1be1d678aSKris Buschelman 2ed3cc1f0SBarry Smith /* 3ed3cc1f0SBarry Smith Basic functions for basic parallel dense matrices. 4ed3cc1f0SBarry Smith */ 5ed3cc1f0SBarry Smith 6c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h> /*I "petscmat.h" I*/ 78949adfdSHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 8baa3c1c6SHong Zhang #include <petscblaslapack.h> 98965ea79SLois Curfman McInnes 10ab92ecdeSBarry Smith /*@ 11ab92ecdeSBarry Smith 12ab92ecdeSBarry Smith MatDenseGetLocalMatrix - For a MATMPIDENSE or MATSEQDENSE matrix returns the sequential 13ab92ecdeSBarry Smith matrix that represents the operator. For sequential matrices it returns itself. 14ab92ecdeSBarry Smith 15ab92ecdeSBarry Smith Input Parameter: 16ab92ecdeSBarry Smith . A - the Seq or MPI dense matrix 17ab92ecdeSBarry Smith 18ab92ecdeSBarry Smith Output Parameter: 19ab92ecdeSBarry Smith . B - the inner matrix 20ab92ecdeSBarry Smith 218e6c10adSSatish Balay Level: intermediate 228e6c10adSSatish Balay 23ab92ecdeSBarry Smith @*/ 24ab92ecdeSBarry Smith PetscErrorCode MatDenseGetLocalMatrix(Mat A,Mat *B) 25ab92ecdeSBarry Smith { 26ab92ecdeSBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 27ace3abfcSBarry Smith PetscBool flg; 28ab92ecdeSBarry Smith 29ab92ecdeSBarry Smith PetscFunctionBegin; 30d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 31d5ea218eSStefano Zampini PetscValidPointer(B,2); 329566063dSJacob Faibussowitsch PetscCall(PetscObjectBaseTypeCompare((PetscObject)A,MATMPIDENSE,&flg)); 332205254eSKarl Rupp if (flg) *B = mat->A; 34f140bc17SStefano Zampini else { 359566063dSJacob Faibussowitsch PetscCall(PetscObjectBaseTypeCompare((PetscObject)A,MATSEQDENSE,&flg)); 3628b400f6SJacob Faibussowitsch PetscCheck(flg,PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Not for matrix type %s",((PetscObject)A)->type_name); 37f140bc17SStefano Zampini *B = A; 38f140bc17SStefano Zampini } 39ab92ecdeSBarry Smith PetscFunctionReturn(0); 40ab92ecdeSBarry Smith } 41ab92ecdeSBarry Smith 42a76f77c3SStefano Zampini PetscErrorCode MatCopy_MPIDense(Mat A, Mat B, MatStructure s) 43a76f77c3SStefano Zampini { 44a76f77c3SStefano Zampini Mat_MPIDense *Amat = (Mat_MPIDense*)A->data; 45a76f77c3SStefano Zampini Mat_MPIDense *Bmat = (Mat_MPIDense*)B->data; 46a76f77c3SStefano Zampini 47a76f77c3SStefano Zampini PetscFunctionBegin; 489566063dSJacob Faibussowitsch PetscCall(MatCopy(Amat->A,Bmat->A,s)); 49a76f77c3SStefano Zampini PetscFunctionReturn(0); 50a76f77c3SStefano Zampini } 51a76f77c3SStefano Zampini 522f605a99SJose E. Roman PetscErrorCode MatShift_MPIDense(Mat A,PetscScalar alpha) 532f605a99SJose E. Roman { 542f605a99SJose E. Roman Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 552f605a99SJose E. Roman PetscInt j,lda,rstart = A->rmap->rstart,rend = A->rmap->rend,rend2; 562f605a99SJose E. Roman PetscScalar *v; 572f605a99SJose E. Roman 582f605a99SJose E. Roman PetscFunctionBegin; 592f605a99SJose E. Roman PetscCall(MatDenseGetArray(mat->A,&v)); 602f605a99SJose E. Roman PetscCall(MatDenseGetLDA(mat->A,&lda)); 612f605a99SJose E. Roman rend2 = PetscMin(rend,A->cmap->N); 622f605a99SJose E. Roman if (rend2>rstart) { 632f605a99SJose E. Roman for (j=rstart; j<rend2; j++) v[j-rstart+j*lda] += alpha; 642f605a99SJose E. Roman PetscCall(PetscLogFlops(rend2-rstart)); 652f605a99SJose E. Roman } 662f605a99SJose E. Roman PetscCall(MatDenseRestoreArray(mat->A,&v)); 672f605a99SJose E. Roman PetscFunctionReturn(0); 682f605a99SJose E. Roman } 692f605a99SJose E. Roman 70ba8c8a56SBarry Smith PetscErrorCode MatGetRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 71ba8c8a56SBarry Smith { 72ba8c8a56SBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 73d0f46423SBarry Smith PetscInt lrow,rstart = A->rmap->rstart,rend = A->rmap->rend; 74ba8c8a56SBarry Smith 75ba8c8a56SBarry Smith PetscFunctionBegin; 76aed4548fSBarry Smith PetscCheck(row >= rstart && row < rend,PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows"); 77ba8c8a56SBarry Smith lrow = row - rstart; 789566063dSJacob Faibussowitsch PetscCall(MatGetRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v)); 79ba8c8a56SBarry Smith PetscFunctionReturn(0); 80ba8c8a56SBarry Smith } 81ba8c8a56SBarry Smith 82637a0070SStefano Zampini PetscErrorCode MatRestoreRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 83ba8c8a56SBarry Smith { 84637a0070SStefano Zampini Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 85637a0070SStefano Zampini PetscInt lrow,rstart = A->rmap->rstart,rend = A->rmap->rend; 86ba8c8a56SBarry Smith 87ba8c8a56SBarry Smith PetscFunctionBegin; 88aed4548fSBarry Smith PetscCheck(row >= rstart && row < rend,PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows"); 89637a0070SStefano Zampini lrow = row - rstart; 909566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v)); 91ba8c8a56SBarry Smith PetscFunctionReturn(0); 92ba8c8a56SBarry Smith } 93ba8c8a56SBarry Smith 9411bd1e4dSLisandro Dalcin PetscErrorCode MatGetDiagonalBlock_MPIDense(Mat A,Mat *a) 950de54da6SSatish Balay { 960de54da6SSatish Balay Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 97d0f46423SBarry Smith PetscInt m = A->rmap->n,rstart = A->rmap->rstart; 9887828ca2SBarry Smith PetscScalar *array; 990de54da6SSatish Balay MPI_Comm comm; 1004b6ae80fSStefano Zampini PetscBool flg; 10111bd1e4dSLisandro Dalcin Mat B; 1020de54da6SSatish Balay 1030de54da6SSatish Balay PetscFunctionBegin; 1049566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A,&flg)); 10528b400f6SJacob Faibussowitsch PetscCheck(flg,PETSC_COMM_SELF,PETSC_ERR_SUP,"Only square matrices supported."); 1069566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)A,"DiagonalBlock",(PetscObject*)&B)); 107616b8fbbSStefano Zampini if (!B) { /* This should use MatDenseGetSubMatrix (not create), but we would need a call like MatRestoreDiagonalBlock */ 1084b6ae80fSStefano Zampini 1099566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)mdn->A,MATSEQDENSECUDA,&flg)); 11028b400f6SJacob Faibussowitsch PetscCheck(!flg,PETSC_COMM_SELF,PETSC_ERR_SUP,"Not coded for %s. Send an email to petsc-dev@mcs.anl.gov to request this feature",MATSEQDENSECUDA); 1119566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)(mdn->A),&comm)); 1129566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,&B)); 1139566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B,m,m,m,m)); 1149566063dSJacob Faibussowitsch PetscCall(MatSetType(B,((PetscObject)mdn->A)->type_name)); 1159566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(mdn->A,(const PetscScalar**)&array)); 1169566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(B,array+m*rstart)); 1179566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(mdn->A,(const PetscScalar**)&array)); 1189566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)A,"DiagonalBlock",(PetscObject)B)); 11911bd1e4dSLisandro Dalcin *a = B; 1209566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 1212205254eSKarl Rupp } else *a = B; 1220de54da6SSatish Balay PetscFunctionReturn(0); 1230de54da6SSatish Balay } 1240de54da6SSatish Balay 12513f74950SBarry Smith PetscErrorCode MatSetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],const PetscScalar v[],InsertMode addv) 1268965ea79SLois Curfman McInnes { 12739b7565bSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)mat->data; 128d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 129ace3abfcSBarry Smith PetscBool roworiented = A->roworiented; 1308965ea79SLois Curfman McInnes 1313a40ed3dSBarry Smith PetscFunctionBegin; 1328965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 1335ef9f2a5SBarry Smith if (idxm[i] < 0) continue; 13408401ef6SPierre Jolivet PetscCheck(idxm[i] < mat->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 1358965ea79SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 1368965ea79SLois Curfman McInnes row = idxm[i] - rstart; 13739b7565bSBarry Smith if (roworiented) { 1389566063dSJacob Faibussowitsch PetscCall(MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv)); 1393a40ed3dSBarry Smith } else { 1408965ea79SLois Curfman McInnes for (j=0; j<n; j++) { 1415ef9f2a5SBarry Smith if (idxn[j] < 0) continue; 14208401ef6SPierre Jolivet PetscCheck(idxn[j] < mat->cmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 1439566063dSJacob Faibussowitsch PetscCall(MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv)); 14439b7565bSBarry Smith } 1458965ea79SLois Curfman McInnes } 1462205254eSKarl Rupp } else if (!A->donotstash) { 1475080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 14839b7565bSBarry Smith if (roworiented) { 1499566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash,idxm[i],n,idxn,v+i*n,PETSC_FALSE)); 150d36fbae8SSatish Balay } else { 1519566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash,idxm[i],n,idxn,v+i,m,PETSC_FALSE)); 15239b7565bSBarry Smith } 153b49de8d1SLois Curfman McInnes } 154b49de8d1SLois Curfman McInnes } 1553a40ed3dSBarry Smith PetscFunctionReturn(0); 156b49de8d1SLois Curfman McInnes } 157b49de8d1SLois Curfman McInnes 15813f74950SBarry Smith PetscErrorCode MatGetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 159b49de8d1SLois Curfman McInnes { 160b49de8d1SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 161d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 162b49de8d1SLois Curfman McInnes 1633a40ed3dSBarry Smith PetscFunctionBegin; 164b49de8d1SLois Curfman McInnes for (i=0; i<m; i++) { 16554c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 16654c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 167b49de8d1SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 168b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 169b49de8d1SLois Curfman McInnes for (j=0; j<n; j++) { 17054c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 17154c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 1729566063dSJacob Faibussowitsch PetscCall(MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j)); 173b49de8d1SLois Curfman McInnes } 174e7e72b3dSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 1758965ea79SLois Curfman McInnes } 1763a40ed3dSBarry Smith PetscFunctionReturn(0); 1778965ea79SLois Curfman McInnes } 1788965ea79SLois Curfman McInnes 17949a6ff4bSBarry Smith static PetscErrorCode MatDenseGetLDA_MPIDense(Mat A,PetscInt *lda) 18049a6ff4bSBarry Smith { 18149a6ff4bSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 18249a6ff4bSBarry Smith 18349a6ff4bSBarry Smith PetscFunctionBegin; 1849566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,lda)); 18549a6ff4bSBarry Smith PetscFunctionReturn(0); 18649a6ff4bSBarry Smith } 18749a6ff4bSBarry Smith 188ad16ce7aSStefano Zampini static PetscErrorCode MatDenseSetLDA_MPIDense(Mat A,PetscInt lda) 189ad16ce7aSStefano Zampini { 190ad16ce7aSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 19117359960SJose E. Roman PetscBool iscuda; 192ad16ce7aSStefano Zampini 193ad16ce7aSStefano Zampini PetscFunctionBegin; 19417359960SJose E. Roman if (!a->A) { 19528b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1969566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->rmap)); 1979566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->cmap)); 1989566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF,&a->A)); 1999566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)a->A)); 2009566063dSJacob Faibussowitsch PetscCall(MatSetSizes(a->A,A->rmap->n,A->cmap->N,A->rmap->n,A->cmap->N)); 2019566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A,MATMPIDENSECUDA,&iscuda)); 2029566063dSJacob Faibussowitsch PetscCall(MatSetType(a->A,iscuda ? MATSEQDENSECUDA : MATSEQDENSE)); 20317359960SJose E. Roman } 2049566063dSJacob Faibussowitsch PetscCall(MatDenseSetLDA(a->A,lda)); 205ad16ce7aSStefano Zampini PetscFunctionReturn(0); 206ad16ce7aSStefano Zampini } 207ad16ce7aSStefano Zampini 208637a0070SStefano Zampini static PetscErrorCode MatDenseGetArray_MPIDense(Mat A,PetscScalar **array) 209ff14e315SSatish Balay { 210ff14e315SSatish Balay Mat_MPIDense *a = (Mat_MPIDense*)A->data; 211ff14e315SSatish Balay 2123a40ed3dSBarry Smith PetscFunctionBegin; 21328b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2149566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(a->A,array)); 2153a40ed3dSBarry Smith PetscFunctionReturn(0); 216ff14e315SSatish Balay } 217ff14e315SSatish Balay 218637a0070SStefano Zampini static PetscErrorCode MatDenseGetArrayRead_MPIDense(Mat A,const PetscScalar **array) 2198572280aSBarry Smith { 2208572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 2218572280aSBarry Smith 2228572280aSBarry Smith PetscFunctionBegin; 22328b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2249566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A,array)); 2258572280aSBarry Smith PetscFunctionReturn(0); 2268572280aSBarry Smith } 2278572280aSBarry Smith 2286947451fSStefano Zampini static PetscErrorCode MatDenseGetArrayWrite_MPIDense(Mat A,PetscScalar **array) 2296947451fSStefano Zampini { 2306947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 2316947451fSStefano Zampini 2326947451fSStefano Zampini PetscFunctionBegin; 23328b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2349566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(a->A,array)); 2356947451fSStefano Zampini PetscFunctionReturn(0); 2366947451fSStefano Zampini } 2376947451fSStefano Zampini 238637a0070SStefano Zampini static PetscErrorCode MatDensePlaceArray_MPIDense(Mat A,const PetscScalar *array) 239d3042a70SBarry Smith { 240d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 241d3042a70SBarry Smith 242d3042a70SBarry Smith PetscFunctionBegin; 24328b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 24428b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2459566063dSJacob Faibussowitsch PetscCall(MatDensePlaceArray(a->A,array)); 246d3042a70SBarry Smith PetscFunctionReturn(0); 247d3042a70SBarry Smith } 248d3042a70SBarry Smith 249d3042a70SBarry Smith static PetscErrorCode MatDenseResetArray_MPIDense(Mat A) 250d3042a70SBarry Smith { 251d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 252d3042a70SBarry Smith 253d3042a70SBarry Smith PetscFunctionBegin; 25428b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 25528b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2569566063dSJacob Faibussowitsch PetscCall(MatDenseResetArray(a->A)); 257d3042a70SBarry Smith PetscFunctionReturn(0); 258d3042a70SBarry Smith } 259d3042a70SBarry Smith 260d5ea218eSStefano Zampini static PetscErrorCode MatDenseReplaceArray_MPIDense(Mat A,const PetscScalar *array) 261d5ea218eSStefano Zampini { 262d5ea218eSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 263d5ea218eSStefano Zampini 264d5ea218eSStefano Zampini PetscFunctionBegin; 26528b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 26628b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2679566063dSJacob Faibussowitsch PetscCall(MatDenseReplaceArray(a->A,array)); 268d5ea218eSStefano Zampini PetscFunctionReturn(0); 269d5ea218eSStefano Zampini } 270d5ea218eSStefano Zampini 2717dae84e0SHong Zhang static PetscErrorCode MatCreateSubMatrix_MPIDense(Mat A,IS isrow,IS iscol,MatReuse scall,Mat *B) 272ca3fa75bSLois Curfman McInnes { 273ca3fa75bSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data,*newmatd; 274637a0070SStefano Zampini PetscInt lda,i,j,rstart,rend,nrows,ncols,Ncols,nlrows,nlcols; 2755d0c19d7SBarry Smith const PetscInt *irow,*icol; 276637a0070SStefano Zampini const PetscScalar *v; 277637a0070SStefano Zampini PetscScalar *bv; 278ca3fa75bSLois Curfman McInnes Mat newmat; 2794aa3045dSJed Brown IS iscol_local; 28042a884f0SBarry Smith MPI_Comm comm_is,comm_mat; 281ca3fa75bSLois Curfman McInnes 282ca3fa75bSLois Curfman McInnes PetscFunctionBegin; 2839566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A,&comm_mat)); 2849566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)iscol,&comm_is)); 28508401ef6SPierre Jolivet PetscCheck(comm_mat == comm_is,PETSC_COMM_SELF,PETSC_ERR_ARG_NOTSAMECOMM,"IS communicator must match matrix communicator"); 28642a884f0SBarry Smith 2879566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol,&iscol_local)); 2889566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isrow,&irow)); 2899566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_local,&icol)); 2909566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow,&nrows)); 2919566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol,&ncols)); 2929566063dSJacob Faibussowitsch PetscCall(ISGetSize(iscol,&Ncols)); /* global number of columns, size of iscol_local */ 293ca3fa75bSLois Curfman McInnes 294ca3fa75bSLois Curfman McInnes /* No parallel redistribution currently supported! Should really check each index set 2957eba5e9cSLois Curfman McInnes to comfirm that it is OK. ... Currently supports only submatrix same partitioning as 2967eba5e9cSLois Curfman McInnes original matrix! */ 297ca3fa75bSLois Curfman McInnes 2989566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A,&nlrows,&nlcols)); 2999566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A,&rstart,&rend)); 300ca3fa75bSLois Curfman McInnes 301ca3fa75bSLois Curfman McInnes /* Check submatrix call */ 302ca3fa75bSLois Curfman McInnes if (scall == MAT_REUSE_MATRIX) { 303e32f2f54SBarry Smith /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */ 3047eba5e9cSLois Curfman McInnes /* Really need to test rows and column sizes! */ 305ca3fa75bSLois Curfman McInnes newmat = *B; 306ca3fa75bSLois Curfman McInnes } else { 307ca3fa75bSLois Curfman McInnes /* Create and fill new matrix */ 3089566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&newmat)); 3099566063dSJacob Faibussowitsch PetscCall(MatSetSizes(newmat,nrows,ncols,PETSC_DECIDE,Ncols)); 3109566063dSJacob Faibussowitsch PetscCall(MatSetType(newmat,((PetscObject)A)->type_name)); 3119566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(newmat,NULL)); 312ca3fa75bSLois Curfman McInnes } 313ca3fa75bSLois Curfman McInnes 314ca3fa75bSLois Curfman McInnes /* Now extract the data pointers and do the copy, column at a time */ 315ca3fa75bSLois Curfman McInnes newmatd = (Mat_MPIDense*)newmat->data; 3169566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(newmatd->A,&bv)); 3179566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(mat->A,&v)); 3189566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(mat->A,&lda)); 3194aa3045dSJed Brown for (i=0; i<Ncols; i++) { 320637a0070SStefano Zampini const PetscScalar *av = v + lda*icol[i]; 321ca3fa75bSLois Curfman McInnes for (j=0; j<nrows; j++) { 3227eba5e9cSLois Curfman McInnes *bv++ = av[irow[j] - rstart]; 323ca3fa75bSLois Curfman McInnes } 324ca3fa75bSLois Curfman McInnes } 3259566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(mat->A,&v)); 3269566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(newmatd->A,&bv)); 327ca3fa75bSLois Curfman McInnes 328ca3fa75bSLois Curfman McInnes /* Assemble the matrices so that the correct flags are set */ 3299566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY)); 3309566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY)); 331ca3fa75bSLois Curfman McInnes 332ca3fa75bSLois Curfman McInnes /* Free work space */ 3339566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isrow,&irow)); 3349566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_local,&icol)); 3359566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 336ca3fa75bSLois Curfman McInnes *B = newmat; 337ca3fa75bSLois Curfman McInnes PetscFunctionReturn(0); 338ca3fa75bSLois Curfman McInnes } 339ca3fa75bSLois Curfman McInnes 340637a0070SStefano Zampini PetscErrorCode MatDenseRestoreArray_MPIDense(Mat A,PetscScalar **array) 341ff14e315SSatish Balay { 34273a71a0fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 34373a71a0fSBarry Smith 3443a40ed3dSBarry Smith PetscFunctionBegin; 3459566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(a->A,array)); 3463a40ed3dSBarry Smith PetscFunctionReturn(0); 347ff14e315SSatish Balay } 348ff14e315SSatish Balay 349637a0070SStefano Zampini PetscErrorCode MatDenseRestoreArrayRead_MPIDense(Mat A,const PetscScalar **array) 3508572280aSBarry Smith { 3518572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 3528572280aSBarry Smith 3538572280aSBarry Smith PetscFunctionBegin; 3549566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A,array)); 3558572280aSBarry Smith PetscFunctionReturn(0); 3568572280aSBarry Smith } 3578572280aSBarry Smith 3586947451fSStefano Zampini PetscErrorCode MatDenseRestoreArrayWrite_MPIDense(Mat A,PetscScalar **array) 3596947451fSStefano Zampini { 3606947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 3616947451fSStefano Zampini 3626947451fSStefano Zampini PetscFunctionBegin; 3639566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(a->A,array)); 3646947451fSStefano Zampini PetscFunctionReturn(0); 3656947451fSStefano Zampini } 3666947451fSStefano Zampini 367dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode) 3688965ea79SLois Curfman McInnes { 36939ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 37013f74950SBarry Smith PetscInt nstash,reallocs; 3718965ea79SLois Curfman McInnes 3723a40ed3dSBarry Smith PetscFunctionBegin; 3734067683fSStefano Zampini if (mdn->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 3748965ea79SLois Curfman McInnes 3759566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range)); 3769566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs)); 3779566063dSJacob Faibussowitsch PetscCall(PetscInfo(mdn->A,"Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n",nstash,reallocs)); 3783a40ed3dSBarry Smith PetscFunctionReturn(0); 3798965ea79SLois Curfman McInnes } 3808965ea79SLois Curfman McInnes 381dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode) 3828965ea79SLois Curfman McInnes { 38339ddd567SLois Curfman McInnes Mat_MPIDense *mdn=(Mat_MPIDense*)mat->data; 38413f74950SBarry Smith PetscInt i,*row,*col,flg,j,rstart,ncols; 38513f74950SBarry Smith PetscMPIInt n; 38687828ca2SBarry Smith PetscScalar *val; 3878965ea79SLois Curfman McInnes 3883a40ed3dSBarry Smith PetscFunctionBegin; 389910cf402Sprj- if (!mdn->donotstash && !mat->nooffprocentries) { 3908965ea79SLois Curfman McInnes /* wait on receives */ 3917ef1d9bdSSatish Balay while (1) { 3929566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg)); 3937ef1d9bdSSatish Balay if (!flg) break; 3948965ea79SLois Curfman McInnes 3957ef1d9bdSSatish Balay for (i=0; i<n;) { 3967ef1d9bdSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 3972205254eSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 3982205254eSKarl Rupp if (row[j] != rstart) break; 3992205254eSKarl Rupp } 4007ef1d9bdSSatish Balay if (j < n) ncols = j-i; 4017ef1d9bdSSatish Balay else ncols = n-i; 4027ef1d9bdSSatish Balay /* Now assemble all these values with a single function call */ 4039566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,mat->insertmode)); 4047ef1d9bdSSatish Balay i = j; 4058965ea79SLois Curfman McInnes } 4067ef1d9bdSSatish Balay } 4079566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 408910cf402Sprj- } 4098965ea79SLois Curfman McInnes 4109566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mdn->A,mode)); 4119566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mdn->A,mode)); 4123a40ed3dSBarry Smith PetscFunctionReturn(0); 4138965ea79SLois Curfman McInnes } 4148965ea79SLois Curfman McInnes 415dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIDense(Mat A) 4168965ea79SLois Curfman McInnes { 41739ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 4183a40ed3dSBarry Smith 4193a40ed3dSBarry Smith PetscFunctionBegin; 4209566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 4213a40ed3dSBarry Smith PetscFunctionReturn(0); 4228965ea79SLois Curfman McInnes } 4238965ea79SLois Curfman McInnes 424637a0070SStefano Zampini PetscErrorCode MatZeroRows_MPIDense(Mat A,PetscInt n,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 4258965ea79SLois Curfman McInnes { 42639ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 427637a0070SStefano Zampini PetscInt i,len,*lrows; 428637a0070SStefano Zampini 429637a0070SStefano Zampini PetscFunctionBegin; 430637a0070SStefano Zampini /* get locally owned rows */ 4319566063dSJacob Faibussowitsch PetscCall(PetscLayoutMapLocal(A->rmap,n,rows,&len,&lrows,NULL)); 432637a0070SStefano Zampini /* fix right hand side if needed */ 433637a0070SStefano Zampini if (x && b) { 43497b48c8fSBarry Smith const PetscScalar *xx; 43597b48c8fSBarry Smith PetscScalar *bb; 4368965ea79SLois Curfman McInnes 4379566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 4389566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(b, &bb)); 439637a0070SStefano Zampini for (i=0;i<len;++i) bb[lrows[i]] = diag*xx[lrows[i]]; 4409566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 4419566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(b, &bb)); 44297b48c8fSBarry Smith } 4439566063dSJacob Faibussowitsch PetscCall(MatZeroRows(l->A,len,lrows,0.0,NULL,NULL)); 444e2eb51b1SBarry Smith if (diag != 0.0) { 445637a0070SStefano Zampini Vec d; 446b9679d65SBarry Smith 4479566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(A,NULL,&d)); 4489566063dSJacob Faibussowitsch PetscCall(VecSet(d,diag)); 4499566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet(A,d,INSERT_VALUES)); 4509566063dSJacob Faibussowitsch PetscCall(VecDestroy(&d)); 451b9679d65SBarry Smith } 4529566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 4533a40ed3dSBarry Smith PetscFunctionReturn(0); 4548965ea79SLois Curfman McInnes } 4558965ea79SLois Curfman McInnes 456cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMult_SeqDense(Mat,Vec,Vec); 457cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultAdd_SeqDense(Mat,Vec,Vec,Vec); 458cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTranspose_SeqDense(Mat,Vec,Vec); 459cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTransposeAdd_SeqDense(Mat,Vec,Vec,Vec); 460cc2e6a90SBarry Smith 461dfbe8321SBarry Smith PetscErrorCode MatMult_MPIDense(Mat mat,Vec xx,Vec yy) 4628965ea79SLois Curfman McInnes { 46339ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 464637a0070SStefano Zampini const PetscScalar *ax; 465637a0070SStefano Zampini PetscScalar *ay; 466d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 467c456f294SBarry Smith 4683a40ed3dSBarry Smith PetscFunctionBegin; 4696f08ad05SPierre Jolivet if (!mdn->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(mat)); 4709566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(xx,&ax,&axmtype)); 4719566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(mdn->lvec,&ay,&aymtype)); 4729566063dSJacob Faibussowitsch PetscCall(PetscSFBcastWithMemTypeBegin(mdn->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPI_REPLACE)); 4739566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ax,ay,MPI_REPLACE)); 4749566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(mdn->lvec,&ay)); 4759566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(xx,&ax)); 4769566063dSJacob Faibussowitsch PetscCall((*mdn->A->ops->mult)(mdn->A,mdn->lvec,yy)); 4773a40ed3dSBarry Smith PetscFunctionReturn(0); 4788965ea79SLois Curfman McInnes } 4798965ea79SLois Curfman McInnes 480dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz) 4818965ea79SLois Curfman McInnes { 48239ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 483637a0070SStefano Zampini const PetscScalar *ax; 484637a0070SStefano Zampini PetscScalar *ay; 485d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 486c456f294SBarry Smith 4873a40ed3dSBarry Smith PetscFunctionBegin; 4886f08ad05SPierre Jolivet if (!mdn->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(mat)); 4899566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(xx,&ax,&axmtype)); 4909566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(mdn->lvec,&ay,&aymtype)); 4919566063dSJacob Faibussowitsch PetscCall(PetscSFBcastWithMemTypeBegin(mdn->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPI_REPLACE)); 4929566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ax,ay,MPI_REPLACE)); 4939566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(mdn->lvec,&ay)); 4949566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(xx,&ax)); 4959566063dSJacob Faibussowitsch PetscCall((*mdn->A->ops->multadd)(mdn->A,mdn->lvec,yy,zz)); 4963a40ed3dSBarry Smith PetscFunctionReturn(0); 4978965ea79SLois Curfman McInnes } 4988965ea79SLois Curfman McInnes 499dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIDense(Mat A,Vec xx,Vec yy) 500096963f5SLois Curfman McInnes { 501096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 502637a0070SStefano Zampini const PetscScalar *ax; 503637a0070SStefano Zampini PetscScalar *ay; 504d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 505096963f5SLois Curfman McInnes 5063a40ed3dSBarry Smith PetscFunctionBegin; 5076f08ad05SPierre Jolivet if (!a->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); 5089566063dSJacob Faibussowitsch PetscCall(VecSet(yy,0.0)); 5099566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A,xx,a->lvec)); 5109566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(a->lvec,&ax,&axmtype)); 5119566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(yy,&ay,&aymtype)); 5129566063dSJacob Faibussowitsch PetscCall(PetscSFReduceWithMemTypeBegin(a->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPIU_SUM)); 5139566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM)); 5149566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(a->lvec,&ax)); 5159566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(yy,&ay)); 5163a40ed3dSBarry Smith PetscFunctionReturn(0); 517096963f5SLois Curfman McInnes } 518096963f5SLois Curfman McInnes 519dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz) 520096963f5SLois Curfman McInnes { 521096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 522637a0070SStefano Zampini const PetscScalar *ax; 523637a0070SStefano Zampini PetscScalar *ay; 524d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 525096963f5SLois Curfman McInnes 5263a40ed3dSBarry Smith PetscFunctionBegin; 5276f08ad05SPierre Jolivet if (!a->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); 5289566063dSJacob Faibussowitsch PetscCall(VecCopy(yy,zz)); 5299566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A,xx,a->lvec)); 5309566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(a->lvec,&ax,&axmtype)); 5319566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(zz,&ay,&aymtype)); 5329566063dSJacob Faibussowitsch PetscCall(PetscSFReduceWithMemTypeBegin(a->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPIU_SUM)); 5339566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM)); 5349566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(a->lvec,&ax)); 5359566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(zz,&ay)); 5363a40ed3dSBarry Smith PetscFunctionReturn(0); 537096963f5SLois Curfman McInnes } 538096963f5SLois Curfman McInnes 539dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIDense(Mat A,Vec v) 5408965ea79SLois Curfman McInnes { 54139ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 542637a0070SStefano Zampini PetscInt lda,len,i,n,m = A->rmap->n,radd; 54387828ca2SBarry Smith PetscScalar *x,zero = 0.0; 544637a0070SStefano Zampini const PetscScalar *av; 545ed3cc1f0SBarry Smith 5463a40ed3dSBarry Smith PetscFunctionBegin; 5479566063dSJacob Faibussowitsch PetscCall(VecSet(v,zero)); 5489566063dSJacob Faibussowitsch PetscCall(VecGetArray(v,&x)); 5499566063dSJacob Faibussowitsch PetscCall(VecGetSize(v,&n)); 55008401ef6SPierre Jolivet PetscCheck(n == A->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec"); 551d0f46423SBarry Smith len = PetscMin(a->A->rmap->n,a->A->cmap->n); 552d0f46423SBarry Smith radd = A->rmap->rstart*m; 5539566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A,&av)); 5549566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 55544cd7ae7SLois Curfman McInnes for (i=0; i<len; i++) { 556637a0070SStefano Zampini x[i] = av[radd + i*lda + i]; 557096963f5SLois Curfman McInnes } 5589566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A,&av)); 5599566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v,&x)); 5603a40ed3dSBarry Smith PetscFunctionReturn(0); 5618965ea79SLois Curfman McInnes } 5628965ea79SLois Curfman McInnes 563dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIDense(Mat mat) 5648965ea79SLois Curfman McInnes { 5653501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 566ed3cc1f0SBarry Smith 5673a40ed3dSBarry Smith PetscFunctionBegin; 568aa482453SBarry Smith #if defined(PETSC_USE_LOG) 569c0aa6a63SJacob Faibussowitsch PetscLogObjectState((PetscObject)mat,"Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT,mat->rmap->N,mat->cmap->N); 5708965ea79SLois Curfman McInnes #endif 5719566063dSJacob Faibussowitsch PetscCall(MatStashDestroy_Private(&mat->stash)); 57228b400f6SJacob Faibussowitsch PetscCheck(!mdn->vecinuse,PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 57328b400f6SJacob Faibussowitsch PetscCheck(!mdn->matinuse,PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 5749566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mdn->A)); 5759566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mdn->lvec)); 5769566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&mdn->Mvctx)); 5779566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mdn->cvec)); 5789566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mdn->cmat)); 57901b82886SBarry Smith 5809566063dSJacob Faibussowitsch PetscCall(PetscFree(mat->data)); 5819566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)mat,NULL)); 5828baccfbdSHong Zhang 5839566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",NULL)); 5849566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseSetLDA_C",NULL)); 5859566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",NULL)); 5869566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",NULL)); 5879566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",NULL)); 5889566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",NULL)); 5899566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayWrite_C",NULL)); 5909566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayWrite_C",NULL)); 5919566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",NULL)); 5929566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",NULL)); 5939566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseReplaceArray_C",NULL)); 5949566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpiaij_mpidense_C",NULL)); 5959566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_mpiaij_C",NULL)); 5968baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 5979566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",NULL)); 5988baccfbdSHong Zhang #endif 599d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 6009566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_scalapack_C",NULL)); 601d24d4204SJose E. Roman #endif 6029566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",NULL)); 6039566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaij_mpidense_C",NULL)); 6049566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaij_C",NULL)); 6056718818eSStefano Zampini #if defined (PETSC_HAVE_CUDA) 6069566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaijcusparse_mpidense_C",NULL)); 6079566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaijcusparse_C",NULL)); 6086718818eSStefano Zampini #endif 6099566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",NULL)); 6109566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",NULL)); 6119566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",NULL)); 6129566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",NULL)); 6139566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",NULL)); 6149566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",NULL)); 6159566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",NULL)); 6169566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",NULL)); 6179566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetSubMatrix_C",NULL)); 6189566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreSubMatrix_C",NULL)); 6193a40ed3dSBarry Smith PetscFunctionReturn(0); 6208965ea79SLois Curfman McInnes } 62139ddd567SLois Curfman McInnes 62252c5f739Sprj- PETSC_INTERN PetscErrorCode MatView_SeqDense(Mat,PetscViewer); 62352c5f739Sprj- 6249804daf3SBarry Smith #include <petscdraw.h> 6256849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 6268965ea79SLois Curfman McInnes { 62739ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 628616b8fbbSStefano Zampini PetscMPIInt rank; 62919fd82e9SBarry Smith PetscViewerType vtype; 630ace3abfcSBarry Smith PetscBool iascii,isdraw; 631b0a32e0cSBarry Smith PetscViewer sviewer; 632f3ef73ceSBarry Smith PetscViewerFormat format; 6338965ea79SLois Curfman McInnes 6343a40ed3dSBarry Smith PetscFunctionBegin; 6359566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank)); 6369566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii)); 6379566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw)); 63832077d6dSBarry Smith if (iascii) { 6399566063dSJacob Faibussowitsch PetscCall(PetscViewerGetType(viewer,&vtype)); 6409566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer,&format)); 641456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 6424e220ebcSLois Curfman McInnes MatInfo info; 6439566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat,MAT_LOCAL,&info)); 6449566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 6459566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer," [%d] local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %" PetscInt_FMT " \n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory)); 6469566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 6479566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 6486f08ad05SPierre Jolivet if (mdn->Mvctx) PetscCall(PetscSFView(mdn->Mvctx,viewer)); 6493a40ed3dSBarry Smith PetscFunctionReturn(0); 650fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 6513a40ed3dSBarry Smith PetscFunctionReturn(0); 6528965ea79SLois Curfman McInnes } 653f1af5d2fSBarry Smith } else if (isdraw) { 654b0a32e0cSBarry Smith PetscDraw draw; 655ace3abfcSBarry Smith PetscBool isnull; 656f1af5d2fSBarry Smith 6579566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer,0,&draw)); 6589566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw,&isnull)); 659f1af5d2fSBarry Smith if (isnull) PetscFunctionReturn(0); 660f1af5d2fSBarry Smith } 66177ed5343SBarry Smith 6627da1fb6eSBarry Smith { 6638965ea79SLois Curfman McInnes /* assemble the entire matrix onto first processor. */ 6648965ea79SLois Curfman McInnes Mat A; 665d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,m,row,i,nz; 666ba8c8a56SBarry Smith PetscInt *cols; 667ba8c8a56SBarry Smith PetscScalar *vals; 6688965ea79SLois Curfman McInnes 6699566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat),&A)); 670dd400576SPatrick Sanan if (rank == 0) { 6719566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A,M,N,M,N)); 6723a40ed3dSBarry Smith } else { 6739566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A,0,0,M,N)); 6748965ea79SLois Curfman McInnes } 6757adad957SLisandro Dalcin /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */ 6769566063dSJacob Faibussowitsch PetscCall(MatSetType(A,MATMPIDENSE)); 6779566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(A,NULL)); 6789566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)A)); 6798965ea79SLois Curfman McInnes 68039ddd567SLois Curfman McInnes /* Copy the matrix ... This isn't the most efficient means, 68139ddd567SLois Curfman McInnes but it's quick for now */ 68251022da4SBarry Smith A->insertmode = INSERT_VALUES; 6832205254eSKarl Rupp 6842205254eSKarl Rupp row = mat->rmap->rstart; 6852205254eSKarl Rupp m = mdn->A->rmap->n; 6868965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 6879566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIDense(mat,row,&nz,&cols,&vals)); 6889566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIDense(A,1,&row,nz,cols,vals,INSERT_VALUES)); 6899566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIDense(mat,row,&nz,&cols,&vals)); 69039ddd567SLois Curfman McInnes row++; 6918965ea79SLois Curfman McInnes } 6928965ea79SLois Curfman McInnes 6939566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY)); 6949566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY)); 6959566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer)); 696dd400576SPatrick Sanan if (rank == 0) { 6979566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)((Mat_MPIDense*)(A->data))->A,((PetscObject)mat)->name)); 6989566063dSJacob Faibussowitsch PetscCall(MatView_SeqDense(((Mat_MPIDense*)(A->data))->A,sviewer)); 6998965ea79SLois Curfman McInnes } 7009566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer)); 7019566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 7029566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 7038965ea79SLois Curfman McInnes } 7043a40ed3dSBarry Smith PetscFunctionReturn(0); 7058965ea79SLois Curfman McInnes } 7068965ea79SLois Curfman McInnes 707dfbe8321SBarry Smith PetscErrorCode MatView_MPIDense(Mat mat,PetscViewer viewer) 7088965ea79SLois Curfman McInnes { 709ace3abfcSBarry Smith PetscBool iascii,isbinary,isdraw,issocket; 7108965ea79SLois Curfman McInnes 711433994e6SBarry Smith PetscFunctionBegin; 7129566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii)); 7139566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary)); 7149566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket)); 7159566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw)); 7160f5bd95cSBarry Smith 71732077d6dSBarry Smith if (iascii || issocket || isdraw) { 7189566063dSJacob Faibussowitsch PetscCall(MatView_MPIDense_ASCIIorDraworSocket(mat,viewer)); 7190f5bd95cSBarry Smith } else if (isbinary) { 7209566063dSJacob Faibussowitsch PetscCall(MatView_Dense_Binary(mat,viewer)); 72111aeaf0aSBarry Smith } 7223a40ed3dSBarry Smith PetscFunctionReturn(0); 7238965ea79SLois Curfman McInnes } 7248965ea79SLois Curfman McInnes 725dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info) 7268965ea79SLois Curfman McInnes { 7273501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 7283501a2bdSLois Curfman McInnes Mat mdn = mat->A; 7293966268fSBarry Smith PetscLogDouble isend[5],irecv[5]; 7308965ea79SLois Curfman McInnes 7313a40ed3dSBarry Smith PetscFunctionBegin; 7324e220ebcSLois Curfman McInnes info->block_size = 1.0; 7332205254eSKarl Rupp 7349566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mdn,MAT_LOCAL,info)); 7352205254eSKarl Rupp 7364e220ebcSLois Curfman McInnes isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 7374e220ebcSLois Curfman McInnes isend[3] = info->memory; isend[4] = info->mallocs; 7388965ea79SLois Curfman McInnes if (flag == MAT_LOCAL) { 7394e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 7404e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 7414e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 7424e220ebcSLois Curfman McInnes info->memory = isend[3]; 7434e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 