1be1d678aSKris Buschelman 2ed3cc1f0SBarry Smith /* 3ed3cc1f0SBarry Smith Basic functions for basic parallel dense matrices. 4ed3cc1f0SBarry Smith */ 5ed3cc1f0SBarry Smith 604fea9ffSBarry Smith 7c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h> /*I "petscmat.h" I*/ 88949adfdSHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 9baa3c1c6SHong Zhang #include <petscblaslapack.h> 108965ea79SLois Curfman McInnes 11ba8c8a56SBarry Smith #undef __FUNCT__ 12ab92ecdeSBarry Smith #define __FUNCT__ "MatDenseGetLocalMatrix" 13ab92ecdeSBarry Smith /*@ 14ab92ecdeSBarry Smith 15ab92ecdeSBarry Smith MatDenseGetLocalMatrix - For a MATMPIDENSE or MATSEQDENSE matrix returns the sequential 16ab92ecdeSBarry Smith matrix that represents the operator. For sequential matrices it returns itself. 17ab92ecdeSBarry Smith 18ab92ecdeSBarry Smith Input Parameter: 19ab92ecdeSBarry Smith . A - the Seq or MPI dense matrix 20ab92ecdeSBarry Smith 21ab92ecdeSBarry Smith Output Parameter: 22ab92ecdeSBarry Smith . B - the inner matrix 23ab92ecdeSBarry Smith 248e6c10adSSatish Balay Level: intermediate 258e6c10adSSatish Balay 26ab92ecdeSBarry Smith @*/ 27ab92ecdeSBarry Smith PetscErrorCode MatDenseGetLocalMatrix(Mat A,Mat *B) 28ab92ecdeSBarry Smith { 29ab92ecdeSBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 30ab92ecdeSBarry Smith PetscErrorCode ierr; 31ace3abfcSBarry Smith PetscBool flg; 32ab92ecdeSBarry Smith 33ab92ecdeSBarry Smith PetscFunctionBegin; 34251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIDENSE,&flg);CHKERRQ(ierr); 352205254eSKarl Rupp if (flg) *B = mat->A; 362205254eSKarl Rupp else *B = A; 37ab92ecdeSBarry Smith PetscFunctionReturn(0); 38ab92ecdeSBarry Smith } 39ab92ecdeSBarry Smith 40ab92ecdeSBarry Smith #undef __FUNCT__ 41ba8c8a56SBarry Smith #define __FUNCT__ "MatGetRow_MPIDense" 42ba8c8a56SBarry Smith PetscErrorCode MatGetRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 43ba8c8a56SBarry Smith { 44ba8c8a56SBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 45ba8c8a56SBarry Smith PetscErrorCode ierr; 46d0f46423SBarry Smith PetscInt lrow,rstart = A->rmap->rstart,rend = A->rmap->rend; 47ba8c8a56SBarry Smith 48ba8c8a56SBarry Smith PetscFunctionBegin; 49e7e72b3dSBarry Smith if (row < rstart || row >= rend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows"); 50ba8c8a56SBarry Smith lrow = row - rstart; 51ba8c8a56SBarry Smith ierr = MatGetRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v);CHKERRQ(ierr); 52ba8c8a56SBarry Smith PetscFunctionReturn(0); 53ba8c8a56SBarry Smith } 54ba8c8a56SBarry Smith 55ba8c8a56SBarry Smith #undef __FUNCT__ 56ba8c8a56SBarry Smith #define __FUNCT__ "MatRestoreRow_MPIDense" 57ba8c8a56SBarry Smith PetscErrorCode MatRestoreRow_MPIDense(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 58ba8c8a56SBarry Smith { 59ba8c8a56SBarry Smith PetscErrorCode ierr; 60ba8c8a56SBarry Smith 61ba8c8a56SBarry Smith PetscFunctionBegin; 62ba8c8a56SBarry Smith if (idx) {ierr = PetscFree(*idx);CHKERRQ(ierr);} 63ba8c8a56SBarry Smith if (v) {ierr = PetscFree(*v);CHKERRQ(ierr);} 64ba8c8a56SBarry Smith PetscFunctionReturn(0); 65ba8c8a56SBarry Smith } 66ba8c8a56SBarry Smith 674a2ae208SSatish Balay #undef __FUNCT__ 684a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIDense" 6911bd1e4dSLisandro Dalcin PetscErrorCode MatGetDiagonalBlock_MPIDense(Mat A,Mat *a) 700de54da6SSatish Balay { 710de54da6SSatish Balay Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 726849ba73SBarry Smith PetscErrorCode ierr; 73d0f46423SBarry Smith PetscInt m = A->rmap->n,rstart = A->rmap->rstart; 7487828ca2SBarry Smith PetscScalar *array; 750de54da6SSatish Balay MPI_Comm comm; 7611bd1e4dSLisandro Dalcin Mat B; 770de54da6SSatish Balay 780de54da6SSatish Balay PetscFunctionBegin; 79e32f2f54SBarry Smith if (A->rmap->N != A->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only square matrices supported."); 800de54da6SSatish Balay 8111bd1e4dSLisandro Dalcin ierr = PetscObjectQuery((PetscObject)A,"DiagonalBlock",(PetscObject*)&B);CHKERRQ(ierr); 8211bd1e4dSLisandro Dalcin if (!B) { 830de54da6SSatish Balay ierr = PetscObjectGetComm((PetscObject)(mdn->A),&comm);CHKERRQ(ierr); 8411bd1e4dSLisandro Dalcin ierr = MatCreate(comm,&B);CHKERRQ(ierr); 8511bd1e4dSLisandro Dalcin ierr = MatSetSizes(B,m,m,m,m);CHKERRQ(ierr); 8611bd1e4dSLisandro Dalcin ierr = MatSetType(B,((PetscObject)mdn->A)->type_name);CHKERRQ(ierr); 878c778c55SBarry Smith ierr = MatDenseGetArray(mdn->A,&array);CHKERRQ(ierr); 8811bd1e4dSLisandro Dalcin ierr = MatSeqDenseSetPreallocation(B,array+m*rstart);CHKERRQ(ierr); 898c778c55SBarry Smith ierr = MatDenseRestoreArray(mdn->A,&array);CHKERRQ(ierr); 9011bd1e4dSLisandro Dalcin ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 9111bd1e4dSLisandro Dalcin ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 9211bd1e4dSLisandro Dalcin ierr = PetscObjectCompose((PetscObject)A,"DiagonalBlock",(PetscObject)B);CHKERRQ(ierr); 9311bd1e4dSLisandro Dalcin *a = B; 9411bd1e4dSLisandro Dalcin ierr = MatDestroy(&B);CHKERRQ(ierr); 952205254eSKarl Rupp } else *a = B; 960de54da6SSatish Balay PetscFunctionReturn(0); 970de54da6SSatish Balay } 980de54da6SSatish Balay 994a2ae208SSatish Balay #undef __FUNCT__ 1004a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIDense" 10113f74950SBarry Smith PetscErrorCode MatSetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],const PetscScalar v[],InsertMode addv) 1028965ea79SLois Curfman McInnes { 10339b7565bSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)mat->data; 104dfbe8321SBarry Smith PetscErrorCode ierr; 105d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 106ace3abfcSBarry Smith PetscBool roworiented = A->roworiented; 1078965ea79SLois Curfman McInnes 1083a40ed3dSBarry Smith PetscFunctionBegin; 1098965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 1105ef9f2a5SBarry Smith if (idxm[i] < 0) continue; 111e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 1128965ea79SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 1138965ea79SLois Curfman McInnes row = idxm[i] - rstart; 11439b7565bSBarry Smith if (roworiented) { 11539b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv);CHKERRQ(ierr); 1163a40ed3dSBarry Smith } else { 1178965ea79SLois Curfman McInnes for (j=0; j<n; j++) { 1185ef9f2a5SBarry Smith if (idxn[j] < 0) continue; 119e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 12039b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv);CHKERRQ(ierr); 12139b7565bSBarry Smith } 1228965ea79SLois Curfman McInnes } 1232205254eSKarl Rupp } else if (!A->donotstash) { 1245080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 12539b7565bSBarry Smith if (roworiented) { 126b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,idxm[i],n,idxn,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 127d36fbae8SSatish Balay } else { 128b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,idxm[i],n,idxn,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 12939b7565bSBarry Smith } 130b49de8d1SLois Curfman McInnes } 131b49de8d1SLois Curfman McInnes } 1323a40ed3dSBarry Smith PetscFunctionReturn(0); 133b49de8d1SLois Curfman McInnes } 134b49de8d1SLois Curfman McInnes 1354a2ae208SSatish Balay #undef __FUNCT__ 1364a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIDense" 13713f74950SBarry Smith PetscErrorCode MatGetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 138b49de8d1SLois Curfman McInnes { 139b49de8d1SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 140dfbe8321SBarry Smith PetscErrorCode ierr; 141d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 142b49de8d1SLois Curfman McInnes 1433a40ed3dSBarry Smith PetscFunctionBegin; 144b49de8d1SLois Curfman McInnes for (i=0; i<m; i++) { 145e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); */ 146e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 147b49de8d1SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 148b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 149b49de8d1SLois Curfman McInnes for (j=0; j<n; j++) { 150e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); */ 151e7e72b3dSBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 152b49de8d1SLois Curfman McInnes ierr = MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j);CHKERRQ(ierr); 153b49de8d1SLois Curfman McInnes } 154e7e72b3dSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 1558965ea79SLois Curfman McInnes } 1563a40ed3dSBarry Smith PetscFunctionReturn(0); 1578965ea79SLois Curfman McInnes } 1588965ea79SLois Curfman McInnes 1594a2ae208SSatish Balay #undef __FUNCT__ 1608c778c55SBarry Smith #define __FUNCT__ "MatDenseGetArray_MPIDense" 1618c778c55SBarry Smith PetscErrorCode MatDenseGetArray_MPIDense(Mat A,PetscScalar *array[]) 162ff14e315SSatish Balay { 163ff14e315SSatish Balay Mat_MPIDense *a = (Mat_MPIDense*)A->data; 164dfbe8321SBarry Smith PetscErrorCode ierr; 165ff14e315SSatish Balay 1663a40ed3dSBarry Smith PetscFunctionBegin; 1678c778c55SBarry Smith ierr = MatDenseGetArray(a->A,array);CHKERRQ(ierr); 1683a40ed3dSBarry Smith PetscFunctionReturn(0); 169ff14e315SSatish Balay } 170ff14e315SSatish Balay 1714a2ae208SSatish Balay #undef __FUNCT__ 1724a2ae208SSatish Balay #define __FUNCT__ "MatGetSubMatrix_MPIDense" 1734aa3045dSJed Brown static PetscErrorCode MatGetSubMatrix_MPIDense(Mat A,IS isrow,IS iscol,MatReuse scall,Mat *B) 174ca3fa75bSLois Curfman McInnes { 175ca3fa75bSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data,*newmatd; 176ca3fa75bSLois Curfman McInnes Mat_SeqDense *lmat = (Mat_SeqDense*)mat->A->data; 1776849ba73SBarry Smith PetscErrorCode ierr; 1784aa3045dSJed Brown PetscInt i,j,rstart,rend,nrows,ncols,Ncols,nlrows,nlcols; 1795d0c19d7SBarry Smith const PetscInt *irow,*icol; 18087828ca2SBarry Smith PetscScalar *av,*bv,*v = lmat->v; 181ca3fa75bSLois Curfman McInnes Mat newmat; 1824aa3045dSJed Brown IS iscol_local; 183ca3fa75bSLois Curfman McInnes 184ca3fa75bSLois Curfman McInnes PetscFunctionBegin; 1854aa3045dSJed Brown ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 186ca3fa75bSLois Curfman McInnes ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr); 1874aa3045dSJed Brown ierr = ISGetIndices(iscol_local,&icol);CHKERRQ(ierr); 188b9b97703SBarry Smith ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr); 189b9b97703SBarry Smith ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr); 1904aa3045dSJed Brown ierr = ISGetSize(iscol,&Ncols);CHKERRQ(ierr); /* global number of columns, size of iscol_local */ 191ca3fa75bSLois Curfman McInnes 192ca3fa75bSLois Curfman McInnes /* No parallel redistribution currently supported! Should really check each index set 1937eba5e9cSLois Curfman McInnes to comfirm that it is OK. ... Currently supports only submatrix same partitioning as 1947eba5e9cSLois Curfman McInnes original matrix! */ 195ca3fa75bSLois Curfman McInnes 196ca3fa75bSLois Curfman McInnes ierr = MatGetLocalSize(A,&nlrows,&nlcols);CHKERRQ(ierr); 1977eba5e9cSLois Curfman McInnes ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr); 198ca3fa75bSLois Curfman McInnes 199ca3fa75bSLois Curfman McInnes /* Check submatrix call */ 200ca3fa75bSLois Curfman McInnes if (scall == MAT_REUSE_MATRIX) { 201e32f2f54SBarry Smith /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */ 2027eba5e9cSLois Curfman McInnes /* Really need to test rows and column sizes! */ 203ca3fa75bSLois Curfman McInnes newmat = *B; 204ca3fa75bSLois Curfman McInnes } else { 205ca3fa75bSLois Curfman McInnes /* Create and fill new matrix */ 206ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&newmat);CHKERRQ(ierr); 2074aa3045dSJed Brown ierr = MatSetSizes(newmat,nrows,ncols,PETSC_DECIDE,Ncols);CHKERRQ(ierr); 2087adad957SLisandro Dalcin ierr = MatSetType(newmat,((PetscObject)A)->type_name);CHKERRQ(ierr); 2090298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr); 210ca3fa75bSLois Curfman McInnes } 211ca3fa75bSLois Curfman McInnes 212ca3fa75bSLois Curfman McInnes /* Now extract the data pointers and do the copy, column at a time */ 213ca3fa75bSLois Curfman McInnes newmatd = (Mat_MPIDense*)newmat->data; 214ca3fa75bSLois Curfman McInnes bv = ((Mat_SeqDense*)newmatd->A->data)->v; 215ca3fa75bSLois Curfman McInnes 2164aa3045dSJed Brown for (i=0; i<Ncols; i++) { 21725a33276SHong Zhang av = v + ((Mat_SeqDense*)mat->A->data)->lda*icol[i]; 218ca3fa75bSLois Curfman McInnes for (j=0; j<nrows; j++) { 2197eba5e9cSLois Curfman McInnes *bv++ = av[irow[j] - rstart]; 220ca3fa75bSLois Curfman McInnes } 221ca3fa75bSLois Curfman McInnes } 222ca3fa75bSLois Curfman McInnes 223ca3fa75bSLois Curfman McInnes /* Assemble the matrices so that the correct flags are set */ 224ca3fa75bSLois Curfman McInnes ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 225ca3fa75bSLois Curfman McInnes ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 226ca3fa75bSLois Curfman McInnes 227ca3fa75bSLois Curfman McInnes /* Free work space */ 228ca3fa75bSLois Curfman McInnes ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr); 2295bdf786aSShri Abhyankar ierr = ISRestoreIndices(iscol_local,&icol);CHKERRQ(ierr); 23032bb1f2dSLisandro Dalcin ierr = ISDestroy(&iscol_local);CHKERRQ(ierr); 231ca3fa75bSLois Curfman McInnes *B = newmat; 232ca3fa75bSLois Curfman McInnes PetscFunctionReturn(0); 233ca3fa75bSLois Curfman McInnes } 234ca3fa75bSLois Curfman McInnes 2354a2ae208SSatish Balay #undef __FUNCT__ 2368c778c55SBarry Smith #define __FUNCT__ "MatDenseRestoreArray_MPIDense" 2378c778c55SBarry Smith PetscErrorCode MatDenseRestoreArray_MPIDense(Mat A,PetscScalar *array[]) 238ff14e315SSatish Balay { 23973a71a0fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 24073a71a0fSBarry Smith PetscErrorCode ierr; 24173a71a0fSBarry Smith 2423a40ed3dSBarry Smith PetscFunctionBegin; 2438c778c55SBarry Smith ierr = MatDenseRestoreArray(a->A,array);CHKERRQ(ierr); 2443a40ed3dSBarry Smith PetscFunctionReturn(0); 245ff14e315SSatish Balay } 246ff14e315SSatish