1be1d678aSKris Buschelman 2ed3cc1f0SBarry Smith /* 3ed3cc1f0SBarry Smith Basic functions for basic parallel dense matrices. 4ed3cc1f0SBarry Smith */ 5ed3cc1f0SBarry Smith 6c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h> /*I "petscmat.h" I*/ 78949adfdSHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 8baa3c1c6SHong Zhang #include <petscblaslapack.h> 98965ea79SLois Curfman McInnes 10ab92ecdeSBarry Smith /*@ 11ab92ecdeSBarry Smith 12ab92ecdeSBarry Smith MatDenseGetLocalMatrix - For a MATMPIDENSE or MATSEQDENSE matrix returns the sequential 13ab92ecdeSBarry Smith matrix that represents the operator. For sequential matrices it returns itself. 14ab92ecdeSBarry Smith 15ab92ecdeSBarry Smith Input Parameter: 16ab92ecdeSBarry Smith . A - the Seq or MPI dense matrix 17ab92ecdeSBarry Smith 18ab92ecdeSBarry Smith Output Parameter: 19ab92ecdeSBarry Smith . B - the inner matrix 20ab92ecdeSBarry Smith 218e6c10adSSatish Balay Level: intermediate 228e6c10adSSatish Balay 23ab92ecdeSBarry Smith @*/ 24ab92ecdeSBarry Smith PetscErrorCode MatDenseGetLocalMatrix(Mat A,Mat *B) 25ab92ecdeSBarry Smith { 26ab92ecdeSBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 27ab92ecdeSBarry Smith PetscErrorCode ierr; 28ace3abfcSBarry Smith PetscBool flg; 29ab92ecdeSBarry Smith 30ab92ecdeSBarry Smith PetscFunctionBegin; 31d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 32d5ea218eSStefano Zampini PetscValidPointer(B,2); 33f140bc17SStefano Zampini ierr = PetscObjectBaseTypeCompare((PetscObject)A,MATMPIDENSE,&flg);CHKERRQ(ierr); 342205254eSKarl Rupp if (flg) *B = mat->A; 35f140bc17SStefano Zampini else { 36f140bc17SStefano Zampini ierr = PetscObjectBaseTypeCompare((PetscObject)A,MATSEQDENSE,&flg);CHKERRQ(ierr); 37f140bc17SStefano Zampini if (!flg) SETERRQ1(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Not for matrix type %s",((PetscObject)A)->type_name); 38f140bc17SStefano Zampini *B = A; 39f140bc17SStefano Zampini } 40ab92ecdeSBarry Smith PetscFunctionReturn(0); 41ab92ecdeSBarry Smith } 42ab92ecdeSBarry Smith 43ba8c8a56SBarry Smith PetscErrorCode MatGetRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 44ba8c8a56SBarry Smith { 45ba8c8a56SBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 46ba8c8a56SBarry Smith PetscErrorCode ierr; 47d0f46423SBarry Smith PetscInt lrow,rstart = A->rmap->rstart,rend = A->rmap->rend; 48ba8c8a56SBarry Smith 49ba8c8a56SBarry Smith PetscFunctionBegin; 50e7e72b3dSBarry Smith if (row < rstart || row >= rend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows"); 51ba8c8a56SBarry Smith lrow = row - rstart; 52ba8c8a56SBarry Smith ierr = MatGetRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v);CHKERRQ(ierr); 53ba8c8a56SBarry Smith PetscFunctionReturn(0); 54ba8c8a56SBarry Smith } 55ba8c8a56SBarry Smith 56637a0070SStefano Zampini PetscErrorCode MatRestoreRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 57ba8c8a56SBarry Smith { 58637a0070SStefano Zampini Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 59ba8c8a56SBarry Smith PetscErrorCode ierr; 60637a0070SStefano Zampini PetscInt lrow,rstart = A->rmap->rstart,rend = A->rmap->rend; 61ba8c8a56SBarry Smith 62ba8c8a56SBarry Smith PetscFunctionBegin; 63637a0070SStefano Zampini if (row < rstart || row >= rend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows"); 64637a0070SStefano Zampini lrow = row - rstart; 65637a0070SStefano Zampini ierr = MatRestoreRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v);CHKERRQ(ierr); 66ba8c8a56SBarry Smith PetscFunctionReturn(0); 67ba8c8a56SBarry Smith } 68ba8c8a56SBarry Smith 6911bd1e4dSLisandro Dalcin PetscErrorCode MatGetDiagonalBlock_MPIDense(Mat A,Mat *a) 700de54da6SSatish Balay { 710de54da6SSatish Balay Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 726849ba73SBarry Smith PetscErrorCode ierr; 73d0f46423SBarry Smith PetscInt m = A->rmap->n,rstart = A->rmap->rstart; 7487828ca2SBarry Smith PetscScalar *array; 750de54da6SSatish Balay MPI_Comm comm; 764b6ae80fSStefano Zampini PetscBool flg; 7711bd1e4dSLisandro Dalcin Mat B; 780de54da6SSatish Balay 790de54da6SSatish Balay PetscFunctionBegin; 804b6ae80fSStefano Zampini ierr = MatHasCongruentLayouts(A,&flg);CHKERRQ(ierr); 814b6ae80fSStefano Zampini if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only square matrices supported."); 8211bd1e4dSLisandro Dalcin ierr = PetscObjectQuery((PetscObject)A,"DiagonalBlock",(PetscObject*)&B);CHKERRQ(ierr); 83616b8fbbSStefano Zampini if (!B) { /* This should use MatDenseGetSubMatrix (not create), but we would need a call like MatRestoreDiagonalBlock */ 844b6ae80fSStefano Zampini 854b6ae80fSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)mdn->A,MATSEQDENSECUDA,&flg);CHKERRQ(ierr); 864b6ae80fSStefano Zampini if (flg) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Not coded for %s. Send an email to petsc-dev@mcs.anl.gov to request this feature",MATSEQDENSECUDA); 870de54da6SSatish Balay ierr = PetscObjectGetComm((PetscObject)(mdn->A),&comm);CHKERRQ(ierr); 8811bd1e4dSLisandro Dalcin ierr = MatCreate(comm,&B);CHKERRQ(ierr); 8911bd1e4dSLisandro Dalcin ierr = MatSetSizes(B,m,m,m,m);CHKERRQ(ierr); 9011bd1e4dSLisandro Dalcin ierr = MatSetType(B,((PetscObject)mdn->A)->type_name);CHKERRQ(ierr); 914b6ae80fSStefano Zampini ierr = MatDenseGetArrayRead(mdn->A,(const PetscScalar**)&array);CHKERRQ(ierr); 9211bd1e4dSLisandro Dalcin ierr = MatSeqDenseSetPreallocation(B,array+m*rstart);CHKERRQ(ierr); 934b6ae80fSStefano Zampini ierr = MatDenseRestoreArrayRead(mdn->A,(const PetscScalar**)&array);CHKERRQ(ierr); 9411bd1e4dSLisandro Dalcin ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 9511bd1e4dSLisandro Dalcin ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 9611bd1e4dSLisandro Dalcin ierr = PetscObjectCompose((PetscObject)A,"DiagonalBlock",(PetscObject)B);CHKERRQ(ierr); 9711bd1e4dSLisandro Dalcin *a = B; 9811bd1e4dSLisandro Dalcin ierr = MatDestroy(&B);CHKERRQ(ierr); 992205254eSKarl Rupp } else *a = B; 1000de54da6SSatish Balay PetscFunctionReturn(0); 1010de54da6SSatish Balay } 1020de54da6SSatish Balay 10313f74950SBarry Smith PetscErrorCode MatSetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],const PetscScalar v[],InsertMode addv) 1048965ea79SLois Curfman McInnes { 10539b7565bSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)mat->data; 106dfbe8321SBarry Smith PetscErrorCode ierr; 107d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 108ace3abfcSBarry Smith PetscBool roworiented = A->roworiented; 1098965ea79SLois Curfman McInnes 1103a40ed3dSBarry Smith PetscFunctionBegin; 1118965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 1125ef9f2a5SBarry Smith if (idxm[i] < 0) continue; 113e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 1148965ea79SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 1158965ea79SLois Curfman McInnes row = idxm[i] - rstart; 11639b7565bSBarry Smith if (roworiented) { 11739b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv);CHKERRQ(ierr); 1183a40ed3dSBarry Smith } else { 1198965ea79SLois Curfman McInnes for (j=0; j<n; j++) { 1205ef9f2a5SBarry Smith if (idxn[j] < 0) continue; 121e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 12239b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv);CHKERRQ(ierr); 12339b7565bSBarry Smith } 1248965ea79SLois Curfman McInnes } 1252205254eSKarl Rupp } else if (!A->donotstash) { 1265080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 12739b7565bSBarry Smith if (roworiented) { 128b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,idxm[i],n,idxn,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 129d36fbae8SSatish Balay } else { 130b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,idxm[i],n,idxn,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 13139b7565bSBarry Smith } 132b49de8d1SLois Curfman McInnes } 133b49de8d1SLois Curfman McInnes } 1343a40ed3dSBarry Smith PetscFunctionReturn(0); 135b49de8d1SLois Curfman McInnes } 136b49de8d1SLois Curfman McInnes 13713f74950SBarry Smith PetscErrorCode MatGetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 138b49de8d1SLois Curfman McInnes { 139b49de8d1SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 140dfbe8321SBarry Smith PetscErrorCode ierr; 141d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 142b49de8d1SLois Curfman McInnes 1433a40ed3dSBarry Smith PetscFunctionBegin; 144b49de8d1SLois Curfman McInnes for (i=0; i<m; i++) { 145e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); */ 146e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 147b49de8d1SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 148b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 149b49de8d1SLois Curfman McInnes for (j=0; j<n; j++) { 150e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); */ 151e7e72b3dSBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 152b49de8d1SLois Curfman McInnes ierr = MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j);CHKERRQ(ierr); 153b49de8d1SLois Curfman McInnes } 154e7e72b3dSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 1558965ea79SLois Curfman McInnes } 1563a40ed3dSBarry Smith PetscFunctionReturn(0); 1578965ea79SLois Curfman McInnes } 1588965ea79SLois Curfman McInnes 15949a6ff4bSBarry Smith static PetscErrorCode MatDenseGetLDA_MPIDense(Mat A,PetscInt *lda) 16049a6ff4bSBarry Smith { 16149a6ff4bSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 16249a6ff4bSBarry Smith PetscErrorCode ierr; 16349a6ff4bSBarry Smith 16449a6ff4bSBarry Smith PetscFunctionBegin; 16549a6ff4bSBarry Smith ierr = MatDenseGetLDA(a->A,lda);CHKERRQ(ierr); 16649a6ff4bSBarry Smith PetscFunctionReturn(0); 16749a6ff4bSBarry Smith } 16849a6ff4bSBarry Smith 169ad16ce7aSStefano Zampini static PetscErrorCode MatDenseSetLDA_MPIDense(Mat A,PetscInt lda) 170ad16ce7aSStefano Zampini { 171ad16ce7aSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17217359960SJose E. Roman PetscBool iscuda; 173ad16ce7aSStefano Zampini PetscErrorCode ierr; 174ad16ce7aSStefano Zampini 175ad16ce7aSStefano Zampini PetscFunctionBegin; 17617359960SJose E. Roman if (!a->A) { 17717359960SJose E. Roman if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 17817359960SJose E. Roman ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr); 17917359960SJose E. Roman ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr); 18017359960SJose E. Roman ierr = MatCreate(PETSC_COMM_SELF,&a->A);CHKERRQ(ierr); 18117359960SJose E. Roman ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)a->A);CHKERRQ(ierr); 18217359960SJose E. Roman ierr = MatSetSizes(a->A,A->rmap->n,A->cmap->N,A->rmap->n,A->cmap->N);CHKERRQ(ierr); 18317359960SJose E. Roman ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIDENSECUDA,&iscuda);CHKERRQ(ierr); 18417359960SJose E. Roman ierr = MatSetType(a->A,iscuda ? MATSEQDENSECUDA : MATSEQDENSE);CHKERRQ(ierr); 18517359960SJose E. Roman } 186ad16ce7aSStefano Zampini ierr = MatDenseSetLDA(a->A,lda);CHKERRQ(ierr); 187ad16ce7aSStefano Zampini PetscFunctionReturn(0); 188ad16ce7aSStefano Zampini } 189ad16ce7aSStefano Zampini 190637a0070SStefano Zampini static PetscErrorCode MatDenseGetArray_MPIDense(Mat A,PetscScalar **array) 191ff14e315SSatish Balay { 192ff14e315SSatish Balay Mat_MPIDense *a = (Mat_MPIDense*)A->data; 193dfbe8321SBarry Smith PetscErrorCode ierr; 194ff14e315SSatish Balay 1953a40ed3dSBarry Smith PetscFunctionBegin; 196616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1978c778c55SBarry Smith ierr = MatDenseGetArray(a->A,array);CHKERRQ(ierr); 1983a40ed3dSBarry Smith PetscFunctionReturn(0); 199ff14e315SSatish Balay } 200ff14e315SSatish Balay 201637a0070SStefano Zampini static PetscErrorCode MatDenseGetArrayRead_MPIDense(Mat A,const PetscScalar **array) 2028572280aSBarry Smith { 2038572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 2048572280aSBarry Smith PetscErrorCode ierr; 2058572280aSBarry Smith 2068572280aSBarry Smith PetscFunctionBegin; 207616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2088572280aSBarry Smith ierr = MatDenseGetArrayRead(a->A,array);CHKERRQ(ierr); 2098572280aSBarry Smith PetscFunctionReturn(0); 2108572280aSBarry Smith } 2118572280aSBarry Smith 2126947451fSStefano Zampini static PetscErrorCode MatDenseGetArrayWrite_MPIDense(Mat A,PetscScalar **array) 2136947451fSStefano Zampini { 2146947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 2156947451fSStefano Zampini PetscErrorCode ierr; 2166947451fSStefano Zampini 2176947451fSStefano Zampini PetscFunctionBegin; 218616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2196947451fSStefano Zampini ierr = MatDenseGetArrayWrite(a->A,array);CHKERRQ(ierr); 2206947451fSStefano Zampini PetscFunctionReturn(0); 2216947451fSStefano Zampini } 2226947451fSStefano Zampini 223637a0070SStefano Zampini static PetscErrorCode MatDensePlaceArray_MPIDense(Mat A,const PetscScalar *array) 224d3042a70SBarry Smith { 225d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 226d3042a70SBarry Smith PetscErrorCode ierr; 227d3042a70SBarry Smith 228d3042a70SBarry Smith PetscFunctionBegin; 229616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 230616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 231d3042a70SBarry Smith ierr = MatDensePlaceArray(a->A,array);CHKERRQ(ierr); 232d3042a70SBarry Smith PetscFunctionReturn(0); 233d3042a70SBarry Smith } 234d3042a70SBarry Smith 235d3042a70SBarry Smith static PetscErrorCode MatDenseResetArray_MPIDense(Mat A) 236d3042a70SBarry Smith { 237d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 238d3042a70SBarry Smith PetscErrorCode ierr; 239d3042a70SBarry Smith 240d3042a70SBarry Smith PetscFunctionBegin; 241616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 242616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 243d3042a70SBarry Smith ierr = MatDenseResetArray(a->A);CHKERRQ(ierr); 244d3042a70SBarry Smith PetscFunctionReturn(0); 245d3042a70SBarry Smith } 246d3042a70SBarry Smith 247d5ea218eSStefano Zampini static PetscErrorCode MatDenseReplaceArray_MPIDense(Mat A,const PetscScalar *array) 248d5ea218eSStefano Zampini { 249d5ea218eSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 250d5ea218eSStefano Zampini PetscErrorCode ierr; 251d5ea218eSStefano Zampini 252d5ea218eSStefano Zampini PetscFunctionBegin; 253616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 254616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 255d5ea218eSStefano Zampini ierr = MatDenseReplaceArray(a->A,array);CHKERRQ(ierr); 256d5ea218eSStefano Zampini PetscFunctionReturn(0); 257d5ea218eSStefano Zampini } 258d5ea218eSStefano Zampini 2597dae84e0SHong Zhang static PetscErrorCode MatCreateSubMatrix_MPIDense(Mat A,IS isrow,IS iscol,MatReuse scall,Mat *B) 260ca3fa75bSLois Curfman McInnes { 261ca3fa75bSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data,*newmatd; 2626849ba73SBarry Smith PetscErrorCode ierr; 263637a0070SStefano Zampini PetscInt lda,i,j,rstart,rend,nrows,ncols,Ncols,nlrows,nlcols; 2645d0c19d7SBarry Smith const PetscInt *irow,*icol; 265637a0070SStefano Zampini const PetscScalar *v; 266637a0070SStefano Zampini PetscScalar *bv; 267ca3fa75bSLois Curfman McInnes Mat newmat; 2684aa3045dSJed Brown IS iscol_local; 26942a884f0SBarry Smith MPI_Comm comm_is,comm_mat; 270ca3fa75bSLois Curfman McInnes 271ca3fa75bSLois Curfman McInnes PetscFunctionBegin; 27242a884f0SBarry Smith ierr = PetscObjectGetComm((PetscObject)A,&comm_mat);CHKERRQ(ierr); 27342a884f0SBarry Smith ierr = PetscObjectGetComm((PetscObject)iscol,&comm_is);CHKERRQ(ierr); 27442a884f0SBarry Smith if (comm_mat != comm_is) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NOTSAMECOMM,"IS communicator must match matrix communicator"); 27542a884f0SBarry Smith 2764aa3045dSJed Brown ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 277ca3fa75bSLois Curfman McInnes ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr); 2784aa3045dSJed Brown ierr = ISGetIndices(iscol_local,&icol);CHKERRQ(ierr); 279b9b97703SBarry Smith ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr); 280b9b97703SBarry Smith ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr); 2814aa3045dSJed Brown ierr = ISGetSize(iscol,&Ncols);CHKERRQ(ierr); /* global number of columns, size of iscol_local */ 282ca3fa75bSLois Curfman McInnes 283ca3fa75bSLois Curfman McInnes /* No parallel redistribution currently supported! Should really check each index set 2847eba5e9cSLois Curfman McInnes to comfirm that it is OK. ... Currently supports only submatrix same partitioning as 2857eba5e9cSLois Curfman McInnes original matrix! */ 286ca3fa75bSLois Curfman McInnes 287ca3fa75bSLois Curfman McInnes ierr = MatGetLocalSize(A,&nlrows,&nlcols);CHKERRQ(ierr); 2887eba5e9cSLois Curfman McInnes ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr); 289ca3fa75bSLois Curfman McInnes 290ca3fa75bSLois Curfman McInnes /* Check submatrix call */ 291ca3fa75bSLois Curfman McInnes if (scall == MAT_REUSE_MATRIX) { 292e32f2f54SBarry Smith /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */ 2937eba5e9cSLois Curfman McInnes /* Really need to test rows and column sizes! */ 294ca3fa75bSLois Curfman McInnes newmat = *B; 295ca3fa75bSLois Curfman McInnes } else { 296ca3fa75bSLois Curfman McInnes /* Create and fill new matrix */ 297ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&newmat);CHKERRQ(ierr); 2984aa3045dSJed Brown ierr = MatSetSizes(newmat,nrows,ncols,PETSC_DECIDE,Ncols);CHKERRQ(ierr); 2997adad957SLisandro Dalcin ierr = MatSetType(newmat,((PetscObject)A)->type_name);CHKERRQ(ierr); 3000298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr); 301ca3fa75bSLois Curfman McInnes } 302ca3fa75bSLois Curfman McInnes 303ca3fa75bSLois Curfman McInnes /* Now extract the data pointers and do the copy, column at a time */ 304ca3fa75bSLois Curfman McInnes newmatd = (Mat_MPIDense*)newmat->data; 305637a0070SStefano Zampini ierr = MatDenseGetArray(newmatd->A,&bv);CHKERRQ(ierr); 306637a0070SStefano Zampini ierr = MatDenseGetArrayRead(mat->A,&v);CHKERRQ(ierr); 307637a0070SStefano Zampini ierr = MatDenseGetLDA(mat->A,&lda);CHKERRQ(ierr); 3084aa3045dSJed Brown for (i=0; i<Ncols; i++) { 309637a0070SStefano Zampini const PetscScalar *av = v + lda*icol[i]; 310ca3fa75bSLois Curfman McInnes for (j=0; j<nrows; j++) { 3117eba5e9cSLois Curfman McInnes *bv++ = av[irow[j] - rstart]; 312ca3fa75bSLois Curfman McInnes } 313ca3fa75bSLois Curfman McInnes } 314637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(mat->A,&v);CHKERRQ(ierr); 315637a0070SStefano Zampini ierr = MatDenseRestoreArray(newmatd->A,&bv);CHKERRQ(ierr); 316ca3fa75bSLois Curfman McInnes 317ca3fa75bSLois Curfman McInnes /* Assemble the matrices so that the correct flags are set */ 318ca3fa75bSLois Curfman McInnes ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 319ca3fa75bSLois Curfman McInnes ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 320ca3fa75bSLois Curfman McInnes 321ca3fa75bSLois Curfman McInnes /* Free work space */ 322ca3fa75bSLois Curfman McInnes ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr); 3235bdf786aSShri Abhyankar ierr = ISRestoreIndices(iscol_local,&icol);CHKERRQ(ierr); 32432bb1f2dSLisandro Dalcin ierr = ISDestroy(&iscol_local);CHKERRQ(ierr); 325ca3fa75bSLois Curfman McInnes *B = newmat; 326ca3fa75bSLois Curfman McInnes PetscFunctionReturn(0); 327ca3fa75bSLois Curfman McInnes } 328ca3fa75bSLois Curfman McInnes 329637a0070SStefano Zampini PetscErrorCode MatDenseRestoreArray_MPIDense(Mat A,PetscScalar **array) 330ff14e315SSatish Balay { 33173a71a0fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 33273a71a0fSBarry Smith PetscErrorCode ierr; 33373a71a0fSBarry Smith 3343a40ed3dSBarry Smith PetscFunctionBegin; 3358c778c55SBarry Smith ierr = MatDenseRestoreArray(a->A,array);CHKERRQ(ierr); 3363a40ed3dSBarry Smith PetscFunctionReturn(0); 337ff14e315SSatish Balay } 338ff14e315SSatish Balay 339637a0070SStefano Zampini PetscErrorCode MatDenseRestoreArrayRead_MPIDense(Mat A,const PetscScalar **array) 3408572280aSBarry Smith { 3418572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 3428572280aSBarry Smith PetscErrorCode ierr; 3438572280aSBarry Smith 3448572280aSBarry Smith PetscFunctionBegin; 3458572280aSBarry Smith ierr = MatDenseRestoreArrayRead(a->A,array);CHKERRQ(ierr); 3468572280aSBarry Smith PetscFunctionReturn(0); 3478572280aSBarry Smith } 3488572280aSBarry Smith 3496947451fSStefano Zampini PetscErrorCode MatDenseRestoreArrayWrite_MPIDense(Mat A,PetscScalar **array) 3506947451fSStefano Zampini { 3516947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 3526947451fSStefano Zampini PetscErrorCode ierr; 3536947451fSStefano Zampini 3546947451fSStefano Zampini PetscFunctionBegin; 3556947451fSStefano Zampini ierr = MatDenseRestoreArrayWrite(a->A,array);CHKERRQ(ierr); 3566947451fSStefano Zampini PetscFunctionReturn(0); 3576947451fSStefano Zampini } 3586947451fSStefano Zampini 359dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode) 3608965ea79SLois Curfman McInnes { 36139ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 362dfbe8321SBarry Smith PetscErrorCode ierr; 36313f74950SBarry Smith PetscInt nstash,reallocs; 3648965ea79SLois Curfman McInnes 3653a40ed3dSBarry Smith PetscFunctionBegin; 3664067683fSStefano Zampini if (mdn->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 3678965ea79SLois Curfman McInnes 368d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 3698798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 370ae15b995SBarry Smith ierr = PetscInfo2(mdn->A,"Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 3713a40ed3dSBarry Smith PetscFunctionReturn(0); 3728965ea79SLois Curfman McInnes } 3738965ea79SLois Curfman McInnes 374dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode) 3758965ea79SLois Curfman McInnes { 37639ddd567SLois Curfman McInnes Mat_MPIDense *mdn=(Mat_MPIDense*)mat->data; 3776849ba73SBarry Smith PetscErrorCode ierr; 37813f74950SBarry Smith PetscInt i,*row,*col,flg,j,rstart,ncols; 37913f74950SBarry Smith PetscMPIInt n; 38087828ca2SBarry Smith PetscScalar *val; 3818965ea79SLois Curfman McInnes 3823a40ed3dSBarry Smith PetscFunctionBegin; 383910cf402Sprj- if (!mdn->donotstash && !mat->nooffprocentries) { 3848965ea79SLois Curfman McInnes /* wait on receives */ 3857ef1d9bdSSatish Balay