1be1d678aSKris Buschelman 2ed3cc1f0SBarry Smith /* 3ed3cc1f0SBarry Smith Basic functions for basic parallel dense matrices. 4ed3cc1f0SBarry Smith */ 5ed3cc1f0SBarry Smith 6c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h> /*I "petscmat.h" I*/ 78949adfdSHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 8baa3c1c6SHong Zhang #include <petscblaslapack.h> 98965ea79SLois Curfman McInnes 10ab92ecdeSBarry Smith /*@ 11ab92ecdeSBarry Smith 12ab92ecdeSBarry Smith MatDenseGetLocalMatrix - For a MATMPIDENSE or MATSEQDENSE matrix returns the sequential 13ab92ecdeSBarry Smith matrix that represents the operator. For sequential matrices it returns itself. 14ab92ecdeSBarry Smith 15ab92ecdeSBarry Smith Input Parameter: 16ab92ecdeSBarry Smith . A - the Seq or MPI dense matrix 17ab92ecdeSBarry Smith 18ab92ecdeSBarry Smith Output Parameter: 19ab92ecdeSBarry Smith . B - the inner matrix 20ab92ecdeSBarry Smith 218e6c10adSSatish Balay Level: intermediate 228e6c10adSSatish Balay 23ab92ecdeSBarry Smith @*/ 24ab92ecdeSBarry Smith PetscErrorCode MatDenseGetLocalMatrix(Mat A,Mat *B) 25ab92ecdeSBarry Smith { 26ab92ecdeSBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 27ab92ecdeSBarry Smith PetscErrorCode ierr; 28ace3abfcSBarry Smith PetscBool flg; 29ab92ecdeSBarry Smith 30ab92ecdeSBarry Smith PetscFunctionBegin; 31d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 32d5ea218eSStefano Zampini PetscValidPointer(B,2); 33251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIDENSE,&flg);CHKERRQ(ierr); 342205254eSKarl Rupp if (flg) *B = mat->A; 352205254eSKarl Rupp else *B = A; 36ab92ecdeSBarry Smith PetscFunctionReturn(0); 37ab92ecdeSBarry Smith } 38ab92ecdeSBarry Smith 39ba8c8a56SBarry Smith PetscErrorCode MatGetRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 40ba8c8a56SBarry Smith { 41ba8c8a56SBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 42ba8c8a56SBarry Smith PetscErrorCode ierr; 43d0f46423SBarry Smith PetscInt lrow,rstart = A->rmap->rstart,rend = A->rmap->rend; 44ba8c8a56SBarry Smith 45ba8c8a56SBarry Smith PetscFunctionBegin; 46e7e72b3dSBarry Smith if (row < rstart || row >= rend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows"); 47ba8c8a56SBarry Smith lrow = row - rstart; 48ba8c8a56SBarry Smith ierr = MatGetRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v);CHKERRQ(ierr); 49ba8c8a56SBarry Smith PetscFunctionReturn(0); 50ba8c8a56SBarry Smith } 51ba8c8a56SBarry Smith 52637a0070SStefano Zampini PetscErrorCode MatRestoreRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 53ba8c8a56SBarry Smith { 54637a0070SStefano Zampini Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 55ba8c8a56SBarry Smith PetscErrorCode ierr; 56637a0070SStefano Zampini PetscInt lrow,rstart = A->rmap->rstart,rend = A->rmap->rend; 57ba8c8a56SBarry Smith 58ba8c8a56SBarry Smith PetscFunctionBegin; 59637a0070SStefano Zampini if (row < rstart || row >= rend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows"); 60637a0070SStefano Zampini lrow = row - rstart; 61637a0070SStefano Zampini ierr = MatRestoreRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v);CHKERRQ(ierr); 62ba8c8a56SBarry Smith PetscFunctionReturn(0); 63ba8c8a56SBarry Smith } 64ba8c8a56SBarry Smith 6511bd1e4dSLisandro Dalcin PetscErrorCode MatGetDiagonalBlock_MPIDense(Mat A,Mat *a) 660de54da6SSatish Balay { 670de54da6SSatish Balay Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 686849ba73SBarry Smith PetscErrorCode ierr; 69d0f46423SBarry Smith PetscInt m = A->rmap->n,rstart = A->rmap->rstart; 7087828ca2SBarry Smith PetscScalar *array; 710de54da6SSatish Balay MPI_Comm comm; 724b6ae80fSStefano Zampini PetscBool flg; 7311bd1e4dSLisandro Dalcin Mat B; 740de54da6SSatish Balay 750de54da6SSatish Balay PetscFunctionBegin; 764b6ae80fSStefano Zampini ierr = MatHasCongruentLayouts(A,&flg);CHKERRQ(ierr); 774b6ae80fSStefano Zampini if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only square matrices supported."); 7811bd1e4dSLisandro Dalcin ierr = PetscObjectQuery((PetscObject)A,"DiagonalBlock",(PetscObject*)&B);CHKERRQ(ierr); 79616b8fbbSStefano Zampini if (!B) { /* This should use MatDenseGetSubMatrix (not create), but we would need a call like MatRestoreDiagonalBlock */ 804b6ae80fSStefano Zampini 814b6ae80fSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)mdn->A,MATSEQDENSECUDA,&flg);CHKERRQ(ierr); 824b6ae80fSStefano Zampini if (flg) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Not coded for %s. Send an email to petsc-dev@mcs.anl.gov to request this feature",MATSEQDENSECUDA); 830de54da6SSatish Balay ierr = PetscObjectGetComm((PetscObject)(mdn->A),&comm);CHKERRQ(ierr); 8411bd1e4dSLisandro Dalcin ierr = MatCreate(comm,&B);CHKERRQ(ierr); 8511bd1e4dSLisandro Dalcin ierr = MatSetSizes(B,m,m,m,m);CHKERRQ(ierr); 8611bd1e4dSLisandro Dalcin ierr = MatSetType(B,((PetscObject)mdn->A)->type_name);CHKERRQ(ierr); 874b6ae80fSStefano Zampini ierr = MatDenseGetArrayRead(mdn->A,(const PetscScalar**)&array);CHKERRQ(ierr); 8811bd1e4dSLisandro Dalcin ierr = MatSeqDenseSetPreallocation(B,array+m*rstart);CHKERRQ(ierr); 894b6ae80fSStefano Zampini ierr = MatDenseRestoreArrayRead(mdn->A,(const PetscScalar**)&array);CHKERRQ(ierr); 9011bd1e4dSLisandro Dalcin ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 9111bd1e4dSLisandro Dalcin ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 9211bd1e4dSLisandro Dalcin ierr = PetscObjectCompose((PetscObject)A,"DiagonalBlock",(PetscObject)B);CHKERRQ(ierr); 9311bd1e4dSLisandro Dalcin *a = B; 9411bd1e4dSLisandro Dalcin ierr = MatDestroy(&B);CHKERRQ(ierr); 952205254eSKarl Rupp } else *a = B; 960de54da6SSatish Balay PetscFunctionReturn(0); 970de54da6SSatish Balay } 980de54da6SSatish Balay 9913f74950SBarry Smith PetscErrorCode MatSetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],const PetscScalar v[],InsertMode addv) 1008965ea79SLois Curfman McInnes { 10139b7565bSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)mat->data; 102dfbe8321SBarry Smith PetscErrorCode ierr; 103d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 104ace3abfcSBarry Smith PetscBool roworiented = A->roworiented; 1058965ea79SLois Curfman McInnes 1063a40ed3dSBarry Smith PetscFunctionBegin; 1078965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 1085ef9f2a5SBarry Smith if (idxm[i] < 0) continue; 109e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 1108965ea79SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 1118965ea79SLois Curfman McInnes row = idxm[i] - rstart; 11239b7565bSBarry Smith if (roworiented) { 11339b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv);CHKERRQ(ierr); 1143a40ed3dSBarry Smith } else { 1158965ea79SLois Curfman McInnes for (j=0; j<n; j++) { 1165ef9f2a5SBarry Smith if (idxn[j] < 0) continue; 117e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 11839b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv);CHKERRQ(ierr); 11939b7565bSBarry Smith } 1208965ea79SLois Curfman McInnes } 1212205254eSKarl Rupp } else if (!A->donotstash) { 1225080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 12339b7565bSBarry Smith if (roworiented) { 124b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,idxm[i],n,idxn,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 125d36fbae8SSatish Balay } else { 126b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,idxm[i],n,idxn,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 12739b7565bSBarry Smith } 128b49de8d1SLois Curfman McInnes } 129b49de8d1SLois Curfman McInnes } 1303a40ed3dSBarry Smith PetscFunctionReturn(0); 131b49de8d1SLois Curfman McInnes } 132b49de8d1SLois Curfman McInnes 13313f74950SBarry Smith PetscErrorCode MatGetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 134b49de8d1SLois Curfman McInnes { 135b49de8d1SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 136dfbe8321SBarry Smith PetscErrorCode ierr; 137d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 138b49de8d1SLois Curfman McInnes 1393a40ed3dSBarry Smith PetscFunctionBegin; 140b49de8d1SLois Curfman McInnes for (i=0; i<m; i++) { 141e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); */ 142e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 143b49de8d1SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 144b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 145b49de8d1SLois Curfman McInnes for (j=0; j<n; j++) { 146e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); */ 147e7e72b3dSBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 148b49de8d1SLois Curfman McInnes ierr = MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j);CHKERRQ(ierr); 149b49de8d1SLois Curfman McInnes } 150e7e72b3dSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 1518965ea79SLois Curfman McInnes } 1523a40ed3dSBarry Smith PetscFunctionReturn(0); 1538965ea79SLois Curfman McInnes } 1548965ea79SLois Curfman McInnes 15549a6ff4bSBarry Smith static PetscErrorCode MatDenseGetLDA_MPIDense(Mat A,PetscInt *lda) 15649a6ff4bSBarry Smith { 15749a6ff4bSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 15849a6ff4bSBarry Smith PetscErrorCode ierr; 15949a6ff4bSBarry Smith 16049a6ff4bSBarry Smith PetscFunctionBegin; 16149a6ff4bSBarry Smith ierr = MatDenseGetLDA(a->A,lda);CHKERRQ(ierr); 16249a6ff4bSBarry Smith PetscFunctionReturn(0); 16349a6ff4bSBarry Smith } 16449a6ff4bSBarry Smith 165ad16ce7aSStefano Zampini static PetscErrorCode MatDenseSetLDA_MPIDense(Mat A,PetscInt lda) 166ad16ce7aSStefano Zampini { 167ad16ce7aSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 168*17359960SJose E. Roman PetscBool iscuda; 169ad16ce7aSStefano Zampini PetscErrorCode ierr; 170ad16ce7aSStefano Zampini 171ad16ce7aSStefano Zampini PetscFunctionBegin; 172*17359960SJose E. Roman if (!a->A) { 173*17359960SJose E. Roman if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 174*17359960SJose E. Roman ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr); 175*17359960SJose E. Roman ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr); 176*17359960SJose E. Roman ierr = MatCreate(PETSC_COMM_SELF,&a->A);CHKERRQ(ierr); 177*17359960SJose E. Roman ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)a->A);CHKERRQ(ierr); 178*17359960SJose E. Roman ierr = MatSetSizes(a->A,A->rmap->n,A->cmap->N,A->rmap->n,A->cmap->N);CHKERRQ(ierr); 179*17359960SJose E. Roman ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIDENSECUDA,&iscuda);CHKERRQ(ierr); 180*17359960SJose E. Roman ierr = MatSetType(a->A,iscuda ? MATSEQDENSECUDA : MATSEQDENSE);CHKERRQ(ierr); 181*17359960SJose E. Roman } 182ad16ce7aSStefano Zampini ierr = MatDenseSetLDA(a->A,lda);CHKERRQ(ierr); 183ad16ce7aSStefano Zampini PetscFunctionReturn(0); 184ad16ce7aSStefano Zampini } 185ad16ce7aSStefano Zampini 186637a0070SStefano Zampini static PetscErrorCode MatDenseGetArray_MPIDense(Mat A,PetscScalar **array) 187ff14e315SSatish Balay { 188ff14e315SSatish Balay Mat_MPIDense *a = (Mat_MPIDense*)A->data; 189dfbe8321SBarry Smith PetscErrorCode ierr; 190ff14e315SSatish Balay 1913a40ed3dSBarry Smith PetscFunctionBegin; 192616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1938c778c55SBarry Smith ierr = MatDenseGetArray(a->A,array);CHKERRQ(ierr); 1943a40ed3dSBarry Smith PetscFunctionReturn(0); 195ff14e315SSatish Balay } 196ff14e315SSatish Balay 197637a0070SStefano Zampini static PetscErrorCode MatDenseGetArrayRead_MPIDense(Mat A,const PetscScalar **array) 1988572280aSBarry Smith { 1998572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 2008572280aSBarry Smith PetscErrorCode ierr; 2018572280aSBarry Smith 2028572280aSBarry Smith PetscFunctionBegin; 203616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2048572280aSBarry Smith ierr = MatDenseGetArrayRead(a->A,array);CHKERRQ(ierr); 2058572280aSBarry Smith PetscFunctionReturn(0); 2068572280aSBarry Smith } 2078572280aSBarry Smith 2086947451fSStefano Zampini static PetscErrorCode MatDenseGetArrayWrite_MPIDense(Mat A,PetscScalar **array) 2096947451fSStefano Zampini { 2106947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 2116947451fSStefano Zampini PetscErrorCode ierr; 2126947451fSStefano Zampini 2136947451fSStefano Zampini PetscFunctionBegin; 214616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2156947451fSStefano Zampini ierr = MatDenseGetArrayWrite(a->A,array);CHKERRQ(ierr); 2166947451fSStefano Zampini PetscFunctionReturn(0); 2176947451fSStefano Zampini } 2186947451fSStefano Zampini 219637a0070SStefano Zampini static PetscErrorCode MatDensePlaceArray_MPIDense(Mat A,const PetscScalar *array) 220d3042a70SBarry Smith { 221d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 222d3042a70SBarry Smith PetscErrorCode ierr; 223d3042a70SBarry Smith 224d3042a70SBarry Smith PetscFunctionBegin; 225616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 226616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 227d3042a70SBarry Smith ierr = MatDensePlaceArray(a->A,array);CHKERRQ(ierr); 228d3042a70SBarry Smith PetscFunctionReturn(0); 229d3042a70SBarry Smith } 230d3042a70SBarry Smith 231d3042a70SBarry Smith static PetscErrorCode MatDenseResetArray_MPIDense(Mat A) 232d3042a70SBarry Smith { 233d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 234d3042a70SBarry Smith PetscErrorCode ierr; 235d3042a70SBarry Smith 236d3042a70SBarry Smith PetscFunctionBegin; 237616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 238616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 239d3042a70SBarry Smith ierr = MatDenseResetArray(a->A);CHKERRQ(ierr); 240d3042a70SBarry Smith PetscFunctionReturn(0); 241d3042a70SBarry Smith } 242d3042a70SBarry Smith 243d5ea218eSStefano Zampini static PetscErrorCode MatDenseReplaceArray_MPIDense(Mat A,const PetscScalar *array) 244d5ea218eSStefano Zampini { 245d5ea218eSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 246d5ea218eSStefano Zampini PetscErrorCode ierr; 247d5ea218eSStefano Zampini 248d5ea218eSStefano Zampini PetscFunctionBegin; 249616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 250616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 251d5ea218eSStefano Zampini ierr = MatDenseReplaceArray(a->A,array);CHKERRQ(ierr); 252d5ea218eSStefano Zampini PetscFunctionReturn(0); 253d5ea218eSStefano Zampini } 254d5ea218eSStefano Zampini 2557dae84e0SHong Zhang static PetscErrorCode MatCreateSubMatrix_MPIDense(Mat A,IS isrow,IS iscol,MatReuse scall,Mat *B) 256ca3fa75bSLois Curfman McInnes { 257ca3fa75bSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data,*newmatd; 2586849ba73SBarry Smith PetscErrorCode ierr; 259637a0070SStefano Zampini PetscInt lda,i,j,rstart,rend,nrows,ncols,Ncols,nlrows,nlcols; 2605d0c19d7SBarry Smith const PetscInt *irow,*icol; 261637a0070SStefano Zampini const PetscScalar *v; 262637a0070SStefano Zampini PetscScalar *bv; 263ca3fa75bSLois Curfman McInnes Mat newmat; 2644aa3045dSJed Brown IS iscol_local; 26542a884f0SBarry Smith MPI_Comm comm_is,comm_mat; 266ca3fa75bSLois Curfman McInnes 267ca3fa75bSLois Curfman McInnes PetscFunctionBegin; 26842a884f0SBarry Smith ierr = PetscObjectGetComm((PetscObject)A,&comm_mat);CHKERRQ(ierr); 26942a884f0SBarry Smith ierr = PetscObjectGetComm((PetscObject)iscol,&comm_is);CHKERRQ(ierr); 27042a884f0SBarry Smith if (comm_mat != comm_is) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NOTSAMECOMM,"IS communicator must match matrix communicator"); 27142a884f0SBarry Smith 2724aa3045dSJed Brown ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 273ca3fa75bSLois Curfman McInnes ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr); 2744aa3045dSJed Brown ierr = ISGetIndices(iscol_local,&icol);CHKERRQ(ierr); 275b9b97703SBarry Smith ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr); 276b9b97703SBarry Smith ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr); 2774aa3045dSJed Brown ierr = ISGetSize(iscol,&Ncols);CHKERRQ(ierr); /* global number of columns, size of iscol_local */ 278ca3fa75bSLois Curfman McInnes 279ca3fa75bSLois Curfman McInnes /* No parallel redistribution currently supported! Should really check each index set 2807eba5e9cSLois Curfman McInnes to comfirm that it is OK. ... Currently supports only submatrix same partitioning as 2817eba5e9cSLois Curfman McInnes original matrix! */ 282ca3fa75bSLois Curfman McInnes 283ca3fa75bSLois Curfman McInnes ierr = MatGetLocalSize(A,&nlrows,&nlcols);CHKERRQ(ierr); 2847eba5e9cSLois Curfman McInnes ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr); 285ca3fa75bSLois Curfman McInnes 286ca3fa75bSLois Curfman McInnes /* Check submatrix call */ 287ca3fa75bSLois Curfman McInnes if (scall == MAT_REUSE_MATRIX) { 288e32f2f54SBarry Smith /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */ 2897eba5e9cSLois Curfman McInnes /* Really need to test rows and column sizes! */ 290ca3fa75bSLois Curfman McInnes newmat = *B; 291ca3fa75bSLois Curfman McInnes } else { 292ca3fa75bSLois Curfman McInnes /* Create and fill new matrix */ 293ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&newmat);CHKERRQ(ierr); 2944aa3045dSJed Brown ierr = MatSetSizes(newmat,nrows,ncols,PETSC_DECIDE,Ncols);CHKERRQ(ierr); 2957adad957SLisandro Dalcin ierr = MatSetType(newmat,((PetscObject)A)->type_name);CHKERRQ(ierr); 2960298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr); 297ca3fa75bSLois Curfman McInnes } 298ca3fa75bSLois Curfman McInnes 299ca3fa75bSLois Curfman McInnes /* Now extract the data pointers and do the copy, column at a time */ 300ca3fa75bSLois Curfman McInnes newmatd = (Mat_MPIDense*)newmat->data; 301637a0070SStefano Zampini ierr = MatDenseGetArray(newmatd->A,&bv);CHKERRQ(ierr); 302637a0070SStefano Zampini ierr = MatDenseGetArrayRead(mat->A,&v);CHKERRQ(ierr); 303637a0070SStefano Zampini ierr = MatDenseGetLDA(mat->A,&lda);CHKERRQ(ierr); 3044aa3045dSJed Brown for (i=0; i<Ncols; i++) { 305637a0070SStefano Zampini const PetscScalar *av = v + lda*icol[i]; 306ca3fa75bSLois Curfman McInnes for (j=0; j<nrows; j++) { 3077eba5e9cSLois Curfman McInnes *bv++ = av[irow[j] - rstart]; 308ca3fa75bSLois Curfman McInnes } 309ca3fa75bSLois Curfman McInnes } 310637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(mat->A,&v);CHKERRQ(ierr); 311637a0070SStefano Zampini ierr = MatDenseRestoreArray(newmatd->A,&bv);CHKERRQ(ierr); 312ca3fa75bSLois Curfman McInnes 313ca3fa75bSLois Curfman McInnes /* Assemble the matrices so that the correct flags are set */ 314ca3fa75bSLois Curfman McInnes ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 315ca3fa75bSLois Curfman McInnes ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 316ca3fa75bSLois Curfman McInnes 317ca3fa75bSLois Curfman McInnes /* Free work space */ 318ca3fa75bSLois Curfman McInnes ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr); 3195bdf786aSShri Abhyankar ierr = ISRestoreIndices(iscol_local,&icol);CHKERRQ(ierr); 32032bb1f2dSLisandro Dalcin ierr = ISDestroy(&iscol_local);CHKERRQ(ierr); 321ca3fa75bSLois Curfman McInnes *B = newmat; 322ca3fa75bSLois Curfman McInnes PetscFunctionReturn(0); 323ca3fa75bSLois Curfman McInnes } 324ca3fa75bSLois Curfman McInnes 325637a0070SStefano Zampini PetscErrorCode MatDenseRestoreArray_MPIDense(Mat A,PetscScalar **array) 326ff14e315SSatish Balay { 32773a71a0fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 32873a71a0fSBarry Smith PetscErrorCode ierr; 32973a71a0fSBarry Smith 3303a40ed3dSBarry Smith PetscFunctionBegin; 3318c778c55SBarry Smith ierr = MatDenseRestoreArray(a->A,array);CHKERRQ(ierr); 3323a40ed3dSBarry Smith PetscFunctionReturn(0); 333ff14e315SSatish Balay } 334ff14e315SSatish Balay 335637a0070SStefano Zampini PetscErrorCode MatDenseRestoreArrayRead_MPIDense(Mat A,const PetscScalar **array) 3368572280aSBarry Smith { 3378572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 3388572280aSBarry Smith PetscErrorCode ierr; 3398572280aSBarry Smith 3408572280aSBarry Smith PetscFunctionBegin; 3418572280aSBarry Smith ierr = MatDenseRestoreArrayRead(a->A,array);CHKERRQ(ierr); 3428572280aSBarry Smith PetscFunctionReturn(0); 3438572280aSBarry Smith } 3448572280aSBarry Smith 3456947451fSStefano Zampini PetscErrorCode MatDenseRestoreArrayWrite_MPIDense(Mat A,PetscScalar **array) 3466947451fSStefano Zampini { 3476947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 3486947451fSStefano Zampini PetscErrorCode ierr; 3496947451fSStefano Zampini 3506947451fSStefano Zampini PetscFunctionBegin; 3516947451fSStefano Zampini ierr = MatDenseRestoreArrayWrite(a->A,array);CHKERRQ(ierr); 3526947451fSStefano Zampini PetscFunctionReturn(0); 3536947451fSStefano Zampini } 3546947451fSStefano Zampini 355dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode) 3568965ea79SLois Curfman McInnes { 35739ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 358dfbe8321SBarry Smith PetscErrorCode ierr; 35913f74950SBarry Smith PetscInt nstash,reallocs; 3608965ea79SLois Curfman McInnes 3613a40ed3dSBarry Smith PetscFunctionBegin; 362910cf402Sprj- if (mdn->donotstash || mat->nooffprocentries) return(0); 3638965ea79SLois Curfman McInnes 364d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 3658798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 366ae15b995SBarry Smith ierr = PetscInfo2(mdn->A,"Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 3673a40ed3dSBarry Smith PetscFunctionReturn(0); 3688965ea79SLois Curfman McInnes } 3698965ea79SLois Curfman McInnes 370dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode) 3718965ea79SLois Curfman McInnes { 37239ddd567SLois Curfman McInnes Mat_MPIDense *mdn=(Mat_MPIDense*)mat->data; 3736849ba73SBarry Smith PetscErrorCode ierr; 37413f74950SBarry Smith PetscInt i,*row,*col,flg,j,rstart,ncols; 37513f74950SBarry Smith PetscMPIInt n; 37687828ca2SBarry Smith PetscScalar *val; 3778965ea79SLois Curfman McInnes 3783a40ed3dSBarry Smith PetscFunctionBegin; 379910cf402Sprj- if (!mdn->donotstash && !mat->nooffprocentries) { 3808965ea79SLois Curfman McInnes /* wait on receives */ 3817ef1d9bdSSatish Balay while (1) { 