1be1d678aSKris Buschelman 2ed3cc1f0SBarry Smith /* 3ed3cc1f0SBarry Smith Basic functions for basic parallel dense matrices. 4ed3cc1f0SBarry Smith */ 5ed3cc1f0SBarry Smith 6c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h> /*I "petscmat.h" I*/ 78949adfdSHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 8baa3c1c6SHong Zhang #include <petscblaslapack.h> 98965ea79SLois Curfman McInnes 10ab92ecdeSBarry Smith /*@ 11ab92ecdeSBarry Smith 12ab92ecdeSBarry Smith MatDenseGetLocalMatrix - For a MATMPIDENSE or MATSEQDENSE matrix returns the sequential 13ab92ecdeSBarry Smith matrix that represents the operator. For sequential matrices it returns itself. 14ab92ecdeSBarry Smith 15ab92ecdeSBarry Smith Input Parameter: 16ab92ecdeSBarry Smith . A - the Seq or MPI dense matrix 17ab92ecdeSBarry Smith 18ab92ecdeSBarry Smith Output Parameter: 19ab92ecdeSBarry Smith . B - the inner matrix 20ab92ecdeSBarry Smith 218e6c10adSSatish Balay Level: intermediate 228e6c10adSSatish Balay 23ab92ecdeSBarry Smith @*/ 24ab92ecdeSBarry Smith PetscErrorCode MatDenseGetLocalMatrix(Mat A,Mat *B) 25ab92ecdeSBarry Smith { 26ab92ecdeSBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 27ace3abfcSBarry Smith PetscBool flg; 28ab92ecdeSBarry Smith 29ab92ecdeSBarry Smith PetscFunctionBegin; 30d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 31d5ea218eSStefano Zampini PetscValidPointer(B,2); 329566063dSJacob Faibussowitsch PetscCall(PetscObjectBaseTypeCompare((PetscObject)A,MATMPIDENSE,&flg)); 332205254eSKarl Rupp if (flg) *B = mat->A; 34f140bc17SStefano Zampini else { 359566063dSJacob Faibussowitsch PetscCall(PetscObjectBaseTypeCompare((PetscObject)A,MATSEQDENSE,&flg)); 3628b400f6SJacob Faibussowitsch PetscCheck(flg,PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Not for matrix type %s",((PetscObject)A)->type_name); 37f140bc17SStefano Zampini *B = A; 38f140bc17SStefano Zampini } 39ab92ecdeSBarry Smith PetscFunctionReturn(0); 40ab92ecdeSBarry Smith } 41ab92ecdeSBarry Smith 42a76f77c3SStefano Zampini PetscErrorCode MatCopy_MPIDense(Mat A, Mat B, MatStructure s) 43a76f77c3SStefano Zampini { 44a76f77c3SStefano Zampini Mat_MPIDense *Amat = (Mat_MPIDense*)A->data; 45a76f77c3SStefano Zampini Mat_MPIDense *Bmat = (Mat_MPIDense*)B->data; 46a76f77c3SStefano Zampini 47a76f77c3SStefano Zampini PetscFunctionBegin; 489566063dSJacob Faibussowitsch PetscCall(MatCopy(Amat->A,Bmat->A,s)); 49a76f77c3SStefano Zampini PetscFunctionReturn(0); 50a76f77c3SStefano Zampini } 51a76f77c3SStefano Zampini 522f605a99SJose E. Roman PetscErrorCode MatShift_MPIDense(Mat A,PetscScalar alpha) 532f605a99SJose E. Roman { 542f605a99SJose E. Roman Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 552f605a99SJose E. Roman PetscInt j,lda,rstart = A->rmap->rstart,rend = A->rmap->rend,rend2; 562f605a99SJose E. Roman PetscScalar *v; 572f605a99SJose E. Roman 582f605a99SJose E. Roman PetscFunctionBegin; 592f605a99SJose E. Roman PetscCall(MatDenseGetArray(mat->A,&v)); 602f605a99SJose E. Roman PetscCall(MatDenseGetLDA(mat->A,&lda)); 612f605a99SJose E. Roman rend2 = PetscMin(rend,A->cmap->N); 622f605a99SJose E. Roman if (rend2>rstart) { 632f605a99SJose E. Roman for (j=rstart; j<rend2; j++) v[j-rstart+j*lda] += alpha; 642f605a99SJose E. Roman PetscCall(PetscLogFlops(rend2-rstart)); 652f605a99SJose E. Roman } 662f605a99SJose E. Roman PetscCall(MatDenseRestoreArray(mat->A,&v)); 672f605a99SJose E. Roman PetscFunctionReturn(0); 682f605a99SJose E. Roman } 692f605a99SJose E. Roman 70ba8c8a56SBarry Smith PetscErrorCode MatGetRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 71ba8c8a56SBarry Smith { 72ba8c8a56SBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 73d0f46423SBarry Smith PetscInt lrow,rstart = A->rmap->rstart,rend = A->rmap->rend; 74ba8c8a56SBarry Smith 75ba8c8a56SBarry Smith PetscFunctionBegin; 76aed4548fSBarry Smith PetscCheck(row >= rstart && row < rend,PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows"); 77ba8c8a56SBarry Smith lrow = row - rstart; 789566063dSJacob Faibussowitsch PetscCall(MatGetRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v)); 79ba8c8a56SBarry Smith PetscFunctionReturn(0); 80ba8c8a56SBarry Smith } 81ba8c8a56SBarry Smith 82637a0070SStefano Zampini PetscErrorCode MatRestoreRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 83ba8c8a56SBarry Smith { 84637a0070SStefano Zampini Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 85637a0070SStefano Zampini PetscInt lrow,rstart = A->rmap->rstart,rend = A->rmap->rend; 86ba8c8a56SBarry Smith 87ba8c8a56SBarry Smith PetscFunctionBegin; 88aed4548fSBarry Smith PetscCheck(row >= rstart && row < rend,PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows"); 89637a0070SStefano Zampini lrow = row - rstart; 909566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v)); 91ba8c8a56SBarry Smith PetscFunctionReturn(0); 92ba8c8a56SBarry Smith } 93ba8c8a56SBarry Smith 9411bd1e4dSLisandro Dalcin PetscErrorCode MatGetDiagonalBlock_MPIDense(Mat A,Mat *a) 950de54da6SSatish Balay { 960de54da6SSatish Balay Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 97d0f46423SBarry Smith PetscInt m = A->rmap->n,rstart = A->rmap->rstart; 9887828ca2SBarry Smith PetscScalar *array; 990de54da6SSatish Balay MPI_Comm comm; 1004b6ae80fSStefano Zampini PetscBool flg; 10111bd1e4dSLisandro Dalcin Mat B; 1020de54da6SSatish Balay 1030de54da6SSatish Balay PetscFunctionBegin; 1049566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A,&flg)); 10528b400f6SJacob Faibussowitsch PetscCheck(flg,PETSC_COMM_SELF,PETSC_ERR_SUP,"Only square matrices supported."); 1069566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)A,"DiagonalBlock",(PetscObject*)&B)); 107616b8fbbSStefano Zampini if (!B) { /* This should use MatDenseGetSubMatrix (not create), but we would need a call like MatRestoreDiagonalBlock */ 1084b6ae80fSStefano Zampini 1099566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)mdn->A,MATSEQDENSECUDA,&flg)); 11028b400f6SJacob Faibussowitsch PetscCheck(!flg,PETSC_COMM_SELF,PETSC_ERR_SUP,"Not coded for %s. Send an email to petsc-dev@mcs.anl.gov to request this feature",MATSEQDENSECUDA); 1119566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)(mdn->A),&comm)); 1129566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,&B)); 1139566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B,m,m,m,m)); 1149566063dSJacob Faibussowitsch PetscCall(MatSetType(B,((PetscObject)mdn->A)->type_name)); 1159566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(mdn->A,(const PetscScalar**)&array)); 1169566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(B,array+m*rstart)); 1179566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(mdn->A,(const PetscScalar**)&array)); 1189566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)A,"DiagonalBlock",(PetscObject)B)); 11911bd1e4dSLisandro Dalcin *a = B; 1209566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 1212205254eSKarl Rupp } else *a = B; 1220de54da6SSatish Balay PetscFunctionReturn(0); 1230de54da6SSatish Balay } 1240de54da6SSatish Balay 12513f74950SBarry Smith PetscErrorCode MatSetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],const PetscScalar v[],InsertMode addv) 1268965ea79SLois Curfman McInnes { 12739b7565bSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)mat->data; 128d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 129ace3abfcSBarry Smith PetscBool roworiented = A->roworiented; 1308965ea79SLois Curfman McInnes 1313a40ed3dSBarry Smith PetscFunctionBegin; 1328965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 1335ef9f2a5SBarry Smith if (idxm[i] < 0) continue; 13408401ef6SPierre Jolivet PetscCheck(idxm[i] < mat->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 1358965ea79SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 1368965ea79SLois Curfman McInnes row = idxm[i] - rstart; 13739b7565bSBarry Smith if (roworiented) { 1389566063dSJacob Faibussowitsch PetscCall(MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv)); 1393a40ed3dSBarry Smith } else { 1408965ea79SLois Curfman McInnes for (j=0; j<n; j++) { 1415ef9f2a5SBarry Smith if (idxn[j] < 0) continue; 14208401ef6SPierre Jolivet PetscCheck(idxn[j] < mat->cmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 1439566063dSJacob Faibussowitsch PetscCall(MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv)); 14439b7565bSBarry Smith } 1458965ea79SLois Curfman McInnes } 1462205254eSKarl Rupp } else if (!A->donotstash) { 1475080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 14839b7565bSBarry Smith if (roworiented) { 1499566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash,idxm[i],n,idxn,v+i*n,PETSC_FALSE)); 150d36fbae8SSatish Balay } else { 1519566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash,idxm[i],n,idxn,v+i,m,PETSC_FALSE)); 15239b7565bSBarry Smith } 153b49de8d1SLois Curfman McInnes } 154b49de8d1SLois Curfman McInnes } 1553a40ed3dSBarry Smith PetscFunctionReturn(0); 156b49de8d1SLois Curfman McInnes } 157b49de8d1SLois Curfman McInnes 15813f74950SBarry Smith PetscErrorCode MatGetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 159b49de8d1SLois Curfman McInnes { 160b49de8d1SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 161d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 162b49de8d1SLois Curfman McInnes 1633a40ed3dSBarry Smith PetscFunctionBegin; 164b49de8d1SLois Curfman McInnes for (i=0; i<m; i++) { 16554c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 16654c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 167b49de8d1SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 168b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 169b49de8d1SLois Curfman McInnes for (j=0; j<n; j++) { 17054c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 17154c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 1729566063dSJacob Faibussowitsch PetscCall(MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j)); 173b49de8d1SLois Curfman McInnes } 174e7e72b3dSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 1758965ea79SLois Curfman McInnes } 1763a40ed3dSBarry Smith PetscFunctionReturn(0); 1778965ea79SLois Curfman McInnes } 1788965ea79SLois Curfman McInnes 17949a6ff4bSBarry Smith static PetscErrorCode MatDenseGetLDA_MPIDense(Mat A,PetscInt *lda) 18049a6ff4bSBarry Smith { 18149a6ff4bSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 18249a6ff4bSBarry Smith 18349a6ff4bSBarry Smith PetscFunctionBegin; 1849566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,lda)); 18549a6ff4bSBarry Smith PetscFunctionReturn(0); 18649a6ff4bSBarry Smith } 18749a6ff4bSBarry Smith 188ad16ce7aSStefano Zampini static PetscErrorCode MatDenseSetLDA_MPIDense(Mat A,PetscInt lda) 189ad16ce7aSStefano Zampini { 190ad16ce7aSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 19117359960SJose E. Roman PetscBool iscuda; 192ad16ce7aSStefano Zampini 193ad16ce7aSStefano Zampini PetscFunctionBegin; 19417359960SJose E. Roman if (!a->A) { 19528b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1969566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->rmap)); 1979566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->cmap)); 1989566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF,&a->A)); 1999566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)a->A)); 2009566063dSJacob Faibussowitsch PetscCall(MatSetSizes(a->A,A->rmap->n,A->cmap->N,A->rmap->n,A->cmap->N)); 2019566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A,MATMPIDENSECUDA,&iscuda)); 2029566063dSJacob Faibussowitsch PetscCall(MatSetType(a->A,iscuda ? MATSEQDENSECUDA : MATSEQDENSE)); 20317359960SJose E. Roman } 2049566063dSJacob Faibussowitsch PetscCall(MatDenseSetLDA(a->A,lda)); 205ad16ce7aSStefano Zampini PetscFunctionReturn(0); 206ad16ce7aSStefano Zampini } 207ad16ce7aSStefano Zampini 208637a0070SStefano Zampini static PetscErrorCode MatDenseGetArray_MPIDense(Mat A,PetscScalar **array) 209ff14e315SSatish Balay { 210ff14e315SSatish Balay Mat_MPIDense *a = (Mat_MPIDense*)A->data; 211ff14e315SSatish Balay 2123a40ed3dSBarry Smith PetscFunctionBegin; 21328b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2149566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(a->A,array)); 2153a40ed3dSBarry Smith PetscFunctionReturn(0); 216ff14e315SSatish Balay } 217ff14e315SSatish Balay 218637a0070SStefano Zampini static PetscErrorCode MatDenseGetArrayRead_MPIDense(Mat A,const PetscScalar **array) 2198572280aSBarry Smith { 2208572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 2218572280aSBarry Smith 2228572280aSBarry Smith PetscFunctionBegin; 22328b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2249566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A,array)); 2258572280aSBarry Smith PetscFunctionReturn(0); 2268572280aSBarry Smith } 2278572280aSBarry Smith 2286947451fSStefano Zampini static PetscErrorCode MatDenseGetArrayWrite_MPIDense(Mat A,PetscScalar **array) 2296947451fSStefano Zampini { 2306947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 2316947451fSStefano Zampini 2326947451fSStefano Zampini PetscFunctionBegin; 23328b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2349566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(a->A,array)); 2356947451fSStefano Zampini PetscFunctionReturn(0); 2366947451fSStefano Zampini } 2376947451fSStefano Zampini 238637a0070SStefano Zampini static PetscErrorCode MatDensePlaceArray_MPIDense(Mat A,const PetscScalar *array) 239d3042a70SBarry Smith { 240d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 241d3042a70SBarry Smith 242d3042a70SBarry Smith PetscFunctionBegin; 24328b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 24428b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2459566063dSJacob Faibussowitsch PetscCall(MatDensePlaceArray(a->A,array)); 246d3042a70SBarry Smith PetscFunctionReturn(0); 247d3042a70SBarry Smith } 248d3042a70SBarry Smith 249d3042a70SBarry Smith static PetscErrorCode MatDenseResetArray_MPIDense(Mat A) 250d3042a70SBarry Smith { 251d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 252d3042a70SBarry Smith 253d3042a70SBarry Smith PetscFunctionBegin; 25428b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 25528b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2569566063dSJacob Faibussowitsch PetscCall(MatDenseResetArray(a->A)); 257d3042a70SBarry Smith PetscFunctionReturn(0); 258d3042a70SBarry Smith } 259d3042a70SBarry Smith 260d5ea218eSStefano Zampini static PetscErrorCode MatDenseReplaceArray_MPIDense(Mat A,const PetscScalar *array) 261d5ea218eSStefano Zampini { 262d5ea218eSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 263d5ea218eSStefano Zampini 264d5ea218eSStefano Zampini PetscFunctionBegin; 26528b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 26628b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2679566063dSJacob Faibussowitsch PetscCall(MatDenseReplaceArray(a->A,array)); 268d5ea218eSStefano Zampini PetscFunctionReturn(0); 269d5ea218eSStefano Zampini } 270d5ea218eSStefano Zampini 2717dae84e0SHong Zhang static PetscErrorCode MatCreateSubMatrix_MPIDense(Mat A,IS isrow,IS iscol,MatReuse scall,Mat *B) 272ca3fa75bSLois Curfman McInnes { 273ca3fa75bSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data,*newmatd; 274637a0070SStefano Zampini PetscInt lda,i,j,rstart,rend,nrows,ncols,Ncols,nlrows,nlcols; 2755d0c19d7SBarry Smith const PetscInt *irow,*icol; 276637a0070SStefano Zampini const PetscScalar *v; 277637a0070SStefano Zampini PetscScalar *bv; 278ca3fa75bSLois Curfman McInnes Mat newmat; 2794aa3045dSJed Brown IS iscol_local; 28042a884f0SBarry Smith MPI_Comm comm_is,comm_mat; 281ca3fa75bSLois Curfman McInnes 282ca3fa75bSLois Curfman McInnes PetscFunctionBegin; 2839566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A,&comm_mat)); 2849566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)iscol,&comm_is)); 28508401ef6SPierre Jolivet PetscCheck(comm_mat == comm_is,PETSC_COMM_SELF,PETSC_ERR_ARG_NOTSAMECOMM,"IS communicator must match matrix communicator"); 28642a884f0SBarry Smith 2879566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol,&iscol_local)); 2889566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isrow,&irow)); 2899566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_local,&icol)); 2909566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow,&nrows)); 2919566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol,&ncols)); 2929566063dSJacob Faibussowitsch PetscCall(ISGetSize(iscol,&Ncols)); /* global number of columns, size of iscol_local */ 293ca3fa75bSLois Curfman McInnes 294ca3fa75bSLois Curfman McInnes /* No parallel redistribution currently supported! Should really check each index set 2957eba5e9cSLois Curfman McInnes to comfirm that it is OK. ... Currently supports only submatrix same partitioning as 2967eba5e9cSLois Curfman McInnes original matrix! */ 297ca3fa75bSLois Curfman McInnes 2989566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A,&nlrows,&nlcols)); 2999566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A,&rstart,&rend)); 300ca3fa75bSLois Curfman McInnes 301ca3fa75bSLois Curfman McInnes /* Check submatrix call */ 302ca3fa75bSLois Curfman McInnes if (scall == MAT_REUSE_MATRIX) { 303e32f2f54SBarry Smith /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */ 3047eba5e9cSLois Curfman McInnes /* Really need to test rows and column sizes! */ 305ca3fa75bSLois Curfman McInnes newmat = *B; 306ca3fa75bSLois Curfman McInnes } else { 307ca3fa75bSLois Curfman McInnes /* Create and fill new matrix */ 3089566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&newmat)); 3099566063dSJacob Faibussowitsch PetscCall(MatSetSizes(newmat,nrows,ncols,PETSC_DECIDE,Ncols)); 3109566063dSJacob Faibussowitsch PetscCall(MatSetType(newmat,((PetscObject)A)->type_name)); 3119566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(newmat,NULL)); 312ca3fa75bSLois Curfman McInnes } 313ca3fa75bSLois Curfman McInnes 314ca3fa75bSLois Curfman McInnes /* Now extract the data pointers and do the copy, column at a time */ 315ca3fa75bSLois Curfman McInnes newmatd = (Mat_MPIDense*)newmat->data; 3169566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(newmatd->A,&bv)); 3179566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(mat->A,&v)); 3189566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(mat->A,&lda)); 3194aa3045dSJed Brown for (i=0; i<Ncols; i++) { 320637a0070SStefano Zampini const PetscScalar *av = v + lda*icol[i]; 321ca3fa75bSLois Curfman McInnes for (j=0; j<nrows; j++) { 3227eba5e9cSLois Curfman McInnes *bv++ = av[irow[j] - rstart]; 323ca3fa75bSLois Curfman McInnes } 324ca3fa75bSLois Curfman McInnes } 3259566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(mat->A,&v)); 3269566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(newmatd->A,&bv)); 327ca3fa75bSLois Curfman McInnes 328ca3fa75bSLois Curfman McInnes /* Assemble the matrices so that the correct flags are set */ 3299566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY)); 3309566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY)); 331ca3fa75bSLois Curfman McInnes 332ca3fa75bSLois Curfman McInnes /* Free work space */ 3339566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isrow,&irow)); 3349566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_local,&icol)); 3359566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 336ca3fa75bSLois Curfman McInnes *B = newmat; 337ca3fa75bSLois Curfman McInnes PetscFunctionReturn(0); 338ca3fa75bSLois Curfman McInnes } 339ca3fa75bSLois Curfman McInnes 340637a0070SStefano Zampini PetscErrorCode MatDenseRestoreArray_MPIDense(Mat A,PetscScalar **array) 341ff14e315SSatish Balay { 34273a71a0fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 34373a71a0fSBarry Smith 3443a40ed3dSBarry Smith PetscFunctionBegin; 3459566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(a->A,array)); 3463a40ed3dSBarry Smith PetscFunctionReturn(0); 347ff14e315SSatish Balay } 348ff14e315SSatish Balay 349637a0070SStefano Zampini PetscErrorCode MatDenseRestoreArrayRead_MPIDense(Mat A,const PetscScalar **array) 3508572280aSBarry Smith { 3518572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 3528572280aSBarry Smith 3538572280aSBarry Smith PetscFunctionBegin; 3549566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A,array)); 3558572280aSBarry Smith PetscFunctionReturn(0); 3568572280aSBarry Smith } 3578572280aSBarry Smith 3586947451fSStefano Zampini PetscErrorCode MatDenseRestoreArrayWrite_MPIDense(Mat A,PetscScalar **array) 3596947451fSStefano Zampini { 3606947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 3616947451fSStefano Zampini 3626947451fSStefano Zampini PetscFunctionBegin; 3639566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(a->A,array)); 3646947451fSStefano Zampini PetscFunctionReturn(0); 3656947451fSStefano Zampini } 3666947451fSStefano Zampini 367dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode) 3688965ea79SLois Curfman McInnes { 36939ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 37013f74950SBarry Smith PetscInt nstash,reallocs; 3718965ea79SLois Curfman McInnes 3723a40ed3dSBarry Smith PetscFunctionBegin; 3734067683fSStefano Zampini if (mdn->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 3748965ea79SLois Curfman McInnes 3759566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range)); 3769566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs)); 3779566063dSJacob Faibussowitsch PetscCall(PetscInfo(mdn->A,"Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n",nstash,reallocs)); 3783a40ed3dSBarry Smith PetscFunctionReturn(0); 3798965ea79SLois Curfman McInnes } 3808965ea79SLois Curfman McInnes 381dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode) 3828965ea79SLois Curfman McInnes { 38339ddd567SLois Curfman McInnes Mat_MPIDense *mdn=(Mat_MPIDense*)mat->data; 38413f74950SBarry Smith PetscInt i,*row,*col,flg,j,rstart,ncols; 38513f74950SBarry Smith PetscMPIInt n; 38687828ca2SBarry Smith PetscScalar *val; 3878965ea79SLois Curfman McInnes 3883a40ed3dSBarry Smith PetscFunctionBegin; 389910cf402Sprj- if (!mdn->donotstash && !mat->nooffprocentries) { 3908965ea79SLois Curfman McInnes /* wait on receives */ 3917ef1d9bdSSatish Balay while (1) { 3929566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg)); 3937ef1d9bdSSatish Balay if (!flg) break; 3948965ea79SLois Curfman McInnes 3957ef1d9bdSSatish Balay for (i=0; i<n;) { 3967ef1d9bdSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 3972205254eSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 3982205254eSKarl Rupp if (row[j] != rstart) break; 3992205254eSKarl Rupp } 4007ef1d9bdSSatish Balay if (j < n) ncols = j-i; 4017ef1d9bdSSatish Balay else ncols = n-i; 4027ef1d9bdSSatish Balay /* Now assemble all these values with a single function call */ 4039566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,mat->insertmode)); 4047ef1d9bdSSatish Balay i = j; 4058965ea79SLois Curfman McInnes } 4067ef1d9bdSSatish Balay } 4079566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 408910cf402Sprj- } 4098965ea79SLois Curfman McInnes 4109566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mdn->A,mode)); 4119566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mdn->A,mode)); 4123a40ed3dSBarry Smith PetscFunctionReturn(0); 4138965ea79SLois Curfman McInnes } 4148965ea79SLois Curfman McInnes 415dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIDense(Mat A) 4168965ea79SLois Curfman McInnes { 41739ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 4183a40ed3dSBarry Smith 4193a40ed3dSBarry Smith PetscFunctionBegin; 4209566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 4213a40ed3dSBarry Smith PetscFunctionReturn(0); 4228965ea79SLois Curfman McInnes } 4238965ea79SLois Curfman McInnes 424637a0070SStefano Zampini PetscErrorCode MatZeroRows_MPIDense(Mat A,PetscInt n,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 4258965ea79SLois Curfman McInnes { 42639ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 427637a0070SStefano Zampini PetscInt i,len,*lrows; 428637a0070SStefano Zampini 429637a0070SStefano Zampini PetscFunctionBegin; 430637a0070SStefano Zampini /* get locally owned rows */ 4319566063dSJacob Faibussowitsch PetscCall(PetscLayoutMapLocal(A->rmap,n,rows,&len,&lrows,NULL)); 432637a0070SStefano Zampini /* fix right hand side if needed */ 433637a0070SStefano Zampini if (x && b) { 43497b48c8fSBarry Smith const PetscScalar *xx; 43597b48c8fSBarry Smith PetscScalar *bb; 4368965ea79SLois Curfman McInnes 4379566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 4389566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(b, &bb)); 439637a0070SStefano Zampini for (i=0;i<len;++i) bb[lrows[i]] = diag*xx[lrows[i]]; 4409566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 4419566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(b, &bb)); 44297b48c8fSBarry Smith } 4439566063dSJacob Faibussowitsch PetscCall(MatZeroRows(l->A,len,lrows,0.0,NULL,NULL)); 444e2eb51b1SBarry Smith if (diag != 0.0) { 445637a0070SStefano Zampini Vec d; 446b9679d65SBarry Smith 4479566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(A,NULL,&d)); 4489566063dSJacob Faibussowitsch PetscCall(VecSet(d,diag)); 4499566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet(A,d,INSERT_VALUES)); 4509566063dSJacob Faibussowitsch PetscCall(VecDestroy(&d)); 451b9679d65SBarry Smith } 4529566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 4533a40ed3dSBarry Smith PetscFunctionReturn(0); 4548965ea79SLois Curfman McInnes } 4558965ea79SLois Curfman McInnes 456cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMult_SeqDense(Mat,Vec,Vec); 457cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultAdd_SeqDense(Mat,Vec,Vec,Vec); 458cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTranspose_SeqDense(Mat,Vec,Vec); 459cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTransposeAdd_SeqDense(Mat,Vec,Vec,Vec); 460cc2e6a90SBarry Smith 461dfbe8321SBarry Smith PetscErrorCode MatMult_MPIDense(Mat mat,Vec xx,Vec yy) 4628965ea79SLois Curfman McInnes { 46339ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 464637a0070SStefano Zampini const PetscScalar *ax; 465637a0070SStefano Zampini PetscScalar *ay; 466d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 467c456f294SBarry Smith 4683a40ed3dSBarry Smith PetscFunctionBegin; 4696f08ad05SPierre Jolivet if (!mdn->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(mat)); 4709566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(xx,&ax,&axmtype)); 4719566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(mdn->lvec,&ay,&aymtype)); 4729566063dSJacob Faibussowitsch PetscCall(PetscSFBcastWithMemTypeBegin(mdn->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPI_REPLACE)); 4739566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ax,ay,MPI_REPLACE)); 4749566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(mdn->lvec,&ay)); 4759566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(xx,&ax)); 4769566063dSJacob Faibussowitsch PetscCall((*mdn->A->ops->mult)(mdn->A,mdn->lvec,yy)); 4773a40ed3dSBarry Smith PetscFunctionReturn(0); 4788965ea79SLois Curfman McInnes } 4798965ea79SLois Curfman McInnes 480dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz) 4818965ea79SLois Curfman McInnes { 48239ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 483637a0070SStefano Zampini const PetscScalar *ax; 484637a0070SStefano Zampini PetscScalar *ay; 485d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 486c456f294SBarry Smith 4873a40ed3dSBarry Smith PetscFunctionBegin; 4886f08ad05SPierre Jolivet if (!mdn->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(mat)); 4899566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(xx,&ax,&axmtype)); 4909566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(mdn->lvec,&ay,&aymtype)); 4919566063dSJacob Faibussowitsch PetscCall(PetscSFBcastWithMemTypeBegin(mdn->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPI_REPLACE)); 4929566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ax,ay,MPI_REPLACE)); 4939566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(mdn->lvec,&ay)); 4949566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(xx,&ax)); 4959566063dSJacob Faibussowitsch PetscCall((*mdn->A->ops->multadd)(mdn->A,mdn->lvec,yy,zz)); 4963a40ed3dSBarry Smith PetscFunctionReturn(0); 4978965ea79SLois Curfman McInnes } 4988965ea79SLois Curfman McInnes 499dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIDense(Mat A,Vec xx,Vec yy) 500096963f5SLois Curfman McInnes { 501096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 502637a0070SStefano Zampini const PetscScalar *ax; 503637a0070SStefano Zampini PetscScalar *ay; 504d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 505096963f5SLois Curfman McInnes 5063a40ed3dSBarry Smith PetscFunctionBegin; 5076f08ad05SPierre Jolivet if (!a->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); 5089566063dSJacob Faibussowitsch PetscCall(VecSet(yy,0.0)); 5099566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A,xx,a->lvec)); 5109566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(a->lvec,&ax,&axmtype)); 5119566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(yy,&ay,&aymtype)); 5129566063dSJacob Faibussowitsch PetscCall(PetscSFReduceWithMemTypeBegin(a->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPIU_SUM)); 5139566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM)); 5149566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(a->lvec,&ax)); 5159566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(yy,&ay)); 5163a40ed3dSBarry Smith PetscFunctionReturn(0); 517096963f5SLois Curfman McInnes } 518096963f5SLois Curfman McInnes 519dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz) 520096963f5SLois Curfman McInnes { 521096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 522637a0070SStefano Zampini const PetscScalar *ax; 523637a0070SStefano Zampini PetscScalar *ay; 524d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 525096963f5SLois Curfman McInnes 5263a40ed3dSBarry Smith PetscFunctionBegin; 5276f08ad05SPierre Jolivet if (!a->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); 5289566063dSJacob Faibussowitsch PetscCall(VecCopy(yy,zz)); 5299566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A,xx,a->lvec)); 5309566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(a->lvec,&ax,&axmtype)); 5319566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(zz,&ay,&aymtype)); 5329566063dSJacob Faibussowitsch PetscCall(PetscSFReduceWithMemTypeBegin(a->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPIU_SUM)); 5339566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM)); 5349566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(a->lvec,&ax)); 5359566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(zz,&ay)); 5363a40ed3dSBarry Smith PetscFunctionReturn(0); 537096963f5SLois Curfman McInnes } 538096963f5SLois Curfman McInnes 539dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIDense(Mat A,Vec v) 5408965ea79SLois Curfman McInnes { 54139ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 542637a0070SStefano Zampini PetscInt lda,len,i,n,m = A->rmap->n,radd; 54387828ca2SBarry Smith PetscScalar *x,zero = 0.0; 544637a0070SStefano Zampini const PetscScalar *av; 545ed3cc1f0SBarry Smith 5463a40ed3dSBarry Smith PetscFunctionBegin; 5479566063dSJacob Faibussowitsch PetscCall(VecSet(v,zero)); 5489566063dSJacob Faibussowitsch PetscCall(VecGetArray(v,&x)); 5499566063dSJacob Faibussowitsch PetscCall(VecGetSize(v,&n)); 55008401ef6SPierre Jolivet PetscCheck(n == A->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec"); 551d0f46423SBarry Smith len = PetscMin(a->A->rmap->n,a->A->cmap->n); 552d0f46423SBarry Smith radd = A->rmap->rstart*m; 5539566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A,&av)); 5549566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 55544cd7ae7SLois Curfman McInnes for (i=0; i<len; i++) { 556637a0070SStefano Zampini x[i] = av[radd + i*lda + i]; 557096963f5SLois Curfman McInnes } 5589566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A,&av)); 5599566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v,&x)); 5603a40ed3dSBarry Smith PetscFunctionReturn(0); 5618965ea79SLois Curfman McInnes } 5628965ea79SLois Curfman McInnes 563dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIDense(Mat mat) 5648965ea79SLois Curfman McInnes { 5653501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 566ed3cc1f0SBarry Smith 5673a40ed3dSBarry Smith PetscFunctionBegin; 568aa482453SBarry Smith #if defined(PETSC_USE_LOG) 569c0aa6a63SJacob Faibussowitsch PetscLogObjectState((PetscObject)mat,"Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT,mat->rmap->N,mat->cmap->N); 5708965ea79SLois Curfman McInnes #endif 5719566063dSJacob Faibussowitsch PetscCall(MatStashDestroy_Private(&mat->stash)); 57228b400f6SJacob Faibussowitsch PetscCheck(!mdn->vecinuse,PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 57328b400f6SJacob Faibussowitsch PetscCheck(!mdn->matinuse,PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 5749566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mdn->A)); 5759566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mdn->lvec)); 5769566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&mdn->Mvctx)); 5779566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mdn->cvec)); 5789566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mdn->cmat)); 57901b82886SBarry Smith 5809566063dSJacob Faibussowitsch PetscCall(PetscFree(mat->data)); 5819566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)mat,NULL)); 5828baccfbdSHong Zhang 5839566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",NULL)); 5849566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseSetLDA_C",NULL)); 5859566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",NULL)); 5869566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",NULL)); 5879566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",NULL)); 5889566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",NULL)); 5899566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayWrite_C",NULL)); 5909566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayWrite_C",NULL)); 5919566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",NULL)); 5929566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",NULL)); 5939566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseReplaceArray_C",NULL)); 5949566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpiaij_mpidense_C",NULL)); 5959566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_mpiaij_C",NULL)); 5968baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 5979566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",NULL)); 5988baccfbdSHong Zhang #endif 599d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 6009566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_scalapack_C",NULL)); 601d24d4204SJose E. Roman #endif 6029566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",NULL)); 6039566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaij_mpidense_C",NULL)); 6049566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaij_C",NULL)); 6056718818eSStefano Zampini #if defined (PETSC_HAVE_CUDA) 6069566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaijcusparse_mpidense_C",NULL)); 6079566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaijcusparse_C",NULL)); 6082e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_mpidensecuda_C",NULL)); 6092e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidensecuda_mpidense_C",NULL)); 6102e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaij_mpidensecuda_C",NULL)); 6112e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaijcusparse_mpidensecuda_C",NULL)); 6122e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidensecuda_mpiaij_C",NULL)); 6132e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidensecuda_mpiaijcusparse_C",NULL)); 6142e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseCUDAGetArray_C",NULL)); 6152e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseCUDAGetArrayRead_C",NULL)); 6162e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseCUDAGetArrayWrite_C",NULL)); 6172e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseCUDARestoreArray_C",NULL)); 6182e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseCUDARestoreArrayRead_C",NULL)); 6192e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseCUDARestoreArrayWrite_C",NULL)); 6202e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseCUDAPlaceArray_C",NULL)); 6212e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseCUDAResetArray_C",NULL)); 6222e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseCUDAReplaceArray_C",NULL)); 6236718818eSStefano Zampini #endif 6249566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",NULL)); 6259566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",NULL)); 6269566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",NULL)); 6279566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",NULL)); 6289566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",NULL)); 6299566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",NULL)); 6309566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",NULL)); 6319566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",NULL)); 6329566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetSubMatrix_C",NULL)); 6339566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreSubMatrix_C",NULL)); 634f8103e6bSStefano Zampini 635f8103e6bSStefano Zampini PetscCall(PetscObjectCompose((PetscObject)mat,"DiagonalBlock",NULL)); 6363a40ed3dSBarry Smith PetscFunctionReturn(0); 6378965ea79SLois Curfman McInnes } 63839ddd567SLois Curfman McInnes 63952c5f739Sprj- PETSC_INTERN PetscErrorCode MatView_SeqDense(Mat,PetscViewer); 64052c5f739Sprj- 6419804daf3SBarry Smith #include <petscdraw.h> 6426849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 6438965ea79SLois Curfman McInnes { 64439ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 645616b8fbbSStefano Zampini PetscMPIInt rank; 64619fd82e9SBarry Smith PetscViewerType vtype; 647ace3abfcSBarry Smith PetscBool iascii,isdraw; 648b0a32e0cSBarry Smith PetscViewer sviewer; 649f3ef73ceSBarry Smith PetscViewerFormat format; 6508965ea79SLois Curfman McInnes 6513a40ed3dSBarry Smith PetscFunctionBegin; 6529566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank)); 6539566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii)); 6549566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw)); 65532077d6dSBarry Smith if (iascii) { 6569566063dSJacob Faibussowitsch PetscCall(PetscViewerGetType(viewer,&vtype)); 6579566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer,&format)); 658456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 6594e220ebcSLois Curfman McInnes MatInfo info; 6609566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat,MAT_LOCAL,&info)); 6619566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 6629566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer," [%d] local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %" PetscInt_FMT " \n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory)); 6639566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 6649566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 6656f08ad05SPierre Jolivet if (mdn->Mvctx) PetscCall(PetscSFView(mdn->Mvctx,viewer)); 6663a40ed3dSBarry Smith PetscFunctionReturn(0); 667fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 6683a40ed3dSBarry Smith PetscFunctionReturn(0); 6698965ea79SLois Curfman McInnes } 670f1af5d2fSBarry Smith } else if (isdraw) { 671b0a32e0cSBarry Smith PetscDraw draw; 672ace3abfcSBarry Smith PetscBool isnull; 673f1af5d2fSBarry Smith 6749566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer,0,&draw)); 6759566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw,&isnull)); 676f1af5d2fSBarry Smith if (isnull) PetscFunctionReturn(0); 677f1af5d2fSBarry Smith } 67877ed5343SBarry Smith 6797da1fb6eSBarry Smith { 6808965ea79SLois Curfman McInnes /* assemble the entire matrix onto first processor. */ 6818965ea79SLois Curfman McInnes Mat A; 682d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,m,row,i,nz; 683ba8c8a56SBarry Smith PetscInt *cols; 684ba8c8a56SBarry Smith PetscScalar *vals; 6858965ea79SLois Curfman McInnes 6869566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat),&A)); 687dd400576SPatrick Sanan if (rank == 0) { 6889566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A,M,N,M,N)); 6893a40ed3dSBarry Smith } else { 6909566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A,0,0,M,N)); 6918965ea79SLois Curfman McInnes } 6927adad957SLisandro Dalcin /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */ 6939566063dSJacob Faibussowitsch PetscCall(MatSetType(A,MATMPIDENSE)); 6949566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(A,NULL)); 6959566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)A)); 6968965ea79SLois Curfman McInnes 69739ddd567SLois Curfman McInnes /* Copy the matrix ... This isn't the most efficient means, 69839ddd567SLois Curfman McInnes but it's quick for now */ 69951022da4SBarry Smith A->insertmode = INSERT_VALUES; 7002205254eSKarl Rupp 7012205254eSKarl Rupp row = mat->rmap->rstart; 7022205254eSKarl Rupp m = mdn->A->rmap->n; 7038965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 7049566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIDense(mat,row,&nz,&cols,&vals)); 7059566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIDense(A,1,&row,nz,cols,vals,INSERT_VALUES)); 7069566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIDense(mat,row,&nz,&cols,&vals)); 70739ddd567SLois Curfman McInnes row++; 7088965ea79SLois Curfman McInnes } 7098965ea79SLois Curfman McInnes 7109566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY)); 7119566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY)); 7129566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer)); 713dd400576SPatrick Sanan if (rank == 0) { 7149566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)((Mat_MPIDense*)(A->data))->A,((PetscObject)mat)->name)); 7159566063dSJacob Faibussowitsch PetscCall(MatView_SeqDense(((Mat_MPIDense*)(A->data))->A,sviewer)); 7168965ea79SLois Curfman McInnes } 7179566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer)); 7189566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 7199566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 7208965ea79SLois Curfman McInnes } 7213a40ed3dSBarry Smith PetscFunctionReturn(0); 7228965ea79SLois Curfman McInnes } 7238965ea79SLois Curfman McInnes 724dfbe8321SBarry Smith PetscErrorCode MatView_MPIDense(Mat mat,PetscViewer viewer) 7258965ea79SLois Curfman McInnes { 726ace3abfcSBarry Smith PetscBool iascii,isbinary,isdraw,issocket; 7278965ea79SLois Curfman McInnes 728433994e6SBarry Smith PetscFunctionBegin; 7299566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii)); 7309566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary)); 7319566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket)); 7329566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw)); 7330f5bd95cSBarry Smith 73432077d6dSBarry Smith if (iascii || issocket || isdraw) { 7359566063dSJacob Faibussowitsch PetscCall(MatView_MPIDense_ASCIIorDraworSocket(mat,viewer)); 736*1baa6e33SBarry Smith } else if (isbinary) PetscCall(MatView_Dense_Binary(mat,viewer)); 7373a40ed3dSBarry Smith PetscFunctionReturn(0); 7388965ea79SLois Curfman McInnes } 7398965ea79SLois Curfman McInnes 740dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info) 7418965ea79SLois Curfman McInnes { 7423501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 7433501a2bdSLois Curfman McInnes Mat mdn = mat->A; 7443966268fSBarry Smith PetscLogDouble isend[5],irecv[5]; 7458965ea79SLois Curfman McInnes 7463a40ed3dSBarry Smith PetscFunctionBegin; 7474e220ebcSLois