7448965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 7451c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_MAX,PetscObjectComm((PetscObject)A))); 7462205254eSKarl Rupp 7474e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7484e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7494e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7504e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7514e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7528965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 7531c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_SUM,PetscObjectComm((PetscObject)A))); 7542205254eSKarl Rupp 7554e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7564e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7574e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7584e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7594e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7608965ea79SLois Curfman McInnes } 7614e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 7624e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 7634e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 7643a40ed3dSBarry Smith PetscFunctionReturn(0); 7658965ea79SLois Curfman McInnes } 7668965ea79SLois Curfman McInnes 767ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIDense(Mat A,MatOption op,PetscBool flg) 7688965ea79SLois Curfman McInnes { 76939ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 7708965ea79SLois Curfman McInnes 7713a40ed3dSBarry Smith PetscFunctionBegin; 77212c028f9SKris Buschelman switch (op) { 773512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 77412c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 77512c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 77643674050SBarry Smith MatCheckPreallocated(A,1); 7779566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A,op,flg)); 77812c028f9SKris Buschelman break; 77912c028f9SKris Buschelman case MAT_ROW_ORIENTED: 78043674050SBarry Smith MatCheckPreallocated(A,1); 7814e0d8c25SBarry Smith a->roworiented = flg; 7829566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A,op,flg)); 78312c028f9SKris Buschelman break; 7848c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 78513fa8e87SLisandro Dalcin case MAT_KEEP_NONZERO_PATTERN: 78612c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 787071fcb05SBarry Smith case MAT_SORTED_FULL: 7889566063dSJacob Faibussowitsch PetscCall(PetscInfo(A,"Option %s ignored\n",MatOptions[op])); 78912c028f9SKris Buschelman break; 79012c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 7914e0d8c25SBarry Smith a->donotstash = flg; 79212c028f9SKris Buschelman break; 79377e54ba9SKris Buschelman case MAT_SYMMETRIC: 79477e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 7959a4540c5SBarry Smith case MAT_HERMITIAN: 7969a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 797600fe468SBarry Smith case MAT_IGNORE_LOWER_TRIANGULAR: 7985d7aebe8SStefano Zampini case MAT_IGNORE_ZERO_ENTRIES: 7999566063dSJacob Faibussowitsch PetscCall(PetscInfo(A,"Option %s ignored\n",MatOptions[op])); 80077e54ba9SKris Buschelman break; 80112c028f9SKris Buschelman default: 80298921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %s",MatOptions[op]); 8033a40ed3dSBarry Smith } 8043a40ed3dSBarry Smith PetscFunctionReturn(0); 8058965ea79SLois Curfman McInnes } 8068965ea79SLois Curfman McInnes 807dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIDense(Mat A,Vec ll,Vec rr) 8085b2fa520SLois Curfman McInnes { 8095b2fa520SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 810637a0070SStefano Zampini const PetscScalar *l; 811637a0070SStefano Zampini PetscScalar x,*v,*vv,*r; 812637a0070SStefano Zampini PetscInt i,j,s2a,s3a,s2,s3,m=mdn->A->rmap->n,n=mdn->A->cmap->n,lda; 8135b2fa520SLois Curfman McInnes 8145b2fa520SLois Curfman McInnes PetscFunctionBegin; 8159566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(mdn->A,&vv)); 8169566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(mdn->A,&lda)); 8179566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A,&s2,&s3)); 8185b2fa520SLois Curfman McInnes if (ll) { 8199566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll,&s2a)); 82008401ef6SPierre Jolivet PetscCheck(s2a == s2,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vector non-conforming local size, %" PetscInt_FMT " != %" PetscInt_FMT, s2a, s2); 8219566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(ll,&l)); 8225b2fa520SLois Curfman McInnes for (i=0; i<m; i++) { 8235b2fa520SLois Curfman McInnes x = l[i]; 824637a0070SStefano Zampini v = vv + i; 825637a0070SStefano Zampini for (j=0; j<n; j++) { (*v) *= x; v+= lda;} 8265b2fa520SLois Curfman McInnes } 8279566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(ll,&l)); 8289566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(1.0*n*m)); 8295b2fa520SLois Curfman McInnes } 8305b2fa520SLois Curfman McInnes if (rr) { 831637a0070SStefano Zampini const PetscScalar *ar; 832637a0070SStefano Zampini 8339566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr,&s3a)); 83408401ef6SPierre Jolivet PetscCheck(s3a == s3,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vec non-conforming local size, %" PetscInt_FMT " != %" PetscInt_FMT ".", s3a, s3); 8359566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(rr,&ar)); 8366f08ad05SPierre Jolivet if (!mdn->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); 8379566063dSJacob Faibussowitsch PetscCall(VecGetArray(mdn->lvec,&r)); 8389566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(mdn->Mvctx,MPIU_SCALAR,ar,r,MPI_REPLACE)); 8399566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ar,r,MPI_REPLACE)); 8409566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(rr,&ar)); 8415b2fa520SLois Curfman McInnes for (i=0; i<n; i++) { 8425b2fa520SLois Curfman McInnes x = r[i]; 843637a0070SStefano Zampini v = vv + i*lda; 8442205254eSKarl Rupp for (j=0; j<m; j++) (*v++) *= x; 8455b2fa520SLois Curfman McInnes } 8469566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mdn->lvec,&r)); 8479566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(1.0*n*m)); 8485b2fa520SLois Curfman McInnes } 8499566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(mdn->A,&vv)); 8505b2fa520SLois Curfman McInnes PetscFunctionReturn(0); 8515b2fa520SLois Curfman McInnes } 8525b2fa520SLois Curfman McInnes 853dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIDense(Mat A,NormType type,PetscReal *nrm) 854096963f5SLois Curfman McInnes { 8553501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 85613f74950SBarry Smith PetscInt i,j; 857616b8fbbSStefano Zampini PetscMPIInt size; 858329f5518SBarry Smith PetscReal sum = 0.0; 859637a0070SStefano Zampini const PetscScalar *av,*v; 8603501a2bdSLois Curfman McInnes 8613a40ed3dSBarry Smith PetscFunctionBegin; 8629566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(mdn->A,&av)); 863637a0070SStefano Zampini v = av; 8649566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A),&size)); 865616b8fbbSStefano Zampini if (size == 1) { 8669566063dSJacob Faibussowitsch PetscCall(MatNorm(mdn->A,type,nrm)); 8673501a2bdSLois Curfman McInnes } else { 8683501a2bdSLois Curfman McInnes if (type == NORM_FROBENIUS) { 869d0f46423SBarry Smith for (i=0; i<mdn->A->cmap->n*mdn->A->rmap->n; i++) { 870329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 8713501a2bdSLois Curfman McInnes } 8721c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A))); 8738f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 8749566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0*mdn->A->cmap->n*mdn->A->rmap->n)); 8753a40ed3dSBarry Smith } else if (type == NORM_1) { 876329f5518SBarry Smith PetscReal *tmp,*tmp2; 8779566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(A->cmap->N,&tmp,A->cmap->N,&tmp2)); 878064f8208SBarry Smith *nrm = 0.0; 879637a0070SStefano Zampini v = av; 880d0f46423SBarry Smith for (j=0; j<mdn->A->cmap->n; j++) { 881d0f46423SBarry Smith for (i=0; i<mdn->A->rmap->n; i++) { 88267e560aaSBarry Smith tmp[j] += PetscAbsScalar(*v); v++; 8833501a2bdSLois Curfman McInnes } 8843501a2bdSLois Curfman McInnes } 8851c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(tmp,tmp2,A->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A))); 886d0f46423SBarry Smith for (j=0; j<A->cmap->N; j++) { 887064f8208SBarry Smith if (tmp2[j] > *nrm) *nrm = tmp2[j]; 8883501a2bdSLois Curfman McInnes } 8899566063dSJacob Faibussowitsch PetscCall(PetscFree2(tmp,tmp2)); 8909566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(A->cmap->n*A->rmap->n)); 8913a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 892329f5518SBarry Smith PetscReal ntemp; 8939566063dSJacob Faibussowitsch PetscCall(MatNorm(mdn->A,type,&ntemp)); 8941c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&ntemp,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A))); 895ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"No support for two norm"); 8963501a2bdSLois Curfman McInnes } 8979566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(mdn->A,&av)); 8983a40ed3dSBarry Smith PetscFunctionReturn(0); 8993501a2bdSLois Curfman McInnes } 9003501a2bdSLois Curfman McInnes 901fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIDense(Mat A,MatReuse reuse,Mat *matout) 9023501a2bdSLois Curfman McInnes { 9033501a2bdSLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 9043501a2bdSLois Curfman McInnes Mat B; 905d0f46423SBarry Smith PetscInt M = A->rmap->N,N = A->cmap->N,m,n,*rwork,rstart = A->rmap->rstart; 906637a0070SStefano Zampini PetscInt j,i,lda; 90787828ca2SBarry Smith PetscScalar *v; 9083501a2bdSLois Curfman McInnes 9093a40ed3dSBarry Smith PetscFunctionBegin; 910cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 9119566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&B)); 9129566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B,A->cmap->n,A->rmap->n,N,M)); 9139566063dSJacob Faibussowitsch PetscCall(MatSetType(B,((PetscObject)A)->type_name)); 9149566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(B,NULL)); 915637a0070SStefano Zampini } else B = *matout; 9163501a2bdSLois Curfman McInnes 917637a0070SStefano Zampini m = a->A->rmap->n; n = a->A->cmap->n; 9189566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A,(const PetscScalar**)&v)); 9199566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 9209566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m,&rwork)); 9213501a2bdSLois Curfman McInnes for (i=0; i<m; i++) rwork[i] = rstart + i; 9221acff37aSSatish Balay for (j=0; j<n; j++) { 9239566063dSJacob Faibussowitsch PetscCall(MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES)); 924637a0070SStefano Zampini v += lda; 9253501a2bdSLois Curfman McInnes } 9269566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A,(const PetscScalar**)&v)); 9279566063dSJacob Faibussowitsch PetscCall(PetscFree(rwork)); 9289566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY)); 9299566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY)); 930cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) { 9313501a2bdSLois Curfman McInnes *matout = B; 9323501a2bdSLois Curfman McInnes } else { 9339566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(A,&B)); 9343501a2bdSLois Curfman McInnes } 9353a40ed3dSBarry Smith PetscFunctionReturn(0); 936096963f5SLois Curfman McInnes } 937096963f5SLois Curfman McInnes 9386849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat*); 93952c5f739Sprj- PETSC_INTERN PetscErrorCode MatScale_MPIDense(Mat,PetscScalar); 9408965ea79SLois Curfman McInnes 9414994cf47SJed Brown PetscErrorCode MatSetUp_MPIDense(Mat A) 942273d9f13SBarry Smith { 943273d9f13SBarry Smith PetscFunctionBegin; 9449566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->rmap)); 9459566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->cmap)); 94618992e5dSStefano Zampini if (!A->preallocated) { 9479566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(A,NULL)); 94818992e5dSStefano Zampini } 949273d9f13SBarry Smith PetscFunctionReturn(0); 950273d9f13SBarry Smith } 951273d9f13SBarry Smith 952488007eeSBarry Smith PetscErrorCode MatAXPY_MPIDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str) 953488007eeSBarry Smith { 954488007eeSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)Y->data, *B = (Mat_MPIDense*)X->data; 955488007eeSBarry Smith 956488007eeSBarry Smith PetscFunctionBegin; 9579566063dSJacob Faibussowitsch PetscCall(MatAXPY(A->A,alpha,B->A,str)); 958488007eeSBarry Smith PetscFunctionReturn(0); 959488007eeSBarry Smith } 960488007eeSBarry Smith 9617087cfbeSBarry Smith PetscErrorCode MatConjugate_MPIDense(Mat mat) 962ba337c44SJed Brown { 963ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)mat->data; 964ba337c44SJed Brown 965ba337c44SJed Brown PetscFunctionBegin; 9669566063dSJacob Faibussowitsch PetscCall(MatConjugate(a->A)); 967ba337c44SJed Brown PetscFunctionReturn(0); 968ba337c44SJed Brown } 969ba337c44SJed Brown 970ba337c44SJed Brown PetscErrorCode MatRealPart_MPIDense(Mat A) 971ba337c44SJed Brown { 972ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 973ba337c44SJed Brown 974ba337c44SJed Brown PetscFunctionBegin; 9759566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 976ba337c44SJed Brown PetscFunctionReturn(0); 977ba337c44SJed Brown } 978ba337c44SJed Brown 979ba337c44SJed Brown PetscErrorCode MatImaginaryPart_MPIDense(Mat A) 980ba337c44SJed Brown { 981ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 982ba337c44SJed Brown 983ba337c44SJed Brown PetscFunctionBegin; 9849566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 985ba337c44SJed Brown PetscFunctionReturn(0); 986ba337c44SJed Brown } 987ba337c44SJed Brown 98849a6ff4bSBarry Smith static PetscErrorCode MatGetColumnVector_MPIDense(Mat A,Vec v,PetscInt col) 98949a6ff4bSBarry Smith { 990637a0070SStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*) A->data; 99149a6ff4bSBarry Smith 99249a6ff4bSBarry Smith PetscFunctionBegin; 99328b400f6SJacob Faibussowitsch PetscCheck(a->A,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Missing local matrix"); 99428b400f6SJacob Faibussowitsch PetscCheck(a->A->ops->getcolumnvector,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Missing get column operation"); 9959566063dSJacob Faibussowitsch PetscCall((*a->A->ops->getcolumnvector)(a->A,v,col)); 99649a6ff4bSBarry Smith PetscFunctionReturn(0); 99749a6ff4bSBarry Smith } 99849a6ff4bSBarry Smith 999857cbf51SRichard Tran Mills PETSC_INTERN PetscErrorCode MatGetColumnReductions_SeqDense(Mat,PetscInt,PetscReal*); 100052c5f739Sprj- 1001857cbf51SRichard Tran Mills PetscErrorCode MatGetColumnReductions_MPIDense(Mat A,PetscInt type,PetscReal *reductions) 10020716a85fSBarry Smith { 1003a873a8cdSSam Reynolds PetscInt i,m,n; 10040716a85fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*) A->data; 10050716a85fSBarry Smith PetscReal *work; 10060716a85fSBarry Smith 10070716a85fSBarry Smith PetscFunctionBegin; 10089566063dSJacob Faibussowitsch PetscCall(MatGetSize(A,&m,&n)); 10099566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n,&work)); 1010857cbf51SRichard Tran Mills if (type == REDUCTION_MEAN_REALPART) { 10119566063dSJacob Faibussowitsch PetscCall(MatGetColumnReductions_SeqDense(a->A,(PetscInt)REDUCTION_SUM_REALPART,work)); 1012857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_IMAGINARYPART) { 10139566063dSJacob Faibussowitsch PetscCall(MatGetColumnReductions_SeqDense(a->A,(PetscInt)REDUCTION_SUM_IMAGINARYPART,work)); 1014a873a8cdSSam Reynolds } else { 10159566063dSJacob Faibussowitsch PetscCall(MatGetColumnReductions_SeqDense(a->A,type,work)); 1016a873a8cdSSam Reynolds } 1017857cbf51SRichard Tran Mills if (type == NORM_2) { 10180716a85fSBarry Smith for (i=0; i<n; i++) work[i] *= work[i]; 10190716a85fSBarry Smith } 1020857cbf51SRichard Tran Mills if (type == NORM_INFINITY) { 10211c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work,reductions,n,MPIU_REAL,MPIU_MAX,A->hdr.comm)); 10220716a85fSBarry Smith } else { 10231c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work,reductions,n,MPIU_REAL,MPIU_SUM,A->hdr.comm)); 10240716a85fSBarry Smith } 10259566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 1026857cbf51SRichard Tran Mills if (type == NORM_2) { 1027a873a8cdSSam Reynolds for (i=0; i<n; i++) reductions[i] = PetscSqrtReal(reductions[i]); 1028857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 1029a873a8cdSSam Reynolds for (i=0; i<n; i++) reductions[i] /= m; 10300716a85fSBarry Smith } 10310716a85fSBarry Smith PetscFunctionReturn(0); 10320716a85fSBarry Smith } 10330716a85fSBarry Smith 1034637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1035*126e4e93SJose E. Roman PetscErrorCode MatShift_MPIDenseCUDA(Mat A,PetscScalar alpha) 1036*126e4e93SJose E. Roman { 1037*126e4e93SJose E. Roman PetscScalar *da; 1038*126e4e93SJose E. Roman PetscInt lda; 1039*126e4e93SJose E. Roman 1040*126e4e93SJose E. Roman PetscFunctionBegin; 1041*126e4e93SJose E. Roman PetscCall(MatDenseCUDAGetArray(A,&da)); 1042*126e4e93SJose E. Roman PetscCall(MatDenseGetLDA(A,&lda)); 1043*126e4e93SJose E. Roman PetscCall(PetscInfo(A,"Performing Shift on backend\n")); 1044*126e4e93SJose E. Roman PetscCall(MatShift_DenseCUDA_Private(da,alpha,lda,A->rmap->rstart,A->rmap->rend,A->cmap->N)); 1045*126e4e93SJose E. Roman PetscCall(MatDenseCUDARestoreArray(A,&da)); 1046*126e4e93SJose E. Roman PetscFunctionReturn(0); 1047*126e4e93SJose E. Roman } 1048*126e4e93SJose E. Roman 10496947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVec_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10506947451fSStefano Zampini { 10516947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10526947451fSStefano Zampini PetscInt lda; 10536947451fSStefano Zampini 10546947451fSStefano Zampini PetscFunctionBegin; 105528b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 105628b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 10576947451fSStefano Zampini if (!a->cvec) { 10589566063dSJacob Faibussowitsch PetscCall(VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 10599566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec)); 10606947451fSStefano Zampini } 10616947451fSStefano Zampini a->vecinuse = col + 1; 10629566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 10639566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArray(a->A,(PetscScalar**)&a->ptrinuse)); 10649566063dSJacob Faibussowitsch PetscCall(VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 10656947451fSStefano Zampini *v = a->cvec; 10666947451fSStefano Zampini PetscFunctionReturn(0); 10676947451fSStefano Zampini } 10686947451fSStefano Zampini 10696947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVec_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10706947451fSStefano Zampini { 10716947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10726947451fSStefano Zampini 10736947451fSStefano Zampini PetscFunctionBegin; 107428b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 107528b400f6SJacob Faibussowitsch PetscCheck(a->cvec,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector"); 10766947451fSStefano Zampini a->vecinuse = 0; 10779566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArray(a->A,(PetscScalar**)&a->ptrinuse)); 10789566063dSJacob Faibussowitsch PetscCall(VecCUDAResetArray(a->cvec)); 10796947451fSStefano Zampini *v = NULL; 10806947451fSStefano Zampini PetscFunctionReturn(0); 10816947451fSStefano Zampini } 10826947451fSStefano Zampini 10836947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecRead_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10846947451fSStefano Zampini { 10856947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10866947451fSStefano Zampini PetscInt lda; 10876947451fSStefano Zampini 10886947451fSStefano Zampini PetscFunctionBegin; 108928b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 109028b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 10916947451fSStefano Zampini if (!a->cvec) { 10929566063dSJacob Faibussowitsch PetscCall(VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 10939566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec)); 10946947451fSStefano Zampini } 10956947451fSStefano Zampini a->vecinuse = col + 1; 10969566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 10979566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArrayRead(a->A,&a->ptrinuse)); 10989566063dSJacob Faibussowitsch PetscCall(VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 10999566063dSJacob Faibussowitsch PetscCall(VecLockReadPush(a->cvec)); 11006947451fSStefano Zampini *v = a->cvec; 11016947451fSStefano Zampini PetscFunctionReturn(0); 11026947451fSStefano Zampini } 11036947451fSStefano Zampini 11046947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecRead_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 11056947451fSStefano Zampini { 11066947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 11076947451fSStefano Zampini 11086947451fSStefano Zampini PetscFunctionBegin; 110928b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 111028b400f6SJacob Faibussowitsch PetscCheck(a->cvec,PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 11116947451fSStefano Zampini a->vecinuse = 0; 11129566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArrayRead(a->A,&a->ptrinuse)); 11139566063dSJacob Faibussowitsch PetscCall(VecLockReadPop(a->cvec)); 11149566063dSJacob Faibussowitsch PetscCall(VecCUDAResetArray(a->cvec)); 11156947451fSStefano Zampini *v = NULL; 11166947451fSStefano Zampini PetscFunctionReturn(0); 11176947451fSStefano Zampini } 11186947451fSStefano Zampini 11196947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecWrite_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 11206947451fSStefano Zampini { 11216947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 11226947451fSStefano Zampini PetscInt lda; 11236947451fSStefano Zampini 11246947451fSStefano Zampini PetscFunctionBegin; 112528b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 112628b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 11276947451fSStefano Zampini if (!a->cvec) { 11289566063dSJacob Faibussowitsch PetscCall(VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 11299566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec)); 11306947451fSStefano Zampini } 11316947451fSStefano Zampini a->vecinuse = col + 1; 11329566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 11339566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArrayWrite(a->A,(PetscScalar**)&a->ptrinuse)); 11349566063dSJacob Faibussowitsch PetscCall(VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 11356947451fSStefano Zampini *v = a->cvec; 11366947451fSStefano Zampini PetscFunctionReturn(0); 11376947451fSStefano Zampini } 11386947451fSStefano Zampini 11396947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 11406947451fSStefano Zampini { 11416947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 11426947451fSStefano Zampini 11436947451fSStefano Zampini PetscFunctionBegin; 114428b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 114528b400f6SJacob Faibussowitsch PetscCheck(a->cvec,PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 11466947451fSStefano Zampini a->vecinuse = 0; 11479566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArrayWrite(a->A,(PetscScalar**)&a->ptrinuse)); 11489566063dSJacob Faibussowitsch PetscCall(VecCUDAResetArray(a->cvec)); 11496947451fSStefano Zampini *v = NULL; 11506947451fSStefano Zampini PetscFunctionReturn(0); 11516947451fSStefano Zampini } 11526947451fSStefano Zampini 1153637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAPlaceArray_MPIDenseCUDA(Mat A, const PetscScalar *a) 1154637a0070SStefano Zampini { 1155637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1156637a0070SStefano Zampini 1157637a0070SStefano Zampini PetscFunctionBegin; 115828b400f6SJacob Faibussowitsch PetscCheck(!l->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 115928b400f6SJacob Faibussowitsch PetscCheck(!l->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 11609566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAPlaceArray(l->A,a)); 1161637a0070SStefano Zampini PetscFunctionReturn(0); 1162637a0070SStefano Zampini } 1163637a0070SStefano Zampini 1164637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAResetArray_MPIDenseCUDA(Mat A) 1165637a0070SStefano Zampini { 1166637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1167637a0070SStefano Zampini 1168637a0070SStefano Zampini PetscFunctionBegin; 116928b400f6SJacob Faibussowitsch PetscCheck(!l->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 117028b400f6SJacob Faibussowitsch PetscCheck(!l->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 11719566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAResetArray(l->A)); 1172637a0070SStefano Zampini PetscFunctionReturn(0); 1173637a0070SStefano Zampini } 1174637a0070SStefano Zampini 1175d5ea218eSStefano Zampini static PetscErrorCode MatDenseCUDAReplaceArray_MPIDenseCUDA(Mat A, const PetscScalar *a) 1176d5ea218eSStefano Zampini { 1177d5ea218eSStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1178d5ea218eSStefano Zampini 1179d5ea218eSStefano Zampini PetscFunctionBegin; 118028b400f6SJacob Faibussowitsch PetscCheck(!l->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 118128b400f6SJacob Faibussowitsch PetscCheck(!l->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 11829566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAReplaceArray(l->A,a)); 1183d5ea218eSStefano Zampini PetscFunctionReturn(0); 1184d5ea218eSStefano Zampini } 1185d5ea218eSStefano Zampini 1186637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArrayWrite_MPIDenseCUDA(Mat A, PetscScalar **a) 1187637a0070SStefano Zampini { 1188637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1189637a0070SStefano Zampini 1190637a0070SStefano Zampini PetscFunctionBegin; 11919566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArrayWrite(l->A,a)); 1192637a0070SStefano Zampini PetscFunctionReturn(0); 1193637a0070SStefano Zampini } 1194637a0070SStefano Zampini 1195637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArrayWrite_MPIDenseCUDA(Mat A, PetscScalar **a) 1196637a0070SStefano Zampini { 1197637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1198637a0070SStefano Zampini 1199637a0070SStefano Zampini PetscFunctionBegin; 12009566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArrayWrite(l->A,a)); 1201637a0070SStefano Zampini PetscFunctionReturn(0); 1202637a0070SStefano Zampini } 1203637a0070SStefano Zampini 1204637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArrayRead_MPIDenseCUDA(Mat A, const PetscScalar **a) 1205637a0070SStefano Zampini { 1206637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1207637a0070SStefano Zampini 1208637a0070SStefano Zampini PetscFunctionBegin; 12099566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArrayRead(l->A,a)); 1210637a0070SStefano Zampini PetscFunctionReturn(0); 1211637a0070SStefano Zampini } 1212637a0070SStefano Zampini 1213637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArrayRead_MPIDenseCUDA(Mat A, const PetscScalar **a) 1214637a0070SStefano Zampini { 1215637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1216637a0070SStefano Zampini 1217637a0070SStefano Zampini PetscFunctionBegin; 12189566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArrayRead(l->A,a)); 1219637a0070SStefano Zampini PetscFunctionReturn(0); 1220637a0070SStefano Zampini } 1221637a0070SStefano Zampini 1222637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArray_MPIDenseCUDA(Mat A, PetscScalar **a) 1223637a0070SStefano Zampini { 1224637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1225637a0070SStefano Zampini 1226637a0070SStefano Zampini PetscFunctionBegin; 12279566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArray(l->A,a)); 1228637a0070SStefano Zampini PetscFunctionReturn(0); 1229637a0070SStefano Zampini } 1230637a0070SStefano Zampini 1231637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArray_MPIDenseCUDA(Mat A, PetscScalar **a) 1232637a0070SStefano Zampini { 1233637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1234637a0070SStefano Zampini 1235637a0070SStefano Zampini PetscFunctionBegin; 12369566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArray(l->A,a)); 1237637a0070SStefano Zampini PetscFunctionReturn(0); 1238637a0070SStefano Zampini } 1239637a0070SStefano Zampini 12406947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecWrite_MPIDense(Mat,PetscInt,Vec*); 12416947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecRead_MPIDense(Mat,PetscInt,Vec*); 12426947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVec_MPIDense(Mat,PetscInt,Vec*); 12436947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDense(Mat,PetscInt,Vec*); 12446947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecRead_MPIDense(Mat,PetscInt,Vec*); 12456947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVec_MPIDense(Mat,PetscInt,Vec*); 12465ea7661aSPierre Jolivet static PetscErrorCode MatDenseRestoreSubMatrix_MPIDense(Mat,Mat*); 12476947451fSStefano Zampini 1248637a0070SStefano Zampini static PetscErrorCode MatBindToCPU_MPIDenseCUDA(Mat mat,PetscBool bind) 1249637a0070SStefano Zampini { 1250637a0070SStefano Zampini Mat_MPIDense *d = (Mat_MPIDense*)mat->data; 1251637a0070SStefano Zampini 1252637a0070SStefano Zampini PetscFunctionBegin; 125328b400f6SJacob Faibussowitsch PetscCheck(!d->vecinuse,PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 125428b400f6SJacob Faibussowitsch PetscCheck(!d->matinuse,PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1255637a0070SStefano Zampini if (d->A) { 12569566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(d->A,bind)); 1257637a0070SStefano Zampini } 1258637a0070SStefano Zampini mat->boundtocpu = bind; 12596947451fSStefano Zampini if (!bind) { 12606947451fSStefano Zampini PetscBool iscuda; 12616947451fSStefano Zampini 12629566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)d->cvec,VECMPICUDA,&iscuda)); 12636947451fSStefano Zampini if (!iscuda) { 12649566063dSJacob Faibussowitsch PetscCall(VecDestroy(&d->cvec)); 1265616b8fbbSStefano Zampini } 12669566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)d->cmat,MATMPIDENSECUDA,&iscuda)); 1267616b8fbbSStefano Zampini if (!iscuda) { 12689566063dSJacob Faibussowitsch PetscCall(MatDestroy(&d->cmat)); 12696947451fSStefano Zampini } 12709566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDenseCUDA)); 12719566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDenseCUDA)); 12729566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDenseCUDA)); 12739566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDenseCUDA)); 12749566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDenseCUDA)); 12759566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDenseCUDA)); 1276*126e4e93SJose E. Roman mat->ops->shift = MatShift_MPIDenseCUDA; 12776947451fSStefano Zampini } else { 12789566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDense)); 12799566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDense)); 12809566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDense)); 12819566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDense)); 12829566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDense)); 12839566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDense)); 1284*126e4e93SJose E. Roman mat->ops->shift = MatShift_MPIDense; 1285616b8fbbSStefano Zampini } 1286616b8fbbSStefano Zampini if (d->cmat) { 12879566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(d->cmat,bind)); 12886947451fSStefano Zampini } 1289637a0070SStefano Zampini PetscFunctionReturn(0); 1290637a0070SStefano Zampini } 1291637a0070SStefano Zampini 1292637a0070SStefano Zampini PetscErrorCode MatMPIDenseCUDASetPreallocation(Mat A, PetscScalar *d_data) 1293637a0070SStefano Zampini { 1294637a0070SStefano Zampini Mat_MPIDense *d = (Mat_MPIDense*)A->data; 1295637a0070SStefano Zampini PetscBool iscuda; 1296637a0070SStefano Zampini 1297637a0070SStefano Zampini PetscFunctionBegin; 1298d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 12999566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A,MATMPIDENSECUDA,&iscuda)); 1300637a0070SStefano Zampini if (!iscuda) PetscFunctionReturn(0); 13019566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->rmap)); 13029566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->cmap)); 1303637a0070SStefano Zampini if (!d->A) { 13049566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF,&d->A)); 13059566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)d->A)); 13069566063dSJacob Faibussowitsch PetscCall(MatSetSizes(d->A,A->rmap->n,A->cmap->N,A->rmap->n,A->cmap->N)); 1307637a0070SStefano Zampini } 13089566063dSJacob Faibussowitsch PetscCall(MatSetType(d->A,MATSEQDENSECUDA)); 13099566063dSJacob Faibussowitsch PetscCall(MatSeqDenseCUDASetPreallocation(d->A,d_data)); 1310637a0070SStefano Zampini A->preallocated = PETSC_TRUE; 13116f08ad05SPierre Jolivet A->assembled = PETSC_TRUE; 1312637a0070SStefano Zampini PetscFunctionReturn(0); 1313637a0070SStefano Zampini } 1314637a0070SStefano Zampini #endif 1315637a0070SStefano Zampini 131673a71a0fSBarry Smith static PetscErrorCode MatSetRandom_MPIDense(Mat x,PetscRandom rctx) 131773a71a0fSBarry Smith { 131873a71a0fSBarry Smith Mat_MPIDense *d = (Mat_MPIDense*)x->data; 131973a71a0fSBarry Smith 132073a71a0fSBarry Smith PetscFunctionBegin; 13219566063dSJacob Faibussowitsch PetscCall(MatSetRandom(d->A,rctx)); 132273a71a0fSBarry Smith PetscFunctionReturn(0); 132373a71a0fSBarry Smith } 132473a71a0fSBarry Smith 13253b49f96aSBarry Smith static PetscErrorCode MatMissingDiagonal_MPIDense(Mat A,PetscBool *missing,PetscInt *d) 13263b49f96aSBarry Smith { 13273b49f96aSBarry Smith PetscFunctionBegin; 13283b49f96aSBarry Smith *missing = PETSC_FALSE; 13293b49f96aSBarry Smith PetscFunctionReturn(0); 13303b49f96aSBarry Smith } 13313b49f96aSBarry Smith 13324222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat,Mat,PetscReal,Mat); 1333cc48ffa7SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat,Mat,Mat); 13346718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat,Mat,PetscReal,Mat); 1335a1f9a5e6SStefano Zampini static PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat,Mat,Mat); 13366718818eSStefano Zampini static PetscErrorCode MatEqual_MPIDense(Mat,Mat,PetscBool*); 13376718818eSStefano Zampini static PetscErrorCode MatLoad_MPIDense(Mat,PetscViewer); 1338cc48ffa7SToby Isaac 13398965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/ 134009dc0095SBarry Smith static struct _MatOps MatOps_Values = { MatSetValues_MPIDense, 134109dc0095SBarry Smith MatGetRow_MPIDense, 134209dc0095SBarry Smith MatRestoreRow_MPIDense, 134309dc0095SBarry Smith MatMult_MPIDense, 134497304618SKris Buschelman /* 4*/ MatMultAdd_MPIDense, 13457c922b88SBarry Smith MatMultTranspose_MPIDense, 13467c922b88SBarry Smith MatMultTransposeAdd_MPIDense, 1347f4259b30SLisandro Dalcin NULL, 1348f4259b30SLisandro Dalcin NULL, 1349f4259b30SLisandro Dalcin NULL, 1350f4259b30SLisandro Dalcin /* 10*/ NULL, 1351f4259b30SLisandro Dalcin NULL, 1352f4259b30SLisandro Dalcin NULL, 1353f4259b30SLisandro Dalcin NULL, 135409dc0095SBarry Smith MatTranspose_MPIDense, 135597304618SKris Buschelman /* 15*/ MatGetInfo_MPIDense, 13566e4ee0c6SHong Zhang MatEqual_MPIDense, 135709dc0095SBarry Smith MatGetDiagonal_MPIDense, 13585b2fa520SLois Curfman McInnes MatDiagonalScale_MPIDense, 135909dc0095SBarry Smith MatNorm_MPIDense, 136097304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPIDense, 136109dc0095SBarry Smith MatAssemblyEnd_MPIDense, 136209dc0095SBarry Smith MatSetOption_MPIDense, 136309dc0095SBarry Smith MatZeroEntries_MPIDense, 1364d519adbfSMatthew Knepley /* 24*/ MatZeroRows_MPIDense, 1365f4259b30SLisandro Dalcin NULL, 1366f4259b30SLisandro Dalcin NULL, 1367f4259b30SLisandro Dalcin NULL, 1368f4259b30SLisandro Dalcin NULL, 13694994cf47SJed Brown /* 29*/ MatSetUp_MPIDense, 1370f4259b30SLisandro Dalcin NULL, 1371f4259b30SLisandro Dalcin NULL, 1372c56a70eeSBarry Smith MatGetDiagonalBlock_MPIDense, 1373f4259b30SLisandro Dalcin NULL, 1374d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPIDense, 1375f4259b30SLisandro Dalcin NULL, 1376f4259b30SLisandro Dalcin NULL, 1377f4259b30SLisandro Dalcin NULL, 1378f4259b30SLisandro Dalcin NULL, 1379d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPIDense, 13807dae84e0SHong Zhang MatCreateSubMatrices_MPIDense, 1381f4259b30SLisandro Dalcin NULL, 138209dc0095SBarry Smith MatGetValues_MPIDense, 1383a76f77c3SStefano Zampini MatCopy_MPIDense, 1384f4259b30SLisandro Dalcin /* 44*/ NULL, 138509dc0095SBarry Smith MatScale_MPIDense, 13862f605a99SJose E. Roman MatShift_MPIDense, 1387f4259b30SLisandro Dalcin NULL, 1388f4259b30SLisandro Dalcin NULL, 138973a71a0fSBarry Smith /* 49*/ MatSetRandom_MPIDense, 1390f4259b30SLisandro Dalcin NULL, 1391f4259b30SLisandro Dalcin NULL, 1392f4259b30SLisandro Dalcin NULL, 1393f4259b30SLisandro Dalcin NULL, 1394f4259b30SLisandro Dalcin /* 54*/ NULL, 1395f4259b30SLisandro Dalcin NULL, 1396f4259b30SLisandro Dalcin NULL, 1397f4259b30SLisandro Dalcin NULL, 1398f4259b30SLisandro Dalcin NULL, 13997dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPIDense, 1400b9b97703SBarry Smith MatDestroy_MPIDense, 1401b9b97703SBarry Smith MatView_MPIDense, 1402f4259b30SLisandro Dalcin NULL, 1403f4259b30SLisandro Dalcin NULL, 1404f4259b30SLisandro Dalcin /* 64*/ NULL, 1405f4259b30SLisandro Dalcin NULL, 1406f4259b30SLisandro Dalcin NULL, 1407f4259b30SLisandro Dalcin NULL, 1408f4259b30SLisandro Dalcin NULL, 1409f4259b30SLisandro Dalcin /* 69*/ NULL, 1410f4259b30SLisandro Dalcin NULL, 1411f4259b30SLisandro Dalcin NULL, 1412f4259b30SLisandro Dalcin NULL, 1413f4259b30SLisandro Dalcin NULL, 1414f4259b30SLisandro Dalcin /* 74*/ NULL, 1415f4259b30SLisandro Dalcin NULL, 1416f4259b30SLisandro Dalcin NULL, 1417f4259b30SLisandro Dalcin NULL, 1418f4259b30SLisandro Dalcin NULL, 1419f4259b30SLisandro Dalcin /* 79*/ NULL, 1420f4259b30SLisandro Dalcin NULL, 1421f4259b30SLisandro Dalcin NULL, 1422f4259b30SLisandro Dalcin NULL, 14235bba2384SShri Abhyankar /* 83*/ MatLoad_MPIDense, 1424f4259b30SLisandro Dalcin NULL, 1425f4259b30SLisandro Dalcin NULL, 1426f4259b30SLisandro Dalcin NULL, 1427f4259b30SLisandro Dalcin NULL, 1428f4259b30SLisandro Dalcin NULL, 1429f4259b30SLisandro Dalcin /* 89*/ NULL, 1430f4259b30SLisandro Dalcin NULL, 1431f4259b30SLisandro Dalcin NULL, 1432f4259b30SLisandro Dalcin NULL, 1433f4259b30SLisandro Dalcin NULL, 1434f4259b30SLisandro Dalcin /* 94*/ NULL, 1435f4259b30SLisandro Dalcin NULL, 14366718818eSStefano Zampini MatMatTransposeMultSymbolic_MPIDense_MPIDense, 1437cc48ffa7SToby Isaac MatMatTransposeMultNumeric_MPIDense_MPIDense, 1438f4259b30SLisandro Dalcin NULL, 14394222ddf1SHong Zhang /* 99*/ MatProductSetFromOptions_MPIDense, 1440f4259b30SLisandro Dalcin NULL, 1441f4259b30SLisandro Dalcin NULL, 1442ba337c44SJed Brown MatConjugate_MPIDense, 1443f4259b30SLisandro Dalcin NULL, 1444f4259b30SLisandro Dalcin /*104*/ NULL, 1445ba337c44SJed Brown MatRealPart_MPIDense, 1446ba337c44SJed Brown MatImaginaryPart_MPIDense, 1447f4259b30SLisandro Dalcin NULL, 1448f4259b30SLisandro Dalcin NULL, 1449f4259b30SLisandro Dalcin /*109*/ NULL, 1450f4259b30SLisandro Dalcin NULL, 1451f4259b30SLisandro Dalcin NULL, 145249a6ff4bSBarry Smith MatGetColumnVector_MPIDense, 14533b49f96aSBarry Smith MatMissingDiagonal_MPIDense, 1454f4259b30SLisandro Dalcin /*114*/ NULL, 1455f4259b30SLisandro Dalcin NULL, 1456f4259b30SLisandro Dalcin NULL, 1457f4259b30SLisandro Dalcin NULL, 1458f4259b30SLisandro Dalcin NULL, 1459f4259b30SLisandro Dalcin /*119*/ NULL, 1460f4259b30SLisandro Dalcin NULL, 1461f4259b30SLisandro Dalcin NULL, 1462f4259b30SLisandro Dalcin NULL, 1463f4259b30SLisandro Dalcin NULL, 1464f4259b30SLisandro Dalcin /*124*/ NULL, 1465a873a8cdSSam Reynolds MatGetColumnReductions_MPIDense, 1466f4259b30SLisandro Dalcin NULL, 1467f4259b30SLisandro Dalcin NULL, 1468f4259b30SLisandro Dalcin NULL, 1469f4259b30SLisandro Dalcin /*129*/ NULL, 1470f4259b30SLisandro Dalcin NULL, 14716718818eSStefano Zampini MatTransposeMatMultSymbolic_MPIDense_MPIDense, 1472cb20be35SHong Zhang MatTransposeMatMultNumeric_MPIDense_MPIDense, 1473f4259b30SLisandro Dalcin NULL, 1474f4259b30SLisandro Dalcin /*134*/ NULL, 1475f4259b30SLisandro Dalcin NULL, 1476f4259b30SLisandro Dalcin NULL, 1477f4259b30SLisandro Dalcin NULL, 1478f4259b30SLisandro Dalcin NULL, 1479f4259b30SLisandro Dalcin /*139*/ NULL, 1480f4259b30SLisandro Dalcin NULL, 1481f4259b30SLisandro Dalcin NULL, 1482f4259b30SLisandro Dalcin NULL, 1483f4259b30SLisandro Dalcin NULL, 14844222ddf1SHong Zhang MatCreateMPIMatConcatenateSeqMat_MPIDense, 1485f4259b30SLisandro Dalcin /*145*/ NULL, 1486f4259b30SLisandro Dalcin NULL, 1487f4259b30SLisandro Dalcin NULL 1488ba337c44SJed Brown }; 14898965ea79SLois Curfman McInnes 14907087cfbeSBarry Smith PetscErrorCode MatMPIDenseSetPreallocation_MPIDense(Mat mat,PetscScalar *data) 1491a23d5eceSKris Buschelman { 1492637a0070SStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)mat->data; 1493637a0070SStefano Zampini PetscBool iscuda; 1494a23d5eceSKris Buschelman 1495a23d5eceSKris Buschelman PetscFunctionBegin; 149628b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 14979566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 14989566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 1499637a0070SStefano Zampini if (!a->A) { 15009566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF,&a->A)); 15019566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A)); 15029566063dSJacob Faibussowitsch PetscCall(MatSetSizes(a->A,mat->rmap->n,mat->cmap->N,mat->rmap->n,mat->cmap->N)); 1503637a0070SStefano Zampini } 15049566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)mat,MATMPIDENSECUDA,&iscuda)); 15059566063dSJacob Faibussowitsch PetscCall(MatSetType(a->A,iscuda ? MATSEQDENSECUDA : MATSEQDENSE)); 15069566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(a->A,data)); 1507637a0070SStefano Zampini mat->preallocated = PETSC_TRUE; 15086f08ad05SPierre Jolivet mat->assembled = PETSC_TRUE; 1509a23d5eceSKris Buschelman PetscFunctionReturn(0); 1510a23d5eceSKris Buschelman } 1511a23d5eceSKris Buschelman 15124e29119aSPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIDense(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 15134e29119aSPierre Jolivet { 15144e29119aSPierre Jolivet Mat B,C; 15154e29119aSPierre Jolivet 15164e29119aSPierre Jolivet PetscFunctionBegin; 15179566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(A,MAT_INITIAL_MATRIX,&C)); 15189566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqAIJ_SeqDense(C,MATSEQDENSE,MAT_INITIAL_MATRIX,&B)); 15199566063dSJacob Faibussowitsch PetscCall(MatDestroy(&C)); 15204e29119aSPierre Jolivet if (reuse == MAT_REUSE_MATRIX) { 15214e29119aSPierre Jolivet C = *newmat; 15224e29119aSPierre Jolivet } else C = NULL; 15239566063dSJacob Faibussowitsch PetscCall(MatCreateMPIMatConcatenateSeqMat(PetscObjectComm((PetscObject)A),B,A->cmap->n,!C?MAT_INITIAL_MATRIX:MAT_REUSE_MATRIX,&C)); 