xref: /petsc/src/mat/impls/dense/mpi/mpidense.c (revision 04fea9ffb6098903af11c91df9842ba83d59ff70)
1be1d678aSKris Buschelman #define PETSCMAT_DLL
2be1d678aSKris Buschelman 
3ed3cc1f0SBarry Smith /*
4ed3cc1f0SBarry Smith    Basic functions for basic parallel dense matrices.
5ed3cc1f0SBarry Smith */
6ed3cc1f0SBarry Smith 
7*04fea9ffSBarry Smith 
889ac3759SBarry Smith #include "src/mat/impls/dense/mpi/mpidense.h"    /*I   "petscmat.h"  I*/
9*04fea9ffSBarry Smith PetscInt Plapack_nprows,Plapack_npcols;
10*04fea9ffSBarry Smith MPI_Comm Plapack_comm_2d;
118965ea79SLois Curfman McInnes 
12ba8c8a56SBarry Smith #undef __FUNCT__
13ab92ecdeSBarry Smith #define __FUNCT__ "MatDenseGetLocalMatrix"
14ab92ecdeSBarry Smith /*@
15ab92ecdeSBarry Smith 
16ab92ecdeSBarry Smith       MatDenseGetLocalMatrix - For a MATMPIDENSE or MATSEQDENSE matrix returns the sequential
17ab92ecdeSBarry Smith               matrix that represents the operator. For sequential matrices it returns itself.
18ab92ecdeSBarry Smith 
19ab92ecdeSBarry Smith     Input Parameter:
20ab92ecdeSBarry Smith .      A - the Seq or MPI dense matrix
21ab92ecdeSBarry Smith 
22ab92ecdeSBarry Smith     Output Parameter:
23ab92ecdeSBarry Smith .      B - the inner matrix
24ab92ecdeSBarry Smith 
258e6c10adSSatish Balay     Level: intermediate
268e6c10adSSatish Balay 
27ab92ecdeSBarry Smith @*/
28ab92ecdeSBarry Smith PetscErrorCode MatDenseGetLocalMatrix(Mat A,Mat *B)
29ab92ecdeSBarry Smith {
30ab92ecdeSBarry Smith   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
31ab92ecdeSBarry Smith   PetscErrorCode ierr;
32ab92ecdeSBarry Smith   PetscTruth     flg;
33ab92ecdeSBarry Smith 
34ab92ecdeSBarry Smith   PetscFunctionBegin;
35ab92ecdeSBarry Smith   ierr = PetscTypeCompare((PetscObject)A,MATMPIDENSE,&flg);CHKERRQ(ierr);
36ab92ecdeSBarry Smith   if (flg) {
37ab92ecdeSBarry Smith     *B = mat->A;
38ab92ecdeSBarry Smith   } else {
39ab92ecdeSBarry Smith     *B = A;
40ab92ecdeSBarry Smith   }
41ab92ecdeSBarry Smith   PetscFunctionReturn(0);
42ab92ecdeSBarry Smith }
43ab92ecdeSBarry Smith 
44ab92ecdeSBarry Smith #undef __FUNCT__
45ba8c8a56SBarry Smith #define __FUNCT__ "MatGetRow_MPIDense"
46ba8c8a56SBarry Smith PetscErrorCode MatGetRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
47ba8c8a56SBarry Smith {
48ba8c8a56SBarry Smith   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
49ba8c8a56SBarry Smith   PetscErrorCode ierr;
50899cda47SBarry Smith   PetscInt       lrow,rstart = A->rmap.rstart,rend = A->rmap.rend;
51ba8c8a56SBarry Smith 
52ba8c8a56SBarry Smith   PetscFunctionBegin;
53ba8c8a56SBarry Smith   if (row < rstart || row >= rend) SETERRQ(PETSC_ERR_SUP,"only local rows")
54ba8c8a56SBarry Smith   lrow = row - rstart;
55ba8c8a56SBarry Smith   ierr = MatGetRow(mat->A,lrow,nz,(const PetscInt **)idx,(const PetscScalar **)v);CHKERRQ(ierr);
56ba8c8a56SBarry Smith   PetscFunctionReturn(0);
57ba8c8a56SBarry Smith }
58ba8c8a56SBarry Smith 
59ba8c8a56SBarry Smith #undef __FUNCT__
60ba8c8a56SBarry Smith #define __FUNCT__ "MatRestoreRow_MPIDense"
61ba8c8a56SBarry Smith PetscErrorCode MatRestoreRow_MPIDense(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
62ba8c8a56SBarry Smith {
63ba8c8a56SBarry Smith   PetscErrorCode ierr;
64ba8c8a56SBarry Smith 
65ba8c8a56SBarry Smith   PetscFunctionBegin;
66ba8c8a56SBarry Smith   if (idx) {ierr = PetscFree(*idx);CHKERRQ(ierr);}
67ba8c8a56SBarry Smith   if (v) {ierr = PetscFree(*v);CHKERRQ(ierr);}
68ba8c8a56SBarry Smith   PetscFunctionReturn(0);
69ba8c8a56SBarry Smith }
70ba8c8a56SBarry Smith 
710de54da6SSatish Balay EXTERN_C_BEGIN
724a2ae208SSatish Balay #undef __FUNCT__
734a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIDense"
74be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPIDense(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *B)
750de54da6SSatish Balay {
760de54da6SSatish Balay   Mat_MPIDense   *mdn = (Mat_MPIDense*)A->data;
776849ba73SBarry Smith   PetscErrorCode ierr;
78899cda47SBarry Smith   PetscInt       m = A->rmap.n,rstart = A->rmap.rstart;
7987828ca2SBarry Smith   PetscScalar    *array;
800de54da6SSatish Balay   MPI_Comm       comm;
810de54da6SSatish Balay 
820de54da6SSatish Balay   PetscFunctionBegin;
83899cda47SBarry Smith   if (A->rmap.N != A->cmap.N) SETERRQ(PETSC_ERR_SUP,"Only square matrices supported.");
840de54da6SSatish Balay 
850de54da6SSatish Balay   /* The reuse aspect is not implemented efficiently */
860de54da6SSatish Balay   if (reuse) { ierr = MatDestroy(*B);CHKERRQ(ierr);}
870de54da6SSatish Balay 
880de54da6SSatish Balay   ierr = PetscObjectGetComm((PetscObject)(mdn->A),&comm);CHKERRQ(ierr);
890de54da6SSatish Balay   ierr = MatGetArray(mdn->A,&array);CHKERRQ(ierr);
90f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,B);CHKERRQ(ierr);
91f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*B,m,m,m,m);CHKERRQ(ierr);
927adad957SLisandro Dalcin   ierr = MatSetType(*B,((PetscObject)mdn->A)->type_name);CHKERRQ(ierr);
935c5985e7SKris Buschelman   ierr = MatSeqDenseSetPreallocation(*B,array+m*rstart);CHKERRQ(ierr);
940de54da6SSatish Balay   ierr = MatRestoreArray(mdn->A,&array);CHKERRQ(ierr);
950de54da6SSatish Balay   ierr = MatAssemblyBegin(*B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
960de54da6SSatish Balay   ierr = MatAssemblyEnd(*B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
970de54da6SSatish Balay 
980de54da6SSatish Balay   *iscopy = PETSC_TRUE;
990de54da6SSatish Balay   PetscFunctionReturn(0);
1000de54da6SSatish Balay }
1010de54da6SSatish Balay EXTERN_C_END
1020de54da6SSatish Balay 
1034a2ae208SSatish Balay #undef __FUNCT__
1044a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIDense"
10513f74950SBarry Smith PetscErrorCode MatSetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],const PetscScalar v[],InsertMode addv)
1068965ea79SLois Curfman McInnes {
10739b7565bSBarry Smith   Mat_MPIDense   *A = (Mat_MPIDense*)mat->data;
108dfbe8321SBarry Smith   PetscErrorCode ierr;
109899cda47SBarry Smith   PetscInt       i,j,rstart = mat->rmap.rstart,rend = mat->rmap.rend,row;
110273d9f13SBarry Smith   PetscTruth     roworiented = A->roworiented;
1118965ea79SLois Curfman McInnes 
1123a40ed3dSBarry Smith   PetscFunctionBegin;
1138965ea79SLois Curfman McInnes   for (i=0; i<m; i++) {
1145ef9f2a5SBarry Smith     if (idxm[i] < 0) continue;
115899cda47SBarry Smith     if (idxm[i] >= mat->rmap.N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large");
1168965ea79SLois Curfman McInnes     if (idxm[i] >= rstart && idxm[i] < rend) {
1178965ea79SLois Curfman McInnes       row = idxm[i] - rstart;
11839b7565bSBarry Smith       if (roworiented) {
11939b7565bSBarry Smith         ierr = MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv);CHKERRQ(ierr);
1203a40ed3dSBarry Smith       } else {
1218965ea79SLois Curfman McInnes         for (j=0; j<n; j++) {
1225ef9f2a5SBarry Smith           if (idxn[j] < 0) continue;
123899cda47SBarry Smith           if (idxn[j] >= mat->cmap.N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Column too large");
12439b7565bSBarry Smith           ierr = MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv);CHKERRQ(ierr);
12539b7565bSBarry Smith         }
1268965ea79SLois Curfman McInnes       }
1273a40ed3dSBarry Smith     } else {
1283782ba37SSatish Balay       if (!A->donotstash) {
12939b7565bSBarry Smith         if (roworiented) {
1308798bf22SSatish Balay           ierr = MatStashValuesRow_Private(&mat->stash,idxm[i],n,idxn,v+i*n);CHKERRQ(ierr);
131d36fbae8SSatish Balay         } else {
1328798bf22SSatish Balay           ierr = MatStashValuesCol_Private(&mat->stash,idxm[i],n,idxn,v+i,m);CHKERRQ(ierr);
13339b7565bSBarry Smith         }
134b49de8d1SLois Curfman McInnes       }
135b49de8d1SLois Curfman McInnes     }
1363782ba37SSatish Balay   }
1373a40ed3dSBarry Smith   PetscFunctionReturn(0);
138b49de8d1SLois Curfman McInnes }
139b49de8d1SLois Curfman McInnes 
1404a2ae208SSatish Balay #undef __FUNCT__
1414a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIDense"
14213f74950SBarry Smith PetscErrorCode MatGetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
143b49de8d1SLois Curfman McInnes {
144b49de8d1SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
145dfbe8321SBarry Smith   PetscErrorCode ierr;
146899cda47SBarry Smith   PetscInt       i,j,rstart = mat->rmap.rstart,rend = mat->rmap.rend,row;
147b49de8d1SLois Curfman McInnes 
1483a40ed3dSBarry Smith   PetscFunctionBegin;
149b49de8d1SLois Curfman McInnes   for (i=0; i<m; i++) {
15097e567efSBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); */
151899cda47SBarry Smith     if (idxm[i] >= mat->rmap.N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large");
152b49de8d1SLois Curfman McInnes     if (idxm[i] >= rstart && idxm[i] < rend) {
153b49de8d1SLois Curfman McInnes       row = idxm[i] - rstart;
154b49de8d1SLois Curfman McInnes       for (j=0; j<n; j++) {
15597e567efSBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); */
156899cda47SBarry Smith         if (idxn[j] >= mat->cmap.N) {
15729bbc08cSBarry Smith           SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Column too large");
158a8c6a408SBarry Smith         }
159b49de8d1SLois Curfman McInnes         ierr = MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j);CHKERRQ(ierr);
160b49de8d1SLois Curfman McInnes       }
161a8c6a408SBarry Smith     } else {
16229bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Only local values currently supported");
1638965ea79SLois Curfman McInnes     }
1648965ea79SLois Curfman McInnes   }
1653a40ed3dSBarry Smith   PetscFunctionReturn(0);
1668965ea79SLois Curfman McInnes }
1678965ea79SLois Curfman McInnes 
1684a2ae208SSatish Balay #undef __FUNCT__
1694a2ae208SSatish Balay #define __FUNCT__ "MatGetArray_MPIDense"
170dfbe8321SBarry Smith PetscErrorCode MatGetArray_MPIDense(Mat A,PetscScalar *array[])
171ff14e315SSatish Balay {
172ff14e315SSatish Balay   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
173dfbe8321SBarry Smith   PetscErrorCode ierr;
174ff14e315SSatish Balay 
1753a40ed3dSBarry Smith   PetscFunctionBegin;
176ff14e315SSatish Balay   ierr = MatGetArray(a->A,array);CHKERRQ(ierr);
1773a40ed3dSBarry Smith   PetscFunctionReturn(0);
178ff14e315SSatish Balay }
179ff14e315SSatish Balay 
1804a2ae208SSatish Balay #undef __FUNCT__
1814a2ae208SSatish Balay #define __FUNCT__ "MatGetSubMatrix_MPIDense"
18213f74950SBarry Smith static PetscErrorCode MatGetSubMatrix_MPIDense(Mat A,IS isrow,IS iscol,PetscInt cs,MatReuse scall,Mat *B)
183ca3fa75bSLois Curfman McInnes {
184ca3fa75bSLois Curfman McInnes   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data,*newmatd;
185ca3fa75bSLois Curfman McInnes   Mat_SeqDense   *lmat = (Mat_SeqDense*)mat->A->data;
1866849ba73SBarry Smith   PetscErrorCode ierr;
18713f74950SBarry Smith   PetscInt       i,j,*irow,*icol,rstart,rend,nrows,ncols,nlrows,nlcols;
18887828ca2SBarry Smith   PetscScalar    *av,*bv,*v = lmat->v;
189ca3fa75bSLois Curfman McInnes   Mat            newmat;
190ca3fa75bSLois Curfman McInnes 
191ca3fa75bSLois Curfman McInnes   PetscFunctionBegin;
192ca3fa75bSLois Curfman McInnes   ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr);
193ca3fa75bSLois Curfman McInnes   ierr = ISGetIndices(iscol,&icol);CHKERRQ(ierr);
194b9b97703SBarry Smith   ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr);
195b9b97703SBarry Smith   ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr);
196ca3fa75bSLois Curfman McInnes 
197ca3fa75bSLois Curfman McInnes   /* No parallel redistribution currently supported! Should really check each index set
1987eba5e9cSLois Curfman McInnes      to comfirm that it is OK.  ... Currently supports only submatrix same partitioning as
1997eba5e9cSLois Curfman McInnes      original matrix! */
200ca3fa75bSLois Curfman McInnes 
201ca3fa75bSLois Curfman McInnes   ierr = MatGetLocalSize(A,&nlrows,&nlcols);CHKERRQ(ierr);
2027eba5e9cSLois Curfman McInnes   ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr);
203ca3fa75bSLois Curfman McInnes 
204ca3fa75bSLois Curfman McInnes   /* Check submatrix call */
205ca3fa75bSLois Curfman McInnes   if (scall == MAT_REUSE_MATRIX) {
20629bbc08cSBarry Smith     /* SETERRQ(PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */
2077eba5e9cSLois Curfman McInnes     /* Really need to test rows and column sizes! */
208ca3fa75bSLois Curfman McInnes     newmat = *B;
209ca3fa75bSLois Curfman McInnes   } else {
210ca3fa75bSLois Curfman McInnes     /* Create and fill new matrix */
2117adad957SLisandro Dalcin     ierr = MatCreate(((PetscObject)A)->comm,&newmat);CHKERRQ(ierr);
212f69a0ea3SMatthew Knepley     ierr = MatSetSizes(newmat,nrows,cs,PETSC_DECIDE,ncols);CHKERRQ(ierr);
2137adad957SLisandro Dalcin     ierr = MatSetType(newmat,((PetscObject)A)->type_name);CHKERRQ(ierr);
214878740d9SKris Buschelman     ierr = MatMPIDenseSetPreallocation(newmat,PETSC_NULL);CHKERRQ(ierr);
215ca3fa75bSLois Curfman McInnes   }
216ca3fa75bSLois Curfman McInnes 
217ca3fa75bSLois Curfman McInnes   /* Now extract the data pointers and do the copy, column at a time */
218ca3fa75bSLois Curfman McInnes   newmatd = (Mat_MPIDense*)newmat->data;
219ca3fa75bSLois Curfman McInnes   bv      = ((Mat_SeqDense *)newmatd->A->data)->v;
220ca3fa75bSLois Curfman McInnes 
221ca3fa75bSLois Curfman McInnes   for (i=0; i<ncols; i++) {
222ca3fa75bSLois Curfman McInnes     av = v + nlrows*icol[i];
223ca3fa75bSLois Curfman McInnes     for (j=0; j<nrows; j++) {
2247eba5e9cSLois Curfman McInnes       *bv++ = av[irow[j] - rstart];
225ca3fa75bSLois Curfman McInnes     }
226ca3fa75bSLois Curfman McInnes   }
227ca3fa75bSLois Curfman McInnes 
228ca3fa75bSLois Curfman McInnes   /* Assemble the matrices so that the correct flags are set */
229ca3fa75bSLois Curfman McInnes   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
230ca3fa75bSLois Curfman McInnes   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
231ca3fa75bSLois Curfman McInnes 
232ca3fa75bSLois Curfman McInnes   /* Free work space */
233ca3fa75bSLois Curfman McInnes   ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr);
234ca3fa75bSLois Curfman McInnes   ierr = ISRestoreIndices(iscol,&icol);CHKERRQ(ierr);
235ca3fa75bSLois Curfman McInnes   *B = newmat;
236ca3fa75bSLois Curfman McInnes   PetscFunctionReturn(0);
237ca3fa75bSLois Curfman McInnes }
238ca3fa75bSLois Curfman McInnes 
2394a2ae208SSatish Balay #undef __FUNCT__
2404a2ae208SSatish Balay #define __FUNCT__ "MatRestoreArray_MPIDense"
241dfbe8321SBarry Smith PetscErrorCode MatRestoreArray_MPIDense(Mat A,PetscScalar *array[])
242ff14e315SSatish Balay {
2433a40ed3dSBarry Smith   PetscFunctionBegin;
2443a40ed3dSBarry Smith   PetscFunctionReturn(0);
245ff14e315SSatish Balay }
246ff14e315SSatish Balay 
2474a2ae208SSatish Balay #undef __FUNCT__
2484a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIDense"
249dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode)
2508965ea79SLois Curfman McInnes {
25139ddd567SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
2527adad957SLisandro Dalcin   MPI_Comm       comm = ((PetscObject)mat)->comm;
253dfbe8321SBarry Smith   PetscErrorCode ierr;
25413f74950SBarry Smith   PetscInt       nstash,reallocs;
2558965ea79SLois Curfman McInnes   InsertMode     addv;
2568965ea79SLois Curfman McInnes 
2573a40ed3dSBarry Smith   PetscFunctionBegin;
2588965ea79SLois Curfman McInnes   /* make sure all processors are either in INSERTMODE or ADDMODE */
259ca161407SBarry Smith   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,comm);CHKERRQ(ierr);
2607056b6fcSBarry Smith   if (addv == (ADD_VALUES|INSERT_VALUES)) {
26129bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Cannot mix adds/inserts on different procs");
2628965ea79SLois Curfman McInnes   }
263e0fa3b82SLois Curfman McInnes   mat->insertmode = addv; /* in case this processor had no cache */
2648965ea79SLois Curfman McInnes 
2651e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap.range);CHKERRQ(ierr);
2668798bf22SSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
267ae15b995SBarry Smith   ierr = PetscInfo2(mdn->A,"Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
2683a40ed3dSBarry Smith   PetscFunctionReturn(0);
2698965ea79SLois Curfman McInnes }
2708965ea79SLois Curfman McInnes 
2714a2ae208SSatish Balay #undef __FUNCT__
2724a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIDense"
273dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode)
2748965ea79SLois Curfman McInnes {
27539ddd567SLois Curfman McInnes   Mat_MPIDense    *mdn=(Mat_MPIDense*)mat->data;
2766849ba73SBarry Smith   PetscErrorCode  ierr;
27713f74950SBarry Smith   PetscInt        i,*row,*col,flg,j,rstart,ncols;
27813f74950SBarry Smith   PetscMPIInt     n;
27987828ca2SBarry Smith   PetscScalar     *val;
280e0fa3b82SLois Curfman McInnes   InsertMode      addv=mat->insertmode;
2818965ea79SLois Curfman McInnes 
2823a40ed3dSBarry Smith   PetscFunctionBegin;
2838965ea79SLois Curfman McInnes   /*  wait on receives */
2847ef1d9bdSSatish Balay   while (1) {
2858798bf22SSatish Balay     ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
2867ef1d9bdSSatish Balay     if (!flg) break;
2878965ea79SLois Curfman McInnes 
2887ef1d9bdSSatish Balay     for (i=0; i<n;) {
2897ef1d9bdSSatish Balay       /* Now identify the consecutive vals belonging to the same row */
2907ef1d9bdSSatish Balay       for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
2917ef1d9bdSSatish Balay       if (j < n) ncols = j-i;
2927ef1d9bdSSatish Balay       else       ncols = n-i;
2937ef1d9bdSSatish Balay       /* Now assemble all these values with a single function call */
2947ef1d9bdSSatish Balay       ierr = MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
2957ef1d9bdSSatish Balay       i = j;
2968965ea79SLois Curfman McInnes     }
2977ef1d9bdSSatish Balay   }
2988798bf22SSatish Balay   ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
2998965ea79SLois Curfman McInnes 
30039ddd567SLois Curfman McInnes   ierr = MatAssemblyBegin(mdn->A,mode);CHKERRQ(ierr);
30139ddd567SLois Curfman McInnes   ierr = MatAssemblyEnd(mdn->A,mode);CHKERRQ(ierr);
3028965ea79SLois Curfman McInnes 
3036d4a8577SBarry Smith   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
30439ddd567SLois Curfman McInnes     ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr);
3058965ea79SLois Curfman McInnes   }
3063a40ed3dSBarry Smith   PetscFunctionReturn(0);
3078965ea79SLois Curfman McInnes }
3088965ea79SLois Curfman McInnes 
3094a2ae208SSatish Balay #undef __FUNCT__
3104a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIDense"
311dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIDense(Mat A)
3128965ea79SLois Curfman McInnes {
313dfbe8321SBarry Smith   PetscErrorCode ierr;
31439ddd567SLois Curfman McInnes   Mat_MPIDense   *l = (Mat_MPIDense*)A->data;
3153a40ed3dSBarry Smith 
3163a40ed3dSBarry Smith   PetscFunctionBegin;
3173a40ed3dSBarry Smith   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
3183a40ed3dSBarry Smith   PetscFunctionReturn(0);
3198965ea79SLois Curfman McInnes }
3208965ea79SLois Curfman McInnes 
3218965ea79SLois Curfman McInnes /* the code does not do the diagonal entries correctly unless the
3228965ea79SLois Curfman McInnes    matrix is square and the column and row owerships are identical.
