1be1d678aSKris Buschelman #define PETSCMAT_DLL 2be1d678aSKris Buschelman 3ed3cc1f0SBarry Smith /* 4ed3cc1f0SBarry Smith Basic functions for basic parallel dense matrices. 5ed3cc1f0SBarry Smith */ 6ed3cc1f0SBarry Smith 7*04fea9ffSBarry Smith 889ac3759SBarry Smith #include "src/mat/impls/dense/mpi/mpidense.h" /*I "petscmat.h" I*/ 9*04fea9ffSBarry Smith PetscInt Plapack_nprows,Plapack_npcols; 10*04fea9ffSBarry Smith MPI_Comm Plapack_comm_2d; 118965ea79SLois Curfman McInnes 12ba8c8a56SBarry Smith #undef __FUNCT__ 13ab92ecdeSBarry Smith #define __FUNCT__ "MatDenseGetLocalMatrix" 14ab92ecdeSBarry Smith /*@ 15ab92ecdeSBarry Smith 16ab92ecdeSBarry Smith MatDenseGetLocalMatrix - For a MATMPIDENSE or MATSEQDENSE matrix returns the sequential 17ab92ecdeSBarry Smith matrix that represents the operator. For sequential matrices it returns itself. 18ab92ecdeSBarry Smith 19ab92ecdeSBarry Smith Input Parameter: 20ab92ecdeSBarry Smith . A - the Seq or MPI dense matrix 21ab92ecdeSBarry Smith 22ab92ecdeSBarry Smith Output Parameter: 23ab92ecdeSBarry Smith . B - the inner matrix 24ab92ecdeSBarry Smith 258e6c10adSSatish Balay Level: intermediate 268e6c10adSSatish Balay 27ab92ecdeSBarry Smith @*/ 28ab92ecdeSBarry Smith PetscErrorCode MatDenseGetLocalMatrix(Mat A,Mat *B) 29ab92ecdeSBarry Smith { 30ab92ecdeSBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 31ab92ecdeSBarry Smith PetscErrorCode ierr; 32ab92ecdeSBarry Smith PetscTruth flg; 33ab92ecdeSBarry Smith 34ab92ecdeSBarry Smith PetscFunctionBegin; 35ab92ecdeSBarry Smith ierr = PetscTypeCompare((PetscObject)A,MATMPIDENSE,&flg);CHKERRQ(ierr); 36ab92ecdeSBarry Smith if (flg) { 37ab92ecdeSBarry Smith *B = mat->A; 38ab92ecdeSBarry Smith } else { 39ab92ecdeSBarry Smith *B = A; 40ab92ecdeSBarry Smith } 41ab92ecdeSBarry Smith PetscFunctionReturn(0); 42ab92ecdeSBarry Smith } 43ab92ecdeSBarry Smith 44ab92ecdeSBarry Smith #undef __FUNCT__ 45ba8c8a56SBarry Smith #define __FUNCT__ "MatGetRow_MPIDense" 46ba8c8a56SBarry Smith PetscErrorCode MatGetRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 47ba8c8a56SBarry Smith { 48ba8c8a56SBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 49ba8c8a56SBarry Smith PetscErrorCode ierr; 50899cda47SBarry Smith PetscInt lrow,rstart = A->rmap.rstart,rend = A->rmap.rend; 51ba8c8a56SBarry Smith 52ba8c8a56SBarry Smith PetscFunctionBegin; 53ba8c8a56SBarry Smith if (row < rstart || row >= rend) SETERRQ(PETSC_ERR_SUP,"only local rows") 54ba8c8a56SBarry Smith lrow = row - rstart; 55ba8c8a56SBarry Smith ierr = MatGetRow(mat->A,lrow,nz,(const PetscInt **)idx,(const PetscScalar **)v);CHKERRQ(ierr); 56ba8c8a56SBarry Smith PetscFunctionReturn(0); 57ba8c8a56SBarry Smith } 58ba8c8a56SBarry Smith 59ba8c8a56SBarry Smith #undef __FUNCT__ 60ba8c8a56SBarry Smith #define __FUNCT__ "MatRestoreRow_MPIDense" 61ba8c8a56SBarry Smith PetscErrorCode MatRestoreRow_MPIDense(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 62ba8c8a56SBarry Smith { 63ba8c8a56SBarry Smith PetscErrorCode ierr; 64ba8c8a56SBarry Smith 65ba8c8a56SBarry Smith PetscFunctionBegin; 66ba8c8a56SBarry Smith if (idx) {ierr = PetscFree(*idx);CHKERRQ(ierr);} 67ba8c8a56SBarry Smith if (v) {ierr = PetscFree(*v);CHKERRQ(ierr);} 68ba8c8a56SBarry Smith PetscFunctionReturn(0); 69ba8c8a56SBarry Smith } 70ba8c8a56SBarry Smith 710de54da6SSatish Balay EXTERN_C_BEGIN 724a2ae208SSatish Balay #undef __FUNCT__ 734a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIDense" 74be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPIDense(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *B) 750de54da6SSatish Balay { 760de54da6SSatish Balay Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 776849ba73SBarry Smith PetscErrorCode ierr; 78899cda47SBarry Smith PetscInt m = A->rmap.n,rstart = A->rmap.rstart; 7987828ca2SBarry Smith PetscScalar *array; 800de54da6SSatish Balay MPI_Comm comm; 810de54da6SSatish Balay 820de54da6SSatish Balay PetscFunctionBegin; 83899cda47SBarry Smith if (A->rmap.N != A->cmap.N) SETERRQ(PETSC_ERR_SUP,"Only square matrices supported."); 840de54da6SSatish Balay 850de54da6SSatish Balay /* The reuse aspect is not implemented efficiently */ 860de54da6SSatish Balay if (reuse) { ierr = MatDestroy(*B);CHKERRQ(ierr);} 870de54da6SSatish Balay 880de54da6SSatish Balay ierr = PetscObjectGetComm((PetscObject)(mdn->A),&comm);CHKERRQ(ierr); 890de54da6SSatish Balay ierr = MatGetArray(mdn->A,&array);CHKERRQ(ierr); 90f69a0ea3SMatthew Knepley ierr = MatCreate(comm,B);CHKERRQ(ierr); 91f69a0ea3SMatthew Knepley ierr = MatSetSizes(*B,m,m,m,m);CHKERRQ(ierr); 927adad957SLisandro Dalcin ierr = MatSetType(*B,((PetscObject)mdn->A)->type_name);CHKERRQ(ierr); 935c5985e7SKris Buschelman ierr = MatSeqDenseSetPreallocation(*B,array+m*rstart);CHKERRQ(ierr); 940de54da6SSatish Balay ierr = MatRestoreArray(mdn->A,&array);CHKERRQ(ierr); 950de54da6SSatish Balay ierr = MatAssemblyBegin(*B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 960de54da6SSatish Balay ierr = MatAssemblyEnd(*B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 970de54da6SSatish Balay 980de54da6SSatish Balay *iscopy = PETSC_TRUE; 990de54da6SSatish Balay PetscFunctionReturn(0); 1000de54da6SSatish Balay } 1010de54da6SSatish Balay EXTERN_C_END 1020de54da6SSatish Balay 1034a2ae208SSatish Balay #undef __FUNCT__ 1044a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIDense" 10513f74950SBarry Smith PetscErrorCode MatSetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],const PetscScalar v[],InsertMode addv) 1068965ea79SLois Curfman McInnes { 10739b7565bSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)mat->data; 108dfbe8321SBarry Smith PetscErrorCode ierr; 109899cda47SBarry Smith PetscInt i,j,rstart = mat->rmap.rstart,rend = mat->rmap.rend,row; 110273d9f13SBarry Smith PetscTruth roworiented = A->roworiented; 1118965ea79SLois Curfman McInnes 1123a40ed3dSBarry Smith PetscFunctionBegin; 1138965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 1145ef9f2a5SBarry Smith if (idxm[i] < 0) continue; 115899cda47SBarry Smith if (idxm[i] >= mat->rmap.N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 1168965ea79SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 1178965ea79SLois Curfman McInnes row = idxm[i] - rstart; 11839b7565bSBarry Smith if (roworiented) { 11939b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv);CHKERRQ(ierr); 1203a40ed3dSBarry Smith } else { 1218965ea79SLois Curfman McInnes for (j=0; j<n; j++) { 1225ef9f2a5SBarry Smith if (idxn[j] < 0) continue; 123899cda47SBarry Smith if (idxn[j] >= mat->cmap.N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 12439b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv);CHKERRQ(ierr); 12539b7565bSBarry Smith } 1268965ea79SLois Curfman McInnes } 1273a40ed3dSBarry Smith } else { 1283782ba37SSatish Balay if (!A->donotstash) { 12939b7565bSBarry Smith if (roworiented) { 1308798bf22SSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,idxm[i],n,idxn,v+i*n);CHKERRQ(ierr); 131d36fbae8SSatish Balay } else { 1328798bf22SSatish Balay ierr = MatStashValuesCol_Private(&mat->stash,idxm[i],n,idxn,v+i,m);CHKERRQ(ierr); 13339b7565bSBarry Smith } 134b49de8d1SLois Curfman McInnes } 135b49de8d1SLois Curfman McInnes } 1363782ba37SSatish Balay } 1373a40ed3dSBarry Smith PetscFunctionReturn(0); 138b49de8d1SLois Curfman McInnes } 139b49de8d1SLois Curfman McInnes 1404a2ae208SSatish Balay #undef __FUNCT__ 1414a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIDense" 14213f74950SBarry Smith PetscErrorCode MatGetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 143b49de8d1SLois Curfman McInnes { 144b49de8d1SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 145dfbe8321SBarry Smith PetscErrorCode ierr; 146899cda47SBarry Smith PetscInt i,j,rstart = mat->rmap.rstart,rend = mat->rmap.rend,row; 147b49de8d1SLois Curfman McInnes 1483a40ed3dSBarry Smith PetscFunctionBegin; 149b49de8d1SLois Curfman McInnes for (i=0; i<m; i++) { 15097e567efSBarry Smith if (idxm[i] < 0) continue; /* SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); */ 151899cda47SBarry Smith if (idxm[i] >= mat->rmap.N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 152b49de8d1SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 153b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 154b49de8d1SLois Curfman McInnes for (j=0; j<n; j++) { 15597e567efSBarry Smith if (idxn[j] < 0) continue; /* SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); */ 156899cda47SBarry Smith if (idxn[j] >= mat->cmap.N) { 15729bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 158a8c6a408SBarry Smith } 159b49de8d1SLois Curfman McInnes ierr = MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j);CHKERRQ(ierr); 160b49de8d1SLois Curfman McInnes } 161a8c6a408SBarry Smith } else { 16229bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 1638965ea79SLois Curfman McInnes } 1648965ea79SLois Curfman McInnes } 1653a40ed3dSBarry Smith PetscFunctionReturn(0); 1668965ea79SLois Curfman McInnes } 1678965ea79SLois Curfman McInnes 1684a2ae208SSatish Balay #undef __FUNCT__ 1694a2ae208SSatish Balay #define __FUNCT__ "MatGetArray_MPIDense" 170dfbe8321SBarry Smith PetscErrorCode MatGetArray_MPIDense(Mat A,PetscScalar *array[]) 171ff14e315SSatish Balay { 172ff14e315SSatish Balay Mat_MPIDense *a = (Mat_MPIDense*)A->data; 173dfbe8321SBarry Smith PetscErrorCode ierr; 174ff14e315SSatish Balay 1753a40ed3dSBarry Smith PetscFunctionBegin; 176ff14e315SSatish Balay ierr = MatGetArray(a->A,array);CHKERRQ(ierr); 1773a40ed3dSBarry Smith PetscFunctionReturn(0); 178ff14e315SSatish Balay } 179ff14e315SSatish Balay 1804a2ae208SSatish Balay #undef __FUNCT__ 1814a2ae208SSatish Balay #define __FUNCT__ "MatGetSubMatrix_MPIDense" 18213f74950SBarry Smith static PetscErrorCode MatGetSubMatrix_MPIDense(Mat A,IS isrow,IS iscol,PetscInt cs,MatReuse scall,Mat *B) 183ca3fa75bSLois Curfman McInnes { 184ca3fa75bSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data,*newmatd; 185ca3fa75bSLois Curfman McInnes Mat_SeqDense *lmat = (Mat_SeqDense*)mat->A->data; 1866849ba73SBarry Smith PetscErrorCode ierr; 18713f74950SBarry Smith PetscInt i,j,*irow,*icol,rstart,rend,nrows,ncols,nlrows,nlcols; 18887828ca2SBarry Smith PetscScalar *av,*bv,*v = lmat->v; 189ca3fa75bSLois Curfman McInnes Mat newmat; 190ca3fa75bSLois Curfman McInnes 191ca3fa75bSLois Curfman McInnes PetscFunctionBegin; 192ca3fa75bSLois Curfman McInnes ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr); 193ca3fa75bSLois Curfman McInnes ierr = ISGetIndices(iscol,&icol);CHKERRQ(ierr); 194b9b97703SBarry Smith ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr); 195b9b97703SBarry Smith ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr); 196ca3fa75bSLois Curfman McInnes 197ca3fa75bSLois Curfman McInnes /* No parallel redistribution currently supported! Should really check each index set 1987eba5e9cSLois Curfman McInnes to comfirm that it is OK. ... Currently supports only submatrix same partitioning as 1997eba5e9cSLois Curfman McInnes original matrix! */ 200ca3fa75bSLois Curfman McInnes 201ca3fa75bSLois Curfman McInnes ierr = MatGetLocalSize(A,&nlrows,&nlcols);CHKERRQ(ierr); 2027eba5e9cSLois Curfman McInnes ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr); 203ca3fa75bSLois Curfman McInnes 204ca3fa75bSLois Curfman McInnes /* Check submatrix call */ 205ca3fa75bSLois Curfman McInnes if (scall == MAT_REUSE_MATRIX) { 20629bbc08cSBarry Smith /* SETERRQ(PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */ 2077eba5e9cSLois Curfman McInnes /* Really need to test rows and column sizes! */ 208ca3fa75bSLois Curfman McInnes newmat = *B; 209ca3fa75bSLois Curfman McInnes } else { 210ca3fa75bSLois Curfman McInnes /* Create and fill new matrix */ 2117adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)A)->comm,&newmat);CHKERRQ(ierr); 212f69a0ea3SMatthew Knepley ierr = MatSetSizes(newmat,nrows,cs,PETSC_DECIDE,ncols);CHKERRQ(ierr); 2137adad957SLisandro Dalcin ierr = MatSetType(newmat,((PetscObject)A)->type_name);CHKERRQ(ierr); 214878740d9SKris Buschelman ierr = MatMPIDenseSetPreallocation(newmat,PETSC_NULL);CHKERRQ(ierr); 215ca3fa75bSLois Curfman McInnes } 216ca3fa75bSLois Curfman McInnes 217ca3fa75bSLois Curfman McInnes /* Now extract the data pointers and do the copy, column at a time */ 218ca3fa75bSLois Curfman McInnes newmatd = (Mat_MPIDense*)newmat->data; 219ca3fa75bSLois Curfman McInnes bv = ((Mat_SeqDense *)newmatd->A->data)->v; 220ca3fa75bSLois Curfman McInnes 221ca3fa75bSLois Curfman McInnes for (i=0; i<ncols; i++) { 222ca3fa75bSLois Curfman McInnes av = v + nlrows*icol[i]; 223ca3fa75bSLois Curfman McInnes for (j=0; j<nrows; j++) { 2247eba5e9cSLois Curfman McInnes *bv++ = av[irow[j] - rstart]; 225ca3fa75bSLois Curfman McInnes } 226ca3fa75bSLois Curfman McInnes } 227ca3fa75bSLois Curfman McInnes 228ca3fa75bSLois Curfman McInnes /* Assemble the matrices so that the correct flags are set */ 229ca3fa75bSLois Curfman McInnes ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 230ca3fa75bSLois Curfman McInnes ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 231ca3fa75bSLois Curfman McInnes 232ca3fa75bSLois Curfman McInnes /* Free work space */ 233ca3fa75bSLois Curfman McInnes ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr); 234ca3fa75bSLois Curfman McInnes ierr = ISRestoreIndices(iscol,&icol);CHKERRQ(ierr); 235ca3fa75bSLois Curfman McInnes *B = newmat; 236ca3fa75bSLois Curfman McInnes PetscFunctionReturn(0); 237ca3fa75bSLois Curfman McInnes } 238ca3fa75bSLois Curfman McInnes 2394a2ae208SSatish Balay #undef __FUNCT__ 2404a2ae208SSatish Balay #define __FUNCT__ "MatRestoreArray_MPIDense" 241dfbe8321SBarry Smith PetscErrorCode MatRestoreArray_MPIDense(Mat A,PetscScalar *array[]) 242ff14e315SSatish Balay { 2433a40ed3dSBarry Smith PetscFunctionBegin; 2443a40ed3dSBarry Smith PetscFunctionReturn(0); 245ff14e315SSatish Balay } 246ff14e315SSatish Balay 2474a2ae208SSatish Balay #undef __FUNCT__ 2484a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIDense" 249dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode) 2508965ea79SLois Curfman McInnes { 25139ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 2527adad957SLisandro Dalcin MPI_Comm comm = ((PetscObject)mat)->comm; 253dfbe8321SBarry Smith PetscErrorCode ierr; 25413f74950SBarry Smith PetscInt nstash,reallocs; 2558965ea79SLois Curfman McInnes InsertMode addv; 2568965ea79SLois Curfman McInnes 2573a40ed3dSBarry Smith PetscFunctionBegin; 2588965ea79SLois Curfman McInnes /* make sure