Curfman McInnes info->block_size = 1.0; 7482205254eSKarl Rupp 7499566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mdn,MAT_LOCAL,info)); 7502205254eSKarl Rupp 7514e220ebcSLois Curfman McInnes isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 7524e220ebcSLois Curfman McInnes isend[3] = info->memory; isend[4] = info->mallocs; 7538965ea79SLois Curfman McInnes if (flag == MAT_LOCAL) { 7544e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 7554e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 7564e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 7574e220ebcSLois Curfman McInnes info->memory = isend[3]; 7584e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 7598965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 7601c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_MAX,PetscObjectComm((PetscObject)A))); 7612205254eSKarl Rupp 7624e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7634e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7644e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7654e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7664e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7678965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 7681c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_SUM,PetscObjectComm((PetscObject)A))); 7692205254eSKarl Rupp 7704e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7714e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7724e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7734e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7744e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7758965ea79SLois Curfman McInnes } 7764e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 7774e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 7784e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 7793a40ed3dSBarry Smith PetscFunctionReturn(0); 7808965ea79SLois Curfman McInnes } 7818965ea79SLois Curfman McInnes 782ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIDense(Mat A,MatOption op,PetscBool flg) 7838965ea79SLois Curfman McInnes { 78439ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 7858965ea79SLois Curfman McInnes 7863a40ed3dSBarry Smith PetscFunctionBegin; 78712c028f9SKris Buschelman switch (op) { 788512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 78912c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 79012c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 79143674050SBarry Smith MatCheckPreallocated(A,1); 7929566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A,op,flg)); 79312c028f9SKris Buschelman break; 79412c028f9SKris Buschelman case MAT_ROW_ORIENTED: 79543674050SBarry Smith MatCheckPreallocated(A,1); 7964e0d8c25SBarry Smith a->roworiented = flg; 7979566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A,op,flg)); 79812c028f9SKris Buschelman break; 7998c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 80013fa8e87SLisandro Dalcin case MAT_KEEP_NONZERO_PATTERN: 80112c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 802071fcb05SBarry Smith case MAT_SORTED_FULL: 8039566063dSJacob Faibussowitsch PetscCall(PetscInfo(A,"Option %s ignored\n",MatOptions[op])); 80412c028f9SKris Buschelman break; 80512c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 8064e0d8c25SBarry Smith a->donotstash = flg; 80712c028f9SKris Buschelman break; 80877e54ba9SKris Buschelman case MAT_SYMMETRIC: 80977e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 8109a4540c5SBarry Smith case MAT_HERMITIAN: 8119a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 812600fe468SBarry Smith case MAT_IGNORE_LOWER_TRIANGULAR: 8135d7aebe8SStefano Zampini case MAT_IGNORE_ZERO_ENTRIES: 8149566063dSJacob Faibussowitsch PetscCall(PetscInfo(A,"Option %s ignored\n",MatOptions[op])); 81577e54ba9SKris Buschelman break; 81612c028f9SKris Buschelman default: 81798921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %s",MatOptions[op]); 8183a40ed3dSBarry Smith } 8193a40ed3dSBarry Smith PetscFunctionReturn(0); 8208965ea79SLois Curfman McInnes } 8218965ea79SLois Curfman McInnes 822dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIDense(Mat A,Vec ll,Vec rr) 8235b2fa520SLois Curfman McInnes { 8245b2fa520SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 825637a0070SStefano Zampini const PetscScalar *l; 826637a0070SStefano Zampini PetscScalar x,*v,*vv,*r; 827637a0070SStefano Zampini PetscInt i,j,s2a,s3a,s2,s3,m=mdn->A->rmap->n,n=mdn->A->cmap->n,lda; 8285b2fa520SLois Curfman McInnes 8295b2fa520SLois Curfman McInnes PetscFunctionBegin; 8309566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(mdn->A,&vv)); 8319566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(mdn->A,&lda)); 8329566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A,&s2,&s3)); 8335b2fa520SLois Curfman McInnes if (ll) { 8349566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll,&s2a)); 83508401ef6SPierre Jolivet PetscCheck(s2a == s2,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vector non-conforming local size, %" PetscInt_FMT " != %" PetscInt_FMT, s2a, s2); 8369566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(ll,&l)); 8375b2fa520SLois Curfman McInnes for (i=0; i<m; i++) { 8385b2fa520SLois Curfman McInnes x = l[i]; 839637a0070SStefano Zampini v = vv + i; 840637a0070SStefano Zampini for (j=0; j<n; j++) { (*v) *= x; v+= lda;} 8415b2fa520SLois Curfman McInnes } 8429566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(ll,&l)); 8439566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(1.0*n*m)); 8445b2fa520SLois Curfman McInnes } 8455b2fa520SLois Curfman McInnes if (rr) { 846637a0070SStefano Zampini const PetscScalar *ar; 847637a0070SStefano Zampini 8489566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr,&s3a)); 84908401ef6SPierre Jolivet PetscCheck(s3a == s3,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vec non-conforming local size, %" PetscInt_FMT " != %" PetscInt_FMT ".", s3a, s3); 8509566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(rr,&ar)); 8516f08ad05SPierre Jolivet if (!mdn->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); 8529566063dSJacob Faibussowitsch PetscCall(VecGetArray(mdn->lvec,&r)); 8539566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(mdn->Mvctx,MPIU_SCALAR,ar,r,MPI_REPLACE)); 8549566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ar,r,MPI_REPLACE)); 8559566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(rr,&ar)); 8565b2fa520SLois Curfman McInnes for (i=0; i<n; i++) { 8575b2fa520SLois Curfman McInnes x = r[i]; 858637a0070SStefano Zampini v = vv + i*lda; 8592205254eSKarl Rupp for (j=0; j<m; j++) (*v++) *= x; 8605b2fa520SLois Curfman McInnes } 8619566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mdn->lvec,&r)); 8629566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(1.0*n*m)); 8635b2fa520SLois Curfman McInnes } 8649566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(mdn->A,&vv)); 8655b2fa520SLois Curfman McInnes PetscFunctionReturn(0); 8665b2fa520SLois Curfman McInnes } 8675b2fa520SLois Curfman McInnes 868dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIDense(Mat A,NormType type,PetscReal *nrm) 869096963f5SLois Curfman McInnes { 8703501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 87113f74950SBarry Smith PetscInt i,j; 872616b8fbbSStefano Zampini PetscMPIInt size; 873329f5518SBarry Smith PetscReal sum = 0.0; 874637a0070SStefano Zampini const PetscScalar *av,*v; 8753501a2bdSLois Curfman McInnes 8763a40ed3dSBarry Smith PetscFunctionBegin; 8779566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(mdn->A,&av)); 878637a0070SStefano Zampini v = av; 8799566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A),&size)); 880616b8fbbSStefano Zampini if (size == 1) { 8819566063dSJacob Faibussowitsch PetscCall(MatNorm(mdn->A,type,nrm)); 8823501a2bdSLois Curfman McInnes } else { 8833501a2bdSLois Curfman McInnes if (type == NORM_FROBENIUS) { 884d0f46423SBarry Smith for (i=0; i<mdn->A->cmap->n*mdn->A->rmap->n; i++) { 885329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 8863501a2bdSLois Curfman McInnes } 8871c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A))); 8888f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 8899566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0*mdn->A->cmap->n*mdn->A->rmap->n)); 8903a40ed3dSBarry Smith } else if (type == NORM_1) { 891329f5518SBarry Smith PetscReal *tmp,*tmp2; 8929566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(A->cmap->N,&tmp,A->cmap->N,&tmp2)); 893064f8208SBarry Smith *nrm = 0.0; 894637a0070SStefano Zampini v = av; 895d0f46423SBarry Smith for (j=0; j<mdn->A->cmap->n; j++) { 896d0f46423SBarry Smith for (i=0; i<mdn->A->rmap->n; i++) { 89767e560aaSBarry Smith tmp[j] += PetscAbsScalar(*v); v++; 8983501a2bdSLois Curfman McInnes } 8993501a2bdSLois Curfman McInnes } 9001c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(tmp,tmp2,A->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A))); 901d0f46423SBarry Smith for (j=0; j<A->cmap->N; j++) { 902064f8208SBarry Smith if (tmp2[j] > *nrm) *nrm = tmp2[j]; 9033501a2bdSLois Curfman McInnes } 9049566063dSJacob Faibussowitsch PetscCall(PetscFree2(tmp,tmp2)); 9059566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(A->cmap->n*A->rmap->n)); 9063a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 907329f5518SBarry Smith PetscReal ntemp; 9089566063dSJacob Faibussowitsch PetscCall(MatNorm(mdn->A,type,&ntemp)); 9091c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&ntemp,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A))); 910ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"No support for two norm"); 9113501a2bdSLois Curfman McInnes } 9129566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(mdn->A,&av)); 9133a40ed3dSBarry Smith PetscFunctionReturn(0); 9143501a2bdSLois Curfman McInnes } 9153501a2bdSLois Curfman McInnes 916fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIDense(Mat A,MatReuse reuse,Mat *matout) 9173501a2bdSLois Curfman McInnes { 9183501a2bdSLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 9193501a2bdSLois Curfman McInnes Mat B; 920d0f46423SBarry Smith PetscInt M = A->rmap->N,N = A->cmap->N,m,n,*rwork,rstart = A->rmap->rstart; 921637a0070SStefano Zampini PetscInt j,i,lda; 92287828ca2SBarry Smith PetscScalar *v; 9233501a2bdSLois Curfman McInnes 9243a40ed3dSBarry Smith PetscFunctionBegin; 925cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 9269566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&B)); 9279566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B,A->cmap->n,A->rmap->n,N,M)); 9289566063dSJacob Faibussowitsch PetscCall(MatSetType(B,((PetscObject)A)->type_name)); 9299566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(B,NULL)); 930637a0070SStefano Zampini } else B = *matout; 9313501a2bdSLois Curfman McInnes 932637a0070SStefano Zampini m = a->A->rmap->n; n = a->A->cmap->n; 9339566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A,(const PetscScalar**)&v)); 9349566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 9359566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m,&rwork)); 9363501a2bdSLois Curfman McInnes for (i=0; i<m; i++) rwork[i] = rstart + i; 9371acff37aSSatish Balay for (j=0; j<n; j++) { 9389566063dSJacob Faibussowitsch PetscCall(MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES)); 939637a0070SStefano Zampini v += lda; 9403501a2bdSLois Curfman McInnes } 9419566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A,(const PetscScalar**)&v)); 9429566063dSJacob Faibussowitsch PetscCall(PetscFree(rwork)); 9439566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY)); 9449566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY)); 945cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) { 9463501a2bdSLois Curfman McInnes *matout = B; 9473501a2bdSLois Curfman McInnes } else { 9489566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(A,&B)); 9493501a2bdSLois Curfman McInnes } 9503a40ed3dSBarry Smith PetscFunctionReturn(0); 951096963f5SLois Curfman McInnes } 952096963f5SLois Curfman McInnes 9536849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat*); 95452c5f739Sprj- PETSC_INTERN PetscErrorCode MatScale_MPIDense(Mat,PetscScalar); 9558965ea79SLois Curfman McInnes 9564994cf47SJed Brown PetscErrorCode MatSetUp_MPIDense(Mat A) 957273d9f13SBarry Smith { 958273d9f13SBarry Smith PetscFunctionBegin; 9599566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->rmap)); 9609566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->cmap)); 96118992e5dSStefano Zampini if (!A->preallocated) { 9629566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(A,NULL)); 96318992e5dSStefano Zampini } 964273d9f13SBarry Smith PetscFunctionReturn(0); 965273d9f13SBarry Smith } 966273d9f13SBarry Smith 967488007eeSBarry Smith PetscErrorCode MatAXPY_MPIDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str) 968488007eeSBarry Smith { 969488007eeSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)Y->data, *B = (Mat_MPIDense*)X->data; 970488007eeSBarry Smith 971488007eeSBarry Smith PetscFunctionBegin; 9729566063dSJacob Faibussowitsch PetscCall(MatAXPY(A->A,alpha,B->A,str)); 973488007eeSBarry Smith PetscFunctionReturn(0); 974488007eeSBarry Smith } 975488007eeSBarry Smith 9767087cfbeSBarry Smith PetscErrorCode MatConjugate_MPIDense(Mat mat) 977ba337c44SJed Brown { 978ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)mat->data; 979ba337c44SJed Brown 980ba337c44SJed Brown PetscFunctionBegin; 9819566063dSJacob Faibussowitsch PetscCall(MatConjugate(a->A)); 982ba337c44SJed Brown PetscFunctionReturn(0); 983ba337c44SJed Brown } 984ba337c44SJed Brown 985ba337c44SJed Brown PetscErrorCode MatRealPart_MPIDense(Mat A) 986ba337c44SJed Brown { 987ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 988ba337c44SJed Brown 989ba337c44SJed Brown PetscFunctionBegin; 9909566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 991ba337c44SJed Brown PetscFunctionReturn(0); 992ba337c44SJed Brown } 993ba337c44SJed Brown 994ba337c44SJed Brown PetscErrorCode MatImaginaryPart_MPIDense(Mat A) 995ba337c44SJed Brown { 996ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 997ba337c44SJed Brown 998ba337c44SJed Brown PetscFunctionBegin; 9999566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 1000ba337c44SJed Brown PetscFunctionReturn(0); 1001ba337c44SJed Brown } 1002ba337c44SJed Brown 100349a6ff4bSBarry Smith static PetscErrorCode MatGetColumnVector_MPIDense(Mat A,Vec v,PetscInt col) 100449a6ff4bSBarry Smith { 1005637a0070SStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*) A->data; 100649a6ff4bSBarry Smith 100749a6ff4bSBarry Smith PetscFunctionBegin; 100828b400f6SJacob Faibussowitsch PetscCheck(a->A,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Missing local matrix"); 100928b400f6SJacob Faibussowitsch PetscCheck(a->A->ops->getcolumnvector,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Missing get column operation"); 10109566063dSJacob Faibussowitsch PetscCall((*a->A->ops->getcolumnvector)(a->A,v,col)); 101149a6ff4bSBarry Smith PetscFunctionReturn(0); 101249a6ff4bSBarry Smith } 101349a6ff4bSBarry Smith 1014857cbf51SRichard Tran Mills PETSC_INTERN PetscErrorCode MatGetColumnReductions_SeqDense(Mat,PetscInt,PetscReal*); 101552c5f739Sprj- 1016857cbf51SRichard Tran Mills PetscErrorCode MatGetColumnReductions_MPIDense(Mat A,PetscInt type,PetscReal *reductions) 10170716a85fSBarry Smith { 1018a873a8cdSSam Reynolds PetscInt i,m,n; 10190716a85fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*) A->data; 10200716a85fSBarry Smith PetscReal *work; 10210716a85fSBarry Smith 10220716a85fSBarry Smith PetscFunctionBegin; 10239566063dSJacob Faibussowitsch PetscCall(MatGetSize(A,&m,&n)); 10249566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n,&work)); 1025857cbf51SRichard Tran Mills if (type == REDUCTION_MEAN_REALPART) { 10269566063dSJacob Faibussowitsch PetscCall(MatGetColumnReductions_SeqDense(a->A,(PetscInt)REDUCTION_SUM_REALPART,work)); 1027857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_IMAGINARYPART) { 10289566063dSJacob Faibussowitsch PetscCall(MatGetColumnReductions_SeqDense(a->A,(PetscInt)REDUCTION_SUM_IMAGINARYPART,work)); 1029a873a8cdSSam Reynolds } else { 10309566063dSJacob Faibussowitsch PetscCall(MatGetColumnReductions_SeqDense(a->A,type,work)); 1031a873a8cdSSam Reynolds } 1032857cbf51SRichard Tran Mills if (type == NORM_2) { 10330716a85fSBarry Smith for (i=0; i<n; i++) work[i] *= work[i]; 10340716a85fSBarry Smith } 1035857cbf51SRichard Tran Mills if (type == NORM_INFINITY) { 10361c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work,reductions,n,MPIU_REAL,MPIU_MAX,A->hdr.comm)); 10370716a85fSBarry Smith } else { 10381c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work,reductions,n,MPIU_REAL,MPIU_SUM,A->hdr.comm)); 10390716a85fSBarry Smith } 10409566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 1041857cbf51SRichard Tran Mills if (type == NORM_2) { 1042a873a8cdSSam Reynolds for (i=0; i<n; i++) reductions[i] = PetscSqrtReal(reductions[i]); 1043857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 1044a873a8cdSSam Reynolds for (i=0; i<n; i++) reductions[i] /= m; 10450716a85fSBarry Smith } 10460716a85fSBarry Smith PetscFunctionReturn(0); 10470716a85fSBarry Smith } 10480716a85fSBarry Smith 1049637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1050126e4e93SJose E. Roman PetscErrorCode MatShift_MPIDenseCUDA(Mat A,PetscScalar alpha) 1051126e4e93SJose E. Roman { 1052126e4e93SJose E. Roman PetscScalar *da; 1053126e4e93SJose E. Roman PetscInt lda; 1054126e4e93SJose E. Roman 1055126e4e93SJose E. Roman PetscFunctionBegin; 1056126e4e93SJose E. Roman PetscCall(MatDenseCUDAGetArray(A,&da)); 1057126e4e93SJose E. Roman PetscCall(MatDenseGetLDA(A,&lda)); 1058126e4e93SJose E. Roman PetscCall(PetscInfo(A,"Performing Shift on backend\n")); 1059126e4e93SJose E. Roman PetscCall(MatShift_DenseCUDA_Private(da,alpha,lda,A->rmap->rstart,A->rmap->rend,A->cmap->N)); 1060126e4e93SJose E. Roman PetscCall(MatDenseCUDARestoreArray(A,&da)); 1061126e4e93SJose E. Roman PetscFunctionReturn(0); 1062126e4e93SJose E. Roman } 1063126e4e93SJose E. Roman 10646947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVec_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10656947451fSStefano Zampini { 10666947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10676947451fSStefano Zampini PetscInt lda; 10686947451fSStefano Zampini 10696947451fSStefano Zampini PetscFunctionBegin; 107028b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 107128b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 10726947451fSStefano Zampini if (!a->cvec) { 10739566063dSJacob Faibussowitsch PetscCall(VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 10749566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec)); 10756947451fSStefano Zampini } 10766947451fSStefano Zampini a->vecinuse = col + 1; 10779566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 10789566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArray(a->A,(PetscScalar**)&a->ptrinuse)); 10799566063dSJacob Faibussowitsch PetscCall(VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 10806947451fSStefano Zampini *v = a->cvec; 10816947451fSStefano Zampini PetscFunctionReturn(0); 10826947451fSStefano Zampini } 10836947451fSStefano Zampini 10846947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVec_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10856947451fSStefano Zampini { 10866947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10876947451fSStefano Zampini 10886947451fSStefano Zampini PetscFunctionBegin; 108928b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 109028b400f6SJacob Faibussowitsch PetscCheck(a->cvec,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector"); 10916947451fSStefano Zampini a->vecinuse = 0; 10929566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArray(a->A,(PetscScalar**)&a->ptrinuse)); 10939566063dSJacob Faibussowitsch PetscCall(VecCUDAResetArray(a->cvec)); 10946947451fSStefano Zampini *v = NULL; 10956947451fSStefano Zampini PetscFunctionReturn(0); 10966947451fSStefano Zampini } 10976947451fSStefano Zampini 10986947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecRead_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10996947451fSStefano Zampini { 11006947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 11016947451fSStefano Zampini PetscInt lda; 11026947451fSStefano Zampini 11036947451fSStefano Zampini PetscFunctionBegin; 110428b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 110528b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 11066947451fSStefano Zampini if (!a->cvec) { 11079566063dSJacob Faibussowitsch PetscCall(VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 11089566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec)); 11096947451fSStefano Zampini } 11106947451fSStefano Zampini a->vecinuse = col + 1; 11119566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 11129566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArrayRead(a->A,&a->ptrinuse)); 11139566063dSJacob Faibussowitsch PetscCall(VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 11149566063dSJacob Faibussowitsch PetscCall(VecLockReadPush(a->cvec)); 11156947451fSStefano Zampini *v = a->cvec; 11166947451fSStefano Zampini PetscFunctionReturn(0); 11176947451fSStefano Zampini } 11186947451fSStefano Zampini 11196947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecRead_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 11206947451fSStefano Zampini { 11216947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 11226947451fSStefano Zampini 11236947451fSStefano Zampini PetscFunctionBegin; 112428b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 112528b400f6SJacob Faibussowitsch PetscCheck(a->cvec,PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 11266947451fSStefano Zampini a->vecinuse = 0; 