15249566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 15254e29119aSPierre Jolivet if (reuse == MAT_INPLACE_MATRIX) { 15269566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A,&C)); 15274e29119aSPierre Jolivet } else if (reuse == MAT_INITIAL_MATRIX) *newmat = C; 15284e29119aSPierre Jolivet PetscFunctionReturn(0); 15294e29119aSPierre Jolivet } 15304e29119aSPierre Jolivet 15314e29119aSPierre Jolivet PetscErrorCode MatConvert_MPIDense_MPIAIJ(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 15324e29119aSPierre Jolivet { 15334e29119aSPierre Jolivet Mat B,C; 15344e29119aSPierre Jolivet 15354e29119aSPierre Jolivet PetscFunctionBegin; 15369566063dSJacob Faibussowitsch PetscCall(MatDenseGetLocalMatrix(A,&C)); 15379566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqDense_SeqAIJ(C,MATSEQAIJ,MAT_INITIAL_MATRIX,&B)); 15384e29119aSPierre Jolivet if (reuse == MAT_REUSE_MATRIX) { 15394e29119aSPierre Jolivet C = *newmat; 15404e29119aSPierre Jolivet } else C = NULL; 15419566063dSJacob Faibussowitsch PetscCall(MatCreateMPIMatConcatenateSeqMat(PetscObjectComm((PetscObject)A),B,A->cmap->n,!C?MAT_INITIAL_MATRIX:MAT_REUSE_MATRIX,&C)); 15429566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 15434e29119aSPierre Jolivet if (reuse == MAT_INPLACE_MATRIX) { 15449566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A,&C)); 15454e29119aSPierre Jolivet } else if (reuse == MAT_INITIAL_MATRIX) *newmat = C; 15464e29119aSPierre Jolivet PetscFunctionReturn(0); 15474e29119aSPierre Jolivet } 15484e29119aSPierre Jolivet 154965b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 1550cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIDense_Elemental(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 15518baccfbdSHong Zhang { 15528ea901baSHong Zhang Mat mat_elemental; 155332d7a744SHong Zhang PetscScalar *v; 155432d7a744SHong Zhang PetscInt m=A->rmap->n,N=A->cmap->N,rstart=A->rmap->rstart,i,*rows,*cols; 15558ea901baSHong Zhang 15568baccfbdSHong Zhang PetscFunctionBegin; 1557378336b6SHong Zhang if (reuse == MAT_REUSE_MATRIX) { 1558378336b6SHong Zhang mat_elemental = *newmat; 15599566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(*newmat)); 1560378336b6SHong Zhang } else { 15619566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental)); 15629566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat_elemental,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N)); 15639566063dSJacob Faibussowitsch PetscCall(MatSetType(mat_elemental,MATELEMENTAL)); 15649566063dSJacob Faibussowitsch PetscCall(MatSetUp(mat_elemental)); 15659566063dSJacob Faibussowitsch PetscCall(MatSetOption(mat_elemental,MAT_ROW_ORIENTED,PETSC_FALSE)); 1566378336b6SHong Zhang } 1567378336b6SHong Zhang 15689566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m,&rows,N,&cols)); 156932d7a744SHong Zhang for (i=0; i<N; i++) cols[i] = i; 157032d7a744SHong Zhang for (i=0; i<m; i++) rows[i] = rstart + i; 15718ea901baSHong Zhang 1572637a0070SStefano Zampini /* PETSc-Elemental interface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */ 15739566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(A,&v)); 15749566063dSJacob Faibussowitsch PetscCall(MatSetValues(mat_elemental,m,rows,N,cols,v,ADD_VALUES)); 15759566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY)); 15769566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY)); 15779566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(A,&v)); 15789566063dSJacob Faibussowitsch PetscCall(PetscFree2(rows,cols)); 15798ea901baSHong Zhang 1580511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 15819566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A,&mat_elemental)); 15828ea901baSHong Zhang } else { 15838ea901baSHong Zhang *newmat = mat_elemental; 15848ea901baSHong Zhang } 15858baccfbdSHong Zhang PetscFunctionReturn(0); 15868baccfbdSHong Zhang } 158765b80a83SHong Zhang #endif 15888baccfbdSHong Zhang 1589af53bab2SHong Zhang static PetscErrorCode MatDenseGetColumn_MPIDense(Mat A,PetscInt col,PetscScalar **vals) 159086aefd0dSHong Zhang { 159186aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 159286aefd0dSHong Zhang 159386aefd0dSHong Zhang PetscFunctionBegin; 15949566063dSJacob Faibussowitsch PetscCall(MatDenseGetColumn(mat->A,col,vals)); 159586aefd0dSHong Zhang PetscFunctionReturn(0); 159686aefd0dSHong Zhang } 159786aefd0dSHong Zhang 1598af53bab2SHong Zhang static PetscErrorCode MatDenseRestoreColumn_MPIDense(Mat A,PetscScalar **vals) 159986aefd0dSHong Zhang { 160086aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 160186aefd0dSHong Zhang 160286aefd0dSHong Zhang PetscFunctionBegin; 16039566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreColumn(mat->A,vals)); 160486aefd0dSHong Zhang PetscFunctionReturn(0); 160586aefd0dSHong Zhang } 160686aefd0dSHong Zhang 160794e2cb23SJakub Kruzik PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIDense(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 160894e2cb23SJakub Kruzik { 160994e2cb23SJakub Kruzik Mat_MPIDense *mat; 161094e2cb23SJakub Kruzik PetscInt m,nloc,N; 161194e2cb23SJakub Kruzik 161294e2cb23SJakub Kruzik PetscFunctionBegin; 16139566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat,&m,&N)); 16149566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(inmat,NULL,&nloc)); 161594e2cb23SJakub Kruzik if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 161694e2cb23SJakub Kruzik PetscInt sum; 161794e2cb23SJakub Kruzik 161894e2cb23SJakub Kruzik if (n == PETSC_DECIDE) { 16199566063dSJacob Faibussowitsch PetscCall(PetscSplitOwnership(comm,&n,&N)); 162094e2cb23SJakub Kruzik } 162194e2cb23SJakub Kruzik /* Check sum(n) = N */ 16221c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm)); 162308401ef6SPierre Jolivet PetscCheck(sum == N,PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns %" PetscInt_FMT " != global columns %" PetscInt_FMT,sum,N); 162494e2cb23SJakub Kruzik 16259566063dSJacob Faibussowitsch PetscCall(MatCreateDense(comm,m,n,PETSC_DETERMINE,N,NULL,outmat)); 16269566063dSJacob Faibussowitsch PetscCall(MatSetOption(*outmat,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE)); 162794e2cb23SJakub Kruzik } 162894e2cb23SJakub Kruzik 162994e2cb23SJakub Kruzik /* numeric phase */ 163094e2cb23SJakub Kruzik mat = (Mat_MPIDense*)(*outmat)->data; 16319566063dSJacob Faibussowitsch PetscCall(MatCopy(inmat,mat->A,SAME_NONZERO_PATTERN)); 163294e2cb23SJakub Kruzik PetscFunctionReturn(0); 163394e2cb23SJakub Kruzik } 163494e2cb23SJakub Kruzik 1635637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1636637a0070SStefano Zampini PetscErrorCode MatConvert_MPIDenseCUDA_MPIDense(Mat M,MatType type,MatReuse reuse,Mat *newmat) 1637637a0070SStefano Zampini { 1638637a0070SStefano Zampini Mat B; 1639637a0070SStefano Zampini Mat_MPIDense *m; 1640637a0070SStefano Zampini 1641637a0070SStefano Zampini PetscFunctionBegin; 1642637a0070SStefano Zampini if (reuse == MAT_INITIAL_MATRIX) { 16439566063dSJacob Faibussowitsch PetscCall(MatDuplicate(M,MAT_COPY_VALUES,newmat)); 1644637a0070SStefano Zampini } else if (reuse == MAT_REUSE_MATRIX) { 16459566063dSJacob Faibussowitsch PetscCall(MatCopy(M,*newmat,SAME_NONZERO_PATTERN)); 1646637a0070SStefano Zampini } 1647637a0070SStefano Zampini 1648637a0070SStefano Zampini B = *newmat; 16499566063dSJacob Faibussowitsch PetscCall(MatBindToCPU_MPIDenseCUDA(B,PETSC_TRUE)); 16509566063dSJacob Faibussowitsch PetscCall(PetscFree(B->defaultvectype)); 16519566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(VECSTANDARD,&B->defaultvectype)); 16529566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B,MATMPIDENSE)); 16539566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpidensecuda_mpidense_C",NULL)); 16549566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaij_mpidensecuda_C",NULL)); 16559566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaijcusparse_mpidensecuda_C",NULL)); 16569566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaij_C",NULL)); 16579566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaijcusparse_C",NULL)); 16589566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArray_C",NULL)); 16599566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayRead_C",NULL)); 16609566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayWrite_C",NULL)); 16619566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArray_C",NULL)); 16629566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayRead_C",NULL)); 16639566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayWrite_C",NULL)); 16649566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAPlaceArray_C",NULL)); 16659566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAResetArray_C",NULL)); 16669566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAReplaceArray_C",NULL)); 1667637a0070SStefano Zampini m = (Mat_MPIDense*)(B)->data; 1668637a0070SStefano Zampini if (m->A) { 16699566063dSJacob Faibussowitsch PetscCall(MatConvert(m->A,MATSEQDENSE,MAT_INPLACE_MATRIX,&m->A)); 1670637a0070SStefano Zampini } 1671637a0070SStefano Zampini B->ops->bindtocpu = NULL; 1672637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_CPU; 1673637a0070SStefano Zampini PetscFunctionReturn(0); 1674637a0070SStefano Zampini } 1675637a0070SStefano Zampini 1676637a0070SStefano Zampini PetscErrorCode MatConvert_MPIDense_MPIDenseCUDA(Mat M,MatType type,MatReuse reuse,Mat *newmat) 1677637a0070SStefano Zampini { 1678637a0070SStefano Zampini Mat B; 1679637a0070SStefano Zampini Mat_MPIDense *m; 1680637a0070SStefano Zampini 1681637a0070SStefano Zampini PetscFunctionBegin; 1682637a0070SStefano Zampini if (reuse == MAT_INITIAL_MATRIX) { 16839566063dSJacob Faibussowitsch PetscCall(MatDuplicate(M,MAT_COPY_VALUES,newmat)); 1684637a0070SStefano Zampini } else if (reuse == MAT_REUSE_MATRIX) { 16859566063dSJacob Faibussowitsch PetscCall(MatCopy(M,*newmat,SAME_NONZERO_PATTERN)); 1686637a0070SStefano Zampini } 1687637a0070SStefano Zampini 1688637a0070SStefano Zampini B = *newmat; 16899566063dSJacob Faibussowitsch PetscCall(PetscFree(B->defaultvectype)); 16909566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(VECCUDA,&B->defaultvectype)); 16919566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B,MATMPIDENSECUDA)); 16929566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpidensecuda_mpidense_C", MatConvert_MPIDenseCUDA_MPIDense)); 16939566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaij_mpidensecuda_C", MatProductSetFromOptions_MPIAIJ_MPIDense)); 16949566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaijcusparse_mpidensecuda_C",MatProductSetFromOptions_MPIAIJ_MPIDense)); 16959566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaij_C", MatProductSetFromOptions_MPIDense_MPIAIJ)); 16969566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaijcusparse_C",MatProductSetFromOptions_MPIDense_MPIAIJ)); 16979566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArray_C", MatDenseCUDAGetArray_MPIDenseCUDA)); 16989566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayRead_C", MatDenseCUDAGetArrayRead_MPIDenseCUDA)); 16999566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayWrite_C", MatDenseCUDAGetArrayWrite_MPIDenseCUDA)); 17009566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArray_C", MatDenseCUDARestoreArray_MPIDenseCUDA)); 17019566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayRead_C", MatDenseCUDARestoreArrayRead_MPIDenseCUDA)); 17029566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayWrite_C", MatDenseCUDARestoreArrayWrite_MPIDenseCUDA)); 17039566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAPlaceArray_C", MatDenseCUDAPlaceArray_MPIDenseCUDA)); 17049566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAResetArray_C", MatDenseCUDAResetArray_MPIDenseCUDA)); 17059566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAReplaceArray_C", MatDenseCUDAReplaceArray_MPIDenseCUDA)); 1706f5ff9c66SStefano Zampini m = (Mat_MPIDense*)(B->data); 1707637a0070SStefano Zampini if (m->A) { 17089566063dSJacob Faibussowitsch PetscCall(MatConvert(m->A,MATSEQDENSECUDA,MAT_INPLACE_MATRIX,&m->A)); 1709637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_BOTH; 1710637a0070SStefano Zampini } else { 1711637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_UNALLOCATED; 1712637a0070SStefano Zampini } 17139566063dSJacob Faibussowitsch PetscCall(MatBindToCPU_MPIDenseCUDA(B,PETSC_FALSE)); 1714637a0070SStefano Zampini 1715637a0070SStefano Zampini B->ops->bindtocpu = MatBindToCPU_MPIDenseCUDA; 1716637a0070SStefano Zampini PetscFunctionReturn(0); 1717637a0070SStefano Zampini } 1718637a0070SStefano Zampini #endif 1719637a0070SStefano Zampini 17206947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVec_MPIDense(Mat A,PetscInt col,Vec *v) 17216947451fSStefano Zampini { 17226947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17236947451fSStefano Zampini PetscInt lda; 17246947451fSStefano Zampini 17256947451fSStefano Zampini PetscFunctionBegin; 172628b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 172728b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 17286947451fSStefano Zampini if (!a->cvec) { 17299566063dSJacob Faibussowitsch PetscCall(VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 17306947451fSStefano Zampini } 17316947451fSStefano Zampini a->vecinuse = col + 1; 17329566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 17339566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(a->A,(PetscScalar**)&a->ptrinuse)); 17349566063dSJacob Faibussowitsch PetscCall(VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 17356947451fSStefano Zampini *v = a->cvec; 17366947451fSStefano Zampini PetscFunctionReturn(0); 17376947451fSStefano Zampini } 17386947451fSStefano Zampini 17396947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVec_MPIDense(Mat A,PetscInt col,Vec *v) 17406947451fSStefano Zampini { 17416947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17426947451fSStefano Zampini 17436947451fSStefano Zampini PetscFunctionBegin; 174428b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 174528b400f6SJacob Faibussowitsch PetscCheck(a->cvec,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector"); 17466947451fSStefano Zampini a->vecinuse = 0; 17479566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(a->A,(PetscScalar**)&a->ptrinuse)); 17489566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 17496947451fSStefano Zampini *v = NULL; 17506947451fSStefano Zampini PetscFunctionReturn(0); 17516947451fSStefano Zampini } 17526947451fSStefano Zampini 17536947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecRead_MPIDense(Mat A,PetscInt col,Vec *v) 17546947451fSStefano Zampini { 17556947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17566947451fSStefano Zampini PetscInt lda; 17576947451fSStefano Zampini 17586947451fSStefano Zampini PetscFunctionBegin; 175928b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 176028b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 17616947451fSStefano Zampini if (!a->cvec) { 17629566063dSJacob Faibussowitsch PetscCall(VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 17636947451fSStefano Zampini } 17646947451fSStefano Zampini a->vecinuse = col + 1; 17659566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 17669566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A,&a->ptrinuse)); 17679566063dSJacob Faibussowitsch PetscCall(VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 17689566063dSJacob Faibussowitsch PetscCall(VecLockReadPush(a->cvec)); 17696947451fSStefano Zampini *v = a->cvec; 17706947451fSStefano Zampini PetscFunctionReturn(0); 17716947451fSStefano Zampini } 17726947451fSStefano Zampini 17736947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecRead_MPIDense(Mat A,PetscInt col,Vec *v) 17746947451fSStefano Zampini { 17756947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17766947451fSStefano Zampini 17776947451fSStefano Zampini PetscFunctionBegin; 17785f80ce2aSJacob Faibussowitsch PetscCheck(a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 17795f80ce2aSJacob Faibussowitsch PetscCheck(a->cvec,PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 17806947451fSStefano Zampini a->vecinuse = 0; 17819566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A,&a->ptrinuse)); 17829566063dSJacob Faibussowitsch PetscCall(VecLockReadPop(a->cvec)); 17839566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 17846947451fSStefano Zampini *v = NULL; 17856947451fSStefano Zampini PetscFunctionReturn(0); 17866947451fSStefano Zampini } 17876947451fSStefano Zampini 17886947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecWrite_MPIDense(Mat A,PetscInt col,Vec *v) 17896947451fSStefano Zampini { 17906947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17916947451fSStefano Zampini PetscInt lda; 17926947451fSStefano Zampini 17936947451fSStefano Zampini PetscFunctionBegin; 17945f80ce2aSJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 17955f80ce2aSJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 17966947451fSStefano Zampini if (!a->cvec) { 17979566063dSJacob Faibussowitsch PetscCall(VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 17986947451fSStefano Zampini } 17996947451fSStefano Zampini a->vecinuse = col + 1; 18009566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 18019566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(a->A,(PetscScalar**)&a->ptrinuse)); 18029566063dSJacob Faibussowitsch PetscCall(VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 18036947451fSStefano Zampini *v = a->cvec; 18046947451fSStefano Zampini PetscFunctionReturn(0); 18056947451fSStefano Zampini } 18066947451fSStefano Zampini 18076947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDense(Mat A,PetscInt col,Vec *v) 18086947451fSStefano Zampini { 18096947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 18106947451fSStefano Zampini 18116947451fSStefano Zampini PetscFunctionBegin; 18125f80ce2aSJacob Faibussowitsch PetscCheck(a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 18135f80ce2aSJacob Faibussowitsch PetscCheck(a->cvec,PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 18146947451fSStefano Zampini a->vecinuse = 0; 18159566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(a->A,(PetscScalar**)&a->ptrinuse)); 18169566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 18176947451fSStefano Zampini *v = NULL; 18186947451fSStefano Zampini PetscFunctionReturn(0); 18196947451fSStefano Zampini } 18206947451fSStefano Zampini 18215ea7661aSPierre Jolivet PetscErrorCode MatDenseGetSubMatrix_MPIDense(Mat A,PetscInt cbegin,PetscInt cend,Mat *v) 18225ea7661aSPierre Jolivet { 18235ea7661aSPierre Jolivet Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1824616b8fbbSStefano Zampini Mat_MPIDense *c; 1825616b8fbbSStefano Zampini MPI_Comm comm; 18265ea7661aSPierre Jolivet 18275ea7661aSPierre Jolivet PetscFunctionBegin; 18289566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A,&comm)); 18295f80ce2aSJacob Faibussowitsch PetscCheck(!a->vecinuse,comm,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 18305f80ce2aSJacob Faibussowitsch PetscCheck(!a->matinuse,comm,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 18315ea7661aSPierre Jolivet if (!a->cmat) { 18329566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,&a->cmat)); 18339566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)a->cmat)); 18349566063dSJacob Faibussowitsch PetscCall(MatSetType(a->cmat,((PetscObject)A)->type_name)); 18359566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->rmap,&a->cmat->rmap)); 18369566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(a->cmat->cmap,cend-cbegin)); 18379566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(a->cmat->cmap)); 1838616b8fbbSStefano Zampini } else if (cend-cbegin != a->cmat->cmap->N) { 18399566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&a->cmat->cmap)); 18409566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm,&a->cmat->cmap)); 18419566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(a->cmat->cmap,cend-cbegin)); 18429566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(a->cmat->cmap)); 18435ea7661aSPierre Jolivet } 1844616b8fbbSStefano Zampini c = (Mat_MPIDense*)a->cmat->data; 18455f80ce2aSJacob Faibussowitsch PetscCheck(!c->A,comm,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 18469566063dSJacob Faibussowitsch PetscCall(MatDenseGetSubMatrix(a->A,cbegin,cend,&c->A)); 1847616b8fbbSStefano Zampini a->cmat->preallocated = PETSC_TRUE; 1848616b8fbbSStefano Zampini a->cmat->assembled = PETSC_TRUE; 18495ea7661aSPierre Jolivet a->matinuse = cbegin + 1; 18505ea7661aSPierre Jolivet *v = a->cmat; 18515ea7661aSPierre Jolivet PetscFunctionReturn(0); 18525ea7661aSPierre Jolivet } 18535ea7661aSPierre Jolivet 18545ea7661aSPierre Jolivet PetscErrorCode MatDenseRestoreSubMatrix_MPIDense(Mat A,Mat *v) 18555ea7661aSPierre Jolivet { 18565ea7661aSPierre Jolivet Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1857616b8fbbSStefano Zampini Mat_MPIDense *c; 18585ea7661aSPierre Jolivet 18595ea7661aSPierre Jolivet PetscFunctionBegin; 18605f80ce2aSJacob Faibussowitsch PetscCheck(a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetSubMatrix() first"); 18615f80ce2aSJacob Faibussowitsch PetscCheck(a->cmat,PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal matrix"); 18625f80ce2aSJacob Faibussowitsch PetscCheck(*v == a->cmat,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Not the matrix obtained from MatDenseGetSubMatrix()"); 18635ea7661aSPierre Jolivet a->matinuse = 0; 1864616b8fbbSStefano Zampini c = (Mat_MPIDense*)a->cmat->data; 18659566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreSubMatrix(a->A,&c->A)); 18665ea7661aSPierre Jolivet *v = NULL; 18675ea7661aSPierre Jolivet PetscFunctionReturn(0); 18685ea7661aSPierre Jolivet } 18695ea7661aSPierre Jolivet 1870002bc6daSRichard Tran Mills /*MC 1871002bc6daSRichard Tran Mills MATMPIDENSE - MATMPIDENSE = "mpidense" - A matrix type to be used for distributed dense matrices. 