3828798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 3837ef1d9bdSSatish Balay if (!flg) break; 3848965ea79SLois Curfman McInnes 3857ef1d9bdSSatish Balay for (i=0; i<n;) { 3867ef1d9bdSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 3872205254eSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 3882205254eSKarl Rupp if (row[j] != rstart) break; 3892205254eSKarl Rupp } 3907ef1d9bdSSatish Balay if (j < n) ncols = j-i; 3917ef1d9bdSSatish Balay else ncols = n-i; 3927ef1d9bdSSatish Balay /* Now assemble all these values with a single function call */ 3934b4eb8d3SJed Brown ierr = MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr); 3947ef1d9bdSSatish Balay i = j; 3958965ea79SLois Curfman McInnes } 3967ef1d9bdSSatish Balay } 3978798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 398910cf402Sprj- } 3998965ea79SLois Curfman McInnes 40039ddd567SLois Curfman McInnes ierr = MatAssemblyBegin(mdn->A,mode);CHKERRQ(ierr); 40139ddd567SLois Curfman McInnes ierr = MatAssemblyEnd(mdn->A,mode);CHKERRQ(ierr); 4028965ea79SLois Curfman McInnes 4036d4a8577SBarry Smith if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 40439ddd567SLois Curfman McInnes ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 4058965ea79SLois Curfman McInnes } 4063a40ed3dSBarry Smith PetscFunctionReturn(0); 4078965ea79SLois Curfman McInnes } 4088965ea79SLois Curfman McInnes 409dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIDense(Mat A) 4108965ea79SLois Curfman McInnes { 411dfbe8321SBarry Smith PetscErrorCode ierr; 41239ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 4133a40ed3dSBarry Smith 4143a40ed3dSBarry Smith PetscFunctionBegin; 4153a40ed3dSBarry Smith ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 4163a40ed3dSBarry Smith PetscFunctionReturn(0); 4178965ea79SLois Curfman McInnes } 4188965ea79SLois Curfman McInnes 419637a0070SStefano Zampini PetscErrorCode MatZeroRows_MPIDense(Mat A,PetscInt n,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 4208965ea79SLois Curfman McInnes { 42139ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 4226849ba73SBarry Smith PetscErrorCode ierr; 423637a0070SStefano Zampini PetscInt i,len,*lrows; 424637a0070SStefano Zampini 425637a0070SStefano Zampini PetscFunctionBegin; 426637a0070SStefano Zampini /* get locally owned rows */ 427637a0070SStefano Zampini ierr = PetscLayoutMapLocal(A->rmap,n,rows,&len,&lrows,NULL);CHKERRQ(ierr); 428637a0070SStefano Zampini /* fix right hand side if needed */ 429637a0070SStefano Zampini if (x && b) { 43097b48c8fSBarry Smith const PetscScalar *xx; 43197b48c8fSBarry Smith PetscScalar *bb; 4328965ea79SLois Curfman McInnes 43397b48c8fSBarry Smith ierr = VecGetArrayRead(x, &xx);CHKERRQ(ierr); 434637a0070SStefano Zampini ierr = VecGetArrayWrite(b, &bb);CHKERRQ(ierr); 435637a0070SStefano Zampini for (i=0;i<len;++i) bb[lrows[i]] = diag*xx[lrows[i]]; 43697b48c8fSBarry Smith ierr = VecRestoreArrayRead(x, &xx);CHKERRQ(ierr); 437637a0070SStefano Zampini ierr = VecRestoreArrayWrite(b, &bb);CHKERRQ(ierr); 43897b48c8fSBarry Smith } 439637a0070SStefano Zampini ierr = MatZeroRows(l->A,len,lrows,0.0,NULL,NULL);CHKERRQ(ierr); 440e2eb51b1SBarry Smith if (diag != 0.0) { 441637a0070SStefano Zampini Vec d; 442b9679d65SBarry Smith 443637a0070SStefano Zampini ierr = MatCreateVecs(A,NULL,&d);CHKERRQ(ierr); 444637a0070SStefano Zampini ierr = VecSet(d,diag);CHKERRQ(ierr); 445637a0070SStefano Zampini ierr = MatDiagonalSet(A,d,INSERT_VALUES);CHKERRQ(ierr); 446637a0070SStefano Zampini ierr = VecDestroy(&d);CHKERRQ(ierr); 447b9679d65SBarry Smith } 448606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 4493a40ed3dSBarry Smith PetscFunctionReturn(0); 4508965ea79SLois Curfman McInnes } 4518965ea79SLois Curfman McInnes 452cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMult_SeqDense(Mat,Vec,Vec); 453cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultAdd_SeqDense(Mat,Vec,Vec,Vec); 454cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTranspose_SeqDense(Mat,Vec,Vec); 455cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTransposeAdd_SeqDense(Mat,Vec,Vec,Vec); 456cc2e6a90SBarry Smith 457dfbe8321SBarry Smith PetscErrorCode MatMult_MPIDense(Mat mat,Vec xx,Vec yy) 4588965ea79SLois Curfman McInnes { 45939ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 460dfbe8321SBarry Smith PetscErrorCode ierr; 461637a0070SStefano Zampini const PetscScalar *ax; 462637a0070SStefano Zampini PetscScalar *ay; 463c456f294SBarry Smith 4643a40ed3dSBarry Smith PetscFunctionBegin; 465637a0070SStefano Zampini ierr = VecGetArrayReadInPlace(xx,&ax);CHKERRQ(ierr); 466637a0070SStefano Zampini ierr = VecGetArrayInPlace(mdn->lvec,&ay);CHKERRQ(ierr); 467637a0070SStefano Zampini ierr = PetscSFBcastBegin(mdn->Mvctx,MPIU_SCALAR,ax,ay);CHKERRQ(ierr); 468637a0070SStefano Zampini ierr = PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ax,ay);CHKERRQ(ierr); 469637a0070SStefano Zampini ierr = VecRestoreArrayInPlace(mdn->lvec,&ay);CHKERRQ(ierr); 470637a0070SStefano Zampini ierr = VecRestoreArrayReadInPlace(xx,&ax);CHKERRQ(ierr); 471637a0070SStefano Zampini ierr = (*mdn->A->ops->mult)(mdn->A,mdn->lvec,yy);CHKERRQ(ierr); 4723a40ed3dSBarry Smith PetscFunctionReturn(0); 4738965ea79SLois Curfman McInnes } 4748965ea79SLois Curfman McInnes 475dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz) 4768965ea79SLois Curfman McInnes { 47739ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 478dfbe8321SBarry Smith PetscErrorCode ierr; 479637a0070SStefano Zampini const PetscScalar *ax; 480637a0070SStefano Zampini PetscScalar *ay; 481c456f294SBarry Smith 4823a40ed3dSBarry Smith PetscFunctionBegin; 483637a0070SStefano Zampini ierr = VecGetArrayReadInPlace(xx,&ax);CHKERRQ(ierr); 484637a0070SStefano Zampini ierr = VecGetArrayInPlace(mdn->lvec,&ay);CHKERRQ(ierr); 485637a0070SStefano Zampini ierr = PetscSFBcastBegin(mdn->Mvctx,MPIU_SCALAR,ax,ay);CHKERRQ(ierr); 486637a0070SStefano Zampini ierr = PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ax,ay);CHKERRQ(ierr); 487637a0070SStefano Zampini ierr = VecRestoreArrayInPlace(mdn->lvec,&ay);CHKERRQ(ierr); 488637a0070SStefano Zampini ierr = VecRestoreArrayReadInPlace(xx,&ax);CHKERRQ(ierr); 489637a0070SStefano Zampini ierr = (*mdn->A->ops->multadd)(mdn->A,mdn->lvec,yy,zz);CHKERRQ(ierr); 4903a40ed3dSBarry Smith PetscFunctionReturn(0); 4918965ea79SLois Curfman McInnes } 4928965ea79SLois Curfman McInnes 493dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIDense(Mat A,Vec xx,Vec yy) 494096963f5SLois Curfman McInnes { 495096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 496dfbe8321SBarry Smith PetscErrorCode ierr; 497637a0070SStefano Zampini const PetscScalar *ax; 498637a0070SStefano Zampini PetscScalar *ay; 499096963f5SLois Curfman McInnes 5003a40ed3dSBarry Smith PetscFunctionBegin; 501637a0070SStefano Zampini ierr = VecSet(yy,0.0);CHKERRQ(ierr); 502637a0070SStefano Zampini ierr = (*a->A->ops->multtranspose)(a->A,xx,a->lvec);CHKERRQ(ierr); 503637a0070SStefano Zampini ierr = VecGetArrayReadInPlace(a->lvec,&ax);CHKERRQ(ierr); 504637a0070SStefano Zampini ierr = VecGetArrayInPlace(yy,&ay);CHKERRQ(ierr); 505637a0070SStefano Zampini ierr = PetscSFReduceBegin(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM);CHKERRQ(ierr); 506637a0070SStefano Zampini ierr = PetscSFReduceEnd(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM);CHKERRQ(ierr); 507637a0070SStefano Zampini ierr = VecRestoreArrayReadInPlace(a->lvec,&ax);CHKERRQ(ierr); 508637a0070SStefano Zampini ierr = VecRestoreArrayInPlace(yy,&ay);CHKERRQ(ierr); 5093a40ed3dSBarry Smith PetscFunctionReturn(0); 510096963f5SLois Curfman McInnes } 511096963f5SLois Curfman McInnes 512dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz) 513096963f5SLois Curfman McInnes { 514096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 515dfbe8321SBarry Smith PetscErrorCode ierr; 516637a0070SStefano Zampini const PetscScalar *ax; 517637a0070SStefano Zampini PetscScalar *ay; 518096963f5SLois Curfman McInnes 5193a40ed3dSBarry Smith PetscFunctionBegin; 5203501a2bdSLois Curfman McInnes ierr = VecCopy(yy,zz);CHKERRQ(ierr); 521637a0070SStefano Zampini ierr = (*a->A->ops->multtranspose)(a->A,xx,a->lvec);CHKERRQ(ierr); 522637a0070SStefano Zampini ierr = VecGetArrayReadInPlace(a->lvec,&ax);CHKERRQ(ierr); 523637a0070SStefano Zampini ierr = VecGetArrayInPlace(zz,&ay);CHKERRQ(ierr); 524637a0070SStefano Zampini ierr = PetscSFReduceBegin(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM);CHKERRQ(ierr); 525637a0070SStefano Zampini ierr = PetscSFReduceEnd(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM);CHKERRQ(ierr); 526637a0070SStefano Zampini ierr = VecRestoreArrayReadInPlace(a->lvec,&ax);CHKERRQ(ierr); 527637a0070SStefano Zampini ierr = VecRestoreArrayInPlace(zz,&ay);CHKERRQ(ierr); 5283a40ed3dSBarry Smith PetscFunctionReturn(0); 529096963f5SLois Curfman McInnes } 530096963f5SLois Curfman McInnes 531dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIDense(Mat A,Vec v) 5328965ea79SLois Curfman McInnes { 53339ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 534dfbe8321SBarry Smith PetscErrorCode ierr; 535637a0070SStefano Zampini PetscInt lda,len,i,n,m = A->rmap->n,radd; 53687828ca2SBarry Smith PetscScalar *x,zero = 0.0; 537637a0070SStefano Zampini const PetscScalar *av; 538ed3cc1f0SBarry Smith 5393a40ed3dSBarry Smith PetscFunctionBegin; 5402dcb1b2aSMatthew Knepley ierr = VecSet(v,zero);CHKERRQ(ierr); 5411ebc52fbSHong Zhang ierr = VecGetArray(v,&x);CHKERRQ(ierr); 542096963f5SLois Curfman McInnes ierr = VecGetSize(v,&n);CHKERRQ(ierr); 543e32f2f54SBarry Smith if (n != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec"); 544d0f46423SBarry Smith len = PetscMin(a->A->rmap->n,a->A->cmap->n); 545d0f46423SBarry Smith radd = A->rmap->rstart*m; 546637a0070SStefano Zampini ierr = MatDenseGetArrayRead(a->A,&av);CHKERRQ(ierr); 547637a0070SStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 54844cd7ae7SLois Curfman McInnes for (i=0; i<len; i++) { 549637a0070SStefano Zampini x[i] = av[radd + i*lda + i]; 550096963f5SLois Curfman McInnes } 551637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(a->A,&av);CHKERRQ(ierr); 5521ebc52fbSHong Zhang ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 5533a40ed3dSBarry Smith PetscFunctionReturn(0); 5548965ea79SLois Curfman McInnes } 5558965ea79SLois Curfman McInnes 556dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIDense(Mat mat) 5578965ea79SLois Curfman McInnes { 5583501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 559dfbe8321SBarry Smith PetscErrorCode ierr; 560ed3cc1f0SBarry Smith 5613a40ed3dSBarry Smith PetscFunctionBegin; 562aa482453SBarry Smith #if defined(PETSC_USE_LOG) 563d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D, Cols=%D",mat->rmap->N,mat->cmap->N); 5648965ea79SLois Curfman McInnes #endif 5658798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 566616b8fbbSStefano Zampini if (mdn->vecinuse) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 567616b8fbbSStefano Zampini if (mdn->matinuse) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 5686bf464f9SBarry Smith ierr = MatDestroy(&mdn->A);CHKERRQ(ierr); 5696bf464f9SBarry Smith ierr = VecDestroy(&mdn->lvec);CHKERRQ(ierr); 570637a0070SStefano Zampini ierr = PetscSFDestroy(&mdn->Mvctx);CHKERRQ(ierr); 5716947451fSStefano Zampini ierr = VecDestroy(&mdn->cvec);CHKERRQ(ierr); 5725ea7661aSPierre Jolivet ierr = MatDestroy(&mdn->cmat);CHKERRQ(ierr); 57301b82886SBarry Smith 574bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 575dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 5768baccfbdSHong Zhang 57749a6ff4bSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",NULL);CHKERRQ(ierr); 578ad16ce7aSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseSetLDA_C",NULL);CHKERRQ(ierr); 5798baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",NULL);CHKERRQ(ierr); 5808572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",NULL);CHKERRQ(ierr); 5818572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",NULL);CHKERRQ(ierr); 5828572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",NULL);CHKERRQ(ierr); 5836947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayWrite_C",NULL);CHKERRQ(ierr); 5846947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayWrite_C",NULL);CHKERRQ(ierr); 585d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",NULL);CHKERRQ(ierr); 586d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",NULL);CHKERRQ(ierr); 587d5ea218eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseReplaceArray_C",NULL);CHKERRQ(ierr); 5888baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 5898baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",NULL);CHKERRQ(ierr); 5908baccfbdSHong Zhang #endif 591d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 592d24d4204SJose E. Roman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_scalapack_C",NULL);CHKERRQ(ierr); 593d24d4204SJose E. Roman #endif 594bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",NULL);CHKERRQ(ierr); 5954222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 5964222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaij_C",NULL);CHKERRQ(ierr); 5976718818eSStefano Zampini #if defined (PETSC_HAVE_CUDA) 5986718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaijcusparse_mpidense_C",NULL);CHKERRQ(ierr); 5996718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaijcusparse_C",NULL);CHKERRQ(ierr); 6006718818eSStefano Zampini #endif 60186aefd0dSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",NULL);CHKERRQ(ierr); 60286aefd0dSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",NULL);CHKERRQ(ierr); 6036947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",NULL);CHKERRQ(ierr); 6046947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",NULL);CHKERRQ(ierr); 6056947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",NULL);CHKERRQ(ierr); 6066947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",NULL);CHKERRQ(ierr); 6076947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",NULL);CHKERRQ(ierr); 6086947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",NULL);CHKERRQ(ierr); 6095ea7661aSPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetSubMatrix_C",NULL);CHKERRQ(ierr); 6105ea7661aSPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreSubMatrix_C",NULL);CHKERRQ(ierr); 6113a40ed3dSBarry Smith PetscFunctionReturn(0); 6128965ea79SLois Curfman McInnes } 61339ddd567SLois Curfman McInnes 61452c5f739Sprj- PETSC_INTERN PetscErrorCode MatView_SeqDense(Mat,PetscViewer); 61552c5f739Sprj- 6169804daf3SBarry Smith #include <petscdraw.h> 6176849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 6188965ea79SLois Curfman McInnes { 61939ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 620dfbe8321SBarry Smith PetscErrorCode ierr; 621616b8fbbSStefano Zampini PetscMPIInt rank; 62219fd82e9SBarry Smith PetscViewerType vtype; 623ace3abfcSBarry Smith PetscBool iascii,isdraw; 624b0a32e0cSBarry Smith PetscViewer sviewer; 625f3ef73ceSBarry Smith PetscViewerFormat format; 6268965ea79SLois Curfman McInnes 6273a40ed3dSBarry Smith PetscFunctionBegin; 628616b8fbbSStefano Zampini ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr); 629251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 630251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 63132077d6dSBarry Smith if (iascii) { 632b0a32e0cSBarry Smith ierr = PetscViewerGetType(viewer,&vtype);CHKERRQ(ierr); 633b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 634456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 6354e220ebcSLois Curfman McInnes MatInfo info; 636888f2ed8SSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 6371575c14dSBarry Smith ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr); 6387b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer," [%d] local rows %D nz %D nz alloced %D mem %D \n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory);CHKERRQ(ierr); 639b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 6401575c14dSBarry Smith ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr); 641637a0070SStefano Zampini ierr = PetscSFView(mdn->Mvctx,viewer);CHKERRQ(ierr); 6423a40ed3dSBarry Smith PetscFunctionReturn(0); 643fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 6443a40ed3dSBarry Smith PetscFunctionReturn(0); 6458965ea79SLois Curfman McInnes } 646f1af5d2fSBarry Smith } else if (isdraw) { 647b0a32e0cSBarry Smith PetscDraw draw; 648ace3abfcSBarry Smith PetscBool isnull; 649f1af5d2fSBarry Smith 650b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 651b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 652f1af5d2fSBarry Smith if (isnull) PetscFunctionReturn(0); 653f1af5d2fSBarry Smith } 65477ed5343SBarry Smith 6557da1fb6eSBarry Smith { 6568965ea79SLois Curfman McInnes /* assemble the entire matrix onto first processor. */ 6578965ea79SLois Curfman McInnes Mat A; 658d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,m,row,i,nz; 659ba8c8a56SBarry Smith PetscInt *cols; 660ba8c8a56SBarry Smith PetscScalar *vals; 6618965ea79SLois Curfman McInnes 662ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr); 6638965ea79SLois Curfman McInnes if (!rank) { 664f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 6653a40ed3dSBarry Smith } else { 666f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 6678965ea79SLois Curfman McInnes } 6687adad957SLisandro Dalcin /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */ 669878740d9SKris Buschelman ierr = MatSetType(A,MATMPIDENSE);CHKERRQ(ierr); 6700298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(A,NULL);CHKERRQ(ierr); 6713bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr); 6728965ea79SLois Curfman McInnes 67339ddd567SLois Curfman McInnes /* Copy the matrix ... This isn't the most efficient means, 67439ddd567SLois Curfman McInnes but it's quick for now */ 67551022da4SBarry Smith A->insertmode = INSERT_VALUES; 6762205254eSKarl Rupp 6772205254eSKarl Rupp row = mat->rmap->rstart; 6782205254eSKarl Rupp m = mdn->A->rmap->n; 6798965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 680ba8c8a56SBarry Smith ierr = MatGetRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 681ba8c8a56SBarry Smith ierr = MatSetValues_MPIDense(A,1,&row,nz,cols,vals,INSERT_VALUES);CHKERRQ(ierr); 682ba8c8a56SBarry Smith ierr = MatRestoreRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 68339ddd567SLois Curfman McInnes row++; 6848965ea79SLois Curfman McInnes } 6858965ea79SLois Curfman McInnes 6866d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 6876d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 6883f08860eSBarry Smith ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 689b9b97703SBarry Smith if (!rank) { 6901a9d3c3cSBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPIDense*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr); 6917da1fb6eSBarry Smith ierr = MatView_SeqDense(((Mat_MPIDense*)(A->data))->A,sviewer);CHKERRQ(ierr); 6928965ea79SLois Curfman McInnes } 6933f08860eSBarry Smith ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 694b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 6956bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 6968965ea79SLois Curfman McInnes } 6973a40ed3dSBarry Smith PetscFunctionReturn(0); 6988965ea79SLois Curfman McInnes } 6998965ea79SLois Curfman McInnes 700dfbe8321SBarry Smith PetscErrorCode MatView_MPIDense(Mat mat,PetscViewer viewer) 7018965ea79SLois Curfman McInnes { 702dfbe8321SBarry Smith PetscErrorCode ierr; 703ace3abfcSBarry Smith PetscBool iascii,isbinary,isdraw,issocket; 7048965ea79SLois Curfman McInnes 705433994e6SBarry Smith PetscFunctionBegin; 706251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 707251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 708251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 709251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 7100f5bd95cSBarry Smith 71132077d6dSBarry Smith if (iascii || issocket || isdraw) { 712f1af5d2fSBarry Smith ierr = MatView_MPIDense_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 7130f5bd95cSBarry Smith } else if (isbinary) { 7148491ab44SLisandro Dalcin ierr = MatView_Dense_Binary(mat,viewer);CHKERRQ(ierr); 71511aeaf0aSBarry Smith } 7163a40ed3dSBarry Smith PetscFunctionReturn(0); 7178965ea79SLois Curfman McInnes } 7188965ea79SLois Curfman McInnes 719dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info) 7208965ea79SLois Curfman McInnes { 7213501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 7223501a2bdSLois Curfman McInnes Mat mdn = mat->A; 723dfbe8321SBarry Smith PetscErrorCode ierr; 7243966268fSBarry Smith PetscLogDouble isend[5],irecv[5]; 7258965ea79SLois Curfman McInnes 7263a40ed3dSBarry Smith PetscFunctionBegin; 7274e220ebcSLois Curfman McInnes info->block_size = 1.0; 7282205254eSKarl Rupp 7294e220ebcSLois Curfman McInnes ierr = MatGetInfo(mdn,MAT_LOCAL,info);CHKERRQ(ierr); 7302205254eSKarl Rupp 7314e220ebcSLois Curfman McInnes isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 7324e220ebcSLois Curfman McInnes isend[3] = info->memory; isend[4] = info->mallocs; 7338965ea79SLois Curfman McInnes if (flag == MAT_LOCAL) { 7344e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 7354e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 7364e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 7374e220ebcSLois Curfman McInnes info->memory = isend[3]; 7384e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 7398965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 7403966268fSBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 7412205254eSKarl Rupp 7424e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7434e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7444e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7454e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7464e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7478965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 