1 #define PETSCMAT_DLL 2 3 /* 4 Defines the basic matrix operations for the BAIJ (compressed row) 5 matrix storage format. 6 */ 7 #include "../src/mat/impls/baij/seq/baij.h" 8 #include "../src/inline/spops.h" 9 #include "petscsys.h" /*I "petscmat.h" I*/ 10 11 #include "../src/inline/ilu.h" 12 13 #undef __FUNCT__ 14 #define __FUNCT__ "MatSeqBAIJInvertBlockDiagonal" 15 /*@ 16 MatSeqBAIJInvertBlockDiagonal - Inverts the block diagonal entries. 17 18 Collective on Mat 19 20 Input Parameters: 21 . mat - the matrix 22 23 Level: advanced 24 @*/ 25 PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJInvertBlockDiagonal(Mat mat) 26 { 27 PetscErrorCode ierr,(*f)(Mat); 28 29 PetscFunctionBegin; 30 PetscValidHeaderSpecific(mat,MAT_COOKIE,1); 31 if (!mat->assembled) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for unassembled matrix"); 32 if (mat->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 33 34 ierr = PetscObjectQueryFunction((PetscObject)mat,"MatSeqBAIJInvertBlockDiagonal_C",(void (**)(void))&f);CHKERRQ(ierr); 35 if (f) { 36 ierr = (*f)(mat);CHKERRQ(ierr); 37 } else { 38 SETERRQ(PETSC_ERR_SUP,"Currently only implemented for SeqBAIJ."); 39 } 40 PetscFunctionReturn(0); 41 } 42 43 EXTERN_C_BEGIN 44 #undef __FUNCT__ 45 #define __FUNCT__ "MatInvertBlockDiagonal_SeqBAIJ" 46 PetscErrorCode PETSCMAT_DLLEXPORT MatInvertBlockDiagonal_SeqBAIJ(Mat A) 47 { 48 Mat_SeqBAIJ *a = (Mat_SeqBAIJ*) A->data; 49 PetscErrorCode ierr; 50 PetscInt *diag_offset,i,bs = A->rmap->bs,mbs = a->mbs; 51 MatScalar *v = a->a,*odiag,*diag,*mdiag; 52 PetscReal shift = 0.0; 53 54 PetscFunctionBegin; 55 if (a->idiagvalid) PetscFunctionReturn(0); 56 ierr = MatMarkDiagonal_SeqBAIJ(A);CHKERRQ(ierr); 57 diag_offset = a->diag; 58 if (!a->idiag) { 59 ierr = PetscMalloc(2*bs*bs*mbs*sizeof(PetscScalar),&a->idiag);CHKERRQ(ierr); 60 } 61 diag = a->idiag; 62 mdiag = a->idiag+bs*bs*mbs; 63 /* factor and invert each block */ 64 switch (bs){ 65 case 2: 66 for (i=0; i<mbs; i++) { 67 odiag = v + 4*diag_offset[i]; 68 diag[0] = odiag[0]; diag[1] = odiag[1]; diag[2] = odiag[2]; diag[3] = odiag[3]; 69 mdiag[0] = odiag[0]; mdiag[1] = odiag[1]; mdiag[2] = odiag[2]; mdiag[3] = odiag[3]; 70 ierr = Kernel_A_gets_inverse_A_2(diag,shift);CHKERRQ(ierr); 71 diag += 4; 72 mdiag += 4; 73 } 74 break; 75 case 3: 76 for (i=0; i<mbs; i++) { 77 odiag = v + 9*diag_offset[i]; 78 diag[0] = odiag[0]; diag[1] = odiag[1]; diag[2] = odiag[2]; diag[3] = odiag[3]; 79 diag[4] = odiag[4]; diag[5] = odiag[5]; diag[6] = odiag[6]; diag[7] = odiag[7]; 80 diag[8] = odiag[8]; 81 mdiag[0] = odiag[0]; mdiag[1] = odiag[1]; mdiag[2] = odiag[2]; mdiag[3] = odiag[3]; 82 mdiag[4] = odiag[4]; mdiag[5] = odiag[5]; mdiag[6] = odiag[6]; mdiag[7] = odiag[7]; 83 mdiag[8] = odiag[8]; 84 ierr = Kernel_A_gets_inverse_A_3(diag,shift);CHKERRQ(ierr); 85 diag += 9; 86 mdiag += 9; 87 } 88 break; 89 case 4: 90 for (i=0; i<mbs; i++) { 91 odiag = v + 16*diag_offset[i]; 92 ierr = PetscMemcpy(diag,odiag,16*sizeof(PetscScalar));CHKERRQ(ierr); 93 ierr = PetscMemcpy(mdiag,odiag,16*sizeof(PetscScalar));CHKERRQ(ierr); 94 ierr = Kernel_A_gets_inverse_A_4(diag,shift);CHKERRQ(ierr); 95 diag += 16; 96 mdiag += 16; 97 } 98 break; 99 case 5: 100 for (i=0; i<mbs; i++) { 101 odiag = v + 25*diag_offset[i]; 102 ierr = PetscMemcpy(diag,odiag,25*sizeof(PetscScalar));CHKERRQ(ierr); 103 ierr = PetscMemcpy(mdiag,odiag,25*sizeof(PetscScalar));CHKERRQ(ierr); 104 ierr = Kernel_A_gets_inverse_A_5(diag,shift);CHKERRQ(ierr); 105 diag += 25; 106 mdiag += 25; 107 } 108 break; 109 default: 110 SETERRQ1(PETSC_ERR_SUP,"not supported for block size %D",bs); 111 } 112 a->idiagvalid = PETSC_TRUE; 113 PetscFunctionReturn(0); 114 } 115 EXTERN_C_END 116 117 #undef __FUNCT__ 118 #define __FUNCT__ "MatPBRelax_SeqBAIJ_1" 119 PetscErrorCode MatPBRelax_SeqBAIJ_1(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 120 { 121 Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 122 PetscScalar *x,x1,s1; 123 const PetscScalar *b; 124 const MatScalar *aa = a->a, *idiag,*mdiag,*v; 125 PetscErrorCode ierr; 126 PetscInt m = a->mbs,i,i2,nz,idx; 127 const PetscInt *diag,*ai = a->i,*aj = a->j,*vi; 128 129 PetscFunctionBegin; 130 if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat"); 131 its = its*lits; 132 if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 133 if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift"); 134 if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor"); 135 if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts"); 136 if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations"); 137 138 if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);} 139 140 diag = a->diag; 141 idiag = a->idiag; 142 ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 143 ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 144 145 if (flag & SOR_ZERO_INITIAL_GUESS) { 146 if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){ 147 x[0] = b[0]*idiag[0]; 148 i2 = 1; 149 idiag += 1; 150 for (i=1; i<m; i++) { 151 v = aa + ai[i]; 152 vi = aj + ai[i]; 153 nz = diag[i] - ai[i]; 154 s1 = b[i2]; 155 while (nz--) { 156 idx = (*vi++); 157 x1 = x[idx]; 158 s1 -= v[0]*x1; 159 v += 1; 160 } 161 x[i2] = idiag[0]*s1; 162 idiag += 1; 163 i2 += 1; 164 } 165 /* for logging purposes assume number of nonzero in lower half is 1/2 of total */ 166 ierr = PetscLogFlops(a->nz);CHKERRQ(ierr); 167 } 168 if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) && 169 (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) { 170 i2 = 0; 171 mdiag = a->idiag+a->mbs; 172 for (i=0; i<m; i++) { 173 x1 = x[i2]; 174 x[i2] = mdiag[0]*x1; 175 mdiag += 1; 176 i2 += 1; 177 } 178 ierr = PetscLogFlops(m);CHKERRQ(ierr); 179 } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) { 180 ierr = PetscMemcpy(x,b,A->rmap->N*sizeof(PetscScalar));CHKERRQ(ierr); 181 } 182 if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){ 183 idiag = a->idiag+a->mbs - 1; 184 i2 = m - 1; 185 x1 = x[i2]; 186 x[i2] = idiag[0]*x1; 187 idiag -= 1; 188 i2 -= 1; 189 for (i=m-2; i>=0; i--) { 190 v = aa + (diag[i]+1); 191 vi = aj + diag[i] + 1; 192 nz = ai[i+1] - diag[i] - 1; 193 s1 = x[i2]; 194 while (nz--) { 195 idx = (*vi++); 196 x1 = x[idx]; 197 s1 -= v[0]*x1; 198 v += 1; 199 } 200 x[i2] = idiag[0]*s1; 201 idiag -= 2; 202 i2 -= 1; 203 } 204 ierr = PetscLogFlops(a->nz);CHKERRQ(ierr); 205 } 206 } else { 207 SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess"); 208 } 209 ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 210 ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 211 PetscFunctionReturn(0); 212 } 213 214 #undef __FUNCT__ 215 #define __FUNCT__ "MatPBRelax_SeqBAIJ_2" 216 PetscErrorCode MatPBRelax_SeqBAIJ_2(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 217 { 218 Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 219 PetscScalar *x,x1,x2,s1,s2; 220 const PetscScalar *b; 221 const MatScalar *v,*aa = a->a, *idiag,*mdiag; 222 PetscErrorCode ierr; 223 PetscInt m = a->mbs,i,i2,nz,idx; 224 const PetscInt *diag,*ai = a->i,*aj = a->j,*vi; 225 226 PetscFunctionBegin; 227 if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat"); 228 its = its*lits; 229 if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 230 if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift"); 231 if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor"); 232 if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts"); 233 if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations"); 234 235 if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);} 236 237 diag = a->diag; 238 idiag = a->idiag; 239 ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 240 ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 241 242 if (flag & SOR_ZERO_INITIAL_GUESS) { 243 if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){ 244 x[0] = b[0]*idiag[0] + b[1]*idiag[2]; 245 x[1] = b[0]*idiag[1] + b[1]*idiag[3]; 246 i2 = 2; 247 idiag += 4; 248 for (i=1; i<m; i++) { 249 v = aa + 4*ai[i]; 250 vi = aj + ai[i]; 251 nz = diag[i] - ai[i]; 252 s1 = b[i2]; s2 = b[i2+1]; 253 while (nz--) { 254 idx = 2*(*vi++); 255 x1 = x[idx]; x2 = x[1+idx]; 256 s1 -= v[0]*x1 + v[2]*x2; 257 s2 -= v[1]*x1 + v[3]*x2; 258 v += 4; 259 } 260 x[i2] = idiag[0]*s1 + idiag[2]*s2; 261 x[i2+1] = idiag[1]*s1 + idiag[3]*s2; 262 idiag += 4; 263 i2 += 2; 264 } 265 /* for logging purposes assume number of nonzero in lower half is 1/2 of total */ 266 ierr = PetscLogFlops(4.0*(a->nz));CHKERRQ(ierr); 267 } 268 if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) && 269 (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) { 270 i2 = 0; 271 mdiag = a->idiag+4*a->mbs; 272 for (i=0; i<m; i++) { 273 x1 = x[i2]; x2 = x[i2+1]; 274 x[i2] = mdiag[0]*x1 + mdiag[2]*x2; 275 x[i2+1] = mdiag[1]*x1 + mdiag[3]*x2; 276 mdiag += 4; 277 i2 += 2; 278 } 279 ierr = PetscLogFlops(6.0*m);CHKERRQ(ierr); 280 } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) { 281 ierr = PetscMemcpy(x,b,A->rmap->N*sizeof(PetscScalar));CHKERRQ(ierr); 282 } 283 if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){ 284 idiag = a->idiag+4*a->mbs - 4; 285 i2 = 2*m - 2; 286 x1 = x[i2]; x2 = x[i2+1]; 287 x[i2] = idiag[0]*x1 + idiag[2]*x2; 288 x[i2+1] = idiag[1]*x1 + idiag[3]*x2; 289 idiag -= 4; 290 i2 -= 2; 291 for (i=m-2; i>=0; i--) { 292 v = aa + 4*(diag[i]+1); 293 vi = aj + diag[i] + 1; 294 nz = ai[i+1] - diag[i] - 1; 295 s1 = x[i2]; s2 = x[i2+1]; 296 while (nz--) { 297 idx = 2*(*vi++); 298 x1 = x[idx]; x2 = x[1+idx]; 299 s1 -= v[0]*x1 + v[2]*x2; 300 s2 -= v[1]*x1 + v[3]*x2; 301 v += 4; 302 } 303 x[i2] = idiag[0]*s1 + idiag[2]*s2; 304 x[i2+1] = idiag[1]*s1 + idiag[3]*s2; 305 idiag -= 4; 306 i2 -= 2; 307 } 308 ierr = PetscLogFlops(4.0*(a->nz));CHKERRQ(ierr); 309 } 310 } else { 311 SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess"); 312 } 313 ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 314 ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 315 PetscFunctionReturn(0); 316 } 317 318 #undef __FUNCT__ 319 #define __FUNCT__ "MatPBRelax_SeqBAIJ_3" 320 PetscErrorCode MatPBRelax_SeqBAIJ_3(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 321 { 322 Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 323 PetscScalar *x,x1,x2,x3,s1,s2,s3; 324 const MatScalar *v,*aa = a->a, *idiag,*mdiag; 325 const PetscScalar *b; 326 PetscErrorCode ierr; 327 PetscInt m = a->mbs,i,i2,nz,idx; 328 const PetscInt *diag,*ai = a->i,*aj = a->j,*vi; 329 330 PetscFunctionBegin; 331 its = its*lits; 332 if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat"); 333 if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 334 if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift"); 335 if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor"); 336 if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts"); 337 if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations"); 338 339 if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);} 340 341 diag = a->diag; 342 idiag = a->idiag; 343 ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 344 ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 345 346 if (flag & SOR_ZERO_INITIAL_GUESS) { 347 if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){ 348 x[0] = b[0]*idiag[0] + b[1]*idiag[3] + b[2]*idiag[6]; 349 x[1] = b[0]*idiag[1] + b[1]*idiag[4] + b[2]*idiag[7]; 350 x[2] = b[0]*idiag[2] + b[1]*idiag[5] + b[2]*idiag[8]; 351 i2 = 3; 352 idiag += 9; 353 for (i=1; i<m; i++) { 354 v = aa + 9*ai[i]; 355 vi = aj + ai[i]; 356 nz = diag[i] - ai[i]; 357 s1 = b[i2]; s2 = b[i2+1]; s3 = b[i2+2]; 358 while (nz--) { 359 idx = 3*(*vi++); 360 x1 = x[idx]; x2 = x[1+idx];x3 = x[2+idx]; 361 s1 -= v[0]*x1 + v[3]*x2 + v[6]*x3; 362 s2 -= v[1]*x1 + v[4]*x2 + v[7]*x3; 363 s3 -= v[2]*x1 + v[5]*x2 + v[8]*x3; 364 v += 9; 365 } 366 x[i2] = idiag[0]*s1 + idiag[3]*s2 + idiag[6]*s3; 367 x[i2+1] = idiag[1]*s1 + idiag[4]*s2 + idiag[7]*s3; 368 x[i2+2] = idiag[2]*s1 + idiag[5]*s2 + idiag[8]*s3; 369 idiag += 9; 370 i2 += 3; 371 } 372 /* for logging purposes assume number of nonzero in lower half is 1/2 of total */ 373 ierr = PetscLogFlops(9.0*(a->nz));CHKERRQ(ierr); 374 } 375 if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) && 376 (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) { 377 i2 = 0; 378 mdiag = a->idiag+9*a->mbs; 379 for (i=0; i<m; i++) { 380 x1 = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; 381 x[i2] = mdiag[0]*x1 + mdiag[3]*x2 + mdiag[6]*x3; 382 x[i2+1] = mdiag[1]*x1 + mdiag[4]*x2 + mdiag[7]*x3; 383 x[i2+2] = mdiag[2]*x1 + mdiag[5]*x2 + mdiag[8]*x3; 384 mdiag += 9; 385 i2 += 3; 386 } 387 ierr = PetscLogFlops(15.0*m);CHKERRQ(ierr); 388 } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) { 389 ierr = PetscMemcpy(x,b,A->rmap->N*sizeof(PetscScalar));CHKERRQ(ierr); 390 } 391 if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){ 392 idiag = a->idiag+9*a->mbs - 9; 393 i2 = 3*m - 3; 394 x1 = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; 395 x[i2] = idiag[0]*x1 + idiag[3]*x2 + idiag[6]*x3; 396 x[i2+1] = idiag[1]*x1 + idiag[4]*x2 + idiag[7]*x3; 397 x[i2+2] = idiag[2]*x1 + idiag[5]*x2 + idiag[8]*x3; 398 idiag -= 9; 399 i2 -= 3; 400 for (i=m-2; i>=0; i--) { 401 v = aa + 9*(diag[i]+1); 402 vi = aj + diag[i] + 1; 403 nz = ai[i+1] - diag[i] - 1; 404 s1 = x[i2]; s2 = x[i2+1]; s3 = x[i2+2]; 405 while (nz--) { 406 idx = 3*(*vi++); 407 x1 = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; 408 s1 -= v[0]*x1 + v[3]*x2 + v[6]*x3; 409 s2 -= v[1]*x1 + v[4]*x2 + v[7]*x3; 410 s3 -= v[2]*x1 + v[5]*x2 + v[8]*x3; 411 v += 9; 412 } 413 x[i2] = idiag[0]*s1 + idiag[3]*s2 + idiag[6]*s3; 414 x[i2+1] = idiag[1]*s1 + idiag[4]*s2 + idiag[7]*s3; 415 x[i2+2] = idiag[2]*s1 + idiag[5]*s2 + idiag[8]*s3; 416 idiag -= 9; 417 i2 -= 3; 418 } 419 ierr = PetscLogFlops(9.0*(a->nz));CHKERRQ(ierr); 420 } 421 } else { 422 SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess"); 423 } 424 ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 425 ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 426 PetscFunctionReturn(0); 427 } 428 429 #undef __FUNCT__ 430 #define __FUNCT__ "MatPBRelax_SeqBAIJ_4" 431 PetscErrorCode MatPBRelax_SeqBAIJ_4(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 432 { 433 Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 434 PetscScalar *x,x1,x2,x3,x4,s1,s2,s3,s4; 435 const MatScalar *v,*aa = a->a, *idiag,*mdiag; 436 const PetscScalar *b; 437 PetscErrorCode ierr; 438 PetscInt m = a->mbs,i,i2,nz,idx; 439 const PetscInt *diag,*ai = a->i,*aj = a->j,*vi; 440 441 PetscFunctionBegin; 442 if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat"); 443 its = its*lits; 444 if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 445 if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift"); 446 if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor"); 447 if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts"); 448 if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations"); 449 450 if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);} 451 452 diag = a->diag; 453 idiag = a->idiag; 454 ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 455 ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 456 457 if (flag & SOR_ZERO_INITIAL_GUESS) { 458 if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){ 459 