1be1d678aSKris Buschelman 2ed3cc1f0SBarry Smith /* 3ed3cc1f0SBarry Smith Basic functions for basic parallel dense matrices. 4ed3cc1f0SBarry Smith */ 5ed3cc1f0SBarry Smith 6c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h> /*I "petscmat.h" I*/ 78949adfdSHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 8baa3c1c6SHong Zhang #include <petscblaslapack.h> 98965ea79SLois Curfman McInnes 10ab92ecdeSBarry Smith /*@ 11ab92ecdeSBarry Smith 12ab92ecdeSBarry Smith MatDenseGetLocalMatrix - For a MATMPIDENSE or MATSEQDENSE matrix returns the sequential 13ab92ecdeSBarry Smith matrix that represents the operator. For sequential matrices it returns itself. 14ab92ecdeSBarry Smith 15ab92ecdeSBarry Smith Input Parameter: 16ab92ecdeSBarry Smith . A - the Seq or MPI dense matrix 17ab92ecdeSBarry Smith 18ab92ecdeSBarry Smith Output Parameter: 19ab92ecdeSBarry Smith . B - the inner matrix 20ab92ecdeSBarry Smith 218e6c10adSSatish Balay Level: intermediate 228e6c10adSSatish Balay 23ab92ecdeSBarry Smith @*/ 24ab92ecdeSBarry Smith PetscErrorCode MatDenseGetLocalMatrix(Mat A,Mat *B) 25ab92ecdeSBarry Smith { 26ab92ecdeSBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 27ab92ecdeSBarry Smith PetscErrorCode ierr; 28ace3abfcSBarry Smith PetscBool flg; 29ab92ecdeSBarry Smith 30ab92ecdeSBarry Smith PetscFunctionBegin; 31251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIDENSE,&flg);CHKERRQ(ierr); 322205254eSKarl Rupp if (flg) *B = mat->A; 332205254eSKarl Rupp else *B = A; 34ab92ecdeSBarry Smith PetscFunctionReturn(0); 35ab92ecdeSBarry Smith } 36ab92ecdeSBarry Smith 37ba8c8a56SBarry Smith PetscErrorCode MatGetRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 38ba8c8a56SBarry Smith { 39ba8c8a56SBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 40ba8c8a56SBarry Smith PetscErrorCode ierr; 41d0f46423SBarry Smith PetscInt lrow,rstart = A->rmap->rstart,rend = A->rmap->rend; 42ba8c8a56SBarry Smith 43ba8c8a56SBarry Smith PetscFunctionBegin; 44e7e72b3dSBarry Smith if (row < rstart || row >= rend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows"); 45ba8c8a56SBarry Smith lrow = row - rstart; 46ba8c8a56SBarry Smith ierr = MatGetRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v);CHKERRQ(ierr); 47ba8c8a56SBarry Smith PetscFunctionReturn(0); 48ba8c8a56SBarry Smith } 49ba8c8a56SBarry Smith 50ba8c8a56SBarry Smith PetscErrorCode MatRestoreRow_MPIDense(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 51ba8c8a56SBarry Smith { 52ba8c8a56SBarry Smith PetscErrorCode ierr; 53ba8c8a56SBarry Smith 54ba8c8a56SBarry Smith PetscFunctionBegin; 55ba8c8a56SBarry Smith if (idx) {ierr = PetscFree(*idx);CHKERRQ(ierr);} 56ba8c8a56SBarry Smith if (v) {ierr = PetscFree(*v);CHKERRQ(ierr);} 57ba8c8a56SBarry Smith PetscFunctionReturn(0); 58ba8c8a56SBarry Smith } 59ba8c8a56SBarry Smith 6011bd1e4dSLisandro Dalcin PetscErrorCode MatGetDiagonalBlock_MPIDense(Mat A,Mat *a) 610de54da6SSatish Balay { 620de54da6SSatish Balay Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 636849ba73SBarry Smith PetscErrorCode ierr; 64d0f46423SBarry Smith PetscInt m = A->rmap->n,rstart = A->rmap->rstart; 6587828ca2SBarry Smith PetscScalar *array; 660de54da6SSatish Balay MPI_Comm comm; 6711bd1e4dSLisandro Dalcin Mat B; 680de54da6SSatish Balay 690de54da6SSatish Balay PetscFunctionBegin; 70e32f2f54SBarry Smith if (A->rmap->N != A->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only square matrices supported."); 710de54da6SSatish Balay 7211bd1e4dSLisandro Dalcin ierr = PetscObjectQuery((PetscObject)A,"DiagonalBlock",(PetscObject*)&B);CHKERRQ(ierr); 7311bd1e4dSLisandro Dalcin if (!B) { 740de54da6SSatish Balay ierr = PetscObjectGetComm((PetscObject)(mdn->A),&comm);CHKERRQ(ierr); 7511bd1e4dSLisandro Dalcin ierr = MatCreate(comm,&B);CHKERRQ(ierr); 7611bd1e4dSLisandro Dalcin ierr = MatSetSizes(B,m,m,m,m);CHKERRQ(ierr); 7711bd1e4dSLisandro Dalcin ierr = MatSetType(B,((PetscObject)mdn->A)->type_name);CHKERRQ(ierr); 788c778c55SBarry Smith ierr = MatDenseGetArray(mdn->A,&array);CHKERRQ(ierr); 7911bd1e4dSLisandro Dalcin ierr = MatSeqDenseSetPreallocation(B,array+m*rstart);CHKERRQ(ierr); 808c778c55SBarry Smith ierr = MatDenseRestoreArray(mdn->A,&array);CHKERRQ(ierr); 8111bd1e4dSLisandro Dalcin ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 8211bd1e4dSLisandro Dalcin ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 8311bd1e4dSLisandro Dalcin ierr = PetscObjectCompose((PetscObject)A,"DiagonalBlock",(PetscObject)B);CHKERRQ(ierr); 8411bd1e4dSLisandro Dalcin *a = B; 8511bd1e4dSLisandro Dalcin ierr = MatDestroy(&B);CHKERRQ(ierr); 862205254eSKarl Rupp } else *a = B; 870de54da6SSatish Balay PetscFunctionReturn(0); 880de54da6SSatish Balay } 890de54da6SSatish Balay 9013f74950SBarry Smith PetscErrorCode MatSetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],const PetscScalar v[],InsertMode addv) 918965ea79SLois Curfman McInnes { 9239b7565bSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)mat->data; 93dfbe8321SBarry Smith PetscErrorCode ierr; 94d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 95ace3abfcSBarry Smith PetscBool roworiented = A->roworiented; 968965ea79SLois Curfman McInnes 973a40ed3dSBarry Smith PetscFunctionBegin; 988965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 995ef9f2a5SBarry Smith if (idxm[i] < 0) continue; 100e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 1018965ea79SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 1028965ea79SLois Curfman McInnes row = idxm[i] - rstart; 10339b7565bSBarry Smith if (roworiented) { 10439b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv);CHKERRQ(ierr); 1053a40ed3dSBarry Smith } else { 1068965ea79SLois Curfman McInnes for (j=0; j<n; j++) { 1075ef9f2a5SBarry Smith if (idxn[j] < 0) continue; 108e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 10939b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv);CHKERRQ(ierr); 11039b7565bSBarry Smith } 1118965ea79SLois Curfman McInnes } 1122205254eSKarl Rupp } else if (!A->donotstash) { 1135080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 11439b7565bSBarry Smith if (roworiented) { 115b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,idxm[i],n,idxn,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 116d36fbae8SSatish Balay } else { 117b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,idxm[i],n,idxn,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 11839b7565bSBarry Smith } 119b49de8d1SLois Curfman McInnes } 120b49de8d1SLois Curfman McInnes } 1213a40ed3dSBarry Smith PetscFunctionReturn(0); 122b49de8d1SLois Curfman McInnes } 123b49de8d1SLois Curfman McInnes 12413f74950SBarry Smith PetscErrorCode MatGetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 125b49de8d1SLois Curfman McInnes { 126b49de8d1SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 127dfbe8321SBarry Smith PetscErrorCode ierr; 128d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 129b49de8d1SLois Curfman McInnes 1303a40ed3dSBarry Smith PetscFunctionBegin; 131b49de8d1SLois Curfman McInnes for (i=0; i<m; i++) { 132e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); */ 133e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 134b49de8d1SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 135b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 136b49de8d1SLois Curfman McInnes for (j=0; j<n; j++) { 137e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); */ 138e7e72b3dSBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 139b49de8d1SLois Curfman McInnes ierr = MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j);CHKERRQ(ierr); 140b49de8d1SLois Curfman McInnes } 141e7e72b3dSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 1428965ea79SLois Curfman McInnes } 1433a40ed3dSBarry Smith PetscFunctionReturn(0); 1448965ea79SLois Curfman McInnes } 1458965ea79SLois Curfman McInnes 14649a6ff4bSBarry Smith static PetscErrorCode MatDenseGetLDA_MPIDense(Mat A,PetscInt *lda) 14749a6ff4bSBarry Smith { 14849a6ff4bSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 14949a6ff4bSBarry Smith PetscErrorCode ierr; 15049a6ff4bSBarry Smith 15149a6ff4bSBarry Smith PetscFunctionBegin; 15249a6ff4bSBarry Smith ierr = MatDenseGetLDA(a->A,lda);CHKERRQ(ierr); 15349a6ff4bSBarry Smith PetscFunctionReturn(0); 15449a6ff4bSBarry Smith } 15549a6ff4bSBarry Smith 156d3042a70SBarry Smith static PetscErrorCode MatDenseGetArray_MPIDense(Mat A,PetscScalar *array[]) 157ff14e315SSatish Balay { 158ff14e315SSatish Balay Mat_MPIDense *a = (Mat_MPIDense*)A->data; 159dfbe8321SBarry Smith PetscErrorCode ierr; 160ff14e315SSatish Balay 1613a40ed3dSBarry Smith PetscFunctionBegin; 1628c778c55SBarry Smith ierr = MatDenseGetArray(a->A,array);CHKERRQ(ierr); 1633a40ed3dSBarry Smith PetscFunctionReturn(0); 164ff14e315SSatish Balay } 165ff14e315SSatish Balay 1668572280aSBarry Smith static PetscErrorCode MatDenseGetArrayRead_MPIDense(Mat A,const PetscScalar *array[]) 1678572280aSBarry Smith { 1688572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1698572280aSBarry Smith PetscErrorCode ierr; 1708572280aSBarry Smith 1718572280aSBarry Smith PetscFunctionBegin; 1728572280aSBarry Smith ierr = MatDenseGetArrayRead(a->A,array);CHKERRQ(ierr); 1738572280aSBarry Smith PetscFunctionReturn(0); 1748572280aSBarry Smith } 1758572280aSBarry Smith 176d3042a70SBarry Smith static PetscErrorCode MatDensePlaceArray_MPIDense(Mat A,const PetscScalar array[]) 177d3042a70SBarry Smith { 178d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 179d3042a70SBarry Smith PetscErrorCode ierr; 180d3042a70SBarry Smith 181d3042a70SBarry Smith PetscFunctionBegin; 182d3042a70SBarry Smith ierr = MatDensePlaceArray(a->A,array);CHKERRQ(ierr); 183d3042a70SBarry Smith PetscFunctionReturn(0); 184d3042a70SBarry Smith } 185d3042a70SBarry Smith 186d3042a70SBarry Smith static PetscErrorCode MatDenseResetArray_MPIDense(Mat A) 187d3042a70SBarry Smith { 188d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 189d3042a70SBarry Smith PetscErrorCode ierr; 190d3042a70SBarry Smith 191d3042a70SBarry Smith PetscFunctionBegin; 192d3042a70SBarry Smith ierr = MatDenseResetArray(a->A);CHKERRQ(ierr); 193d3042a70SBarry Smith PetscFunctionReturn(0); 194d3042a70SBarry Smith } 195d3042a70SBarry Smith 1967dae84e0SHong Zhang static PetscErrorCode MatCreateSubMatrix_MPIDense(Mat A,IS isrow,IS iscol,MatReuse scall,Mat *B) 197ca3fa75bSLois Curfman McInnes { 198ca3fa75bSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data,*newmatd; 199ca3fa75bSLois Curfman McInnes Mat_SeqDense *lmat = (Mat_SeqDense*)mat->A->data; 2006849ba73SBarry Smith PetscErrorCode ierr; 2014aa3045dSJed Brown PetscInt i,j,rstart,rend,nrows,ncols,Ncols,nlrows,nlcols; 2025d0c19d7SBarry Smith const PetscInt *irow,*icol; 20387828ca2SBarry Smith PetscScalar *av,*bv,*v = lmat->v; 204ca3fa75bSLois Curfman McInnes Mat newmat; 2054aa3045dSJed Brown IS iscol_local; 20642a884f0SBarry Smith MPI_Comm comm_is,comm_mat; 207ca3fa75bSLois Curfman McInnes 208ca3fa75bSLois Curfman McInnes PetscFunctionBegin; 20942a884f0SBarry Smith ierr = PetscObjectGetComm((PetscObject)A,&comm_mat);CHKERRQ(ierr); 21042a884f0SBarry Smith ierr = PetscObjectGetComm((PetscObject)iscol,&comm_is);CHKERRQ(ierr); 21142a884f0SBarry Smith if (comm_mat != comm_is) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NOTSAMECOMM,"IS communicator must match matrix communicator"); 21242a884f0SBarry Smith 2134aa3045dSJed Brown ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 214ca3fa75bSLois Curfman McInnes ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr); 2154aa3045dSJed Brown ierr = ISGetIndices(iscol_local,&icol);CHKERRQ(ierr); 216b9b97703SBarry Smith ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr); 217b9b97703SBarry Smith ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr); 2184aa3045dSJed Brown ierr = ISGetSize(iscol,&Ncols);CHKERRQ(ierr); /* global number of columns, size of iscol_local */ 219ca3fa75bSLois Curfman McInnes 220ca3fa75bSLois Curfman McInnes /* No parallel redistribution currently supported! Should really check each index set 2217eba5e9cSLois Curfman McInnes to comfirm that it is OK. ... Currently supports only submatrix same partitioning as 2227eba5e9cSLois Curfman McInnes original matrix! */ 223ca3fa75bSLois Curfman McInnes 224ca3fa75bSLois Curfman McInnes ierr = MatGetLocalSize(A,&nlrows,&nlcols);CHKERRQ(ierr); 2257eba5e9cSLois Curfman McInnes ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr); 226ca3fa75bSLois Curfman McInnes 227ca3fa75bSLois Curfman McInnes /* Check submatrix call */ 228ca3fa75bSLois Curfman McInnes if (scall == MAT_REUSE_MATRIX) { 229e32f2f54SBarry Smith /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */ 2307eba5e9cSLois Curfman McInnes /* Really need to test rows and column sizes! */ 231ca3fa75bSLois Curfman McInnes newmat = *B; 232ca3fa75bSLois Curfman McInnes } else { 233ca3fa75bSLois Curfman McInnes /* Create and fill new matrix */ 234ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&newmat);CHKERRQ(ierr); 2354aa3045dSJed Brown ierr = MatSetSizes(newmat,nrows,ncols,PETSC_DECIDE,Ncols);CHKERRQ(ierr); 2367adad957SLisandro Dalcin ierr = MatSetType(newmat,((PetscObject)A)->type_name);CHKERRQ(ierr); 2370298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr); 238ca3fa75bSLois Curfman McInnes } 239ca3fa75bSLois Curfman McInnes 240ca3fa75bSLois Curfman McInnes /* Now extract the data pointers and do the copy, column at a time */ 241ca3fa75bSLois Curfman McInnes newmatd = (Mat_MPIDense*)newmat->data; 242ca3fa75bSLois Curfman McInnes bv = ((Mat_SeqDense*)newmatd->A->data)->v; 243ca3fa75bSLois Curfman McInnes 2444aa3045dSJed Brown for (i=0; i<Ncols; i++) { 24525a33276SHong Zhang av = v + ((Mat_SeqDense*)mat->A->data)->lda*icol[i]; 246ca3fa75bSLois Curfman McInnes for (j=0; j<nrows; j++) { 2477eba5e9cSLois Curfman McInnes *bv++ = av[irow[j] - rstart]; 248ca3fa75bSLois Curfman McInnes } 249ca3fa75bSLois Curfman McInnes } 250ca3fa75bSLois Curfman McInnes 251ca3fa75bSLois Curfman McInnes /* Assemble the matrices so that the correct flags are set */ 252ca3fa75bSLois Curfman McInnes ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 253ca3fa75bSLois Curfman McInnes ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 254ca3fa75bSLois Curfman McInnes 255ca3fa75bSLois Curfman McInnes /* Free work space */ 256ca3fa75bSLois Curfman McInnes ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr); 2575bdf786aSShri Abhyankar ierr = ISRestoreIndices(iscol_local,&icol);CHKERRQ(ierr); 