Balay 2474a2ae208SSatish Balay #undef __FUNCT__ 2484a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIDense" 249dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode) 2508965ea79SLois Curfman McInnes { 25139ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 252ce94432eSBarry Smith MPI_Comm comm; 253dfbe8321SBarry Smith PetscErrorCode ierr; 25413f74950SBarry Smith PetscInt nstash,reallocs; 2558965ea79SLois Curfman McInnes InsertMode addv; 2568965ea79SLois Curfman McInnes 2573a40ed3dSBarry Smith PetscFunctionBegin; 258ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)mat,&comm);CHKERRQ(ierr); 2598965ea79SLois Curfman McInnes /* make sure all processors are either in INSERTMODE or ADDMODE */ 260b2566f29SBarry Smith ierr = MPIU_Allreduce((PetscEnum*)&mat->insertmode,(PetscEnum*)&addv,1,MPIU_ENUM,MPI_BOR,comm);CHKERRQ(ierr); 261ce94432eSBarry Smith if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ARG_WRONGSTATE,"Cannot mix adds/inserts on different procs"); 262e0fa3b82SLois Curfman McInnes mat->insertmode = addv; /* in case this processor had no cache */ 2638965ea79SLois Curfman McInnes 264d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 2658798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 266ae15b995SBarry Smith ierr = PetscInfo2(mdn->A,"Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 2673a40ed3dSBarry Smith PetscFunctionReturn(0); 2688965ea79SLois Curfman McInnes } 2698965ea79SLois Curfman McInnes 2704a2ae208SSatish Balay #undef __FUNCT__ 2714a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIDense" 272dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode) 2738965ea79SLois Curfman McInnes { 27439ddd567SLois Curfman McInnes Mat_MPIDense *mdn=(Mat_MPIDense*)mat->data; 2756849ba73SBarry Smith PetscErrorCode ierr; 27613f74950SBarry Smith PetscInt i,*row,*col,flg,j,rstart,ncols; 27713f74950SBarry Smith PetscMPIInt n; 27887828ca2SBarry Smith PetscScalar *val; 2798965ea79SLois Curfman McInnes 2803a40ed3dSBarry Smith PetscFunctionBegin; 2818965ea79SLois Curfman McInnes /* wait on receives */ 2827ef1d9bdSSatish Balay while (1) { 2838798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 2847ef1d9bdSSatish Balay if (!flg) break; 2858965ea79SLois Curfman McInnes 2867ef1d9bdSSatish Balay for (i=0; i<n;) { 2877ef1d9bdSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 2882205254eSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 2892205254eSKarl Rupp if (row[j] != rstart) break; 2902205254eSKarl Rupp } 2917ef1d9bdSSatish Balay if (j < n) ncols = j-i; 2927ef1d9bdSSatish Balay else ncols = n-i; 2937ef1d9bdSSatish Balay /* Now assemble all these values with a single function call */ 2944b4eb8d3SJed Brown ierr = MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr); 2957ef1d9bdSSatish Balay i = j; 2968965ea79SLois Curfman McInnes } 2977ef1d9bdSSatish Balay } 2988798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 2998965ea79SLois Curfman McInnes 30039ddd567SLois Curfman McInnes ierr = MatAssemblyBegin(mdn->A,mode);CHKERRQ(ierr); 30139ddd567SLois Curfman McInnes ierr = MatAssemblyEnd(mdn->A,mode);CHKERRQ(ierr); 3028965ea79SLois Curfman McInnes 3036d4a8577SBarry Smith if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 30439ddd567SLois Curfman McInnes ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 3058965ea79SLois Curfman McInnes } 3063a40ed3dSBarry Smith PetscFunctionReturn(0); 3078965ea79SLois Curfman McInnes } 3088965ea79SLois Curfman McInnes 3094a2ae208SSatish Balay #undef __FUNCT__ 3104a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIDense" 311dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIDense(Mat A) 3128965ea79SLois Curfman McInnes { 313dfbe8321SBarry Smith PetscErrorCode ierr; 31439ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 3153a40ed3dSBarry Smith 3163a40ed3dSBarry Smith PetscFunctionBegin; 3173a40ed3dSBarry Smith ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 3183a40ed3dSBarry Smith PetscFunctionReturn(0); 3198965ea79SLois Curfman McInnes } 3208965ea79SLois Curfman McInnes 3218965ea79SLois Curfman McInnes /* the code does not do the diagonal entries correctly unless the 3228965ea79SLois Curfman McInnes matrix is square and the column and row owerships are identical. 3238965ea79SLois Curfman McInnes This is a BUG. The only way to fix it seems to be to access 3243501a2bdSLois Curfman McInnes mdn->A and mdn->B directly and not through the MatZeroRows() 3258965ea79SLois Curfman McInnes routine. 3268965ea79SLois Curfman McInnes */ 3274a2ae208SSatish Balay #undef __FUNCT__ 3284a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIDense" 3292b40b63fSBarry Smith PetscErrorCode MatZeroRows_MPIDense(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 3308965ea79SLois Curfman McInnes { 33139ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 3326849ba73SBarry Smith PetscErrorCode ierr; 333d0f46423SBarry Smith PetscInt i,*owners = A->rmap->range; 33476ec1555SBarry Smith PetscInt *sizes,j,idx,nsends; 33513f74950SBarry Smith PetscInt nmax,*svalues,*starts,*owner,nrecvs; 3367adad957SLisandro Dalcin PetscInt *rvalues,tag = ((PetscObject)A)->tag,count,base,slen,*source; 33713f74950SBarry Smith PetscInt *lens,*lrows,*values; 33813f74950SBarry Smith PetscMPIInt n,imdex,rank = l->rank,size = l->size; 339ce94432eSBarry Smith MPI_Comm comm; 3408965ea79SLois Curfman McInnes MPI_Request *send_waits,*recv_waits; 3418965ea79SLois Curfman McInnes MPI_Status recv_status,*send_status; 342ace3abfcSBarry Smith PetscBool found; 34397b48c8fSBarry Smith const PetscScalar *xx; 34497b48c8fSBarry Smith PetscScalar *bb; 3458965ea79SLois Curfman McInnes 3463a40ed3dSBarry Smith PetscFunctionBegin; 347ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 348ce94432eSBarry Smith if (A->rmap->N != A->cmap->N) SETERRQ(comm,PETSC_ERR_SUP,"Only handles square matrices"); 349b9679d65SBarry Smith if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only handles matrices with identical column and row ownership"); 3508965ea79SLois Curfman McInnes /* first count number of contributors to each processor */ 351f628708eSJed Brown ierr = PetscCalloc1(2*size,&sizes);CHKERRQ(ierr); 352037dbc42SBarry Smith ierr = PetscMalloc1(N+1,&owner);CHKERRQ(ierr); /* see note*/ 3538965ea79SLois Curfman McInnes for (i=0; i<N; i++) { 3548965ea79SLois Curfman McInnes idx = rows[i]; 35535d8aa7fSBarry Smith found = PETSC_FALSE; 3568965ea79SLois Curfman McInnes for (j=0; j<size; j++) { 3578965ea79SLois Curfman McInnes if (idx >= owners[j] && idx < owners[j+1]) { 35876ec1555SBarry Smith sizes[2*j]++; sizes[2*j+1] = 1; owner[i] = j; found = PETSC_TRUE; break; 3598965ea79SLois Curfman McInnes } 3608965ea79SLois Curfman McInnes } 361e32f2f54SBarry Smith if (!found) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Index out of range"); 3628965ea79SLois Curfman McInnes } 3632205254eSKarl Rupp nsends = 0; 36476ec1555SBarry Smith for (i=0; i<size; i++) nsends += sizes[2*i+1]; 3658965ea79SLois Curfman McInnes 3668965ea79SLois Curfman McInnes /* inform other processors of number of messages and max length*/ 36776ec1555SBarry Smith ierr = PetscMaxSum(comm,sizes,&nmax,&nrecvs);CHKERRQ(ierr); 3688965ea79SLois Curfman McInnes 3698965ea79SLois Curfman McInnes /* post receives: */ 370785e854fSJed Brown ierr = PetscMalloc1((nrecvs+1)*(nmax+1),&rvalues);CHKERRQ(ierr); 371854ce69bSBarry Smith ierr = PetscMalloc1(nrecvs+1,&recv_waits);CHKERRQ(ierr); 3728965ea79SLois Curfman McInnes for (i=0; i<nrecvs; i++) { 37313f74950SBarry Smith ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 3748965ea79SLois Curfman McInnes } 3758965ea79SLois Curfman McInnes 3768965ea79SLois Curfman McInnes /* do sends: 3778965ea79SLois Curfman McInnes 1) starts[i] gives the starting index in svalues for stuff going to 3788965ea79SLois Curfman McInnes the ith processor 3798965ea79SLois Curfman McInnes */ 380854ce69bSBarry Smith ierr = PetscMalloc1(N+1,&svalues);CHKERRQ(ierr); 381854ce69bSBarry Smith ierr = PetscMalloc1(nsends+1,&send_waits);CHKERRQ(ierr); 382854ce69bSBarry Smith ierr = PetscMalloc1(size+1,&starts);CHKERRQ(ierr); 3838965ea79SLois Curfman McInnes 3848965ea79SLois Curfman McInnes starts[0] = 0; 38576ec1555SBarry Smith for (i=1; i<size; i++) starts[i] = starts[i-1] + sizes[2*i-2]; 3862205254eSKarl Rupp for (i=0; i<N; i++) svalues[starts[owner[i]]++] = rows[i]; 3872205254eSKarl Rupp 3882205254eSKarl Rupp starts[0] = 0; 38976ec1555SBarry Smith for (i=1; i<size+1; i++) starts[i] = starts[i-1] + sizes[2*i-2]; 3908965ea79SLois Curfman McInnes count = 0; 3918965ea79SLois Curfman McInnes for (i=0; i<size; i++) { 39276ec1555SBarry Smith if (sizes[2*i+1]) { 39376ec1555SBarry Smith ierr = MPI_Isend(svalues+starts[i],sizes[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 3948965ea79SLois Curfman McInnes } 3958965ea79SLois Curfman McInnes } 396606d414cSSatish Balay ierr = PetscFree(starts);CHKERRQ(ierr); 3978965ea79SLois Curfman McInnes 3988965ea79SLois Curfman McInnes base = owners[rank]; 3998965ea79SLois Curfman McInnes 4008965ea79SLois Curfman McInnes /* wait on receives */ 401dcca6d9dSJed Brown ierr = PetscMalloc2(nrecvs,&lens,nrecvs,&source);CHKERRQ(ierr); 40274ed9c26SBarry Smith count = nrecvs; 40374ed9c26SBarry Smith slen = 0; 4048965ea79SLois Curfman McInnes while (count) { 405ca161407SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 4068965ea79SLois Curfman McInnes /* unpack receives into our local space */ 40713f74950SBarry Smith ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr); 4082205254eSKarl Rupp 4098965ea79SLois Curfman McInnes source[imdex] = recv_status.MPI_SOURCE; 4108965ea79SLois Curfman McInnes lens[imdex] = n; 4118965ea79SLois Curfman McInnes slen += n; 4128965ea79SLois Curfman McInnes count--; 4138965ea79SLois Curfman McInnes } 414606d414cSSatish Balay ierr = PetscFree(recv_waits);CHKERRQ(ierr); 4158965ea79SLois Curfman McInnes 4168965ea79SLois Curfman McInnes /* move the data into the send scatter */ 417854ce69bSBarry Smith ierr = PetscMalloc1(slen+1,&lrows);CHKERRQ(ierr); 4188965ea79SLois Curfman McInnes count = 0; 4198965ea79SLois Curfman McInnes for (i=0; i<nrecvs; i++) { 4208965ea79SLois Curfman McInnes values = rvalues + i*nmax; 4218965ea79SLois Curfman McInnes for (j=0; j<lens[i]; j++) { 4228965ea79SLois Curfman McInnes lrows[count++] = values[j] - base; 4238965ea79SLois Curfman McInnes } 4248965ea79SLois Curfman McInnes } 425606d414cSSatish Balay ierr = PetscFree(rvalues);CHKERRQ(ierr); 42674ed9c26SBarry Smith ierr = PetscFree2(lens,source);CHKERRQ(ierr); 427606d414cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 42876ec1555SBarry Smith ierr = PetscFree(sizes);CHKERRQ(ierr); 4298965ea79SLois Curfman McInnes 43097b48c8fSBarry Smith /* fix right hand side if needed */ 43197b48c8fSBarry Smith if (x && b) { 43297b48c8fSBarry Smith ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr); 43397b48c8fSBarry Smith ierr = VecGetArray(b,&bb);CHKERRQ(ierr); 43497b48c8fSBarry Smith for (i=0; i<slen; i++) { 43597b48c8fSBarry Smith bb[lrows[i]] = diag*xx[lrows[i]]; 43697b48c8fSBarry Smith } 43797b48c8fSBarry Smith ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr); 43897b48c8fSBarry Smith ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr); 43997b48c8fSBarry Smith } 44097b48c8fSBarry Smith 4418965ea79SLois Curfman McInnes /* actually zap the local rows */ 442b9679d65SBarry Smith ierr = MatZeroRows(l->A,slen,lrows,0.0,0,0);CHKERRQ(ierr); 443e2eb51b1SBarry Smith if (diag != 0.0) { 444b9679d65SBarry Smith Mat_SeqDense *ll = (Mat_SeqDense*)l->A->data; 445b9679d65SBarry Smith PetscInt m = ll->lda, i; 446b9679d65SBarry Smith 447b9679d65SBarry Smith for (i=0; i<slen; i++) { 448b9679d65SBarry Smith ll->v[lrows[i] + m*(A->cmap->rstart + lrows[i])] = diag; 449b9679d65SBarry Smith } 450b9679d65SBarry Smith } 451606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 4528965ea79SLois Curfman McInnes 4538965ea79SLois Curfman McInnes /* wait on sends */ 4548965ea79SLois Curfman McInnes if (nsends) { 455785e854fSJed Brown ierr = PetscMalloc1(nsends,&send_status);CHKERRQ(ierr); 456ca161407SBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 457606d414cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 4588965ea79SLois Curfman McInnes } 459606d414cSSatish Balay ierr = PetscFree(send_waits);CHKERRQ(ierr); 460606d414cSSatish Balay ierr = PetscFree(svalues);CHKERRQ(ierr); 4613a40ed3dSBarry Smith PetscFunctionReturn(0); 4628965ea79SLois Curfman McInnes } 4638965ea79SLois Curfman McInnes 464cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMult_SeqDense(Mat,Vec,Vec); 465cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultAdd_SeqDense(Mat,Vec,Vec,Vec); 466cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTranspose_SeqDense(Mat,Vec,Vec); 467cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTransposeAdd_SeqDense(Mat,Vec,Vec,Vec); 468cc2e6a90SBarry Smith 4694a2ae208SSatish Balay #undef __FUNCT__ 4704a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIDense" 471dfbe8321SBarry Smith PetscErrorCode MatMult_MPIDense(Mat mat,Vec xx,Vec yy) 4728965ea79SLois Curfman McInnes { 47339ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 474dfbe8321SBarry Smith PetscErrorCode ierr; 475c456f294SBarry Smith 4763a40ed3dSBarry Smith PetscFunctionBegin; 477ca9f406cSSatish Balay ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 478ca9f406cSSatish Balay ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 479cc2e6a90SBarry Smith ierr = MatMult_SeqDense(mdn->A,mdn->lvec,yy);CHKERRQ(ierr); 4803a40ed3dSBarry Smith PetscFunctionReturn(0); 4818965ea79SLois Curfman McInnes } 4828965ea79SLois Curfman McInnes 4834a2ae208SSatish Balay #undef __FUNCT__ 4844a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIDense" 485dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz) 4868965ea79SLois Curfman McInnes { 48739ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 