while (1) { 3868798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 3877ef1d9bdSSatish Balay if (!flg) break; 3888965ea79SLois Curfman McInnes 3897ef1d9bdSSatish Balay for (i=0; i<n;) { 3907ef1d9bdSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 3912205254eSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 3922205254eSKarl Rupp if (row[j] != rstart) break; 3932205254eSKarl Rupp } 3947ef1d9bdSSatish Balay if (j < n) ncols = j-i; 3957ef1d9bdSSatish Balay else ncols = n-i; 3967ef1d9bdSSatish Balay /* Now assemble all these values with a single function call */ 3974b4eb8d3SJed Brown ierr = MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr); 3987ef1d9bdSSatish Balay i = j; 3998965ea79SLois Curfman McInnes } 4007ef1d9bdSSatish Balay } 4018798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 402910cf402Sprj- } 4038965ea79SLois Curfman McInnes 40439ddd567SLois Curfman McInnes ierr = MatAssemblyBegin(mdn->A,mode);CHKERRQ(ierr); 40539ddd567SLois Curfman McInnes ierr = MatAssemblyEnd(mdn->A,mode);CHKERRQ(ierr); 4068965ea79SLois Curfman McInnes 4076d4a8577SBarry Smith if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 40839ddd567SLois Curfman McInnes ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 4098965ea79SLois Curfman McInnes } 4103a40ed3dSBarry Smith PetscFunctionReturn(0); 4118965ea79SLois Curfman McInnes } 4128965ea79SLois Curfman McInnes 413dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIDense(Mat A) 4148965ea79SLois Curfman McInnes { 415dfbe8321SBarry Smith PetscErrorCode ierr; 41639ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 4173a40ed3dSBarry Smith 4183a40ed3dSBarry Smith PetscFunctionBegin; 4193a40ed3dSBarry Smith ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 4203a40ed3dSBarry Smith PetscFunctionReturn(0); 4218965ea79SLois Curfman McInnes } 4228965ea79SLois Curfman McInnes 423637a0070SStefano Zampini PetscErrorCode MatZeroRows_MPIDense(Mat A,PetscInt n,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 4248965ea79SLois Curfman McInnes { 42539ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 4266849ba73SBarry Smith PetscErrorCode ierr; 427637a0070SStefano Zampini PetscInt i,len,*lrows; 428637a0070SStefano Zampini 429637a0070SStefano Zampini PetscFunctionBegin; 430637a0070SStefano Zampini /* get locally owned rows */ 431637a0070SStefano Zampini ierr = PetscLayoutMapLocal(A->rmap,n,rows,&len,&lrows,NULL);CHKERRQ(ierr); 432637a0070SStefano Zampini /* fix right hand side if needed */ 433637a0070SStefano Zampini if (x && b) { 43497b48c8fSBarry Smith const PetscScalar *xx; 43597b48c8fSBarry Smith PetscScalar *bb; 4368965ea79SLois Curfman McInnes 43797b48c8fSBarry Smith ierr = VecGetArrayRead(x, &xx);CHKERRQ(ierr); 438637a0070SStefano Zampini ierr = VecGetArrayWrite(b, &bb);CHKERRQ(ierr); 439637a0070SStefano Zampini for (i=0;i<len;++i) bb[lrows[i]] = diag*xx[lrows[i]]; 44097b48c8fSBarry Smith ierr = VecRestoreArrayRead(x, &xx);CHKERRQ(ierr); 441637a0070SStefano Zampini ierr = VecRestoreArrayWrite(b, &bb);CHKERRQ(ierr); 44297b48c8fSBarry Smith } 443637a0070SStefano Zampini ierr = MatZeroRows(l->A,len,lrows,0.0,NULL,NULL);CHKERRQ(ierr); 444e2eb51b1SBarry Smith if (diag != 0.0) { 445637a0070SStefano Zampini Vec d; 446b9679d65SBarry Smith 447637a0070SStefano Zampini ierr = MatCreateVecs(A,NULL,&d);CHKERRQ(ierr); 448637a0070SStefano Zampini ierr = VecSet(d,diag);CHKERRQ(ierr); 449637a0070SStefano Zampini ierr = MatDiagonalSet(A,d,INSERT_VALUES);CHKERRQ(ierr); 450637a0070SStefano Zampini ierr = VecDestroy(&d);CHKERRQ(ierr); 451b9679d65SBarry Smith } 452606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 4533a40ed3dSBarry Smith PetscFunctionReturn(0); 4548965ea79SLois Curfman McInnes } 4558965ea79SLois Curfman McInnes 456cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMult_SeqDense(Mat,Vec,Vec); 457cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultAdd_SeqDense(Mat,Vec,Vec,Vec); 458cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTranspose_SeqDense(Mat,Vec,Vec); 459cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTransposeAdd_SeqDense(Mat,Vec,Vec,Vec); 460cc2e6a90SBarry Smith 461dfbe8321SBarry Smith PetscErrorCode MatMult_MPIDense(Mat mat,Vec xx,Vec yy) 4628965ea79SLois Curfman McInnes { 46339ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 464dfbe8321SBarry Smith PetscErrorCode ierr; 465637a0070SStefano Zampini const PetscScalar *ax; 466637a0070SStefano Zampini PetscScalar *ay; 467d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 468c456f294SBarry Smith 4693a40ed3dSBarry Smith PetscFunctionBegin; 470d0295fc0SJunchao Zhang ierr = VecGetArrayReadInPlace_Internal(xx,&ax,&axmtype);CHKERRQ(ierr); 471d0295fc0SJunchao Zhang ierr = VecGetArrayInPlace_Internal(mdn->lvec,&ay,&aymtype);CHKERRQ(ierr); 472d0295fc0SJunchao Zhang ierr = PetscSFBcastWithMemTypeBegin(mdn->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay);CHKERRQ(ierr); 473637a0070SStefano Zampini ierr = PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ax,ay);CHKERRQ(ierr); 474637a0070SStefano Zampini ierr = VecRestoreArrayInPlace(mdn->lvec,&ay);CHKERRQ(ierr); 475637a0070SStefano Zampini ierr = VecRestoreArrayReadInPlace(xx,&ax);CHKERRQ(ierr); 476637a0070SStefano Zampini ierr = (*mdn->A->ops->mult)(mdn->A,mdn->lvec,yy);CHKERRQ(ierr); 4773a40ed3dSBarry Smith PetscFunctionReturn(0); 4788965ea79SLois Curfman McInnes } 4798965ea79SLois Curfman McInnes 480dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz) 4818965ea79SLois Curfman McInnes { 48239ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 483dfbe8321SBarry Smith PetscErrorCode ierr; 484637a0070SStefano Zampini const PetscScalar *ax; 485637a0070SStefano Zampini PetscScalar *ay; 486d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 487c456f294SBarry Smith 4883a40ed3dSBarry Smith PetscFunctionBegin; 489d0295fc0SJunchao Zhang ierr = VecGetArrayReadInPlace_Internal(xx,&ax,&axmtype);CHKERRQ(ierr); 490d0295fc0SJunchao Zhang ierr = VecGetArrayInPlace_Internal(mdn->lvec,&ay,&aymtype);CHKERRQ(ierr); 491d0295fc0SJunchao Zhang ierr = PetscSFBcastWithMemTypeBegin(mdn->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay);CHKERRQ(ierr); 492637a0070SStefano Zampini ierr = PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ax,ay);CHKERRQ(ierr); 493637a0070SStefano Zampini ierr = VecRestoreArrayInPlace(mdn->lvec,&ay);CHKERRQ(ierr); 494637a0070SStefano Zampini ierr = VecRestoreArrayReadInPlace(xx,&ax);CHKERRQ(ierr); 495637a0070SStefano Zampini ierr = (*mdn->A->ops->multadd)(mdn->A,mdn->lvec,yy,zz);CHKERRQ(ierr); 4963a40ed3dSBarry Smith PetscFunctionReturn(0); 4978965ea79SLois Curfman McInnes } 4988965ea79SLois Curfman McInnes 499dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIDense(Mat A,Vec xx,Vec yy) 500096963f5SLois Curfman McInnes { 501096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 502dfbe8321SBarry Smith PetscErrorCode ierr; 503637a0070SStefano Zampini const PetscScalar *ax; 504637a0070SStefano Zampini PetscScalar *ay; 505d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 506096963f5SLois Curfman McInnes 5073a40ed3dSBarry Smith PetscFunctionBegin; 508637a0070SStefano Zampini ierr = VecSet(yy,0.0);CHKERRQ(ierr); 509637a0070SStefano Zampini ierr = (*a->A->ops->multtranspose)(a->A,xx,a->lvec);CHKERRQ(ierr); 510d0295fc0SJunchao Zhang ierr = VecGetArrayReadInPlace_Internal(a->lvec,&ax,&axmtype);CHKERRQ(ierr); 511d0295fc0SJunchao Zhang ierr = VecGetArrayInPlace_Internal(yy,&ay,&aymtype);CHKERRQ(ierr); 512d0295fc0SJunchao Zhang ierr = PetscSFReduceWithMemTypeBegin(a->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPIU_SUM);CHKERRQ(ierr); 513637a0070SStefano Zampini ierr = PetscSFReduceEnd(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM);CHKERRQ(ierr); 514637a0070SStefano Zampini ierr = VecRestoreArrayReadInPlace(a->lvec,&ax);CHKERRQ(ierr); 515637a0070SStefano Zampini ierr = VecRestoreArrayInPlace(yy,&ay);CHKERRQ(ierr); 5163a40ed3dSBarry Smith PetscFunctionReturn(0); 517096963f5SLois Curfman McInnes } 518096963f5SLois Curfman McInnes 519dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz) 520096963f5SLois Curfman McInnes { 521096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 522dfbe8321SBarry Smith PetscErrorCode ierr; 523637a0070SStefano Zampini const PetscScalar *ax; 524637a0070SStefano Zampini PetscScalar *ay; 525d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 526096963f5SLois Curfman McInnes 5273a40ed3dSBarry Smith PetscFunctionBegin; 5283501a2bdSLois Curfman McInnes ierr = VecCopy(yy,zz);CHKERRQ(ierr); 529637a0070SStefano Zampini ierr = (*a->A->ops->multtranspose)(a->A,xx,a->lvec);CHKERRQ(ierr); 530d0295fc0SJunchao Zhang ierr = VecGetArrayReadInPlace_Internal(a->lvec,&ax,&axmtype);CHKERRQ(ierr); 531d0295fc0SJunchao Zhang ierr = VecGetArrayInPlace_Internal(zz,&ay,&aymtype);CHKERRQ(ierr); 532d0295fc0SJunchao Zhang ierr = PetscSFReduceWithMemTypeBegin(a->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPIU_SUM);CHKERRQ(ierr); 533637a0070SStefano Zampini ierr = PetscSFReduceEnd(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM);CHKERRQ(ierr); 534637a0070SStefano Zampini ierr = VecRestoreArrayReadInPlace(a->lvec,&ax);CHKERRQ(ierr); 535637a0070SStefano Zampini ierr = VecRestoreArrayInPlace(zz,&ay);CHKERRQ(ierr); 5363a40ed3dSBarry Smith PetscFunctionReturn(0); 537096963f5SLois Curfman McInnes } 538096963f5SLois Curfman McInnes 539dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIDense(Mat A,Vec v) 5408965ea79SLois Curfman McInnes { 54139ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 542dfbe8321SBarry Smith PetscErrorCode ierr; 543637a0070SStefano Zampini PetscInt lda,len,i,n,m = A->rmap->n,radd; 54487828ca2SBarry Smith PetscScalar *x,zero = 0.0; 545637a0070SStefano Zampini const PetscScalar *av; 546ed3cc1f0SBarry Smith 5473a40ed3dSBarry Smith PetscFunctionBegin; 5482dcb1b2aSMatthew Knepley ierr = VecSet(v,zero);CHKERRQ(ierr); 5491ebc52fbSHong Zhang ierr = VecGetArray(v,&x);CHKERRQ(ierr); 550096963f5SLois Curfman McInnes ierr = VecGetSize(v,&n);CHKERRQ(ierr); 551e32f2f54SBarry Smith if (n != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec"); 552d0f46423SBarry Smith len = PetscMin(a->A->rmap->n,a->A->cmap->n); 553d0f46423SBarry Smith radd = A->rmap->rstart*m; 554637a0070SStefano Zampini ierr = MatDenseGetArrayRead(a->A,&av);CHKERRQ(ierr); 555637a0070SStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 55644cd7ae7SLois Curfman McInnes for (i=0; i<len; i++) { 557637a0070SStefano Zampini x[i] = av[radd + i*lda + i]; 558096963f5SLois Curfman McInnes } 559637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(a->A,&av);CHKERRQ(ierr); 5601ebc52fbSHong Zhang ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 5613a40ed3dSBarry Smith PetscFunctionReturn(0); 5628965ea79SLois Curfman McInnes } 5638965ea79SLois Curfman McInnes 564dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIDense(Mat mat) 5658965ea79SLois Curfman McInnes { 5663501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 567dfbe8321SBarry Smith PetscErrorCode ierr; 568ed3cc1f0SBarry Smith 5693a40ed3dSBarry Smith PetscFunctionBegin; 570aa482453SBarry Smith #if defined(PETSC_USE_LOG) 571d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D, Cols=%D",mat->rmap->N,mat->cmap->N); 5728965ea79SLois Curfman McInnes #endif 5738798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 574616b8fbbSStefano Zampini if (mdn->vecinuse) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 575616b8fbbSStefano Zampini if (mdn->matinuse) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 5766bf464f9SBarry Smith ierr = MatDestroy(&mdn->A);CHKERRQ(ierr); 5776bf464f9SBarry Smith ierr = VecDestroy(&mdn->lvec);CHKERRQ(ierr); 578637a0070SStefano Zampini ierr = PetscSFDestroy(&mdn->Mvctx);CHKERRQ(ierr); 5796947451fSStefano Zampini ierr = VecDestroy(&mdn->cvec);CHKERRQ(ierr); 5805ea7661aSPierre Jolivet ierr = MatDestroy(&mdn->cmat);CHKERRQ(ierr); 58101b82886SBarry Smith 582bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 583f4259b30SLisandro Dalcin ierr = PetscObjectChangeTypeName((PetscObject)mat,NULL);CHKERRQ(ierr); 5848baccfbdSHong Zhang 58549a6ff4bSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",NULL);CHKERRQ(ierr); 586ad16ce7aSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseSetLDA_C",NULL);CHKERRQ(ierr); 5878baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",NULL);CHKERRQ(ierr); 5888572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",NULL);CHKERRQ(ierr); 5898572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",NULL);CHKERRQ(ierr); 5908572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",NULL);CHKERRQ(ierr); 5916947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayWrite_C",NULL);CHKERRQ(ierr); 5926947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayWrite_C",NULL);CHKERRQ(ierr); 593d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",NULL);CHKERRQ(ierr); 594d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",NULL);CHKERRQ(ierr); 595d5ea218eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseReplaceArray_C",NULL);CHKERRQ(ierr); 5968baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 5978baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",NULL);CHKERRQ(ierr); 5988baccfbdSHong Zhang #endif 599d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 600d24d4204SJose E. Roman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_scalapack_C",NULL);CHKERRQ(ierr); 601d24d4204SJose E. Roman #endif 602bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",NULL);CHKERRQ(ierr); 6034222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 6044222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaij_C",NULL);CHKERRQ(ierr); 6056718818eSStefano Zampini #if defined (PETSC_HAVE_CUDA) 6066718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaijcusparse_mpidense_C",NULL);CHKERRQ(ierr); 6076718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaijcusparse_C",NULL);CHKERRQ(ierr); 6086718818eSStefano Zampini #endif 60986aefd0dSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",NULL);CHKERRQ(ierr); 61086aefd0dSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",NULL);CHKERRQ(ierr); 6116947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",NULL);CHKERRQ(ierr); 6126947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",NULL);CHKERRQ(ierr); 6136947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",NULL);CHKERRQ(ierr); 6146947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",NULL);CHKERRQ(ierr); 6156947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",NULL);CHKERRQ(ierr); 6166947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",NULL);CHKERRQ(ierr); 6175ea7661aSPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetSubMatrix_C",NULL);CHKERRQ(ierr); 6185ea7661aSPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreSubMatrix_C",NULL);CHKERRQ(ierr); 6193a40ed3dSBarry Smith PetscFunctionReturn(0); 6208965ea79SLois Curfman McInnes } 62139ddd567SLois Curfman McInnes 62252c5f739Sprj- PETSC_INTERN PetscErrorCode MatView_SeqDense(Mat,PetscViewer); 62352c5f739Sprj- 6249804daf3SBarry Smith #include <petscdraw.h> 6256849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 6268965ea79SLois Curfman McInnes { 62739ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 628dfbe8321SBarry Smith PetscErrorCode ierr; 629616b8fbbSStefano Zampini PetscMPIInt rank; 63019fd82e9SBarry Smith PetscViewerType vtype; 631ace3abfcSBarry Smith PetscBool iascii,isdraw; 632b0a32e0cSBarry Smith PetscViewer sviewer; 633f3ef73ceSBarry Smith PetscViewerFormat format; 6348965ea79SLois Curfman McInnes 6353a40ed3dSBarry Smith PetscFunctionBegin; 636616b8fbbSStefano Zampini ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr); 637251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 638251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 63932077d6dSBarry Smith if (iascii) { 640b0a32e0cSBarry Smith ierr = PetscViewerGetType(viewer,&vtype);CHKERRQ(ierr); 641b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 642456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 6434e220ebcSLois Curfman McInnes MatInfo info; 644888f2ed8SSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 6451575c14dSBarry Smith ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr); 6467b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer," [%d] local rows %D nz %D nz alloced %D mem %D \n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory);CHKERRQ(ierr); 647b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 6481575c14dSBarry Smith ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr); 649637a0070SStefano Zampini ierr = PetscSFView(mdn->Mvctx,viewer);CHKERRQ(ierr); 6503a40ed3dSBarry Smith PetscFunctionReturn(0); 651fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 6523a40ed3dSBarry Smith PetscFunctionReturn(0); 6538965ea79SLois Curfman McInnes } 654f1af5d2fSBarry Smith } else if (isdraw) { 655b0a32e0cSBarry Smith PetscDraw draw; 656ace3abfcSBarry Smith PetscBool isnull; 657f1af5d2fSBarry Smith 658b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 659b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 660f1af5d2fSBarry Smith if (isnull) PetscFunctionReturn(0); 661f1af5d2fSBarry Smith } 66277ed5343SBarry Smith 6637da1fb6eSBarry Smith { 6648965ea79SLois Curfman McInnes /* assemble the entire matrix onto first processor. */ 6658965ea79SLois Curfman McInnes Mat A; 666d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,m,row,i,nz; 667ba8c8a56SBarry Smith PetscInt *cols; 668ba8c8a56SBarry Smith PetscScalar *vals; 6698965ea79SLois Curfman McInnes 670ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr); 6718965ea79SLois Curfman McInnes if (!rank) { 672f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 6733a40ed3dSBarry Smith } else { 674f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 6758965ea79SLois Curfman McInnes } 6767adad957SLisandro Dalcin /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */ 677878740d9SKris Buschelman ierr = MatSetType(A,MATMPIDENSE);CHKERRQ(ierr); 6780298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(A,NULL);CHKERRQ(ierr); 6793bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr); 6808965ea79SLois Curfman McInnes 68139ddd567SLois Curfman McInnes /* Copy the matrix ... This isn't the most efficient means, 68239ddd567SLois Curfman McInnes but it's quick for now */ 68351022da4SBarry Smith A->insertmode = INSERT_VALUES; 6842205254eSKarl Rupp 6852205254eSKarl Rupp row = mat->rmap->rstart; 6862205254eSKarl Rupp m = mdn->A->rmap->n; 6878965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 688ba8c8a56SBarry Smith ierr = MatGetRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 689ba8c8a56SBarry Smith ierr = MatSetValues_MPIDense(A,1,&row,nz,cols,vals,INSERT_VALUES);CHKERRQ(ierr); 690ba8c8a56SBarry Smith ierr = MatRestoreRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 69139ddd567SLois Curfman McInnes row++; 6928965ea79SLois Curfman McInnes } 6938965ea79SLois Curfman McInnes 6946d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 6956d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 6963f08860eSBarry Smith ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 697b9b97703SBarry Smith if (!rank) { 6981a9d3c3cSBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPIDense*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr); 6997da1fb6eSBarry Smith ierr = MatView_SeqDense(((Mat_MPIDense*)(A->data))->A,sviewer);CHKERRQ(ierr); 7008965ea79SLois Curfman McInnes } 7013f08860eSBarry Smith ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 702b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 7036bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 7048965ea79SLois Curfman McInnes } 7053a40ed3dSBarry Smith PetscFunctionReturn(0); 7068965ea79SLois Curfman McInnes } 7078965ea79SLois Curfman McInnes 708dfbe8321SBarry Smith PetscErrorCode MatView_MPIDense(Mat mat,PetscViewer viewer) 7098965ea79SLois Curfman McInnes { 710dfbe8321SBarry Smith PetscErrorCode ierr; 711ace3abfcSBarry Smith PetscBool iascii,isbinary,isdraw,issocket; 7128965ea79SLois Curfman McInnes 713433994e6SBarry Smith PetscFunctionBegin; 714251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 715251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 716251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 717251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 7180f5bd95cSBarry Smith 71932077d6dSBarry Smith if (iascii || issocket || isdraw) { 720f1af5d2fSBarry Smith ierr = MatView_MPIDense_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 7210f5bd95cSBarry Smith } else if (isbinary) { 7228491ab44SLisandro Dalcin ierr = MatView_Dense_Binary(mat,viewer);CHKERRQ(ierr); 72311aeaf0aSBarry Smith } 7243a40ed3dSBarry Smith PetscFunctionReturn(0); 7258965ea79SLois Curfman McInnes } 7268965ea79SLois Curfman McInnes 727dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info) 7288965ea79SLois Curfman McInnes { 7293501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 7303501a2bdSLois Curfman McInnes Mat mdn = mat->A; 731dfbe8321SBarry Smith PetscErrorCode ierr; 7323966268fSBarry Smith PetscLogDouble isend[5],irecv[5]; 7338965ea79SLois Curfman McInnes 7343a40ed3dSBarry Smith PetscFunctionBegin; 7354e220ebcSLois Curfman McInnes info->block_size = 1.0; 7362205254eSKarl Rupp 7374e220ebcSLois Curfman McInnes ierr = MatGetInfo(mdn,MAT_LOCAL,info);CHKERRQ(ierr); 7382205254eSKarl Rupp 7394e220ebcSLois Curfman McInnes isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 7404e220ebcSLois Curfman McInnes isend[3] = info->memory; isend[4] = info->mallocs; 7418965ea79SLois Curfman McInnes if (flag == MAT_LOCAL) { 7424e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 7434e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 7444e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 7454e220ebcSLois Curfman McInnes info->memory = isend[3]; 7464e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 7478965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 7483966268fSBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 7492205254eSKarl Rupp 