7483966268fSBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 7492205254eSKarl Rupp 7504e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7514e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7524e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7534e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7544e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7558965ea79SLois Curfman McInnes } 7564e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 7574e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 7584e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 7593a40ed3dSBarry Smith PetscFunctionReturn(0); 7608965ea79SLois Curfman McInnes } 7618965ea79SLois Curfman McInnes 762ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIDense(Mat A,MatOption op,PetscBool flg) 7638965ea79SLois Curfman McInnes { 76439ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 765dfbe8321SBarry Smith PetscErrorCode ierr; 7668965ea79SLois Curfman McInnes 7673a40ed3dSBarry Smith PetscFunctionBegin; 76812c028f9SKris Buschelman switch (op) { 769512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 77012c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 77112c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 77243674050SBarry Smith MatCheckPreallocated(A,1); 7734e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 77412c028f9SKris Buschelman break; 77512c028f9SKris Buschelman case MAT_ROW_ORIENTED: 77643674050SBarry Smith MatCheckPreallocated(A,1); 7774e0d8c25SBarry Smith a->roworiented = flg; 7784e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 77912c028f9SKris Buschelman break; 7804e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 78113fa8e87SLisandro Dalcin case MAT_KEEP_NONZERO_PATTERN: 78212c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 783071fcb05SBarry Smith case MAT_SORTED_FULL: 784290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 78512c028f9SKris Buschelman break; 78612c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 7874e0d8c25SBarry Smith a->donotstash = flg; 78812c028f9SKris Buschelman break; 78977e54ba9SKris Buschelman case MAT_SYMMETRIC: 79077e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 7919a4540c5SBarry Smith case MAT_HERMITIAN: 7929a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 793600fe468SBarry Smith case MAT_IGNORE_LOWER_TRIANGULAR: 7945d7aebe8SStefano Zampini case MAT_IGNORE_ZERO_ENTRIES: 795290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 79677e54ba9SKris Buschelman break; 79712c028f9SKris Buschelman default: 798e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %s",MatOptions[op]); 7993a40ed3dSBarry Smith } 8003a40ed3dSBarry Smith PetscFunctionReturn(0); 8018965ea79SLois Curfman McInnes } 8028965ea79SLois Curfman McInnes 803dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIDense(Mat A,Vec ll,Vec rr) 8045b2fa520SLois Curfman McInnes { 8055b2fa520SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 806637a0070SStefano Zampini const PetscScalar *l; 807637a0070SStefano Zampini PetscScalar x,*v,*vv,*r; 808dfbe8321SBarry Smith PetscErrorCode ierr; 809637a0070SStefano Zampini PetscInt i,j,s2a,s3a,s2,s3,m=mdn->A->rmap->n,n=mdn->A->cmap->n,lda; 8105b2fa520SLois Curfman McInnes 8115b2fa520SLois Curfman McInnes PetscFunctionBegin; 812637a0070SStefano Zampini ierr = MatDenseGetArray(mdn->A,&vv);CHKERRQ(ierr); 813637a0070SStefano Zampini ierr = MatDenseGetLDA(mdn->A,&lda);CHKERRQ(ierr); 81472d926a5SLois Curfman McInnes ierr = MatGetLocalSize(A,&s2,&s3);CHKERRQ(ierr); 8155b2fa520SLois Curfman McInnes if (ll) { 81672d926a5SLois Curfman McInnes ierr = VecGetLocalSize(ll,&s2a);CHKERRQ(ierr); 817637a0070SStefano Zampini if (s2a != s2) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vector non-conforming local size, %D != %D", s2a, s2); 818bca11509SBarry Smith ierr = VecGetArrayRead(ll,&l);CHKERRQ(ierr); 8195b2fa520SLois Curfman McInnes for (i=0; i<m; i++) { 8205b2fa520SLois Curfman McInnes x = l[i]; 821637a0070SStefano Zampini v = vv + i; 822637a0070SStefano Zampini for (j=0; j<n; j++) { (*v) *= x; v+= lda;} 8235b2fa520SLois Curfman McInnes } 824bca11509SBarry Smith ierr = VecRestoreArrayRead(ll,&l);CHKERRQ(ierr); 825637a0070SStefano Zampini ierr = PetscLogFlops(1.0*n*m);CHKERRQ(ierr); 8265b2fa520SLois Curfman McInnes } 8275b2fa520SLois Curfman McInnes if (rr) { 828637a0070SStefano Zampini const PetscScalar *ar; 829637a0070SStefano Zampini 830175be7b4SMatthew Knepley ierr = VecGetLocalSize(rr,&s3a);CHKERRQ(ierr); 831e32f2f54SBarry Smith if (s3a != s3) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vec non-conforming local size, %d != %d.", s3a, s3); 832637a0070SStefano Zampini ierr = VecGetArrayRead(rr,&ar);CHKERRQ(ierr); 833637a0070SStefano Zampini ierr = VecGetArray(mdn->lvec,&r);CHKERRQ(ierr); 834637a0070SStefano Zampini ierr = PetscSFBcastBegin(mdn->Mvctx,MPIU_SCALAR,ar,r);CHKERRQ(ierr); 835637a0070SStefano Zampini ierr = PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ar,r);CHKERRQ(ierr); 836637a0070SStefano Zampini ierr = VecRestoreArrayRead(rr,&ar);CHKERRQ(ierr); 8375b2fa520SLois Curfman McInnes for (i=0; i<n; i++) { 8385b2fa520SLois Curfman McInnes x = r[i]; 839637a0070SStefano Zampini v = vv + i*lda; 8402205254eSKarl Rupp for (j=0; j<m; j++) (*v++) *= x; 8415b2fa520SLois Curfman McInnes } 842637a0070SStefano Zampini ierr = VecRestoreArray(mdn->lvec,&r);CHKERRQ(ierr); 843637a0070SStefano Zampini ierr = PetscLogFlops(1.0*n*m);CHKERRQ(ierr); 8445b2fa520SLois Curfman McInnes } 845637a0070SStefano Zampini ierr = MatDenseRestoreArray(mdn->A,&vv);CHKERRQ(ierr); 8465b2fa520SLois Curfman McInnes PetscFunctionReturn(0); 8475b2fa520SLois Curfman McInnes } 8485b2fa520SLois Curfman McInnes 849dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIDense(Mat A,NormType type,PetscReal *nrm) 850096963f5SLois Curfman McInnes { 8513501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 852dfbe8321SBarry Smith PetscErrorCode ierr; 85313f74950SBarry Smith PetscInt i,j; 854616b8fbbSStefano Zampini PetscMPIInt size; 855329f5518SBarry Smith PetscReal sum = 0.0; 856637a0070SStefano Zampini const PetscScalar *av,*v; 8573501a2bdSLois Curfman McInnes 8583a40ed3dSBarry Smith PetscFunctionBegin; 859637a0070SStefano Zampini ierr = MatDenseGetArrayRead(mdn->A,&av);CHKERRQ(ierr); 860637a0070SStefano Zampini v = av; 861616b8fbbSStefano Zampini ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr); 862616b8fbbSStefano Zampini if (size == 1) { 863064f8208SBarry Smith ierr = MatNorm(mdn->A,type,nrm);CHKERRQ(ierr); 8643501a2bdSLois Curfman McInnes } else { 8653501a2bdSLois Curfman McInnes if (type == NORM_FROBENIUS) { 866d0f46423SBarry Smith for (i=0; i<mdn->A->cmap->n*mdn->A->rmap->n; i++) { 867329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 8683501a2bdSLois Curfman McInnes } 869b2566f29SBarry Smith ierr = MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 8708f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 871dc0b31edSSatish Balay ierr = PetscLogFlops(2.0*mdn->A->cmap->n*mdn->A->rmap->n);CHKERRQ(ierr); 8723a40ed3dSBarry Smith } else if (type == NORM_1) { 873329f5518SBarry Smith PetscReal *tmp,*tmp2; 874580bdb30SBarry Smith ierr = PetscCalloc2(A->cmap->N,&tmp,A->cmap->N,&tmp2);CHKERRQ(ierr); 875064f8208SBarry Smith *nrm = 0.0; 876637a0070SStefano Zampini v = av; 877d0f46423SBarry Smith for (j=0; j<mdn->A->cmap->n; j++) { 878d0f46423SBarry Smith for (i=0; i<mdn->A->rmap->n; i++) { 87967e560aaSBarry Smith tmp[j] += PetscAbsScalar(*v); v++; 8803501a2bdSLois Curfman McInnes } 8813501a2bdSLois Curfman McInnes } 882b2566f29SBarry Smith ierr = MPIU_Allreduce(tmp,tmp2,A->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 883d0f46423SBarry Smith for (j=0; j<A->cmap->N; j++) { 884064f8208SBarry Smith if (tmp2[j] > *nrm) *nrm = tmp2[j]; 8853501a2bdSLois Curfman McInnes } 8868627564fSBarry Smith ierr = PetscFree2(tmp,tmp2);CHKERRQ(ierr); 887d0f46423SBarry Smith ierr = PetscLogFlops(A->cmap->n*A->rmap->n);CHKERRQ(ierr); 8883a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 889329f5518SBarry Smith PetscReal ntemp; 8903501a2bdSLois Curfman McInnes ierr = MatNorm(mdn->A,type,&ntemp);CHKERRQ(ierr); 891b2566f29SBarry Smith ierr = MPIU_Allreduce(&ntemp,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 892ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"No support for two norm"); 8933501a2bdSLois Curfman McInnes } 894637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(mdn->A,&av);CHKERRQ(ierr); 8953a40ed3dSBarry Smith PetscFunctionReturn(0); 8963501a2bdSLois Curfman McInnes } 8973501a2bdSLois Curfman McInnes 898fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIDense(Mat A,MatReuse reuse,Mat *matout) 8993501a2bdSLois Curfman McInnes { 9003501a2bdSLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 9013501a2bdSLois Curfman McInnes Mat B; 902d0f46423SBarry Smith PetscInt M = A->rmap->N,N = A->cmap->N,m,n,*rwork,rstart = A->rmap->rstart; 9036849ba73SBarry Smith PetscErrorCode ierr; 904637a0070SStefano Zampini PetscInt j,i,lda; 90587828ca2SBarry Smith PetscScalar *v; 9063501a2bdSLois Curfman McInnes 9073a40ed3dSBarry Smith PetscFunctionBegin; 908cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 909ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 910d0f46423SBarry Smith ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr); 9117adad957SLisandro Dalcin ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr); 9120298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(B,NULL);CHKERRQ(ierr); 913637a0070SStefano Zampini } else B = *matout; 9143501a2bdSLois Curfman McInnes 915637a0070SStefano Zampini m = a->A->rmap->n; n = a->A->cmap->n; 916637a0070SStefano Zampini ierr = MatDenseGetArrayRead(a->A,(const PetscScalar**)&v);CHKERRQ(ierr); 917637a0070SStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 918785e854fSJed Brown ierr = PetscMalloc1(m,&rwork);CHKERRQ(ierr); 9193501a2bdSLois Curfman McInnes for (i=0; i<m; i++) rwork[i] = rstart + i; 9201acff37aSSatish Balay for (j=0; j<n; j++) { 9213501a2bdSLois Curfman McInnes ierr = MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES);CHKERRQ(ierr); 922637a0070SStefano Zampini v += lda; 9233501a2bdSLois Curfman McInnes } 924637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(a->A,(const PetscScalar**)&v);CHKERRQ(ierr); 925606d414cSSatish Balay ierr = PetscFree(rwork);CHKERRQ(ierr); 9266d4a8577SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 9276d4a8577SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 928cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) { 9293501a2bdSLois Curfman McInnes *matout = B; 9303501a2bdSLois Curfman McInnes } else { 93128be2f97SBarry Smith ierr = MatHeaderMerge(A,&B);CHKERRQ(ierr); 9323501a2bdSLois Curfman McInnes } 9333a40ed3dSBarry Smith PetscFunctionReturn(0); 934096963f5SLois Curfman McInnes } 935096963f5SLois Curfman McInnes 9366849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat*); 93752c5f739Sprj- PETSC_INTERN PetscErrorCode MatScale_MPIDense(Mat,PetscScalar); 9388965ea79SLois Curfman McInnes 9394994cf47SJed Brown PetscErrorCode MatSetUp_MPIDense(Mat A) 940273d9f13SBarry Smith { 941dfbe8321SBarry Smith PetscErrorCode ierr; 942273d9f13SBarry Smith 943273d9f13SBarry Smith PetscFunctionBegin; 94418992e5dSStefano Zampini ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr); 94518992e5dSStefano Zampini ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr); 94618992e5dSStefano Zampini if (!A->preallocated) { 947273d9f13SBarry Smith ierr = MatMPIDenseSetPreallocation(A,0);CHKERRQ(ierr); 94818992e5dSStefano Zampini } 949273d9f13SBarry Smith PetscFunctionReturn(0); 950273d9f13SBarry Smith } 951273d9f13SBarry Smith 952488007eeSBarry Smith PetscErrorCode MatAXPY_MPIDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str) 953488007eeSBarry Smith { 954488007eeSBarry Smith PetscErrorCode ierr; 955488007eeSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)Y->data, *B = (Mat_MPIDense*)X->data; 956488007eeSBarry Smith 957488007eeSBarry Smith PetscFunctionBegin; 958488007eeSBarry Smith ierr = MatAXPY(A->A,alpha,B->A,str);CHKERRQ(ierr); 959488007eeSBarry Smith PetscFunctionReturn(0); 960488007eeSBarry Smith } 961488007eeSBarry Smith 9627087cfbeSBarry Smith PetscErrorCode MatConjugate_MPIDense(Mat mat) 963ba337c44SJed Brown { 964ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)mat->data; 965ba337c44SJed Brown PetscErrorCode ierr; 966ba337c44SJed Brown 967ba337c44SJed Brown PetscFunctionBegin; 968ba337c44SJed Brown ierr = MatConjugate(a->A);CHKERRQ(ierr); 969ba337c44SJed Brown PetscFunctionReturn(0); 970ba337c44SJed Brown } 971ba337c44SJed Brown 972ba337c44SJed Brown PetscErrorCode MatRealPart_MPIDense(Mat A) 973ba337c44SJed Brown { 974ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 975ba337c44SJed Brown PetscErrorCode ierr; 976ba337c44SJed Brown 977ba337c44SJed Brown PetscFunctionBegin; 978ba337c44SJed Brown ierr = MatRealPart(a->A);CHKERRQ(ierr); 979ba337c44SJed Brown PetscFunctionReturn(0); 980ba337c44SJed Brown } 981ba337c44SJed Brown 982ba337c44SJed Brown PetscErrorCode MatImaginaryPart_MPIDense(Mat A) 983ba337c44SJed Brown { 984ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 985ba337c44SJed Brown PetscErrorCode ierr; 986ba337c44SJed Brown 987ba337c44SJed Brown PetscFunctionBegin; 988ba337c44SJed Brown ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 989ba337c44SJed Brown PetscFunctionReturn(0); 990ba337c44SJed Brown } 991ba337c44SJed Brown 99249a6ff4bSBarry Smith static PetscErrorCode MatGetColumnVector_MPIDense(Mat A,Vec v,PetscInt col) 99349a6ff4bSBarry Smith { 99449a6ff4bSBarry Smith PetscErrorCode ierr; 995637a0070SStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*) A->data; 99649a6ff4bSBarry Smith 99749a6ff4bSBarry Smith PetscFunctionBegin; 998637a0070SStefano Zampini if (!a->A) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Missing local matrix"); 999637a0070SStefano Zampini if (!a->A->ops->getcolumnvector) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Missing get column operation"); 1000637a0070SStefano Zampini ierr = (*a->A->ops->getcolumnvector)(a->A,v,col);CHKERRQ(ierr); 100149a6ff4bSBarry Smith PetscFunctionReturn(0); 100249a6ff4bSBarry Smith } 100349a6ff4bSBarry Smith 100452c5f739Sprj- PETSC_INTERN PetscErrorCode MatGetColumnNorms_SeqDense(Mat,NormType,PetscReal*); 100552c5f739Sprj- 10060716a85fSBarry Smith PetscErrorCode MatGetColumnNorms_MPIDense(Mat A,NormType type,PetscReal *norms) 10070716a85fSBarry Smith { 10080716a85fSBarry Smith PetscErrorCode ierr; 10090716a85fSBarry Smith PetscInt i,n; 10100716a85fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*) A->data; 10110716a85fSBarry Smith PetscReal *work; 10120716a85fSBarry Smith 10130716a85fSBarry Smith PetscFunctionBegin; 10140298fd71SBarry Smith ierr = MatGetSize(A,NULL,&n);CHKERRQ(ierr); 1015785e854fSJed Brown ierr = PetscMalloc1(n,&work);CHKERRQ(ierr); 10160716a85fSBarry Smith ierr = MatGetColumnNorms_SeqDense(a->A,type,work);CHKERRQ(ierr); 10170716a85fSBarry Smith if (type == NORM_2) { 10180716a85fSBarry Smith for (i=0; i<n; i++) work[i] *= work[i]; 10190716a85fSBarry Smith } 10200716a85fSBarry Smith if (type == NORM_INFINITY) { 1021b2566f29SBarry Smith ierr = MPIU_Allreduce(work,norms,n,MPIU_REAL,MPIU_MAX,A->hdr.comm);CHKERRQ(ierr); 10220716a85fSBarry Smith } else { 1023b2566f29SBarry Smith ierr = MPIU_Allreduce(work,norms,n,MPIU_REAL,MPIU_SUM,A->hdr.comm);CHKERRQ(ierr); 10240716a85fSBarry Smith } 10250716a85fSBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 10260716a85fSBarry Smith if (type == NORM_2) { 10278f1a2a5eSBarry Smith for (i=0; i<n; i++) norms[i] = PetscSqrtReal(norms[i]); 10280716a85fSBarry Smith } 10290716a85fSBarry Smith PetscFunctionReturn(0); 10300716a85fSBarry Smith } 10310716a85fSBarry Smith 1032637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 10336947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVec_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10346947451fSStefano Zampini { 10356947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10366947451fSStefano Zampini PetscErrorCode ierr; 10376947451fSStefano Zampini PetscInt lda; 10386947451fSStefano Zampini 10396947451fSStefano Zampini PetscFunctionBegin; 1040616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1041616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 10426947451fSStefano Zampini if (!a->cvec) { 10436947451fSStefano Zampini ierr = VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr); 1044616b8fbbSStefano Zampini ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec);CHKERRQ(ierr); 10456947451fSStefano Zampini } 10466947451fSStefano Zampini a->vecinuse = col + 1; 10476947451fSStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 10486947451fSStefano Zampini ierr = MatDenseCUDAGetArray(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 10496947451fSStefano Zampini ierr = VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr); 10506947451fSStefano Zampini *v = a->cvec; 10516947451fSStefano Zampini PetscFunctionReturn(0); 10526947451fSStefano Zampini } 10536947451fSStefano Zampini 10546947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVec_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10556947451fSStefano Zampini { 10566947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10576947451fSStefano Zampini PetscErrorCode ierr; 10586947451fSStefano Zampini 10596947451fSStefano Zampini PetscFunctionBegin; 10605ea7661aSPierre Jolivet if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 10616947451fSStefano Zampini if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector"); 10626947451fSStefano Zampini a->vecinuse = 0; 10636947451fSStefano Zampini ierr = MatDenseCUDARestoreArray(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 10646947451fSStefano Zampini ierr = VecCUDAResetArray(a->cvec);CHKERRQ(ierr); 10656947451fSStefano Zampini *v = NULL; 10666947451fSStefano Zampini PetscFunctionReturn(0); 10676947451fSStefano Zampini } 10686947451fSStefano Zampini 10696947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecRead_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10706947451fSStefano Zampini { 10716947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10726947451fSStefano Zampini PetscInt lda; 10736947451fSStefano Zampini PetscErrorCode ierr; 10746947451fSStefano Zampini 10756947451fSStefano Zampini PetscFunctionBegin; 1076616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1077616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 10786947451fSStefano Zampini if (!a->cvec) { 10796947451fSStefano Zampini ierr = VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr); 1080616b8fbbSStefano Zampini ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec);CHKERRQ(ierr); 10816947451fSStefano Zampini } 10826947451fSStefano Zampini a->vecinuse = col + 1; 10836947451fSStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 10846947451fSStefano Zampini ierr = MatDenseCUDAGetArrayRead(a->A,&a->ptrinuse);CHKERRQ(ierr); 10856947451fSStefano Zampini ierr = VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr); 10866947451fSStefano Zampini ierr = VecLockReadPush(a->cvec);CHKERRQ(ierr); 10876947451fSStefano Zampini *v = a->cvec; 10886947451fSStefano Zampini PetscFunctionReturn(0); 10896947451fSStefano Zampini } 10906947451fSStefano Zampini 10916947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecRead_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10926947451fSStefano Zampini { 10936947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10946947451fSStefano Zampini PetscErrorCode ierr; 10956947451fSStefano Zampini 10966947451fSStefano Zampini PetscFunctionBegin; 1097616b8fbbSStefano Zampini if (!a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 1098616b8fbbSStefano Zampini if (!a->cvec) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 10996947451fSStefano Zampini a->vecinuse = 0; 11006947451fSStefano Zampini ierr = MatDenseCUDARestoreArrayRead(a->A,&a->ptrinuse);CHKERRQ(ierr); 11016947451fSStefano Zampini ierr = VecLockReadPop(a->cvec);CHKERRQ(ierr); 11026947451fSStefano Zampini ierr = VecCUDAResetArray(a->cvec);CHKERRQ(ierr); 11036947451fSStefano Zampini *v = NULL; 11046947451fSStefano Zampini PetscFunctionReturn(0); 11056947451fSStefano Zampini } 11066947451fSStefano Zampini 11076947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecWrite_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 11086947451fSStefano Zampini { 11096947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 11106947451fSStefano Zampini PetscErrorCode ierr; 11116947451fSStefano Zampini PetscInt lda; 11126947451fSStefano Zampini 11136947451fSStefano Zampini PetscFunctionBegin; 1114616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1115616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 11166947451fSStefano Zampini if (!a->cvec) { 11176947451fSStefano Zampini ierr = VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr); 1118616b8fbbSStefano Zampini ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec);CHKERRQ(ierr); 11196947451fSStefano Zampini } 11206947451fSStefano Zampini a->vecinuse = col + 1; 11216947451fSStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 11226947451fSStefano Zampini ierr = MatDenseCUDAGetArrayWrite(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 11236947451fSStefano Zampini ierr = VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr); 11246947451fSStefano Zampini *v = a->cvec; 11256947451fSStefano Zampini PetscFunctionReturn(0); 11266947451fSStefano Zampini } 11276947451fSStefano Zampini 11286947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 11296947451fSStefano Zampini { 11306947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 11316947451fSStefano Zampini PetscErrorCode ierr; 