25832bb1f2dSLisandro Dalcin ierr = ISDestroy(&iscol_local);CHKERRQ(ierr); 259ca3fa75bSLois Curfman McInnes *B = newmat; 260ca3fa75bSLois Curfman McInnes PetscFunctionReturn(0); 261ca3fa75bSLois Curfman McInnes } 262ca3fa75bSLois Curfman McInnes 2638c778c55SBarry Smith PetscErrorCode MatDenseRestoreArray_MPIDense(Mat A,PetscScalar *array[]) 264ff14e315SSatish Balay { 26573a71a0fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 26673a71a0fSBarry Smith PetscErrorCode ierr; 26773a71a0fSBarry Smith 2683a40ed3dSBarry Smith PetscFunctionBegin; 2698c778c55SBarry Smith ierr = MatDenseRestoreArray(a->A,array);CHKERRQ(ierr); 2703a40ed3dSBarry Smith PetscFunctionReturn(0); 271ff14e315SSatish Balay } 272ff14e315SSatish Balay 2738572280aSBarry Smith PetscErrorCode MatDenseRestoreArrayRead_MPIDense(Mat A,const PetscScalar *array[]) 2748572280aSBarry Smith { 2758572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 2768572280aSBarry Smith PetscErrorCode ierr; 2778572280aSBarry Smith 2788572280aSBarry Smith PetscFunctionBegin; 2798572280aSBarry Smith ierr = MatDenseRestoreArrayRead(a->A,array);CHKERRQ(ierr); 2808572280aSBarry Smith PetscFunctionReturn(0); 2818572280aSBarry Smith } 2828572280aSBarry Smith 283dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode) 2848965ea79SLois Curfman McInnes { 28539ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 286ce94432eSBarry Smith MPI_Comm comm; 287dfbe8321SBarry Smith PetscErrorCode ierr; 28813f74950SBarry Smith PetscInt nstash,reallocs; 2898965ea79SLois Curfman McInnes InsertMode addv; 2908965ea79SLois Curfman McInnes 2913a40ed3dSBarry Smith PetscFunctionBegin; 292ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)mat,&comm);CHKERRQ(ierr); 2938965ea79SLois Curfman McInnes /* make sure all processors are either in INSERTMODE or ADDMODE */ 294b2566f29SBarry Smith ierr = MPIU_Allreduce((PetscEnum*)&mat->insertmode,(PetscEnum*)&addv,1,MPIU_ENUM,MPI_BOR,comm);CHKERRQ(ierr); 295ce94432eSBarry Smith if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ARG_WRONGSTATE,"Cannot mix adds/inserts on different procs"); 296e0fa3b82SLois Curfman McInnes mat->insertmode = addv; /* in case this processor had no cache */ 2978965ea79SLois Curfman McInnes 298d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 2998798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 300ae15b995SBarry Smith ierr = PetscInfo2(mdn->A,"Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 3013a40ed3dSBarry Smith PetscFunctionReturn(0); 3028965ea79SLois Curfman McInnes } 3038965ea79SLois Curfman McInnes 304dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode) 3058965ea79SLois Curfman McInnes { 30639ddd567SLois Curfman McInnes Mat_MPIDense *mdn=(Mat_MPIDense*)mat->data; 3076849ba73SBarry Smith PetscErrorCode ierr; 30813f74950SBarry Smith PetscInt i,*row,*col,flg,j,rstart,ncols; 30913f74950SBarry Smith PetscMPIInt n; 31087828ca2SBarry Smith PetscScalar *val; 3118965ea79SLois Curfman McInnes 3123a40ed3dSBarry Smith PetscFunctionBegin; 3138965ea79SLois Curfman McInnes /* wait on receives */ 3147ef1d9bdSSatish Balay while (1) { 3158798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 3167ef1d9bdSSatish Balay if (!flg) break; 3178965ea79SLois Curfman McInnes 3187ef1d9bdSSatish Balay for (i=0; i<n;) { 3197ef1d9bdSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 3202205254eSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 3212205254eSKarl Rupp if (row[j] != rstart) break; 3222205254eSKarl Rupp } 3237ef1d9bdSSatish Balay if (j < n) ncols = j-i; 3247ef1d9bdSSatish Balay else ncols = n-i; 3257ef1d9bdSSatish Balay /* Now assemble all these values with a single function call */ 3264b4eb8d3SJed Brown ierr = MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr); 3277ef1d9bdSSatish Balay i = j; 3288965ea79SLois Curfman McInnes } 3297ef1d9bdSSatish Balay } 3308798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 3318965ea79SLois Curfman McInnes 33239ddd567SLois Curfman McInnes ierr = MatAssemblyBegin(mdn->A,mode);CHKERRQ(ierr); 33339ddd567SLois Curfman McInnes ierr = MatAssemblyEnd(mdn->A,mode);CHKERRQ(ierr); 3348965ea79SLois Curfman McInnes 3356d4a8577SBarry Smith if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 33639ddd567SLois Curfman McInnes ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 3378965ea79SLois Curfman McInnes } 3383a40ed3dSBarry Smith PetscFunctionReturn(0); 3398965ea79SLois Curfman McInnes } 3408965ea79SLois Curfman McInnes 341dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIDense(Mat A) 3428965ea79SLois Curfman McInnes { 343dfbe8321SBarry Smith PetscErrorCode ierr; 34439ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 3453a40ed3dSBarry Smith 3463a40ed3dSBarry Smith PetscFunctionBegin; 3473a40ed3dSBarry Smith ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 3483a40ed3dSBarry Smith PetscFunctionReturn(0); 3498965ea79SLois Curfman McInnes } 3508965ea79SLois Curfman McInnes 3518965ea79SLois Curfman McInnes /* the code does not do the diagonal entries correctly unless the 3528965ea79SLois Curfman McInnes matrix is square and the column and row owerships are identical. 3538965ea79SLois Curfman McInnes This is a BUG. The only way to fix it seems to be to access 3543501a2bdSLois Curfman McInnes mdn->A and mdn->B directly and not through the MatZeroRows() 3558965ea79SLois Curfman McInnes routine. 3568965ea79SLois Curfman McInnes */ 3572b40b63fSBarry Smith PetscErrorCode MatZeroRows_MPIDense(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 3588965ea79SLois Curfman McInnes { 35939ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 3606849ba73SBarry Smith PetscErrorCode ierr; 361d0f46423SBarry Smith PetscInt i,*owners = A->rmap->range; 36276ec1555SBarry Smith PetscInt *sizes,j,idx,nsends; 36313f74950SBarry Smith PetscInt nmax,*svalues,*starts,*owner,nrecvs; 3647adad957SLisandro Dalcin PetscInt *rvalues,tag = ((PetscObject)A)->tag,count,base,slen,*source; 36513f74950SBarry Smith PetscInt *lens,*lrows,*values; 36613f74950SBarry Smith PetscMPIInt n,imdex,rank = l->rank,size = l->size; 367ce94432eSBarry Smith MPI_Comm comm; 3688965ea79SLois Curfman McInnes MPI_Request *send_waits,*recv_waits; 3698965ea79SLois Curfman McInnes MPI_Status recv_status,*send_status; 370ace3abfcSBarry Smith PetscBool found; 37197b48c8fSBarry Smith const PetscScalar *xx; 37297b48c8fSBarry Smith PetscScalar *bb; 3738965ea79SLois Curfman McInnes 3743a40ed3dSBarry Smith PetscFunctionBegin; 375ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 376ce94432eSBarry Smith if (A->rmap->N != A->cmap->N) SETERRQ(comm,PETSC_ERR_SUP,"Only handles square matrices"); 377b9679d65SBarry Smith if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only handles matrices with identical column and row ownership"); 3788965ea79SLois Curfman McInnes /* first count number of contributors to each processor */ 379f628708eSJed Brown ierr = PetscCalloc1(2*size,&sizes);CHKERRQ(ierr); 380037dbc42SBarry Smith ierr = PetscMalloc1(N+1,&owner);CHKERRQ(ierr); /* see note*/ 3818965ea79SLois Curfman McInnes for (i=0; i<N; i++) { 3828965ea79SLois Curfman McInnes idx = rows[i]; 38335d8aa7fSBarry Smith found = PETSC_FALSE; 3848965ea79SLois Curfman McInnes for (j=0; j<size; j++) { 3858965ea79SLois Curfman McInnes if (idx >= owners[j] && idx < owners[j+1]) { 38676ec1555SBarry Smith sizes[2*j]++; sizes[2*j+1] = 1; owner[i] = j; found = PETSC_TRUE; break; 3878965ea79SLois Curfman McInnes } 3888965ea79SLois Curfman McInnes } 389e32f2f54SBarry Smith if (!found) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Index out of range"); 3908965ea79SLois Curfman McInnes } 3912205254eSKarl Rupp nsends = 0; 39276ec1555SBarry Smith for (i=0; i<size; i++) nsends += sizes[2*i+1]; 3938965ea79SLois Curfman McInnes 3948965ea79SLois Curfman McInnes /* inform other processors of number of messages and max length*/ 39576ec1555SBarry Smith ierr = PetscMaxSum(comm,sizes,&nmax,&nrecvs);CHKERRQ(ierr); 3968965ea79SLois Curfman McInnes 3978965ea79SLois Curfman McInnes /* post receives: */ 398785e854fSJed Brown ierr = PetscMalloc1((nrecvs+1)*(nmax+1),&rvalues);CHKERRQ(ierr); 399854ce69bSBarry Smith ierr = PetscMalloc1(nrecvs+1,&recv_waits);CHKERRQ(ierr); 4008965ea79SLois Curfman McInnes for (i=0; i<nrecvs; i++) { 40113f74950SBarry Smith ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 4028965ea79SLois Curfman McInnes } 4038965ea79SLois Curfman McInnes 4048965ea79SLois Curfman McInnes /* do sends: 4058965ea79SLois Curfman McInnes 1) starts[i] gives the starting index in svalues for stuff going to 4068965ea79SLois Curfman McInnes the ith processor 4078965ea79SLois Curfman McInnes */ 408854ce69bSBarry Smith ierr = PetscMalloc1(N+1,&svalues);CHKERRQ(ierr); 409854ce69bSBarry Smith ierr = PetscMalloc1(nsends+1,&send_waits);CHKERRQ(ierr); 410854ce69bSBarry Smith ierr = PetscMalloc1(size+1,&starts);CHKERRQ(ierr); 4118965ea79SLois Curfman McInnes 4128965ea79SLois Curfman McInnes starts[0] = 0; 41376ec1555SBarry Smith for (i=1; i<size; i++) starts[i] = starts[i-1] + sizes[2*i-2]; 4142205254eSKarl Rupp for (i=0; i<N; i++) svalues[starts[owner[i]]++] = rows[i]; 4152205254eSKarl Rupp 4162205254eSKarl Rupp starts[0] = 0; 41776ec1555SBarry Smith for (i=1; i<size+1; i++) starts[i] = starts[i-1] + sizes[2*i-2]; 4188965ea79SLois Curfman McInnes count = 0; 4198965ea79SLois Curfman McInnes for (i=0; i<size; i++) { 42076ec1555SBarry Smith if (sizes[2*i+1]) { 42176ec1555SBarry Smith ierr = MPI_Isend(svalues+starts[i],sizes[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 4228965ea79SLois Curfman McInnes } 4238965ea79SLois Curfman McInnes } 424606d414cSSatish Balay ierr = PetscFree(starts);CHKERRQ(ierr); 4258965ea79SLois Curfman McInnes 4268965ea79SLois Curfman McInnes base = owners[rank]; 4278965ea79SLois Curfman McInnes 4288965ea79SLois Curfman McInnes /* wait on receives */ 429dcca6d9dSJed Brown ierr = PetscMalloc2(nrecvs,&lens,nrecvs,&source);CHKERRQ(ierr); 43074ed9c26SBarry Smith count = nrecvs; 43174ed9c26SBarry Smith slen = 0; 4328965ea79SLois Curfman McInnes while (count) { 433ca161407SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 4348965ea79SLois Curfman McInnes /* unpack receives into our local space */ 43513f74950SBarry Smith ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr); 4362205254eSKarl Rupp 4378965ea79SLois Curfman McInnes source[imdex] = recv_status.MPI_SOURCE; 4388965ea79SLois Curfman McInnes lens[imdex] = n; 4398965ea79SLois Curfman McInnes slen += n; 4408965ea79SLois Curfman McInnes count--; 4418965ea79SLois Curfman McInnes } 442606d414cSSatish Balay ierr = PetscFree(recv_waits);CHKERRQ(ierr); 4438965ea79SLois Curfman McInnes 4448965ea79SLois Curfman McInnes /* move the data into the send scatter */ 445854ce69bSBarry Smith ierr = PetscMalloc1(slen+1,&lrows);CHKERRQ(ierr); 4468965ea79SLois Curfman McInnes count = 0; 4478965ea79SLois Curfman McInnes for (i=0; i<nrecvs; i++) { 4488965ea79SLois Curfman McInnes values = rvalues + i*nmax; 4498965ea79SLois Curfman McInnes for (j=0; j<lens[i]; j++) { 4508965ea79SLois Curfman McInnes lrows[count++] = values[j] - base; 4518965ea79SLois Curfman McInnes } 4528965ea79SLois Curfman McInnes } 453606d414cSSatish Balay ierr = PetscFree(rvalues);CHKERRQ(ierr); 45474ed9c26SBarry Smith ierr = PetscFree2(lens,source);CHKERRQ(ierr); 455606d414cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 45676ec1555SBarry Smith ierr = PetscFree(sizes);CHKERRQ(ierr); 4578965ea79SLois Curfman McInnes 45897b48c8fSBarry Smith /* fix right hand side if needed */ 45997b48c8fSBarry Smith if (x && b) { 46097b48c8fSBarry Smith ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr); 46197b48c8fSBarry Smith ierr = VecGetArray(b,&bb);CHKERRQ(ierr); 46297b48c8fSBarry Smith for (i=0; i<slen; i++) { 46397b48c8fSBarry Smith bb[lrows[i]] = diag*xx[lrows[i]]; 46497b48c8fSBarry Smith } 46597b48c8fSBarry Smith ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr); 46697b48c8fSBarry Smith ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr); 46797b48c8fSBarry Smith } 46897b48c8fSBarry Smith 4698965ea79SLois Curfman McInnes /* actually zap the local rows */ 470b9679d65SBarry Smith ierr = MatZeroRows(l->A,slen,lrows,0.0,0,0);CHKERRQ(ierr); 471e2eb51b1SBarry Smith if (diag != 0.0) { 472b9679d65SBarry Smith Mat_SeqDense *ll = (Mat_SeqDense*)l->A->data; 473b9679d65SBarry Smith PetscInt m = ll->lda, i; 474b9679d65SBarry Smith 475b9679d65SBarry Smith for (i=0; i<slen; i++) { 476b9679d65SBarry Smith ll->v[lrows[i] + m*(A->cmap->rstart + lrows[i])] = diag; 477b9679d65SBarry Smith } 478b9679d65SBarry Smith } 479606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 4808965ea79SLois Curfman McInnes 4818965ea79SLois Curfman McInnes /* wait on sends */ 4828965ea79SLois Curfman McInnes if (nsends) { 483785e854fSJed Brown ierr = PetscMalloc1(nsends,&send_status);CHKERRQ(ierr); 484ca161407SBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 485606d414cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 4868965ea79SLois Curfman McInnes } 487606d414cSSatish Balay ierr = PetscFree(send_waits);CHKERRQ(ierr); 488606d414cSSatish Balay ierr = PetscFree(svalues);CHKERRQ(ierr); 4893a40ed3dSBarry Smith PetscFunctionReturn(0); 4908965ea79SLois Curfman McInnes } 4918965ea79SLois Curfman McInnes 492cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMult_SeqDense(Mat,Vec,Vec); 493cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultAdd_SeqDense(Mat,Vec,Vec,Vec); 494cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTranspose_SeqDense(Mat,Vec,Vec); 495cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTransposeAdd_SeqDense(Mat,Vec,Vec,Vec); 496cc2e6a90SBarry Smith 497dfbe8321SBarry Smith PetscErrorCode MatMult_MPIDense(Mat mat,Vec xx,Vec yy) 4988965ea79SLois Curfman McInnes { 49939ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 500dfbe8321SBarry Smith PetscErrorCode ierr; 501c456f294SBarry Smith 5023a40ed3dSBarry Smith PetscFunctionBegin; 503ca9f406cSSatish Balay ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 504ca9f406cSSatish Balay ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 505cc2e6a90SBarry Smith ierr = MatMult_SeqDense(mdn->A,mdn->lvec,yy);CHKERRQ(ierr); 5063a40ed3dSBarry Smith PetscFunctionReturn(0); 5078965ea79SLois Curfman McInnes } 5088965ea79SLois Curfman McInnes 509dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz) 5108965ea79SLois Curfman McInnes { 51139ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 