x[0] = b[0]*idiag[0] + b[1]*idiag[4] + b[2]*idiag[8] + b[3]*idiag[12]; 460 x[1] = b[0]*idiag[1] + b[1]*idiag[5] + b[2]*idiag[9] + b[3]*idiag[13]; 461 x[2] = b[0]*idiag[2] + b[1]*idiag[6] + b[2]*idiag[10] + b[3]*idiag[14]; 462 x[3] = b[0]*idiag[3] + b[1]*idiag[7] + b[2]*idiag[11] + b[3]*idiag[15]; 463 i2 = 4; 464 idiag += 16; 465 for (i=1; i<m; i++) { 466 v = aa + 16*ai[i]; 467 vi = aj + ai[i]; 468 nz = diag[i] - ai[i]; 469 s1 = b[i2]; s2 = b[i2+1]; s3 = b[i2+2]; s4 = b[i2+3]; 470 while (nz--) { 471 idx = 4*(*vi++); 472 x1 = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; 473 s1 -= v[0]*x1 + v[4]*x2 + v[8]*x3 + v[12]*x4; 474 s2 -= v[1]*x1 + v[5]*x2 + v[9]*x3 + v[13]*x4; 475 s3 -= v[2]*x1 + v[6]*x2 + v[10]*x3 + v[14]*x4; 476 s4 -= v[3]*x1 + v[7]*x2 + v[11]*x3 + v[15]*x4; 477 v += 16; 478 } 479 x[i2] = idiag[0]*s1 + idiag[4]*s2 + idiag[8]*s3 + idiag[12]*s4; 480 x[i2+1] = idiag[1]*s1 + idiag[5]*s2 + idiag[9]*s3 + idiag[13]*s4; 481 x[i2+2] = idiag[2]*s1 + idiag[6]*s2 + idiag[10]*s3 + idiag[14]*s4; 482 x[i2+3] = idiag[3]*s1 + idiag[7]*s2 + idiag[11]*s3 + idiag[15]*s4; 483 idiag += 16; 484 i2 += 4; 485 } 486 /* for logging purposes assume number of nonzero in lower half is 1/2 of total */ 487 ierr = PetscLogFlops(16.0*(a->nz));CHKERRQ(ierr); 488 } 489 if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) && 490 (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) { 491 i2 = 0; 492 mdiag = a->idiag+16*a->mbs; 493 for (i=0; i<m; i++) { 494 x1 = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; 495 x[i2] = mdiag[0]*x1 + mdiag[4]*x2 + mdiag[8]*x3 + mdiag[12]*x4; 496 x[i2+1] = mdiag[1]*x1 + mdiag[5]*x2 + mdiag[9]*x3 + mdiag[13]*x4; 497 x[i2+2] = mdiag[2]*x1 + mdiag[6]*x2 + mdiag[10]*x3 + mdiag[14]*x4; 498 x[i2+3] = mdiag[3]*x1 + mdiag[7]*x2 + mdiag[11]*x3 + mdiag[15]*x4; 499 mdiag += 16; 500 i2 += 4; 501 } 502 ierr = PetscLogFlops(28.0*m);CHKERRQ(ierr); 503 } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) { 504 ierr = PetscMemcpy(x,b,A->rmap->N*sizeof(PetscScalar));CHKERRQ(ierr); 505 } 506 if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){ 507 idiag = a->idiag+16*a->mbs - 16; 508 i2 = 4*m - 4; 509 x1 = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; 510 x[i2] = idiag[0]*x1 + idiag[4]*x2 + idiag[8]*x3 + idiag[12]*x4; 511 x[i2+1] = idiag[1]*x1 + idiag[5]*x2 + idiag[9]*x3 + idiag[13]*x4; 512 x[i2+2] = idiag[2]*x1 + idiag[6]*x2 + idiag[10]*x3 + idiag[14]*x4; 513 x[i2+3] = idiag[3]*x1 + idiag[7]*x2 + idiag[11]*x3 + idiag[15]*x4; 514 idiag -= 16; 515 i2 -= 4; 516 for (i=m-2; i>=0; i--) { 517 v = aa + 16*(diag[i]+1); 518 vi = aj + diag[i] + 1; 519 nz = ai[i+1] - diag[i] - 1; 520 s1 = x[i2]; s2 = x[i2+1]; s3 = x[i2+2]; s4 = x[i2+3]; 521 while (nz--) { 522 idx = 4*(*vi++); 523 x1 = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; 524 s1 -= v[0]*x1 + v[4]*x2 + v[8]*x3 + v[12]*x4; 525 s2 -= v[1]*x1 + v[5]*x2 + v[9]*x3 + v[13]*x4; 526 s3 -= v[2]*x1 + v[6]*x2 + v[10]*x3 + v[14]*x4; 527 s4 -= v[3]*x1 + v[7]*x2 + v[11]*x3 + v[15]*x4; 528 v += 16; 529 } 530 x[i2] = idiag[0]*s1 + idiag[4]*s2 + idiag[8]*s3 + idiag[12]*s4; 531 x[i2+1] = idiag[1]*s1 + idiag[5]*s2 + idiag[9]*s3 + idiag[13]*s4; 532 x[i2+2] = idiag[2]*s1 + idiag[6]*s2 + idiag[10]*s3 + idiag[14]*s4; 533 x[i2+3] = idiag[3]*s1 + idiag[7]*s2 + idiag[11]*s3 + idiag[15]*s4; 534 idiag -= 16; 535 i2 -= 4; 536 } 537 ierr = PetscLogFlops(16.0*(a->nz));CHKERRQ(ierr); 538 } 539 } else { 540 SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess"); 541 } 542 ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 543 ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 544 PetscFunctionReturn(0); 545 } 546 547 #undef __FUNCT__ 548 #define __FUNCT__ "MatPBRelax_SeqBAIJ_5" 549 PetscErrorCode MatPBRelax_SeqBAIJ_5(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 550 { 551 Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 552 PetscScalar *x,x1,x2,x3,x4,x5,s1,s2,s3,s4,s5; 553 const MatScalar *v,*aa = a->a, *idiag,*mdiag; 554 const PetscScalar *b; 555 PetscErrorCode ierr; 556 PetscInt m = a->mbs,i,i2,nz,idx; 557 const PetscInt *diag,*ai = a->i,*aj = a->j,*vi; 558 559 PetscFunctionBegin; 560 if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat"); 561 its = its*lits; 562 if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 563 if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift"); 564 if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor"); 565 if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts"); 566 if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations"); 567 568 if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);} 569 570 diag = a->diag; 571 idiag = a->idiag; 572 ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 573 ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 574 575 if (flag & SOR_ZERO_INITIAL_GUESS) { 576 if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){ 577 x[0] = b[0]*idiag[0] + b[1]*idiag[5] + b[2]*idiag[10] + b[3]*idiag[15] + b[4]*idiag[20]; 578 x[1] = b[0]*idiag[1] + b[1]*idiag[6] + b[2]*idiag[11] + b[3]*idiag[16] + b[4]*idiag[21]; 579 x[2] = b[0]*idiag[2] + b[1]*idiag[7] + b[2]*idiag[12] + b[3]*idiag[17] + b[4]*idiag[22]; 580 x[3] = b[0]*idiag[3] + b[1]*idiag[8] + b[2]*idiag[13] + b[3]*idiag[18] + b[4]*idiag[23]; 581 x[4] = b[0]*idiag[4] + b[1]*idiag[9] + b[2]*idiag[14] + b[3]*idiag[19] + b[4]*idiag[24]; 582 i2 = 5; 583 idiag += 25; 584 for (i=1; i<m; i++) { 585 v = aa + 25*ai[i]; 586 vi = aj + ai[i]; 587 nz = diag[i] - ai[i]; 588 s1 = b[i2]; s2 = b[i2+1]; s3 = b[i2+2]; s4 = b[i2+3]; s5 = b[i2+4]; 589 while (nz--) { 590 idx = 5*(*vi++); 591 x1 = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx]; 592 s1 -= v[0]*x1 + v[5]*x2 + v[10]*x3 + v[15]*x4 + v[20]*x5; 593 s2 -= v[1]*x1 + v[6]*x2 + v[11]*x3 + v[16]*x4 + v[21]*x5; 594 s3 -= v[2]*x1 + v[7]*x2 + v[12]*x3 + v[17]*x4 + v[22]*x5; 595 s4 -= v[3]*x1 + v[8]*x2 + v[13]*x3 + v[18]*x4 + v[23]*x5; 596 s5 -= v[4]*x1 + v[9]*x2 + v[14]*x3 + v[19]*x4 + v[24]*x5; 597 v += 25; 598 } 599 x[i2] = idiag[0]*s1 + idiag[5]*s2 + idiag[10]*s3 + idiag[15]*s4 + idiag[20]*s5; 600 x[i2+1] = idiag[1]*s1 + idiag[6]*s2 + idiag[11]*s3 + idiag[16]*s4 + idiag[21]*s5; 601 x[i2+2] = idiag[2]*s1 + idiag[7]*s2 + idiag[12]*s3 + idiag[17]*s4 + idiag[22]*s5; 602 x[i2+3] = idiag[3]*s1 + idiag[8]*s2 + idiag[13]*s3 + idiag[18]*s4 + idiag[23]*s5; 603 x[i2+4] = idiag[4]*s1 + idiag[9]*s2 + idiag[14]*s3 + idiag[19]*s4 + idiag[24]*s5; 604 idiag += 25; 605 i2 += 5; 606 } 607 /* for logging purposes assume number of nonzero in lower half is 1/2 of total */ 608 ierr = PetscLogFlops(25.0*(a->nz));CHKERRQ(ierr); 609 } 610 if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) && 611 (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) { 612 i2 = 0; 613 mdiag = a->idiag+25*a->mbs; 614 for (i=0; i<m; i++) { 615 x1 = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4]; 616 x[i2] = mdiag[0]*x1 + mdiag[5]*x2 + mdiag[10]*x3 + mdiag[15]*x4 + mdiag[20]*x5; 617 x[i2+1] = mdiag[1]*x1 + mdiag[6]*x2 + mdiag[11]*x3 + mdiag[16]*x4 + mdiag[21]*x5; 618 x[i2+2] = mdiag[2]*x1 + mdiag[7]*x2 + mdiag[12]*x3 + mdiag[17]*x4 + mdiag[22]*x5; 619 x[i2+3] = mdiag[3]*x1 + mdiag[8]*x2 + mdiag[13]*x3 + mdiag[18]*x4 + mdiag[23]*x5; 620 x[i2+4] = mdiag[4]*x1 + mdiag[9]*x2 + mdiag[14]*x3 + mdiag[19]*x4 + mdiag[24]*x5; 621 mdiag += 25; 622 i2 += 5; 623 } 624 ierr = PetscLogFlops(45.0*m);CHKERRQ(ierr); 625 } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) { 626 ierr = PetscMemcpy(x,b,A->rmap->N*sizeof(PetscScalar));CHKERRQ(ierr); 627 } 628 if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){ 629 idiag = a->idiag+25*a->mbs - 25; 630 i2 = 5*m - 5; 631 x1 = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4]; 632 x[i2] = idiag[0]*x1 + idiag[5]*x2 + idiag[10]*x3 + idiag[15]*x4 + idiag[20]*x5; 633 x[i2+1] = idiag[1]*x1 + idiag[6]*x2 + idiag[11]*x3 + idiag[16]*x4 + idiag[21]*x5; 634 x[i2+2] = idiag[2]*x1 + idiag[7]*x2 + idiag[12]*x3 + idiag[17]*x4 + idiag[22]*x5; 635 x[i2+3] = idiag[3]*x1 + idiag[8]*x2 + idiag[13]*x3 + idiag[18]*x4 + idiag[23]*x5; 636 x[i2+4] = idiag[4]*x1 + idiag[9]*x2 + idiag[14]*x3 + idiag[19]*x4 + idiag[24]*x5; 637 idiag -= 25; 638 i2 -= 5; 639 for (i=m-2; i>=0; i--) { 640 v = aa + 25*(diag[i]+1); 641 vi = aj + diag[i] + 1; 642 nz = ai[i+1] - diag[i] - 1; 643 s1 = x[i2]; s2 = x[i2+1]; s3 = x[i2+2]; s4 = x[i2+3]; s5 = x[i2+4]; 644 while (nz--) { 645 idx = 5*(*vi++); 646 x1 = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx]; 647 s1 -= v[0]*x1 + v[5]*x2 + v[10]*x3 + v[15]*x4 + v[20]*x5; 648 s2 -= v[1]*x1 + v[6]*x2 + v[11]*x3 + v[16]*x4 + v[21]*x5; 649 s3 -= v[2]*x1 + v[7]*x2 + v[12]*x3 + v[17]*x4 + v[22]*x5; 650 s4 -= v[3]*x1 + v[8]*x2 + v[13]*x3 + v[18]*x4 + v[23]*x5; 651 s5 -= v[4]*x1 + v[9]*x2 + v[14]*x3 + v[19]*x4 + v[24]*x5; 652 v += 25; 653 } 654 x[i2] = idiag[0]*s1 + idiag[5]*s2 + idiag[10]*s3 + idiag[15]*s4 + idiag[20]*s5; 655 x[i2+1] = idiag[1]*s1 + idiag[6]*s2 + idiag[11]*s3 + idiag[16]*s4 + idiag[21]*s5; 656 x[i2+2] = idiag[2]*s1 + idiag[7]*s2 + idiag[12]*s3 + idiag[17]*s4 + idiag[22]*s5; 657 x[i2+3] = idiag[3]*s1 + idiag[8]*s2 + idiag[13]*s3 + idiag[18]*s4 + idiag[23]*s5; 658 x[i2+4] = idiag[4]*s1 + idiag[9]*s2 + idiag[14]*s3 + idiag[19]*s4 + idiag[24]*s5; 659 idiag -= 25; 660 i2 -= 5; 661 } 662 ierr = PetscLogFlops(25.0*(a->nz));CHKERRQ(ierr); 663 } 664 } else { 665 SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess"); 666 } 667 ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 668 ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 669 PetscFunctionReturn(0); 670 } 671 672 #undef __FUNCT__ 673 #define __FUNCT__ "MatPBRelax_SeqBAIJ_6" 674 PetscErrorCode MatPBRelax_SeqBAIJ_6(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 675 { 676 Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 677 PetscScalar *x,x1,x2,x3,x4,x5,x6,s1,s2,s3,s4,s5,s6; 678 const MatScalar *v,*aa = a->a, *idiag,*mdiag; 679 const PetscScalar *b; 680 PetscErrorCode ierr; 681 PetscInt m = a->mbs,i,i2,nz,idx; 682 const PetscInt *diag,*ai = a->i,*aj = a->j,*vi; 683 684 PetscFunctionBegin; 685 if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat"); 686 its = its*lits; 687 if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 688 if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift"); 689 if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor"); 690 if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts"); 691 if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations"); 692 693 if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);} 694 695 diag = a->diag; 696 idiag = a->idiag; 697 ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 698 ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 699 700 if (flag & SOR_ZERO_INITIAL_GUESS) { 701 if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){ 702 x[0] = b[0]*idiag[0] + b[1]*idiag[6] + b[2]*idiag[12] + b[3]*idiag[18] + b[4]*idiag[24] + b[5]*idiag[30]; 703 x[1] = b[0]*idiag[1] + b[1]*idiag[7] + b[2]*idiag[13] + b[3]*idiag[19] + b[4]*idiag[25] + b[5]*idiag[31]; 704 x[2] = b[0]*idiag[2] + b[1]*idiag[8] + b[2]*idiag[14] + b[3]*idiag[20] + b[4]*idiag[26] + b[5]*idiag[32]; 705 x[3] = b[0]*idiag[3] + b[1]*idiag[9] + b[2]*idiag[15] + b[3]*idiag[21] + b[4]*idiag[27] + b[5]*idiag[33]; 706 x[4] = b[0]*idiag[4] + b[1]*idiag[10] + b[2]*idiag[16] + b[3]*idiag[22] + b[4]*idiag[28] + b[5]*idiag[34]; 707 x[5] = b[0]*idiag[5] + b[1]*idiag[11] + b[2]*idiag[17] + b[3]*idiag[23] + b[4]*idiag[29] + b[5]*idiag[35]; 708 i2 = 6; 709 idiag += 36; 710 for (i=1; i<m; i++) { 711 v = aa + 36*ai[i]; 712 vi = aj + ai[i]; 713 nz = diag[i] - ai[i]; 714 s1 = b[i2]; s2 = b[i2+1]; s3 = b[i2+2]; s4 = b[i2+3]; s5 = b[i2+4]; s6 = b[i2+5]; 715 while (nz--) { 716 idx = 6*(*vi++); 717 x1 = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx]; x6 = x[5+idx]; 718 s1 -= v[0]*x1 + v[6]*x2 + v[12]*x3 + v[18]*x4 + v[24]*x5 + v[30]*x6; 719 s2 -= v[1]*x1 + v[7]*x2 + v[13]*x3 + v[19]*x4 + v[25]*x5 + v[31]*x6; 720 s3 -= v[2]*x1 + v[8]*x2 + v[14]*x3 + v[20]*x4 + v[26]*x5 + v[32]*x6; 721 s4 -= v[3]*x1 + v[9]*x2 + v[15]*x3 + v[21]*x4 + v[27]*x5 + v[33]*x6; 722 s5 -= v[4]*x1 + v[10]*x2 + v[16]*x3 + v[22]*x4 + v[28]*x5 + v[34]*x6; 723 s6 -= v[5]*x1 + v[11]*x2 + v[17]*x3 + v[23]*x4 + v[29]*x5 + v[35]*x6; 724 v += 36; 725 } 726 x[i2] = idiag[0]*s1 + idiag[6]*s2 + idiag[12]*s3 + idiag[18]*s4 + idiag[24]*s5 + idiag[30]*s6; 727 x[i2+1] = idiag[1]*s1 + idiag[7]*s2 + idiag[13]*s3 + idiag[19]*s4 + idiag[25]*s5 + idiag[31]*s6; 728 x[i2+2] = idiag[2]*s1 + idiag[8]*s2 + idiag[14]*s3 + idiag[20]*s4 + idiag[26]*s5 + idiag[32]*s6; 729 x[i2+3] = idiag[3]*s1 + idiag[9]*s2 + idiag[15]*s3 + idiag[21]*s4 + idiag[27]*s5 + idiag[33]*s6; 730 x[i2+4] = idiag[4]*s1 + idiag[10]*s2 + idiag[16]*s3 + idiag[22]*s4 + idiag[28]*s5 + idiag[34]*s6; 731 x[i2+5] = idiag[5]*s1 + idiag[11]*s2 + idiag[17]*s3 + idiag[23]*s4 + idiag[29]*s5 + idiag[35]*s6; 732 idiag += 36; 733 i2 += 6; 734 } 735 /* for logging purposes assume number of nonzero in lower half is 1/2 of total */ 736 ierr = PetscLogFlops(36.0*(a->nz));CHKERRQ(ierr); 737 } 738 if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) && 739 (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) { 740 i2 = 0; 741 mdiag = a->idiag+36*a->mbs; 742 for (i=0; i<m; i++) { 743 x1 = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4]; x6 = x[i2+5]; 744 x[i2] = mdiag[0]*x1 + mdiag[6]*x2 + mdiag[12]*x3 + mdiag[18]*x4 + mdiag[24]*x5 + mdiag[30]*x6; 745 x[i2+1] = mdiag[1]*x1 + mdiag[7]*x2 + mdiag[13]*x3 + mdiag[19]*x4 + mdiag[25]*x5 + mdiag[31]*x6; 746 x[i2+2] = mdiag[2]*x1 + mdiag[8]*x2 + mdiag[14]*x3 + mdiag[20]*x4 + mdiag[26]*x5 + mdiag[32]*x6; 747 x[i2+3] = mdiag[3]*x1 + mdiag[9]*x2 + mdiag[15]*x3 + mdiag[21]*x4 + mdiag[27]*x5 + mdiag[33]*x6; 748 x[i2+4] = mdiag[4]*x1 + mdiag[10]*x2 + mdiag[16]*x3 + mdiag[22]*x4 + mdiag[28]*x5 + mdiag[34]*x6; 749 x[i2+5] = mdiag[5]*x1 + mdiag[11]*x2 + mdiag[17]*x3 + mdiag[23]*x4 + mdiag[29]*x5 + mdiag[35]*x6; 750 mdiag += 36; 751 i2 += 6; 752 } 753 ierr = PetscLogFlops(60.0*m);CHKERRQ(ierr); 754 } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) { 755 ierr = PetscMemcpy(x,b,A->rmap->N*sizeof(PetscScalar));CHKERRQ(ierr); 756 } 757 if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){ 758 idiag = a->idiag+36*a->mbs - 36; 759 i2 = 6*m - 6; 760 x1 = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4]; x6 = x[i2+5]; 761 x[i2] = idiag[0]*x1 + idiag[6]*x2 + idiag[12]*x3 + idiag[18]*x4 + idiag[24]*x5 + idiag[30]*x6; 762 x[i2+1] = idiag[1]*x1 + idiag[7]*x2 + idiag[13]*x3 + idiag[19]*x4 + idiag[25]*x5 + idiag[31]*x6; 763 x[i2+2] = idiag[2]*x1 + idiag[8]*x2 + idiag[14]*x3 + idiag[20]*x4 + idiag[26]*x5 + idiag[32]*x6; 764 x[i2+3] = idiag[3]*x1 + idiag[9]*x2 + idiag[15]*x3 + idiag[21]*x4 + idiag[27]*x5 + idiag[33]*x6; 765 x[i2+4] = idiag[4]*x1 + idiag[10]*x2 + idiag[16]*x3 + idiag[22]*x4 + idiag[28]*x5 + idiag[34]*x6; 766 x[i2+5] = idiag[5]*x1 + idiag[11]*x2 + idiag[17]*x3 + idiag[23]*x4 + idiag[29]*x5 + idiag[35]*x6; 767 idiag -= 36; 768 i2 -= 6; 769 for (i=m-2; i>=0; i--) { 770 v = aa + 36*(diag[i]+1); 771 vi = aj + diag[i] + 1; 772 nz = ai[i+1] - diag[i] - 1; 773 s1 = x[i2]; s2 = x[i2+1]; s3 = x[i2+2]; s4 = x[i2+3]; s5 = x[i2+4]; s6 = x[i2+5]; 774 while (nz--) { 775 idx = 6*(*vi++); 776 x1 = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx]; x6 = x[5+idx]; 777 s1 -= v[0]*x1 + v[6]*x2 + v[12]*x3 + v[18]*x4 + v[24]*x5 + v[30]*x6; 778 s2 -= v[1]*x1 + v[7]*x2 + v[13]*x3 + v[19]*x4 + v[25]*x5 + v[31]*x6; 779 s3 -= v[2]*x1 + v[8]*x2 + v[14]*x3 + v[20]*x4 + v[26]*x5 + v[32]*x6; 780 s4 -= v[3]*x1 + v[9]*x2 + v[15]*x3 + v[21]*x4 + v[27]*x5 + v[33]*x6; 781 s5 -= v[4]*x1 + v[10]*x2 + v[16]*x3 + v[22]*x4 + v[28]*x5 + v[34]*x6; 782 s6 -= v[5]*x1 + v[11]*x2 + v[17]*x3 + v[23]*x4 + v[29]*x5 + v[35]*x6; 783 v += 36; 784 } 785 x[i2] = idiag[0]*s1 + idiag[6]*s2 + idiag[12]*s3 + idiag[18]*s4 + idiag[24]*s5 + idiag[30]*s6; 786 x[i2+1] = idiag[1]*s1 + idiag[7]*s2 + idiag[13]*s3 + idiag[19]*s4 + idiag[25]*s5 + idiag[31]*s6; 787 x[i2+2] = idiag[2]*s1 + idiag[8]*s2 + idiag[14]*s3 + idiag[20]*s4 + idiag[26]*s5 + idiag[32]*s6; 788 x[i2+3] = idiag[3]*s1 + idiag[9]*s2 + idiag[15]*s3 + idiag[21]*s4 + idiag[27]*s5 + idiag[33]*s6; 789 x[i2+4] = idiag[4]*s1 + idiag[10]*s2 + idiag[16]*s3 + idiag[22]*s4 + idiag[28]*s5 + idiag[34]*s6; 790 x[i2+5] = idiag[5]*s1 + idiag[11]*s2 + idiag[17]*s3 + idiag[23]*s4 + idiag[29]*s5 + idiag[35]*s6; 791 idiag -= 36; 792 i2 -= 6; 793 } 794 ierr = PetscLogFlops(36.0*(a->nz));CHKERRQ(ierr); 795 } 796 } else { 797 SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess"); 798 } 799 ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 800 ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 801 PetscFunctionReturn(0); 802 } 803 804 #undef __FUNCT__ 805 #define __FUNCT__ "MatPBRelax_SeqBAIJ_7" 806 PetscErrorCode MatPBRelax_SeqBAIJ_7(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 807 { 808 Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 809 PetscScalar *x,x1,x2,x3,x4,x5,x6,x7,s1,s2,s3,s4,s5,s6,s7; 810 const MatScalar *v,*aa = a->a, *idiag,*mdiag; 811 const PetscScalar *b; 812 PetscErrorCode ierr; 813 PetscInt m = a->mbs,i,i2,nz,idx; 814 const PetscInt *diag,*ai = a->i,*aj = a->j,*vi; 815 816 PetscFunctionBegin; 817 if (flag & SOR_EISENSTAT) SETERRQ(PETSC_ERR_SUP,"No support yet for Eisenstat"); 818 its = its*lits; 819 if (its <= 0) SETERRQ2(PETSC_ERR_ARG_WRONG,"Relaxation requires global its %D and local its %D both positive",its,lits); 820 if (fshift) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for diagonal shift"); 821 if (omega != 1.0) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for non-trivial relaxation factor"); 822 if ((flag & SOR_APPLY_UPPER) || (flag & SOR_APPLY_LOWER)) SETERRQ(PETSC_ERR_SUP,"Sorry, no support for applying upper or lower triangular parts"); 823 if (its > 1) SETERRQ(PETSC_ERR_SUP,"Sorry, no support yet for multiple point block SOR iterations"); 824 825 if (!a->idiagvalid){ierr = MatInvertBlockDiagonal_SeqBAIJ(A);CHKERRQ(ierr);} 826 827 diag = a->diag; 828 idiag = a->idiag; 829 ierr = VecGetArray(xx,&x);CHKERRQ(ierr); 830 ierr = VecGetArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 831 832 if (flag & SOR_ZERO_INITIAL_GUESS) { 833 if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP){ 834 x[0] = b[0]*idiag[0] + b[1]*idiag[7] + b[2]*idiag[14] + b[3]*idiag[21] + b[4]*idiag[28] + b[5]*idiag[35] + b[6]*idiag[42]; 835 x[1] = b[0]*idiag[1] + b[1]*idiag[8] + b[2]*idiag[15] + b[3]*idiag[22] + b[4]*idiag[29] + b[5]*idiag[36] + b[6]*idiag[43]; 836 x[2] = b[0]*idiag[2] + b[1]*idiag[9] + b[2]*idiag[16] + b[3]*idiag[23] + b[4]*idiag[30] + b[5]*idiag[37] + b[6]*idiag[44]; 837 x[3] = b[0]*idiag[3] + b[1]*idiag[10] + b[2]*idiag[17] + b[3]*idiag[24] + b[4]*idiag[31] + b[5]*idiag[38] + b[6]*idiag[45]; 838 x[4] = b[0]*idiag[4] + b[1]*idiag[11] + b[2]*idiag[18] + b[3]*idiag[25] + b[4]*idiag[32] + b[5]*idiag[39] + b[6]*idiag[46]; 839 x[5] = b[0]*idiag[5] + b[1]*idiag[12] + b[2]*idiag[19] + b[3]*idiag[26] + b[4]*idiag[33] + b[5]*idiag[40] + b[6]*idiag[47]; 840 x[6] = b[0]*idiag[6] + b[1]*idiag[13] + b[2]*idiag[20] + b[3]*idiag[27] + b[4]*idiag[34] + b[5]*idiag[41] + b[6]*idiag[48]; 841 i2 = 7; 842 idiag += 49; 843 for (i=1; i<m; i++) { 844 v = aa + 49*ai[i]; 845 vi = aj + ai[i]; 846 nz = diag[i] - ai[i]; 847 s1 = b[i2]; s2 = b[i2+1]; s3 = b[i2+2]; s4 = b[i2+3]; s5 = b[i2+4]; s6 = b[i2+5]; s7 = b[i2+6]; 848 while (nz--) { 849 idx = 7*(*vi++); 850 x1 = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx]; x6 = x[5+idx]; x7 = x[6+idx]; 851 s1 -= v[0]*x1 + v[7]*x2 + v[14]*x3 + v[21]*x4 + v[28]*x5 + v[35]*x6 + v[42]*x7; 852 s2 -= v[1]*x1 + v[8]*x2 + v[15]*x3 + v[22]*x4 + v[29]*x5 + v[36]*x6 + v[43]*x7; 853 s3 -= v[2]*x1 + v[9]*x2 + v[16]*x3 + v[23]*x4 + v[30]*x5 + v[37]*x6 + v[44]*x7; 854 s4 -= v[3]*x1 + v[10]*x2 + v[17]*x3 + v[24]*x4 + v[31]*x5 + v[38]*x6 + v[45]*x7; 855 s5 -= v[4]*x1 + v[11]*x2 + v[18]*x3 + v[25]*x4 + v[32]*x5 + v[39]*x6 + v[46]*x7; 856 s6 -= v[5]*x1 + v[12]*x2 + v[19]*x3 + v[26]*x4 + v[33]*x5 + v[40]*x6 + v[47]*x7; 857 s7 -= v[6]*x1 + v[13]*x2 + v[20]*x3 + v[27]*x4 + v[34]*x5 + v[41]*x6 + v[48]*x7; 858 v += 49; 859 } 860 x[i2] = idiag[0]*s1 + idiag[7]*s2 + idiag[14]*s3 + idiag[21]*s4 + idiag[28]*s5 + idiag[35]*s6 + idiag[42]*s7; 861 x[i2+1] = idiag[1]*s1 + idiag[8]*s2 + idiag[15]*s3 + idiag[22]*s4 + idiag[29]*s5 + idiag[36]*s6 + idiag[43]*s7; 862 x[i2+2] = idiag[2]*s1 + idiag[9]*s2 + idiag[16]*s3 + idiag[23]*s4 + idiag[30]*s5 + idiag[37]*s6 + idiag[44]*s7; 863 x[i2+3] = idiag[3]*s1 + idiag[10]*s2 + idiag[17]*s3 + idiag[24]*s4 + idiag[31]*s5 + idiag[38]*s6 + idiag[45]*s7; 864 x[i2+4] = idiag[4]*s1 + idiag[11]*s2 + idiag[18]*s3 + idiag[25]*s4 + idiag[32]*s5 + idiag[39]*s6 + idiag[46]*s7; 865 x[i2+5] = idiag[5]*s1 + idiag[12]*s2 + idiag[19]*s3 + idiag[26]*s4 + idiag[33]*s5 + idiag[40]*s6 + idiag[47]*s7; 866 x[i2+6] = idiag[6]*s1 + idiag[13]*s2 + idiag[20]*s3 + idiag[27]*s4 + idiag[34]*s5 + idiag[41]*s6 + idiag[48]*s7; 867 idiag += 49; 868 i2 += 7; 869 } 870 /* for logging purposes assume number of nonzero in lower half is 1/2 of total */ 871 ierr = PetscLogFlops(49.0*(a->nz));CHKERRQ(ierr); 872 } 873 if ((flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) && 874 (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP)) { 875 i2 = 0; 876 mdiag = a->idiag+49*a->mbs; 877 for (i=0; i<m; i++) { 878 x1 = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4]; x6 = x[i2+5]; x7 = x[i2+6]; 879 x[i2] = mdiag[0]*x1 + mdiag[7]*x2 + mdiag[14]*x3 + mdiag[21]*x4 + mdiag[28]*x5 + mdiag[35]*x6 + mdiag[35]*x7; 880 x[i2+1] = mdiag[1]*x1 + mdiag[8]*x2 + mdiag[15]*x3 + mdiag[22]*x4 + mdiag[29]*x5 + mdiag[36]*x6 + mdiag[36]*x7; 881 x[i2+2] = mdiag[2]*x1 + mdiag[9]*x2 + mdiag[16]*x3 + mdiag[23]*x4 + mdiag[30]*x5 + mdiag[37]*x6 + mdiag[37]*x7; 882 x[i2+3] = mdiag[3]*x1 + mdiag[10]*x2 + mdiag[17]*x3 + mdiag[24]*x4 + mdiag[31]*x5 + mdiag[38]*x6 + mdiag[38]*x7; 883 x[i2+4] = mdiag[4]*x1 + mdiag[11]*x2 + mdiag[18]*x3 + mdiag[25]*x4 + mdiag[32]*x5 + mdiag[39]*x6 + mdiag[39]*x7; 884 x[i2+5] = mdiag[5]*x1 + mdiag[12]*x2 + mdiag[19]*x3 + mdiag[26]*x4 + mdiag[33]*x5 + mdiag[40]*x6 + mdiag[40]*x7; 885 x[i2+6] = mdiag[6]*x1 + mdiag[13]*x2 + mdiag[20]*x3 + mdiag[27]*x4 + mdiag[34]*x5 + mdiag[41]*x6 + mdiag[41]*x7; 886 mdiag += 36; 887 i2 += 6; 888 } 889 ierr = PetscLogFlops(93.0*m);CHKERRQ(ierr); 890 } else if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) { 891 ierr = PetscMemcpy(x,b,A->rmap->N*sizeof(PetscScalar));CHKERRQ(ierr); 892 } 893 if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP){ 894 idiag = a->idiag+49*a->mbs - 49; 895 i2 = 7*m - 7; 896 x1 = x[i2]; x2 = x[i2+1]; x3 = x[i2+2]; x4 = x[i2+3]; x5 = x[i2+4]; x6 = x[i2+5]; x7 = x[i2+6]; 897 x[i2] = idiag[0]*x1 + idiag[7]*x2 + idiag[14]*x3 + idiag[21]*x4 + idiag[28]*x5 + idiag[35]*x6 + idiag[42]*x7; 898 x[i2+1] = idiag[1]*x1 + idiag[8]*x2 + idiag[15]*x3 + idiag[22]*x4 + idiag[29]*x5 + idiag[36]*x6 + idiag[43]*x7; 899 x[i2+2] = idiag[2]*x1 + idiag[9]*x2 + idiag[16]*x3 + idiag[23]*x4 + idiag[30]*x5 + idiag[37]*x6 + idiag[44]*x7; 900 x[i2+3] = idiag[3]*x1 + idiag[10]*x2 + idiag[17]*x3 + idiag[24]*x4 + idiag[31]*x5 + idiag[38]*x6 + idiag[45]*x7; 901 x[i2+4] = idiag[4]*x1 + idiag[11]*x2 + idiag[18]*x3 + idiag[25]*x4 + idiag[32]*x5 + idiag[39]*x6 + idiag[46]*x7; 902 x[i2+5] = idiag[5]*x1 + idiag[12]*x2 + idiag[19]*x3 + idiag[26]*x4 + idiag[33]*x5 + idiag[40]*x6 + idiag[47]*x7; 903 x[i2+6] = idiag[6]*x1 + idiag[13]*x2 + idiag[20]*x3 + idiag[27]*x4 + idiag[34]*x5 + idiag[41]*x6 + idiag[48]*x7; 904 idiag -= 49; 905 i2 -= 7; 906 for (i=m-2; i>=0; i--) { 907 v = aa + 49*(diag[i]+1); 908 vi = aj + diag[i] + 1; 909 nz = ai[i+1] - diag[i] - 1; 910 s1 = x[i2]; s2 = x[i2+1]; s3 = x[i2+2]; s4 = x[i2+3]; s5 = x[i2+4]; s6 = x[i2+5]; s7 = x[i2+6]; 911 while (nz--) { 912 idx = 7*(*vi++); 913 x1 = x[idx]; x2 = x[1+idx]; x3 = x[2+idx]; x4 = x[3+idx]; x5 = x[4+idx]; x6 = x[5+idx]; x7 = x[6+idx]; 914 s1 -= v[0]*x1 + v[7]*x2 + v[14]*x3 + v[21]*x4 + v[28]*x5 + v[35]*x6 + v[42]*x7; 915 s2 -= v[1]*x1 + v[8]*x2 + v[15]*x3 + v[22]*x4 + v[29]*x5 + v[36]*x6 + v[43]*x7; 916 s3 -= v[2]*x1 + v[9]*x2 + v[16]*x3 + v[23]*x4 + v[30]*x5 + v[37]*x6 + v[44]*x7; 917 s4 -= v[3]*x1 + v[10]*x2 + v[17]*x3 + v[24]*x4 + v[31]*x5 + v[38]*x6 + v[45]*x7; 918 s5 -= v[4]*x1 + v[11]*x2 + v[18]*x3 + v[25]*x4 + v[32]*x5 + v[39]*x6 + v[46]*x7; 919 s6 -= v[5]*x1 + v[12]*x2 + v[19]*x3 + v[26]*x4 + v[33]*x5 + v[40]*x6 + v[47]*x7; 920 s7 -= v[6]*x1 + v[13]*x2 + v[20]*x3 + v[27]*x4 + v[34]*x5 + v[41]*x6 + v[48]*x7; 921 v += 49; 922 } 923 x[i2] = idiag[0]*s1 + idiag[7]*s2 + idiag[14]*s3 + idiag[21]*s4 + idiag[28]*s5 + idiag[35]*s6 + idiag[42]*s7; 924 x[i2+1] = idiag[1]*s1 + idiag[8]*s2 + idiag[15]*s3 + idiag[22]*s4 + idiag[29]*s5 + idiag[36]*s6 + idiag[43]*s7; 925 x[i2+2] = idiag[2]*s1 + idiag[9]*s2 + idiag[16]*s3 + idiag[23]*s4 + idiag[30]*s5 + idiag[37]*s6 + idiag[44]*s7; 926 x[i2+3] = idiag[3]*s1 + idiag[10]*s2 + idiag[17]*s3 + idiag[24]*s4 + idiag[31]*s5 + idiag[38]*s6 + idiag[45]*s7; 927 x[i2+4] = idiag[4]*s1 + idiag[11]*s2 + idiag[18]*s3 + idiag[25]*s4 + idiag[32]*s5 + idiag[39]*s6 + idiag[46]*s7; 928 x[i2+5] = idiag[5]*s1 + idiag[12]*s2 + idiag[19]*s3 + idiag[26]*s4 + idiag[33]*s5 + idiag[40]*s6 + idiag[47]*s7; 929 x[i2+6] = idiag[6]*s1 + idiag[13]*s2 + idiag[20]*s3 + idiag[27]*s4 + idiag[34]*s5 + idiag[41]*s6 + idiag[48]*s7; 930 idiag -= 49; 931 i2 -= 7; 932 } 933 ierr = PetscLogFlops(49.0*(a->nz));CHKERRQ(ierr); 934 } 935 } else { 936 SETERRQ(PETSC_ERR_SUP,"Only supports point block SOR with zero initial guess"); 937 } 938 ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); 939 ierr = VecRestoreArray(bb,(PetscScalar**)&b);CHKERRQ(ierr); 940 PetscFunctionReturn(0); 941 } 942 943 /* 944 Special version for direct calls from Fortran (Used in PETSc-fun3d) 945 */ 946 #if defined(PETSC_HAVE_FORTRAN_CAPS) 947 #define matsetvaluesblocked4_ MATSETVALUESBLOCKED4 948 #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 949 #define matsetvaluesblocked4_ matsetvaluesblocked4 950 #endif 951 952 EXTERN_C_BEGIN 953 #undef __FUNCT__ 954 #define __FUNCT__ "matsetvaluesblocked4_" 955 void PETSCMAT_DLLEXPORT matsetvaluesblocked4_(Mat *AA,PetscInt *mm,const PetscInt im[],PetscInt *nn,const PetscInt in[],const PetscScalar v[]) 956 { 957 Mat A = *AA; 958 Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 959 PetscInt *rp,k,low,high,t,ii,jj,row,nrow,i,col,l,N,m = *mm,n = *nn; 960 PetscInt *ai=a->i,*ailen=a->ilen; 961 PetscInt *aj=a->j,stepval,lastcol = -1; 962 const PetscScalar *value = v; 963 MatScalar *ap,*aa = a->a,*bap; 964 965 PetscFunctionBegin; 966 if (A->rmap->bs != 4) SETERRABORT(((PetscObject)A)->comm,PETSC_ERR_ARG_WRONG,"Can only be called with a block size of 4"); 967 stepval = (n-1)*4; 968 for (k=0; k<m; k++) { /* loop over added rows */ 969 row = im[k]; 970 rp = aj + ai[row]; 971 ap = aa + 16*ai[row]; 972 nrow = ailen[row]; 973 low = 0; 974 high = nrow; 975 for (l=0; l<n; l++) { /* loop over added columns */ 976 col = in[l]; 977 if (col <= lastcol) low = 0; else high = nrow; 978 lastcol = col; 979 value = v + k*(stepval+4 + l)*4; 980 while (high-low > 7) { 981 t = (low+high)/2; 982 if (rp[t] > col) high = t; 983 else low = t; 984 } 985 for (i=low; i<high; i++) { 986 if (rp[i] > col) break; 987 if (rp[i] == col) { 988 bap = ap + 16*i; 989 for (ii=0; ii<4; ii++,value+=stepval) { 990 for (jj=ii; jj<16; jj+=4) { 991 bap[jj] += *value++; 992 } 993 } 994 goto noinsert2; 995 } 996 } 997 N = nrow++ - 1; 998 high++; /* added new column index thus must search to one higher than before */ 999 /* shift up all the later entries in this row */ 1000 for (ii=N; ii>=i; ii--) { 1001 rp[ii+1] = rp[ii]; 1002 PetscMemcpy(ap+16*(ii+1),ap+16*(ii),16*sizeof(MatScalar)); 1003 } 1004 if (N >= i) { 1005 PetscMemzero(ap+16*i,16*sizeof(MatScalar)); 1006 } 1007 rp[i] = col; 1008 bap = ap + 16*i; 1009 for (ii=0; ii<4; ii++,value+=stepval) { 1010 for (jj=ii; jj<16; jj+=4) { 1011 bap[jj] = *value++; 1012 } 1013 } 1014 noinsert2:; 1015 low = i; 1016 } 1017 ailen[row] = nrow; 1018 } 1019 PetscFunctionReturnVoid(); 1020 } 1021 EXTERN_C_END 1022 1023 #if defined(PETSC_HAVE_FORTRAN_CAPS) 1024 #define matsetvalues4_ MATSETVALUES4 1025 #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 1026 #define matsetvalues4_ matsetvalues4 1027 #endif 1028 1029 EXTERN_C_BEGIN 1030 #undef __FUNCT__ 1031 #define __FUNCT__ "MatSetValues4_" 1032 void PETSCMAT_DLLEXPORT matsetvalues4_(Mat *AA,PetscInt *mm,PetscInt *im,PetscInt *nn,PetscInt *in,PetscScalar *v) 1033 { 1034 Mat A = *AA; 1035 Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 1036 PetscInt *rp,k,low,high,t,ii,row,nrow,i,col,l,N,n = *nn,m = *mm; 1037 PetscInt *ai=a->i,*ailen=a->ilen; 1038 PetscInt *aj=a->j,brow,bcol; 1039 PetscInt ridx,cidx,lastcol = -1; 1040 MatScalar *ap,value,*aa=a->a,*bap; 1041 1042 PetscFunctionBegin; 1043 for (k=0; k<m; k++) { /* loop over added rows */ 1044 row = im[k]; brow = row/4; 1045 rp = aj + ai[brow]; 1046 ap = aa + 16*ai[brow]; 1047 nrow = ailen[brow]; 1048 low = 0; 1049 high = nrow; 1050 for (l=0; l<n; l++) { /* loop over added columns */ 1051 col = in[l]; bcol = col/4; 1052 ridx = row % 4; cidx = col % 4; 1053 value = v[l + k*n]; 1054 if (col <= lastcol) low = 0; else high = nrow; 1055 lastcol = col; 1056 while (high-low > 7) { 1057 t = (low+high)/2; 1058 if (rp[t] > bcol) high = t; 1059 else low = t; 1060 } 1061 for (i=low; i<high; i++) { 1062 if (rp[i] > bcol) break; 1063 if (rp[i] == bcol) { 1064 bap = ap + 16*i + 4*cidx + ridx; 1065 *bap += value; 1066 goto noinsert1; 1067 } 1068 } 1069 N = nrow++ - 1; 1070 high++; /* added new column thus must search to one higher than before */ 1071 /* shift up all the later entries in this row */ 1072 for (ii=N; ii>=i; ii--) { 1073 rp[ii+1] = rp[ii]; 1074 PetscMemcpy(ap+16*(ii+1),ap+16*(ii),16*sizeof(MatScalar)); 1075 } 1076 if (N>=i) { 1077 PetscMemzero(ap+16*i,16*sizeof(MatScalar)); 1078 } 1079 rp[i] = bcol; 1080 ap[16*i + 4*cidx + ridx] = value; 1081 noinsert1:; 1082 low = i; 1083 } 1084 ailen[brow] = nrow; 1085 } 1086 PetscFunctionReturnVoid(); 1087 } 1088 EXTERN_C_END 1089 1090 /* 1091 Checks for missing diagonals 1092 */ 1093 #undef __FUNCT__ 1094 #define __FUNCT__ "MatMissingDiagonal_SeqBAIJ" 1095 PetscErrorCode MatMissingDiagonal_SeqBAIJ(Mat A,PetscTruth *missing,PetscInt *d) 1096 { 1097 Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 1098 PetscErrorCode ierr; 1099 PetscInt *diag,*jj = a->j,i; 1100 1101 PetscFunctionBegin; 1102 ierr = MatMarkDiagonal_SeqBAIJ(A);CHKERRQ(ierr); 1103 *missing = PETSC_FALSE; 1104 diag = a->diag; 1105 for (i=0; i<a->mbs; i++) { 1106 if (jj[diag[i]] != i) { 1107 *missing = PETSC_TRUE; 1108 if (d) *d = i; 1109 } 1110 } 1111 PetscFunctionReturn(0); 1112 } 1113 1114 #undef __FUNCT__ 1115 #define __FUNCT__ "MatMarkDiagonal_SeqBAIJ" 1116 PetscErrorCode MatMarkDiagonal_SeqBAIJ(Mat A) 1117 { 1118 Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 1119 PetscErrorCode ierr; 1120 PetscInt i,j,m = a->mbs; 1121 1122 PetscFunctionBegin; 1123 if (!a->diag) { 1124 ierr = PetscMalloc(m*sizeof(PetscInt),&a->diag);CHKERRQ(ierr); 1125 } 1126 for (i=0; i<m; i++) { 1127 a->diag[i] = a->i[i+1]; 1128 for (j=a->i[i]; j<a->i[i+1]; j++) { 1129 if (a->j[j] == i) { 1130 a->diag[i] = j; 1131 break; 1132 } 1133 } 1134 } 1135 PetscFunctionReturn(0); 1136 } 1137 1138 1139 EXTERN PetscErrorCode MatToSymmetricIJ_SeqAIJ(PetscInt,PetscInt*,PetscInt*,PetscInt,PetscInt,PetscInt**,PetscInt**); 1140 1141 #undef __FUNCT__ 1142 #define __FUNCT__ "MatGetRowIJ_SeqBAIJ" 1143 static PetscErrorCode MatGetRowIJ_SeqBAIJ(Mat A,PetscInt oshift,PetscTruth symmetric,PetscTruth blockcompressed,PetscInt *nn,PetscInt *ia[],PetscInt *ja[],PetscTruth *done) 1144 { 1145 Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 1146 PetscErrorCode ierr; 1147 PetscInt i,j,n = a->mbs,nz = a->i[n],bs = A->rmap->bs,nbs = 1,k,l,cnt; 1148 PetscInt *tia, *tja; 1149 1150 PetscFunctionBegin; 1151 *nn = n; 1152 if (!ia) PetscFunctionReturn(0); 1153 if (symmetric) { 1154 ierr = MatToSymmetricIJ_SeqAIJ(n,a->i,a->j,0,0,&tia,&tja);CHKERRQ(ierr); 1155 } else { 1156 tia = a->i; tja = a->j; 1157 } 1158 1159 if (!blockcompressed && bs > 1) { 1160 (*nn) *= bs; 1161 nbs = bs; 1162 /* malloc & create the natural set of indices */ 1163 ierr = PetscMalloc((n+1)*bs*sizeof(PetscInt),ia);CHKERRQ(ierr); 1164 if (n) { 1165 (*ia)[0] = 0; 1166 for (j=1; j<bs; j++) { 1167 (*ia)[j] = (tia[1]-tia[0])*bs+(*ia)[j-1]; 1168 } 1169 } 1170 1171 for (i=1; i<n; i++) { 1172 (*ia)[i*bs] = (tia[i]-tia[i-1])*bs + (*ia)[i*bs-1]; 1173 for (j=1; j<bs; j++) { 1174 (*ia)[i*bs+j] = (tia[i+1]-tia[i])*bs + (*ia)[i*bs+j-1]; 1175 } 1176 } 1177 if (n) { 1178 (*ia)[n*bs] = (tia[n]-tia[n-1])*bs + (*ia)[n*bs-1]; 1179 } 1180 1181 if (ja) { 1182 ierr = PetscMalloc(nz*bs*bs*sizeof(PetscInt),ja);CHKERRQ(ierr); 1183 cnt = 0; 1184 for (i=0; i<n; i++) { 1185 for (j=0; j<bs; j++) { 1186 for (k=tia[i]; k<tia[i+1]; k++) { 1187 for (l=0; l<bs; l++) { 1188 (*ja)[cnt++] = bs*tja[k] + l; 1189 } 1190 } 1191 } 1192 } 1193 } 1194 1195 n *= bs; 1196 nz *= bs*bs; 1197 if (symmetric) { /* deallocate memory allocated in MatToSymmetricIJ_SeqAIJ() */ 1198 ierr = PetscFree(tia);CHKERRQ(ierr); 1199 ierr = PetscFree(tja);CHKERRQ(ierr); 1200 } 1201 } else { 1202 *ia = tia; 1203 if (ja) *ja = tja; 1204 } 1205 if (oshift == 1) { 1206 for (i=0; i<n+nbs; i++) (*ia)[i]++; 1207 if (ja) for (i=0; i<nz; i++) (*ja)[i]++; 1208 } 1209 PetscFunctionReturn(0); 1210 } 1211 1212 #undef __FUNCT__ 1213 #define __FUNCT__ "MatRestoreRowIJ_SeqBAIJ" 1214 static PetscErrorCode MatRestoreRowIJ_SeqBAIJ(Mat A,PetscInt oshift,PetscTruth symmetric,PetscTruth blockcompressed,PetscInt *nn,PetscInt *ia[],PetscInt *ja[],PetscTruth *done) 1215 { 1216 Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 1217 PetscErrorCode ierr; 1218 PetscInt i,n = a->mbs,nz = a->i[n]; 1219 1220 PetscFunctionBegin; 1221 if (!ia) PetscFunctionReturn(0); 1222 if (!blockcompressed && A->rmap->bs > 1) { 1223 ierr = PetscFree(*ia);CHKERRQ(ierr); 1224 if (ja) {ierr = PetscFree(*ja);CHKERRQ(ierr);} 1225 } else if (symmetric) { 1226 ierr = PetscFree(*ia);CHKERRQ(ierr); 1227 if (ja) {ierr = PetscFree(*ja);CHKERRQ(ierr);} 1228 } else if (oshift == 1) { /* blockcompressed */ 1229 for (i=0; i<n+1; i++) a->i[i]--; 1230 if (ja) {for (i=0; i<nz; i++) a->j[i]--;} 1231 } 1232 PetscFunctionReturn(0); 1233 } 1234 1235 #undef __FUNCT__ 1236 #define __FUNCT__ "MatDestroy_SeqBAIJ" 1237 PetscErrorCode MatDestroy_SeqBAIJ(Mat A) 1238 { 1239 Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 1240 PetscErrorCode ierr; 1241 1242 PetscFunctionBegin; 1243 #if defined(PETSC_USE_LOG) 1244 PetscLogObjectState((PetscObject)A,"Rows=%D, Cols=%D, NZ=%D",A->rmap->N,A->cmap->n,a->nz); 1245 #endif 1246 ierr = MatSeqXAIJFreeAIJ(A,&a->a,&a->j,&a->i);CHKERRQ(ierr); 1247 if (a->row) { 1248 ierr = ISDestroy(a->row);CHKERRQ(ierr); 1249 } 1250 if (a->col) { 1251 ierr = ISDestroy(a->col);CHKERRQ(ierr); 1252 } 1253 ierr = PetscFree(a->diag);CHKERRQ(ierr); 1254 ierr = PetscFree(a->idiag);CHKERRQ(ierr); 1255 ierr = PetscFree2(a->imax,a->ilen);CHKERRQ(ierr); 1256 ierr = PetscFree(a->solve_work);CHKERRQ(ierr); 1257 ierr = PetscFree(a->mult_work);CHKERRQ(ierr); 1258 if (a->icol) {ierr = ISDestroy(a->icol);CHKERRQ(ierr);} 1259 ierr = PetscFree(a->saved_values);CHKERRQ(ierr); 1260 ierr = PetscFree(a->xtoy);CHKERRQ(ierr); 1261 if (a->compressedrow.use){ierr = PetscFree(a->compressedrow.i);} 1262 1263 if (a->sbaijMat) {ierr = MatDestroy(a->sbaijMat);CHKERRQ(ierr);} 1264 ierr = PetscFree(a);CHKERRQ(ierr); 1265 1266 ierr = PetscObjectChangeTypeName((PetscObject)A,0);CHKERRQ(ierr); 1267 ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqBAIJInvertBlockDiagonal_C","",PETSC_NULL);CHKERRQ(ierr); 1268 ierr = PetscObjectComposeFunction((PetscObject)A,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 1269 ierr = PetscObjectComposeFunction((PetscObject)A,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 1270 ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqBAIJSetColumnIndices_C","",PETSC_NULL);CHKERRQ(ierr); 1271 ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqbaij_seqaij_C","",PETSC_NULL);CHKERRQ(ierr); 1272 ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqbaij_seqsbaij_C","",PETSC_NULL);CHKERRQ(ierr); 1273 ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 1274 ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqBAIJSetPreallocationCSR_C","",PETSC_NULL);CHKERRQ(ierr); 1275 PetscFunctionReturn(0); 1276 } 1277 1278 #undef __FUNCT__ 1279 #define __FUNCT__ "MatSetOption_SeqBAIJ" 1280 PetscErrorCode MatSetOption_SeqBAIJ(Mat A,MatOption op,PetscTruth flg) 1281 { 1282 Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 1283 PetscErrorCode ierr; 1284 1285 PetscFunctionBegin; 1286 switch (op) { 1287 case MAT_ROW_ORIENTED: 1288 a->roworiented = flg; 1289 break; 1290 case MAT_KEEP_ZEROED_ROWS: 1291 a->keepzeroedrows = flg; 1292 break; 1293 case MAT_NEW_NONZERO_LOCATIONS: 1294 a->nonew = (flg ? 0 : 1); 1295 break; 1296 case MAT_NEW_NONZERO_LOCATION_ERR: 1297 a->nonew = (flg ? -1 : 0); 1298 break; 1299 case MAT_NEW_NONZERO_ALLOCATION_ERR: 1300 a->nonew = (flg ? -2 : 0); 1301 break; 1302 case MAT_UNUSED_NONZERO_LOCATION_ERR: 1303 a->nounused = (flg ? -1 : 0); 1304 break; 1305 case MAT_NEW_DIAGONALS: 1306 case MAT_IGNORE_OFF_PROC_ENTRIES: 1307 case MAT_USE_HASH_TABLE: 1308 ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 1309 break; 1310 case MAT_SYMMETRIC: 1311 case MAT_STRUCTURALLY_SYMMETRIC: 1312 case MAT_HERMITIAN: 1313 case MAT_SYMMETRY_ETERNAL: 1314 ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 1315 break; 1316 default: 1317 SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op); 1318 } 1319 PetscFunctionReturn(0); 1320 } 1321 1322 #undef __FUNCT__ 1323 #define __FUNCT__ "MatGetRow_SeqBAIJ" 1324 PetscErrorCode MatGetRow_SeqBAIJ(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1325 { 1326 Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 1327 PetscErrorCode ierr; 1328 PetscInt itmp,i,j,k,M,*ai,*aj,bs,bn,bp,*idx_i,bs2; 1329 MatScalar *aa,*aa_i; 1330 PetscScalar *v_i; 1331 1332 PetscFunctionBegin; 1333 bs = A->rmap->bs; 1334 ai = a->i; 1335 aj = a->j; 1336 aa = a->a; 1337 bs2 = a->bs2; 1338 1339 if (row < 0 || row >= A->rmap->N) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Row %D out of range", row); 1340 1341 bn = row/bs; /* Block number */ 1342 bp = row % bs; /* Block Position */ 1343 M = ai[bn+1] - ai[bn]; 1344 *nz = bs*M; 1345 1346 if (v) { 1347 *v = 0; 1348 if (*nz) { 1349 ierr = PetscMalloc((*nz)*sizeof(PetscScalar),v);CHKERRQ(ierr); 1350 for (i=0; i<M; i++) { /* for each block in the block row */ 1351 v_i = *v + i*bs; 1352 aa_i = aa + bs2*(ai[bn] + i); 1353 for (j=bp,k=0; j<bs2; j+=bs,k++) {v_i[k] = aa_i[j];} 1354 } 1355 } 1356 } 1357 1358 if (idx) { 1359 *idx = 0; 1360 if (*nz) { 1361 ierr = PetscMalloc((*nz)*sizeof(PetscInt),idx);CHKERRQ(ierr); 1362 for (i=0; i<M; i++) { /* for each block in the block row */ 1363 idx_i = *idx + i*bs; 1364 itmp = bs*aj[ai[bn] + i]; 1365 for (j=0; j<bs; j++) {idx_i[j] = itmp++;} 1366 } 1367 } 1368 } 1369 PetscFunctionReturn(0); 1370 } 1371 1372 #undef __FUNCT__ 1373 #define __FUNCT__ "MatRestoreRow_SeqBAIJ" 1374 PetscErrorCode MatRestoreRow_SeqBAIJ(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1375 { 1376 PetscErrorCode ierr; 1377 1378 PetscFunctionBegin; 1379 if (idx) {ierr = PetscFree(*idx);CHKERRQ(ierr);} 1380 if (v) {ierr = PetscFree(*v);CHKERRQ(ierr);} 1381 PetscFunctionReturn(0); 1382 } 1383 1384 #undef __FUNCT__ 1385 #define __FUNCT__ "MatTranspose_SeqBAIJ" 1386 PetscErrorCode MatTranspose_SeqBAIJ(Mat A,MatReuse reuse,Mat *B) 1387 { 1388 Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data; 1389 Mat C; 1390 PetscErrorCode ierr; 1391 PetscInt i,j,k,*aj=a->j,*ai=a->i,bs=A->rmap->bs,mbs=a->mbs,nbs=a->nbs,len,*col; 1392 PetscInt *rows,*cols,bs2=a->bs2; 1393 MatScalar *array; 1394 1395 PetscFunctionBegin; 1396 if (reuse == MAT_REUSE_MATRIX && A == *B && mbs != nbs) SETERRQ(PETSC_ERR_ARG_SIZ,"Square matrix only for in-place"); 1397 if (reuse == MAT_INITIAL_MATRIX || A == *B) { 1398 ierr = PetscMalloc((1+nbs)*sizeof(PetscInt),&col);CHKERRQ(ierr); 1399 ierr = PetscMemzero(col,(1+nbs)*sizeof(PetscInt));CHKERRQ(ierr); 1400 1401 for (i=0; i<ai[mbs]; i++) col[aj[i]] += 1; 1402 ierr = MatCreate(((PetscObject)A)->comm,&C);CHKERRQ(ierr); 1403 ierr = MatSetSizes(C,A->cmap->n,A->rmap->N,A->cmap->n,A->rmap->N);CHKERRQ(ierr); 1404 ierr = MatSetType(C,((PetscObject)A)->type_name);CHKERRQ(ierr); 1405 ierr = MatSeqBAIJSetPreallocation_SeqBAIJ(C,bs,PETSC_NULL,col);CHKERRQ(ierr); 1406 ierr = PetscFree(col);CHKERRQ(ierr); 1407 } else { 1408 C = *B; 1409 } 1410 1411 array = a->a; 1412 ierr = PetscMalloc(2*bs*sizeof(PetscInt),&rows);CHKERRQ(ierr); 1413 cols = rows + bs; 1414 for (i=0; i<mbs; i++) { 1415 cols[0] = i*bs; 1416 for (k=1; k<bs; k++) cols[k] = cols[k-1] + 1; 1417 len = ai[i+1] - ai[i]; 1418 for (j=0; j<len; j++) { 1419 rows[0] = (*aj++)*bs; 1420 for (k=1; k<bs; k++) rows[k] = rows[k-1] + 1; 1421 ierr = MatSetValues(C,bs,rows,bs,cols,array,INSERT_VALUES);CHKERRQ(ierr); 1422 array += bs2; 1423 } 1424 } 1425 ierr = PetscFree(rows);CHKERRQ(ierr); 1426 1427 ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1428 ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1429 1430 if (reuse == MAT_INITIAL_MATRIX || *B != A) { 1431 *B = C; 1432 } else { 1433 ierr = MatHeaderCopy(A,C);CHKERRQ(ierr); 1434 } 1435 PetscFunctionReturn(0); 1436 } 1437 1438 #undef __FUNCT__ 1439 #define __FUNCT__ "MatView_SeqBAIJ_Binary" 1440 static PetscErrorCode MatView_SeqBAIJ_Binary(Mat A,PetscViewer viewer) 1441 { 1442 Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 1443 PetscErrorCode ierr; 1444 PetscInt i,*col_lens,bs = A->rmap->bs,count,*jj,j,k,l,bs2=a->bs2; 1445 int fd; 1446 PetscScalar *aa; 1447 FILE *file; 1448 1449 PetscFunctionBegin; 1450 ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 1451 ierr = PetscMalloc((4+A->rmap->N)*sizeof(PetscInt),&col_lens);CHKERRQ(ierr); 1452 col_lens[0] = MAT_FILE_COOKIE; 1453 1454 col_lens[1] = A->rmap->N; 1455 col_lens[2] = A->cmap->n; 1456 col_lens[3] = a->nz*bs2; 1457 1458 /* store lengths of each row and write (including header) to file */ 1459 count = 0; 1460 for (i=0; i<a->mbs; i++) { 1461 for (j=0; j<bs; j++) { 1462 col_lens[4+count++] = bs*(a->i[i+1] - a->i[i]); 1463 } 1464 } 1465 ierr = PetscBinaryWrite(fd,col_lens,4+A->rmap->N,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 1466 ierr = PetscFree(col_lens);CHKERRQ(ierr); 1467 1468 /* store column indices (zero start index) */ 1469 ierr = PetscMalloc((a->nz+1)*bs2*sizeof(PetscInt),&jj);CHKERRQ(ierr); 1470 count = 0; 1471 for (i=0; i<a->mbs; i++) { 1472 for (j=0; j<bs; j++) { 1473 for (k=a->i[i]; k<a->i[i+1]; k++) { 1474 for (l=0; l<bs; l++) { 1475 jj[count++] = bs*a->j[k] + l; 1476 } 1477 } 1478 } 1479 } 1480 ierr = PetscBinaryWrite(fd,jj,bs2*a->nz,PETSC_INT,PETSC_FALSE);CHKERRQ(ierr); 1481 ierr = PetscFree(jj);CHKERRQ(ierr); 1482 1483 /* store nonzero values */ 1484 ierr = PetscMalloc((a->nz+1)*bs2*sizeof(PetscScalar),&aa);CHKERRQ(ierr); 1485 count = 0; 1486 for (i=0; i<a->mbs; i++) { 1487 for (j=0; j<bs; j++) { 1488 for (k=a->i[i]; k<a->i[i+1]; k++) { 1489 for (l=0; l<bs; l++) { 1490 aa[count++] = a->a[bs2*k + l*bs + j]; 1491 } 1492 } 1493 } 1494 } 1495 ierr = PetscBinaryWrite(fd,aa,bs2*a->nz,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr); 1496 ierr = PetscFree(aa);CHKERRQ(ierr); 1497 1498 ierr = PetscViewerBinaryGetInfoPointer(viewer,&file);CHKERRQ(ierr); 1499 if (file) { 1500 fprintf(file,"-matload_block_size %d\n",(int)A->rmap->bs); 1501 } 1502 PetscFunctionReturn(0); 1503 } 1504 1505 #undef __FUNCT__ 1506 #define __FUNCT__ "MatView_SeqBAIJ_ASCII" 1507 static PetscErrorCode MatView_SeqBAIJ_ASCII(Mat A,PetscViewer viewer) 1508 { 1509 Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 1510 PetscErrorCode ierr; 1511 PetscInt i,j,bs = A->rmap->bs,k,l,bs2=a->bs2; 1512 PetscViewerFormat format; 1513 1514 PetscFunctionBegin; 1515 ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 1516 if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 1517 ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 1518 } else if (format == PETSC_VIEWER_ASCII_MATLAB) { 1519 Mat aij; 1520 ierr = MatConvert(A,MATSEQAIJ,MAT_INITIAL_MATRIX,&aij);CHKERRQ(ierr); 1521 ierr = MatView(aij,viewer);CHKERRQ(ierr); 1522 ierr = MatDestroy(aij);CHKERRQ(ierr); 1523 } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 1524 PetscFunctionReturn(0); 1525 } else if (format == PETSC_VIEWER_ASCII_COMMON) { 1526 ierr = PetscViewerASCIIUseTabs(viewer,PETSC_NO);CHKERRQ(ierr); 1527 for (i=0; i<a->mbs; i++) { 1528 for (j=0; j<bs; j++) { 1529 ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i*bs+j);CHKERRQ(ierr); 1530 for (k=a->i[i]; k<a->i[i+1]; k++) { 1531 for (l=0; l<bs; l++) { 1532 #if defined(PETSC_USE_COMPLEX) 1533 if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) > 0.0 && PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) { 1534 ierr = PetscViewerASCIIPrintf(viewer," (%D, %G + %Gi) ",bs*a->j[k]+l, 1535 PetscRealPart(a->a[bs2*k + l*bs + j]),PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 1536 } else if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) < 0.0 && PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) { 1537 ierr = PetscViewerASCIIPrintf(viewer," (%D, %G - %Gi) ",bs*a->j[k]+l, 1538 PetscRealPart(a->a[bs2*k + l*bs + j]),-PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 1539 } else if (PetscRealPart(a->a[bs2*k + l*bs + j]) != 0.0) { 1540 ierr = PetscViewerASCIIPrintf(viewer," (%D, %G) ",bs*a->j[k]+l,PetscRealPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 1541 } 1542 #else 1543 if (a->a[bs2*k + l*bs + j] != 