488dfbe8321SBarry Smith PetscErrorCode ierr; 489c456f294SBarry Smith 4903a40ed3dSBarry Smith PetscFunctionBegin; 491ca9f406cSSatish Balay ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 492ca9f406cSSatish Balay ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 493cc2e6a90SBarry Smith ierr = MatMultAdd_SeqDense(mdn->A,mdn->lvec,yy,zz);CHKERRQ(ierr); 4943a40ed3dSBarry Smith PetscFunctionReturn(0); 4958965ea79SLois Curfman McInnes } 4968965ea79SLois Curfman McInnes 4974a2ae208SSatish Balay #undef __FUNCT__ 4984a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIDense" 499dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIDense(Mat A,Vec xx,Vec yy) 500096963f5SLois Curfman McInnes { 501096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 502dfbe8321SBarry Smith PetscErrorCode ierr; 50387828ca2SBarry Smith PetscScalar zero = 0.0; 504096963f5SLois Curfman McInnes 5053a40ed3dSBarry Smith PetscFunctionBegin; 5062dcb1b2aSMatthew Knepley ierr = VecSet(yy,zero);CHKERRQ(ierr); 507cc2e6a90SBarry Smith ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr); 508ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 509ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 5103a40ed3dSBarry Smith PetscFunctionReturn(0); 511096963f5SLois Curfman McInnes } 512096963f5SLois Curfman McInnes 5134a2ae208SSatish Balay #undef __FUNCT__ 5144a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIDense" 515dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz) 516096963f5SLois Curfman McInnes { 517096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 518dfbe8321SBarry Smith PetscErrorCode ierr; 519096963f5SLois Curfman McInnes 5203a40ed3dSBarry Smith PetscFunctionBegin; 5213501a2bdSLois Curfman McInnes ierr = VecCopy(yy,zz);CHKERRQ(ierr); 522cc2e6a90SBarry Smith ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr); 523ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 524ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 5253a40ed3dSBarry Smith PetscFunctionReturn(0); 526096963f5SLois Curfman McInnes } 527096963f5SLois Curfman McInnes 5284a2ae208SSatish Balay #undef __FUNCT__ 5294a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIDense" 530dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIDense(Mat A,Vec v) 5318965ea79SLois Curfman McInnes { 53239ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 533096963f5SLois Curfman McInnes Mat_SeqDense *aloc = (Mat_SeqDense*)a->A->data; 534dfbe8321SBarry Smith PetscErrorCode ierr; 535d0f46423SBarry Smith PetscInt len,i,n,m = A->rmap->n,radd; 53687828ca2SBarry Smith PetscScalar *x,zero = 0.0; 537ed3cc1f0SBarry Smith 5383a40ed3dSBarry Smith PetscFunctionBegin; 5392dcb1b2aSMatthew Knepley ierr = VecSet(v,zero);CHKERRQ(ierr); 5401ebc52fbSHong Zhang ierr = VecGetArray(v,&x);CHKERRQ(ierr); 541096963f5SLois Curfman McInnes ierr = VecGetSize(v,&n);CHKERRQ(ierr); 542e32f2f54SBarry Smith if (n != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec"); 543d0f46423SBarry Smith len = PetscMin(a->A->rmap->n,a->A->cmap->n); 544d0f46423SBarry Smith radd = A->rmap->rstart*m; 54544cd7ae7SLois Curfman McInnes for (i=0; i<len; i++) { 546096963f5SLois Curfman McInnes x[i] = aloc->v[radd + i*m + i]; 547096963f5SLois Curfman McInnes } 5481ebc52fbSHong Zhang ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 5493a40ed3dSBarry Smith PetscFunctionReturn(0); 5508965ea79SLois Curfman McInnes } 5518965ea79SLois Curfman McInnes 5524a2ae208SSatish Balay #undef __FUNCT__ 5534a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIDense" 554dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIDense(Mat mat) 5558965ea79SLois Curfman McInnes { 5563501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 557dfbe8321SBarry Smith PetscErrorCode ierr; 558ed3cc1f0SBarry Smith 5593a40ed3dSBarry Smith PetscFunctionBegin; 560aa482453SBarry Smith #if defined(PETSC_USE_LOG) 561d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D, Cols=%D",mat->rmap->N,mat->cmap->N); 5628965ea79SLois Curfman McInnes #endif 5638798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 5646bf464f9SBarry Smith ierr = MatDestroy(&mdn->A);CHKERRQ(ierr); 5656bf464f9SBarry Smith ierr = VecDestroy(&mdn->lvec);CHKERRQ(ierr); 5666bf464f9SBarry Smith ierr = VecScatterDestroy(&mdn->Mvctx);CHKERRQ(ierr); 56701b82886SBarry Smith 568bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 569dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 5708baccfbdSHong Zhang 5718baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",NULL);CHKERRQ(ierr); 5728baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",NULL);CHKERRQ(ierr); 5738baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 5748baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",NULL);CHKERRQ(ierr); 5758baccfbdSHong Zhang #endif 576bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C",NULL);CHKERRQ(ierr); 577bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",NULL);CHKERRQ(ierr); 578bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMult_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 579bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 580bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 5818baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMult_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 5828baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultSymbolic_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 5838baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultNumeric_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 5843a40ed3dSBarry Smith PetscFunctionReturn(0); 5858965ea79SLois Curfman McInnes } 58639ddd567SLois Curfman McInnes 5874a2ae208SSatish Balay #undef __FUNCT__ 5884a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense_Binary" 5896849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_Binary(Mat mat,PetscViewer viewer) 5908965ea79SLois Curfman McInnes { 59139ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 592dfbe8321SBarry Smith PetscErrorCode ierr; 593aa05aa95SBarry Smith PetscViewerFormat format; 594aa05aa95SBarry Smith int fd; 595d0f46423SBarry Smith PetscInt header[4],mmax,N = mat->cmap->N,i,j,m,k; 596aa05aa95SBarry Smith PetscMPIInt rank,tag = ((PetscObject)viewer)->tag,size; 597578230a0SSatish Balay PetscScalar *work,*v,*vv; 598aa05aa95SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)mdn->A->data; 5997056b6fcSBarry Smith 6003a40ed3dSBarry Smith PetscFunctionBegin; 60139ddd567SLois Curfman McInnes if (mdn->size == 1) { 60239ddd567SLois Curfman McInnes ierr = MatView(mdn->A,viewer);CHKERRQ(ierr); 603aa05aa95SBarry Smith } else { 604aa05aa95SBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 605ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr); 606ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&size);CHKERRQ(ierr); 607aa05aa95SBarry Smith 608aa05aa95SBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 609f4403165SShri Abhyankar if (format == PETSC_VIEWER_NATIVE) { 610aa05aa95SBarry Smith 611aa05aa95SBarry Smith if (!rank) { 612aa05aa95SBarry Smith /* store the matrix as a dense matrix */ 6130700a824SBarry Smith header[0] = MAT_FILE_CLASSID; 614d0f46423SBarry Smith header[1] = mat->rmap->N; 615aa05aa95SBarry Smith header[2] = N; 616aa05aa95SBarry Smith header[3] = MATRIX_BINARY_FORMAT_DENSE; 617aa05aa95SBarry Smith ierr = PetscBinaryWrite(fd,header,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 618aa05aa95SBarry Smith 619aa05aa95SBarry Smith /* get largest work array needed for transposing array */ 620d0f46423SBarry Smith mmax = mat->rmap->n; 621aa05aa95SBarry Smith for (i=1; i<size; i++) { 622d0f46423SBarry Smith mmax = PetscMax(mmax,mat->rmap->range[i+1] - mat->rmap->range[i]); 6238965ea79SLois Curfman McInnes } 624785e854fSJed Brown ierr = PetscMalloc1(mmax*N,&work);CHKERRQ(ierr); 625aa05aa95SBarry Smith 626aa05aa95SBarry Smith /* write out local array, by rows */ 627d0f46423SBarry Smith m = mat->rmap->n; 628aa05aa95SBarry Smith v = a->v; 629aa05aa95SBarry Smith for (j=0; j<N; j++) { 630aa05aa95SBarry Smith for (i=0; i<m; i++) { 631578230a0SSatish Balay work[j + i*N] = *v++; 632aa05aa95SBarry Smith } 633aa05aa95SBarry Smith } 634aa05aa95SBarry Smith ierr = PetscBinaryWrite(fd,work,m*N,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr); 635aa05aa95SBarry Smith /* get largest work array to receive messages from other processes, excludes process zero */ 636aa05aa95SBarry Smith mmax = 0; 637aa05aa95SBarry Smith for (i=1; i<size; i++) { 638d0f46423SBarry Smith mmax = PetscMax(mmax,mat->rmap->range[i+1] - mat->rmap->range[i]); 639aa05aa95SBarry Smith } 640785e854fSJed Brown ierr = PetscMalloc1(mmax*N,&vv);CHKERRQ(ierr); 641aa05aa95SBarry Smith for (k = 1; k < size; k++) { 642f8009846SMatthew Knepley v = vv; 643d0f46423SBarry Smith m = mat->rmap->range[k+1] - mat->rmap->range[k]; 644ce94432eSBarry Smith ierr = MPIULong_Recv(v,m*N,MPIU_SCALAR,k,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 645aa05aa95SBarry Smith 646aa05aa95SBarry Smith for (j = 0; j < N; j++) { 647aa05aa95SBarry Smith for (i = 0; i < m; i++) { 648578230a0SSatish Balay work[j + i*N] = *v++; 649aa05aa95SBarry Smith } 650aa05aa95SBarry Smith } 651aa05aa95SBarry Smith ierr = PetscBinaryWrite(fd,work,m*N,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr); 652aa05aa95SBarry Smith } 653aa05aa95SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 654578230a0SSatish Balay ierr = PetscFree(vv);CHKERRQ(ierr); 655aa05aa95SBarry Smith } else { 656ce94432eSBarry Smith ierr = MPIULong_Send(a->v,mat->rmap->n*mat->cmap->N,MPIU_SCALAR,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 657aa05aa95SBarry Smith } 6586a9046bcSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"To store a parallel dense matrix you must first call PetscViewerPushFormat(viewer,PETSC_VIEWER_NATIVE)"); 659aa05aa95SBarry Smith } 6603a40ed3dSBarry Smith PetscFunctionReturn(0); 6618965ea79SLois Curfman McInnes } 6628965ea79SLois Curfman McInnes 6637da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqDense(Mat,PetscViewer); 6649804daf3SBarry Smith #include <petscdraw.h> 6654a2ae208SSatish Balay #undef __FUNCT__ 6664a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense_ASCIIorDraworSocket" 6676849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 6688965ea79SLois Curfman McInnes { 66939ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 670dfbe8321SBarry Smith PetscErrorCode ierr; 6717da1fb6eSBarry Smith PetscMPIInt rank = mdn->rank; 67219fd82e9SBarry Smith PetscViewerType vtype; 673ace3abfcSBarry Smith PetscBool iascii,isdraw; 674b0a32e0cSBarry Smith PetscViewer sviewer; 675f3ef73ceSBarry Smith PetscViewerFormat format; 6768965ea79SLois Curfman McInnes 6773a40ed3dSBarry Smith PetscFunctionBegin; 678251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 679251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 68032077d6dSBarry Smith if (iascii) { 681b0a32e0cSBarry Smith ierr = PetscViewerGetType(viewer,&vtype);CHKERRQ(ierr); 682b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 683456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 6844e220ebcSLois Curfman McInnes MatInfo info; 685888f2ed8SSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 6861575c14dSBarry Smith ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr); 6877b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer," [%d] local rows %D nz %D nz alloced %D mem %D \n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory);CHKERRQ(ierr); 688b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 6891575c14dSBarry Smith ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr); 6905d00a290SHong Zhang ierr = VecScatterView(mdn->Mvctx,viewer);CHKERRQ(ierr); 6913a40ed3dSBarry Smith PetscFunctionReturn(0); 692fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 6933a40ed3dSBarry Smith PetscFunctionReturn(0); 6948965ea79SLois Curfman McInnes } 695f1af5d2fSBarry Smith } else if (isdraw) { 696b0a32e0cSBarry Smith PetscDraw draw; 697ace3abfcSBarry Smith PetscBool isnull; 698f1af5d2fSBarry Smith 699b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 700b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 701f1af5d2fSBarry Smith if (isnull) PetscFunctionReturn(0); 702f1af5d2fSBarry Smith } 70377ed5343SBarry Smith 7047da1fb6eSBarry Smith { 7058965ea79SLois Curfman McInnes /* assemble the entire matrix onto first processor. */ 7068965ea79SLois Curfman McInnes Mat A; 707d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,m,row,i,nz; 708ba8c8a56SBarry Smith PetscInt *cols; 709ba8c8a56SBarry Smith PetscScalar *vals; 7108965ea79SLois Curfman McInnes 711ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr); 7128965ea79SLois Curfman McInnes if (!rank) { 713f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 7143a40ed3dSBarry Smith } else { 715f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 7168965ea79SLois Curfman McInnes } 7177adad957SLisandro Dalcin /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */ 718878740d9SKris Buschelman ierr = MatSetType(A,MATMPIDENSE);CHKERRQ(ierr); 7190298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(A,NULL);CHKERRQ(ierr); 7203bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr); 7218965ea79SLois Curfman McInnes 72239ddd567SLois Curfman McInnes /* Copy the matrix ... This isn't the most efficient means, 72339ddd567SLois Curfman McInnes but it's quick for now */ 72451022da4SBarry Smith A->insertmode = INSERT_VALUES; 7252205254eSKarl Rupp 7262205254eSKarl Rupp row = mat->rmap->rstart; 7272205254eSKarl Rupp m = mdn->A->rmap->n; 7288965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 729ba8c8a56SBarry Smith ierr = MatGetRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 730ba8c8a56SBarry Smith ierr = MatSetValues_MPIDense(A,1,&row,nz,cols,vals,INSERT_VALUES);CHKERRQ(ierr); 731ba8c8a56SBarry Smith ierr = MatRestoreRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 73239ddd567SLois Curfman McInnes row++; 7338965ea79SLois Curfman McInnes } 7348965ea79SLois Curfman McInnes 7356d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 7366d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 7373f08860eSBarry Smith ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 738b9b97703SBarry Smith if (!rank) { 739*1a9d3c3cSBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPIDense*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr); 7407da1fb6eSBarry Smith ierr = MatView_SeqDense(((Mat_MPIDense*)(A->data))->A,sviewer);CHKERRQ(ierr); 7418965ea79SLois Curfman McInnes } 7423f08860eSBarry Smith ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 743b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 7446bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 7458965ea79SLois Curfman McInnes } 7463a40ed3dSBarry Smith PetscFunctionReturn(0); 7478965ea79SLois Curfman McInnes } 7488965ea79SLois Curfman McInnes 7494a2ae208SSatish Balay #undef __FUNCT__ 7504a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense" 751dfbe8321SBarry Smith PetscErrorCode MatView_MPIDense(Mat mat,PetscViewer viewer) 7528965ea79SLois Curfman McInnes { 753dfbe8321SBarry Smith PetscErrorCode ierr; 754ace3abfcSBarry Smith PetscBool iascii,isbinary,isdraw,issocket; 7558965ea79SLois Curfman McInnes 756433994e6SBarry Smith PetscFunctionBegin; 757251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 758251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 759251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 760251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 7610f5bd95cSBarry Smith 76232077d6dSBarry Smith if (iascii || issocket || isdraw) { 763f1af5d2fSBarry Smith ierr = MatView_MPIDense_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 7640f5bd95cSBarry Smith } else if (isbinary) { 7653a40ed3dSBarry Smith ierr = MatView_MPIDense_Binary(mat,viewer);CHKERRQ(ierr); 76611aeaf0aSBarry Smith } 7673a40ed3dSBarry Smith PetscFunctionReturn(0); 7688965ea79SLois Curfman McInnes } 7698965ea79SLois Curfman McInnes 7704a2ae208SSatish Balay #undef __FUNCT__ 7714a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIDense" 772dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info) 7738965ea79SLois Curfman McInnes { 7743501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 7753501a2bdSLois Curfman McInnes Mat mdn = mat->A; 776dfbe8321SBarry Smith PetscErrorCode ierr; 777329f5518SBarry Smith PetscReal isend[5],irecv[5]; 7788965ea79SLois Curfman McInnes 7793a40ed3dSBarry Smith PetscFunctionBegin; 7804e220ebcSLois Curfman McInnes info->block_size = 1.0; 7812205254eSKarl Rupp 7824e220ebcSLois Curfman McInnes ierr = MatGetInfo(mdn,MAT_LOCAL,info);CHKERRQ(ierr); 7832205254eSKarl Rupp 7844e220ebcSLois Curfman McInnes isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 7854e220ebcSLois Curfman McInnes isend[3] = info->memory; isend[4] = info->mallocs; 7868965ea79SLois Curfman McInnes if (flag == MAT_LOCAL) { 7874e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 7884e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 7894e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 7904e220ebcSLois Curfman McInnes info->memory = isend[3]; 7914e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 7928965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 793b2566f29SBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 7942205254eSKarl Rupp 7954e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7964e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7974e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7984e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7994e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 8008965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 801b2566f29SBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 8022205254eSKarl Rupp 8034e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 8044e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 8054e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 8064e220ebcSLois Curfman McInnes info->memory = irecv[3]; 8074e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 8088965ea79SLois Curfman McInnes } 8094e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 8104e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 8114e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 8123a40ed3dSBarry Smith PetscFunctionReturn(0); 8138965ea79SLois Curfman McInnes } 8148965ea79SLois Curfman McInnes 8154a2ae208SSatish Balay #undef __FUNCT__ 8164a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIDense" 817ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIDense(Mat A,MatOption op,PetscBool flg) 8188965ea79SLois Curfman McInnes { 81939ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 820dfbe8321SBarry Smith PetscErrorCode ierr; 8218965ea79SLois Curfman McInnes 8223a40ed3dSBarry Smith PetscFunctionBegin; 82312c028f9SKris Buschelman switch (op) { 824512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 82512c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 82612c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 82743674050SBarry Smith MatCheckPreallocated(A,1); 8284e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 82912c028f9SKris Buschelman break; 83012c028f9SKris Buschelman case MAT_ROW_ORIENTED: 83143674050SBarry Smith MatCheckPreallocated(A,1); 8324e0d8c25SBarry Smith a->roworiented = flg; 8334e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 83412c028f9SKris Buschelman break; 8354e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 83613fa8e87SLisandro Dalcin case MAT_KEEP_NONZERO_PATTERN: 83712c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 838290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 83912c028f9SKris Buschelman break; 84012c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 8414e0d8c25SBarry Smith a->donotstash = flg; 84212c028f9SKris Buschelman break; 84377e54ba9SKris Buschelman case MAT_SYMMETRIC: 84477e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 8459a4540c5SBarry Smith case MAT_HERMITIAN: 8469a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 847600fe468SBarry Smith case MAT_IGNORE_LOWER_TRIANGULAR: 848290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 84977e54ba9SKris Buschelman break; 85012c028f9SKris Buschelman default: 851e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %s",MatOptions[op]); 8523a40ed3dSBarry Smith } 8533a40ed3dSBarry Smith PetscFunctionReturn(0); 8548965ea79SLois Curfman McInnes } 8558965ea79SLois Curfman McInnes 8568965ea79SLois Curfman McInnes 8574a2ae208SSatish Balay #undef __FUNCT__ 8584a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIDense" 859dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIDense(Mat A,Vec ll,Vec rr) 8605b2fa520SLois Curfman McInnes { 8615b2fa520SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 8625b2fa520SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)mdn->A->data; 86387828ca2SBarry Smith PetscScalar *l,*r,x,*v; 864dfbe8321SBarry Smith PetscErrorCode ierr; 865d0f46423SBarry Smith PetscInt i,j,s2a,s3a,s2,s3,m=mdn->A->rmap->n,n=mdn->A->cmap->n; 8665b2fa520SLois Curfman McInnes 8675b2fa520SLois Curfman McInnes PetscFunctionBegin; 86872d926a5SLois Curfman McInnes ierr = MatGetLocalSize(A,&s2,&s3);CHKERRQ(ierr); 8695b2fa520SLois Curfman McInnes if (ll) { 87072d926a5SLois Curfman McInnes ierr = VecGetLocalSize(ll,&s2a);CHKERRQ(ierr); 871e32f2f54SBarry Smith if (s2a != s2) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vector non-conforming local size, %d != %d.", s2a, s2); 8721ebc52fbSHong Zhang ierr = VecGetArray(ll,&l);CHKERRQ(ierr); 8735b2fa520SLois Curfman McInnes for (i=0; i<m; i++) { 8745b2fa520SLois Curfman McInnes x = l[i]; 8755b2fa520SLois Curfman McInnes v = mat->v + i; 8765b2fa520SLois Curfman McInnes for (j=0; j<n; j++) { (*v) *= x; v+= m;} 8775b2fa520SLois Curfman McInnes } 8781ebc52fbSHong Zhang ierr = VecRestoreArray(ll,&l);CHKERRQ(ierr); 879efee365bSSatish Balay ierr = PetscLogFlops(n*m);CHKERRQ(ierr); 8805b2fa520SLois Curfman McInnes } 8815b2fa520SLois Curfman McInnes if (rr) { 882175be7b4SMatthew Knepley ierr = VecGetLocalSize(rr,&s3a);CHKERRQ(ierr); 883e32f2f54SBarry Smith if (s3a != s3) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vec non-conforming local size, %d != %d.", s3a, s3); 884ca9f406cSSatish Balay ierr = VecScatterBegin(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 885ca9f406cSSatish Balay ierr = VecScatterEnd(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 8861ebc52fbSHong Zhang ierr = VecGetArray(mdn->lvec,&r);CHKERRQ(ierr); 8875b2fa520SLois Curfman McInnes for (i=0; i<n; i++) { 8885b2fa520SLois Curfman McInnes x = r[i]; 8895b2fa520SLois Curfman McInnes v = mat->v + i*m; 8902205254eSKarl Rupp for (j=0; j<m; j++) (*v++) *= x; 8915b2fa520SLois Curfman McInnes } 8921ebc52fbSHong Zhang ierr = VecRestoreArray(mdn->lvec,&r);CHKERRQ(ierr); 893efee365bSSatish Balay ierr = PetscLogFlops(n*m);CHKERRQ(ierr); 8945b2fa520SLois Curfman McInnes } 8955b2fa520SLois Curfman McInnes PetscFunctionReturn(0); 8965b2fa520SLois Curfman McInnes } 8975b2fa520SLois Curfman McInnes 8984a2ae208SSatish Balay #undef __FUNCT__ 8994a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIDense" 900dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIDense(Mat A,NormType type,PetscReal *nrm) 901096963f5SLois Curfman McInnes { 9023501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 9033501a2bdSLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)mdn->A->data; 904dfbe8321SBarry Smith PetscErrorCode ierr; 90513f74950SBarry Smith PetscInt i,j; 906329f5518SBarry Smith PetscReal sum = 0.0; 90787828ca2SBarry Smith PetscScalar *v = mat->v; 9083501a2bdSLois Curfman McInnes 9093a40ed3dSBarry Smith PetscFunctionBegin; 9103501a2bdSLois Curfman McInnes if (mdn->size == 1) { 911064f8208SBarry Smith ierr = MatNorm(mdn->A,type,nrm);CHKERRQ(ierr); 9123501a2bdSLois Curfman McInnes } else { 9133501a2bdSLois Curfman McInnes if (type == NORM_FROBENIUS) { 914d0f46423SBarry Smith for (i=0; i<mdn->A->cmap->n*mdn->A->rmap->n; i++) { 915329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 9163501a2bdSLois Curfman McInnes } 917b2566f29SBarry Smith ierr = MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 9188f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 919dc0b31edSSatish Balay ierr = PetscLogFlops(2.0*mdn->A->cmap->n*mdn->A->rmap->n);CHKERRQ(ierr); 9203a40ed3dSBarry Smith } else if (type == NORM_1) { 921329f5518SBarry Smith PetscReal *tmp,*tmp2; 922dcca6d9dSJed Brown ierr = PetscMalloc2(A->cmap->N,&tmp,A->cmap->N,&tmp2);CHKERRQ(ierr); 92374ed9c26SBarry Smith ierr = PetscMemzero(tmp,A->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 92474ed9c26SBarry Smith ierr = PetscMemzero(tmp2,A->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 925064f8208SBarry Smith *nrm = 0.0; 9263501a2bdSLois Curfman McInnes v = mat->v; 927d0f46423SBarry Smith for (j=0; j<mdn->A->cmap->n; j++) { 928d0f46423SBarry Smith for (i=0; i<mdn->A->rmap->n; i++) { 92967e560aaSBarry Smith tmp[j] += PetscAbsScalar(*v); v++; 9303501a2bdSLois Curfman McInnes } 9313501a2bdSLois Curfman McInnes } 932b2566f29SBarry Smith ierr = MPIU_Allreduce(tmp,tmp2,A->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 933d0f46423SBarry Smith for (j=0; j<A->cmap->N; j++) { 934064f8208SBarry Smith if (tmp2[j] > *nrm) *nrm = tmp2[j]; 9353501a2bdSLois Curfman McInnes } 9368627564fSBarry Smith ierr = PetscFree2(tmp,tmp2);CHKERRQ(ierr); 937d0f46423SBarry Smith ierr = PetscLogFlops(A->cmap->n*A->rmap->n);CHKERRQ(ierr); 9383a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 939329f5518SBarry Smith PetscReal ntemp; 9403501a2bdSLois Curfman McInnes ierr = MatNorm(mdn->A,type,&ntemp);CHKERRQ(ierr); 941b2566f29SBarry Smith ierr = MPIU_Allreduce(&ntemp,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 942ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"No support for two norm"); 9433501a2bdSLois Curfman McInnes } 9443a40ed3dSBarry Smith PetscFunctionReturn(0); 9453501a2bdSLois Curfman McInnes } 9463501a2bdSLois Curfman McInnes 9474a2ae208SSatish Balay #undef __FUNCT__ 9484a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPIDense" 949fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIDense(Mat A,MatReuse reuse,Mat *matout) 9503501a2bdSLois Curfman McInnes { 9513501a2bdSLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 9523501a2bdSLois Curfman McInnes Mat_SeqDense *Aloc = (Mat_SeqDense*)a->A->data; 9533501a2bdSLois Curfman McInnes Mat B; 954d0f46423SBarry Smith PetscInt M = A->rmap->N,N = A->cmap->N,m,n,*rwork,rstart = A->rmap->rstart; 9556849ba73SBarry Smith PetscErrorCode ierr; 95613f74950SBarry Smith PetscInt j,i; 95787828ca2SBarry Smith PetscScalar *v; 9583501a2bdSLois Curfman McInnes 9593a40ed3dSBarry Smith PetscFunctionBegin; 960ce94432eSBarry Smith if (reuse == MAT_REUSE_MATRIX && A == *matout && M != N) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Supports square matrix only in-place"); 961fc4dec0aSBarry Smith if (reuse == MAT_INITIAL_MATRIX || A == *matout) { 962ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 963d0f46423SBarry Smith ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr); 9647adad957SLisandro Dalcin ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr); 9650298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(B,NULL);CHKERRQ(ierr); 966fc4dec0aSBarry Smith } else { 967fc4dec0aSBarry Smith B = *matout; 968fc4dec0aSBarry Smith } 9693501a2bdSLois Curfman McInnes 970d0f46423SBarry Smith m = a->A->rmap->n; n = a->A->cmap->n; v = Aloc->v; 971785e854fSJed Brown ierr = PetscMalloc1(m,&rwork);CHKERRQ(ierr); 9723501a2bdSLois Curfman McInnes for (i=0; i<m; i++) rwork[i] = rstart + i; 9731acff37aSSatish Balay for (j=0; j<n; j++) { 9743501a2bdSLois