all processors are either in INSERTMODE or ADDMODE */ 259ca161407SBarry Smith ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,comm);CHKERRQ(ierr); 2607056b6fcSBarry Smith if (addv == (ADD_VALUES|INSERT_VALUES)) { 26129bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Cannot mix adds/inserts on different procs"); 2628965ea79SLois Curfman McInnes } 263e0fa3b82SLois Curfman McInnes mat->insertmode = addv; /* in case this processor had no cache */ 2648965ea79SLois Curfman McInnes 2651e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap.range);CHKERRQ(ierr); 2668798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 267ae15b995SBarry Smith ierr = PetscInfo2(mdn->A,"Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 2683a40ed3dSBarry Smith PetscFunctionReturn(0); 2698965ea79SLois Curfman McInnes } 2708965ea79SLois Curfman McInnes 2714a2ae208SSatish Balay #undef __FUNCT__ 2724a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIDense" 273dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode) 2748965ea79SLois Curfman McInnes { 27539ddd567SLois Curfman McInnes Mat_MPIDense *mdn=(Mat_MPIDense*)mat->data; 2766849ba73SBarry Smith PetscErrorCode ierr; 27713f74950SBarry Smith PetscInt i,*row,*col,flg,j,rstart,ncols; 27813f74950SBarry Smith PetscMPIInt n; 27987828ca2SBarry Smith PetscScalar *val; 280e0fa3b82SLois Curfman McInnes InsertMode addv=mat->insertmode; 2818965ea79SLois Curfman McInnes 2823a40ed3dSBarry Smith PetscFunctionBegin; 2838965ea79SLois Curfman McInnes /* wait on receives */ 2847ef1d9bdSSatish Balay while (1) { 2858798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 2867ef1d9bdSSatish Balay if (!flg) break; 2878965ea79SLois Curfman McInnes 2887ef1d9bdSSatish Balay for (i=0; i<n;) { 2897ef1d9bdSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 2907ef1d9bdSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 2917ef1d9bdSSatish Balay if (j < n) ncols = j-i; 2927ef1d9bdSSatish Balay else ncols = n-i; 2937ef1d9bdSSatish Balay /* Now assemble all these values with a single function call */ 2947ef1d9bdSSatish Balay ierr = MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 2957ef1d9bdSSatish Balay i = j; 2968965ea79SLois Curfman McInnes } 2977ef1d9bdSSatish Balay } 2988798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 2998965ea79SLois Curfman McInnes 30039ddd567SLois Curfman McInnes ierr = MatAssemblyBegin(mdn->A,mode);CHKERRQ(ierr); 30139ddd567SLois Curfman McInnes ierr = MatAssemblyEnd(mdn->A,mode);CHKERRQ(ierr); 3028965ea79SLois Curfman McInnes 3036d4a8577SBarry Smith if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 30439ddd567SLois Curfman McInnes ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 3058965ea79SLois Curfman McInnes } 3063a40ed3dSBarry Smith PetscFunctionReturn(0); 3078965ea79SLois Curfman McInnes } 3088965ea79SLois Curfman McInnes 3094a2ae208SSatish Balay #undef __FUNCT__ 3104a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIDense" 311dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIDense(Mat A) 3128965ea79SLois Curfman McInnes { 313dfbe8321SBarry Smith PetscErrorCode ierr; 31439ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 3153a40ed3dSBarry Smith 3163a40ed3dSBarry Smith PetscFunctionBegin; 3173a40ed3dSBarry Smith ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 3183a40ed3dSBarry Smith PetscFunctionReturn(0); 3198965ea79SLois Curfman McInnes } 3208965ea79SLois Curfman McInnes 3218965ea79SLois Curfman McInnes /* the code does not do the diagonal entries correctly unless the 3228965ea79SLois Curfman McInnes matrix is square and the column and row owerships are identical. 3238965ea79SLois Curfman McInnes This is a BUG. The only way to fix it seems to be to access 3243501a2bdSLois Curfman McInnes mdn->A and mdn->B directly and not through the MatZeroRows() 3258965ea79SLois Curfman McInnes routine. 3268965ea79SLois Curfman McInnes */ 3274a2ae208SSatish Balay #undef __FUNCT__ 3284a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIDense" 329f4df32b1SMatthew Knepley PetscErrorCode MatZeroRows_MPIDense(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag) 3308965ea79SLois Curfman McInnes { 33139ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 3326849ba73SBarry Smith PetscErrorCode ierr; 333899cda47SBarry Smith PetscInt i,*owners = A->rmap.range; 33413f74950SBarry Smith PetscInt *nprocs,j,idx,nsends; 33513f74950SBarry Smith PetscInt nmax,*svalues,*starts,*owner,nrecvs; 3367adad957SLisandro Dalcin PetscInt *rvalues,tag = ((PetscObject)A)->tag,count,base,slen,*source; 33713f74950SBarry Smith PetscInt *lens,*lrows,*values; 33813f74950SBarry Smith PetscMPIInt n,imdex,rank = l->rank,size = l->size; 3397adad957SLisandro Dalcin MPI_Comm comm = ((PetscObject)A)->comm; 3408965ea79SLois Curfman McInnes MPI_Request *send_waits,*recv_waits; 3418965ea79SLois Curfman McInnes MPI_Status recv_status,*send_status; 34235d8aa7fSBarry Smith PetscTruth found; 3438965ea79SLois Curfman McInnes 3443a40ed3dSBarry Smith PetscFunctionBegin; 3458965ea79SLois Curfman McInnes /* first count number of contributors to each processor */ 34613f74950SBarry Smith ierr = PetscMalloc(2*size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr); 34713f74950SBarry Smith ierr = PetscMemzero(nprocs,2*size*sizeof(PetscInt));CHKERRQ(ierr); 34813f74950SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),&owner);CHKERRQ(ierr); /* see note*/ 3498965ea79SLois Curfman McInnes for (i=0; i<N; i++) { 3508965ea79SLois Curfman McInnes idx = rows[i]; 35135d8aa7fSBarry Smith found = PETSC_FALSE; 3528965ea79SLois Curfman McInnes for (j=0; j<size; j++) { 3538965ea79SLois Curfman McInnes if (idx >= owners[j] && idx < owners[j+1]) { 354c1dc657dSBarry Smith nprocs[2*j]++; nprocs[2*j+1] = 1; owner[i] = j; found = PETSC_TRUE; break; 3558965ea79SLois Curfman McInnes } 3568965ea79SLois Curfman McInnes } 35729bbc08cSBarry Smith if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range"); 3588965ea79SLois Curfman McInnes } 359c1dc657dSBarry Smith nsends = 0; for (i=0; i<size; i++) { nsends += nprocs[2*i+1];} 3608965ea79SLois Curfman McInnes 3618965ea79SLois Curfman McInnes /* inform other processors of number of messages and max length*/ 362c1dc657dSBarry Smith ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr); 3638965ea79SLois Curfman McInnes 3648965ea79SLois Curfman McInnes /* post receives: */ 36513f74950SBarry Smith ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(PetscInt),&rvalues);CHKERRQ(ierr); 366b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 3678965ea79SLois Curfman McInnes for (i=0; i<nrecvs; i++) { 36813f74950SBarry Smith ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 3698965ea79SLois Curfman McInnes } 3708965ea79SLois Curfman McInnes 3718965ea79SLois Curfman McInnes /* do sends: 3728965ea79SLois Curfman McInnes 1) starts[i] gives the starting index in svalues for stuff going to 3738965ea79SLois Curfman McInnes the ith processor 3748965ea79SLois Curfman McInnes */ 37513f74950SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),&svalues);CHKERRQ(ierr); 376b0a32e0cSBarry Smith ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 37713f74950SBarry Smith ierr = PetscMalloc((size+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr); 3788965ea79SLois Curfman McInnes starts[0] = 0; 379c1dc657dSBarry Smith for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];} 3808965ea79SLois Curfman McInnes for (i=0; i<N; i++) { 3818965ea79SLois Curfman McInnes svalues[starts[owner[i]]++] = rows[i]; 3828965ea79SLois Curfman McInnes } 3838965ea79SLois Curfman McInnes 3848965ea79SLois Curfman McInnes starts[0] = 0; 385c1dc657dSBarry Smith for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];} 3868965ea79SLois Curfman McInnes count = 0; 3878965ea79SLois Curfman McInnes for (i=0; i<size; i++) { 388c1dc657dSBarry Smith if (nprocs[2*i+1]) { 38913f74950SBarry Smith ierr = MPI_Isend(svalues+starts[i],nprocs[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 3908965ea79SLois Curfman McInnes } 3918965ea79SLois Curfman McInnes } 392606d414cSSatish Balay ierr = PetscFree(starts);CHKERRQ(ierr); 3938965ea79SLois Curfman McInnes 3948965ea79SLois Curfman McInnes base = owners[rank]; 3958965ea79SLois Curfman McInnes 3968965ea79SLois Curfman McInnes /* wait on receives */ 39713f74950SBarry Smith ierr = PetscMalloc(2*(nrecvs+1)*sizeof(PetscInt),&lens);CHKERRQ(ierr); 3988965ea79SLois Curfman McInnes source = lens + nrecvs; 3998965ea79SLois Curfman McInnes count = nrecvs; slen = 0; 4008965ea79SLois Curfman McInnes while (count) { 401ca161407SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 4028965ea79SLois Curfman McInnes /* unpack receives into our local space */ 40313f74950SBarry Smith ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr); 4048965ea79SLois Curfman McInnes source[imdex] = recv_status.MPI_SOURCE; 4058965ea79SLois Curfman McInnes lens[imdex] = n; 4068965ea79SLois Curfman McInnes slen += n; 4078965ea79SLois Curfman McInnes count--; 4088965ea79SLois Curfman McInnes } 409606d414cSSatish Balay ierr = PetscFree(recv_waits);CHKERRQ(ierr); 4108965ea79SLois Curfman McInnes 4118965ea79SLois Curfman McInnes /* move the data into the send scatter */ 41213f74950SBarry Smith ierr = PetscMalloc((slen+1)*sizeof(PetscInt),&lrows);CHKERRQ(ierr); 4138965ea79SLois Curfman McInnes count = 0; 4148965ea79SLois Curfman McInnes for (i=0; i<nrecvs; i++) { 4158965ea79SLois Curfman McInnes values = rvalues + i*nmax; 4168965ea79SLois Curfman McInnes for (j=0; j<lens[i]; j++) { 4178965ea79SLois Curfman McInnes lrows[count++] = values[j] - base; 4188965ea79SLois Curfman McInnes } 4198965ea79SLois Curfman McInnes } 420606d414cSSatish Balay ierr = PetscFree(rvalues);CHKERRQ(ierr); 421606d414cSSatish Balay ierr = PetscFree(lens);CHKERRQ(ierr); 422606d414cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 423606d414cSSatish Balay ierr = PetscFree(nprocs);CHKERRQ(ierr); 4248965ea79SLois Curfman McInnes 4258965ea79SLois Curfman McInnes /* actually zap the local rows */ 426f4df32b1SMatthew Knepley ierr = MatZeroRows(l->A,slen,lrows,diag);CHKERRQ(ierr); 427606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 4288965ea79SLois Curfman McInnes 4298965ea79SLois Curfman McInnes /* wait on sends */ 4308965ea79SLois Curfman McInnes if (nsends) { 431b0a32e0cSBarry Smith ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 432ca161407SBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 433606d414cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 4348965ea79SLois Curfman McInnes } 435606d414cSSatish Balay ierr = PetscFree(send_waits);CHKERRQ(ierr); 436606d414cSSatish Balay ierr = PetscFree(svalues);CHKERRQ(ierr); 4378965ea79SLois Curfman McInnes 4383a40ed3dSBarry Smith PetscFunctionReturn(0); 4398965ea79SLois Curfman McInnes } 4408965ea79SLois Curfman McInnes 4414a2ae208SSatish Balay #undef __FUNCT__ 4424a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIDense" 443dfbe8321SBarry Smith PetscErrorCode MatMult_MPIDense(Mat mat,Vec xx,Vec yy) 4448965ea79SLois Curfman McInnes { 44539ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 446dfbe8321SBarry Smith PetscErrorCode ierr; 447c456f294SBarry Smith 4483a40ed3dSBarry Smith PetscFunctionBegin; 449ca9f406cSSatish Balay ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 450ca9f406cSSatish Balay ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 45144cd7ae7SLois Curfman McInnes ierr = MatMult_SeqDense(mdn->A,mdn->lvec,yy);CHKERRQ(ierr); 4523a40ed3dSBarry Smith PetscFunctionReturn(0); 4538965ea79SLois Curfman McInnes } 4548965ea79SLois Curfman McInnes 4554a2ae208SSatish Balay #undef __FUNCT__ 4564a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIDense" 457dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz) 4588965ea79SLois Curfman McInnes { 45939ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 460dfbe8321SBarry Smith PetscErrorCode ierr; 461c456f294SBarry Smith 4623a40ed3dSBarry Smith PetscFunctionBegin; 463ca9f406cSSatish Balay ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 464ca9f406cSSatish Balay ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 46544cd7ae7SLois Curfman McInnes ierr = MatMultAdd_SeqDense(mdn->A,mdn->lvec,yy,zz);CHKERRQ(ierr); 4663a40ed3dSBarry Smith PetscFunctionReturn(0); 4678965ea79SLois Curfman McInnes } 4688965ea79SLois Curfman McInnes 4694a2ae208SSatish Balay #undef __FUNCT__ 4704a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIDense" 471dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIDense(Mat A,Vec xx,Vec yy) 472096963f5SLois Curfman McInnes { 473096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 474dfbe8321SBarry Smith PetscErrorCode ierr; 47587828ca2SBarry Smith PetscScalar zero = 0.0; 476096963f5SLois Curfman McInnes 4773a40ed3dSBarry Smith PetscFunctionBegin; 4782dcb1b2aSMatthew Knepley ierr = VecSet(yy,zero);CHKERRQ(ierr); 4797c922b88SBarry Smith ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr); 480ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 481ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 4823a40ed3dSBarry Smith PetscFunctionReturn(0); 483096963f5SLois Curfman McInnes } 484096963f5SLois Curfman McInnes 4854a2ae208SSatish Balay #undef __FUNCT__ 4864a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIDense" 487dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz) 488096963f5SLois Curfman McInnes { 489096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 490dfbe8321SBarry Smith PetscErrorCode ierr; 491096963f5SLois Curfman McInnes 4923a40ed3dSBarry Smith PetscFunctionBegin; 4933501a2bdSLois Curfman McInnes ierr = VecCopy(yy,zz);CHKERRQ(ierr); 4947c922b88SBarry Smith ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr); 495ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 496ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 4973a40ed3dSBarry Smith PetscFunctionReturn(0); 498096963f5SLois Curfman McInnes } 499096963f5SLois Curfman McInnes 5004a2ae208SSatish Balay #undef __FUNCT__ 5014a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIDense" 502dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIDense(Mat A,Vec v) 5038965ea79SLois Curfman McInnes { 50439ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 505096963f5SLois Curfman McInnes Mat_SeqDense *aloc = (Mat_SeqDense*)a->A->data; 506dfbe8321SBarry Smith PetscErrorCode ierr; 507899cda47SBarry Smith PetscInt len,i,n,m = A->rmap.n,radd; 50887828ca2SBarry Smith