3238965ea79SLois Curfman McInnes    This is a BUG. The only way to fix it seems to be to access
3243501a2bdSLois Curfman McInnes    mdn->A and mdn->B directly and not through the MatZeroRows()
3258965ea79SLois Curfman McInnes    routine.
3268965ea79SLois Curfman McInnes */
3274a2ae208SSatish Balay #undef __FUNCT__
3284a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIDense"
329f4df32b1SMatthew Knepley PetscErrorCode MatZeroRows_MPIDense(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag)
3308965ea79SLois Curfman McInnes {
33139ddd567SLois Curfman McInnes   Mat_MPIDense   *l = (Mat_MPIDense*)A->data;
3326849ba73SBarry Smith   PetscErrorCode ierr;
333899cda47SBarry Smith   PetscInt       i,*owners = A->rmap.range;
33413f74950SBarry Smith   PetscInt       *nprocs,j,idx,nsends;
33513f74950SBarry Smith   PetscInt       nmax,*svalues,*starts,*owner,nrecvs;
3367adad957SLisandro Dalcin   PetscInt       *rvalues,tag = ((PetscObject)A)->tag,count,base,slen,*source;
33713f74950SBarry Smith   PetscInt       *lens,*lrows,*values;
33813f74950SBarry Smith   PetscMPIInt    n,imdex,rank = l->rank,size = l->size;
3397adad957SLisandro Dalcin   MPI_Comm       comm = ((PetscObject)A)->comm;
3408965ea79SLois Curfman McInnes   MPI_Request    *send_waits,*recv_waits;
3418965ea79SLois Curfman McInnes   MPI_Status     recv_status,*send_status;
34235d8aa7fSBarry Smith   PetscTruth     found;
3438965ea79SLois Curfman McInnes 
3443a40ed3dSBarry Smith   PetscFunctionBegin;
3458965ea79SLois Curfman McInnes   /*  first count number of contributors to each processor */
34613f74950SBarry Smith   ierr  = PetscMalloc(2*size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr);
34713f74950SBarry Smith   ierr  = PetscMemzero(nprocs,2*size*sizeof(PetscInt));CHKERRQ(ierr);
34813f74950SBarry Smith   ierr  = PetscMalloc((N+1)*sizeof(PetscInt),&owner);CHKERRQ(ierr); /* see note*/
3498965ea79SLois Curfman McInnes   for (i=0; i<N; i++) {
3508965ea79SLois Curfman McInnes     idx = rows[i];
35135d8aa7fSBarry Smith     found = PETSC_FALSE;
3528965ea79SLois Curfman McInnes     for (j=0; j<size; j++) {
3538965ea79SLois Curfman McInnes       if (idx >= owners[j] && idx < owners[j+1]) {
354c1dc657dSBarry Smith         nprocs[2*j]++; nprocs[2*j+1] = 1; owner[i] = j; found = PETSC_TRUE; break;
3558965ea79SLois Curfman McInnes       }
3568965ea79SLois Curfman McInnes     }
35729bbc08cSBarry Smith     if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range");
3588965ea79SLois Curfman McInnes   }
359c1dc657dSBarry Smith   nsends = 0;  for (i=0; i<size; i++) { nsends += nprocs[2*i+1];}
3608965ea79SLois Curfman McInnes 
3618965ea79SLois Curfman McInnes   /* inform other processors of number of messages and max length*/
362c1dc657dSBarry Smith   ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr);
3638965ea79SLois Curfman McInnes 
3648965ea79SLois Curfman McInnes   /* post receives:   */
36513f74950SBarry Smith   ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(PetscInt),&rvalues);CHKERRQ(ierr);
366b0a32e0cSBarry Smith   ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr);
3678965ea79SLois Curfman McInnes   for (i=0; i<nrecvs; i++) {
36813f74950SBarry Smith     ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr);
3698965ea79SLois Curfman McInnes   }
3708965ea79SLois Curfman McInnes 
3718965ea79SLois Curfman McInnes   /* do sends:
3728965ea79SLois Curfman McInnes       1) starts[i] gives the starting index in svalues for stuff going to
3738965ea79SLois Curfman McInnes          the ith processor
3748965ea79SLois Curfman McInnes   */
37513f74950SBarry Smith   ierr = PetscMalloc((N+1)*sizeof(PetscInt),&svalues);CHKERRQ(ierr);
376b0a32e0cSBarry Smith   ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr);
37713f74950SBarry Smith   ierr = PetscMalloc((size+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr);
3788965ea79SLois Curfman McInnes   starts[0]  = 0;
379c1dc657dSBarry Smith   for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];}
3808965ea79SLois Curfman McInnes   for (i=0; i<N; i++) {
3818965ea79SLois Curfman McInnes     svalues[starts[owner[i]]++] = rows[i];
3828965ea79SLois Curfman McInnes   }
3838965ea79SLois Curfman McInnes 
3848965ea79SLois Curfman McInnes   starts[0] = 0;
385c1dc657dSBarry Smith   for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];}
3868965ea79SLois Curfman McInnes   count = 0;
3878965ea79SLois Curfman McInnes   for (i=0; i<size; i++) {
388c1dc657dSBarry Smith     if (nprocs[2*i+1]) {
38913f74950SBarry Smith       ierr = MPI_Isend(svalues+starts[i],nprocs[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr);
3908965ea79SLois Curfman McInnes     }
3918965ea79SLois Curfman McInnes   }
392606d414cSSatish Balay   ierr = PetscFree(starts);CHKERRQ(ierr);
3938965ea79SLois Curfman McInnes 
3948965ea79SLois Curfman McInnes   base = owners[rank];
3958965ea79SLois Curfman McInnes 
3968965ea79SLois Curfman McInnes   /*  wait on receives */
39713f74950SBarry Smith   ierr   = PetscMalloc(2*(nrecvs+1)*sizeof(PetscInt),&lens);CHKERRQ(ierr);
3988965ea79SLois Curfman McInnes   source = lens + nrecvs;
3998965ea79SLois Curfman McInnes   count  = nrecvs; slen = 0;
4008965ea79SLois Curfman McInnes   while (count) {
401ca161407SBarry Smith     ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr);
4028965ea79SLois Curfman McInnes     /* unpack receives into our local space */
40313f74950SBarry Smith     ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr);
4048965ea79SLois Curfman McInnes     source[imdex]  = recv_status.MPI_SOURCE;
4058965ea79SLois Curfman McInnes     lens[imdex]    = n;
4068965ea79SLois Curfman McInnes     slen += n;
4078965ea79SLois Curfman McInnes     count--;
4088965ea79SLois Curfman McInnes   }
409606d414cSSatish Balay   ierr = PetscFree(recv_waits);CHKERRQ(ierr);
4108965ea79SLois Curfman McInnes 
4118965ea79SLois Curfman McInnes   /* move the data into the send scatter */
41213f74950SBarry Smith   ierr = PetscMalloc((slen+1)*sizeof(PetscInt),&lrows);CHKERRQ(ierr);
4138965ea79SLois Curfman McInnes   count = 0;
4148965ea79SLois Curfman McInnes   for (i=0; i<nrecvs; i++) {
4158965ea79SLois Curfman McInnes     values = rvalues + i*nmax;
4168965ea79SLois Curfman McInnes     for (j=0; j<lens[i]; j++) {
4178965ea79SLois Curfman McInnes       lrows[count++] = values[j] - base;
4188965ea79SLois Curfman McInnes     }
4198965ea79SLois Curfman McInnes   }
420606d414cSSatish Balay   ierr = PetscFree(rvalues);CHKERRQ(ierr);
421606d414cSSatish Balay   ierr = PetscFree(lens);CHKERRQ(ierr);
422606d414cSSatish Balay   ierr = PetscFree(owner);CHKERRQ(ierr);
423606d414cSSatish Balay   ierr = PetscFree(nprocs);CHKERRQ(ierr);
4248965ea79SLois Curfman McInnes 
4258965ea79SLois Curfman McInnes   /* actually zap the local rows */
426f4df32b1SMatthew Knepley   ierr = MatZeroRows(l->A,slen,lrows,diag);CHKERRQ(ierr);
427606d414cSSatish Balay   ierr = PetscFree(lrows);CHKERRQ(ierr);
4288965ea79SLois Curfman McInnes 
4298965ea79SLois Curfman McInnes   /* wait on sends */
4308965ea79SLois Curfman McInnes   if (nsends) {
431b0a32e0cSBarry Smith     ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr);
432ca161407SBarry Smith     ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr);
433606d414cSSatish Balay     ierr = PetscFree(send_status);CHKERRQ(ierr);
4348965ea79SLois Curfman McInnes   }
435606d414cSSatish Balay   ierr = PetscFree(send_waits);CHKERRQ(ierr);
436606d414cSSatish Balay   ierr = PetscFree(svalues);CHKERRQ(ierr);
4378965ea79SLois Curfman McInnes 
4383a40ed3dSBarry Smith   PetscFunctionReturn(0);
4398965ea79SLois Curfman McInnes }
4408965ea79SLois Curfman McInnes 
4414a2ae208SSatish Balay #undef __FUNCT__
4424a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIDense"
443dfbe8321SBarry Smith PetscErrorCode MatMult_MPIDense(Mat mat,Vec xx,Vec yy)
4448965ea79SLois Curfman McInnes {
44539ddd567SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
446dfbe8321SBarry Smith   PetscErrorCode ierr;
447c456f294SBarry Smith 
4483a40ed3dSBarry Smith   PetscFunctionBegin;
449ca9f406cSSatish Balay   ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
450ca9f406cSSatish Balay   ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
45144cd7ae7SLois Curfman McInnes   ierr = MatMult_SeqDense(mdn->A,mdn->lvec,yy);CHKERRQ(ierr);
4523a40ed3dSBarry Smith   PetscFunctionReturn(0);
4538965ea79SLois Curfman McInnes }
4548965ea79SLois Curfman McInnes 
4554a2ae208SSatish Balay #undef __FUNCT__
4564a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIDense"
457dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz)
4588965ea79SLois Curfman McInnes {
45939ddd567SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
460dfbe8321SBarry Smith   PetscErrorCode ierr;
461c456f294SBarry Smith 
4623a40ed3dSBarry Smith   PetscFunctionBegin;
463ca9f406cSSatish Balay   ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
464ca9f406cSSatish Balay   ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
46544cd7ae7SLois Curfman McInnes   ierr = MatMultAdd_SeqDense(mdn->A,mdn->lvec,yy,zz);CHKERRQ(ierr);
4663a40ed3dSBarry Smith   PetscFunctionReturn(0);
4678965ea79SLois Curfman McInnes }
4688965ea79SLois Curfman McInnes 
4694a2ae208SSatish Balay #undef __FUNCT__
4704a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIDense"
471dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIDense(Mat A,Vec xx,Vec yy)
472096963f5SLois Curfman McInnes {
473096963f5SLois Curfman McInnes   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
474dfbe8321SBarry Smith   PetscErrorCode ierr;
47587828ca2SBarry Smith   PetscScalar    zero = 0.0;
476096963f5SLois Curfman McInnes 
4773a40ed3dSBarry Smith   PetscFunctionBegin;
4782dcb1b2aSMatthew Knepley   ierr = VecSet(yy,zero);CHKERRQ(ierr);
4797c922b88SBarry Smith   ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr);
480ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
481ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
4823a40ed3dSBarry Smith   PetscFunctionReturn(0);
483096963f5SLois Curfman McInnes }
484096963f5SLois Curfman McInnes 
4854a2ae208SSatish Balay #undef __FUNCT__
4864a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIDense"
487dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz)
488096963f5SLois Curfman McInnes {
489096963f5SLois Curfman McInnes   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
490dfbe8321SBarry Smith   PetscErrorCode ierr;
491096963f5SLois Curfman McInnes 
4923a40ed3dSBarry Smith   PetscFunctionBegin;
4933501a2bdSLois Curfman McInnes   ierr = VecCopy(yy,zz);CHKERRQ(ierr);
4947c922b88SBarry Smith   ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr);
495ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
496ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
4973a40ed3dSBarry Smith   PetscFunctionReturn(0);
498096963f5SLois Curfman McInnes }
499096963f5SLois Curfman McInnes 
5004a2ae208SSatish Balay #undef __FUNCT__
5014a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIDense"
502dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIDense(Mat A,Vec v)
5038965ea79SLois Curfman McInnes {
50439ddd567SLois Curfman McInnes   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
505096963f5SLois Curfman McInnes   Mat_SeqDense   *aloc = (Mat_SeqDense*)a->A->data;
506dfbe8321SBarry Smith   PetscErrorCode ierr;
507899cda47SBarry Smith   PetscInt       len,i,n,m = A->rmap.n,radd;
50887828ca2SBarry Smith   PetscScalar    *x,zero = 0.0;
509ed3cc1f0SBarry Smith 
5103a40ed3dSBarry Smith   PetscFunctionBegin;
5112dcb1b2aSMatthew Knepley   ierr = VecSet(v,zero);CHKERRQ(ierr);
5121ebc52fbSHong Zhang   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
513096963f5SLois Curfman McInnes   ierr = VecGetSize(v,&n);CHKERRQ(ierr);
514899cda47SBarry Smith   if (n != A->rmap.N) SETERRQ(PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec");
515899cda47SBarry Smith   len  = PetscMin(a->A->rmap.n,a->A->cmap.n);
516899cda47SBarry Smith   radd = A->rmap.rstart*m;
51744cd7ae7SLois Curfman McInnes   for (i=0; i<len; i++) {
518096963f5SLois Curfman McInnes     x[i] = aloc->v[radd + i*m + i];
519096963f5SLois Curfman McInnes   }
5201ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
5213a40ed3dSBarry Smith   PetscFunctionReturn(0);
5228965ea79SLois Curfman McInnes }
5238965ea79SLois Curfman McInnes 
5244a2ae208SSatish Balay #undef __FUNCT__
5254a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIDense"
526dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIDense(Mat mat)
5278965ea79SLois Curfman McInnes {
5283501a2bdSLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
529dfbe8321SBarry Smith   PetscErrorCode ierr;
53001b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK)
53101b82886SBarry Smith   Mat_Plapack   *lu=(Mat_Plapack*)(mat->spptr);
53201b82886SBarry Smith #endif
533ed3cc1f0SBarry Smith 
5343a40ed3dSBarry Smith   PetscFunctionBegin;
53594d884c6SBarry Smith 
536aa482453SBarry Smith #if defined(PETSC_USE_LOG)
537899cda47SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D, Cols=%D",mat->rmap.N,mat->cmap.N);
5388965ea79SLois Curfman McInnes #endif
5398798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
5403501a2bdSLois Curfman McInnes   ierr = MatDestroy(mdn->A);CHKERRQ(ierr);
54105b42c5fSBarry Smith   if (mdn->lvec)   {ierr = VecDestroy(mdn->lvec);CHKERRQ(ierr);}
54205b42c5fSBarry Smith   if (mdn->Mvctx)  {ierr = VecScatterDestroy(mdn->Mvctx);CHKERRQ(ierr);}
54301b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK)
54401b82886SBarry Smith   if (lu->CleanUpPlapack) {
54562b4c0b3SBarry Smith     ierr = PLA_Obj_free(&lu->A);CHKERRQ(ierr);
54662b4c0b3SBarry Smith     ierr = PLA_Obj_free (&lu->pivots);CHKERRQ(ierr);
54762b4c0b3SBarry Smith     ierr = PLA_Temp_free(&lu->templ);CHKERRQ(ierr);
54809d27a7eSBarry Smith 
54901b82886SBarry Smith 
55001b82886SBarry Smith     ierr = ISDestroy(lu->is_pla);CHKERRQ(ierr);
55101b82886SBarry Smith     ierr = ISDestroy(lu->is_petsc);CHKERRQ(ierr);
55201b82886SBarry Smith     ierr = VecScatterDestroy(lu->ctx);CHKERRQ(ierr);
553622d7880SLois Curfman McInnes   }
55401b82886SBarry Smith #endif
55501b82886SBarry Smith 
556606d414cSSatish Balay   ierr = PetscFree(mdn);CHKERRQ(ierr);
557dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
558901853e0SKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr);
559901853e0SKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMPIDenseSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
5604ae313f4SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMult_mpiaij_mpidense_C","",PETSC_NULL);CHKERRQ(ierr);
5614ae313f4SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C","",PETSC_NULL);CHKERRQ(ierr);
5624ae313f4SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C","",PETSC_NULL);CHKERRQ(ierr);