11279566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArrayRead(a->A,&a->ptrinuse)); 11289566063dSJacob Faibussowitsch PetscCall(VecLockReadPop(a->cvec)); 11299566063dSJacob Faibussowitsch PetscCall(VecCUDAResetArray(a->cvec)); 11306947451fSStefano Zampini *v = NULL; 11316947451fSStefano Zampini PetscFunctionReturn(0); 11326947451fSStefano Zampini } 11336947451fSStefano Zampini 11346947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecWrite_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 11356947451fSStefano Zampini { 11366947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 11376947451fSStefano Zampini PetscInt lda; 11386947451fSStefano Zampini 11396947451fSStefano Zampini PetscFunctionBegin; 114028b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 114128b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 11426947451fSStefano Zampini if (!a->cvec) { 11439566063dSJacob Faibussowitsch PetscCall(VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 11449566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec)); 11456947451fSStefano Zampini } 11466947451fSStefano Zampini a->vecinuse = col + 1; 11479566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 11489566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArrayWrite(a->A,(PetscScalar**)&a->ptrinuse)); 11499566063dSJacob Faibussowitsch PetscCall(VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 11506947451fSStefano Zampini *v = a->cvec; 11516947451fSStefano Zampini PetscFunctionReturn(0); 11526947451fSStefano Zampini } 11536947451fSStefano Zampini 11546947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 11556947451fSStefano Zampini { 11566947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 11576947451fSStefano Zampini 11586947451fSStefano Zampini PetscFunctionBegin; 115928b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 116028b400f6SJacob Faibussowitsch PetscCheck(a->cvec,PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 11616947451fSStefano Zampini a->vecinuse = 0; 11629566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArrayWrite(a->A,(PetscScalar**)&a->ptrinuse)); 11639566063dSJacob Faibussowitsch PetscCall(VecCUDAResetArray(a->cvec)); 11646947451fSStefano Zampini *v = NULL; 11656947451fSStefano Zampini PetscFunctionReturn(0); 11666947451fSStefano Zampini } 11676947451fSStefano Zampini 1168637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAPlaceArray_MPIDenseCUDA(Mat A, const PetscScalar *a) 1169637a0070SStefano Zampini { 1170637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1171637a0070SStefano Zampini 1172637a0070SStefano Zampini PetscFunctionBegin; 117328b400f6SJacob Faibussowitsch PetscCheck(!l->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 117428b400f6SJacob Faibussowitsch PetscCheck(!l->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 11759566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAPlaceArray(l->A,a)); 1176637a0070SStefano Zampini PetscFunctionReturn(0); 1177637a0070SStefano Zampini } 1178637a0070SStefano Zampini 1179637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAResetArray_MPIDenseCUDA(Mat A) 1180637a0070SStefano Zampini { 1181637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1182637a0070SStefano Zampini 1183637a0070SStefano Zampini PetscFunctionBegin; 118428b400f6SJacob Faibussowitsch PetscCheck(!l->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 118528b400f6SJacob Faibussowitsch PetscCheck(!l->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 11869566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAResetArray(l->A)); 1187637a0070SStefano Zampini PetscFunctionReturn(0); 1188637a0070SStefano Zampini } 1189637a0070SStefano Zampini 1190d5ea218eSStefano Zampini static PetscErrorCode MatDenseCUDAReplaceArray_MPIDenseCUDA(Mat A, const PetscScalar *a) 1191d5ea218eSStefano Zampini { 1192d5ea218eSStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1193d5ea218eSStefano Zampini 1194d5ea218eSStefano Zampini PetscFunctionBegin; 119528b400f6SJacob Faibussowitsch PetscCheck(!l->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 119628b400f6SJacob Faibussowitsch PetscCheck(!l->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 11979566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAReplaceArray(l->A,a)); 1198d5ea218eSStefano Zampini PetscFunctionReturn(0); 1199d5ea218eSStefano Zampini } 1200d5ea218eSStefano Zampini 1201637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArrayWrite_MPIDenseCUDA(Mat A, PetscScalar **a) 1202637a0070SStefano Zampini { 1203637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1204637a0070SStefano Zampini 1205637a0070SStefano Zampini PetscFunctionBegin; 12069566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArrayWrite(l->A,a)); 1207637a0070SStefano Zampini PetscFunctionReturn(0); 1208637a0070SStefano Zampini } 1209637a0070SStefano Zampini 1210637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArrayWrite_MPIDenseCUDA(Mat A, PetscScalar **a) 1211637a0070SStefano Zampini { 1212637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1213637a0070SStefano Zampini 1214637a0070SStefano Zampini PetscFunctionBegin; 12159566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArrayWrite(l->A,a)); 1216637a0070SStefano Zampini PetscFunctionReturn(0); 1217637a0070SStefano Zampini } 1218637a0070SStefano Zampini 1219637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArrayRead_MPIDenseCUDA(Mat A, const PetscScalar **a) 1220637a0070SStefano Zampini { 1221637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1222637a0070SStefano Zampini 1223637a0070SStefano Zampini PetscFunctionBegin; 12249566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArrayRead(l->A,a)); 1225637a0070SStefano Zampini PetscFunctionReturn(0); 1226637a0070SStefano Zampini } 1227637a0070SStefano Zampini 1228637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArrayRead_MPIDenseCUDA(Mat A, const PetscScalar **a) 1229637a0070SStefano Zampini { 1230637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1231637a0070SStefano Zampini 1232637a0070SStefano Zampini PetscFunctionBegin; 12339566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArrayRead(l->A,a)); 1234637a0070SStefano Zampini PetscFunctionReturn(0); 1235637a0070SStefano Zampini } 1236637a0070SStefano Zampini 1237637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArray_MPIDenseCUDA(Mat A, PetscScalar **a) 1238637a0070SStefano Zampini { 1239637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1240637a0070SStefano Zampini 1241637a0070SStefano Zampini PetscFunctionBegin; 12429566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArray(l->A,a)); 1243637a0070SStefano Zampini PetscFunctionReturn(0); 1244637a0070SStefano Zampini } 1245637a0070SStefano Zampini 1246637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArray_MPIDenseCUDA(Mat A, PetscScalar **a) 1247637a0070SStefano Zampini { 1248637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1249637a0070SStefano Zampini 1250637a0070SStefano Zampini PetscFunctionBegin; 12519566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArray(l->A,a)); 1252637a0070SStefano Zampini PetscFunctionReturn(0); 1253637a0070SStefano Zampini } 1254637a0070SStefano Zampini 12556947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecWrite_MPIDense(Mat,PetscInt,Vec*); 12566947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecRead_MPIDense(Mat,PetscInt,Vec*); 12576947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVec_MPIDense(Mat,PetscInt,Vec*); 12586947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDense(Mat,PetscInt,Vec*); 12596947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecRead_MPIDense(Mat,PetscInt,Vec*); 12606947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVec_MPIDense(Mat,PetscInt,Vec*); 12615ea7661aSPierre Jolivet static PetscErrorCode MatDenseRestoreSubMatrix_MPIDense(Mat,Mat*); 12626947451fSStefano Zampini 1263637a0070SStefano Zampini static PetscErrorCode MatBindToCPU_MPIDenseCUDA(Mat mat,PetscBool bind) 1264637a0070SStefano Zampini { 1265637a0070SStefano Zampini Mat_MPIDense *d = (Mat_MPIDense*)mat->data; 1266637a0070SStefano Zampini 1267637a0070SStefano Zampini PetscFunctionBegin; 126828b400f6SJacob Faibussowitsch PetscCheck(!d->vecinuse,PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 126928b400f6SJacob Faibussowitsch PetscCheck(!d->matinuse,PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1270*1baa6e33SBarry Smith if (d->A) PetscCall(MatBindToCPU(d->A,bind)); 1271637a0070SStefano Zampini mat->boundtocpu = bind; 12726947451fSStefano Zampini if (!bind) { 12736947451fSStefano Zampini PetscBool iscuda; 12746947451fSStefano Zampini 12759566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)d->cvec,VECMPICUDA,&iscuda)); 12766947451fSStefano Zampini if (!iscuda) { 12779566063dSJacob Faibussowitsch PetscCall(VecDestroy(&d->cvec)); 1278616b8fbbSStefano Zampini } 12799566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)d->cmat,MATMPIDENSECUDA,&iscuda)); 1280616b8fbbSStefano Zampini if (!iscuda) { 12819566063dSJacob Faibussowitsch PetscCall(MatDestroy(&d->cmat)); 12826947451fSStefano Zampini } 12839566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDenseCUDA)); 12849566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDenseCUDA)); 12859566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDenseCUDA)); 12869566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDenseCUDA)); 12879566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDenseCUDA)); 12889566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDenseCUDA)); 1289126e4e93SJose E. Roman mat->ops->shift = MatShift_MPIDenseCUDA; 12906947451fSStefano Zampini } else { 12919566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDense)); 12929566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDense)); 12939566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDense)); 12949566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDense)); 12959566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDense)); 12969566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDense)); 1297126e4e93SJose E. Roman mat->ops->shift = MatShift_MPIDense; 1298616b8fbbSStefano Zampini } 1299*1baa6e33SBarry Smith if (d->cmat) PetscCall(MatBindToCPU(d->cmat,bind)); 1300637a0070SStefano Zampini PetscFunctionReturn(0); 1301637a0070SStefano Zampini } 1302637a0070SStefano Zampini 1303637a0070SStefano Zampini PetscErrorCode MatMPIDenseCUDASetPreallocation(Mat A, PetscScalar *d_data) 1304637a0070SStefano Zampini { 1305637a0070SStefano Zampini Mat_MPIDense *d = (Mat_MPIDense*)A->data; 1306637a0070SStefano Zampini PetscBool iscuda; 1307637a0070SStefano Zampini 1308637a0070SStefano Zampini PetscFunctionBegin; 1309d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 13109566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A,MATMPIDENSECUDA,&iscuda)); 1311637a0070SStefano Zampini if (!iscuda) PetscFunctionReturn(0); 13129566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->rmap)); 13139566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->cmap)); 1314637a0070SStefano Zampini if (!d->A) { 13159566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF,&d->A)); 13169566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)d->A)); 13179566063dSJacob Faibussowitsch PetscCall(MatSetSizes(d->A,A->rmap->n,A->cmap->N,A->rmap->n,A->cmap->N)); 1318637a0070SStefano Zampini } 13199566063dSJacob Faibussowitsch PetscCall(MatSetType(d->A,MATSEQDENSECUDA)); 13209566063dSJacob Faibussowitsch PetscCall(MatSeqDenseCUDASetPreallocation(d->A,d_data)); 1321637a0070SStefano Zampini A->preallocated = PETSC_TRUE; 13226f08ad05SPierre Jolivet A->assembled = PETSC_TRUE; 1323637a0070SStefano Zampini PetscFunctionReturn(0); 1324637a0070SStefano Zampini } 1325637a0070SStefano Zampini #endif 1326637a0070SStefano Zampini 132773a71a0fSBarry Smith static PetscErrorCode MatSetRandom_MPIDense(Mat x,PetscRandom rctx) 132873a71a0fSBarry Smith { 132973a71a0fSBarry Smith Mat_MPIDense *d = (Mat_MPIDense*)x->data; 133073a71a0fSBarry Smith 133173a71a0fSBarry Smith PetscFunctionBegin; 13329566063dSJacob Faibussowitsch PetscCall(MatSetRandom(d->A,rctx)); 133373a71a0fSBarry Smith PetscFunctionReturn(0); 133473a71a0fSBarry Smith } 133573a71a0fSBarry Smith 13363b49f96aSBarry Smith static PetscErrorCode MatMissingDiagonal_MPIDense(Mat A,PetscBool *missing,PetscInt *d) 13373b49f96aSBarry Smith { 13383b49f96aSBarry Smith PetscFunctionBegin; 13393b49f96aSBarry Smith *missing = PETSC_FALSE; 13403b49f96aSBarry Smith PetscFunctionReturn(0); 13413b49f96aSBarry Smith } 13423b49f96aSBarry Smith 13434222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat,Mat,PetscReal,Mat); 1344cc48ffa7SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat,Mat,Mat); 13456718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat,Mat,PetscReal,Mat); 1346a1f9a5e6SStefano Zampini static PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat,Mat,Mat); 13476718818eSStefano Zampini static PetscErrorCode MatEqual_MPIDense(Mat,Mat,PetscBool*); 13486718818eSStefano Zampini static PetscErrorCode MatLoad_MPIDense(Mat,PetscViewer); 1349cc48ffa7SToby Isaac 13508965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/ 135109dc0095SBarry Smith static struct _MatOps MatOps_Values = { MatSetValues_MPIDense, 135209dc0095SBarry Smith MatGetRow_MPIDense, 135309dc0095SBarry Smith MatRestoreRow_MPIDense, 135409dc0095SBarry Smith MatMult_MPIDense, 135597304618SKris Buschelman /* 4*/ MatMultAdd_MPIDense, 13567c922b88SBarry Smith MatMultTranspose_MPIDense, 13577c922b88SBarry Smith MatMultTransposeAdd_MPIDense, 1358f4259b30SLisandro Dalcin NULL, 1359f4259b30SLisandro Dalcin NULL, 1360f4259b30SLisandro Dalcin NULL, 1361f4259b30SLisandro Dalcin /* 10*/ NULL, 1362f4259b30SLisandro Dalcin NULL, 1363f4259b30SLisandro Dalcin NULL, 1364f4259b30SLisandro Dalcin NULL, 136509dc0095SBarry Smith MatTranspose_MPIDense, 136697304618SKris Buschelman /* 15*/ MatGetInfo_MPIDense, 13676e4ee0c6SHong Zhang MatEqual_MPIDense, 136809dc0095SBarry Smith MatGetDiagonal_MPIDense, 13695b2fa520SLois Curfman McInnes MatDiagonalScale_MPIDense, 137009dc0095SBarry Smith MatNorm_MPIDense, 137197304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPIDense, 137209dc0095SBarry Smith MatAssemblyEnd_MPIDense, 137309dc0095SBarry Smith MatSetOption_MPIDense, 137409dc0095SBarry Smith MatZeroEntries_MPIDense, 1375d519adbfSMatthew Knepley /* 24*/ MatZeroRows_MPIDense, 1376f4259b30SLisandro Dalcin NULL, 1377f4259b30SLisandro Dalcin NULL, 1378f4259b30SLisandro Dalcin NULL, 1379f4259b30SLisandro Dalcin NULL, 13804994cf47SJed Brown /* 29*/ MatSetUp_MPIDense, 1381f4259b30SLisandro Dalcin NULL, 1382f4259b30SLisandro Dalcin NULL, 1383c56a70eeSBarry Smith MatGetDiagonalBlock_MPIDense, 1384f4259b30SLisandro Dalcin NULL, 1385d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPIDense, 1386f4259b30SLisandro Dalcin NULL, 1387f4259b30SLisandro Dalcin NULL, 1388f4259b30SLisandro Dalcin NULL, 1389f4259b30SLisandro Dalcin NULL, 1390d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPIDense, 13917dae84e0SHong Zhang MatCreateSubMatrices_MPIDense, 1392f4259b30SLisandro Dalcin NULL, 139309dc0095SBarry Smith MatGetValues_MPIDense, 1394a76f77c3SStefano Zampini MatCopy_MPIDense, 1395f4259b30SLisandro Dalcin /* 44*/ NULL, 139609dc0095SBarry Smith MatScale_MPIDense, 13972f605a99SJose E. Roman MatShift_MPIDense, 1398f4259b30SLisandro Dalcin NULL, 1399f4259b30SLisandro Dalcin NULL, 140073a71a0fSBarry Smith /* 49*/ MatSetRandom_MPIDense, 1401f4259b30SLisandro Dalcin NULL, 1402f4259b30SLisandro Dalcin NULL, 1403f4259b30SLisandro Dalcin NULL, 1404f4259b30SLisandro Dalcin NULL, 1405f4259b30SLisandro Dalcin /* 54*/ NULL, 1406f4259b30SLisandro Dalcin NULL, 1407f4259b30SLisandro Dalcin NULL, 1408f4259b30SLisandro Dalcin NULL, 1409f4259b30SLisandro Dalcin NULL, 14107dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPIDense, 1411b9b97703SBarry Smith MatDestroy_MPIDense, 1412b9b97703SBarry Smith MatView_MPIDense, 1413f4259b30SLisandro Dalcin NULL, 1414f4259b30SLisandro Dalcin NULL, 1415f4259b30SLisandro Dalcin /* 64*/ NULL, 1416f4259b30SLisandro Dalcin NULL, 1417f4259b30SLisandro Dalcin NULL, 1418f4259b30SLisandro Dalcin NULL, 1419f4259b30SLisandro Dalcin NULL, 1420f4259b30SLisandro Dalcin /* 69*/ NULL, 1421f4259b30SLisandro Dalcin NULL, 1422f4259b30SLisandro Dalcin NULL, 1423f4259b30SLisandro Dalcin NULL, 1424f4259b30SLisandro Dalcin NULL, 1425f4259b30SLisandro Dalcin /* 74*/ NULL, 1426f4259b30SLisandro Dalcin NULL, 1427f4259b30SLisandro Dalcin NULL, 1428f4259b30SLisandro Dalcin NULL, 1429f4259b30SLisandro Dalcin NULL, 1430f4259b30SLisandro Dalcin /* 79*/ NULL, 1431f4259b30SLisandro Dalcin NULL, 1432f4259b30SLisandro Dalcin NULL, 1433f4259b30SLisandro Dalcin NULL, 14345bba2384SShri Abhyankar /* 83*/ MatLoad_MPIDense, 1435f4259b30SLisandro Dalcin NULL, 1436f4259b30SLisandro Dalcin NULL, 1437f4259b30SLisandro Dalcin NULL, 1438f4259b30SLisandro Dalcin NULL, 1439f4259b30SLisandro Dalcin NULL, 1440f4259b30SLisandro Dalcin /* 89*/ NULL, 1441f4259b30SLisandro Dalcin NULL, 1442f4259b30SLisandro Dalcin NULL, 1443f4259b30SLisandro Dalcin NULL, 1444f4259b30SLisandro Dalcin NULL, 1445f4259b30SLisandro Dalcin /* 94*/ NULL, 1446f4259b30SLisandro Dalcin NULL, 14476718818eSStefano Zampini MatMatTransposeMultSymbolic_MPIDense_MPIDense, 1448cc48ffa7SToby Isaac MatMatTransposeMultNumeric_MPIDense_MPIDense, 1449f4259b30SLisandro Dalcin NULL, 14504222ddf1SHong Zhang /* 99*/ MatProductSetFromOptions_MPIDense, 1451f4259b30SLisandro Dalcin NULL, 1452f4259b30SLisandro Dalcin NULL, 1453ba337c44SJed Brown MatConjugate_MPIDense, 1454f4259b30SLisandro Dalcin NULL, 1455f4259b30SLisandro Dalcin /*104*/ NULL, 1456ba337c44SJed Brown MatRealPart_MPIDense, 1457ba337c44SJed Brown MatImaginaryPart_MPIDense, 1458f4259b30SLisandro Dalcin NULL, 1459f4259b30SLisandro Dalcin NULL, 1460f4259b30SLisandro Dalcin /*109*/ NULL, 1461f4259b30SLisandro Dalcin NULL, 1462f4259b30SLisandro Dalcin NULL, 146349a6ff4bSBarry Smith MatGetColumnVector_MPIDense, 14643b49f96aSBarry Smith MatMissingDiagonal_MPIDense, 1465f4259b30SLisandro Dalcin /*114*/ NULL, 1466f4259b30SLisandro Dalcin NULL, 1467f4259b30SLisandro Dalcin NULL, 1468f4259b30SLisandro Dalcin NULL, 1469f4259b30SLisandro Dalcin NULL, 1470f4259b30SLisandro Dalcin /*119*/ NULL, 1471f4259b30SLisandro Dalcin NULL, 1472f4259b30SLisandro Dalcin NULL, 1473f4259b30SLisandro Dalcin NULL, 1474f4259b30SLisandro Dalcin NULL, 1475f4259b30SLisandro Dalcin /*124*/ NULL, 1476a873a8cdSSam Reynolds MatGetColumnReductions_MPIDense, 1477f4259b30SLisandro Dalcin NULL, 1478f4259b30SLisandro Dalcin NULL, 1479f4259b30SLisandro Dalcin NULL, 1480f4259b30SLisandro Dalcin /*129*/ NULL, 1481f4259b30SLisandro Dalcin NULL, 14826718818eSStefano Zampini MatTransposeMatMultSymbolic_MPIDense_MPIDense, 1483cb20be35SHong Zhang MatTransposeMatMultNumeric_MPIDense_MPIDense, 1484f4259b30SLisandro Dalcin NULL, 1485f4259b30SLisandro Dalcin /*134*/ NULL, 1486f4259b30SLisandro Dalcin NULL, 1487f4259b30SLisandro Dalcin NULL, 1488f4259b30SLisandro Dalcin NULL, 1489f4259b30SLisandro Dalcin NULL, 1490f4259b30SLisandro Dalcin /*139*/ NULL, 1491f4259b30SLisandro Dalcin NULL, 1492f4259b30SLisandro Dalcin NULL, 1493f4259b30SLisandro Dalcin NULL, 1494f4259b30SLisandro Dalcin NULL, 14954222ddf1SHong Zhang MatCreateMPIMatConcatenateSeqMat_MPIDense, 1496f4259b30SLisandro Dalcin /*145*/ NULL, 1497f4259b30SLisandro Dalcin NULL, 1498f4259b30SLisandro Dalcin NULL 1499ba337c44SJed Brown }; 15008965ea79SLois Curfman McInnes 15017087cfbeSBarry Smith PetscErrorCode MatMPIDenseSetPreallocation_MPIDense(Mat mat,PetscScalar *data) 1502a23d5eceSKris Buschelman { 1503637a0070SStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)mat->data; 1504637a0070SStefano Zampini PetscBool iscuda; 1505a23d5eceSKris Buschelman 1506a23d5eceSKris Buschelman PetscFunctionBegin; 150728b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 15089566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 15099566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 1510637a0070SStefano Zampini if (!a->A) { 15119566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF,&a->A)); 15129566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A)); 15139566063dSJacob Faibussowitsch PetscCall(MatSetSizes(a->A,mat->rmap->n,mat->cmap->N,mat->rmap->n,mat->cmap->N)); 1514637a0070SStefano Zampini } 15159566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)mat,MATMPIDENSECUDA,&iscuda)); 15169566063dSJacob Faibussowitsch PetscCall(MatSetType(a->A,iscuda ? MATSEQDENSECUDA : MATSEQDENSE)); 15179566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(a->A,data)); 1518637a0070SStefano Zampini mat->preallocated = PETSC_TRUE; 15196f08ad05SPierre Jolivet mat->assembled = PETSC_TRUE; 1520a23d5eceSKris Buschelman PetscFunctionReturn(0); 1521a23d5eceSKris Buschelman } 1522a23d5eceSKris Buschelman 15234e29119aSPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIDense(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 15244e29119aSPierre Jolivet { 15254e29119aSPierre Jolivet Mat B,C; 15264e29119aSPierre Jolivet 15274e29119aSPierre Jolivet PetscFunctionBegin; 15289566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(A,MAT_INITIAL_MATRIX,&C)); 15299566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqAIJ_SeqDense(C,MATSEQDENSE,MAT_INITIAL_MATRIX,&B)); 15309566063dSJacob Faibussowitsch PetscCall(MatDestroy(&C)); 15314e29119aSPierre Jolivet if (reuse == MAT_REUSE_MATRIX) { 15324e29119aSPierre Jolivet C = *newmat; 15334e29119aSPierre Jolivet } else C = NULL; 15349566063dSJacob Faibussowitsch PetscCall(MatCreateMPIMatConcatenateSeqMat(PetscObjectComm((PetscObject)A),B,A->cmap->n,!C?MAT_INITIAL_MATRIX:MAT_REUSE_MATRIX,&C)); 15359566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 15364e29119aSPierre Jolivet if (reuse == MAT_INPLACE_MATRIX) { 15379566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A,&C)); 