PetscScalar *x,zero = 0.0; 509ed3cc1f0SBarry Smith 5103a40ed3dSBarry Smith PetscFunctionBegin; 5112dcb1b2aSMatthew Knepley ierr = VecSet(v,zero);CHKERRQ(ierr); 5121ebc52fbSHong Zhang ierr = VecGetArray(v,&x);CHKERRQ(ierr); 513096963f5SLois Curfman McInnes ierr = VecGetSize(v,&n);CHKERRQ(ierr); 514899cda47SBarry Smith if (n != A->rmap.N) SETERRQ(PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec"); 515899cda47SBarry Smith len = PetscMin(a->A->rmap.n,a->A->cmap.n); 516899cda47SBarry Smith radd = A->rmap.rstart*m; 51744cd7ae7SLois Curfman McInnes for (i=0; i<len; i++) { 518096963f5SLois Curfman McInnes x[i] = aloc->v[radd + i*m + i]; 519096963f5SLois Curfman McInnes } 5201ebc52fbSHong Zhang ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 5213a40ed3dSBarry Smith PetscFunctionReturn(0); 5228965ea79SLois Curfman McInnes } 5238965ea79SLois Curfman McInnes 5244a2ae208SSatish Balay #undef __FUNCT__ 5254a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIDense" 526dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIDense(Mat mat) 5278965ea79SLois Curfman McInnes { 5283501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 529dfbe8321SBarry Smith PetscErrorCode ierr; 53001b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK) 53101b82886SBarry Smith Mat_Plapack *lu=(Mat_Plapack*)(mat->spptr); 53201b82886SBarry Smith #endif 533ed3cc1f0SBarry Smith 5343a40ed3dSBarry Smith PetscFunctionBegin; 53594d884c6SBarry Smith 536aa482453SBarry Smith #if defined(PETSC_USE_LOG) 537899cda47SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D, Cols=%D",mat->rmap.N,mat->cmap.N); 5388965ea79SLois Curfman McInnes #endif 5398798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 5403501a2bdSLois Curfman McInnes ierr = MatDestroy(mdn->A);CHKERRQ(ierr); 54105b42c5fSBarry Smith if (mdn->lvec) {ierr = VecDestroy(mdn->lvec);CHKERRQ(ierr);} 54205b42c5fSBarry Smith if (mdn->Mvctx) {ierr = VecScatterDestroy(mdn->Mvctx);CHKERRQ(ierr);} 54301b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK) 54401b82886SBarry Smith if (lu->CleanUpPlapack) { 54562b4c0b3SBarry Smith ierr = PLA_Obj_free(&lu->A);CHKERRQ(ierr); 54662b4c0b3SBarry Smith ierr = PLA_Obj_free (&lu->pivots);CHKERRQ(ierr); 54762b4c0b3SBarry Smith ierr = PLA_Temp_free(&lu->templ);CHKERRQ(ierr); 54809d27a7eSBarry Smith 54901b82886SBarry Smith 55001b82886SBarry Smith ierr = ISDestroy(lu->is_pla);CHKERRQ(ierr); 55101b82886SBarry Smith ierr = ISDestroy(lu->is_petsc);CHKERRQ(ierr); 55201b82886SBarry Smith ierr = VecScatterDestroy(lu->ctx);CHKERRQ(ierr); 553622d7880SLois Curfman McInnes } 55401b82886SBarry Smith #endif 55501b82886SBarry Smith 556606d414cSSatish Balay ierr = PetscFree(mdn);CHKERRQ(ierr); 557dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 558901853e0SKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 559901853e0SKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMPIDenseSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 5604ae313f4SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMult_mpiaij_mpidense_C","",PETSC_NULL);CHKERRQ(ierr); 5614ae313f4SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C","",PETSC_NULL);CHKERRQ(ierr); 5624ae313f4SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C","",PETSC_NULL);CHKERRQ(ierr); 5633a40ed3dSBarry Smith PetscFunctionReturn(0); 5648965ea79SLois Curfman McInnes } 56539ddd567SLois Curfman McInnes 5664a2ae208SSatish Balay #undef __FUNCT__ 5674a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense_Binary" 5686849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_Binary(Mat mat,PetscViewer viewer) 5698965ea79SLois Curfman McInnes { 57039ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 571dfbe8321SBarry Smith PetscErrorCode ierr; 572aa05aa95SBarry Smith PetscViewerFormat format; 573aa05aa95SBarry Smith int fd; 574aa05aa95SBarry Smith PetscInt header[4],mmax,N = mat->cmap.N,i,j,m,k; 575aa05aa95SBarry Smith PetscMPIInt rank,tag = ((PetscObject)viewer)->tag,size; 576578230a0SSatish Balay PetscScalar *work,*v,*vv; 577aa05aa95SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)mdn->A->data; 578aa05aa95SBarry Smith MPI_Status status; 5797056b6fcSBarry Smith 5803a40ed3dSBarry Smith PetscFunctionBegin; 58139ddd567SLois Curfman McInnes if (mdn->size == 1) { 58239ddd567SLois Curfman McInnes ierr = MatView(mdn->A,viewer);CHKERRQ(ierr); 583aa05aa95SBarry Smith } else { 584aa05aa95SBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 5857adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr); 5867adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)mat)->comm,&size);CHKERRQ(ierr); 587aa05aa95SBarry Smith 588aa05aa95SBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 589aa05aa95SBarry Smith if (format == PETSC_VIEWER_BINARY_NATIVE) { 590aa05aa95SBarry Smith 591aa05aa95SBarry Smith if (!rank) { 592aa05aa95SBarry Smith /* store the matrix as a dense matrix */ 593aa05aa95SBarry Smith header[0] = MAT_FILE_COOKIE; 594aa05aa95SBarry Smith header[1] = mat->rmap.N; 595aa05aa95SBarry Smith header[2] = N; 596aa05aa95SBarry Smith header[3] = MATRIX_BINARY_FORMAT_DENSE; 597aa05aa95SBarry Smith ierr = PetscBinaryWrite(fd,header,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 598aa05aa95SBarry Smith 599aa05aa95SBarry Smith /* get largest work array needed for transposing array */ 600aa05aa95SBarry Smith mmax = mat->rmap.n; 601aa05aa95SBarry Smith for (i=1; i<size; i++) { 602aa05aa95SBarry Smith mmax = PetscMax(mmax,mat->rmap.range[i+1] - mat->rmap.range[i]); 6038965ea79SLois Curfman McInnes } 604aa05aa95SBarry Smith ierr = PetscMalloc(mmax*N*sizeof(PetscScalar),&work);CHKERRQ(ierr); 605aa05aa95SBarry Smith 606aa05aa95SBarry Smith /* write out local array, by rows */ 607aa05aa95SBarry Smith m = mat->rmap.n; 608aa05aa95SBarry Smith v = a->v; 609aa05aa95SBarry Smith for (j=0; j<N; j++) { 610aa05aa95SBarry Smith for (i=0; i<m; i++) { 611578230a0SSatish Balay work[j + i*N] = *v++; 612aa05aa95SBarry Smith } 613aa05aa95SBarry Smith } 614aa05aa95SBarry Smith ierr = PetscBinaryWrite(fd,work,m*N,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr); 615aa05aa95SBarry Smith /* get largest work array to receive messages from other processes, excludes process zero */ 616aa05aa95SBarry Smith mmax = 0; 617aa05aa95SBarry Smith for (i=1; i<size; i++) { 618aa05aa95SBarry Smith mmax = PetscMax(mmax,mat->rmap.range[i+1] - mat->rmap.range[i]); 619aa05aa95SBarry Smith } 620578230a0SSatish Balay ierr = PetscMalloc(mmax*N*sizeof(PetscScalar),&vv);CHKERRQ(ierr); 621578230a0SSatish Balay v = vv; 622aa05aa95SBarry Smith for (k=1; k<size; k++) { 623aa05aa95SBarry Smith m = mat->rmap.range[k+1] - mat->rmap.range[k]; 6247adad957SLisandro Dalcin ierr = MPI_Recv(v,m*N,MPIU_SCALAR,k,tag,((PetscObject)mat)->comm,&status);CHKERRQ(ierr); 625aa05aa95SBarry Smith 626aa05aa95SBarry Smith for (j=0; j<N; j++) { 627aa05aa95SBarry Smith for (i=0; i<m; i++) { 628578230a0SSatish Balay work[j + i*N] = *v++; 629aa05aa95SBarry Smith } 630aa05aa95SBarry Smith } 631aa05aa95SBarry Smith ierr = PetscBinaryWrite(fd,work,m*N,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr); 632aa05aa95SBarry Smith } 633aa05aa95SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 634578230a0SSatish Balay ierr = PetscFree(vv);CHKERRQ(ierr); 635aa05aa95SBarry Smith } else { 6367adad957SLisandro Dalcin ierr = MPI_Send(a->v,mat->rmap.n*mat->cmap.N,MPIU_SCALAR,0,tag,((PetscObject)mat)->comm);CHKERRQ(ierr); 637aa05aa95SBarry Smith } 638aa05aa95SBarry Smith } 639aa05aa95SBarry Smith } 6403a40ed3dSBarry Smith PetscFunctionReturn(0); 6418965ea79SLois Curfman McInnes } 6428965ea79SLois Curfman McInnes 6434a2ae208SSatish Balay #undef __FUNCT__ 6444a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense_ASCIIorDraworSocket" 6456849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 6468965ea79SLois Curfman McInnes { 64739ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 648dfbe8321SBarry Smith PetscErrorCode ierr; 64932dcc486SBarry Smith PetscMPIInt size = mdn->size,rank = mdn->rank; 650b0a32e0cSBarry Smith PetscViewerType vtype; 65132077d6dSBarry Smith PetscTruth iascii,isdraw; 652b0a32e0cSBarry Smith PetscViewer sviewer; 653f3ef73ceSBarry Smith PetscViewerFormat format; 65401b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK) 65501b82886SBarry Smith Mat_Plapack *lu=(Mat_Plapack*)(mat->spptr); 65601b82886SBarry Smith #endif 6578965ea79SLois Curfman McInnes 6583a40ed3dSBarry Smith PetscFunctionBegin; 65932077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 660fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 66132077d6dSBarry Smith if (iascii) { 662b0a32e0cSBarry Smith ierr = PetscViewerGetType(viewer,&vtype);CHKERRQ(ierr); 663b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 664456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 6654e220ebcSLois Curfman McInnes MatInfo info; 666888f2ed8SSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 667899cda47SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer," [%d] local rows %D nz %D nz alloced %D mem %D \n",rank,mat->rmap.n, 66877431f27SBarry Smith (PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory);CHKERRQ(ierr); 669b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 6703501a2bdSLois Curfman McInnes ierr = VecScatterView(mdn->Mvctx,viewer);CHKERRQ(ierr); 67101b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK) 67201b82886SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"PLAPACK run parameters:\n");CHKERRQ(ierr); 673*04fea9ffSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," Processor mesh: nprows %d, npcols %d\n",Plapack_nprows, Plapack_npcols);CHKERRQ(ierr); 67401b82886SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," Distr. block size nb: %d \n",lu->nb);CHKERRQ(ierr); 67501b82886SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," Error checking: %d\n",lu->ierror);CHKERRQ(ierr); 67601b82886SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," Algorithmic block size: %d\n",lu->nb_alg);CHKERRQ(ierr); 67701b82886SBarry Smith #endif 6783a40ed3dSBarry Smith PetscFunctionReturn(0); 679fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 6803a40ed3dSBarry Smith PetscFunctionReturn(0); 6818965ea79SLois Curfman McInnes } 682f1af5d2fSBarry Smith } else if (isdraw) { 683b0a32e0cSBarry Smith PetscDraw draw; 684f1af5d2fSBarry Smith PetscTruth isnull; 685f1af5d2fSBarry Smith 686b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 687b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 688f1af5d2fSBarry Smith if (isnull) PetscFunctionReturn(0); 689f1af5d2fSBarry Smith } 69077ed5343SBarry Smith 6918965ea79SLois Curfman McInnes if (size == 1) { 69239ddd567SLois Curfman McInnes ierr = MatView(mdn->A,viewer);CHKERRQ(ierr); 6933a40ed3dSBarry Smith } else { 6948965ea79SLois Curfman McInnes /* assemble the entire matrix onto first processor. */ 6958965ea79SLois Curfman McInnes Mat A; 696899cda47SBarry Smith PetscInt M = mat->rmap.N,N = mat->cmap.N,m,row,i,nz; 697ba8c8a56SBarry Smith PetscInt *cols; 698ba8c8a56SBarry Smith PetscScalar *vals; 6998965ea79SLois Curfman McInnes 7007adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr); 7018965ea79SLois Curfman McInnes if (!rank) { 702f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 7033a40ed3dSBarry Smith } else { 704f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 7058965ea79SLois Curfman McInnes } 7067adad957SLisandro Dalcin /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */ 707878740d9SKris Buschelman ierr = MatSetType(A,MATMPIDENSE);CHKERRQ(ierr); 708878740d9SKris Buschelman ierr = MatMPIDenseSetPreallocation(A,PETSC_NULL); 70952e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr); 7108965ea79SLois Curfman McInnes 71139ddd567SLois Curfman McInnes /* Copy the matrix ... This isn't the most efficient means, 71239ddd567SLois Curfman McInnes but it's quick for now */ 71351022da4SBarry Smith A->insertmode = INSERT_VALUES; 714899cda47SBarry Smith row = mat->rmap.rstart; m = mdn->A->rmap.n; 7158965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 716ba8c8a56SBarry Smith ierr = MatGetRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 717ba8c8a56SBarry Smith ierr = MatSetValues_MPIDense(A,1,&row,nz,cols,vals,INSERT_VALUES);CHKERRQ(ierr); 718ba8c8a56SBarry Smith ierr = MatRestoreRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 71939ddd567SLois Curfman McInnes row++; 7208965ea79SLois Curfman McInnes } 7218965ea79SLois Curfman McInnes 7226d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 7236d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 724b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 725b9b97703SBarry Smith if (!rank) { 7266831982aSBarry Smith ierr = MatView(((Mat_MPIDense*)(A->data))->A,sviewer);CHKERRQ(ierr); 7278965ea79SLois Curfman McInnes } 728b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 729b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 7308965ea79SLois Curfman McInnes ierr = MatDestroy(A);CHKERRQ(ierr); 7318965ea79SLois Curfman McInnes } 7323a40ed3dSBarry Smith PetscFunctionReturn(0); 7338965ea79SLois Curfman McInnes } 7348965ea79SLois Curfman McInnes 7354a2ae208SSatish Balay #undef __FUNCT__ 7364a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense" 737dfbe8321SBarry Smith PetscErrorCode MatView_MPIDense(Mat mat,PetscViewer viewer) 7388965ea79SLois Curfman McInnes { 739dfbe8321SBarry Smith PetscErrorCode ierr; 74032077d6dSBarry Smith PetscTruth iascii,isbinary,isdraw,issocket; 7418965ea79SLois Curfman McInnes 742433994e6SBarry Smith PetscFunctionBegin; 7430f5bd95cSBarry Smith 74432077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 745fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 746b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 747fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 7480f5bd95cSBarry Smith 74932077d6dSBarry Smith if (iascii || issocket || isdraw) { 750f1af5d2fSBarry Smith ierr = MatView_MPIDense_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 7510f5bd95cSBarry Smith } else if (isbinary) { 7523a40ed3dSBarry Smith ierr = MatView_MPIDense_Binary(mat,viewer);CHKERRQ(ierr); 7535cd90555SBarry Smith } else { 754958c9bccSBarry Smith SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPI dense matrix",((PetscObject)viewer)->type_name); 7558965ea79SLois Curfman McInnes } 7563a40ed3dSBarry Smith PetscFunctionReturn(0); 7578965ea79SLois Curfman McInnes } 7588965ea79SLois Curfman McInnes 7594a2ae208SSatish