512dfbe8321SBarry Smith PetscErrorCode ierr; 513c456f294SBarry Smith 5143a40ed3dSBarry Smith PetscFunctionBegin; 515ca9f406cSSatish Balay ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 516ca9f406cSSatish Balay ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 517cc2e6a90SBarry Smith ierr = MatMultAdd_SeqDense(mdn->A,mdn->lvec,yy,zz);CHKERRQ(ierr); 5183a40ed3dSBarry Smith PetscFunctionReturn(0); 5198965ea79SLois Curfman McInnes } 5208965ea79SLois Curfman McInnes 521dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIDense(Mat A,Vec xx,Vec yy) 522096963f5SLois Curfman McInnes { 523096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 524dfbe8321SBarry Smith PetscErrorCode ierr; 52587828ca2SBarry Smith PetscScalar zero = 0.0; 526096963f5SLois Curfman McInnes 5273a40ed3dSBarry Smith PetscFunctionBegin; 5282dcb1b2aSMatthew Knepley ierr = VecSet(yy,zero);CHKERRQ(ierr); 529cc2e6a90SBarry Smith ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr); 530ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 531ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 5323a40ed3dSBarry Smith PetscFunctionReturn(0); 533096963f5SLois Curfman McInnes } 534096963f5SLois Curfman McInnes 535dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz) 536096963f5SLois Curfman McInnes { 537096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 538dfbe8321SBarry Smith PetscErrorCode ierr; 539096963f5SLois Curfman McInnes 5403a40ed3dSBarry Smith PetscFunctionBegin; 5413501a2bdSLois Curfman McInnes ierr = VecCopy(yy,zz);CHKERRQ(ierr); 542cc2e6a90SBarry Smith ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr); 543ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 544ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 5453a40ed3dSBarry Smith PetscFunctionReturn(0); 546096963f5SLois Curfman McInnes } 547096963f5SLois Curfman McInnes 548dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIDense(Mat A,Vec v) 5498965ea79SLois Curfman McInnes { 55039ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 551096963f5SLois Curfman McInnes Mat_SeqDense *aloc = (Mat_SeqDense*)a->A->data; 552dfbe8321SBarry Smith PetscErrorCode ierr; 553d0f46423SBarry Smith PetscInt len,i,n,m = A->rmap->n,radd; 55487828ca2SBarry Smith PetscScalar *x,zero = 0.0; 555ed3cc1f0SBarry Smith 5563a40ed3dSBarry Smith PetscFunctionBegin; 5572dcb1b2aSMatthew Knepley ierr = VecSet(v,zero);CHKERRQ(ierr); 5581ebc52fbSHong Zhang ierr = VecGetArray(v,&x);CHKERRQ(ierr); 559096963f5SLois Curfman McInnes ierr = VecGetSize(v,&n);CHKERRQ(ierr); 560e32f2f54SBarry Smith if (n != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec"); 561d0f46423SBarry Smith len = PetscMin(a->A->rmap->n,a->A->cmap->n); 562d0f46423SBarry Smith radd = A->rmap->rstart*m; 56344cd7ae7SLois Curfman McInnes for (i=0; i<len; i++) { 564096963f5SLois Curfman McInnes x[i] = aloc->v[radd + i*m + i]; 565096963f5SLois Curfman McInnes } 5661ebc52fbSHong Zhang ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 5673a40ed3dSBarry Smith PetscFunctionReturn(0); 5688965ea79SLois Curfman McInnes } 5698965ea79SLois Curfman McInnes 570dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIDense(Mat mat) 5718965ea79SLois Curfman McInnes { 5723501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 573dfbe8321SBarry Smith PetscErrorCode ierr; 574ed3cc1f0SBarry Smith 5753a40ed3dSBarry Smith PetscFunctionBegin; 576aa482453SBarry Smith #if defined(PETSC_USE_LOG) 577d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D, Cols=%D",mat->rmap->N,mat->cmap->N); 5788965ea79SLois Curfman McInnes #endif 5798798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 5806bf464f9SBarry Smith ierr = MatDestroy(&mdn->A);CHKERRQ(ierr); 5816bf464f9SBarry Smith ierr = VecDestroy(&mdn->lvec);CHKERRQ(ierr); 5826bf464f9SBarry Smith ierr = VecScatterDestroy(&mdn->Mvctx);CHKERRQ(ierr); 58301b82886SBarry Smith 584bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 585dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 5868baccfbdSHong Zhang 58749a6ff4bSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",NULL);CHKERRQ(ierr); 5888baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",NULL);CHKERRQ(ierr); 5898572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",NULL);CHKERRQ(ierr); 5908572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",NULL);CHKERRQ(ierr); 5918572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",NULL);CHKERRQ(ierr); 592d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",NULL);CHKERRQ(ierr); 593d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",NULL);CHKERRQ(ierr); 5948baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 5958baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",NULL);CHKERRQ(ierr); 5968baccfbdSHong Zhang #endif 597bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",NULL);CHKERRQ(ierr); 5984222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 5994222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaij_C",NULL);CHKERRQ(ierr); 600bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 601bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 60252c5f739Sprj- ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_nest_mpidense_C",NULL);CHKERRQ(ierr); 60352c5f739Sprj- ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_nest_mpidense_C",NULL);CHKERRQ(ierr); 6048baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultSymbolic_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 6058baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultNumeric_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 60686aefd0dSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",NULL);CHKERRQ(ierr); 60786aefd0dSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",NULL);CHKERRQ(ierr); 6083a40ed3dSBarry Smith PetscFunctionReturn(0); 6098965ea79SLois Curfman McInnes } 61039ddd567SLois Curfman McInnes 61152c5f739Sprj- PETSC_INTERN PetscErrorCode MatView_SeqDense(Mat,PetscViewer); 61252c5f739Sprj- 6139804daf3SBarry Smith #include <petscdraw.h> 6146849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 6158965ea79SLois Curfman McInnes { 61639ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 617dfbe8321SBarry Smith PetscErrorCode ierr; 6187da1fb6eSBarry Smith PetscMPIInt rank = mdn->rank; 61919fd82e9SBarry Smith PetscViewerType vtype; 620ace3abfcSBarry Smith PetscBool iascii,isdraw; 621b0a32e0cSBarry Smith PetscViewer sviewer; 622f3ef73ceSBarry Smith PetscViewerFormat format; 6238965ea79SLois Curfman McInnes 6243a40ed3dSBarry Smith PetscFunctionBegin; 625251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 626251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 62732077d6dSBarry Smith if (iascii) { 628b0a32e0cSBarry Smith ierr = PetscViewerGetType(viewer,&vtype);CHKERRQ(ierr); 629b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 630456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 6314e220ebcSLois Curfman McInnes MatInfo info; 632888f2ed8SSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 6331575c14dSBarry Smith ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr); 6347b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer," [%d] local rows %D nz %D nz alloced %D mem %D \n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory);CHKERRQ(ierr); 635b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 6361575c14dSBarry Smith ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr); 6375d00a290SHong Zhang ierr = VecScatterView(mdn->Mvctx,viewer);CHKERRQ(ierr); 6383a40ed3dSBarry Smith PetscFunctionReturn(0); 639fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 6403a40ed3dSBarry Smith PetscFunctionReturn(0); 6418965ea79SLois Curfman McInnes } 642f1af5d2fSBarry Smith } else if (isdraw) { 643b0a32e0cSBarry Smith PetscDraw draw; 644ace3abfcSBarry Smith PetscBool isnull; 645f1af5d2fSBarry Smith 646b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 647b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 648f1af5d2fSBarry Smith if (isnull) PetscFunctionReturn(0); 649f1af5d2fSBarry Smith } 65077ed5343SBarry Smith 6517da1fb6eSBarry Smith { 6528965ea79SLois Curfman McInnes /* assemble the entire matrix onto first processor. */ 6538965ea79SLois Curfman McInnes Mat A; 654d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,m,row,i,nz; 655ba8c8a56SBarry Smith PetscInt *cols; 656ba8c8a56SBarry Smith PetscScalar *vals; 6578965ea79SLois Curfman McInnes 658ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr); 6598965ea79SLois Curfman McInnes if (!rank) { 660f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 6613a40ed3dSBarry Smith } else { 662f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 6638965ea79SLois Curfman McInnes } 6647adad957SLisandro Dalcin /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */ 665878740d9SKris Buschelman ierr = MatSetType(A,MATMPIDENSE);CHKERRQ(ierr); 6660298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(A,NULL);CHKERRQ(ierr); 6673bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr); 6688965ea79SLois Curfman McInnes 66939ddd567SLois Curfman McInnes /* Copy the matrix ... This isn't the most efficient means, 67039ddd567SLois Curfman McInnes but it's quick for now */ 67151022da4SBarry Smith A->insertmode = INSERT_VALUES; 6722205254eSKarl Rupp 6732205254eSKarl Rupp row = mat->rmap->rstart; 6742205254eSKarl Rupp m = mdn->A->rmap->n; 6758965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 676ba8c8a56SBarry Smith ierr = MatGetRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 677ba8c8a56SBarry Smith ierr = MatSetValues_MPIDense(A,1,&row,nz,cols,vals,INSERT_VALUES);CHKERRQ(ierr); 678ba8c8a56SBarry Smith ierr = MatRestoreRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 67939ddd567SLois Curfman McInnes row++; 6808965ea79SLois Curfman McInnes } 6818965ea79SLois Curfman McInnes 6826d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 6836d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 6843f08860eSBarry Smith ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 685b9b97703SBarry Smith if (!rank) { 6861a9d3c3cSBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPIDense*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr); 6877da1fb6eSBarry Smith ierr = MatView_SeqDense(((Mat_MPIDense*)(A->data))->A,sviewer);CHKERRQ(ierr); 6888965ea79SLois Curfman McInnes } 6893f08860eSBarry Smith ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 690b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 6916bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 6928965ea79SLois Curfman McInnes } 6933a40ed3dSBarry Smith PetscFunctionReturn(0); 6948965ea79SLois Curfman McInnes } 6958965ea79SLois Curfman McInnes 696dfbe8321SBarry Smith PetscErrorCode MatView_MPIDense(Mat mat,PetscViewer viewer) 6978965ea79SLois Curfman McInnes { 698dfbe8321SBarry Smith PetscErrorCode ierr; 699ace3abfcSBarry Smith PetscBool iascii,isbinary,isdraw,issocket; 7008965ea79SLois Curfman McInnes 701433994e6SBarry Smith PetscFunctionBegin; 702251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 703251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 704251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 705251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 7060f5bd95cSBarry Smith 70732077d6dSBarry Smith if (iascii || issocket || isdraw) { 708f1af5d2fSBarry Smith ierr = MatView_MPIDense_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 7090f5bd95cSBarry Smith } else if (isbinary) { 7108491ab44SLisandro Dalcin ierr = MatView_Dense_Binary(mat,viewer);CHKERRQ(ierr); 71111aeaf0aSBarry Smith } 7123a40ed3dSBarry Smith PetscFunctionReturn(0); 7138965ea79SLois Curfman McInnes } 7148965ea79SLois Curfman McInnes 715dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info) 7168965ea79SLois Curfman McInnes { 7173501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 7183501a2bdSLois Curfman McInnes Mat mdn = mat->A; 719dfbe8321SBarry Smith PetscErrorCode ierr; 7203966268fSBarry Smith PetscLogDouble isend[5],irecv[5]; 7218965ea79SLois Curfman McInnes 7223a40ed3dSBarry Smith PetscFunctionBegin; 7234e220ebcSLois Curfman McInnes info->block_size = 1.0; 7242205254eSKarl Rupp 7254e220ebcSLois Curfman McInnes ierr = MatGetInfo(mdn,MAT_LOCAL,info);CHKERRQ(ierr); 7262205254eSKarl Rupp 7274e220ebcSLois Curfman McInnes isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 7284e220ebcSLois Curfman McInnes isend[3] = info->memory; isend[4] = info->mallocs; 7298965ea79SLois Curfman McInnes if (flag == MAT_LOCAL) { 7304e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 7314e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 7324e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 7334e220ebcSLois Curfman McInnes info->memory = isend[3]; 7344e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 7358965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 7363966268fSBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 7372205254eSKarl Rupp 7384e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7394e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7404e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7414e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7424e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7438965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 7443966268fSBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 7452205254eSKarl Rupp 7464e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7474e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7484e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7494e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7504e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7518965ea79SLois Curfman McInnes } 7524e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 7534e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 7544e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 7553a40ed3dSBarry Smith PetscFunctionReturn(0); 7568965ea79SLois Curfman McInnes } 7578965ea79SLois Curfman McInnes 758ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIDense(Mat A,MatOption op,PetscBool flg) 7598965ea79SLois Curfman McInnes { 76039ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 761dfbe8321SBarry Smith PetscErrorCode ierr; 7628965ea79SLois Curfman McInnes 7633a40ed3dSBarry Smith PetscFunctionBegin; 76412c028f9SKris Buschelman switch (op) { 765512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 