5633a40ed3dSBarry Smith   PetscFunctionReturn(0);
5648965ea79SLois Curfman McInnes }
56539ddd567SLois Curfman McInnes 
5664a2ae208SSatish Balay #undef __FUNCT__
5674a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense_Binary"
5686849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_Binary(Mat mat,PetscViewer viewer)
5698965ea79SLois Curfman McInnes {
57039ddd567SLois Curfman McInnes   Mat_MPIDense      *mdn = (Mat_MPIDense*)mat->data;
571dfbe8321SBarry Smith   PetscErrorCode    ierr;
572aa05aa95SBarry Smith   PetscViewerFormat format;
573aa05aa95SBarry Smith   int               fd;
574aa05aa95SBarry Smith   PetscInt          header[4],mmax,N = mat->cmap.N,i,j,m,k;
575aa05aa95SBarry Smith   PetscMPIInt       rank,tag  = ((PetscObject)viewer)->tag,size;
576578230a0SSatish Balay   PetscScalar       *work,*v,*vv;
577aa05aa95SBarry Smith   Mat_SeqDense      *a = (Mat_SeqDense*)mdn->A->data;
578aa05aa95SBarry Smith   MPI_Status        status;
5797056b6fcSBarry Smith 
5803a40ed3dSBarry Smith   PetscFunctionBegin;
58139ddd567SLois Curfman McInnes   if (mdn->size == 1) {
58239ddd567SLois Curfman McInnes     ierr = MatView(mdn->A,viewer);CHKERRQ(ierr);
583aa05aa95SBarry Smith   } else {
584aa05aa95SBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
5857adad957SLisandro Dalcin     ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr);
5867adad957SLisandro Dalcin     ierr = MPI_Comm_size(((PetscObject)mat)->comm,&size);CHKERRQ(ierr);
587aa05aa95SBarry Smith 
588aa05aa95SBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
589aa05aa95SBarry Smith     if (format == PETSC_VIEWER_BINARY_NATIVE) {
590aa05aa95SBarry Smith 
591aa05aa95SBarry Smith       if (!rank) {
592aa05aa95SBarry Smith 	/* store the matrix as a dense matrix */
593aa05aa95SBarry Smith 	header[0] = MAT_FILE_COOKIE;
594aa05aa95SBarry Smith 	header[1] = mat->rmap.N;
595aa05aa95SBarry Smith 	header[2] = N;
596aa05aa95SBarry Smith 	header[3] = MATRIX_BINARY_FORMAT_DENSE;
597aa05aa95SBarry Smith 	ierr = PetscBinaryWrite(fd,header,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
598aa05aa95SBarry Smith 
599aa05aa95SBarry Smith 	/* get largest work array needed for transposing array */
600aa05aa95SBarry Smith         mmax = mat->rmap.n;
601aa05aa95SBarry Smith         for (i=1; i<size; i++) {
602aa05aa95SBarry Smith           mmax = PetscMax(mmax,mat->rmap.range[i+1] - mat->rmap.range[i]);
6038965ea79SLois Curfman McInnes         }
604aa05aa95SBarry Smith 	ierr = PetscMalloc(mmax*N*sizeof(PetscScalar),&work);CHKERRQ(ierr);
605aa05aa95SBarry Smith 
606aa05aa95SBarry Smith 	/* write out local array, by rows */
607aa05aa95SBarry Smith         m    = mat->rmap.n;
608aa05aa95SBarry Smith 	v    = a->v;
609aa05aa95SBarry Smith         for (j=0; j<N; j++) {
610aa05aa95SBarry Smith           for (i=0; i<m; i++) {
611578230a0SSatish Balay 	    work[j + i*N] = *v++;
612aa05aa95SBarry Smith 	  }
613aa05aa95SBarry Smith 	}
614aa05aa95SBarry Smith 	ierr = PetscBinaryWrite(fd,work,m*N,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr);
615aa05aa95SBarry Smith         /* get largest work array to receive messages from other processes, excludes process zero */
616aa05aa95SBarry Smith         mmax = 0;
617aa05aa95SBarry Smith         for (i=1; i<size; i++) {
618aa05aa95SBarry Smith           mmax = PetscMax(mmax,mat->rmap.range[i+1] - mat->rmap.range[i]);
619aa05aa95SBarry Smith         }
620578230a0SSatish Balay 	ierr = PetscMalloc(mmax*N*sizeof(PetscScalar),&vv);CHKERRQ(ierr);
621578230a0SSatish Balay         v = vv;
622aa05aa95SBarry Smith         for (k=1; k<size; k++) {
623aa05aa95SBarry Smith           m    = mat->rmap.range[k+1] - mat->rmap.range[k];
6247adad957SLisandro Dalcin           ierr = MPI_Recv(v,m*N,MPIU_SCALAR,k,tag,((PetscObject)mat)->comm,&status);CHKERRQ(ierr);
625aa05aa95SBarry Smith 
626aa05aa95SBarry Smith           for (j=0; j<N; j++) {
627aa05aa95SBarry Smith             for (i=0; i<m; i++) {
628578230a0SSatish Balay               work[j + i*N] = *v++;
629aa05aa95SBarry Smith 	    }
630aa05aa95SBarry Smith 	  }
631aa05aa95SBarry Smith 	  ierr = PetscBinaryWrite(fd,work,m*N,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr);
632aa05aa95SBarry Smith         }
633aa05aa95SBarry Smith         ierr = PetscFree(work);CHKERRQ(ierr);
634578230a0SSatish Balay         ierr = PetscFree(vv);CHKERRQ(ierr);
635aa05aa95SBarry Smith       } else {
6367adad957SLisandro Dalcin         ierr = MPI_Send(a->v,mat->rmap.n*mat->cmap.N,MPIU_SCALAR,0,tag,((PetscObject)mat)->comm);CHKERRQ(ierr);
637aa05aa95SBarry Smith       }
638aa05aa95SBarry Smith     }
639aa05aa95SBarry Smith   }
6403a40ed3dSBarry Smith   PetscFunctionReturn(0);
6418965ea79SLois Curfman McInnes }
6428965ea79SLois Curfman McInnes 
6434a2ae208SSatish Balay #undef __FUNCT__
6444a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense_ASCIIorDraworSocket"
6456849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
6468965ea79SLois Curfman McInnes {
64739ddd567SLois Curfman McInnes   Mat_MPIDense      *mdn = (Mat_MPIDense*)mat->data;
648dfbe8321SBarry Smith   PetscErrorCode    ierr;
64932dcc486SBarry Smith   PetscMPIInt       size = mdn->size,rank = mdn->rank;
650b0a32e0cSBarry Smith   PetscViewerType   vtype;
65132077d6dSBarry Smith   PetscTruth        iascii,isdraw;
652b0a32e0cSBarry Smith   PetscViewer       sviewer;
653f3ef73ceSBarry Smith   PetscViewerFormat format;
65401b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK)
65501b82886SBarry Smith   Mat_Plapack       *lu=(Mat_Plapack*)(mat->spptr);
65601b82886SBarry Smith #endif
6578965ea79SLois Curfman McInnes 
6583a40ed3dSBarry Smith   PetscFunctionBegin;
65932077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
660fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
66132077d6dSBarry Smith   if (iascii) {
662b0a32e0cSBarry Smith     ierr = PetscViewerGetType(viewer,&vtype);CHKERRQ(ierr);
663b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
664456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
6654e220ebcSLois Curfman McInnes       MatInfo info;
666888f2ed8SSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
667899cda47SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"  [%d] local rows %D nz %D nz alloced %D mem %D \n",rank,mat->rmap.n,
66877431f27SBarry Smith                    (PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory);CHKERRQ(ierr);
669b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
6703501a2bdSLois Curfman McInnes       ierr = VecScatterView(mdn->Mvctx,viewer);CHKERRQ(ierr);
67101b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK)
67201b82886SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"PLAPACK run parameters:\n");CHKERRQ(ierr);
673*04fea9ffSBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  Processor mesh: nprows %d, npcols %d\n",Plapack_nprows, Plapack_npcols);CHKERRQ(ierr);
67401b82886SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  Distr. block size nb: %d \n",lu->nb);CHKERRQ(ierr);
67501b82886SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  Error checking: %d\n",lu->ierror);CHKERRQ(ierr);
67601b82886SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  Algorithmic block size: %d\n",lu->nb_alg);CHKERRQ(ierr);
67701b82886SBarry Smith #endif
6783a40ed3dSBarry Smith       PetscFunctionReturn(0);
679fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
6803a40ed3dSBarry Smith       PetscFunctionReturn(0);
6818965ea79SLois Curfman McInnes     }
682f1af5d2fSBarry Smith   } else if (isdraw) {
683b0a32e0cSBarry Smith     PetscDraw  draw;
684f1af5d2fSBarry Smith     PetscTruth isnull;
685f1af5d2fSBarry Smith 
686b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
687b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr);
688f1af5d2fSBarry Smith     if (isnull) PetscFunctionReturn(0);
689f1af5d2fSBarry Smith   }
69077ed5343SBarry Smith 
6918965ea79SLois Curfman McInnes   if (size == 1) {
69239ddd567SLois Curfman McInnes     ierr = MatView(mdn->A,viewer);CHKERRQ(ierr);
6933a40ed3dSBarry Smith   } else {
6948965ea79SLois Curfman McInnes     /* assemble the entire matrix onto first processor. */
6958965ea79SLois Curfman McInnes     Mat         A;
696899cda47SBarry Smith     PetscInt    M = mat->rmap.N,N = mat->cmap.N,m,row,i,nz;
697ba8c8a56SBarry Smith     PetscInt    *cols;
698ba8c8a56SBarry Smith     PetscScalar *vals;
6998965ea79SLois Curfman McInnes 
7007adad957SLisandro Dalcin     ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr);
7018965ea79SLois Curfman McInnes     if (!rank) {
702f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
7033a40ed3dSBarry Smith     } else {
704f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
7058965ea79SLois Curfman McInnes     }
7067adad957SLisandro Dalcin     /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */
707878740d9SKris Buschelman     ierr = MatSetType(A,MATMPIDENSE);CHKERRQ(ierr);
708878740d9SKris Buschelman     ierr = MatMPIDenseSetPreallocation(A,PETSC_NULL);
70952e6d16bSBarry Smith     ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr);
7108965ea79SLois Curfman McInnes 
71139ddd567SLois Curfman McInnes     /* Copy the matrix ... This isn't the most efficient means,
71239ddd567SLois Curfman McInnes        but it's quick for now */
71351022da4SBarry Smith     A->insertmode = INSERT_VALUES;
714899cda47SBarry Smith     row = mat->rmap.rstart; m = mdn->A->rmap.n;
7158965ea79SLois Curfman McInnes     for (i=0; i<m; i++) {
716ba8c8a56SBarry Smith       ierr = MatGetRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr);
717ba8c8a56SBarry Smith       ierr = MatSetValues_MPIDense(A,1,&row,nz,cols,vals,INSERT_VALUES);CHKERRQ(ierr);
718ba8c8a56SBarry Smith       ierr = MatRestoreRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr);
71939ddd567SLois Curfman McInnes       row++;
7208965ea79SLois Curfman McInnes     }
7218965ea79SLois Curfman McInnes 
7226d4a8577SBarry Smith     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
7236d4a8577SBarry Smith     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
724b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
725b9b97703SBarry Smith     if (!rank) {
7266831982aSBarry Smith       ierr = MatView(((Mat_MPIDense*)(A->data))->A,sviewer);CHKERRQ(ierr);
7278965ea79SLois Curfman McInnes     }
728b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
729b0a32e0cSBarry Smith     ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
7308965ea79SLois Curfman McInnes     ierr = MatDestroy(A);CHKERRQ(ierr);
7318965ea79SLois Curfman McInnes   }
7323a40ed3dSBarry Smith   PetscFunctionReturn(0);
7338965ea79SLois Curfman McInnes }
7348965ea79SLois Curfman McInnes 
7354a2ae208SSatish Balay #undef __FUNCT__
7364a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense"
737dfbe8321SBarry Smith PetscErrorCode MatView_MPIDense(Mat mat,PetscViewer viewer)
7388965ea79SLois Curfman McInnes {
739dfbe8321SBarry Smith   PetscErrorCode ierr;
74032077d6dSBarry Smith   PetscTruth     iascii,isbinary,isdraw,issocket;
7418965ea79SLois Curfman McInnes 
742433994e6SBarry Smith   PetscFunctionBegin;
7430f5bd95cSBarry Smith 
74432077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
745fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
746b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr);
747fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
7480f5bd95cSBarry Smith 
74932077d6dSBarry Smith   if (iascii || issocket || isdraw) {
750f1af5d2fSBarry Smith     ierr = MatView_MPIDense_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
7510f5bd95cSBarry Smith   } else if (isbinary) {
7523a40ed3dSBarry Smith     ierr = MatView_MPIDense_Binary(mat,viewer);CHKERRQ(ierr);
7535cd90555SBarry Smith   } else {
754958c9bccSBarry Smith     SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPI dense matrix",((PetscObject)viewer)->type_name);
7558965ea79SLois Curfman McInnes   }
7563a40ed3dSBarry Smith   PetscFunctionReturn(0);
7578965ea79SLois Curfman McInnes }
7588965ea79SLois Curfman McInnes 
7594a2ae208SSatish Balay #undef __FUNCT__
7604a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIDense"
761dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info)
7628965ea79SLois Curfman McInnes {
7633501a2bdSLois Curfman McInnes   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
7643501a2bdSLois Curfman McInnes   Mat            mdn = mat->A;
765dfbe8321SBarry Smith   PetscErrorCode ierr;
766329f5518SBarry Smith   PetscReal      isend[5],irecv[5];
7678965ea79SLois Curfman McInnes 
7683a40ed3dSBarry Smith   PetscFunctionBegin;
769899cda47SBarry Smith   info->rows_global    = (double)A->rmap.N;
770899cda47SBarry Smith   info->columns_global = (double)A->cmap.N;
771899cda47SBarry Smith   info->rows_local     = (double)A->rmap.n;
772899cda47SBarry Smith   info->columns_local  = (double)A->cmap.N;
7734e220ebcSLois Curfman McInnes   info->block_size     = 1.0;
7744e220ebcSLois Curfman McInnes   ierr = MatGetInfo(mdn,MAT_LOCAL,info);CHKERRQ(ierr);
7754e220ebcSLois Curfman McInnes   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
7764e220ebcSLois Curfman McInnes   isend[3] = info->memory;  isend[4] = info->mallocs;
7778965ea79SLois Curfman McInnes   if (flag == MAT_LOCAL) {
7784e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
7794e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
7804e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
7814e220ebcSLois Curfman McInnes     info->memory       = isend[3];
7824e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
7838965ea79SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_MAX) {
7847adad957SLisandro Dalcin     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,((PetscObject)A)->comm);CHKERRQ(ierr);
7854e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
7864e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
7874e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
7884e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
7894e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
7908965ea79SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_SUM) {
7917adad957SLisandro Dalcin     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,((PetscObject)A)->comm);CHKERRQ(ierr);
7924e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
7934e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
7944e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
7954e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
7964e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
7978965ea79SLois Curfman McInnes   }
7984e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
7994e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
8004e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
8013a40ed3dSBarry Smith   PetscFunctionReturn(0);