Curfman McInnes ierr = MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES);CHKERRQ(ierr); 9753501a2bdSLois Curfman McInnes v += m; 9763501a2bdSLois Curfman McInnes } 977606d414cSSatish Balay ierr = PetscFree(rwork);CHKERRQ(ierr); 9786d4a8577SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 9796d4a8577SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 980815cbec1SBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout != A) { 9813501a2bdSLois Curfman McInnes *matout = B; 9823501a2bdSLois Curfman McInnes } else { 98328be2f97SBarry Smith ierr = MatHeaderMerge(A,&B);CHKERRQ(ierr); 9843501a2bdSLois Curfman McInnes } 9853a40ed3dSBarry Smith PetscFunctionReturn(0); 986096963f5SLois Curfman McInnes } 987096963f5SLois Curfman McInnes 98844cd7ae7SLois Curfman McInnes 9896849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat*); 990d84338a6SBarry Smith extern PetscErrorCode MatScale_MPIDense(Mat,PetscScalar); 9918965ea79SLois Curfman McInnes 9924a2ae208SSatish Balay #undef __FUNCT__ 9934994cf47SJed Brown #define __FUNCT__ "MatSetUp_MPIDense" 9944994cf47SJed Brown PetscErrorCode MatSetUp_MPIDense(Mat A) 995273d9f13SBarry Smith { 996dfbe8321SBarry Smith PetscErrorCode ierr; 997273d9f13SBarry Smith 998273d9f13SBarry Smith PetscFunctionBegin; 999273d9f13SBarry Smith ierr = MatMPIDenseSetPreallocation(A,0);CHKERRQ(ierr); 1000273d9f13SBarry Smith PetscFunctionReturn(0); 1001273d9f13SBarry Smith } 1002273d9f13SBarry Smith 100330716080SHong Zhang #undef __FUNCT__ 1004488007eeSBarry Smith #define __FUNCT__ "MatAXPY_MPIDense" 1005488007eeSBarry Smith PetscErrorCode MatAXPY_MPIDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str) 1006488007eeSBarry Smith { 1007488007eeSBarry Smith PetscErrorCode ierr; 1008488007eeSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)Y->data, *B = (Mat_MPIDense*)X->data; 1009488007eeSBarry Smith 1010488007eeSBarry Smith PetscFunctionBegin; 1011488007eeSBarry Smith ierr = MatAXPY(A->A,alpha,B->A,str);CHKERRQ(ierr); 1012a3fa217bSJose E. Roman ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr); 1013488007eeSBarry Smith PetscFunctionReturn(0); 1014488007eeSBarry Smith } 1015488007eeSBarry Smith 1016ba337c44SJed Brown #undef __FUNCT__ 1017ba337c44SJed Brown #define __FUNCT__ "MatConjugate_MPIDense" 10187087cfbeSBarry Smith PetscErrorCode MatConjugate_MPIDense(Mat mat) 1019ba337c44SJed Brown { 1020ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)mat->data; 1021ba337c44SJed Brown PetscErrorCode ierr; 1022ba337c44SJed Brown 1023ba337c44SJed Brown PetscFunctionBegin; 1024ba337c44SJed Brown ierr = MatConjugate(a->A);CHKERRQ(ierr); 1025ba337c44SJed Brown PetscFunctionReturn(0); 1026ba337c44SJed Brown } 1027ba337c44SJed Brown 1028ba337c44SJed Brown #undef __FUNCT__ 1029ba337c44SJed Brown #define __FUNCT__ "MatRealPart_MPIDense" 1030ba337c44SJed Brown PetscErrorCode MatRealPart_MPIDense(Mat A) 1031ba337c44SJed Brown { 1032ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1033ba337c44SJed Brown PetscErrorCode ierr; 1034ba337c44SJed Brown 1035ba337c44SJed Brown PetscFunctionBegin; 1036ba337c44SJed Brown ierr = MatRealPart(a->A);CHKERRQ(ierr); 1037ba337c44SJed Brown PetscFunctionReturn(0); 1038ba337c44SJed Brown } 1039ba337c44SJed Brown 1040ba337c44SJed Brown #undef __FUNCT__ 1041ba337c44SJed Brown #define __FUNCT__ "MatImaginaryPart_MPIDense" 1042ba337c44SJed Brown PetscErrorCode MatImaginaryPart_MPIDense(Mat A) 1043ba337c44SJed Brown { 1044ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1045ba337c44SJed Brown PetscErrorCode ierr; 1046ba337c44SJed Brown 1047ba337c44SJed Brown PetscFunctionBegin; 1048ba337c44SJed Brown ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 1049ba337c44SJed Brown PetscFunctionReturn(0); 1050ba337c44SJed Brown } 1051ba337c44SJed Brown 10520716a85fSBarry Smith extern PetscErrorCode MatGetColumnNorms_SeqDense(Mat,NormType,PetscReal*); 10530716a85fSBarry Smith #undef __FUNCT__ 10540716a85fSBarry Smith #define __FUNCT__ "MatGetColumnNorms_MPIDense" 10550716a85fSBarry Smith PetscErrorCode MatGetColumnNorms_MPIDense(Mat A,NormType type,PetscReal *norms) 10560716a85fSBarry Smith { 10570716a85fSBarry Smith PetscErrorCode ierr; 10580716a85fSBarry Smith PetscInt i,n; 10590716a85fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*) A->data; 10600716a85fSBarry Smith PetscReal *work; 10610716a85fSBarry Smith 10620716a85fSBarry Smith PetscFunctionBegin; 10630298fd71SBarry Smith ierr = MatGetSize(A,NULL,&n);CHKERRQ(ierr); 1064785e854fSJed Brown ierr = PetscMalloc1(n,&work);CHKERRQ(ierr); 10650716a85fSBarry Smith ierr = MatGetColumnNorms_SeqDense(a->A,type,work);CHKERRQ(ierr); 10660716a85fSBarry Smith if (type == NORM_2) { 10670716a85fSBarry Smith for (i=0; i<n; i++) work[i] *= work[i]; 10680716a85fSBarry Smith } 10690716a85fSBarry Smith if (type == NORM_INFINITY) { 1070b2566f29SBarry Smith ierr = MPIU_Allreduce(work,norms,n,MPIU_REAL,MPIU_MAX,A->hdr.comm);CHKERRQ(ierr); 10710716a85fSBarry Smith } else { 1072b2566f29SBarry Smith ierr = MPIU_Allreduce(work,norms,n,MPIU_REAL,MPIU_SUM,A->hdr.comm);CHKERRQ(ierr); 10730716a85fSBarry Smith } 10740716a85fSBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 10750716a85fSBarry Smith if (type == NORM_2) { 10768f1a2a5eSBarry Smith for (i=0; i<n; i++) norms[i] = PetscSqrtReal(norms[i]); 10770716a85fSBarry Smith } 10780716a85fSBarry Smith PetscFunctionReturn(0); 10790716a85fSBarry Smith } 10800716a85fSBarry Smith 108173a71a0fSBarry Smith #undef __FUNCT__ 108273a71a0fSBarry Smith #define __FUNCT__ "MatSetRandom_MPIDense" 108373a71a0fSBarry Smith static PetscErrorCode MatSetRandom_MPIDense(Mat x,PetscRandom rctx) 108473a71a0fSBarry Smith { 108573a71a0fSBarry Smith Mat_MPIDense *d = (Mat_MPIDense*)x->data; 108673a71a0fSBarry Smith PetscErrorCode ierr; 108773a71a0fSBarry Smith PetscScalar *a; 108873a71a0fSBarry Smith PetscInt m,n,i; 108973a71a0fSBarry Smith 109073a71a0fSBarry Smith PetscFunctionBegin; 109173a71a0fSBarry Smith ierr = MatGetSize(d->A,&m,&n);CHKERRQ(ierr); 10928c778c55SBarry Smith ierr = MatDenseGetArray(d->A,&a);CHKERRQ(ierr); 109373a71a0fSBarry Smith for (i=0; i<m*n; i++) { 109473a71a0fSBarry Smith ierr = PetscRandomGetValue(rctx,a+i);CHKERRQ(ierr); 109573a71a0fSBarry Smith } 10968c778c55SBarry Smith ierr = MatDenseRestoreArray(d->A,&a);CHKERRQ(ierr); 109773a71a0fSBarry Smith PetscFunctionReturn(0); 109873a71a0fSBarry Smith } 109973a71a0fSBarry Smith 1100fd4e9aacSBarry Smith extern PetscErrorCode MatMatMultNumeric_MPIDense(Mat A,Mat,Mat); 1101fd4e9aacSBarry Smith 11023b49f96aSBarry Smith #undef __FUNCT__ 11033b49f96aSBarry Smith #define __FUNCT__ "MatMissingDiagonal_MPIDense" 11043b49f96aSBarry Smith static PetscErrorCode MatMissingDiagonal_MPIDense(Mat A,PetscBool *missing,PetscInt *d) 11053b49f96aSBarry Smith { 11063b49f96aSBarry Smith PetscFunctionBegin; 11073b49f96aSBarry Smith *missing = PETSC_FALSE; 11083b49f96aSBarry Smith PetscFunctionReturn(0); 11093b49f96aSBarry Smith } 11103b49f96aSBarry Smith 11118965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/ 111209dc0095SBarry Smith static struct _MatOps MatOps_Values = { MatSetValues_MPIDense, 111309dc0095SBarry Smith MatGetRow_MPIDense, 111409dc0095SBarry Smith MatRestoreRow_MPIDense, 111509dc0095SBarry Smith MatMult_MPIDense, 111697304618SKris Buschelman /* 4*/ MatMultAdd_MPIDense, 11177c922b88SBarry Smith MatMultTranspose_MPIDense, 11187c922b88SBarry Smith MatMultTransposeAdd_MPIDense, 11198965ea79SLois Curfman McInnes 0, 112009dc0095SBarry Smith 0, 112109dc0095SBarry Smith 0, 112297304618SKris Buschelman /* 10*/ 0, 112309dc0095SBarry Smith 0, 112409dc0095SBarry Smith 0, 112509dc0095SBarry Smith 0, 112609dc0095SBarry Smith MatTranspose_MPIDense, 112797304618SKris Buschelman /* 15*/ MatGetInfo_MPIDense, 11286e4ee0c6SHong Zhang MatEqual_MPIDense, 112909dc0095SBarry Smith MatGetDiagonal_MPIDense, 11305b2fa520SLois Curfman McInnes MatDiagonalScale_MPIDense, 113109dc0095SBarry Smith MatNorm_MPIDense, 113297304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPIDense, 113309dc0095SBarry Smith MatAssemblyEnd_MPIDense, 113409dc0095SBarry Smith MatSetOption_MPIDense, 113509dc0095SBarry Smith MatZeroEntries_MPIDense, 1136d519adbfSMatthew Knepley /* 24*/ MatZeroRows_MPIDense, 1137919b68f7SBarry Smith 0, 113801b82886SBarry Smith 0, 113901b82886SBarry Smith 0, 114001b82886SBarry Smith 0, 11414994cf47SJed Brown /* 29*/ MatSetUp_MPIDense, 1142273d9f13SBarry Smith 0, 114309dc0095SBarry Smith 0, 11448c778c55SBarry Smith 0, 11458c778c55SBarry Smith 0, 1146d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPIDense, 114709dc0095SBarry Smith 0, 114809dc0095SBarry Smith 0, 114909dc0095SBarry Smith 0, 115009dc0095SBarry Smith 0, 1151d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPIDense, 11522ce60cd0SSatish Balay MatGetSubMatrices_MPIDense, 115309dc0095SBarry Smith 0, 115409dc0095SBarry Smith MatGetValues_MPIDense, 115509dc0095SBarry Smith 0, 1156d519adbfSMatthew Knepley /* 44*/ 0, 115709dc0095SBarry Smith MatScale_MPIDense, 11587d68702bSBarry Smith MatShift_Basic, 115909dc0095SBarry Smith 0, 116009dc0095SBarry Smith 0, 116173a71a0fSBarry Smith /* 49*/ MatSetRandom_MPIDense, 116209dc0095SBarry Smith 0, 116309dc0095SBarry Smith 0, 116409dc0095SBarry Smith 0, 116509dc0095SBarry Smith 0, 1166d519adbfSMatthew Knepley /* 54*/ 0, 116709dc0095SBarry Smith 0, 116809dc0095SBarry Smith 0, 116909dc0095SBarry Smith 0, 117009dc0095SBarry Smith 0, 1171d519adbfSMatthew Knepley /* 59*/ MatGetSubMatrix_MPIDense, 1172b9b97703SBarry Smith MatDestroy_MPIDense, 1173b9b97703SBarry Smith MatView_MPIDense, 1174357abbc8SBarry Smith 0, 117597304618SKris Buschelman 0, 1176d519adbfSMatthew Knepley /* 64*/ 0, 117797304618SKris Buschelman 0, 117897304618SKris Buschelman 0, 117997304618SKris Buschelman 0, 118097304618SKris Buschelman 0, 1181d519adbfSMatthew Knepley /* 69*/ 0, 118297304618SKris Buschelman 0, 118397304618SKris Buschelman 0, 118497304618SKris Buschelman 0, 118597304618SKris Buschelman 0, 1186d519adbfSMatthew Knepley /* 74*/ 0, 118797304618SKris Buschelman 0, 118897304618SKris Buschelman 0, 118997304618SKris Buschelman 0, 119097304618SKris Buschelman 0, 1191d519adbfSMatthew Knepley /* 79*/ 0, 119297304618SKris Buschelman 0, 119397304618SKris Buschelman 0, 119497304618SKris Buschelman 0, 11955bba2384SShri Abhyankar /* 83*/ MatLoad_MPIDense, 1196865e5f61SKris Buschelman 0, 1197865e5f61SKris Buschelman 0, 1198865e5f61SKris Buschelman 0, 1199865e5f61SKris Buschelman 0, 1200865e5f61SKris Buschelman 0, 12019775878aSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 1202320f2790SHong Zhang /* 89*/ MatMatMult_MPIDense_MPIDense, 1203320f2790SHong Zhang MatMatMultSymbolic_MPIDense_MPIDense, 12049775878aSHong Zhang #else 12059775878aSHong Zhang /* 89*/ 0, 1206865e5f61SKris Buschelman 0, 12079775878aSHong Zhang #endif 1208fd4e9aacSBarry Smith MatMatMultNumeric_MPIDense, 12092fbe02b9SBarry Smith 0, 1210ba337c44SJed Brown 0, 1211d519adbfSMatthew Knepley /* 94*/ 0, 1212865e5f61SKris Buschelman 0, 1213865e5f61SKris Buschelman 0, 1214ba337c44SJed Brown 0, 1215ba337c44SJed Brown 0, 1216ba337c44SJed Brown /* 99*/ 0, 1217ba337c44SJed Brown 0, 1218ba337c44SJed Brown 0, 1219ba337c44SJed Brown MatConjugate_MPIDense, 1220ba337c44SJed Brown 0, 1221ba337c44SJed Brown /*104*/ 0, 1222ba337c44SJed Brown MatRealPart_MPIDense, 1223ba337c44SJed Brown MatImaginaryPart_MPIDense, 122486d161a7SShri Abhyankar 0, 122586d161a7SShri Abhyankar 0, 122686d161a7SShri Abhyankar /*109*/ 0, 122786d161a7SShri Abhyankar 0, 122886d161a7SShri Abhyankar 0, 122986d161a7SShri Abhyankar 0, 12303b49f96aSBarry Smith MatMissingDiagonal_MPIDense, 123186d161a7SShri Abhyankar /*114*/ 0, 123286d161a7SShri Abhyankar 0, 123386d161a7SShri Abhyankar 0, 123486d161a7SShri Abhyankar 0, 123586d161a7SShri Abhyankar 0, 123686d161a7SShri Abhyankar /*119*/ 0, 123786d161a7SShri Abhyankar 0, 123886d161a7SShri Abhyankar 0, 12390716a85fSBarry Smith 0, 12400716a85fSBarry Smith 0, 12410716a85fSBarry Smith /*124*/ 0, 12423964eb88SJed Brown MatGetColumnNorms_MPIDense, 12433964eb88SJed Brown 0, 12443964eb88SJed Brown 0, 12453964eb88SJed Brown 0, 12463964eb88SJed Brown /*129*/ 0, 1247cb20be35SHong Zhang MatTransposeMatMult_MPIDense_MPIDense, 1248cb20be35SHong Zhang MatTransposeMatMultSymbolic_MPIDense_MPIDense, 1249cb20be35SHong Zhang MatTransposeMatMultNumeric_MPIDense_MPIDense, 12503964eb88SJed Brown 0, 12513964eb88SJed Brown /*134*/ 0, 12523964eb88SJed Brown 0, 12533964eb88SJed Brown 0, 12543964eb88SJed Brown 0, 12553964eb88SJed Brown 0, 12563964eb88SJed Brown /*139*/ 0, 1257f9426fe0SMark Adams 0, 12583964eb88SJed Brown 0 1259ba337c44SJed Brown }; 12608965ea79SLois Curfman McInnes 12614a2ae208SSatish Balay #undef __FUNCT__ 1262a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIDenseSetPreallocation_MPIDense" 12637087cfbeSBarry Smith PetscErrorCode MatMPIDenseSetPreallocation_MPIDense(Mat mat,PetscScalar *data) 1264a23d5eceSKris Buschelman { 1265a23d5eceSKris Buschelman Mat_MPIDense *a; 1266dfbe8321SBarry Smith PetscErrorCode ierr; 1267a23d5eceSKris Buschelman 1268a23d5eceSKris Buschelman PetscFunctionBegin; 1269a23d5eceSKris Buschelman mat->preallocated = PETSC_TRUE; 1270a23d5eceSKris Buschelman /* Note: For now, when data is specified above, this assumes the user correctly 1271a23d5eceSKris Buschelman allocates the local dense storage space. We should add error checking. */ 1272a23d5eceSKris Buschelman 1273a23d5eceSKris Buschelman a = (Mat_MPIDense*)mat->data; 127434ef9618SShri Abhyankar ierr = PetscLayoutSetUp(mat->rmap);CHKERRQ(ierr); 127534ef9618SShri Abhyankar ierr = PetscLayoutSetUp(mat->cmap);CHKERRQ(ierr); 127634ef9618SShri Abhyankar a->nvec = mat->cmap->n; 127734ef9618SShri Abhyankar 1278f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&a->A);CHKERRQ(ierr); 1279d0f46423SBarry Smith ierr = MatSetSizes(a->A,mat->rmap->n,mat->cmap->N,mat->rmap->n,mat->cmap->N);CHKERRQ(ierr); 12805c5985e7SKris