Balay #undef __FUNCT__ 7604a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIDense" 761dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info) 7628965ea79SLois Curfman McInnes { 7633501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 7643501a2bdSLois Curfman McInnes Mat mdn = mat->A; 765dfbe8321SBarry Smith PetscErrorCode ierr; 766329f5518SBarry Smith PetscReal isend[5],irecv[5]; 7678965ea79SLois Curfman McInnes 7683a40ed3dSBarry Smith PetscFunctionBegin; 769899cda47SBarry Smith info->rows_global = (double)A->rmap.N; 770899cda47SBarry Smith info->columns_global = (double)A->cmap.N; 771899cda47SBarry Smith info->rows_local = (double)A->rmap.n; 772899cda47SBarry Smith info->columns_local = (double)A->cmap.N; 7734e220ebcSLois Curfman McInnes info->block_size = 1.0; 7744e220ebcSLois Curfman McInnes ierr = MatGetInfo(mdn,MAT_LOCAL,info);CHKERRQ(ierr); 7754e220ebcSLois Curfman McInnes isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 7764e220ebcSLois Curfman McInnes isend[3] = info->memory; isend[4] = info->mallocs; 7778965ea79SLois Curfman McInnes if (flag == MAT_LOCAL) { 7784e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 7794e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 7804e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 7814e220ebcSLois Curfman McInnes info->memory = isend[3]; 7824e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 7838965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 7847adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,((PetscObject)A)->comm);CHKERRQ(ierr); 7854e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7864e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7874e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7884e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7894e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7908965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 7917adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,((PetscObject)A)->comm);CHKERRQ(ierr); 7924e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7934e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7944e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7954e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7964e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7978965ea79SLois Curfman McInnes } 7984e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 7994e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 8004e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 8013a40ed3dSBarry Smith PetscFunctionReturn(0); 8028965ea79SLois Curfman McInnes } 8038965ea79SLois Curfman McInnes 8044a2ae208SSatish Balay #undef __FUNCT__ 8054a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIDense" 8064e0d8c25SBarry Smith PetscErrorCode MatSetOption_MPIDense(Mat A,MatOption op,PetscTruth flg) 8078965ea79SLois Curfman McInnes { 80839ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 809dfbe8321SBarry Smith PetscErrorCode ierr; 8108965ea79SLois Curfman McInnes 8113a40ed3dSBarry Smith PetscFunctionBegin; 81212c028f9SKris Buschelman switch (op) { 813512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 81412c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 81512c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 8164e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 81712c028f9SKris Buschelman break; 81812c028f9SKris Buschelman case MAT_ROW_ORIENTED: 8194e0d8c25SBarry Smith a->roworiented = flg; 8204e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 82112c028f9SKris Buschelman break; 8224e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 82312c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 824290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 82512c028f9SKris Buschelman break; 82612c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 8274e0d8c25SBarry Smith a->donotstash = flg; 82812c028f9SKris Buschelman break; 82977e54ba9SKris Buschelman case MAT_SYMMETRIC: 83077e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 8319a4540c5SBarry Smith case MAT_HERMITIAN: 8329a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 833600fe468SBarry Smith case MAT_IGNORE_LOWER_TRIANGULAR: 834290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 83577e54ba9SKris Buschelman break; 83612c028f9SKris Buschelman default: 837600fe468SBarry Smith SETERRQ1(PETSC_ERR_SUP,"unknown option %s",MatOptions[op]); 8383a40ed3dSBarry Smith } 8393a40ed3dSBarry Smith PetscFunctionReturn(0); 8408965ea79SLois Curfman McInnes } 8418965ea79SLois Curfman McInnes 8428965ea79SLois Curfman McInnes 8434a2ae208SSatish Balay #undef __FUNCT__ 8444a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIDense" 845dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIDense(Mat A,Vec ll,Vec rr) 8465b2fa520SLois Curfman McInnes { 8475b2fa520SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 8485b2fa520SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)mdn->A->data; 84987828ca2SBarry Smith PetscScalar *l,*r,x,*v; 850dfbe8321SBarry Smith PetscErrorCode ierr; 851899cda47SBarry Smith PetscInt i,j,s2a,s3a,s2,s3,m=mdn->A->rmap.n,n=mdn->A->cmap.n; 8525b2fa520SLois Curfman McInnes 8535b2fa520SLois Curfman McInnes PetscFunctionBegin; 85472d926a5SLois Curfman McInnes ierr = MatGetLocalSize(A,&s2,&s3);CHKERRQ(ierr); 8555b2fa520SLois Curfman McInnes if (ll) { 85672d926a5SLois Curfman McInnes ierr = VecGetLocalSize(ll,&s2a);CHKERRQ(ierr); 857175be7b4SMatthew Knepley if (s2a != s2) SETERRQ2(PETSC_ERR_ARG_SIZ,"Left scaling vector non-conforming local size, %d != %d.", s2a, s2); 8581ebc52fbSHong Zhang ierr = VecGetArray(ll,&l);CHKERRQ(ierr); 8595b2fa520SLois Curfman McInnes for (i=0; i<m; i++) { 8605b2fa520SLois Curfman McInnes x = l[i]; 8615b2fa520SLois Curfman McInnes v = mat->v + i; 8625b2fa520SLois Curfman McInnes for (j=0; j<n; j++) { (*v) *= x; v+= m;} 8635b2fa520SLois Curfman McInnes } 8641ebc52fbSHong Zhang ierr = VecRestoreArray(ll,&l);CHKERRQ(ierr); 865efee365bSSatish Balay ierr = PetscLogFlops(n*m);CHKERRQ(ierr); 8665b2fa520SLois Curfman McInnes } 8675b2fa520SLois Curfman McInnes if (rr) { 868175be7b4SMatthew Knepley ierr = VecGetLocalSize(rr,&s3a);CHKERRQ(ierr); 869175be7b4SMatthew Knepley if (s3a != s3) SETERRQ2(PETSC_ERR_ARG_SIZ,"Right scaling vec non-conforming local size, %d != %d.", s3a, s3); 870ca9f406cSSatish Balay ierr = VecScatterBegin(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 871ca9f406cSSatish Balay ierr = VecScatterEnd(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 8721ebc52fbSHong Zhang ierr = VecGetArray(mdn->lvec,&r);CHKERRQ(ierr); 8735b2fa520SLois Curfman McInnes for (i=0; i<n; i++) { 8745b2fa520SLois Curfman McInnes x = r[i]; 8755b2fa520SLois Curfman McInnes v = mat->v + i*m; 8765b2fa520SLois Curfman McInnes for (j=0; j<m; j++) { (*v++) *= x;} 8775b2fa520SLois Curfman McInnes } 8781ebc52fbSHong Zhang ierr = VecRestoreArray(mdn->lvec,&r);CHKERRQ(ierr); 879efee365bSSatish Balay ierr = PetscLogFlops(n*m);CHKERRQ(ierr); 8805b2fa520SLois Curfman McInnes } 8815b2fa520SLois Curfman McInnes PetscFunctionReturn(0); 8825b2fa520SLois Curfman McInnes } 8835b2fa520SLois Curfman McInnes 8844a2ae208SSatish Balay #undef __FUNCT__ 8854a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIDense" 886dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIDense(Mat A,NormType type,PetscReal *nrm) 887096963f5SLois Curfman McInnes { 8883501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 8893501a2bdSLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)mdn->A->data; 890dfbe8321SBarry Smith PetscErrorCode ierr; 89113f74950SBarry Smith PetscInt i,j; 892329f5518SBarry Smith PetscReal sum = 0.0; 89387828ca2SBarry Smith PetscScalar *v = mat->v; 8943501a2bdSLois Curfman McInnes 8953a40ed3dSBarry Smith PetscFunctionBegin; 8963501a2bdSLois Curfman McInnes if (mdn->size == 1) { 897064f8208SBarry Smith ierr = MatNorm(mdn->A,type,nrm);CHKERRQ(ierr); 8983501a2bdSLois Curfman McInnes } else { 8993501a2bdSLois Curfman McInnes if (type == NORM_FROBENIUS) { 900899cda47SBarry Smith for (i=0; i<mdn->A->cmap.n*mdn->A->rmap.n; i++) { 901aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 902329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 9033501a2bdSLois Curfman McInnes #else 9043501a2bdSLois Curfman McInnes sum += (*v)*(*v); v++; 9053501a2bdSLois Curfman McInnes #endif 9063501a2bdSLois Curfman McInnes } 9077adad957SLisandro Dalcin ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_SUM,((PetscObject)A)->comm);CHKERRQ(ierr); 908064f8208SBarry Smith *nrm = sqrt(*nrm); 909899cda47SBarry Smith ierr = PetscLogFlops(2*mdn->A->cmap.n*mdn->A->rmap.n);CHKERRQ(ierr); 9103a40ed3dSBarry Smith } else if (type == NORM_1) { 911329f5518SBarry Smith PetscReal *tmp,*tmp2; 912899cda47SBarry Smith ierr = PetscMalloc(2*A->cmap.N*sizeof(PetscReal),&tmp);CHKERRQ(ierr); 913899cda47SBarry Smith tmp2 = tmp + A->cmap.N; 914899cda47SBarry Smith ierr = PetscMemzero(tmp,2*A->cmap.N*sizeof(PetscReal));CHKERRQ(ierr); 915064f8208SBarry Smith *nrm = 0.0; 9163501a2bdSLois Curfman McInnes v = mat->v; 917899cda47SBarry Smith for (j=0; j<mdn->A->cmap.n; j++) { 918899cda47SBarry Smith for (i=0; i<mdn->A->rmap.n; i++) { 91967e560aaSBarry Smith tmp[j] += PetscAbsScalar(*v); v++; 9203501a2bdSLois Curfman McInnes } 9213501a2bdSLois Curfman McInnes } 9227adad957SLisandro Dalcin ierr = MPI_Allreduce(tmp,tmp2,A->cmap.N,MPIU_REAL,MPI_SUM,((PetscObject)A)->comm);CHKERRQ(ierr); 923899cda47SBarry Smith for (j=0; j<A->cmap.N; j++) { 924064f8208SBarry Smith if (tmp2[j] > *nrm) *nrm = tmp2[j]; 9253501a2bdSLois Curfman McInnes } 926606d414cSSatish Balay ierr = PetscFree(tmp);CHKERRQ(ierr); 927899cda47SBarry Smith ierr = PetscLogFlops(A->cmap.n*A->rmap.n);CHKERRQ(ierr); 9283a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 929329f5518SBarry Smith PetscReal ntemp; 9303501a2bdSLois Curfman McInnes ierr = MatNorm(mdn->A,type,&ntemp);CHKERRQ(ierr); 9317adad957SLisandro Dalcin ierr = MPI_Allreduce(&ntemp,nrm,1,MPIU_REAL,MPI_MAX,((PetscObject)A)->comm);CHKERRQ(ierr); 9323a40ed3dSBarry Smith } else { 93329bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for two norm"); 9343501a2bdSLois Curfman McInnes } 9353501a2bdSLois Curfman McInnes } 9363a40ed3dSBarry Smith PetscFunctionReturn(0); 9373501a2bdSLois Curfman McInnes } 9383501a2bdSLois Curfman McInnes 9394a2ae208SSatish Balay #undef __FUNCT__ 9404a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPIDense" 941fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIDense(Mat A,MatReuse reuse,Mat *matout) 9423501a2bdSLois Curfman McInnes { 9433501a2bdSLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 9443501a2bdSLois Curfman McInnes Mat_SeqDense *Aloc = (Mat_SeqDense*)a->A->data; 9453501a2bdSLois Curfman McInnes Mat B; 946899cda47SBarry Smith PetscInt M = A->rmap.N,N = A->cmap.N,m,n,*rwork,rstart = A->rmap.rstart; 9476849ba73SBarry Smith PetscErrorCode ierr; 94813f74950SBarry Smith PetscInt j,i; 94987828ca2SBarry Smith PetscScalar *v; 9503501a2bdSLois Curfman McInnes 9513a40ed3dSBarry Smith PetscFunctionBegin; 952fc4dec0aSBarry Smith if (A == *matout && M != N) { 95329bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Supports square matrix only in-place"); 9547056b6fcSBarry Smith } 955fc4dec0aSBarry Smith if (reuse == MAT_INITIAL_MATRIX || A == *matout) { 9567adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)A)->comm,&B);CHKERRQ(ierr); 957f69a0ea3SMatthew Knepley ierr = MatSetSizes(B,PETSC_DECIDE,PETSC_DECIDE,N,M);CHKERRQ(ierr); 9587adad957SLisandro Dalcin ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr); 959878740d9SKris Buschelman ierr = MatMPIDenseSetPreallocation(B,PETSC_NULL);CHKERRQ(ierr); 960fc4dec0aSBarry Smith } else { 961fc4dec0aSBarry Smith B = *matout; 962fc4dec0aSBarry Smith } 9633501a2bdSLois Curfman McInnes 964899cda47SBarry Smith m = a->A->rmap.n; n = a->A->cmap.n; v = Aloc->v; 9651acff37aSSatish Balay ierr = PetscMalloc(m*sizeof(PetscInt),&rwork);CHKERRQ(ierr); 9663501a2bdSLois Curfman McInnes for (i=0; i<m; i++) rwork[i] = rstart + i; 9671acff37aSSatish Balay for (j=0; j<n; j++) { 9683501a2bdSLois Curfman McInnes ierr = MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES);CHKERRQ(ierr); 9693501a2bdSLois Curfman McInnes v += m; 9703501a2bdSLois Curfman McInnes } 971606d414cSSatish Balay ierr = PetscFree(rwork);CHKERRQ(ierr); 9726d4a8577SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 9736d4a8577SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 974fc4dec0aSBarry Smith if (*matout != A) { 9753501a2bdSLois Curfman McInnes *matout = B; 9763501a2bdSLois Curfman McInnes } else { 977273d9f13SBarry Smith ierr = MatHeaderCopy(A,B);CHKERRQ(ierr); 9783501a2bdSLois Curfman McInnes } 9793a40ed3dSBarry Smith PetscFunctionReturn(0); 980096963f5SLois Curfman McInnes } 981096963f5SLois Curfman McInnes 982d9eff348SSatish Balay #include "petscblaslapack.h" 9834a2ae208SSatish Balay #undef __FUNCT__ 9844a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIDense" 985f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIDense(Mat inA,PetscScalar alpha) 98644cd7ae7SLois Curfman McInnes { 98744cd7ae7SLois Curfman McInnes Mat_MPIDense *A = (Mat_MPIDense*)inA->data; 98844cd7ae7SLois Curfman McInnes Mat_SeqDense *a = (Mat_SeqDense*)A->A->data; 989f4df32b1SMatthew Knepley PetscScalar oalpha = alpha; 990efee365bSSatish Balay PetscErrorCode ierr; 9910805154bSBarry Smith PetscBLASInt one = 1,nz = PetscBLASIntCast(inA->rmap.n*inA->cmap.N); 99244cd7ae7SLois Curfman McInnes 9933a40ed3dSBarry Smith PetscFunctionBegin; 994f4df32b1SMatthew Knepley BLASscal_(&nz,&oalpha,a->v,&one); 995efee365bSSatish Balay ierr = PetscLogFlops(nz);CHKERRQ(ierr); 9963a40ed3dSBarry Smith PetscFunctionReturn(0); 99744cd7ae7SLois Curfman McInnes } 99844cd7ae7SLois Curfman McInnes 9996849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat *); 10008965ea79SLois Curfman McInnes 10014a2ae208SSatish Balay #undef __FUNCT__ 10024a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPIDense" 1003dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPIDense(Mat A) 1004273d9f13SBarry Smith { 1005dfbe8321SBarry Smith PetscErrorCode ierr; 1006273d9f13SBarry Smith 1007273d9f13SBarry Smith PetscFunctionBegin; 1008273d9f13SBarry Smith ierr = MatMPIDenseSetPreallocation(A,0);CHKERRQ(ierr); 1009273d9f13SBarry Smith PetscFunctionReturn(0); 1010273d9f13SBarry Smith } 1011273d9f13SBarry Smith 10124ae313f4SHong Zhang #undef __FUNCT__ 10134ae313f4SHong