7504e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7514e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7524e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7534e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7544e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7558965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 7563966268fSBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 7572205254eSKarl Rupp 7584e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7594e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7604e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7614e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7624e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7638965ea79SLois Curfman McInnes } 7644e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 7654e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 7664e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 7673a40ed3dSBarry Smith PetscFunctionReturn(0); 7688965ea79SLois Curfman McInnes } 7698965ea79SLois Curfman McInnes 770ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIDense(Mat A,MatOption op,PetscBool flg) 7718965ea79SLois Curfman McInnes { 77239ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 773dfbe8321SBarry Smith PetscErrorCode ierr; 7748965ea79SLois Curfman McInnes 7753a40ed3dSBarry Smith PetscFunctionBegin; 77612c028f9SKris Buschelman switch (op) { 777512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 77812c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 77912c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 78043674050SBarry Smith MatCheckPreallocated(A,1); 7814e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 78212c028f9SKris Buschelman break; 78312c028f9SKris Buschelman case MAT_ROW_ORIENTED: 78443674050SBarry Smith MatCheckPreallocated(A,1); 7854e0d8c25SBarry Smith a->roworiented = flg; 7864e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 78712c028f9SKris Buschelman break; 7884e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 78913fa8e87SLisandro Dalcin case MAT_KEEP_NONZERO_PATTERN: 79012c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 791071fcb05SBarry Smith case MAT_SORTED_FULL: 792290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 79312c028f9SKris Buschelman break; 79412c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 7954e0d8c25SBarry Smith a->donotstash = flg; 79612c028f9SKris Buschelman break; 79777e54ba9SKris Buschelman case MAT_SYMMETRIC: 79877e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 7999a4540c5SBarry Smith case MAT_HERMITIAN: 8009a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 801600fe468SBarry Smith case MAT_IGNORE_LOWER_TRIANGULAR: 8025d7aebe8SStefano Zampini case MAT_IGNORE_ZERO_ENTRIES: 803290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 80477e54ba9SKris Buschelman break; 80512c028f9SKris Buschelman default: 806e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %s",MatOptions[op]); 8073a40ed3dSBarry Smith } 8083a40ed3dSBarry Smith PetscFunctionReturn(0); 8098965ea79SLois Curfman McInnes } 8108965ea79SLois Curfman McInnes 811dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIDense(Mat A,Vec ll,Vec rr) 8125b2fa520SLois Curfman McInnes { 8135b2fa520SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 814637a0070SStefano Zampini const PetscScalar *l; 815637a0070SStefano Zampini PetscScalar x,*v,*vv,*r; 816dfbe8321SBarry Smith PetscErrorCode ierr; 817637a0070SStefano Zampini PetscInt i,j,s2a,s3a,s2,s3,m=mdn->A->rmap->n,n=mdn->A->cmap->n,lda; 8185b2fa520SLois Curfman McInnes 8195b2fa520SLois Curfman McInnes PetscFunctionBegin; 820637a0070SStefano Zampini ierr = MatDenseGetArray(mdn->A,&vv);CHKERRQ(ierr); 821637a0070SStefano Zampini ierr = MatDenseGetLDA(mdn->A,&lda);CHKERRQ(ierr); 82272d926a5SLois Curfman McInnes ierr = MatGetLocalSize(A,&s2,&s3);CHKERRQ(ierr); 8235b2fa520SLois Curfman McInnes if (ll) { 82472d926a5SLois Curfman McInnes ierr = VecGetLocalSize(ll,&s2a);CHKERRQ(ierr); 825637a0070SStefano Zampini if (s2a != s2) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vector non-conforming local size, %D != %D", s2a, s2); 826bca11509SBarry Smith ierr = VecGetArrayRead(ll,&l);CHKERRQ(ierr); 8275b2fa520SLois Curfman McInnes for (i=0; i<m; i++) { 8285b2fa520SLois Curfman McInnes x = l[i]; 829637a0070SStefano Zampini v = vv + i; 830637a0070SStefano Zampini for (j=0; j<n; j++) { (*v) *= x; v+= lda;} 8315b2fa520SLois Curfman McInnes } 832bca11509SBarry Smith ierr = VecRestoreArrayRead(ll,&l);CHKERRQ(ierr); 833637a0070SStefano Zampini ierr = PetscLogFlops(1.0*n*m);CHKERRQ(ierr); 8345b2fa520SLois Curfman McInnes } 8355b2fa520SLois Curfman McInnes if (rr) { 836637a0070SStefano Zampini const PetscScalar *ar; 837637a0070SStefano Zampini 838175be7b4SMatthew Knepley ierr = VecGetLocalSize(rr,&s3a);CHKERRQ(ierr); 839e32f2f54SBarry Smith if (s3a != s3) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vec non-conforming local size, %d != %d.", s3a, s3); 840637a0070SStefano Zampini ierr = VecGetArrayRead(rr,&ar);CHKERRQ(ierr); 841637a0070SStefano Zampini ierr = VecGetArray(mdn->lvec,&r);CHKERRQ(ierr); 842637a0070SStefano Zampini ierr = PetscSFBcastBegin(mdn->Mvctx,MPIU_SCALAR,ar,r);CHKERRQ(ierr); 843637a0070SStefano Zampini ierr = PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ar,r);CHKERRQ(ierr); 844637a0070SStefano Zampini ierr = VecRestoreArrayRead(rr,&ar);CHKERRQ(ierr); 8455b2fa520SLois Curfman McInnes for (i=0; i<n; i++) { 8465b2fa520SLois Curfman McInnes x = r[i]; 847637a0070SStefano Zampini v = vv + i*lda; 8482205254eSKarl Rupp for (j=0; j<m; j++) (*v++) *= x; 8495b2fa520SLois Curfman McInnes } 850637a0070SStefano Zampini ierr = VecRestoreArray(mdn->lvec,&r);CHKERRQ(ierr); 851637a0070SStefano Zampini ierr = PetscLogFlops(1.0*n*m);CHKERRQ(ierr); 8525b2fa520SLois Curfman McInnes } 853637a0070SStefano Zampini ierr = MatDenseRestoreArray(mdn->A,&vv);CHKERRQ(ierr); 8545b2fa520SLois Curfman McInnes PetscFunctionReturn(0); 8555b2fa520SLois Curfman McInnes } 8565b2fa520SLois Curfman McInnes 857dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIDense(Mat A,NormType type,PetscReal *nrm) 858096963f5SLois Curfman McInnes { 8593501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 860dfbe8321SBarry Smith PetscErrorCode ierr; 86113f74950SBarry Smith PetscInt i,j; 862616b8fbbSStefano Zampini PetscMPIInt size; 863329f5518SBarry Smith PetscReal sum = 0.0; 864637a0070SStefano Zampini const PetscScalar *av,*v; 8653501a2bdSLois Curfman McInnes 8663a40ed3dSBarry Smith PetscFunctionBegin; 867637a0070SStefano Zampini ierr = MatDenseGetArrayRead(mdn->A,&av);CHKERRQ(ierr); 868637a0070SStefano Zampini v = av; 869616b8fbbSStefano Zampini ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr); 870616b8fbbSStefano Zampini if (size == 1) { 871064f8208SBarry Smith ierr = MatNorm(mdn->A,type,nrm);CHKERRQ(ierr); 8723501a2bdSLois Curfman McInnes } else { 8733501a2bdSLois Curfman McInnes if (type == NORM_FROBENIUS) { 874d0f46423SBarry Smith for (i=0; i<mdn->A->cmap->n*mdn->A->rmap->n; i++) { 875329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 8763501a2bdSLois Curfman McInnes } 877b2566f29SBarry Smith ierr = MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 8788f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 879dc0b31edSSatish Balay ierr = PetscLogFlops(2.0*mdn->A->cmap->n*mdn->A->rmap->n);CHKERRQ(ierr); 8803a40ed3dSBarry Smith } else if (type == NORM_1) { 881329f5518SBarry Smith PetscReal *tmp,*tmp2; 882580bdb30SBarry Smith ierr = PetscCalloc2(A->cmap->N,&tmp,A->cmap->N,&tmp2);CHKERRQ(ierr); 883064f8208SBarry Smith *nrm = 0.0; 884637a0070SStefano Zampini v = av; 885d0f46423SBarry Smith for (j=0; j<mdn->A->cmap->n; j++) { 886d0f46423SBarry Smith for (i=0; i<mdn->A->rmap->n; i++) { 88767e560aaSBarry Smith tmp[j] += PetscAbsScalar(*v); v++; 8883501a2bdSLois Curfman McInnes } 8893501a2bdSLois Curfman McInnes } 890b2566f29SBarry Smith ierr = MPIU_Allreduce(tmp,tmp2,A->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 891d0f46423SBarry Smith for (j=0; j<A->cmap->N; j++) { 892064f8208SBarry Smith if (tmp2[j] > *nrm) *nrm = tmp2[j]; 8933501a2bdSLois Curfman McInnes } 8948627564fSBarry Smith ierr = PetscFree2(tmp,tmp2);CHKERRQ(ierr); 895d0f46423SBarry Smith ierr = PetscLogFlops(A->cmap->n*A->rmap->n);CHKERRQ(ierr); 8963a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 897329f5518SBarry Smith PetscReal ntemp; 8983501a2bdSLois Curfman McInnes ierr = MatNorm(mdn->A,type,&ntemp);CHKERRQ(ierr); 899b2566f29SBarry Smith ierr = MPIU_Allreduce(&ntemp,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 900ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"No support for two norm"); 9013501a2bdSLois Curfman McInnes } 902637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(mdn->A,&av);CHKERRQ(ierr); 9033a40ed3dSBarry Smith PetscFunctionReturn(0); 9043501a2bdSLois Curfman McInnes } 9053501a2bdSLois Curfman McInnes 906fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIDense(Mat A,MatReuse reuse,Mat *matout) 9073501a2bdSLois Curfman McInnes { 9083501a2bdSLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 9093501a2bdSLois Curfman McInnes Mat B; 910d0f46423SBarry Smith PetscInt M = A->rmap->N,N = A->cmap->N,m,n,*rwork,rstart = A->rmap->rstart; 9116849ba73SBarry Smith PetscErrorCode ierr; 912637a0070SStefano Zampini PetscInt j,i,lda; 91387828ca2SBarry Smith PetscScalar *v; 9143501a2bdSLois Curfman McInnes 9153a40ed3dSBarry Smith PetscFunctionBegin; 916cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 917ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 918d0f46423SBarry Smith ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr); 9197adad957SLisandro Dalcin ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr); 9200298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(B,NULL);CHKERRQ(ierr); 921637a0070SStefano Zampini } else B = *matout; 9223501a2bdSLois Curfman McInnes 923637a0070SStefano Zampini m = a->A->rmap->n; n = a->A->cmap->n; 924637a0070SStefano Zampini ierr = MatDenseGetArrayRead(a->A,(const PetscScalar**)&v);CHKERRQ(ierr); 925637a0070SStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 926785e854fSJed Brown ierr = PetscMalloc1(m,&rwork);CHKERRQ(ierr); 9273501a2bdSLois Curfman McInnes for (i=0; i<m; i++) rwork[i] = rstart + i; 9281acff37aSSatish Balay for (j=0; j<n; j++) { 9293501a2bdSLois Curfman McInnes ierr = MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES);CHKERRQ(ierr); 930637a0070SStefano Zampini v += lda; 9313501a2bdSLois Curfman McInnes } 932637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(a->A,(const PetscScalar**)&v);CHKERRQ(ierr); 933606d414cSSatish Balay ierr = PetscFree(rwork);CHKERRQ(ierr); 9346d4a8577SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 9356d4a8577SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 936cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) { 9373501a2bdSLois Curfman McInnes *matout = B; 9383501a2bdSLois Curfman McInnes } else { 93928be2f97SBarry Smith ierr = MatHeaderMerge(A,&B);CHKERRQ(ierr); 9403501a2bdSLois Curfman McInnes } 9413a40ed3dSBarry Smith PetscFunctionReturn(0); 942096963f5SLois Curfman McInnes } 943096963f5SLois Curfman McInnes 9446849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat*); 94552c5f739Sprj- PETSC_INTERN PetscErrorCode MatScale_MPIDense(Mat,PetscScalar); 9468965ea79SLois Curfman McInnes 9474994cf47SJed Brown PetscErrorCode MatSetUp_MPIDense(Mat A) 948273d9f13SBarry Smith { 949dfbe8321SBarry Smith PetscErrorCode ierr; 950273d9f13SBarry Smith 951273d9f13SBarry Smith PetscFunctionBegin; 95218992e5dSStefano Zampini ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr); 95318992e5dSStefano Zampini ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr); 95418992e5dSStefano Zampini if (!A->preallocated) { 955f4259b30SLisandro Dalcin ierr = MatMPIDenseSetPreallocation(A,NULL);CHKERRQ(ierr); 95618992e5dSStefano Zampini } 957273d9f13SBarry Smith PetscFunctionReturn(0); 958273d9f13SBarry Smith } 959273d9f13SBarry Smith 960488007eeSBarry Smith PetscErrorCode MatAXPY_MPIDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str) 961488007eeSBarry Smith { 962488007eeSBarry Smith PetscErrorCode ierr; 963488007eeSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)Y->data, *B = (Mat_MPIDense*)X->data; 964488007eeSBarry Smith 965488007eeSBarry Smith PetscFunctionBegin; 966488007eeSBarry Smith ierr = MatAXPY(A->A,alpha,B->A,str);CHKERRQ(ierr); 967488007eeSBarry Smith PetscFunctionReturn(0); 968488007eeSBarry Smith } 969488007eeSBarry Smith 9707087cfbeSBarry Smith PetscErrorCode MatConjugate_MPIDense(Mat mat) 971ba337c44SJed Brown { 972ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)mat->data; 973ba337c44SJed Brown PetscErrorCode ierr; 974ba337c44SJed Brown 975ba337c44SJed Brown PetscFunctionBegin; 976ba337c44SJed Brown ierr = MatConjugate(a->A);CHKERRQ(ierr); 977ba337c44SJed Brown PetscFunctionReturn(0); 978ba337c44SJed Brown } 979ba337c44SJed Brown 980ba337c44SJed Brown PetscErrorCode MatRealPart_MPIDense(Mat A) 981ba337c44SJed Brown { 982ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 983ba337c44SJed Brown PetscErrorCode ierr; 984ba337c44SJed Brown 985ba337c44SJed Brown PetscFunctionBegin; 986ba337c44SJed Brown ierr = MatRealPart(a->A);CHKERRQ(ierr); 987ba337c44SJed Brown PetscFunctionReturn(0); 988ba337c44SJed Brown } 989ba337c44SJed Brown 990ba337c44SJed Brown PetscErrorCode MatImaginaryPart_MPIDense(Mat A) 991ba337c44SJed Brown { 992ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 993ba337c44SJed Brown PetscErrorCode ierr; 994ba337c44SJed Brown 995ba337c44SJed Brown PetscFunctionBegin; 996ba337c44SJed Brown ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 997ba337c44SJed Brown PetscFunctionReturn(0); 998ba337c44SJed Brown } 999ba337c44SJed Brown 100049a6ff4bSBarry Smith static PetscErrorCode MatGetColumnVector_MPIDense(Mat A,Vec v,PetscInt col) 100149a6ff4bSBarry Smith { 100249a6ff4bSBarry Smith PetscErrorCode ierr; 1003637a0070SStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*) A->data; 100449a6ff4bSBarry Smith 100549a6ff4bSBarry Smith PetscFunctionBegin; 1006637a0070SStefano Zampini if (!a->A) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Missing local matrix"); 1007637a0070SStefano Zampini if (!a->A->ops->getcolumnvector) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Missing get column operation"); 1008637a0070SStefano Zampini ierr = (*a->A->ops->getcolumnvector)(a->A,v,col);CHKERRQ(ierr); 100949a6ff4bSBarry Smith PetscFunctionReturn(0); 101049a6ff4bSBarry Smith } 101149a6ff4bSBarry Smith 101252c5f739Sprj- PETSC_INTERN PetscErrorCode MatGetColumnNorms_SeqDense(Mat,NormType,PetscReal*); 101352c5f739Sprj- 10140716a85fSBarry Smith PetscErrorCode MatGetColumnNorms_MPIDense(Mat A,NormType type,PetscReal *norms) 10150716a85fSBarry Smith { 10160716a85fSBarry Smith PetscErrorCode ierr; 10170716a85fSBarry Smith PetscInt i,n; 10180716a85fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*) A->data; 10190716a85fSBarry Smith PetscReal *work; 10200716a85fSBarry Smith 10210716a85fSBarry Smith PetscFunctionBegin; 10220298fd71SBarry Smith ierr = MatGetSize(A,NULL,&n);CHKERRQ(ierr); 1023785e854fSJed Brown ierr = PetscMalloc1(n,&work);CHKERRQ(ierr); 10240716a85fSBarry Smith ierr = MatGetColumnNorms_SeqDense(a->A,type,work);CHKERRQ(ierr); 10250716a85fSBarry Smith if (type == NORM_2) { 10260716a85fSBarry Smith for (i=0; i<n; i++) work[i] *= work[i]; 10270716a85fSBarry Smith } 10280716a85fSBarry Smith if (type == NORM_INFINITY) { 1029b2566f29SBarry Smith ierr = MPIU_Allreduce(work,norms,n,MPIU_REAL,MPIU_MAX,A->hdr.comm);CHKERRQ(ierr); 10300716a85fSBarry Smith } else { 1031b2566f29SBarry Smith ierr = MPIU_Allreduce(work,norms,n,MPIU_REAL,MPIU_SUM,A->hdr.comm);CHKERRQ(ierr); 10320716a85fSBarry Smith } 10330716a85fSBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 10340716a85fSBarry Smith if (type == NORM_2) { 10358f1a2a5eSBarry Smith for (i=0; i<n; i++) norms[i] = PetscSqrtReal(norms[i]); 10360716a85fSBarry Smith } 10370716a85fSBarry Smith PetscFunctionReturn(0); 10380716a85fSBarry Smith } 10390716a85fSBarry Smith 1040637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 10416947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVec_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10426947451fSStefano Zampini { 10436947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10446947451fSStefano Zampini PetscErrorCode ierr; 10456947451fSStefano Zampini PetscInt lda; 10466947451fSStefano Zampini 10476947451fSStefano Zampini PetscFunctionBegin; 1048616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1049616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 10506947451fSStefano Zampini if (!a->cvec) { 10516947451fSStefano Zampini ierr = VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr); 1052616b8fbbSStefano Zampini ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec);CHKERRQ(ierr); 10536947451fSStefano Zampini } 10546947451fSStefano Zampini a->vecinuse = col + 1; 10556947451fSStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 10566947451fSStefano Zampini ierr = MatDenseCUDAGetArray(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 10576947451fSStefano Zampini ierr = VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr); 10586947451fSStefano Zampini *v = a->cvec; 10596947451fSStefano Zampini PetscFunctionReturn(0); 10606947451fSStefano Zampini } 10616947451fSStefano Zampini 10626947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVec_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10636947451fSStefano Zampini { 10646947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10656947451fSStefano Zampini PetscErrorCode ierr; 10666947451fSStefano Zampini 10676947451fSStefano Zampini PetscFunctionBegin; 10685ea7661aSPierre Jolivet if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 10696947451fSStefano Zampini if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector"); 10706947451fSStefano Zampini a->vecinuse = 0; 10716947451fSStefano Zampini ierr = MatDenseCUDARestoreArray(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 10726947451fSStefano Zampini ierr = VecCUDAResetArray(a->cvec);CHKERRQ(ierr); 10736947451fSStefano Zampini *v = NULL; 10746947451fSStefano Zampini PetscFunctionReturn(0); 10756947451fSStefano Zampini } 10766947451fSStefano Zampini 10776947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecRead_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10786947451fSStefano Zampini { 10796947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10806947451fSStefano Zampini PetscInt lda; 10816947451fSStefano Zampini PetscErrorCode ierr; 10826947451fSStefano Zampini 10836947451fSStefano Zampini PetscFunctionBegin; 1084616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1085616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 10866947451fSStefano Zampini if (!a->cvec) { 10876947451fSStefano Zampini ierr = VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr); 1088616b8fbbSStefano Zampini ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec);CHKERRQ(ierr); 10896947451fSStefano Zampini } 10906947451fSStefano Zampini a->vecinuse = col + 1; 10916947451fSStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 10926947451fSStefano Zampini ierr = MatDenseCUDAGetArrayRead(a->A,&a->ptrinuse);CHKERRQ(ierr); 10936947451fSStefano Zampini ierr = VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr); 10946947451fSStefano Zampini ierr = VecLockReadPush(a->cvec);CHKERRQ(ierr); 10956947451fSStefano Zampini *v = a->cvec; 10966947451fSStefano Zampini PetscFunctionReturn(0); 10976947451fSStefano Zampini } 10986947451fSStefano Zampini 10996947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecRead_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 11006947451fSStefano Zampini { 11016947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 11026947451fSStefano Zampini PetscErrorCode ierr; 11036947451fSStefano Zampini 11046947451fSStefano Zampini PetscFunctionBegin; 1105616b8fbbSStefano Zampini if (!a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 1106616b8fbbSStefano Zampini if (!a->cvec) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 11076947451fSStefano Zampini a->vecinuse = 0; 11086947451fSStefano Zampini ierr = MatDenseCUDARestoreArrayRead(a->A,&a->ptrinuse);CHKERRQ(ierr); 11096947451fSStefano Zampini ierr = VecLockReadPop(a->cvec);CHKERRQ(ierr); 11106947451fSStefano Zampini ierr = VecCUDAResetArray(a->cvec);CHKERRQ(ierr); 11116947451fSStefano Zampini *v = NULL; 11126947451fSStefano Zampini PetscFunctionReturn(0); 11136947451fSStefano Zampini } 11146947451fSStefano Zampini 11156947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecWrite_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 11166947451fSStefano Zampini { 11176947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 11186947451fSStefano Zampini PetscErrorCode ierr; 11196947451fSStefano Zampini PetscInt lda; 11206947451fSStefano Zampini 11216947451fSStefano Zampini PetscFunctionBegin; 1122616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1123616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 11246947451fSStefano Zampini if (!a->cvec) { 11256947451fSStefano Zampini ierr = VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr); 1126616b8fbbSStefano Zampini ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec);CHKERRQ(ierr); 11276947451fSStefano Zampini } 11286947451fSStefano Zampini a->vecinuse = col + 1; 11296947451fSStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 11306947451fSStefano Zampini ierr = MatDenseCUDAGetArrayWrite(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 11316947451fSStefano Zampini ierr = VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr); 11326947451fSStefano Zampini *v = a->cvec; 11336947451fSStefano Zampini PetscFunctionReturn(0); 11346947451fSStefano Zampini } 11356947451fSStefano Zampini 11366947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 11376947451fSStefano Zampini { 11386947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 11396947451fSStefano Zampini PetscErrorCode ierr; 11406947451fSStefano Zampini 11416947451fSStefano Zampini