Buschelman ierr = MatSetType(a->A,MATSEQDENSE);CHKERRQ(ierr); 12815c5985e7SKris Buschelman ierr = MatSeqDenseSetPreallocation(a->A,data);CHKERRQ(ierr); 12823bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 1283a23d5eceSKris Buschelman PetscFunctionReturn(0); 1284a23d5eceSKris Buschelman } 1285a23d5eceSKris Buschelman 128665b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 1287a23d5eceSKris Buschelman #undef __FUNCT__ 12888baccfbdSHong Zhang #define __FUNCT__ "MatConvert_MPIDense_Elemental" 1289cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIDense_Elemental(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 12908baccfbdSHong Zhang { 12918ea901baSHong Zhang Mat mat_elemental; 12928ea901baSHong Zhang PetscErrorCode ierr; 129332d7a744SHong Zhang PetscScalar *v; 129432d7a744SHong Zhang PetscInt m=A->rmap->n,N=A->cmap->N,rstart=A->rmap->rstart,i,*rows,*cols; 12958ea901baSHong Zhang 12968baccfbdSHong Zhang PetscFunctionBegin; 1297378336b6SHong Zhang if (reuse == MAT_REUSE_MATRIX) { 1298378336b6SHong Zhang mat_elemental = *newmat; 1299378336b6SHong Zhang ierr = MatZeroEntries(*newmat);CHKERRQ(ierr); 1300378336b6SHong Zhang } else { 1301378336b6SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental);CHKERRQ(ierr); 1302378336b6SHong Zhang ierr = MatSetSizes(mat_elemental,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 1303378336b6SHong Zhang ierr = MatSetType(mat_elemental,MATELEMENTAL);CHKERRQ(ierr); 1304378336b6SHong Zhang ierr = MatSetUp(mat_elemental);CHKERRQ(ierr); 130532d7a744SHong Zhang ierr = MatSetOption(mat_elemental,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 1306378336b6SHong Zhang } 1307378336b6SHong Zhang 130832d7a744SHong Zhang ierr = PetscMalloc2(m,&rows,N,&cols);CHKERRQ(ierr); 130932d7a744SHong Zhang for (i=0; i<N; i++) cols[i] = i; 131032d7a744SHong Zhang for (i=0; i<m; i++) rows[i] = rstart + i; 13118ea901baSHong Zhang 13128ea901baSHong Zhang /* PETSc-Elemental interaface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */ 131332d7a744SHong Zhang ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr); 131432d7a744SHong Zhang ierr = MatSetValues(mat_elemental,m,rows,N,cols,v,ADD_VALUES);CHKERRQ(ierr); 13158ea901baSHong Zhang ierr = MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 13168ea901baSHong Zhang ierr = MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 131732d7a744SHong Zhang ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr); 131832d7a744SHong Zhang ierr = PetscFree2(rows,cols);CHKERRQ(ierr); 13198ea901baSHong Zhang 1320511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 132128be2f97SBarry Smith ierr = MatHeaderReplace(A,&mat_elemental);CHKERRQ(ierr); 13228ea901baSHong Zhang } else { 13238ea901baSHong Zhang *newmat = mat_elemental; 13248ea901baSHong Zhang } 13258baccfbdSHong Zhang PetscFunctionReturn(0); 13268baccfbdSHong Zhang } 132765b80a83SHong Zhang #endif 13288baccfbdSHong Zhang 13298baccfbdSHong Zhang #undef __FUNCT__ 13304a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIDense" 13318cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIDense(Mat mat) 1332273d9f13SBarry Smith { 1333273d9f13SBarry Smith Mat_MPIDense *a; 1334dfbe8321SBarry Smith PetscErrorCode ierr; 1335273d9f13SBarry Smith 1336273d9f13SBarry Smith PetscFunctionBegin; 1337b00a9115SJed Brown ierr = PetscNewLog(mat,&a);CHKERRQ(ierr); 1338b0a32e0cSBarry Smith mat->data = (void*)a; 1339273d9f13SBarry Smith ierr = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1340273d9f13SBarry Smith 1341273d9f13SBarry Smith mat->insertmode = NOT_SET_VALUES; 1342ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&a->rank);CHKERRQ(ierr); 1343ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&a->size);CHKERRQ(ierr); 1344273d9f13SBarry Smith 1345273d9f13SBarry Smith /* build cache for off array entries formed */ 1346273d9f13SBarry Smith a->donotstash = PETSC_FALSE; 13472205254eSKarl Rupp 1348ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)mat),1,&mat->stash);CHKERRQ(ierr); 1349273d9f13SBarry Smith 1350273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 1351273d9f13SBarry Smith a->lvec = 0; 1352273d9f13SBarry Smith a->Mvctx = 0; 1353273d9f13SBarry Smith a->roworiented = PETSC_TRUE; 1354273d9f13SBarry Smith 1355bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",MatDenseGetArray_MPIDense);CHKERRQ(ierr); 1356bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",MatDenseRestoreArray_MPIDense);CHKERRQ(ierr); 13578baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 13588baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",MatConvert_MPIDense_Elemental);CHKERRQ(ierr); 13598baccfbdSHong Zhang #endif 1360bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C",MatGetDiagonalBlock_MPIDense);CHKERRQ(ierr); 1361bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",MatMPIDenseSetPreallocation_MPIDense);CHKERRQ(ierr); 1362bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMult_mpiaij_mpidense_C",MatMatMult_MPIAIJ_MPIDense);CHKERRQ(ierr); 1363bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C",MatMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr); 1364bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C",MatMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr); 13658949adfdSHong Zhang 13668949adfdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMult_mpiaij_mpidense_C",MatTransposeMatMult_MPIAIJ_MPIDense);CHKERRQ(ierr); 13678949adfdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultSymbolic_mpiaij_mpidense_C",MatTransposeMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr); 13688949adfdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultNumeric_mpiaij_mpidense_C",MatTransposeMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr); 136938aed534SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)mat,MATMPIDENSE);CHKERRQ(ierr); 1370273d9f13SBarry Smith PetscFunctionReturn(0); 1371273d9f13SBarry Smith } 1372273d9f13SBarry Smith 1373209238afSKris Buschelman /*MC 1374002d173eSKris Buschelman MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices. 1375209238afSKris Buschelman 1376209238afSKris Buschelman This matrix type is identical to MATSEQDENSE when constructed with a single process communicator, 1377209238afSKris Buschelman and MATMPIDENSE otherwise. 1378209238afSKris Buschelman 1379209238afSKris Buschelman Options Database Keys: 1380209238afSKris Buschelman . -mat_type dense - sets the matrix type to "dense" during a call to MatSetFromOptions() 1381209238afSKris Buschelman 1382209238afSKris Buschelman Level: beginner 1383209238afSKris Buschelman 138401b82886SBarry Smith 1385209238afSKris Buschelman .seealso: MatCreateMPIDense,MATSEQDENSE,MATMPIDENSE 1386209238afSKris Buschelman M*/ 1387209238afSKris Buschelman 13884a2ae208SSatish Balay #undef __FUNCT__ 13894a2ae208SSatish Balay #define __FUNCT__ "MatMPIDenseSetPreallocation" 1390273d9f13SBarry Smith /*@C 1391273d9f13SBarry Smith MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries 1392273d9f13SBarry Smith 1393273d9f13SBarry Smith Not collective 1394273d9f13SBarry Smith 1395273d9f13SBarry Smith Input Parameters: 13961c4f3114SJed Brown . B - the matrix 13970298fd71SBarry Smith - data - optional location of matrix data. Set data=NULL for PETSc 1398273d9f13SBarry Smith to control all matrix memory allocation. 1399273d9f13SBarry Smith 1400273d9f13SBarry Smith Notes: 1401273d9f13SBarry Smith The dense format is fully compatible with standard Fortran 77 1402273d9f13SBarry Smith storage by columns. 1403273d9f13SBarry Smith 1404273d9f13SBarry Smith The data input variable is intended primarily for Fortran programmers 1405273d9f13SBarry Smith who wish to allocate their own matrix memory space. Most users should 14060298fd71SBarry Smith set data=NULL. 1407273d9f13SBarry Smith 1408273d9f13SBarry Smith Level: intermediate 1409273d9f13SBarry Smith 1410273d9f13SBarry Smith .keywords: matrix,dense, parallel 1411273d9f13SBarry Smith 1412273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 1413273d9f13SBarry Smith @*/ 14141c4f3114SJed Brown PetscErrorCode MatMPIDenseSetPreallocation(Mat B,PetscScalar *data) 1415273d9f13SBarry Smith { 14164ac538c5SBarry Smith PetscErrorCode ierr; 1417273d9f13SBarry Smith 1418273d9f13SBarry Smith PetscFunctionBegin; 14191c4f3114SJed Brown ierr = PetscTryMethod(B,"MatMPIDenseSetPreallocation_C",(Mat,PetscScalar*),(B,data));CHKERRQ(ierr); 1420273d9f13SBarry Smith PetscFunctionReturn(0); 1421273d9f13SBarry Smith } 1422273d9f13SBarry Smith 14234a2ae208SSatish Balay #undef __FUNCT__ 142469b1f4b7SBarry Smith #define __FUNCT__ "MatCreateDense" 14258965ea79SLois Curfman McInnes /*@C 142669b1f4b7SBarry Smith MatCreateDense - Creates a parallel matrix in dense format. 14278965ea79SLois Curfman McInnes 1428db81eaa0SLois Curfman McInnes Collective on MPI_Comm 1429db81eaa0SLois Curfman McInnes 14308965ea79SLois Curfman McInnes Input Parameters: 1431db81eaa0SLois Curfman McInnes + comm - MPI communicator 14328965ea79SLois Curfman McInnes . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1433db81eaa0SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 14348965ea79SLois Curfman McInnes . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 1435db81eaa0SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 14366cfe35ddSJose E. Roman - data - optional location of matrix data. Set data=NULL (PETSC_NULL_SCALAR for Fortran users) for PETSc 1437dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 14388965ea79SLois Curfman McInnes 14398965ea79SLois Curfman McInnes Output Parameter: 1440477f1c0bSLois Curfman McInnes . A - the matrix 14418965ea79SLois Curfman McInnes 1442b259b22eSLois Curfman McInnes Notes: 144339ddd567SLois Curfman McInnes The dense format is fully compatible with standard Fortran 77 144439ddd567SLois Curfman McInnes storage by columns. 14458965ea79SLois Curfman McInnes 144618f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 144718f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 14486cfe35ddSJose E. Roman set data=NULL (PETSC_NULL_SCALAR for Fortran users). 144918f449edSLois Curfman McInnes 14508965ea79SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 14518965ea79SLois Curfman McInnes (possibly both). 14528965ea79SLois Curfman McInnes 1453027ccd11SLois Curfman McInnes Level: intermediate 1454027ccd11SLois Curfman McInnes 145539ddd567SLois Curfman McInnes .keywords: matrix,dense, parallel 14568965ea79SLois Curfman McInnes 145739ddd567SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 14588965ea79SLois Curfman McInnes @*/ 145969b1f4b7SBarry Smith PetscErrorCode MatCreateDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 14608965ea79SLois Curfman McInnes { 14616849ba73SBarry Smith PetscErrorCode ierr; 146213f74950SBarry Smith PetscMPIInt size; 14638965ea79SLois Curfman McInnes 14643a40ed3dSBarry Smith PetscFunctionBegin; 1465f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 1466f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 1467273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1468273d9f13SBarry Smith if (size > 1) { 1469273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIDENSE);CHKERRQ(ierr); 1470273d9f13SBarry Smith ierr = MatMPIDenseSetPreallocation(*A,data);CHKERRQ(ierr); 14716cfe35ddSJose E. Roman if (data) { /* user provided data array, so no need to assemble */ 14726cfe35ddSJose E. Roman ierr = MatSetUpMultiply_MPIDense(*A);CHKERRQ(ierr); 14736cfe35ddSJose E. Roman (*A)->assembled = PETSC_TRUE; 14746cfe35ddSJose E. Roman } 1475273d9f13SBarry Smith } else { 1476273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr); 1477273d9f13SBarry Smith ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr); 14788c469469SLois Curfman McInnes } 14793a40ed3dSBarry Smith PetscFunctionReturn(0); 14808965ea79SLois Curfman McInnes } 14818965ea79SLois Curfman McInnes 14824a2ae208SSatish Balay #undef __FUNCT__ 14834a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIDense" 14846849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat) 14858965ea79SLois Curfman McInnes { 14868965ea79SLois Curfman McInnes Mat mat; 14873501a2bdSLois Curfman McInnes Mat_MPIDense *a,*oldmat = (Mat_MPIDense*)A->data; 1488dfbe8321SBarry Smith PetscErrorCode ierr; 14898965ea79SLois Curfman McInnes 14903a40ed3dSBarry Smith PetscFunctionBegin; 14918965ea79SLois Curfman McInnes *newmat = 0; 1492ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&mat);CHKERRQ(ierr); 1493d0f46423SBarry Smith ierr = MatSetSizes(mat,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 14947adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)A)->type_name);CHKERRQ(ierr); 1495834f8fabSBarry Smith a = (Mat_MPIDense*)mat->data; 1496e04c1aa4SHong Zhang ierr = PetscMemcpy(mat->ops,A->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 14975aa7edbeSHong Zhang 1498d5f3da31SBarry Smith mat->factortype = A->factortype; 1499c456f294SBarry Smith mat->assembled = PETSC_TRUE; 1500273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 15018965ea79SLois Curfman McInnes 15028965ea79SLois Curfman McInnes a->size = oldmat->size; 15038965ea79SLois Curfman McInnes a->rank = oldmat->rank; 1504e0fa3b82SLois Curfman McInnes mat->insertmode = NOT_SET_VALUES; 1505b9b97703SBarry Smith a->nvec = oldmat->nvec; 15063782ba37SSatish Balay a->donotstash = oldmat->donotstash; 1507e04c1aa4SHong Zhang 15081e1e43feSBarry Smith ierr = PetscLayoutReference(A->rmap,&mat->rmap);CHKERRQ(ierr); 15091e1e43feSBarry Smith ierr = PetscLayoutReference(A->cmap,&mat->cmap);CHKERRQ(ierr); 15108965ea79SLois Curfman McInnes 1511329f5518SBarry Smith ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 15125609ef8eSBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 15133bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 151401b82886SBarry Smith 15158965ea79SLois Curfman McInnes *newmat = mat; 15163a40ed3dSBarry Smith PetscFunctionReturn(0); 15178965ea79SLois Curfman McInnes } 15188965ea79SLois Curfman McInnes 15194a2ae208SSatish Balay #undef __FUNCT__ 15205bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPIDense_DenseInFile" 15219d36ed5fSBarry Smith PetscErrorCode MatLoad_MPIDense_DenseInFile(MPI_Comm comm,PetscInt fd,PetscInt M,PetscInt N,Mat newmat) 152286d161a7SShri Abhyankar { 152386d161a7SShri Abhyankar PetscErrorCode ierr; 152486d161a7SShri Abhyankar PetscMPIInt rank,size; 152574c13d95SBarry Smith const PetscInt *rowners; 152674c13d95SBarry Smith PetscInt i,m,n,nz,j,mMax; 152786d161a7SShri Abhyankar PetscScalar *array,*vals,*vals_ptr; 15289d36ed5fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)newmat->data; 152986d161a7SShri Abhyankar 153086d161a7SShri Abhyankar PetscFunctionBegin; 153186d161a7SShri Abhyankar ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 153286d161a7SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 153386d161a7SShri Abhyankar 153474c13d95SBarry Smith /* determine ownership of rows and columns */ 153574c13d95SBarry Smith m = (newmat->rmap->n < 0) ? PETSC_DECIDE : newmat->rmap->n; 153674c13d95SBarry Smith n = (newmat->cmap->n < 0) ? PETSC_DECIDE : newmat->cmap->n; 153786d161a7SShri Abhyankar 153874c13d95SBarry Smith ierr = MatSetSizes(newmat,m,n,M,N);CHKERRQ(ierr); 15399d36ed5fSBarry Smith if (!a->A || !