Zhang #define __FUNCT__ "MatMatMultSymbolic_MPIDense_MPIDense" 10144ae313f4SHong Zhang PetscErrorCode MatMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat *C) 10154ae313f4SHong Zhang { 10164ae313f4SHong Zhang PetscErrorCode ierr; 10174ae313f4SHong Zhang PetscInt m=A->rmap.n,n=B->cmap.n; 10184ae313f4SHong Zhang Mat Cmat; 10194ae313f4SHong Zhang 10204ae313f4SHong Zhang PetscFunctionBegin; 10214ae313f4SHong Zhang if (A->cmap.n != B->rmap.n) SETERRQ2(PETSC_ERR_ARG_SIZ,"A->cmap.n %d != B->rmap.n %d\n",A->cmap.n,B->rmap.n); 10227adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)B)->comm,&Cmat);CHKERRQ(ierr); 10234ae313f4SHong Zhang ierr = MatSetSizes(Cmat,m,n,A->rmap.N,B->cmap.N);CHKERRQ(ierr); 10244ae313f4SHong Zhang ierr = MatSetType(Cmat,MATMPIDENSE);CHKERRQ(ierr); 10254ae313f4SHong Zhang ierr = MatMPIDenseSetPreallocation(Cmat,PETSC_NULL);CHKERRQ(ierr); 10262a6744ebSBarry Smith ierr = MatAssemblyBegin(Cmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 10270a71e23eSMatthew Knepley ierr = MatAssemblyEnd(Cmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 10284ae313f4SHong Zhang *C = Cmat; 10294ae313f4SHong Zhang PetscFunctionReturn(0); 10304ae313f4SHong Zhang } 10314ae313f4SHong Zhang 103201b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK) 103301b82886SBarry Smith #undef __FUNCT__ 103401b82886SBarry Smith #define __FUNCT__ "MatSolve_MPIDense" 103501b82886SBarry Smith PetscErrorCode MatSolve_MPIDense(Mat A,Vec b,Vec x) 103601b82886SBarry Smith { 1037*04fea9ffSBarry Smith MPI_Comm comm = ((PetscObject)A)->comm,dummy_comm; 103801b82886SBarry Smith Mat_Plapack *lu = (Mat_Plapack*)A->spptr; 103901b82886SBarry Smith PetscErrorCode ierr; 104001b82886SBarry Smith PetscInt M=A->rmap.N,m=A->rmap.n,rstart,i,j,*idx_pla,*idx_petsc,loc_m,loc_stride; 104101b82886SBarry Smith PetscScalar *array; 104201b82886SBarry Smith PetscReal one = 1.0; 104301b82886SBarry Smith PetscMPIInt size,rank,r_rank,r_nproc,c_rank,c_nproc;; 104401b82886SBarry Smith PLA_Obj v_pla = NULL; 104501b82886SBarry Smith PetscScalar *loc_buf; 104601b82886SBarry Smith Vec loc_x; 104701b82886SBarry Smith 104801b82886SBarry Smith PetscFunctionBegin; 104901b82886SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 105001b82886SBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 105101b82886SBarry Smith 105201b82886SBarry Smith /* Create PLAPACK vector objects, then copy b into PLAPACK b */ 105362b4c0b3SBarry Smith ierr = PLA_Mvector_create(lu->datatype,M,1,lu->templ,PLA_ALIGN_FIRST,&v_pla);CHKERRQ(ierr); 105462b4c0b3SBarry Smith ierr = PLA_Obj_set_to_zero(v_pla);CHKERRQ(ierr); 105501b82886SBarry Smith 105601b82886SBarry Smith /* Copy b into rhs_pla */ 105762b4c0b3SBarry Smith ierr = PLA_API_begin();CHKERRQ(ierr); 105862b4c0b3SBarry Smith ierr = PLA_Obj_API_open(v_pla);CHKERRQ(ierr); 105901b82886SBarry Smith ierr = VecGetArray(b,&array);CHKERRQ(ierr); 106062b4c0b3SBarry Smith ierr = PLA_API_axpy_vector_to_global(m,&one,(void *)array,1,v_pla,lu->rstart);CHKERRQ(ierr); 106101b82886SBarry Smith ierr = VecRestoreArray(b,&array);CHKERRQ(ierr); 106262b4c0b3SBarry Smith ierr = PLA_Obj_API_close(v_pla);CHKERRQ(ierr); 106362b4c0b3SBarry Smith ierr = PLA_API_end();CHKERRQ(ierr); 106401b82886SBarry Smith 106501b82886SBarry Smith if (A->factor == FACTOR_LU){ 106601b82886SBarry Smith /* Apply the permutations to the right hand sides */ 106762b4c0b3SBarry Smith ierr = PLA_Apply_pivots_to_rows (v_pla,lu->pivots);CHKERRQ(ierr); 106801b82886SBarry Smith 106901b82886SBarry Smith /* Solve L y = b, overwriting b with y */ 107062b4c0b3SBarry Smith ierr = PLA_Trsv( PLA_LOWER_TRIANGULAR,PLA_NO_TRANSPOSE,PLA_UNIT_DIAG,lu->A,v_pla );CHKERRQ(ierr); 107101b82886SBarry Smith 107201b82886SBarry Smith /* Solve U x = y (=b), overwriting b with x */ 107362b4c0b3SBarry Smith ierr = PLA_Trsv( PLA_UPPER_TRIANGULAR,PLA_NO_TRANSPOSE,PLA_NONUNIT_DIAG,lu->A,v_pla );CHKERRQ(ierr); 107401b82886SBarry Smith } else { /* FACTOR_CHOLESKY */ 107562b4c0b3SBarry Smith ierr = PLA_Trsv( PLA_LOWER_TRIANGULAR,PLA_NO_TRANSPOSE,PLA_NONUNIT_DIAG,lu->A,v_pla);CHKERRQ(ierr); 107662b4c0b3SBarry Smith ierr = PLA_Trsv( PLA_LOWER_TRIANGULAR,(lu->datatype == MPI_DOUBLE ? PLA_TRANSPOSE : PLA_CONJUGATE_TRANSPOSE),PLA_NONUNIT_DIAG,lu->A,v_pla);CHKERRQ(ierr); 107701b82886SBarry Smith } 107801b82886SBarry Smith 107901b82886SBarry Smith /* Copy PLAPACK x into Petsc vector x */ 108062b4c0b3SBarry Smith ierr = PLA_Obj_local_length(v_pla, &loc_m);CHKERRQ(ierr); 108162b4c0b3SBarry Smith ierr = PLA_Obj_local_buffer(v_pla, (void**)&loc_buf);CHKERRQ(ierr); 108262b4c0b3SBarry Smith ierr = PLA_Obj_local_stride(v_pla, &loc_stride);CHKERRQ(ierr); 108301b82886SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,loc_m*loc_stride,loc_buf,&loc_x);CHKERRQ(ierr); 108401b82886SBarry Smith if (!lu->pla_solved){ 108501b82886SBarry Smith 1086*04fea9ffSBarry Smith ierr = PLA_Temp_comm_row_info(lu->templ,&dummy_comm,&r_rank,&r_nproc);CHKERRQ(ierr); 1087*04fea9ffSBarry Smith ierr = PLA_Temp_comm_col_info(lu->templ,&dummy_comm,&c_rank,&c_nproc);CHKERRQ(ierr); 108801b82886SBarry Smith /* printf(" [%d] rank: %d %d, nproc: %d %d\n",rank,r_rank,c_rank,r_nproc,c_nproc); */ 108901b82886SBarry Smith 109001b82886SBarry Smith /* Create IS and cts for VecScatterring */ 109162b4c0b3SBarry Smith ierr = PLA_Obj_local_length(v_pla, &loc_m);CHKERRQ(ierr); 109262b4c0b3SBarry Smith ierr = PLA_Obj_local_stride(v_pla, &loc_stride);CHKERRQ(ierr); 109301b82886SBarry Smith ierr = PetscMalloc((2*loc_m+1)*sizeof(PetscInt),&idx_pla);CHKERRQ(ierr); 109401b82886SBarry Smith idx_petsc = idx_pla + loc_m; 109501b82886SBarry Smith 109601b82886SBarry Smith rstart = (r_rank*c_nproc+c_rank)*lu->nb; 109701b82886SBarry Smith for (i=0; i<loc_m; i+=lu->nb){ 109801b82886SBarry Smith j = 0; 109901b82886SBarry Smith while (j < lu->nb && i+j < loc_m){ 110001b82886SBarry Smith idx_petsc[i+j] = rstart + j; j++; 110101b82886SBarry Smith } 110201b82886SBarry Smith rstart += size*lu->nb; 110301b82886SBarry Smith } 110401b82886SBarry Smith 110501b82886SBarry Smith for (i=0; i<loc_m; i++) idx_pla[i] = i*loc_stride; 110601b82886SBarry Smith 110701b82886SBarry Smith ierr = ISCreateGeneral(PETSC_COMM_SELF,loc_m,idx_pla,&lu->is_pla);CHKERRQ(ierr); 110801b82886SBarry Smith ierr = ISCreateGeneral(PETSC_COMM_SELF,loc_m,idx_petsc,&lu->is_petsc);CHKERRQ(ierr); 110901b82886SBarry Smith ierr = PetscFree(idx_pla);CHKERRQ(ierr); 111001b82886SBarry Smith ierr = VecScatterCreate(loc_x,lu->is_pla,x,lu->is_petsc,&lu->ctx);CHKERRQ(ierr); 111101b82886SBarry Smith } 111201b82886SBarry Smith ierr = VecScatterBegin(lu->ctx,loc_x,x,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 111301b82886SBarry Smith ierr = VecScatterEnd(lu->ctx,loc_x,x,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 111401b82886SBarry Smith 111501b82886SBarry Smith /* Free data */ 111601b82886SBarry Smith ierr = VecDestroy(loc_x);CHKERRQ(ierr); 111762b4c0b3SBarry Smith ierr = PLA_Obj_free(&v_pla);CHKERRQ(ierr); 111801b82886SBarry Smith 111901b82886SBarry Smith lu->pla_solved = PETSC_TRUE; 112001b82886SBarry Smith PetscFunctionReturn(0); 112101b82886SBarry Smith } 112201b82886SBarry Smith 112301b82886SBarry Smith #undef __FUNCT__ 112401b82886SBarry Smith #define __FUNCT__ "MatLUFactorNumeric_MPIDense" 112501b82886SBarry Smith PetscErrorCode MatLUFactorNumeric_MPIDense(Mat A,MatFactorInfo *info,Mat *F) 112601b82886SBarry Smith { 112701b82886SBarry Smith Mat_Plapack *lu = (Mat_Plapack*)(*F)->spptr; 112801b82886SBarry Smith PetscErrorCode ierr; 112901b82886SBarry Smith PetscInt M=A->rmap.N,m=A->rmap.n,rstart,rend; 113001b82886SBarry Smith PetscInt info_pla=0; 113101b82886SBarry Smith PetscScalar *array,one = 1.0; 113201b82886SBarry Smith 113301b82886SBarry Smith PetscFunctionBegin; 113462b4c0b3SBarry Smith ierr = PLA_Obj_set_to_zero(lu->A);CHKERRQ(ierr); 113501b82886SBarry Smith 113601b82886SBarry Smith /* Copy A into lu->A */ 113762b4c0b3SBarry Smith ierr = PLA_API_begin();CHKERRQ(ierr); 113862b4c0b3SBarry Smith ierr = PLA_Obj_API_open(lu->A);CHKERRQ(ierr); 113901b82886SBarry Smith ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr); 114001b82886SBarry Smith ierr = MatGetArray(A,&array);CHKERRQ(ierr); 114162b4c0b3SBarry Smith ierr = PLA_API_axpy_matrix_to_global(m,M, &one,(void *)array,m,lu->A,rstart,0);CHKERRQ(ierr); 114201b82886SBarry Smith ierr = MatRestoreArray(A,&array);CHKERRQ(ierr); 114362b4c0b3SBarry Smith ierr = PLA_Obj_API_close(lu->A);CHKERRQ(ierr); 114462b4c0b3SBarry Smith ierr = PLA_API_end();CHKERRQ(ierr); 114501b82886SBarry Smith 114601b82886SBarry Smith /* Factor P A -> L U overwriting lower triangular portion of A with L, upper, U */ 114701b82886SBarry Smith info_pla = PLA_LU(lu->A,lu->pivots); 114801b82886SBarry Smith if (info_pla != 0) 114901b82886SBarry Smith SETERRQ1(PETSC_ERR_MAT_LU_ZRPVT,"Zero pivot encountered at row %d from PLA_LU()",info_pla); 115001b82886SBarry Smith 115101b82886SBarry Smith lu->CleanUpPlapack = PETSC_TRUE; 115201b82886SBarry Smith lu->rstart = rstart; 115301b82886SBarry Smith 115401b82886SBarry Smith (*F)->assembled = PETSC_TRUE; /* required by -ksp_view */ 115501b82886SBarry Smith PetscFunctionReturn(0); 115601b82886SBarry Smith } 115701b82886SBarry Smith 115801b82886SBarry Smith #undef __FUNCT__ 115901b82886SBarry Smith #define __FUNCT__ "MatCholeskyFactorNumeric_MPIDense" 116001b82886SBarry Smith PetscErrorCode MatCholeskyFactorNumeric_MPIDense(Mat A,MatFactorInfo *info,Mat *F) 116101b82886SBarry Smith { 116201b82886SBarry Smith Mat_Plapack *lu = (Mat_Plapack*)(*F)->spptr; 116301b82886SBarry Smith PetscErrorCode ierr; 116401b82886SBarry Smith PetscInt M=A->rmap.N,m=A->rmap.n,rstart,rend; 116501b82886SBarry Smith PetscInt info_pla=0; 116601b82886SBarry Smith PetscScalar *array,one = 1.0; 116701b82886SBarry Smith 116801b82886SBarry Smith PetscFunctionBegin; 1169e0fbc2eeSBarry Smith 117001b82886SBarry Smith /* Copy A into lu->A */ 117162b4c0b3SBarry Smith ierr = PLA_Obj_set_to_zero(lu->A);CHKERRQ(ierr); 117262b4c0b3SBarry Smith ierr = PLA_API_begin();CHKERRQ(ierr); 117362b4c0b3SBarry Smith ierr = PLA_Obj_API_open(lu->A);CHKERRQ(ierr); 117401b82886SBarry Smith ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr); 117501b82886SBarry Smith ierr = MatGetArray(A,&array);CHKERRQ(ierr); 117662b4c0b3SBarry Smith ierr = PLA_API_axpy_matrix_to_global(m,M, &one,(void *)array,m,lu->A,rstart,0);CHKERRQ(ierr); 117701b82886SBarry Smith ierr = MatRestoreArray(A,&array);CHKERRQ(ierr); 117862b4c0b3SBarry Smith ierr = PLA_Obj_API_close(lu->A);CHKERRQ(ierr); 117962b4c0b3SBarry Smith ierr = PLA_API_end();CHKERRQ(ierr); 118001b82886SBarry Smith 118101b82886SBarry Smith /* Factor P A -> Chol */ 118201b82886SBarry Smith info_pla = PLA_Chol(PLA_LOWER_TRIANGULAR,lu->A); 118301b82886SBarry Smith if (info_pla != 0) 118401b82886SBarry Smith SETERRQ1( PETSC_ERR_MAT_CH_ZRPVT,"Nonpositive definite matrix detected at row %d from PLA_Chol()",info_pla); 118501b82886SBarry Smith 118601b82886SBarry Smith lu->CleanUpPlapack = PETSC_TRUE; 118701b82886SBarry Smith lu->rstart = rstart; 118801b82886SBarry Smith 118901b82886SBarry Smith (*F)->assembled = PETSC_TRUE; /* required by -ksp_view */ 119001b82886SBarry Smith PetscFunctionReturn(0); 119101b82886SBarry Smith } 119201b82886SBarry Smith 119301b82886SBarry Smith #undef __FUNCT__ 119401b82886SBarry Smith #define __FUNCT__ "MatFactorSymbolic_MPIDense_Private" 119501b82886SBarry Smith PetscErrorCode MatFactorSymbolic_MPIDense_Private(Mat A,MatFactorInfo *info,Mat *F) 119601b82886SBarry Smith { 119701b82886SBarry Smith Mat B; 119801b82886SBarry Smith Mat_Plapack *lu; 119901b82886SBarry Smith PetscErrorCode ierr; 120001b82886SBarry Smith PetscInt M=A->rmap.N,N=A->cmap.N; 1201*04fea9ffSBarry Smith MPI_Comm comm=((PetscObject)A)->comm; 120201b82886SBarry Smith PetscMPIInt size; 120301b82886SBarry Smith PetscInt ierror; 120401b82886SBarry Smith 120501b82886SBarry Smith PetscFunctionBegin; 120601b82886SBarry Smith /* Create the factorization matrix */ 120701b82886SBarry Smith ierr = MatCreate(((PetscObject)A)->comm,&B);CHKERRQ(ierr); 120801b82886SBarry Smith ierr = MatSetSizes(B,A->rmap.n,A->cmap.n,M,N);CHKERRQ(ierr); 120901b82886SBarry Smith ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr); 121001b82886SBarry Smith 121101b82886SBarry Smith lu = (Mat_Plapack*)(B->spptr); 121201b82886SBarry Smith 121301b82886SBarry Smith /* Set default Plapack parameters */ 121401b82886SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 121501b82886SBarry Smith ierror = 0; 121601b82886SBarry Smith lu->nb = M/size; 121701b82886SBarry Smith if (M - lu->nb*size) lu->nb++; /* without cyclic distribution */ 121801b82886SBarry Smith 121901b82886SBarry Smith /* Set runtime options */ 122001b82886SBarry Smith ierr = PetscOptionsBegin(((PetscObject)A)->comm,((PetscObject)A)->prefix,"PLAPACK Options","Mat");CHKERRQ(ierr); 1221*04fea9ffSBarry Smith ierr = PetscOptionsInt("-mat_plapack_nprows","row dimension of 2D processor mesh","None",Plapack_nprows,&Plapack_nprows,PETSC_NULL);CHKERRQ(ierr); 1222*04fea9ffSBarry Smith ierr = PetscOptionsInt("-mat_plapack_npcols","column dimension of 2D processor mesh","None",Plapack_npcols,&Plapack_npcols,PETSC_NULL);CHKERRQ(ierr); 122301b82886SBarry Smith 122401b82886SBarry Smith ierr = PetscOptionsInt("-mat_plapack_nb","block size of template vector","None",lu->nb,&lu->nb,PETSC_NULL);CHKERRQ(ierr); 122501b82886SBarry Smith ierr = PetscOptionsInt("-mat_plapack_ckerror","error checking flag","None",ierror,&ierror,PETSC_NULL);CHKERRQ(ierr); 122601b82886SBarry Smith if (ierror){ 122762b4c0b3SBarry Smith ierr = PLA_Set_error_checking(ierror,PETSC_TRUE,PETSC_TRUE,PETSC_FALSE );CHKERRQ(ierr); 122801b82886SBarry Smith } else { 122962b4c0b3SBarry Smith ierr = PLA_Set_error_checking(ierror,PETSC_FALSE,PETSC_FALSE,PETSC_FALSE );CHKERRQ(ierr); 123001b82886SBarry Smith } 123101b82886SBarry Smith lu->ierror = ierror; 123201b82886SBarry Smith 123301b82886SBarry Smith lu->nb_alg = 0; 123401b82886SBarry Smith ierr = PetscOptionsInt("-mat_plapack_nb_alg","algorithmic block size","None",lu->nb_alg,&lu->nb_alg,PETSC_NULL);CHKERRQ(ierr); 123501b82886SBarry Smith if (lu->nb_alg){ 123662b4c0b3SBarry Smith ierr = pla_Environ_set_nb_alg (PLA_OP_ALL_ALG,lu->nb_alg);CHKERRQ(ierr); 123701b82886SBarry Smith } 123801b82886SBarry Smith PetscOptionsEnd(); 123901b82886SBarry Smith 124001b82886SBarry Smith 124101b82886SBarry Smith /* Create object distribution template */ 124201b82886SBarry Smith