_SeqBAIJ_SeqAIJ", 2782273d9f13SBarry Smith MatConvert_SeqBAIJ_SeqAIJ);CHKERRQ(ierr); 2783a0e1a404SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_seqbaij_seqsbaij_C", 2784a0e1a404SHong Zhang "MatConvert_SeqBAIJ_SeqSBAIJ", 2785a0e1a404SHong Zhang MatConvert_SeqBAIJ_SeqSBAIJ);CHKERRQ(ierr); 2786a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSeqBAIJSetPreallocation_C", 2787a23d5eceSKris Buschelman "MatSeqBAIJSetPreallocation_SeqBAIJ", 2788a23d5eceSKris Buschelman MatSeqBAIJSetPreallocation_SeqBAIJ);CHKERRQ(ierr); 278917667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATSEQBAIJ);CHKERRQ(ierr); 27903a40ed3dSBarry Smith PetscFunctionReturn(0); 27912593348eSBarry Smith } 2792273d9f13SBarry Smith EXTERN_C_END 27932593348eSBarry Smith 27944a2ae208SSatish Balay #undef __FUNCT__ 27954a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_SeqBAIJ" 2796dfbe8321SBarry Smith PetscErrorCode MatDuplicate_SeqBAIJ(Mat A,MatDuplicateOption cpvalues,Mat *B) 27972593348eSBarry Smith { 27982593348eSBarry Smith Mat C; 2799b6490206SBarry Smith Mat_SeqBAIJ *c,*a = (Mat_SeqBAIJ*)A->data; 28006849ba73SBarry Smith PetscErrorCode ierr; 2801a96a251dSBarry Smith PetscInt i,mbs = a->mbs,nz = a->nz,bs2 = a->bs2; 2802de6a44a3SBarry Smith 28033a40ed3dSBarry Smith PetscFunctionBegin; 280429bbc08cSBarry Smith if (a->i[mbs] != nz) SETERRQ(PETSC_ERR_PLIB,"Corrupt matrix"); 28052593348eSBarry Smith 28062593348eSBarry Smith *B = 0; 28077adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)A)->comm,&C);CHKERRQ(ierr); 2808899cda47SBarry Smith ierr = MatSetSizes(C,A->rmap.N,A->cmap.n,A->rmap.N,A->cmap.n);CHKERRQ(ierr); 28097adad957SLisandro Dalcin ierr = MatSetType(C,((PetscObject)A)->type_name);CHKERRQ(ierr); 28101d5dac46SHong Zhang ierr = PetscMemcpy(C->ops,A->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 2811273d9f13SBarry Smith c = (Mat_SeqBAIJ*)C->data; 281244cd7ae7SLois Curfman McInnes 2813899cda47SBarry Smith C->rmap.N = A->rmap.N; 2814899cda47SBarry Smith C->cmap.N = A->cmap.N; 2815899cda47SBarry Smith C->rmap.bs = A->rmap.bs; 28169df24120SSatish Balay c->bs2 = a->bs2; 2817b6490206SBarry Smith c->mbs = a->mbs; 2818b6490206SBarry Smith c->nbs = a->nbs; 28192593348eSBarry Smith 282033b91e9fSSatish Balay ierr = PetscMalloc2(mbs,PetscInt,&c->imax,mbs,PetscInt,&c->ilen);CHKERRQ(ierr); 2821b6490206SBarry Smith for (i=0; i<mbs; i++) { 28222593348eSBarry Smith c->imax[i] = a->imax[i]; 28232593348eSBarry Smith c->ilen[i] = a->ilen[i]; 28242593348eSBarry Smith } 28252593348eSBarry Smith 28262593348eSBarry Smith /* allocate the matrix space */ 2827a96a251dSBarry Smith ierr = PetscMalloc3(bs2*nz,PetscScalar,&c->a,nz,PetscInt,&c->j,mbs+1,PetscInt,&c->i);CHKERRQ(ierr); 2828c4992f7dSBarry Smith c->singlemalloc = PETSC_TRUE; 2829c1ac3661SBarry Smith ierr = PetscMemcpy(c->i,a->i,(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr); 2830b6490206SBarry Smith if (mbs > 0) { 2831c1ac3661SBarry Smith ierr = PetscMemcpy(c->j,a->j,nz*sizeof(PetscInt));CHKERRQ(ierr); 28322e8a6d31SBarry Smith if (cpvalues == MAT_COPY_VALUES) { 2833549d3d68SSatish Balay ierr = PetscMemcpy(c->a,a->a,bs2*nz*sizeof(MatScalar));CHKERRQ(ierr); 28342e8a6d31SBarry Smith } else { 2835549d3d68SSatish Balay ierr = PetscMemzero(c->a,bs2*nz*sizeof(MatScalar));CHKERRQ(ierr); 28362593348eSBarry Smith } 28372593348eSBarry Smith } 28382593348eSBarry Smith c->roworiented = a->roworiented; 28392593348eSBarry Smith c->nonew = a->nonew; 28402593348eSBarry Smith 28412593348eSBarry Smith if (a->diag) { 2842c1ac3661SBarry Smith ierr = PetscMalloc((mbs+1)*sizeof(PetscInt),&c->diag);CHKERRQ(ierr); 284352e6d16bSBarry Smith ierr = PetscLogObjectMemory(C,(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr); 2844b6490206SBarry Smith for (i=0; i<mbs; i++) { 28452593348eSBarry Smith c->diag[i] = a->diag[i]; 28462593348eSBarry Smith } 284798305bb5SBarry Smith } else c->diag = 0; 28482593348eSBarry Smith c->nz = a->nz; 28492593348eSBarry Smith c->maxnz = a->maxnz; 28502593348eSBarry Smith c->solve_work = 0; 28517fc0212eSBarry Smith c->mult_work = 0; 2852e6b907acSBarry Smith c->free_a = PETSC_TRUE; 2853e6b907acSBarry Smith c->free_ij = PETSC_TRUE; 2854273d9f13SBarry Smith C->preallocated = PETSC_TRUE; 2855273d9f13SBarry Smith C->assembled = PETSC_TRUE; 285688e51ccdSHong Zhang 285788e51ccdSHong Zhang c->compressedrow.use = a->compressedrow.use; 285888e51ccdSHong Zhang c->compressedrow.nrows = a->compressedrow.nrows; 285988e51ccdSHong Zhang c->compressedrow.checked = a->compressedrow.checked; 286088e51ccdSHong Zhang if ( a->compressedrow.checked && a->compressedrow.use){ 286188e51ccdSHong Zhang i = a->compressedrow.nrows; 286288e51ccdSHong Zhang ierr = PetscMalloc((2*i+1)*sizeof(PetscInt),&c->compressedrow.i);CHKERRQ(ierr); 286388e51ccdSHong Zhang c->compressedrow.rindex = c->compressedrow.i + i + 1; 286488e51ccdSHong Zhang ierr = PetscMemcpy(c->compressedrow.i,a->compressedrow.i,(i+1)*sizeof(PetscInt));CHKERRQ(ierr); 286588e51ccdSHong Zhang ierr = PetscMemcpy(c->compressedrow.rindex,a->compressedrow.rindex,i*sizeof(PetscInt));CHKERRQ(ierr); 286688e51ccdSHong Zhang } else { 286788e51ccdSHong Zhang c->compressedrow.use = PETSC_FALSE; 286888e51ccdSHong Zhang c->compressedrow.i = PETSC_NULL; 286988e51ccdSHong Zhang c->compressedrow.rindex = PETSC_NULL; 287088e51ccdSHong Zhang } 287188e51ccdSHong Zhang C->same_nonzero = A->same_nonzero; 28722593348eSBarry Smith *B = C; 28737adad957SLisandro Dalcin ierr = PetscFListDuplicate(((PetscObject)A)->qlist,&((PetscObject)C)->qlist);CHKERRQ(ierr); 28743a40ed3dSBarry Smith PetscFunctionReturn(0); 28752593348eSBarry Smith } 28762593348eSBarry Smith 28774a2ae208SSatish Balay #undef __FUNCT__ 28784a2ae208SSatish Balay #define __FUNCT__ "MatLoad_SeqBAIJ" 2879f69a0ea3SMatthew Knepley PetscErrorCode MatLoad_SeqBAIJ(PetscViewer viewer, MatType type,Mat *A) 28802593348eSBarry Smith { 2881b6490206SBarry Smith Mat_SeqBAIJ *a; 28822593348eSBarry Smith Mat B; 28836849ba73SBarry Smith PetscErrorCode ierr; 2884b24ad042SBarry Smith PetscInt i,nz,header[4],*rowlengths=0,M,N,bs=1; 2885c1ac3661SBarry Smith PetscInt *mask,mbs,*jj,j,rowcount,nzcount,k,*browlengths,maskcount; 2886c1ac3661SBarry Smith PetscInt kmax,jcount,block,idx,point,nzcountb,extra_rows; 2887c1ac3661SBarry Smith PetscInt *masked,nmask,tmp,bs2,ishift; 2888b24ad042SBarry Smith PetscMPIInt size; 2889b24ad042SBarry Smith int fd; 289087828ca2SBarry