8028965ea79SLois Curfman McInnes }
8038965ea79SLois Curfman McInnes 
8044a2ae208SSatish Balay #undef __FUNCT__
8054a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIDense"
8064e0d8c25SBarry Smith PetscErrorCode MatSetOption_MPIDense(Mat A,MatOption op,PetscTruth flg)
8078965ea79SLois Curfman McInnes {
80839ddd567SLois Curfman McInnes   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
809dfbe8321SBarry Smith   PetscErrorCode ierr;
8108965ea79SLois Curfman McInnes 
8113a40ed3dSBarry Smith   PetscFunctionBegin;
81212c028f9SKris Buschelman   switch (op) {
813512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
81412c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
81512c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
8164e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
81712c028f9SKris Buschelman     break;
81812c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
8194e0d8c25SBarry Smith     a->roworiented = flg;
8204e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
82112c028f9SKris Buschelman     break;
8224e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
82312c028f9SKris Buschelman   case MAT_USE_HASH_TABLE:
824290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
82512c028f9SKris Buschelman     break;
82612c028f9SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
8274e0d8c25SBarry Smith     a->donotstash = flg;
82812c028f9SKris Buschelman     break;
82977e54ba9SKris Buschelman   case MAT_SYMMETRIC:
83077e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
8319a4540c5SBarry Smith   case MAT_HERMITIAN:
8329a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
833600fe468SBarry Smith   case MAT_IGNORE_LOWER_TRIANGULAR:
834290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
83577e54ba9SKris Buschelman     break;
83612c028f9SKris Buschelman   default:
837600fe468SBarry Smith     SETERRQ1(PETSC_ERR_SUP,"unknown option %s",MatOptions[op]);
8383a40ed3dSBarry Smith   }
8393a40ed3dSBarry Smith   PetscFunctionReturn(0);
8408965ea79SLois Curfman McInnes }
8418965ea79SLois Curfman McInnes 
8428965ea79SLois Curfman McInnes 
8434a2ae208SSatish Balay #undef __FUNCT__
8444a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIDense"
845dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIDense(Mat A,Vec ll,Vec rr)
8465b2fa520SLois Curfman McInnes {
8475b2fa520SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)A->data;
8485b2fa520SLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)mdn->A->data;
84987828ca2SBarry Smith   PetscScalar    *l,*r,x,*v;
850dfbe8321SBarry Smith   PetscErrorCode ierr;
851899cda47SBarry Smith   PetscInt       i,j,s2a,s3a,s2,s3,m=mdn->A->rmap.n,n=mdn->A->cmap.n;
8525b2fa520SLois Curfman McInnes 
8535b2fa520SLois Curfman McInnes   PetscFunctionBegin;
85472d926a5SLois Curfman McInnes   ierr = MatGetLocalSize(A,&s2,&s3);CHKERRQ(ierr);
8555b2fa520SLois Curfman McInnes   if (ll) {
85672d926a5SLois Curfman McInnes     ierr = VecGetLocalSize(ll,&s2a);CHKERRQ(ierr);
857175be7b4SMatthew Knepley     if (s2a != s2) SETERRQ2(PETSC_ERR_ARG_SIZ,"Left scaling vector non-conforming local size, %d != %d.", s2a, s2);
8581ebc52fbSHong Zhang     ierr = VecGetArray(ll,&l);CHKERRQ(ierr);
8595b2fa520SLois Curfman McInnes     for (i=0; i<m; i++) {
8605b2fa520SLois Curfman McInnes       x = l[i];
8615b2fa520SLois Curfman McInnes       v = mat->v + i;
8625b2fa520SLois Curfman McInnes       for (j=0; j<n; j++) { (*v) *= x; v+= m;}
8635b2fa520SLois Curfman McInnes     }
8641ebc52fbSHong Zhang     ierr = VecRestoreArray(ll,&l);CHKERRQ(ierr);
865efee365bSSatish Balay     ierr = PetscLogFlops(n*m);CHKERRQ(ierr);
8665b2fa520SLois Curfman McInnes   }
8675b2fa520SLois Curfman McInnes   if (rr) {
868175be7b4SMatthew Knepley     ierr = VecGetLocalSize(rr,&s3a);CHKERRQ(ierr);
869175be7b4SMatthew Knepley     if (s3a != s3) SETERRQ2(PETSC_ERR_ARG_SIZ,"Right scaling vec non-conforming local size, %d != %d.", s3a, s3);
870ca9f406cSSatish Balay     ierr = VecScatterBegin(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
871ca9f406cSSatish Balay     ierr = VecScatterEnd(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
8721ebc52fbSHong Zhang     ierr = VecGetArray(mdn->lvec,&r);CHKERRQ(ierr);
8735b2fa520SLois Curfman McInnes     for (i=0; i<n; i++) {
8745b2fa520SLois Curfman McInnes       x = r[i];
8755b2fa520SLois Curfman McInnes       v = mat->v + i*m;
8765b2fa520SLois Curfman McInnes       for (j=0; j<m; j++) { (*v++) *= x;}
8775b2fa520SLois Curfman McInnes     }
8781ebc52fbSHong Zhang     ierr = VecRestoreArray(mdn->lvec,&r);CHKERRQ(ierr);
879efee365bSSatish Balay     ierr = PetscLogFlops(n*m);CHKERRQ(ierr);
8805b2fa520SLois Curfman McInnes   }
8815b2fa520SLois Curfman McInnes   PetscFunctionReturn(0);
8825b2fa520SLois Curfman McInnes }
8835b2fa520SLois Curfman McInnes 
8844a2ae208SSatish Balay #undef __FUNCT__
8854a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIDense"
886dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIDense(Mat A,NormType type,PetscReal *nrm)
887096963f5SLois Curfman McInnes {
8883501a2bdSLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)A->data;
8893501a2bdSLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)mdn->A->data;
890dfbe8321SBarry Smith   PetscErrorCode ierr;
89113f74950SBarry Smith   PetscInt       i,j;
892329f5518SBarry Smith   PetscReal      sum = 0.0;
89387828ca2SBarry Smith   PetscScalar    *v = mat->v;
8943501a2bdSLois Curfman McInnes 
8953a40ed3dSBarry Smith   PetscFunctionBegin;
8963501a2bdSLois Curfman McInnes   if (mdn->size == 1) {
897064f8208SBarry Smith     ierr =  MatNorm(mdn->A,type,nrm);CHKERRQ(ierr);
8983501a2bdSLois Curfman McInnes   } else {
8993501a2bdSLois Curfman McInnes     if (type == NORM_FROBENIUS) {
900899cda47SBarry Smith       for (i=0; i<mdn->A->cmap.n*mdn->A->rmap.n; i++) {
901aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
902329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
9033501a2bdSLois Curfman McInnes #else
9043501a2bdSLois Curfman McInnes         sum += (*v)*(*v); v++;
9053501a2bdSLois Curfman McInnes #endif
9063501a2bdSLois Curfman McInnes       }
9077adad957SLisandro Dalcin       ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_SUM,((PetscObject)A)->comm);CHKERRQ(ierr);
908064f8208SBarry Smith       *nrm = sqrt(*nrm);
909899cda47SBarry Smith       ierr = PetscLogFlops(2*mdn->A->cmap.n*mdn->A->rmap.n);CHKERRQ(ierr);
9103a40ed3dSBarry Smith     } else if (type == NORM_1) {
911329f5518SBarry Smith       PetscReal *tmp,*tmp2;
912899cda47SBarry Smith       ierr = PetscMalloc(2*A->cmap.N*sizeof(PetscReal),&tmp);CHKERRQ(ierr);
913899cda47SBarry Smith       tmp2 = tmp + A->cmap.N;
914899cda47SBarry Smith       ierr = PetscMemzero(tmp,2*A->cmap.N*sizeof(PetscReal));CHKERRQ(ierr);
915064f8208SBarry Smith       *nrm = 0.0;
9163501a2bdSLois Curfman McInnes       v = mat->v;
917899cda47SBarry Smith       for (j=0; j<mdn->A->cmap.n; j++) {
918899cda47SBarry Smith         for (i=0; i<mdn->A->rmap.n; i++) {
91967e560aaSBarry Smith           tmp[j] += PetscAbsScalar(*v);  v++;
9203501a2bdSLois Curfman McInnes         }
9213501a2bdSLois Curfman McInnes       }
9227adad957SLisandro Dalcin       ierr = MPI_Allreduce(tmp,tmp2,A->cmap.N,MPIU_REAL,MPI_SUM,((PetscObject)A)->comm);CHKERRQ(ierr);
923899cda47SBarry Smith       for (j=0; j<A->cmap.N; j++) {
924064f8208SBarry Smith         if (tmp2[j] > *nrm) *nrm = tmp2[j];
9253501a2bdSLois Curfman McInnes       }
926606d414cSSatish Balay       ierr = PetscFree(tmp);CHKERRQ(ierr);
927899cda47SBarry Smith       ierr = PetscLogFlops(A->cmap.n*A->rmap.n);CHKERRQ(ierr);
9283a40ed3dSBarry Smith     } else if (type == NORM_INFINITY) { /* max row norm */
929329f5518SBarry Smith       PetscReal ntemp;
9303501a2bdSLois Curfman McInnes       ierr = MatNorm(mdn->A,type,&ntemp);CHKERRQ(ierr);
9317adad957SLisandro Dalcin       ierr = MPI_Allreduce(&ntemp,nrm,1,MPIU_REAL,MPI_MAX,((PetscObject)A)->comm);CHKERRQ(ierr);
9323a40ed3dSBarry Smith     } else {
93329bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"No support for two norm");
9343501a2bdSLois Curfman McInnes     }
9353501a2bdSLois Curfman McInnes   }
9363a40ed3dSBarry Smith   PetscFunctionReturn(0);
9373501a2bdSLois Curfman McInnes }
9383501a2bdSLois Curfman McInnes 
9394a2ae208SSatish Balay #undef __FUNCT__
9404a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPIDense"
941fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIDense(Mat A,MatReuse reuse,Mat *matout)
9423501a2bdSLois Curfman McInnes {
9433501a2bdSLois Curfman McInnes   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
9443501a2bdSLois Curfman McInnes   Mat_SeqDense   *Aloc = (Mat_SeqDense*)a->A->data;
9453501a2bdSLois Curfman McInnes   Mat            B;
946899cda47SBarry Smith   PetscInt       M = A->rmap.N,N = A->cmap.N,m,n,*rwork,rstart = A->rmap.rstart;
9476849ba73SBarry Smith   PetscErrorCode ierr;
94813f74950SBarry Smith   PetscInt       j,i;
94987828ca2SBarry Smith   PetscScalar    *v;
9503501a2bdSLois Curfman McInnes 
9513a40ed3dSBarry Smith   PetscFunctionBegin;
952fc4dec0aSBarry Smith   if (A == *matout && M != N) {
95329bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"Supports square matrix only in-place");
9547056b6fcSBarry Smith   }
955fc4dec0aSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || A == *matout) {
9567adad957SLisandro Dalcin     ierr = MatCreate(((PetscObject)A)->comm,&B);CHKERRQ(ierr);
957f69a0ea3SMatthew Knepley     ierr = MatSetSizes(B,PETSC_DECIDE,PETSC_DECIDE,N,M);CHKERRQ(ierr);
9587adad957SLisandro Dalcin     ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr);
959878740d9SKris Buschelman     ierr = MatMPIDenseSetPreallocation(B,PETSC_NULL);CHKERRQ(ierr);
960fc4dec0aSBarry Smith   } else {
961fc4dec0aSBarry Smith     B = *matout;
962fc4dec0aSBarry Smith   }
9633501a2bdSLois Curfman McInnes 
964899cda47SBarry Smith   m = a->A->rmap.n; n = a->A->cmap.n; v = Aloc->v;
9651acff37aSSatish Balay   ierr = PetscMalloc(m*sizeof(PetscInt),&rwork);CHKERRQ(ierr);
9663501a2bdSLois Curfman McInnes   for (i=0; i<m; i++) rwork[i] = rstart + i;
9671acff37aSSatish Balay   for (j=0; j<n; j++) {
9683501a2bdSLois Curfman McInnes     ierr = MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES);CHKERRQ(ierr);
9693501a2bdSLois Curfman McInnes     v   += m;
9703501a2bdSLois Curfman McInnes   }
971606d414cSSatish Balay   ierr = PetscFree(rwork);CHKERRQ(ierr);
9726d4a8577SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
9736d4a8577SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
974fc4dec0aSBarry Smith   if (*matout != A) {
9753501a2bdSLois Curfman McInnes     *matout = B;
9763501a2bdSLois Curfman McInnes   } else {
977273d9f13SBarry Smith     ierr = MatHeaderCopy(A,B);CHKERRQ(ierr);
9783501a2bdSLois Curfman McInnes   }
9793a40ed3dSBarry Smith   PetscFunctionReturn(0);
980096963f5SLois Curfman McInnes }
981096963f5SLois Curfman McInnes 
982d9eff348SSatish Balay #include "petscblaslapack.h"
9834a2ae208SSatish Balay #undef __FUNCT__
9844a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIDense"
985f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIDense(Mat inA,PetscScalar alpha)
98644cd7ae7SLois Curfman McInnes {
98744cd7ae7SLois Curfman McInnes   Mat_MPIDense   *A = (Mat_MPIDense*)inA->data;
98844cd7ae7SLois Curfman McInnes   Mat_SeqDense   *a = (Mat_SeqDense*)A->A->data;
989f4df32b1SMatthew Knepley   PetscScalar    oalpha = alpha;
990efee365bSSatish Balay   PetscErrorCode ierr;
9910805154bSBarry Smith   PetscBLASInt   one = 1,nz = PetscBLASIntCast(inA->rmap.n*inA->cmap.N);
99244cd7ae7SLois Curfman McInnes 
9933a40ed3dSBarry Smith   PetscFunctionBegin;
994f4df32b1SMatthew Knepley   BLASscal_(&nz,&oalpha,a->v,&one);
995efee365bSSatish Balay   ierr = PetscLogFlops(nz);CHKERRQ(ierr);
9963a40ed3dSBarry Smith   PetscFunctionReturn(0);
99744cd7ae7SLois Curfman McInnes }
99844cd7ae7SLois Curfman McInnes 
9996849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat *);
10008965ea79SLois Curfman McInnes 
10014a2ae208SSatish Balay #undef __FUNCT__
10024a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPIDense"
1003dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPIDense(Mat A)
1004273d9f13SBarry Smith {
1005dfbe8321SBarry Smith   PetscErrorCode ierr;
1006273d9f13SBarry Smith 
1007273d9f13SBarry Smith   PetscFunctionBegin;
1008273d9f13SBarry Smith   ierr =  MatMPIDenseSetPreallocation(A,0);CHKERRQ(ierr);
1009273d9f13SBarry Smith   PetscFunctionReturn(0);
1010273d9f13SBarry Smith }
1011273d9f13SBarry Smith 
10124ae313f4SHong Zhang #undef __FUNCT__
10134ae313f4SHong Zhang #define __FUNCT__ "MatMatMultSymbolic_MPIDense_MPIDense"
10144ae313f4SHong Zhang PetscErrorCode MatMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat *C)
10154ae313f4SHong Zhang {
10164ae313f4SHong Zhang   PetscErrorCode ierr;
10174ae313f4SHong Zhang   PetscInt       m=A->rmap.n,n=B->cmap.n;
10184ae313f4SHong Zhang   Mat            Cmat;
10194ae313f4SHong Zhang 
10204ae313f4SHong Zhang   PetscFunctionBegin;
10214ae313f4SHong Zhang   if (A->cmap.n != B->rmap.n) SETERRQ2(PETSC_ERR_ARG_SIZ,"A->cmap.n %d != B->rmap.n %d\n",A->cmap.n,B->rmap.n);
10227adad957SLisandro Dalcin   ierr = MatCreate(((PetscObject)B)->comm,&Cmat);CHKERRQ(ierr);
10234ae313f4SHong Zhang   ierr = MatSetSizes(Cmat,m,n,A->rmap.N,B->cmap.N);CHKERRQ(ierr);
10244ae313f4SHong Zhang   ierr = MatSetType(Cmat,MATMPIDENSE);CHKERRQ(ierr);
10254ae313f4SHong Zhang   ierr = MatMPIDenseSetPreallocation(Cmat,PETSC_NULL);CHKERRQ(ierr);
10262a6744ebSBarry Smith   ierr = MatAssemblyBegin(Cmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
10270a71e23eSMatthew Knepley   ierr = MatAssemblyEnd(Cmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
10284ae313f4SHong Zhang   *C = Cmat;
10294ae313f4SHong Zhang   PetscFunctionReturn(0);
10304ae313f4SHong Zhang }
10314ae313f4SHong Zhang 
103201b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK)
103301b82886SBarry Smith #undef __FUNCT__
103401b82886SBarry Smith #define __FUNCT__ "MatSolve_MPIDense"
103501b82886SBarry Smith PetscErrorCode MatSolve_MPIDense(Mat A,Vec b,Vec x)
103601b82886SBarry Smith {
1037*04fea9ffSBarry Smith   MPI_Comm       comm = ((PetscObject)A)->comm,dummy_comm;
103801b82886SBarry Smith   Mat_Plapack    *lu = (Mat_Plapack*)A->spptr;
103901b82886SBarry Smith   PetscErrorCode ierr;
104001b82886SBarry Smith   PetscInt       M=A->rmap.N,m=A->rmap.n,rstart,i,j,*idx_pla,*idx_petsc,loc_m,loc_stride;
104101b82886SBarry Smith   PetscScalar    *array;
104201b82886SBarry Smith   PetscReal      one = 1.0;
104301b82886SBarry Smith   PetscMPIInt    size,rank,r_rank,r_nproc,c_rank,c_nproc;;
104401b82886SBarry Smith   PLA_Obj        v_pla = NULL;
104501b82886SBarry Smith   PetscScalar    *loc_buf;
104601b82886SBarry Smith   Vec            loc_x;