lu->templ = NULL; 124362b4c0b3SBarry Smith ierr = PLA_Temp_create(lu->nb, 0, &lu->templ);CHKERRQ(ierr); 124401b82886SBarry Smith 124501b82886SBarry Smith /* Use suggested nb_alg if it is not provided by user */ 124601b82886SBarry Smith if (lu->nb_alg == 0){ 124762b4c0b3SBarry Smith ierr = PLA_Environ_nb_alg(PLA_OP_PAN_PAN,lu->templ,&lu->nb_alg);CHKERRQ(ierr); 124862b4c0b3SBarry Smith ierr = pla_Environ_set_nb_alg(PLA_OP_ALL_ALG,lu->nb_alg);CHKERRQ(ierr); 124901b82886SBarry Smith } 125001b82886SBarry Smith 125101b82886SBarry Smith /* Set the datatype */ 125201b82886SBarry Smith #if defined(PETSC_USE_COMPLEX) 125301b82886SBarry Smith lu->datatype = MPI_DOUBLE_COMPLEX; 125401b82886SBarry Smith #else 125501b82886SBarry Smith lu->datatype = MPI_DOUBLE; 125601b82886SBarry Smith #endif 125701b82886SBarry Smith 1258e1156936SBarry Smith ierr = PLA_Matrix_create(lu->datatype,M,M,lu->templ,PLA_ALIGN_FIRST,PLA_ALIGN_FIRST,&lu->A);CHKERRQ(ierr); 1259e1156936SBarry Smith 126001b82886SBarry Smith lu->pla_solved = PETSC_FALSE; /* MatSolve_Plapack() is called yet */ 126101b82886SBarry Smith lu->CleanUpPlapack = PETSC_TRUE; 126201b82886SBarry Smith *F = B; 126301b82886SBarry Smith PetscFunctionReturn(0); 126401b82886SBarry Smith } 126501b82886SBarry Smith 126601b82886SBarry Smith /* Note the Petsc r and c permutations are ignored */ 126701b82886SBarry Smith #undef __FUNCT__ 126801b82886SBarry Smith #define __FUNCT__ "MatLUFactorSymbolic_MPIDense" 126901b82886SBarry Smith PetscErrorCode MatLUFactorSymbolic_MPIDense(Mat A,IS r,IS c,MatFactorInfo *info,Mat *F) 127001b82886SBarry Smith { 127101b82886SBarry Smith PetscErrorCode ierr; 1272e1156936SBarry Smith PetscInt M = A->rmap.N; 1273e1156936SBarry Smith Mat_Plapack *lu; 127401b82886SBarry Smith 127501b82886SBarry Smith PetscFunctionBegin; 127601b82886SBarry Smith ierr = MatFactorSymbolic_MPIDense_Private(A,info,F);CHKERRQ(ierr); 1277e1156936SBarry Smith lu = (Mat_Plapack*)(*F)->spptr; 1278e1156936SBarry Smith ierr = PLA_Mvector_create(MPI_INT,M,1,lu->templ,PLA_ALIGN_FIRST,&lu->pivots);CHKERRQ(ierr); 127901b82886SBarry Smith (*F)->factor = FACTOR_LU; 128001b82886SBarry Smith PetscFunctionReturn(0); 128101b82886SBarry Smith } 128201b82886SBarry Smith 128301b82886SBarry Smith /* Note the Petsc perm permutation is ignored */ 128401b82886SBarry Smith #undef __FUNCT__ 128501b82886SBarry Smith #define __FUNCT__ "MatCholeskyFactorSymbolic_MPIDense" 128601b82886SBarry Smith PetscErrorCode MatCholeskyFactorSymbolic_MPIDense(Mat A,IS perm,MatFactorInfo *info,Mat *F) 128701b82886SBarry Smith { 128801b82886SBarry Smith PetscErrorCode ierr; 128901b82886SBarry Smith PetscTruth issymmetric,set; 129001b82886SBarry Smith 129101b82886SBarry Smith PetscFunctionBegin; 129201b82886SBarry Smith ierr = MatIsSymmetricKnown(A,&set,&issymmetric); CHKERRQ(ierr); 129301b82886SBarry Smith if (!set || !issymmetric) SETERRQ(PETSC_ERR_USER,"Matrix must be set as MAT_SYMMETRIC for CholeskyFactor()"); 129401b82886SBarry Smith ierr = MatFactorSymbolic_MPIDense_Private(A,info,F);CHKERRQ(ierr); 129501b82886SBarry Smith (*F)->factor = FACTOR_CHOLESKY; 129601b82886SBarry Smith PetscFunctionReturn(0); 129701b82886SBarry Smith } 129801b82886SBarry Smith #endif 129901b82886SBarry Smith 13008965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/ 130109dc0095SBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIDense, 130209dc0095SBarry Smith MatGetRow_MPIDense, 130309dc0095SBarry Smith MatRestoreRow_MPIDense, 130409dc0095SBarry Smith MatMult_MPIDense, 130597304618SKris Buschelman /* 4*/ MatMultAdd_MPIDense, 13067c922b88SBarry Smith MatMultTranspose_MPIDense, 13077c922b88SBarry Smith MatMultTransposeAdd_MPIDense, 130801b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK) 130901b82886SBarry Smith MatSolve_MPIDense, 131001b82886SBarry Smith #else 13118965ea79SLois Curfman McInnes 0, 131201b82886SBarry Smith #endif 131309dc0095SBarry Smith 0, 131409dc0095SBarry Smith 0, 131597304618SKris Buschelman /*10*/ 0, 131609dc0095SBarry Smith 0, 131709dc0095SBarry Smith 0, 131809dc0095SBarry Smith 0, 131909dc0095SBarry Smith MatTranspose_MPIDense, 132097304618SKris Buschelman /*15*/ MatGetInfo_MPIDense, 13216e4ee0c6SHong Zhang MatEqual_MPIDense, 132209dc0095SBarry Smith MatGetDiagonal_MPIDense, 13235b2fa520SLois Curfman McInnes MatDiagonalScale_MPIDense, 132409dc0095SBarry Smith MatNorm_MPIDense, 132597304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIDense, 132609dc0095SBarry Smith MatAssemblyEnd_MPIDense, 132709dc0095SBarry Smith 0, 132809dc0095SBarry Smith MatSetOption_MPIDense, 132909dc0095SBarry Smith MatZeroEntries_MPIDense, 133097304618SKris Buschelman /*25*/ MatZeroRows_MPIDense, 133101b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK) 13320ad19415SHong Zhang MatLUFactorSymbolic_MPIDense, 133301b82886SBarry Smith MatLUFactorNumeric_MPIDense, 13340ad19415SHong Zhang MatCholeskyFactorSymbolic_MPIDense, 133501b82886SBarry Smith MatCholeskyFactorNumeric_MPIDense, 133601b82886SBarry Smith #else 1337919b68f7SBarry Smith 0, 133801b82886SBarry Smith 0, 133901b82886SBarry Smith 0, 134001b82886SBarry Smith 0, 134101b82886SBarry Smith #endif 134297304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPIDense, 1343273d9f13SBarry Smith 0, 134409dc0095SBarry Smith 0, 134509dc0095SBarry Smith MatGetArray_MPIDense, 134609dc0095SBarry Smith MatRestoreArray_MPIDense, 134797304618SKris Buschelman /*35*/ MatDuplicate_MPIDense, 134809dc0095SBarry Smith 0, 134909dc0095SBarry Smith 0, 135009dc0095SBarry Smith 0, 135109dc0095SBarry Smith 0, 135297304618SKris Buschelman /*40*/ 0, 13532ce60cd0SSatish Balay MatGetSubMatrices_MPIDense, 135409dc0095SBarry Smith 0, 135509dc0095SBarry Smith MatGetValues_MPIDense, 135609dc0095SBarry Smith 0, 135797304618SKris Buschelman /*45*/ 0, 135809dc0095SBarry Smith MatScale_MPIDense, 135909dc0095SBarry Smith 0, 136009dc0095SBarry Smith 0, 136109dc0095SBarry Smith 0, 1362521d7252SBarry Smith /*50*/ 0, 136309dc0095SBarry Smith 0, 136409dc0095SBarry Smith 0, 136509dc0095SBarry Smith 0, 136609dc0095SBarry Smith 0, 136797304618SKris Buschelman /*55*/ 0, 136809dc0095SBarry Smith 0, 136909dc0095SBarry Smith 0, 137009dc0095SBarry Smith 0, 137109dc0095SBarry Smith 0, 137297304618SKris Buschelman /*60*/ MatGetSubMatrix_MPIDense, 1373b9b97703SBarry Smith MatDestroy_MPIDense, 1374b9b97703SBarry Smith MatView_MPIDense, 1375357abbc8SBarry Smith 0, 137697304618SKris Buschelman 0, 137797304618SKris Buschelman /*65*/ 0, 137897304618SKris Buschelman 0, 137997304618SKris Buschelman 0, 138097304618SKris Buschelman 0, 138197304618SKris Buschelman 0, 138297304618SKris Buschelman /*70*/ 0, 138397304618SKris Buschelman 0, 138497304618SKris Buschelman 0, 138597304618SKris Buschelman 0, 138697304618SKris Buschelman 0, 138797304618SKris Buschelman /*75*/ 0, 138897304618SKris Buschelman 0, 138997304618SKris Buschelman 0, 139097304618SKris Buschelman 0, 139197304618SKris Buschelman 0, 139297304618SKris Buschelman /*80*/ 0, 139397304618SKris Buschelman 0, 139497304618SKris Buschelman 0, 139597304618SKris Buschelman 0, 1396865e5f61SKris Buschelman /*84*/ MatLoad_MPIDense, 1397865e5f61SKris Buschelman 0, 1398865e5f61SKris Buschelman 0, 1399865e5f61SKris Buschelman 0, 1400865e5f61SKris Buschelman 0, 1401865e5f61SKris Buschelman 0, 1402865e5f61SKris Buschelman /*90*/ 0, 14034ae313f4SHong Zhang MatMatMultSymbolic_MPIDense_MPIDense, 1404865e5f61SKris Buschelman 0, 1405865e5f61SKris Buschelman 0, 1406865e5f61SKris Buschelman 0, 1407865e5f61SKris Buschelman /*95*/ 0, 1408865e5f61SKris Buschelman 0, 1409865e5f61SKris Buschelman 0, 1410865e5f61SKris Buschelman 0}; 14118965ea79SLois Curfman McInnes 1412273d9f13SBarry Smith EXTERN_C_BEGIN 14134a2ae208SSatish Balay #undef __FUNCT__ 1414a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIDenseSetPreallocation_MPIDense" 1415be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIDenseSetPreallocation_MPIDense(Mat mat,PetscScalar *data) 1416a23d5eceSKris Buschelman { 1417a23d5eceSKris Buschelman Mat_MPIDense *a; 1418dfbe8321SBarry Smith PetscErrorCode ierr; 1419a23d5eceSKris Buschelman 1420a23d5eceSKris Buschelman PetscFunctionBegin; 1421a23d5eceSKris Buschelman mat->preallocated = PETSC_TRUE; 1422a23d5eceSKris Buschelman /* Note: For now, when data is specified above, this assumes the user correctly 1423a23d5eceSKris Buschelman allocates the local dense storage space. We should add error checking. */ 1424a23d5eceSKris Buschelman 1425a23d5eceSKris Buschelman a = (Mat_MPIDense*)mat->data; 1426f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&a->A);CHKERRQ(ierr); 1427899cda47SBarry Smith ierr = MatSetSizes(a->A,mat->rmap.n,mat->cmap.N,mat->rmap.n,mat->cmap.N);CHKERRQ(ierr); 14285c5985e7SKris Buschelman ierr = MatSetType(a->A,MATSEQDENSE);CHKERRQ(ierr); 14295c5985e7SKris Buschelman ierr = MatSeqDenseSetPreallocation(a->A,data);CHKERRQ(ierr); 143052e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 1431a23d5eceSKris Buschelman PetscFunctionReturn(0); 1432a23d5eceSKris Buschelman } 1433a23d5eceSKris Buschelman EXTERN_C_END 1434a23d5eceSKris Buschelman 14357878bbefSBarry Smith EXTERN_C_BEGIN 14367878bbefSBarry Smith #if defined(PETSC_HAVE_PLAPACK) 14377878bbefSBarry Smith #undef __FUNCT__ 14387878bbefSBarry Smith #define __FUNCT__ "MatSetSolverType_MPIDense_PLAPACK" 14397878bbefSBarry Smith PetscErrorCode PETSCMAT_DLLEXPORT MatSetSolverType_MPIDense_PLAPACK(Mat mat,const char *type) 14407878bbefSBarry Smith { 14417878bbefSBarry Smith PetscFunctionBegin; 14427878bbefSBarry Smith /* dummy function so that -mat_solver_type plapack or MatSetSolverType(mat,"plapack"); silently work (since PLAPACK is on by default) */ 14437878bbefSBarry Smith PetscFunctionReturn(0); 14447878bbefSBarry Smith } 14457878bbefSBarry Smith #endif 14467a667e6fSSatish Balay EXTERN_C_END 14477878bbefSBarry Smith 14480bad9183SKris Buschelman /*MC 1449fafad747SKris Buschelman MATMPIDENSE - MATMPIDENSE = "mpidense" - A matrix type to be used for distributed dense matrices. 14500bad9183SKris Buschelman 14510bad9183SKris Buschelman Options Database Keys: 14520bad9183SKris Buschelman . -mat_type mpidense - sets the matrix type to "mpidense" during a call to MatSetFromOptions() 14530bad9183SKris Buschelman 14540bad9183SKris Buschelman Level: beginner 14550bad9183SKris Buschelman 14567878bbefSBarry Smith MATMPIDENSE matrices may use direct solvers (LU, Cholesky, and QR) 14577878bbefSBarry Smith for parallel dense matrices via the external package PLAPACK, if PLAPACK is installed 14587878bbefSBarry Smith (run config/configure.py with the option --download-plapack) 14597878bbefSBarry Smith 14607878bbefSBarry Smith 14617878bbefSBarry Smith Options Database Keys: 14627878bbefSBarry Smith . -mat_plapack_nprows <n> - number of rows in processor partition 14637878bbefSBarry Smith . -mat_plapack_npcols <n> - number of columns in processor partition 14647878bbefSBarry Smith . -mat_plapack_nb <n> - block size of template vector 14657878bbefSBarry Smith . -mat_plapack_nb_alg <n> - algorithmic block size 14667878bbefSBarry Smith - -mat_plapack_ckerror <n> - error checking flag 14677878bbefSBarry Smith 14687878bbefSBarry Smith .seealso: MatCreateMPIDense(), MATDENSE, MATSEQDENSE 14690bad9183SKris Buschelman M*/ 14700bad9183SKris Buschelman 1471a23d5eceSKris Buschelman EXTERN_C_BEGIN 1472a23d5eceSKris Buschelman #undef __FUNCT__ 14734a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIDense" 1474be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPIDense(Mat mat) 1475273d9f13SBarry Smith { 1476273d9f13SBarry Smith Mat_MPIDense *a; 1477dfbe8321SBarry Smith PetscErrorCode ierr; 147801b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK) 147901b82886SBarry Smith Mat_Plapack *lu; 148001b82886SBarry Smith #endif 1481273d9f13SBarry Smith 1482273d9f13SBarry Smith PetscFunctionBegin; 148338f2d2fdSLisandro Dalcin ierr = PetscNewLog(mat,Mat_MPIDense,&a);CHKERRQ(ierr); 1484b0a32e0cSBarry Smith mat->data = (void*)a; 1485273d9f13SBarry Smith ierr = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1486273d9f13SBarry Smith mat->factor = 0; 1487273d9f13SBarry Smith mat->mapping = 0; 1488273d9f13SBarry Smith 1489273d9f13SBarry Smith mat->insertmode = NOT_SET_VALUES; 14907adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&a->rank);CHKERRQ(ierr); 14917adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)mat)->comm,&a->size);CHKERRQ(ierr); 1492273d9f13SBarry Smith 1493899cda47SBarry Smith mat->rmap.bs = mat->cmap.bs = 1; 14946148ca0dSBarry Smith ierr = PetscMapSetUp(&mat->rmap);CHKERRQ(ierr); 14956148ca0dSBarry Smith ierr = PetscMapSetUp(&mat->cmap);CHKERRQ(ierr); 1496899cda47SBarry Smith a->nvec = mat->cmap.n; 1497273d9f13SBarry Smith 1498273d9f13SBarry Smith /* build cache for off array entries formed */ 1499273d9f13SBarry Smith a->donotstash = PETSC_FALSE; 15007adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)mat)->comm,1,&mat->stash);CHKERRQ(ierr); 1501273d9f13SBarry Smith 1502273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 1503273d9f13SBarry Smith a->lvec = 0; 1504273d9f13SBarry Smith a->Mvctx = 0; 1505273d9f13SBarry Smith a->roworiented = PETSC_TRUE; 1506273d9f13SBarry Smith 1507273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatGetDiagonalBlock_C", 1508273d9f13SBarry Smith "MatGetDiagonalBlock_MPIDense", 1509273d9f13SBarry Smith MatGetDiagonalBlock_MPIDense);CHKERRQ(ierr); 1510a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMPIDenseSetPreallocation_C", 1511a23d5eceSKris Buschelman "MatMPIDenseSetPreallocation_MPIDense", 1512a23d5eceSKris Buschelman MatMPIDenseSetPreallocation_MPIDense);CHKERRQ(ierr); 15134ae313f4SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMatMult_mpiaij_mpidense_C", 15144ae313f4SHong Zhang "MatMatMult_MPIAIJ_MPIDense", 15154ae313f4SHong Zhang MatMatMult_MPIAIJ_MPIDense);CHKERRQ(ierr); 15164ae313f4SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C", 15174ae313f4SHong Zhang "MatMatMultSymbolic_MPIAIJ_MPIDense", 15184ae313f4SHong Zhang MatMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr); 15194ae313f4SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C", 15204ae313f4SHong Zhang "MatMatMultNumeric_MPIAIJ_MPIDense", 15214ae313f4SHong Zhang MatMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr); 15227878bbefSBarry Smith #if defined(PETSC_HAVE_PLAPACK) 15237878bbefSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatSetSolverType_mpidense_plapack_C", 15247878bbefSBarry Smith "MatSetSolverType_MPIDense_PLAPACK", 15257878bbefSBarry Smith MatSetSolverType_MPIDense_PLAPACK);CHKERRQ(ierr); 15267878bbefSBarry Smith #endif 152738aed534SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)mat,MATMPIDENSE);CHKERRQ(ierr); 152801b82886SBarry Smith 152901b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK) 153001b82886SBarry Smith ierr = PetscNewLog(mat,Mat_Plapack,&lu);CHKERRQ(ierr); 153101b82886SBarry Smith lu->CleanUpPlapack = PETSC_FALSE; 153201b82886SBarry Smith mat->spptr = (void*)lu; 153301b82886SBarry Smith #endif 1534273d9f13SBarry Smith PetscFunctionReturn(0); 1535273d9f13SBarry Smith } 1536273d9f13SBarry Smith EXTERN_C_END 1537273d9f13SBarry Smith 1538209238afSKris Buschelman /*MC 1539002d173eSKris Buschelman MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices. 1540209238afSKris Buschelman 1541209238afSKris Buschelman This matrix type is identical to MATSEQDENSE when constructed with a single process communicator, 1542209238afSKris Buschelman and MATMPIDENSE otherwise. 