PetscFunctionBegin; 1142616b8fbbSStefano Zampini if (!a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 1143616b8fbbSStefano Zampini if (!a->cvec) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 11446947451fSStefano Zampini a->vecinuse = 0; 11456947451fSStefano Zampini ierr = MatDenseCUDARestoreArrayWrite(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 11466947451fSStefano Zampini ierr = VecCUDAResetArray(a->cvec);CHKERRQ(ierr); 11476947451fSStefano Zampini *v = NULL; 11486947451fSStefano Zampini PetscFunctionReturn(0); 11496947451fSStefano Zampini } 11506947451fSStefano Zampini 1151637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAPlaceArray_MPIDenseCUDA(Mat A, const PetscScalar *a) 1152637a0070SStefano Zampini { 1153637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1154637a0070SStefano Zampini PetscErrorCode ierr; 1155637a0070SStefano Zampini 1156637a0070SStefano Zampini PetscFunctionBegin; 1157616b8fbbSStefano Zampini if (l->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1158616b8fbbSStefano Zampini if (l->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1159637a0070SStefano Zampini ierr = MatDenseCUDAPlaceArray(l->A,a);CHKERRQ(ierr); 1160637a0070SStefano Zampini PetscFunctionReturn(0); 1161637a0070SStefano Zampini } 1162637a0070SStefano Zampini 1163637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAResetArray_MPIDenseCUDA(Mat A) 1164637a0070SStefano Zampini { 1165637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1166637a0070SStefano Zampini PetscErrorCode ierr; 1167637a0070SStefano Zampini 1168637a0070SStefano Zampini PetscFunctionBegin; 1169616b8fbbSStefano Zampini if (l->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1170616b8fbbSStefano Zampini if (l->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1171637a0070SStefano Zampini ierr = MatDenseCUDAResetArray(l->A);CHKERRQ(ierr); 1172637a0070SStefano Zampini PetscFunctionReturn(0); 1173637a0070SStefano Zampini } 1174637a0070SStefano Zampini 1175d5ea218eSStefano Zampini static PetscErrorCode MatDenseCUDAReplaceArray_MPIDenseCUDA(Mat A, const PetscScalar *a) 1176d5ea218eSStefano Zampini { 1177d5ea218eSStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1178d5ea218eSStefano Zampini PetscErrorCode ierr; 1179d5ea218eSStefano Zampini 1180d5ea218eSStefano Zampini PetscFunctionBegin; 1181616b8fbbSStefano Zampini if (l->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1182616b8fbbSStefano Zampini if (l->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1183d5ea218eSStefano Zampini ierr = MatDenseCUDAReplaceArray(l->A,a);CHKERRQ(ierr); 1184d5ea218eSStefano Zampini PetscFunctionReturn(0); 1185d5ea218eSStefano Zampini } 1186d5ea218eSStefano Zampini 1187637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArrayWrite_MPIDenseCUDA(Mat A, PetscScalar **a) 1188637a0070SStefano Zampini { 1189637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1190637a0070SStefano Zampini PetscErrorCode ierr; 1191637a0070SStefano Zampini 1192637a0070SStefano Zampini PetscFunctionBegin; 1193637a0070SStefano Zampini ierr = MatDenseCUDAGetArrayWrite(l->A,a);CHKERRQ(ierr); 1194637a0070SStefano Zampini PetscFunctionReturn(0); 1195637a0070SStefano Zampini } 1196637a0070SStefano Zampini 1197637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArrayWrite_MPIDenseCUDA(Mat A, PetscScalar **a) 1198637a0070SStefano Zampini { 1199637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1200637a0070SStefano Zampini PetscErrorCode ierr; 1201637a0070SStefano Zampini 1202637a0070SStefano Zampini PetscFunctionBegin; 1203637a0070SStefano Zampini ierr = MatDenseCUDARestoreArrayWrite(l->A,a);CHKERRQ(ierr); 1204637a0070SStefano Zampini PetscFunctionReturn(0); 1205637a0070SStefano Zampini } 1206637a0070SStefano Zampini 1207637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArrayRead_MPIDenseCUDA(Mat A, const PetscScalar **a) 1208637a0070SStefano Zampini { 1209637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1210637a0070SStefano Zampini PetscErrorCode ierr; 1211637a0070SStefano Zampini 1212637a0070SStefano Zampini PetscFunctionBegin; 1213637a0070SStefano Zampini ierr = MatDenseCUDAGetArrayRead(l->A,a);CHKERRQ(ierr); 1214637a0070SStefano Zampini PetscFunctionReturn(0); 1215637a0070SStefano Zampini } 1216637a0070SStefano Zampini 1217637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArrayRead_MPIDenseCUDA(Mat A, const PetscScalar **a) 1218637a0070SStefano Zampini { 1219637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1220637a0070SStefano Zampini PetscErrorCode ierr; 1221637a0070SStefano Zampini 1222637a0070SStefano Zampini PetscFunctionBegin; 1223637a0070SStefano Zampini ierr = MatDenseCUDARestoreArrayRead(l->A,a);CHKERRQ(ierr); 1224637a0070SStefano Zampini PetscFunctionReturn(0); 1225637a0070SStefano Zampini } 1226637a0070SStefano Zampini 1227637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArray_MPIDenseCUDA(Mat A, PetscScalar **a) 1228637a0070SStefano Zampini { 1229637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1230637a0070SStefano Zampini PetscErrorCode ierr; 1231637a0070SStefano Zampini 1232637a0070SStefano Zampini PetscFunctionBegin; 1233637a0070SStefano Zampini ierr = MatDenseCUDAGetArray(l->A,a);CHKERRQ(ierr); 1234637a0070SStefano Zampini PetscFunctionReturn(0); 1235637a0070SStefano Zampini } 1236637a0070SStefano Zampini 1237637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArray_MPIDenseCUDA(Mat A, PetscScalar **a) 1238637a0070SStefano Zampini { 1239637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1240637a0070SStefano Zampini PetscErrorCode ierr; 1241637a0070SStefano Zampini 1242637a0070SStefano Zampini PetscFunctionBegin; 1243637a0070SStefano Zampini ierr = MatDenseCUDARestoreArray(l->A,a);CHKERRQ(ierr); 1244637a0070SStefano Zampini PetscFunctionReturn(0); 1245637a0070SStefano Zampini } 1246637a0070SStefano Zampini 12476947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecWrite_MPIDense(Mat,PetscInt,Vec*); 12486947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecRead_MPIDense(Mat,PetscInt,Vec*); 12496947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVec_MPIDense(Mat,PetscInt,Vec*); 12506947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDense(Mat,PetscInt,Vec*); 12516947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecRead_MPIDense(Mat,PetscInt,Vec*); 12526947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVec_MPIDense(Mat,PetscInt,Vec*); 12535ea7661aSPierre Jolivet static PetscErrorCode MatDenseRestoreSubMatrix_MPIDense(Mat,Mat*); 12546947451fSStefano Zampini 1255637a0070SStefano Zampini static PetscErrorCode MatBindToCPU_MPIDenseCUDA(Mat mat,PetscBool bind) 1256637a0070SStefano Zampini { 1257637a0070SStefano Zampini Mat_MPIDense *d = (Mat_MPIDense*)mat->data; 1258637a0070SStefano Zampini PetscErrorCode ierr; 1259637a0070SStefano Zampini 1260637a0070SStefano Zampini PetscFunctionBegin; 1261616b8fbbSStefano Zampini if (d->vecinuse) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1262616b8fbbSStefano Zampini if (d->matinuse) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1263637a0070SStefano Zampini if (d->A) { 1264637a0070SStefano Zampini ierr = MatBindToCPU(d->A,bind);CHKERRQ(ierr); 1265637a0070SStefano Zampini } 1266637a0070SStefano Zampini mat->boundtocpu = bind; 12676947451fSStefano Zampini if (!bind) { 12686947451fSStefano Zampini PetscBool iscuda; 12696947451fSStefano Zampini 12706947451fSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)d->cvec,VECMPICUDA,&iscuda);CHKERRQ(ierr); 12716947451fSStefano Zampini if (!iscuda) { 12726947451fSStefano Zampini ierr = VecDestroy(&d->cvec);CHKERRQ(ierr); 1273616b8fbbSStefano Zampini } 1274616b8fbbSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)d->cmat,MATMPIDENSECUDA,&iscuda);CHKERRQ(ierr); 1275616b8fbbSStefano Zampini if (!iscuda) { 12765ea7661aSPierre Jolivet ierr = MatDestroy(&d->cmat);CHKERRQ(ierr); 12776947451fSStefano Zampini } 12786947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDenseCUDA);CHKERRQ(ierr); 12796947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDenseCUDA);CHKERRQ(ierr); 12806947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDenseCUDA);CHKERRQ(ierr); 12816947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDenseCUDA);CHKERRQ(ierr); 12826947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDenseCUDA);CHKERRQ(ierr); 12836947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDenseCUDA);CHKERRQ(ierr); 12846947451fSStefano Zampini } else { 12856947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDense);CHKERRQ(ierr); 12866947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDense);CHKERRQ(ierr); 12876947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDense);CHKERRQ(ierr); 12886947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDense);CHKERRQ(ierr); 12896947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDense);CHKERRQ(ierr); 12906947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDense);CHKERRQ(ierr); 1291616b8fbbSStefano Zampini } 1292616b8fbbSStefano Zampini if (d->cmat) { 1293616b8fbbSStefano Zampini ierr = MatBindToCPU(d->cmat,bind);CHKERRQ(ierr); 12946947451fSStefano Zampini } 1295637a0070SStefano Zampini PetscFunctionReturn(0); 1296637a0070SStefano Zampini } 1297637a0070SStefano Zampini 1298637a0070SStefano Zampini PetscErrorCode MatMPIDenseCUDASetPreallocation(Mat A, PetscScalar *d_data) 1299637a0070SStefano Zampini { 1300637a0070SStefano Zampini Mat_MPIDense *d = (Mat_MPIDense*)A->data; 1301637a0070SStefano Zampini PetscErrorCode ierr; 1302637a0070SStefano Zampini PetscBool iscuda; 1303637a0070SStefano Zampini 1304637a0070SStefano Zampini PetscFunctionBegin; 1305d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 1306637a0070SStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIDENSECUDA,&iscuda);CHKERRQ(ierr); 1307637a0070SStefano Zampini if (!iscuda) PetscFunctionReturn(0); 1308637a0070SStefano Zampini ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr); 1309637a0070SStefano Zampini ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr); 1310637a0070SStefano Zampini if (!d->A) { 1311637a0070SStefano Zampini ierr = MatCreate(PETSC_COMM_SELF,&d->A);CHKERRQ(ierr); 1312637a0070SStefano Zampini ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)d->A);CHKERRQ(ierr); 1313637a0070SStefano Zampini ierr = MatSetSizes(d->A,A->rmap->n,A->cmap->N,A->rmap->n,A->cmap->N);CHKERRQ(ierr); 1314637a0070SStefano Zampini } 1315637a0070SStefano Zampini ierr = MatSetType(d->A,MATSEQDENSECUDA);CHKERRQ(ierr); 1316637a0070SStefano Zampini ierr = MatSeqDenseCUDASetPreallocation(d->A,d_data);CHKERRQ(ierr); 1317637a0070SStefano Zampini A->preallocated = PETSC_TRUE; 1318637a0070SStefano Zampini PetscFunctionReturn(0); 1319637a0070SStefano Zampini } 1320637a0070SStefano Zampini #endif 1321637a0070SStefano Zampini 132273a71a0fSBarry Smith static PetscErrorCode MatSetRandom_MPIDense(Mat x,PetscRandom rctx) 132373a71a0fSBarry Smith { 132473a71a0fSBarry Smith Mat_MPIDense *d = (Mat_MPIDense*)x->data; 132573a71a0fSBarry Smith PetscErrorCode ierr; 132673a71a0fSBarry Smith 132773a71a0fSBarry Smith PetscFunctionBegin; 1328637a0070SStefano Zampini ierr = MatSetRandom(d->A,rctx);CHKERRQ(ierr); 132973a71a0fSBarry Smith PetscFunctionReturn(0); 133073a71a0fSBarry Smith } 133173a71a0fSBarry Smith 13323b49f96aSBarry Smith static PetscErrorCode MatMissingDiagonal_MPIDense(Mat A,PetscBool *missing,PetscInt *d) 13333b49f96aSBarry Smith { 13343b49f96aSBarry Smith PetscFunctionBegin; 13353b49f96aSBarry Smith *missing = PETSC_FALSE; 13363b49f96aSBarry Smith PetscFunctionReturn(0); 13373b49f96aSBarry Smith } 13383b49f96aSBarry Smith 13394222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat,Mat,PetscReal,Mat); 1340cc48ffa7SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat,Mat,Mat); 13416718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat,Mat,Mat); 13426718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat,Mat,PetscReal,Mat); 13436718818eSStefano Zampini static PetscErrorCode MatEqual_MPIDense(Mat,Mat,PetscBool*); 13446718818eSStefano Zampini static PetscErrorCode MatLoad_MPIDense(Mat,PetscViewer); 1345cc48ffa7SToby Isaac 13468965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/ 134709dc0095SBarry Smith static struct _MatOps MatOps_Values = { MatSetValues_MPIDense, 134809dc0095SBarry Smith MatGetRow_MPIDense, 134909dc0095SBarry Smith MatRestoreRow_MPIDense, 135009dc0095SBarry Smith MatMult_MPIDense, 135197304618SKris Buschelman /* 4*/ MatMultAdd_MPIDense, 13527c922b88SBarry Smith MatMultTranspose_MPIDense, 13537c922b88SBarry Smith MatMultTransposeAdd_MPIDense, 1354f4259b30SLisandro Dalcin NULL, 1355f4259b30SLisandro Dalcin NULL, 1356f4259b30SLisandro Dalcin NULL, 1357f4259b30SLisandro Dalcin /* 10*/ NULL, 1358f4259b30SLisandro Dalcin NULL, 1359f4259b30SLisandro Dalcin NULL, 1360f4259b30SLisandro Dalcin NULL, 136109dc0095SBarry Smith MatTranspose_MPIDense, 136297304618SKris Buschelman /* 15*/ MatGetInfo_MPIDense, 13636e4ee0c6SHong Zhang MatEqual_MPIDense, 136409dc0095SBarry Smith MatGetDiagonal_MPIDense, 13655b2fa520SLois Curfman McInnes MatDiagonalScale_MPIDense, 136609dc0095SBarry Smith MatNorm_MPIDense, 136797304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPIDense, 136809dc0095SBarry Smith MatAssemblyEnd_MPIDense, 136909dc0095SBarry Smith MatSetOption_MPIDense, 137009dc0095SBarry Smith MatZeroEntries_MPIDense, 1371d519adbfSMatthew Knepley /* 24*/ MatZeroRows_MPIDense, 1372f4259b30SLisandro Dalcin NULL, 1373f4259b30SLisandro Dalcin NULL, 1374f4259b30SLisandro Dalcin NULL, 1375f4259b30SLisandro Dalcin NULL, 13764994cf47SJed Brown /* 29*/ MatSetUp_MPIDense, 1377f4259b30SLisandro Dalcin NULL, 1378f4259b30SLisandro Dalcin NULL, 1379c56a70eeSBarry Smith MatGetDiagonalBlock_MPIDense, 1380f4259b30SLisandro Dalcin NULL, 1381d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPIDense, 1382f4259b30SLisandro Dalcin NULL, 1383f4259b30SLisandro Dalcin NULL, 1384f4259b30SLisandro Dalcin NULL, 1385f4259b30SLisandro Dalcin NULL, 1386d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPIDense, 13877dae84e0SHong Zhang MatCreateSubMatrices_MPIDense, 1388f4259b30SLisandro Dalcin NULL, 138909dc0095SBarry Smith MatGetValues_MPIDense, 1390f4259b30SLisandro Dalcin NULL, 1391f4259b30SLisandro Dalcin /* 44*/ NULL, 139209dc0095SBarry Smith MatScale_MPIDense, 13937d68702bSBarry Smith MatShift_Basic, 1394f4259b30SLisandro Dalcin NULL, 1395f4259b30SLisandro Dalcin NULL, 139673a71a0fSBarry Smith /* 49*/ MatSetRandom_MPIDense, 1397f4259b30SLisandro Dalcin NULL, 1398f4259b30SLisandro Dalcin NULL, 1399f4259b30SLisandro Dalcin NULL, 1400f4259b30SLisandro Dalcin NULL, 1401f4259b30SLisandro Dalcin /* 54*/ NULL, 1402f4259b30SLisandro Dalcin NULL, 1403f4259b30SLisandro Dalcin NULL, 1404f4259b30SLisandro Dalcin NULL, 1405f4259b30SLisandro Dalcin NULL, 14067dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPIDense, 1407b9b97703SBarry Smith MatDestroy_MPIDense, 1408b9b97703SBarry Smith MatView_MPIDense, 1409f4259b30SLisandro Dalcin NULL, 1410f4259b30SLisandro Dalcin NULL, 1411f4259b30SLisandro Dalcin /* 64*/ NULL, 1412f4259b30SLisandro Dalcin NULL, 1413f4259b30SLisandro Dalcin NULL, 1414f4259b30SLisandro Dalcin NULL, 1415f4259b30SLisandro Dalcin NULL, 1416f4259b30SLisandro Dalcin /* 69*/ NULL, 1417f4259b30SLisandro Dalcin NULL, 1418f4259b30SLisandro Dalcin NULL, 1419f4259b30SLisandro Dalcin NULL, 1420f4259b30SLisandro Dalcin NULL, 1421f4259b30SLisandro Dalcin /* 74*/ NULL, 1422f4259b30SLisandro Dalcin NULL, 1423f4259b30SLisandro Dalcin NULL, 1424f4259b30SLisandro Dalcin NULL, 1425f4259b30SLisandro Dalcin NULL, 1426f4259b30SLisandro Dalcin /* 79*/ NULL, 1427f4259b30SLisandro Dalcin NULL, 1428f4259b30SLisandro Dalcin NULL, 1429f4259b30SLisandro Dalcin NULL, 14305bba2384SShri Abhyankar /* 83*/ MatLoad_MPIDense, 1431f4259b30SLisandro Dalcin NULL, 1432f4259b30SLisandro Dalcin NULL, 1433f4259b30SLisandro Dalcin NULL, 1434f4259b30SLisandro Dalcin NULL, 1435f4259b30SLisandro Dalcin NULL, 1436f4259b30SLisandro Dalcin /* 89*/ NULL, 1437f4259b30SLisandro Dalcin NULL, 1438f4259b30SLisandro Dalcin NULL, 1439f4259b30SLisandro Dalcin NULL, 1440f4259b30SLisandro Dalcin NULL, 1441f4259b30SLisandro Dalcin /* 94*/ NULL, 1442f4259b30SLisandro Dalcin NULL, 14436718818eSStefano Zampini MatMatTransposeMultSymbolic_MPIDense_MPIDense, 1444cc48ffa7SToby Isaac MatMatTransposeMultNumeric_MPIDense_MPIDense, 1445f4259b30SLisandro Dalcin NULL, 14464222ddf1SHong Zhang /* 99*/ MatProductSetFromOptions_MPIDense, 1447f4259b30SLisandro Dalcin NULL, 1448f4259b30SLisandro Dalcin NULL, 1449ba337c44SJed Brown MatConjugate_MPIDense, 1450f4259b30SLisandro Dalcin NULL, 1451f4259b30SLisandro Dalcin /*104*/ NULL, 1452ba337c44SJed Brown MatRealPart_MPIDense, 1453ba337c44SJed Brown MatImaginaryPart_MPIDense, 1454f4259b30SLisandro Dalcin NULL, 1455f4259b30SLisandro Dalcin NULL, 1456f4259b30SLisandro Dalcin /*109*/ NULL, 1457f4259b30SLisandro Dalcin NULL, 1458f4259b30SLisandro Dalcin NULL, 145949a6ff4bSBarry Smith MatGetColumnVector_MPIDense, 14603b49f96aSBarry Smith MatMissingDiagonal_MPIDense, 1461f4259b30SLisandro Dalcin /*114*/ NULL, 1462f4259b30SLisandro Dalcin NULL, 1463f4259b30SLisandro Dalcin NULL, 1464f4259b30SLisandro Dalcin NULL, 1465f4259b30SLisandro Dalcin NULL, 1466f4259b30SLisandro Dalcin /*119*/ NULL, 1467f4259b30SLisandro Dalcin NULL, 1468f4259b30SLisandro Dalcin NULL, 1469f4259b30SLisandro Dalcin NULL, 1470f4259b30SLisandro Dalcin NULL, 1471f4259b30SLisandro Dalcin /*124*/ NULL, 14723964eb88SJed Brown MatGetColumnNorms_MPIDense, 1473f4259b30SLisandro Dalcin NULL, 1474f4259b30SLisandro Dalcin NULL, 1475f4259b30SLisandro Dalcin NULL, 1476f4259b30SLisandro Dalcin /*129*/ NULL, 1477f4259b30SLisandro Dalcin NULL, 14786718818eSStefano Zampini MatTransposeMatMultSymbolic_MPIDense_MPIDense, 1479cb20be35SHong Zhang MatTransposeMatMultNumeric_MPIDense_MPIDense, 1480f4259b30SLisandro Dalcin NULL, 1481f4259b30SLisandro Dalcin /*134*/ NULL, 1482f4259b30SLisandro Dalcin NULL, 1483f4259b30SLisandro Dalcin NULL, 1484f4259b30SLisandro Dalcin NULL, 1485f4259b30SLisandro Dalcin NULL, 1486f4259b30SLisandro Dalcin /*139*/ NULL, 1487f4259b30SLisandro Dalcin NULL, 1488f4259b30SLisandro Dalcin NULL, 1489f4259b30SLisandro Dalcin NULL, 1490f4259b30SLisandro Dalcin NULL, 14914222ddf1SHong Zhang MatCreateMPIMatConcatenateSeqMat_MPIDense, 1492f4259b30SLisandro Dalcin /*145*/ NULL, 1493f4259b30SLisandro Dalcin NULL, 1494f4259b30SLisandro Dalcin NULL 1495ba337c44SJed Brown }; 14968965ea79SLois Curfman McInnes 14977087cfbeSBarry Smith PetscErrorCode MatMPIDenseSetPreallocation_MPIDense(Mat mat,PetscScalar *data) 1498a23d5eceSKris Buschelman { 1499637a0070SStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)mat->data; 1500637a0070SStefano Zampini PetscBool iscuda; 1501dfbe8321SBarry Smith PetscErrorCode ierr; 1502a23d5eceSKris Buschelman 1503a23d5eceSKris Buschelman PetscFunctionBegin; 1504616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 150534ef9618SShri Abhyankar ierr = PetscLayoutSetUp(mat->rmap);CHKERRQ(ierr); 150634ef9618SShri Abhyankar ierr = PetscLayoutSetUp(mat->cmap);CHKERRQ(ierr); 1507637a0070SStefano Zampini if (!a->A) { 1508f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&a->A);CHKERRQ(ierr); 15093bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 1510637a0070SStefano Zampini ierr = MatSetSizes(a->A,mat->rmap->n,mat->cmap->N,mat->rmap->n,mat->cmap->N);CHKERRQ(ierr); 1511637a0070SStefano Zampini } 1512637a0070SStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)mat,MATMPIDENSECUDA,&iscuda);CHKERRQ(ierr); 1513637a0070SStefano Zampini ierr = MatSetType(a->A,iscuda ? MATSEQDENSECUDA : MATSEQDENSE);CHKERRQ(ierr); 1514637a0070SStefano Zampini ierr = MatSeqDenseSetPreallocation(a->A,data);CHKERRQ(ierr); 1515637a0070SStefano Zampini mat->preallocated = PETSC_TRUE; 1516a23d5eceSKris Buschelman PetscFunctionReturn(0); 1517a23d5eceSKris Buschelman } 1518a23d5eceSKris Buschelman 151965b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 1520cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIDense_Elemental(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 15218baccfbdSHong Zhang { 15228ea901baSHong Zhang Mat mat_elemental; 15238ea901baSHong Zhang PetscErrorCode ierr; 152432d7a744SHong Zhang PetscScalar *v; 152532d7a744SHong Zhang PetscInt m=A->rmap->n,N=A->cmap->N,rstart=A->rmap->rstart,i,*rows,*cols; 15268ea901baSHong Zhang 15278baccfbdSHong Zhang PetscFunctionBegin; 1528378336b6SHong Zhang if (reuse == MAT_REUSE_MATRIX) { 1529378336b6SHong Zhang mat_elemental = *newmat; 1530378336b6SHong Zhang ierr = MatZeroEntries(*newmat);CHKERRQ(ierr); 1531378336b6SHong Zhang } else { 1532378336b6SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental);CHKERRQ(ierr); 1533378336b6SHong Zhang ierr = MatSetSizes(mat_elemental,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 1534378336b6SHong Zhang ierr = MatSetType(mat_elemental,MATELEMENTAL);CHKERRQ(ierr); 1535378336b6SHong Zhang ierr = MatSetUp(mat_elemental);CHKERRQ(ierr); 153632d7a744SHong Zhang ierr = MatSetOption(mat_elemental,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 1537378336b6SHong Zhang } 1538378336b6SHong Zhang 153932d7a744SHong Zhang ierr = PetscMalloc2(m,&rows,N,&cols);CHKERRQ(ierr); 154032d7a744SHong Zhang for (i=0; i<N; i++) cols[i] = i; 154132d7a744SHong Zhang for (i=0; i<m; i++) rows[i] = rstart + i; 15428ea901baSHong Zhang 1543637a0070SStefano Zampini /* PETSc-Elemental interface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */ 154432d7a744SHong Zhang ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr); 154532d7a744SHong Zhang ierr = MatSetValues(mat_elemental,m,rows,N,cols,v,ADD_VALUES);CHKERRQ(ierr); 15468ea901baSHong Zhang ierr = MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 15478ea901baSHong Zhang ierr = MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 154832d7a744SHong Zhang ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr); 154932d7a744SHong Zhang ierr = PetscFree2(rows,cols);CHKERRQ(ierr); 15508ea901baSHong Zhang 1551511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 155228be2f97SBarry Smith ierr = MatHeaderReplace(A,&mat_elemental);CHKERRQ(ierr); 15538ea901baSHong Zhang } else { 15548ea901baSHong Zhang *newmat = mat_elemental; 15558ea901baSHong Zhang } 15568baccfbdSHong Zhang PetscFunctionReturn(0); 15578baccfbdSHong Zhang } 155865b80a83SHong Zhang #endif 15598baccfbdSHong Zhang 1560af53bab2SHong Zhang static PetscErrorCode MatDenseGetColumn_MPIDense(Mat A,PetscInt col,PetscScalar **vals) 156186aefd0dSHong Zhang { 156286aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 156386aefd0dSHong Zhang PetscErrorCode ierr; 156486aefd0dSHong Zhang 156586aefd0dSHong Zhang PetscFunctionBegin; 156686aefd0dSHong Zhang ierr = MatDenseGetColumn(mat->A,col,vals);CHKERRQ(ierr); 156786aefd0dSHong Zhang PetscFunctionReturn(0); 156886aefd0dSHong Zhang } 156986aefd0dSHong Zhang 1570af53bab2SHong Zhang static PetscErrorCode MatDenseRestoreColumn_MPIDense(Mat A,PetscScalar **vals) 157186aefd0dSHong Zhang { 157286aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 157386aefd0dSHong Zhang PetscErrorCode ierr; 157486aefd0dSHong Zhang 157586aefd0dSHong Zhang PetscFunctionBegin; 157686aefd0dSHong Zhang ierr = MatDenseRestoreColumn(mat->A,vals);CHKERRQ(ierr); 157786aefd0dSHong Zhang PetscFunctionReturn(0); 157886aefd0dSHong Zhang } 157986aefd0dSHong Zhang 158094e2cb23SJakub Kruzik PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIDense(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 158194e2cb23SJakub Kruzik { 158294e2cb23SJakub Kruzik PetscErrorCode ierr; 158394e2cb23SJakub Kruzik Mat_MPIDense *mat; 158494e2cb23SJakub Kruzik PetscInt m,nloc,N; 158594e2cb23SJakub Kruzik 158694e2cb23SJakub Kruzik PetscFunctionBegin; 158794e2cb23SJakub Kruzik ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr); 158894e2cb23SJakub Kruzik ierr = MatGetLocalSize(inmat,NULL,&nloc);CHKERRQ(ierr); 158994e2cb23SJakub Kruzik if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 159094e2cb23SJakub Kruzik PetscInt sum; 159194e2cb23SJakub Kruzik 159294e2cb23SJakub Kruzik if (n == PETSC_DECIDE) { 159394e2cb23SJakub Kruzik ierr = PetscSplitOwnership(comm,&n,&N);CHKERRQ(ierr); 159494e2cb23SJakub Kruzik } 159594e2cb23SJakub Kruzik /* Check sum(n) = N */ 159694e2cb23SJakub Kruzik ierr = MPIU_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 159794e2cb23SJakub Kruzik if (sum != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns %D != global columns %D",sum,N); 159894e2cb23SJakub Kruzik 159994e2cb23SJakub Kruzik ierr = MatCreateDense(comm,m,n,PETSC_DETERMINE,N,NULL,outmat);CHKERRQ(ierr); 160094e2cb23SJakub Kruzik } 160194e2cb23SJakub Kruzik 160294e2cb23SJakub Kruzik /* numeric phase */ 160394e2cb23SJakub Kruzik mat = (Mat_MPIDense*)(*outmat)->data; 160494e2cb23SJakub Kruzik ierr = MatCopy(inmat,mat->A,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 160594e2cb23SJakub Kruzik ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 160694e2cb23SJakub Kruzik ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 160794e2cb23SJakub Kruzik PetscFunctionReturn(0); 160894e2cb23SJakub Kruzik } 160994e2cb23SJakub Kruzik 1610637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1611637a0070SStefano Zampini PetscErrorCode MatConvert_MPIDenseCUDA_MPIDense(Mat M,MatType type,MatReuse reuse,Mat *newmat) 1612637a0070SStefano Zampini { 1613637a0070SStefano Zampini Mat B; 1614637a0070SStefano Zampini Mat_MPIDense *m; 1615637a0070SStefano Zampini PetscErrorCode ierr; 1616637a0070SStefano Zampini 1617637a0070SStefano Zampini PetscFunctionBegin; 1618637a0070SStefano Zampini if (reuse == MAT_INITIAL_MATRIX) { 1619637a0070SStefano Zampini ierr = MatDuplicate(M,MAT_COPY_VALUES,newmat);CHKERRQ(ierr); 1620637a0070SStefano Zampini } else if (reuse == MAT_REUSE_MATRIX) { 1621637a0070SStefano Zampini ierr = MatCopy(M,*newmat,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 1622637a0070SStefano Zampini } 1623637a0070SStefano Zampini 1624637a0070SStefano Zampini B = *newmat; 1625637a0070SStefano Zampini ierr = MatBindToCPU_MPIDenseCUDA(B,PETSC_TRUE);CHKERRQ(ierr); 1626637a0070SStefano Zampini ierr = PetscFree(B->defaultvectype);CHKERRQ(ierr); 1627637a0070SStefano Zampini ierr = PetscStrallocpy(VECSTANDARD,&B->defaultvectype);CHKERRQ(ierr); 1628637a0070SStefano Zampini ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIDENSE);CHKERRQ(ierr); 1629637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpidensecuda_mpidense_C",NULL);CHKERRQ(ierr); 1630637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaij_mpidensecuda_C",NULL);CHKERRQ(ierr); 16316718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaijcusparse_mpidensecuda_C",NULL);CHKERRQ(ierr); 1632637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaij_C",NULL);CHKERRQ(ierr); 16336718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaijcusparse_C",NULL);CHKERRQ(ierr); 1634637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArray_C",NULL);CHKERRQ(ierr); 1635637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayRead_C",NULL);CHKERRQ(ierr); 1636637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayWrite_C",NULL);CHKERRQ(ierr); 1637637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArray_C",NULL);CHKERRQ(ierr); 1638637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayRead_C",NULL);CHKERRQ(ierr); 1639637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayWrite_C",NULL);CHKERRQ(ierr); 1640637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAPlaceArray_C",NULL);CHKERRQ(ierr); 1641637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAResetArray_C",NULL);CHKERRQ(ierr); 1642d5ea218eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAReplaceArray_C",NULL);CHKERRQ(ierr); 1643637a0070SStefano Zampini m = (Mat_MPIDense*)(B)->data; 1644637a0070SStefano Zampini if (m->A) { 1645637a0070SStefano Zampini ierr = MatConvert(m->A,MATSEQDENSE,MAT_INPLACE_MATRIX,&m->A);CHKERRQ(ierr); 1646637a0070SStefano Zampini ierr = MatSetUpMultiply_MPIDense(B);CHKERRQ(ierr); 1647637a0070SStefano Zampini } 1648637a0070SStefano Zampini B->ops->bindtocpu = NULL; 1649637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_CPU; 1650637a0070SStefano Zampini PetscFunctionReturn(0); 1651637a0070SStefano Zampini } 1652637a0070SStefano Zampini 1653637a0070SStefano Zampini PetscErrorCode MatConvert_MPIDense_MPIDenseCUDA(Mat M,MatType type,MatReuse reuse,Mat *newmat) 1654637a0070SStefano Zampini { 1655637a0070SStefano Zampini Mat B; 1656637a0070SStefano Zampini Mat_MPIDense *m; 1657637a0070SStefano Zampini PetscErrorCode ierr; 1658637a0070SStefano Zampini 1659637a0070SStefano Zampini PetscFunctionBegin; 1660637a0070SStefano Zampini if (reuse == MAT_INITIAL_MATRIX) { 1661637a0070SStefano Zampini ierr = MatDuplicate(M,MAT_COPY_VALUES,newmat);CHKERRQ(ierr); 1662637a0070SStefano Zampini } else if (reuse == MAT_REUSE_MATRIX) { 1663637a0070SStefano Zampini ierr = MatCopy(M,*newmat,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 1664637a0070SStefano Zampini } 1665637a0070SStefano Zampini 1666637a0070SStefano Zampini B = *newmat; 1667637a0070SStefano Zampini ierr = PetscFree(B->defaultvectype);CHKERRQ(ierr); 1668637a0070SStefano Zampini ierr = PetscStrallocpy(VECCUDA,&B->defaultvectype);CHKERRQ(ierr); 1669637a0070SStefano Zampini ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIDENSECUDA);CHKERRQ(ierr); 1670637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpidensecuda_mpidense_C", MatConvert_MPIDenseCUDA_MPIDense);CHKERRQ(ierr); 1671637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaij_mpidensecuda_C", MatProductSetFromOptions_MPIAIJ_MPIDense);CHKERRQ(ierr); 16726718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaijcusparse_mpidensecuda_C",MatProductSetFromOptions_MPIAIJ_MPIDense);CHKERRQ(ierr); 1673637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaij_C", MatProductSetFromOptions_MPIDense_MPIAIJ);CHKERRQ(ierr); 16746718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaijcusparse_C",MatProductSetFromOptions_MPIDense_MPIAIJ);CHKERRQ(ierr); 1675637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArray_C", MatDenseCUDAGetArray_MPIDenseCUDA);CHKERRQ(ierr); 1676637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayRead_C", MatDenseCUDAGetArrayRead_MPIDenseCUDA);CHKERRQ(ierr); 1677637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayWrite_C", MatDenseCUDAGetArrayWrite_MPIDenseCUDA);CHKERRQ(ierr); 1678637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArray_C", MatDenseCUDARestoreArray_MPIDenseCUDA);CHKERRQ(ierr); 1679637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayRead_C", MatDenseCUDARestoreArrayRead_MPIDenseCUDA);CHKERRQ(ierr); 1680637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayWrite_C", MatDenseCUDARestoreArrayWrite_MPIDenseCUDA);CHKERRQ(ierr); 1681637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAPlaceArray_C", MatDenseCUDAPlaceArray_MPIDenseCUDA);CHKERRQ(ierr); 1682637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAResetArray_C", MatDenseCUDAResetArray_MPIDenseCUDA);CHKERRQ(ierr); 1683d5ea218eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAReplaceArray_C", MatDenseCUDAReplaceArray_MPIDenseCUDA);CHKERRQ(ierr); 1684637a0070SStefano Zampini m = (Mat_MPIDense*)(B)->data; 1685637a0070SStefano Zampini if (m->A) { 1686637a0070SStefano Zampini ierr = MatConvert(m->A,MATSEQDENSECUDA,MAT_INPLACE_MATRIX,&m->A);CHKERRQ(ierr); 1687637a0070SStefano Zampini ierr = MatSetUpMultiply_MPIDense(B);CHKERRQ(ierr); 1688637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_BOTH; 1689637a0070SStefano Zampini } else { 1690637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_UNALLOCATED; 1691637a0070SStefano Zampini } 1692637a0070SStefano Zampini ierr = MatBindToCPU_MPIDenseCUDA(B,PETSC_FALSE);CHKERRQ(ierr); 1693637a0070SStefano Zampini 1694637a0070SStefano Zampini B->ops->bindtocpu = MatBindToCPU_MPIDenseCUDA; 1695637a0070SStefano Zampini PetscFunctionReturn(0); 1696637a0070SStefano Zampini } 1697637a0070SStefano Zampini #endif 1698637a0070SStefano Zampini 16996947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVec_MPIDense(Mat A,PetscInt col,Vec *v) 17006947451fSStefano Zampini { 17016947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17026947451fSStefano Zampini PetscErrorCode ierr; 17036947451fSStefano Zampini PetscInt lda; 17046947451fSStefano Zampini 17056947451fSStefano Zampini PetscFunctionBegin; 1706616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1707616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 17086947451fSStefano Zampini if (!a->cvec) { 17096947451fSStefano Zampini ierr = VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr); 17106947451fSStefano Zampini } 17116947451fSStefano Zampini a->vecinuse = col + 1; 17126947451fSStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 17136947451fSStefano Zampini ierr = MatDenseGetArray(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 17146947451fSStefano Zampini ierr = VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr); 17156947451fSStefano Zampini *v = a->cvec; 17166947451fSStefano Zampini PetscFunctionReturn(0); 17176947451fSStefano Zampini } 17186947451fSStefano Zampini 17196947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVec_MPIDense(Mat A,PetscInt col,Vec *v) 17206947451fSStefano Zampini { 17216947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17226947451fSStefano Zampini PetscErrorCode ierr; 17236947451fSStefano Zampini 17246947451fSStefano Zampini PetscFunctionBegin; 17255ea7661aSPierre Jolivet if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 17266947451fSStefano Zampini if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector"); 17276947451fSStefano Zampini a->vecinuse = 0; 17286947451fSStefano Zampini ierr = MatDenseRestoreArray(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 17296947451fSStefano Zampini ierr = VecResetArray(a->cvec);CHKERRQ(ierr); 17306947451fSStefano Zampini *v = NULL; 17316947451fSStefano Zampini PetscFunctionReturn(0); 17326947451fSStefano Zampini } 17336947451fSStefano Zampini 17346947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecRead_MPIDense(Mat A,PetscInt col,Vec *v) 17356947451fSStefano Zampini { 17366947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17376947451fSStefano Zampini PetscErrorCode ierr; 17386947451fSStefano Zampini PetscInt lda; 17396947451fSStefano Zampini 17406947451fSStefano Zampini PetscFunctionBegin; 1741616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1742616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 17436947451fSStefano Zampini if (!a->cvec) { 17446947451fSStefano Zampini ierr = VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr); 17456947451fSStefano Zampini } 17466947451fSStefano Zampini a->vecinuse = col + 1; 17476947451fSStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 17486947451fSStefano Zampini ierr = MatDenseGetArrayRead(a->A,&a->ptrinuse);CHKERRQ(ierr); 17496947451fSStefano Zampini ierr = VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr); 17506947451fSStefano Zampini ierr = VecLockReadPush(a->cvec);CHKERRQ(ierr); 17516947451fSStefano Zampini *v = a->cvec; 17526947451fSStefano Zampini PetscFunctionReturn(0); 17536947451fSStefano Zampini } 17546947451fSStefano Zampini 17556947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecRead_MPIDense(Mat A,PetscInt col,Vec *v) 17566947451fSStefano Zampini { 17576947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17586947451fSStefano Zampini PetscErrorCode ierr; 17596947451fSStefano Zampini 17606947451fSStefano Zampini PetscFunctionBegin; 1761616b8fbbSStefano Zampini if (!a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 1762616b8fbbSStefano Zampini if (!a->cvec) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 17636947451fSStefano Zampini a->vecinuse = 0; 17646947451fSStefano Zampini ierr = MatDenseRestoreArrayRead(a->A,&a->ptrinuse);CHKERRQ(ierr); 17656947451fSStefano Zampini ierr = VecLockReadPop(a->cvec);CHKERRQ(ierr); 17666947451fSStefano Zampini ierr = VecResetArray(a->cvec);CHKERRQ(ierr); 17676947451fSStefano Zampini *v = NULL; 17686947451fSStefano Zampini PetscFunctionReturn(0); 17696947451fSStefano Zampini } 17706947451fSStefano Zampini 17716947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecWrite_MPIDense(Mat A,PetscInt col,Vec *v) 17726947451fSStefano Zampini { 17736947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17746947451fSStefano Zampini PetscErrorCode ierr; 17756947451fSStefano Zampini PetscInt lda; 17766947451fSStefano Zampini 17776947451fSStefano Zampini PetscFunctionBegin; 1778616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1779616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 17806947451fSStefano Zampini if (!a->cvec) { 17816947451fSStefano Zampini ierr = VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr); 17826947451fSStefano Zampini } 17836947451fSStefano Zampini a->vecinuse = col + 1; 17846947451fSStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 17856947451fSStefano Zampini ierr = MatDenseGetArrayWrite(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 17866947451fSStefano Zampini ierr = VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr); 17876947451fSStefano Zampini *v = a->cvec; 17886947451fSStefano Zampini PetscFunctionReturn(0); 17896947451fSStefano Zampini } 17906947451fSStefano Zampini 17916947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDense(Mat A,PetscInt col,Vec *v) 17926947451fSStefano Zampini { 17936947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17946947451fSStefano Zampini PetscErrorCode ierr; 17956947451fSStefano Zampini 17966947451fSStefano Zampini PetscFunctionBegin; 1797616b8fbbSStefano Zampini if (!a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 1798616b8fbbSStefano Zampini if (!a->cvec) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 17996947451fSStefano Zampini a->vecinuse = 0; 18006947451fSStefano Zampini ierr = MatDenseRestoreArrayWrite(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 18016947451fSStefano Zampini ierr = VecResetArray(a->cvec);CHKERRQ(ierr); 18026947451fSStefano Zampini *v = NULL; 18036947451fSStefano Zampini PetscFunctionReturn(0); 18046947451fSStefano Zampini } 18056947451fSStefano Zampini 18065ea7661aSPierre Jolivet PetscErrorCode MatDenseGetSubMatrix_MPIDense(Mat A,PetscInt cbegin,PetscInt cend,Mat *v) 18075ea7661aSPierre Jolivet { 18085ea7661aSPierre Jolivet Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1809616b8fbbSStefano Zampini Mat_MPIDense *c; 18105ea7661aSPierre Jolivet PetscErrorCode ierr; 1811616b8fbbSStefano Zampini MPI_Comm comm; 1812616b8fbbSStefano Zampini PetscBool setup = PETSC_FALSE; 18135ea7661aSPierre Jolivet 18145ea7661aSPierre Jolivet PetscFunctionBegin; 1815616b8fbbSStefano Zampini ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 1816616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(comm,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1817616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(comm,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 18185ea7661aSPierre Jolivet if (!a->cmat) { 1819616b8fbbSStefano Zampini setup = PETSC_TRUE; 1820616b8fbbSStefano Zampini ierr = MatCreate(comm,&a->cmat);CHKERRQ(ierr); 1821616b8fbbSStefano Zampini ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)a->cmat);CHKERRQ(ierr); 1822616b8fbbSStefano Zampini ierr = MatSetType(a->cmat,((PetscObject)A)->type_name);CHKERRQ(ierr); 1823616b8fbbSStefano Zampini ierr = PetscLayoutReference(A->rmap,&a->cmat->rmap);CHKERRQ(ierr); 1824616b8fbbSStefano Zampini ierr = PetscLayoutSetSize(a->cmat->cmap,cend-cbegin);CHKERRQ(ierr); 1825616b8fbbSStefano Zampini ierr = PetscLayoutSetUp(a->cmat->cmap);CHKERRQ(ierr); 1826616b8fbbSStefano Zampini } else if (cend-cbegin != a->cmat->cmap->N) { 1827616b8fbbSStefano Zampini setup = PETSC_TRUE; 1828616b8fbbSStefano Zampini ierr = PetscLayoutDestroy(&a->cmat->cmap);CHKERRQ(ierr); 1829616b8fbbSStefano Zampini ierr = PetscLayoutCreate(comm,&a->cmat->cmap);CHKERRQ(ierr); 1830616b8fbbSStefano Zampini ierr = PetscLayoutSetSize(a->cmat->cmap,cend-cbegin);CHKERRQ(ierr); 1831616b8fbbSStefano Zampini ierr = PetscLayoutSetUp(a->cmat->cmap);CHKERRQ(ierr); 18325ea7661aSPierre Jolivet } 1833616b8fbbSStefano Zampini c = (Mat_MPIDense*)a->cmat->data; 1834616b8fbbSStefano Zampini if (c->A) SETERRQ(comm,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1835616b8fbbSStefano Zampini ierr = MatDenseGetSubMatrix(a->A,cbegin,cend,&c->A);CHKERRQ(ierr); 1836616b8fbbSStefano Zampini if (setup) { /* do we really need this? */ 1837616b8fbbSStefano Zampini ierr = MatSetUpMultiply_MPIDense(a->cmat);CHKERRQ(ierr); 1838616b8fbbSStefano Zampini } 1839616b8fbbSStefano Zampini a->cmat->preallocated = PETSC_TRUE; 1840616b8fbbSStefano Zampini a->cmat->assembled = PETSC_TRUE; 18415ea7661aSPierre Jolivet a->matinuse = cbegin + 1; 18425ea7661aSPierre Jolivet *v = a->cmat; 18435ea7661aSPierre Jolivet PetscFunctionReturn(0); 18445ea7661aSPierre Jolivet } 18455ea7661aSPierre Jolivet 18465ea7661aSPierre Jolivet PetscErrorCode MatDenseRestoreSubMatrix_MPIDense(Mat A,Mat *v) 18475ea7661aSPierre Jolivet { 18485ea7661aSPierre Jolivet Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1849616b8fbbSStefano Zampini Mat_MPIDense *c; 18505ea7661aSPierre Jolivet PetscErrorCode ierr; 18515ea7661aSPierre Jolivet 18525ea7661aSPierre Jolivet PetscFunctionBegin; 1853616b8fbbSStefano Zampini if (!a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetSubMatrix() first"); 1854616b8fbbSStefano Zampini if (!a->cmat) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal matrix"); 1855616b8fbbSStefano Zampini if (*v != a->cmat) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Not the matrix obtained from MatDenseGetSubMatrix()"); 18565ea7661aSPierre Jolivet a->matinuse = 0; 1857616b8fbbSStefano Zampini c = (Mat_MPIDense*)a->cmat->data; 1858616b8fbbSStefano Zampini ierr = MatDenseRestoreSubMatrix(a->A,&c->A);CHKERRQ(ierr); 18595ea7661aSPierre Jolivet *v = NULL; 18605ea7661aSPierre Jolivet PetscFunctionReturn(0); 18615ea7661aSPierre Jolivet } 18625ea7661aSPierre Jolivet 1863*002bc6daSRichard Tran Mills /*MC 1864*002bc6daSRichard Tran Mills MATMPIDENSE - MATMPIDENSE = "mpidense" - A matrix type to be used for distributed dense matrices. 