0.0) { 1544 ierr = PetscViewerASCIIPrintf(viewer," (%D, %G) ",bs*a->j[k]+l,a->a[bs2*k + l*bs + j]);CHKERRQ(ierr); 1545 } 1546 #endif 1547 } 1548 } 1549 ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 1550 } 1551 } 1552 ierr = PetscViewerASCIIUseTabs(viewer,PETSC_YES);CHKERRQ(ierr); 1553 } else { 1554 ierr = PetscViewerASCIIUseTabs(viewer,PETSC_NO);CHKERRQ(ierr); 1555 for (i=0; i<a->mbs; i++) { 1556 for (j=0; j<bs; j++) { 1557 ierr = PetscViewerASCIIPrintf(viewer,"row %D:",i*bs+j);CHKERRQ(ierr); 1558 for (k=a->i[i]; k<a->i[i+1]; k++) { 1559 for (l=0; l<bs; l++) { 1560 #if defined(PETSC_USE_COMPLEX) 1561 if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) > 0.0) { 1562 ierr = PetscViewerASCIIPrintf(viewer," (%D, %G + %G i) ",bs*a->j[k]+l, 1563 PetscRealPart(a->a[bs2*k + l*bs + j]),PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 1564 } else if (PetscImaginaryPart(a->a[bs2*k + l*bs + j]) < 0.0) { 1565 ierr = PetscViewerASCIIPrintf(viewer," (%D, %G - %G i) ",bs*a->j[k]+l, 1566 PetscRealPart(a->a[bs2*k + l*bs + j]),-PetscImaginaryPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 1567 } else { 1568 ierr = PetscViewerASCIIPrintf(viewer," (%D, %G) ",bs*a->j[k]+l,PetscRealPart(a->a[bs2*k + l*bs + j]));CHKERRQ(ierr); 1569 } 1570 #else 1571 ierr = PetscViewerASCIIPrintf(viewer," (%D, %G) ",bs*a->j[k]+l,a->a[bs2*k + l*bs + j]);CHKERRQ(ierr); 1572 #endif 1573 } 1574 } 1575 ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr); 1576 } 1577 } 1578 ierr = PetscViewerASCIIUseTabs(viewer,PETSC_YES);CHKERRQ(ierr); 1579 } 1580 ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 1581 PetscFunctionReturn(0); 1582 } 1583 1584 #undef __FUNCT__ 1585 #define __FUNCT__ "MatView_SeqBAIJ_Draw_Zoom" 1586 static PetscErrorCode MatView_SeqBAIJ_Draw_Zoom(PetscDraw draw,void *Aa) 1587 { 1588 Mat A = (Mat) Aa; 1589 Mat_SeqBAIJ *a=(Mat_SeqBAIJ*)A->data; 1590 PetscErrorCode ierr; 1591 PetscInt row,i,j,k,l,mbs=a->mbs,color,bs=A->rmap->bs,bs2=a->bs2; 1592 PetscReal xl,yl,xr,yr,x_l,x_r,y_l,y_r; 1593 MatScalar *aa; 1594 PetscViewer viewer; 1595 1596 PetscFunctionBegin; 1597 1598 /* still need to add support for contour plot of nonzeros; see MatView_SeqAIJ_Draw_Zoom()*/ 1599 ierr = PetscObjectQuery((PetscObject)A,"Zoomviewer",(PetscObject*)&viewer);CHKERRQ(ierr); 1600 1601 ierr = PetscDrawGetCoordinates(draw,&xl,&yl,&xr,&yr);CHKERRQ(ierr); 1602 1603 /* loop over matrix elements drawing boxes */ 1604 color = PETSC_DRAW_BLUE; 1605 for (i=0,row=0; i<mbs; i++,row+=bs) { 1606 for (j=a->i[i]; j<a->i[i+1]; j++) { 1607 y_l = A->rmap->N - row - 1.0; y_r = y_l + 1.0; 1608 x_l = a->j[j]*bs; x_r = x_l + 1.0; 1609 aa = a->a + j*bs2; 1610 for (k=0; k<bs; k++) { 1611 for (l=0; l<bs; l++) { 1612 if (PetscRealPart(*aa++) >= 0.) continue; 1613 ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr); 1614 } 1615 } 1616 } 1617 } 1618 color = PETSC_DRAW_CYAN; 1619 for (i=0,row=0; i<mbs; i++,row+=bs) { 1620 for (j=a->i[i]; j<a->i[i+1]; j++) { 1621 y_l = A->rmap->N - row - 1.0; y_r = y_l + 1.0; 1622 x_l = a->j[j]*bs; x_r = x_l + 1.0; 1623 aa = a->a + j*bs2; 1624 for (k=0; k<bs; k++) { 1625 for (l=0; l<bs; l++) { 1626 if (PetscRealPart(*aa++) != 0.) continue; 1627 ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr); 1628 } 1629 } 1630 } 1631 } 1632 1633 color = PETSC_DRAW_RED; 1634 for (i=0,row=0; i<mbs; i++,row+=bs) { 1635 for (j=a->i[i]; j<a->i[i+1]; j++) { 1636 y_l = A->rmap->N - row - 1.0; y_r = y_l + 1.0; 1637 x_l = a->j[j]*bs; x_r = x_l + 1.0; 1638 aa = a->a + j*bs2; 1639 for (k=0; k<bs; k++) { 1640 for (l=0; l<bs; l++) { 1641 if (PetscRealPart(*aa++) <= 0.) continue; 1642 ierr = PetscDrawRectangle(draw,x_l+k,y_l-l,x_r+k,y_r-l,color,color,color,color);CHKERRQ(ierr); 1643 } 1644 } 1645 } 1646 } 1647 PetscFunctionReturn(0); 1648 } 1649 1650 #undef __FUNCT__ 1651 #define __FUNCT__ "MatView_SeqBAIJ_Draw" 1652 static PetscErrorCode MatView_SeqBAIJ_Draw(Mat A,PetscViewer viewer) 1653 { 1654 PetscErrorCode ierr; 1655 PetscReal xl,yl,xr,yr,w,h; 1656 PetscDraw draw; 1657 PetscTruth isnull; 1658 1659 PetscFunctionBegin; 1660 1661 ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 1662 ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 1663 1664 ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",(PetscObject)viewer);CHKERRQ(ierr); 1665 xr = A->cmap->n; yr = A->rmap->N; h = yr/10.0; w = xr/10.0; 1666 xr += w; yr += h; xl = -w; yl = -h; 1667 ierr = PetscDrawSetCoordinates(draw,xl,yl,xr,yr);CHKERRQ(ierr); 1668 ierr = PetscDrawZoom(draw,MatView_SeqBAIJ_Draw_Zoom,A);CHKERRQ(ierr); 1669 ierr = PetscObjectCompose((PetscObject)A,"Zoomviewer",PETSC_NULL);CHKERRQ(ierr); 1670 PetscFunctionReturn(0); 1671 } 1672 1673 #undef __FUNCT__ 1674 #define __FUNCT__ "MatView_SeqBAIJ" 1675 PetscErrorCode MatView_SeqBAIJ(Mat A,PetscViewer viewer) 1676 { 1677 PetscErrorCode ierr; 1678 PetscTruth iascii,isbinary,isdraw; 1679 1680 PetscFunctionBegin; 1681 ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 1682 ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 1683 ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 1684 if (iascii){ 1685 ierr = MatView_SeqBAIJ_ASCII(A,viewer);CHKERRQ(ierr); 1686 } else if (isbinary) { 1687 ierr = MatView_SeqBAIJ_Binary(A,viewer);CHKERRQ(ierr); 1688 } else if (isdraw) { 1689 ierr = MatView_SeqBAIJ_Draw(A,viewer);CHKERRQ(ierr); 1690 } else { 1691 Mat B; 1692 ierr = MatConvert(A,MATSEQAIJ,MAT_INITIAL_MATRIX,&B);CHKERRQ(ierr); 1693 ierr = MatView(B,viewer);CHKERRQ(ierr); 1694 ierr = MatDestroy(B);CHKERRQ(ierr); 1695 } 1696 PetscFunctionReturn(0); 1697 } 1698 1699 1700 #undef __FUNCT__ 1701 #define __FUNCT__ "MatGetValues_SeqBAIJ" 1702 PetscErrorCode MatGetValues_SeqBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],PetscScalar v[]) 1703 { 1704 Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 1705 PetscInt *rp,k,low,high,t,row,nrow,i,col,l,*aj = a->j; 1706 PetscInt *ai = a->i,*ailen = a->ilen; 1707 PetscInt brow,bcol,ridx,cidx,bs=A->rmap->bs,bs2=a->bs2; 1708 MatScalar *ap,*aa = a->a; 1709 1710 PetscFunctionBegin; 1711 for (k=0; k<m; k++) { /* loop over rows */ 1712 row = im[k]; brow = row/bs; 1713 if (row < 0) {v += n; continue;} /* SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); */ 1714 if (row >= A->rmap->N) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Row %D too large", row); 1715 rp = aj + ai[brow] ; ap = aa + bs2*ai[brow] ; 1716 nrow = ailen[brow]; 1717 for (l=0; l<n; l++) { /* loop over columns */ 1718 if (in[l] < 0) {v++; continue;} /* SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); */ 1719 if (in[l] >= A->cmap->n) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Column %D too large", in[l]); 1720 col = in[l] ; 1721 bcol = col/bs; 1722 cidx = col%bs; 1723 ridx = row%bs; 1724 high = nrow; 1725 low = 0; /* assume unsorted */ 1726 while (high-low > 5) { 1727 t = (low+high)/2; 1728 if (rp[t] > bcol) high = t; 1729 else low = t; 1730 } 1731 for (i=low; i<high; i++) { 1732 if (rp[i] > bcol) break; 1733 if (rp[i] == bcol) { 1734 *v++ = ap[bs2*i+bs*cidx+ridx]; 1735 goto finished; 1736 } 1737 } 1738 *v++ = 0.0; 1739 finished:; 1740 } 1741 } 1742 PetscFunctionReturn(0); 1743 } 1744 1745 #define CHUNKSIZE 10 1746 #undef __FUNCT__ 1747 #define __FUNCT__ "MatSetValuesBlocked_SeqBAIJ" 1748 PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is) 1749 { 1750 Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 1751 PetscInt *rp,k,low,high,t,ii,jj,row,nrow,i,col,l,rmax,N,lastcol = -1; 1752 PetscInt *imax=a->imax,*ai=a->i,*ailen=a->ilen; 1753 PetscErrorCode ierr; 1754 PetscInt *aj=a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs,stepval; 1755 PetscTruth roworiented=a->roworiented; 1756 const PetscScalar *value = v; 1757 MatScalar *ap,*aa = a->a,*bap; 1758 1759 PetscFunctionBegin; 1760 if (roworiented) { 1761 stepval = (n-1)*bs; 1762 } else { 1763 stepval = (m-1)*bs; 1764 } 1765 for (k=0; k<m; k++) { /* loop over added rows */ 1766 row = im[k]; 1767 if (row < 0) continue; 1768 #if defined(PETSC_USE_DEBUG) 1769 if (row >= a->mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,a->mbs-1); 1770 #endif 1771 rp = aj + ai[row]; 1772 ap = aa + bs2*ai[row]; 1773 rmax = imax[row]; 1774 nrow = ailen[row]; 1775 low = 0; 1776 high = nrow; 1777 for (l=0; l<n; l++) { /* loop over added columns */ 1778 if (in[l] < 0) continue; 1779 #if defined(PETSC_USE_DEBUG) 1780 if (in[l] >= a->nbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[l],a->nbs-1); 1781 #endif 1782 col = in[l]; 1783 if (roworiented) { 1784 value = v + k*(stepval+bs)*bs + l*bs; 1785 } else { 1786 value = v + l*(stepval+bs)*bs + k*bs; 1787 } 1788 if (col <= lastcol) low = 0; else high = nrow; 1789 lastcol = col; 1790 while (high-low > 7) { 1791 t = (low+high)/2; 1792 if (rp[t] > col) high = t; 1793 else low = t; 1794 } 1795 for (i=low; i<high; i++) { 1796 if (rp[i] > col) break; 1797 if (rp[i] == col) { 1798 bap = ap + bs2*i; 1799 if (roworiented) { 1800 if (is == ADD_VALUES) { 1801 for (ii=0; ii<bs; ii++,value+=stepval) { 1802 for (jj=ii; jj<bs2; jj+=bs) { 1803 bap[jj] += *value++; 1804 } 1805 } 1806 } else { 1807 for (ii=0; ii<bs; ii++,value+=stepval) { 1808 for (jj=ii; jj<bs2; jj+=bs) { 1809 bap[jj] = *value++; 1810 } 1811 } 1812 } 1813 } else { 1814 if (is == ADD_VALUES) { 1815 for (ii=0; ii<bs; ii++,value+=stepval) { 1816 for (jj=0; jj<bs; jj++) { 1817 *bap++ += *value++; 1818 } 1819 } 1820 } else { 1821 for (ii=0; ii<bs; ii++,value+=stepval) { 1822 for (jj=0; jj<bs; jj++) { 1823 *bap++ = *value++; 1824 } 1825 } 1826 } 1827 } 1828 goto noinsert2; 1829 } 1830 } 1831 if (nonew == 1) goto noinsert2; 1832 if (nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col); 1833 MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 1834 N = nrow++ - 1; high++; 1835 /* shift up all the later entries in this row */ 1836 for (ii=N; ii>=i; ii--) { 1837 rp[ii+1] = rp[ii]; 1838 ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); 1839 } 1840 if (N >= i) { 1841 ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr); 1842 } 1843 rp[i] = col; 1844 bap = ap + bs2*i; 1845 if (roworiented) { 1846 for (ii=0; ii<bs; ii++,value+=stepval) { 1847 for (jj=ii; jj<bs2; jj+=bs) { 1848 bap[jj] = *value++; 1849 } 1850 } 1851 } else { 1852 for (ii=0; ii<bs; ii++,value+=stepval) { 1853 for (jj=0; jj<bs; jj++) { 1854 *bap++ = *value++; 1855 } 1856 } 1857 } 1858 noinsert2:; 1859 low = i; 1860 } 1861 ailen[row] = nrow; 1862 } 1863 PetscFunctionReturn(0); 1864 } 1865 1866 #undef __FUNCT__ 1867 #define __FUNCT__ "MatAssemblyEnd_SeqBAIJ" 1868 PetscErrorCode MatAssemblyEnd_SeqBAIJ(Mat A,MatAssemblyType mode) 1869 { 1870 Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 1871 PetscInt fshift = 0,i,j,*ai = a->i,*aj = a->j,*imax = a->imax; 1872 PetscInt m = A->rmap->N,*ip,N,*ailen = a->ilen; 1873 PetscErrorCode ierr; 1874 PetscInt mbs = a->mbs,bs2 = a->bs2,rmax = 0; 1875 MatScalar *aa = a->a,*ap; 1876 PetscReal ratio=0.6; 1877 1878 PetscFunctionBegin; 1879 if (mode == MAT_FLUSH_ASSEMBLY) PetscFunctionReturn(0); 1880 1881 if (m) rmax = ailen[0]; 1882 for (i=1; i<mbs; i++) { 1883 /* move each row back by the amount of empty slots (fshift) before it*/ 1884 fshift += imax[i-1] - ailen[i-1]; 1885 rmax = PetscMax(rmax,ailen[i]); 1886 if (fshift) { 1887 ip = aj + ai[i]; ap = aa + bs2*ai[i]; 1888 N = ailen[i]; 1889 for (j=0; j<N; j++) { 1890 ip[j-fshift] = ip[j]; 1891 ierr = PetscMemcpy(ap+(j-fshift)*bs2,ap+j*bs2,bs2*sizeof(MatScalar));CHKERRQ(ierr); 1892 } 1893 } 1894 ai[i] = ai[i-1] + ailen[i-1]; 1895 } 1896 if (mbs) { 1897 fshift += imax[mbs-1] - ailen[mbs-1]; 1898 ai[mbs] = ai[mbs-1] + ailen[mbs-1]; 1899 } 1900 /* reset ilen and imax for each row */ 1901 for (i=0; i<mbs; i++) { 1902 ailen[i] = imax[i] = ai[i+1] - ai[i]; 1903 } 1904 a->nz = ai[mbs]; 1905 1906 /* diagonals may have moved, so kill the diagonal pointers */ 1907 a->idiagvalid = PETSC_FALSE; 1908 if (fshift && a->diag) { 1909 ierr = PetscFree(a->diag);CHKERRQ(ierr); 1910 ierr = PetscLogObjectMemory(A,-(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr); 1911 a->diag = 0; 1912 } 1913 if (fshift && a->nounused == -1) { 1914 SETERRQ4(PETSC_ERR_PLIB, "Unused space detected in matrix: %D X %D block size %D, %D unneeded", m, A->cmap->n, A->rmap->bs, fshift*bs2); 1915 } 1916 ierr = PetscInfo5(A,"Matrix size: %D X %D, block size %D; storage space: %D unneeded, %D used\n",m,A->cmap->n,A->rmap->bs,fshift*bs2,a->nz*bs2);CHKERRQ(ierr); 1917 ierr = PetscInfo1(A,"Number of mallocs during MatSetValues is %D\n",a->reallocs);CHKERRQ(ierr); 1918 ierr = PetscInfo1(A,"Most nonzeros blocks in any row is %D\n",rmax);CHKERRQ(ierr); 1919 a->reallocs = 0; 1920 A->info.nz_unneeded = (PetscReal)fshift*bs2; 1921 1922 /* check for zero rows. If found a large number of zero rows, use CompressedRow functions */ 1923 if (a->compressedrow.use){ 1924 ierr = Mat_CheckCompressedRow(A,&a->compressedrow,a->i,mbs,ratio);CHKERRQ(ierr); 1925 } 1926 1927 A->same_nonzero = PETSC_TRUE; 1928 PetscFunctionReturn(0); 1929 } 1930 1931 /* 1932 This function returns an array of flags which indicate the locations of contiguous 1933 blocks that should be zeroed. for eg: if bs = 3 and is = [0,1,2,3,5,6,7,8,9] 1934 then the resulting sizes = [3,1,1,3,1] correspondig to sets [(0,1,2),(3),(5),(6,7,8),(9)] 1935 Assume: sizes should be long enough to hold all the values. 1936 */ 1937 #undef __FUNCT__ 1938 #define __FUNCT__ "MatZeroRows_SeqBAIJ_Check_Blocks" 1939 static PetscErrorCode MatZeroRows_SeqBAIJ_Check_Blocks(PetscInt idx[],PetscInt n,PetscInt bs,PetscInt sizes[], PetscInt *bs_max) 1940 { 1941 PetscInt i,j,k,row; 1942 PetscTruth flg; 1943 1944 PetscFunctionBegin; 1945 for (i=0,j=0; i<n; j++) { 1946 row = idx[i]; 1947 if (row%bs!