1543209238afSKris Buschelman 1544209238afSKris Buschelman Options Database Keys: 1545209238afSKris Buschelman . -mat_type dense - sets the matrix type to "dense" during a call to MatSetFromOptions() 1546209238afSKris Buschelman 1547209238afSKris Buschelman Level: beginner 1548209238afSKris Buschelman 154901b82886SBarry Smith 1550209238afSKris Buschelman .seealso: MatCreateMPIDense,MATSEQDENSE,MATMPIDENSE 1551209238afSKris Buschelman M*/ 1552209238afSKris Buschelman 1553209238afSKris Buschelman EXTERN_C_BEGIN 1554209238afSKris Buschelman #undef __FUNCT__ 1555209238afSKris Buschelman #define __FUNCT__ "MatCreate_Dense" 1556be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_Dense(Mat A) 1557dfbe8321SBarry Smith { 15586849ba73SBarry Smith PetscErrorCode ierr; 155913f74950SBarry Smith PetscMPIInt size; 1560209238afSKris Buschelman 1561209238afSKris Buschelman PetscFunctionBegin; 15627adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 1563209238afSKris Buschelman if (size == 1) { 1564209238afSKris Buschelman ierr = MatSetType(A,MATSEQDENSE);CHKERRQ(ierr); 1565209238afSKris Buschelman } else { 1566209238afSKris Buschelman ierr = MatSetType(A,MATMPIDENSE);CHKERRQ(ierr); 1567209238afSKris Buschelman } 1568209238afSKris Buschelman PetscFunctionReturn(0); 1569209238afSKris Buschelman } 1570209238afSKris Buschelman EXTERN_C_END 1571209238afSKris Buschelman 15724a2ae208SSatish Balay #undef __FUNCT__ 15734a2ae208SSatish Balay #define __FUNCT__ "MatMPIDenseSetPreallocation" 1574273d9f13SBarry Smith /*@C 1575273d9f13SBarry Smith MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries 1576273d9f13SBarry Smith 1577273d9f13SBarry Smith Not collective 1578273d9f13SBarry Smith 1579273d9f13SBarry Smith Input Parameters: 1580273d9f13SBarry Smith . A - the matrix 1581273d9f13SBarry Smith - data - optional location of matrix data. Set data=PETSC_NULL for PETSc 1582273d9f13SBarry Smith to control all matrix memory allocation. 1583273d9f13SBarry Smith 1584273d9f13SBarry Smith Notes: 1585273d9f13SBarry Smith The dense format is fully compatible with standard Fortran 77 1586273d9f13SBarry Smith storage by columns. 1587273d9f13SBarry Smith 1588273d9f13SBarry Smith The data input variable is intended primarily for Fortran programmers 1589273d9f13SBarry Smith who wish to allocate their own matrix memory space. Most users should 1590273d9f13SBarry Smith set data=PETSC_NULL. 1591273d9f13SBarry Smith 1592273d9f13SBarry Smith Level: intermediate 1593273d9f13SBarry Smith 1594273d9f13SBarry Smith .keywords: matrix,dense, parallel 1595273d9f13SBarry Smith 1596273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 1597273d9f13SBarry Smith @*/ 1598be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIDenseSetPreallocation(Mat mat,PetscScalar *data) 1599273d9f13SBarry Smith { 1600dfbe8321SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscScalar *); 1601273d9f13SBarry Smith 1602273d9f13SBarry Smith PetscFunctionBegin; 1603565567f0SKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 1604a23d5eceSKris Buschelman if (f) { 1605a23d5eceSKris Buschelman ierr = (*f)(mat,data);CHKERRQ(ierr); 1606a23d5eceSKris Buschelman } 1607273d9f13SBarry Smith PetscFunctionReturn(0); 1608273d9f13SBarry Smith } 1609273d9f13SBarry Smith 16104a2ae208SSatish Balay #undef __FUNCT__ 16114a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPIDense" 16128965ea79SLois Curfman McInnes /*@C 161339ddd567SLois Curfman McInnes MatCreateMPIDense - Creates a sparse parallel matrix in dense format. 16148965ea79SLois Curfman McInnes 1615db81eaa0SLois Curfman McInnes Collective on MPI_Comm 1616db81eaa0SLois Curfman McInnes 16178965ea79SLois Curfman McInnes Input Parameters: 1618db81eaa0SLois Curfman McInnes + comm - MPI communicator 16198965ea79SLois Curfman McInnes . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1620db81eaa0SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 16218965ea79SLois Curfman McInnes . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 1622db81eaa0SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 16237f5ff6fdSBarry Smith - data - optional location of matrix data. Set data=PETSC_NULL (PETSC_NULL_SCALAR for Fortran users) for PETSc 1624dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 16258965ea79SLois Curfman McInnes 16268965ea79SLois Curfman McInnes Output Parameter: 1627477f1c0bSLois Curfman McInnes . A - the matrix 16288965ea79SLois Curfman McInnes 1629b259b22eSLois Curfman McInnes Notes: 163039ddd567SLois Curfman McInnes The dense format is fully compatible with standard Fortran 77 163139ddd567SLois Curfman McInnes storage by columns. 16328965ea79SLois Curfman McInnes 163318f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 163418f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 16357f5ff6fdSBarry Smith set data=PETSC_NULL (PETSC_NULL_SCALAR for Fortran users). 163618f449edSLois Curfman McInnes 16378965ea79SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 16388965ea79SLois Curfman McInnes (possibly both). 16398965ea79SLois Curfman McInnes 1640027ccd11SLois Curfman McInnes Level: intermediate 1641027ccd11SLois Curfman McInnes 164239ddd567SLois Curfman McInnes .keywords: matrix,dense, parallel 16438965ea79SLois Curfman McInnes 164439ddd567SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 16458965ea79SLois Curfman McInnes @*/ 1646be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPIDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 16478965ea79SLois Curfman McInnes { 16486849ba73SBarry Smith PetscErrorCode ierr; 164913f74950SBarry Smith PetscMPIInt size; 16508965ea79SLois Curfman McInnes 16513a40ed3dSBarry Smith PetscFunctionBegin; 1652f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 1653f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 1654273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1655273d9f13SBarry Smith if (size > 1) { 1656273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIDENSE);CHKERRQ(ierr); 1657273d9f13SBarry Smith ierr = MatMPIDenseSetPreallocation(*A,data);CHKERRQ(ierr); 1658273d9f13SBarry Smith } else { 1659273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr); 1660273d9f13SBarry Smith ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr); 16618c469469SLois Curfman McInnes } 16623a40ed3dSBarry Smith PetscFunctionReturn(0); 16638965ea79SLois Curfman McInnes } 16648965ea79SLois Curfman McInnes 16654a2ae208SSatish Balay #undef __FUNCT__ 16664a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIDense" 16676849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat) 16688965ea79SLois Curfman McInnes { 16698965ea79SLois Curfman McInnes Mat mat; 16703501a2bdSLois Curfman McInnes Mat_MPIDense *a,*oldmat = (Mat_MPIDense*)A->data; 1671dfbe8321SBarry Smith PetscErrorCode ierr; 16728965ea79SLois Curfman McInnes 16733a40ed3dSBarry Smith PetscFunctionBegin; 16748965ea79SLois Curfman McInnes *newmat = 0; 16757adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)A)->comm,&mat);CHKERRQ(ierr); 1676899cda47SBarry Smith ierr = MatSetSizes(mat,A->rmap.n,A->cmap.n,A->rmap.N,A->cmap.N);CHKERRQ(ierr); 16777adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)A)->type_name);CHKERRQ(ierr); 1678834f8fabSBarry Smith a = (Mat_MPIDense*)mat->data; 1679e04c1aa4SHong Zhang ierr = PetscMemcpy(mat->ops,A->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 16803501a2bdSLois Curfman McInnes mat->factor = A->factor; 1681c456f294SBarry Smith mat->assembled = PETSC_TRUE; 1682273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 16838965ea79SLois Curfman McInnes 1684899cda47SBarry Smith mat->rmap.rstart = A->rmap.rstart; 1685899cda47SBarry Smith mat->rmap.rend = A->rmap.rend; 16868965ea79SLois Curfman McInnes a->size = oldmat->size; 16878965ea79SLois Curfman McInnes a->rank = oldmat->rank; 1688e0fa3b82SLois Curfman McInnes mat->insertmode = NOT_SET_VALUES; 1689b9b97703SBarry Smith a->nvec = oldmat->nvec; 16903782ba37SSatish Balay a->donotstash = oldmat->donotstash; 1691e04c1aa4SHong Zhang 1692899cda47SBarry Smith ierr = PetscMemcpy(mat->rmap.range,A->rmap.range,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr); 1693899cda47SBarry Smith ierr = PetscMemcpy(mat->cmap.range,A->cmap.range,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr); 16947adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)A)->comm,1,&mat->stash);CHKERRQ(ierr); 16958965ea79SLois Curfman McInnes 1696329f5518SBarry Smith ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 16975609ef8eSBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 169852e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 169901b82886SBarry Smith 170001b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK) 170101b82886SBarry Smith ierr = PetscMemcpy(mat->spptr,A->spptr,sizeof(Mat_Plapack));CHKERRQ(ierr); 170201b82886SBarry Smith #endif 17038965ea79SLois Curfman McInnes *newmat = mat; 17043a40ed3dSBarry Smith PetscFunctionReturn(0); 17058965ea79SLois Curfman McInnes } 17068965ea79SLois Curfman McInnes 1707e090d566SSatish Balay #include "petscsys.h" 17088965ea79SLois Curfman McInnes 17094a2ae208SSatish Balay #undef __FUNCT__ 17104a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIDense_DenseInFile" 1711f69a0ea3SMatthew Knepley PetscErrorCode MatLoad_MPIDense_DenseInFile(MPI_Comm comm,PetscInt fd,PetscInt M,PetscInt N, MatType type,Mat *newmat) 171290ace30eSBarry Smith { 17136849ba73SBarry Smith PetscErrorCode ierr; 171432dcc486SBarry Smith PetscMPIInt rank,size; 171513f74950SBarry Smith PetscInt *rowners,i,m,nz,j; 171687828ca2SBarry Smith PetscScalar *array,*vals,*vals_ptr; 171790ace30eSBarry Smith MPI_Status status; 171890ace30eSBarry Smith 17193a40ed3dSBarry Smith PetscFunctionBegin; 1720d132466eSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 1721d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 172290ace30eSBarry Smith 172390ace30eSBarry Smith /* determine ownership of all rows */ 172490ace30eSBarry Smith m = M/size + ((M % size) > rank); 172513f74950SBarry Smith ierr = PetscMalloc((size+2)*sizeof(PetscInt),&rowners);CHKERRQ(ierr); 172613f74950SBarry Smith ierr = MPI_Allgather(&m,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr); 172790ace30eSBarry Smith rowners[0] = 0; 172890ace30eSBarry Smith for (i=2; i<=size; i++) { 172990ace30eSBarry Smith rowners[i] += rowners[i-1]; 173090ace30eSBarry Smith } 173190ace30eSBarry Smith 1732f69a0ea3SMatthew Knepley ierr = MatCreate(comm,newmat);CHKERRQ(ierr); 1733f69a0ea3SMatthew Knepley ierr = MatSetSizes(*newmat,m,PETSC_DECIDE,M,N);CHKERRQ(ierr); 1734be5d1d56SKris Buschelman ierr = MatSetType(*newmat,type);CHKERRQ(ierr); 1735878740d9SKris Buschelman ierr = MatMPIDenseSetPreallocation(*newmat,PETSC_NULL);CHKERRQ(ierr); 173690ace30eSBarry Smith ierr = MatGetArray(*newmat,&array);CHKERRQ(ierr); 173790ace30eSBarry Smith 173890ace30eSBarry Smith if (!rank) { 173987828ca2SBarry Smith ierr = PetscMalloc(m*N*sizeof(PetscScalar),&vals);CHKERRQ(ierr); 174090ace30eSBarry Smith 174190ace30eSBarry Smith /* read in my part of the matrix numerical values */ 17420752156aSBarry Smith ierr = PetscBinaryRead(fd,vals,m*N,PETSC_SCALAR);CHKERRQ(ierr); 174390ace30eSBarry Smith 174490ace30eSBarry Smith /* insert into matrix-by row (this is why cannot directly read into array */ 174590ace30eSBarry Smith vals_ptr = vals; 174690ace30eSBarry Smith for (i=0; i<m; i++) { 174790ace30eSBarry Smith for (j=0; j<N; j++) { 174890ace30eSBarry Smith array[i + j*m] = *vals_ptr++; 174990ace30eSBarry Smith } 175090ace30eSBarry Smith } 175190ace30eSBarry Smith 175290ace30eSBarry Smith /* read in other processors and ship out */ 175390ace30eSBarry Smith for (i=1; i<size; i++) { 175490ace30eSBarry Smith nz = (rowners[i+1] - rowners[i])*N; 17550752156aSBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 17567adad957SLisandro Dalcin ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)(*newmat))->tag,comm);CHKERRQ(ierr); 175790ace30eSBarry Smith } 17583a40ed3dSBarry Smith } else { 175990ace30eSBarry Smith /* receive numeric values */ 176087828ca2SBarry Smith ierr = PetscMalloc(m*N*sizeof(PetscScalar),&vals);CHKERRQ(ierr); 176190ace30eSBarry Smith 176290ace30eSBarry Smith /* receive message of values*/ 17637adad957SLisandro Dalcin ierr = MPI_Recv(vals,m*N,MPIU_SCALAR,0,((PetscObject)(*newmat))->tag,comm,&status);CHKERRQ(ierr); 176490ace30eSBarry Smith 176590ace30eSBarry Smith /* insert into matrix-by row (this is why cannot directly read into array */ 176690ace30eSBarry Smith vals_ptr = vals; 176790ace30eSBarry Smith for (i=0; i<m; i++) { 176890ace30eSBarry Smith for (j=0; j<N; j++) { 176990ace30eSBarry Smith array[i + j*m] = *vals_ptr++; 177090ace30eSBarry Smith } 177190ace30eSBarry Smith } 177290ace30eSBarry Smith } 1773606d414cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 1774606d414cSSatish Balay ierr = PetscFree(vals);CHKERRQ(ierr); 17756d4a8577SBarry Smith ierr = MatAssemblyBegin(*newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 17766d4a8577SBarry Smith ierr = MatAssemblyEnd(*newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 17773a40ed3dSBarry Smith PetscFunctionReturn(0); 177890ace30eSBarry Smith } 177990ace30eSBarry Smith 17804a2ae208SSatish Balay #undef __FUNCT__ 17814a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIDense" 1782f69a0ea3SMatthew Knepley PetscErrorCode MatLoad_MPIDense(PetscViewer viewer, MatType type,Mat *newmat) 17838965ea79SLois Curfman McInnes { 17848965ea79SLois