((Mat_SeqDense*)(a->A->data))->user_alloc) { 15400298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr); 15419d36ed5fSBarry Smith } 15428c778c55SBarry Smith ierr = MatDenseGetArray(newmat,&array);CHKERRQ(ierr); 154349467e7dSBarry Smith ierr = MatGetLocalSize(newmat,&m,NULL);CHKERRQ(ierr); 154474c13d95SBarry Smith ierr = MatGetOwnershipRanges(newmat,&rowners);CHKERRQ(ierr); 1545396e826eSBarry Smith ierr = MPI_Reduce(&m,&mMax,1,MPIU_INT,MPI_MAX,0,comm);CHKERRQ(ierr); 154686d161a7SShri Abhyankar if (!rank) { 15479d36ed5fSBarry Smith ierr = PetscMalloc1(mMax*N,&vals);CHKERRQ(ierr); 154886d161a7SShri Abhyankar 154986d161a7SShri Abhyankar /* read in my part of the matrix numerical values */ 155086d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,vals,m*N,PETSC_SCALAR);CHKERRQ(ierr); 155186d161a7SShri Abhyankar 155286d161a7SShri Abhyankar /* insert into matrix-by row (this is why cannot directly read into array */ 155386d161a7SShri Abhyankar vals_ptr = vals; 155486d161a7SShri Abhyankar for (i=0; i<m; i++) { 155586d161a7SShri Abhyankar for (j=0; j<N; j++) { 155686d161a7SShri Abhyankar array[i + j*m] = *vals_ptr++; 155786d161a7SShri Abhyankar } 155886d161a7SShri Abhyankar } 155986d161a7SShri Abhyankar 156086d161a7SShri Abhyankar /* read in other processors and ship out */ 156186d161a7SShri Abhyankar for (i=1; i<size; i++) { 156286d161a7SShri Abhyankar nz = (rowners[i+1] - rowners[i])*N; 156386d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 1564a25532f0SBarry Smith ierr = MPIULong_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)(newmat))->tag,comm);CHKERRQ(ierr); 156586d161a7SShri Abhyankar } 156686d161a7SShri Abhyankar } else { 156786d161a7SShri Abhyankar /* receive numeric values */ 1568785e854fSJed Brown ierr = PetscMalloc1(m*N,&vals);CHKERRQ(ierr); 156986d161a7SShri Abhyankar 157086d161a7SShri Abhyankar /* receive message of values*/ 1571a25532f0SBarry Smith ierr = MPIULong_Recv(vals,m*N,MPIU_SCALAR,0,((PetscObject)(newmat))->tag,comm);CHKERRQ(ierr); 157286d161a7SShri Abhyankar 157386d161a7SShri Abhyankar /* insert into matrix-by row (this is why cannot directly read into array */ 157486d161a7SShri Abhyankar vals_ptr = vals; 157586d161a7SShri Abhyankar for (i=0; i<m; i++) { 157686d161a7SShri Abhyankar for (j=0; j<N; j++) { 157786d161a7SShri Abhyankar array[i + j*m] = *vals_ptr++; 157886d161a7SShri Abhyankar } 157986d161a7SShri Abhyankar } 158086d161a7SShri Abhyankar } 15818c778c55SBarry Smith ierr = MatDenseRestoreArray(newmat,&array);CHKERRQ(ierr); 158286d161a7SShri Abhyankar ierr = PetscFree(vals);CHKERRQ(ierr); 158386d161a7SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 158486d161a7SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 158586d161a7SShri Abhyankar PetscFunctionReturn(0); 158686d161a7SShri Abhyankar } 158786d161a7SShri Abhyankar 158886d161a7SShri Abhyankar #undef __FUNCT__ 15895bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPIDense" 1590112444f4SShri Abhyankar PetscErrorCode MatLoad_MPIDense(Mat newmat,PetscViewer viewer) 159186d161a7SShri Abhyankar { 1592dfdea288SBarry Smith Mat_MPIDense *a; 159386d161a7SShri Abhyankar PetscScalar *vals,*svals; 1594ce94432eSBarry Smith MPI_Comm comm; 159586d161a7SShri Abhyankar MPI_Status status; 159649467e7dSBarry Smith PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*rowners,*sndcounts,m,n,maxnz; 159786d161a7SShri Abhyankar PetscInt header[4],*rowlengths = 0,M,N,*cols; 159849467e7dSBarry Smith PetscInt *ourlens,*procsnz = 0,jj,*mycols,*smycols; 15999d36ed5fSBarry Smith PetscInt i,nz,j,rstart,rend; 160086d161a7SShri Abhyankar int fd; 160186d161a7SShri Abhyankar PetscErrorCode ierr; 160286d161a7SShri Abhyankar 160386d161a7SShri Abhyankar PetscFunctionBegin; 1604c98fd787SBarry Smith /* force binary viewer to load .info file if it has not yet done so */ 1605c98fd787SBarry Smith ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr); 1606ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr); 160786d161a7SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 160886d161a7SShri Abhyankar ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 160986d161a7SShri Abhyankar ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 16105872f025SBarry Smith if (!rank) { 161186d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr); 161286d161a7SShri Abhyankar if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 161386d161a7SShri Abhyankar } 161486d161a7SShri Abhyankar ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 161586d161a7SShri Abhyankar M = header[1]; N = header[2]; nz = header[3]; 161686d161a7SShri Abhyankar 161786d161a7SShri Abhyankar /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */ 16189d36ed5fSBarry Smith if (newmat->rmap->N < 0) newmat->rmap->N = M; 16199d36ed5fSBarry Smith if (newmat->cmap->N < 0) newmat->cmap->N = N; 162086d161a7SShri Abhyankar 16219d36ed5fSBarry Smith if (newmat->rmap->N != M) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%D) and input matrix has (%D)",M,newmat->rmap->N); 16229d36ed5fSBarry Smith if (newmat->cmap->N != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%D) and input matrix has (%D)",N,newmat->cmap->N); 162386d161a7SShri Abhyankar 162486d161a7SShri Abhyankar /* 162586d161a7SShri Abhyankar Handle case where matrix is stored on disk as a dense matrix 162686d161a7SShri Abhyankar */ 162786d161a7SShri Abhyankar if (nz == MATRIX_BINARY_FORMAT_DENSE) { 16289d36ed5fSBarry Smith ierr = MatLoad_MPIDense_DenseInFile(comm,fd,M,N,newmat);CHKERRQ(ierr); 162986d161a7SShri Abhyankar PetscFunctionReturn(0); 163086d161a7SShri Abhyankar } 163186d161a7SShri Abhyankar 163286d161a7SShri Abhyankar /* determine ownership of all rows */ 16332205254eSKarl Rupp if (newmat->rmap->n < 0) { 16342205254eSKarl Rupp ierr = PetscMPIIntCast(M/size + ((M % size) > rank),&m);CHKERRQ(ierr); 16352205254eSKarl Rupp } else { 16362205254eSKarl Rupp ierr = PetscMPIIntCast(newmat->rmap->n,&m);CHKERRQ(ierr); 16372205254eSKarl Rupp } 163849467e7dSBarry Smith if (newmat->cmap->n < 0) { 163949467e7dSBarry Smith n = PETSC_DECIDE; 164049467e7dSBarry Smith } else { 164149467e7dSBarry Smith ierr = PetscMPIIntCast(newmat->cmap->n,&n);CHKERRQ(ierr); 164249467e7dSBarry Smith } 164349467e7dSBarry Smith 1644854ce69bSBarry Smith ierr = PetscMalloc1(size+2,&rowners);CHKERRQ(ierr); 164586d161a7SShri Abhyankar ierr = MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 164686d161a7SShri Abhyankar rowners[0] = 0; 164786d161a7SShri Abhyankar for (i=2; i<=size; i++) { 164886d161a7SShri Abhyankar rowners[i] += rowners[i-1]; 164986d161a7SShri Abhyankar } 165086d161a7SShri Abhyankar rstart = rowners[rank]; 165186d161a7SShri Abhyankar rend = rowners[rank+1]; 165286d161a7SShri Abhyankar 165386d161a7SShri Abhyankar /* distribute row lengths to all processors */ 165449467e7dSBarry Smith ierr = PetscMalloc1(rend-rstart,&ourlens);CHKERRQ(ierr); 165586d161a7SShri Abhyankar if (!rank) { 1656785e854fSJed Brown ierr = PetscMalloc1(M,&rowlengths);CHKERRQ(ierr); 165786d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 1658785e854fSJed Brown ierr = PetscMalloc1(size,&sndcounts);CHKERRQ(ierr); 165986d161a7SShri Abhyankar for (i=0; i<size; i++) sndcounts[i] = rowners[i+1] - rowners[i]; 166086d161a7SShri Abhyankar ierr = MPI_Scatterv(rowlengths,sndcounts,rowners,MPIU_INT,ourlens,rend-rstart,MPIU_INT,0,comm);CHKERRQ(ierr); 166186d161a7SShri Abhyankar ierr = PetscFree(sndcounts);CHKERRQ(ierr); 166286d161a7SShri Abhyankar } else { 166386d161a7SShri Abhyankar ierr = MPI_Scatterv(0,0,0,MPIU_INT,ourlens,rend-rstart,MPIU_INT,0,comm);CHKERRQ(ierr); 166486d161a7SShri Abhyankar } 166586d161a7SShri Abhyankar 166686d161a7SShri Abhyankar if (!rank) { 166786d161a7SShri Abhyankar /* calculate the number of nonzeros on each processor */ 1668785e854fSJed Brown ierr = PetscMalloc1(size,&procsnz);CHKERRQ(ierr); 166986d161a7SShri Abhyankar ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 167086d161a7SShri Abhyankar for (i=0; i<size; i++) { 167186d161a7SShri Abhyankar for (j=rowners[i]; j< rowners[i+1]; j++) { 167286d161a7SShri Abhyankar procsnz[i] += rowlengths[j]; 167386d161a7SShri Abhyankar } 167486d161a7SShri Abhyankar } 167586d161a7SShri Abhyankar ierr = PetscFree(rowlengths);CHKERRQ(ierr); 167686d161a7SShri Abhyankar 167786d161a7SShri Abhyankar /* determine max buffer needed and allocate it */ 167886d161a7SShri Abhyankar maxnz = 0; 167986d161a7SShri Abhyankar for (i=0; i<size; i++) { 168086d161a7SShri Abhyankar maxnz = PetscMax(maxnz,procsnz[i]); 168186d161a7SShri Abhyankar } 1682785e854fSJed Brown ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr); 168386d161a7SShri Abhyankar 168486d161a7SShri Abhyankar /* read in my part of the matrix column indices */ 168586d161a7SShri Abhyankar nz = procsnz[0]; 1686785e854fSJed Brown ierr = PetscMalloc1(nz,&mycols);CHKERRQ(ierr); 168786d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 168886d161a7SShri Abhyankar 168986d161a7SShri Abhyankar /* read in every one elses and ship off */ 169086d161a7SShri Abhyankar for (i=1; i<size; i++) { 169186d161a7SShri Abhyankar nz = procsnz[i]; 169286d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 169386d161a7SShri Abhyankar ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 169486d161a7SShri Abhyankar } 169586d161a7SShri Abhyankar ierr = PetscFree(cols);CHKERRQ(ierr); 169686d161a7SShri Abhyankar } else { 169786d161a7SShri Abhyankar /* determine buffer space needed for message */ 169886d161a7SShri Abhyankar nz = 0; 169986d161a7SShri Abhyankar for (i=0; i<m; i++) { 170086d161a7SShri Abhyankar nz += ourlens[i]; 170186d161a7SShri Abhyankar } 1702854ce69bSBarry Smith ierr = PetscMalloc1(nz+1,&mycols);CHKERRQ(ierr); 170386d161a7SShri Abhyankar 170486d161a7SShri Abhyankar /* receive message of column indices*/ 170586d161a7SShri Abhyankar ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 170686d161a7SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 170786d161a7SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 170886d161a7SShri Abhyankar } 170986d161a7SShri Abhyankar 171049467e7dSBarry Smith ierr = MatSetSizes(newmat,m,n,M,N);CHKERRQ(ierr); 1711dfdea288SBarry Smith a = (Mat_MPIDense*)newmat->data; 17122e3566b0SBarry Smith if (!a->A || !((Mat_SeqDense*)(a->A->data))->user_alloc) { 17130298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr); 1714dfdea288SBarry Smith } 171586d161a7SShri Abhyankar 171686d161a7SShri Abhyankar if (!rank) { 1717785e854fSJed Brown ierr = PetscMalloc1(maxnz,&vals);CHKERRQ(ierr); 171886d161a7SShri Abhyankar 171986d161a7SShri Abhyankar /* read in my part of the matrix numerical values */ 172086d161a7SShri Abhyankar nz = procsnz[0]; 172186d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 172286d161a7SShri Abhyankar 172386d161a7SShri Abhyankar /* insert into matrix */ 172486d161a7SShri Abhyankar jj = rstart; 172586d161a7SShri Abhyankar smycols = mycols; 172686d161a7SShri Abhyankar svals = vals; 172786d161a7SShri Abhyankar for (i=0; i<m; i++) { 172886d161a7SShri Abhyankar ierr = MatSetValues(newmat,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 172986d161a7SShri Abhyankar smycols += ourlens[i]; 173086d161a7SShri Abhyankar svals += ourlens[i]; 173186d161a7SShri Abhyankar jj++; 173286d161a7SShri Abhyankar } 173386d161a7SShri Abhyankar 173486d161a7SShri Abhyankar /* read in other processors and ship out */ 173586d161a7SShri Abhyankar for (i=1; i<size; i++) { 173686d161a7SShri Abhyankar nz = procsnz[i]; 173786d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 173886d161a7SShri Abhyankar ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 173986d161a7SShri Abhyankar } 174086d161a7SShri Abhyankar ierr = PetscFree(procsnz);CHKERRQ(ierr); 174186d161a7SShri Abhyankar } else { 174286d161a7SShri Abhyankar /* receive numeric values */ 1743854ce69bSBarry Smith ierr = PetscMalloc1(nz+1,&vals);CHKERRQ(ierr); 174486d161a7SShri Abhyankar 174586d161a7SShri Abhyankar /* receive message of values*/ 174686d161a7SShri Abhyankar ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr); 174786d161a7SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 174886d161a7SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 174986d161a7SShri Abhyankar 175086d161a7SShri Abhyankar /* insert into matrix */ 175186d161a7SShri Abhyankar jj = rstart; 175286d161a7SShri Abhyankar smycols = mycols; 175386d161a7SShri Abhyankar svals = vals; 175486d161a7SShri Abhyankar for (i=0; i<m; i++) { 175586d161a7SShri Abhyankar ierr = MatSetValues(newmat,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 175686d161a7SShri Abhyankar