Smith PetscScalar *aa; 289119bcc07fSBarry Smith MPI_Comm comm = ((PetscObject)viewer)->comm; 28922593348eSBarry Smith 28933a40ed3dSBarry Smith PetscFunctionBegin; 28948c07d4e3SBarry Smith ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading SEQBAIJ matrix","Mat");CHKERRQ(ierr); 28958c07d4e3SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr); 28968c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 2897de6a44a3SBarry Smith bs2 = bs*bs; 2898b6490206SBarry Smith 2899d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 290029bbc08cSBarry Smith if (size > 1) SETERRQ(PETSC_ERR_ARG_WRONG,"view must have one processor"); 2901b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 29020752156aSBarry Smith ierr = PetscBinaryRead(fd,header,4,PETSC_INT);CHKERRQ(ierr); 2903552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not Mat object"); 29042593348eSBarry Smith M = header[1]; N = header[2]; nz = header[3]; 29052593348eSBarry Smith 2906d64ed03dSBarry Smith if (header[3] < 0) { 290729bbc08cSBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as SeqBAIJ"); 2908d64ed03dSBarry Smith } 2909d64ed03dSBarry Smith 291029bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 291135aab85fSBarry Smith 291235aab85fSBarry Smith /* 291335aab85fSBarry Smith This code adds extra rows to make sure the number of rows is 291435aab85fSBarry Smith divisible by the blocksize 291535aab85fSBarry Smith */ 2916b6490206SBarry Smith mbs = M/bs; 291735aab85fSBarry Smith extra_rows = bs - M + bs*(mbs); 291835aab85fSBarry Smith if (extra_rows == bs) extra_rows = 0; 291935aab85fSBarry Smith else mbs++; 292035aab85fSBarry Smith if (extra_rows) { 29211e2582c4SBarry Smith ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 292235aab85fSBarry Smith } 2923b6490206SBarry Smith 29242593348eSBarry Smith /* read in row lengths */ 2925c1ac3661SBarry Smith ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 29260752156aSBarry Smith ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 292735aab85fSBarry Smith for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 29282593348eSBarry Smith 2929b6490206SBarry Smith /* read in column indices */ 2930c1ac3661SBarry Smith ierr = PetscMalloc((nz+extra_rows)*sizeof(PetscInt),&jj);CHKERRQ(ierr); 29310752156aSBarry Smith ierr = PetscBinaryRead(fd,jj,nz,PETSC_INT);CHKERRQ(ierr); 293235aab85fSBarry Smith for (i=0; i<extra_rows; i++) jj[nz+i] = M+i; 2933b6490206SBarry Smith 2934b6490206SBarry Smith /* loop over row lengths determining block row lengths */ 2935c1ac3661SBarry Smith ierr = PetscMalloc(mbs*sizeof(PetscInt),&browlengths);CHKERRQ(ierr); 2936c1ac3661SBarry Smith ierr = PetscMemzero(browlengths,mbs*sizeof(PetscInt));CHKERRQ(ierr); 2937c1ac3661SBarry Smith ierr = PetscMalloc(2*mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr); 2938c1ac3661SBarry Smith ierr = PetscMemzero(mask,mbs*sizeof(PetscInt));CHKERRQ(ierr); 293935aab85fSBarry Smith masked = mask + mbs; 2940b6490206SBarry Smith rowcount = 0; nzcount = 0; 2941b6490206SBarry Smith for (i=0; i<mbs; i++) { 294235aab85fSBarry Smith nmask = 0; 2943b6490206SBarry Smith for (j=0; j<bs; j++) { 2944b6490206SBarry Smith kmax = rowlengths[rowcount]; 