104701b82886SBarry Smith 
104801b82886SBarry Smith   PetscFunctionBegin;
104901b82886SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
105001b82886SBarry Smith   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
105101b82886SBarry Smith 
105201b82886SBarry Smith   /* Create PLAPACK vector objects, then copy b into PLAPACK b */
105362b4c0b3SBarry Smith   ierr = PLA_Mvector_create(lu->datatype,M,1,lu->templ,PLA_ALIGN_FIRST,&v_pla);CHKERRQ(ierr);
105462b4c0b3SBarry Smith   ierr = PLA_Obj_set_to_zero(v_pla);CHKERRQ(ierr);
105501b82886SBarry Smith 
105601b82886SBarry Smith   /* Copy b into rhs_pla */
105762b4c0b3SBarry Smith   ierr = PLA_API_begin();CHKERRQ(ierr);
105862b4c0b3SBarry Smith   ierr = PLA_Obj_API_open(v_pla);CHKERRQ(ierr);
105901b82886SBarry Smith   ierr = VecGetArray(b,&array);CHKERRQ(ierr);
106062b4c0b3SBarry Smith   ierr = PLA_API_axpy_vector_to_global(m,&one,(void *)array,1,v_pla,lu->rstart);CHKERRQ(ierr);
106101b82886SBarry Smith   ierr = VecRestoreArray(b,&array);CHKERRQ(ierr);
106262b4c0b3SBarry Smith   ierr = PLA_Obj_API_close(v_pla);CHKERRQ(ierr);
106362b4c0b3SBarry Smith   ierr = PLA_API_end();CHKERRQ(ierr);
106401b82886SBarry Smith 
106501b82886SBarry Smith   if (A->factor == FACTOR_LU){
106601b82886SBarry Smith     /* Apply the permutations to the right hand sides */
106762b4c0b3SBarry Smith     ierr = PLA_Apply_pivots_to_rows (v_pla,lu->pivots);CHKERRQ(ierr);
106801b82886SBarry Smith 
106901b82886SBarry Smith     /* Solve L y = b, overwriting b with y */
107062b4c0b3SBarry Smith     ierr = PLA_Trsv( PLA_LOWER_TRIANGULAR,PLA_NO_TRANSPOSE,PLA_UNIT_DIAG,lu->A,v_pla );CHKERRQ(ierr);
107101b82886SBarry Smith 
107201b82886SBarry Smith     /* Solve U x = y (=b), overwriting b with x */
107362b4c0b3SBarry Smith     ierr = PLA_Trsv( PLA_UPPER_TRIANGULAR,PLA_NO_TRANSPOSE,PLA_NONUNIT_DIAG,lu->A,v_pla );CHKERRQ(ierr);
107401b82886SBarry Smith   } else { /* FACTOR_CHOLESKY */
107562b4c0b3SBarry Smith     ierr = PLA_Trsv( PLA_LOWER_TRIANGULAR,PLA_NO_TRANSPOSE,PLA_NONUNIT_DIAG,lu->A,v_pla);CHKERRQ(ierr);
107662b4c0b3SBarry Smith     ierr = PLA_Trsv( PLA_LOWER_TRIANGULAR,(lu->datatype == MPI_DOUBLE ? PLA_TRANSPOSE : PLA_CONJUGATE_TRANSPOSE),PLA_NONUNIT_DIAG,lu->A,v_pla);CHKERRQ(ierr);
107701b82886SBarry Smith   }
107801b82886SBarry Smith 
107901b82886SBarry Smith   /* Copy PLAPACK x into Petsc vector x  */
108062b4c0b3SBarry Smith   ierr = PLA_Obj_local_length(v_pla, &loc_m);CHKERRQ(ierr);
108162b4c0b3SBarry Smith   ierr = PLA_Obj_local_buffer(v_pla, (void**)&loc_buf);CHKERRQ(ierr);
108262b4c0b3SBarry Smith   ierr = PLA_Obj_local_stride(v_pla, &loc_stride);CHKERRQ(ierr);
108301b82886SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,loc_m*loc_stride,loc_buf,&loc_x);CHKERRQ(ierr);
108401b82886SBarry Smith   if (!lu->pla_solved){
108501b82886SBarry Smith 
1086*04fea9ffSBarry Smith     ierr = PLA_Temp_comm_row_info(lu->templ,&dummy_comm,&r_rank,&r_nproc);CHKERRQ(ierr);
1087*04fea9ffSBarry Smith     ierr = PLA_Temp_comm_col_info(lu->templ,&dummy_comm,&c_rank,&c_nproc);CHKERRQ(ierr);
108801b82886SBarry Smith     /* printf(" [%d] rank: %d %d, nproc: %d %d\n",rank,r_rank,c_rank,r_nproc,c_nproc); */
108901b82886SBarry Smith 
109001b82886SBarry Smith     /* Create IS and cts for VecScatterring */
109162b4c0b3SBarry Smith     ierr = PLA_Obj_local_length(v_pla, &loc_m);CHKERRQ(ierr);
109262b4c0b3SBarry Smith     ierr = PLA_Obj_local_stride(v_pla, &loc_stride);CHKERRQ(ierr);
109301b82886SBarry Smith     ierr = PetscMalloc((2*loc_m+1)*sizeof(PetscInt),&idx_pla);CHKERRQ(ierr);
109401b82886SBarry Smith     idx_petsc = idx_pla + loc_m;
109501b82886SBarry Smith 
109601b82886SBarry Smith     rstart = (r_rank*c_nproc+c_rank)*lu->nb;
109701b82886SBarry Smith     for (i=0; i<loc_m; i+=lu->nb){
109801b82886SBarry Smith       j = 0;
109901b82886SBarry Smith       while (j < lu->nb && i+j < loc_m){
110001b82886SBarry Smith         idx_petsc[i+j] = rstart + j; j++;
110101b82886SBarry Smith       }
110201b82886SBarry Smith       rstart += size*lu->nb;
110301b82886SBarry Smith     }
110401b82886SBarry Smith 
110501b82886SBarry Smith     for (i=0; i<loc_m; i++) idx_pla[i] = i*loc_stride;
110601b82886SBarry Smith 
110701b82886SBarry Smith     ierr = ISCreateGeneral(PETSC_COMM_SELF,loc_m,idx_pla,&lu->is_pla);CHKERRQ(ierr);
110801b82886SBarry Smith     ierr = ISCreateGeneral(PETSC_COMM_SELF,loc_m,idx_petsc,&lu->is_petsc);CHKERRQ(ierr);
110901b82886SBarry Smith     ierr = PetscFree(idx_pla);CHKERRQ(ierr);
111001b82886SBarry Smith     ierr = VecScatterCreate(loc_x,lu->is_pla,x,lu->is_petsc,&lu->ctx);CHKERRQ(ierr);
111101b82886SBarry Smith   }
111201b82886SBarry Smith   ierr = VecScatterBegin(lu->ctx,loc_x,x,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
111301b82886SBarry Smith   ierr = VecScatterEnd(lu->ctx,loc_x,x,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
111401b82886SBarry Smith 
111501b82886SBarry Smith   /* Free data */
111601b82886SBarry Smith   ierr = VecDestroy(loc_x);CHKERRQ(ierr);
111762b4c0b3SBarry Smith   ierr = PLA_Obj_free(&v_pla);CHKERRQ(ierr);
111801b82886SBarry Smith 
111901b82886SBarry Smith   lu->pla_solved = PETSC_TRUE;
112001b82886SBarry Smith   PetscFunctionReturn(0);
112101b82886SBarry Smith }
112201b82886SBarry Smith 
112301b82886SBarry Smith #undef __FUNCT__
112401b82886SBarry Smith #define __FUNCT__ "MatLUFactorNumeric_MPIDense"
112501b82886SBarry Smith PetscErrorCode MatLUFactorNumeric_MPIDense(Mat A,MatFactorInfo *info,Mat *F)
112601b82886SBarry Smith {
112701b82886SBarry Smith   Mat_Plapack    *lu = (Mat_Plapack*)(*F)->spptr;
112801b82886SBarry Smith   PetscErrorCode ierr;
112901b82886SBarry Smith   PetscInt       M=A->rmap.N,m=A->rmap.n,rstart,rend;
113001b82886SBarry Smith   PetscInt       info_pla=0;
113101b82886SBarry Smith   PetscScalar    *array,one = 1.0;
113201b82886SBarry Smith 
113301b82886SBarry Smith   PetscFunctionBegin;
113462b4c0b3SBarry Smith   ierr = PLA_Obj_set_to_zero(lu->A);CHKERRQ(ierr);
113501b82886SBarry Smith 
113601b82886SBarry Smith   /* Copy A into lu->A */
113762b4c0b3SBarry Smith   ierr = PLA_API_begin();CHKERRQ(ierr);
113862b4c0b3SBarry Smith   ierr = PLA_Obj_API_open(lu->A);CHKERRQ(ierr);
113901b82886SBarry Smith   ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr);
114001b82886SBarry Smith   ierr = MatGetArray(A,&array);CHKERRQ(ierr);
114162b4c0b3SBarry Smith   ierr = PLA_API_axpy_matrix_to_global(m,M, &one,(void *)array,m,lu->A,rstart,0);CHKERRQ(ierr);
114201b82886SBarry Smith   ierr = MatRestoreArray(A,&array);CHKERRQ(ierr);
114362b4c0b3SBarry Smith   ierr = PLA_Obj_API_close(lu->A);CHKERRQ(ierr);
114462b4c0b3SBarry Smith   ierr = PLA_API_end();CHKERRQ(ierr);
114501b82886SBarry Smith 
114601b82886SBarry Smith   /* Factor P A -> L U overwriting lower triangular portion of A with L, upper, U */
114701b82886SBarry Smith   info_pla = PLA_LU(lu->A,lu->pivots);
114801b82886SBarry Smith   if (info_pla != 0)
114901b82886SBarry Smith     SETERRQ1(PETSC_ERR_MAT_LU_ZRPVT,"Zero pivot encountered at row %d from PLA_LU()",info_pla);
115001b82886SBarry Smith 
115101b82886SBarry Smith   lu->CleanUpPlapack = PETSC_TRUE;
115201b82886SBarry Smith   lu->rstart         = rstart;
115301b82886SBarry Smith 
115401b82886SBarry Smith   (*F)->assembled    = PETSC_TRUE;  /* required by -ksp_view */
115501b82886SBarry Smith   PetscFunctionReturn(0);
115601b82886SBarry Smith }
115701b82886SBarry Smith 
115801b82886SBarry Smith #undef __FUNCT__
115901b82886SBarry Smith #define __FUNCT__ "MatCholeskyFactorNumeric_MPIDense"
116001b82886SBarry Smith PetscErrorCode MatCholeskyFactorNumeric_MPIDense(Mat A,MatFactorInfo *info,Mat *F)
116101b82886SBarry Smith {
116201b82886SBarry Smith   Mat_Plapack    *lu = (Mat_Plapack*)(*F)->spptr;
116301b82886SBarry Smith   PetscErrorCode ierr;
116401b82886SBarry Smith   PetscInt       M=A->rmap.N,m=A->rmap.n,rstart,rend;
116501b82886SBarry Smith   PetscInt       info_pla=0;
116601b82886SBarry Smith   PetscScalar    *array,one = 1.0;
116701b82886SBarry Smith 
116801b82886SBarry Smith   PetscFunctionBegin;
1169e0fbc2eeSBarry Smith 
117001b82886SBarry Smith   /* Copy A into lu->A */
117162b4c0b3SBarry Smith   ierr = PLA_Obj_set_to_zero(lu->A);CHKERRQ(ierr);
117262b4c0b3SBarry Smith   ierr = PLA_API_begin();CHKERRQ(ierr);
117362b4c0b3SBarry Smith   ierr = PLA_Obj_API_open(lu->A);CHKERRQ(ierr);
117401b82886SBarry Smith   ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr);
117501b82886SBarry Smith   ierr = MatGetArray(A,&array);CHKERRQ(ierr);
117662b4c0b3SBarry Smith   ierr = PLA_API_axpy_matrix_to_global(m,M, &one,(void *)array,m,lu->A,rstart,0);CHKERRQ(ierr);
117701b82886SBarry Smith   ierr = MatRestoreArray(A,&array);CHKERRQ(ierr);
117862b4c0b3SBarry Smith   ierr = PLA_Obj_API_close(lu->A);CHKERRQ(ierr);
117962b4c0b3SBarry Smith   ierr = PLA_API_end();CHKERRQ(ierr);
118001b82886SBarry Smith 
118101b82886SBarry Smith   /* Factor P A -> Chol */
118201b82886SBarry Smith   info_pla = PLA_Chol(PLA_LOWER_TRIANGULAR,lu->A);
118301b82886SBarry Smith   if (info_pla != 0)
118401b82886SBarry Smith     SETERRQ1( PETSC_ERR_MAT_CH_ZRPVT,"Nonpositive definite matrix detected at row %d from PLA_Chol()",info_pla);
118501b82886SBarry Smith 
118601b82886SBarry Smith   lu->CleanUpPlapack = PETSC_TRUE;
118701b82886SBarry Smith   lu->rstart         = rstart;
118801b82886SBarry Smith 
118901b82886SBarry Smith   (*F)->assembled    = PETSC_TRUE;  /* required by -ksp_view */
119001b82886SBarry Smith   PetscFunctionReturn(0);
119101b82886SBarry Smith }
119201b82886SBarry Smith 
119301b82886SBarry Smith #undef __FUNCT__
119401b82886SBarry Smith #define __FUNCT__ "MatFactorSymbolic_MPIDense_Private"
119501b82886SBarry Smith PetscErrorCode MatFactorSymbolic_MPIDense_Private(Mat A,MatFactorInfo *info,Mat *F)
119601b82886SBarry Smith {
119701b82886SBarry Smith   Mat            B;
119801b82886SBarry Smith   Mat_Plapack    *lu;
119901b82886SBarry Smith   PetscErrorCode ierr;
120001b82886SBarry Smith   PetscInt       M=A->rmap.N,N=A->cmap.N;
1201*04fea9ffSBarry Smith   MPI_Comm       comm=((PetscObject)A)->comm;
120201b82886SBarry Smith   PetscMPIInt    size;
120301b82886SBarry Smith   PetscInt       ierror;
120401b82886SBarry Smith 
120501b82886SBarry Smith   PetscFunctionBegin;
120601b82886SBarry Smith   /* Create the factorization matrix */
120701b82886SBarry Smith   ierr = MatCreate(((PetscObject)A)->comm,&B);CHKERRQ(ierr);
120801b82886SBarry Smith   ierr = MatSetSizes(B,A->rmap.n,A->cmap.n,M,N);CHKERRQ(ierr);
120901b82886SBarry Smith   ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr);
121001b82886SBarry Smith 
121101b82886SBarry Smith   lu = (Mat_Plapack*)(B->spptr);
121201b82886SBarry Smith 
121301b82886SBarry Smith   /* Set default Plapack parameters */
121401b82886SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
121501b82886SBarry Smith   ierror = 0;
121601b82886SBarry Smith   lu->nb     = M/size;
121701b82886SBarry Smith   if (M - lu->nb*size) lu->nb++; /* without cyclic distribution */
121801b82886SBarry Smith 
121901b82886SBarry Smith   /* Set runtime options */
122001b82886SBarry Smith   ierr = PetscOptionsBegin(((PetscObject)A)->comm,((PetscObject)A)->prefix,"PLAPACK Options","Mat");CHKERRQ(ierr);
1221*04fea9ffSBarry Smith   ierr = PetscOptionsInt("-mat_plapack_nprows","row dimension of 2D processor mesh","None",Plapack_nprows,&Plapack_nprows,PETSC_NULL);CHKERRQ(ierr);
1222*04fea9ffSBarry Smith   ierr = PetscOptionsInt("-mat_plapack_npcols","column dimension of 2D processor mesh","None",Plapack_npcols,&Plapack_npcols,PETSC_NULL);CHKERRQ(ierr);
122301b82886SBarry Smith 
122401b82886SBarry Smith   ierr = PetscOptionsInt("-mat_plapack_nb","block size of template vector","None",lu->nb,&lu->nb,PETSC_NULL);CHKERRQ(ierr);
122501b82886SBarry Smith   ierr = PetscOptionsInt("-mat_plapack_ckerror","error checking flag","None",ierror,&ierror,PETSC_NULL);CHKERRQ(ierr);
122601b82886SBarry Smith   if (ierror){
122762b4c0b3SBarry Smith     ierr = PLA_Set_error_checking(ierror,PETSC_TRUE,PETSC_TRUE,PETSC_FALSE );CHKERRQ(ierr);
122801b82886SBarry Smith   } else {
122962b4c0b3SBarry Smith     ierr = PLA_Set_error_checking(ierror,PETSC_FALSE,PETSC_FALSE,PETSC_FALSE );CHKERRQ(ierr);
123001b82886SBarry Smith   }
123101b82886SBarry Smith   lu->ierror = ierror;
123201b82886SBarry Smith 
123301b82886SBarry Smith   lu->nb_alg = 0;
123401b82886SBarry Smith   ierr = PetscOptionsInt("-mat_plapack_nb_alg","algorithmic block size","None",lu->nb_alg,&lu->nb_alg,PETSC_NULL);CHKERRQ(ierr);
123501b82886SBarry Smith   if (lu->nb_alg){
123662b4c0b3SBarry Smith     ierr = pla_Environ_set_nb_alg (PLA_OP_ALL_ALG,lu->nb_alg);CHKERRQ(ierr);
123701b82886SBarry Smith   }
123801b82886SBarry Smith   PetscOptionsEnd();
123901b82886SBarry Smith 
124001b82886SBarry Smith 
124101b82886SBarry Smith   /* Create object distribution template */
124201b82886SBarry Smith   lu->templ = NULL;
124362b4c0b3SBarry Smith   ierr = PLA_Temp_create(lu->nb, 0, &lu->templ);CHKERRQ(ierr);
124401b82886SBarry Smith 
124501b82886SBarry Smith   /* Use suggested nb_alg if it is not provided by user */
124601b82886SBarry Smith   if (lu->nb_alg == 0){
124762b4c0b3SBarry Smith     ierr = PLA_Environ_nb_alg(PLA_OP_PAN_PAN,lu->templ,&lu->nb_alg);CHKERRQ(ierr);
124862b4c0b3SBarry Smith     ierr = pla_Environ_set_nb_alg(PLA_OP_ALL_ALG,lu->nb_alg);CHKERRQ(ierr);
124901b82886SBarry Smith   }
125001b82886SBarry Smith 
125101b82886SBarry Smith   /* Set the datatype */
125201b82886SBarry Smith #if defined(PETSC_USE_COMPLEX)
125301b82886SBarry Smith   lu->datatype = MPI_DOUBLE_COMPLEX;
125401b82886SBarry Smith #else
125501b82886SBarry Smith   lu->datatype = MPI_DOUBLE;
125601b82886SBarry Smith #endif
125701b82886SBarry Smith 
1258e1156936SBarry Smith   ierr = PLA_Matrix_create(lu->datatype,M,M,lu->templ,PLA_ALIGN_FIRST,PLA_ALIGN_FIRST,&lu->A);CHKERRQ(ierr);
1259e1156936SBarry Smith 
126001b82886SBarry Smith   lu->pla_solved     = PETSC_FALSE; /* MatSolve_Plapack() is called yet */
126101b82886SBarry Smith   lu->CleanUpPlapack = PETSC_TRUE;
126201b82886SBarry Smith   *F                 = B;
126301b82886SBarry Smith   PetscFunctionReturn(0);
126401b82886SBarry Smith }
126501b82886SBarry Smith 
126601b82886SBarry Smith /* Note the Petsc r and c permutations are ignored */
126701b82886SBarry Smith #undef __FUNCT__
126801b82886SBarry Smith #define __FUNCT__ "MatLUFactorSymbolic_MPIDense"
126901b82886SBarry Smith PetscErrorCode MatLUFactorSymbolic_MPIDense(Mat A,IS r,IS c,MatFactorInfo *info,Mat *F)
127001b82886SBarry Smith {
127101b82886SBarry Smith   PetscErrorCode ierr;
1272e1156936SBarry Smith   PetscInt       M = A->rmap.N;
1273e1156936SBarry Smith   Mat_Plapack    *lu;
127401b82886SBarry Smith 
127501b82886SBarry Smith   PetscFunctionBegin;