1865*002bc6daSRichard Tran Mills 1866*002bc6daSRichard Tran Mills Options Database Keys: 1867*002bc6daSRichard Tran Mills . -mat_type mpidense - sets the matrix type to "mpidense" during a call to MatSetFromOptions() 1868*002bc6daSRichard Tran Mills 1869*002bc6daSRichard Tran Mills Level: beginner 1870*002bc6daSRichard Tran Mills 1871*002bc6daSRichard Tran Mills .seealso: MatCreateDense() 1872*002bc6daSRichard Tran Mills 1873*002bc6daSRichard Tran Mills M*/ 18748cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIDense(Mat mat) 1875273d9f13SBarry Smith { 1876273d9f13SBarry Smith Mat_MPIDense *a; 1877dfbe8321SBarry Smith PetscErrorCode ierr; 1878273d9f13SBarry Smith 1879273d9f13SBarry Smith PetscFunctionBegin; 1880b00a9115SJed Brown ierr = PetscNewLog(mat,&a);CHKERRQ(ierr); 1881b0a32e0cSBarry Smith mat->data = (void*)a; 1882273d9f13SBarry Smith ierr = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1883273d9f13SBarry Smith 1884273d9f13SBarry Smith mat->insertmode = NOT_SET_VALUES; 1885273d9f13SBarry Smith 1886273d9f13SBarry Smith /* build cache for off array entries formed */ 1887273d9f13SBarry Smith a->donotstash = PETSC_FALSE; 18882205254eSKarl Rupp 1889ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)mat),1,&mat->stash);CHKERRQ(ierr); 1890273d9f13SBarry Smith 1891273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 1892f4259b30SLisandro Dalcin a->lvec = NULL; 1893f4259b30SLisandro Dalcin a->Mvctx = NULL; 1894273d9f13SBarry Smith a->roworiented = PETSC_TRUE; 1895273d9f13SBarry Smith 189649a6ff4bSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",MatDenseGetLDA_MPIDense);CHKERRQ(ierr); 1897ad16ce7aSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseSetLDA_C",MatDenseSetLDA_MPIDense);CHKERRQ(ierr); 1898bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",MatDenseGetArray_MPIDense);CHKERRQ(ierr); 18998572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",MatDenseRestoreArray_MPIDense);CHKERRQ(ierr); 19008572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",MatDenseGetArrayRead_MPIDense);CHKERRQ(ierr); 19018572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",MatDenseRestoreArrayRead_MPIDense);CHKERRQ(ierr); 19026947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayWrite_C",MatDenseGetArrayWrite_MPIDense);CHKERRQ(ierr); 19036947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayWrite_C",MatDenseRestoreArrayWrite_MPIDense);CHKERRQ(ierr); 1904d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",MatDensePlaceArray_MPIDense);CHKERRQ(ierr); 1905d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",MatDenseResetArray_MPIDense);CHKERRQ(ierr); 1906d5ea218eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseReplaceArray_C",MatDenseReplaceArray_MPIDense);CHKERRQ(ierr); 19076947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDense);CHKERRQ(ierr); 19086947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDense);CHKERRQ(ierr); 19096947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDense);CHKERRQ(ierr); 19106947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDense);CHKERRQ(ierr); 19116947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDense);CHKERRQ(ierr); 19126947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDense);CHKERRQ(ierr); 19135ea7661aSPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetSubMatrix_C",MatDenseGetSubMatrix_MPIDense);CHKERRQ(ierr); 19145ea7661aSPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreSubMatrix_C",MatDenseRestoreSubMatrix_MPIDense);CHKERRQ(ierr); 19158baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 19168baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",MatConvert_MPIDense_Elemental);CHKERRQ(ierr); 19178baccfbdSHong Zhang #endif 1918d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 1919d24d4204SJose E. Roman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_scalapack_C",MatConvert_Dense_ScaLAPACK);CHKERRQ(ierr); 1920d24d4204SJose E. Roman #endif 1921637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1922637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_mpidensecuda_C",MatConvert_MPIDense_MPIDenseCUDA);CHKERRQ(ierr); 1923637a0070SStefano Zampini #endif 1924bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",MatMPIDenseSetPreallocation_MPIDense);CHKERRQ(ierr); 19254222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaij_mpidense_C",MatProductSetFromOptions_MPIAIJ_MPIDense);CHKERRQ(ierr); 19264222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaij_C",MatProductSetFromOptions_MPIDense_MPIAIJ);CHKERRQ(ierr); 19276718818eSStefano Zampini #if defined(PETSC_HAVE_CUDA) 19286718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaijcusparse_mpidense_C",MatProductSetFromOptions_MPIAIJ_MPIDense);CHKERRQ(ierr); 19296718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaijcusparse_C",MatProductSetFromOptions_MPIDense_MPIAIJ);CHKERRQ(ierr); 19306718818eSStefano Zampini #endif 19318949adfdSHong Zhang 1932af53bab2SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",MatDenseGetColumn_MPIDense);CHKERRQ(ierr); 1933af53bab2SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",MatDenseRestoreColumn_MPIDense);CHKERRQ(ierr); 193438aed534SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)mat,MATMPIDENSE);CHKERRQ(ierr); 1935273d9f13SBarry Smith PetscFunctionReturn(0); 1936273d9f13SBarry Smith } 1937273d9f13SBarry Smith 1938209238afSKris Buschelman /*MC 1939637a0070SStefano Zampini MATMPIDENSECUDA - MATMPIDENSECUDA = "mpidensecuda" - A matrix type to be used for distributed dense matrices on GPUs. 1940637a0070SStefano Zampini 1941637a0070SStefano Zampini Options Database Keys: 1942637a0070SStefano Zampini . -mat_type mpidensecuda - sets the matrix type to "mpidensecuda" during a call to MatSetFromOptions() 1943637a0070SStefano Zampini 1944637a0070SStefano Zampini Level: beginner 1945637a0070SStefano Zampini 1946637a0070SStefano Zampini .seealso: 1947637a0070SStefano Zampini 1948637a0070SStefano Zampini M*/ 1949637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1950637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreate_MPIDenseCUDA(Mat B) 1951637a0070SStefano Zampini { 1952637a0070SStefano Zampini PetscErrorCode ierr; 1953637a0070SStefano Zampini 1954637a0070SStefano Zampini PetscFunctionBegin; 195505035670SJunchao Zhang ierr = PetscCUDAInitializeCheck();CHKERRQ(ierr); 1956637a0070SStefano Zampini ierr = MatCreate_MPIDense(B);CHKERRQ(ierr); 1957637a0070SStefano Zampini ierr = MatConvert_MPIDense_MPIDenseCUDA(B,MATMPIDENSECUDA,MAT_INPLACE_MATRIX,&B);CHKERRQ(ierr); 1958637a0070SStefano Zampini PetscFunctionReturn(0); 1959637a0070SStefano Zampini } 1960637a0070SStefano Zampini #endif 1961637a0070SStefano Zampini 1962637a0070SStefano Zampini /*MC 1963002d173eSKris Buschelman MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices. 1964209238afSKris Buschelman 1965209238afSKris Buschelman This matrix type is identical to MATSEQDENSE when constructed with a single process communicator, 1966209238afSKris Buschelman and MATMPIDENSE otherwise. 1967209238afSKris Buschelman 1968209238afSKris Buschelman Options Database Keys: 1969209238afSKris Buschelman . -mat_type dense - sets the matrix type to "dense" during a call to MatSetFromOptions() 1970209238afSKris Buschelman 1971209238afSKris Buschelman Level: beginner 1972209238afSKris Buschelman 197301b82886SBarry Smith 19746947451fSStefano Zampini .seealso: MATSEQDENSE,MATMPIDENSE,MATDENSECUDA 19756947451fSStefano Zampini M*/ 19766947451fSStefano Zampini 19776947451fSStefano Zampini /*MC 19786947451fSStefano Zampini MATDENSECUDA - MATDENSECUDA = "densecuda" - A matrix type to be used for dense matrices on GPUs. 19796947451fSStefano Zampini 19806947451fSStefano Zampini This matrix type is identical to MATSEQDENSECUDA when constructed with a single process communicator, 19816947451fSStefano Zampini and MATMPIDENSECUDA otherwise. 19826947451fSStefano Zampini 19836947451fSStefano Zampini Options Database Keys: 19846947451fSStefano Zampini . -mat_type densecuda - sets the matrix type to "densecuda" during a call to MatSetFromOptions() 19856947451fSStefano Zampini 19866947451fSStefano Zampini Level: beginner 19876947451fSStefano Zampini 19886947451fSStefano Zampini .seealso: MATSEQDENSECUDA,MATMPIDENSECUDA,MATDENSE 1989209238afSKris Buschelman M*/ 1990209238afSKris Buschelman 1991273d9f13SBarry Smith /*@C 1992273d9f13SBarry Smith MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries 1993273d9f13SBarry Smith 19948f490ea3SStefano Zampini Collective 1995273d9f13SBarry Smith 1996273d9f13SBarry Smith Input Parameters: 19971c4f3114SJed Brown . B - the matrix 19980298fd71SBarry Smith - data - optional location of matrix data. Set data=NULL for PETSc 1999273d9f13SBarry Smith to control all matrix memory allocation. 2000273d9f13SBarry Smith 2001273d9f13SBarry Smith Notes: 2002273d9f13SBarry Smith The dense format is fully compatible with standard Fortran 77 2003273d9f13SBarry Smith storage by columns. 2004273d9f13SBarry Smith 2005273d9f13SBarry Smith The data input variable is intended primarily for Fortran programmers 2006273d9f13SBarry Smith who wish to allocate their own matrix memory space. Most users should 20070298fd71SBarry Smith set data=NULL. 2008273d9f13SBarry Smith 2009273d9f13SBarry Smith Level: intermediate 2010273d9f13SBarry Smith 2011273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 2012273d9f13SBarry Smith @*/ 20131c4f3114SJed Brown PetscErrorCode MatMPIDenseSetPreallocation(Mat B,PetscScalar *data) 2014273d9f13SBarry Smith { 20154ac538c5SBarry Smith PetscErrorCode ierr; 2016273d9f13SBarry Smith 2017273d9f13SBarry Smith PetscFunctionBegin; 2018d5ea218eSStefano Zampini PetscValidHeaderSpecific(B,MAT_CLASSID,1); 20191c4f3114SJed Brown ierr = PetscTryMethod(B,"MatMPIDenseSetPreallocation_C",(Mat,PetscScalar*),(B,data));CHKERRQ(ierr); 2020273d9f13SBarry Smith PetscFunctionReturn(0); 2021273d9f13SBarry Smith } 2022273d9f13SBarry Smith 2023d3042a70SBarry Smith /*@ 2024637a0070SStefano Zampini MatDensePlaceArray - Allows one to replace the array in a dense matrix with an 2025d3042a70SBarry Smith array provided by the user. This is useful to avoid copying an array 2026d3042a70SBarry Smith into a matrix 2027d3042a70SBarry Smith 2028d3042a70SBarry Smith Not Collective 2029d3042a70SBarry Smith 2030d3042a70SBarry Smith Input Parameters: 2031d3042a70SBarry Smith + mat - the matrix 2032d3042a70SBarry Smith - array - the array in column major order 2033d3042a70SBarry Smith 2034d3042a70SBarry Smith Notes: 2035d3042a70SBarry Smith You can return to the original array with a call to MatDenseResetArray(). The user is responsible for freeing this array; it will not be 2036d3042a70SBarry Smith freed when the matrix is destroyed. 2037d3042a70SBarry Smith 2038d3042a70SBarry Smith Level: developer 2039d3042a70SBarry Smith 2040d3042a70SBarry Smith .seealso: MatDenseGetArray(), MatDenseResetArray(), VecPlaceArray(), VecGetArray(), VecRestoreArray(), VecReplaceArray(), VecResetArray() 2041d3042a70SBarry Smith 2042d3042a70SBarry Smith @*/ 2043637a0070SStefano Zampini PetscErrorCode MatDensePlaceArray(Mat mat,const PetscScalar *array) 2044d3042a70SBarry Smith { 2045d3042a70SBarry Smith PetscErrorCode ierr; 2046637a0070SStefano Zampini 2047d3042a70SBarry Smith PetscFunctionBegin; 2048d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2049d3042a70SBarry Smith ierr = PetscUseMethod(mat,"MatDensePlaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr); 2050d3042a70SBarry Smith ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 2051637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 2052637a0070SStefano Zampini mat->offloadmask = PETSC_OFFLOAD_CPU; 2053637a0070SStefano Zampini #endif 2054d3042a70SBarry Smith PetscFunctionReturn(0); 2055d3042a70SBarry Smith } 2056d3042a70SBarry Smith 2057d3042a70SBarry Smith /*@ 2058d3042a70SBarry Smith MatDenseResetArray - Resets the matrix array to that it previously had before the call to MatDensePlaceArray() 2059d3042a70SBarry Smith 2060d3042a70SBarry Smith Not Collective 2061d3042a70SBarry Smith 2062d3042a70SBarry Smith Input Parameters: 2063d3042a70SBarry Smith . mat - the matrix 2064d3042a70SBarry Smith 2065d3042a70SBarry Smith Notes: 2066d3042a70SBarry Smith You can only call this after a call to MatDensePlaceArray() 2067d3042a70SBarry Smith 2068d3042a70SBarry Smith Level: developer 2069d3042a70SBarry Smith 2070d3042a70SBarry Smith .seealso: MatDenseGetArray(), MatDensePlaceArray(), VecPlaceArray(), VecGetArray(), VecRestoreArray(), VecReplaceArray(), VecResetArray() 2071d3042a70SBarry Smith 2072d3042a70SBarry Smith @*/ 2073d3042a70SBarry Smith PetscErrorCode MatDenseResetArray(Mat mat) 2074d3042a70SBarry Smith { 2075d3042a70SBarry Smith PetscErrorCode ierr; 2076637a0070SStefano Zampini 2077d3042a70SBarry Smith PetscFunctionBegin; 2078d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2079d3042a70SBarry Smith ierr = PetscUseMethod(mat,"MatDenseResetArray_C",(Mat),(mat));CHKERRQ(ierr); 2080d3042a70SBarry Smith ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 2081d3042a70SBarry Smith PetscFunctionReturn(0); 2082d3042a70SBarry Smith } 2083d3042a70SBarry Smith 2084d5ea218eSStefano Zampini /*@ 2085d5ea218eSStefano Zampini MatDenseReplaceArray - Allows one to replace the array in a dense matrix with an 2086d5ea218eSStefano Zampini array provided by the user. This is useful to avoid copying an array 2087d5ea218eSStefano Zampini into a matrix 2088d5ea218eSStefano Zampini 2089d5ea218eSStefano Zampini Not Collective 2090d5ea218eSStefano Zampini 2091d5ea218eSStefano Zampini Input Parameters: 2092d5ea218eSStefano Zampini + mat - the matrix 2093d5ea218eSStefano Zampini - array - the array in column major order 2094d5ea218eSStefano Zampini 2095d5ea218eSStefano Zampini Notes: 2096d5ea218eSStefano Zampini The memory passed in MUST be obtained with PetscMalloc() and CANNOT be 2097d5ea218eSStefano Zampini freed by the user. It will be freed when the matrix is destroyed. 2098d5ea218eSStefano Zampini 2099d5ea218eSStefano Zampini Level: developer 2100d5ea218eSStefano Zampini 2101d5ea218eSStefano Zampini .seealso: MatDenseGetArray(), VecReplaceArray() 2102d5ea218eSStefano Zampini @*/ 2103d5ea218eSStefano Zampini PetscErrorCode MatDenseReplaceArray(Mat mat,const PetscScalar *array) 2104d5ea218eSStefano Zampini { 2105d5ea218eSStefano Zampini PetscErrorCode ierr; 2106d5ea218eSStefano Zampini 2107d5ea218eSStefano Zampini PetscFunctionBegin; 2108d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2109d5ea218eSStefano Zampini ierr = PetscUseMethod(mat,"MatDenseReplaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr); 2110d5ea218eSStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 2111d5ea218eSStefano Zampini #if defined(PETSC_HAVE_CUDA) 2112d5ea218eSStefano Zampini mat->offloadmask = PETSC_OFFLOAD_CPU; 2113d5ea218eSStefano Zampini #endif 2114d5ea218eSStefano Zampini PetscFunctionReturn(0); 2115d5ea218eSStefano Zampini } 2116d5ea218eSStefano Zampini 2117637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 21188965ea79SLois Curfman McInnes /*@C 2119637a0070SStefano Zampini MatDenseCUDAPlaceArray - Allows one to replace the GPU array in a dense matrix with an 2120637a0070SStefano Zampini array provided by the user. This is useful to avoid copying an array 2121637a0070SStefano Zampini into a matrix 2122637a0070SStefano Zampini 2123637a0070SStefano Zampini Not Collective 2124637a0070SStefano Zampini 2125637a0070SStefano Zampini Input Parameters: 2126637a0070SStefano Zampini + mat - the matrix 2127637a0070SStefano Zampini - array - the array in column major order 2128637a0070SStefano Zampini 2129637a0070SStefano Zampini Notes: 2130637a0070SStefano Zampini You can return to the original array with a call to MatDenseCUDAResetArray(). The user is responsible for freeing this array; it will not be 2131637a0070SStefano Zampini freed when the matrix is destroyed. The array must have been allocated with cudaMalloc(). 2132637a0070SStefano Zampini 2133637a0070SStefano Zampini Level: developer 2134637a0070SStefano Zampini 2135637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDAResetArray() 2136637a0070SStefano Zampini @*/ 2137637a0070SStefano Zampini PetscErrorCode MatDenseCUDAPlaceArray(Mat mat,const PetscScalar *array) 2138637a0070SStefano Zampini { 2139637a0070SStefano Zampini PetscErrorCode ierr; 2140637a0070SStefano Zampini 2141637a0070SStefano Zampini PetscFunctionBegin; 2142d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2143637a0070SStefano Zampini ierr = PetscUseMethod(mat,"MatDenseCUDAPlaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr); 2144637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 2145637a0070SStefano Zampini mat->offloadmask = PETSC_OFFLOAD_GPU; 2146637a0070SStefano Zampini PetscFunctionReturn(0); 2147637a0070SStefano Zampini } 2148637a0070SStefano Zampini 2149637a0070SStefano Zampini /*@C 2150637a0070SStefano Zampini MatDenseCUDAResetArray - Resets the matrix array to that it previously had before the call to MatDenseCUDAPlaceArray() 2151637a0070SStefano Zampini 2152637a0070SStefano Zampini Not Collective 2153637a0070SStefano Zampini 2154637a0070SStefano Zampini Input Parameters: 2155637a0070SStefano Zampini . mat - the matrix 2156637a0070SStefano Zampini 2157637a0070SStefano Zampini Notes: 2158637a0070SStefano Zampini You can only call this after a call to MatDenseCUDAPlaceArray() 2159637a0070SStefano Zampini 2160637a0070SStefano Zampini Level: developer 2161637a0070SStefano Zampini 2162637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDAPlaceArray() 2163637a0070SStefano Zampini 2164637a0070SStefano Zampini @*/ 2165637a0070SStefano Zampini PetscErrorCode MatDenseCUDAResetArray(Mat mat) 2166637a0070SStefano Zampini { 2167637a0070SStefano Zampini PetscErrorCode ierr; 2168637a0070SStefano Zampini 2169637a0070SStefano Zampini PetscFunctionBegin; 2170d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2171637a0070SStefano Zampini ierr = PetscUseMethod(mat,"MatDenseCUDAResetArray_C",(Mat),(mat));CHKERRQ(ierr); 2172637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 2173637a0070SStefano Zampini PetscFunctionReturn(0); 2174637a0070SStefano Zampini } 2175637a0070SStefano Zampini 2176637a0070SStefano Zampini /*@C 2177d5ea218eSStefano Zampini MatDenseCUDAReplaceArray - Allows one to replace the GPU array in a dense matrix with an 2178d5ea218eSStefano Zampini array provided by the user. This is useful to avoid copying an array 2179d5ea218eSStefano Zampini into a matrix 2180d5ea218eSStefano Zampini 2181d5ea218eSStefano Zampini Not Collective 2182d5ea218eSStefano Zampini 2183d5ea218eSStefano Zampini Input Parameters: 2184d5ea218eSStefano Zampini + mat - the matrix 2185d5ea218eSStefano Zampini - array - the array in column major order 2186d5ea218eSStefano Zampini 2187d5ea218eSStefano Zampini Notes: 2188d5ea218eSStefano Zampini This permanently replaces the GPU array and frees the memory associated with the old GPU array. 2189d5ea218eSStefano Zampini The memory passed in CANNOT be freed by the user. It will be freed 2190d5ea218eSStefano Zampini when the matrix is destroyed. The array should respect the matrix leading dimension. 2191d5ea218eSStefano Zampini 2192d5ea218eSStefano Zampini Level: developer 2193d5ea218eSStefano Zampini 2194d5ea218eSStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDAPlaceArray(), MatDenseCUDAResetArray() 2195d5ea218eSStefano Zampini @*/ 2196d5ea218eSStefano Zampini PetscErrorCode MatDenseCUDAReplaceArray(Mat mat,const PetscScalar *array) 2197d5ea218eSStefano Zampini { 2198d5ea218eSStefano Zampini PetscErrorCode ierr; 2199d5ea218eSStefano Zampini 2200d5ea218eSStefano Zampini PetscFunctionBegin; 2201d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2202d5ea218eSStefano Zampini ierr = PetscUseMethod(mat,"MatDenseCUDAReplaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr); 2203d5ea218eSStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 2204d5ea218eSStefano Zampini mat->offloadmask = PETSC_OFFLOAD_GPU; 2205d5ea218eSStefano Zampini PetscFunctionReturn(0); 2206d5ea218eSStefano Zampini } 2207d5ea218eSStefano Zampini 2208d5ea218eSStefano Zampini /*@C 2209637a0070SStefano Zampini MatDenseCUDAGetArrayWrite - Provides write access to the CUDA buffer inside a dense matrix. 2210637a0070SStefano Zampini 2211637a0070SStefano Zampini Not Collective 2212637a0070SStefano Zampini 2213637a0070SStefano Zampini Input Parameters: 2214637a0070SStefano Zampini . A - the matrix 2215637a0070SStefano Zampini 2216637a0070SStefano Zampini Output Parameters 2217637a0070SStefano Zampini . array - the GPU array in column major order 2218637a0070SStefano Zampini 2219637a0070SStefano Zampini Notes: 2220637a0070SStefano Zampini The data on the GPU may not be updated due to operations done on the CPU. If you need updated data, use MatDenseCUDAGetArray(). The array must be restored with MatDenseCUDARestoreArrayWrite() when no longer needed. 2221637a0070SStefano Zampini 2222637a0070SStefano Zampini Level: developer 2223637a0070SStefano Zampini 2224637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayRead(), MatDenseCUDARestoreArrayRead() 2225637a0070SStefano Zampini @*/ 2226637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArrayWrite(Mat A, PetscScalar **a) 2227637a0070SStefano Zampini { 2228637a0070SStefano Zampini PetscErrorCode ierr; 2229637a0070SStefano Zampini 2230637a0070SStefano Zampini PetscFunctionBegin; 2231d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2232637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDAGetArrayWrite_C",(Mat,PetscScalar**),(A,a));CHKERRQ(ierr); 2233637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr); 2234637a0070SStefano Zampini PetscFunctionReturn(0); 2235637a0070SStefano Zampini } 2236637a0070SStefano Zampini 2237637a0070SStefano Zampini /*@C 2238637a0070SStefano Zampini MatDenseCUDARestoreArrayWrite - Restore write access to the CUDA buffer inside a dense matrix previously obtained with MatDenseCUDAGetArrayWrite(). 2239637a0070SStefano Zampini 2240637a0070SStefano Zampini Not Collective 2241637a0070SStefano Zampini 2242637a0070SStefano Zampini Input Parameters: 2243637a0070SStefano Zampini + A - the matrix 2244637a0070SStefano Zampini - array - the GPU array in column major order 2245637a0070SStefano Zampini 2246637a0070SStefano Zampini Notes: 2247637a0070SStefano Zampini 2248637a0070SStefano Zampini Level: developer 2249637a0070SStefano Zampini 2250637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead(), MatDenseCUDAGetArrayRead() 2251637a0070SStefano Zampini @*/ 2252637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArrayWrite(Mat A, PetscScalar **a) 2253637a0070SStefano Zampini { 2254637a0070SStefano Zampini PetscErrorCode ierr; 2255637a0070SStefano Zampini 2256637a0070SStefano Zampini PetscFunctionBegin; 2257d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2258637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDARestoreArrayWrite_C",(Mat,PetscScalar**),(A,a));CHKERRQ(ierr); 2259637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr); 2260637a0070SStefano Zampini A->offloadmask = PETSC_OFFLOAD_GPU; 2261637a0070SStefano Zampini PetscFunctionReturn(0); 2262637a0070SStefano Zampini } 2263637a0070SStefano Zampini 2264637a0070SStefano Zampini /*@C 2265637a0070SStefano Zampini MatDenseCUDAGetArrayRead - Provides read-only access to the CUDA buffer inside a dense matrix. The array must be restored with MatDenseCUDARestoreArrayRead() when no longer needed. 2266637a0070SStefano Zampini 2267637a0070SStefano Zampini Not Collective 2268637a0070SStefano Zampini 2269637a0070SStefano Zampini Input Parameters: 2270637a0070SStefano Zampini . A - the matrix 2271637a0070SStefano Zampini 2272637a0070SStefano Zampini Output Parameters 2273637a0070SStefano Zampini . array - the GPU array in column major order 2274637a0070SStefano Zampini 2275637a0070SStefano Zampini Notes: 2276637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). 