1872002bc6daSRichard Tran Mills 1873002bc6daSRichard Tran Mills Options Database Keys: 1874002bc6daSRichard Tran Mills . -mat_type mpidense - sets the matrix type to "mpidense" during a call to MatSetFromOptions() 1875002bc6daSRichard Tran Mills 1876002bc6daSRichard Tran Mills Level: beginner 1877002bc6daSRichard Tran Mills 1878db781477SPatrick Sanan .seealso: `MatCreateDense()` 1879002bc6daSRichard Tran Mills 1880002bc6daSRichard Tran Mills M*/ 18818cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIDense(Mat mat) 1882273d9f13SBarry Smith { 1883273d9f13SBarry Smith Mat_MPIDense *a; 1884273d9f13SBarry Smith 1885273d9f13SBarry Smith PetscFunctionBegin; 18869566063dSJacob Faibussowitsch PetscCall(PetscNewLog(mat,&a)); 1887b0a32e0cSBarry Smith mat->data = (void*)a; 18889566063dSJacob Faibussowitsch PetscCall(PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps))); 1889273d9f13SBarry Smith 1890273d9f13SBarry Smith mat->insertmode = NOT_SET_VALUES; 1891273d9f13SBarry Smith 1892273d9f13SBarry Smith /* build cache for off array entries formed */ 1893273d9f13SBarry Smith a->donotstash = PETSC_FALSE; 18942205254eSKarl Rupp 18959566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)mat),1,&mat->stash)); 1896273d9f13SBarry Smith 1897273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 1898f4259b30SLisandro Dalcin a->lvec = NULL; 1899f4259b30SLisandro Dalcin a->Mvctx = NULL; 1900273d9f13SBarry Smith a->roworiented = PETSC_TRUE; 1901273d9f13SBarry Smith 19029566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",MatDenseGetLDA_MPIDense)); 19039566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseSetLDA_C",MatDenseSetLDA_MPIDense)); 19049566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",MatDenseGetArray_MPIDense)); 19059566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",MatDenseRestoreArray_MPIDense)); 19069566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",MatDenseGetArrayRead_MPIDense)); 19079566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",MatDenseRestoreArrayRead_MPIDense)); 19089566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayWrite_C",MatDenseGetArrayWrite_MPIDense)); 19099566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayWrite_C",MatDenseRestoreArrayWrite_MPIDense)); 19109566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",MatDensePlaceArray_MPIDense)); 19119566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",MatDenseResetArray_MPIDense)); 19129566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseReplaceArray_C",MatDenseReplaceArray_MPIDense)); 19139566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDense)); 19149566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDense)); 19159566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDense)); 19169566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDense)); 19179566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDense)); 19189566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDense)); 19199566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetSubMatrix_C",MatDenseGetSubMatrix_MPIDense)); 19209566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreSubMatrix_C",MatDenseRestoreSubMatrix_MPIDense)); 19219566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpiaij_mpidense_C",MatConvert_MPIAIJ_MPIDense)); 19229566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_mpiaij_C",MatConvert_MPIDense_MPIAIJ)); 19238baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 19249566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",MatConvert_MPIDense_Elemental)); 19258baccfbdSHong Zhang #endif 1926d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 19279566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_scalapack_C",MatConvert_Dense_ScaLAPACK)); 1928d24d4204SJose E. Roman #endif 1929637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 19309566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_mpidensecuda_C",MatConvert_MPIDense_MPIDenseCUDA)); 1931637a0070SStefano Zampini #endif 19329566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",MatMPIDenseSetPreallocation_MPIDense)); 19339566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaij_mpidense_C",MatProductSetFromOptions_MPIAIJ_MPIDense)); 19349566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaij_C",MatProductSetFromOptions_MPIDense_MPIAIJ)); 19356718818eSStefano Zampini #if defined(PETSC_HAVE_CUDA) 19369566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaijcusparse_mpidense_C",MatProductSetFromOptions_MPIAIJ_MPIDense)); 19379566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaijcusparse_C",MatProductSetFromOptions_MPIDense_MPIAIJ)); 19386718818eSStefano Zampini #endif 19398949adfdSHong Zhang 19409566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",MatDenseGetColumn_MPIDense)); 19419566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",MatDenseRestoreColumn_MPIDense)); 19429566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)mat,MATMPIDENSE)); 1943273d9f13SBarry Smith PetscFunctionReturn(0); 1944273d9f13SBarry Smith } 1945273d9f13SBarry Smith 1946209238afSKris Buschelman /*MC 1947637a0070SStefano Zampini MATMPIDENSECUDA - MATMPIDENSECUDA = "mpidensecuda" - A matrix type to be used for distributed dense matrices on GPUs. 1948637a0070SStefano Zampini 1949637a0070SStefano Zampini Options Database Keys: 1950637a0070SStefano Zampini . -mat_type mpidensecuda - sets the matrix type to "mpidensecuda" during a call to MatSetFromOptions() 1951637a0070SStefano Zampini 1952637a0070SStefano Zampini Level: beginner 1953637a0070SStefano Zampini 1954637a0070SStefano Zampini .seealso: 1955637a0070SStefano Zampini 1956637a0070SStefano Zampini M*/ 1957637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1958a4af0ceeSJacob Faibussowitsch #include <petsc/private/deviceimpl.h> 1959637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreate_MPIDenseCUDA(Mat B) 1960637a0070SStefano Zampini { 1961637a0070SStefano Zampini PetscFunctionBegin; 19629566063dSJacob Faibussowitsch PetscCall(PetscDeviceInitialize(PETSC_DEVICE_CUDA)); 19639566063dSJacob Faibussowitsch PetscCall(MatCreate_MPIDense(B)); 19649566063dSJacob Faibussowitsch PetscCall(MatConvert_MPIDense_MPIDenseCUDA(B,MATMPIDENSECUDA,MAT_INPLACE_MATRIX,&B)); 1965637a0070SStefano Zampini PetscFunctionReturn(0); 1966637a0070SStefano Zampini } 1967637a0070SStefano Zampini #endif 1968637a0070SStefano Zampini 1969637a0070SStefano Zampini /*MC 1970002d173eSKris Buschelman MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices. 1971209238afSKris Buschelman 1972209238afSKris Buschelman This matrix type is identical to MATSEQDENSE when constructed with a single process communicator, 1973209238afSKris Buschelman and MATMPIDENSE otherwise. 1974209238afSKris Buschelman 1975209238afSKris Buschelman Options Database Keys: 1976209238afSKris Buschelman . -mat_type dense - sets the matrix type to "dense" during a call to MatSetFromOptions() 1977209238afSKris Buschelman 1978209238afSKris Buschelman Level: beginner 1979209238afSKris Buschelman 1980db781477SPatrick Sanan .seealso: `MATSEQDENSE,MATMPIDENSE,MATDENSECUDA` 19816947451fSStefano Zampini M*/ 19826947451fSStefano Zampini 19836947451fSStefano Zampini /*MC 19846947451fSStefano Zampini MATDENSECUDA - MATDENSECUDA = "densecuda" - A matrix type to be used for dense matrices on GPUs. 19856947451fSStefano Zampini 19866947451fSStefano Zampini This matrix type is identical to MATSEQDENSECUDA when constructed with a single process communicator, 19876947451fSStefano Zampini and MATMPIDENSECUDA otherwise. 19886947451fSStefano Zampini 19896947451fSStefano Zampini Options Database Keys: 19906947451fSStefano Zampini . -mat_type densecuda - sets the matrix type to "densecuda" during a call to MatSetFromOptions() 19916947451fSStefano Zampini 19926947451fSStefano Zampini Level: beginner 19936947451fSStefano Zampini 1994db781477SPatrick Sanan .seealso: `MATSEQDENSECUDA,MATMPIDENSECUDA,MATDENSE` 1995209238afSKris Buschelman M*/ 1996209238afSKris Buschelman 1997273d9f13SBarry Smith /*@C 1998273d9f13SBarry Smith MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries 1999273d9f13SBarry Smith 20008f490ea3SStefano Zampini Collective 2001273d9f13SBarry Smith 2002273d9f13SBarry Smith Input Parameters: 20031c4f3114SJed Brown . B - the matrix 20040298fd71SBarry Smith - data - optional location of matrix data. Set data=NULL for PETSc 2005273d9f13SBarry Smith to control all matrix memory allocation. 2006273d9f13SBarry Smith 2007273d9f13SBarry Smith Notes: 2008273d9f13SBarry Smith The dense format is fully compatible with standard Fortran 77 2009273d9f13SBarry Smith storage by columns. 2010273d9f13SBarry Smith 2011273d9f13SBarry Smith The data input variable is intended primarily for Fortran programmers 2012273d9f13SBarry Smith who wish to allocate their own matrix memory space. Most users should 20130298fd71SBarry Smith set data=NULL. 2014273d9f13SBarry Smith 2015273d9f13SBarry Smith Level: intermediate 2016273d9f13SBarry Smith 2017db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqDense()`, `MatSetValues()` 2018273d9f13SBarry Smith @*/ 20191c4f3114SJed Brown PetscErrorCode MatMPIDenseSetPreallocation(Mat B,PetscScalar *data) 2020273d9f13SBarry Smith { 2021273d9f13SBarry Smith PetscFunctionBegin; 2022d5ea218eSStefano Zampini PetscValidHeaderSpecific(B,MAT_CLASSID,1); 2023cac4c232SBarry Smith PetscTryMethod(B,"MatMPIDenseSetPreallocation_C",(Mat,PetscScalar*),(B,data)); 2024273d9f13SBarry Smith PetscFunctionReturn(0); 2025273d9f13SBarry Smith } 2026273d9f13SBarry Smith 2027d3042a70SBarry Smith /*@ 2028637a0070SStefano Zampini MatDensePlaceArray - Allows one to replace the array in a dense matrix with an 2029d3042a70SBarry Smith array provided by the user. This is useful to avoid copying an array 2030d3042a70SBarry Smith into a matrix 2031d3042a70SBarry Smith 2032d3042a70SBarry Smith Not Collective 2033d3042a70SBarry Smith 2034d3042a70SBarry Smith Input Parameters: 2035d3042a70SBarry Smith + mat - the matrix 2036d3042a70SBarry Smith - array - the array in column major order 2037d3042a70SBarry Smith 2038d3042a70SBarry Smith Notes: 2039d3042a70SBarry Smith You can return to the original array with a call to MatDenseResetArray(). The user is responsible for freeing this array; it will not be 2040d3042a70SBarry Smith freed when the matrix is destroyed. 2041d3042a70SBarry Smith 2042d3042a70SBarry Smith Level: developer 2043d3042a70SBarry Smith 2044db781477SPatrick Sanan .seealso: `MatDenseGetArray()`, `MatDenseResetArray()`, `VecPlaceArray()`, `VecGetArray()`, `VecRestoreArray()`, `VecReplaceArray()`, `VecResetArray()` 2045d3042a70SBarry Smith 2046d3042a70SBarry Smith @*/ 2047637a0070SStefano Zampini PetscErrorCode MatDensePlaceArray(Mat mat,const PetscScalar *array) 2048d3042a70SBarry Smith { 2049d3042a70SBarry Smith PetscFunctionBegin; 2050d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2051cac4c232SBarry Smith PetscUseMethod(mat,"MatDensePlaceArray_C",(Mat,const PetscScalar*),(mat,array)); 20529566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2053637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 2054637a0070SStefano Zampini mat->offloadmask = PETSC_OFFLOAD_CPU; 2055637a0070SStefano Zampini #endif 2056d3042a70SBarry Smith PetscFunctionReturn(0); 2057d3042a70SBarry Smith } 2058d3042a70SBarry Smith 2059d3042a70SBarry Smith /*@ 2060d3042a70SBarry Smith MatDenseResetArray - Resets the matrix array to that it previously had before the call to MatDensePlaceArray() 2061d3042a70SBarry Smith 2062d3042a70SBarry Smith Not Collective 2063d3042a70SBarry Smith 2064d3042a70SBarry Smith Input Parameters: 2065d3042a70SBarry Smith . mat - the matrix 2066d3042a70SBarry Smith 2067d3042a70SBarry Smith Notes: 2068d3042a70SBarry Smith You can only call this after a call to MatDensePlaceArray() 2069d3042a70SBarry Smith 2070d3042a70SBarry Smith Level: developer 2071d3042a70SBarry Smith 2072db781477SPatrick Sanan .seealso: `MatDenseGetArray()`, `MatDensePlaceArray()`, `VecPlaceArray()`, `VecGetArray()`, `VecRestoreArray()`, `VecReplaceArray()`, `VecResetArray()` 2073d3042a70SBarry Smith 2074d3042a70SBarry Smith @*/ 2075d3042a70SBarry Smith PetscErrorCode MatDenseResetArray(Mat mat) 2076d3042a70SBarry Smith { 2077d3042a70SBarry Smith PetscFunctionBegin; 2078d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2079cac4c232SBarry Smith PetscUseMethod(mat,"MatDenseResetArray_C",(Mat),(mat)); 20809566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2081d3042a70SBarry Smith PetscFunctionReturn(0); 2082d3042a70SBarry Smith } 2083d3042a70SBarry Smith 2084d5ea218eSStefano Zampini /*@ 2085d5ea218eSStefano Zampini MatDenseReplaceArray - Allows one to replace the array in a dense matrix with an 2086d5ea218eSStefano Zampini array provided by the user. This is useful to avoid copying an array 2087d5ea218eSStefano Zampini into a matrix 2088d5ea218eSStefano Zampini 2089d5ea218eSStefano Zampini Not Collective 2090d5ea218eSStefano Zampini 2091d5ea218eSStefano Zampini Input Parameters: 2092d5ea218eSStefano Zampini + mat - the matrix 2093d5ea218eSStefano Zampini - array - the array in column major order 2094d5ea218eSStefano Zampini 2095d5ea218eSStefano Zampini Notes: 2096d5ea218eSStefano Zampini The memory passed in MUST be obtained with PetscMalloc() and CANNOT be 2097d5ea218eSStefano Zampini freed by the user. It will be freed when the matrix is destroyed. 2098d5ea218eSStefano Zampini 2099d5ea218eSStefano Zampini Level: developer 2100d5ea218eSStefano Zampini 2101db781477SPatrick Sanan .seealso: `MatDenseGetArray()`, `VecReplaceArray()` 2102d5ea218eSStefano Zampini @*/ 2103d5ea218eSStefano Zampini PetscErrorCode MatDenseReplaceArray(Mat mat,const PetscScalar *array) 2104d5ea218eSStefano Zampini { 2105d5ea218eSStefano Zampini PetscFunctionBegin; 2106d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2107cac4c232SBarry Smith PetscUseMethod(mat,"MatDenseReplaceArray_C",(Mat,const PetscScalar*),(mat,array)); 21089566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2109d5ea218eSStefano Zampini #if defined(PETSC_HAVE_CUDA) 2110d5ea218eSStefano Zampini mat->offloadmask = PETSC_OFFLOAD_CPU; 2111d5ea218eSStefano Zampini #endif 2112d5ea218eSStefano Zampini PetscFunctionReturn(0); 2113d5ea218eSStefano Zampini } 2114d5ea218eSStefano Zampini 2115637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 21168965ea79SLois Curfman McInnes /*@C 2117637a0070SStefano Zampini MatDenseCUDAPlaceArray - Allows one to replace the GPU array in a dense matrix with an 2118637a0070SStefano Zampini array provided by the user. This is useful to avoid copying an array 2119637a0070SStefano Zampini into a matrix 2120637a0070SStefano Zampini 2121637a0070SStefano Zampini Not Collective 2122637a0070SStefano Zampini 2123637a0070SStefano Zampini Input Parameters: 2124637a0070SStefano Zampini + mat - the matrix 2125637a0070SStefano Zampini - array - the array in column major order 2126637a0070SStefano Zampini 2127637a0070SStefano Zampini Notes: 2128637a0070SStefano Zampini You can return to the original array with a call to MatDenseCUDAResetArray(). The user is responsible for freeing this array; it will not be 2129637a0070SStefano Zampini freed when the matrix is destroyed. The array must have been allocated with cudaMalloc(). 2130637a0070SStefano Zampini 2131637a0070SStefano Zampini Level: developer 2132637a0070SStefano Zampini 2133db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDAResetArray()` 2134637a0070SStefano Zampini @*/ 2135637a0070SStefano Zampini PetscErrorCode MatDenseCUDAPlaceArray(Mat mat,const PetscScalar *array) 2136637a0070SStefano Zampini { 2137637a0070SStefano Zampini PetscFunctionBegin; 2138d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2139cac4c232SBarry Smith PetscUseMethod(mat,"MatDenseCUDAPlaceArray_C",(Mat,const PetscScalar*),(mat,array)); 21409566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2141637a0070SStefano Zampini mat->offloadmask = PETSC_OFFLOAD_GPU; 2142637a0070SStefano Zampini PetscFunctionReturn(0); 2143637a0070SStefano Zampini } 2144637a0070SStefano Zampini 2145637a0070SStefano Zampini /*@C 2146637a0070SStefano Zampini MatDenseCUDAResetArray - Resets the matrix array to that it previously had before the call to MatDenseCUDAPlaceArray() 2147637a0070SStefano Zampini 2148637a0070SStefano Zampini Not Collective 2149637a0070SStefano Zampini 2150637a0070SStefano Zampini Input Parameters: 2151637a0070SStefano Zampini . mat - the matrix 2152637a0070SStefano Zampini 2153637a0070SStefano Zampini Notes: 2154637a0070SStefano Zampini You can only call this after a call to MatDenseCUDAPlaceArray() 2155637a0070SStefano Zampini 2156637a0070SStefano Zampini Level: developer 2157637a0070SStefano Zampini 2158db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDAPlaceArray()` 2159637a0070SStefano Zampini 2160637a0070SStefano Zampini @*/ 2161637a0070SStefano Zampini PetscErrorCode MatDenseCUDAResetArray(Mat mat) 2162637a0070SStefano Zampini { 2163637a0070SStefano Zampini PetscFunctionBegin; 2164d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2165cac4c232SBarry Smith PetscUseMethod(mat,"MatDenseCUDAResetArray_C",(Mat),(mat)); 21669566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2167637a0070SStefano Zampini PetscFunctionReturn(0); 2168637a0070SStefano Zampini } 2169637a0070SStefano Zampini 2170637a0070SStefano Zampini /*@C 2171d5ea218eSStefano Zampini MatDenseCUDAReplaceArray - Allows one to replace the GPU array in a dense matrix with an 2172d5ea218eSStefano Zampini array provided by the user. This is useful to avoid copying an array 2173d5ea218eSStefano Zampini into a matrix 2174d5ea218eSStefano Zampini 2175d5ea218eSStefano Zampini Not Collective 2176d5ea218eSStefano Zampini 2177d5ea218eSStefano Zampini Input Parameters: 2178d5ea218eSStefano Zampini + mat - the matrix 2179d5ea218eSStefano Zampini - array - the array in column major order 2180d5ea218eSStefano Zampini 2181d5ea218eSStefano Zampini Notes: 2182d5ea218eSStefano Zampini This permanently replaces the GPU array and frees the memory associated with the old GPU array. 2183d5ea218eSStefano Zampini The memory passed in CANNOT be freed by the user. It will be freed 2184d5ea218eSStefano Zampini when the matrix is destroyed. The array should respect the matrix leading dimension. 2185d5ea218eSStefano Zampini 2186d5ea218eSStefano Zampini Level: developer 2187d5ea218eSStefano Zampini 2188db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDAPlaceArray()`, `MatDenseCUDAResetArray()` 2189d5ea218eSStefano Zampini @*/ 2190d5ea218eSStefano Zampini PetscErrorCode MatDenseCUDAReplaceArray(Mat mat,const PetscScalar *array) 2191d5ea218eSStefano Zampini { 2192d5ea218eSStefano Zampini PetscFunctionBegin; 2193d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2194cac4c232SBarry Smith PetscUseMethod(mat,"MatDenseCUDAReplaceArray_C",(Mat,const PetscScalar*),(mat,array)); 21959566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2196d5ea218eSStefano Zampini mat->offloadmask = PETSC_OFFLOAD_GPU; 2197d5ea218eSStefano Zampini PetscFunctionReturn(0); 2198d5ea218eSStefano Zampini } 2199d5ea218eSStefano Zampini 2200d5ea218eSStefano Zampini /*@C 2201637a0070SStefano Zampini MatDenseCUDAGetArrayWrite - Provides write access to the CUDA buffer inside a dense matrix. 2202637a0070SStefano Zampini 2203637a0070SStefano Zampini Not Collective 2204637a0070SStefano Zampini 2205637a0070SStefano Zampini Input Parameters: 2206637a0070SStefano Zampini . A - the matrix 2207637a0070SStefano Zampini 2208637a0070SStefano Zampini Output Parameters 2209637a0070SStefano Zampini . array - the GPU array in column major order 2210637a0070SStefano Zampini 2211637a0070SStefano Zampini Notes: 2212637a0070SStefano Zampini The data on the GPU may not be updated due to operations done on the CPU. If you need updated data, use MatDenseCUDAGetArray(). The array must be restored with MatDenseCUDARestoreArrayWrite() when no longer needed. 2213637a0070SStefano Zampini 2214637a0070SStefano Zampini Level: developer 2215637a0070SStefano Zampini 2216db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDARestoreArray()`, `MatDenseCUDARestoreArrayWrite()`, `MatDenseCUDAGetArrayRead()`, `MatDenseCUDARestoreArrayRead()` 2217637a0070SStefano Zampini @*/ 2218637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArrayWrite(Mat A, PetscScalar **a) 2219637a0070SStefano Zampini { 2220637a0070SStefano Zampini PetscFunctionBegin; 2221d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2222cac4c232SBarry Smith PetscUseMethod(A,"MatDenseCUDAGetArrayWrite_C",(Mat,PetscScalar**),(A,a)); 22239566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)A)); 2224637a0070SStefano Zampini PetscFunctionReturn(0); 2225637a0070SStefano Zampini } 2226637a0070SStefano Zampini 2227637a0070SStefano Zampini /*@C 2228637a0070SStefano Zampini MatDenseCUDARestoreArrayWrite - Restore write access to the CUDA buffer inside a dense matrix previously obtained with MatDenseCUDAGetArrayWrite(). 