76612c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 76712c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 76843674050SBarry Smith MatCheckPreallocated(A,1); 7694e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 77012c028f9SKris Buschelman break; 77112c028f9SKris Buschelman case MAT_ROW_ORIENTED: 77243674050SBarry Smith MatCheckPreallocated(A,1); 7734e0d8c25SBarry Smith a->roworiented = flg; 7744e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 77512c028f9SKris Buschelman break; 7764e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 77713fa8e87SLisandro Dalcin case MAT_KEEP_NONZERO_PATTERN: 77812c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 779071fcb05SBarry Smith case MAT_SORTED_FULL: 780290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 78112c028f9SKris Buschelman break; 78212c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 7834e0d8c25SBarry Smith a->donotstash = flg; 78412c028f9SKris Buschelman break; 78577e54ba9SKris Buschelman case MAT_SYMMETRIC: 78677e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 7879a4540c5SBarry Smith case MAT_HERMITIAN: 7889a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 789600fe468SBarry Smith case MAT_IGNORE_LOWER_TRIANGULAR: 7905d7aebe8SStefano Zampini case MAT_IGNORE_ZERO_ENTRIES: 791290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 79277e54ba9SKris Buschelman break; 79312c028f9SKris Buschelman default: 794e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %s",MatOptions[op]); 7953a40ed3dSBarry Smith } 7963a40ed3dSBarry Smith PetscFunctionReturn(0); 7978965ea79SLois Curfman McInnes } 7988965ea79SLois Curfman McInnes 7998965ea79SLois Curfman McInnes 800dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIDense(Mat A,Vec ll,Vec rr) 8015b2fa520SLois Curfman McInnes { 8025b2fa520SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 8035b2fa520SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)mdn->A->data; 804bca11509SBarry Smith const PetscScalar *l,*r; 805bca11509SBarry Smith PetscScalar x,*v; 806dfbe8321SBarry Smith PetscErrorCode ierr; 807d0f46423SBarry Smith PetscInt i,j,s2a,s3a,s2,s3,m=mdn->A->rmap->n,n=mdn->A->cmap->n; 8085b2fa520SLois Curfman McInnes 8095b2fa520SLois Curfman McInnes PetscFunctionBegin; 81072d926a5SLois Curfman McInnes ierr = MatGetLocalSize(A,&s2,&s3);CHKERRQ(ierr); 8115b2fa520SLois Curfman McInnes if (ll) { 81272d926a5SLois Curfman McInnes ierr = VecGetLocalSize(ll,&s2a);CHKERRQ(ierr); 813e32f2f54SBarry Smith if (s2a != s2) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vector non-conforming local size, %d != %d.", s2a, s2); 814bca11509SBarry Smith ierr = VecGetArrayRead(ll,&l);CHKERRQ(ierr); 8155b2fa520SLois Curfman McInnes for (i=0; i<m; i++) { 8165b2fa520SLois Curfman McInnes x = l[i]; 8175b2fa520SLois Curfman McInnes v = mat->v + i; 8185b2fa520SLois Curfman McInnes for (j=0; j<n; j++) { (*v) *= x; v+= m;} 8195b2fa520SLois Curfman McInnes } 820bca11509SBarry Smith ierr = VecRestoreArrayRead(ll,&l);CHKERRQ(ierr); 821efee365bSSatish Balay ierr = PetscLogFlops(n*m);CHKERRQ(ierr); 8225b2fa520SLois Curfman McInnes } 8235b2fa520SLois Curfman McInnes if (rr) { 824175be7b4SMatthew Knepley ierr = VecGetLocalSize(rr,&s3a);CHKERRQ(ierr); 825e32f2f54SBarry Smith if (s3a != s3) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vec non-conforming local size, %d != %d.", s3a, s3); 826ca9f406cSSatish Balay ierr = VecScatterBegin(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 827ca9f406cSSatish Balay ierr = VecScatterEnd(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 828bca11509SBarry Smith ierr = VecGetArrayRead(mdn->lvec,&r);CHKERRQ(ierr); 8295b2fa520SLois Curfman McInnes for (i=0; i<n; i++) { 8305b2fa520SLois Curfman McInnes x = r[i]; 8315b2fa520SLois Curfman McInnes v = mat->v + i*m; 8322205254eSKarl Rupp for (j=0; j<m; j++) (*v++) *= x; 8335b2fa520SLois Curfman McInnes } 834bca11509SBarry Smith ierr = VecRestoreArrayRead(mdn->lvec,&r);CHKERRQ(ierr); 835efee365bSSatish Balay ierr = PetscLogFlops(n*m);CHKERRQ(ierr); 8365b2fa520SLois Curfman McInnes } 8375b2fa520SLois Curfman McInnes PetscFunctionReturn(0); 8385b2fa520SLois Curfman McInnes } 8395b2fa520SLois Curfman McInnes 840dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIDense(Mat A,NormType type,PetscReal *nrm) 841096963f5SLois Curfman McInnes { 8423501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 8433501a2bdSLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)mdn->A->data; 844dfbe8321SBarry Smith PetscErrorCode ierr; 84513f74950SBarry Smith PetscInt i,j; 846329f5518SBarry Smith PetscReal sum = 0.0; 84787828ca2SBarry Smith PetscScalar *v = mat->v; 8483501a2bdSLois Curfman McInnes 8493a40ed3dSBarry Smith PetscFunctionBegin; 8503501a2bdSLois Curfman McInnes if (mdn->size == 1) { 851064f8208SBarry Smith ierr = MatNorm(mdn->A,type,nrm);CHKERRQ(ierr); 8523501a2bdSLois Curfman McInnes } else { 8533501a2bdSLois Curfman McInnes if (type == NORM_FROBENIUS) { 854d0f46423SBarry Smith for (i=0; i<mdn->A->cmap->n*mdn->A->rmap->n; i++) { 855329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 8563501a2bdSLois Curfman McInnes } 857b2566f29SBarry Smith ierr = MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 8588f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 859dc0b31edSSatish Balay ierr = PetscLogFlops(2.0*mdn->A->cmap->n*mdn->A->rmap->n);CHKERRQ(ierr); 8603a40ed3dSBarry Smith } else if (type == NORM_1) { 861329f5518SBarry Smith PetscReal *tmp,*tmp2; 862580bdb30SBarry Smith ierr = PetscCalloc2(A->cmap->N,&tmp,A->cmap->N,&tmp2);CHKERRQ(ierr); 863064f8208SBarry Smith *nrm = 0.0; 8643501a2bdSLois Curfman McInnes v = mat->v; 865d0f46423SBarry Smith for (j=0; j<mdn->A->cmap->n; j++) { 866d0f46423SBarry Smith for (i=0; i<mdn->A->rmap->n; i++) { 86767e560aaSBarry Smith tmp[j] += PetscAbsScalar(*v); v++; 8683501a2bdSLois Curfman McInnes } 8693501a2bdSLois Curfman McInnes } 870b2566f29SBarry Smith ierr = MPIU_Allreduce(tmp,tmp2,A->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 871d0f46423SBarry Smith for (j=0; j<A->cmap->N; j++) { 872064f8208SBarry Smith if (tmp2[j] > *nrm) *nrm = tmp2[j]; 8733501a2bdSLois Curfman McInnes } 8748627564fSBarry Smith ierr = PetscFree2(tmp,tmp2);CHKERRQ(ierr); 875d0f46423SBarry Smith ierr = PetscLogFlops(A->cmap->n*A->rmap->n);CHKERRQ(ierr); 8763a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 877329f5518SBarry Smith PetscReal ntemp; 8783501a2bdSLois Curfman McInnes ierr = MatNorm(mdn->A,type,&ntemp);CHKERRQ(ierr); 879b2566f29SBarry Smith ierr = MPIU_Allreduce(&ntemp,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 880ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"No support for two norm"); 8813501a2bdSLois Curfman McInnes } 8823a40ed3dSBarry Smith PetscFunctionReturn(0); 8833501a2bdSLois Curfman McInnes } 8843501a2bdSLois Curfman McInnes 885fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIDense(Mat A,MatReuse reuse,Mat *matout) 8863501a2bdSLois Curfman McInnes { 8873501a2bdSLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 8883501a2bdSLois Curfman McInnes Mat_SeqDense *Aloc = (Mat_SeqDense*)a->A->data; 8893501a2bdSLois Curfman McInnes Mat B; 890d0f46423SBarry Smith PetscInt M = A->rmap->N,N = A->cmap->N,m,n,*rwork,rstart = A->rmap->rstart; 8916849ba73SBarry Smith PetscErrorCode ierr; 89213f74950SBarry Smith PetscInt j,i; 89387828ca2SBarry Smith PetscScalar *v; 8943501a2bdSLois Curfman McInnes 8953a40ed3dSBarry Smith PetscFunctionBegin; 896cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 897ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 898d0f46423SBarry Smith ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr); 8997adad957SLisandro Dalcin ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr); 9000298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(B,NULL);CHKERRQ(ierr); 901fc4dec0aSBarry Smith } else { 902fc4dec0aSBarry Smith B = *matout; 903fc4dec0aSBarry Smith } 9043501a2bdSLois Curfman McInnes 905d0f46423SBarry Smith m = a->A->rmap->n; n = a->A->cmap->n; v = Aloc->v; 906785e854fSJed Brown ierr = PetscMalloc1(m,&rwork);CHKERRQ(ierr); 9073501a2bdSLois Curfman McInnes for (i=0; i<m; i++) rwork[i] = rstart + i; 9081acff37aSSatish Balay for (j=0; j<n; j++) { 9093501a2bdSLois Curfman McInnes ierr = MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES);CHKERRQ(ierr); 9103501a2bdSLois Curfman McInnes v += m; 9113501a2bdSLois Curfman McInnes } 912606d414cSSatish Balay ierr = PetscFree(rwork);CHKERRQ(ierr); 9136d4a8577SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 9146d4a8577SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 915cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) { 9163501a2bdSLois Curfman McInnes *matout = B; 9173501a2bdSLois Curfman McInnes } else { 91828be2f97SBarry Smith ierr = MatHeaderMerge(A,&B);CHKERRQ(ierr); 9193501a2bdSLois Curfman McInnes } 9203a40ed3dSBarry Smith PetscFunctionReturn(0); 921096963f5SLois Curfman McInnes } 922096963f5SLois Curfman McInnes 9236849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat*); 92452c5f739Sprj- PETSC_INTERN PetscErrorCode MatScale_MPIDense(Mat,PetscScalar); 9258965ea79SLois Curfman McInnes 9264994cf47SJed Brown PetscErrorCode MatSetUp_MPIDense(Mat A) 927273d9f13SBarry Smith { 928dfbe8321SBarry Smith PetscErrorCode ierr; 929273d9f13SBarry Smith 930273d9f13SBarry Smith PetscFunctionBegin; 931*18992e5dSStefano Zampini ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr); 932*18992e5dSStefano Zampini ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr); 933*18992e5dSStefano Zampini if (!A->preallocated) { 934273d9f13SBarry Smith ierr = MatMPIDenseSetPreallocation(A,0);CHKERRQ(ierr); 935*18992e5dSStefano Zampini } 936273d9f13SBarry Smith PetscFunctionReturn(0); 937273d9f13SBarry Smith } 938273d9f13SBarry Smith 939488007eeSBarry Smith PetscErrorCode MatAXPY_MPIDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str) 940488007eeSBarry Smith { 941488007eeSBarry Smith PetscErrorCode ierr; 942488007eeSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)Y->data, *B = (Mat_MPIDense*)X->data; 943488007eeSBarry Smith 944488007eeSBarry Smith PetscFunctionBegin; 945488007eeSBarry Smith ierr = MatAXPY(A->A,alpha,B->A,str);CHKERRQ(ierr); 946a3fa217bSJose E. Roman ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr); 947488007eeSBarry Smith PetscFunctionReturn(0); 948488007eeSBarry Smith } 949488007eeSBarry Smith 9507087cfbeSBarry Smith PetscErrorCode MatConjugate_MPIDense(Mat mat) 951ba337c44SJed Brown { 952ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)mat->data; 953ba337c44SJed Brown PetscErrorCode ierr; 954ba337c44SJed Brown 955ba337c44SJed Brown PetscFunctionBegin; 956ba337c44SJed Brown ierr = MatConjugate(a->A);CHKERRQ(ierr); 957ba337c44SJed Brown PetscFunctionReturn(0); 958ba337c44SJed Brown } 959ba337c44SJed Brown 960ba337c44SJed Brown PetscErrorCode MatRealPart_MPIDense(Mat A) 961ba337c44SJed Brown { 962ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 963ba337c44SJed Brown PetscErrorCode ierr; 964ba337c44SJed Brown 965ba337c44SJed Brown PetscFunctionBegin; 966ba337c44SJed Brown ierr = MatRealPart(a->A);CHKERRQ(ierr); 967ba337c44SJed Brown PetscFunctionReturn(0); 968ba337c44SJed Brown } 969ba337c44SJed Brown 970ba337c44SJed Brown PetscErrorCode MatImaginaryPart_MPIDense(Mat A) 971ba337c44SJed Brown { 972ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 973ba337c44SJed Brown PetscErrorCode ierr; 974ba337c44SJed Brown 975ba337c44SJed Brown PetscFunctionBegin; 976ba337c44SJed Brown ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 977ba337c44SJed Brown PetscFunctionReturn(0); 978ba337c44SJed Brown } 979ba337c44SJed Brown 98049a6ff4bSBarry Smith static PetscErrorCode MatGetColumnVector_MPIDense(Mat A,Vec v,PetscInt col) 98149a6ff4bSBarry Smith { 98249a6ff4bSBarry Smith PetscErrorCode ierr; 98349a6ff4bSBarry Smith PetscScalar *x; 98449a6ff4bSBarry Smith const PetscScalar *a; 98549a6ff4bSBarry Smith PetscInt lda; 98649a6ff4bSBarry Smith 98749a6ff4bSBarry Smith PetscFunctionBegin; 98849a6ff4bSBarry Smith if (A->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 98949a6ff4bSBarry Smith ierr = MatDenseGetLDA(A,&lda);CHKERRQ(ierr); 99049a6ff4bSBarry Smith ierr = MatDenseGetArrayRead(A,&a);CHKERRQ(ierr); 99149a6ff4bSBarry Smith ierr = VecGetArray(v,&x);CHKERRQ(ierr); 992580bdb30SBarry Smith ierr = PetscArraycpy(x,a+col*lda,A->rmap->n);CHKERRQ(ierr); 99349a6ff4bSBarry Smith ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 99449a6ff4bSBarry Smith ierr = MatDenseGetArrayRead(A,&a);CHKERRQ(ierr); 99549a6ff4bSBarry Smith PetscFunctionReturn(0); 99649a6ff4bSBarry Smith } 99749a6ff4bSBarry Smith 99852c5f739Sprj- PETSC_INTERN PetscErrorCode MatGetColumnNorms_SeqDense(Mat,NormType,PetscReal*); 99952c5f739Sprj- 10000716a85fSBarry Smith PetscErrorCode MatGetColumnNorms_MPIDense(Mat A,NormType type,PetscReal *norms) 10010716a85fSBarry Smith { 10020716a85fSBarry Smith PetscErrorCode ierr; 10030716a85fSBarry Smith PetscInt i,n; 10040716a85fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*) A->data; 10050716a85fSBarry Smith PetscReal *work; 10060716a85fSBarry Smith 10070716a85fSBarry Smith PetscFunctionBegin; 10080298fd71SBarry Smith ierr = MatGetSize(A,NULL,&n);CHKERRQ(ierr); 1009785e854fSJed Brown ierr = PetscMalloc1(n,&work);CHKERRQ(ierr); 10100716a85fSBarry Smith ierr = MatGetColumnNorms_SeqDense(a->A,type,work);CHKERRQ(ierr); 10110716a85fSBarry Smith if (type == NORM_2) { 10120716a85fSBarry Smith for (i=0; i<n; i++) work[i] *= work[i]; 10130716a85fSBarry Smith } 10140716a85fSBarry Smith if (type == NORM_INFINITY) { 1015b2566f29SBarry Smith ierr = MPIU_Allreduce(work,norms,n,MPIU_REAL,MPIU_MAX,A->hdr.comm);CHKERRQ(ierr); 10160716a85fSBarry Smith } else { 1017b2566f29SBarry Smith ierr = MPIU_Allreduce(work,norms,n,MPIU_REAL,MPIU_SUM,A->hdr.comm);CHKERRQ(ierr); 10180716a85fSBarry Smith } 10190716a85fSBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 10200716a85fSBarry Smith if (type == NORM_2) { 10218f1a2a5eSBarry Smith for (i=0; i<n; i++) norms[i] = PetscSqrtReal(norms[i]); 10220716a85fSBarry Smith } 10230716a85fSBarry Smith PetscFunctionReturn(0); 10240716a85fSBarry Smith } 10250716a85fSBarry Smith 102673a71a0fSBarry Smith static PetscErrorCode MatSetRandom_MPIDense(Mat x,PetscRandom rctx) 102773a71a0fSBarry Smith { 102873a71a0fSBarry Smith Mat_MPIDense *d = (Mat_MPIDense*)x->data; 102973a71a0fSBarry Smith PetscErrorCode ierr; 103073a71a0fSBarry Smith PetscScalar *a; 