2945b6490206SBarry Smith for (k=0; k<kmax; k++) { 294635aab85fSBarry Smith tmp = jj[nzcount++]/bs; 294735aab85fSBarry Smith if (!mask[tmp]) {masked[nmask++] = tmp; mask[tmp] = 1;} 2948b6490206SBarry Smith } 2949b6490206SBarry Smith rowcount++; 2950b6490206SBarry Smith } 295135aab85fSBarry Smith browlengths[i] += nmask; 295235aab85fSBarry Smith /* zero out the mask elements we set */ 295335aab85fSBarry Smith for (j=0; j<nmask; j++) mask[masked[j]] = 0; 2954b6490206SBarry Smith } 2955b6490206SBarry Smith 29562593348eSBarry Smith /* create our matrix */ 2957f69a0ea3SMatthew Knepley ierr = MatCreate(comm,&B); 2958f69a0ea3SMatthew Knepley ierr = MatSetSizes(B,PETSC_DECIDE,PETSC_DECIDE,M+extra_rows,N+extra_rows); 295978ae41b4SKris Buschelman ierr = MatSetType(B,type);CHKERRQ(ierr); 2960ab93d7beSBarry Smith ierr = MatSeqBAIJSetPreallocation_SeqBAIJ(B,bs,0,browlengths);CHKERRQ(ierr); 2961b6490206SBarry Smith a = (Mat_SeqBAIJ*)B->data; 29622593348eSBarry Smith 29632593348eSBarry Smith /* set matrix "i" values */ 2964de6a44a3SBarry Smith a->i[0] = 0; 2965b6490206SBarry Smith for (i=1; i<= mbs; i++) { 2966b6490206SBarry Smith a->i[i] = a->i[i-1] + browlengths[i-1]; 2967b6490206SBarry Smith a->ilen[i-1] = browlengths[i-1]; 29682593348eSBarry Smith } 2969b6490206SBarry Smith a->nz = 0; 2970b6490206SBarry Smith for (i=0; i<mbs; i++) a->nz += browlengths[i]; 29712593348eSBarry Smith 2972b6490206SBarry Smith /* read in nonzero values */ 297387828ca2SBarry Smith ierr = PetscMalloc((nz+extra_rows)*sizeof(PetscScalar),&aa);CHKERRQ(ierr); 29740752156aSBarry Smith ierr = PetscBinaryRead(fd,aa,nz,PETSC_SCALAR);CHKERRQ(ierr); 297535aab85fSBarry Smith for (i=0; i<extra_rows; i++) aa[nz+i] = 1.0; 2976b6490206SBarry Smith 2977b6490206SBarry Smith /* set "a" and "j" values into matrix */ 2978b6490206SBarry Smith nzcount = 0; jcount = 0; 2979b6490206SBarry Smith for (i=0; i<mbs; i++) { 2980b6490206SBarry Smith nzcountb = nzcount; 298135aab85fSBarry Smith nmask = 0; 2982b6490206SBarry Smith for (j=0; j<bs; j++) { 2983b6490206SBarry Smith kmax = rowlengths[i*bs+j]; 2984b6490206SBarry Smith for (k=0; k<kmax; k++) { 298535aab85fSBarry Smith tmp = jj[nzcount++]/bs; 298635aab85fSBarry Smith if (!mask[tmp]) { masked[nmask++] = tmp; mask[tmp] = 1;} 2987b6490206SBarry Smith } 2988b6490206SBarry Smith } 2989de6a44a3SBarry Smith /* sort the masked values */ 2990433994e6SBarry Smith ierr = PetscSortInt(nmask,masked);CHKERRQ(ierr); 2991de6a44a3SBarry Smith 2992b6490206SBarry Smith /* set "j" values into matrix */ 2993b6490206SBarry Smith maskcount = 1; 299435aab85fSBarry Smith for (j=0; j<nmask; j++) { 299535aab85fSBarry Smith a->j[jcount++] = masked[j]; 2996de6a44a3SBarry Smith mask[masked[j]] = maskcount++; 2997b6490206SBarry Smith } 2998b6490206SBarry Smith /* set "a" values into matrix */ 2999de6a44a3SBarry Smith ishift = bs2*a->i[i]; 3000b6490206SBarry Smith for (j=0; j<bs; j++) { 3001b6490206SBarry Smith kmax = rowlengths[i*bs+j]; 3002b6490206SBarry Smith for (k=0; k<kmax; k++) { 3003de6a44a3SBarry Smith tmp = jj[nzcountb]/bs ; 3004de6a44a3SBarry Smith block = mask[tmp] - 1; 3005de6a44a3SBarry Smith point = jj[nzcountb] - bs*tmp; 3006de6a44a3SBarry Smith idx = ishift + bs2*block + j + bs*point; 3007375fe846SBarry Smith a->a[idx] = (MatScalar)aa[nzcountb++]; 3008b6490206SBarry Smith } 3009b6490206SBarry Smith } 301035aab85fSBarry Smith /* zero out the mask elements we set */ 301135aab85fSBarry Smith for (j=0; j<nmask; j++) mask[masked[j]] = 0; 3012b6490206SBarry Smith } 301329bbc08cSBarry Smith if (jcount != a->nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Bad binary matrix"); 3014b6490206SBarry Smith 3015606d414cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 3016606d414cSSatish Balay ierr = PetscFree(browlengths);CHKERRQ(ierr); 3017606d414cSSatish Balay ierr = PetscFree(aa);CHKERRQ(ierr); 3018606d414cSSatish Balay ierr = PetscFree(jj);CHKERRQ(ierr); 3019606d414cSSatish Balay ierr = PetscFree(mask);CHKERRQ(ierr); 3020b6490206SBarry Smith 302178ae41b4SKris Buschelman ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 302278ae41b4SKris Buschelman ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 30239c01be13SBarry Smith ierr = MatView_Private(B);CHKERRQ(ierr); 302478ae41b4SKris Buschelman 302578ae41b4SKris Buschelman *A = B; 30263a40ed3dSBarry Smith PetscFunctionReturn(0); 30272593348eSBarry Smith } 30282593348eSBarry Smith 30294a2ae208SSatish Balay #undef __FUNCT__ 30304a2ae208SSatish Balay #define __FUNCT__ "MatCreateSeqBAIJ" 3031273d9f13SBarry Smith /*@C 3032273d9f13SBarry Smith MatCreateSeqBAIJ - Creates a sparse matrix in block AIJ (block 3033273d9f13SBarry Smith compressed row) format. For good matrix assembly performance the 3034273d9f13SBarry Smith user should preallocate the matrix storage by setting the parameter nz 3035273d9f13SBarry Smith (or the array nnz). By setting these parameters accurately, performance 3036273d9f13SBarry Smith during matrix assembly can be increased by more than a factor of 50. 30372593348eSBarry Smith 3038273d9f13SBarry Smith Collective on MPI_Comm 3039273d9f13SBarry Smith 3040273d9f13SBarry Smith Input Parameters: 3041273d9f13SBarry Smith + comm - MPI communicator, set to PETSC_COMM_SELF 3042273d9f13SBarry Smith . bs - size of block 3043273d9f13SBarry Smith . m - number of rows 3044273d9f13SBarry Smith . n - number of columns 304535d8aa7fSBarry Smith . nz - number of nonzero blocks per block row (same for all rows) 304635d8aa7fSBarry Smith - nnz - array containing the number of nonzero blocks in the various block rows 3047273d9f13SBarry Smith (possibly different for each block row) or PETSC_NULL 3048273d9f13SBarry Smith 3049273d9f13SBarry Smith Output Parameter: 3050273d9f13SBarry Smith . A - the matrix 3051273d9f13SBarry Smith 3052175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 3053175b88e8SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. This is definitely 3054175b88e8SBarry Smith true if you plan to use the external direct solvers such as SuperLU, MUMPS or Spooles. 3055175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 3056175b88e8SBarry Smith 3057273d9f13SBarry Smith Options Database Keys: 3058273d9f13SBarry Smith . -mat_no_unroll - uses code that does not unroll the loops in the 3059273d9f13SBarry Smith block calculations (much slower) 3060273d9f13SBarry Smith . -mat_block_size - size of the blocks to use 3061273d9f13SBarry Smith 3062273d9f13SBarry Smith Level: intermediate 3063273d9f13SBarry Smith 3064273d9f13SBarry Smith Notes: 3065d1be2dadSMatthew Knepley The number of rows and columns must be divisible by blocksize. 