11326947451fSStefano Zampini 11336947451fSStefano Zampini PetscFunctionBegin; 1134616b8fbbSStefano Zampini if (!a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 1135616b8fbbSStefano Zampini if (!a->cvec) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 11366947451fSStefano Zampini a->vecinuse = 0; 11376947451fSStefano Zampini ierr = MatDenseCUDARestoreArrayWrite(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 11386947451fSStefano Zampini ierr = VecCUDAResetArray(a->cvec);CHKERRQ(ierr); 11396947451fSStefano Zampini *v = NULL; 11406947451fSStefano Zampini PetscFunctionReturn(0); 11416947451fSStefano Zampini } 11426947451fSStefano Zampini 1143637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAPlaceArray_MPIDenseCUDA(Mat A, const PetscScalar *a) 1144637a0070SStefano Zampini { 1145637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1146637a0070SStefano Zampini PetscErrorCode ierr; 1147637a0070SStefano Zampini 1148637a0070SStefano Zampini PetscFunctionBegin; 1149616b8fbbSStefano Zampini if (l->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1150616b8fbbSStefano Zampini if (l->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1151637a0070SStefano Zampini ierr = MatDenseCUDAPlaceArray(l->A,a);CHKERRQ(ierr); 1152637a0070SStefano Zampini PetscFunctionReturn(0); 1153637a0070SStefano Zampini } 1154637a0070SStefano Zampini 1155637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAResetArray_MPIDenseCUDA(Mat A) 1156637a0070SStefano Zampini { 1157637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1158637a0070SStefano Zampini PetscErrorCode ierr; 1159637a0070SStefano Zampini 1160637a0070SStefano Zampini PetscFunctionBegin; 1161616b8fbbSStefano Zampini if (l->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1162616b8fbbSStefano Zampini if (l->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1163637a0070SStefano Zampini ierr = MatDenseCUDAResetArray(l->A);CHKERRQ(ierr); 1164637a0070SStefano Zampini PetscFunctionReturn(0); 1165637a0070SStefano Zampini } 1166637a0070SStefano Zampini 1167d5ea218eSStefano Zampini static PetscErrorCode MatDenseCUDAReplaceArray_MPIDenseCUDA(Mat A, const PetscScalar *a) 1168d5ea218eSStefano Zampini { 1169d5ea218eSStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1170d5ea218eSStefano Zampini PetscErrorCode ierr; 1171d5ea218eSStefano Zampini 1172d5ea218eSStefano Zampini PetscFunctionBegin; 1173616b8fbbSStefano Zampini if (l->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1174616b8fbbSStefano Zampini if (l->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1175d5ea218eSStefano Zampini ierr = MatDenseCUDAReplaceArray(l->A,a);CHKERRQ(ierr); 1176d5ea218eSStefano Zampini PetscFunctionReturn(0); 1177d5ea218eSStefano Zampini } 1178d5ea218eSStefano Zampini 1179637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArrayWrite_MPIDenseCUDA(Mat A, PetscScalar **a) 1180637a0070SStefano Zampini { 1181637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1182637a0070SStefano Zampini PetscErrorCode ierr; 1183637a0070SStefano Zampini 1184637a0070SStefano Zampini PetscFunctionBegin; 1185637a0070SStefano Zampini ierr = MatDenseCUDAGetArrayWrite(l->A,a);CHKERRQ(ierr); 1186637a0070SStefano Zampini PetscFunctionReturn(0); 1187637a0070SStefano Zampini } 1188637a0070SStefano Zampini 1189637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArrayWrite_MPIDenseCUDA(Mat A, PetscScalar **a) 1190637a0070SStefano Zampini { 1191637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1192637a0070SStefano Zampini PetscErrorCode ierr; 1193637a0070SStefano Zampini 1194637a0070SStefano Zampini PetscFunctionBegin; 1195637a0070SStefano Zampini ierr = MatDenseCUDARestoreArrayWrite(l->A,a);CHKERRQ(ierr); 1196637a0070SStefano Zampini PetscFunctionReturn(0); 1197637a0070SStefano Zampini } 1198637a0070SStefano Zampini 1199637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArrayRead_MPIDenseCUDA(Mat A, const PetscScalar **a) 1200637a0070SStefano Zampini { 1201637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1202637a0070SStefano Zampini PetscErrorCode ierr; 1203637a0070SStefano Zampini 1204637a0070SStefano Zampini PetscFunctionBegin; 1205637a0070SStefano Zampini ierr = MatDenseCUDAGetArrayRead(l->A,a);CHKERRQ(ierr); 1206637a0070SStefano Zampini PetscFunctionReturn(0); 1207637a0070SStefano Zampini } 1208637a0070SStefano Zampini 1209637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArrayRead_MPIDenseCUDA(Mat A, const PetscScalar **a) 1210637a0070SStefano Zampini { 1211637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1212637a0070SStefano Zampini PetscErrorCode ierr; 1213637a0070SStefano Zampini 1214637a0070SStefano Zampini PetscFunctionBegin; 1215637a0070SStefano Zampini ierr = MatDenseCUDARestoreArrayRead(l->A,a);CHKERRQ(ierr); 1216637a0070SStefano Zampini PetscFunctionReturn(0); 1217637a0070SStefano Zampini } 1218637a0070SStefano Zampini 1219637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArray_MPIDenseCUDA(Mat A, PetscScalar **a) 1220637a0070SStefano Zampini { 1221637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1222637a0070SStefano Zampini PetscErrorCode ierr; 1223637a0070SStefano Zampini 1224637a0070SStefano Zampini PetscFunctionBegin; 1225637a0070SStefano Zampini ierr = MatDenseCUDAGetArray(l->A,a);CHKERRQ(ierr); 1226637a0070SStefano Zampini PetscFunctionReturn(0); 1227637a0070SStefano Zampini } 1228637a0070SStefano Zampini 1229637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArray_MPIDenseCUDA(Mat A, PetscScalar **a) 1230637a0070SStefano Zampini { 1231637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1232637a0070SStefano Zampini PetscErrorCode ierr; 1233637a0070SStefano Zampini 1234637a0070SStefano Zampini PetscFunctionBegin; 1235637a0070SStefano Zampini ierr = MatDenseCUDARestoreArray(l->A,a);CHKERRQ(ierr); 1236637a0070SStefano Zampini PetscFunctionReturn(0); 1237637a0070SStefano Zampini } 1238637a0070SStefano Zampini 12396947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecWrite_MPIDense(Mat,PetscInt,Vec*); 12406947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecRead_MPIDense(Mat,PetscInt,Vec*); 12416947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVec_MPIDense(Mat,PetscInt,Vec*); 12426947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDense(Mat,PetscInt,Vec*); 12436947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecRead_MPIDense(Mat,PetscInt,Vec*); 12446947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVec_MPIDense(Mat,PetscInt,Vec*); 12455ea7661aSPierre Jolivet static PetscErrorCode MatDenseRestoreSubMatrix_MPIDense(Mat,Mat*); 12466947451fSStefano Zampini 1247637a0070SStefano Zampini static PetscErrorCode MatBindToCPU_MPIDenseCUDA(Mat mat,PetscBool bind) 1248637a0070SStefano Zampini { 1249637a0070SStefano Zampini Mat_MPIDense *d = (Mat_MPIDense*)mat->data; 1250637a0070SStefano Zampini PetscErrorCode ierr; 1251637a0070SStefano Zampini 1252637a0070SStefano Zampini PetscFunctionBegin; 1253616b8fbbSStefano Zampini if (d->vecinuse) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1254616b8fbbSStefano Zampini if (d->matinuse) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1255637a0070SStefano Zampini if (d->A) { 1256637a0070SStefano Zampini ierr = MatBindToCPU(d->A,bind);CHKERRQ(ierr); 1257637a0070SStefano Zampini } 1258637a0070SStefano Zampini mat->boundtocpu = bind; 12596947451fSStefano Zampini if (!bind) { 12606947451fSStefano Zampini PetscBool iscuda; 12616947451fSStefano Zampini 12626947451fSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)d->cvec,VECMPICUDA,&iscuda);CHKERRQ(ierr); 12636947451fSStefano Zampini if (!iscuda) { 12646947451fSStefano Zampini ierr = VecDestroy(&d->cvec);CHKERRQ(ierr); 1265616b8fbbSStefano Zampini } 1266616b8fbbSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)d->cmat,MATMPIDENSECUDA,&iscuda);CHKERRQ(ierr); 1267616b8fbbSStefano Zampini if (!iscuda) { 12685ea7661aSPierre Jolivet ierr = MatDestroy(&d->cmat);CHKERRQ(ierr); 12696947451fSStefano Zampini } 12706947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDenseCUDA);CHKERRQ(ierr); 12716947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDenseCUDA);CHKERRQ(ierr); 12726947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDenseCUDA);CHKERRQ(ierr); 12736947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDenseCUDA);CHKERRQ(ierr); 12746947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDenseCUDA);CHKERRQ(ierr); 12756947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDenseCUDA);CHKERRQ(ierr); 12766947451fSStefano Zampini } else { 12776947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDense);CHKERRQ(ierr); 12786947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDense);CHKERRQ(ierr); 12796947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDense);CHKERRQ(ierr); 12806947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDense);CHKERRQ(ierr); 12816947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDense);CHKERRQ(ierr); 12826947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDense);CHKERRQ(ierr); 1283616b8fbbSStefano Zampini } 1284616b8fbbSStefano Zampini if (d->cmat) { 1285616b8fbbSStefano Zampini ierr = MatBindToCPU(d->cmat,bind);CHKERRQ(ierr); 12866947451fSStefano Zampini } 1287637a0070SStefano Zampini PetscFunctionReturn(0); 1288637a0070SStefano Zampini } 1289637a0070SStefano Zampini 1290637a0070SStefano Zampini PetscErrorCode MatMPIDenseCUDASetPreallocation(Mat A, PetscScalar *d_data) 1291637a0070SStefano Zampini { 1292637a0070SStefano Zampini Mat_MPIDense *d = (Mat_MPIDense*)A->data; 1293637a0070SStefano Zampini PetscErrorCode ierr; 1294637a0070SStefano Zampini PetscBool iscuda; 1295637a0070SStefano Zampini 1296637a0070SStefano Zampini PetscFunctionBegin; 1297d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 1298637a0070SStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIDENSECUDA,&iscuda);CHKERRQ(ierr); 1299637a0070SStefano Zampini if (!iscuda) PetscFunctionReturn(0); 1300637a0070SStefano Zampini ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr); 1301637a0070SStefano Zampini ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr); 1302637a0070SStefano Zampini if (!d->A) { 1303637a0070SStefano Zampini ierr = MatCreate(PETSC_COMM_SELF,&d->A);CHKERRQ(ierr); 1304637a0070SStefano Zampini ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)d->A);CHKERRQ(ierr); 1305637a0070SStefano Zampini ierr = MatSetSizes(d->A,A->rmap->n,A->cmap->N,A->rmap->n,A->cmap->N);CHKERRQ(ierr); 1306637a0070SStefano Zampini } 1307637a0070SStefano Zampini ierr = MatSetType(d->A,MATSEQDENSECUDA);CHKERRQ(ierr); 1308637a0070SStefano Zampini ierr = MatSeqDenseCUDASetPreallocation(d->A,d_data);CHKERRQ(ierr); 1309637a0070SStefano Zampini A->preallocated = PETSC_TRUE; 1310637a0070SStefano Zampini PetscFunctionReturn(0); 1311637a0070SStefano Zampini } 1312637a0070SStefano Zampini #endif 1313637a0070SStefano Zampini 131473a71a0fSBarry Smith static PetscErrorCode MatSetRandom_MPIDense(Mat x,PetscRandom rctx) 131573a71a0fSBarry Smith { 131673a71a0fSBarry Smith Mat_MPIDense *d = (Mat_MPIDense*)x->data; 131773a71a0fSBarry Smith PetscErrorCode ierr; 131873a71a0fSBarry Smith 131973a71a0fSBarry Smith PetscFunctionBegin; 1320637a0070SStefano Zampini ierr = MatSetRandom(d->A,rctx);CHKERRQ(ierr); 132173a71a0fSBarry Smith PetscFunctionReturn(0); 132273a71a0fSBarry Smith } 132373a71a0fSBarry Smith 13243b49f96aSBarry Smith static PetscErrorCode MatMissingDiagonal_MPIDense(Mat A,PetscBool *missing,PetscInt *d) 13253b49f96aSBarry Smith { 13263b49f96aSBarry Smith PetscFunctionBegin; 13273b49f96aSBarry Smith *missing = PETSC_FALSE; 13283b49f96aSBarry Smith PetscFunctionReturn(0); 13293b49f96aSBarry Smith } 13303b49f96aSBarry Smith 13314222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat,Mat,PetscReal,Mat); 1332cc48ffa7SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat,Mat,Mat); 13336718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat,Mat,Mat); 13346718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat,Mat,PetscReal,Mat); 13356718818eSStefano Zampini static PetscErrorCode MatEqual_MPIDense(Mat,Mat,PetscBool*); 13366718818eSStefano Zampini static PetscErrorCode MatLoad_MPIDense(Mat,PetscViewer); 1337cc48ffa7SToby Isaac 13388965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/ 133909dc0095SBarry Smith static struct _MatOps MatOps_Values = { MatSetValues_MPIDense, 134009dc0095SBarry Smith MatGetRow_MPIDense, 134109dc0095SBarry Smith MatRestoreRow_MPIDense, 134209dc0095SBarry Smith MatMult_MPIDense, 134397304618SKris Buschelman /* 4*/ MatMultAdd_MPIDense, 13447c922b88SBarry Smith MatMultTranspose_MPIDense, 13457c922b88SBarry Smith MatMultTransposeAdd_MPIDense, 13468965ea79SLois Curfman McInnes 0, 134709dc0095SBarry Smith 0, 134809dc0095SBarry Smith 0, 134997304618SKris Buschelman /* 10*/ 0, 135009dc0095SBarry Smith 0, 135109dc0095SBarry Smith 0, 135209dc0095SBarry Smith 0, 135309dc0095SBarry Smith MatTranspose_MPIDense, 135497304618SKris Buschelman /* 15*/ MatGetInfo_MPIDense, 13556e4ee0c6SHong Zhang MatEqual_MPIDense, 135609dc0095SBarry Smith MatGetDiagonal_MPIDense, 13575b2fa520SLois Curfman McInnes MatDiagonalScale_MPIDense, 135809dc0095SBarry Smith MatNorm_MPIDense, 135997304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPIDense, 136009dc0095SBarry Smith MatAssemblyEnd_MPIDense, 136109dc0095SBarry Smith MatSetOption_MPIDense, 136209dc0095SBarry Smith MatZeroEntries_MPIDense, 1363d519adbfSMatthew Knepley /* 24*/ MatZeroRows_MPIDense, 1364919b68f7SBarry Smith 0, 136501b82886SBarry Smith 0, 136601b82886SBarry Smith 0, 136701b82886SBarry Smith 0, 13684994cf47SJed Brown /* 29*/ MatSetUp_MPIDense, 1369273d9f13SBarry Smith 0, 137009dc0095SBarry Smith 0, 1371c56a70eeSBarry Smith MatGetDiagonalBlock_MPIDense, 13728c778c55SBarry Smith 0, 1373d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPIDense, 137409dc0095SBarry Smith 0, 137509dc0095SBarry Smith 0, 137609dc0095SBarry Smith 0, 137709dc0095SBarry Smith 0, 1378d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPIDense, 13797dae84e0SHong Zhang MatCreateSubMatrices_MPIDense, 138009dc0095SBarry Smith 0, 138109dc0095SBarry Smith MatGetValues_MPIDense, 138209dc0095SBarry Smith 0, 1383d519adbfSMatthew Knepley /* 44*/ 0, 138409dc0095SBarry Smith MatScale_MPIDense, 13857d68702bSBarry Smith MatShift_Basic, 138609dc0095SBarry Smith 0, 138709dc0095SBarry Smith 0, 138873a71a0fSBarry Smith /* 49*/ MatSetRandom_MPIDense, 138909dc0095SBarry Smith 0, 139009dc0095SBarry Smith 0, 139109dc0095SBarry Smith 0, 139209dc0095SBarry Smith 0, 1393d519adbfSMatthew Knepley /* 54*/ 0, 139409dc0095SBarry Smith 0, 139509dc0095SBarry Smith 0, 139609dc0095SBarry Smith 0, 139709dc0095SBarry Smith 0, 13987dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPIDense, 1399b9b97703SBarry Smith MatDestroy_MPIDense, 1400b9b97703SBarry Smith MatView_MPIDense, 1401357abbc8SBarry Smith 0, 140297304618SKris Buschelman 0, 1403d519adbfSMatthew Knepley /* 64*/ 0, 140497304618SKris Buschelman 0, 140597304618SKris Buschelman 0, 140697304618SKris Buschelman 0, 140797304618SKris Buschelman 0, 1408d519adbfSMatthew Knepley /* 69*/ 0, 140997304618SKris Buschelman 0, 141097304618SKris Buschelman 0, 141197304618SKris Buschelman 0, 141297304618SKris Buschelman 0, 1413d519adbfSMatthew Knepley /* 74*/ 0, 141497304618SKris Buschelman 0, 141597304618SKris Buschelman 0, 141697304618SKris Buschelman 0, 141797304618SKris Buschelman 0, 1418d519adbfSMatthew Knepley /* 79*/ 0, 141997304618SKris Buschelman 0, 142097304618SKris Buschelman 0, 142197304618SKris Buschelman 0, 14225bba2384SShri Abhyankar /* 83*/ MatLoad_MPIDense, 1423865e5f61SKris Buschelman 0, 1424865e5f61SKris Buschelman 0, 1425865e5f61SKris Buschelman 0, 1426865e5f61SKris Buschelman 0, 1427865e5f61SKris Buschelman 0, 14284222ddf1SHong Zhang /* 89*/ 0, 14294222ddf1SHong Zhang 0, 14306718818eSStefano Zampini 0, 14312fbe02b9SBarry Smith 0, 1432ba337c44SJed Brown 0, 1433d519adbfSMatthew Knepley /* 94*/ 0, 14344222ddf1SHong Zhang 0, 14356718818eSStefano Zampini MatMatTransposeMultSymbolic_MPIDense_MPIDense, 1436cc48ffa7SToby Isaac MatMatTransposeMultNumeric_MPIDense_MPIDense, 1437ba337c44SJed Brown 0, 14384222ddf1SHong Zhang /* 99*/ MatProductSetFromOptions_MPIDense, 1439ba337c44SJed Brown 0, 1440ba337c44SJed Brown 0, 1441ba337c44SJed Brown MatConjugate_MPIDense, 1442ba337c44SJed Brown 0, 1443ba337c44SJed Brown /*104*/ 0, 1444ba337c44SJed Brown MatRealPart_MPIDense, 1445ba337c44SJed Brown MatImaginaryPart_MPIDense, 144686d161a7SShri Abhyankar 0, 144786d161a7SShri Abhyankar 0, 144886d161a7SShri Abhyankar /*109*/ 0, 144986d161a7SShri Abhyankar 0, 145086d161a7SShri Abhyankar 0, 145149a6ff4bSBarry Smith MatGetColumnVector_MPIDense, 14523b49f96aSBarry Smith MatMissingDiagonal_MPIDense, 145386d161a7SShri Abhyankar /*114*/ 0, 145486d161a7SShri Abhyankar 0, 145586d161a7SShri Abhyankar 0, 145686d161a7SShri Abhyankar 0, 145786d161a7SShri Abhyankar 0, 145886d161a7SShri Abhyankar /*119*/ 0, 145986d161a7SShri Abhyankar 0, 146086d161a7SShri Abhyankar 0, 14610716a85fSBarry Smith 0, 14620716a85fSBarry Smith 0, 14630716a85fSBarry Smith /*124*/ 0, 14643964eb88SJed Brown MatGetColumnNorms_MPIDense, 14653964eb88SJed Brown 0, 14663964eb88SJed Brown 0, 14673964eb88SJed Brown 0, 14683964eb88SJed Brown /*129*/ 0, 14694222ddf1SHong Zhang 0, 14706718818eSStefano Zampini MatTransposeMatMultSymbolic_MPIDense_MPIDense, 1471cb20be35SHong Zhang MatTransposeMatMultNumeric_MPIDense_MPIDense, 14723964eb88SJed Brown 0, 14733964eb88SJed Brown /*134*/ 0, 14743964eb88SJed Brown 0, 14753964eb88SJed Brown 0, 14763964eb88SJed Brown 0, 14773964eb88SJed Brown 0, 14783964eb88SJed Brown /*139*/ 0, 1479f9426fe0SMark Adams 0, 148094e2cb23SJakub Kruzik 0, 148194e2cb23SJakub Kruzik 0, 148294e2cb23SJakub Kruzik 0, 14834222ddf1SHong Zhang MatCreateMPIMatConcatenateSeqMat_MPIDense, 14844222ddf1SHong Zhang /*145*/ 0, 14854222ddf1SHong Zhang 0, 14864222ddf1SHong Zhang 0 1487ba337c44SJed Brown }; 14888965ea79SLois Curfman McInnes 14897087cfbeSBarry Smith PetscErrorCode MatMPIDenseSetPreallocation_MPIDense(Mat mat,PetscScalar *data) 1490a23d5eceSKris Buschelman { 1491637a0070SStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)mat->data; 1492637a0070SStefano Zampini PetscBool iscuda; 1493dfbe8321SBarry Smith PetscErrorCode ierr; 1494a23d5eceSKris Buschelman 1495a23d5eceSKris Buschelman PetscFunctionBegin; 1496616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 149734ef9618SShri Abhyankar ierr = PetscLayoutSetUp(mat->rmap);CHKERRQ(ierr); 149834ef9618SShri Abhyankar ierr = PetscLayoutSetUp(mat->cmap);CHKERRQ(ierr); 1499637a0070SStefano Zampini if (!a->A) { 1500f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&a->A);CHKERRQ(ierr); 15013bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 1502637a0070SStefano Zampini ierr = MatSetSizes(a->A,mat->rmap->n,mat->cmap->N,mat->rmap->n,mat->cmap->N);CHKERRQ(ierr); 1503637a0070SStefano Zampini } 1504637a0070SStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)mat,MATMPIDENSECUDA,&iscuda);CHKERRQ(ierr); 1505637a0070SStefano Zampini ierr = MatSetType(a->A,iscuda ? MATSEQDENSECUDA : MATSEQDENSE);CHKERRQ(ierr); 1506637a0070SStefano Zampini ierr = MatSeqDenseSetPreallocation(a->A,data);CHKERRQ(ierr); 1507637a0070SStefano Zampini mat->preallocated = PETSC_TRUE; 1508a23d5eceSKris Buschelman PetscFunctionReturn(0); 1509a23d5eceSKris Buschelman } 1510a23d5eceSKris Buschelman 151165b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 1512cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIDense_Elemental(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 15138baccfbdSHong Zhang { 15148ea901baSHong Zhang Mat mat_elemental; 15158ea901baSHong Zhang PetscErrorCode ierr; 151632d7a744SHong Zhang PetscScalar *v; 151732d7a744SHong Zhang PetscInt m=A->rmap->n,N=A->cmap->N,rstart=A->rmap->rstart,i,*rows,*cols; 15188ea901baSHong Zhang 15198baccfbdSHong Zhang PetscFunctionBegin; 1520378336b6SHong Zhang if (reuse == MAT_REUSE_MATRIX) { 1521378336b6SHong Zhang mat_elemental = *newmat; 1522378336b6SHong Zhang ierr = MatZeroEntries(*newmat);CHKERRQ(ierr); 1523378336b6SHong Zhang } else { 1524378336b6SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental);CHKERRQ(ierr); 1525378336b6SHong Zhang ierr = MatSetSizes(mat_elemental,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 1526378336b6SHong Zhang ierr = MatSetType(mat_elemental,MATELEMENTAL);CHKERRQ(ierr); 1527378336b6SHong Zhang ierr = MatSetUp(mat_elemental);CHKERRQ(ierr); 152832d7a744SHong Zhang ierr = MatSetOption(mat_elemental,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 1529378336b6SHong Zhang } 1530378336b6SHong Zhang 153132d7a744SHong Zhang ierr = PetscMalloc2(m,&rows,N,&cols);CHKERRQ(ierr); 153232d7a744SHong Zhang for (i=0; i<N; i++) cols[i] = i; 153332d7a744SHong Zhang for (i=0; i<m; i++) rows[i] = rstart + i; 15348ea901baSHong Zhang 1535637a0070SStefano Zampini /* PETSc-Elemental interface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */ 153632d7a744SHong Zhang ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr); 153732d7a744SHong Zhang ierr = MatSetValues(mat_elemental,m,rows,N,cols,v,ADD_VALUES);CHKERRQ(ierr); 15388ea901baSHong Zhang ierr = MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 15398ea901baSHong Zhang ierr = MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 154032d7a744SHong Zhang ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr); 154132d7a744SHong Zhang ierr = PetscFree2(rows,cols);CHKERRQ(ierr); 15428ea901baSHong Zhang 1543511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 154428be2f97SBarry Smith ierr = MatHeaderReplace(A,&mat_elemental);CHKERRQ(ierr); 15458ea901baSHong Zhang } else { 15468ea901baSHong Zhang *newmat = mat_elemental; 15478ea901baSHong Zhang } 15488baccfbdSHong Zhang PetscFunctionReturn(0); 15498baccfbdSHong Zhang } 155065b80a83SHong Zhang #endif 15518baccfbdSHong Zhang 1552af53bab2SHong Zhang static PetscErrorCode MatDenseGetColumn_MPIDense(Mat A,PetscInt col,PetscScalar **vals) 155386aefd0dSHong Zhang { 155486aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 155586aefd0dSHong Zhang PetscErrorCode ierr; 155686aefd0dSHong Zhang 155786aefd0dSHong Zhang PetscFunctionBegin; 155886aefd0dSHong Zhang ierr = MatDenseGetColumn(mat->A,col,vals);CHKERRQ(ierr); 155986aefd0dSHong Zhang PetscFunctionReturn(0); 156086aefd0dSHong Zhang } 156186aefd0dSHong Zhang 1562af53bab2SHong Zhang static PetscErrorCode MatDenseRestoreColumn_MPIDense(Mat A,PetscScalar **vals) 156386aefd0dSHong Zhang { 156486aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 156586aefd0dSHong Zhang PetscErrorCode ierr; 156686aefd0dSHong Zhang 156786aefd0dSHong Zhang PetscFunctionBegin; 156886aefd0dSHong Zhang ierr = MatDenseRestoreColumn(mat->A,vals);CHKERRQ(ierr); 156986aefd0dSHong Zhang PetscFunctionReturn(0); 157086aefd0dSHong Zhang } 157186aefd0dSHong Zhang 157294e2cb23SJakub Kruzik PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIDense(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 157394e2cb23SJakub Kruzik { 157494e2cb23SJakub Kruzik PetscErrorCode ierr; 157594e2cb23SJakub Kruzik Mat_MPIDense *mat; 157694e2cb23SJakub Kruzik PetscInt m,nloc,N; 157794e2cb23SJakub Kruzik 157894e2cb23SJakub Kruzik PetscFunctionBegin; 157994e2cb23SJakub Kruzik ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr); 158094e2cb23SJakub Kruzik ierr = MatGetLocalSize(inmat,NULL,&nloc);CHKERRQ(ierr); 158194e2cb23SJakub Kruzik if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 158294e2cb23SJakub Kruzik PetscInt sum; 158394e2cb23SJakub Kruzik 158494e2cb23SJakub Kruzik if (n == PETSC_DECIDE) { 158594e2cb23SJakub Kruzik ierr = PetscSplitOwnership(comm,&n,&N);CHKERRQ(ierr); 158694e2cb23SJakub Kruzik } 158794e2cb23SJakub Kruzik /* Check sum(n) = N */ 158894e2cb23SJakub Kruzik ierr = MPIU_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 158994e2cb23SJakub Kruzik if (sum != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns %D != global columns %D",sum,N); 159094e2cb23SJakub Kruzik 159194e2cb23SJakub Kruzik ierr = MatCreateDense(comm,m,n,PETSC_DETERMINE,N,NULL,outmat);CHKERRQ(ierr); 159294e2cb23SJakub Kruzik } 159394e2cb23SJakub Kruzik 159494e2cb23SJakub Kruzik /* numeric phase */ 159594e2cb23SJakub Kruzik mat = (Mat_MPIDense*)(*outmat)->data; 159694e2cb23SJakub Kruzik ierr = MatCopy(inmat,mat->A,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 159794e2cb23SJakub Kruzik ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 159894e2cb23SJakub Kruzik ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 159994e2cb23SJakub Kruzik PetscFunctionReturn(0); 160094e2cb23SJakub Kruzik } 160194e2cb23SJakub Kruzik 1602637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1603637a0070SStefano Zampini PetscErrorCode MatConvert_MPIDenseCUDA_MPIDense(Mat M,MatType type,MatReuse reuse,Mat *newmat) 1604637a0070SStefano Zampini { 1605637a0070SStefano Zampini Mat B; 1606637a0070SStefano Zampini Mat_MPIDense *m; 1607637a0070SStefano Zampini PetscErrorCode ierr; 1608637a0070SStefano Zampini 1609637a0070SStefano Zampini PetscFunctionBegin; 1610637a0070SStefano Zampini if (reuse == MAT_INITIAL_MATRIX) { 1611637a0070SStefano Zampini ierr = MatDuplicate(M,MAT_COPY_VALUES,newmat);CHKERRQ(ierr); 1612637a0070SStefano Zampini } else if (reuse == MAT_REUSE_MATRIX) { 1613637a0070SStefano Zampini ierr = MatCopy(M,*newmat,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 1614637a0070SStefano Zampini } 1615637a0070SStefano Zampini 1616637a0070SStefano Zampini B = *newmat; 1617637a0070SStefano Zampini ierr = MatBindToCPU_MPIDenseCUDA(B,PETSC_TRUE);CHKERRQ(ierr); 1618637a0070SStefano Zampini ierr = PetscFree(B->defaultvectype);CHKERRQ(ierr); 1619637a0070SStefano Zampini ierr = PetscStrallocpy(VECSTANDARD,&B->defaultvectype);CHKERRQ(ierr); 1620637a0070SStefano Zampini ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIDENSE);CHKERRQ(ierr); 1621637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpidensecuda_mpidense_C",NULL);CHKERRQ(ierr); 1622637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaij_mpidensecuda_C",NULL);CHKERRQ(ierr); 16236718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaijcusparse_mpidensecuda_C",NULL);CHKERRQ(ierr); 1624637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaij_C",NULL);CHKERRQ(ierr); 16256718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaijcusparse_C",NULL);CHKERRQ(ierr); 1626637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArray_C",NULL);CHKERRQ(ierr); 1627637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayRead_C",NULL);CHKERRQ(ierr); 1628637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayWrite_C",NULL);CHKERRQ(ierr); 1629637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArray_C",NULL);CHKERRQ(ierr); 1630637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayRead_C",NULL);CHKERRQ(ierr); 1631637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayWrite_C",NULL);CHKERRQ(ierr); 1632637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAPlaceArray_C",NULL);CHKERRQ(ierr); 1633637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAResetArray_C",NULL);CHKERRQ(ierr); 1634d5ea218eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAReplaceArray_C",NULL);CHKERRQ(ierr); 1635637a0070SStefano Zampini m = (Mat_MPIDense*)(B)->data; 1636637a0070SStefano Zampini if (m->A) { 1637637a0070SStefano Zampini ierr = MatConvert(m->A,MATSEQDENSE,MAT_INPLACE_MATRIX,&m->A);CHKERRQ(ierr); 1638637a0070SStefano Zampini ierr = MatSetUpMultiply_MPIDense(B);CHKERRQ(ierr); 1639637a0070SStefano Zampini } 1640637a0070SStefano Zampini B->ops->bindtocpu = NULL; 1641637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_CPU; 1642637a0070SStefano Zampini PetscFunctionReturn(0); 1643637a0070SStefano Zampini } 1644637a0070SStefano Zampini 1645637a0070SStefano Zampini PetscErrorCode MatConvert_MPIDense_MPIDenseCUDA(Mat M,MatType type,MatReuse reuse,Mat *newmat) 1646637a0070SStefano Zampini { 1647637a0070SStefano Zampini Mat B; 1648637a0070SStefano Zampini Mat_MPIDense *m; 1649637a0070SStefano Zampini PetscErrorCode ierr; 1650637a0070SStefano Zampini 1651637a0070SStefano Zampini PetscFunctionBegin; 1652637a0070SStefano Zampini if (reuse == MAT_INITIAL_MATRIX) { 1653637a0070SStefano Zampini ierr = MatDuplicate(M,MAT_COPY_VALUES,newmat);CHKERRQ(ierr); 1654637a0070SStefano Zampini } else if (reuse == MAT_REUSE_MATRIX) { 1655637a0070SStefano Zampini ierr = MatCopy(M,*newmat,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 1656637a0070SStefano Zampini } 1657637a0070SStefano Zampini 1658637a0070SStefano Zampini B = *newmat; 1659637a0070SStefano Zampini ierr = PetscFree(B->defaultvectype);CHKERRQ(ierr); 1660637a0070SStefano Zampini ierr = PetscStrallocpy(VECCUDA,&B->defaultvectype);CHKERRQ(ierr); 1661637a0070SStefano Zampini ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIDENSECUDA);CHKERRQ(ierr); 1662637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpidensecuda_mpidense_C", MatConvert_MPIDenseCUDA_MPIDense);CHKERRQ(ierr); 1663637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaij_mpidensecuda_C", MatProductSetFromOptions_MPIAIJ_MPIDense);CHKERRQ(ierr); 16646718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaijcusparse_mpidensecuda_C",MatProductSetFromOptions_MPIAIJ_MPIDense);CHKERRQ(ierr); 1665637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaij_C", MatProductSetFromOptions_MPIDense_MPIAIJ);CHKERRQ(ierr); 16666718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaijcusparse_C",MatProductSetFromOptions_MPIDense_MPIAIJ);CHKERRQ(ierr); 1667637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArray_C", MatDenseCUDAGetArray_MPIDenseCUDA);CHKERRQ(ierr); 1668637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayRead_C", MatDenseCUDAGetArrayRead_MPIDenseCUDA);CHKERRQ(ierr); 1669637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayWrite_C", MatDenseCUDAGetArrayWrite_MPIDenseCUDA);CHKERRQ(ierr); 1670637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArray_C", MatDenseCUDARestoreArray_MPIDenseCUDA);CHKERRQ(ierr); 1671637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayRead_C", MatDenseCUDARestoreArrayRead_MPIDenseCUDA);CHKERRQ(ierr); 1672637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayWrite_C", MatDenseCUDARestoreArrayWrite_MPIDenseCUDA);CHKERRQ(ierr); 1673637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAPlaceArray_C", MatDenseCUDAPlaceArray_MPIDenseCUDA);CHKERRQ(ierr); 1674637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAResetArray_C", MatDenseCUDAResetArray_MPIDenseCUDA);CHKERRQ(ierr); 1675d5ea218eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAReplaceArray_C", MatDenseCUDAReplaceArray_MPIDenseCUDA);CHKERRQ(ierr); 1676637a0070SStefano Zampini m = (Mat_MPIDense*)(B)->data; 1677637a0070SStefano Zampini if (m->A) { 1678637a0070SStefano Zampini ierr = MatConvert(m->A,MATSEQDENSECUDA,MAT_INPLACE_MATRIX,&m->A);CHKERRQ(ierr); 1679637a0070SStefano Zampini ierr = MatSetUpMultiply_MPIDense(B);CHKERRQ(ierr); 1680637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_BOTH; 1681637a0070SStefano Zampini } else { 1682637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_UNALLOCATED; 1683637a0070SStefano Zampini } 1684637a0070SStefano Zampini ierr = MatBindToCPU_MPIDenseCUDA(B,PETSC_FALSE);CHKERRQ(ierr); 1685637a0070SStefano Zampini 1686637a0070SStefano Zampini B->ops->bindtocpu = MatBindToCPU_MPIDenseCUDA; 1687637a0070SStefano Zampini PetscFunctionReturn(0); 1688637a0070SStefano Zampini } 1689637a0070SStefano Zampini #endif 1690637a0070SStefano Zampini 16916947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVec_MPIDense(Mat A,PetscInt col,Vec *v) 16926947451fSStefano Zampini { 16936947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 16946947451fSStefano Zampini PetscErrorCode ierr; 16956947451fSStefano Zampini PetscInt lda; 16966947451fSStefano Zampini 16976947451fSStefano Zampini PetscFunctionBegin; 1698616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1699616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 17006947451fSStefano Zampini if (!a->cvec) { 17016947451fSStefano Zampini ierr = VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr); 17026947451fSStefano Zampini } 17036947451fSStefano Zampini a->vecinuse = col + 1; 17046947451fSStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 17056947451fSStefano Zampini ierr = MatDenseGetArray(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 17066947451fSStefano Zampini ierr = VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr); 17076947451fSStefano Zampini *v = a->cvec; 17086947451fSStefano Zampini PetscFunctionReturn(0); 17096947451fSStefano Zampini } 17106947451fSStefano Zampini 17116947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVec_MPIDense(Mat A,PetscInt col,Vec *v) 17126947451fSStefano Zampini { 17136947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17146947451fSStefano Zampini PetscErrorCode ierr; 17156947451fSStefano Zampini 17166947451fSStefano Zampini PetscFunctionBegin; 17175ea7661aSPierre Jolivet if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 17186947451fSStefano Zampini if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector"); 17196947451fSStefano Zampini a->vecinuse = 0; 17206947451fSStefano Zampini ierr = MatDenseRestoreArray(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 17216947451fSStefano Zampini ierr = VecResetArray(a->cvec);CHKERRQ(ierr); 17226947451fSStefano Zampini *v = NULL; 17236947451fSStefano Zampini PetscFunctionReturn(0); 17246947451fSStefano Zampini } 17256947451fSStefano Zampini 17266947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecRead_MPIDense(Mat A,PetscInt col,Vec *v) 17276947451fSStefano Zampini { 17286947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17296947451fSStefano Zampini PetscErrorCode ierr; 17306947451fSStefano Zampini PetscInt lda; 17316947451fSStefano Zampini 17326947451fSStefano Zampini PetscFunctionBegin; 1733616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1734616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 17356947451fSStefano Zampini if (!a->cvec) { 17366947451fSStefano Zampini ierr = VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr); 17376947451fSStefano Zampini } 17386947451fSStefano Zampini a->vecinuse = col + 1; 17396947451fSStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 17406947451fSStefano Zampini ierr = MatDenseGetArrayRead(a->A,&a->ptrinuse);CHKERRQ(ierr); 17416947451fSStefano Zampini ierr = VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr); 17426947451fSStefano Zampini ierr = VecLockReadPush(a->cvec);CHKERRQ(ierr); 17436947451fSStefano Zampini *v = a->cvec; 17446947451fSStefano Zampini PetscFunctionReturn(0); 17456947451fSStefano Zampini } 17466947451fSStefano Zampini 17476947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecRead_MPIDense(Mat A,PetscInt col,Vec *v) 17486947451fSStefano Zampini { 17496947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17506947451fSStefano Zampini PetscErrorCode ierr; 17516947451fSStefano Zampini 17526947451fSStefano Zampini PetscFunctionBegin; 1753616b8fbbSStefano Zampini if (!a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 1754616b8fbbSStefano Zampini if (!a->cvec) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 17556947451fSStefano Zampini a->vecinuse = 0; 17566947451fSStefano Zampini ierr = MatDenseRestoreArrayRead(a->A,&a->ptrinuse);CHKERRQ(ierr); 17576947451fSStefano Zampini ierr = VecLockReadPop(a->cvec);CHKERRQ(ierr); 17586947451fSStefano Zampini ierr = VecResetArray(a->cvec);CHKERRQ(ierr); 17596947451fSStefano Zampini *v = NULL; 17606947451fSStefano Zampini PetscFunctionReturn(0); 17616947451fSStefano Zampini } 17626947451fSStefano Zampini 17636947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecWrite_MPIDense(Mat A,PetscInt col,Vec *v) 17646947451fSStefano Zampini { 17656947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17666947451fSStefano Zampini PetscErrorCode ierr; 17676947451fSStefano Zampini PetscInt lda; 17686947451fSStefano Zampini 17696947451fSStefano Zampini PetscFunctionBegin; 1770616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1771616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 17726947451fSStefano Zampini if (!a->cvec) { 17736947451fSStefano Zampini ierr = VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr); 17746947451fSStefano Zampini } 17756947451fSStefano Zampini a->vecinuse = col + 1; 17766947451fSStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 17776947451fSStefano Zampini ierr = MatDenseGetArrayWrite(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 17786947451fSStefano Zampini ierr = VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr); 17796947451fSStefano Zampini *v = a->cvec; 17806947451fSStefano Zampini PetscFunctionReturn(0); 17816947451fSStefano Zampini } 17826947451fSStefano Zampini 17836947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDense(Mat A,PetscInt col,Vec *v) 17846947451fSStefano Zampini { 17856947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17866947451fSStefano Zampini PetscErrorCode ierr; 17876947451fSStefano Zampini 17886947451fSStefano Zampini PetscFunctionBegin; 1789616b8fbbSStefano Zampini if (!a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 1790616b8fbbSStefano Zampini if (!a->cvec) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 17916947451fSStefano Zampini a->vecinuse = 0; 17926947451fSStefano Zampini ierr = MatDenseRestoreArrayWrite(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 17936947451fSStefano Zampini ierr = VecResetArray(a->cvec);CHKERRQ(ierr); 17946947451fSStefano Zampini *v = NULL; 17956947451fSStefano Zampini PetscFunctionReturn(0); 17966947451fSStefano Zampini } 17976947451fSStefano Zampini 17985ea7661aSPierre Jolivet PetscErrorCode MatDenseGetSubMatrix_MPIDense(Mat A,PetscInt cbegin,PetscInt cend,Mat *v) 17995ea7661aSPierre Jolivet { 18005ea7661aSPierre Jolivet Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1801616b8fbbSStefano Zampini Mat_MPIDense *c; 18025ea7661aSPierre Jolivet PetscErrorCode ierr; 1803616b8fbbSStefano Zampini MPI_Comm comm; 1804616b8fbbSStefano Zampini PetscBool setup = PETSC_FALSE; 18055ea7661aSPierre Jolivet 18065ea7661aSPierre Jolivet PetscFunctionBegin; 1807616b8fbbSStefano Zampini ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 1808616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(comm,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1809616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(comm,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 18105ea7661aSPierre Jolivet if (!a->cmat) { 1811616b8fbbSStefano Zampini setup = PETSC_TRUE; 1812616b8fbbSStefano Zampini ierr = MatCreate(comm,&a->cmat);CHKERRQ(ierr); 1813616b8fbbSStefano Zampini ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)a->cmat);CHKERRQ(ierr); 1814616b8fbbSStefano Zampini ierr = MatSetType(a->cmat,((PetscObject)A)->type_name);CHKERRQ(ierr); 1815616b8fbbSStefano Zampini ierr = PetscLayoutReference(A->rmap,&a->cmat->rmap);CHKERRQ(ierr); 1816616b8fbbSStefano Zampini ierr = PetscLayoutSetSize(a->cmat->cmap,cend-cbegin);CHKERRQ(ierr); 1817616b8fbbSStefano Zampini ierr = PetscLayoutSetUp(a->cmat->cmap);CHKERRQ(ierr); 1818616b8fbbSStefano Zampini } else if (cend-cbegin != a->cmat->cmap->N) { 1819616b8fbbSStefano Zampini setup = PETSC_TRUE; 1820616b8fbbSStefano Zampini ierr = PetscLayoutDestroy(&a->cmat->cmap);CHKERRQ(ierr); 1821616b8fbbSStefano Zampini ierr = PetscLayoutCreate(comm,&a->cmat->cmap);CHKERRQ(ierr); 1822616b8fbbSStefano Zampini ierr = PetscLayoutSetSize(a->cmat->cmap,cend-cbegin);CHKERRQ(ierr); 1823616b8fbbSStefano Zampini ierr = PetscLayoutSetUp(a->cmat->cmap);CHKERRQ(ierr); 18245ea7661aSPierre Jolivet } 1825616b8fbbSStefano Zampini c = (Mat_MPIDense*)a->cmat->data; 1826616b8fbbSStefano Zampini if (c->A) SETERRQ(comm,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1827616b8fbbSStefano Zampini ierr = MatDenseGetSubMatrix(a->A,cbegin,cend,&c->A);CHKERRQ(ierr); 1828616b8fbbSStefano Zampini if (setup) { /* do we really need this? */ 1829616b8fbbSStefano Zampini ierr = MatSetUpMultiply_MPIDense(a->cmat);CHKERRQ(ierr); 1830616b8fbbSStefano Zampini } 1831616b8fbbSStefano Zampini a->cmat->preallocated = PETSC_TRUE; 1832616b8fbbSStefano Zampini a->cmat->assembled = PETSC_TRUE; 18335ea7661aSPierre Jolivet a->matinuse = cbegin + 1; 18345ea7661aSPierre Jolivet *v = a->cmat; 18355ea7661aSPierre Jolivet PetscFunctionReturn(0); 18365ea7661aSPierre Jolivet } 18375ea7661aSPierre Jolivet 18385ea7661aSPierre Jolivet PetscErrorCode MatDenseRestoreSubMatrix_MPIDense(Mat A,Mat *v) 18395ea7661aSPierre Jolivet { 18405ea7661aSPierre Jolivet Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1841616b8fbbSStefano Zampini Mat_MPIDense *c; 18425ea7661aSPierre Jolivet PetscErrorCode ierr; 18435ea7661aSPierre Jolivet 18445ea7661aSPierre Jolivet PetscFunctionBegin; 1845616b8fbbSStefano Zampini if (!a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetSubMatrix() first"); 1846616b8fbbSStefano Zampini if (!a->cmat) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal matrix"); 1847616b8fbbSStefano Zampini if (*v != a->cmat) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Not the matrix obtained from MatDenseGetSubMatrix()"); 18485ea7661aSPierre Jolivet a->matinuse = 0; 1849616b8fbbSStefano Zampini c = (Mat_MPIDense*)a->cmat->data; 1850616b8fbbSStefano Zampini ierr = MatDenseRestoreSubMatrix(a->A,&c->A);CHKERRQ(ierr); 18515ea7661aSPierre Jolivet *v = NULL; 18525ea7661aSPierre Jolivet PetscFunctionReturn(0); 18535ea7661aSPierre Jolivet } 18545ea7661aSPierre Jolivet 18558cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIDense(Mat mat) 1856273d9f13SBarry Smith { 1857273d9f13SBarry Smith Mat_MPIDense *a; 1858dfbe8321SBarry Smith PetscErrorCode ierr; 1859273d9f13SBarry Smith 1860273d9f13SBarry Smith PetscFunctionBegin; 1861b00a9115SJed Brown ierr = PetscNewLog(mat,&a);CHKERRQ(ierr); 1862b0a32e0cSBarry Smith mat->data = (void*)a; 1863273d9f13SBarry Smith ierr = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1864273d9f13SBarry Smith 1865273d9f13SBarry Smith mat->insertmode = NOT_SET_VALUES; 1866273d9f13SBarry Smith 1867273d9f13SBarry Smith /* build cache for off array entries formed */ 1868273d9f13SBarry Smith a->donotstash = PETSC_FALSE; 18692205254eSKarl Rupp 1870ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)mat),1,&mat->stash);CHKERRQ(ierr); 1871273d9f13SBarry Smith 1872273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 1873273d9f13SBarry Smith a->lvec = 0; 1874273d9f13SBarry Smith a->Mvctx = 0; 1875273d9f13SBarry Smith a->roworiented = PETSC_TRUE; 1876273d9f13SBarry Smith 187749a6ff4bSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",MatDenseGetLDA_MPIDense);CHKERRQ(ierr); 1878ad16ce7aSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseSetLDA_C",MatDenseSetLDA_MPIDense);CHKERRQ(ierr); 1879bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",MatDenseGetArray_MPIDense);CHKERRQ(ierr); 18808572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",MatDenseRestoreArray_MPIDense);CHKERRQ(ierr); 18818572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",MatDenseGetArrayRead_MPIDense);CHKERRQ(ierr); 18828572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",MatDenseRestoreArrayRead_MPIDense);CHKERRQ(ierr); 18836947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayWrite_C",MatDenseGetArrayWrite_MPIDense);CHKERRQ(ierr); 18846947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayWrite_C",MatDenseRestoreArrayWrite_MPIDense);CHKERRQ(ierr); 1885d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",MatDensePlaceArray_MPIDense);CHKERRQ(ierr); 