Curfman McInnes Mat A; 178587828ca2SBarry Smith PetscScalar *vals,*svals; 178619bcc07fSBarry Smith MPI_Comm comm = ((PetscObject)viewer)->comm; 17878965ea79SLois Curfman McInnes MPI_Status status; 178813f74950SBarry Smith PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*rowners,*sndcounts,m,maxnz; 178913f74950SBarry Smith PetscInt header[4],*rowlengths = 0,M,N,*cols; 179013f74950SBarry Smith PetscInt *ourlens,*procsnz = 0,*offlens,jj,*mycols,*smycols; 179113f74950SBarry Smith PetscInt i,nz,j,rstart,rend; 179213f74950SBarry Smith int fd; 17936849ba73SBarry Smith PetscErrorCode ierr; 17948965ea79SLois Curfman McInnes 17953a40ed3dSBarry Smith PetscFunctionBegin; 1796d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1797d132466eSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 17988965ea79SLois Curfman McInnes if (!rank) { 1799b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 18000752156aSBarry Smith ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 1801552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 18028965ea79SLois Curfman McInnes } 18038965ea79SLois Curfman McInnes 180413f74950SBarry Smith ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 180590ace30eSBarry Smith M = header[1]; N = header[2]; nz = header[3]; 180690ace30eSBarry Smith 180790ace30eSBarry Smith /* 180890ace30eSBarry Smith Handle case where matrix is stored on disk as a dense matrix 180990ace30eSBarry Smith */ 181090ace30eSBarry Smith if (nz == MATRIX_BINARY_FORMAT_DENSE) { 1811be5d1d56SKris Buschelman ierr = MatLoad_MPIDense_DenseInFile(comm,fd,M,N,type,newmat);CHKERRQ(ierr); 18123a40ed3dSBarry Smith PetscFunctionReturn(0); 181390ace30eSBarry Smith } 181490ace30eSBarry Smith 18158965ea79SLois Curfman McInnes /* determine ownership of all rows */ 1816e44c0bd4SBarry Smith m = PetscMPIIntCast(M/size + ((M % size) > rank)); 1817e44c0bd4SBarry Smith ierr = PetscMalloc((size+2)*sizeof(PetscMPIInt),&rowners);CHKERRQ(ierr); 1818ca161407SBarry Smith ierr = MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 18198965ea79SLois Curfman McInnes rowners[0] = 0; 18208965ea79SLois Curfman McInnes for (i=2; i<=size; i++) { 18218965ea79SLois Curfman McInnes rowners[i] += rowners[i-1]; 18228965ea79SLois Curfman McInnes } 18238965ea79SLois Curfman McInnes rstart = rowners[rank]; 18248965ea79SLois Curfman McInnes rend = rowners[rank+1]; 18258965ea79SLois Curfman McInnes 18268965ea79SLois Curfman McInnes /* distribute row lengths to all processors */ 182713f74950SBarry Smith ierr = PetscMalloc(2*(rend-rstart+1)*sizeof(PetscInt),&ourlens);CHKERRQ(ierr); 18288965ea79SLois Curfman McInnes offlens = ourlens + (rend-rstart); 18298965ea79SLois Curfman McInnes if (!rank) { 183013f74950SBarry Smith ierr = PetscMalloc(M*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 18310752156aSBarry Smith ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 183213f74950SBarry Smith ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr); 18338965ea79SLois Curfman McInnes for (i=0; i<size; i++) sndcounts[i] = rowners[i+1] - rowners[i]; 18341466f1e1SBarry Smith ierr = MPI_Scatterv(rowlengths,sndcounts,rowners,MPIU_INT,ourlens,rend-rstart,MPIU_INT,0,comm);CHKERRQ(ierr); 1835606d414cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 1836ca161407SBarry Smith } else { 18371466f1e1SBarry Smith ierr = MPI_Scatterv(0,0,0,MPIU_INT,ourlens,rend-rstart,MPIU_INT,0,comm);CHKERRQ(ierr); 18388965ea79SLois Curfman McInnes } 18398965ea79SLois Curfman McInnes 18408965ea79SLois Curfman McInnes if (!rank) { 18418965ea79SLois Curfman McInnes /* calculate the number of nonzeros on each processor */ 184213f74950SBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 184313f74950SBarry Smith ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 18448965ea79SLois Curfman McInnes for (i=0; i<size; i++) { 18458965ea79SLois Curfman McInnes for (j=rowners[i]; j< rowners[i+1]; j++) { 18468965ea79SLois Curfman McInnes procsnz[i] += rowlengths[j]; 18478965ea79SLois Curfman McInnes } 18488965ea79SLois Curfman McInnes } 1849606d414cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 18508965ea79SLois Curfman McInnes 18518965ea79SLois Curfman McInnes /* determine max buffer needed and allocate it */ 18528965ea79SLois Curfman McInnes maxnz = 0; 18538965ea79SLois Curfman McInnes for (i=0; i<size; i++) { 18540452661fSBarry Smith maxnz = PetscMax(maxnz,procsnz[i]); 18558965ea79SLois Curfman McInnes } 185613f74950SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 18578965ea79SLois Curfman McInnes 18588965ea79SLois Curfman McInnes /* read in my part of the matrix column indices */ 18598965ea79SLois Curfman McInnes nz = procsnz[0]; 186013f74950SBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&mycols);CHKERRQ(ierr); 18610752156aSBarry Smith ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 18628965ea79SLois Curfman McInnes 18638965ea79SLois Curfman McInnes /* read in every one elses and ship off */ 18648965ea79SLois Curfman McInnes for (i=1; i<size; i++) { 18658965ea79SLois Curfman McInnes nz = procsnz[i]; 18660752156aSBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 186713f74950SBarry Smith ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 18688965ea79SLois Curfman McInnes } 1869606d414cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 18703a40ed3dSBarry Smith } else { 18718965ea79SLois Curfman McInnes /* determine buffer space needed for message */ 18728965ea79SLois Curfman McInnes nz = 0; 18738965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 18748965ea79SLois Curfman McInnes nz += ourlens[i]; 18758965ea79SLois Curfman McInnes } 187613f74950SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscInt),&mycols);CHKERRQ(ierr); 18778965ea79SLois Curfman McInnes 18788965ea79SLois Curfman McInnes /* receive message of column indices*/ 187913f74950SBarry Smith ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 188013f74950SBarry Smith ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 188129bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 18828965ea79SLois Curfman McInnes } 18838965ea79SLois Curfman McInnes 18848965ea79SLois Curfman McInnes /* loop over local rows, determining number of off diagonal entries */ 188513f74950SBarry Smith ierr = PetscMemzero(offlens,m*sizeof(PetscInt));CHKERRQ(ierr); 18868965ea79SLois Curfman McInnes jj = 0; 18878965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 18888965ea79SLois Curfman McInnes for (j=0; j<ourlens[i]; j++) { 18898965ea79SLois Curfman McInnes if (mycols[jj] < rstart || mycols[jj] >= rend) offlens[i]++; 18908965ea79SLois Curfman McInnes jj++; 18918965ea79SLois Curfman McInnes } 18928965ea79SLois Curfman McInnes } 18938965ea79SLois Curfman McInnes 18948965ea79SLois Curfman McInnes /* create our matrix */ 18958965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 18968965ea79SLois Curfman McInnes ourlens[i] -= offlens[i]; 18978965ea79SLois Curfman McInnes } 1898f69a0ea3SMatthew Knepley ierr = MatCreate(comm,newmat);CHKERRQ(ierr); 1899f69a0ea3SMatthew Knepley ierr = MatSetSizes(*newmat,m,PETSC_DECIDE,M,N);CHKERRQ(ierr); 1900be5d1d56SKris Buschelman ierr = MatSetType(*newmat,type);CHKERRQ(ierr); 1901878740d9SKris Buschelman ierr = MatMPIDenseSetPreallocation(*newmat,PETSC_NULL);CHKERRQ(ierr); 19028965ea79SLois Curfman McInnes A = *newmat; 19038965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 19048965ea79SLois Curfman McInnes ourlens[i] += offlens[i]; 19058965ea79SLois Curfman McInnes } 19068965ea79SLois Curfman McInnes 19078965ea79SLois Curfman McInnes if (!rank) { 190887828ca2SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&vals);CHKERRQ(ierr); 19098965ea79SLois Curfman McInnes 19108965ea79SLois Curfman McInnes /* read in my part of the matrix numerical values */ 19118965ea79SLois Curfman McInnes nz = procsnz[0]; 19120752156aSBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 19138965ea79SLois Curfman McInnes 19148965ea79SLois Curfman McInnes /* insert into matrix */ 19158965ea79SLois Curfman McInnes jj = rstart; 19168965ea79SLois Curfman McInnes smycols = mycols; 19178965ea79SLois Curfman McInnes svals = vals; 19188965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 19198965ea79SLois Curfman McInnes ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 19208965ea79SLois Curfman McInnes smycols += ourlens[i]; 19218965ea79SLois Curfman McInnes svals += ourlens[i]; 19228965ea79SLois Curfman McInnes jj++; 19238965ea79SLois Curfman McInnes } 19248965ea79SLois Curfman McInnes 19258965ea79SLois Curfman McInnes /* read in other processors and ship out */ 19268965ea79SLois Curfman McInnes for (i=1; i<size; i++) { 19278965ea79SLois Curfman McInnes nz = procsnz[i]; 19280752156aSBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 19297adad957SLisandro Dalcin ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)A)->tag,comm);CHKERRQ(ierr); 19308965ea79SLois Curfman McInnes } 1931606d414cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 19323a40ed3dSBarry Smith } else { 19338965ea79SLois Curfman McInnes /* receive numeric values */ 193484d528b1SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&vals);CHKERRQ(ierr); 19358965ea79SLois Curfman McInnes 19368965ea79SLois Curfman McInnes /* receive message of values*/ 19377adad957SLisandro Dalcin ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)A)->tag,comm,&status);CHKERRQ(ierr); 1938ca161407SBarry Smith ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 193929bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 19408965ea79SLois Curfman McInnes 19418965ea79SLois Curfman McInnes /* insert into matrix */ 19428965ea79SLois Curfman McInnes jj = rstart; 19438965ea79SLois Curfman McInnes smycols = mycols; 19448965ea79SLois Curfman McInnes svals = vals; 19458965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 19468965ea79SLois Curfman McInnes ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 19478965ea79SLois Curfman McInnes smycols += ourlens[i]; 19488965ea79SLois Curfman McInnes svals += ourlens[i]; 19498965ea79SLois Curfman McInnes jj++; 19508965ea79SLois Curfman McInnes } 19518965ea79SLois Curfman McInnes } 1952606d414cSSatish Balay ierr = PetscFree(ourlens);CHKERRQ(ierr); 1953606d414cSSatish Balay ierr = PetscFree(vals);CHKERRQ(ierr); 1954606d414cSSatish Balay ierr = PetscFree(mycols);CHKERRQ(ierr); 1955606d414cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 19568965ea79SLois Curfman McInnes 19576d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 19586d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 19593a40ed3dSBarry Smith PetscFunctionReturn(0); 19608965ea79SLois Curfman McInnes } 196190ace30eSBarry Smith 19626e4ee0c6SHong Zhang #undef __FUNCT__ 19636e4ee0c6SHong Zhang #define __FUNCT__ "MatEqual_MPIDense" 19646e4ee0c6SHong Zhang PetscErrorCode MatEqual_MPIDense(Mat A,Mat B,PetscTruth *flag) 19656e4ee0c6SHong Zhang { 19666e4ee0c6SHong Zhang Mat_MPIDense *matB = (Mat_MPIDense*)B->data,*matA = (Mat_MPIDense*)A->data; 19676e4ee0c6SHong Zhang Mat a,b; 19686e4ee0c6SHong Zhang PetscTruth flg; 19696e4ee0c6SHong Zhang PetscErrorCode ierr; 197090ace30eSBarry Smith 19716e4ee0c6SHong Zhang PetscFunctionBegin; 19726e4ee0c6SHong Zhang a = matA->A; 19736e4ee0c6SHong Zhang b = matB->A; 19746e4ee0c6SHong Zhang ierr = MatEqual(a,b,&flg);CHKERRQ(ierr); 19757adad957SLisandro Dalcin ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr); 19766e4ee0c6SHong Zhang PetscFunctionReturn(0); 19776e4ee0c6SHong Zhang } 197890ace30eSBarry Smith 197909d27a7eSBarry Smith #if defined(PETSC_HAVE_PLAPACK) 198009d27a7eSBarry Smith 198109d27a7eSBarry Smith #undef __FUNCT__ 198209d27a7eSBarry Smith #define __FUNCT__ "PetscPLAPACKFinalizePackage" 198309d27a7eSBarry Smith /*@C 198409d27a7eSBarry Smith PetscPLAPACKFinalizePackage - This function destroys everything in the Petsc interface to PLAPACK. 198509d27a7eSBarry Smith Level: developer 198609d27a7eSBarry Smith 198709d27a7eSBarry Smith .keywords: Petsc, destroy, package, PLAPACK 198809d27a7eSBarry Smith .seealso: PetscFinalize() 198909d27a7eSBarry Smith @*/ 199009d27a7eSBarry Smith PetscErrorCode PETSC_DLLEXPORT PetscPLAPACKFinalizePackage(void) 199109d27a7eSBarry Smith { 199209d27a7eSBarry Smith PetscErrorCode ierr; 199309d27a7eSBarry Smith 199409d27a7eSBarry Smith PetscFunctionBegin; 199509d27a7eSBarry Smith ierr = PLA_Finalize();CHKERRQ(ierr); 199609d27a7eSBarry Smith PetscFunctionReturn(0); 199709d27a7eSBarry Smith } 199809d27a7eSBarry Smith 199909d27a7eSBarry Smith #undef __FUNCT__ 200009d27a7eSBarry Smith #define __FUNCT__ "PetscPLAPACKInitializePackage" 200109d27a7eSBarry Smith /*@C 200209d27a7eSBarry Smith PetscPLAPACKInitializePackage - This function initializes everything in the Petsc interface to PLAPACK. It is 200309d27a7eSBarry Smith called from PetscDLLibraryRegister() when using dynamic libraries, and on the call to PetscInitialize() 200409d27a7eSBarry Smith when using static libraries. 200509d27a7eSBarry Smith 200609d27a7eSBarry Smith Input Parameter: 200709d27a7eSBarry Smith path - The dynamic library path, or PETSC_NULL 200809d27a7eSBarry Smith 200909d27a7eSBarry Smith Level: developer 201009d27a7eSBarry Smith 201109d27a7eSBarry Smith .keywords: Petsc, initialize, package, PLAPACK 201209d27a7eSBarry Smith .seealso: PetscInitializePackage(), PetscInitialize() 201309d27a7eSBarry Smith @*/ 201409d27a7eSBarry Smith PetscErrorCode PETSC_DLLEXPORT PetscPLAPACKInitializePackage(const char path[]) 201509d27a7eSBarry Smith { 2016*04fea9ffSBarry Smith MPI_Comm comm = PETSC_COMM_WORLD; 2017*04fea9ffSBarry Smith PetscMPIInt size; 201809d27a7eSBarry Smith PetscErrorCode ierr; 201909d27a7eSBarry Smith 202009d27a7eSBarry Smith PetscFunctionBegin; 202109d27a7eSBarry Smith if (!PLA_Initialized(PETSC_NULL)) { 202209d27a7eSBarry Smith 202309d27a7eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2024*04fea9ffSBarry Smith Plapack_nprows = 1; 2025*04fea9ffSBarry Smith Plapack_npcols = size; 202609d27a7eSBarry Smith 2027*04fea9ffSBarry Smith ierr = PLA_Comm_1D_to_2D(comm,Plapack_nprows,Plapack_npcols,&Plapack_comm_2d);CHKERRQ(ierr); 2028*04fea9ffSBarry Smith ierr = PLA_Init(Plapack_comm_2d);CHKERRQ(ierr); 202909d27a7eSBarry Smith ierr = PetscRegisterFinalize(PetscPLAPACKFinalizePackage);CHKERRQ(ierr); 203009d27a7eSBarry Smith } 203109d27a7eSBarry Smith PetscFunctionReturn(0); 203209d27a7eSBarry Smith } 203390ace30eSBarry Smith 203490ace30eSBarry Smith 203509d27a7eSBarry Smith #endif 2036