3066d1be2dadSMatthew Knepley 306749a6f317SBarry Smith If the nnz parameter is given then the nz parameter is ignored 306849a6f317SBarry Smith 306935d8aa7fSBarry Smith A nonzero block is any block that as 1 or more nonzeros in it 307035d8aa7fSBarry Smith 3071273d9f13SBarry Smith The block AIJ format is fully compatible with standard Fortran 77 3072273d9f13SBarry Smith storage. That is, the stored row and column indices can begin at 3073273d9f13SBarry Smith either one (as in Fortran) or zero. See the users' manual for details. 3074273d9f13SBarry Smith 3075273d9f13SBarry Smith Specify the preallocated storage with either nz or nnz (not both). 3076273d9f13SBarry Smith Set nz=PETSC_DEFAULT and nnz=PETSC_NULL for PETSc to control dynamic memory 3077273d9f13SBarry Smith allocation. For additional details, see the users manual chapter on 3078273d9f13SBarry Smith matrices. 3079273d9f13SBarry Smith 3080273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatCreateMPIBAIJ() 3081273d9f13SBarry Smith @*/ 3082be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateSeqBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt nz,const PetscInt nnz[],Mat *A) 3083273d9f13SBarry Smith { 3084dfbe8321SBarry Smith PetscErrorCode ierr; 3085273d9f13SBarry Smith 3086273d9f13SBarry Smith PetscFunctionBegin; 3087f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 3088f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,m,n);CHKERRQ(ierr); 3089273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr); 3090ab93d7beSBarry Smith ierr = MatSeqBAIJSetPreallocation_SeqBAIJ(*A,bs,nz,(PetscInt*)nnz);CHKERRQ(ierr); 3091273d9f13SBarry Smith PetscFunctionReturn(0); 3092273d9f13SBarry Smith } 3093273d9f13SBarry Smith 30944a2ae208SSatish Balay #undef __FUNCT__ 30954a2ae208SSatish Balay #define __FUNCT__ "MatSeqBAIJSetPreallocation" 3096273d9f13SBarry Smith /*@C 3097273d9f13SBarry Smith MatSeqBAIJSetPreallocation - Sets the block size and expected nonzeros 3098273d9f13SBarry Smith per row in the matrix. For good matrix assembly performance the 3099273d9f13SBarry Smith user should preallocate the matrix storage by setting the parameter nz 3100273d9f13SBarry Smith (or the array nnz). By setting these parameters accurately, performance 3101273d9f13SBarry Smith during matrix assembly can be increased by more than a factor of 50. 3102273d9f13SBarry Smith 3103273d9f13SBarry Smith Collective on MPI_Comm 3104273d9f13SBarry Smith 3105273d9f13SBarry Smith Input Parameters: 3106273d9f13SBarry Smith + A - the matrix 3107273d9f13SBarry Smith . bs - size of block 3108273d9f13SBarry Smith . nz - number of block nonzeros per block row (same for all rows) 3109273d9f13SBarry Smith - nnz - array containing the number of block nonzeros in the various block rows 3110273d9f13SBarry Smith (possibly different for each block row) or PETSC_NULL 3111273d9f13SBarry Smith 3112273d9f13SBarry Smith Options Database Keys: 3113273d9f13SBarry Smith . -mat_no_unroll - uses code