103173a71a0fSBarry Smith PetscInt m,n,i; 103273a71a0fSBarry Smith 103373a71a0fSBarry Smith PetscFunctionBegin; 103473a71a0fSBarry Smith ierr = MatGetSize(d->A,&m,&n);CHKERRQ(ierr); 10358c778c55SBarry Smith ierr = MatDenseGetArray(d->A,&a);CHKERRQ(ierr); 103673a71a0fSBarry Smith for (i=0; i<m*n; i++) { 103773a71a0fSBarry Smith ierr = PetscRandomGetValue(rctx,a+i);CHKERRQ(ierr); 103873a71a0fSBarry Smith } 10398c778c55SBarry Smith ierr = MatDenseRestoreArray(d->A,&a);CHKERRQ(ierr); 104073a71a0fSBarry Smith PetscFunctionReturn(0); 104173a71a0fSBarry Smith } 104273a71a0fSBarry Smith 104352c5f739Sprj- PETSC_INTERN PetscErrorCode MatMatMultNumeric_MPIDense(Mat A,Mat,Mat); 1044fd4e9aacSBarry Smith 10453b49f96aSBarry Smith static PetscErrorCode MatMissingDiagonal_MPIDense(Mat A,PetscBool *missing,PetscInt *d) 10463b49f96aSBarry Smith { 10473b49f96aSBarry Smith PetscFunctionBegin; 10483b49f96aSBarry Smith *missing = PETSC_FALSE; 10493b49f96aSBarry Smith PetscFunctionReturn(0); 10503b49f96aSBarry Smith } 10513b49f96aSBarry Smith 10524222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat,Mat,PetscReal,Mat); 1053cc48ffa7SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat,Mat,Mat); 1054cc48ffa7SToby Isaac 10558965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/ 105609dc0095SBarry Smith static struct _MatOps MatOps_Values = { MatSetValues_MPIDense, 105709dc0095SBarry Smith MatGetRow_MPIDense, 105809dc0095SBarry Smith MatRestoreRow_MPIDense, 105909dc0095SBarry Smith MatMult_MPIDense, 106097304618SKris Buschelman /* 4*/ MatMultAdd_MPIDense, 10617c922b88SBarry Smith MatMultTranspose_MPIDense, 10627c922b88SBarry Smith MatMultTransposeAdd_MPIDense, 10638965ea79SLois Curfman McInnes 0, 106409dc0095SBarry Smith 0, 106509dc0095SBarry Smith 0, 106697304618SKris Buschelman /* 10*/ 0, 106709dc0095SBarry Smith 0, 106809dc0095SBarry Smith 0, 106909dc0095SBarry Smith 0, 107009dc0095SBarry Smith MatTranspose_MPIDense, 107197304618SKris Buschelman /* 15*/ MatGetInfo_MPIDense, 10726e4ee0c6SHong Zhang MatEqual_MPIDense, 107309dc0095SBarry Smith MatGetDiagonal_MPIDense, 10745b2fa520SLois Curfman McInnes MatDiagonalScale_MPIDense, 107509dc0095SBarry Smith MatNorm_MPIDense, 107697304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPIDense, 107709dc0095SBarry Smith MatAssemblyEnd_MPIDense, 107809dc0095SBarry Smith MatSetOption_MPIDense, 107909dc0095SBarry Smith MatZeroEntries_MPIDense, 1080d519adbfSMatthew Knepley /* 24*/ MatZeroRows_MPIDense, 1081919b68f7SBarry Smith 0, 108201b82886SBarry Smith 0, 108301b82886SBarry Smith 0, 108401b82886SBarry Smith 0, 10854994cf47SJed Brown /* 29*/ MatSetUp_MPIDense, 1086273d9f13SBarry Smith 0, 108709dc0095SBarry Smith 0, 1088c56a70eeSBarry Smith MatGetDiagonalBlock_MPIDense, 10898c778c55SBarry Smith 0, 1090d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPIDense, 109109dc0095SBarry Smith 0, 109209dc0095SBarry Smith 0, 109309dc0095SBarry Smith 0, 109409dc0095SBarry Smith 0, 1095d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPIDense, 10967dae84e0SHong Zhang MatCreateSubMatrices_MPIDense, 109709dc0095SBarry Smith 0, 109809dc0095SBarry Smith MatGetValues_MPIDense, 109909dc0095SBarry Smith 0, 1100d519adbfSMatthew Knepley /* 44*/ 0, 110109dc0095SBarry Smith MatScale_MPIDense, 11027d68702bSBarry Smith MatShift_Basic, 110309dc0095SBarry Smith 0, 110409dc0095SBarry Smith 0, 110573a71a0fSBarry Smith /* 49*/ MatSetRandom_MPIDense, 110609dc0095SBarry Smith 0, 110709dc0095SBarry Smith 0, 110809dc0095SBarry Smith 0, 110909dc0095SBarry Smith 0, 1110d519adbfSMatthew Knepley /* 54*/ 0, 111109dc0095SBarry Smith 0, 111209dc0095SBarry Smith 0, 111309dc0095SBarry Smith 0, 111409dc0095SBarry Smith 0, 11157dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPIDense, 1116b9b97703SBarry Smith MatDestroy_MPIDense, 1117b9b97703SBarry Smith MatView_MPIDense, 1118357abbc8SBarry Smith 0, 111997304618SKris Buschelman 0, 1120d519adbfSMatthew Knepley /* 64*/ 0, 112197304618SKris Buschelman 0, 112297304618SKris Buschelman 0, 112397304618SKris Buschelman 0, 112497304618SKris Buschelman 0, 1125d519adbfSMatthew Knepley /* 69*/ 0, 112697304618SKris Buschelman 0, 112797304618SKris Buschelman 0, 112897304618SKris Buschelman 0, 112997304618SKris Buschelman 0, 1130d519adbfSMatthew Knepley /* 74*/ 0, 113197304618SKris Buschelman 0, 113297304618SKris Buschelman 0, 113397304618SKris Buschelman 0, 113497304618SKris Buschelman 0, 1135d519adbfSMatthew Knepley /* 79*/ 0, 113697304618SKris Buschelman 0, 113797304618SKris Buschelman 0, 113897304618SKris Buschelman 0, 11395bba2384SShri Abhyankar /* 83*/ MatLoad_MPIDense, 1140865e5f61SKris Buschelman 0, 1141865e5f61SKris Buschelman 0, 1142865e5f61SKris Buschelman 0, 1143865e5f61SKris Buschelman 0, 1144865e5f61SKris Buschelman 0, 11459775878aSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 11464222ddf1SHong Zhang /* 89*/ 0, 11474222ddf1SHong Zhang 0, 11489775878aSHong Zhang #else 11499775878aSHong Zhang /* 89*/ 0, 1150865e5f61SKris Buschelman 0, 11519775878aSHong Zhang #endif 1152fd4e9aacSBarry Smith MatMatMultNumeric_MPIDense, 11532fbe02b9SBarry Smith 0, 1154ba337c44SJed Brown 0, 1155d519adbfSMatthew Knepley /* 94*/ 0, 11564222ddf1SHong Zhang 0, 11574222ddf1SHong Zhang 0, 1158cc48ffa7SToby Isaac MatMatTransposeMultNumeric_MPIDense_MPIDense, 1159ba337c44SJed Brown 0, 11604222ddf1SHong Zhang /* 99*/ MatProductSetFromOptions_MPIDense, 1161ba337c44SJed Brown 0, 1162ba337c44SJed Brown 0, 1163ba337c44SJed Brown MatConjugate_MPIDense, 1164ba337c44SJed Brown 0, 1165ba337c44SJed Brown /*104*/ 0, 1166ba337c44SJed Brown MatRealPart_MPIDense, 1167ba337c44SJed Brown MatImaginaryPart_MPIDense, 116886d161a7SShri Abhyankar 0, 116986d161a7SShri Abhyankar 0, 117086d161a7SShri Abhyankar /*109*/ 0, 117186d161a7SShri Abhyankar 0, 117286d161a7SShri Abhyankar 0, 117349a6ff4bSBarry Smith MatGetColumnVector_MPIDense, 11743b49f96aSBarry Smith MatMissingDiagonal_MPIDense, 117586d161a7SShri Abhyankar /*114*/ 0, 117686d161a7SShri Abhyankar 0, 117786d161a7SShri Abhyankar 0, 117886d161a7SShri Abhyankar 0, 117986d161a7SShri Abhyankar 0, 118086d161a7SShri Abhyankar /*119*/ 0, 118186d161a7SShri Abhyankar 0, 118286d161a7SShri Abhyankar 0, 11830716a85fSBarry Smith 0, 11840716a85fSBarry Smith 0, 11850716a85fSBarry Smith /*124*/ 0, 11863964eb88SJed Brown MatGetColumnNorms_MPIDense, 11873964eb88SJed Brown 0, 11883964eb88SJed Brown 0, 11893964eb88SJed Brown 0, 11903964eb88SJed Brown /*129*/ 0, 11914222ddf1SHong Zhang 0, 11924222ddf1SHong Zhang 0, 1193cb20be35SHong Zhang MatTransposeMatMultNumeric_MPIDense_MPIDense, 11943964eb88SJed Brown 0, 11953964eb88SJed Brown /*134*/ 0, 11963964eb88SJed Brown 0, 11973964eb88SJed Brown 0, 11983964eb88SJed Brown 0, 11993964eb88SJed Brown 0, 12003964eb88SJed Brown /*139*/ 0, 1201f9426fe0SMark Adams 0, 120294e2cb23SJakub Kruzik 0, 120394e2cb23SJakub Kruzik 0, 120494e2cb23SJakub Kruzik 0, 12054222ddf1SHong Zhang MatCreateMPIMatConcatenateSeqMat_MPIDense, 12064222ddf1SHong Zhang /*145*/ 0, 12074222ddf1SHong Zhang 0, 12084222ddf1SHong Zhang 0 1209ba337c44SJed Brown }; 12108965ea79SLois Curfman McInnes 12117087cfbeSBarry Smith PetscErrorCode MatMPIDenseSetPreallocation_MPIDense(Mat mat,PetscScalar *data) 1212a23d5eceSKris Buschelman { 1213a23d5eceSKris Buschelman Mat_MPIDense *a; 1214dfbe8321SBarry Smith PetscErrorCode ierr; 1215a23d5eceSKris Buschelman 1216a23d5eceSKris Buschelman PetscFunctionBegin; 1217430ada49SBarry Smith if (mat->preallocated) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ARG_WRONGSTATE,"Matrix has already been preallocated"); 1218a23d5eceSKris Buschelman mat->preallocated = PETSC_TRUE; 1219a23d5eceSKris Buschelman /* Note: For now, when data is specified above, this assumes the user correctly 1220a23d5eceSKris Buschelman allocates the local dense storage space. We should add error checking. */ 1221a23d5eceSKris Buschelman 1222a23d5eceSKris Buschelman a = (Mat_MPIDense*)mat->data; 122334ef9618SShri Abhyankar ierr = PetscLayoutSetUp(mat->rmap);CHKERRQ(ierr); 122434ef9618SShri Abhyankar ierr = PetscLayoutSetUp(mat->cmap);CHKERRQ(ierr); 122534ef9618SShri Abhyankar a->nvec = mat->cmap->n; 122634ef9618SShri Abhyankar 1227f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&a->A);CHKERRQ(ierr); 1228d0f46423SBarry Smith ierr = MatSetSizes(a->A,mat->rmap->n,mat->cmap->N,mat->rmap->n,mat->cmap->N);CHKERRQ(ierr); 12295c5985e7SKris Buschelman ierr = MatSetType(a->A,MATSEQDENSE);CHKERRQ(ierr); 12305c5985e7SKris Buschelman ierr = MatSeqDenseSetPreallocation(a->A,data);CHKERRQ(ierr); 12313bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 1232a23d5eceSKris Buschelman PetscFunctionReturn(0); 1233a23d5eceSKris Buschelman } 1234a23d5eceSKris Buschelman 123565b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 1236cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIDense_Elemental(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 12378baccfbdSHong Zhang { 12388ea901baSHong Zhang Mat mat_elemental; 12398ea901baSHong Zhang PetscErrorCode ierr; 124032d7a744SHong Zhang PetscScalar *v; 124132d7a744SHong Zhang PetscInt m=A->rmap->n,N=A->cmap->N,rstart=A->rmap->rstart,i,*rows,*cols; 12428ea901baSHong Zhang 12438baccfbdSHong Zhang PetscFunctionBegin; 1244378336b6SHong Zhang if (reuse == MAT_REUSE_MATRIX) { 1245378336b6SHong Zhang mat_elemental = *newmat; 1246378336b6SHong Zhang ierr = MatZeroEntries(*newmat);CHKERRQ(ierr); 1247378336b6SHong Zhang } else { 1248378336b6SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental);CHKERRQ(ierr); 1249378336b6SHong Zhang ierr = MatSetSizes(mat_elemental,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 1250378336b6SHong Zhang ierr = MatSetType(mat_elemental,MATELEMENTAL);CHKERRQ(ierr); 1251378336b6SHong Zhang ierr = MatSetUp(mat_elemental);CHKERRQ(ierr); 125232d7a744SHong Zhang ierr = MatSetOption(mat_elemental,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 1253378336b6SHong Zhang } 1254378336b6SHong Zhang 125532d7a744SHong Zhang ierr = PetscMalloc2(m,&rows,N,&cols);CHKERRQ(ierr); 125632d7a744SHong Zhang for (i=0; i<N; i++) cols[i] = i; 125732d7a744SHong Zhang for (i=0; i<m; i++) rows[i] = rstart + i; 12588ea901baSHong Zhang 12598ea901baSHong Zhang /* PETSc-Elemental interaface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */ 126032d7a744SHong Zhang ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr); 126132d7a744SHong Zhang ierr = MatSetValues(mat_elemental,m,rows,N,cols,v,ADD_VALUES);CHKERRQ(ierr); 12628ea901baSHong Zhang ierr = MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 12638ea901baSHong Zhang ierr = MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 126432d7a744SHong Zhang ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr); 126532d7a744SHong Zhang ierr = PetscFree2(rows,cols);CHKERRQ(ierr); 12668ea901baSHong Zhang 1267511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 126828be2f97SBarry Smith ierr = MatHeaderReplace(A,&mat_elemental);CHKERRQ(ierr); 12698ea901baSHong Zhang } else { 12708ea901baSHong Zhang *newmat = mat_elemental; 12718ea901baSHong Zhang } 12728baccfbdSHong Zhang PetscFunctionReturn(0); 12738baccfbdSHong Zhang } 127465b80a83SHong Zhang #endif 12758baccfbdSHong Zhang 1276af53bab2SHong Zhang static PetscErrorCode MatDenseGetColumn_MPIDense(Mat A,PetscInt col,PetscScalar **vals) 127786aefd0dSHong Zhang { 127886aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 127986aefd0dSHong Zhang PetscErrorCode ierr; 128086aefd0dSHong Zhang 128186aefd0dSHong Zhang PetscFunctionBegin; 128286aefd0dSHong Zhang ierr = MatDenseGetColumn(mat->A,col,vals);CHKERRQ(ierr); 128386aefd0dSHong Zhang PetscFunctionReturn(0); 128486aefd0dSHong Zhang } 128586aefd0dSHong Zhang 1286af53bab2SHong Zhang static PetscErrorCode MatDenseRestoreColumn_MPIDense(Mat A,PetscScalar **vals) 128786aefd0dSHong Zhang { 128886aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 128986aefd0dSHong Zhang PetscErrorCode ierr; 129086aefd0dSHong Zhang 129186aefd0dSHong Zhang PetscFunctionBegin; 129286aefd0dSHong Zhang ierr = MatDenseRestoreColumn(mat->A,vals);CHKERRQ(ierr); 129386aefd0dSHong Zhang PetscFunctionReturn(0); 129486aefd0dSHong Zhang } 129586aefd0dSHong Zhang 129694e2cb23SJakub Kruzik PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIDense(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 129794e2cb23SJakub Kruzik { 129894e2cb23SJakub Kruzik PetscErrorCode ierr; 129994e2cb23SJakub Kruzik Mat_MPIDense *mat; 130094e2cb23SJakub Kruzik PetscInt m,nloc,N; 130194e2cb23SJakub Kruzik 130294e2cb23SJakub Kruzik PetscFunctionBegin; 130394e2cb23SJakub Kruzik ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr); 130494e2cb23SJakub Kruzik ierr = MatGetLocalSize(inmat,NULL,&nloc);CHKERRQ(ierr); 130594e2cb23SJakub Kruzik if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 130694e2cb23SJakub Kruzik PetscInt sum; 130794e2cb23SJakub Kruzik 130894e2cb23SJakub Kruzik if (n == PETSC_DECIDE) { 130994e2cb23SJakub Kruzik ierr = PetscSplitOwnership(comm,&n,&N);CHKERRQ(ierr); 131094e2cb23SJakub Kruzik } 131194e2cb23SJakub Kruzik /* Check sum(n) = N */ 131294e2cb23SJakub Kruzik ierr = MPIU_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 131394e2cb23SJakub Kruzik if (sum != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns %D != global columns %D",sum,N); 131494e2cb23SJakub Kruzik 131594e2cb23SJakub Kruzik ierr = MatCreateDense(comm,m,n,PETSC_DETERMINE,N,NULL,outmat);CHKERRQ(ierr); 131694e2cb23SJakub Kruzik } 131794e2cb23SJakub Kruzik 131894e2cb23SJakub Kruzik /* numeric phase */ 131994e2cb23SJakub Kruzik mat = (Mat_MPIDense*)(*outmat)->data; 132094e2cb23SJakub Kruzik ierr = MatCopy(inmat,mat->A,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 132194e2cb23SJakub Kruzik ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 132294e2cb23SJakub Kruzik ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 132394e2cb23SJakub Kruzik PetscFunctionReturn(0); 132494e2cb23SJakub Kruzik } 132594e2cb23SJakub Kruzik 13268cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIDense(Mat mat) 1327273d9f13SBarry Smith { 1328273d9f13SBarry Smith Mat_MPIDense *a; 1329dfbe8321SBarry Smith PetscErrorCode ierr; 1330273d9f13SBarry Smith 1331273d9f13SBarry Smith PetscFunctionBegin; 1332b00a9115SJed Brown ierr = PetscNewLog(mat,&a);CHKERRQ(ierr); 1333b0a32e0cSBarry Smith mat->data = (void*)a; 1334273d9f13SBarry Smith ierr = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1335273d9f13SBarry Smith 1336273d9f13SBarry Smith mat->insertmode = NOT_SET_VALUES; 1337ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&a->rank);CHKERRQ(ierr); 1338ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&a->size);CHKERRQ(ierr); 1339273d9f13SBarry Smith 1340273d9f13SBarry Smith /* build cache for off array entries formed */ 1341273d9f13SBarry Smith a->donotstash = PETSC_FALSE; 13422205254eSKarl Rupp 1343ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)mat),1,&mat->stash);CHKERRQ(ierr); 1344273d9f13SBarry Smith 1345273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 1346273d9f13SBarry Smith a->lvec = 0; 1347273d9f13SBarry Smith a->Mvctx = 0; 1348273d9f13SBarry Smith a->roworiented = PETSC_TRUE; 1349273d9f13SBarry Smith 135049a6ff4bSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",MatDenseGetLDA_MPIDense);CHKERRQ(ierr); 1351bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",MatDenseGetArray_MPIDense);CHKERRQ(ierr); 13528572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",MatDenseRestoreArray_MPIDense);CHKERRQ(ierr); 13538572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",MatDenseGetArrayRead_MPIDense);CHKERRQ(ierr); 13548572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",MatDenseRestoreArrayRead_MPIDense);CHKERRQ(ierr); 1355d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",MatDensePlaceArray_MPIDense);CHKERRQ(ierr); 1356d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",MatDenseResetArray_MPIDense);CHKERRQ(ierr); 13578baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 13588baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",MatConvert_MPIDense_Elemental);CHKERRQ(ierr); 13598baccfbdSHong Zhang #endif 1360bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",MatMPIDenseSetPreallocation_MPIDense);CHKERRQ(ierr); 13614222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaij_mpidense_C",MatProductSetFromOptions_MPIAIJ_MPIDense);CHKERRQ(ierr); 13624222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaij_C",MatProductSetFromOptions_MPIDense_MPIAIJ);CHKERRQ(ierr); 1363bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C",MatMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr); 1364bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C",MatMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr); 136552c5f739Sprj- ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_nest_mpidense_C",MatMatMultSymbolic_Nest_Dense);CHKERRQ(ierr); 136652c5f739Sprj- ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_nest_mpidense_C",MatMatMultNumeric_Nest_Dense);CHKERRQ(ierr); 13678949adfdSHong Zhang 13688949adfdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultSymbolic_mpiaij_mpidense_C",MatTransposeMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr); 13698949adfdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultNumeric_mpiaij_mpidense_C",MatTransposeMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr); 1370af53bab2SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",MatDenseGetColumn_MPIDense);CHKERRQ(ierr); 1371af53bab2SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",MatDenseRestoreColumn_MPIDense);CHKERRQ(ierr); 137238aed534SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)mat,MATMPIDENSE);CHKERRQ(ierr); 1373273d9f13SBarry Smith PetscFunctionReturn(0); 1374273d9f13SBarry Smith } 1375273d9f13SBarry Smith 1376209238afSKris Buschelman /*MC 1377002d173eSKris Buschelman MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices. 1378209238afSKris Buschelman 1379209238afSKris Buschelman This matrix type is identical to MATSEQDENSE when constructed with a single process communicator, 1380209238afSKris Buschelman and MATMPIDENSE otherwise. 1381209238afSKris Buschelman 1382209238afSKris Buschelman Options Database Keys: 1383209238afSKris Buschelman . -mat_type dense - sets the matrix type to "dense" during a call to MatSetFromOptions() 1384209238afSKris Buschelman 1385209238afSKris Buschelman Level: beginner 1386209238afSKris Buschelman 138701b82886SBarry Smith 138852c5f739Sprj- .seealso: MATSEQDENSE,MATMPIDENSE 1389209238afSKris Buschelman M*/ 1390209238afSKris Buschelman 1391273d9f13SBarry Smith /*@C 1392273d9f13SBarry Smith MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries 1393273d9f13SBarry Smith 1394273d9f13SBarry Smith Not collective 1395273d9f13SBarry Smith 1396273d9f13SBarry Smith Input Parameters: 13971c4f3114SJed Brown . B - the matrix 13980298fd71SBarry Smith - data - optional location of matrix data. Set data=NULL for PETSc 1399273d9f13SBarry Smith to control all matrix memory allocation. 1400273d9f13SBarry Smith 1401273d9f13SBarry Smith Notes: 1402273d9f13SBarry Smith The dense format is fully compatible with standard Fortran 77 1403273d9f13SBarry Smith storage by columns. 1404273d9f13SBarry Smith 1405273d9f13SBarry Smith The data input variable is intended primarily for Fortran programmers 1406273d9f13SBarry Smith who wish to allocate their own matrix memory space. Most users should 14070298fd71SBarry Smith set data=NULL. 1408273d9f13SBarry Smith 1409273d9f13SBarry Smith Level: intermediate 1410273d9f13SBarry Smith 1411273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 1412273d9f13SBarry Smith @*/ 14131c4f3114SJed Brown PetscErrorCode MatMPIDenseSetPreallocation(Mat B,PetscScalar *data) 1414273d9f13SBarry Smith { 14154ac538c5SBarry Smith PetscErrorCode ierr; 1416273d9f13SBarry Smith 1417273d9f13SBarry Smith PetscFunctionBegin; 14181c4f3114SJed Brown ierr = PetscTryMethod(B,"MatMPIDenseSetPreallocation_C",(Mat,PetscScalar*),(B,data));CHKERRQ(ierr); 1419273d9f13SBarry Smith PetscFunctionReturn(0); 1420273d9f13SBarry Smith } 1421273d9f13SBarry Smith 1422d3042a70SBarry Smith /*@ 1423d3042a70SBarry Smith MatDensePlaceArray - Allows one to replace the array in a dense array with an 1424d3042a70SBarry Smith array provided by the user. This is useful to avoid copying an array 1425d3042a70SBarry Smith into a matrix 1426d3042a70SBarry Smith 1427d3042a70SBarry Smith Not Collective 1428d3042a70SBarry Smith 1429d3042a70SBarry Smith Input Parameters: 1430d3042a70SBarry Smith + mat - the matrix 1431d3042a70SBarry Smith - array - the array in column major order 1432d3042a70SBarry Smith 1433d3042a70SBarry Smith Notes: 1434d3042a70SBarry Smith You can return to the original array with a call to MatDenseResetArray(). The user is responsible for freeing this array; it will not be 1435d3042a70SBarry Smith freed when the matrix is destroyed. 1436d3042a70SBarry Smith 1437d3042a70SBarry Smith Level: developer 1438d3042a70SBarry Smith 1439d3042a70SBarry Smith .seealso: MatDenseGetArray(), MatDenseResetArray(), VecPlaceArray(), VecGetArray(), VecRestoreArray(), VecReplaceArray(), VecResetArray() 1440d3042a70SBarry Smith 1441d3042a70SBarry Smith @*/ 1442d3042a70SBarry Smith PetscErrorCode MatDensePlaceArray(Mat mat,const PetscScalar array[]) 1443d3042a70SBarry Smith { 1444d3042a70SBarry Smith PetscErrorCode ierr; 1445d3042a70SBarry Smith PetscFunctionBegin; 1446d3042a70SBarry Smith ierr = PetscUseMethod(mat,"MatDensePlaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr); 1447d3042a70SBarry Smith ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 1448d3042a70SBarry Smith PetscFunctionReturn(0); 1449d3042a70SBarry Smith } 1450d3042a70SBarry Smith 1451d3042a70SBarry Smith /*@ 1452d3042a70SBarry Smith MatDenseResetArray - Resets the matrix array to that it previously had before the call to MatDensePlaceArray() 1453d3042a70SBarry Smith 1454d3042a70SBarry Smith Not Collective 1455d3042a70SBarry Smith 1456d3042a70SBarry Smith Input Parameters: 1457d3042a70SBarry Smith . mat - the matrix 1458d3042a70SBarry Smith 1459d3042a70SBarry Smith Notes: 1460d3042a70SBarry Smith You can only call this after a call to MatDensePlaceArray() 1461d3042a70SBarry Smith 1462d3042a70SBarry Smith Level: developer 1463d3042a70SBarry Smith 1464d3042a70SBarry Smith .seealso: MatDenseGetArray(), MatDensePlaceArray(), VecPlaceArray(), VecGetArray(), VecRestoreArray(), VecReplaceArray(), VecResetArray() 1465d3042a70SBarry Smith 1466d3042a70SBarry Smith @*/ 1467d3042a70SBarry Smith PetscErrorCode MatDenseResetArray(Mat mat) 1468d3042a70SBarry Smith { 1469d3042a70SBarry Smith PetscErrorCode ierr; 1470d3042a70SBarry Smith PetscFunctionBegin; 1471d3042a70SBarry Smith ierr = PetscUseMethod(mat,"MatDenseResetArray_C",(Mat),(mat));CHKERRQ(ierr); 1472d3042a70SBarry Smith ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 1473d3042a70SBarry Smith PetscFunctionReturn(0); 1474d3042a70SBarry Smith } 1475d3042a70SBarry Smith 14768965ea79SLois Curfman McInnes /*@C 147769b1f4b7SBarry Smith MatCreateDense - Creates a parallel matrix in dense format. 14788965ea79SLois Curfman McInnes 1479d083f849SBarry Smith Collective 1480db81eaa0SLois Curfman McInnes 14818965ea79SLois Curfman McInnes Input Parameters: 1482db81eaa0SLois Curfman McInnes + comm - MPI communicator 14838965ea79SLois Curfman McInnes . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1484db81eaa0SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 14858965ea79SLois Curfman McInnes . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 1486db81eaa0SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 14876cfe35ddSJose E. Roman - data - optional location of matrix data. Set data=NULL (PETSC_NULL_SCALAR for Fortran users) for PETSc 1488dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 14898965ea79SLois Curfman McInnes 14908965ea79SLois Curfman McInnes Output Parameter: 1491477f1c0bSLois Curfman McInnes . A - the matrix 14928965ea79SLois Curfman McInnes 1493b259b22eSLois Curfman McInnes Notes: 149439ddd567SLois Curfman McInnes The dense format is fully compatible with standard Fortran 77 149539ddd567SLois Curfman McInnes storage by columns. 14968965ea79SLois Curfman McInnes 149718f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 149818f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 14996cfe35ddSJose E. Roman set data=NULL (PETSC_NULL_SCALAR for Fortran users). 150018f449edSLois Curfman McInnes 15018965ea79SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 15028965ea79SLois Curfman McInnes (possibly both). 15038965ea79SLois Curfman McInnes 1504027ccd11SLois Curfman McInnes Level: intermediate 1505027ccd11SLois Curfman McInnes 150639ddd567SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 15078965ea79SLois Curfman McInnes @*/ 150869b1f4b7SBarry Smith PetscErrorCode MatCreateDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 15098965ea79SLois Curfman McInnes { 15106849ba73SBarry Smith PetscErrorCode ierr; 151113f74950SBarry Smith PetscMPIInt size; 15128965ea79SLois Curfman McInnes 15133a40ed3dSBarry Smith PetscFunctionBegin; 1514f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 15158491ab44SLisandro Dalcin PetscValidLogicalCollectiveBool(*A,!!data,6); 1516f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 1517273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1518273d9f13SBarry Smith if (size > 1) { 1519273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIDENSE);CHKERRQ(ierr); 1520273d9f13SBarry Smith ierr = MatMPIDenseSetPreallocation(*A,data);CHKERRQ(ierr); 15216cfe35ddSJose E. Roman if (data) { /* user provided data array, so no need to assemble */ 15226cfe35ddSJose E. Roman ierr = MatSetUpMultiply_MPIDense(*A);CHKERRQ(ierr); 15236cfe35ddSJose E. Roman (*A)->assembled = PETSC_TRUE; 15246cfe35ddSJose E. Roman } 1525273d9f13SBarry Smith } else { 1526273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr); 1527273d9f13SBarry Smith ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr); 15288c469469SLois Curfman McInnes } 15293a40ed3dSBarry Smith PetscFunctionReturn(0); 15308965ea79SLois Curfman McInnes } 15318965ea79SLois Curfman McInnes 15326849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat) 15338965ea79SLois Curfman McInnes { 15348965ea79SLois Curfman McInnes Mat mat; 15353501a2bdSLois Curfman McInnes Mat_MPIDense *a,*oldmat = (Mat_MPIDense*)A->data; 1536dfbe8321SBarry Smith PetscErrorCode ierr; 15378965ea79SLois Curfman McInnes 15383a40ed3dSBarry Smith PetscFunctionBegin; 15398965ea79SLois Curfman McInnes *newmat = 0; 1540ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&mat);CHKERRQ(ierr); 1541d0f46423SBarry Smith ierr = MatSetSizes(mat,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 15427adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)A)->type_name);CHKERRQ(ierr); 1543834f8fabSBarry Smith a = (Mat_MPIDense*)mat->data; 15445aa7edbeSHong Zhang 1545d5f3da31SBarry Smith mat->factortype = A->factortype; 1546c456f294SBarry Smith mat->assembled = PETSC_TRUE; 1547273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 15488965ea79SLois Curfman McInnes 15498965ea79SLois Curfman McInnes a->size = oldmat->size; 15508965ea79SLois Curfman McInnes a->rank = oldmat->rank; 1551e0fa3b82SLois Curfman McInnes mat->insertmode = NOT_SET_VALUES; 1552b9b97703SBarry Smith a->nvec = oldmat->nvec; 15533782ba37SSatish Balay a->donotstash = oldmat->donotstash; 1554e04c1aa4SHong Zhang 15551e1e43feSBarry Smith ierr = PetscLayoutReference(A->rmap,&mat->rmap);CHKERRQ(ierr); 15561e1e43feSBarry Smith ierr = PetscLayoutReference(A->cmap,&mat->cmap);CHKERRQ(ierr); 15578965ea79SLois Curfman McInnes 1558329f5518SBarry Smith ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 15595609ef8eSBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 15603bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 156101b82886SBarry Smith 15628965ea79SLois Curfman McInnes *newmat = mat; 15633a40ed3dSBarry Smith PetscFunctionReturn(0); 15648965ea79SLois Curfman McInnes } 15658965ea79SLois Curfman McInnes 1566eb91f321SVaclav Hapla PetscErrorCode MatLoad_MPIDense(Mat newMat, PetscViewer viewer) 1567eb91f321SVaclav Hapla { 1568eb91f321SVaclav Hapla PetscErrorCode ierr; 156987d5ce66SSatish Balay PetscBool isbinary; 157087d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 157187d5ce66SSatish Balay PetscBool ishdf5; 157287d5ce66SSatish Balay #endif 1573eb91f321SVaclav Hapla 1574eb91f321SVaclav Hapla PetscFunctionBegin; 1575eb91f321SVaclav Hapla PetscValidHeaderSpecific(newMat,MAT_CLASSID,1); 1576eb91f321SVaclav Hapla PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2); 1577eb91f321SVaclav Hapla /* force binary viewer to load .info file if it has not yet done so */ 1578eb91f321SVaclav Hapla ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr); 1579eb91f321SVaclav Hapla ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 