127601b82886SBarry Smith   ierr = MatFactorSymbolic_MPIDense_Private(A,info,F);CHKERRQ(ierr);
1277e1156936SBarry Smith   lu = (Mat_Plapack*)(*F)->spptr;
1278e1156936SBarry Smith   ierr = PLA_Mvector_create(MPI_INT,M,1,lu->templ,PLA_ALIGN_FIRST,&lu->pivots);CHKERRQ(ierr);
127901b82886SBarry Smith   (*F)->factor = FACTOR_LU;
128001b82886SBarry Smith   PetscFunctionReturn(0);
128101b82886SBarry Smith }
128201b82886SBarry Smith 
128301b82886SBarry Smith /* Note the Petsc perm permutation is ignored */
128401b82886SBarry Smith #undef __FUNCT__
128501b82886SBarry Smith #define __FUNCT__ "MatCholeskyFactorSymbolic_MPIDense"
128601b82886SBarry Smith PetscErrorCode MatCholeskyFactorSymbolic_MPIDense(Mat A,IS perm,MatFactorInfo *info,Mat *F)
128701b82886SBarry Smith {
128801b82886SBarry Smith   PetscErrorCode ierr;
128901b82886SBarry Smith   PetscTruth     issymmetric,set;
129001b82886SBarry Smith 
129101b82886SBarry Smith   PetscFunctionBegin;
129201b82886SBarry Smith   ierr = MatIsSymmetricKnown(A,&set,&issymmetric); CHKERRQ(ierr);
129301b82886SBarry Smith   if (!set || !issymmetric) SETERRQ(PETSC_ERR_USER,"Matrix must be set as MAT_SYMMETRIC for CholeskyFactor()");
129401b82886SBarry Smith   ierr = MatFactorSymbolic_MPIDense_Private(A,info,F);CHKERRQ(ierr);
129501b82886SBarry Smith   (*F)->factor = FACTOR_CHOLESKY;
129601b82886SBarry Smith   PetscFunctionReturn(0);
129701b82886SBarry Smith }
129801b82886SBarry Smith #endif
129901b82886SBarry Smith 
13008965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/
130109dc0095SBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIDense,
130209dc0095SBarry Smith        MatGetRow_MPIDense,
130309dc0095SBarry Smith        MatRestoreRow_MPIDense,
130409dc0095SBarry Smith        MatMult_MPIDense,
130597304618SKris Buschelman /* 4*/ MatMultAdd_MPIDense,
13067c922b88SBarry Smith        MatMultTranspose_MPIDense,
13077c922b88SBarry Smith        MatMultTransposeAdd_MPIDense,
130801b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK)
130901b82886SBarry Smith        MatSolve_MPIDense,
131001b82886SBarry Smith #else
13118965ea79SLois Curfman McInnes        0,
131201b82886SBarry Smith #endif
131309dc0095SBarry Smith        0,
131409dc0095SBarry Smith        0,
131597304618SKris Buschelman /*10*/ 0,
131609dc0095SBarry Smith        0,
131709dc0095SBarry Smith        0,
131809dc0095SBarry Smith        0,
131909dc0095SBarry Smith        MatTranspose_MPIDense,
132097304618SKris Buschelman /*15*/ MatGetInfo_MPIDense,
13216e4ee0c6SHong Zhang        MatEqual_MPIDense,
132209dc0095SBarry Smith        MatGetDiagonal_MPIDense,
13235b2fa520SLois Curfman McInnes        MatDiagonalScale_MPIDense,
132409dc0095SBarry Smith        MatNorm_MPIDense,
132597304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIDense,
132609dc0095SBarry Smith        MatAssemblyEnd_MPIDense,
132709dc0095SBarry Smith        0,
132809dc0095SBarry Smith        MatSetOption_MPIDense,
132909dc0095SBarry Smith        MatZeroEntries_MPIDense,
133097304618SKris Buschelman /*25*/ MatZeroRows_MPIDense,
133101b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK)
13320ad19415SHong Zhang        MatLUFactorSymbolic_MPIDense,
133301b82886SBarry Smith        MatLUFactorNumeric_MPIDense,
13340ad19415SHong Zhang        MatCholeskyFactorSymbolic_MPIDense,
133501b82886SBarry Smith        MatCholeskyFactorNumeric_MPIDense,
133601b82886SBarry Smith #else
1337919b68f7SBarry Smith        0,
133801b82886SBarry Smith        0,
133901b82886SBarry Smith        0,
134001b82886SBarry Smith        0,
134101b82886SBarry Smith #endif
134297304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPIDense,
1343273d9f13SBarry Smith        0,
134409dc0095SBarry Smith        0,
134509dc0095SBarry Smith        MatGetArray_MPIDense,
134609dc0095SBarry Smith        MatRestoreArray_MPIDense,
134797304618SKris Buschelman /*35*/ MatDuplicate_MPIDense,
134809dc0095SBarry Smith        0,
134909dc0095SBarry Smith        0,
135009dc0095SBarry Smith        0,
135109dc0095SBarry Smith        0,
135297304618SKris Buschelman /*40*/ 0,
13532ce60cd0SSatish Balay        MatGetSubMatrices_MPIDense,
135409dc0095SBarry Smith        0,
135509dc0095SBarry Smith        MatGetValues_MPIDense,
135609dc0095SBarry Smith        0,
135797304618SKris Buschelman /*45*/ 0,
135809dc0095SBarry Smith        MatScale_MPIDense,
135909dc0095SBarry Smith        0,
136009dc0095SBarry Smith        0,
136109dc0095SBarry Smith        0,
1362521d7252SBarry Smith /*50*/ 0,
136309dc0095SBarry Smith        0,
136409dc0095SBarry Smith        0,
136509dc0095SBarry Smith        0,
136609dc0095SBarry Smith        0,
136797304618SKris Buschelman /*55*/ 0,
136809dc0095SBarry Smith        0,
136909dc0095SBarry Smith        0,
137009dc0095SBarry Smith        0,
137109dc0095SBarry Smith        0,
137297304618SKris Buschelman /*60*/ MatGetSubMatrix_MPIDense,
1373b9b97703SBarry Smith        MatDestroy_MPIDense,
1374b9b97703SBarry Smith        MatView_MPIDense,
1375357abbc8SBarry Smith        0,
137697304618SKris Buschelman        0,
137797304618SKris Buschelman /*65*/ 0,
137897304618SKris Buschelman        0,
137997304618SKris Buschelman        0,
138097304618SKris Buschelman        0,
138197304618SKris Buschelman        0,
138297304618SKris Buschelman /*70*/ 0,
138397304618SKris Buschelman        0,
138497304618SKris Buschelman        0,
138597304618SKris Buschelman        0,
138697304618SKris Buschelman        0,
138797304618SKris Buschelman /*75*/ 0,
138897304618SKris Buschelman        0,
138997304618SKris Buschelman        0,
139097304618SKris Buschelman        0,
139197304618SKris Buschelman        0,
139297304618SKris Buschelman /*80*/ 0,
139397304618SKris Buschelman        0,
139497304618SKris Buschelman        0,
139597304618SKris Buschelman        0,
1396865e5f61SKris Buschelman /*84*/ MatLoad_MPIDense,
1397865e5f61SKris Buschelman        0,
1398865e5f61SKris Buschelman        0,
1399865e5f61SKris Buschelman        0,
1400865e5f61SKris Buschelman        0,
1401865e5f61SKris Buschelman        0,
1402865e5f61SKris Buschelman /*90*/ 0,
14034ae313f4SHong Zhang        MatMatMultSymbolic_MPIDense_MPIDense,
1404865e5f61SKris Buschelman        0,
1405865e5f61SKris Buschelman        0,
1406865e5f61SKris Buschelman        0,
1407865e5f61SKris Buschelman /*95*/ 0,
1408865e5f61SKris Buschelman        0,
1409865e5f61SKris Buschelman        0,
1410865e5f61SKris Buschelman        0};
14118965ea79SLois Curfman McInnes 
1412273d9f13SBarry Smith EXTERN_C_BEGIN
14134a2ae208SSatish Balay #undef __FUNCT__
1414a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIDenseSetPreallocation_MPIDense"
1415be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIDenseSetPreallocation_MPIDense(Mat mat,PetscScalar *data)
1416a23d5eceSKris Buschelman {
1417a23d5eceSKris Buschelman   Mat_MPIDense   *a;
1418dfbe8321SBarry Smith   PetscErrorCode ierr;
1419a23d5eceSKris Buschelman 
1420a23d5eceSKris Buschelman   PetscFunctionBegin;
1421a23d5eceSKris Buschelman   mat->preallocated = PETSC_TRUE;
1422a23d5eceSKris Buschelman   /* Note:  For now, when data is specified above, this assumes the user correctly
1423a23d5eceSKris Buschelman    allocates the local dense storage space.  We should add error checking. */
1424a23d5eceSKris Buschelman 
1425a23d5eceSKris Buschelman   a    = (Mat_MPIDense*)mat->data;
1426f69a0ea3SMatthew Knepley   ierr = MatCreate(PETSC_COMM_SELF,&a->A);CHKERRQ(ierr);
1427899cda47SBarry Smith   ierr = MatSetSizes(a->A,mat->rmap.n,mat->cmap.N,mat->rmap.n,mat->cmap.N);CHKERRQ(ierr);
14285c5985e7SKris Buschelman   ierr = MatSetType(a->A,MATSEQDENSE);CHKERRQ(ierr);
14295c5985e7SKris Buschelman   ierr = MatSeqDenseSetPreallocation(a->A,data);CHKERRQ(ierr);
143052e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr);
1431a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1432a23d5eceSKris Buschelman }
1433a23d5eceSKris Buschelman EXTERN_C_END
1434a23d5eceSKris Buschelman 
14357878bbefSBarry Smith EXTERN_C_BEGIN
14367878bbefSBarry Smith #if defined(PETSC_HAVE_PLAPACK)
14377878bbefSBarry Smith #undef __FUNCT__
14387878bbefSBarry Smith #define __FUNCT__ "MatSetSolverType_MPIDense_PLAPACK"
14397878bbefSBarry Smith PetscErrorCode PETSCMAT_DLLEXPORT MatSetSolverType_MPIDense_PLAPACK(Mat mat,const char *type)
14407878bbefSBarry Smith {
14417878bbefSBarry Smith   PetscFunctionBegin;
14427878bbefSBarry Smith   /* dummy function so that -mat_solver_type plapack or MatSetSolverType(mat,"plapack"); silently work (since PLAPACK is on by default) */
14437878bbefSBarry Smith   PetscFunctionReturn(0);
14447878bbefSBarry Smith }
14457878bbefSBarry Smith #endif
14467a667e6fSSatish Balay EXTERN_C_END
14477878bbefSBarry Smith 
14480bad9183SKris Buschelman /*MC
1449fafad747SKris Buschelman    MATMPIDENSE - MATMPIDENSE = "mpidense" - A matrix type to be used for distributed dense matrices.
14500bad9183SKris Buschelman 
14510bad9183SKris Buschelman    Options Database Keys:
14520bad9183SKris Buschelman . -mat_type mpidense - sets the matrix type to "mpidense" during a call to MatSetFromOptions()
14530bad9183SKris Buschelman 
14540bad9183SKris Buschelman   Level: beginner
14550bad9183SKris Buschelman 
14567878bbefSBarry Smith   MATMPIDENSE matrices may use direct solvers (LU, Cholesky, and QR)
14577878bbefSBarry Smith   for parallel dense matrices via the external package PLAPACK, if PLAPACK is installed
14587878bbefSBarry Smith   (run config/configure.py with the option --download-plapack)
14597878bbefSBarry Smith 
14607878bbefSBarry Smith 
14617878bbefSBarry Smith   Options Database Keys:
14627878bbefSBarry Smith . -mat_plapack_nprows <n> - number of rows in processor partition
14637878bbefSBarry Smith . -mat_plapack_npcols <n> - number of columns in processor partition
14647878bbefSBarry Smith . -mat_plapack_nb <n> - block size of template vector
14657878bbefSBarry Smith . -mat_plapack_nb_alg <n> - algorithmic block size
14667878bbefSBarry Smith - -mat_plapack_ckerror <n> - error checking flag
14677878bbefSBarry Smith 
14687878bbefSBarry Smith .seealso: MatCreateMPIDense(), MATDENSE, MATSEQDENSE
14690bad9183SKris Buschelman M*/
14700bad9183SKris Buschelman 
1471a23d5eceSKris Buschelman EXTERN_C_BEGIN
1472a23d5eceSKris Buschelman #undef __FUNCT__
14734a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIDense"
1474be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPIDense(Mat mat)
1475273d9f13SBarry Smith {
1476273d9f13SBarry Smith   Mat_MPIDense   *a;
1477dfbe8321SBarry Smith   PetscErrorCode ierr;
147801b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK)
147901b82886SBarry Smith   Mat_Plapack    *lu;
148001b82886SBarry Smith #endif
1481273d9f13SBarry Smith 
1482273d9f13SBarry Smith   PetscFunctionBegin;
148338f2d2fdSLisandro Dalcin   ierr              = PetscNewLog(mat,Mat_MPIDense,&a);CHKERRQ(ierr);
1484b0a32e0cSBarry Smith   mat->data         = (void*)a;
1485273d9f13SBarry Smith   ierr              = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1486273d9f13SBarry Smith   mat->factor       = 0;
1487273d9f13SBarry Smith   mat->mapping      = 0;
1488273d9f13SBarry Smith 
1489273d9f13SBarry Smith   mat->insertmode = NOT_SET_VALUES;
14907adad957SLisandro Dalcin   ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&a->rank);CHKERRQ(ierr);
14917adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)mat)->comm,&a->size);CHKERRQ(ierr);
1492273d9f13SBarry Smith 
1493899cda47SBarry Smith   mat->rmap.bs = mat->cmap.bs = 1;
14946148ca0dSBarry Smith   ierr = PetscMapSetUp(&mat->rmap);CHKERRQ(ierr);
14956148ca0dSBarry Smith   ierr = PetscMapSetUp(&mat->cmap);CHKERRQ(ierr);
1496899cda47SBarry Smith   a->nvec = mat->cmap.n;
1497273d9f13SBarry Smith 
1498273d9f13SBarry Smith   /* build cache for off array entries formed */
1499273d9f13SBarry Smith   a->donotstash = PETSC_FALSE;
15007adad957SLisandro Dalcin   ierr = MatStashCreate_Private(((PetscObject)mat)->comm,1,&mat->stash);CHKERRQ(ierr);
1501273d9f13SBarry Smith 
1502273d9f13SBarry Smith   /* stuff used for matrix vector multiply */
1503273d9f13SBarry Smith   a->lvec        = 0;
1504273d9f13SBarry Smith   a->Mvctx       = 0;
1505273d9f13SBarry Smith   a->roworiented = PETSC_TRUE;
1506273d9f13SBarry Smith 
1507273d9f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatGetDiagonalBlock_C",
1508273d9f13SBarry Smith                                      "MatGetDiagonalBlock_MPIDense",
1509273d9f13SBarry Smith                                      MatGetDiagonalBlock_MPIDense);CHKERRQ(ierr);
1510a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMPIDenseSetPreallocation_C",
1511a23d5eceSKris Buschelman                                      "MatMPIDenseSetPreallocation_MPIDense",
1512a23d5eceSKris Buschelman                                      MatMPIDenseSetPreallocation_MPIDense);CHKERRQ(ierr);
15134ae313f4SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMatMult_mpiaij_mpidense_C",
15144ae313f4SHong Zhang                                      "MatMatMult_MPIAIJ_MPIDense",
15154ae313f4SHong Zhang                                       MatMatMult_MPIAIJ_MPIDense);CHKERRQ(ierr);
15164ae313f4SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C",
15174ae313f4SHong Zhang                                      "MatMatMultSymbolic_MPIAIJ_MPIDense",
15184ae313f4SHong Zhang                                       MatMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr);
15194ae313f4SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C",
15204ae313f4SHong Zhang                                      "MatMatMultNumeric_MPIAIJ_MPIDense",
15214ae313f4SHong Zhang                                       MatMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr);
15227878bbefSBarry Smith #if defined(PETSC_HAVE_PLAPACK)
15237878bbefSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatSetSolverType_mpidense_plapack_C",
15247878bbefSBarry Smith                                      "MatSetSolverType_MPIDense_PLAPACK",
15257878bbefSBarry Smith                                       MatSetSolverType_MPIDense_PLAPACK);CHKERRQ(ierr);
15267878bbefSBarry Smith #endif
152738aed534SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)mat,MATMPIDENSE);CHKERRQ(ierr);
152801b82886SBarry Smith 
152901b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK)
153001b82886SBarry Smith   ierr = PetscNewLog(mat,Mat_Plapack,&lu);CHKERRQ(ierr);
153101b82886SBarry Smith   lu->CleanUpPlapack       = PETSC_FALSE;
153201b82886SBarry Smith   mat->spptr                 = (void*)lu;
153301b82886SBarry Smith #endif
1534273d9f13SBarry Smith   PetscFunctionReturn(0);
1535273d9f13SBarry Smith }
1536273d9f13SBarry Smith EXTERN_C_END
1537273d9f13SBarry Smith 
1538209238afSKris Buschelman /*MC
1539002d173eSKris Buschelman    MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices.