that does not unroll the loops in the 3114273d9f13SBarry Smith block calculations (much slower) 3115273d9f13SBarry Smith . -mat_block_size - size of the blocks to use 3116273d9f13SBarry Smith 3117273d9f13SBarry Smith Level: intermediate 3118273d9f13SBarry Smith 3119273d9f13SBarry Smith Notes: 312049a6f317SBarry Smith If the nnz parameter is given then the nz parameter is ignored 312149a6f317SBarry Smith 3122aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 3123aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 3124aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 3125aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 3126aa95bbe8SBarry Smith 3127273d9f13SBarry Smith The block AIJ format is fully compatible with standard Fortran 77 3128273d9f13SBarry Smith storage. That is, the stored row and column indices can begin at 3129273d9f13SBarry Smith either one (as in Fortran) or zero. See the users' manual for details. 3130273d9f13SBarry Smith 3131273d9f13SBarry Smith Specify the preallocated storage with either nz or nnz (not both). 3132273d9f13SBarry Smith Set nz=PETSC_DEFAULT and nnz=PETSC_NULL for PETSc to control dynamic memory 3133273d9f13SBarry Smith allocation. For additional details, see the users manual chapter on 3134273d9f13SBarry Smith matrices. 3135273d9f13SBarry Smith 3136aa95bbe8SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatGetInfo() 3137273d9f13SBarry Smith @*/ 3138be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt nz,const PetscInt nnz[]) 3139273d9f13SBarry Smith { 3140c1ac3661SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[]); 3141273d9f13SBarry Smith 3142273d9f13SBarry Smith PetscFunctionBegin; 3143a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatSeqBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 3144a23d5eceSKris Buschelman if (f) { 3145a23d5eceSKris Buschelman ierr = (*f)(B,bs,nz,nnz);CHKERRQ(ierr); 3146273d9f13SBarry Smith } 3147273d9f13SBarry Smith PetscFunctionReturn(0); 3148273d9f13SBarry Smith } 3149a1d92eedSBarry Smith 3150c75a6043SHong Zhang #undef __FUNCT__ 3151c75a6043SHong Zhang #define __FUNCT__ "MatCreateSeqBAIJWithArrays" 3152c75a6043SHong Zhang /*@ 3153c75a6043SHong Zhang MatCreateSeqBAIJWithArrays - Creates an sequential BAIJ matrix using matrix elements 3154c75a6043SHong Zhang (upper triangular entries in CSR format) provided by the user. 3155c75a6043SHong Zhang 3156c75a6043SHong Zhang Collective on MPI_Comm 3157c75a6043SHong Zhang 3158c75a6043SHong Zhang Input Parameters: 3159c75a6043SHong Zhang + comm - must be an MPI communicator of size 1 3160c75a6043SHong Zhang . bs - size of block 3161c75a6043SHong Zhang . m - number of rows 3162c75a6043SHong Zhang . n - number of columns 3163c75a6043SHong Zhang . i - row indices 3164c75a6043SHong Zhang . j - column indices 3165c75a6043SHong Zhang - a - matrix values 3166c75a6043SHong Zhang 3167c75a6043SHong Zhang Output Parameter: 3168c75a6043SHong Zhang . mat - the matrix 3169c75a6043SHong Zhang 3170c75a6043SHong Zhang Level: intermediate 3171c75a6043SHong Zhang 3172c75a6043SHong Zhang Notes: 3173c75a6043SHong Zhang The i, j, and a arrays are not copied by this routine, the user must free these arrays 3174c75a6043SHong Zhang once the matrix is destroyed 3175c75a6043SHong Zhang 3176c75a6043SHong Zhang You cannot set new nonzero locations into this matrix, that will generate an error. 