=0) { /* Not the begining of a block */ 1948 sizes[j] = 1; 1949 i++; 1950 } else if (i+bs > n) { /* complete block doesn't exist (at idx end) */ 1951 sizes[j] = 1; /* Also makes sure atleast 'bs' values exist for next else */ 1952 i++; 1953 } else { /* Begining of the block, so check if the complete block exists */ 1954 flg = PETSC_TRUE; 1955 for (k=1; k<bs; k++) { 1956 if (row+k != idx[i+k]) { /* break in the block */ 1957 flg = PETSC_FALSE; 1958 break; 1959 } 1960 } 1961 if (flg) { /* No break in the bs */ 1962 sizes[j] = bs; 1963 i+= bs; 1964 } else { 1965 sizes[j] = 1; 1966 i++; 1967 } 1968 } 1969 } 1970 *bs_max = j; 1971 PetscFunctionReturn(0); 1972 } 1973 1974 #undef __FUNCT__ 1975 #define __FUNCT__ "MatZeroRows_SeqBAIJ" 1976 PetscErrorCode MatZeroRows_SeqBAIJ(Mat A,PetscInt is_n,const PetscInt is_idx[],PetscScalar diag) 1977 { 1978 Mat_SeqBAIJ *baij=(Mat_SeqBAIJ*)A->data; 1979 PetscErrorCode ierr; 1980 PetscInt i,j,k,count,*rows; 1981 PetscInt bs=A->rmap->bs,bs2=baij->bs2,*sizes,row,bs_max; 1982 PetscScalar zero = 0.0; 1983 MatScalar *aa; 1984 1985 PetscFunctionBegin; 1986 /* Make a copy of the IS and sort it */ 1987 /* allocate memory for rows,sizes */ 1988 ierr = PetscMalloc((3*is_n+1)*sizeof(PetscInt),&rows);CHKERRQ(ierr); 1989 sizes = rows + is_n; 1990 1991 /* copy IS values to rows, and sort them */ 1992 for (i=0; i<is_n; i++) { rows[i] = is_idx[i]; } 1993 ierr = PetscSortInt(is_n,rows);CHKERRQ(ierr); 1994 if (baij->keepzeroedrows) { 1995 for (i=0; i<is_n; i++) { sizes[i] = 1; } 1996 bs_max = is_n; 1997 A->same_nonzero = PETSC_TRUE; 1998 } else { 1999 ierr = MatZeroRows_SeqBAIJ_Check_Blocks(rows,is_n,bs,sizes,&bs_max);CHKERRQ(ierr); 2000 A->same_nonzero = PETSC_FALSE; 2001 } 2002 2003 for (i=0,j=0; i<bs_max; j+=sizes[i],i++) { 2004 row = rows[j]; 2005 if (row < 0 || row > A->rmap->N) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"row %D out of range",row); 2006 count = (baij->i[row/bs +1] - baij->i[row/bs])*bs; 2007 aa = ((MatScalar*)(baij->a)) + baij->i[row/bs]*bs2 + (row%bs); 2008 if (sizes[i] == bs && !baij->keepzeroedrows) { 2009 if (diag != 0.0) { 2010 if (baij->ilen[row/bs] > 0) { 2011 baij->ilen[row/bs] = 1; 2012 baij->j[baij->i[row/bs]] = row/bs; 2013 ierr = PetscMemzero(aa,count*bs*sizeof(MatScalar));CHKERRQ(ierr); 2014 } 2015 /* Now insert all the diagonal values for this bs */ 2016 for (k=0; k<bs; k++) { 2017 ierr = (*A->ops->setvalues)(A,1,rows+j+k,1,rows+j+k,&diag,INSERT_VALUES);CHKERRQ(ierr); 2018 } 2019 } else { /* (diag == 0.0) */ 2020 baij->ilen[row/bs] = 0; 2021 } /* end (diag == 0.0) */ 2022 } else { /* (sizes[i] != bs) */ 2023 #if defined (PETSC_USE_DEBUG) 2024 if (sizes[i] != 1) SETERRQ(PETSC_ERR_PLIB,"Internal Error. Value should be 1"); 2025 #endif 2026 for (k=0; k<count; k++) { 2027 aa[0] = zero; 2028 aa += bs; 2029 } 2030 if (diag != 0.0) { 2031 ierr = (*A->ops->setvalues)(A,1,rows+j,1,rows+j,&diag,INSERT_VALUES);CHKERRQ(ierr); 2032 } 2033 } 2034 } 2035 2036 ierr = PetscFree(rows);CHKERRQ(ierr); 2037 ierr = MatAssemblyEnd_SeqBAIJ(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2038 PetscFunctionReturn(0); 2039 } 2040 2041 #undef __FUNCT__ 2042 #define __FUNCT__ "MatSetValues_SeqBAIJ" 2043 PetscErrorCode MatSetValues_SeqBAIJ(Mat A,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode is) 2044 { 2045 Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 2046 PetscInt *rp,k,low,high,t,ii,row,nrow,i,col,l,rmax,N,lastcol = -1; 2047 PetscInt *imax=a->imax,*ai=a->i,*ailen=a->ilen; 2048 PetscInt *aj=a->j,nonew=a->nonew,bs=A->rmap->bs,brow,bcol; 2049 PetscErrorCode ierr; 2050 PetscInt ridx,cidx,bs2=a->bs2; 2051 PetscTruth roworiented=a->roworiented; 2052 MatScalar *ap,value,*aa=a->a,*bap; 2053 2054 PetscFunctionBegin; 2055 for (k=0; k<m; k++) { /* loop over added rows */ 2056 row = im[k]; 2057 brow = row/bs; 2058 if (row < 0) continue; 2059 #if defined(PETSC_USE_DEBUG) 2060 if (row >= A->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",row,A->rmap->N-1); 2061 #endif 2062 rp = aj + ai[brow]; 2063 ap = aa + bs2*ai[brow]; 2064 rmax = imax[brow]; 2065 nrow = ailen[brow]; 2066 low = 0; 2067 high = nrow; 2068 for (l=0; l<n; l++) { /* loop over added columns */ 2069 if (in[l] < 0) continue; 2070 #if defined(PETSC_USE_DEBUG) 2071 if (in[l] >= A->cmap->n) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[l],A->cmap->n-1); 2072 #endif 2073 col = in[l]; bcol = col/bs; 2074 ridx = row % bs; cidx = col % bs; 2075 if (roworiented) { 2076 value = v[l + k*n]; 2077 } else { 2078 value = v[k + l*m]; 2079 } 2080 if (col <= lastcol) low = 0; else high = nrow; 2081 lastcol = col; 2082 while (high-low > 7) { 2083 t = (low+high)/2; 2084 if (rp[t] > bcol) high = t; 2085 else low = t; 2086 } 2087 for (i=low; i<high; i++) { 2088 if (rp[i] > bcol) break; 2089 if (rp[i] == bcol) { 2090 bap = ap + bs2*i + bs*cidx + ridx; 2091 if (is == ADD_VALUES) *bap += value; 2092 else *bap = value; 2093 goto noinsert1; 2094 } 2095 } 2096 if (nonew == 1) goto noinsert1; 2097 if (nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col); 2098 MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 2099 N = nrow++ - 1; high++; 2100 /* shift up all the later entries in this row */ 2101 for (ii=N; ii>=i; ii--) { 2102 rp[ii+1] = rp[ii]; 2103 ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); 2104 } 2105 if (N>=i) { 2106 ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr); 2107 } 2108 rp[i] = bcol; 2109 ap[bs2*i + bs*cidx + ridx] = value; 2110 a->nz++; 2111 noinsert1:; 2112 low = i; 2113 } 2114 ailen[brow] = nrow; 2115 } 2116 A->same_nonzero = PETSC_FALSE; 2117 PetscFunctionReturn(0); 2118 } 2119 2120 EXTERN PetscErrorCode MatSeqBAIJSetNumericFactorization(Mat,PetscTruth); 2121 2122 #undef __FUNCT__ 2123 #define __FUNCT__ "MatILUFactor_SeqBAIJ" 2124 PetscErrorCode MatILUFactor_SeqBAIJ(Mat inA,IS row,IS col,const MatFactorInfo *info) 2125 { 2126 Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)inA->data; 2127 Mat outA; 2128 PetscErrorCode ierr; 2129 PetscTruth row_identity,col_identity; 2130 2131 PetscFunctionBegin; 2132 if (info->levels != 0) SETERRQ(PETSC_ERR_SUP,"Only levels = 0 supported for in-place ILU"); 2133 ierr = ISIdentity(row,&row_identity);CHKERRQ(ierr); 2134 ierr = ISIdentity(col,&col_identity);CHKERRQ(ierr); 2135 if (!row_identity || !col_identity) { 2136 SETERRQ(PETSC_ERR_ARG_WRONG,"Row and column permutations must be identity for in-place ILU"); 2137 } 2138 2139 outA = inA; 2140 inA->factor = MAT_FACTOR_LU; 2141 2142 ierr = MatMarkDiagonal_SeqBAIJ(inA);CHKERRQ(ierr); 2143 2144 ierr = PetscObjectReference((PetscObject)row);CHKERRQ(ierr); 2145 if (a->row) { ierr = ISDestroy(a->row);CHKERRQ(ierr); } 2146 a->row = row; 2147 ierr = PetscObjectReference((PetscObject)col);CHKERRQ(ierr); 2148 if (a->col) { ierr = ISDestroy(a->col);CHKERRQ(ierr); } 2149 a->col = col; 2150 2151 /* Create the invert permutation so that it can be used in MatLUFactorNumeric() */ 2152 ierr = ISInvertPermutation(col,PETSC_DECIDE,&a->icol);CHKERRQ(ierr); 2153 ierr = PetscLogObjectParent(inA,a->icol);CHKERRQ(ierr); 2154 2155 ierr = MatSeqBAIJSetNumericFactorization(inA,(PetscTruth)(row_identity && col_identity));CHKERRQ(ierr); 2156 if (!a->solve_work) { 2157 ierr = PetscMalloc((inA->rmap->N+inA->rmap->bs)*sizeof(PetscScalar),&a->solve_work);CHKERRQ(ierr); 2158 ierr = PetscLogObjectMemory(inA,(inA->rmap->N+inA->rmap->bs)*sizeof(PetscScalar));CHKERRQ(ierr); 2159 } 2160 ierr = MatLUFactorNumeric(outA,inA,info);CHKERRQ(ierr); 2161 2162 PetscFunctionReturn(0); 2163 } 2164 2165 EXTERN_C_BEGIN 2166 #undef __FUNCT__ 2167 #define __FUNCT__ "MatSeqBAIJSetColumnIndices_SeqBAIJ" 2168 PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJSetColumnIndices_SeqBAIJ(Mat mat,PetscInt *indices) 2169 { 2170 Mat_SeqBAIJ *baij = (Mat_SeqBAIJ *)mat->data; 2171 PetscInt i,nz,mbs; 2172 2173 PetscFunctionBegin; 2174 nz = baij->maxnz/baij->bs2; 2175 mbs = baij->mbs; 2176 for (i=0; i<nz; i++) { 2177 baij->j[i] = indices[i]; 2178 } 2179 baij->nz = nz; 2180 for (i=0; i<mbs; i++) { 2181 baij->ilen[i] = baij->imax[i]; 2182 } 2183 PetscFunctionReturn(0); 2184 } 2185 EXTERN_C_END 2186 2187 #undef __FUNCT__ 2188 #define __FUNCT__ "MatSeqBAIJSetColumnIndices" 2189 /*@ 2190 MatSeqBAIJSetColumnIndices - Set the column indices for all the rows 2191 in the matrix. 2192 2193 Input Parameters: 2194 + mat - the SeqBAIJ matrix 2195 - indices - the column indices 2196 2197 Level: advanced 2198 2199 Notes: 2200 This can be called if you have precomputed the nonzero structure of the 2201 matrix and want to provide it to the matrix object to improve the performance 2202 of the MatSetValues() operation. 2203 2204 You MUST have set the correct numbers of nonzeros per row in the call to 2205 MatCreateSeqBAIJ(), and the columns indices MUST be sorted. 2206 2207 MUST be called before any calls to MatSetValues(); 2208 2209 @*/ 2210 PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJSetColumnIndices(Mat mat,PetscInt *indices) 2211 { 2212 PetscErrorCode ierr,(*f)(Mat,PetscInt *); 2213 2214 PetscFunctionBegin; 2215 PetscValidHeaderSpecific(mat,MAT_COOKIE,1); 2216 PetscValidPointer(indices,2); 2217 ierr = PetscObjectQueryFunction((PetscObject)mat,"MatSeqBAIJSetColumnIndices_C",(void (**)(void))&f);CHKERRQ(ierr); 2218 if (f) { 2219 ierr = (*f)(mat,indices);CHKERRQ(ierr); 2220 } else { 2221 SETERRQ(PETSC_ERR_ARG_WRONG,"Wrong type of matrix to set column indices"); 2222 } 2223 PetscFunctionReturn(0); 2224 } 2225 2226 #undef __FUNCT__ 2227 #define __FUNCT__ "MatGetRowMaxAbs_SeqBAIJ" 2228 PetscErrorCode MatGetRowMaxAbs_SeqBAIJ(Mat A,Vec v,PetscInt idx[]) 2229 { 2230 Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 2231 PetscErrorCode ierr; 2232 PetscInt i,j,n,row,bs,*ai,*aj,mbs; 2233 PetscReal atmp; 2234 PetscScalar *x,zero = 0.0; 2235 MatScalar *aa; 2236 PetscInt ncols,brow,krow,kcol; 2237 2238 PetscFunctionBegin; 2239 if (A->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 2240 bs = A->rmap->bs; 2241 aa = a->a; 2242 ai = a->i; 2243 aj = a->j; 2244 mbs = a->mbs; 2245 2246 ierr = VecSet(v,zero);CHKERRQ(ierr); 2247 ierr = VecGetArray(v,&x);CHKERRQ(ierr); 2248 ierr = VecGetLocalSize(v,&n);CHKERRQ(ierr); 2249 if (n != A->rmap->N) SETERRQ(PETSC_ERR_ARG_SIZ,"Nonconforming matrix and vector"); 2250 for (i=0; i<mbs; i++) { 2251 ncols = ai[1] - ai[0]; ai++; 2252 brow = bs*i; 2253 for (j=0; j<ncols; j++){ 2254 for (kcol=0; kcol<bs; kcol++){ 2255 for (krow=0; krow<bs; krow++){ 2256 atmp = PetscAbsScalar(*aa);aa++; 2257 row = brow + krow; /* row index */ 2258 /* printf("val[%d,%d]: %G\n",row,bcol+kcol,atmp); */ 2259 if (PetscAbsScalar(x[row]) < atmp) {x[row] = atmp; if (idx) idx[row] = bs*(*aj) + kcol;} 2260 } 2261 } 2262 aj++; 2263 } 2264 } 2265 ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 2266 PetscFunctionReturn(0); 2267 } 2268 2269 #undef __FUNCT__ 2270 #define __FUNCT__ "MatCopy_SeqBAIJ" 2271 PetscErrorCode MatCopy_SeqBAIJ(Mat A,Mat B,MatStructure str) 2272 { 2273 PetscErrorCode ierr; 2274 2275 PetscFunctionBegin; 2276 /* If the two matrices have the same copy implementation, use fast copy. */ 2277 if (str == SAME_NONZERO_PATTERN && (A->ops->copy == B->ops->copy)) { 2278 Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 2279 Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)B->data; 2280 2281 if (a->i[A->rmap->N] != b->i[B->rmap->N]) { 2282 SETERRQ(PETSC_ERR_ARG_INCOMP,"Number of nonzeros in two matrices are different"); 2283 } 2284 ierr = PetscMemcpy(b->a,a->a,(a->i[A->rmap->N])*sizeof(PetscScalar));CHKERRQ(ierr); 2285 } else { 2286 ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 2287 } 2288 PetscFunctionReturn(0); 2289 } 2290 2291 #undef __FUNCT__ 2292 #define __FUNCT__ "MatSetUpPreallocation_SeqBAIJ" 2293 PetscErrorCode MatSetUpPreallocation_SeqBAIJ(Mat A) 2294 { 2295 PetscErrorCode ierr; 2296 2297 PetscFunctionBegin; 2298 ierr = MatSeqBAIJSetPreallocation_SeqBAIJ(A,-PetscMax(A->rmap->bs,1),PETSC_DEFAULT,0);CHKERRQ(ierr); 2299 PetscFunctionReturn(0); 2300 } 2301 2302 #undef __FUNCT__ 2303 #define __FUNCT__ "MatGetArray_SeqBAIJ" 2304 PetscErrorCode MatGetArray_SeqBAIJ(Mat A,PetscScalar *array[]) 2305 { 2306 Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 2307 PetscFunctionBegin; 2308 *array = a->a; 2309 PetscFunctionReturn(0); 2310 } 2311 2312 #undef __FUNCT__ 2313 #define __FUNCT__ "MatRestoreArray_SeqBAIJ" 2314 PetscErrorCode MatRestoreArray_SeqBAIJ(Mat A,PetscScalar *array[]) 2315 { 2316 PetscFunctionBegin; 2317 PetscFunctionReturn(0); 2318 } 2319 2320 #include "petscblaslapack.h" 2321 #undef __FUNCT__ 2322 #define __FUNCT__ "MatAXPY_SeqBAIJ" 2323 PetscErrorCode MatAXPY_SeqBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 2324 { 2325 Mat_SeqBAIJ *x = (Mat_SeqBAIJ *)X->data,*y = (Mat_SeqBAIJ *)Y->data; 2326 PetscErrorCode ierr; 2327 PetscInt i,bs=Y->rmap->bs,j,bs2; 2328 PetscBLASInt one=1,bnz = PetscBLASIntCast(x->nz); 2329 2330 PetscFunctionBegin; 2331 if (str == SAME_NONZERO_PATTERN) { 2332 PetscScalar alpha = a; 2333 BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one); 2334 } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 2335 if (y->xtoy && y->XtoY != X) { 2336 ierr = PetscFree(y->xtoy);CHKERRQ(ierr); 2337 ierr = MatDestroy(y->XtoY);CHKERRQ(ierr); 2338 } 2339 if (!y->xtoy) { /* get xtoy */ 2340 ierr = MatAXPYGetxtoy_Private(x->mbs,x->i,x->j,PETSC_NULL, y->i,y->j,PETSC_NULL, &y->xtoy);CHKERRQ(ierr); 2341 y->XtoY = X; 2342 ierr = PetscObjectReference((PetscObject)X);CHKERRQ(ierr); 2343 } 2344 bs2 = bs*bs; 2345 for (i=0; i<x->nz; i++) { 2346 j = 0; 2347 while (j < bs2){ 2348 y->a[bs2*y->xtoy[i]+j] += a*(x->a[bs2*i+j]); 2349 j++; 2350 } 2351 } 2352 ierr = PetscInfo3(Y,"ratio of nnz(X)/nnz(Y): %D/%D = %G\n",bs2*x->nz,bs2*y->nz,(PetscReal)(bs2*x->nz)/(bs2*y->nz));CHKERRQ(ierr); 2353 } else { 2354 ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 2355 } 2356 PetscFunctionReturn(0); 2357 } 2358 2359 #undef __FUNCT__ 2360 #define __FUNCT__ "MatRealPart_SeqBAIJ" 2361 PetscErrorCode MatRealPart_SeqBAIJ(Mat A) 2362 { 2363 Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 2364 PetscInt i,nz = a->bs2*a->i[a->mbs]; 2365 MatScalar *aa = a->a; 2366 2367 PetscFunctionBegin; 2368 for (i=0; i<nz; i++) aa[i] = PetscRealPart(aa[i]); 2369 PetscFunctionReturn(0); 2370 } 2371 2372 #undef __FUNCT__ 2373 #define __FUNCT__ "MatImaginaryPart_SeqBAIJ" 2374 PetscErrorCode MatImaginaryPart_SeqBAIJ(Mat A) 2375 { 2376 Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 2377 PetscInt i,nz = a->bs2*a->i[a->mbs]; 2378 MatScalar *aa = a->a; 2379 2380 PetscFunctionBegin; 2381 for (i=0; i<nz; i++) aa[i] = PetscImaginaryPart(aa[i]); 2382 PetscFunctionReturn(0); 2383 } 2384 2385 2386 /* -------------------------------------------------------------------*/ 2387 static struct _MatOps MatOps_Values = {MatSetValues_SeqBAIJ, 2388 MatGetRow_SeqBAIJ, 2389 MatRestoreRow_SeqBAIJ, 2390 MatMult_SeqBAIJ_N, 2391 /* 4*/ MatMultAdd_SeqBAIJ_N, 2392 MatMultTranspose_SeqBAIJ, 2393 MatMultTransposeAdd_SeqBAIJ, 2394 0, 2395 0, 2396 0, 2397 /*10*/ 0, 2398 MatLUFactor_SeqBAIJ, 2399 0, 2400 0, 2401 MatTranspose_SeqBAIJ, 2402 /*15*/ MatGetInfo_SeqBAIJ, 2403 MatEqual_SeqBAIJ, 2404 MatGetDiagonal_SeqBAIJ, 2405 MatDiagonalScale_SeqBAIJ, 2406 MatNorm_SeqBAIJ, 2407 /*20*/ 0, 2408 MatAssemblyEnd_SeqBAIJ, 2409 MatSetOption_SeqBAIJ, 2410 MatZeroEntries_SeqBAIJ, 2411 /*24*/ MatZeroRows_SeqBAIJ, 2412 0, 2413 0, 2414 0, 2415 0, 2416 /*29*/ MatSetUpPreallocation_SeqBAIJ, 2417 0, 2418 0, 2419 MatGetArray_SeqBAIJ, 2420 MatRestoreArray_SeqBAIJ, 2421 /*34*/ MatDuplicate_SeqBAIJ, 2422 0, 2423 0, 2424 MatILUFactor_SeqBAIJ, 2425 0, 2426 /*39*/ MatAXPY_SeqBAIJ, 2427 MatGetSubMatrices_SeqBAIJ, 2428 MatIncreaseOverlap_SeqBAIJ, 2429 MatGetValues_SeqBAIJ, 2430 MatCopy_SeqBAIJ, 2431 /*44*/ 0, 2432 MatScale_SeqBAIJ, 2433 0, 2434 0, 2435 0, 2436 /*49*/ 0, 2437 MatGetRowIJ_SeqBAIJ, 2438 MatRestoreRowIJ_SeqBAIJ, 2439 0, 2440 0, 2441 /*54*/ 0, 2442 0, 2443 0, 2444 0, 2445 MatSetValuesBlocked_SeqBAIJ, 2446 /*59*/ MatGetSubMatrix_SeqBAIJ, 2447 MatDestroy_SeqBAIJ, 2448 MatView_SeqBAIJ, 2449 0, 2450 0, 2451 /*64*/ 0, 2452 0, 2453 0, 2454 0, 2455 0, 2456 /*69*/ MatGetRowMaxAbs_SeqBAIJ, 2457 0, 2458 MatConvert_Basic, 2459 0, 2460 0, 2461 /*74*/ 0, 2462 0, 2463 0, 2464 0, 2465 0, 2466 /*79*/ 0, 2467 0, 2468 0, 2469 0, 2470 MatLoad_SeqBAIJ, 2471 /*84*/ 0, 2472 0, 2473 0, 2474 0, 2475 0, 2476 /*89*/ 0, 2477 0, 2478 0, 2479 0, 2480 0, 2481 /*94*/ 0, 2482 0, 2483 0, 2484 0, 2485 0, 2486 /*99*/0, 2487 0, 2488 0, 2489 0, 2490 0, 2491 /*104*/0, 2492 MatRealPart_SeqBAIJ, 2493 MatImaginaryPart_SeqBAIJ, 2494 0, 2495 0, 2496 /*109*/0, 2497 0, 2498 0, 2499 0, 2500 MatMissingDiagonal_SeqBAIJ 2501 /*114*/ 2502 }; 2503 2504 EXTERN_C_BEGIN 2505 #undef __FUNCT__ 2506 #define __FUNCT__ "MatStoreValues_SeqBAIJ" 2507 PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_SeqBAIJ(Mat