1540209238afSKris Buschelman 
1541209238afSKris Buschelman    This matrix type is identical to MATSEQDENSE when constructed with a single process communicator,
1542209238afSKris Buschelman    and MATMPIDENSE otherwise.
1543209238afSKris Buschelman 
1544209238afSKris Buschelman    Options Database Keys:
1545209238afSKris Buschelman . -mat_type dense - sets the matrix type to "dense" during a call to MatSetFromOptions()
1546209238afSKris Buschelman 
1547209238afSKris Buschelman   Level: beginner
1548209238afSKris Buschelman 
154901b82886SBarry Smith 
1550209238afSKris Buschelman .seealso: MatCreateMPIDense,MATSEQDENSE,MATMPIDENSE
1551209238afSKris Buschelman M*/
1552209238afSKris Buschelman 
1553209238afSKris Buschelman EXTERN_C_BEGIN
1554209238afSKris Buschelman #undef __FUNCT__
1555209238afSKris Buschelman #define __FUNCT__ "MatCreate_Dense"
1556be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_Dense(Mat A)
1557dfbe8321SBarry Smith {
15586849ba73SBarry Smith   PetscErrorCode ierr;
155913f74950SBarry Smith   PetscMPIInt    size;
1560209238afSKris Buschelman 
1561209238afSKris Buschelman   PetscFunctionBegin;
15627adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr);
1563209238afSKris Buschelman   if (size == 1) {
1564209238afSKris Buschelman     ierr = MatSetType(A,MATSEQDENSE);CHKERRQ(ierr);
1565209238afSKris Buschelman   } else {
1566209238afSKris Buschelman     ierr = MatSetType(A,MATMPIDENSE);CHKERRQ(ierr);
1567209238afSKris Buschelman   }
1568209238afSKris Buschelman   PetscFunctionReturn(0);
1569209238afSKris Buschelman }
1570209238afSKris Buschelman EXTERN_C_END
1571209238afSKris Buschelman 
15724a2ae208SSatish Balay #undef __FUNCT__
15734a2ae208SSatish Balay #define __FUNCT__ "MatMPIDenseSetPreallocation"
1574273d9f13SBarry Smith /*@C
1575273d9f13SBarry Smith    MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries
1576273d9f13SBarry Smith 
1577273d9f13SBarry Smith    Not collective
1578273d9f13SBarry Smith 
1579273d9f13SBarry Smith    Input Parameters:
1580273d9f13SBarry Smith .  A - the matrix
1581273d9f13SBarry Smith -  data - optional location of matrix data.  Set data=PETSC_NULL for PETSc
1582273d9f13SBarry Smith    to control all matrix memory allocation.
1583273d9f13SBarry Smith 
1584273d9f13SBarry Smith    Notes:
1585273d9f13SBarry Smith    The dense format is fully compatible with standard Fortran 77
1586273d9f13SBarry Smith    storage by columns.
1587273d9f13SBarry Smith 
1588273d9f13SBarry Smith    The data input variable is intended primarily for Fortran programmers
1589273d9f13SBarry Smith    who wish to allocate their own matrix memory space.  Most users should
1590273d9f13SBarry Smith    set data=PETSC_NULL.
1591273d9f13SBarry Smith 
1592273d9f13SBarry Smith    Level: intermediate
1593273d9f13SBarry Smith 
1594273d9f13SBarry Smith .keywords: matrix,dense, parallel
1595273d9f13SBarry Smith 
1596273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues()
1597273d9f13SBarry Smith @*/
1598be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIDenseSetPreallocation(Mat mat,PetscScalar *data)
1599273d9f13SBarry Smith {
1600dfbe8321SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscScalar *);
1601273d9f13SBarry Smith 
1602273d9f13SBarry Smith   PetscFunctionBegin;
1603565567f0SKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
1604a23d5eceSKris Buschelman   if (f) {
1605a23d5eceSKris Buschelman     ierr = (*f)(mat,data);CHKERRQ(ierr);
1606a23d5eceSKris Buschelman   }
1607273d9f13SBarry Smith   PetscFunctionReturn(0);
1608273d9f13SBarry Smith }
1609273d9f13SBarry Smith 
16104a2ae208SSatish Balay #undef __FUNCT__
16114a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPIDense"
16128965ea79SLois Curfman McInnes /*@C
161339ddd567SLois Curfman McInnes    MatCreateMPIDense - Creates a sparse parallel matrix in dense format.
16148965ea79SLois Curfman McInnes 
1615db81eaa0SLois Curfman McInnes    Collective on MPI_Comm
1616db81eaa0SLois Curfman McInnes 
16178965ea79SLois Curfman McInnes    Input Parameters:
1618db81eaa0SLois Curfman McInnes +  comm - MPI communicator
16198965ea79SLois Curfman McInnes .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1620db81eaa0SLois Curfman McInnes .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
16218965ea79SLois Curfman McInnes .  M - number of global rows (or PETSC_DECIDE to have calculated if m is given)
1622db81eaa0SLois Curfman McInnes .  N - number of global columns (or PETSC_DECIDE to have calculated if n is given)
16237f5ff6fdSBarry Smith -  data - optional location of matrix data.  Set data=PETSC_NULL (PETSC_NULL_SCALAR for Fortran users) for PETSc
1624dfc5480cSLois Curfman McInnes    to control all matrix memory allocation.
16258965ea79SLois Curfman McInnes 
16268965ea79SLois Curfman McInnes    Output Parameter:
1627477f1c0bSLois Curfman McInnes .  A - the matrix
16288965ea79SLois Curfman McInnes 
1629b259b22eSLois Curfman McInnes    Notes:
163039ddd567SLois Curfman McInnes    The dense format is fully compatible with standard Fortran 77
163139ddd567SLois Curfman McInnes    storage by columns.
16328965ea79SLois Curfman McInnes 
163318f449edSLois Curfman McInnes    The data input variable is intended primarily for Fortran programmers
163418f449edSLois Curfman McInnes    who wish to allocate their own matrix memory space.  Most users should
16357f5ff6fdSBarry Smith    set data=PETSC_NULL (PETSC_NULL_SCALAR for Fortran users).
163618f449edSLois Curfman McInnes 
16378965ea79SLois Curfman McInnes    The user MUST specify either the local or global matrix dimensions
16388965ea79SLois Curfman McInnes    (possibly both).
16398965ea79SLois Curfman McInnes 
1640027ccd11SLois Curfman McInnes    Level: intermediate
1641027ccd11SLois Curfman McInnes 
164239ddd567SLois Curfman McInnes .keywords: matrix,dense, parallel
16438965ea79SLois Curfman McInnes 
164439ddd567SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues()
16458965ea79SLois Curfman McInnes @*/
1646be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPIDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A)
16478965ea79SLois Curfman McInnes {
16486849ba73SBarry Smith   PetscErrorCode ierr;
164913f74950SBarry Smith   PetscMPIInt    size;
16508965ea79SLois Curfman McInnes 
16513a40ed3dSBarry Smith   PetscFunctionBegin;
1652f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
1653f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
1654273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
1655273d9f13SBarry Smith   if (size > 1) {
1656273d9f13SBarry Smith     ierr = MatSetType(*A,MATMPIDENSE);CHKERRQ(ierr);
1657273d9f13SBarry Smith     ierr = MatMPIDenseSetPreallocation(*A,data);CHKERRQ(ierr);
1658273d9f13SBarry Smith   } else {
1659273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr);
1660273d9f13SBarry Smith     ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr);
16618c469469SLois Curfman McInnes   }
16623a40ed3dSBarry Smith   PetscFunctionReturn(0);
16638965ea79SLois Curfman McInnes }
16648965ea79SLois Curfman McInnes 
16654a2ae208SSatish Balay #undef __FUNCT__
16664a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIDense"
16676849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat)
16688965ea79SLois Curfman McInnes {
16698965ea79SLois Curfman McInnes   Mat            mat;
16703501a2bdSLois Curfman McInnes   Mat_MPIDense   *a,*oldmat = (Mat_MPIDense*)A->data;
1671dfbe8321SBarry Smith   PetscErrorCode ierr;
16728965ea79SLois Curfman McInnes 
16733a40ed3dSBarry Smith   PetscFunctionBegin;
16748965ea79SLois Curfman McInnes   *newmat       = 0;
16757adad957SLisandro Dalcin   ierr = MatCreate(((PetscObject)A)->comm,&mat);CHKERRQ(ierr);
1676899cda47SBarry Smith   ierr = MatSetSizes(mat,A->rmap.n,A->cmap.n,A->rmap.N,A->cmap.N);CHKERRQ(ierr);
16777adad957SLisandro Dalcin   ierr = MatSetType(mat,((PetscObject)A)->type_name);CHKERRQ(ierr);
1678834f8fabSBarry Smith   a                 = (Mat_MPIDense*)mat->data;
1679e04c1aa4SHong Zhang   ierr              = PetscMemcpy(mat->ops,A->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
16803501a2bdSLois Curfman McInnes   mat->factor       = A->factor;
1681c456f294SBarry Smith   mat->assembled    = PETSC_TRUE;
1682273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
16838965ea79SLois Curfman McInnes 
1684899cda47SBarry Smith   mat->rmap.rstart     = A->rmap.rstart;
1685899cda47SBarry Smith   mat->rmap.rend       = A->rmap.rend;
16868965ea79SLois Curfman McInnes   a->size              = oldmat->size;
16878965ea79SLois Curfman McInnes   a->rank              = oldmat->rank;
1688e0fa3b82SLois Curfman McInnes   mat->insertmode      = NOT_SET_VALUES;
1689b9b97703SBarry Smith   a->nvec              = oldmat->nvec;
16903782ba37SSatish Balay   a->donotstash        = oldmat->donotstash;
1691e04c1aa4SHong Zhang 
1692899cda47SBarry Smith   ierr = PetscMemcpy(mat->rmap.range,A->rmap.range,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr);
1693899cda47SBarry Smith   ierr = PetscMemcpy(mat->cmap.range,A->cmap.range,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr);
16947adad957SLisandro Dalcin   ierr = MatStashCreate_Private(((PetscObject)A)->comm,1,&mat->stash);CHKERRQ(ierr);
16958965ea79SLois Curfman McInnes 
1696329f5518SBarry Smith   ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr);
16975609ef8eSBarry Smith   ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
169852e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr);
169901b82886SBarry Smith 
170001b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK)
170101b82886SBarry Smith   ierr = PetscMemcpy(mat->spptr,A->spptr,sizeof(Mat_Plapack));CHKERRQ(ierr);
170201b82886SBarry Smith #endif
17038965ea79SLois Curfman McInnes   *newmat = mat;
17043a40ed3dSBarry Smith   PetscFunctionReturn(0);
17058965ea79SLois Curfman McInnes }
17068965ea79SLois Curfman McInnes 
1707e090d566SSatish Balay #include "petscsys.h"
17088965ea79SLois Curfman McInnes 
17094a2ae208SSatish Balay #undef __FUNCT__
17104a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIDense_DenseInFile"
1711f69a0ea3SMatthew Knepley PetscErrorCode MatLoad_MPIDense_DenseInFile(MPI_Comm comm,PetscInt fd,PetscInt M,PetscInt N, MatType type,Mat *newmat)
171290ace30eSBarry Smith {
17136849ba73SBarry Smith   PetscErrorCode ierr;
171432dcc486SBarry Smith   PetscMPIInt    rank,size;
171513f74950SBarry Smith   PetscInt       *rowners,i,m,nz,j;
171687828ca2SBarry Smith   PetscScalar    *array,*vals,*vals_ptr;
171790ace30eSBarry Smith   MPI_Status     status;
171890ace30eSBarry Smith 
17193a40ed3dSBarry Smith   PetscFunctionBegin;
1720d132466eSBarry Smith   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
1721d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
172290ace30eSBarry Smith 
172390ace30eSBarry Smith   /* determine ownership of all rows */
172490ace30eSBarry Smith   m          = M/size + ((M % size) > rank);
172513f74950SBarry Smith   ierr       = PetscMalloc((size+2)*sizeof(PetscInt),&rowners);CHKERRQ(ierr);
172613f74950SBarry Smith   ierr       = MPI_Allgather(&m,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr);
172790ace30eSBarry Smith   rowners[0] = 0;
172890ace30eSBarry Smith   for (i=2; i<=size; i++) {
172990ace30eSBarry Smith     rowners[i] += rowners[i-1];
173090ace30eSBarry Smith   }
173190ace30eSBarry Smith 
1732f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,newmat);CHKERRQ(ierr);
1733f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*newmat,m,PETSC_DECIDE,M,N);CHKERRQ(ierr);
1734be5d1d56SKris Buschelman   ierr = MatSetType(*newmat,type);CHKERRQ(ierr);
1735878740d9SKris Buschelman   ierr = MatMPIDenseSetPreallocation(*newmat,PETSC_NULL);CHKERRQ(ierr);
173690ace30eSBarry Smith   ierr = MatGetArray(*newmat,&array);CHKERRQ(ierr);
173790ace30eSBarry Smith 
173890ace30eSBarry Smith   if (!rank) {
173987828ca2SBarry Smith     ierr = PetscMalloc(m*N*sizeof(PetscScalar),&vals);CHKERRQ(ierr);
174090ace30eSBarry Smith 
174190ace30eSBarry Smith     /* read in my part of the matrix numerical values  */
17420752156aSBarry Smith     ierr = PetscBinaryRead(fd,vals,m*N,PETSC_SCALAR);CHKERRQ(ierr);
174390ace30eSBarry Smith 
174490ace30eSBarry Smith     /* insert into matrix-by row (this is why cannot directly read into array */
174590ace30eSBarry Smith     vals_ptr = vals;
174690ace30eSBarry Smith     for (i=0; i<m; i++) {
174790ace30eSBarry Smith       for (j=0; j<N; j++) {
174890ace30eSBarry Smith         array[i + j*m] = *vals_ptr++;
174990ace30eSBarry Smith       }
175090ace30eSBarry Smith     }
175190ace30eSBarry Smith 
175290ace30eSBarry Smith     /* read in other processors and ship out */
175390ace30eSBarry Smith     for (i=1; i<size; i++) {
175490ace30eSBarry Smith       nz   = (rowners[i+1] - rowners[i])*N;
17550752156aSBarry Smith       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
17567adad957SLisandro Dalcin       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)(*newmat))->tag,comm);CHKERRQ(ierr);
175790ace30eSBarry Smith     }
17583a40ed3dSBarry Smith   } else {
175990ace30eSBarry Smith     /* receive numeric values */
176087828ca2SBarry Smith     ierr = PetscMalloc(m*N*sizeof(PetscScalar),&vals);CHKERRQ(ierr);
176190ace30eSBarry Smith 
176290ace30eSBarry Smith     /* receive message of values*/
17637adad957SLisandro Dalcin     ierr = MPI_Recv(vals,m*N,MPIU_SCALAR,0,((PetscObject)(*newmat))->tag,comm,&status);CHKERRQ(ierr);
176490ace30eSBarry Smith 
176590ace30eSBarry Smith     /* insert into matrix-by row (this is why cannot directly read into array */
176690ace30eSBarry Smith     vals_ptr = vals;
176790ace30eSBarry Smith     for (i=0; i<m; i++) {
176890ace30eSBarry Smith       for (j=0; j<N; j++) {
176990ace30eSBarry Smith         array[i + j*m] = *vals_ptr++;
177090ace30eSBarry Smith       }
177190ace30eSBarry Smith     }
177290ace30eSBarry Smith   }
1773606d414cSSatish Balay   ierr = PetscFree(rowners);CHKERRQ(ierr);
1774606d414cSSatish Balay   ierr = PetscFree(vals);CHKERRQ(ierr);
17756d4a8577SBarry Smith   ierr = MatAssemblyBegin(*newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
17766d4a8577SBarry Smith   ierr = MatAssemblyEnd(*newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
17773a40ed3dSBarry Smith   PetscFunctionReturn(0);
177890ace30eSBarry Smith }
177990ace30eSBarry Smith 
17804a2ae208SSatish Balay #undef __FUNCT__
17814a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIDense"
1782f69a0ea3SMatthew Knepley PetscErrorCode MatLoad_MPIDense(PetscViewer viewer, MatType type,Mat *newmat)
17838965ea79SLois Curfman McInnes {
17848965ea79SLois Curfman McInnes   Mat            A;
178587828ca2SBarry Smith   PetscScalar    *vals,*svals;
178619bcc07fSBarry Smith   MPI_Comm       comm = ((PetscObject)viewer)->comm;
17878965ea79SLois Curfman McInnes   MPI_Status     status;
178813f74950SBarry Smith   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*rowners,*sndcounts,m,maxnz;
178913f74950SBarry Smith   PetscInt       header[4],*rowlengths = 0,M,N,*cols;