15384e29119aSPierre Jolivet } else if (reuse == MAT_INITIAL_MATRIX) *newmat = C; 15394e29119aSPierre Jolivet PetscFunctionReturn(0); 15404e29119aSPierre Jolivet } 15414e29119aSPierre Jolivet 15424e29119aSPierre Jolivet PetscErrorCode MatConvert_MPIDense_MPIAIJ(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 15434e29119aSPierre Jolivet { 15444e29119aSPierre Jolivet Mat B,C; 15454e29119aSPierre Jolivet 15464e29119aSPierre Jolivet PetscFunctionBegin; 15479566063dSJacob Faibussowitsch PetscCall(MatDenseGetLocalMatrix(A,&C)); 15489566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqDense_SeqAIJ(C,MATSEQAIJ,MAT_INITIAL_MATRIX,&B)); 15494e29119aSPierre Jolivet if (reuse == MAT_REUSE_MATRIX) { 15504e29119aSPierre Jolivet C = *newmat; 15514e29119aSPierre Jolivet } else C = NULL; 15529566063dSJacob Faibussowitsch PetscCall(MatCreateMPIMatConcatenateSeqMat(PetscObjectComm((PetscObject)A),B,A->cmap->n,!C?MAT_INITIAL_MATRIX:MAT_REUSE_MATRIX,&C)); 15539566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 15544e29119aSPierre Jolivet if (reuse == MAT_INPLACE_MATRIX) { 15559566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A,&C)); 15564e29119aSPierre Jolivet } else if (reuse == MAT_INITIAL_MATRIX) *newmat = C; 15574e29119aSPierre Jolivet PetscFunctionReturn(0); 15584e29119aSPierre Jolivet } 15594e29119aSPierre Jolivet 156065b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 1561cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIDense_Elemental(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 15628baccfbdSHong Zhang { 15638ea901baSHong Zhang Mat mat_elemental; 156432d7a744SHong Zhang PetscScalar *v; 156532d7a744SHong Zhang PetscInt m=A->rmap->n,N=A->cmap->N,rstart=A->rmap->rstart,i,*rows,*cols; 15668ea901baSHong Zhang 15678baccfbdSHong Zhang PetscFunctionBegin; 1568378336b6SHong Zhang if (reuse == MAT_REUSE_MATRIX) { 1569378336b6SHong Zhang mat_elemental = *newmat; 15709566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(*newmat)); 1571378336b6SHong Zhang } else { 15729566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental)); 15739566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat_elemental,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N)); 15749566063dSJacob Faibussowitsch PetscCall(MatSetType(mat_elemental,MATELEMENTAL)); 15759566063dSJacob Faibussowitsch PetscCall(MatSetUp(mat_elemental)); 15769566063dSJacob Faibussowitsch PetscCall(MatSetOption(mat_elemental,MAT_ROW_ORIENTED,PETSC_FALSE)); 1577378336b6SHong Zhang } 1578378336b6SHong Zhang 15799566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m,&rows,N,&cols)); 158032d7a744SHong Zhang for (i=0; i<N; i++) cols[i] = i; 158132d7a744SHong Zhang for (i=0; i<m; i++) rows[i] = rstart + i; 15828ea901baSHong Zhang 1583637a0070SStefano Zampini /* PETSc-Elemental interface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */ 15849566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(A,&v)); 15859566063dSJacob Faibussowitsch PetscCall(MatSetValues(mat_elemental,m,rows,N,cols,v,ADD_VALUES)); 15869566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY)); 15879566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY)); 15889566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(A,&v)); 15899566063dSJacob Faibussowitsch PetscCall(PetscFree2(rows,cols)); 15908ea901baSHong Zhang 1591511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 15929566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A,&mat_elemental)); 15938ea901baSHong Zhang } else { 15948ea901baSHong Zhang *newmat = mat_elemental; 15958ea901baSHong Zhang } 15968baccfbdSHong Zhang PetscFunctionReturn(0); 15978baccfbdSHong Zhang } 159865b80a83SHong Zhang #endif 15998baccfbdSHong Zhang 1600af53bab2SHong Zhang static PetscErrorCode MatDenseGetColumn_MPIDense(Mat A,PetscInt col,PetscScalar **vals) 160186aefd0dSHong Zhang { 160286aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 160386aefd0dSHong Zhang 160486aefd0dSHong Zhang PetscFunctionBegin; 16059566063dSJacob Faibussowitsch PetscCall(MatDenseGetColumn(mat->A,col,vals)); 160686aefd0dSHong Zhang PetscFunctionReturn(0); 160786aefd0dSHong Zhang } 160886aefd0dSHong Zhang 1609af53bab2SHong Zhang static PetscErrorCode MatDenseRestoreColumn_MPIDense(Mat A,PetscScalar **vals) 161086aefd0dSHong Zhang { 161186aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 161286aefd0dSHong Zhang 161386aefd0dSHong Zhang PetscFunctionBegin; 16149566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreColumn(mat->A,vals)); 161586aefd0dSHong Zhang PetscFunctionReturn(0); 161686aefd0dSHong Zhang } 161786aefd0dSHong Zhang 161894e2cb23SJakub Kruzik PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIDense(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 161994e2cb23SJakub Kruzik { 162094e2cb23SJakub Kruzik Mat_MPIDense *mat; 162194e2cb23SJakub Kruzik PetscInt m,nloc,N; 162294e2cb23SJakub Kruzik 162394e2cb23SJakub Kruzik PetscFunctionBegin; 16249566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat,&m,&N)); 16259566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(inmat,NULL,&nloc)); 162694e2cb23SJakub Kruzik if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 162794e2cb23SJakub Kruzik PetscInt sum; 162894e2cb23SJakub Kruzik 162994e2cb23SJakub Kruzik if (n == PETSC_DECIDE) { 16309566063dSJacob Faibussowitsch PetscCall(PetscSplitOwnership(comm,&n,&N)); 163194e2cb23SJakub Kruzik } 163294e2cb23SJakub Kruzik /* Check sum(n) = N */ 16331c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm)); 163408401ef6SPierre Jolivet PetscCheck(sum == N,PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns %" PetscInt_FMT " != global columns %" PetscInt_FMT,sum,N); 163594e2cb23SJakub Kruzik 16369566063dSJacob Faibussowitsch PetscCall(MatCreateDense(comm,m,n,PETSC_DETERMINE,N,NULL,outmat)); 16379566063dSJacob Faibussowitsch PetscCall(MatSetOption(*outmat,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE)); 163894e2cb23SJakub Kruzik } 163994e2cb23SJakub Kruzik 164094e2cb23SJakub Kruzik /* numeric phase */ 164194e2cb23SJakub Kruzik mat = (Mat_MPIDense*)(*outmat)->data; 16429566063dSJacob Faibussowitsch PetscCall(MatCopy(inmat,mat->A,SAME_NONZERO_PATTERN)); 164394e2cb23SJakub Kruzik PetscFunctionReturn(0); 164494e2cb23SJakub Kruzik } 164594e2cb23SJakub Kruzik 1646637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1647637a0070SStefano Zampini PetscErrorCode MatConvert_MPIDenseCUDA_MPIDense(Mat M,MatType type,MatReuse reuse,Mat *newmat) 1648637a0070SStefano Zampini { 1649637a0070SStefano Zampini Mat B; 1650637a0070SStefano Zampini Mat_MPIDense *m; 1651637a0070SStefano Zampini 1652637a0070SStefano Zampini PetscFunctionBegin; 1653637a0070SStefano Zampini if (reuse == MAT_INITIAL_MATRIX) { 16549566063dSJacob Faibussowitsch PetscCall(MatDuplicate(M,MAT_COPY_VALUES,newmat)); 1655637a0070SStefano Zampini } else if (reuse == MAT_REUSE_MATRIX) { 16569566063dSJacob Faibussowitsch PetscCall(MatCopy(M,*newmat,SAME_NONZERO_PATTERN)); 1657637a0070SStefano Zampini } 1658637a0070SStefano Zampini 1659637a0070SStefano Zampini B = *newmat; 16609566063dSJacob Faibussowitsch PetscCall(MatBindToCPU_MPIDenseCUDA(B,PETSC_TRUE)); 16619566063dSJacob Faibussowitsch PetscCall(PetscFree(B->defaultvectype)); 16629566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(VECSTANDARD,&B->defaultvectype)); 16639566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B,MATMPIDENSE)); 16649566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpidensecuda_mpidense_C",NULL)); 16659566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaij_mpidensecuda_C",NULL)); 16669566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaijcusparse_mpidensecuda_C",NULL)); 16679566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaij_C",NULL)); 16689566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaijcusparse_C",NULL)); 16699566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArray_C",NULL)); 16709566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayRead_C",NULL)); 16719566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayWrite_C",NULL)); 16729566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArray_C",NULL)); 16739566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayRead_C",NULL)); 16749566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayWrite_C",NULL)); 16759566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAPlaceArray_C",NULL)); 16769566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAResetArray_C",NULL)); 16779566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAReplaceArray_C",NULL)); 1678637a0070SStefano Zampini m = (Mat_MPIDense*)(B)->data; 1679637a0070SStefano Zampini if (m->A) { 16809566063dSJacob Faibussowitsch PetscCall(MatConvert(m->A,MATSEQDENSE,MAT_INPLACE_MATRIX,&m->A)); 1681637a0070SStefano Zampini } 1682637a0070SStefano Zampini B->ops->bindtocpu = NULL; 1683637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_CPU; 1684637a0070SStefano Zampini PetscFunctionReturn(0); 1685637a0070SStefano Zampini } 1686637a0070SStefano Zampini 1687637a0070SStefano Zampini PetscErrorCode MatConvert_MPIDense_MPIDenseCUDA(Mat M,MatType type,MatReuse reuse,Mat *newmat) 1688637a0070SStefano Zampini { 1689637a0070SStefano Zampini Mat B; 1690637a0070SStefano Zampini Mat_MPIDense *m; 1691637a0070SStefano Zampini 1692637a0070SStefano Zampini PetscFunctionBegin; 1693637a0070SStefano Zampini if (reuse == MAT_INITIAL_MATRIX) { 16949566063dSJacob Faibussowitsch PetscCall(MatDuplicate(M,MAT_COPY_VALUES,newmat)); 1695637a0070SStefano Zampini } else if (reuse == MAT_REUSE_MATRIX) { 16969566063dSJacob Faibussowitsch PetscCall(MatCopy(M,*newmat,SAME_NONZERO_PATTERN)); 1697637a0070SStefano Zampini } 1698637a0070SStefano Zampini 1699637a0070SStefano Zampini B = *newmat; 17009566063dSJacob Faibussowitsch PetscCall(PetscFree(B->defaultvectype)); 17019566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(VECCUDA,&B->defaultvectype)); 17029566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B,MATMPIDENSECUDA)); 17039566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpidensecuda_mpidense_C", MatConvert_MPIDenseCUDA_MPIDense)); 17049566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaij_mpidensecuda_C", MatProductSetFromOptions_MPIAIJ_MPIDense)); 17059566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaijcusparse_mpidensecuda_C",MatProductSetFromOptions_MPIAIJ_MPIDense)); 17069566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaij_C", MatProductSetFromOptions_MPIDense_MPIAIJ)); 17079566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaijcusparse_C",MatProductSetFromOptions_MPIDense_MPIAIJ)); 17089566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArray_C", MatDenseCUDAGetArray_MPIDenseCUDA)); 17099566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayRead_C", MatDenseCUDAGetArrayRead_MPIDenseCUDA)); 17109566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayWrite_C", MatDenseCUDAGetArrayWrite_MPIDenseCUDA)); 17119566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArray_C", MatDenseCUDARestoreArray_MPIDenseCUDA)); 17129566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayRead_C", MatDenseCUDARestoreArrayRead_MPIDenseCUDA)); 17139566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayWrite_C", MatDenseCUDARestoreArrayWrite_MPIDenseCUDA)); 17149566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAPlaceArray_C", MatDenseCUDAPlaceArray_MPIDenseCUDA)); 17159566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAResetArray_C", MatDenseCUDAResetArray_MPIDenseCUDA)); 17169566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAReplaceArray_C", MatDenseCUDAReplaceArray_MPIDenseCUDA)); 1717f5ff9c66SStefano Zampini m = (Mat_MPIDense*)(B->data); 1718637a0070SStefano Zampini if (m->A) { 17199566063dSJacob Faibussowitsch PetscCall(MatConvert(m->A,MATSEQDENSECUDA,MAT_INPLACE_MATRIX,&m->A)); 1720637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_BOTH; 1721637a0070SStefano Zampini } else { 1722637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_UNALLOCATED; 1723637a0070SStefano Zampini } 17249566063dSJacob Faibussowitsch PetscCall(MatBindToCPU_MPIDenseCUDA(B,PETSC_FALSE)); 1725637a0070SStefano Zampini 1726637a0070SStefano Zampini B->ops->bindtocpu = MatBindToCPU_MPIDenseCUDA; 1727637a0070SStefano Zampini PetscFunctionReturn(0); 1728637a0070SStefano Zampini } 1729637a0070SStefano Zampini #endif 1730637a0070SStefano Zampini 17316947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVec_MPIDense(Mat A,PetscInt col,Vec *v) 17326947451fSStefano Zampini { 17336947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17346947451fSStefano Zampini PetscInt lda; 17356947451fSStefano Zampini 17366947451fSStefano Zampini PetscFunctionBegin; 173728b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 173828b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 17396947451fSStefano Zampini if (!a->cvec) { 17409566063dSJacob Faibussowitsch PetscCall(VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 17416947451fSStefano Zampini } 17426947451fSStefano Zampini a->vecinuse = col + 1; 17439566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 17449566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(a->A,(PetscScalar**)&a->ptrinuse)); 17459566063dSJacob Faibussowitsch PetscCall(VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 17466947451fSStefano Zampini *v = a->cvec; 17476947451fSStefano Zampini PetscFunctionReturn(0); 17486947451fSStefano Zampini } 17496947451fSStefano Zampini 17506947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVec_MPIDense(Mat A,PetscInt col,Vec *v) 17516947451fSStefano Zampini { 17526947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17536947451fSStefano Zampini 17546947451fSStefano Zampini PetscFunctionBegin; 175528b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 175628b400f6SJacob Faibussowitsch PetscCheck(a->cvec,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector"); 17576947451fSStefano Zampini a->vecinuse = 0; 17589566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(a->A,(PetscScalar**)&a->ptrinuse)); 17599566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 17606947451fSStefano Zampini *v = NULL; 17616947451fSStefano Zampini PetscFunctionReturn(0); 17626947451fSStefano Zampini } 17636947451fSStefano Zampini 17646947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecRead_MPIDense(Mat A,PetscInt col,Vec *v) 17656947451fSStefano Zampini { 17666947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17676947451fSStefano Zampini PetscInt lda; 17686947451fSStefano Zampini 17696947451fSStefano Zampini PetscFunctionBegin; 177028b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 177128b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 17726947451fSStefano Zampini if (!a->cvec) { 17739566063dSJacob Faibussowitsch PetscCall(VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 17746947451fSStefano Zampini } 17756947451fSStefano Zampini a->vecinuse = col + 1; 17769566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 17779566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A,&a->ptrinuse)); 17789566063dSJacob Faibussowitsch PetscCall(VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 17799566063dSJacob Faibussowitsch PetscCall(VecLockReadPush(a->cvec)); 17806947451fSStefano Zampini *v = a->cvec; 17816947451fSStefano Zampini PetscFunctionReturn(0); 17826947451fSStefano Zampini } 17836947451fSStefano Zampini 17846947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecRead_MPIDense(Mat A,PetscInt col,Vec *v) 17856947451fSStefano Zampini { 17866947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17876947451fSStefano Zampini 17886947451fSStefano Zampini PetscFunctionBegin; 17895f80ce2aSJacob Faibussowitsch PetscCheck(a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 17905f80ce2aSJacob Faibussowitsch PetscCheck(a->cvec,PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 17916947451fSStefano Zampini a->vecinuse = 0; 17929566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A,&a->ptrinuse)); 17939566063dSJacob Faibussowitsch PetscCall(VecLockReadPop(a->cvec)); 17949566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 17956947451fSStefano Zampini *v = NULL; 17966947451fSStefano Zampini PetscFunctionReturn(0); 17976947451fSStefano Zampini } 17986947451fSStefano Zampini 17996947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecWrite_MPIDense(Mat A,PetscInt col,Vec *v) 18006947451fSStefano Zampini { 18016947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 18026947451fSStefano Zampini PetscInt lda; 18036947451fSStefano Zampini 18046947451fSStefano Zampini PetscFunctionBegin; 18055f80ce2aSJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 18065f80ce2aSJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 18076947451fSStefano Zampini if (!a->cvec) { 18089566063dSJacob Faibussowitsch PetscCall(VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 18096947451fSStefano Zampini } 18106947451fSStefano Zampini a->vecinuse = col + 1; 18119566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 18129566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(a->A,(PetscScalar**)&a->ptrinuse)); 18139566063dSJacob Faibussowitsch PetscCall(VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 18146947451fSStefano Zampini *v = a->cvec; 18156947451fSStefano Zampini PetscFunctionReturn(0); 18166947451fSStefano Zampini } 18176947451fSStefano Zampini 18186947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDense(Mat A,PetscInt col,Vec *v) 18196947451fSStefano Zampini { 18206947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 18216947451fSStefano Zampini 18226947451fSStefano Zampini PetscFunctionBegin; 18235f80ce2aSJacob Faibussowitsch PetscCheck(a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 18245f80ce2aSJacob Faibussowitsch PetscCheck(a->cvec,PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 18256947451fSStefano Zampini a->vecinuse = 0; 18269566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(a->A,(PetscScalar**)&a->ptrinuse)); 18279566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 18286947451fSStefano Zampini *v = NULL; 18296947451fSStefano Zampini PetscFunctionReturn(0); 18306947451fSStefano Zampini } 18316947451fSStefano Zampini 1832a2748737SPierre Jolivet PetscErrorCode MatDenseGetSubMatrix_MPIDense(Mat A,PetscInt rbegin,PetscInt rend,PetscInt cbegin,PetscInt cend,Mat *v) 18335ea7661aSPierre Jolivet { 18345ea7661aSPierre Jolivet Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1835616b8fbbSStefano Zampini Mat_MPIDense *c; 1836616b8fbbSStefano Zampini MPI_Comm comm; 1837a2748737SPierre Jolivet PetscInt pbegin, pend; 18385ea7661aSPierre Jolivet 18395ea7661aSPierre Jolivet PetscFunctionBegin; 18409566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A,&comm)); 18415f80ce2aSJacob Faibussowitsch PetscCheck(!a->vecinuse,comm,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 18425f80ce2aSJacob Faibussowitsch PetscCheck(!a->matinuse,comm,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1843a2748737SPierre Jolivet pbegin = PetscMax(0,PetscMin(A->rmap->rend,rbegin)-A->rmap->rstart); 1844a2748737SPierre Jolivet pend = PetscMin(A->rmap->n,PetscMax(0,rend-A->rmap->rstart)); 18455ea7661aSPierre Jolivet if (!a->cmat) { 18469566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,&a->cmat)); 18479566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)a->cmat)); 18489566063dSJacob Faibussowitsch PetscCall(MatSetType(a->cmat,((PetscObject)A)->type_name)); 1849a2748737SPierre Jolivet if (rend-rbegin==A->rmap->N) PetscCall(PetscLayoutReference(A->rmap,&a->cmat->rmap)); 1850a2748737SPierre Jolivet else { 1851a2748737SPierre Jolivet PetscCall(PetscLayoutSetLocalSize(a->cmat->rmap,pend-pbegin)); 1852a2748737SPierre Jolivet PetscCall(PetscLayoutSetSize(a->cmat->rmap,rend-rbegin)); 1853a2748737SPierre Jolivet PetscCall(PetscLayoutSetUp(a->cmat->rmap)); 1854a2748737SPierre Jolivet } 18559566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(a->cmat->cmap,cend-cbegin)); 18569566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(a->cmat->cmap)); 1857a2748737SPierre Jolivet } else { 1858a2748737SPierre Jolivet PetscBool same = (PetscBool)(rend-rbegin == a->cmat->rmap->N); 1859a2748737SPierre Jolivet if (same && a->cmat->rmap->N != A->rmap->N) { 1860a2748737SPierre Jolivet same = (PetscBool)(pend-pbegin == a->cmat->rmap->n); 1861a2748737SPierre Jolivet PetscCall(MPIU_Allreduce(MPI_IN_PLACE,&same,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A))); 1862a2748737SPierre Jolivet } 1863a2748737SPierre Jolivet if (!same) { 1864a2748737SPierre Jolivet PetscCall(PetscLayoutDestroy(&a->cmat->rmap)); 1865a2748737SPierre Jolivet PetscCall(PetscLayoutCreate(comm,&a->cmat->rmap)); 1866a2748737SPierre Jolivet PetscCall(PetscLayoutSetLocalSize(a->cmat->rmap,pend-pbegin)); 1867a2748737SPierre Jolivet PetscCall(PetscLayoutSetSize(a->cmat->rmap,rend-rbegin)); 1868a2748737SPierre Jolivet PetscCall(PetscLayoutSetUp(a->cmat->rmap)); 1869a2748737SPierre Jolivet } 1870a2748737SPierre Jolivet if (cend-cbegin != a->cmat->cmap->N) { 18719566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&a->cmat->cmap)); 18729566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm,&a->cmat->cmap)); 18739566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(a->cmat->cmap,cend-cbegin)); 18749566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(a->cmat->cmap)); 18755ea7661aSPierre Jolivet } 1876a2748737SPierre Jolivet } 1877616b8fbbSStefano Zampini c = (Mat_MPIDense*)a->cmat->data; 18785f80ce2aSJacob Faibussowitsch PetscCheck(!c->A,comm,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1879a2748737SPierre Jolivet PetscCall(MatDenseGetSubMatrix(a->A,pbegin,pend,cbegin,cend,&c->A)); 1880616b8fbbSStefano Zampini a->cmat->preallocated = PETSC_TRUE; 1881616b8fbbSStefano Zampini a->cmat->assembled = PETSC_TRUE; 18825ea7661aSPierre Jolivet a->matinuse = cbegin + 1; 18835ea7661aSPierre Jolivet *v = a->cmat; 18845ea7661aSPierre Jolivet PetscFunctionReturn(0); 18855ea7661aSPierre Jolivet } 18865ea7661aSPierre Jolivet 18875ea7661aSPierre Jolivet PetscErrorCode MatDenseRestoreSubMatrix_MPIDense(Mat A,Mat *v) 18885ea7661aSPierre Jolivet { 18895ea7661aSPierre Jolivet Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1890616b8fbbSStefano Zampini Mat_MPIDense *c; 18915ea7661aSPierre Jolivet 18925ea7661aSPierre Jolivet PetscFunctionBegin; 18935f80ce2aSJacob Faibussowitsch PetscCheck(a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetSubMatrix() first"); 18945f80ce2aSJacob Faibussowitsch PetscCheck(a->cmat,PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal matrix"); 18955f80ce2aSJacob Faibussowitsch PetscCheck(*v == a->cmat,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Not the matrix obtained from MatDenseGetSubMatrix()"); 18965ea7661aSPierre Jolivet a->matinuse = 0; 1897616b8fbbSStefano Zampini c = (Mat_MPIDense*)a->cmat->data; 18989566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreSubMatrix(a->A,&c->A)); 18995ea7661aSPierre Jolivet *v = NULL; 19005ea7661aSPierre Jolivet PetscFunctionReturn(0); 19015ea7661aSPierre Jolivet } 19025ea7661aSPierre Jolivet 1903002bc6daSRichard Tran Mills /*MC 1904002bc6daSRichard Tran Mills MATMPIDENSE - MATMPIDENSE = "mpidense" - A matrix type to be used for distributed dense matrices. 