2277637a0070SStefano Zampini 2278637a0070SStefano Zampini Level: developer 2279637a0070SStefano Zampini 2280637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead() 2281637a0070SStefano Zampini @*/ 2282637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArrayRead(Mat A, const PetscScalar **a) 2283637a0070SStefano Zampini { 2284637a0070SStefano Zampini PetscErrorCode ierr; 2285637a0070SStefano Zampini 2286637a0070SStefano Zampini PetscFunctionBegin; 2287d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2288637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDAGetArrayRead_C",(Mat,const PetscScalar**),(A,a));CHKERRQ(ierr); 2289637a0070SStefano Zampini PetscFunctionReturn(0); 2290637a0070SStefano Zampini } 2291637a0070SStefano Zampini 2292637a0070SStefano Zampini /*@C 2293637a0070SStefano Zampini MatDenseCUDARestoreArrayRead - Restore read-only access to the CUDA buffer inside a dense matrix previously obtained with a call to MatDenseCUDAGetArrayRead(). 2294637a0070SStefano Zampini 2295637a0070SStefano Zampini Not Collective 2296637a0070SStefano Zampini 2297637a0070SStefano Zampini Input Parameters: 2298637a0070SStefano Zampini + A - the matrix 2299637a0070SStefano Zampini - array - the GPU array in column major order 2300637a0070SStefano Zampini 2301637a0070SStefano Zampini Notes: 2302637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). 2303637a0070SStefano Zampini 2304637a0070SStefano Zampini Level: developer 2305637a0070SStefano Zampini 2306637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDAGetArrayRead() 2307637a0070SStefano Zampini @*/ 2308637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArrayRead(Mat A, const PetscScalar **a) 2309637a0070SStefano Zampini { 2310637a0070SStefano Zampini PetscErrorCode ierr; 2311637a0070SStefano Zampini 2312637a0070SStefano Zampini PetscFunctionBegin; 2313637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDARestoreArrayRead_C",(Mat,const PetscScalar**),(A,a));CHKERRQ(ierr); 2314637a0070SStefano Zampini PetscFunctionReturn(0); 2315637a0070SStefano Zampini } 2316637a0070SStefano Zampini 2317637a0070SStefano Zampini /*@C 2318637a0070SStefano Zampini MatDenseCUDAGetArray - Provides access to the CUDA buffer inside a dense matrix. The array must be restored with MatDenseCUDARestoreArray() when no longer needed. 2319637a0070SStefano Zampini 2320637a0070SStefano Zampini Not Collective 2321637a0070SStefano Zampini 2322637a0070SStefano Zampini Input Parameters: 2323637a0070SStefano Zampini . A - the matrix 2324637a0070SStefano Zampini 2325637a0070SStefano Zampini Output Parameters 2326637a0070SStefano Zampini . array - the GPU array in column major order 2327637a0070SStefano Zampini 2328637a0070SStefano Zampini Notes: 2329637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). For read-only access, use MatDenseCUDAGetArrayRead(). 2330637a0070SStefano Zampini 2331637a0070SStefano Zampini Level: developer 2332637a0070SStefano Zampini 2333637a0070SStefano Zampini .seealso: MatDenseCUDAGetArrayRead(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead() 2334637a0070SStefano Zampini @*/ 2335637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArray(Mat A, PetscScalar **a) 2336637a0070SStefano Zampini { 2337637a0070SStefano Zampini PetscErrorCode ierr; 2338637a0070SStefano Zampini 2339637a0070SStefano Zampini PetscFunctionBegin; 2340d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2341637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDAGetArray_C",(Mat,PetscScalar**),(A,a));CHKERRQ(ierr); 2342637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr); 2343637a0070SStefano Zampini PetscFunctionReturn(0); 2344637a0070SStefano Zampini } 2345637a0070SStefano Zampini 2346637a0070SStefano Zampini /*@C 2347637a0070SStefano Zampini MatDenseCUDARestoreArray - Restore access to the CUDA buffer inside a dense matrix previously obtained with MatDenseCUDAGetArray(). 2348637a0070SStefano Zampini 2349637a0070SStefano Zampini Not Collective 2350637a0070SStefano Zampini 2351637a0070SStefano Zampini Input Parameters: 2352637a0070SStefano Zampini + A - the matrix 2353637a0070SStefano Zampini - array - the GPU array in column major order 2354637a0070SStefano Zampini 2355637a0070SStefano Zampini Notes: 2356637a0070SStefano Zampini 2357637a0070SStefano Zampini Level: developer 2358637a0070SStefano Zampini 2359637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead(), MatDenseCUDAGetArrayRead() 2360637a0070SStefano Zampini @*/ 2361637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArray(Mat A, PetscScalar **a) 2362637a0070SStefano Zampini { 2363637a0070SStefano Zampini PetscErrorCode ierr; 2364637a0070SStefano Zampini 2365637a0070SStefano Zampini PetscFunctionBegin; 2366d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2367637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDARestoreArray_C",(Mat,PetscScalar**),(A,a));CHKERRQ(ierr); 2368637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr); 2369637a0070SStefano Zampini A->offloadmask = PETSC_OFFLOAD_GPU; 2370637a0070SStefano Zampini PetscFunctionReturn(0); 2371637a0070SStefano Zampini } 2372637a0070SStefano Zampini #endif 2373637a0070SStefano Zampini 2374637a0070SStefano Zampini /*@C 2375637a0070SStefano Zampini MatCreateDense - Creates a matrix in dense format. 23768965ea79SLois Curfman McInnes 2377d083f849SBarry Smith Collective 2378db81eaa0SLois Curfman McInnes 23798965ea79SLois Curfman McInnes Input Parameters: 2380db81eaa0SLois Curfman McInnes + comm - MPI communicator 23818965ea79SLois Curfman McInnes . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2382db81eaa0SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 23838965ea79SLois Curfman McInnes . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 2384db81eaa0SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 23856cfe35ddSJose E. Roman - data - optional location of matrix data. Set data=NULL (PETSC_NULL_SCALAR for Fortran users) for PETSc 2386dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 23878965ea79SLois Curfman McInnes 23888965ea79SLois Curfman McInnes Output Parameter: 2389477f1c0bSLois Curfman McInnes . A - the matrix 23908965ea79SLois Curfman McInnes 2391b259b22eSLois Curfman McInnes Notes: 239239ddd567SLois Curfman McInnes The dense format is fully compatible with standard Fortran 77 239339ddd567SLois Curfman McInnes storage by columns. 2394*002bc6daSRichard Tran Mills Note that, although local portions of the matrix are stored in column-major 2395*002bc6daSRichard Tran Mills order, the matrix is partitioned across MPI ranks by row. 23968965ea79SLois Curfman McInnes 239718f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 239818f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 23996cfe35ddSJose E. Roman set data=NULL (PETSC_NULL_SCALAR for Fortran users). 240018f449edSLois Curfman McInnes 24018965ea79SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 24028965ea79SLois Curfman McInnes (possibly both). 24038965ea79SLois Curfman McInnes 2404027ccd11SLois Curfman McInnes Level: intermediate 2405027ccd11SLois Curfman McInnes 240639ddd567SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 24078965ea79SLois Curfman McInnes @*/ 240869b1f4b7SBarry Smith PetscErrorCode MatCreateDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 24098965ea79SLois Curfman McInnes { 24106849ba73SBarry Smith PetscErrorCode ierr; 241113f74950SBarry Smith PetscMPIInt size; 24128965ea79SLois Curfman McInnes 24133a40ed3dSBarry Smith PetscFunctionBegin; 2414f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2415f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2416273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2417273d9f13SBarry Smith if (size > 1) { 24188f490ea3SStefano Zampini PetscBool havedata = (PetscBool)!!data; 24198f490ea3SStefano Zampini 2420273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIDENSE);CHKERRQ(ierr); 2421273d9f13SBarry Smith ierr = MatMPIDenseSetPreallocation(*A,data);CHKERRQ(ierr); 24228f490ea3SStefano Zampini ierr = MPIU_Allreduce(MPI_IN_PLACE,&havedata,1,MPIU_BOOL,MPI_LOR,comm);CHKERRQ(ierr); 24238f490ea3SStefano Zampini if (havedata) { /* user provided data array, so no need to assemble */ 24246cfe35ddSJose E. Roman ierr = MatSetUpMultiply_MPIDense(*A);CHKERRQ(ierr); 24256cfe35ddSJose E. Roman (*A)->assembled = PETSC_TRUE; 24266cfe35ddSJose E. Roman } 2427273d9f13SBarry Smith } else { 2428273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr); 2429273d9f13SBarry Smith ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr); 24308c469469SLois Curfman McInnes } 24313a40ed3dSBarry Smith PetscFunctionReturn(0); 24328965ea79SLois Curfman McInnes } 24338965ea79SLois Curfman McInnes 2434637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 2435637a0070SStefano Zampini /*@C 2436637a0070SStefano Zampini MatCreateDenseCUDA - Creates a matrix in dense format using CUDA. 2437637a0070SStefano Zampini 2438637a0070SStefano Zampini Collective 2439637a0070SStefano Zampini 2440637a0070SStefano Zampini Input Parameters: 2441637a0070SStefano Zampini + comm - MPI communicator 2442637a0070SStefano Zampini . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2443637a0070SStefano Zampini . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 2444637a0070SStefano Zampini . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 2445637a0070SStefano Zampini . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 2446637a0070SStefano Zampini - data - optional location of GPU matrix data. Set data=NULL for PETSc 2447637a0070SStefano Zampini to control matrix memory allocation. 2448637a0070SStefano Zampini 2449637a0070SStefano Zampini Output Parameter: 2450637a0070SStefano Zampini . A - the matrix 2451637a0070SStefano Zampini 2452637a0070SStefano Zampini Notes: 2453637a0070SStefano Zampini 2454637a0070SStefano Zampini Level: intermediate 2455637a0070SStefano Zampini 2456637a0070SStefano Zampini .seealso: MatCreate(), MatCreateDense() 2457637a0070SStefano Zampini @*/ 2458637a0070SStefano Zampini PetscErrorCode MatCreateDenseCUDA(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 2459637a0070SStefano Zampini { 2460637a0070SStefano Zampini PetscErrorCode ierr; 2461637a0070SStefano Zampini PetscMPIInt size; 2462637a0070SStefano Zampini 2463637a0070SStefano Zampini PetscFunctionBegin; 2464637a0070SStefano Zampini ierr = MatCreate(comm,A);CHKERRQ(ierr); 2465637a0070SStefano Zampini PetscValidLogicalCollectiveBool(*A,!!data,6); 2466637a0070SStefano Zampini ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2467637a0070SStefano Zampini ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2468637a0070SStefano Zampini if (size > 1) { 2469637a0070SStefano Zampini ierr = MatSetType(*A,MATMPIDENSECUDA);CHKERRQ(ierr); 2470637a0070SStefano Zampini ierr = MatMPIDenseCUDASetPreallocation(*A,data);CHKERRQ(ierr); 2471637a0070SStefano Zampini if (data) { /* user provided data array, so no need to assemble */ 2472637a0070SStefano Zampini ierr = MatSetUpMultiply_MPIDense(*A);CHKERRQ(ierr); 2473637a0070SStefano Zampini (*A)->assembled = PETSC_TRUE; 2474637a0070SStefano Zampini } 2475637a0070SStefano Zampini } else { 2476637a0070SStefano Zampini ierr = MatSetType(*A,MATSEQDENSECUDA);CHKERRQ(ierr); 2477637a0070SStefano Zampini ierr = MatSeqDenseCUDASetPreallocation(*A,data);CHKERRQ(ierr); 2478637a0070SStefano Zampini } 2479637a0070SStefano Zampini PetscFunctionReturn(0); 2480637a0070SStefano Zampini } 2481637a0070SStefano Zampini #endif 2482637a0070SStefano Zampini 24836849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat) 24848965ea79SLois Curfman McInnes { 24858965ea79SLois Curfman McInnes Mat mat; 24863501a2bdSLois Curfman McInnes Mat_MPIDense *a,*oldmat = (Mat_MPIDense*)A->data; 2487dfbe8321SBarry Smith PetscErrorCode ierr; 24888965ea79SLois Curfman McInnes 24893a40ed3dSBarry Smith PetscFunctionBegin; 2490f4259b30SLisandro Dalcin *newmat = NULL; 2491ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&mat);CHKERRQ(ierr); 2492d0f46423SBarry Smith ierr = MatSetSizes(mat,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 24937adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)A)->type_name);CHKERRQ(ierr); 2494834f8fabSBarry Smith a = (Mat_MPIDense*)mat->data; 24955aa7edbeSHong Zhang 2496d5f3da31SBarry Smith mat->factortype = A->factortype; 2497c456f294SBarry Smith mat->assembled = PETSC_TRUE; 2498273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 24998965ea79SLois Curfman McInnes 2500e0fa3b82SLois Curfman McInnes mat->insertmode = NOT_SET_VALUES; 25013782ba37SSatish Balay a->donotstash = oldmat->donotstash; 2502e04c1aa4SHong Zhang 25031e1e43feSBarry Smith ierr = PetscLayoutReference(A->rmap,&mat->rmap);CHKERRQ(ierr); 25041e1e43feSBarry Smith ierr = PetscLayoutReference(A->cmap,&mat->cmap);CHKERRQ(ierr); 25058965ea79SLois Curfman McInnes 25065609ef8eSBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 25073bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 2508637a0070SStefano Zampini ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 250901b82886SBarry Smith 25108965ea79SLois Curfman McInnes *newmat = mat; 25113a40ed3dSBarry Smith PetscFunctionReturn(0); 25128965ea79SLois Curfman McInnes } 25138965ea79SLois Curfman McInnes 2514eb91f321SVaclav Hapla PetscErrorCode MatLoad_MPIDense(Mat newMat, PetscViewer viewer) 2515eb91f321SVaclav Hapla { 2516eb91f321SVaclav Hapla PetscErrorCode ierr; 251787d5ce66SSatish Balay PetscBool isbinary; 251887d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 251987d5ce66SSatish Balay PetscBool ishdf5; 252087d5ce66SSatish Balay #endif 2521eb91f321SVaclav Hapla 2522eb91f321SVaclav Hapla PetscFunctionBegin; 2523eb91f321SVaclav Hapla PetscValidHeaderSpecific(newMat,MAT_CLASSID,1); 2524eb91f321SVaclav Hapla PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2); 2525eb91f321SVaclav Hapla /* force binary viewer to load .info file if it has not yet done so */ 2526eb91f321SVaclav Hapla ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr); 2527eb91f321SVaclav Hapla ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 252887d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 2529eb91f321SVaclav Hapla ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERHDF5, &ishdf5);CHKERRQ(ierr); 253087d5ce66SSatish Balay #endif 2531eb91f321SVaclav Hapla if (isbinary) { 25328491ab44SLisandro Dalcin ierr = MatLoad_Dense_Binary(newMat,viewer);CHKERRQ(ierr); 2533eb91f321SVaclav Hapla #if defined(PETSC_HAVE_HDF5) 253487d5ce66SSatish Balay } else if (ishdf5) { 2535eb91f321SVaclav Hapla ierr = MatLoad_Dense_HDF5(newMat,viewer);CHKERRQ(ierr); 2536eb91f321SVaclav Hapla #endif 253787d5ce66SSatish Balay } else SETERRQ2(PetscObjectComm((PetscObject)newMat),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)newMat)->type_name); 2538eb91f321SVaclav Hapla PetscFunctionReturn(0); 2539eb91f321SVaclav Hapla } 2540eb91f321SVaclav Hapla 25416718818eSStefano Zampini static PetscErrorCode MatEqual_MPIDense(Mat A,Mat B,PetscBool *flag) 25426e4ee0c6SHong Zhang { 25436e4ee0c6SHong Zhang Mat_MPIDense *matB = (Mat_MPIDense*)B->data,*matA = (Mat_MPIDense*)A->data; 25446e4ee0c6SHong Zhang Mat a,b; 2545ace3abfcSBarry Smith PetscBool flg; 25466e4ee0c6SHong Zhang PetscErrorCode ierr; 254790ace30eSBarry Smith 25486e4ee0c6SHong Zhang PetscFunctionBegin; 25496e4ee0c6SHong Zhang a = matA->A; 25506e4ee0c6SHong Zhang b = matB->A; 25516e4ee0c6SHong Zhang ierr = MatEqual(a,b,&flg);CHKERRQ(ierr); 2552b2566f29SBarry Smith ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 25536e4ee0c6SHong Zhang PetscFunctionReturn(0); 25546e4ee0c6SHong Zhang } 255590ace30eSBarry Smith 25566718818eSStefano Zampini PetscErrorCode MatDestroy_MatTransMatMult_MPIDense_MPIDense(void *data) 2557baa3c1c6SHong Zhang { 2558baa3c1c6SHong Zhang PetscErrorCode ierr; 25596718818eSStefano Zampini Mat_TransMatMultDense *atb = (Mat_TransMatMultDense *)data; 2560baa3c1c6SHong Zhang 2561baa3c1c6SHong Zhang PetscFunctionBegin; 2562637a0070SStefano Zampini ierr = PetscFree2(atb->sendbuf,atb->recvcounts);CHKERRQ(ierr); 2563637a0070SStefano Zampini ierr = MatDestroy(&atb->atb);CHKERRQ(ierr); 2564baa3c1c6SHong Zhang ierr = PetscFree(atb);CHKERRQ(ierr); 2565baa3c1c6SHong Zhang PetscFunctionReturn(0); 2566baa3c1c6SHong Zhang } 2567baa3c1c6SHong Zhang 25686718818eSStefano Zampini PetscErrorCode MatDestroy_MatMatTransMult_MPIDense_MPIDense(void *data) 2569cc48ffa7SToby Isaac { 2570cc48ffa7SToby Isaac PetscErrorCode ierr; 25716718818eSStefano Zampini Mat_MatTransMultDense *abt = (Mat_MatTransMultDense *)data; 2572cc48ffa7SToby Isaac 2573cc48ffa7SToby Isaac PetscFunctionBegin; 2574cc48ffa7SToby Isaac ierr = PetscFree2(abt->buf[0],abt->buf[1]);CHKERRQ(ierr); 2575faa55883SToby Isaac ierr = PetscFree2(abt->recvcounts,abt->recvdispls);CHKERRQ(ierr); 2576cc48ffa7SToby Isaac ierr = PetscFree(abt);CHKERRQ(ierr); 2577cc48ffa7SToby Isaac PetscFunctionReturn(0); 2578cc48ffa7SToby Isaac } 2579cc48ffa7SToby Isaac 25806718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 2581cb20be35SHong Zhang { 2582baa3c1c6SHong Zhang Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 25836718818eSStefano Zampini Mat_TransMatMultDense *atb; 2584cb20be35SHong Zhang PetscErrorCode ierr; 2585cb20be35SHong Zhang MPI_Comm comm; 25866718818eSStefano Zampini PetscMPIInt size,*recvcounts; 25876718818eSStefano Zampini PetscScalar *carray,*sendbuf; 2588637a0070SStefano Zampini const PetscScalar *atbarray; 2589d5017740SHong Zhang PetscInt i,cN=C->cmap->N,cM=C->rmap->N,proc,k,j; 2590e68c0b26SHong Zhang const PetscInt *ranges; 2591cb20be35SHong Zhang 2592cb20be35SHong Zhang PetscFunctionBegin; 25936718818eSStefano Zampini MatCheckProduct(C,3); 25946718818eSStefano Zampini if (!C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 25956718818eSStefano Zampini atb = (Mat_TransMatMultDense *)C->product->data; 25966718818eSStefano Zampini recvcounts = atb->recvcounts; 25976718818eSStefano Zampini sendbuf = atb->sendbuf; 25986718818eSStefano Zampini 2599cb20be35SHong Zhang ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 2600cb20be35SHong Zhang ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2601e68c0b26SHong Zhang 2602c5ef1628SHong Zhang /* compute atbarray = aseq^T * bseq */ 2603637a0070SStefano Zampini ierr = MatTransposeMatMult(a->A,b->A,atb->atb ? MAT_REUSE_MATRIX : MAT_INITIAL_MATRIX,PETSC_DEFAULT,&atb->atb);CHKERRQ(ierr); 2604cb20be35SHong Zhang 2605cb20be35SHong Zhang ierr = MatGetOwnershipRanges(C,&ranges);CHKERRQ(ierr); 2606cb20be35SHong Zhang 2607660d5466SHong Zhang /* arrange atbarray into sendbuf */ 2608637a0070SStefano Zampini ierr = MatDenseGetArrayRead(atb->atb,&atbarray);CHKERRQ(ierr); 2609637a0070SStefano Zampini for (proc=0, k=0; proc<size; proc++) { 2610baa3c1c6SHong Zhang for (j=0; j<cN; j++) { 2611c5ef1628SHong Zhang for (i=ranges[proc]; i<ranges[proc+1]; i++) sendbuf[k++] = atbarray[i+j*cM]; 2612cb20be35SHong Zhang } 2613cb20be35SHong Zhang } 2614637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(atb->atb,&atbarray);CHKERRQ(ierr); 2615637a0070SStefano Zampini 2616c5ef1628SHong Zhang /* sum all atbarray to local values of C */ 26170acaeb71SStefano Zampini ierr = MatDenseGetArrayWrite(c->A,&carray);CHKERRQ(ierr); 26183462b7efSHong Zhang ierr = MPI_Reduce_scatter(sendbuf,carray,recvcounts,MPIU_SCALAR,MPIU_SUM,comm);CHKERRQ(ierr); 26190acaeb71SStefano Zampini ierr = MatDenseRestoreArrayWrite(c->A,&carray);CHKERRQ(ierr); 26200acaeb71SStefano Zampini ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 26210acaeb71SStefano Zampini ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2622cb20be35SHong Zhang PetscFunctionReturn(0); 2623cb20be35SHong Zhang } 2624cb20be35SHong Zhang 26256718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat C) 2626cb20be35SHong Zhang { 2627cb20be35SHong Zhang PetscErrorCode ierr; 2628cb20be35SHong Zhang MPI_Comm comm; 2629baa3c1c6SHong Zhang PetscMPIInt size; 2630660d5466SHong Zhang PetscInt cm=A->cmap->n,cM,cN=B->cmap->N; 2631baa3c1c6SHong Zhang Mat_TransMatMultDense *atb; 26326718818eSStefano Zampini PetscBool cisdense; 26330acaeb71SStefano Zampini PetscInt i; 26340acaeb71SStefano Zampini const PetscInt *ranges; 2635cb20be35SHong Zhang 2636cb20be35SHong Zhang PetscFunctionBegin; 26376718818eSStefano Zampini MatCheckProduct(C,3); 26386718818eSStefano Zampini if (C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty"); 2639baa3c1c6SHong Zhang ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 2640cb20be35SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) { 2641cb20be35SHong Zhang SETERRQ4(comm,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != B (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 2642cb20be35SHong Zhang } 2643cb20be35SHong Zhang 26444222ddf1SHong Zhang /* create matrix product C */ 26456718818eSStefano Zampini ierr = MatSetSizes(C,cm,B->cmap->n,A->cmap->N,B->cmap->N);CHKERRQ(ierr); 26466718818eSStefano Zampini ierr = PetscObjectTypeCompareAny((PetscObject)C,&cisdense,MATMPIDENSE,MATMPIDENSECUDA,"");CHKERRQ(ierr); 26476718818eSStefano Zampini if (!cisdense) { 26486718818eSStefano Zampini ierr = MatSetType(C,((PetscObject)A)->type_name);CHKERRQ(ierr); 26496718818eSStefano Zampini } 265018992e5dSStefano Zampini ierr = MatSetUp(C);CHKERRQ(ierr); 2651baa3c1c6SHong Zhang 26524222ddf1SHong Zhang /* create data structure for reuse C */ 2653baa3c1c6SHong Zhang ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2654baa3c1c6SHong Zhang ierr = PetscNew(&atb);CHKERRQ(ierr); 26554222ddf1SHong Zhang cM = C->rmap->N; 26566718818eSStefano Zampini ierr = PetscMalloc2((size_t)cM*(size_t)cN,&atb->sendbuf,size,&atb->recvcounts);CHKERRQ(ierr); 26570acaeb71SStefano Zampini ierr = MatGetOwnershipRanges(C,&ranges);CHKERRQ(ierr); 26580acaeb71SStefano Zampini for (i=0; i<size; i++) atb->recvcounts[i] = (ranges[i+1] - ranges[i])*cN; 2659baa3c1c6SHong Zhang 26606718818eSStefano Zampini C->product->data = atb; 26616718818eSStefano Zampini C->product->destroy = MatDestroy_MatTransMatMult_MPIDense_MPIDense; 2662cb20be35SHong Zhang PetscFunctionReturn(0); 2663cb20be35SHong Zhang } 2664cb20be35SHong Zhang 26654222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat A, Mat B, PetscReal fill, Mat C) 2666cb20be35SHong Zhang { 2667cb20be35SHong Zhang PetscErrorCode ierr; 2668cc48ffa7SToby Isaac MPI_Comm comm; 2669cc48ffa7SToby Isaac PetscMPIInt i, size; 2670cc48ffa7SToby Isaac PetscInt maxRows, bufsiz; 2671cc48ffa7SToby Isaac PetscMPIInt tag; 26724222ddf1SHong Zhang PetscInt alg; 2673cc48ffa7SToby Isaac Mat_MatTransMultDense *abt; 26744222ddf1SHong Zhang Mat_Product *product = C->product; 26754222ddf1SHong Zhang PetscBool flg; 2676cc48ffa7SToby Isaac 2677cc48ffa7SToby Isaac PetscFunctionBegin; 26786718818eSStefano Zampini MatCheckProduct(C,4); 26796718818eSStefano Zampini if (C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty"); 26804222ddf1SHong Zhang /* check local size of A and B */ 2681637a0070SStefano Zampini if (A->cmap->n != B->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local column dimensions are incompatible, A (%D) != B (%D)",A->cmap->n,B->cmap->n); 2682cc48ffa7SToby Isaac 26834222ddf1SHong Zhang ierr = PetscStrcmp(product->alg,"allgatherv",&flg);CHKERRQ(ierr); 2684637a0070SStefano Zampini alg = flg ? 