3177c75a6043SHong Zhang 3178c75a6043SHong Zhang The i and j indices are 0 based 3179c75a6043SHong Zhang 3180c75a6043SHong Zhang .seealso: MatCreate(), MatCreateMPIBAIJ(), MatCreateSeqBAIJ() 3181c75a6043SHong Zhang 3182c75a6043SHong Zhang @*/ 3183c75a6043SHong Zhang PetscErrorCode PETSCMAT_DLLEXPORT MatCreateSeqBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt* i,PetscInt*j,PetscScalar *a,Mat *mat) 3184c75a6043SHong Zhang { 3185c75a6043SHong Zhang PetscErrorCode ierr; 3186c75a6043SHong Zhang PetscInt ii; 3187c75a6043SHong Zhang Mat_SeqBAIJ *baij; 3188c75a6043SHong Zhang 3189c75a6043SHong Zhang PetscFunctionBegin; 3190c75a6043SHong Zhang if (bs != 1) SETERRQ1(PETSC_ERR_SUP,"block size %D > 1 is not supported yet",bs); 3191c75a6043SHong Zhang if (i[0]) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0"); 3192c75a6043SHong Zhang 3193c75a6043SHong Zhang ierr = MatCreate(comm,mat);CHKERRQ(ierr); 3194c75a6043SHong Zhang ierr = MatSetSizes(*mat,m,n,m,n);CHKERRQ(ierr); 3195c75a6043SHong Zhang ierr = MatSetType(*mat,MATSEQBAIJ);CHKERRQ(ierr); 3196c75a6043SHong Zhang ierr = MatSeqBAIJSetPreallocation_SeqBAIJ(*mat,bs,MAT_SKIP_ALLOCATION,0);CHKERRQ(ierr); 3197c75a6043SHong Zhang baij = (Mat_SeqBAIJ*)(*mat)->data; 3198c75a6043SHong Zhang ierr = PetscMalloc2(m,PetscInt,&baij->imax,m,PetscInt,&baij->ilen);CHKERRQ(ierr); 3199c75a6043SHong Zhang 3200c75a6043SHong Zhang baij->i = i; 3201c75a6043SHong Zhang baij->j = j; 3202c75a6043SHong Zhang baij->a = a; 3203c75a6043SHong Zhang baij->singlemalloc = PETSC_FALSE; 3204c75a6043SHong Zhang baij->nonew = -1; /*this indicates that inserting a new value in the matrix that generates a new nonzero is an error*/ 3205e6b907acSBarry Smith baij->free_a = PETSC_FALSE; 3206e6b907acSBarry Smith baij->free_ij = PETSC_FALSE; 3207c75a6043SHong Zhang 3208c75a6043SHong Zhang for (ii=0; ii<m; ii++) { 3209c75a6043SHong Zhang baij->ilen[ii] = baij->imax[ii] = i[ii+1] - i[ii]; 3210c75a6043SHong Zhang #if defined(PETSC_USE_DEBUG) 3211c75a6043SHong Zhang if (i[ii+1] - i[ii] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Negative row length in i (row indices) row = %d length = %d",ii,i[ii+1] - i[ii]); 3212c75a6043SHong Zhang #endif 3213c75a6043SHong Zhang } 3214c75a6043SHong Zhang #if defined(PETSC_USE_DEBUG) 3215c75a6043SHong Zhang for (ii=0; ii<baij->i[m]; ii++) { 3216c75a6043SHong Zhang if (j[ii] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Negative column index at location = %d index = %d",ii,j[ii]); 3217c75a6043SHong Zhang if (j[ii] > n - 1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column index to large at location = %d index = %d",ii,j[ii]); 3218c75a6043SHong Zhang } 3219c75a6043SHong Zhang #endif 3220c75a6043SHong Zhang 3221c75a6043SHong Zhang ierr = MatAssemblyBegin(*mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 3222c75a6043SHong Zhang ierr = MatAssemblyEnd(*mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 3223c75a6043SHong Zhang PetscFunctionReturn(0); 3224c75a6043SHong Zhang } 3225