1905002bc6daSRichard Tran Mills 1906002bc6daSRichard Tran Mills Options Database Keys: 1907002bc6daSRichard Tran Mills . -mat_type mpidense - sets the matrix type to "mpidense" during a call to MatSetFromOptions() 1908002bc6daSRichard Tran Mills 1909002bc6daSRichard Tran Mills Level: beginner 1910002bc6daSRichard Tran Mills 1911db781477SPatrick Sanan .seealso: `MatCreateDense()` 1912002bc6daSRichard Tran Mills 1913002bc6daSRichard Tran Mills M*/ 19148cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIDense(Mat mat) 1915273d9f13SBarry Smith { 1916273d9f13SBarry Smith Mat_MPIDense *a; 1917273d9f13SBarry Smith 1918273d9f13SBarry Smith PetscFunctionBegin; 19199566063dSJacob Faibussowitsch PetscCall(PetscNewLog(mat,&a)); 1920b0a32e0cSBarry Smith mat->data = (void*)a; 19219566063dSJacob Faibussowitsch PetscCall(PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps))); 1922273d9f13SBarry Smith 1923273d9f13SBarry Smith mat->insertmode = NOT_SET_VALUES; 1924273d9f13SBarry Smith 1925273d9f13SBarry Smith /* build cache for off array entries formed */ 1926273d9f13SBarry Smith a->donotstash = PETSC_FALSE; 19272205254eSKarl Rupp 19289566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)mat),1,&mat->stash)); 1929273d9f13SBarry Smith 1930273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 1931f4259b30SLisandro Dalcin a->lvec = NULL; 1932f4259b30SLisandro Dalcin a->Mvctx = NULL; 1933273d9f13SBarry Smith a->roworiented = PETSC_TRUE; 1934273d9f13SBarry Smith 19359566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",MatDenseGetLDA_MPIDense)); 19369566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseSetLDA_C",MatDenseSetLDA_MPIDense)); 19379566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",MatDenseGetArray_MPIDense)); 19389566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",MatDenseRestoreArray_MPIDense)); 19399566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",MatDenseGetArrayRead_MPIDense)); 19409566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",MatDenseRestoreArrayRead_MPIDense)); 19419566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayWrite_C",MatDenseGetArrayWrite_MPIDense)); 19429566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayWrite_C",MatDenseRestoreArrayWrite_MPIDense)); 19439566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",MatDensePlaceArray_MPIDense)); 19449566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",MatDenseResetArray_MPIDense)); 19459566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseReplaceArray_C",MatDenseReplaceArray_MPIDense)); 19469566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDense)); 19479566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDense)); 19489566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDense)); 19499566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDense)); 19509566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDense)); 19519566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDense)); 19529566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetSubMatrix_C",MatDenseGetSubMatrix_MPIDense)); 19539566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreSubMatrix_C",MatDenseRestoreSubMatrix_MPIDense)); 19549566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpiaij_mpidense_C",MatConvert_MPIAIJ_MPIDense)); 19559566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_mpiaij_C",MatConvert_MPIDense_MPIAIJ)); 19568baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 19579566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",MatConvert_MPIDense_Elemental)); 19588baccfbdSHong Zhang #endif 1959d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 19609566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_scalapack_C",MatConvert_Dense_ScaLAPACK)); 1961d24d4204SJose E. Roman #endif 1962637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 19639566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_mpidensecuda_C",MatConvert_MPIDense_MPIDenseCUDA)); 1964637a0070SStefano Zampini #endif 19659566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",MatMPIDenseSetPreallocation_MPIDense)); 19669566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaij_mpidense_C",MatProductSetFromOptions_MPIAIJ_MPIDense)); 19679566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaij_C",MatProductSetFromOptions_MPIDense_MPIAIJ)); 19686718818eSStefano Zampini #if defined(PETSC_HAVE_CUDA) 19699566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaijcusparse_mpidense_C",MatProductSetFromOptions_MPIAIJ_MPIDense)); 19709566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaijcusparse_C",MatProductSetFromOptions_MPIDense_MPIAIJ)); 19716718818eSStefano Zampini #endif 19728949adfdSHong Zhang 19739566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",MatDenseGetColumn_MPIDense)); 19749566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",MatDenseRestoreColumn_MPIDense)); 19759566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)mat,MATMPIDENSE)); 1976273d9f13SBarry Smith PetscFunctionReturn(0); 1977273d9f13SBarry Smith } 1978273d9f13SBarry Smith 1979209238afSKris Buschelman /*MC 1980637a0070SStefano Zampini MATMPIDENSECUDA - MATMPIDENSECUDA = "mpidensecuda" - A matrix type to be used for distributed dense matrices on GPUs. 1981637a0070SStefano Zampini 1982637a0070SStefano Zampini Options Database Keys: 1983637a0070SStefano Zampini . -mat_type mpidensecuda - sets the matrix type to "mpidensecuda" during a call to MatSetFromOptions() 1984637a0070SStefano Zampini 1985637a0070SStefano Zampini Level: beginner 1986637a0070SStefano Zampini 1987637a0070SStefano Zampini .seealso: 1988637a0070SStefano Zampini 1989637a0070SStefano Zampini M*/ 1990637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1991a4af0ceeSJacob Faibussowitsch #include <petsc/private/deviceimpl.h> 1992637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreate_MPIDenseCUDA(Mat B) 1993637a0070SStefano Zampini { 1994637a0070SStefano Zampini PetscFunctionBegin; 19959566063dSJacob Faibussowitsch PetscCall(PetscDeviceInitialize(PETSC_DEVICE_CUDA)); 19969566063dSJacob Faibussowitsch PetscCall(MatCreate_MPIDense(B)); 19979566063dSJacob Faibussowitsch PetscCall(MatConvert_MPIDense_MPIDenseCUDA(B,MATMPIDENSECUDA,MAT_INPLACE_MATRIX,&B)); 1998637a0070SStefano Zampini PetscFunctionReturn(0); 1999637a0070SStefano Zampini } 2000637a0070SStefano Zampini #endif 2001637a0070SStefano Zampini 2002637a0070SStefano Zampini /*MC 2003002d173eSKris Buschelman MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices. 2004209238afSKris Buschelman 2005209238afSKris Buschelman This matrix type is identical to MATSEQDENSE when constructed with a single process communicator, 2006209238afSKris Buschelman and MATMPIDENSE otherwise. 2007209238afSKris Buschelman 2008209238afSKris Buschelman Options Database Keys: 2009209238afSKris Buschelman . -mat_type dense - sets the matrix type to "dense" during a call to MatSetFromOptions() 2010209238afSKris Buschelman 2011209238afSKris Buschelman Level: beginner 2012209238afSKris Buschelman 2013c2e3fba1SPatrick Sanan .seealso: `MATSEQDENSE`, `MATMPIDENSE`, `MATDENSECUDA` 20146947451fSStefano Zampini M*/ 20156947451fSStefano Zampini 20166947451fSStefano Zampini /*MC 20176947451fSStefano Zampini MATDENSECUDA - MATDENSECUDA = "densecuda" - A matrix type to be used for dense matrices on GPUs. 20186947451fSStefano Zampini 20196947451fSStefano Zampini This matrix type is identical to MATSEQDENSECUDA when constructed with a single process communicator, 20206947451fSStefano Zampini and MATMPIDENSECUDA otherwise. 20216947451fSStefano Zampini 20226947451fSStefano Zampini Options Database Keys: 20236947451fSStefano Zampini . -mat_type densecuda - sets the matrix type to "densecuda" during a call to MatSetFromOptions() 20246947451fSStefano Zampini 20256947451fSStefano Zampini Level: beginner 20266947451fSStefano Zampini 2027c2e3fba1SPatrick Sanan .seealso: `MATSEQDENSECUDA`, `MATMPIDENSECUDA`, `MATDENSE` 2028209238afSKris Buschelman M*/ 2029209238afSKris Buschelman 2030273d9f13SBarry Smith /*@C 2031273d9f13SBarry Smith MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries 2032273d9f13SBarry Smith 20338f490ea3SStefano Zampini Collective 2034273d9f13SBarry Smith 2035273d9f13SBarry Smith Input Parameters: 20361c4f3114SJed Brown . B - the matrix 20370298fd71SBarry Smith - data - optional location of matrix data. Set data=NULL for PETSc 2038273d9f13SBarry Smith to control all matrix memory allocation. 2039273d9f13SBarry Smith 2040273d9f13SBarry Smith Notes: 2041273d9f13SBarry Smith The dense format is fully compatible with standard Fortran 77 2042273d9f13SBarry Smith storage by columns. 2043273d9f13SBarry Smith 2044273d9f13SBarry Smith The data input variable is intended primarily for Fortran programmers 2045273d9f13SBarry Smith who wish to allocate their own matrix memory space. Most users should 20460298fd71SBarry Smith set data=NULL. 2047273d9f13SBarry Smith 2048273d9f13SBarry Smith Level: intermediate 2049273d9f13SBarry Smith 2050db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqDense()`, `MatSetValues()` 2051273d9f13SBarry Smith @*/ 20521c4f3114SJed Brown PetscErrorCode MatMPIDenseSetPreallocation(Mat B,PetscScalar *data) 2053273d9f13SBarry Smith { 2054273d9f13SBarry Smith PetscFunctionBegin; 2055d5ea218eSStefano Zampini PetscValidHeaderSpecific(B,MAT_CLASSID,1); 2056cac4c232SBarry Smith PetscTryMethod(B,"MatMPIDenseSetPreallocation_C",(Mat,PetscScalar*),(B,data)); 2057273d9f13SBarry Smith PetscFunctionReturn(0); 2058273d9f13SBarry Smith } 2059273d9f13SBarry Smith 2060d3042a70SBarry Smith /*@ 2061637a0070SStefano Zampini MatDensePlaceArray - Allows one to replace the array in a dense matrix with an 2062d3042a70SBarry Smith array provided by the user. This is useful to avoid copying an array 2063d3042a70SBarry Smith into a matrix 2064d3042a70SBarry Smith 2065d3042a70SBarry Smith Not Collective 2066d3042a70SBarry Smith 2067d3042a70SBarry Smith Input Parameters: 2068d3042a70SBarry Smith + mat - the matrix 2069d3042a70SBarry Smith - array - the array in column major order 2070d3042a70SBarry Smith 2071d3042a70SBarry Smith Notes: 2072d3042a70SBarry Smith You can return to the original array with a call to MatDenseResetArray(). The user is responsible for freeing this array; it will not be 2073d3042a70SBarry Smith freed when the matrix is destroyed. 2074d3042a70SBarry Smith 2075d3042a70SBarry Smith Level: developer 2076d3042a70SBarry Smith 2077db781477SPatrick Sanan .seealso: `MatDenseGetArray()`, `MatDenseResetArray()`, `VecPlaceArray()`, `VecGetArray()`, `VecRestoreArray()`, `VecReplaceArray()`, `VecResetArray()` 2078d3042a70SBarry Smith 2079d3042a70SBarry Smith @*/ 2080637a0070SStefano Zampini PetscErrorCode MatDensePlaceArray(Mat mat,const PetscScalar *array) 2081d3042a70SBarry Smith { 2082d3042a70SBarry Smith PetscFunctionBegin; 2083d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2084cac4c232SBarry Smith PetscUseMethod(mat,"MatDensePlaceArray_C",(Mat,const PetscScalar*),(mat,array)); 20859566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2086637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 2087637a0070SStefano Zampini mat->offloadmask = PETSC_OFFLOAD_CPU; 2088637a0070SStefano Zampini #endif 2089d3042a70SBarry Smith PetscFunctionReturn(0); 2090d3042a70SBarry Smith } 2091d3042a70SBarry Smith 2092d3042a70SBarry Smith /*@ 2093d3042a70SBarry Smith MatDenseResetArray - Resets the matrix array to that it previously had before the call to MatDensePlaceArray() 2094d3042a70SBarry Smith 2095d3042a70SBarry Smith Not Collective 2096d3042a70SBarry Smith 2097d3042a70SBarry Smith Input Parameters: 2098d3042a70SBarry Smith . mat - the matrix 2099d3042a70SBarry Smith 2100d3042a70SBarry Smith Notes: 2101d3042a70SBarry Smith You can only call this after a call to MatDensePlaceArray() 2102d3042a70SBarry Smith 2103d3042a70SBarry Smith Level: developer 2104d3042a70SBarry Smith 2105db781477SPatrick Sanan .seealso: `MatDenseGetArray()`, `MatDensePlaceArray()`, `VecPlaceArray()`, `VecGetArray()`, `VecRestoreArray()`, `VecReplaceArray()`, `VecResetArray()` 2106d3042a70SBarry Smith 2107d3042a70SBarry Smith @*/ 2108d3042a70SBarry Smith PetscErrorCode MatDenseResetArray(Mat mat) 2109d3042a70SBarry Smith { 2110d3042a70SBarry Smith PetscFunctionBegin; 2111d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2112cac4c232SBarry Smith PetscUseMethod(mat,"MatDenseResetArray_C",(Mat),(mat)); 21139566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2114d3042a70SBarry Smith PetscFunctionReturn(0); 2115d3042a70SBarry Smith } 2116d3042a70SBarry Smith 2117d5ea218eSStefano Zampini /*@ 2118d5ea218eSStefano Zampini MatDenseReplaceArray - Allows one to replace the array in a dense matrix with an 2119d5ea218eSStefano Zampini array provided by the user. This is useful to avoid copying an array 2120d5ea218eSStefano Zampini into a matrix 2121d5ea218eSStefano Zampini 2122d5ea218eSStefano Zampini Not Collective 2123d5ea218eSStefano Zampini 2124d5ea218eSStefano Zampini Input Parameters: 2125d5ea218eSStefano Zampini + mat - the matrix 2126d5ea218eSStefano Zampini - array - the array in column major order 2127d5ea218eSStefano Zampini 2128d5ea218eSStefano Zampini Notes: 2129d5ea218eSStefano Zampini The memory passed in MUST be obtained with PetscMalloc() and CANNOT be 2130d5ea218eSStefano Zampini freed by the user. It will be freed when the matrix is destroyed. 2131d5ea218eSStefano Zampini 2132d5ea218eSStefano Zampini Level: developer 2133d5ea218eSStefano Zampini 2134db781477SPatrick Sanan .seealso: `MatDenseGetArray()`, `VecReplaceArray()` 2135d5ea218eSStefano Zampini @*/ 2136d5ea218eSStefano Zampini PetscErrorCode MatDenseReplaceArray(Mat mat,const PetscScalar *array) 2137d5ea218eSStefano Zampini { 2138d5ea218eSStefano Zampini PetscFunctionBegin; 2139d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2140cac4c232SBarry Smith PetscUseMethod(mat,"MatDenseReplaceArray_C",(Mat,const PetscScalar*),(mat,array)); 21419566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2142d5ea218eSStefano Zampini #if defined(PETSC_HAVE_CUDA) 2143d5ea218eSStefano Zampini mat->offloadmask = PETSC_OFFLOAD_CPU; 2144d5ea218eSStefano Zampini #endif 2145d5ea218eSStefano Zampini PetscFunctionReturn(0); 2146d5ea218eSStefano Zampini } 2147d5ea218eSStefano Zampini 2148637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 21498965ea79SLois Curfman McInnes /*@C 2150637a0070SStefano Zampini MatDenseCUDAPlaceArray - Allows one to replace the GPU array in a dense matrix with an 2151637a0070SStefano Zampini array provided by the user. This is useful to avoid copying an array 2152637a0070SStefano Zampini into a matrix 2153637a0070SStefano Zampini 2154637a0070SStefano Zampini Not Collective 2155637a0070SStefano Zampini 2156637a0070SStefano Zampini Input Parameters: 2157637a0070SStefano Zampini + mat - the matrix 2158637a0070SStefano Zampini - array - the array in column major order 2159637a0070SStefano Zampini 2160637a0070SStefano Zampini Notes: 2161637a0070SStefano Zampini You can return to the original array with a call to MatDenseCUDAResetArray(). The user is responsible for freeing this array; it will not be 2162637a0070SStefano Zampini freed when the matrix is destroyed. The array must have been allocated with cudaMalloc(). 2163637a0070SStefano Zampini 2164637a0070SStefano Zampini Level: developer 2165637a0070SStefano Zampini 2166db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDAResetArray()` 2167637a0070SStefano Zampini @*/ 2168637a0070SStefano Zampini PetscErrorCode MatDenseCUDAPlaceArray(Mat mat,const PetscScalar *array) 2169637a0070SStefano Zampini { 2170637a0070SStefano Zampini PetscFunctionBegin; 2171d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2172cac4c232SBarry Smith PetscUseMethod(mat,"MatDenseCUDAPlaceArray_C",(Mat,const PetscScalar*),(mat,array)); 21739566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2174637a0070SStefano Zampini mat->offloadmask = PETSC_OFFLOAD_GPU; 2175637a0070SStefano Zampini PetscFunctionReturn(0); 2176637a0070SStefano Zampini } 2177637a0070SStefano Zampini 2178637a0070SStefano Zampini /*@C 2179637a0070SStefano Zampini MatDenseCUDAResetArray - Resets the matrix array to that it previously had before the call to MatDenseCUDAPlaceArray() 2180637a0070SStefano Zampini 2181637a0070SStefano Zampini Not Collective 2182637a0070SStefano Zampini 2183637a0070SStefano Zampini Input Parameters: 2184637a0070SStefano Zampini . mat - the matrix 2185637a0070SStefano Zampini 2186637a0070SStefano Zampini Notes: 2187637a0070SStefano Zampini You can only call this after a call to MatDenseCUDAPlaceArray() 2188637a0070SStefano Zampini 2189637a0070SStefano Zampini Level: developer 2190637a0070SStefano Zampini 2191db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDAPlaceArray()` 2192637a0070SStefano Zampini 2193637a0070SStefano Zampini @*/ 2194637a0070SStefano Zampini PetscErrorCode MatDenseCUDAResetArray(Mat mat) 2195637a0070SStefano Zampini { 2196637a0070SStefano Zampini PetscFunctionBegin; 2197d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2198cac4c232SBarry Smith PetscUseMethod(mat,"MatDenseCUDAResetArray_C",(Mat),(mat)); 21999566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2200637a0070SStefano Zampini PetscFunctionReturn(0); 2201637a0070SStefano Zampini } 2202637a0070SStefano Zampini 2203637a0070SStefano Zampini /*@C 2204d5ea218eSStefano Zampini MatDenseCUDAReplaceArray - Allows one to replace the GPU array in a dense matrix with an 2205d5ea218eSStefano Zampini array provided by the user. This is useful to avoid copying an array 2206d5ea218eSStefano Zampini into a matrix 2207d5ea218eSStefano Zampini 2208d5ea218eSStefano Zampini Not Collective 2209d5ea218eSStefano Zampini 2210d5ea218eSStefano Zampini Input Parameters: 2211d5ea218eSStefano Zampini + mat - the matrix 2212d5ea218eSStefano Zampini - array - the array in column major order 2213d5ea218eSStefano Zampini 2214d5ea218eSStefano Zampini Notes: 2215d5ea218eSStefano Zampini This permanently replaces the GPU array and frees the memory associated with the old GPU array. 2216d5ea218eSStefano Zampini The memory passed in CANNOT be freed by the user. It will be freed 2217d5ea218eSStefano Zampini when the matrix is destroyed. The array should respect the matrix leading dimension. 2218d5ea218eSStefano Zampini 2219d5ea218eSStefano Zampini Level: developer 2220d5ea218eSStefano Zampini 2221db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDAPlaceArray()`, `MatDenseCUDAResetArray()` 2222d5ea218eSStefano Zampini @*/ 2223d5ea218eSStefano Zampini PetscErrorCode MatDenseCUDAReplaceArray(Mat mat,const PetscScalar *array) 2224d5ea218eSStefano Zampini { 2225d5ea218eSStefano Zampini PetscFunctionBegin; 2226d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2227cac4c232SBarry Smith PetscUseMethod(mat,"MatDenseCUDAReplaceArray_C",(Mat,const PetscScalar*),(mat,array)); 22289566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2229d5ea218eSStefano Zampini mat->offloadmask = PETSC_OFFLOAD_GPU; 2230d5ea218eSStefano Zampini PetscFunctionReturn(0); 2231d5ea218eSStefano Zampini } 2232d5ea218eSStefano Zampini 2233d5ea218eSStefano Zampini /*@C 2234637a0070SStefano Zampini MatDenseCUDAGetArrayWrite - Provides write access to the CUDA buffer inside a dense matrix. 2235637a0070SStefano Zampini 2236637a0070SStefano Zampini Not Collective 2237637a0070SStefano Zampini 2238637a0070SStefano Zampini Input Parameters: 2239637a0070SStefano Zampini . A - the matrix 2240637a0070SStefano Zampini 2241637a0070SStefano Zampini Output Parameters 2242637a0070SStefano Zampini . array - the GPU array in column major order 2243637a0070SStefano Zampini 2244637a0070SStefano Zampini Notes: 2245637a0070SStefano Zampini The data on the GPU may not be updated due to operations done on the CPU. If you need updated data, use MatDenseCUDAGetArray(). The array must be restored with MatDenseCUDARestoreArrayWrite() when no longer needed. 