0 : 1; 2685cc48ffa7SToby Isaac 26864222ddf1SHong Zhang /* setup matrix product C */ 26874222ddf1SHong Zhang ierr = MatSetSizes(C,A->rmap->n,B->rmap->n,A->rmap->N,B->rmap->N);CHKERRQ(ierr); 26884222ddf1SHong Zhang ierr = MatSetType(C,MATMPIDENSE);CHKERRQ(ierr); 268918992e5dSStefano Zampini ierr = MatSetUp(C);CHKERRQ(ierr); 26904222ddf1SHong Zhang ierr = PetscObjectGetNewTag((PetscObject)C,&tag);CHKERRQ(ierr); 26914222ddf1SHong Zhang 26924222ddf1SHong Zhang /* create data structure for reuse C */ 26934222ddf1SHong Zhang ierr = PetscObjectGetComm((PetscObject)C,&comm);CHKERRQ(ierr); 2694cc48ffa7SToby Isaac ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2695cc48ffa7SToby Isaac ierr = PetscNew(&abt);CHKERRQ(ierr); 2696cc48ffa7SToby Isaac abt->tag = tag; 2697faa55883SToby Isaac abt->alg = alg; 2698faa55883SToby Isaac switch (alg) { 26994222ddf1SHong Zhang case 1: /* alg: "cyclic" */ 2700cc48ffa7SToby Isaac for (maxRows = 0, i = 0; i < size; i++) maxRows = PetscMax(maxRows, (B->rmap->range[i + 1] - B->rmap->range[i])); 2701cc48ffa7SToby Isaac bufsiz = A->cmap->N * maxRows; 2702cc48ffa7SToby Isaac ierr = PetscMalloc2(bufsiz,&(abt->buf[0]),bufsiz,&(abt->buf[1]));CHKERRQ(ierr); 2703faa55883SToby Isaac break; 27044222ddf1SHong Zhang default: /* alg: "allgatherv" */ 2705faa55883SToby Isaac ierr = PetscMalloc2(B->rmap->n * B->cmap->N, &(abt->buf[0]), B->rmap->N * B->cmap->N, &(abt->buf[1]));CHKERRQ(ierr); 2706faa55883SToby Isaac ierr = PetscMalloc2(size,&(abt->recvcounts),size+1,&(abt->recvdispls));CHKERRQ(ierr); 2707faa55883SToby Isaac for (i = 0; i <= size; i++) abt->recvdispls[i] = B->rmap->range[i] * A->cmap->N; 2708faa55883SToby Isaac for (i = 0; i < size; i++) abt->recvcounts[i] = abt->recvdispls[i + 1] - abt->recvdispls[i]; 2709faa55883SToby Isaac break; 2710faa55883SToby Isaac } 2711cc48ffa7SToby Isaac 27126718818eSStefano Zampini C->product->data = abt; 27136718818eSStefano Zampini C->product->destroy = MatDestroy_MatMatTransMult_MPIDense_MPIDense; 27144222ddf1SHong Zhang C->ops->mattransposemultnumeric = MatMatTransposeMultNumeric_MPIDense_MPIDense; 2715cc48ffa7SToby Isaac PetscFunctionReturn(0); 2716cc48ffa7SToby Isaac } 2717cc48ffa7SToby Isaac 2718faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(Mat A, Mat B, Mat C) 2719cc48ffa7SToby Isaac { 2720cc48ffa7SToby Isaac Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 27216718818eSStefano Zampini Mat_MatTransMultDense *abt; 2722cc48ffa7SToby Isaac PetscErrorCode ierr; 2723cc48ffa7SToby Isaac MPI_Comm comm; 2724cc48ffa7SToby Isaac PetscMPIInt rank,size, sendsiz, recvsiz, sendto, recvfrom, recvisfrom; 2725f4259b30SLisandro Dalcin PetscScalar *sendbuf, *recvbuf=NULL, *cv; 2726cc48ffa7SToby Isaac PetscInt i,cK=A->cmap->N,k,j,bn; 2727cc48ffa7SToby Isaac PetscScalar _DOne=1.0,_DZero=0.0; 2728637a0070SStefano Zampini const PetscScalar *av,*bv; 272923fff9afSBarry Smith PetscBLASInt cm, cn, ck, alda, blda = 0, clda; 2730cc48ffa7SToby Isaac MPI_Request reqs[2]; 2731cc48ffa7SToby Isaac const PetscInt *ranges; 2732cc48ffa7SToby Isaac 2733cc48ffa7SToby Isaac PetscFunctionBegin; 27346718818eSStefano Zampini MatCheckProduct(C,3); 27356718818eSStefano Zampini if (!C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 27366718818eSStefano Zampini abt = (Mat_MatTransMultDense*)C->product->data; 27376718818eSStefano Zampini ierr = PetscObjectGetComm((PetscObject)C,&comm);CHKERRQ(ierr); 2738cc48ffa7SToby Isaac ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 2739cc48ffa7SToby Isaac ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2740637a0070SStefano Zampini ierr = MatDenseGetArrayRead(a->A,&av);CHKERRQ(ierr); 2741637a0070SStefano Zampini ierr = MatDenseGetArrayRead(b->A,&bv);CHKERRQ(ierr); 27420acaeb71SStefano Zampini ierr = MatDenseGetArrayWrite(c->A,&cv);CHKERRQ(ierr); 2743637a0070SStefano Zampini ierr = MatDenseGetLDA(a->A,&i);CHKERRQ(ierr); 2744637a0070SStefano Zampini ierr = PetscBLASIntCast(i,&alda);CHKERRQ(ierr); 2745637a0070SStefano Zampini ierr = MatDenseGetLDA(b->A,&i);CHKERRQ(ierr); 2746637a0070SStefano Zampini ierr = PetscBLASIntCast(i,&blda);CHKERRQ(ierr); 2747637a0070SStefano Zampini ierr = MatDenseGetLDA(c->A,&i);CHKERRQ(ierr); 2748637a0070SStefano Zampini ierr = PetscBLASIntCast(i,&clda);CHKERRQ(ierr); 2749cc48ffa7SToby Isaac ierr = MatGetOwnershipRanges(B,&ranges);CHKERRQ(ierr); 2750cc48ffa7SToby Isaac bn = B->rmap->n; 2751637a0070SStefano Zampini if (blda == bn) { 2752637a0070SStefano Zampini sendbuf = (PetscScalar*)bv; 2753cc48ffa7SToby Isaac } else { 2754cc48ffa7SToby Isaac sendbuf = abt->buf[0]; 2755cc48ffa7SToby Isaac for (k = 0, i = 0; i < cK; i++) { 2756cc48ffa7SToby Isaac for (j = 0; j < bn; j++, k++) { 2757637a0070SStefano Zampini sendbuf[k] = bv[i * blda + j]; 2758cc48ffa7SToby Isaac } 2759cc48ffa7SToby Isaac } 2760cc48ffa7SToby Isaac } 2761cc48ffa7SToby Isaac if (size > 1) { 2762cc48ffa7SToby Isaac sendto = (rank + size - 1) % size; 2763cc48ffa7SToby Isaac recvfrom = (rank + size + 1) % size; 2764cc48ffa7SToby Isaac } else { 2765cc48ffa7SToby Isaac sendto = recvfrom = 0; 2766cc48ffa7SToby Isaac } 2767cc48ffa7SToby Isaac ierr = PetscBLASIntCast(cK,&ck);CHKERRQ(ierr); 2768cc48ffa7SToby Isaac ierr = PetscBLASIntCast(c->A->rmap->n,&cm);CHKERRQ(ierr); 2769cc48ffa7SToby Isaac recvisfrom = rank; 2770cc48ffa7SToby Isaac for (i = 0; i < size; i++) { 2771cc48ffa7SToby Isaac /* we have finished receiving in sending, bufs can be read/modified */ 2772cc48ffa7SToby Isaac PetscInt nextrecvisfrom = (recvisfrom + 1) % size; /* which process the next recvbuf will originate on */ 2773cc48ffa7SToby Isaac PetscInt nextbn = ranges[nextrecvisfrom + 1] - ranges[nextrecvisfrom]; 2774cc48ffa7SToby Isaac 2775cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2776cc48ffa7SToby Isaac /* start the cyclic sends from sendbuf, to recvbuf (which will switch to sendbuf) */ 2777cc48ffa7SToby Isaac sendsiz = cK * bn; 2778cc48ffa7SToby Isaac recvsiz = cK * nextbn; 2779cc48ffa7SToby Isaac recvbuf = (i & 1) ? abt->buf[0] : abt->buf[1]; 2780cc48ffa7SToby Isaac ierr = MPI_Isend(sendbuf, sendsiz, MPIU_SCALAR, sendto, abt->tag, comm, &reqs[0]);CHKERRQ(ierr); 2781cc48ffa7SToby Isaac ierr = MPI_Irecv(recvbuf, recvsiz, MPIU_SCALAR, recvfrom, abt->tag, comm, &reqs[1]);CHKERRQ(ierr); 2782cc48ffa7SToby Isaac } 2783cc48ffa7SToby Isaac 2784cc48ffa7SToby Isaac /* local aseq * sendbuf^T */ 2785cc48ffa7SToby Isaac ierr = PetscBLASIntCast(ranges[recvisfrom + 1] - ranges[recvisfrom], &cn);CHKERRQ(ierr); 278650ce3c9cSStefano Zampini if (cm && cn && ck) PetscStackCallBLAS("BLASgemm",BLASgemm_("N","T",&cm,&cn,&ck,&_DOne,av,&alda,sendbuf,&cn,&_DZero,cv + clda * ranges[recvisfrom],&clda)); 2787cc48ffa7SToby Isaac 2788cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2789cc48ffa7SToby Isaac /* wait for the sends and receives to complete, swap sendbuf and recvbuf */ 2790cc48ffa7SToby Isaac ierr = MPI_Waitall(2, reqs, MPI_STATUSES_IGNORE);CHKERRQ(ierr); 2791cc48ffa7SToby Isaac } 2792cc48ffa7SToby Isaac bn = nextbn; 2793cc48ffa7SToby Isaac recvisfrom = nextrecvisfrom; 2794cc48ffa7SToby Isaac sendbuf = recvbuf; 2795cc48ffa7SToby Isaac } 2796637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(a->A,&av);CHKERRQ(ierr); 2797637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(b->A,&bv);CHKERRQ(ierr); 27980acaeb71SStefano Zampini ierr = MatDenseRestoreArrayWrite(c->A,&cv);CHKERRQ(ierr); 27990acaeb71SStefano Zampini ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 28000acaeb71SStefano Zampini ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2801cc48ffa7SToby Isaac PetscFunctionReturn(0); 2802cc48ffa7SToby Isaac } 2803cc48ffa7SToby Isaac 2804faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(Mat A, Mat B, Mat C) 2805faa55883SToby Isaac { 2806faa55883SToby Isaac Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 28076718818eSStefano Zampini Mat_MatTransMultDense *abt; 2808faa55883SToby Isaac PetscErrorCode ierr; 2809faa55883SToby Isaac MPI_Comm comm; 2810637a0070SStefano Zampini PetscMPIInt size; 2811637a0070SStefano Zampini PetscScalar *cv, *sendbuf, *recvbuf; 2812637a0070SStefano Zampini const PetscScalar *av,*bv; 2813637a0070SStefano Zampini PetscInt blda,i,cK=A->cmap->N,k,j,bn; 2814faa55883SToby Isaac PetscScalar _DOne=1.0,_DZero=0.0; 2815637a0070SStefano Zampini PetscBLASInt cm, cn, ck, alda, clda; 2816faa55883SToby Isaac 2817faa55883SToby Isaac PetscFunctionBegin; 28186718818eSStefano Zampini MatCheckProduct(C,3); 28196718818eSStefano Zampini if (!C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 28206718818eSStefano Zampini abt = (Mat_MatTransMultDense*)C->product->data; 2821faa55883SToby Isaac ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 2822faa55883SToby Isaac ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2823637a0070SStefano Zampini ierr = MatDenseGetArrayRead(a->A,&av);CHKERRQ(ierr); 2824637a0070SStefano Zampini ierr = MatDenseGetArrayRead(b->A,&bv);CHKERRQ(ierr); 28250acaeb71SStefano Zampini ierr = MatDenseGetArrayWrite(c->A,&cv);CHKERRQ(ierr); 2826637a0070SStefano Zampini ierr = MatDenseGetLDA(a->A,&i);CHKERRQ(ierr); 2827637a0070SStefano Zampini ierr = PetscBLASIntCast(i,&alda);CHKERRQ(ierr); 2828637a0070SStefano Zampini ierr = MatDenseGetLDA(b->A,&blda);CHKERRQ(ierr); 2829637a0070SStefano Zampini ierr = MatDenseGetLDA(c->A,&i);CHKERRQ(ierr); 2830637a0070SStefano Zampini ierr = PetscBLASIntCast(i,&clda);CHKERRQ(ierr); 2831faa55883SToby Isaac /* copy transpose of B into buf[0] */ 2832faa55883SToby Isaac bn = B->rmap->n; 2833faa55883SToby Isaac sendbuf = abt->buf[0]; 2834faa55883SToby Isaac recvbuf = abt->buf[1]; 2835faa55883SToby Isaac for (k = 0, j = 0; j < bn; j++) { 2836faa55883SToby Isaac for (i = 0; i < cK; i++, k++) { 2837637a0070SStefano Zampini sendbuf[k] = bv[i * blda + j]; 2838faa55883SToby Isaac } 2839faa55883SToby Isaac } 2840637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(b->A,&bv);CHKERRQ(ierr); 2841faa55883SToby Isaac ierr = MPI_Allgatherv(sendbuf, bn * cK, MPIU_SCALAR, recvbuf, abt->recvcounts, abt->recvdispls, MPIU_SCALAR, comm);CHKERRQ(ierr); 2842faa55883SToby Isaac ierr = PetscBLASIntCast(cK,&ck);CHKERRQ(ierr); 2843faa55883SToby Isaac ierr = PetscBLASIntCast(c->A->rmap->n,&cm);CHKERRQ(ierr); 2844faa55883SToby Isaac ierr = PetscBLASIntCast(c->A->cmap->n,&cn);CHKERRQ(ierr); 284550ce3c9cSStefano Zampini if (cm && cn && ck) PetscStackCallBLAS("BLASgemm",BLASgemm_("N","N",&cm,&cn,&ck,&_DOne,av,&alda,recvbuf,&ck,&_DZero,cv,&clda)); 2846637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(a->A,&av);CHKERRQ(ierr); 2847637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(b->A,&bv);CHKERRQ(ierr); 28480acaeb71SStefano Zampini ierr = MatDenseRestoreArrayWrite(c->A,&cv);CHKERRQ(ierr); 28490acaeb71SStefano Zampini ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 28500acaeb71SStefano Zampini ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2851faa55883SToby Isaac PetscFunctionReturn(0); 2852faa55883SToby Isaac } 2853faa55883SToby Isaac 2854faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat A, Mat B, Mat C) 2855faa55883SToby Isaac { 28566718818eSStefano Zampini Mat_MatTransMultDense *abt; 2857faa55883SToby Isaac PetscErrorCode ierr; 2858faa55883SToby Isaac 2859faa55883SToby Isaac PetscFunctionBegin; 28606718818eSStefano Zampini MatCheckProduct(C,3); 28616718818eSStefano Zampini if (!C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 28626718818eSStefano Zampini abt = (Mat_MatTransMultDense*)C->product->data; 2863faa55883SToby Isaac switch (abt->alg) { 2864faa55883SToby Isaac case 1: 2865faa55883SToby Isaac ierr = MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(A, B, C);CHKERRQ(ierr); 2866faa55883SToby Isaac break; 2867faa55883SToby Isaac default: 2868faa55883SToby Isaac ierr = MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(A, B, C);CHKERRQ(ierr); 2869faa55883SToby Isaac break; 2870faa55883SToby Isaac } 2871faa55883SToby Isaac PetscFunctionReturn(0); 2872faa55883SToby Isaac } 2873faa55883SToby Isaac 28746718818eSStefano Zampini PetscErrorCode MatDestroy_MatMatMult_MPIDense_MPIDense(void *data) 2875320f2790SHong Zhang { 2876320f2790SHong Zhang PetscErrorCode ierr; 28776718818eSStefano Zampini Mat_MatMultDense *ab = (Mat_MatMultDense*)data; 2878320f2790SHong Zhang 2879320f2790SHong Zhang PetscFunctionBegin; 2880320f2790SHong Zhang ierr = MatDestroy(&ab->Ce);CHKERRQ(ierr); 2881320f2790SHong Zhang ierr = MatDestroy(&ab->Ae);CHKERRQ(ierr); 2882320f2790SHong Zhang ierr = MatDestroy(&ab->Be);CHKERRQ(ierr); 2883320f2790SHong Zhang ierr = PetscFree(ab);CHKERRQ(ierr); 2884320f2790SHong Zhang PetscFunctionReturn(0); 2885320f2790SHong Zhang } 2886320f2790SHong Zhang 28875242a7b1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 2888320f2790SHong Zhang PetscErrorCode MatMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 2889320f2790SHong Zhang { 2890320f2790SHong Zhang PetscErrorCode ierr; 28916718818eSStefano Zampini Mat_MatMultDense *ab; 2892320f2790SHong Zhang 2893320f2790SHong Zhang PetscFunctionBegin; 28946718818eSStefano Zampini MatCheckProduct(C,3); 28956718818eSStefano Zampini if (!C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Missing product data"); 28966718818eSStefano Zampini ab = (Mat_MatMultDense*)C->product->data; 2897de0a22f0SHong Zhang ierr = MatConvert_MPIDense_Elemental(A,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Ae);CHKERRQ(ierr); 2898de0a22f0SHong Zhang ierr = MatConvert_MPIDense_Elemental(B,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Be);CHKERRQ(ierr); 28994222ddf1SHong Zhang ierr = MatMatMultNumeric_Elemental(ab->Ae,ab->Be,ab->Ce);CHKERRQ(ierr); 2900de0a22f0SHong Zhang ierr = MatConvert(ab->Ce,MATMPIDENSE,MAT_REUSE_MATRIX,&C);CHKERRQ(ierr); 2901320f2790SHong Zhang PetscFunctionReturn(0); 2902320f2790SHong Zhang } 2903320f2790SHong Zhang 29046718818eSStefano Zampini static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat C) 2905320f2790SHong Zhang { 2906320f2790SHong Zhang PetscErrorCode ierr; 2907320f2790SHong Zhang Mat Ae,Be,Ce; 2908320f2790SHong Zhang Mat_MatMultDense *ab; 2909320f2790SHong Zhang 2910320f2790SHong Zhang PetscFunctionBegin; 29116718818eSStefano Zampini MatCheckProduct(C,4); 29126718818eSStefano Zampini if (C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty"); 29134222ddf1SHong Zhang /* check local size of A and B */ 2914320f2790SHong Zhang if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend) { 2915378336b6SHong Zhang SETERRQ4(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != B (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 2916320f2790SHong Zhang } 2917320f2790SHong Zhang 29184222ddf1SHong Zhang /* create elemental matrices Ae and Be */ 29194222ddf1SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)A), &Ae);CHKERRQ(ierr); 29204222ddf1SHong Zhang ierr = MatSetSizes(Ae,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 29214222ddf1SHong Zhang ierr = MatSetType(Ae,MATELEMENTAL);CHKERRQ(ierr); 29224222ddf1SHong Zhang ierr = MatSetUp(Ae);CHKERRQ(ierr); 29234222ddf1SHong Zhang ierr = MatSetOption(Ae,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 2924320f2790SHong Zhang 29254222ddf1SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)B), &Be);CHKERRQ(ierr); 29264222ddf1SHong Zhang ierr = MatSetSizes(Be,PETSC_DECIDE,PETSC_DECIDE,B->rmap->N,B->cmap->N);CHKERRQ(ierr); 29274222ddf1SHong Zhang ierr = MatSetType(Be,MATELEMENTAL);CHKERRQ(ierr); 29284222ddf1SHong Zhang ierr = MatSetUp(Be);CHKERRQ(ierr); 29294222ddf1SHong Zhang ierr = MatSetOption(Be,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 2930320f2790SHong Zhang 29314222ddf1SHong Zhang /* compute symbolic Ce = Ae*Be */ 29324222ddf1SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)C),&Ce);CHKERRQ(ierr); 29334222ddf1SHong Zhang ierr = MatMatMultSymbolic_Elemental(Ae,Be,fill,Ce);CHKERRQ(ierr); 29344222ddf1SHong Zhang 29354222ddf1SHong Zhang /* setup C */ 29364222ddf1SHong Zhang ierr = MatSetSizes(C,A->rmap->n,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 29374222ddf1SHong Zhang ierr = MatSetType(C,MATDENSE);CHKERRQ(ierr); 29384222ddf1SHong Zhang ierr = MatSetUp(C);CHKERRQ(ierr); 2939320f2790SHong Zhang 2940320f2790SHong Zhang /* create data structure for reuse Cdense */ 2941320f2790SHong Zhang ierr = PetscNew(&ab);CHKERRQ(ierr); 2942320f2790SHong Zhang ab->Ae = Ae; 2943320f2790SHong Zhang ab->Be = Be; 2944320f2790SHong Zhang ab->Ce = Ce; 29456718818eSStefano Zampini 29466718818eSStefano Zampini C->product->data = ab; 29476718818eSStefano Zampini C->product->destroy = MatDestroy_MatMatMult_MPIDense_MPIDense; 29484222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIDense; 2949320f2790SHong Zhang PetscFunctionReturn(0); 2950320f2790SHong Zhang } 29514222ddf1SHong Zhang #endif 29524222ddf1SHong Zhang /* ----------------------------------------------- */ 29534222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 29544222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_AB(Mat C) 2955320f2790SHong Zhang { 2956320f2790SHong Zhang PetscFunctionBegin; 29574222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIDense; 29584222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 2959320f2790SHong Zhang PetscFunctionReturn(0); 2960320f2790SHong Zhang } 29615242a7b1SHong Zhang #endif 296286aefd0dSHong Zhang 29634222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_AtB(Mat C) 29644222ddf1SHong Zhang { 29654222ddf1SHong Zhang Mat_Product *product = C->product; 29664222ddf1SHong Zhang Mat A = product->A,B=product->B; 29674222ddf1SHong Zhang 29684222ddf1SHong Zhang PetscFunctionBegin; 29694222ddf1SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) 29704222ddf1SHong Zhang SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, (%D, %D) != (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 29716718818eSStefano Zampini C->ops->transposematmultsymbolic = MatTransposeMatMultSymbolic_MPIDense_MPIDense; 29726718818eSStefano Zampini C->ops->productsymbolic = MatProductSymbolic_AtB; 29734222ddf1SHong Zhang PetscFunctionReturn(0); 29744222ddf1SHong Zhang } 29754222ddf1SHong Zhang 29764222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_ABt(Mat C) 29774222ddf1SHong Zhang { 29784222ddf1SHong Zhang PetscErrorCode ierr; 29794222ddf1SHong Zhang Mat_Product *product = C->product; 29804222ddf1SHong Zhang const char *algTypes[2] = {"allgatherv","cyclic"}; 29814222ddf1SHong Zhang PetscInt alg,nalg = 2; 29824222ddf1SHong Zhang PetscBool flg = PETSC_FALSE; 29834222ddf1SHong Zhang 29844222ddf1SHong Zhang PetscFunctionBegin; 29854222ddf1SHong Zhang /* Set default algorithm */ 29864222ddf1SHong Zhang alg = 0; /* default is allgatherv */ 29874222ddf1SHong Zhang ierr = PetscStrcmp(product->alg,"default",&flg);CHKERRQ(ierr); 29884222ddf1SHong Zhang if (flg) { 29894222ddf1SHong Zhang ierr = MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]);CHKERRQ(ierr); 29904222ddf1SHong Zhang } 29914222ddf1SHong Zhang 29924222ddf1SHong Zhang /* Get runtime option */ 29934222ddf1SHong Zhang if (product->api_user) { 29944222ddf1SHong Zhang ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatMatTransposeMult","Mat");CHKERRQ(ierr); 29954222ddf1SHong Zhang ierr = PetscOptionsEList("-matmattransmult_mpidense_mpidense_via","Algorithmic approach","MatMatTransposeMult",algTypes,nalg,algTypes[alg],&alg,&flg);CHKERRQ(ierr); 29964222ddf1SHong Zhang ierr = PetscOptionsEnd();CHKERRQ(ierr); 29974222ddf1SHong Zhang } else { 29984222ddf1SHong Zhang ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatProduct_ABt","Mat");CHKERRQ(ierr); 29994222ddf1SHong Zhang ierr = PetscOptionsEList("-matproduct_abt_mpidense_mpidense_via","Algorithmic approach","MatProduct_ABt",algTypes,nalg,algTypes[alg],&alg,&flg);CHKERRQ(ierr); 30004222ddf1SHong Zhang ierr = PetscOptionsEnd();CHKERRQ(ierr); 30014222ddf1SHong Zhang } 30024222ddf1SHong Zhang if (flg) { 30034222ddf1SHong Zhang ierr = MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]);CHKERRQ(ierr); 30044222ddf1SHong Zhang } 30054222ddf1SHong Zhang 30064222ddf1SHong Zhang C->ops->mattransposemultsymbolic = MatMatTransposeMultSymbolic_MPIDense_MPIDense; 30074222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_ABt; 30084222ddf1SHong Zhang PetscFunctionReturn(0); 30094222ddf1SHong Zhang } 30104222ddf1SHong Zhang 30114222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense(Mat C) 30124222ddf1SHong Zhang { 30134222ddf1SHong Zhang PetscErrorCode ierr; 30144222ddf1SHong Zhang Mat_Product *product = C->product; 30154222ddf1SHong Zhang 30164222ddf1SHong Zhang PetscFunctionBegin; 30174222ddf1SHong Zhang switch (product->type) { 30184222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 30194222ddf1SHong Zhang case MATPRODUCT_AB: 30204222ddf1SHong Zhang ierr = MatProductSetFromOptions_MPIDense_AB(C);CHKERRQ(ierr); 30214222ddf1SHong Zhang break; 30224222ddf1SHong Zhang #endif 30234222ddf1SHong Zhang case MATPRODUCT_AtB: 30244222ddf1SHong Zhang ierr = MatProductSetFromOptions_MPIDense_AtB(C);CHKERRQ(ierr); 30254222ddf1SHong Zhang break; 30264222ddf1SHong Zhang case MATPRODUCT_ABt: 30274222ddf1SHong Zhang ierr = MatProductSetFromOptions_MPIDense_ABt(C);CHKERRQ(ierr); 30284222ddf1SHong Zhang break; 30296718818eSStefano Zampini default: 30306718818eSStefano Zampini break; 30314222ddf1SHong Zhang } 30324222ddf1SHong Zhang PetscFunctionReturn(0); 30334222ddf1SHong Zhang } 3034