158087d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 1581eb91f321SVaclav Hapla ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERHDF5, &ishdf5);CHKERRQ(ierr); 158287d5ce66SSatish Balay #endif 1583eb91f321SVaclav Hapla if (isbinary) { 15848491ab44SLisandro Dalcin ierr = MatLoad_Dense_Binary(newMat,viewer);CHKERRQ(ierr); 1585eb91f321SVaclav Hapla #if defined(PETSC_HAVE_HDF5) 158687d5ce66SSatish Balay } else if (ishdf5) { 1587eb91f321SVaclav Hapla ierr = MatLoad_Dense_HDF5(newMat,viewer);CHKERRQ(ierr); 1588eb91f321SVaclav Hapla #endif 158987d5ce66SSatish Balay } else SETERRQ2(PetscObjectComm((PetscObject)newMat),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)newMat)->type_name); 1590eb91f321SVaclav Hapla PetscFunctionReturn(0); 1591eb91f321SVaclav Hapla } 1592eb91f321SVaclav Hapla 1593ace3abfcSBarry Smith PetscErrorCode MatEqual_MPIDense(Mat A,Mat B,PetscBool *flag) 15946e4ee0c6SHong Zhang { 15956e4ee0c6SHong Zhang Mat_MPIDense *matB = (Mat_MPIDense*)B->data,*matA = (Mat_MPIDense*)A->data; 15966e4ee0c6SHong Zhang Mat a,b; 1597ace3abfcSBarry Smith PetscBool flg; 15986e4ee0c6SHong Zhang PetscErrorCode ierr; 159990ace30eSBarry Smith 16006e4ee0c6SHong Zhang PetscFunctionBegin; 16016e4ee0c6SHong Zhang a = matA->A; 16026e4ee0c6SHong Zhang b = matB->A; 16036e4ee0c6SHong Zhang ierr = MatEqual(a,b,&flg);CHKERRQ(ierr); 1604b2566f29SBarry Smith ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 16056e4ee0c6SHong Zhang PetscFunctionReturn(0); 16066e4ee0c6SHong Zhang } 160790ace30eSBarry Smith 1608baa3c1c6SHong Zhang PetscErrorCode MatDestroy_MatTransMatMult_MPIDense_MPIDense(Mat A) 1609baa3c1c6SHong Zhang { 1610baa3c1c6SHong Zhang PetscErrorCode ierr; 1611baa3c1c6SHong Zhang Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1612baa3c1c6SHong Zhang Mat_TransMatMultDense *atb = a->atbdense; 1613baa3c1c6SHong Zhang 1614baa3c1c6SHong Zhang PetscFunctionBegin; 1615c5ef1628SHong Zhang ierr = PetscFree3(atb->sendbuf,atb->atbarray,atb->recvcounts);CHKERRQ(ierr); 1616baa3c1c6SHong Zhang ierr = (atb->destroy)(A);CHKERRQ(ierr); 1617baa3c1c6SHong Zhang ierr = PetscFree(atb);CHKERRQ(ierr); 1618baa3c1c6SHong Zhang PetscFunctionReturn(0); 1619baa3c1c6SHong Zhang } 1620baa3c1c6SHong Zhang 1621cc48ffa7SToby Isaac PetscErrorCode MatDestroy_MatMatTransMult_MPIDense_MPIDense(Mat A) 1622cc48ffa7SToby Isaac { 1623cc48ffa7SToby Isaac PetscErrorCode ierr; 1624cc48ffa7SToby Isaac Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1625cc48ffa7SToby Isaac Mat_MatTransMultDense *abt = a->abtdense; 1626cc48ffa7SToby Isaac 1627cc48ffa7SToby Isaac PetscFunctionBegin; 1628cc48ffa7SToby Isaac ierr = PetscFree2(abt->buf[0],abt->buf[1]);CHKERRQ(ierr); 1629faa55883SToby Isaac ierr = PetscFree2(abt->recvcounts,abt->recvdispls);CHKERRQ(ierr); 1630cc48ffa7SToby Isaac ierr = (abt->destroy)(A);CHKERRQ(ierr); 1631cc48ffa7SToby Isaac ierr = PetscFree(abt);CHKERRQ(ierr); 1632cc48ffa7SToby Isaac PetscFunctionReturn(0); 1633cc48ffa7SToby Isaac } 1634cc48ffa7SToby Isaac 1635cb20be35SHong Zhang PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 1636cb20be35SHong Zhang { 1637baa3c1c6SHong Zhang Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 1638660d5466SHong Zhang Mat_SeqDense *aseq=(Mat_SeqDense*)(a->A)->data, *bseq=(Mat_SeqDense*)(b->A)->data; 1639baa3c1c6SHong Zhang Mat_TransMatMultDense *atb = c->atbdense; 1640cb20be35SHong Zhang PetscErrorCode ierr; 1641cb20be35SHong Zhang MPI_Comm comm; 1642d5017740SHong Zhang PetscMPIInt rank,size,*recvcounts=atb->recvcounts; 1643c5ef1628SHong Zhang PetscScalar *carray,*atbarray=atb->atbarray,*sendbuf=atb->sendbuf; 1644d5017740SHong Zhang PetscInt i,cN=C->cmap->N,cM=C->rmap->N,proc,k,j; 1645660d5466SHong Zhang PetscScalar _DOne=1.0,_DZero=0.0; 1646adc7a786SHong Zhang PetscBLASInt am,an,bn,aN; 1647e68c0b26SHong Zhang const PetscInt *ranges; 1648cb20be35SHong Zhang 1649cb20be35SHong Zhang PetscFunctionBegin; 1650cb20be35SHong Zhang ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 1651cb20be35SHong Zhang ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 1652cb20be35SHong Zhang ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1653e68c0b26SHong Zhang 1654c5ef1628SHong Zhang /* compute atbarray = aseq^T * bseq */ 1655660d5466SHong Zhang ierr = PetscBLASIntCast(a->A->cmap->n,&an);CHKERRQ(ierr); 1656660d5466SHong Zhang ierr = PetscBLASIntCast(b->A->cmap->n,&bn);CHKERRQ(ierr); 1657660d5466SHong Zhang ierr = PetscBLASIntCast(a->A->rmap->n,&am);CHKERRQ(ierr); 1658adc7a786SHong Zhang ierr = PetscBLASIntCast(A->cmap->N,&aN);CHKERRQ(ierr); 1659adc7a786SHong Zhang PetscStackCallBLAS("BLASgemm",BLASgemm_("T","N",&an,&bn,&am,&_DOne,aseq->v,&aseq->lda,bseq->v,&bseq->lda,&_DZero,atbarray,&aN)); 1660cb20be35SHong Zhang 1661cb20be35SHong Zhang ierr = MatGetOwnershipRanges(C,&ranges);CHKERRQ(ierr); 1662c5ef1628SHong Zhang for (i=0; i<size; i++) recvcounts[i] = (ranges[i+1] - ranges[i])*cN; 1663cb20be35SHong Zhang 1664660d5466SHong Zhang /* arrange atbarray into sendbuf */ 1665cb20be35SHong Zhang k = 0; 1666cb20be35SHong Zhang for (proc=0; proc<size; proc++) { 1667baa3c1c6SHong Zhang for (j=0; j<cN; j++) { 1668c5ef1628SHong Zhang for (i=ranges[proc]; i<ranges[proc+1]; i++) sendbuf[k++] = atbarray[i+j*cM]; 1669cb20be35SHong Zhang } 1670cb20be35SHong Zhang } 1671c5ef1628SHong Zhang /* sum all atbarray to local values of C */ 1672660d5466SHong Zhang ierr = MatDenseGetArray(c->A,&carray);CHKERRQ(ierr); 16733462b7efSHong Zhang ierr = MPI_Reduce_scatter(sendbuf,carray,recvcounts,MPIU_SCALAR,MPIU_SUM,comm);CHKERRQ(ierr); 1674660d5466SHong Zhang ierr = MatDenseRestoreArray(c->A,&carray);CHKERRQ(ierr); 1675cb20be35SHong Zhang PetscFunctionReturn(0); 1676cb20be35SHong Zhang } 1677cb20be35SHong Zhang 16784222ddf1SHong Zhang PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat C) 1679cb20be35SHong Zhang { 1680cb20be35SHong Zhang PetscErrorCode ierr; 1681cb20be35SHong Zhang MPI_Comm comm; 1682baa3c1c6SHong Zhang PetscMPIInt size; 1683660d5466SHong Zhang PetscInt cm=A->cmap->n,cM,cN=B->cmap->N; 1684baa3c1c6SHong Zhang Mat_MPIDense *c; 1685baa3c1c6SHong Zhang Mat_TransMatMultDense *atb; 1686cb20be35SHong Zhang 1687cb20be35SHong Zhang PetscFunctionBegin; 1688baa3c1c6SHong Zhang ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 1689cb20be35SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) { 1690cb20be35SHong Zhang SETERRQ4(comm,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != B (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 1691cb20be35SHong Zhang } 1692cb20be35SHong Zhang 16934222ddf1SHong Zhang /* create matrix product C */ 16944222ddf1SHong Zhang ierr = MatSetSizes(C,cm,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 16954222ddf1SHong Zhang ierr = MatSetType(C,MATMPIDENSE);CHKERRQ(ierr); 1696*18992e5dSStefano Zampini ierr = MatSetUp(C);CHKERRQ(ierr); 16974222ddf1SHong Zhang ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 16984222ddf1SHong Zhang ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1699baa3c1c6SHong Zhang 17004222ddf1SHong Zhang /* create data structure for reuse C */ 1701baa3c1c6SHong Zhang ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1702baa3c1c6SHong Zhang ierr = PetscNew(&atb);CHKERRQ(ierr); 17034222ddf1SHong Zhang cM = C->rmap->N; 1704c5ef1628SHong Zhang ierr = PetscMalloc3(cM*cN,&atb->sendbuf,cM*cN,&atb->atbarray,size,&atb->recvcounts);CHKERRQ(ierr); 1705baa3c1c6SHong Zhang 17064222ddf1SHong Zhang c = (Mat_MPIDense*)C->data; 1707baa3c1c6SHong Zhang c->atbdense = atb; 17084222ddf1SHong Zhang atb->destroy = C->ops->destroy; 17094222ddf1SHong Zhang C->ops->destroy = MatDestroy_MatTransMatMult_MPIDense_MPIDense; 1710cb20be35SHong Zhang PetscFunctionReturn(0); 1711cb20be35SHong Zhang } 1712cb20be35SHong Zhang 17134222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat A, Mat B, PetscReal fill, Mat C) 1714cb20be35SHong Zhang { 1715cb20be35SHong Zhang PetscErrorCode ierr; 1716cc48ffa7SToby Isaac MPI_Comm comm; 1717cc48ffa7SToby Isaac PetscMPIInt i, size; 1718cc48ffa7SToby Isaac PetscInt maxRows, bufsiz; 1719cc48ffa7SToby Isaac Mat_MPIDense *c; 1720cc48ffa7SToby Isaac PetscMPIInt tag; 17214222ddf1SHong Zhang PetscInt alg; 1722cc48ffa7SToby Isaac Mat_MatTransMultDense *abt; 17234222ddf1SHong Zhang Mat_Product *product = C->product; 17244222ddf1SHong Zhang PetscBool flg; 1725cc48ffa7SToby Isaac 1726cc48ffa7SToby Isaac PetscFunctionBegin; 17274222ddf1SHong Zhang /* check local size of A and B */ 17284222ddf1SHong Zhang if (A->cmap->n != B->cmap->n) { 17294222ddf1SHong Zhang SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local column dimensions are incompatible, A (%D) != B (%D)",A->cmap->n,B->cmap->n); 1730cc48ffa7SToby Isaac } 1731cc48ffa7SToby Isaac 17324222ddf1SHong Zhang ierr = PetscStrcmp(product->alg,"allgatherv",&flg);CHKERRQ(ierr); 17334222ddf1SHong Zhang if (flg) { 17344222ddf1SHong Zhang alg = 0; 17354222ddf1SHong Zhang } else alg = 1; 1736cc48ffa7SToby Isaac 17374222ddf1SHong Zhang /* setup matrix product C */ 17384222ddf1SHong Zhang ierr = MatSetSizes(C,A->rmap->n,B->rmap->n,A->rmap->N,B->rmap->N);CHKERRQ(ierr); 17394222ddf1SHong Zhang ierr = MatSetType(C,MATMPIDENSE);CHKERRQ(ierr); 1740*18992e5dSStefano Zampini ierr = MatSetUp(C);CHKERRQ(ierr); 17414222ddf1SHong Zhang ierr = PetscObjectGetNewTag((PetscObject)C, &tag);CHKERRQ(ierr); 17424222ddf1SHong Zhang ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 17434222ddf1SHong Zhang ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 17444222ddf1SHong Zhang 17454222ddf1SHong Zhang /* create data structure for reuse C */ 17464222ddf1SHong Zhang ierr = PetscObjectGetComm((PetscObject)C,&comm);CHKERRQ(ierr); 1747cc48ffa7SToby Isaac ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1748cc48ffa7SToby Isaac ierr = PetscNew(&abt);CHKERRQ(ierr); 1749cc48ffa7SToby Isaac abt->tag = tag; 1750faa55883SToby Isaac abt->alg = alg; 1751faa55883SToby Isaac switch (alg) { 17524222ddf1SHong Zhang case 1: /* alg: "cyclic" */ 1753cc48ffa7SToby Isaac for (maxRows = 0, i = 0; i < size; i++) maxRows = PetscMax(maxRows, (B->rmap->range[i + 1] - B->rmap->range[i])); 1754cc48ffa7SToby Isaac bufsiz = A->cmap->N * maxRows; 1755cc48ffa7SToby Isaac ierr = PetscMalloc2(bufsiz,&(abt->buf[0]),bufsiz,&(abt->buf[1]));CHKERRQ(ierr); 1756faa55883SToby Isaac break; 17574222ddf1SHong Zhang default: /* alg: "allgatherv" */ 1758faa55883SToby Isaac ierr = PetscMalloc2(B->rmap->n * B->cmap->N, &(abt->buf[0]), B->rmap->N * B->cmap->N, &(abt->buf[1]));CHKERRQ(ierr); 1759faa55883SToby Isaac ierr = PetscMalloc2(size,&(abt->recvcounts),size+1,&(abt->recvdispls));CHKERRQ(ierr); 1760faa55883SToby Isaac for (i = 0; i <= size; i++) abt->recvdispls[i] = B->rmap->range[i] * A->cmap->N; 1761faa55883SToby Isaac for (i = 0; i < size; i++) abt->recvcounts[i] = abt->recvdispls[i + 1] - abt->recvdispls[i]; 1762faa55883SToby Isaac break; 1763faa55883SToby Isaac } 1764cc48ffa7SToby Isaac 17654222ddf1SHong Zhang c = (Mat_MPIDense*)C->data; 1766cc48ffa7SToby Isaac c->abtdense = abt; 17674222ddf1SHong Zhang abt->destroy = C->ops->destroy; 17684222ddf1SHong Zhang C->ops->destroy = MatDestroy_MatMatTransMult_MPIDense_MPIDense; 17694222ddf1SHong Zhang C->ops->mattransposemultnumeric = MatMatTransposeMultNumeric_MPIDense_MPIDense; 1770cc48ffa7SToby Isaac PetscFunctionReturn(0); 1771cc48ffa7SToby Isaac } 1772cc48ffa7SToby Isaac 1773faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(Mat A, Mat B, Mat C) 1774cc48ffa7SToby Isaac { 1775cc48ffa7SToby Isaac Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 1776cc48ffa7SToby Isaac Mat_SeqDense *aseq=(Mat_SeqDense*)(a->A)->data, *bseq=(Mat_SeqDense*)(b->A)->data; 1777cc48ffa7SToby Isaac Mat_SeqDense *cseq=(Mat_SeqDense*)(c->A)->data; 1778cc48ffa7SToby Isaac Mat_MatTransMultDense *abt = c->abtdense; 1779cc48ffa7SToby Isaac PetscErrorCode ierr; 1780cc48ffa7SToby Isaac MPI_Comm comm; 1781cc48ffa7SToby Isaac PetscMPIInt rank,size, sendsiz, recvsiz, sendto, recvfrom, recvisfrom; 1782ce36caf3SSatish Balay PetscScalar *sendbuf, *recvbuf=0, *carray; 1783cc48ffa7SToby Isaac PetscInt i,cK=A->cmap->N,k,j,bn; 1784cc48ffa7SToby Isaac PetscScalar _DOne=1.0,_DZero=0.0; 1785cc48ffa7SToby Isaac PetscBLASInt cm, cn, ck; 1786cc48ffa7SToby Isaac MPI_Request reqs[2]; 1787cc48ffa7SToby Isaac const PetscInt *ranges; 1788cc48ffa7SToby Isaac 1789cc48ffa7SToby Isaac PetscFunctionBegin; 1790cc48ffa7SToby Isaac ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 1791cc48ffa7SToby Isaac ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 1792cc48ffa7SToby Isaac ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1793cc48ffa7SToby Isaac 1794cc48ffa7SToby Isaac ierr = MatGetOwnershipRanges(B,&ranges);CHKERRQ(ierr); 1795cc48ffa7SToby Isaac bn = B->rmap->n; 1796cc48ffa7SToby Isaac if (bseq->lda == bn) { 1797cc48ffa7SToby Isaac sendbuf = bseq->v; 1798cc48ffa7SToby Isaac } else { 1799cc48ffa7SToby Isaac sendbuf = abt->buf[0]; 1800cc48ffa7SToby Isaac for (k = 0, i = 0; i < cK; i++) { 1801cc48ffa7SToby Isaac for (j = 0; j < bn; j++, k++) { 1802cc48ffa7SToby Isaac sendbuf[k] = bseq->v[i * bseq->lda + j]; 1803cc48ffa7SToby Isaac } 1804cc48ffa7SToby Isaac } 1805cc48ffa7SToby Isaac } 1806cc48ffa7SToby Isaac if (size > 1) { 1807cc48ffa7SToby Isaac sendto = (rank + size - 1) % size; 1808cc48ffa7SToby Isaac recvfrom = (rank + size + 1) % size; 1809cc48ffa7SToby Isaac } else { 1810cc48ffa7SToby Isaac sendto = recvfrom = 0; 1811cc48ffa7SToby Isaac } 1812cc48ffa7SToby Isaac ierr = PetscBLASIntCast(cK,&ck);CHKERRQ(ierr); 1813cc48ffa7SToby Isaac ierr = PetscBLASIntCast(c->A->rmap->n,&cm);CHKERRQ(ierr); 1814cc48ffa7SToby Isaac recvisfrom = rank; 1815cc48ffa7SToby Isaac for (i = 0; i < size; i++) { 1816cc48ffa7SToby Isaac /* we have finished receiving in sending, bufs can be read/modified */ 1817cc48ffa7SToby Isaac PetscInt nextrecvisfrom = (recvisfrom + 1) % size; /* which process the next recvbuf will originate on */ 1818cc48ffa7SToby Isaac PetscInt nextbn = ranges[nextrecvisfrom + 1] - ranges[nextrecvisfrom]; 1819cc48ffa7SToby Isaac 1820cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 1821cc48ffa7SToby Isaac /* start the cyclic sends from sendbuf, to recvbuf (which will switch to sendbuf) */ 1822cc48ffa7SToby Isaac sendsiz = cK * bn; 1823cc48ffa7SToby Isaac recvsiz = cK * nextbn; 1824cc48ffa7SToby Isaac recvbuf = (i & 1) ? abt->buf[0] : abt->buf[1]; 1825cc48ffa7SToby Isaac ierr = MPI_Isend(sendbuf, sendsiz, MPIU_SCALAR, sendto, abt->tag, comm, &reqs[0]);CHKERRQ(ierr); 1826cc48ffa7SToby Isaac ierr = MPI_Irecv(recvbuf, recvsiz, MPIU_SCALAR, recvfrom, abt->tag, comm, &reqs[1]);CHKERRQ(ierr); 1827cc48ffa7SToby Isaac } 1828cc48ffa7SToby Isaac 1829cc48ffa7SToby Isaac /* local aseq * sendbuf^T */ 1830cc48ffa7SToby Isaac ierr = PetscBLASIntCast(ranges[recvisfrom + 1] - ranges[recvisfrom], &cn);CHKERRQ(ierr); 1831cc48ffa7SToby Isaac carray = &cseq->v[cseq->lda * ranges[recvisfrom]]; 1832cc48ffa7SToby Isaac PetscStackCallBLAS("BLASgemm",BLASgemm_("N","T",&cm,&cn,&ck,&_DOne,aseq->v,&aseq->lda,sendbuf,&cn,&_DZero,carray,&cseq->lda)); 1833cc48ffa7SToby Isaac 1834cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 1835cc48ffa7SToby Isaac /* wait for the sends and receives to complete, swap sendbuf and recvbuf */ 1836cc48ffa7SToby Isaac ierr = MPI_Waitall(2, reqs, MPI_STATUSES_IGNORE);CHKERRQ(ierr); 1837cc48ffa7SToby Isaac } 1838cc48ffa7SToby Isaac bn = nextbn; 1839cc48ffa7SToby Isaac recvisfrom = nextrecvisfrom; 1840cc48ffa7SToby Isaac sendbuf = recvbuf; 1841cc48ffa7SToby Isaac } 1842cc48ffa7SToby Isaac PetscFunctionReturn(0); 1843cc48ffa7SToby Isaac } 1844cc48ffa7SToby Isaac 1845faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(Mat A, Mat B, Mat C) 1846faa55883SToby Isaac { 1847faa55883SToby Isaac Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 1848faa55883SToby Isaac Mat_SeqDense *aseq=(Mat_SeqDense*)(a->A)->data, *bseq=(Mat_SeqDense*)(b->A)->data; 1849faa55883SToby Isaac Mat_SeqDense *cseq=(Mat_SeqDense*)(c->A)->data; 1850faa55883SToby Isaac Mat_MatTransMultDense *abt = c->abtdense; 1851faa55883SToby Isaac PetscErrorCode ierr; 1852faa55883SToby Isaac MPI_Comm comm; 1853faa55883SToby Isaac PetscMPIInt rank,size; 1854faa55883SToby Isaac PetscScalar *sendbuf, *recvbuf; 1855faa55883SToby Isaac PetscInt i,cK=A->cmap->N,k,j,bn; 1856faa55883SToby Isaac PetscScalar _DOne=1.0,_DZero=0.0; 1857faa55883SToby Isaac PetscBLASInt cm, cn, ck; 1858faa55883SToby Isaac 1859faa55883SToby Isaac PetscFunctionBegin; 1860faa55883SToby Isaac ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 1861faa55883SToby Isaac ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 1862faa55883SToby Isaac ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1863faa55883SToby Isaac 1864faa55883SToby Isaac /* copy transpose of B into buf[0] */ 1865faa55883SToby Isaac bn = B->rmap->n; 1866faa55883SToby Isaac sendbuf = abt->buf[0]; 1867faa55883SToby Isaac recvbuf = abt->buf[1]; 1868faa55883SToby Isaac for (k = 0, j = 0; j < bn; j++) { 1869faa55883SToby Isaac for (i = 0; i < cK; i++, k++) { 1870faa55883SToby Isaac sendbuf[k] = bseq->v[i * bseq->lda + j]; 1871faa55883SToby Isaac } 1872faa55883SToby Isaac } 1873faa55883SToby Isaac ierr = MPI_Allgatherv(sendbuf, bn * cK, MPIU_SCALAR, recvbuf, abt->recvcounts, abt->recvdispls, MPIU_SCALAR, comm);CHKERRQ(ierr); 1874faa55883SToby Isaac ierr = PetscBLASIntCast(cK,&ck);CHKERRQ(ierr); 1875faa55883SToby Isaac ierr = PetscBLASIntCast(c->A->rmap->n,&cm);CHKERRQ(ierr); 1876faa55883SToby Isaac ierr = PetscBLASIntCast(c->A->cmap->n,&cn);CHKERRQ(ierr); 1877faa55883SToby Isaac PetscStackCallBLAS("BLASgemm",BLASgemm_("N","N",&cm,&cn,&ck,&_DOne,aseq->v,&aseq->lda,recvbuf,&ck,&_DZero,cseq->v,&cseq->lda)); 1878faa55883SToby Isaac PetscFunctionReturn(0); 1879faa55883SToby Isaac } 1880faa55883SToby Isaac 1881faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat A, Mat B, Mat C) 1882faa55883SToby Isaac { 1883faa55883SToby Isaac Mat_MPIDense *c=(Mat_MPIDense*)C->data; 1884faa55883SToby Isaac Mat_MatTransMultDense *abt = c->abtdense; 1885faa55883SToby Isaac PetscErrorCode ierr; 1886faa55883SToby Isaac 1887faa55883SToby Isaac PetscFunctionBegin; 1888faa55883SToby Isaac switch (abt->alg) { 1889faa55883SToby Isaac case 1: 1890faa55883SToby Isaac ierr = MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(A, B, C);CHKERRQ(ierr); 1891faa55883SToby Isaac break; 1892faa55883SToby Isaac default: 1893faa55883SToby Isaac ierr = MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(A, B, C);CHKERRQ(ierr); 1894faa55883SToby Isaac break; 1895faa55883SToby Isaac } 1896faa55883SToby Isaac PetscFunctionReturn(0); 1897faa55883SToby Isaac } 1898faa55883SToby Isaac 1899320f2790SHong Zhang PetscErrorCode MatDestroy_MatMatMult_MPIDense_MPIDense(Mat A) 1900320f2790SHong Zhang { 1901320f2790SHong Zhang PetscErrorCode ierr; 1902320f2790SHong Zhang Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1903320f2790SHong Zhang Mat_MatMultDense *ab = a->abdense; 1904320f2790SHong Zhang 1905320f2790SHong Zhang PetscFunctionBegin; 1906320f2790SHong Zhang ierr = MatDestroy(&ab->Ce);CHKERRQ(ierr); 1907320f2790SHong Zhang ierr = MatDestroy(&ab->Ae);CHKERRQ(ierr); 1908320f2790SHong Zhang ierr = MatDestroy(&ab->Be);CHKERRQ(ierr); 1909320f2790SHong Zhang 1910320f2790SHong Zhang ierr = (ab->destroy)(A);CHKERRQ(ierr); 1911320f2790SHong Zhang ierr = PetscFree(ab);CHKERRQ(ierr); 1912320f2790SHong Zhang PetscFunctionReturn(0); 1913320f2790SHong Zhang } 1914320f2790SHong Zhang 19155242a7b1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 1916320f2790SHong Zhang PetscErrorCode MatMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 1917320f2790SHong Zhang { 1918320f2790SHong Zhang PetscErrorCode ierr; 1919320f2790SHong Zhang Mat_MPIDense *c=(Mat_MPIDense*)C->data; 1920320f2790SHong Zhang Mat_MatMultDense *ab=c->abdense; 1921320f2790SHong Zhang 1922320f2790SHong Zhang PetscFunctionBegin; 1923de0a22f0SHong Zhang ierr = MatConvert_MPIDense_Elemental(A,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Ae);CHKERRQ(ierr); 1924de0a22f0SHong Zhang ierr = MatConvert_MPIDense_Elemental(B,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Be);CHKERRQ(ierr); 19254222ddf1SHong Zhang ierr = MatMatMultNumeric_Elemental(ab->Ae,ab->Be,ab->Ce);CHKERRQ(ierr); 1926de0a22f0SHong Zhang ierr = MatConvert(ab->Ce,MATMPIDENSE,MAT_REUSE_MATRIX,&C);CHKERRQ(ierr); 1927320f2790SHong Zhang PetscFunctionReturn(0); 1928320f2790SHong Zhang } 1929320f2790SHong Zhang 19304222ddf1SHong Zhang PetscErrorCode MatMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat C) 1931320f2790SHong Zhang { 1932320f2790SHong Zhang PetscErrorCode ierr; 1933320f2790SHong Zhang Mat Ae,Be,Ce; 1934320f2790SHong Zhang Mat_MPIDense *c; 1935320f2790SHong Zhang Mat_MatMultDense *ab; 1936320f2790SHong Zhang 1937320f2790SHong Zhang PetscFunctionBegin; 19384222ddf1SHong Zhang /* check local size of A and B */ 1939320f2790SHong Zhang if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend) { 1940378336b6SHong Zhang SETERRQ4(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != B (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 1941320f2790SHong Zhang } 1942320f2790SHong Zhang 19434222ddf1SHong Zhang /* create elemental matrices Ae and Be */ 19444222ddf1SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)A), &Ae);CHKERRQ(ierr); 19454222ddf1SHong Zhang ierr = MatSetSizes(Ae,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 19464222ddf1SHong Zhang ierr = MatSetType(Ae,MATELEMENTAL);CHKERRQ(ierr); 19474222ddf1SHong Zhang ierr = MatSetUp(Ae);CHKERRQ(ierr); 19484222ddf1SHong Zhang ierr = MatSetOption(Ae,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 1949320f2790SHong Zhang 19504222ddf1SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)B), &Be);CHKERRQ(ierr); 19514222ddf1SHong Zhang ierr = MatSetSizes(Be,PETSC_DECIDE,PETSC_DECIDE,B->rmap->N,B->cmap->N);CHKERRQ(ierr); 19524222ddf1SHong Zhang ierr = MatSetType(Be,MATELEMENTAL);CHKERRQ(ierr); 19534222ddf1SHong Zhang ierr = MatSetUp(Be);CHKERRQ(ierr); 19544222ddf1SHong Zhang ierr = MatSetOption(Be,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 1955320f2790SHong Zhang 19564222ddf1SHong Zhang /* compute symbolic Ce = Ae*Be */ 19574222ddf1SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)C),&Ce);CHKERRQ(ierr); 19584222ddf1SHong Zhang ierr = MatMatMultSymbolic_Elemental(Ae,Be,fill,Ce);CHKERRQ(ierr); 19594222ddf1SHong Zhang 19604222ddf1SHong Zhang /* setup C */ 19614222ddf1SHong Zhang ierr = MatSetSizes(C,A->rmap->n,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 19624222ddf1SHong Zhang ierr = MatSetType(C,MATDENSE);CHKERRQ(ierr); 19634222ddf1SHong Zhang ierr = MatSetUp(C);CHKERRQ(ierr); 1964320f2790SHong Zhang 1965320f2790SHong Zhang /* create data structure for reuse Cdense */ 1966320f2790SHong Zhang ierr = PetscNew(&ab);CHKERRQ(ierr); 19674222ddf1SHong Zhang c = (Mat_MPIDense*)C->data; 1968320f2790SHong Zhang c->abdense = ab; 1969320f2790SHong Zhang 1970320f2790SHong Zhang ab->Ae = Ae; 1971320f2790SHong Zhang ab->Be = Be; 1972320f2790SHong Zhang ab->Ce = Ce; 19734222ddf1SHong Zhang ab->destroy = C->ops->destroy; 19744222ddf1SHong Zhang C->ops->destroy = MatDestroy_MatMatMult_MPIDense_MPIDense; 19754222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIDense; 19764222ddf1SHong Zhang C->ops->productnumeric = MatProductNumeric_AB; 1977320f2790SHong Zhang PetscFunctionReturn(0); 1978320f2790SHong Zhang } 19794222ddf1SHong Zhang #endif 19804222ddf1SHong Zhang /* ----------------------------------------------- */ 19814222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 19824222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_AB(Mat C) 1983320f2790SHong Zhang { 1984320f2790SHong Zhang PetscFunctionBegin; 19854222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIDense; 19864222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 19874222ddf1SHong Zhang C->ops->productnumeric = MatProductNumeric_AB; 1988320f2790SHong Zhang PetscFunctionReturn(0); 1989320f2790SHong Zhang } 19905242a7b1SHong Zhang #endif 199186aefd0dSHong Zhang 19924222ddf1SHong Zhang static PetscErrorCode MatProductSymbolic_AtB_MPIDense(Mat C) 19934222ddf1SHong Zhang { 19944222ddf1SHong Zhang PetscErrorCode ierr; 19954222ddf1SHong Zhang Mat_Product *product = C->product; 19964222ddf1SHong Zhang 19974222ddf1SHong Zhang PetscFunctionBegin; 19984222ddf1SHong Zhang ierr = MatTransposeMatMultSymbolic_MPIDense_MPIDense(product->A,product->B,product->fill,C);CHKERRQ(ierr); 19994222ddf1SHong Zhang C->ops->productnumeric = MatProductNumeric_AtB; 20004222ddf1SHong Zhang C->ops->transposematmultnumeric = MatTransposeMatMultNumeric_MPIDense_MPIDense; 20014222ddf1SHong Zhang PetscFunctionReturn(0); 20024222ddf1SHong Zhang } 20034222ddf1SHong Zhang 20044222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_AtB(Mat C) 20054222ddf1SHong Zhang { 20064222ddf1SHong Zhang Mat_Product *product = C->product; 20074222ddf1SHong Zhang Mat A = product->A,B=product->B; 20084222ddf1SHong Zhang 20094222ddf1SHong Zhang PetscFunctionBegin; 20104222ddf1SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) 20114222ddf1SHong Zhang SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, (%D, %D) != (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 20124222ddf1SHong Zhang 20134222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AtB_MPIDense; 20144222ddf1SHong Zhang PetscFunctionReturn(0); 20154222ddf1SHong Zhang } 20164222ddf1SHong Zhang 20174222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_ABt(Mat C) 20184222ddf1SHong Zhang { 20194222ddf1SHong Zhang PetscErrorCode ierr; 20204222ddf1SHong Zhang Mat_Product *product = C->product; 20214222ddf1SHong Zhang const char *algTypes[2] = {"allgatherv","cyclic"}; 20224222ddf1SHong Zhang PetscInt alg,nalg = 2; 20234222ddf1SHong Zhang PetscBool flg = PETSC_FALSE; 20244222ddf1SHong Zhang 20254222ddf1SHong Zhang PetscFunctionBegin; 20264222ddf1SHong Zhang /* Set default algorithm */ 20274222ddf1SHong Zhang alg = 0; /* default is allgatherv */ 20284222ddf1SHong Zhang ierr = PetscStrcmp(product->alg,"default",&flg);CHKERRQ(ierr); 20294222ddf1SHong Zhang if (flg) { 20304222ddf1SHong Zhang ierr = MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]);CHKERRQ(ierr); 20314222ddf1SHong Zhang } 20324222ddf1SHong Zhang 20334222ddf1SHong Zhang /* Get runtime option */ 20344222ddf1SHong Zhang if (product->api_user) { 20354222ddf1SHong Zhang ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatMatTransposeMult","Mat");CHKERRQ(ierr); 20364222ddf1SHong Zhang ierr = PetscOptionsEList("-matmattransmult_mpidense_mpidense_via","Algorithmic approach","MatMatTransposeMult",algTypes,nalg,algTypes[alg],&alg,&flg);CHKERRQ(ierr); 20374222ddf1SHong Zhang ierr = PetscOptionsEnd();CHKERRQ(ierr); 20384222ddf1SHong Zhang } else { 20394222ddf1SHong Zhang ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatProduct_ABt","Mat");CHKERRQ(ierr); 20404222ddf1SHong Zhang ierr = PetscOptionsEList("-matproduct_abt_mpidense_mpidense_via","Algorithmic approach","MatProduct_ABt",algTypes,nalg,algTypes[alg],&alg,&flg);CHKERRQ(ierr); 20414222ddf1SHong Zhang ierr = PetscOptionsEnd();CHKERRQ(ierr); 20424222ddf1SHong Zhang } 20434222ddf1SHong Zhang if (flg) { 20444222ddf1SHong Zhang ierr = MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]);CHKERRQ(ierr); 20454222ddf1SHong Zhang } 20464222ddf1SHong Zhang 20474222ddf1SHong Zhang C->ops->mattransposemultsymbolic = MatMatTransposeMultSymbolic_MPIDense_MPIDense; 20484222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_ABt; 20494222ddf1SHong Zhang C->ops->productnumeric = MatProductNumeric_ABt; 20504222ddf1SHong Zhang PetscFunctionReturn(0); 20514222ddf1SHong Zhang } 20524222ddf1SHong Zhang 20534222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense(Mat C) 20544222ddf1SHong Zhang { 20554222ddf1SHong Zhang PetscErrorCode ierr; 20564222ddf1SHong Zhang Mat_Product *product = C->product; 20574222ddf1SHong Zhang 20584222ddf1SHong Zhang PetscFunctionBegin; 20590e1ed72eSHong Zhang ierr = MatSetType(C,MATMPIDENSE);CHKERRQ(ierr); 20604222ddf1SHong Zhang switch (product->type) { 20614222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 20624222ddf1SHong Zhang case MATPRODUCT_AB: 20634222ddf1SHong Zhang ierr = MatProductSetFromOptions_MPIDense_AB(C);CHKERRQ(ierr); 20644222ddf1SHong Zhang break; 20654222ddf1SHong Zhang #endif 20664222ddf1SHong Zhang case MATPRODUCT_AtB: 20674222ddf1SHong Zhang ierr = MatProductSetFromOptions_MPIDense_AtB(C);CHKERRQ(ierr); 20684222ddf1SHong Zhang break; 20694222ddf1SHong Zhang case MATPRODUCT_ABt: 20704222ddf1SHong Zhang ierr = MatProductSetFromOptions_MPIDense_ABt(C);CHKERRQ(ierr); 20714222ddf1SHong Zhang break; 2072544a5e07SHong Zhang default: SETERRQ1(PetscObjectComm((PetscObject)C),PETSC_ERR_SUP,"MatProduct type %s is not supported for MPIDense and MPIDense matrices",MatProductTypes[product->type]); 20734222ddf1SHong Zhang } 20744222ddf1SHong Zhang PetscFunctionReturn(0); 20754222ddf1SHong Zhang } 2076