2246637a0070SStefano Zampini 2247637a0070SStefano Zampini Level: developer 2248637a0070SStefano Zampini 2249db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDARestoreArray()`, `MatDenseCUDARestoreArrayWrite()`, `MatDenseCUDAGetArrayRead()`, `MatDenseCUDARestoreArrayRead()` 2250637a0070SStefano Zampini @*/ 2251637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArrayWrite(Mat A, PetscScalar **a) 2252637a0070SStefano Zampini { 2253637a0070SStefano Zampini PetscFunctionBegin; 2254d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2255cac4c232SBarry Smith PetscUseMethod(A,"MatDenseCUDAGetArrayWrite_C",(Mat,PetscScalar**),(A,a)); 22569566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)A)); 2257637a0070SStefano Zampini PetscFunctionReturn(0); 2258637a0070SStefano Zampini } 2259637a0070SStefano Zampini 2260637a0070SStefano Zampini /*@C 2261637a0070SStefano Zampini MatDenseCUDARestoreArrayWrite - Restore write access to the CUDA buffer inside a dense matrix previously obtained with MatDenseCUDAGetArrayWrite(). 2262637a0070SStefano Zampini 2263637a0070SStefano Zampini Not Collective 2264637a0070SStefano Zampini 2265637a0070SStefano Zampini Input Parameters: 2266637a0070SStefano Zampini + A - the matrix 2267637a0070SStefano Zampini - array - the GPU array in column major order 2268637a0070SStefano Zampini 2269637a0070SStefano Zampini Notes: 2270637a0070SStefano Zampini 2271637a0070SStefano Zampini Level: developer 2272637a0070SStefano Zampini 2273db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDARestoreArray()`, `MatDenseCUDAGetArrayWrite()`, `MatDenseCUDARestoreArrayRead()`, `MatDenseCUDAGetArrayRead()` 2274637a0070SStefano Zampini @*/ 2275637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArrayWrite(Mat A, PetscScalar **a) 2276637a0070SStefano Zampini { 2277637a0070SStefano Zampini PetscFunctionBegin; 2278d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2279cac4c232SBarry Smith PetscUseMethod(A,"MatDenseCUDARestoreArrayWrite_C",(Mat,PetscScalar**),(A,a)); 22809566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)A)); 2281637a0070SStefano Zampini A->offloadmask = PETSC_OFFLOAD_GPU; 2282637a0070SStefano Zampini PetscFunctionReturn(0); 2283637a0070SStefano Zampini } 2284637a0070SStefano Zampini 2285637a0070SStefano Zampini /*@C 2286637a0070SStefano Zampini MatDenseCUDAGetArrayRead - Provides read-only access to the CUDA buffer inside a dense matrix. The array must be restored with MatDenseCUDARestoreArrayRead() when no longer needed. 2287637a0070SStefano Zampini 2288637a0070SStefano Zampini Not Collective 2289637a0070SStefano Zampini 2290637a0070SStefano Zampini Input Parameters: 2291637a0070SStefano Zampini . A - the matrix 2292637a0070SStefano Zampini 2293637a0070SStefano Zampini Output Parameters 2294637a0070SStefano Zampini . array - the GPU array in column major order 2295637a0070SStefano Zampini 2296637a0070SStefano Zampini Notes: 2297637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). 2298637a0070SStefano Zampini 2299637a0070SStefano Zampini Level: developer 2300637a0070SStefano Zampini 2301db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDARestoreArray()`, `MatDenseCUDARestoreArrayWrite()`, `MatDenseCUDAGetArrayWrite()`, `MatDenseCUDARestoreArrayRead()` 2302637a0070SStefano Zampini @*/ 2303637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArrayRead(Mat A, const PetscScalar **a) 2304637a0070SStefano Zampini { 2305637a0070SStefano Zampini PetscFunctionBegin; 2306d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2307cac4c232SBarry Smith PetscUseMethod(A,"MatDenseCUDAGetArrayRead_C",(Mat,const PetscScalar**),(A,a)); 2308637a0070SStefano Zampini PetscFunctionReturn(0); 2309637a0070SStefano Zampini } 2310637a0070SStefano Zampini 2311637a0070SStefano Zampini /*@C 2312637a0070SStefano Zampini MatDenseCUDARestoreArrayRead - Restore read-only access to the CUDA buffer inside a dense matrix previously obtained with a call to MatDenseCUDAGetArrayRead(). 2313637a0070SStefano Zampini 2314637a0070SStefano Zampini Not Collective 2315637a0070SStefano Zampini 2316637a0070SStefano Zampini Input Parameters: 2317637a0070SStefano Zampini + A - the matrix 2318637a0070SStefano Zampini - array - the GPU array in column major order 2319637a0070SStefano Zampini 2320637a0070SStefano Zampini Notes: 2321637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). 2322637a0070SStefano Zampini 2323637a0070SStefano Zampini Level: developer 2324637a0070SStefano Zampini 2325db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDARestoreArray()`, `MatDenseCUDARestoreArrayWrite()`, `MatDenseCUDAGetArrayWrite()`, `MatDenseCUDAGetArrayRead()` 2326637a0070SStefano Zampini @*/ 2327637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArrayRead(Mat A, const PetscScalar **a) 2328637a0070SStefano Zampini { 2329637a0070SStefano Zampini PetscFunctionBegin; 2330cac4c232SBarry Smith PetscUseMethod(A,"MatDenseCUDARestoreArrayRead_C",(Mat,const PetscScalar**),(A,a)); 2331637a0070SStefano Zampini PetscFunctionReturn(0); 2332637a0070SStefano Zampini } 2333637a0070SStefano Zampini 2334637a0070SStefano Zampini /*@C 2335637a0070SStefano Zampini MatDenseCUDAGetArray - Provides access to the CUDA buffer inside a dense matrix. The array must be restored with MatDenseCUDARestoreArray() when no longer needed. 2336637a0070SStefano Zampini 2337637a0070SStefano Zampini Not Collective 2338637a0070SStefano Zampini 2339637a0070SStefano Zampini Input Parameters: 2340637a0070SStefano Zampini . A - the matrix 2341637a0070SStefano Zampini 2342637a0070SStefano Zampini Output Parameters 2343637a0070SStefano Zampini . array - the GPU array in column major order 2344637a0070SStefano Zampini 2345637a0070SStefano Zampini Notes: 2346637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). For read-only access, use MatDenseCUDAGetArrayRead(). 2347637a0070SStefano Zampini 2348637a0070SStefano Zampini Level: developer 2349637a0070SStefano Zampini 2350db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArrayRead()`, `MatDenseCUDARestoreArray()`, `MatDenseCUDARestoreArrayWrite()`, `MatDenseCUDAGetArrayWrite()`, `MatDenseCUDARestoreArrayRead()` 2351637a0070SStefano Zampini @*/ 2352637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArray(Mat A, PetscScalar **a) 2353637a0070SStefano Zampini { 2354637a0070SStefano Zampini PetscFunctionBegin; 2355d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2356cac4c232SBarry Smith PetscUseMethod(A,"MatDenseCUDAGetArray_C",(Mat,PetscScalar**),(A,a)); 23579566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)A)); 2358637a0070SStefano Zampini PetscFunctionReturn(0); 2359637a0070SStefano Zampini } 2360637a0070SStefano Zampini 2361637a0070SStefano Zampini /*@C 2362637a0070SStefano Zampini MatDenseCUDARestoreArray - Restore access to the CUDA buffer inside a dense matrix previously obtained with MatDenseCUDAGetArray(). 2363637a0070SStefano Zampini 2364637a0070SStefano Zampini Not Collective 2365637a0070SStefano Zampini 2366637a0070SStefano Zampini Input Parameters: 2367637a0070SStefano Zampini + A - the matrix 2368637a0070SStefano Zampini - array - the GPU array in column major order 2369637a0070SStefano Zampini 2370637a0070SStefano Zampini Notes: 2371637a0070SStefano Zampini 2372637a0070SStefano Zampini Level: developer 2373637a0070SStefano Zampini 2374db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDARestoreArrayWrite()`, `MatDenseCUDAGetArrayWrite()`, `MatDenseCUDARestoreArrayRead()`, `MatDenseCUDAGetArrayRead()` 2375637a0070SStefano Zampini @*/ 2376637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArray(Mat A, PetscScalar **a) 2377637a0070SStefano Zampini { 2378637a0070SStefano Zampini PetscFunctionBegin; 2379d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2380cac4c232SBarry Smith PetscUseMethod(A,"MatDenseCUDARestoreArray_C",(Mat,PetscScalar**),(A,a)); 23819566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)A)); 2382637a0070SStefano Zampini A->offloadmask = PETSC_OFFLOAD_GPU; 2383637a0070SStefano Zampini PetscFunctionReturn(0); 2384637a0070SStefano Zampini } 2385637a0070SStefano Zampini #endif 2386637a0070SStefano Zampini 2387637a0070SStefano Zampini /*@C 2388637a0070SStefano Zampini MatCreateDense - Creates a matrix in dense format. 23898965ea79SLois Curfman McInnes 2390d083f849SBarry Smith Collective 2391db81eaa0SLois Curfman McInnes 23928965ea79SLois Curfman McInnes Input Parameters: 2393db81eaa0SLois Curfman McInnes + comm - MPI communicator 23948965ea79SLois Curfman McInnes . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2395db81eaa0SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 23968965ea79SLois Curfman McInnes . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 2397db81eaa0SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 23986cfe35ddSJose E. Roman - data - optional location of matrix data. Set data=NULL (PETSC_NULL_SCALAR for Fortran users) for PETSc 2399dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 24008965ea79SLois Curfman McInnes 24018965ea79SLois Curfman McInnes Output Parameter: 2402477f1c0bSLois Curfman McInnes . A - the matrix 24038965ea79SLois Curfman McInnes 2404b259b22eSLois Curfman McInnes Notes: 240539ddd567SLois Curfman McInnes The dense format is fully compatible with standard Fortran 77 240639ddd567SLois Curfman McInnes storage by columns. 2407002bc6daSRichard Tran Mills Note that, although local portions of the matrix are stored in column-major 2408002bc6daSRichard Tran Mills order, the matrix is partitioned across MPI ranks by row. 24098965ea79SLois Curfman McInnes 241018f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 241118f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 24126cfe35ddSJose E. Roman set data=NULL (PETSC_NULL_SCALAR for Fortran users). 241318f449edSLois Curfman McInnes 24148965ea79SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 24158965ea79SLois Curfman McInnes (possibly both). 24168965ea79SLois Curfman McInnes 2417027ccd11SLois Curfman McInnes Level: intermediate 2418027ccd11SLois Curfman McInnes 2419db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqDense()`, `MatSetValues()` 24208965ea79SLois Curfman McInnes @*/ 242169b1f4b7SBarry Smith PetscErrorCode MatCreateDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 24228965ea79SLois Curfman McInnes { 24233a40ed3dSBarry Smith PetscFunctionBegin; 24249566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,A)); 24259566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A,m,n,M,N)); 24266f08ad05SPierre Jolivet PetscCall(MatSetType(*A,MATDENSE)); 24279566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(*A,data)); 24286f08ad05SPierre Jolivet PetscCall(MatMPIDenseSetPreallocation(*A,data)); 24293a40ed3dSBarry Smith PetscFunctionReturn(0); 24308965ea79SLois Curfman McInnes } 24318965ea79SLois Curfman McInnes 2432637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 2433637a0070SStefano Zampini /*@C 2434637a0070SStefano Zampini MatCreateDenseCUDA - Creates a matrix in dense format using CUDA. 2435637a0070SStefano Zampini 2436637a0070SStefano Zampini Collective 2437637a0070SStefano Zampini 2438637a0070SStefano Zampini Input Parameters: 2439637a0070SStefano Zampini + comm - MPI communicator 2440637a0070SStefano Zampini . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2441637a0070SStefano Zampini . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 2442637a0070SStefano Zampini . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 2443637a0070SStefano Zampini . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 2444637a0070SStefano Zampini - data - optional location of GPU matrix data. Set data=NULL for PETSc 2445637a0070SStefano Zampini to control matrix memory allocation. 2446637a0070SStefano Zampini 2447637a0070SStefano Zampini Output Parameter: 2448637a0070SStefano Zampini . A - the matrix 2449637a0070SStefano Zampini 2450637a0070SStefano Zampini Notes: 2451637a0070SStefano Zampini 2452637a0070SStefano Zampini Level: intermediate 2453637a0070SStefano Zampini 2454db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateDense()` 2455637a0070SStefano Zampini @*/ 2456637a0070SStefano Zampini PetscErrorCode MatCreateDenseCUDA(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 2457637a0070SStefano Zampini { 2458637a0070SStefano Zampini PetscFunctionBegin; 24599566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,A)); 2460637a0070SStefano Zampini PetscValidLogicalCollectiveBool(*A,!!data,6); 24619566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A,m,n,M,N)); 24626f08ad05SPierre Jolivet PetscCall(MatSetType(*A,MATDENSECUDA)); 24639566063dSJacob Faibussowitsch PetscCall(MatSeqDenseCUDASetPreallocation(*A,data)); 24646f08ad05SPierre Jolivet PetscCall(MatMPIDenseCUDASetPreallocation(*A,data)); 2465637a0070SStefano Zampini PetscFunctionReturn(0); 2466637a0070SStefano Zampini } 2467637a0070SStefano Zampini #endif 2468637a0070SStefano Zampini 24696849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat) 24708965ea79SLois Curfman McInnes { 24718965ea79SLois Curfman McInnes Mat mat; 24723501a2bdSLois Curfman McInnes Mat_MPIDense *a,*oldmat = (Mat_MPIDense*)A->data; 24738965ea79SLois Curfman McInnes 24743a40ed3dSBarry Smith PetscFunctionBegin; 2475f4259b30SLisandro Dalcin *newmat = NULL; 24769566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&mat)); 24779566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N)); 24789566063dSJacob Faibussowitsch PetscCall(MatSetType(mat,((PetscObject)A)->type_name)); 2479834f8fabSBarry Smith a = (Mat_MPIDense*)mat->data; 24805aa7edbeSHong Zhang 2481d5f3da31SBarry Smith mat->factortype = A->factortype; 2482c456f294SBarry Smith mat->assembled = PETSC_TRUE; 2483273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 24848965ea79SLois Curfman McInnes 2485e0fa3b82SLois Curfman McInnes mat->insertmode = NOT_SET_VALUES; 24863782ba37SSatish Balay a->donotstash = oldmat->donotstash; 2487e04c1aa4SHong Zhang 24889566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->rmap,&mat->rmap)); 24899566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->cmap,&mat->cmap)); 24908965ea79SLois Curfman McInnes 24919566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A,cpvalues,&a->A)); 24929566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A)); 249301b82886SBarry Smith 24948965ea79SLois Curfman McInnes *newmat = mat; 24953a40ed3dSBarry Smith PetscFunctionReturn(0); 24968965ea79SLois Curfman McInnes } 24978965ea79SLois Curfman McInnes 2498eb91f321SVaclav Hapla PetscErrorCode MatLoad_MPIDense(Mat newMat, PetscViewer viewer) 2499eb91f321SVaclav Hapla { 250087d5ce66SSatish Balay PetscBool isbinary; 250187d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 250287d5ce66SSatish Balay PetscBool ishdf5; 250387d5ce66SSatish Balay #endif 2504eb91f321SVaclav Hapla 2505eb91f321SVaclav Hapla PetscFunctionBegin; 2506eb91f321SVaclav Hapla PetscValidHeaderSpecific(newMat,MAT_CLASSID,1); 2507eb91f321SVaclav Hapla PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2); 2508eb91f321SVaclav Hapla /* force binary viewer to load .info file if it has not yet done so */ 25099566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 25109566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary)); 251187d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 25129566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERHDF5, &ishdf5)); 251387d5ce66SSatish Balay #endif 2514eb91f321SVaclav Hapla if (isbinary) { 25159566063dSJacob Faibussowitsch PetscCall(MatLoad_Dense_Binary(newMat,viewer)); 2516eb91f321SVaclav Hapla #if defined(PETSC_HAVE_HDF5) 251787d5ce66SSatish Balay } else if (ishdf5) { 25189566063dSJacob Faibussowitsch PetscCall(MatLoad_Dense_HDF5(newMat,viewer)); 2519eb91f321SVaclav Hapla #endif 252098921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)newMat),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)newMat)->type_name); 2521eb91f321SVaclav Hapla PetscFunctionReturn(0); 2522eb91f321SVaclav Hapla } 2523eb91f321SVaclav Hapla 25246718818eSStefano Zampini static PetscErrorCode MatEqual_MPIDense(Mat A,Mat B,PetscBool *flag) 25256e4ee0c6SHong Zhang { 25266e4ee0c6SHong Zhang Mat_MPIDense *matB = (Mat_MPIDense*)B->data,*matA = (Mat_MPIDense*)A->data; 25276e4ee0c6SHong Zhang Mat a,b; 252890ace30eSBarry Smith 25296e4ee0c6SHong Zhang PetscFunctionBegin; 25306e4ee0c6SHong Zhang a = matA->A; 25316e4ee0c6SHong Zhang b = matB->A; 25322cf15c64SPierre Jolivet PetscCall(MatEqual(a,b,flag)); 25332cf15c64SPierre Jolivet PetscCall(MPIU_Allreduce(MPI_IN_PLACE,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A))); 25346e4ee0c6SHong Zhang PetscFunctionReturn(0); 25356e4ee0c6SHong Zhang } 253690ace30eSBarry Smith 25376718818eSStefano Zampini PetscErrorCode MatDestroy_MatTransMatMult_MPIDense_MPIDense(void *data) 2538baa3c1c6SHong Zhang { 25396718818eSStefano Zampini Mat_TransMatMultDense *atb = (Mat_TransMatMultDense *)data; 2540baa3c1c6SHong Zhang 2541baa3c1c6SHong Zhang PetscFunctionBegin; 25429566063dSJacob Faibussowitsch PetscCall(PetscFree2(atb->sendbuf,atb->recvcounts)); 25439566063dSJacob Faibussowitsch PetscCall(MatDestroy(&atb->atb)); 25449566063dSJacob Faibussowitsch PetscCall(PetscFree(atb)); 2545baa3c1c6SHong Zhang PetscFunctionReturn(0); 2546baa3c1c6SHong Zhang } 2547baa3c1c6SHong Zhang 25486718818eSStefano Zampini PetscErrorCode MatDestroy_MatMatTransMult_MPIDense_MPIDense(void *data) 2549cc48ffa7SToby Isaac { 25506718818eSStefano Zampini Mat_MatTransMultDense *abt = (Mat_MatTransMultDense *)data; 2551cc48ffa7SToby Isaac 2552cc48ffa7SToby Isaac PetscFunctionBegin; 25539566063dSJacob Faibussowitsch PetscCall(PetscFree2(abt->buf[0],abt->buf[1])); 25549566063dSJacob Faibussowitsch PetscCall(PetscFree2(abt->recvcounts,abt->recvdispls)); 25559566063dSJacob Faibussowitsch PetscCall(PetscFree(abt)); 2556cc48ffa7SToby Isaac PetscFunctionReturn(0); 2557cc48ffa7SToby Isaac } 2558cc48ffa7SToby Isaac 25596718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 2560cb20be35SHong Zhang { 2561baa3c1c6SHong Zhang Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 25626718818eSStefano Zampini Mat_TransMatMultDense *atb; 2563cb20be35SHong Zhang MPI_Comm comm; 25646718818eSStefano Zampini PetscMPIInt size,*recvcounts; 25656718818eSStefano Zampini PetscScalar *carray,*sendbuf; 2566637a0070SStefano Zampini const PetscScalar *atbarray; 2567a1f9a5e6SStefano Zampini PetscInt i,cN=C->cmap->N,proc,k,j,lda; 2568e68c0b26SHong Zhang const PetscInt *ranges; 2569cb20be35SHong Zhang 2570cb20be35SHong Zhang PetscFunctionBegin; 25716718818eSStefano Zampini MatCheckProduct(C,3); 25725f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 25736718818eSStefano Zampini atb = (Mat_TransMatMultDense *)C->product->data; 25746718818eSStefano Zampini recvcounts = atb->recvcounts; 25756718818eSStefano Zampini sendbuf = atb->sendbuf; 25766718818eSStefano Zampini 25779566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A,&comm)); 25789566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 2579e68c0b26SHong Zhang 2580c5ef1628SHong Zhang /* compute atbarray = aseq^T * bseq */ 25819566063dSJacob Faibussowitsch PetscCall(MatTransposeMatMult(a->A,b->A,atb->atb ? MAT_REUSE_MATRIX : MAT_INITIAL_MATRIX,PETSC_DEFAULT,&atb->atb)); 2582cb20be35SHong Zhang 25839566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRanges(C,&ranges)); 2584cb20be35SHong Zhang 2585660d5466SHong Zhang /* arrange atbarray into sendbuf */ 25869566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(atb->atb,&atbarray)); 25879566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(atb->atb,&lda)); 2588637a0070SStefano Zampini for (proc=0, k=0; proc<size; proc++) { 2589baa3c1c6SHong Zhang for (j=0; j<cN; j++) { 2590a1f9a5e6SStefano Zampini for (i=ranges[proc]; i<ranges[proc+1]; i++) sendbuf[k++] = atbarray[i+j*lda]; 2591cb20be35SHong Zhang } 2592cb20be35SHong Zhang } 25939566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(atb->atb,&atbarray)); 2594637a0070SStefano Zampini 2595c5ef1628SHong Zhang /* sum all atbarray to local values of C */ 25969566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(c->A,&carray)); 25979566063dSJacob Faibussowitsch PetscCallMPI(MPI_Reduce_scatter(sendbuf,carray,recvcounts,MPIU_SCALAR,MPIU_SUM,comm)); 25989566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(c->A,&carray)); 25999566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY)); 26009566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY)); 2601cb20be35SHong Zhang PetscFunctionReturn(0); 2602cb20be35SHong Zhang } 2603cb20be35SHong Zhang 26046718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat C) 2605cb20be35SHong Zhang { 2606cb20be35SHong Zhang MPI_Comm comm; 2607baa3c1c6SHong Zhang PetscMPIInt size; 2608660d5466SHong Zhang PetscInt cm=A->cmap->n,cM,cN=B->cmap->N; 2609baa3c1c6SHong Zhang Mat_TransMatMultDense *atb; 26106718818eSStefano Zampini PetscBool cisdense; 26110acaeb71SStefano Zampini PetscInt i; 26120acaeb71SStefano Zampini const PetscInt *ranges; 2613cb20be35SHong Zhang 2614cb20be35SHong Zhang PetscFunctionBegin; 26156718818eSStefano Zampini MatCheckProduct(C,3); 26165f80ce2aSJacob Faibussowitsch PetscCheck(!C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty"); 26179566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A,&comm)); 2618cb20be35SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) { 261998921bdaSJacob Faibussowitsch SETERRQ(comm,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != B (%" PetscInt_FMT ",%" PetscInt_FMT ")",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 2620cb20be35SHong Zhang } 2621cb20be35SHong Zhang 26224222ddf1SHong Zhang /* create matrix product C */ 26239566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C,cm,B->cmap->n,A->cmap->N,B->cmap->N)); 26249566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C,&cisdense,MATMPIDENSE,MATMPIDENSECUDA,"")); 26256718818eSStefano Zampini if (!cisdense) { 26269566063dSJacob Faibussowitsch PetscCall(MatSetType(C,((PetscObject)A)->type_name)); 26276718818eSStefano Zampini } 26289566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 2629baa3c1c6SHong Zhang 26304222ddf1SHong Zhang /* create data structure for reuse C */ 26319566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 26329566063dSJacob Faibussowitsch PetscCall(PetscNew(&atb)); 26334222ddf1SHong Zhang cM = C->rmap->N; 26349566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(cM*cN,&atb->sendbuf,size,&atb->recvcounts)); 26359566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRanges(C,&ranges)); 26360acaeb71SStefano Zampini for (i=0; i<size; i++) atb->recvcounts[i] = (ranges[i+1] - ranges[i])*cN; 2637baa3c1c6SHong Zhang 26386718818eSStefano Zampini C->product->data = atb; 26396718818eSStefano Zampini C->product->destroy = MatDestroy_MatTransMatMult_MPIDense_MPIDense; 2640cb20be35SHong Zhang PetscFunctionReturn(0); 2641cb20be35SHong Zhang } 2642cb20be35SHong Zhang 26434222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat A, Mat B, PetscReal fill, Mat C) 2644cb20be35SHong Zhang { 2645cc48ffa7SToby Isaac MPI_Comm comm; 2646cc48ffa7SToby Isaac PetscMPIInt i, size; 2647cc48ffa7SToby Isaac PetscInt maxRows, bufsiz; 2648cc48ffa7SToby Isaac PetscMPIInt tag; 26494222ddf1SHong Zhang PetscInt alg; 2650cc48ffa7SToby Isaac Mat_MatTransMultDense *abt; 26514222ddf1SHong Zhang Mat_Product *product = C->product; 26524222ddf1SHong Zhang PetscBool flg; 2653cc48ffa7SToby Isaac 2654cc48ffa7SToby Isaac PetscFunctionBegin; 26556718818eSStefano Zampini MatCheckProduct(C,4); 26565f80ce2aSJacob Faibussowitsch PetscCheck(!C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty"); 26574222ddf1SHong Zhang /* check local size of A and B */ 26585f80ce2aSJacob Faibussowitsch PetscCheck(A->cmap->n == B->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local column dimensions are incompatible, A (%" PetscInt_FMT ") != B (%" PetscInt_FMT ")",A->cmap->n,B->cmap->n); 2659cc48ffa7SToby Isaac 26609566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg,"allgatherv",&flg)); 2661637a0070SStefano Zampini alg = flg ? 0 : 1; 2662cc48ffa7SToby Isaac 26634222ddf1SHong Zhang /* setup matrix product C */ 26649566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C,A->rmap->n,B->rmap->n,A->rmap->N,B->rmap->N)); 26659566063dSJacob Faibussowitsch PetscCall(MatSetType(C,MATMPIDENSE)); 26669566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 26679566063dSJacob Faibussowitsch PetscCall(PetscObjectGetNewTag((PetscObject)C,&tag)); 26684222ddf1SHong Zhang 26694222ddf1SHong Zhang /* create data structure for reuse C */ 26709566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C,&comm)); 26719566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 26729566063dSJacob Faibussowitsch PetscCall(PetscNew(&abt)); 2673cc48ffa7SToby Isaac abt->tag = tag; 2674faa55883SToby Isaac abt->alg = alg; 2675faa55883SToby Isaac switch (alg) { 26764222ddf1SHong Zhang case 1: /* alg: "cyclic" */ 2677cc48ffa7SToby Isaac for (maxRows = 0, i = 0; i < size; i++) maxRows = PetscMax(maxRows, (B->rmap->range[i + 1] - B->rmap->range[i])); 2678cc48ffa7SToby Isaac bufsiz = A->cmap->N * maxRows; 26799566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(bufsiz,&(abt->buf[0]),bufsiz,&(abt->buf[1]))); 2680faa55883SToby Isaac break; 26814222ddf1SHong Zhang default: /* alg: "allgatherv" */ 26829566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(B->rmap->n * B->cmap->N, &(abt->buf[0]), B->rmap->N * B->cmap->N, &(abt->buf[1]))); 26839566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(size,&(abt->recvcounts),size+1,&(abt->recvdispls))); 2684faa55883SToby Isaac for (i = 0; i <= size; i++) abt->recvdispls[i] = B->rmap->range[i] * A->cmap->N; 2685faa55883SToby Isaac for (i = 0; i < size; i++) abt->recvcounts[i] = abt->recvdispls[i + 1] - abt->recvdispls[i]; 2686faa55883SToby Isaac break; 2687faa55883SToby Isaac } 2688cc48ffa7SToby Isaac 26896718818eSStefano Zampini C->product->data = abt; 26906718818eSStefano Zampini C->product->destroy = MatDestroy_MatMatTransMult_MPIDense_MPIDense; 26914222ddf1SHong Zhang C->ops->mattransposemultnumeric = MatMatTransposeMultNumeric_MPIDense_MPIDense; 2692cc48ffa7SToby Isaac PetscFunctionReturn(0); 2693cc48ffa7SToby Isaac } 2694cc48ffa7SToby Isaac 2695faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(Mat A, Mat B, Mat C) 2696cc48ffa7SToby Isaac { 2697cc48ffa7SToby Isaac Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 26986718818eSStefano Zampini Mat_MatTransMultDense *abt; 2699cc48ffa7SToby Isaac MPI_Comm comm; 2700cc48ffa7SToby Isaac PetscMPIInt rank,size, sendsiz, recvsiz, sendto, recvfrom, recvisfrom; 2701f4259b30SLisandro Dalcin PetscScalar *sendbuf, *recvbuf=NULL, *cv; 2702cc48ffa7SToby Isaac PetscInt i,cK=A->cmap->N,k,j,bn; 2703cc48ffa7SToby Isaac PetscScalar _DOne=1.0,_DZero=0.0; 2704637a0070SStefano Zampini const PetscScalar *av,*bv; 270523fff9afSBarry Smith PetscBLASInt cm, cn, ck, alda, blda = 0, clda; 2706cc48ffa7SToby Isaac MPI_Request reqs[2]; 2707cc48ffa7SToby Isaac const PetscInt *ranges; 2708cc48ffa7SToby Isaac 2709cc48ffa7SToby Isaac PetscFunctionBegin; 27106718818eSStefano Zampini MatCheckProduct(C,3); 27115f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 27126718818eSStefano Zampini abt = (Mat_MatTransMultDense*)C->product->data; 27139566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C,&comm)); 27149566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm,&rank)); 27159566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 27169566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A,&av)); 27179566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(b->A,&bv)); 27189566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(c->A,&cv)); 27199566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&i)); 27209566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i,&alda)); 27219566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(b->A,&i)); 27229566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i,&blda)); 27239566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(c->A,&i)); 27249566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i,&clda)); 27259566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRanges(B,&ranges)); 2726cc48ffa7SToby Isaac bn = B->rmap->n; 2727637a0070SStefano Zampini if (blda == bn) { 2728637a0070SStefano Zampini sendbuf = (PetscScalar*)bv; 2729cc48ffa7SToby Isaac } else { 2730cc48ffa7SToby Isaac sendbuf = abt->buf[0]; 2731cc48ffa7SToby Isaac for (k = 0, i = 0; i < cK; i++) { 2732cc48ffa7SToby Isaac for (j = 0; j < bn; j++, k++) { 2733637a0070SStefano Zampini sendbuf[k] = bv[i * blda + j]; 2734cc48ffa7SToby Isaac } 2735cc48ffa7SToby Isaac } 2736cc48ffa7SToby Isaac } 2737cc48ffa7SToby Isaac if (size > 1) { 2738cc48ffa7SToby Isaac sendto = (rank + size - 1) % size; 2739cc48ffa7SToby Isaac recvfrom = (rank + size + 1) % size; 2740cc48ffa7SToby Isaac } else { 2741cc48ffa7SToby Isaac sendto = recvfrom = 0; 2742cc48ffa7SToby Isaac } 27439566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(cK,&ck)); 27449566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(c->A->rmap->n,&cm)); 2745cc48ffa7SToby Isaac recvisfrom = rank; 2746cc48ffa7SToby Isaac for (i = 0; i < size; i++) { 2747cc48ffa7SToby Isaac /* we have finished receiving in sending, bufs can be read/modified */ 2748cc48ffa7SToby Isaac PetscInt nextrecvisfrom = (recvisfrom + 1) % size; /* which process the next recvbuf will originate on */ 2749cc48ffa7SToby Isaac PetscInt nextbn = ranges[nextrecvisfrom + 1] - ranges[nextrecvisfrom]; 2750cc48ffa7SToby Isaac 2751cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2752cc48ffa7SToby Isaac /* start the cyclic sends from sendbuf, to recvbuf (which will switch to sendbuf) */ 2753cc48ffa7SToby Isaac sendsiz = cK * bn; 2754cc48ffa7SToby Isaac recvsiz = cK * nextbn; 2755cc48ffa7SToby Isaac recvbuf = (i & 1) ? abt->buf[0] : abt->buf[1]; 27569566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(sendbuf, sendsiz, MPIU_SCALAR, sendto, abt->tag, comm, &reqs[0])); 27579566063dSJacob Faibussowitsch PetscCallMPI(MPI_Irecv(recvbuf, recvsiz, MPIU_SCALAR, recvfrom, abt->tag, comm, &reqs[1])); 2758cc48ffa7SToby Isaac } 2759cc48ffa7SToby Isaac 2760cc48ffa7SToby Isaac /* local aseq * sendbuf^T */ 27619566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(ranges[recvisfrom + 1] - ranges[recvisfrom], &cn)); 276250ce3c9cSStefano Zampini if (cm && cn && ck) PetscStackCallBLAS("BLASgemm",BLASgemm_("N","T",&cm,&cn,&ck,&_DOne,av,&alda,sendbuf,&cn,&_DZero,cv + clda * ranges[recvisfrom],&clda)); 2763cc48ffa7SToby Isaac 2764cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2765cc48ffa7SToby Isaac /* wait for the sends and receives to complete, swap sendbuf and recvbuf */ 27669566063dSJacob Faibussowitsch PetscCallMPI(MPI_Waitall(2, reqs, MPI_STATUSES_IGNORE)); 2767cc48ffa7SToby Isaac } 2768cc48ffa7SToby Isaac bn = nextbn; 2769cc48ffa7SToby Isaac recvisfrom = nextrecvisfrom; 2770cc48ffa7SToby Isaac sendbuf = recvbuf; 2771cc48ffa7SToby Isaac } 27729566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A,&av)); 27739566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(b->A,&bv)); 27749566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(c->A,&cv)); 27759566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY)); 27769566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY)); 2777cc48ffa7SToby Isaac PetscFunctionReturn(0); 2778cc48ffa7SToby Isaac } 2779cc48ffa7SToby Isaac 2780faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(Mat A, Mat B, Mat C) 2781faa55883SToby Isaac { 2782faa55883SToby Isaac Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 27836718818eSStefano Zampini Mat_MatTransMultDense *abt; 2784faa55883SToby Isaac MPI_Comm comm; 2785637a0070SStefano Zampini PetscMPIInt size; 2786637a0070SStefano Zampini PetscScalar *cv, *sendbuf, *recvbuf; 2787637a0070SStefano Zampini const PetscScalar *av,*bv; 2788637a0070SStefano Zampini PetscInt blda,i,cK=A->cmap->N,k,j,bn; 2789faa55883SToby Isaac PetscScalar _DOne=1.0,_DZero=0.0; 2790637a0070SStefano Zampini PetscBLASInt cm, cn, ck, alda, clda; 2791faa55883SToby Isaac 2792faa55883SToby Isaac PetscFunctionBegin; 27936718818eSStefano Zampini MatCheckProduct(C,3); 27945f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 27956718818eSStefano Zampini abt = (Mat_MatTransMultDense*)C->product->data; 27969566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A,&comm)); 27979566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 27989566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A,&av)); 27999566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(b->A,&bv)); 28009566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(c->A,&cv)); 28019566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&i)); 28029566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i,&alda)); 28039566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(b->A,&blda)); 28049566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(c->A,&i)); 28059566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i,&clda)); 2806faa55883SToby Isaac /* copy transpose of B into buf[0] */ 2807faa55883SToby Isaac bn = B->rmap->n; 2808faa55883SToby Isaac sendbuf = abt->buf[0]; 2809faa55883SToby Isaac recvbuf = abt->buf[1]; 2810faa55883SToby Isaac for (k = 0, j = 0; j < bn; j++) { 2811faa55883SToby Isaac for (i = 0; i < cK; i++, k++) { 2812637a0070SStefano Zampini sendbuf[k] = bv[i * blda + j]; 2813faa55883SToby Isaac } 2814faa55883SToby Isaac } 28159566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(b->A,&bv)); 28169566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgatherv(sendbuf, bn * cK, MPIU_SCALAR, recvbuf, abt->recvcounts, abt->recvdispls, MPIU_SCALAR, comm)); 28179566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(cK,&ck)); 28189566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(c->A->rmap->n,&cm)); 28199566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(c->A->cmap->n,&cn)); 282050ce3c9cSStefano Zampini if (cm && cn && ck) PetscStackCallBLAS("BLASgemm",BLASgemm_("N","N",&cm,&cn,&ck,&_DOne,av,&alda,recvbuf,&ck,&_DZero,cv,&clda)); 28219566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A,&av)); 28229566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(b->A,&bv)); 28239566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(c->A,&cv)); 28249566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY)); 28259566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY)); 2826faa55883SToby Isaac PetscFunctionReturn(0); 2827faa55883SToby Isaac } 2828faa55883SToby Isaac 2829faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat A, Mat B, Mat C) 2830faa55883SToby Isaac { 28316718818eSStefano Zampini Mat_MatTransMultDense *abt; 2832faa55883SToby Isaac 2833faa55883SToby Isaac PetscFunctionBegin; 28346718818eSStefano Zampini MatCheckProduct(C,3); 28355f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 28366718818eSStefano Zampini abt = (Mat_MatTransMultDense*)C->product->data; 2837faa55883SToby Isaac switch (abt->alg) { 2838faa55883SToby Isaac case 1: 28399566063dSJacob Faibussowitsch PetscCall(MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(A, B, C)); 2840faa55883SToby Isaac break; 2841faa55883SToby Isaac default: 28429566063dSJacob Faibussowitsch PetscCall(MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(A, B, C)); 2843faa55883SToby Isaac break; 2844faa55883SToby Isaac } 2845faa55883SToby Isaac PetscFunctionReturn(0); 2846faa55883SToby Isaac } 2847faa55883SToby Isaac 28486718818eSStefano Zampini PetscErrorCode MatDestroy_MatMatMult_MPIDense_MPIDense(void *data) 2849320f2790SHong Zhang { 28506718818eSStefano Zampini Mat_MatMultDense *ab = (Mat_MatMultDense*)data; 2851320f2790SHong Zhang 2852320f2790SHong Zhang PetscFunctionBegin; 28539566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ab->Ce)); 28549566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ab->Ae)); 28559566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ab->Be)); 28569566063dSJacob Faibussowitsch PetscCall(PetscFree(ab)); 2857320f2790SHong Zhang PetscFunctionReturn(0); 2858320f2790SHong Zhang } 2859320f2790SHong Zhang 28605242a7b1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 2861320f2790SHong Zhang PetscErrorCode MatMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 2862320f2790SHong Zhang { 28636718818eSStefano Zampini Mat_MatMultDense *ab; 2864320f2790SHong Zhang 2865320f2790SHong Zhang PetscFunctionBegin; 28666718818eSStefano Zampini MatCheckProduct(C,3); 28675f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Missing product data"); 28686718818eSStefano Zampini ab = (Mat_MatMultDense*)C->product->data; 28699566063dSJacob Faibussowitsch PetscCall(MatConvert_MPIDense_Elemental(A,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Ae)); 28709566063dSJacob Faibussowitsch PetscCall(MatConvert_MPIDense_Elemental(B,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Be)); 28719566063dSJacob Faibussowitsch PetscCall(MatMatMultNumeric_Elemental(ab->Ae,ab->Be,ab->Ce)); 28729566063dSJacob Faibussowitsch PetscCall(MatConvert(ab->Ce,MATMPIDENSE,MAT_REUSE_MATRIX,&C)); 2873320f2790SHong Zhang PetscFunctionReturn(0); 2874320f2790SHong Zhang } 2875320f2790SHong Zhang 28766718818eSStefano Zampini static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat C) 2877320f2790SHong Zhang { 2878320f2790SHong Zhang Mat Ae,Be,Ce; 2879320f2790SHong Zhang Mat_MatMultDense *ab; 2880320f2790SHong Zhang 2881320f2790SHong Zhang PetscFunctionBegin; 28826718818eSStefano Zampini MatCheckProduct(C,4); 28835f80ce2aSJacob Faibussowitsch PetscCheck(!C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty"); 28844222ddf1SHong Zhang /* check local size of A and B */ 2885320f2790SHong Zhang if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend) { 288698921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != B (%" PetscInt_FMT ",%" PetscInt_FMT ")",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 2887320f2790SHong Zhang } 2888320f2790SHong Zhang 28894222ddf1SHong Zhang /* create elemental matrices Ae and Be */ 28909566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &Ae)); 28919566063dSJacob Faibussowitsch PetscCall(MatSetSizes(Ae,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N)); 28929566063dSJacob Faibussowitsch PetscCall(MatSetType(Ae,MATELEMENTAL)); 28939566063dSJacob Faibussowitsch PetscCall(MatSetUp(Ae)); 28949566063dSJacob Faibussowitsch PetscCall(MatSetOption(Ae,MAT_ROW_ORIENTED,PETSC_FALSE)); 2895320f2790SHong Zhang 28969566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)B), &Be)); 28979566063dSJacob Faibussowitsch PetscCall(MatSetSizes(Be,PETSC_DECIDE,PETSC_DECIDE,B->rmap->N,B->cmap->N)); 28989566063dSJacob Faibussowitsch PetscCall(MatSetType(Be,MATELEMENTAL)); 28999566063dSJacob Faibussowitsch PetscCall(MatSetUp(Be)); 29009566063dSJacob Faibussowitsch PetscCall(MatSetOption(Be,MAT_ROW_ORIENTED,PETSC_FALSE)); 2901320f2790SHong Zhang 29024222ddf1SHong Zhang /* compute symbolic Ce = Ae*Be */ 29039566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)C),&Ce)); 29049566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_Elemental(Ae,Be,fill,Ce)); 29054222ddf1SHong Zhang 29064222ddf1SHong Zhang /* setup C */ 29079566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C,A->rmap->n,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE)); 29089566063dSJacob Faibussowitsch PetscCall(MatSetType(C,MATDENSE)); 29099566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 2910320f2790SHong Zhang 2911320f2790SHong Zhang /* create data structure for reuse Cdense */ 29129566063dSJacob Faibussowitsch PetscCall(PetscNew(&ab)); 2913320f2790SHong Zhang ab->Ae = Ae; 2914320f2790SHong Zhang ab->Be = Be; 2915320f2790SHong Zhang ab->Ce = Ce; 29166718818eSStefano Zampini 29176718818eSStefano Zampini C->product->data = ab; 29186718818eSStefano Zampini C->product->destroy = MatDestroy_MatMatMult_MPIDense_MPIDense; 29194222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIDense; 2920320f2790SHong Zhang PetscFunctionReturn(0); 2921320f2790SHong Zhang } 29224222ddf1SHong Zhang #endif 29234222ddf1SHong Zhang /* ----------------------------------------------- */ 29244222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 29254222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_AB(Mat C) 2926320f2790SHong Zhang { 2927320f2790SHong Zhang PetscFunctionBegin; 29284222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIDense; 29294222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 2930320f2790SHong Zhang PetscFunctionReturn(0); 2931320f2790SHong Zhang } 29325242a7b1SHong Zhang #endif 293386aefd0dSHong Zhang 29344222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_AtB(Mat C) 29354222ddf1SHong Zhang { 29364222ddf1SHong Zhang Mat_Product *product = C->product; 29374222ddf1SHong Zhang Mat A = product->A,B=product->B; 29384222ddf1SHong Zhang 29394222ddf1SHong Zhang PetscFunctionBegin; 29404222ddf1SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) 294198921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 29426718818eSStefano Zampini C->ops->transposematmultsymbolic = MatTransposeMatMultSymbolic_MPIDense_MPIDense; 29436718818eSStefano Zampini C->ops->productsymbolic = MatProductSymbolic_AtB; 29444222ddf1SHong Zhang PetscFunctionReturn(0); 29454222ddf1SHong Zhang } 29464222ddf1SHong Zhang 29474222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_ABt(Mat C) 29484222ddf1SHong Zhang { 29494222ddf1SHong Zhang Mat_Product *product = C->product; 29504222ddf1SHong Zhang const char *algTypes[2] = {"allgatherv","cyclic"}; 29514222ddf1SHong Zhang PetscInt alg,nalg = 2; 29524222ddf1SHong Zhang PetscBool flg = PETSC_FALSE; 29534222ddf1SHong Zhang 29544222ddf1SHong Zhang PetscFunctionBegin; 29554222ddf1SHong Zhang /* Set default algorithm */ 29564222ddf1SHong Zhang alg = 0; /* default is allgatherv */ 29579566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg,"default",&flg)); 29584222ddf1SHong Zhang if (flg) { 29599566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg])); 29604222ddf1SHong Zhang } 29614222ddf1SHong Zhang 29624222ddf1SHong Zhang /* Get runtime option */ 29634222ddf1SHong Zhang if (product->api_user) { 2964d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatMatTransposeMult","Mat"); 29659566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-matmattransmult_mpidense_mpidense_via","Algorithmic approach","MatMatTransposeMult",algTypes,nalg,algTypes[alg],&alg,&flg)); 2966d0609cedSBarry Smith PetscOptionsEnd(); 29674222ddf1SHong Zhang } else { 2968d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatProduct_ABt","Mat"); 29699566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm","Algorithmic approach","MatProduct_ABt",algTypes,nalg,algTypes[alg],&alg,&flg)); 2970d0609cedSBarry Smith PetscOptionsEnd(); 29714222ddf1SHong Zhang } 29724222ddf1SHong Zhang if (flg) { 29739566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg])); 29744222ddf1SHong Zhang } 29754222ddf1SHong Zhang 29764222ddf1SHong Zhang C->ops->mattransposemultsymbolic = MatMatTransposeMultSymbolic_MPIDense_MPIDense; 29774222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_ABt; 29784222ddf1SHong Zhang PetscFunctionReturn(0); 29794222ddf1SHong Zhang } 29804222ddf1SHong Zhang 29814222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense(Mat C) 29824222ddf1SHong Zhang { 29834222ddf1SHong Zhang Mat_Product *product = C->product; 29844222ddf1SHong Zhang 29854222ddf1SHong Zhang PetscFunctionBegin; 29864222ddf1SHong Zhang switch (product->type) { 29874222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 29884222ddf1SHong Zhang case MATPRODUCT_AB: 29899566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIDense_AB(C)); 29904222ddf1SHong Zhang break; 29914222ddf1SHong Zhang #endif 29924222ddf1SHong Zhang case MATPRODUCT_AtB: 29939566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIDense_AtB(C)); 29944222ddf1SHong Zhang break; 29954222ddf1SHong Zhang case MATPRODUCT_ABt: 29969566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIDense_ABt(C)); 29974222ddf1SHong Zhang break; 29986718818eSStefano Zampini default: 29996718818eSStefano Zampini break; 30004222ddf1SHong Zhang } 30014222ddf1SHong Zhang PetscFunctionReturn(0); 30024222ddf1SHong Zhang } 3003