mat) 2508 { 2509 Mat_SeqBAIJ *aij = (Mat_SeqBAIJ *)mat->data; 2510 PetscInt nz = aij->i[mat->rmap->N]*mat->rmap->bs*aij->bs2; 2511 PetscErrorCode ierr; 2512 2513 PetscFunctionBegin; 2514 if (aij->nonew != 1) { 2515 SETERRQ(PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first"); 2516 } 2517 2518 /* allocate space for values if not already there */ 2519 if (!aij->saved_values) { 2520 ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&aij->saved_values);CHKERRQ(ierr); 2521 } 2522 2523 /* copy values over */ 2524 ierr = PetscMemcpy(aij->saved_values,aij->a,nz*sizeof(PetscScalar));CHKERRQ(ierr); 2525 PetscFunctionReturn(0); 2526 } 2527 EXTERN_C_END 2528 2529 EXTERN_C_BEGIN 2530 #undef __FUNCT__ 2531 #define __FUNCT__ "MatRetrieveValues_SeqBAIJ" 2532 PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_SeqBAIJ(Mat mat) 2533 { 2534 Mat_SeqBAIJ *aij = (Mat_SeqBAIJ *)mat->data; 2535 PetscErrorCode ierr; 2536 PetscInt nz = aij->i[mat->rmap->N]*mat->rmap->bs*aij->bs2; 2537 2538 PetscFunctionBegin; 2539 if (aij->nonew != 1) { 2540 SETERRQ(PETSC_ERR_ORDER,"Must call MatSetOption(A,MAT_NEW_NONZERO_LOCATIONS,PETSC_FALSE);first"); 2541 } 2542 if (!aij->saved_values) { 2543 SETERRQ(PETSC_ERR_ORDER,"Must call MatStoreValues(A);first"); 2544 } 2545 2546 /* copy values over */ 2547 ierr = PetscMemcpy(aij->a,aij->saved_values,nz*sizeof(PetscScalar));CHKERRQ(ierr); 2548 PetscFunctionReturn(0); 2549 } 2550 EXTERN_C_END 2551 2552 EXTERN_C_BEGIN 2553 extern PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_SeqBAIJ_SeqAIJ(Mat, MatType,MatReuse,Mat*); 2554 extern PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_SeqBAIJ_SeqSBAIJ(Mat, MatType,MatReuse,Mat*); 2555 EXTERN_C_END 2556 2557 EXTERN_C_BEGIN 2558 #undef __FUNCT__ 2559 #define __FUNCT__ "MatSeqBAIJSetPreallocation_SeqBAIJ" 2560 PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJSetPreallocation_SeqBAIJ(Mat B,PetscInt bs,PetscInt nz,PetscInt *nnz) 2561 { 2562 Mat_SeqBAIJ *b; 2563 PetscErrorCode ierr; 2564 PetscInt i,mbs,nbs,bs2,newbs = PetscAbs(bs); 2565 PetscTruth flg,skipallocation = PETSC_FALSE; 2566 2567 PetscFunctionBegin; 2568 2569 if (nz == MAT_SKIP_ALLOCATION) { 2570 skipallocation = PETSC_TRUE; 2571 nz = 0; 2572 } 2573 2574 if (bs < 0) { 2575 ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Block options for SEQBAIJ matrix 1","Mat");CHKERRQ(ierr); 2576 ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatSeqBAIJSetPreallocation",newbs,&newbs,PETSC_NULL);CHKERRQ(ierr); 2577 ierr = PetscOptionsEnd();CHKERRQ(ierr); 2578 bs = PetscAbs(bs); 2579 } 2580 if (nnz && newbs != bs) { 2581 SETERRQ(PETSC_ERR_ARG_WRONG,"Cannot change blocksize from command line if setting nnz"); 2582 } 2583 bs = newbs; 2584 2585 ierr = PetscMapSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 2586 ierr = PetscMapSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 2587 ierr = PetscMapSetUp(B->rmap);CHKERRQ(ierr); 2588 ierr = PetscMapSetUp(B->cmap);CHKERRQ(ierr); 2589 2590 B->preallocated = PETSC_TRUE; 2591 2592 mbs = B->rmap->n/bs; 2593 nbs = B->cmap->n/bs; 2594 bs2 = bs*bs; 2595 2596 if (mbs*bs!=B->rmap->n || nbs*bs!=B->cmap->n) { 2597 SETERRQ3(PETSC_ERR_ARG_SIZ,"Number rows %D, cols %D must be divisible by blocksize %D",B->rmap->N,B->cmap->n,bs); 2598 } 2599 2600 if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 5; 2601 if (nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"nz cannot be less than 0: value %D",nz); 2602 if (nnz) { 2603 for (i=0; i<mbs; i++) { 2604 if (nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"nnz cannot be less than 0: local row %D value %D",i,nnz[i]); 2605 if (nnz[i] > nbs) SETERRQ3(PETSC_ERR_ARG_OUTOFRANGE,"nnz cannot be greater than block row length: local row %D value %D rowlength %D",i,nnz[i],nbs); 2606 } 2607 } 2608 2609 b = (Mat_SeqBAIJ*)B->data; 2610 ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Optimize options for SEQBAIJ matrix 2 ","Mat");CHKERRQ(ierr); 2611 ierr = PetscOptionsTruth("-mat_no_unroll","Do not optimize for block size (slow)",PETSC_NULL,PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr); 2612 ierr = PetscOptionsEnd();CHKERRQ(ierr); 2613 2614 if (!flg) { 2615 switch (bs) { 2616 case 1: 2617 B->ops->mult = MatMult_SeqBAIJ_1; 2618 B->ops->multadd = MatMultAdd_SeqBAIJ_1; 2619 B->ops->pbrelax = MatPBRelax_SeqBAIJ_1; 2620 break; 2621 case 2: 2622 B->ops->mult = MatMult_SeqBAIJ_2; 2623 B->ops->multadd = MatMultAdd_SeqBAIJ_2; 2624 B->ops->pbrelax = MatPBRelax_SeqBAIJ_2; 2625 break; 2626 case 3: 2627 B->ops->mult = MatMult_SeqBAIJ_3; 2628 B->ops->multadd = MatMultAdd_SeqBAIJ_3; 2629 B->ops->pbrelax = MatPBRelax_SeqBAIJ_3; 2630 break; 2631 case 4: 2632 B->ops->mult = MatMult_SeqBAIJ_4; 2633 B->ops->multadd = MatMultAdd_SeqBAIJ_4; 2634 B->ops->pbrelax = MatPBRelax_SeqBAIJ_4; 2635 break; 2636 case 5: 2637 B->ops->mult = MatMult_SeqBAIJ_5; 2638 B->ops->multadd = MatMultAdd_SeqBAIJ_5; 2639 B->ops->pbrelax = MatPBRelax_SeqBAIJ_5; 2640 break; 2641 case 6: 2642 B->ops->mult = MatMult_SeqBAIJ_6; 2643 B->ops->multadd = MatMultAdd_SeqBAIJ_6; 2644 B->ops->pbrelax = MatPBRelax_SeqBAIJ_6; 2645 break; 2646 case 7: 2647 B->ops->mult = MatMult_SeqBAIJ_7; 2648 B->ops->multadd = MatMultAdd_SeqBAIJ_7; 2649 B->ops->pbrelax = MatPBRelax_SeqBAIJ_7; 2650 break; 2651 default: 2652 B->ops->mult = MatMult_SeqBAIJ_N; 2653 B->ops->multadd = MatMultAdd_SeqBAIJ_N; 2654 break; 2655 } 2656 } 2657 B->rmap->bs = bs; 2658 b->mbs = mbs; 2659 b->nbs = nbs; 2660 if (!skipallocation) { 2661 if (!b->imax) { 2662 ierr = PetscMalloc2(mbs,PetscInt,&b->imax,mbs,PetscInt,&b->ilen);CHKERRQ(ierr); 2663 } 2664 /* b->ilen will count nonzeros in each block row so far. */ 2665 for (i=0; i<mbs; i++) { b->ilen[i] = 0;} 2666 if (!nnz) { 2667 if (nz == PETSC_DEFAULT || nz == PETSC_DECIDE) nz = 5; 2668 else if (nz <= 0) nz = 1; 2669 for (i=0; i<mbs; i++) b->imax[i] = nz; 2670 nz = nz*mbs; 2671 } else { 2672 nz = 0; 2673 for (i=0; i<mbs; i++) {b->imax[i] = nnz[i]; nz += nnz[i];} 2674 } 2675 2676 /* allocate the matrix space */ 2677 ierr = MatSeqXAIJFreeAIJ(B,&b->a,&b->j,&b->i);CHKERRQ(ierr); 2678 ierr = PetscMalloc3(bs2*nz,PetscScalar,&b->a,nz,PetscInt,&b->j,B->rmap->N+1,PetscInt,&b->i);CHKERRQ(ierr); 2679 ierr = PetscLogObjectMemory(B,(B->rmap->N+1)*sizeof(PetscInt)+nz*(bs2*sizeof(PetscScalar)+sizeof(PetscInt)));CHKERRQ(ierr); 2680 ierr = PetscMemzero(b->a,nz*bs2*sizeof(MatScalar));CHKERRQ(ierr); 2681 ierr = PetscMemzero(b->j,nz*sizeof(PetscInt));CHKERRQ(ierr); 2682 b->singlemalloc = PETSC_TRUE; 2683 b->i[0] = 0; 2684 for (i=1; i<mbs+1; i++) { 2685 b->i[i] = b->i[i-1] + b->imax[i-1]; 2686 } 2687 b->free_a = PETSC_TRUE; 2688 b->free_ij = PETSC_TRUE; 2689 } else { 2690 b->free_a = PETSC_FALSE; 2691 b->free_ij = PETSC_FALSE; 2692 } 2693 2694 B->rmap->bs = bs; 2695 b->bs2 = bs2; 2696 b->mbs = mbs; 2697 b->nz = 0; 2698 b->maxnz = nz*bs2; 2699 B->info.nz_unneeded = (PetscReal)b->maxnz; 2700 PetscFunctionReturn(0); 2701 } 2702 EXTERN_C_END 2703 2704 EXTERN_C_BEGIN 2705 #undef __FUNCT__ 2706 #define __FUNCT__ "MatSeqBAIJSetPreallocationCSR_SeqBAIJ" 2707 PetscErrorCode MatSeqBAIJSetPreallocationCSR_SeqBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 2708 { 2709 PetscInt i,m,nz,nz_max=0,*nnz; 2710 PetscScalar *values=0; 2711 PetscErrorCode ierr; 2712 2713 PetscFunctionBegin; 2714 2715 if (bs < 1) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs); 2716 2717 ierr = PetscMapSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 2718 ierr = PetscMapSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 2719 ierr = PetscMapSetUp(B->rmap);CHKERRQ(ierr); 2720 ierr = PetscMapSetUp(B->cmap);CHKERRQ(ierr); 2721 m = B->rmap->n/bs; 2722 2723 if (ii[0] != 0) { SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %D",ii[0]); } 2724 ierr = PetscMalloc((m+1) * sizeof(PetscInt), &nnz);CHKERRQ(ierr); 2725 for(i=0; i<m; i++) { 2726 nz = ii[i+1]- ii[i]; 2727 if (nz < 0) { SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE, "Local row %D has a negative number of columns %D",i,nz); } 2728 nz_max = PetscMax(nz_max, nz); 2729 nnz[i] = nz; 2730 } 2731 ierr = MatSeqBAIJSetPreallocation(B,bs,0,nnz);CHKERRQ(ierr); 2732 ierr = PetscFree(nnz);CHKERRQ(ierr); 2733 2734 values = (PetscScalar*)V; 2735 if (!values) { 2736 ierr = PetscMalloc(bs*bs*(nz_max+1)*sizeof(PetscScalar),&values);CHKERRQ(ierr); 2737 ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr); 2738 } 2739 for (i=0; i<m; i++) { 2740 PetscInt ncols = ii[i+1] - ii[i]; 2741 const PetscInt *icols = jj + ii[i]; 2742 const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 2743 ierr = MatSetValuesBlocked_SeqBAIJ(B,1,&i,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 2744 } 2745 if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 2746 ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2747 ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2748 2749 PetscFunctionReturn(0); 2750 } 2751 EXTERN_C_END 2752 2753 2754 EXTERN_C_BEGIN 2755 extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactor_seqbaij_petsc(Mat,MatFactorType,Mat*); 2756 extern PetscErrorCode PETSCMAT_DLLEXPORT MatGetFactorAvailable_seqbaij_petsc(Mat,MatFactorType,Mat*); 2757 EXTERN_C_END 2758 2759 /*MC 2760 MATSEQBAIJ - MATSEQBAIJ = "seqbaij" - A matrix type to be used for sequential block sparse matrices, based on 2761 block sparse compressed row format. 2762 2763 Options Database Keys: 2764 . -mat_type seqbaij - sets the matrix type to "seqbaij" during a call to MatSetFromOptions() 2765 2766 Level: beginner 2767 2768 .seealso: MatCreateSeqBAIJ() 2769 M*/ 2770 2771 2772 EXTERN_C_BEGIN 2773 #undef __FUNCT__ 2774 #define __FUNCT__ "MatCreate_SeqBAIJ" 2775 PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_SeqBAIJ(Mat B) 2776 { 2777 PetscErrorCode ierr; 2778 PetscMPIInt size; 2779 Mat_SeqBAIJ *b; 2780 2781 PetscFunctionBegin; 2782 ierr = MPI_Comm_size(((PetscObject)B)->comm,&size);CHKERRQ(ierr); 2783 if (size > 1) SETERRQ(PETSC_ERR_ARG_WRONG,"Comm must be of size 1"); 2784 2785 ierr = PetscNewLog(B,Mat_SeqBAIJ,&b);CHKERRQ(ierr); 2786 B->data = (void*)b; 2787 ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 2788 B->mapping = 0; 2789 b->row = 0; 2790 b->col = 0; 2791 b->icol = 0; 2792 b->reallocs = 0; 2793 b->saved_values = 0; 2794 2795 b->roworiented = PETSC_TRUE; 2796 b->nonew = 0; 2797 b->diag = 0; 2798 b->solve_work = 0; 2799 b->mult_work = 0; 2800 B->spptr = 0; 2801 B->info.nz_unneeded = (PetscReal)b->maxnz; 2802 b->keepzeroedrows = PETSC_FALSE; 2803 b->xtoy = 0; 2804 b->XtoY = 0; 2805 b->compressedrow.use = PETSC_FALSE; 2806 b->compressedrow.nrows = 0; 2807 b->compressedrow.i = PETSC_NULL; 2808 b->compressedrow.rindex = PETSC_NULL; 2809 b->compressedrow.checked = PETSC_FALSE; 2810 B->same_nonzero = PETSC_FALSE; 2811 2812 ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactorAvailable_seqbaij_petsc_C", 2813 "MatGetFactorAvailable_seqbaij_petsc", 2814 MatGetFactorAvailable_seqbaij_petsc);CHKERRQ(ierr); 2815 ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_seqbaij_petsc_C", 2816 "MatGetFactor_seqbaij_petsc", 2817 MatGetFactor_seqbaij_petsc);CHKERRQ(ierr); 2818 ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSeqBAIJInvertBlockDiagonal_C", 2819 "MatInvertBlockDiagonal_SeqBAIJ", 2820 MatInvertBlockDiagonal_SeqBAIJ);CHKERRQ(ierr); 2821 ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 2822 "MatStoreValues_SeqBAIJ", 2823 MatStoreValues_SeqBAIJ);CHKERRQ(ierr); 2824 ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 2825 "MatRetrieveValues_SeqBAIJ", 2826 MatRetrieveValues_SeqBAIJ);CHKERRQ(ierr); 2827 ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSeqBAIJSetColumnIndices_C", 2828 "MatSeqBAIJSetColumnIndices_SeqBAIJ", 2829 MatSeqBAIJSetColumnIndices_SeqBAIJ);CHKERRQ(ierr); 2830 ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_seqbaij_seqaij_C", 2831 "MatConvert_SeqBAIJ_SeqAIJ", 2832 MatConvert_SeqBAIJ_SeqAIJ);CHKERRQ(ierr); 2833 ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_seqbaij_seqsbaij_C", 2834 "MatConvert_SeqBAIJ_SeqSBAIJ", 2835 MatConvert_SeqBAIJ_SeqSBAIJ);CHKERRQ(ierr); 2836 ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSeqBAIJSetPreallocation_C", 2837 "MatSeqBAIJSetPreallocation_SeqBAIJ", 2838 MatSeqBAIJSetPreallocation_SeqBAIJ);CHKERRQ(ierr); 2839 ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSeqBAIJSetPreallocationCSR_C", 2840 "MatSeqBAIJSetPreallocationCSR_SeqBAIJ", 2841 MatSeqBAIJSetPreallocationCSR_SeqBAIJ);CHKERRQ(ierr); 2842 ierr = PetscObjectChangeTypeName((PetscObject)B,MATSEQBAIJ);CHKERRQ(ierr); 2843 PetscFunctionReturn(0); 2844 } 2845 EXTERN_C_END 2846 2847 #undef __FUNCT__ 2848 #define __FUNCT__ "MatDuplicateNoCreate_SeqBAIJ" 2849 PetscErrorCode MatDuplicateNoCreate_SeqBAIJ(Mat C,Mat A,MatDuplicateOption cpvalues) 2850 { 2851 Mat_SeqBAIJ *c = (Mat_SeqBAIJ*)C->data,*a = (Mat_SeqBAIJ*)A->data; 2852 PetscErrorCode ierr; 2853 PetscInt i,mbs = a->mbs,nz = a->nz,bs2 = a->bs2; 2854 2855 PetscFunctionBegin; 2856 if (a->i[mbs] != nz) SETERRQ(PETSC_ERR_PLIB,"Corrupt matrix"); 2857 2858 ierr = PetscMalloc2(mbs,PetscInt,&c->imax,mbs,PetscInt,&c->ilen);CHKERRQ(ierr); 2859 for (i=0; i<mbs; i++) { 2860 c->imax[i] = a->imax[i]; 2861 c->ilen[i] = a->ilen[i]; 2862 } 2863 2864 /* allocate the matrix space */ 2865 ierr = PetscMalloc3(bs2*nz,PetscScalar,&c->a,nz,PetscInt,&c->j,mbs+1,PetscInt,&c->i);CHKERRQ(ierr); 2866 c->singlemalloc = PETSC_TRUE; 2867 ierr = PetscMemcpy(c->i,a->i,(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr); 2868 if (mbs > 0) { 2869 ierr = PetscMemcpy(c->j,a->j,nz*sizeof(PetscInt));CHKERRQ(ierr); 2870 if (cpvalues == MAT_COPY_VALUES) { 2871 ierr = PetscMemcpy(c->a,a->a,bs2*nz*sizeof(MatScalar));CHKERRQ(ierr); 2872 } else { 2873 ierr = PetscMemzero(c->a,bs2*nz*sizeof(MatScalar));CHKERRQ(ierr); 2874 } 2875 } 2876 c->roworiented = a->roworiented; 2877 c->nonew = a->nonew; 2878 ierr = PetscMapCopy(((PetscObject)A)->comm,A->rmap,C->rmap);CHKERRQ(ierr); 2879 ierr = PetscMapCopy(((PetscObject)A)->comm,A->cmap,C->cmap);CHKERRQ(ierr); 2880 c->bs2 = a->bs2; 2881 c->mbs = a->mbs; 2882 c->nbs = a->nbs; 2883 2884 if (a->diag) { 2885 ierr = PetscMalloc((mbs+1)*sizeof(PetscInt),&c->diag);CHKERRQ(ierr); 2886 ierr = PetscLogObjectMemory(C,(mbs+1)*sizeof(PetscInt));CHKERRQ(ierr); 2887 for (i=0; i<mbs; i++) { 2888 c->diag[i] = a->diag[i]; 2889 } 2890 } else c->diag = 0; 2891 c->nz = a->nz; 2892 c->maxnz = a->maxnz; 2893 c->solve_work = 0; 2894 c->mult_work = 0; 2895 c->free_a = PETSC_TRUE; 2896 c->free_ij = PETSC_TRUE; 2897 C->preallocated = PETSC_TRUE; 2898 C->assembled = PETSC_TRUE; 2899 2900 c->compressedrow.use = a->compressedrow.use; 2901 c->compressedrow.nrows = a->compressedrow.nrows; 2902 c->compressedrow.checked = a->compressedrow.checked; 2903 if ( a->compressedrow.checked && a->compressedrow.use){ 2904 i = a->compressedrow.nrows; 2905 ierr = PetscMalloc((2*i+1)*sizeof(PetscInt),&c->compressedrow.i);CHKERRQ(ierr); 2906 c->compressedrow.rindex = c->compressedrow.i + i + 1; 2907 ierr = PetscMemcpy(c->compressedrow.i,a->compressedrow.i,(i+1)*sizeof(PetscInt));CHKERRQ(ierr); 2908 ierr = PetscMemcpy(c->compressedrow.rindex,a->compressedrow.rindex,i*sizeof(PetscInt));CHKERRQ(ierr); 2909 } else { 2910 c->compressedrow.use = PETSC_FALSE; 2911 