179013f74950SBarry Smith   PetscInt       *ourlens,*procsnz = 0,*offlens,jj,*mycols,*smycols;
179113f74950SBarry Smith   PetscInt       i,nz,j,rstart,rend;
179213f74950SBarry Smith   int            fd;
17936849ba73SBarry Smith   PetscErrorCode ierr;
17948965ea79SLois Curfman McInnes 
17953a40ed3dSBarry Smith   PetscFunctionBegin;
1796d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
1797d132466eSBarry Smith   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
17988965ea79SLois Curfman McInnes   if (!rank) {
1799b0a32e0cSBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
18000752156aSBarry Smith     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
1801552e946dSBarry Smith     if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
18028965ea79SLois Curfman McInnes   }
18038965ea79SLois Curfman McInnes 
180413f74950SBarry Smith   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
180590ace30eSBarry Smith   M = header[1]; N = header[2]; nz = header[3];
180690ace30eSBarry Smith 
180790ace30eSBarry Smith   /*
180890ace30eSBarry Smith        Handle case where matrix is stored on disk as a dense matrix
180990ace30eSBarry Smith   */
181090ace30eSBarry Smith   if (nz == MATRIX_BINARY_FORMAT_DENSE) {
1811be5d1d56SKris Buschelman     ierr = MatLoad_MPIDense_DenseInFile(comm,fd,M,N,type,newmat);CHKERRQ(ierr);
18123a40ed3dSBarry Smith     PetscFunctionReturn(0);
181390ace30eSBarry Smith   }
181490ace30eSBarry Smith 
18158965ea79SLois Curfman McInnes   /* determine ownership of all rows */
1816e44c0bd4SBarry Smith   m          = PetscMPIIntCast(M/size + ((M % size) > rank));
1817e44c0bd4SBarry Smith   ierr       = PetscMalloc((size+2)*sizeof(PetscMPIInt),&rowners);CHKERRQ(ierr);
1818ca161407SBarry Smith   ierr       = MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
18198965ea79SLois Curfman McInnes   rowners[0] = 0;
18208965ea79SLois Curfman McInnes   for (i=2; i<=size; i++) {
18218965ea79SLois Curfman McInnes     rowners[i] += rowners[i-1];
18228965ea79SLois Curfman McInnes   }
18238965ea79SLois Curfman McInnes   rstart = rowners[rank];
18248965ea79SLois Curfman McInnes   rend   = rowners[rank+1];
18258965ea79SLois Curfman McInnes 
18268965ea79SLois Curfman McInnes   /* distribute row lengths to all processors */
182713f74950SBarry Smith   ierr    = PetscMalloc(2*(rend-rstart+1)*sizeof(PetscInt),&ourlens);CHKERRQ(ierr);
18288965ea79SLois Curfman McInnes   offlens = ourlens + (rend-rstart);
18298965ea79SLois Curfman McInnes   if (!rank) {
183013f74950SBarry Smith     ierr = PetscMalloc(M*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
18310752156aSBarry Smith     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
183213f74950SBarry Smith     ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr);
18338965ea79SLois Curfman McInnes     for (i=0; i<size; i++) sndcounts[i] = rowners[i+1] - rowners[i];
18341466f1e1SBarry Smith     ierr = MPI_Scatterv(rowlengths,sndcounts,rowners,MPIU_INT,ourlens,rend-rstart,MPIU_INT,0,comm);CHKERRQ(ierr);
1835606d414cSSatish Balay     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
1836ca161407SBarry Smith   } else {
18371466f1e1SBarry Smith     ierr = MPI_Scatterv(0,0,0,MPIU_INT,ourlens,rend-rstart,MPIU_INT,0,comm);CHKERRQ(ierr);
18388965ea79SLois Curfman McInnes   }
18398965ea79SLois Curfman McInnes 
18408965ea79SLois Curfman McInnes   if (!rank) {
18418965ea79SLois Curfman McInnes     /* calculate the number of nonzeros on each processor */
184213f74950SBarry Smith     ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr);
184313f74950SBarry Smith     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
18448965ea79SLois Curfman McInnes     for (i=0; i<size; i++) {
18458965ea79SLois Curfman McInnes       for (j=rowners[i]; j< rowners[i+1]; j++) {
18468965ea79SLois Curfman McInnes         procsnz[i] += rowlengths[j];
18478965ea79SLois Curfman McInnes       }
18488965ea79SLois Curfman McInnes     }
1849606d414cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
18508965ea79SLois Curfman McInnes 
18518965ea79SLois Curfman McInnes     /* determine max buffer needed and allocate it */
18528965ea79SLois Curfman McInnes     maxnz = 0;
18538965ea79SLois Curfman McInnes     for (i=0; i<size; i++) {
18540452661fSBarry Smith       maxnz = PetscMax(maxnz,procsnz[i]);
18558965ea79SLois Curfman McInnes     }
185613f74950SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr);
18578965ea79SLois Curfman McInnes 
18588965ea79SLois Curfman McInnes     /* read in my part of the matrix column indices  */
18598965ea79SLois Curfman McInnes     nz = procsnz[0];
186013f74950SBarry Smith     ierr = PetscMalloc(nz*sizeof(PetscInt),&mycols);CHKERRQ(ierr);
18610752156aSBarry Smith     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
18628965ea79SLois Curfman McInnes 
18638965ea79SLois Curfman McInnes     /* read in every one elses and ship off */
18648965ea79SLois Curfman McInnes     for (i=1; i<size; i++) {
18658965ea79SLois Curfman McInnes       nz   = procsnz[i];
18660752156aSBarry Smith       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
186713f74950SBarry Smith       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
18688965ea79SLois Curfman McInnes     }
1869606d414cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
18703a40ed3dSBarry Smith   } else {
18718965ea79SLois Curfman McInnes     /* determine buffer space needed for message */
18728965ea79SLois Curfman McInnes     nz = 0;
18738965ea79SLois Curfman McInnes     for (i=0; i<m; i++) {
18748965ea79SLois Curfman McInnes       nz += ourlens[i];
18758965ea79SLois Curfman McInnes     }
187613f74950SBarry Smith     ierr = PetscMalloc((nz+1)*sizeof(PetscInt),&mycols);CHKERRQ(ierr);
18778965ea79SLois Curfman McInnes 
18788965ea79SLois Curfman McInnes     /* receive message of column indices*/
187913f74950SBarry Smith     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
188013f74950SBarry Smith     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
188129bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
18828965ea79SLois Curfman McInnes   }
18838965ea79SLois Curfman McInnes 
18848965ea79SLois Curfman McInnes   /* loop over local rows, determining number of off diagonal entries */
188513f74950SBarry Smith   ierr = PetscMemzero(offlens,m*sizeof(PetscInt));CHKERRQ(ierr);
18868965ea79SLois Curfman McInnes   jj = 0;
18878965ea79SLois Curfman McInnes   for (i=0; i<m; i++) {
18888965ea79SLois Curfman McInnes     for (j=0; j<ourlens[i]; j++) {
18898965ea79SLois Curfman McInnes       if (mycols[jj] < rstart || mycols[jj] >= rend) offlens[i]++;
18908965ea79SLois Curfman McInnes       jj++;
18918965ea79SLois Curfman McInnes     }
18928965ea79SLois Curfman McInnes   }
18938965ea79SLois Curfman McInnes 
18948965ea79SLois Curfman McInnes   /* create our matrix */
18958965ea79SLois Curfman McInnes   for (i=0; i<m; i++) {
18968965ea79SLois Curfman McInnes     ourlens[i] -= offlens[i];
18978965ea79SLois Curfman McInnes   }
1898f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,newmat);CHKERRQ(ierr);
1899f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*newmat,m,PETSC_DECIDE,M,N);CHKERRQ(ierr);
1900be5d1d56SKris Buschelman   ierr = MatSetType(*newmat,type);CHKERRQ(ierr);
1901878740d9SKris Buschelman   ierr = MatMPIDenseSetPreallocation(*newmat,PETSC_NULL);CHKERRQ(ierr);
19028965ea79SLois Curfman McInnes   A = *newmat;
19038965ea79SLois Curfman McInnes   for (i=0; i<m; i++) {
19048965ea79SLois Curfman McInnes     ourlens[i] += offlens[i];
19058965ea79SLois Curfman McInnes   }
19068965ea79SLois Curfman McInnes 
19078965ea79SLois Curfman McInnes   if (!rank) {
190887828ca2SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&vals);CHKERRQ(ierr);
19098965ea79SLois Curfman McInnes 
19108965ea79SLois Curfman McInnes     /* read in my part of the matrix numerical values  */
19118965ea79SLois Curfman McInnes     nz = procsnz[0];
19120752156aSBarry Smith     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
19138965ea79SLois Curfman McInnes 
19148965ea79SLois Curfman McInnes     /* insert into matrix */
19158965ea79SLois Curfman McInnes     jj      = rstart;
19168965ea79SLois Curfman McInnes     smycols = mycols;
19178965ea79SLois Curfman McInnes     svals   = vals;
19188965ea79SLois Curfman McInnes     for (i=0; i<m; i++) {
19198965ea79SLois Curfman McInnes       ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr);
19208965ea79SLois Curfman McInnes       smycols += ourlens[i];
19218965ea79SLois Curfman McInnes       svals   += ourlens[i];
19228965ea79SLois Curfman McInnes       jj++;
19238965ea79SLois Curfman McInnes     }
19248965ea79SLois Curfman McInnes 
19258965ea79SLois Curfman McInnes     /* read in other processors and ship out */
19268965ea79SLois Curfman McInnes     for (i=1; i<size; i++) {
19278965ea79SLois Curfman McInnes       nz   = procsnz[i];
19280752156aSBarry Smith       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
19297adad957SLisandro Dalcin       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)A)->tag,comm);CHKERRQ(ierr);
19308965ea79SLois Curfman McInnes     }
1931606d414cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
19323a40ed3dSBarry Smith   } else {
19338965ea79SLois Curfman McInnes     /* receive numeric values */
193484d528b1SBarry Smith     ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&vals);CHKERRQ(ierr);
19358965ea79SLois Curfman McInnes 
19368965ea79SLois Curfman McInnes     /* receive message of values*/
19377adad957SLisandro Dalcin     ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)A)->tag,comm,&status);CHKERRQ(ierr);
1938ca161407SBarry Smith     ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
193929bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
19408965ea79SLois Curfman McInnes 
19418965ea79SLois Curfman McInnes     /* insert into matrix */
19428965ea79SLois Curfman McInnes     jj      = rstart;
19438965ea79SLois Curfman McInnes     smycols = mycols;
19448965ea79SLois Curfman McInnes     svals   = vals;
19458965ea79SLois Curfman McInnes     for (i=0; i<m; i++) {
19468965ea79SLois Curfman McInnes       ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr);
19478965ea79SLois Curfman McInnes       smycols += ourlens[i];
19488965ea79SLois Curfman McInnes       svals   += ourlens[i];
19498965ea79SLois Curfman McInnes       jj++;
19508965ea79SLois Curfman McInnes     }
19518965ea79SLois Curfman McInnes   }
1952606d414cSSatish Balay   ierr = PetscFree(ourlens);CHKERRQ(ierr);
1953606d414cSSatish Balay   ierr = PetscFree(vals);CHKERRQ(ierr);
1954606d414cSSatish Balay   ierr = PetscFree(mycols);CHKERRQ(ierr);
1955606d414cSSatish Balay   ierr = PetscFree(rowners);CHKERRQ(ierr);
19568965ea79SLois Curfman McInnes 
19576d4a8577SBarry Smith   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
19586d4a8577SBarry Smith   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
19593a40ed3dSBarry Smith   PetscFunctionReturn(0);
19608965ea79SLois Curfman McInnes }
196190ace30eSBarry Smith 
19626e4ee0c6SHong Zhang #undef __FUNCT__
19636e4ee0c6SHong Zhang #define __FUNCT__ "MatEqual_MPIDense"
19646e4ee0c6SHong Zhang PetscErrorCode MatEqual_MPIDense(Mat A,Mat B,PetscTruth *flag)
19656e4ee0c6SHong Zhang {
19666e4ee0c6SHong Zhang   Mat_MPIDense   *matB = (Mat_MPIDense*)B->data,*matA = (Mat_MPIDense*)A->data;
19676e4ee0c6SHong Zhang   Mat            a,b;
19686e4ee0c6SHong Zhang   PetscTruth     flg;
19696e4ee0c6SHong Zhang   PetscErrorCode ierr;
197090ace30eSBarry Smith 
19716e4ee0c6SHong Zhang   PetscFunctionBegin;
19726e4ee0c6SHong Zhang   a = matA->A;
19736e4ee0c6SHong Zhang   b = matB->A;
19746e4ee0c6SHong Zhang   ierr = MatEqual(a,b,&flg);CHKERRQ(ierr);
19757adad957SLisandro Dalcin   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr);
19766e4ee0c6SHong Zhang   PetscFunctionReturn(0);
19776e4ee0c6SHong Zhang }
197890ace30eSBarry Smith 
197909d27a7eSBarry Smith #if defined(PETSC_HAVE_PLAPACK)
198009d27a7eSBarry Smith 
198109d27a7eSBarry Smith #undef __FUNCT__
198209d27a7eSBarry Smith #define __FUNCT__ "PetscPLAPACKFinalizePackage"
198309d27a7eSBarry Smith /*@C
198409d27a7eSBarry Smith   PetscPLAPACKFinalizePackage - This function destroys everything in the Petsc interface to PLAPACK.
198509d27a7eSBarry Smith   Level: developer
198609d27a7eSBarry Smith 
198709d27a7eSBarry Smith .keywords: Petsc, destroy, package, PLAPACK
198809d27a7eSBarry Smith .seealso: PetscFinalize()
198909d27a7eSBarry Smith @*/
199009d27a7eSBarry Smith PetscErrorCode PETSC_DLLEXPORT PetscPLAPACKFinalizePackage(void)
199109d27a7eSBarry Smith {
199209d27a7eSBarry Smith   PetscErrorCode ierr;
199309d27a7eSBarry Smith 
199409d27a7eSBarry Smith   PetscFunctionBegin;
199509d27a7eSBarry Smith   ierr = PLA_Finalize();CHKERRQ(ierr);
199609d27a7eSBarry Smith   PetscFunctionReturn(0);
199709d27a7eSBarry Smith }
199809d27a7eSBarry Smith 
199909d27a7eSBarry Smith #undef __FUNCT__
200009d27a7eSBarry Smith #define __FUNCT__ "PetscPLAPACKInitializePackage"
200109d27a7eSBarry Smith /*@C
200209d27a7eSBarry Smith   PetscPLAPACKInitializePackage - This function initializes everything in the Petsc interface to PLAPACK. It is
200309d27a7eSBarry Smith   called from PetscDLLibraryRegister() when using dynamic libraries, and on the call to PetscInitialize()
200409d27a7eSBarry Smith   when using static libraries.
200509d27a7eSBarry Smith 
200609d27a7eSBarry Smith   Input Parameter:
200709d27a7eSBarry Smith   path - The dynamic library path, or PETSC_NULL
200809d27a7eSBarry Smith 
200909d27a7eSBarry Smith   Level: developer
201009d27a7eSBarry Smith 
201109d27a7eSBarry Smith .keywords: Petsc, initialize, package, PLAPACK
201209d27a7eSBarry Smith .seealso: PetscInitializePackage(), PetscInitialize()
201309d27a7eSBarry Smith @*/
201409d27a7eSBarry Smith PetscErrorCode PETSC_DLLEXPORT PetscPLAPACKInitializePackage(const char path[])
201509d27a7eSBarry Smith {
2016*04fea9ffSBarry Smith   MPI_Comm       comm = PETSC_COMM_WORLD;
2017*04fea9ffSBarry Smith   PetscMPIInt    size;
201809d27a7eSBarry Smith   PetscErrorCode ierr;
201909d27a7eSBarry Smith 
202009d27a7eSBarry Smith   PetscFunctionBegin;
202109d27a7eSBarry Smith   if (!PLA_Initialized(PETSC_NULL)) {
202209d27a7eSBarry Smith 
202309d27a7eSBarry Smith     ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2024*04fea9ffSBarry Smith     Plapack_nprows = 1;
2025*04fea9ffSBarry Smith     Plapack_npcols = size;
202609d27a7eSBarry Smith 
2027*04fea9ffSBarry Smith     ierr = PLA_Comm_1D_to_2D(comm,Plapack_nprows,Plapack_npcols,&Plapack_comm_2d);CHKERRQ(ierr);
2028*04fea9ffSBarry Smith     ierr = PLA_Init(Plapack_comm_2d);CHKERRQ(ierr);
202909d27a7eSBarry Smith     ierr = PetscRegisterFinalize(PetscPLAPACKFinalizePackage);CHKERRQ(ierr);
203009d27a7eSBarry Smith   }
203109d27a7eSBarry Smith   PetscFunctionReturn(0);
203209d27a7eSBarry Smith }
203390ace30eSBarry Smith 
203490ace30eSBarry Smith 
203509d27a7eSBarry Smith #endif
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