1886d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",MatDenseResetArray_MPIDense);CHKERRQ(ierr); 1887d5ea218eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseReplaceArray_C",MatDenseReplaceArray_MPIDense);CHKERRQ(ierr); 18886947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDense);CHKERRQ(ierr); 18896947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDense);CHKERRQ(ierr); 18906947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDense);CHKERRQ(ierr); 18916947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDense);CHKERRQ(ierr); 18926947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDense);CHKERRQ(ierr); 18936947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDense);CHKERRQ(ierr); 18945ea7661aSPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetSubMatrix_C",MatDenseGetSubMatrix_MPIDense);CHKERRQ(ierr); 18955ea7661aSPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreSubMatrix_C",MatDenseRestoreSubMatrix_MPIDense);CHKERRQ(ierr); 18968baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 18978baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",MatConvert_MPIDense_Elemental);CHKERRQ(ierr); 18988baccfbdSHong Zhang #endif 1899d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 1900d24d4204SJose E. Roman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_scalapack_C",MatConvert_Dense_ScaLAPACK);CHKERRQ(ierr); 1901d24d4204SJose E. Roman #endif 1902637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1903637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_mpidensecuda_C",MatConvert_MPIDense_MPIDenseCUDA);CHKERRQ(ierr); 1904637a0070SStefano Zampini #endif 1905bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",MatMPIDenseSetPreallocation_MPIDense);CHKERRQ(ierr); 19064222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaij_mpidense_C",MatProductSetFromOptions_MPIAIJ_MPIDense);CHKERRQ(ierr); 19074222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaij_C",MatProductSetFromOptions_MPIDense_MPIAIJ);CHKERRQ(ierr); 19086718818eSStefano Zampini #if defined(PETSC_HAVE_CUDA) 19096718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaijcusparse_mpidense_C",MatProductSetFromOptions_MPIAIJ_MPIDense);CHKERRQ(ierr); 19106718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaijcusparse_C",MatProductSetFromOptions_MPIDense_MPIAIJ);CHKERRQ(ierr); 19116718818eSStefano Zampini #endif 19128949adfdSHong Zhang 1913af53bab2SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",MatDenseGetColumn_MPIDense);CHKERRQ(ierr); 1914af53bab2SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",MatDenseRestoreColumn_MPIDense);CHKERRQ(ierr); 191538aed534SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)mat,MATMPIDENSE);CHKERRQ(ierr); 1916273d9f13SBarry Smith PetscFunctionReturn(0); 1917273d9f13SBarry Smith } 1918273d9f13SBarry Smith 1919209238afSKris Buschelman /*MC 1920637a0070SStefano Zampini MATMPIDENSECUDA - MATMPIDENSECUDA = "mpidensecuda" - A matrix type to be used for distributed dense matrices on GPUs. 1921637a0070SStefano Zampini 1922637a0070SStefano Zampini Options Database Keys: 1923637a0070SStefano Zampini . -mat_type mpidensecuda - sets the matrix type to "mpidensecuda" during a call to MatSetFromOptions() 1924637a0070SStefano Zampini 1925637a0070SStefano Zampini Level: beginner 1926637a0070SStefano Zampini 1927637a0070SStefano Zampini .seealso: 1928637a0070SStefano Zampini 1929637a0070SStefano Zampini M*/ 1930637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1931637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreate_MPIDenseCUDA(Mat B) 1932637a0070SStefano Zampini { 1933637a0070SStefano Zampini PetscErrorCode ierr; 1934637a0070SStefano Zampini 1935637a0070SStefano Zampini PetscFunctionBegin; 1936637a0070SStefano Zampini ierr = MatCreate_MPIDense(B);CHKERRQ(ierr); 1937637a0070SStefano Zampini ierr = MatConvert_MPIDense_MPIDenseCUDA(B,MATMPIDENSECUDA,MAT_INPLACE_MATRIX,&B);CHKERRQ(ierr); 1938637a0070SStefano Zampini PetscFunctionReturn(0); 1939637a0070SStefano Zampini } 1940637a0070SStefano Zampini #endif 1941637a0070SStefano Zampini 1942637a0070SStefano Zampini /*MC 1943002d173eSKris Buschelman MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices. 1944209238afSKris Buschelman 1945209238afSKris Buschelman This matrix type is identical to MATSEQDENSE when constructed with a single process communicator, 1946209238afSKris Buschelman and MATMPIDENSE otherwise. 1947209238afSKris Buschelman 1948209238afSKris Buschelman Options Database Keys: 1949209238afSKris Buschelman . -mat_type dense - sets the matrix type to "dense" during a call to MatSetFromOptions() 1950209238afSKris Buschelman 1951209238afSKris Buschelman Level: beginner 1952209238afSKris Buschelman 195301b82886SBarry Smith 19546947451fSStefano Zampini .seealso: MATSEQDENSE,MATMPIDENSE,MATDENSECUDA 19556947451fSStefano Zampini M*/ 19566947451fSStefano Zampini 19576947451fSStefano Zampini /*MC 19586947451fSStefano Zampini MATDENSECUDA - MATDENSECUDA = "densecuda" - A matrix type to be used for dense matrices on GPUs. 19596947451fSStefano Zampini 19606947451fSStefano Zampini This matrix type is identical to MATSEQDENSECUDA when constructed with a single process communicator, 19616947451fSStefano Zampini and MATMPIDENSECUDA otherwise. 19626947451fSStefano Zampini 19636947451fSStefano Zampini Options Database Keys: 19646947451fSStefano Zampini . -mat_type densecuda - sets the matrix type to "densecuda" during a call to MatSetFromOptions() 19656947451fSStefano Zampini 19666947451fSStefano Zampini Level: beginner 19676947451fSStefano Zampini 19686947451fSStefano Zampini .seealso: MATSEQDENSECUDA,MATMPIDENSECUDA,MATDENSE 1969209238afSKris Buschelman M*/ 1970209238afSKris Buschelman 1971273d9f13SBarry Smith /*@C 1972273d9f13SBarry Smith MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries 1973273d9f13SBarry Smith 1974273d9f13SBarry Smith Not collective 1975273d9f13SBarry Smith 1976273d9f13SBarry Smith Input Parameters: 19771c4f3114SJed Brown . B - the matrix 19780298fd71SBarry Smith - data - optional location of matrix data. Set data=NULL for PETSc 1979273d9f13SBarry Smith to control all matrix memory allocation. 1980273d9f13SBarry Smith 1981273d9f13SBarry Smith Notes: 1982273d9f13SBarry Smith The dense format is fully compatible with standard Fortran 77 1983273d9f13SBarry Smith storage by columns. 1984273d9f13SBarry Smith 1985273d9f13SBarry Smith The data input variable is intended primarily for Fortran programmers 1986273d9f13SBarry Smith who wish to allocate their own matrix memory space. Most users should 19870298fd71SBarry Smith set data=NULL. 1988273d9f13SBarry Smith 1989273d9f13SBarry Smith Level: intermediate 1990273d9f13SBarry Smith 1991273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 1992273d9f13SBarry Smith @*/ 19931c4f3114SJed Brown PetscErrorCode MatMPIDenseSetPreallocation(Mat B,PetscScalar *data) 1994273d9f13SBarry Smith { 19954ac538c5SBarry Smith PetscErrorCode ierr; 1996273d9f13SBarry Smith 1997273d9f13SBarry Smith PetscFunctionBegin; 1998d5ea218eSStefano Zampini PetscValidHeaderSpecific(B,MAT_CLASSID,1); 19991c4f3114SJed Brown ierr = PetscTryMethod(B,"MatMPIDenseSetPreallocation_C",(Mat,PetscScalar*),(B,data));CHKERRQ(ierr); 2000273d9f13SBarry Smith PetscFunctionReturn(0); 2001273d9f13SBarry Smith } 2002273d9f13SBarry Smith 2003d3042a70SBarry Smith /*@ 2004637a0070SStefano Zampini MatDensePlaceArray - Allows one to replace the array in a dense matrix with an 2005d3042a70SBarry Smith array provided by the user. This is useful to avoid copying an array 2006d3042a70SBarry Smith into a matrix 2007d3042a70SBarry Smith 2008d3042a70SBarry Smith Not Collective 2009d3042a70SBarry Smith 2010d3042a70SBarry Smith Input Parameters: 2011d3042a70SBarry Smith + mat - the matrix 2012d3042a70SBarry Smith - array - the array in column major order 2013d3042a70SBarry Smith 2014d3042a70SBarry Smith Notes: 2015d3042a70SBarry Smith You can return to the original array with a call to MatDenseResetArray(). The user is responsible for freeing this array; it will not be 2016d3042a70SBarry Smith freed when the matrix is destroyed. 2017d3042a70SBarry Smith 2018d3042a70SBarry Smith Level: developer 2019d3042a70SBarry Smith 2020d3042a70SBarry Smith .seealso: MatDenseGetArray(), MatDenseResetArray(), VecPlaceArray(), VecGetArray(), VecRestoreArray(), VecReplaceArray(), VecResetArray() 2021d3042a70SBarry Smith 2022d3042a70SBarry Smith @*/ 2023637a0070SStefano Zampini PetscErrorCode MatDensePlaceArray(Mat mat,const PetscScalar *array) 2024d3042a70SBarry Smith { 2025d3042a70SBarry Smith PetscErrorCode ierr; 2026637a0070SStefano Zampini 2027d3042a70SBarry Smith PetscFunctionBegin; 2028d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2029d3042a70SBarry Smith ierr = PetscUseMethod(mat,"MatDensePlaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr); 2030d3042a70SBarry Smith ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 2031637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 2032637a0070SStefano Zampini mat->offloadmask = PETSC_OFFLOAD_CPU; 2033637a0070SStefano Zampini #endif 2034d3042a70SBarry Smith PetscFunctionReturn(0); 2035d3042a70SBarry Smith } 2036d3042a70SBarry Smith 2037d3042a70SBarry Smith /*@ 2038d3042a70SBarry Smith MatDenseResetArray - Resets the matrix array to that it previously had before the call to MatDensePlaceArray() 2039d3042a70SBarry Smith 2040d3042a70SBarry Smith Not Collective 2041d3042a70SBarry Smith 2042d3042a70SBarry Smith Input Parameters: 2043d3042a70SBarry Smith . mat - the matrix 2044d3042a70SBarry Smith 2045d3042a70SBarry Smith Notes: 2046d3042a70SBarry Smith You can only call this after a call to MatDensePlaceArray() 2047d3042a70SBarry Smith 2048d3042a70SBarry Smith Level: developer 2049d3042a70SBarry Smith 2050d3042a70SBarry Smith .seealso: MatDenseGetArray(), MatDensePlaceArray(), VecPlaceArray(), VecGetArray(), VecRestoreArray(), VecReplaceArray(), VecResetArray() 2051d3042a70SBarry Smith 2052d3042a70SBarry Smith @*/ 2053d3042a70SBarry Smith PetscErrorCode MatDenseResetArray(Mat mat) 2054d3042a70SBarry Smith { 2055d3042a70SBarry Smith PetscErrorCode ierr; 2056637a0070SStefano Zampini 2057d3042a70SBarry Smith PetscFunctionBegin; 2058d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2059d3042a70SBarry Smith ierr = PetscUseMethod(mat,"MatDenseResetArray_C",(Mat),(mat));CHKERRQ(ierr); 2060d3042a70SBarry Smith ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 2061d3042a70SBarry Smith PetscFunctionReturn(0); 2062d3042a70SBarry Smith } 2063d3042a70SBarry Smith 2064d5ea218eSStefano Zampini /*@ 2065d5ea218eSStefano Zampini MatDenseReplaceArray - Allows one to replace the array in a dense matrix with an 2066d5ea218eSStefano Zampini array provided by the user. This is useful to avoid copying an array 2067d5ea218eSStefano Zampini into a matrix 2068d5ea218eSStefano Zampini 2069d5ea218eSStefano Zampini Not Collective 2070d5ea218eSStefano Zampini 2071d5ea218eSStefano Zampini Input Parameters: 2072d5ea218eSStefano Zampini + mat - the matrix 2073d5ea218eSStefano Zampini - array - the array in column major order 2074d5ea218eSStefano Zampini 2075d5ea218eSStefano Zampini Notes: 2076d5ea218eSStefano Zampini The memory passed in MUST be obtained with PetscMalloc() and CANNOT be 2077d5ea218eSStefano Zampini freed by the user. It will be freed when the matrix is destroyed. 2078d5ea218eSStefano Zampini 2079d5ea218eSStefano Zampini Level: developer 2080d5ea218eSStefano Zampini 2081d5ea218eSStefano Zampini .seealso: MatDenseGetArray(), VecReplaceArray() 2082d5ea218eSStefano Zampini @*/ 2083d5ea218eSStefano Zampini PetscErrorCode MatDenseReplaceArray(Mat mat,const PetscScalar *array) 2084d5ea218eSStefano Zampini { 2085d5ea218eSStefano Zampini PetscErrorCode ierr; 2086d5ea218eSStefano Zampini 2087d5ea218eSStefano Zampini PetscFunctionBegin; 2088d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2089d5ea218eSStefano Zampini ierr = PetscUseMethod(mat,"MatDenseReplaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr); 2090d5ea218eSStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 2091d5ea218eSStefano Zampini #if defined(PETSC_HAVE_CUDA) 2092d5ea218eSStefano Zampini mat->offloadmask = PETSC_OFFLOAD_CPU; 2093d5ea218eSStefano Zampini #endif 2094d5ea218eSStefano Zampini PetscFunctionReturn(0); 2095d5ea218eSStefano Zampini } 2096d5ea218eSStefano Zampini 2097637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 20988965ea79SLois Curfman McInnes /*@C 2099637a0070SStefano Zampini MatDenseCUDAPlaceArray - Allows one to replace the GPU array in a dense matrix with an 2100637a0070SStefano Zampini array provided by the user. This is useful to avoid copying an array 2101637a0070SStefano Zampini into a matrix 2102637a0070SStefano Zampini 2103637a0070SStefano Zampini Not Collective 2104637a0070SStefano Zampini 2105637a0070SStefano Zampini Input Parameters: 2106637a0070SStefano Zampini + mat - the matrix 2107637a0070SStefano Zampini - array - the array in column major order 2108637a0070SStefano Zampini 2109637a0070SStefano Zampini Notes: 2110637a0070SStefano Zampini You can return to the original array with a call to MatDenseCUDAResetArray(). The user is responsible for freeing this array; it will not be 2111637a0070SStefano Zampini freed when the matrix is destroyed. The array must have been allocated with cudaMalloc(). 2112637a0070SStefano Zampini 2113637a0070SStefano Zampini Level: developer 2114637a0070SStefano Zampini 2115637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDAResetArray() 2116637a0070SStefano Zampini @*/ 2117637a0070SStefano Zampini PetscErrorCode MatDenseCUDAPlaceArray(Mat mat,const PetscScalar *array) 2118637a0070SStefano Zampini { 2119637a0070SStefano Zampini PetscErrorCode ierr; 2120637a0070SStefano Zampini 2121637a0070SStefano Zampini PetscFunctionBegin; 2122d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2123637a0070SStefano Zampini ierr = PetscUseMethod(mat,"MatDenseCUDAPlaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr); 2124637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 2125637a0070SStefano Zampini mat->offloadmask = PETSC_OFFLOAD_GPU; 2126637a0070SStefano Zampini PetscFunctionReturn(0); 2127637a0070SStefano Zampini } 2128637a0070SStefano Zampini 2129637a0070SStefano Zampini /*@C 2130637a0070SStefano Zampini MatDenseCUDAResetArray - Resets the matrix array to that it previously had before the call to MatDenseCUDAPlaceArray() 2131637a0070SStefano Zampini 2132637a0070SStefano Zampini Not Collective 2133637a0070SStefano Zampini 2134637a0070SStefano Zampini Input Parameters: 2135637a0070SStefano Zampini . mat - the matrix 2136637a0070SStefano Zampini 2137637a0070SStefano Zampini Notes: 2138637a0070SStefano Zampini You can only call this after a call to MatDenseCUDAPlaceArray() 2139637a0070SStefano Zampini 2140637a0070SStefano Zampini Level: developer 2141637a0070SStefano Zampini 2142637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDAPlaceArray() 2143637a0070SStefano Zampini 2144637a0070SStefano Zampini @*/ 2145637a0070SStefano Zampini PetscErrorCode MatDenseCUDAResetArray(Mat mat) 2146637a0070SStefano Zampini { 2147637a0070SStefano Zampini PetscErrorCode ierr; 2148637a0070SStefano Zampini 2149637a0070SStefano Zampini PetscFunctionBegin; 2150d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2151637a0070SStefano Zampini ierr = PetscUseMethod(mat,"MatDenseCUDAResetArray_C",(Mat),(mat));CHKERRQ(ierr); 2152637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 2153637a0070SStefano Zampini PetscFunctionReturn(0); 2154637a0070SStefano Zampini } 2155637a0070SStefano Zampini 2156637a0070SStefano Zampini /*@C 2157d5ea218eSStefano Zampini MatDenseCUDAReplaceArray - Allows one to replace the GPU array in a dense matrix with an 2158d5ea218eSStefano Zampini array provided by the user. This is useful to avoid copying an array 2159d5ea218eSStefano Zampini into a matrix 2160d5ea218eSStefano Zampini 2161d5ea218eSStefano Zampini Not Collective 2162d5ea218eSStefano Zampini 2163d5ea218eSStefano Zampini Input Parameters: 2164d5ea218eSStefano Zampini + mat - the matrix 2165d5ea218eSStefano Zampini - array - the array in column major order 2166d5ea218eSStefano Zampini 2167d5ea218eSStefano Zampini Notes: 2168d5ea218eSStefano Zampini This permanently replaces the GPU array and frees the memory associated with the old GPU array. 2169d5ea218eSStefano Zampini The memory passed in CANNOT be freed by the user. It will be freed 2170d5ea218eSStefano Zampini when the matrix is destroyed. The array should respect the matrix leading dimension. 2171d5ea218eSStefano Zampini 2172d5ea218eSStefano Zampini Level: developer 2173d5ea218eSStefano Zampini 2174d5ea218eSStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDAPlaceArray(), MatDenseCUDAResetArray() 2175d5ea218eSStefano Zampini @*/ 2176d5ea218eSStefano Zampini PetscErrorCode MatDenseCUDAReplaceArray(Mat mat,const PetscScalar *array) 2177d5ea218eSStefano Zampini { 2178d5ea218eSStefano Zampini PetscErrorCode ierr; 2179d5ea218eSStefano Zampini 2180d5ea218eSStefano Zampini PetscFunctionBegin; 2181d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2182d5ea218eSStefano Zampini ierr = PetscUseMethod(mat,"MatDenseCUDAReplaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr); 2183d5ea218eSStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 2184d5ea218eSStefano Zampini mat->offloadmask = PETSC_OFFLOAD_GPU; 2185d5ea218eSStefano Zampini PetscFunctionReturn(0); 2186d5ea218eSStefano Zampini } 2187d5ea218eSStefano Zampini 2188d5ea218eSStefano Zampini /*@C 2189637a0070SStefano Zampini MatDenseCUDAGetArrayWrite - Provides write access to the CUDA buffer inside a dense matrix. 2190637a0070SStefano Zampini 2191637a0070SStefano Zampini Not Collective 2192637a0070SStefano Zampini 2193637a0070SStefano Zampini Input Parameters: 2194637a0070SStefano Zampini . A - the matrix 2195637a0070SStefano Zampini 2196637a0070SStefano Zampini Output Parameters 2197637a0070SStefano Zampini . array - the GPU array in column major order 2198637a0070SStefano Zampini 2199637a0070SStefano Zampini Notes: 2200637a0070SStefano Zampini The data on the GPU may not be updated due to operations done on the CPU. If you need updated data, use MatDenseCUDAGetArray(). The array must be restored with MatDenseCUDARestoreArrayWrite() when no longer needed. 2201637a0070SStefano Zampini 2202637a0070SStefano Zampini Level: developer 2203637a0070SStefano Zampini 2204637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayRead(), MatDenseCUDARestoreArrayRead() 2205637a0070SStefano Zampini @*/ 2206637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArrayWrite(Mat A, PetscScalar **a) 2207637a0070SStefano Zampini { 2208637a0070SStefano Zampini PetscErrorCode ierr; 2209637a0070SStefano Zampini 2210637a0070SStefano Zampini PetscFunctionBegin; 2211d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2212637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDAGetArrayWrite_C",(Mat,PetscScalar**),(A,a));CHKERRQ(ierr); 2213637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr); 2214637a0070SStefano Zampini PetscFunctionReturn(0); 2215637a0070SStefano Zampini } 2216637a0070SStefano Zampini 2217637a0070SStefano Zampini /*@C 2218637a0070SStefano Zampini MatDenseCUDARestoreArrayWrite - Restore write access to the CUDA buffer inside a dense matrix previously obtained with MatDenseCUDAGetArrayWrite(). 2219637a0070SStefano Zampini 2220637a0070SStefano Zampini Not Collective 2221637a0070SStefano Zampini 2222637a0070SStefano Zampini Input Parameters: 2223637a0070SStefano Zampini + A - the matrix 2224637a0070SStefano Zampini - array - the GPU array in column major order 2225637a0070SStefano Zampini 2226637a0070SStefano Zampini Notes: 2227637a0070SStefano Zampini 2228637a0070SStefano Zampini Level: developer 2229637a0070SStefano Zampini 2230637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead(), MatDenseCUDAGetArrayRead() 2231637a0070SStefano Zampini @*/ 2232637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArrayWrite(Mat A, PetscScalar **a) 2233637a0070SStefano Zampini { 2234637a0070SStefano Zampini PetscErrorCode ierr; 2235637a0070SStefano Zampini 2236637a0070SStefano Zampini PetscFunctionBegin; 2237d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2238637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDARestoreArrayWrite_C",(Mat,PetscScalar**),(A,a));CHKERRQ(ierr); 2239637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr); 2240637a0070SStefano Zampini A->offloadmask = PETSC_OFFLOAD_GPU; 2241637a0070SStefano Zampini PetscFunctionReturn(0); 2242637a0070SStefano Zampini } 2243637a0070SStefano Zampini 2244637a0070SStefano Zampini /*@C 2245637a0070SStefano Zampini MatDenseCUDAGetArrayRead - Provides read-only access to the CUDA buffer inside a dense matrix. The array must be restored with MatDenseCUDARestoreArrayRead() when no longer needed. 2246637a0070SStefano Zampini 2247637a0070SStefano Zampini Not Collective 2248637a0070SStefano Zampini 2249637a0070SStefano Zampini Input Parameters: 2250637a0070SStefano Zampini . A - the matrix 2251637a0070SStefano Zampini 2252637a0070SStefano Zampini Output Parameters 2253637a0070SStefano Zampini . array - the GPU array in column major order 2254637a0070SStefano Zampini 2255637a0070SStefano Zampini Notes: 2256637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). 2257637a0070SStefano Zampini 2258637a0070SStefano Zampini Level: developer 2259637a0070SStefano Zampini 2260637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead() 2261637a0070SStefano Zampini @*/ 2262637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArrayRead(Mat A, const PetscScalar **a) 2263637a0070SStefano Zampini { 2264637a0070SStefano Zampini PetscErrorCode ierr; 2265637a0070SStefano Zampini 2266637a0070SStefano Zampini PetscFunctionBegin; 2267d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2268637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDAGetArrayRead_C",(Mat,const PetscScalar**),(A,a));CHKERRQ(ierr); 2269637a0070SStefano Zampini PetscFunctionReturn(0); 2270637a0070SStefano Zampini } 2271637a0070SStefano Zampini 2272637a0070SStefano Zampini /*@C 2273637a0070SStefano Zampini MatDenseCUDARestoreArrayRead - Restore read-only access to the CUDA buffer inside a dense matrix previously obtained with a call to MatDenseCUDAGetArrayRead(). 