smycols += ourlens[i]; 175786d161a7SShri Abhyankar svals += ourlens[i]; 175886d161a7SShri Abhyankar jj++; 175986d161a7SShri Abhyankar } 176086d161a7SShri Abhyankar } 176149467e7dSBarry Smith ierr = PetscFree(ourlens);CHKERRQ(ierr); 176286d161a7SShri Abhyankar ierr = PetscFree(vals);CHKERRQ(ierr); 176386d161a7SShri Abhyankar ierr = PetscFree(mycols);CHKERRQ(ierr); 176486d161a7SShri Abhyankar ierr = PetscFree(rowners);CHKERRQ(ierr); 176586d161a7SShri Abhyankar 176686d161a7SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 176786d161a7SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 176886d161a7SShri Abhyankar PetscFunctionReturn(0); 176986d161a7SShri Abhyankar } 177086d161a7SShri Abhyankar 177186d161a7SShri Abhyankar #undef __FUNCT__ 17726e4ee0c6SHong Zhang #define __FUNCT__ "MatEqual_MPIDense" 1773ace3abfcSBarry Smith PetscErrorCode MatEqual_MPIDense(Mat A,Mat B,PetscBool *flag) 17746e4ee0c6SHong Zhang { 17756e4ee0c6SHong Zhang Mat_MPIDense *matB = (Mat_MPIDense*)B->data,*matA = (Mat_MPIDense*)A->data; 17766e4ee0c6SHong Zhang Mat a,b; 1777ace3abfcSBarry Smith PetscBool flg; 17786e4ee0c6SHong Zhang PetscErrorCode ierr; 177990ace30eSBarry Smith 17806e4ee0c6SHong Zhang PetscFunctionBegin; 17816e4ee0c6SHong Zhang a = matA->A; 17826e4ee0c6SHong Zhang b = matB->A; 17836e4ee0c6SHong Zhang ierr = MatEqual(a,b,&flg);CHKERRQ(ierr); 1784b2566f29SBarry Smith ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 17856e4ee0c6SHong Zhang PetscFunctionReturn(0); 17866e4ee0c6SHong Zhang } 178790ace30eSBarry Smith 1788cb20be35SHong Zhang #undef __FUNCT__ 1789baa3c1c6SHong Zhang #define __FUNCT__ "MatDestroy_MatTransMatMult_MPIDense_MPIDense" 1790baa3c1c6SHong Zhang PetscErrorCode MatDestroy_MatTransMatMult_MPIDense_MPIDense(Mat A) 1791baa3c1c6SHong Zhang { 1792baa3c1c6SHong Zhang PetscErrorCode ierr; 1793baa3c1c6SHong Zhang Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1794baa3c1c6SHong Zhang Mat_TransMatMultDense *atb = a->atbdense; 1795baa3c1c6SHong Zhang 1796baa3c1c6SHong Zhang PetscFunctionBegin; 1797c5ef1628SHong Zhang ierr = PetscFree3(atb->sendbuf,atb->atbarray,atb->recvcounts);CHKERRQ(ierr); 1798baa3c1c6SHong Zhang ierr = (atb->destroy)(A);CHKERRQ(ierr); 1799baa3c1c6SHong Zhang ierr = PetscFree(atb);CHKERRQ(ierr); 1800baa3c1c6SHong Zhang PetscFunctionReturn(0); 1801baa3c1c6SHong Zhang } 1802baa3c1c6SHong Zhang 1803baa3c1c6SHong Zhang #undef __FUNCT__ 1804cb20be35SHong Zhang #define __FUNCT__ "MatTransposeMatMultNumeric_MPIDense_MPIDense" 1805cb20be35SHong Zhang PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 1806cb20be35SHong Zhang { 1807baa3c1c6SHong Zhang Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 1808660d5466SHong Zhang Mat_SeqDense *aseq=(Mat_SeqDense*)(a->A)->data, *bseq=(Mat_SeqDense*)(b->A)->data; 1809baa3c1c6SHong Zhang Mat_TransMatMultDense *atb = c->atbdense; 1810cb20be35SHong Zhang PetscErrorCode ierr; 1811cb20be35SHong Zhang MPI_Comm comm; 1812d5017740SHong Zhang PetscMPIInt rank,size,*recvcounts=atb->recvcounts; 1813c5ef1628SHong Zhang PetscScalar *carray,*atbarray=atb->atbarray,*sendbuf=atb->sendbuf; 1814d5017740SHong Zhang PetscInt i,cN=C->cmap->N,cM=C->rmap->N,proc,k,j; 1815660d5466SHong Zhang PetscScalar _DOne=1.0,_DZero=0.0; 1816adc7a786SHong Zhang PetscBLASInt am,an,bn,aN; 1817e68c0b26SHong Zhang const PetscInt *ranges; 1818cb20be35SHong Zhang 1819cb20be35SHong Zhang PetscFunctionBegin; 1820cb20be35SHong Zhang ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 1821cb20be35SHong Zhang ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 1822cb20be35SHong Zhang ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1823e68c0b26SHong Zhang 1824c5ef1628SHong Zhang /* compute atbarray = aseq^T * bseq */ 1825660d5466SHong Zhang ierr = PetscBLASIntCast(a->A->cmap->n,&an);CHKERRQ(ierr); 1826660d5466SHong Zhang ierr = PetscBLASIntCast(b->A->cmap->n,&bn);CHKERRQ(ierr); 1827660d5466SHong Zhang ierr = PetscBLASIntCast(a->A->rmap->n,&am);CHKERRQ(ierr); 1828adc7a786SHong Zhang ierr = PetscBLASIntCast(A->cmap->N,&aN);CHKERRQ(ierr); 1829adc7a786SHong Zhang PetscStackCallBLAS("BLASgemm",BLASgemm_("T","N",&an,&bn,&am,&_DOne,aseq->v,&aseq->lda,bseq->v,&bseq->lda,&_DZero,atbarray,&aN)); 1830cb20be35SHong Zhang 1831cb20be35SHong Zhang ierr = MatGetOwnershipRanges(C,&ranges);CHKERRQ(ierr); 1832c5ef1628SHong Zhang for (i=0; i<size; i++) recvcounts[i] = (ranges[i+1] - ranges[i])*cN; 1833cb20be35SHong Zhang 1834660d5466SHong Zhang /* arrange atbarray into sendbuf */ 1835cb20be35SHong Zhang k = 0; 1836cb20be35SHong Zhang for (proc=0; proc<size; proc++) { 1837baa3c1c6SHong Zhang for (j=0; j<cN; j++) { 1838c5ef1628SHong Zhang for (i=ranges[proc]; i<ranges[proc+1]; i++) sendbuf[k++] = atbarray[i+j*cM]; 1839cb20be35SHong Zhang } 1840cb20be35SHong Zhang } 1841c5ef1628SHong Zhang /* sum all atbarray to local values of C */ 1842660d5466SHong Zhang ierr = MatDenseGetArray(c->A,&carray);CHKERRQ(ierr); 18433462b7efSHong Zhang ierr = MPI_Reduce_scatter(sendbuf,carray,recvcounts,MPIU_SCALAR,MPIU_SUM,comm);CHKERRQ(ierr); 1844660d5466SHong Zhang ierr = MatDenseRestoreArray(c->A,&carray);CHKERRQ(ierr); 1845cb20be35SHong Zhang PetscFunctionReturn(0); 1846cb20be35SHong Zhang } 1847cb20be35SHong Zhang 1848cb20be35SHong Zhang #undef __FUNCT__ 1849cb20be35SHong Zhang #define __FUNCT__ "MatTransposeMatMultSymbolic_MPIDense_MPIDense" 1850cb20be35SHong Zhang PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat *C) 1851cb20be35SHong Zhang { 1852cb20be35SHong Zhang PetscErrorCode ierr; 1853baa3c1c6SHong Zhang Mat Cdense; 1854cb20be35SHong Zhang MPI_Comm comm; 1855baa3c1c6SHong Zhang PetscMPIInt size; 1856660d5466SHong Zhang PetscInt cm=A->cmap->n,cM,cN=B->cmap->N; 1857baa3c1c6SHong Zhang Mat_MPIDense *c; 1858baa3c1c6SHong Zhang Mat_TransMatMultDense *atb; 1859cb20be35SHong Zhang 1860cb20be35SHong Zhang PetscFunctionBegin; 1861baa3c1c6SHong Zhang ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 1862cb20be35SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) { 1863cb20be35SHong Zhang SETERRQ4(comm,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != B (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 1864cb20be35SHong Zhang } 1865cb20be35SHong Zhang 1866baa3c1c6SHong Zhang /* create matrix product Cdense */ 1867baa3c1c6SHong Zhang ierr = MatCreate(comm,&Cdense);CHKERRQ(ierr); 1868660d5466SHong Zhang ierr = MatSetSizes(Cdense,cm,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 1869baa3c1c6SHong Zhang ierr = MatSetType(Cdense,MATMPIDENSE);CHKERRQ(ierr); 1870baa3c1c6SHong Zhang ierr = MatMPIDenseSetPreallocation(Cdense,NULL);CHKERRQ(ierr); 1871baa3c1c6SHong Zhang ierr = MatAssemblyBegin(Cdense,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1872baa3c1c6SHong Zhang ierr = MatAssemblyEnd(Cdense,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1873baa3c1c6SHong Zhang *C = Cdense; 1874baa3c1c6SHong Zhang 1875baa3c1c6SHong Zhang /* create data structure for reuse Cdense */ 1876baa3c1c6SHong Zhang ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1877baa3c1c6SHong Zhang ierr = PetscNew(&atb);CHKERRQ(ierr); 1878660d5466SHong Zhang cM = Cdense->rmap->N; 1879c5ef1628SHong Zhang ierr = PetscMalloc3(cM*cN,&atb->sendbuf,cM*cN,&atb->atbarray,size,&atb->recvcounts);CHKERRQ(ierr); 1880baa3c1c6SHong Zhang 1881baa3c1c6SHong Zhang c = (Mat_MPIDense*)Cdense->data; 1882baa3c1c6SHong Zhang c->atbdense = atb; 1883baa3c1c6SHong Zhang atb->destroy = Cdense->ops->destroy; 1884baa3c1c6SHong Zhang Cdense->ops->destroy = MatDestroy_MatTransMatMult_MPIDense_MPIDense; 1885cb20be35SHong Zhang PetscFunctionReturn(0); 1886cb20be35SHong Zhang } 1887cb20be35SHong Zhang 1888cb20be35SHong Zhang #undef __FUNCT__ 1889cb20be35SHong Zhang #define __FUNCT__ "MatTransposeMatMult_MPIDense_MPIDense" 1890cb20be35SHong Zhang PetscErrorCode MatTransposeMatMult_MPIDense_MPIDense(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C) 1891cb20be35SHong Zhang { 1892cb20be35SHong Zhang PetscErrorCode ierr; 1893cb20be35SHong Zhang 1894cb20be35SHong Zhang PetscFunctionBegin; 1895cb20be35SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 1896cb20be35SHong Zhang ierr = MatTransposeMatMultSymbolic_MPIDense_MPIDense(A,B,fill,C);CHKERRQ(ierr); 1897cb20be35SHong Zhang } 1898cb20be35SHong Zhang ierr = MatTransposeMatMultNumeric_MPIDense_MPIDense(A,B,*C);CHKERRQ(ierr); 1899cb20be35SHong Zhang PetscFunctionReturn(0); 1900cb20be35SHong Zhang } 1901320f2790SHong Zhang 1902320f2790SHong Zhang #undef __FUNCT__ 1903320f2790SHong Zhang #define __FUNCT__ "MatDestroy_MatMatMult_MPIDense_MPIDense" 1904320f2790SHong Zhang PetscErrorCode MatDestroy_MatMatMult_MPIDense_MPIDense(Mat A) 1905320f2790SHong Zhang { 1906320f2790SHong Zhang PetscErrorCode ierr; 1907320f2790SHong Zhang Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1908320f2790SHong Zhang Mat_MatMultDense *ab = a->abdense; 1909320f2790SHong Zhang 1910320f2790SHong Zhang PetscFunctionBegin; 1911320f2790SHong Zhang ierr = MatDestroy(&ab->Ce);CHKERRQ(ierr); 1912320f2790SHong Zhang ierr = MatDestroy(&ab->Ae);CHKERRQ(ierr); 1913320f2790SHong Zhang ierr = MatDestroy(&ab->Be);CHKERRQ(ierr); 1914320f2790SHong Zhang 1915320f2790SHong Zhang ierr = (ab->destroy)(A);CHKERRQ(ierr); 1916320f2790SHong Zhang ierr = PetscFree(ab);CHKERRQ(ierr); 1917320f2790SHong Zhang PetscFunctionReturn(0); 1918320f2790SHong Zhang } 1919320f2790SHong Zhang 19205242a7b1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 1921320f2790SHong Zhang #undef __FUNCT__ 1922320f2790SHong Zhang #define __FUNCT__ "MatMatMultNumeric_MPIDense_MPIDense" 1923320f2790SHong Zhang PetscErrorCode MatMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 1924320f2790SHong Zhang { 1925320f2790SHong Zhang PetscErrorCode ierr; 1926320f2790SHong Zhang Mat_MPIDense *c=(Mat_MPIDense*)C->data; 1927320f2790SHong Zhang Mat_MatMultDense *ab=c->abdense; 1928320f2790SHong Zhang 1929320f2790SHong Zhang PetscFunctionBegin; 1930de0a22f0SHong Zhang ierr = MatConvert_MPIDense_Elemental(A,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Ae);CHKERRQ(ierr); 1931de0a22f0SHong Zhang ierr = MatConvert_MPIDense_Elemental(B,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Be);CHKERRQ(ierr); 1932320f2790SHong Zhang ierr = MatMatMultNumeric(ab->Ae,ab->Be,ab->Ce);CHKERRQ(ierr); 1933de0a22f0SHong Zhang ierr = MatConvert(ab->Ce,MATMPIDENSE,MAT_REUSE_MATRIX,&C);CHKERRQ(ierr); 1934320f2790SHong Zhang PetscFunctionReturn(0); 1935320f2790SHong Zhang } 1936320f2790SHong Zhang 1937320f2790SHong Zhang #undef __FUNCT__ 1938320f2790SHong Zhang #define __FUNCT__ "MatMatMultSymbolic_MPIDense_MPIDense" 1939320f2790SHong Zhang PetscErrorCode MatMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat *C) 1940320f2790SHong Zhang { 1941320f2790SHong Zhang PetscErrorCode ierr; 1942320f2790SHong Zhang Mat Ae,Be,Ce; 1943320f2790SHong Zhang Mat_MPIDense *c; 1944320f2790SHong Zhang Mat_MatMultDense *ab; 1945320f2790SHong Zhang 1946320f2790SHong Zhang PetscFunctionBegin; 1947320f2790SHong Zhang if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend) { 1948378336b6SHong Zhang SETERRQ4(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != B (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 1949320f2790SHong Zhang } 1950320f2790SHong Zhang 1951320f2790SHong Zhang /* convert A and B to Elemental matrices Ae and Be */ 1952320f2790SHong Zhang ierr = MatConvert(A,MATELEMENTAL,MAT_INITIAL_MATRIX, &Ae);CHKERRQ(ierr); 1953320f2790SHong Zhang ierr = MatConvert(B,MATELEMENTAL,MAT_INITIAL_MATRIX, &Be);CHKERRQ(ierr); 1954320f2790SHong Zhang 1955320f2790SHong Zhang /* Ce = Ae*Be */ 1956320f2790SHong Zhang ierr = MatMatMultSymbolic(Ae,Be,fill,&Ce);CHKERRQ(ierr); 1957320f2790SHong Zhang ierr = MatMatMultNumeric(Ae,Be,Ce);CHKERRQ(ierr); 1958320f2790SHong Zhang 1959320f2790SHong Zhang /* convert Ce to C */ 1960320f2790SHong Zhang ierr = MatConvert(Ce,MATMPIDENSE,MAT_INITIAL_MATRIX,C);CHKERRQ(ierr); 1961320f2790SHong Zhang 1962320f2790SHong Zhang /* create data structure for reuse Cdense */ 1963320f2790SHong Zhang ierr = PetscNew(&ab);CHKERRQ(ierr); 1964320f2790SHong Zhang c = (Mat_MPIDense*)(*C)->data; 1965320f2790SHong Zhang c->abdense = ab; 1966320f2790SHong Zhang 1967320f2790SHong Zhang ab->Ae = Ae; 1968320f2790SHong Zhang ab->Be = Be; 1969320f2790SHong Zhang ab->Ce = Ce; 1970320f2790SHong Zhang ab->destroy = (*C)->ops->destroy; 1971320f2790SHong Zhang (*C)->ops->destroy = MatDestroy_MatMatMult_MPIDense_MPIDense; 19729775878aSHong Zhang (*C)->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIDense; 1973320f2790SHong Zhang PetscFunctionReturn(0); 1974320f2790SHong Zhang } 1975320f2790SHong Zhang 1976320f2790SHong Zhang #undef __FUNCT__ 1977320f2790SHong Zhang #define __FUNCT__ "MatMatMult_MPIDense_MPIDense" 1978150d2497SBarry Smith PETSC_INTERN PetscErrorCode MatMatMult_MPIDense_MPIDense(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C) 1979320f2790SHong Zhang { 1980320f2790SHong Zhang PetscErrorCode ierr; 1981320f2790SHong Zhang 1982320f2790SHong Zhang PetscFunctionBegin; 1983320f2790SHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* simbolic product includes numeric product */ 198457299f2fSHong Zhang ierr = PetscLogEventBegin(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr); 1985320f2790SHong Zhang ierr = MatMatMultSymbolic_MPIDense_MPIDense(A,B,fill,C);CHKERRQ(ierr); 198657299f2fSHong Zhang ierr = PetscLogEventEnd(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr); 1987320f2790SHong Zhang } else { 198857299f2fSHong Zhang ierr = PetscLogEventBegin(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr); 1989320f2790SHong Zhang ierr = MatMatMultNumeric_MPIDense_MPIDense(A,B,*C);CHKERRQ(ierr); 199057299f2fSHong Zhang ierr = PetscLogEventEnd(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr); 1991320f2790SHong Zhang } 1992320f2790SHong Zhang PetscFunctionReturn(0); 1993320f2790SHong Zhang } 19945242a7b1SHong Zhang #endif 1995