c->compressedrow.i = PETSC_NULL; 2912 c->compressedrow.rindex = PETSC_NULL; 2913 } 2914 C->same_nonzero = A->same_nonzero; 2915 ierr = PetscFListDuplicate(((PetscObject)A)->qlist,&((PetscObject)C)->qlist);CHKERRQ(ierr); 2916 PetscFunctionReturn(0); 2917 } 2918 2919 #undef __FUNCT__ 2920 #define __FUNCT__ "MatDuplicate_SeqBAIJ" 2921 PetscErrorCode MatDuplicate_SeqBAIJ(Mat A,MatDuplicateOption cpvalues,Mat *B) 2922 { 2923 PetscErrorCode ierr; 2924 2925 PetscFunctionBegin; 2926 ierr = MatCreate(((PetscObject)A)->comm,B);CHKERRQ(ierr); 2927 ierr = MatSetSizes(*B,A->rmap->N,A->cmap->n,A->rmap->N,A->cmap->n);CHKERRQ(ierr); 2928 ierr = MatSetType(*B,MATSEQBAIJ);CHKERRQ(ierr); 2929 ierr = MatDuplicateNoCreate_SeqBAIJ(*B,A,cpvalues); 2930 PetscFunctionReturn(0); 2931 } 2932 2933 #undef __FUNCT__ 2934 #define __FUNCT__ "MatLoad_SeqBAIJ" 2935 PetscErrorCode MatLoad_SeqBAIJ(PetscViewer viewer, const MatType type,Mat *A) 2936 { 2937 Mat_SeqBAIJ *a; 2938 Mat B; 2939 PetscErrorCode ierr; 2940 PetscInt i,nz,header[4],*rowlengths=0,M,N,bs=1; 2941 PetscInt *mask,mbs,*jj,j,rowcount,nzcount,k,*browlengths,maskcount; 2942 PetscInt kmax,jcount,block,idx,point,nzcountb,extra_rows; 2943 PetscInt *masked,nmask,tmp,bs2,ishift; 2944 PetscMPIInt size; 2945 int fd; 2946 PetscScalar *aa; 2947 MPI_Comm comm = ((PetscObject)viewer)->comm; 2948 2949 PetscFunctionBegin; 2950 ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading SEQBAIJ matrix","Mat");CHKERRQ(ierr); 2951 ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr); 2952 ierr = PetscOptionsEnd();CHKERRQ(ierr); 2953 bs2 = bs*bs; 2954 2955 ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2956 if (size > 1) SETERRQ(PETSC_ERR_ARG_WRONG,"view must have one processor"); 2957 ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2958 ierr = PetscBinaryRead(fd,header,4,PETSC_INT);CHKERRQ(ierr); 2959 if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not Mat object"); 2960 M = header[1]; N = header[2]; nz = header[3]; 2961 2962 if (header[3] < 0) { 2963 SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as SeqBAIJ"); 2964 } 2965 2966 if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 2967 2968 /* 2969 This code adds extra rows to make sure the number of rows is 2970 divisible by the blocksize 2971 */ 2972 mbs = M/bs; 2973 extra_rows = bs - M + bs*(mbs); 2974 if (extra_rows == bs) extra_rows = 0; 2975 else mbs++; 2976 if (extra_rows) { 2977 ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 2978 } 2979 2980 /* read in row lengths */ 2981 ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 2982 ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 2983 for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 2984 2985 /* read in column indices */ 2986 ierr = PetscMalloc((nz+extra_rows)*sizeof(PetscInt),&jj);CHKERRQ(ierr); 2987 ierr = PetscBinaryRead(fd,jj,nz,PETSC_INT);CHKERRQ(ierr); 2988 for (i=0; i<extra_rows; i++) jj[nz+i] = M+i; 2989 2990 /* loop over row lengths determining block row lengths */ 2991 ierr = PetscMalloc(mbs*sizeof(PetscInt),&browlengths);CHKERRQ(ierr); 2992 ierr = PetscMemzero(browlengths,mbs*sizeof(PetscInt));CHKERRQ(ierr); 2993 ierr = PetscMalloc(2*mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr); 2994 ierr = PetscMemzero(mask,mbs*sizeof(PetscInt));CHKERRQ(ierr); 2995 masked = mask + mbs; 2996 rowcount = 0; nzcount = 0; 2997 for (i=0; i<mbs; i++) { 2998 nmask = 0; 2999 for (j=0; j<bs; j++) { 3000 kmax = rowlengths[rowcount]; 3001 for (k=0; k<kmax; k++) { 3002 tmp = jj[nzcount++]/bs; 3003 if (!mask[tmp]) {masked[nmask++] = tmp; mask[tmp] = 1;} 3004 } 3005 rowcount++; 3006 } 3007 browlengths[i] += nmask; 3008 /* zero out the mask elements we set */ 3009 for (j=0; j<nmask; j++) mask[masked[j]] = 0; 3010 } 3011 3012 /* create our matrix */ 3013 ierr = MatCreate(comm,&B); 3014 ierr = MatSetSizes(B,PETSC_DECIDE,PETSC_DECIDE,M+extra_rows,N+extra_rows); 3015 ierr = MatSetType(B,type);CHKERRQ(ierr); 3016 ierr = MatSeqBAIJSetPreallocation_SeqBAIJ(B,bs,0,browlengths);CHKERRQ(ierr); 3017 a = (Mat_SeqBAIJ*)B->data; 3018 3019 /* set matrix "i" values */ 3020 a->i[0] = 0; 3021 for (i=1; i<= mbs; i++) { 3022 a->i[i] = a->i[i-1] + browlengths[i-1]; 3023 a->ilen[i-1] = browlengths[i-1]; 3024 } 3025 a->nz = 0; 3026 for (i=0; i<mbs; i++) a->nz += browlengths[i]; 3027 3028 /* read in nonzero values */ 3029 ierr = PetscMalloc((nz+extra_rows)*sizeof(PetscScalar),&aa);CHKERRQ(ierr); 3030 ierr = PetscBinaryRead(fd,aa,nz,PETSC_SCALAR);CHKERRQ(ierr); 3031 for (i=0; i<extra_rows; i++) aa[nz+i] = 1.0; 3032 3033 /* set "a" and "j" values into matrix */ 3034 nzcount = 0; jcount = 0; 3035 for (i=0; i<mbs; i++) { 3036 nzcountb = nzcount; 3037 nmask = 0; 3038 for (j=0; j<bs; j++) { 3039 kmax = rowlengths[i*bs+j]; 3040 for (k=0; k<kmax; k++) { 3041 tmp = jj[nzcount++]/bs; 3042 if (!mask[tmp]) { masked[nmask++] = tmp; mask[tmp] = 1;} 3043 } 3044 } 3045 /* sort the masked values */ 3046 ierr = PetscSortInt(nmask,masked);CHKERRQ(ierr); 3047 3048 /* set "j" values into matrix */ 3049 maskcount = 1; 3050 for (j=0; j<nmask; j++) { 3051 a->j[jcount++] = masked[j]; 3052 mask[masked[j]] = maskcount++; 3053 } 3054 /* set "a" values into matrix */ 3055 ishift = bs2*a->i[i]; 3056 for (j=0; j<bs; j++) { 3057 kmax = rowlengths[i*bs+j]; 3058 for (k=0; k<kmax; k++) { 3059 tmp = jj[nzcountb]/bs ; 3060 block = mask[tmp] - 1; 3061 point = jj[nzcountb] - bs*tmp; 3062 idx = ishift + bs2*block + j + bs*point; 3063 a->a[idx] = (MatScalar)aa[nzcountb++]; 3064 } 3065 } 3066 /* zero out the mask elements we set */ 3067 for (j=0; j<nmask; j++) mask[masked[j]] = 0; 3068 } 3069 if (jcount != a->nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Bad binary matrix"); 3070 3071 ierr = PetscFree(rowlengths);CHKERRQ(ierr); 3072 ierr = PetscFree(browlengths);CHKERRQ(ierr); 3073 ierr = PetscFree(aa);CHKERRQ(ierr); 3074 ierr = PetscFree(jj);CHKERRQ(ierr); 3075 ierr = PetscFree(mask);CHKERRQ(ierr); 3076 3077 ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 3078 ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 3079 ierr = MatView_Private(B);CHKERRQ(ierr); 3080 3081 *A = B; 3082 PetscFunctionReturn(0); 3083 } 3084 3085 #undef __FUNCT__ 3086 #define __FUNCT__ "MatCreateSeqBAIJ" 3087 /*@C 3088 MatCreateSeqBAIJ - Creates a sparse matrix in block AIJ (block 3089 compressed row) format. For good matrix assembly performance the 3090 user should preallocate the matrix storage by setting the parameter nz 3091 (or the array nnz). By setting these parameters accurately, performance 3092 during matrix assembly can be increased by more than a factor of 50. 3093 3094 Collective on MPI_Comm 3095 3096 Input Parameters: 3097 + comm - MPI communicator, set to PETSC_COMM_SELF 3098 . bs - size of block 3099 . m - number of rows 3100 . n - number of columns 3101 . nz - number of nonzero blocks per block row (same for all rows) 3102 - nnz - array containing the number of nonzero blocks in the various block rows 3103 (possibly different for each block row) or PETSC_NULL 3104 3105 Output Parameter: 3106 . A - the matrix 3107 3108 It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 3109 MatXXXXSetPreallocation() paradgm instead of this routine directly. 3110 [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 3111 3112 Options Database Keys: 3113 . -mat_no_unroll - uses code that does not unroll the loops in the 3114 block calculations (much slower) 3115 . -mat_block_size - size of the blocks to use 3116 3117 Level: intermediate 3118 3119 Notes: 3120 The number of rows and columns must be divisible by blocksize. 3121 3122 If the nnz parameter is given then the nz parameter is ignored 3123 3124 A nonzero block is any block that as 1 or more nonzeros in it 3125 3126 The block AIJ format is fully compatible with standard Fortran 77 3127 storage. That is, the stored row and column indices can begin at 3128 either one (as in Fortran) or zero. See the users' manual for details. 3129 3130 Specify the preallocated storage with either nz or nnz (not both). 3131 Set nz=PETSC_DEFAULT and nnz=PETSC_NULL for PETSc to control dynamic memory 3132 allocation. For additional details, see the users manual chapter on 3133 matrices. 3134 3135 .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatCreateMPIBAIJ() 3136 @*/ 3137 PetscErrorCode PETSCMAT_DLLEXPORT MatCreateSeqBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt nz,const PetscInt nnz[],Mat *A) 3138 { 3139 PetscErrorCode ierr; 3140 3141 PetscFunctionBegin; 3142 ierr = MatCreate(comm,A);CHKERRQ(ierr); 3143 ierr = MatSetSizes(*A,m,n,m,n);CHKERRQ(ierr); 3144 ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr); 3145 ierr = MatSeqBAIJSetPreallocation_SeqBAIJ(*A,bs,nz,(PetscInt*)nnz);CHKERRQ(ierr); 3146 PetscFunctionReturn(0); 3147 } 3148 3149 #undef __FUNCT__ 3150 #define __FUNCT__ "MatSeqBAIJSetPreallocation" 3151 /*@C 3152 MatSeqBAIJSetPreallocation - Sets the block size and expected nonzeros 3153 per row in the matrix. For good matrix assembly performance the 3154 user should preallocate the matrix storage by setting the parameter nz 3155 (or the array nnz). By setting these parameters accurately, performance 3156 during matrix assembly can be increased by more than a factor of 50. 3157 3158 Collective on MPI_Comm 3159 3160 Input Parameters: 3161 + A - the matrix 3162 . bs - size of block 3163 . nz - number of block nonzeros per block row (same for all rows) 3164 - nnz - array containing the number of block nonzeros in the various block rows 3165 (possibly different for each block row) or PETSC_NULL 3166 3167 Options Database Keys: 3168 . -mat_no_unroll - uses code that does not unroll the loops in the 3169 block calculations (much slower) 3170 . -mat_block_size - size of the blocks to use 3171 3172 Level: intermediate 3173 3174 Notes: 3175 If the nnz parameter is given then the nz parameter is ignored 3176 3177 You can call MatGetInfo() to get information on how effective the preallocation was; 3178 for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 3179 You can also run with the option -info and look for messages with the string 3180 malloc in them to see if additional memory allocation was needed. 3181 3182 The block AIJ format is fully compatible with standard Fortran 77 3183 storage. That is, the stored row and column indices can begin at 3184 either one (as in Fortran) or zero. See the users' manual for details. 3185 3186 Specify the preallocated storage with either nz or nnz (not both). 3187 Set nz=PETSC_DEFAULT and nnz=PETSC_NULL for PETSc to control dynamic memory 3188 allocation. For additional details, see the users manual chapter on 3189 matrices. 3190 3191 .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatGetInfo() 3192 @*/ 3193 PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt nz,const PetscInt nnz[]) 3194 { 3195 PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[]); 3196 3197 PetscFunctionBegin; 3198 ierr = PetscObjectQueryFunction((PetscObject)B,"MatSeqBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 3199 if (f) { 3200 ierr = (*f)(B,bs,nz,nnz);CHKERRQ(ierr); 3201 } 3202 PetscFunctionReturn(0); 3203 } 3204 3205 #undef __FUNCT__ 3206 #define __FUNCT__ "MatSeqBAIJSetPreallocationCSR" 3207 /*@C 3208 MatSeqBAIJSetPreallocationCSR - Allocates memory for a sparse sequential matrix in AIJ format 3209 (the default sequential PETSc format). 3210 3211 Collective on MPI_Comm 3212 3213 Input Parameters: 3214 + A - the matrix 3215 . i - the indices into j for the start of each local row (starts with zero) 3216 . j - the column indices for each local row (starts with zero) these must be sorted for each row 3217 - v - optional values in the matrix 3218 3219 Level: developer 3220 3221 .keywords: matrix, aij, compressed row, sparse 3222 3223 .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatSeqBAIJSetPreallocation(), MATSEQBAIJ 3224 @*/ 3225 PetscErrorCode PETSCMAT_DLLEXPORT MatSeqBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 3226 { 3227 PetscErrorCode ierr,(*f)(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]); 3228 3229 PetscFunctionBegin; 3230 ierr = PetscObjectQueryFunction((PetscObject)B,"MatSeqBAIJSetPreallocationCSR_C",(void (**)(void))&f);CHKERRQ(ierr); 3231 if (f) { 3232 ierr = (*f)(B,bs,i,j,v);CHKERRQ(ierr); 3233 } 3234 PetscFunctionReturn(0); 3235 } 3236 3237 3238 #undef __FUNCT__ 3239 #define __FUNCT__ "MatCreateSeqBAIJWithArrays" 3240 /*@ 3241 MatCreateSeqBAIJWithArrays - Creates an sequential BAIJ matrix using matrix elements 3242 (upper triangular entries in CSR format) provided by the user. 3243 3244 Collective on MPI_Comm 3245 3246 Input Parameters: 3247 + comm - must be an MPI communicator of size 1 3248 . bs - size of block 3249 . m - number of rows 3250 . n - number of columns 3251 . i - row indices 3252 . j - column indices 3253 - a - matrix values 3254 3255 Output Parameter: 3256 . mat - the matrix 3257 3258 Level: intermediate 3259 3260 Notes: 3261 The i, j, and a arrays are not copied by this routine, the user must free these arrays 3262 once the matrix is destroyed 3263 3264 You cannot set new nonzero locations into this matrix, that will generate an error. 3265 3266 The i and j indices are 0 based 3267 3268 .seealso: MatCreate(), MatCreateMPIBAIJ(), MatCreateSeqBAIJ() 3269 3270 @*/ 3271 PetscErrorCode PETSCMAT_DLLEXPORT MatCreateSeqBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt* i,PetscInt*j,PetscScalar *a,Mat *mat) 3272 { 3273 PetscErrorCode ierr; 3274 PetscInt ii; 3275 Mat_SeqBAIJ *baij; 3276 3277 PetscFunctionBegin; 3278 if (bs != 1) SETERRQ1(PETSC_ERR_SUP,"block size %D > 1 is not supported yet",bs); 3279 if (i[0]) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0"); 3280 3281 ierr = MatCreate(comm,mat);CHKERRQ(ierr); 3282 ierr = MatSetSizes(*mat,m,n,m,n);CHKERRQ(ierr); 3283 ierr = MatSetType(*mat,MATSEQBAIJ);CHKERRQ(ierr); 3284 ierr = MatSeqBAIJSetPreallocation_SeqBAIJ(*mat,bs,MAT_SKIP_ALLOCATION,0);CHKERRQ(ierr); 3285 baij = (Mat_SeqBAIJ*)(*mat)->data; 3286 ierr = PetscMalloc2(m,PetscInt,&baij->imax,m,PetscInt,&baij->ilen);CHKERRQ(ierr); 3287 3288 baij->i = i; 3289 baij->j = j; 3290 baij->a = a; 3291 baij->singlemalloc = PETSC_FALSE; 3292 baij->nonew = -1; /*this indicates that inserting a new value in the matrix that generates a new nonzero is an error*/ 3293 baij->free_a = PETSC_FALSE; 3294 baij->free_ij = PETSC_FALSE; 3295 3296 for (ii=0; ii<m; ii++) { 3297 baij->ilen[ii] = baij->imax[ii] = i[ii+1] - i[ii]; 3298 #if defined(PETSC_USE_DEBUG) 3299 if (i[ii+1] - i[ii] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Negative row length in i (row indices) row = %d length = %d",ii,i[ii+1] - i[ii]); 3300 #endif 3301 } 3302 #if defined(PETSC_USE_DEBUG) 3303 for (ii=0; ii<baij->i[m]; ii++) { 3304 if (j[ii] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Negative column index at location = %d index = %d",ii,j[ii]); 3305 if (j[ii] > n - 1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column index to large at location = %d index = %d",ii,j[ii]); 3306 } 3307 #endif 3308 3309 ierr = MatAssemblyBegin(*mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 3310 ierr = MatAssemblyEnd(*mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 3311 PetscFunctionReturn(0); 3312 } 3313