2274637a0070SStefano Zampini 2275637a0070SStefano Zampini Not Collective 2276637a0070SStefano Zampini 2277637a0070SStefano Zampini Input Parameters: 2278637a0070SStefano Zampini + A - the matrix 2279637a0070SStefano Zampini - array - the GPU array in column major order 2280637a0070SStefano Zampini 2281637a0070SStefano Zampini Notes: 2282637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). 2283637a0070SStefano Zampini 2284637a0070SStefano Zampini Level: developer 2285637a0070SStefano Zampini 2286637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDAGetArrayRead() 2287637a0070SStefano Zampini @*/ 2288637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArrayRead(Mat A, const PetscScalar **a) 2289637a0070SStefano Zampini { 2290637a0070SStefano Zampini PetscErrorCode ierr; 2291637a0070SStefano Zampini 2292637a0070SStefano Zampini PetscFunctionBegin; 2293637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDARestoreArrayRead_C",(Mat,const PetscScalar**),(A,a));CHKERRQ(ierr); 2294637a0070SStefano Zampini PetscFunctionReturn(0); 2295637a0070SStefano Zampini } 2296637a0070SStefano Zampini 2297637a0070SStefano Zampini /*@C 2298637a0070SStefano Zampini MatDenseCUDAGetArray - Provides access to the CUDA buffer inside a dense matrix. The array must be restored with MatDenseCUDARestoreArray() when no longer needed. 2299637a0070SStefano Zampini 2300637a0070SStefano Zampini Not Collective 2301637a0070SStefano Zampini 2302637a0070SStefano Zampini Input Parameters: 2303637a0070SStefano Zampini . A - the matrix 2304637a0070SStefano Zampini 2305637a0070SStefano Zampini Output Parameters 2306637a0070SStefano Zampini . array - the GPU array in column major order 2307637a0070SStefano Zampini 2308637a0070SStefano Zampini Notes: 2309637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). For read-only access, use MatDenseCUDAGetArrayRead(). 2310637a0070SStefano Zampini 2311637a0070SStefano Zampini Level: developer 2312637a0070SStefano Zampini 2313637a0070SStefano Zampini .seealso: MatDenseCUDAGetArrayRead(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead() 2314637a0070SStefano Zampini @*/ 2315637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArray(Mat A, PetscScalar **a) 2316637a0070SStefano Zampini { 2317637a0070SStefano Zampini PetscErrorCode ierr; 2318637a0070SStefano Zampini 2319637a0070SStefano Zampini PetscFunctionBegin; 2320d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2321637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDAGetArray_C",(Mat,PetscScalar**),(A,a));CHKERRQ(ierr); 2322637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr); 2323637a0070SStefano Zampini PetscFunctionReturn(0); 2324637a0070SStefano Zampini } 2325637a0070SStefano Zampini 2326637a0070SStefano Zampini /*@C 2327637a0070SStefano Zampini MatDenseCUDARestoreArray - Restore access to the CUDA buffer inside a dense matrix previously obtained with MatDenseCUDAGetArray(). 2328637a0070SStefano Zampini 2329637a0070SStefano Zampini Not Collective 2330637a0070SStefano Zampini 2331637a0070SStefano Zampini Input Parameters: 2332637a0070SStefano Zampini + A - the matrix 2333637a0070SStefano Zampini - array - the GPU array in column major order 2334637a0070SStefano Zampini 2335637a0070SStefano Zampini Notes: 2336637a0070SStefano Zampini 2337637a0070SStefano Zampini Level: developer 2338637a0070SStefano Zampini 2339637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead(), MatDenseCUDAGetArrayRead() 2340637a0070SStefano Zampini @*/ 2341637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArray(Mat A, PetscScalar **a) 2342637a0070SStefano Zampini { 2343637a0070SStefano Zampini PetscErrorCode ierr; 2344637a0070SStefano Zampini 2345637a0070SStefano Zampini PetscFunctionBegin; 2346d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2347637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDARestoreArray_C",(Mat,PetscScalar**),(A,a));CHKERRQ(ierr); 2348637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr); 2349637a0070SStefano Zampini A->offloadmask = PETSC_OFFLOAD_GPU; 2350637a0070SStefano Zampini PetscFunctionReturn(0); 2351637a0070SStefano Zampini } 2352637a0070SStefano Zampini #endif 2353637a0070SStefano Zampini 2354637a0070SStefano Zampini /*@C 2355637a0070SStefano Zampini MatCreateDense - Creates a matrix in dense format. 23568965ea79SLois Curfman McInnes 2357d083f849SBarry Smith Collective 2358db81eaa0SLois Curfman McInnes 23598965ea79SLois Curfman McInnes Input Parameters: 2360db81eaa0SLois Curfman McInnes + comm - MPI communicator 23618965ea79SLois Curfman McInnes . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2362db81eaa0SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 23638965ea79SLois Curfman McInnes . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 2364db81eaa0SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 23656cfe35ddSJose E. Roman - data - optional location of matrix data. Set data=NULL (PETSC_NULL_SCALAR for Fortran users) for PETSc 2366dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 23678965ea79SLois Curfman McInnes 23688965ea79SLois Curfman McInnes Output Parameter: 2369477f1c0bSLois Curfman McInnes . A - the matrix 23708965ea79SLois Curfman McInnes 2371b259b22eSLois Curfman McInnes Notes: 237239ddd567SLois Curfman McInnes The dense format is fully compatible with standard Fortran 77 237339ddd567SLois Curfman McInnes storage by columns. 23748965ea79SLois Curfman McInnes 237518f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 237618f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 23776cfe35ddSJose E. Roman set data=NULL (PETSC_NULL_SCALAR for Fortran users). 237818f449edSLois Curfman McInnes 23798965ea79SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 23808965ea79SLois Curfman McInnes (possibly both). 23818965ea79SLois Curfman McInnes 2382027ccd11SLois Curfman McInnes Level: intermediate 2383027ccd11SLois Curfman McInnes 238439ddd567SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 23858965ea79SLois Curfman McInnes @*/ 238669b1f4b7SBarry Smith PetscErrorCode MatCreateDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 23878965ea79SLois Curfman McInnes { 23886849ba73SBarry Smith PetscErrorCode ierr; 238913f74950SBarry Smith PetscMPIInt size; 23908965ea79SLois Curfman McInnes 23913a40ed3dSBarry Smith PetscFunctionBegin; 2392f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 23938491ab44SLisandro Dalcin PetscValidLogicalCollectiveBool(*A,!!data,6); 2394f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2395273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2396273d9f13SBarry Smith if (size > 1) { 2397273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIDENSE);CHKERRQ(ierr); 2398273d9f13SBarry Smith ierr = MatMPIDenseSetPreallocation(*A,data);CHKERRQ(ierr); 23996cfe35ddSJose E. Roman if (data) { /* user provided data array, so no need to assemble */ 24006cfe35ddSJose E. Roman ierr = MatSetUpMultiply_MPIDense(*A);CHKERRQ(ierr); 24016cfe35ddSJose E. Roman (*A)->assembled = PETSC_TRUE; 24026cfe35ddSJose E. Roman } 2403273d9f13SBarry Smith } else { 2404273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr); 2405273d9f13SBarry Smith ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr); 24068c469469SLois Curfman McInnes } 24073a40ed3dSBarry Smith PetscFunctionReturn(0); 24088965ea79SLois Curfman McInnes } 24098965ea79SLois Curfman McInnes 2410637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 2411637a0070SStefano Zampini /*@C 2412637a0070SStefano Zampini MatCreateDenseCUDA - Creates a matrix in dense format using CUDA. 2413637a0070SStefano Zampini 2414637a0070SStefano Zampini Collective 2415637a0070SStefano Zampini 2416637a0070SStefano Zampini Input Parameters: 2417637a0070SStefano Zampini + comm - MPI communicator 2418637a0070SStefano Zampini . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2419637a0070SStefano Zampini . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 2420637a0070SStefano Zampini . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 2421637a0070SStefano Zampini . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 2422637a0070SStefano Zampini - data - optional location of GPU matrix data. Set data=NULL for PETSc 2423637a0070SStefano Zampini to control matrix memory allocation. 2424637a0070SStefano Zampini 2425637a0070SStefano Zampini Output Parameter: 2426637a0070SStefano Zampini . A - the matrix 2427637a0070SStefano Zampini 2428637a0070SStefano Zampini Notes: 2429637a0070SStefano Zampini 2430637a0070SStefano Zampini Level: intermediate 2431637a0070SStefano Zampini 2432637a0070SStefano Zampini .seealso: MatCreate(), MatCreateDense() 2433637a0070SStefano Zampini @*/ 2434637a0070SStefano Zampini PetscErrorCode MatCreateDenseCUDA(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 2435637a0070SStefano Zampini { 2436637a0070SStefano Zampini PetscErrorCode ierr; 2437637a0070SStefano Zampini PetscMPIInt size; 2438637a0070SStefano Zampini 2439637a0070SStefano Zampini PetscFunctionBegin; 2440637a0070SStefano Zampini ierr = MatCreate(comm,A);CHKERRQ(ierr); 2441637a0070SStefano Zampini PetscValidLogicalCollectiveBool(*A,!!data,6); 2442637a0070SStefano Zampini ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2443637a0070SStefano Zampini ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2444637a0070SStefano Zampini if (size > 1) { 2445637a0070SStefano Zampini ierr = MatSetType(*A,MATMPIDENSECUDA);CHKERRQ(ierr); 2446637a0070SStefano Zampini ierr = MatMPIDenseCUDASetPreallocation(*A,data);CHKERRQ(ierr); 2447637a0070SStefano Zampini if (data) { /* user provided data array, so no need to assemble */ 2448637a0070SStefano Zampini ierr = MatSetUpMultiply_MPIDense(*A);CHKERRQ(ierr); 2449637a0070SStefano Zampini (*A)->assembled = PETSC_TRUE; 2450637a0070SStefano Zampini } 2451637a0070SStefano Zampini } else { 2452637a0070SStefano Zampini ierr = MatSetType(*A,MATSEQDENSECUDA);CHKERRQ(ierr); 2453637a0070SStefano Zampini ierr = MatSeqDenseCUDASetPreallocation(*A,data);CHKERRQ(ierr); 2454637a0070SStefano Zampini } 2455637a0070SStefano Zampini PetscFunctionReturn(0); 2456637a0070SStefano Zampini } 2457637a0070SStefano Zampini #endif 2458637a0070SStefano Zampini 24596849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat) 24608965ea79SLois Curfman McInnes { 24618965ea79SLois Curfman McInnes Mat mat; 24623501a2bdSLois Curfman McInnes Mat_MPIDense *a,*oldmat = (Mat_MPIDense*)A->data; 2463dfbe8321SBarry Smith PetscErrorCode ierr; 24648965ea79SLois Curfman McInnes 24653a40ed3dSBarry Smith PetscFunctionBegin; 24668965ea79SLois Curfman McInnes *newmat = 0; 2467ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&mat);CHKERRQ(ierr); 2468d0f46423SBarry Smith ierr = MatSetSizes(mat,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 24697adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)A)->type_name);CHKERRQ(ierr); 2470834f8fabSBarry Smith a = (Mat_MPIDense*)mat->data; 24715aa7edbeSHong Zhang 2472d5f3da31SBarry Smith mat->factortype = A->factortype; 2473c456f294SBarry Smith mat->assembled = PETSC_TRUE; 2474273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 24758965ea79SLois Curfman McInnes 2476e0fa3b82SLois Curfman McInnes mat->insertmode = NOT_SET_VALUES; 24773782ba37SSatish Balay a->donotstash = oldmat->donotstash; 2478e04c1aa4SHong Zhang 24791e1e43feSBarry Smith ierr = PetscLayoutReference(A->rmap,&mat->rmap);CHKERRQ(ierr); 24801e1e43feSBarry Smith ierr = PetscLayoutReference(A->cmap,&mat->cmap);CHKERRQ(ierr); 24818965ea79SLois Curfman McInnes 24825609ef8eSBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 24833bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 2484637a0070SStefano Zampini ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 248501b82886SBarry Smith 24868965ea79SLois Curfman McInnes *newmat = mat; 24873a40ed3dSBarry Smith PetscFunctionReturn(0); 24888965ea79SLois Curfman McInnes } 24898965ea79SLois Curfman McInnes 2490eb91f321SVaclav Hapla PetscErrorCode MatLoad_MPIDense(Mat newMat, PetscViewer viewer) 2491eb91f321SVaclav Hapla { 2492eb91f321SVaclav Hapla PetscErrorCode ierr; 249387d5ce66SSatish Balay PetscBool isbinary; 249487d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 249587d5ce66SSatish Balay PetscBool ishdf5; 249687d5ce66SSatish Balay #endif 2497eb91f321SVaclav Hapla 2498eb91f321SVaclav Hapla PetscFunctionBegin; 2499eb91f321SVaclav Hapla PetscValidHeaderSpecific(newMat,MAT_CLASSID,1); 2500eb91f321SVaclav Hapla PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2); 2501eb91f321SVaclav Hapla /* force binary viewer to load .info file if it has not yet done so */ 2502eb91f321SVaclav Hapla ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr); 2503eb91f321SVaclav Hapla ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 250487d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 2505eb91f321SVaclav Hapla ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERHDF5, &ishdf5);CHKERRQ(ierr); 250687d5ce66SSatish Balay #endif 2507eb91f321SVaclav Hapla if (isbinary) { 25088491ab44SLisandro Dalcin ierr = MatLoad_Dense_Binary(newMat,viewer);CHKERRQ(ierr); 2509eb91f321SVaclav Hapla #if defined(PETSC_HAVE_HDF5) 251087d5ce66SSatish Balay } else if (ishdf5) { 2511eb91f321SVaclav Hapla ierr = MatLoad_Dense_HDF5(newMat,viewer);CHKERRQ(ierr); 2512eb91f321SVaclav Hapla #endif 251387d5ce66SSatish Balay } else SETERRQ2(PetscObjectComm((PetscObject)newMat),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)newMat)->type_name); 2514eb91f321SVaclav Hapla PetscFunctionReturn(0); 2515eb91f321SVaclav Hapla } 2516eb91f321SVaclav Hapla 25176718818eSStefano Zampini static PetscErrorCode MatEqual_MPIDense(Mat A,Mat B,PetscBool *flag) 25186e4ee0c6SHong Zhang { 25196e4ee0c6SHong Zhang Mat_MPIDense *matB = (Mat_MPIDense*)B->data,*matA = (Mat_MPIDense*)A->data; 25206e4ee0c6SHong Zhang Mat a,b; 2521ace3abfcSBarry Smith PetscBool flg; 25226e4ee0c6SHong Zhang PetscErrorCode ierr; 252390ace30eSBarry Smith 25246e4ee0c6SHong Zhang PetscFunctionBegin; 25256e4ee0c6SHong Zhang a = matA->A; 25266e4ee0c6SHong Zhang b = matB->A; 25276e4ee0c6SHong Zhang ierr = MatEqual(a,b,&flg);CHKERRQ(ierr); 2528b2566f29SBarry Smith ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 25296e4ee0c6SHong Zhang PetscFunctionReturn(0); 25306e4ee0c6SHong Zhang } 253190ace30eSBarry Smith 25326718818eSStefano Zampini PetscErrorCode MatDestroy_MatTransMatMult_MPIDense_MPIDense(void *data) 2533baa3c1c6SHong Zhang { 2534baa3c1c6SHong Zhang PetscErrorCode ierr; 25356718818eSStefano Zampini Mat_TransMatMultDense *atb = (Mat_TransMatMultDense *)data; 2536baa3c1c6SHong Zhang 2537baa3c1c6SHong Zhang PetscFunctionBegin; 2538637a0070SStefano Zampini ierr = PetscFree2(atb->sendbuf,atb->recvcounts);CHKERRQ(ierr); 2539637a0070SStefano Zampini ierr = MatDestroy(&atb->atb);CHKERRQ(ierr); 2540baa3c1c6SHong Zhang ierr = PetscFree(atb);CHKERRQ(ierr); 2541baa3c1c6SHong Zhang PetscFunctionReturn(0); 2542baa3c1c6SHong Zhang } 2543baa3c1c6SHong Zhang 25446718818eSStefano Zampini PetscErrorCode MatDestroy_MatMatTransMult_MPIDense_MPIDense(void *data) 2545cc48ffa7SToby Isaac { 2546cc48ffa7SToby Isaac PetscErrorCode ierr; 25476718818eSStefano Zampini Mat_MatTransMultDense *abt = (Mat_MatTransMultDense *)data; 2548cc48ffa7SToby Isaac 2549cc48ffa7SToby Isaac PetscFunctionBegin; 2550cc48ffa7SToby Isaac ierr = PetscFree2(abt->buf[0],abt->buf[1]);CHKERRQ(ierr); 2551faa55883SToby Isaac ierr = PetscFree2(abt->recvcounts,abt->recvdispls);CHKERRQ(ierr); 2552cc48ffa7SToby Isaac ierr = PetscFree(abt);CHKERRQ(ierr); 2553cc48ffa7SToby Isaac PetscFunctionReturn(0); 2554cc48ffa7SToby Isaac } 2555cc48ffa7SToby Isaac 25566718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 2557cb20be35SHong Zhang { 2558baa3c1c6SHong Zhang Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 25596718818eSStefano Zampini Mat_TransMatMultDense *atb; 2560cb20be35SHong Zhang PetscErrorCode ierr; 2561cb20be35SHong Zhang MPI_Comm comm; 25626718818eSStefano Zampini PetscMPIInt size,*recvcounts; 25636718818eSStefano Zampini PetscScalar *carray,*sendbuf; 2564637a0070SStefano Zampini const PetscScalar *atbarray; 2565d5017740SHong Zhang PetscInt i,cN=C->cmap->N,cM=C->rmap->N,proc,k,j; 2566e68c0b26SHong Zhang const PetscInt *ranges; 2567cb20be35SHong Zhang 2568cb20be35SHong Zhang PetscFunctionBegin; 25696718818eSStefano Zampini MatCheckProduct(C,3); 25706718818eSStefano Zampini if (!C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 25716718818eSStefano Zampini atb = (Mat_TransMatMultDense *)C->product->data; 25726718818eSStefano Zampini recvcounts = atb->recvcounts; 25736718818eSStefano Zampini sendbuf = atb->sendbuf; 25746718818eSStefano Zampini 2575cb20be35SHong Zhang ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 2576cb20be35SHong Zhang ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2577e68c0b26SHong Zhang 2578c5ef1628SHong Zhang /* compute atbarray = aseq^T * bseq */ 2579637a0070SStefano Zampini ierr = MatTransposeMatMult(a->A,b->A,atb->atb ? MAT_REUSE_MATRIX : MAT_INITIAL_MATRIX,PETSC_DEFAULT,&atb->atb);CHKERRQ(ierr); 2580cb20be35SHong Zhang 2581cb20be35SHong Zhang ierr = MatGetOwnershipRanges(C,&ranges);CHKERRQ(ierr); 2582cb20be35SHong Zhang 2583660d5466SHong Zhang /* arrange atbarray into sendbuf */ 2584637a0070SStefano Zampini ierr = MatDenseGetArrayRead(atb->atb,&atbarray);CHKERRQ(ierr); 2585637a0070SStefano Zampini for (proc=0, k=0; proc<size; proc++) { 2586baa3c1c6SHong Zhang for (j=0; j<cN; j++) { 2587c5ef1628SHong Zhang for (i=ranges[proc]; i<ranges[proc+1]; i++) sendbuf[k++] = atbarray[i+j*cM]; 2588cb20be35SHong Zhang } 2589cb20be35SHong Zhang } 2590637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(atb->atb,&atbarray);CHKERRQ(ierr); 2591637a0070SStefano Zampini 2592c5ef1628SHong Zhang /* sum all atbarray to local values of C */ 25930acaeb71SStefano Zampini ierr = MatDenseGetArrayWrite(c->A,&carray);CHKERRQ(ierr); 25943462b7efSHong Zhang ierr = MPI_Reduce_scatter(sendbuf,carray,recvcounts,MPIU_SCALAR,MPIU_SUM,comm);CHKERRQ(ierr); 25950acaeb71SStefano Zampini ierr = MatDenseRestoreArrayWrite(c->A,&carray);CHKERRQ(ierr); 25960acaeb71SStefano Zampini ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 25970acaeb71SStefano Zampini ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2598cb20be35SHong Zhang PetscFunctionReturn(0); 2599cb20be35SHong Zhang } 2600cb20be35SHong Zhang 26016718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat C) 2602cb20be35SHong Zhang { 2603cb20be35SHong Zhang PetscErrorCode ierr; 2604cb20be35SHong Zhang MPI_Comm comm; 2605baa3c1c6SHong Zhang PetscMPIInt size; 2606660d5466SHong Zhang PetscInt cm=A->cmap->n,cM,cN=B->cmap->N; 2607baa3c1c6SHong Zhang Mat_TransMatMultDense *atb; 26086718818eSStefano Zampini PetscBool cisdense; 26090acaeb71SStefano Zampini PetscInt i; 26100acaeb71SStefano Zampini const PetscInt *ranges; 2611cb20be35SHong Zhang 2612cb20be35SHong Zhang PetscFunctionBegin; 26136718818eSStefano Zampini MatCheckProduct(C,3); 26146718818eSStefano Zampini if (C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty"); 2615baa3c1c6SHong Zhang ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 2616cb20be35SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) { 2617cb20be35SHong Zhang SETERRQ4(comm,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != B (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 2618cb20be35SHong Zhang } 2619cb20be35SHong Zhang 26204222ddf1SHong Zhang /* create matrix product C */ 26216718818eSStefano Zampini ierr = MatSetSizes(C,cm,B->cmap->n,A->cmap->N,B->cmap->N);CHKERRQ(ierr); 26226718818eSStefano Zampini ierr = PetscObjectTypeCompareAny((PetscObject)C,&cisdense,MATMPIDENSE,MATMPIDENSECUDA,"");CHKERRQ(ierr); 26236718818eSStefano Zampini if (!cisdense) { 26246718818eSStefano Zampini ierr = MatSetType(C,((PetscObject)A)->type_name);CHKERRQ(ierr); 26256718818eSStefano Zampini } 262618992e5dSStefano Zampini ierr = MatSetUp(C);CHKERRQ(ierr); 2627baa3c1c6SHong Zhang 26284222ddf1SHong Zhang /* create data structure for reuse C */ 2629baa3c1c6SHong Zhang ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2630baa3c1c6SHong Zhang ierr = PetscNew(&atb);CHKERRQ(ierr); 26314222ddf1SHong Zhang cM = C->rmap->N; 26326718818eSStefano Zampini ierr = PetscMalloc2((size_t)cM*(size_t)cN,&atb->sendbuf,size,&atb->recvcounts);CHKERRQ(ierr); 26330acaeb71SStefano Zampini ierr = MatGetOwnershipRanges(C,&ranges);CHKERRQ(ierr); 26340acaeb71SStefano Zampini for (i=0; i<size; i++) atb->recvcounts[i] = (ranges[i+1] - ranges[i])*cN; 2635baa3c1c6SHong Zhang 26366718818eSStefano Zampini C->product->data = atb; 26376718818eSStefano Zampini C->product->destroy = MatDestroy_MatTransMatMult_MPIDense_MPIDense; 2638cb20be35SHong Zhang PetscFunctionReturn(0); 2639cb20be35SHong Zhang } 2640cb20be35SHong Zhang 26414222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat A, Mat B, PetscReal fill, Mat C) 2642cb20be35SHong Zhang { 2643cb20be35SHong Zhang PetscErrorCode ierr; 2644cc48ffa7SToby Isaac MPI_Comm comm; 2645cc48ffa7SToby Isaac PetscMPIInt i, size; 2646cc48ffa7SToby Isaac PetscInt maxRows, bufsiz; 2647cc48ffa7SToby Isaac PetscMPIInt tag; 26484222ddf1SHong Zhang PetscInt alg; 2649cc48ffa7SToby Isaac Mat_MatTransMultDense *abt; 26504222ddf1SHong Zhang Mat_Product *product = C->product; 26514222ddf1SHong Zhang PetscBool flg; 2652cc48ffa7SToby Isaac 2653cc48ffa7SToby Isaac PetscFunctionBegin; 26546718818eSStefano Zampini MatCheckProduct(C,4); 26556718818eSStefano Zampini if (C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty"); 26564222ddf1SHong Zhang /* check local size of A and B */ 2657637a0070SStefano Zampini if (A->cmap->n != B->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local column dimensions are incompatible, A (%D) != B (%D)",A->cmap->n,B->cmap->n); 2658cc48ffa7SToby Isaac 26594222ddf1SHong Zhang ierr = PetscStrcmp(product->alg,"allgatherv",&flg);CHKERRQ(ierr); 2660637a0070SStefano Zampini alg = flg ? 