2229637a0070SStefano Zampini 2230637a0070SStefano Zampini Not Collective 2231637a0070SStefano Zampini 2232637a0070SStefano Zampini Input Parameters: 2233637a0070SStefano Zampini + A - the matrix 2234637a0070SStefano Zampini - array - the GPU array in column major order 2235637a0070SStefano Zampini 2236637a0070SStefano Zampini Notes: 2237637a0070SStefano Zampini 2238637a0070SStefano Zampini Level: developer 2239637a0070SStefano Zampini 2240db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDARestoreArray()`, `MatDenseCUDAGetArrayWrite()`, `MatDenseCUDARestoreArrayRead()`, `MatDenseCUDAGetArrayRead()` 2241637a0070SStefano Zampini @*/ 2242637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArrayWrite(Mat A, PetscScalar **a) 2243637a0070SStefano Zampini { 2244637a0070SStefano Zampini PetscFunctionBegin; 2245d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2246cac4c232SBarry Smith PetscUseMethod(A,"MatDenseCUDARestoreArrayWrite_C",(Mat,PetscScalar**),(A,a)); 22479566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)A)); 2248637a0070SStefano Zampini A->offloadmask = PETSC_OFFLOAD_GPU; 2249637a0070SStefano Zampini PetscFunctionReturn(0); 2250637a0070SStefano Zampini } 2251637a0070SStefano Zampini 2252637a0070SStefano Zampini /*@C 2253637a0070SStefano Zampini MatDenseCUDAGetArrayRead - Provides read-only access to the CUDA buffer inside a dense matrix. The array must be restored with MatDenseCUDARestoreArrayRead() when no longer needed. 2254637a0070SStefano Zampini 2255637a0070SStefano Zampini Not Collective 2256637a0070SStefano Zampini 2257637a0070SStefano Zampini Input Parameters: 2258637a0070SStefano Zampini . A - the matrix 2259637a0070SStefano Zampini 2260637a0070SStefano Zampini Output Parameters 2261637a0070SStefano Zampini . array - the GPU array in column major order 2262637a0070SStefano Zampini 2263637a0070SStefano Zampini Notes: 2264637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). 2265637a0070SStefano Zampini 2266637a0070SStefano Zampini Level: developer 2267637a0070SStefano Zampini 2268db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDARestoreArray()`, `MatDenseCUDARestoreArrayWrite()`, `MatDenseCUDAGetArrayWrite()`, `MatDenseCUDARestoreArrayRead()` 2269637a0070SStefano Zampini @*/ 2270637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArrayRead(Mat A, const PetscScalar **a) 2271637a0070SStefano Zampini { 2272637a0070SStefano Zampini PetscFunctionBegin; 2273d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2274cac4c232SBarry Smith PetscUseMethod(A,"MatDenseCUDAGetArrayRead_C",(Mat,const PetscScalar**),(A,a)); 2275637a0070SStefano Zampini PetscFunctionReturn(0); 2276637a0070SStefano Zampini } 2277637a0070SStefano Zampini 2278637a0070SStefano Zampini /*@C 2279637a0070SStefano Zampini MatDenseCUDARestoreArrayRead - Restore read-only access to the CUDA buffer inside a dense matrix previously obtained with a call to MatDenseCUDAGetArrayRead(). 2280637a0070SStefano Zampini 2281637a0070SStefano Zampini Not Collective 2282637a0070SStefano Zampini 2283637a0070SStefano Zampini Input Parameters: 2284637a0070SStefano Zampini + A - the matrix 2285637a0070SStefano Zampini - array - the GPU array in column major order 2286637a0070SStefano Zampini 2287637a0070SStefano Zampini Notes: 2288637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). 2289637a0070SStefano Zampini 2290637a0070SStefano Zampini Level: developer 2291637a0070SStefano Zampini 2292db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDARestoreArray()`, `MatDenseCUDARestoreArrayWrite()`, `MatDenseCUDAGetArrayWrite()`, `MatDenseCUDAGetArrayRead()` 2293637a0070SStefano Zampini @*/ 2294637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArrayRead(Mat A, const PetscScalar **a) 2295637a0070SStefano Zampini { 2296637a0070SStefano Zampini PetscFunctionBegin; 2297cac4c232SBarry Smith PetscUseMethod(A,"MatDenseCUDARestoreArrayRead_C",(Mat,const PetscScalar**),(A,a)); 2298637a0070SStefano Zampini PetscFunctionReturn(0); 2299637a0070SStefano Zampini } 2300637a0070SStefano Zampini 2301637a0070SStefano Zampini /*@C 2302637a0070SStefano Zampini MatDenseCUDAGetArray - Provides access to the CUDA buffer inside a dense matrix. The array must be restored with MatDenseCUDARestoreArray() when no longer needed. 2303637a0070SStefano Zampini 2304637a0070SStefano Zampini Not Collective 2305637a0070SStefano Zampini 2306637a0070SStefano Zampini Input Parameters: 2307637a0070SStefano Zampini . A - the matrix 2308637a0070SStefano Zampini 2309637a0070SStefano Zampini Output Parameters 2310637a0070SStefano Zampini . array - the GPU array in column major order 2311637a0070SStefano Zampini 2312637a0070SStefano Zampini Notes: 2313637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). For read-only access, use MatDenseCUDAGetArrayRead(). 2314637a0070SStefano Zampini 2315637a0070SStefano Zampini Level: developer 2316637a0070SStefano Zampini 2317db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArrayRead()`, `MatDenseCUDARestoreArray()`, `MatDenseCUDARestoreArrayWrite()`, `MatDenseCUDAGetArrayWrite()`, `MatDenseCUDARestoreArrayRead()` 2318637a0070SStefano Zampini @*/ 2319637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArray(Mat A, PetscScalar **a) 2320637a0070SStefano Zampini { 2321637a0070SStefano Zampini PetscFunctionBegin; 2322d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2323cac4c232SBarry Smith PetscUseMethod(A,"MatDenseCUDAGetArray_C",(Mat,PetscScalar**),(A,a)); 23249566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)A)); 2325637a0070SStefano Zampini PetscFunctionReturn(0); 2326637a0070SStefano Zampini } 2327637a0070SStefano Zampini 2328637a0070SStefano Zampini /*@C 2329637a0070SStefano Zampini MatDenseCUDARestoreArray - Restore access to the CUDA buffer inside a dense matrix previously obtained with MatDenseCUDAGetArray(). 2330637a0070SStefano Zampini 2331637a0070SStefano Zampini Not Collective 2332637a0070SStefano Zampini 2333637a0070SStefano Zampini Input Parameters: 2334637a0070SStefano Zampini + A - the matrix 2335637a0070SStefano Zampini - array - the GPU array in column major order 2336637a0070SStefano Zampini 2337637a0070SStefano Zampini Notes: 2338637a0070SStefano Zampini 2339637a0070SStefano Zampini Level: developer 2340637a0070SStefano Zampini 2341db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDARestoreArrayWrite()`, `MatDenseCUDAGetArrayWrite()`, `MatDenseCUDARestoreArrayRead()`, `MatDenseCUDAGetArrayRead()` 2342637a0070SStefano Zampini @*/ 2343637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArray(Mat A, PetscScalar **a) 2344637a0070SStefano Zampini { 2345637a0070SStefano Zampini PetscFunctionBegin; 2346d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2347cac4c232SBarry Smith PetscUseMethod(A,"MatDenseCUDARestoreArray_C",(Mat,PetscScalar**),(A,a)); 23489566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)A)); 2349637a0070SStefano Zampini A->offloadmask = PETSC_OFFLOAD_GPU; 2350637a0070SStefano Zampini PetscFunctionReturn(0); 2351637a0070SStefano Zampini } 2352637a0070SStefano Zampini #endif 2353637a0070SStefano Zampini 2354637a0070SStefano Zampini /*@C 2355637a0070SStefano Zampini MatCreateDense - Creates a matrix in dense format. 23568965ea79SLois Curfman McInnes 2357d083f849SBarry Smith Collective 2358db81eaa0SLois Curfman McInnes 23598965ea79SLois Curfman McInnes Input Parameters: 2360db81eaa0SLois Curfman McInnes + comm - MPI communicator 23618965ea79SLois Curfman McInnes . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2362db81eaa0SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 23638965ea79SLois Curfman McInnes . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 2364db81eaa0SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 23656cfe35ddSJose E. Roman - data - optional location of matrix data. Set data=NULL (PETSC_NULL_SCALAR for Fortran users) for PETSc 2366dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 23678965ea79SLois Curfman McInnes 23688965ea79SLois Curfman McInnes Output Parameter: 2369477f1c0bSLois Curfman McInnes . A - the matrix 23708965ea79SLois Curfman McInnes 2371b259b22eSLois Curfman McInnes Notes: 237239ddd567SLois Curfman McInnes The dense format is fully compatible with standard Fortran 77 237339ddd567SLois Curfman McInnes storage by columns. 2374002bc6daSRichard Tran Mills Note that, although local portions of the matrix are stored in column-major 2375002bc6daSRichard Tran Mills order, the matrix is partitioned across MPI ranks by row. 23768965ea79SLois Curfman McInnes 237718f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 237818f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 23796cfe35ddSJose E. Roman set data=NULL (PETSC_NULL_SCALAR for Fortran users). 238018f449edSLois Curfman McInnes 23818965ea79SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 23828965ea79SLois Curfman McInnes (possibly both). 23838965ea79SLois Curfman McInnes 2384027ccd11SLois Curfman McInnes Level: intermediate 2385027ccd11SLois Curfman McInnes 2386db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqDense()`, `MatSetValues()` 23878965ea79SLois Curfman McInnes @*/ 238869b1f4b7SBarry Smith PetscErrorCode MatCreateDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 23898965ea79SLois Curfman McInnes { 23903a40ed3dSBarry Smith PetscFunctionBegin; 23919566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,A)); 23929566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A,m,n,M,N)); 23936f08ad05SPierre Jolivet PetscCall(MatSetType(*A,MATDENSE)); 23949566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(*A,data)); 23956f08ad05SPierre Jolivet PetscCall(MatMPIDenseSetPreallocation(*A,data)); 23963a40ed3dSBarry Smith PetscFunctionReturn(0); 23978965ea79SLois Curfman McInnes } 23988965ea79SLois Curfman McInnes 2399637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 2400637a0070SStefano Zampini /*@C 2401637a0070SStefano Zampini MatCreateDenseCUDA - Creates a matrix in dense format using CUDA. 2402637a0070SStefano Zampini 2403637a0070SStefano Zampini Collective 2404637a0070SStefano Zampini 2405637a0070SStefano Zampini Input Parameters: 2406637a0070SStefano Zampini + comm - MPI communicator 2407637a0070SStefano Zampini . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2408637a0070SStefano Zampini . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 2409637a0070SStefano Zampini . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 2410637a0070SStefano Zampini . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 2411637a0070SStefano Zampini - data - optional location of GPU matrix data. Set data=NULL for PETSc 2412637a0070SStefano Zampini to control matrix memory allocation. 2413637a0070SStefano Zampini 2414637a0070SStefano Zampini Output Parameter: 2415637a0070SStefano Zampini . A - the matrix 2416637a0070SStefano Zampini 2417637a0070SStefano Zampini Notes: 2418637a0070SStefano Zampini 2419637a0070SStefano Zampini Level: intermediate 2420637a0070SStefano Zampini 2421db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateDense()` 2422637a0070SStefano Zampini @*/ 2423637a0070SStefano Zampini PetscErrorCode MatCreateDenseCUDA(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 2424637a0070SStefano Zampini { 2425637a0070SStefano Zampini PetscFunctionBegin; 24269566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,A)); 2427637a0070SStefano Zampini PetscValidLogicalCollectiveBool(*A,!!data,6); 24289566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A,m,n,M,N)); 24296f08ad05SPierre Jolivet PetscCall(MatSetType(*A,MATDENSECUDA)); 24309566063dSJacob Faibussowitsch PetscCall(MatSeqDenseCUDASetPreallocation(*A,data)); 24316f08ad05SPierre Jolivet PetscCall(MatMPIDenseCUDASetPreallocation(*A,data)); 2432637a0070SStefano Zampini PetscFunctionReturn(0); 2433637a0070SStefano Zampini } 2434637a0070SStefano Zampini #endif 2435637a0070SStefano Zampini 24366849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat) 24378965ea79SLois Curfman McInnes { 24388965ea79SLois Curfman McInnes Mat mat; 24393501a2bdSLois Curfman McInnes Mat_MPIDense *a,*oldmat = (Mat_MPIDense*)A->data; 24408965ea79SLois Curfman McInnes 24413a40ed3dSBarry Smith PetscFunctionBegin; 2442f4259b30SLisandro Dalcin *newmat = NULL; 24439566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&mat)); 24449566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N)); 24459566063dSJacob Faibussowitsch PetscCall(MatSetType(mat,((PetscObject)A)->type_name)); 2446834f8fabSBarry Smith a = (Mat_MPIDense*)mat->data; 24475aa7edbeSHong Zhang 2448d5f3da31SBarry Smith mat->factortype = A->factortype; 2449c456f294SBarry Smith mat->assembled = PETSC_TRUE; 2450273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 24518965ea79SLois Curfman McInnes 2452e0fa3b82SLois Curfman McInnes mat->insertmode = NOT_SET_VALUES; 24533782ba37SSatish Balay a->donotstash = oldmat->donotstash; 2454e04c1aa4SHong Zhang 24559566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->rmap,&mat->rmap)); 24569566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->cmap,&mat->cmap)); 24578965ea79SLois Curfman McInnes 24589566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A,cpvalues,&a->A)); 24599566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A)); 246001b82886SBarry Smith 24618965ea79SLois Curfman McInnes *newmat = mat; 24623a40ed3dSBarry Smith PetscFunctionReturn(0); 24638965ea79SLois Curfman McInnes } 24648965ea79SLois Curfman McInnes 2465eb91f321SVaclav Hapla PetscErrorCode MatLoad_MPIDense(Mat newMat, PetscViewer viewer) 2466eb91f321SVaclav Hapla { 246787d5ce66SSatish Balay PetscBool isbinary; 246887d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 246987d5ce66SSatish Balay PetscBool ishdf5; 247087d5ce66SSatish Balay #endif 2471eb91f321SVaclav Hapla 2472eb91f321SVaclav Hapla PetscFunctionBegin; 2473eb91f321SVaclav Hapla PetscValidHeaderSpecific(newMat,MAT_CLASSID,1); 2474eb91f321SVaclav Hapla PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2); 2475eb91f321SVaclav Hapla /* force binary viewer to load .info file if it has not yet done so */ 24769566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 24779566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary)); 247887d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 24799566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERHDF5, &ishdf5)); 248087d5ce66SSatish Balay #endif 2481eb91f321SVaclav Hapla if (isbinary) { 24829566063dSJacob Faibussowitsch PetscCall(MatLoad_Dense_Binary(newMat,viewer)); 2483eb91f321SVaclav Hapla #if defined(PETSC_HAVE_HDF5) 248487d5ce66SSatish Balay } else if (ishdf5) { 24859566063dSJacob Faibussowitsch PetscCall(MatLoad_Dense_HDF5(newMat,viewer)); 2486eb91f321SVaclav Hapla #endif 248798921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)newMat),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)newMat)->type_name); 2488eb91f321SVaclav Hapla PetscFunctionReturn(0); 2489eb91f321SVaclav Hapla } 2490eb91f321SVaclav Hapla 24916718818eSStefano Zampini static PetscErrorCode MatEqual_MPIDense(Mat A,Mat B,PetscBool *flag) 24926e4ee0c6SHong Zhang { 24936e4ee0c6SHong Zhang Mat_MPIDense *matB = (Mat_MPIDense*)B->data,*matA = (Mat_MPIDense*)A->data; 24946e4ee0c6SHong Zhang Mat a,b; 249590ace30eSBarry Smith 24966e4ee0c6SHong Zhang PetscFunctionBegin; 24976e4ee0c6SHong Zhang a = matA->A; 24986e4ee0c6SHong Zhang b = matB->A; 24992cf15c64SPierre Jolivet PetscCall(MatEqual(a,b,flag)); 25002cf15c64SPierre Jolivet PetscCall(MPIU_Allreduce(MPI_IN_PLACE,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A))); 25016e4ee0c6SHong Zhang PetscFunctionReturn(0); 25026e4ee0c6SHong Zhang } 250390ace30eSBarry Smith 25046718818eSStefano Zampini PetscErrorCode MatDestroy_MatTransMatMult_MPIDense_MPIDense(void *data) 2505baa3c1c6SHong Zhang { 25066718818eSStefano Zampini Mat_TransMatMultDense *atb = (Mat_TransMatMultDense *)data; 2507baa3c1c6SHong Zhang 2508baa3c1c6SHong Zhang PetscFunctionBegin; 25099566063dSJacob Faibussowitsch PetscCall(PetscFree2(atb->sendbuf,atb->recvcounts)); 25109566063dSJacob Faibussowitsch PetscCall(MatDestroy(&atb->atb)); 25119566063dSJacob Faibussowitsch PetscCall(PetscFree(atb)); 2512baa3c1c6SHong Zhang PetscFunctionReturn(0); 2513baa3c1c6SHong Zhang } 2514baa3c1c6SHong Zhang 25156718818eSStefano Zampini PetscErrorCode MatDestroy_MatMatTransMult_MPIDense_MPIDense(void *data) 2516cc48ffa7SToby Isaac { 25176718818eSStefano Zampini Mat_MatTransMultDense *abt = (Mat_MatTransMultDense *)data; 2518cc48ffa7SToby Isaac 2519cc48ffa7SToby Isaac PetscFunctionBegin; 25209566063dSJacob Faibussowitsch PetscCall(PetscFree2(abt->buf[0],abt->buf[1])); 25219566063dSJacob Faibussowitsch PetscCall(PetscFree2(abt->recvcounts,abt->recvdispls)); 25229566063dSJacob Faibussowitsch PetscCall(PetscFree(abt)); 2523cc48ffa7SToby Isaac PetscFunctionReturn(0); 2524cc48ffa7SToby Isaac } 2525cc48ffa7SToby Isaac 25266718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 2527cb20be35SHong Zhang { 2528baa3c1c6SHong Zhang Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 25296718818eSStefano Zampini Mat_TransMatMultDense *atb; 2530cb20be35SHong Zhang MPI_Comm comm; 25316718818eSStefano Zampini PetscMPIInt size,*recvcounts; 25326718818eSStefano Zampini PetscScalar *carray,*sendbuf; 2533637a0070SStefano Zampini const PetscScalar *atbarray; 2534a1f9a5e6SStefano Zampini PetscInt i,cN=C->cmap->N,proc,k,j,lda; 2535e68c0b26SHong Zhang const PetscInt *ranges; 2536cb20be35SHong Zhang 2537cb20be35SHong Zhang PetscFunctionBegin; 25386718818eSStefano Zampini MatCheckProduct(C,3); 25395f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 25406718818eSStefano Zampini atb = (Mat_TransMatMultDense *)C->product->data; 25416718818eSStefano Zampini recvcounts = atb->recvcounts; 25426718818eSStefano Zampini sendbuf = atb->sendbuf; 25436718818eSStefano Zampini 25449566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A,&comm)); 25459566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 2546e68c0b26SHong Zhang 2547c5ef1628SHong Zhang /* compute atbarray = aseq^T * bseq */ 25489566063dSJacob Faibussowitsch PetscCall(MatTransposeMatMult(a->A,b->A,atb->atb ? MAT_REUSE_MATRIX : MAT_INITIAL_MATRIX,PETSC_DEFAULT,&atb->atb)); 2549cb20be35SHong Zhang 25509566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRanges(C,&ranges)); 2551cb20be35SHong Zhang 2552660d5466SHong Zhang /* arrange atbarray into sendbuf */ 25539566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(atb->atb,&atbarray)); 25549566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(atb->atb,&lda)); 2555637a0070SStefano Zampini for (proc=0, k=0; proc<size; proc++) { 2556baa3c1c6SHong Zhang for (j=0; j<cN; j++) { 2557a1f9a5e6SStefano Zampini for (i=ranges[proc]; i<ranges[proc+1]; i++) sendbuf[k++] = atbarray[i+j*lda]; 2558cb20be35SHong Zhang } 2559cb20be35SHong Zhang } 25609566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(atb->atb,&atbarray)); 2561637a0070SStefano Zampini 2562c5ef1628SHong Zhang /* sum all atbarray to local values of C */ 25639566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(c->A,&carray)); 25649566063dSJacob Faibussowitsch PetscCallMPI(MPI_Reduce_scatter(sendbuf,carray,recvcounts,MPIU_SCALAR,MPIU_SUM,comm)); 25659566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(c->A,&carray)); 25669566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY)); 25679566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY)); 2568cb20be35SHong Zhang PetscFunctionReturn(0); 2569cb20be35SHong Zhang } 2570cb20be35SHong Zhang 25716718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat C) 2572cb20be35SHong Zhang { 2573cb20be35SHong Zhang MPI_Comm comm; 2574baa3c1c6SHong Zhang PetscMPIInt size; 2575660d5466SHong Zhang PetscInt cm=A->cmap->n,cM,cN=B->cmap->N; 2576baa3c1c6SHong Zhang Mat_TransMatMultDense *atb; 25776718818eSStefano Zampini PetscBool cisdense; 25780acaeb71SStefano Zampini PetscInt i; 25790acaeb71SStefano Zampini const PetscInt *ranges; 2580cb20be35SHong Zhang 2581cb20be35SHong Zhang PetscFunctionBegin; 25826718818eSStefano Zampini MatCheckProduct(C,3); 25835f80ce2aSJacob Faibussowitsch PetscCheck(!C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty"); 25849566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A,&comm)); 2585cb20be35SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) { 258698921bdaSJacob Faibussowitsch SETERRQ(comm,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != B (%" PetscInt_FMT ",%" PetscInt_FMT ")",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 2587cb20be35SHong Zhang } 2588cb20be35SHong Zhang 25894222ddf1SHong Zhang /* create matrix product C */ 25909566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C,cm,B->cmap->n,A->cmap->N,B->cmap->N)); 25919566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C,&cisdense,MATMPIDENSE,MATMPIDENSECUDA,"")); 25926718818eSStefano Zampini if (!cisdense) { 25939566063dSJacob Faibussowitsch PetscCall(MatSetType(C,((PetscObject)A)->type_name)); 25946718818eSStefano Zampini } 25959566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 2596baa3c1c6SHong Zhang 25974222ddf1SHong Zhang /* create data structure for reuse C */ 25989566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 25999566063dSJacob Faibussowitsch PetscCall(PetscNew(&atb)); 26004222ddf1SHong Zhang cM = C->rmap->N; 26019566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(cM*cN,&atb->sendbuf,size,&atb->recvcounts)); 26029566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRanges(C,&ranges)); 26030acaeb71SStefano Zampini for (i=0; i<size; i++) atb->recvcounts[i] = (ranges[i+1] - ranges[i])*cN; 2604baa3c1c6SHong Zhang 26056718818eSStefano Zampini C->product->data = atb; 26066718818eSStefano Zampini C->product->destroy = MatDestroy_MatTransMatMult_MPIDense_MPIDense; 2607cb20be35SHong Zhang PetscFunctionReturn(0); 2608cb20be35SHong Zhang } 2609cb20be35SHong Zhang 26104222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat A, Mat B, PetscReal fill, Mat C) 2611cb20be35SHong Zhang { 2612cc48ffa7SToby Isaac MPI_Comm comm; 2613cc48ffa7SToby Isaac PetscMPIInt i, size; 2614cc48ffa7SToby Isaac PetscInt maxRows, bufsiz; 2615cc48ffa7SToby Isaac PetscMPIInt tag; 26164222ddf1SHong Zhang PetscInt alg; 2617cc48ffa7SToby Isaac Mat_MatTransMultDense *abt; 26184222ddf1SHong Zhang Mat_Product *product = C->product; 26194222ddf1SHong Zhang PetscBool flg; 2620cc48ffa7SToby Isaac 2621cc48ffa7SToby Isaac PetscFunctionBegin; 26226718818eSStefano Zampini MatCheckProduct(C,4); 26235f80ce2aSJacob Faibussowitsch PetscCheck(!C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty"); 26244222ddf1SHong Zhang /* check local size of A and B */ 26255f80ce2aSJacob Faibussowitsch PetscCheck(A->cmap->n == B->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local column dimensions are incompatible, A (%" PetscInt_FMT ") != B (%" PetscInt_FMT ")",A->cmap->n,B->cmap->n); 2626cc48ffa7SToby Isaac 26279566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg,"allgatherv",&flg)); 2628637a0070SStefano Zampini alg = flg ? 0 : 1; 2629cc48ffa7SToby Isaac 26304222ddf1SHong Zhang /* setup matrix product C */ 26319566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C,A->rmap->n,B->rmap->n,A->rmap->N,B->rmap->N)); 26329566063dSJacob Faibussowitsch PetscCall(MatSetType(C,MATMPIDENSE)); 26339566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 26349566063dSJacob Faibussowitsch PetscCall(PetscObjectGetNewTag((PetscObject)C,&tag)); 26354222ddf1SHong Zhang 26364222ddf1SHong Zhang /* create data structure for reuse C */ 26379566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C,&comm)); 26389566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 26399566063dSJacob Faibussowitsch PetscCall(PetscNew(&abt)); 2640cc48ffa7SToby Isaac abt->tag = tag; 2641faa55883SToby Isaac abt->alg = alg; 2642faa55883SToby Isaac switch (alg) { 26434222ddf1SHong Zhang case 1: /* alg: "cyclic" */ 2644cc48ffa7SToby Isaac for (maxRows = 0, i = 0; i < size; i++) maxRows = PetscMax(maxRows, (B->rmap->range[i + 1] - B->rmap->range[i])); 2645cc48ffa7SToby Isaac bufsiz = A->cmap->N * maxRows; 26469566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(bufsiz,&(abt->buf[0]),bufsiz,&(abt->buf[1]))); 2647faa55883SToby Isaac break; 26484222ddf1SHong Zhang default: /* alg: "allgatherv" */ 26499566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(B->rmap->n * B->cmap->N, &(abt->buf[0]), B->rmap->N * B->cmap->N, &(abt->buf[1]))); 26509566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(size,&(abt->recvcounts),size+1,&(abt->recvdispls))); 2651faa55883SToby Isaac for (i = 0; i <= size; i++) abt->recvdispls[i] = B->rmap->range[i] * A->cmap->N; 2652faa55883SToby Isaac for (i = 0; i < size; i++) abt->recvcounts[i] = abt->recvdispls[i + 1] - abt->recvdispls[i]; 2653faa55883SToby Isaac break; 2654faa55883SToby Isaac } 2655cc48ffa7SToby Isaac 26566718818eSStefano Zampini C->product->data = abt; 26576718818eSStefano Zampini C->product->destroy = MatDestroy_MatMatTransMult_MPIDense_MPIDense; 26584222ddf1SHong Zhang C->ops->mattransposemultnumeric = MatMatTransposeMultNumeric_MPIDense_MPIDense; 2659cc48ffa7SToby Isaac PetscFunctionReturn(0); 2660cc48ffa7SToby Isaac } 2661cc48ffa7SToby Isaac 2662faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(Mat A, Mat B, Mat C) 2663cc48ffa7SToby Isaac { 2664cc48ffa7SToby Isaac Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 26656718818eSStefano Zampini Mat_MatTransMultDense *abt; 2666cc48ffa7SToby Isaac MPI_Comm comm; 2667cc48ffa7SToby Isaac PetscMPIInt rank,size, sendsiz, recvsiz, sendto, recvfrom, recvisfrom; 2668f4259b30SLisandro Dalcin PetscScalar *sendbuf, *recvbuf=NULL, *cv; 2669cc48ffa7SToby Isaac PetscInt i,cK=A->cmap->N,k,j,bn; 2670cc48ffa7SToby Isaac PetscScalar _DOne=1.0,_DZero=0.0; 2671637a0070SStefano Zampini const PetscScalar *av,*bv; 267223fff9afSBarry Smith PetscBLASInt cm, cn, ck, alda, blda = 0, clda; 2673cc48ffa7SToby Isaac MPI_Request reqs[2]; 2674cc48ffa7SToby Isaac const PetscInt *ranges; 2675cc48ffa7SToby Isaac 2676cc48ffa7SToby Isaac PetscFunctionBegin; 26776718818eSStefano Zampini MatCheckProduct(C,3); 26785f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 26796718818eSStefano Zampini abt = (Mat_MatTransMultDense*)C->product->data; 26809566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C,&comm)); 26819566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm,&rank)); 26829566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 26839566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A,&av)); 26849566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(b->A,&bv)); 26859566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(c->A,&cv)); 26869566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&i)); 26879566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i,&alda)); 26889566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(b->A,&i)); 26899566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i,&blda)); 26909566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(c->A,&i)); 26919566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i,&clda)); 26929566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRanges(B,&ranges)); 2693cc48ffa7SToby Isaac bn = B->rmap->n; 2694637a0070SStefano Zampini if (blda == bn) { 2695637a0070SStefano Zampini sendbuf = (PetscScalar*)bv; 2696cc48ffa7SToby Isaac } else { 2697cc48ffa7SToby Isaac sendbuf = abt->buf[0]; 2698cc48ffa7SToby Isaac for (k = 0, i = 0; i < cK; i++) { 2699cc48ffa7SToby Isaac for (j = 0; j < bn; j++, k++) { 2700637a0070SStefano Zampini sendbuf[k] = bv[i * blda + j]; 2701cc48ffa7SToby Isaac } 2702cc48ffa7SToby Isaac } 2703cc48ffa7SToby Isaac } 2704cc48ffa7SToby Isaac if (size > 1) { 2705cc48ffa7SToby Isaac sendto = (rank + size - 1) % size; 2706cc48ffa7SToby Isaac recvfrom = (rank + size + 1) % size; 2707cc48ffa7SToby Isaac } else { 2708cc48ffa7SToby Isaac sendto = recvfrom = 0; 2709cc48ffa7SToby Isaac } 27109566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(cK,&ck)); 27119566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(c->A->rmap->n,&cm)); 2712cc48ffa7SToby Isaac recvisfrom = rank; 2713cc48ffa7SToby Isaac for (i = 0; i < size; i++) { 2714cc48ffa7SToby Isaac /* we have finished receiving in sending, bufs can be read/modified */ 2715cc48ffa7SToby Isaac PetscInt nextrecvisfrom = (recvisfrom + 1) % size; /* which process the next recvbuf will originate on */ 2716cc48ffa7SToby Isaac PetscInt nextbn = ranges[nextrecvisfrom + 1] - ranges[nextrecvisfrom]; 2717cc48ffa7SToby Isaac 2718cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2719cc48ffa7SToby Isaac /* start the cyclic sends from sendbuf, to recvbuf (which will switch to sendbuf) */ 2720cc48ffa7SToby Isaac sendsiz = cK * bn; 2721cc48ffa7SToby Isaac recvsiz = cK * nextbn; 2722cc48ffa7SToby Isaac recvbuf = (i & 1) ? abt->buf[0] : abt->buf[1]; 27239566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(sendbuf, sendsiz, MPIU_SCALAR, sendto, abt->tag, comm, &reqs[0])); 27249566063dSJacob Faibussowitsch PetscCallMPI(MPI_Irecv(recvbuf, recvsiz, MPIU_SCALAR, recvfrom, abt->tag, comm, &reqs[1])); 2725cc48ffa7SToby Isaac } 2726cc48ffa7SToby Isaac 2727cc48ffa7SToby Isaac /* local aseq * sendbuf^T */ 27289566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(ranges[recvisfrom + 1] - ranges[recvisfrom], &cn)); 272950ce3c9cSStefano Zampini if (cm && cn && ck) PetscStackCallBLAS("BLASgemm",BLASgemm_("N","T",&cm,&cn,&ck,&_DOne,av,&alda,sendbuf,&cn,&_DZero,cv + clda * ranges[recvisfrom],&clda)); 2730cc48ffa7SToby Isaac 2731cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2732cc48ffa7SToby Isaac /* wait for the sends and receives to complete, swap sendbuf and recvbuf */ 27339566063dSJacob Faibussowitsch PetscCallMPI(MPI_Waitall(2, reqs, MPI_STATUSES_IGNORE)); 2734cc48ffa7SToby Isaac } 2735cc48ffa7SToby Isaac bn = nextbn; 2736cc48ffa7SToby Isaac recvisfrom = nextrecvisfrom; 2737cc48ffa7SToby Isaac sendbuf = recvbuf; 2738cc48ffa7SToby Isaac } 27399566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A,&av)); 27409566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(b->A,&bv)); 27419566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(c->A,&cv)); 27429566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY)); 27439566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY)); 2744cc48ffa7SToby Isaac PetscFunctionReturn(0); 2745cc48ffa7SToby Isaac } 2746cc48ffa7SToby Isaac 2747faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(Mat A, Mat B, Mat C) 2748faa55883SToby Isaac { 2749faa55883SToby Isaac Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 27506718818eSStefano Zampini Mat_MatTransMultDense *abt; 2751faa55883SToby Isaac MPI_Comm comm; 2752637a0070SStefano Zampini PetscMPIInt size; 2753637a0070SStefano Zampini PetscScalar *cv, *sendbuf, *recvbuf; 2754637a0070SStefano Zampini const PetscScalar *av,*bv; 2755637a0070SStefano Zampini PetscInt blda,i,cK=A->cmap->N,k,j,bn; 2756faa55883SToby Isaac PetscScalar _DOne=1.0,_DZero=0.0; 2757637a0070SStefano Zampini PetscBLASInt cm, cn, ck, alda, clda; 2758faa55883SToby Isaac 2759faa55883SToby Isaac PetscFunctionBegin; 27606718818eSStefano Zampini MatCheckProduct(C,3); 27615f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 27626718818eSStefano Zampini abt = (Mat_MatTransMultDense*)C->product->data; 27639566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A,&comm)); 27649566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 27659566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A,&av)); 27669566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(b->A,&bv)); 27679566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(c->A,&cv)); 27689566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&i)); 27699566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i,&alda)); 27709566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(b->A,&blda)); 27719566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(c->A,&i)); 27729566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i,&clda)); 2773faa55883SToby Isaac /* copy transpose of B into buf[0] */ 2774faa55883SToby Isaac bn = B->rmap->n; 2775faa55883SToby Isaac sendbuf = abt->buf[0]; 2776faa55883SToby Isaac recvbuf = abt->buf[1]; 2777faa55883SToby Isaac for (k = 0, j = 0; j < bn; j++) { 2778faa55883SToby Isaac for (i = 0; i < cK; i++, k++) { 2779637a0070SStefano Zampini sendbuf[k] = bv[i * blda + j]; 2780faa55883SToby Isaac } 2781faa55883SToby Isaac } 27829566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(b->A,&bv)); 27839566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgatherv(sendbuf, bn * cK, MPIU_SCALAR, recvbuf, abt->recvcounts, abt->recvdispls, MPIU_SCALAR, comm)); 27849566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(cK,&ck)); 27859566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(c->A->rmap->n,&cm)); 27869566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(c->A->cmap->n,&cn)); 278750ce3c9cSStefano Zampini if (cm && cn && ck) PetscStackCallBLAS("BLASgemm",BLASgemm_("N","N",&cm,&cn,&ck,&_DOne,av,&alda,recvbuf,&ck,&_DZero,cv,&clda)); 27889566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A,&av)); 27899566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(b->A,&bv)); 27909566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(c->A,&cv)); 27919566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY)); 27929566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY)); 2793faa55883SToby Isaac PetscFunctionReturn(0); 2794faa55883SToby Isaac } 2795faa55883SToby Isaac 2796faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat A, Mat B, Mat C) 2797faa55883SToby Isaac { 27986718818eSStefano Zampini Mat_MatTransMultDense *abt; 2799faa55883SToby Isaac 2800faa55883SToby Isaac PetscFunctionBegin; 28016718818eSStefano Zampini MatCheckProduct(C,3); 28025f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 28036718818eSStefano Zampini abt = (Mat_MatTransMultDense*)C->product->data; 2804faa55883SToby Isaac switch (abt->alg) { 2805faa55883SToby Isaac case 1: 28069566063dSJacob Faibussowitsch PetscCall(MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(A, B, C)); 2807faa55883SToby Isaac break; 2808faa55883SToby Isaac default: 28099566063dSJacob Faibussowitsch PetscCall(MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(A, B, C)); 2810faa55883SToby Isaac break; 2811faa55883SToby Isaac } 2812faa55883SToby Isaac PetscFunctionReturn(0); 2813faa55883SToby Isaac } 2814faa55883SToby Isaac 28156718818eSStefano Zampini PetscErrorCode MatDestroy_MatMatMult_MPIDense_MPIDense(void *data) 2816320f2790SHong Zhang { 28176718818eSStefano Zampini Mat_MatMultDense *ab = (Mat_MatMultDense*)data; 2818320f2790SHong Zhang 2819320f2790SHong Zhang PetscFunctionBegin; 28209566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ab->Ce)); 28219566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ab->Ae)); 28229566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ab->Be)); 28239566063dSJacob Faibussowitsch PetscCall(PetscFree(ab)); 2824320f2790SHong Zhang PetscFunctionReturn(0); 2825320f2790SHong Zhang } 2826320f2790SHong Zhang 28275242a7b1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 2828320f2790SHong Zhang PetscErrorCode MatMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 2829320f2790SHong Zhang { 28306718818eSStefano Zampini Mat_MatMultDense *ab; 2831320f2790SHong Zhang 2832320f2790SHong Zhang PetscFunctionBegin; 28336718818eSStefano Zampini MatCheckProduct(C,3); 28345f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Missing product data"); 28356718818eSStefano Zampini ab = (Mat_MatMultDense*)C->product->data; 28369566063dSJacob Faibussowitsch PetscCall(MatConvert_MPIDense_Elemental(A,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Ae)); 28379566063dSJacob Faibussowitsch PetscCall(MatConvert_MPIDense_Elemental(B,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Be)); 28389566063dSJacob Faibussowitsch PetscCall(MatMatMultNumeric_Elemental(ab->Ae,ab->Be,ab->Ce)); 28399566063dSJacob Faibussowitsch PetscCall(MatConvert(ab->Ce,MATMPIDENSE,MAT_REUSE_MATRIX,&C)); 2840320f2790SHong Zhang PetscFunctionReturn(0); 2841320f2790SHong Zhang } 2842320f2790SHong Zhang 28436718818eSStefano Zampini static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat C) 2844320f2790SHong Zhang { 2845320f2790SHong Zhang Mat Ae,Be,Ce; 2846320f2790SHong Zhang Mat_MatMultDense *ab; 2847320f2790SHong Zhang 2848320f2790SHong Zhang PetscFunctionBegin; 28496718818eSStefano Zampini MatCheckProduct(C,4); 28505f80ce2aSJacob Faibussowitsch PetscCheck(!C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty"); 28514222ddf1SHong Zhang /* check local size of A and B */ 2852320f2790SHong Zhang if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend) { 285398921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != B (%" PetscInt_FMT ",%" PetscInt_FMT ")",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 2854320f2790SHong Zhang } 2855320f2790SHong Zhang 28564222ddf1SHong Zhang /* create elemental matrices Ae and Be */ 28579566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &Ae)); 28589566063dSJacob Faibussowitsch PetscCall(MatSetSizes(Ae,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N)); 28599566063dSJacob Faibussowitsch PetscCall(MatSetType(Ae,MATELEMENTAL)); 28609566063dSJacob Faibussowitsch PetscCall(MatSetUp(Ae)); 28619566063dSJacob Faibussowitsch PetscCall(MatSetOption(Ae,MAT_ROW_ORIENTED,PETSC_FALSE)); 2862320f2790SHong Zhang 28639566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)B), &Be)); 28649566063dSJacob Faibussowitsch PetscCall(MatSetSizes(Be,PETSC_DECIDE,PETSC_DECIDE,B->rmap->N,B->cmap->N)); 28659566063dSJacob Faibussowitsch PetscCall(MatSetType(Be,MATELEMENTAL)); 28669566063dSJacob Faibussowitsch PetscCall(MatSetUp(Be)); 28679566063dSJacob Faibussowitsch PetscCall(MatSetOption(Be,MAT_ROW_ORIENTED,PETSC_FALSE)); 2868320f2790SHong Zhang 28694222ddf1SHong Zhang /* compute symbolic Ce = Ae*Be */ 28709566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)C),&Ce)); 28719566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_Elemental(Ae,Be,fill,Ce)); 28724222ddf1SHong Zhang 28734222ddf1SHong Zhang /* setup C */ 28749566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C,A->rmap->n,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE)); 28759566063dSJacob Faibussowitsch PetscCall(MatSetType(C,MATDENSE)); 28769566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 2877320f2790SHong Zhang 2878320f2790SHong Zhang /* create data structure for reuse Cdense */ 28799566063dSJacob Faibussowitsch PetscCall(PetscNew(&ab)); 2880320f2790SHong Zhang ab->Ae = Ae; 2881320f2790SHong Zhang ab->Be = Be; 2882320f2790SHong Zhang ab->Ce = Ce; 28836718818eSStefano Zampini 28846718818eSStefano Zampini C->product->data = ab; 28856718818eSStefano Zampini C->product->destroy = MatDestroy_MatMatMult_MPIDense_MPIDense; 28864222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIDense; 2887320f2790SHong Zhang PetscFunctionReturn(0); 2888320f2790SHong Zhang } 28894222ddf1SHong Zhang #endif 28904222ddf1SHong Zhang /* ----------------------------------------------- */ 28914222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 28924222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_AB(Mat C) 2893320f2790SHong Zhang { 2894320f2790SHong Zhang PetscFunctionBegin; 28954222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIDense; 28964222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 2897320f2790SHong Zhang PetscFunctionReturn(0); 2898320f2790SHong Zhang } 28995242a7b1SHong Zhang #endif 290086aefd0dSHong Zhang 29014222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_AtB(Mat C) 29024222ddf1SHong Zhang { 29034222ddf1SHong Zhang Mat_Product *product = C->product; 29044222ddf1SHong Zhang Mat A = product->A,B=product->B; 29054222ddf1SHong Zhang 29064222ddf1SHong Zhang PetscFunctionBegin; 29074222ddf1SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) 290898921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 29096718818eSStefano Zampini C->ops->transposematmultsymbolic = MatTransposeMatMultSymbolic_MPIDense_MPIDense; 29106718818eSStefano Zampini C->ops->productsymbolic = MatProductSymbolic_AtB; 29114222ddf1SHong Zhang PetscFunctionReturn(0); 29124222ddf1SHong Zhang } 29134222ddf1SHong Zhang 29144222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_ABt(Mat C) 29154222ddf1SHong Zhang { 29164222ddf1SHong Zhang Mat_Product *product = C->product; 29174222ddf1SHong Zhang const char *algTypes[2] = {"allgatherv","cyclic"}; 29184222ddf1SHong Zhang PetscInt alg,nalg = 2; 29194222ddf1SHong Zhang PetscBool flg = PETSC_FALSE; 29204222ddf1SHong Zhang 29214222ddf1SHong Zhang PetscFunctionBegin; 29224222ddf1SHong Zhang /* Set default algorithm */ 29234222ddf1SHong Zhang alg = 0; /* default is allgatherv */ 29249566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg,"default",&flg)); 29254222ddf1SHong Zhang if (flg) { 29269566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg])); 29274222ddf1SHong Zhang } 29284222ddf1SHong Zhang 29294222ddf1SHong Zhang /* Get runtime option */ 29304222ddf1SHong Zhang if (product->api_user) { 2931d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatMatTransposeMult","Mat"); 29329566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-matmattransmult_mpidense_mpidense_via","Algorithmic approach","MatMatTransposeMult",algTypes,nalg,algTypes[alg],&alg,&flg)); 2933d0609cedSBarry Smith PetscOptionsEnd(); 29344222ddf1SHong Zhang } else { 2935d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatProduct_ABt","Mat"); 29369566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm","Algorithmic approach","MatProduct_ABt",algTypes,nalg,algTypes[alg],&alg,&flg)); 2937d0609cedSBarry Smith PetscOptionsEnd(); 29384222ddf1SHong Zhang } 29394222ddf1SHong Zhang if (flg) { 29409566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg])); 29414222ddf1SHong Zhang } 29424222ddf1SHong Zhang 29434222ddf1SHong Zhang C->ops->mattransposemultsymbolic = MatMatTransposeMultSymbolic_MPIDense_MPIDense; 29444222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_ABt; 29454222ddf1SHong Zhang PetscFunctionReturn(0); 29464222ddf1SHong Zhang } 29474222ddf1SHong Zhang 29484222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense(Mat C) 29494222ddf1SHong Zhang { 29504222ddf1SHong Zhang Mat_Product *product = C->product; 29514222ddf1SHong Zhang 29524222ddf1SHong Zhang PetscFunctionBegin; 29534222ddf1SHong Zhang switch (product->type) { 29544222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 29554222ddf1SHong Zhang case MATPRODUCT_AB: 29569566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIDense_AB(C)); 29574222ddf1SHong Zhang break; 29584222ddf1SHong Zhang #endif 29594222ddf1SHong Zhang case MATPRODUCT_AtB: 29609566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIDense_AtB(C)); 29614222ddf1SHong Zhang break; 29624222ddf1SHong Zhang case MATPRODUCT_ABt: 29639566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIDense_ABt(C)); 29644222ddf1SHong Zhang break; 29656718818eSStefano Zampini default: 29666718818eSStefano Zampini break; 29674222ddf1SHong Zhang } 29684222ddf1SHong Zhang PetscFunctionReturn(0); 29694222ddf1SHong Zhang } 2970