0 : 1; 2661cc48ffa7SToby Isaac 26624222ddf1SHong Zhang /* setup matrix product C */ 26634222ddf1SHong Zhang ierr = MatSetSizes(C,A->rmap->n,B->rmap->n,A->rmap->N,B->rmap->N);CHKERRQ(ierr); 26644222ddf1SHong Zhang ierr = MatSetType(C,MATMPIDENSE);CHKERRQ(ierr); 266518992e5dSStefano Zampini ierr = MatSetUp(C);CHKERRQ(ierr); 26664222ddf1SHong Zhang ierr = PetscObjectGetNewTag((PetscObject)C,&tag);CHKERRQ(ierr); 26674222ddf1SHong Zhang 26684222ddf1SHong Zhang /* create data structure for reuse C */ 26694222ddf1SHong Zhang ierr = PetscObjectGetComm((PetscObject)C,&comm);CHKERRQ(ierr); 2670cc48ffa7SToby Isaac ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2671cc48ffa7SToby Isaac ierr = PetscNew(&abt);CHKERRQ(ierr); 2672cc48ffa7SToby Isaac abt->tag = tag; 2673faa55883SToby Isaac abt->alg = alg; 2674faa55883SToby Isaac switch (alg) { 26754222ddf1SHong Zhang case 1: /* alg: "cyclic" */ 2676cc48ffa7SToby Isaac for (maxRows = 0, i = 0; i < size; i++) maxRows = PetscMax(maxRows, (B->rmap->range[i + 1] - B->rmap->range[i])); 2677cc48ffa7SToby Isaac bufsiz = A->cmap->N * maxRows; 2678cc48ffa7SToby Isaac ierr = PetscMalloc2(bufsiz,&(abt->buf[0]),bufsiz,&(abt->buf[1]));CHKERRQ(ierr); 2679faa55883SToby Isaac break; 26804222ddf1SHong Zhang default: /* alg: "allgatherv" */ 2681faa55883SToby Isaac ierr = PetscMalloc2(B->rmap->n * B->cmap->N, &(abt->buf[0]), B->rmap->N * B->cmap->N, &(abt->buf[1]));CHKERRQ(ierr); 2682faa55883SToby Isaac ierr = PetscMalloc2(size,&(abt->recvcounts),size+1,&(abt->recvdispls));CHKERRQ(ierr); 2683faa55883SToby Isaac for (i = 0; i <= size; i++) abt->recvdispls[i] = B->rmap->range[i] * A->cmap->N; 2684faa55883SToby Isaac for (i = 0; i < size; i++) abt->recvcounts[i] = abt->recvdispls[i + 1] - abt->recvdispls[i]; 2685faa55883SToby Isaac break; 2686faa55883SToby Isaac } 2687cc48ffa7SToby Isaac 26886718818eSStefano Zampini C->product->data = abt; 26896718818eSStefano Zampini C->product->destroy = MatDestroy_MatMatTransMult_MPIDense_MPIDense; 26904222ddf1SHong Zhang C->ops->mattransposemultnumeric = MatMatTransposeMultNumeric_MPIDense_MPIDense; 2691cc48ffa7SToby Isaac PetscFunctionReturn(0); 2692cc48ffa7SToby Isaac } 2693cc48ffa7SToby Isaac 2694faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(Mat A, Mat B, Mat C) 2695cc48ffa7SToby Isaac { 2696cc48ffa7SToby Isaac Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 26976718818eSStefano Zampini Mat_MatTransMultDense *abt; 2698cc48ffa7SToby Isaac PetscErrorCode ierr; 2699cc48ffa7SToby Isaac MPI_Comm comm; 2700cc48ffa7SToby Isaac PetscMPIInt rank,size, sendsiz, recvsiz, sendto, recvfrom, recvisfrom; 2701637a0070SStefano Zampini PetscScalar *sendbuf, *recvbuf=0, *cv; 2702cc48ffa7SToby Isaac PetscInt i,cK=A->cmap->N,k,j,bn; 2703cc48ffa7SToby Isaac PetscScalar _DOne=1.0,_DZero=0.0; 2704637a0070SStefano Zampini const PetscScalar *av,*bv; 2705637a0070SStefano Zampini PetscBLASInt cm, cn, ck, alda, blda, clda; 2706cc48ffa7SToby Isaac MPI_Request reqs[2]; 2707cc48ffa7SToby Isaac const PetscInt *ranges; 2708cc48ffa7SToby Isaac 2709cc48ffa7SToby Isaac PetscFunctionBegin; 27106718818eSStefano Zampini MatCheckProduct(C,3); 27116718818eSStefano Zampini if (!C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 27126718818eSStefano Zampini abt = (Mat_MatTransMultDense*)C->product->data; 27136718818eSStefano Zampini ierr = PetscObjectGetComm((PetscObject)C,&comm);CHKERRQ(ierr); 2714cc48ffa7SToby Isaac ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 2715cc48ffa7SToby Isaac ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2716637a0070SStefano Zampini ierr = MatDenseGetArrayRead(a->A,&av);CHKERRQ(ierr); 2717637a0070SStefano Zampini ierr = MatDenseGetArrayRead(b->A,&bv);CHKERRQ(ierr); 27180acaeb71SStefano Zampini ierr = MatDenseGetArrayWrite(c->A,&cv);CHKERRQ(ierr); 2719637a0070SStefano Zampini ierr = MatDenseGetLDA(a->A,&i);CHKERRQ(ierr); 2720637a0070SStefano Zampini ierr = PetscBLASIntCast(i,&alda);CHKERRQ(ierr); 2721637a0070SStefano Zampini ierr = MatDenseGetLDA(b->A,&i);CHKERRQ(ierr); 2722637a0070SStefano Zampini ierr = PetscBLASIntCast(i,&blda);CHKERRQ(ierr); 2723637a0070SStefano Zampini ierr = MatDenseGetLDA(c->A,&i);CHKERRQ(ierr); 2724637a0070SStefano Zampini ierr = PetscBLASIntCast(i,&clda);CHKERRQ(ierr); 2725cc48ffa7SToby Isaac ierr = MatGetOwnershipRanges(B,&ranges);CHKERRQ(ierr); 2726cc48ffa7SToby Isaac bn = B->rmap->n; 2727637a0070SStefano Zampini if (blda == bn) { 2728637a0070SStefano Zampini sendbuf = (PetscScalar*)bv; 2729cc48ffa7SToby Isaac } else { 2730cc48ffa7SToby Isaac sendbuf = abt->buf[0]; 2731cc48ffa7SToby Isaac for (k = 0, i = 0; i < cK; i++) { 2732cc48ffa7SToby Isaac for (j = 0; j < bn; j++, k++) { 2733637a0070SStefano Zampini sendbuf[k] = bv[i * blda + j]; 2734cc48ffa7SToby Isaac } 2735cc48ffa7SToby Isaac } 2736cc48ffa7SToby Isaac } 2737cc48ffa7SToby Isaac if (size > 1) { 2738cc48ffa7SToby Isaac sendto = (rank + size - 1) % size; 2739cc48ffa7SToby Isaac recvfrom = (rank + size + 1) % size; 2740cc48ffa7SToby Isaac } else { 2741cc48ffa7SToby Isaac sendto = recvfrom = 0; 2742cc48ffa7SToby Isaac } 2743cc48ffa7SToby Isaac ierr = PetscBLASIntCast(cK,&ck);CHKERRQ(ierr); 2744cc48ffa7SToby Isaac ierr = PetscBLASIntCast(c->A->rmap->n,&cm);CHKERRQ(ierr); 2745cc48ffa7SToby Isaac recvisfrom = rank; 2746cc48ffa7SToby Isaac for (i = 0; i < size; i++) { 2747cc48ffa7SToby Isaac /* we have finished receiving in sending, bufs can be read/modified */ 2748cc48ffa7SToby Isaac PetscInt nextrecvisfrom = (recvisfrom + 1) % size; /* which process the next recvbuf will originate on */ 2749cc48ffa7SToby Isaac PetscInt nextbn = ranges[nextrecvisfrom + 1] - ranges[nextrecvisfrom]; 2750cc48ffa7SToby Isaac 2751cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2752cc48ffa7SToby Isaac /* start the cyclic sends from sendbuf, to recvbuf (which will switch to sendbuf) */ 2753cc48ffa7SToby Isaac sendsiz = cK * bn; 2754cc48ffa7SToby Isaac recvsiz = cK * nextbn; 2755cc48ffa7SToby Isaac recvbuf = (i & 1) ? abt->buf[0] : abt->buf[1]; 2756cc48ffa7SToby Isaac ierr = MPI_Isend(sendbuf, sendsiz, MPIU_SCALAR, sendto, abt->tag, comm, &reqs[0]);CHKERRQ(ierr); 2757cc48ffa7SToby Isaac ierr = MPI_Irecv(recvbuf, recvsiz, MPIU_SCALAR, recvfrom, abt->tag, comm, &reqs[1]);CHKERRQ(ierr); 2758cc48ffa7SToby Isaac } 2759cc48ffa7SToby Isaac 2760cc48ffa7SToby Isaac /* local aseq * sendbuf^T */ 2761cc48ffa7SToby Isaac ierr = PetscBLASIntCast(ranges[recvisfrom + 1] - ranges[recvisfrom], &cn);CHKERRQ(ierr); 276250ce3c9cSStefano Zampini if (cm && cn && ck) PetscStackCallBLAS("BLASgemm",BLASgemm_("N","T",&cm,&cn,&ck,&_DOne,av,&alda,sendbuf,&cn,&_DZero,cv + clda * ranges[recvisfrom],&clda)); 2763cc48ffa7SToby Isaac 2764cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2765cc48ffa7SToby Isaac /* wait for the sends and receives to complete, swap sendbuf and recvbuf */ 2766cc48ffa7SToby Isaac ierr = MPI_Waitall(2, reqs, MPI_STATUSES_IGNORE);CHKERRQ(ierr); 2767cc48ffa7SToby Isaac } 2768cc48ffa7SToby Isaac bn = nextbn; 2769cc48ffa7SToby Isaac recvisfrom = nextrecvisfrom; 2770cc48ffa7SToby Isaac sendbuf = recvbuf; 2771cc48ffa7SToby Isaac } 2772637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(a->A,&av);CHKERRQ(ierr); 2773637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(b->A,&bv);CHKERRQ(ierr); 27740acaeb71SStefano Zampini ierr = MatDenseRestoreArrayWrite(c->A,&cv);CHKERRQ(ierr); 27750acaeb71SStefano Zampini ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 27760acaeb71SStefano Zampini ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2777cc48ffa7SToby Isaac PetscFunctionReturn(0); 2778cc48ffa7SToby Isaac } 2779cc48ffa7SToby Isaac 2780faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(Mat A, Mat B, Mat C) 2781faa55883SToby Isaac { 2782faa55883SToby Isaac Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 27836718818eSStefano Zampini Mat_MatTransMultDense *abt; 2784faa55883SToby Isaac PetscErrorCode ierr; 2785faa55883SToby Isaac MPI_Comm comm; 2786637a0070SStefano Zampini PetscMPIInt size; 2787637a0070SStefano Zampini PetscScalar *cv, *sendbuf, *recvbuf; 2788637a0070SStefano Zampini const PetscScalar *av,*bv; 2789637a0070SStefano Zampini PetscInt blda,i,cK=A->cmap->N,k,j,bn; 2790faa55883SToby Isaac PetscScalar _DOne=1.0,_DZero=0.0; 2791637a0070SStefano Zampini PetscBLASInt cm, cn, ck, alda, clda; 2792faa55883SToby Isaac 2793faa55883SToby Isaac PetscFunctionBegin; 27946718818eSStefano Zampini MatCheckProduct(C,3); 27956718818eSStefano Zampini if (!C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 27966718818eSStefano Zampini abt = (Mat_MatTransMultDense*)C->product->data; 2797faa55883SToby Isaac ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 2798faa55883SToby Isaac ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2799637a0070SStefano Zampini ierr = MatDenseGetArrayRead(a->A,&av);CHKERRQ(ierr); 2800637a0070SStefano Zampini ierr = MatDenseGetArrayRead(b->A,&bv);CHKERRQ(ierr); 28010acaeb71SStefano Zampini ierr = MatDenseGetArrayWrite(c->A,&cv);CHKERRQ(ierr); 2802637a0070SStefano Zampini ierr = MatDenseGetLDA(a->A,&i);CHKERRQ(ierr); 2803637a0070SStefano Zampini ierr = PetscBLASIntCast(i,&alda);CHKERRQ(ierr); 2804637a0070SStefano Zampini ierr = MatDenseGetLDA(b->A,&blda);CHKERRQ(ierr); 2805637a0070SStefano Zampini ierr = MatDenseGetLDA(c->A,&i);CHKERRQ(ierr); 2806637a0070SStefano Zampini ierr = PetscBLASIntCast(i,&clda);CHKERRQ(ierr); 2807faa55883SToby Isaac /* copy transpose of B into buf[0] */ 2808faa55883SToby Isaac bn = B->rmap->n; 2809faa55883SToby Isaac sendbuf = abt->buf[0]; 2810faa55883SToby Isaac recvbuf = abt->buf[1]; 2811faa55883SToby Isaac for (k = 0, j = 0; j < bn; j++) { 2812faa55883SToby Isaac for (i = 0; i < cK; i++, k++) { 2813637a0070SStefano Zampini sendbuf[k] = bv[i * blda + j]; 2814faa55883SToby Isaac } 2815faa55883SToby Isaac } 2816637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(b->A,&bv);CHKERRQ(ierr); 2817faa55883SToby Isaac ierr = MPI_Allgatherv(sendbuf, bn * cK, MPIU_SCALAR, recvbuf, abt->recvcounts, abt->recvdispls, MPIU_SCALAR, comm);CHKERRQ(ierr); 2818faa55883SToby Isaac ierr = PetscBLASIntCast(cK,&ck);CHKERRQ(ierr); 2819faa55883SToby Isaac ierr = PetscBLASIntCast(c->A->rmap->n,&cm);CHKERRQ(ierr); 2820faa55883SToby Isaac ierr = PetscBLASIntCast(c->A->cmap->n,&cn);CHKERRQ(ierr); 282150ce3c9cSStefano Zampini if (cm && cn && ck) PetscStackCallBLAS("BLASgemm",BLASgemm_("N","N",&cm,&cn,&ck,&_DOne,av,&alda,recvbuf,&ck,&_DZero,cv,&clda)); 2822637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(a->A,&av);CHKERRQ(ierr); 2823637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(b->A,&bv);CHKERRQ(ierr); 28240acaeb71SStefano Zampini ierr = MatDenseRestoreArrayWrite(c->A,&cv);CHKERRQ(ierr); 28250acaeb71SStefano Zampini ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 28260acaeb71SStefano Zampini ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2827faa55883SToby Isaac PetscFunctionReturn(0); 2828faa55883SToby Isaac } 2829faa55883SToby Isaac 2830faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat A, Mat B, Mat C) 2831faa55883SToby Isaac { 28326718818eSStefano Zampini Mat_MatTransMultDense *abt; 2833faa55883SToby Isaac PetscErrorCode ierr; 2834faa55883SToby Isaac 2835faa55883SToby Isaac PetscFunctionBegin; 28366718818eSStefano Zampini MatCheckProduct(C,3); 28376718818eSStefano Zampini if (!C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 28386718818eSStefano Zampini abt = (Mat_MatTransMultDense*)C->product->data; 2839faa55883SToby Isaac switch (abt->alg) { 2840faa55883SToby Isaac case 1: 2841faa55883SToby Isaac ierr = MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(A, B, C);CHKERRQ(ierr); 2842faa55883SToby Isaac break; 2843faa55883SToby Isaac default: 2844faa55883SToby Isaac ierr = MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(A, B, C);CHKERRQ(ierr); 2845faa55883SToby Isaac break; 2846faa55883SToby Isaac } 2847faa55883SToby Isaac PetscFunctionReturn(0); 2848faa55883SToby Isaac } 2849faa55883SToby Isaac 28506718818eSStefano Zampini PetscErrorCode MatDestroy_MatMatMult_MPIDense_MPIDense(void *data) 2851320f2790SHong Zhang { 2852320f2790SHong Zhang PetscErrorCode ierr; 28536718818eSStefano Zampini Mat_MatMultDense *ab = (Mat_MatMultDense*)data; 2854320f2790SHong Zhang 2855320f2790SHong Zhang PetscFunctionBegin; 2856320f2790SHong Zhang ierr = MatDestroy(&ab->Ce);CHKERRQ(ierr); 2857320f2790SHong Zhang ierr = MatDestroy(&ab->Ae);CHKERRQ(ierr); 2858320f2790SHong Zhang ierr = MatDestroy(&ab->Be);CHKERRQ(ierr); 2859320f2790SHong Zhang ierr = PetscFree(ab);CHKERRQ(ierr); 2860320f2790SHong Zhang PetscFunctionReturn(0); 2861320f2790SHong Zhang } 2862320f2790SHong Zhang 28635242a7b1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 2864320f2790SHong Zhang PetscErrorCode MatMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 2865320f2790SHong Zhang { 2866320f2790SHong Zhang PetscErrorCode ierr; 28676718818eSStefano Zampini Mat_MatMultDense *ab; 2868320f2790SHong Zhang 2869320f2790SHong Zhang PetscFunctionBegin; 28706718818eSStefano Zampini MatCheckProduct(C,3); 28716718818eSStefano Zampini if (!C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Missing product data"); 28726718818eSStefano Zampini ab = (Mat_MatMultDense*)C->product->data; 2873de0a22f0SHong Zhang ierr = MatConvert_MPIDense_Elemental(A,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Ae);CHKERRQ(ierr); 2874de0a22f0SHong Zhang ierr = MatConvert_MPIDense_Elemental(B,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Be);CHKERRQ(ierr); 28754222ddf1SHong Zhang ierr = MatMatMultNumeric_Elemental(ab->Ae,ab->Be,ab->Ce);CHKERRQ(ierr); 2876de0a22f0SHong Zhang ierr = MatConvert(ab->Ce,MATMPIDENSE,MAT_REUSE_MATRIX,&C);CHKERRQ(ierr); 2877320f2790SHong Zhang PetscFunctionReturn(0); 2878320f2790SHong Zhang } 2879320f2790SHong Zhang 28806718818eSStefano Zampini static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat C) 2881320f2790SHong Zhang { 2882320f2790SHong Zhang PetscErrorCode ierr; 2883320f2790SHong Zhang Mat Ae,Be,Ce; 2884320f2790SHong Zhang Mat_MatMultDense *ab; 2885320f2790SHong Zhang 2886320f2790SHong Zhang PetscFunctionBegin; 28876718818eSStefano Zampini MatCheckProduct(C,4); 28886718818eSStefano Zampini if (C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty"); 28894222ddf1SHong Zhang /* check local size of A and B */ 2890320f2790SHong Zhang if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend) { 2891378336b6SHong Zhang SETERRQ4(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != B (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 2892320f2790SHong Zhang } 2893320f2790SHong Zhang 28944222ddf1SHong Zhang /* create elemental matrices Ae and Be */ 28954222ddf1SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)A), &Ae);CHKERRQ(ierr); 28964222ddf1SHong Zhang ierr = MatSetSizes(Ae,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 28974222ddf1SHong Zhang ierr = MatSetType(Ae,MATELEMENTAL);CHKERRQ(ierr); 28984222ddf1SHong Zhang ierr = MatSetUp(Ae);CHKERRQ(ierr); 28994222ddf1SHong Zhang ierr = MatSetOption(Ae,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 2900320f2790SHong Zhang 29014222ddf1SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)B), &Be);CHKERRQ(ierr); 29024222ddf1SHong Zhang ierr = MatSetSizes(Be,PETSC_DECIDE,PETSC_DECIDE,B->rmap->N,B->cmap->N);CHKERRQ(ierr); 29034222ddf1SHong Zhang ierr = MatSetType(Be,MATELEMENTAL);CHKERRQ(ierr); 29044222ddf1SHong Zhang ierr = MatSetUp(Be);CHKERRQ(ierr); 29054222ddf1SHong Zhang ierr = MatSetOption(Be,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 2906320f2790SHong Zhang 29074222ddf1SHong Zhang /* compute symbolic Ce = Ae*Be */ 29084222ddf1SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)C),&Ce);CHKERRQ(ierr); 29094222ddf1SHong Zhang ierr = MatMatMultSymbolic_Elemental(Ae,Be,fill,Ce);CHKERRQ(ierr); 29104222ddf1SHong Zhang 29114222ddf1SHong Zhang /* setup C */ 29124222ddf1SHong Zhang ierr = MatSetSizes(C,A->rmap->n,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 29134222ddf1SHong Zhang ierr = MatSetType(C,MATDENSE);CHKERRQ(ierr); 29144222ddf1SHong Zhang ierr = MatSetUp(C);CHKERRQ(ierr); 2915320f2790SHong Zhang 2916320f2790SHong Zhang /* create data structure for reuse Cdense */ 2917320f2790SHong Zhang ierr = PetscNew(&ab);CHKERRQ(ierr); 2918320f2790SHong Zhang ab->Ae = Ae; 2919320f2790SHong Zhang ab->Be = Be; 2920320f2790SHong Zhang ab->Ce = Ce; 29216718818eSStefano Zampini 29226718818eSStefano Zampini C->product->data = ab; 29236718818eSStefano Zampini C->product->destroy = MatDestroy_MatMatMult_MPIDense_MPIDense; 29244222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIDense; 2925320f2790SHong Zhang PetscFunctionReturn(0); 2926320f2790SHong Zhang } 29274222ddf1SHong Zhang #endif 29284222ddf1SHong Zhang /* ----------------------------------------------- */ 29294222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 29304222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_AB(Mat C) 2931320f2790SHong Zhang { 2932320f2790SHong Zhang PetscFunctionBegin; 29334222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIDense; 29344222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 2935320f2790SHong Zhang PetscFunctionReturn(0); 2936320f2790SHong Zhang } 29375242a7b1SHong Zhang #endif 293886aefd0dSHong Zhang 29394222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_AtB(Mat C) 29404222ddf1SHong Zhang { 29414222ddf1SHong Zhang Mat_Product *product = C->product; 29424222ddf1SHong Zhang Mat A = product->A,B=product->B; 29434222ddf1SHong Zhang 29444222ddf1SHong Zhang PetscFunctionBegin; 29454222ddf1SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) 29464222ddf1SHong Zhang SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, (%D, %D) != (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 29476718818eSStefano Zampini C->ops->transposematmultsymbolic = MatTransposeMatMultSymbolic_MPIDense_MPIDense; 29486718818eSStefano Zampini C->ops->productsymbolic = MatProductSymbolic_AtB; 29494222ddf1SHong Zhang PetscFunctionReturn(0); 29504222ddf1SHong Zhang } 29514222ddf1SHong Zhang 29524222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_ABt(Mat C) 29534222ddf1SHong Zhang { 29544222ddf1SHong Zhang PetscErrorCode ierr; 29554222ddf1SHong Zhang Mat_Product *product = C->product; 29564222ddf1SHong Zhang const char *algTypes[2] = {"allgatherv","cyclic"}; 29574222ddf1SHong Zhang PetscInt alg,nalg = 2; 29584222ddf1SHong Zhang PetscBool flg = PETSC_FALSE; 29594222ddf1SHong Zhang 29604222ddf1SHong Zhang PetscFunctionBegin; 29614222ddf1SHong Zhang /* Set default algorithm */ 29624222ddf1SHong Zhang alg = 0; /* default is allgatherv */ 29634222ddf1SHong Zhang ierr = PetscStrcmp(product->alg,"default",&flg);CHKERRQ(ierr); 29644222ddf1SHong Zhang if (flg) { 29654222ddf1SHong Zhang ierr = MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]);CHKERRQ(ierr); 29664222ddf1SHong Zhang } 29674222ddf1SHong Zhang 29684222ddf1SHong Zhang /* Get runtime option */ 29694222ddf1SHong Zhang if (product->api_user) { 29704222ddf1SHong Zhang ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatMatTransposeMult","Mat");CHKERRQ(ierr); 29714222ddf1SHong Zhang ierr = PetscOptionsEList("-matmattransmult_mpidense_mpidense_via","Algorithmic approach","MatMatTransposeMult",algTypes,nalg,algTypes[alg],&alg,&flg);CHKERRQ(ierr); 29724222ddf1SHong Zhang ierr = PetscOptionsEnd();CHKERRQ(ierr); 29734222ddf1SHong Zhang } else { 29744222ddf1SHong Zhang ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatProduct_ABt","Mat");CHKERRQ(ierr); 29754222ddf1SHong Zhang ierr = PetscOptionsEList("-matproduct_abt_mpidense_mpidense_via","Algorithmic approach","MatProduct_ABt",algTypes,nalg,algTypes[alg],&alg,&flg);CHKERRQ(ierr); 29764222ddf1SHong Zhang ierr = PetscOptionsEnd();CHKERRQ(ierr); 29774222ddf1SHong Zhang } 29784222ddf1SHong Zhang if (flg) { 29794222ddf1SHong Zhang ierr = MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]);CHKERRQ(ierr); 29804222ddf1SHong Zhang } 29814222ddf1SHong Zhang 29824222ddf1SHong Zhang C->ops->mattransposemultsymbolic = MatMatTransposeMultSymbolic_MPIDense_MPIDense; 29834222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_ABt; 29844222ddf1SHong Zhang PetscFunctionReturn(0); 29854222ddf1SHong Zhang } 29864222ddf1SHong Zhang 29874222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense(Mat C) 29884222ddf1SHong Zhang { 29894222ddf1SHong Zhang PetscErrorCode ierr; 29904222ddf1SHong Zhang Mat_Product *product = C->product; 29914222ddf1SHong Zhang 29924222ddf1SHong Zhang PetscFunctionBegin; 29934222ddf1SHong Zhang switch (product->type) { 29944222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 29954222ddf1SHong Zhang case MATPRODUCT_AB: 29964222ddf1SHong Zhang ierr = MatProductSetFromOptions_MPIDense_AB(C);CHKERRQ(ierr); 29974222ddf1SHong Zhang break; 29984222ddf1SHong Zhang #endif 29994222ddf1SHong Zhang case MATPRODUCT_AtB: 30004222ddf1SHong Zhang ierr = MatProductSetFromOptions_MPIDense_AtB(C);CHKERRQ(ierr); 30014222ddf1SHong Zhang break; 30024222ddf1SHong Zhang case MATPRODUCT_ABt: 30034222ddf1SHong Zhang ierr = MatProductSetFromOptions_MPIDense_ABt(C);CHKERRQ(ierr); 30044222ddf1SHong Zhang break; 30056718818eSStefano Zampini default: 30066718818eSStefano Zampini break; 30074222ddf1SHong Zhang } 30084222ddf1SHong Zhang PetscFunctionReturn(0); 30094222ddf1SHong Zhang } 3010