1be1d678aSKris Buschelman 2ed3cc1f0SBarry Smith /* 3ed3cc1f0SBarry Smith Basic functions for basic parallel dense matrices. 447d993e7Ssuyashtn Portions of this code are under: 547d993e7Ssuyashtn Copyright (c) 2022 Advanced Micro Devices, Inc. All rights reserved. 6ed3cc1f0SBarry Smith */ 7ed3cc1f0SBarry Smith 8c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h> /*I "petscmat.h" I*/ 98949adfdSHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 10baa3c1c6SHong Zhang #include <petscblaslapack.h> 118965ea79SLois Curfman McInnes 12ab92ecdeSBarry Smith /*@ 1311a5261eSBarry Smith MatDenseGetLocalMatrix - For a `MATMPIDENSE` or `MATSEQDENSE` matrix returns the sequential 14ab92ecdeSBarry Smith matrix that represents the operator. For sequential matrices it returns itself. 15ab92ecdeSBarry Smith 16ab92ecdeSBarry Smith Input Parameter: 172ef1f0ffSBarry Smith . A - the sequential or MPI `MATDENSE` matrix 18ab92ecdeSBarry Smith 19ab92ecdeSBarry Smith Output Parameter: 20ab92ecdeSBarry Smith . B - the inner matrix 21ab92ecdeSBarry Smith 228e6c10adSSatish Balay Level: intermediate 238e6c10adSSatish Balay 24*1cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MATMPIDENSE`, `MATSEQDENSE` 25ab92ecdeSBarry Smith @*/ 26d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetLocalMatrix(Mat A, Mat *B) 27d71ae5a4SJacob Faibussowitsch { 28ab92ecdeSBarry Smith Mat_MPIDense *mat = (Mat_MPIDense *)A->data; 29ace3abfcSBarry Smith PetscBool flg; 30ab92ecdeSBarry Smith 31ab92ecdeSBarry Smith PetscFunctionBegin; 32d5ea218eSStefano Zampini PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 33d5ea218eSStefano Zampini PetscValidPointer(B, 2); 349566063dSJacob Faibussowitsch PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIDENSE, &flg)); 352205254eSKarl Rupp if (flg) *B = mat->A; 36f140bc17SStefano Zampini else { 379566063dSJacob Faibussowitsch PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATSEQDENSE, &flg)); 3828b400f6SJacob Faibussowitsch PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not for matrix type %s", ((PetscObject)A)->type_name); 39f140bc17SStefano Zampini *B = A; 40f140bc17SStefano Zampini } 413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42ab92ecdeSBarry Smith } 43ab92ecdeSBarry Smith 44d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCopy_MPIDense(Mat A, Mat B, MatStructure s) 45d71ae5a4SJacob Faibussowitsch { 46a76f77c3SStefano Zampini Mat_MPIDense *Amat = (Mat_MPIDense *)A->data; 47a76f77c3SStefano Zampini Mat_MPIDense *Bmat = (Mat_MPIDense *)B->data; 48a76f77c3SStefano Zampini 49a76f77c3SStefano Zampini PetscFunctionBegin; 509566063dSJacob Faibussowitsch PetscCall(MatCopy(Amat->A, Bmat->A, s)); 513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 52a76f77c3SStefano Zampini } 53a76f77c3SStefano Zampini 54d71ae5a4SJacob Faibussowitsch PetscErrorCode MatShift_MPIDense(Mat A, PetscScalar alpha) 55d71ae5a4SJacob Faibussowitsch { 562f605a99SJose E. Roman Mat_MPIDense *mat = (Mat_MPIDense *)A->data; 572f605a99SJose E. Roman PetscInt j, lda, rstart = A->rmap->rstart, rend = A->rmap->rend, rend2; 582f605a99SJose E. Roman PetscScalar *v; 592f605a99SJose E. Roman 602f605a99SJose E. Roman PetscFunctionBegin; 612f605a99SJose E. Roman PetscCall(MatDenseGetArray(mat->A, &v)); 622f605a99SJose E. Roman PetscCall(MatDenseGetLDA(mat->A, &lda)); 632f605a99SJose E. Roman rend2 = PetscMin(rend, A->cmap->N); 642f605a99SJose E. Roman if (rend2 > rstart) { 652f605a99SJose E. Roman for (j = rstart; j < rend2; j++) v[j - rstart + j * lda] += alpha; 662f605a99SJose E. Roman PetscCall(PetscLogFlops(rend2 - rstart)); 672f605a99SJose E. Roman } 682f605a99SJose E. Roman PetscCall(MatDenseRestoreArray(mat->A, &v)); 693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 702f605a99SJose E. Roman } 712f605a99SJose E. Roman 72d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIDense(Mat A, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 73d71ae5a4SJacob Faibussowitsch { 74ba8c8a56SBarry Smith Mat_MPIDense *mat = (Mat_MPIDense *)A->data; 75d0f46423SBarry Smith PetscInt lrow, rstart = A->rmap->rstart, rend = A->rmap->rend; 76ba8c8a56SBarry Smith 77ba8c8a56SBarry Smith PetscFunctionBegin; 78aed4548fSBarry Smith PetscCheck(row >= rstart && row < rend, PETSC_COMM_SELF, PETSC_ERR_SUP, "only local rows"); 79ba8c8a56SBarry Smith lrow = row - rstart; 809566063dSJacob Faibussowitsch PetscCall(MatGetRow(mat->A, lrow, nz, (const PetscInt **)idx, (const PetscScalar **)v)); 813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 82ba8c8a56SBarry Smith } 83ba8c8a56SBarry Smith 84d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIDense(Mat A, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 85d71ae5a4SJacob Faibussowitsch { 86637a0070SStefano Zampini Mat_MPIDense *mat = (Mat_MPIDense *)A->data; 87637a0070SStefano Zampini PetscInt lrow, rstart = A->rmap->rstart, rend = A->rmap->rend; 88ba8c8a56SBarry Smith 89ba8c8a56SBarry Smith PetscFunctionBegin; 90aed4548fSBarry Smith PetscCheck(row >= rstart && row < rend, PETSC_COMM_SELF, PETSC_ERR_SUP, "only local rows"); 91637a0070SStefano Zampini lrow = row - rstart; 929566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(mat->A, lrow, nz, (const PetscInt **)idx, (const PetscScalar **)v)); 933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 94ba8c8a56SBarry Smith } 95ba8c8a56SBarry Smith 96d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetDiagonalBlock_MPIDense(Mat A, Mat *a) 97d71ae5a4SJacob Faibussowitsch { 980de54da6SSatish Balay Mat_MPIDense *mdn = (Mat_MPIDense *)A->data; 99d0f46423SBarry Smith PetscInt m = A->rmap->n, rstart = A->rmap->rstart; 10087828ca2SBarry Smith PetscScalar *array; 1010de54da6SSatish Balay MPI_Comm comm; 1024b6ae80fSStefano Zampini PetscBool flg; 10311bd1e4dSLisandro Dalcin Mat B; 1040de54da6SSatish Balay 1050de54da6SSatish Balay PetscFunctionBegin; 1069566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &flg)); 10728b400f6SJacob Faibussowitsch PetscCheck(flg, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only square matrices supported."); 1089566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)A, "DiagonalBlock", (PetscObject *)&B)); 109616b8fbbSStefano Zampini if (!B) { /* This should use MatDenseGetSubMatrix (not create), but we would need a call like MatRestoreDiagonalBlock */ 110a51cd166SPierre Jolivet #if PetscDefined(HAVE_CUDA) 1119566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)mdn->A, MATSEQDENSECUDA, &flg)); 11228b400f6SJacob Faibussowitsch PetscCheck(!flg, PETSC_COMM_SELF, PETSC_ERR_SUP, "Not coded for %s. Send an email to petsc-dev@mcs.anl.gov to request this feature", MATSEQDENSECUDA); 113a51cd166SPierre Jolivet #elif PetscDefined(HAVE_HIP) 11447d993e7Ssuyashtn PetscCall(PetscObjectTypeCompare((PetscObject)mdn->A, MATSEQDENSEHIP, &flg)); 11547d993e7Ssuyashtn PetscCheck(!flg, PETSC_COMM_SELF, PETSC_ERR_SUP, "Not coded for %s. Send an email to petsc-dev@mcs.anl.gov to request this feature", MATSEQDENSEHIP); 11647d993e7Ssuyashtn #endif 1179566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)(mdn->A), &comm)); 1189566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &B)); 1199566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, m, m, m, m)); 1209566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)mdn->A)->type_name)); 1219566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(mdn->A, (const PetscScalar **)&array)); 1229566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(B, array + m * rstart)); 1239566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(mdn->A, (const PetscScalar **)&array)); 1249566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)A, "DiagonalBlock", (PetscObject)B)); 12511bd1e4dSLisandro Dalcin *a = B; 1269566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 1272205254eSKarl Rupp } else *a = B; 1283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1290de54da6SSatish Balay } 1300de54da6SSatish Balay 131d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIDense(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], const PetscScalar v[], InsertMode addv) 132d71ae5a4SJacob Faibussowitsch { 13339b7565bSBarry Smith Mat_MPIDense *A = (Mat_MPIDense *)mat->data; 134d0f46423SBarry Smith PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend, row; 135ace3abfcSBarry Smith PetscBool roworiented = A->roworiented; 1368965ea79SLois Curfman McInnes 1373a40ed3dSBarry Smith PetscFunctionBegin; 1388965ea79SLois Curfman McInnes for (i = 0; i < m; i++) { 1395ef9f2a5SBarry Smith if (idxm[i] < 0) continue; 14008401ef6SPierre Jolivet PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large"); 1418965ea79SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 1428965ea79SLois Curfman McInnes row = idxm[i] - rstart; 14339b7565bSBarry Smith if (roworiented) { 1449566063dSJacob Faibussowitsch PetscCall(MatSetValues(A->A, 1, &row, n, idxn, v + i * n, addv)); 1453a40ed3dSBarry Smith } else { 1468965ea79SLois Curfman McInnes for (j = 0; j < n; j++) { 1475ef9f2a5SBarry Smith if (idxn[j] < 0) continue; 14808401ef6SPierre Jolivet PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large"); 1499566063dSJacob Faibussowitsch PetscCall(MatSetValues(A->A, 1, &row, 1, &idxn[j], v + i + j * m, addv)); 15039b7565bSBarry Smith } 1518965ea79SLois Curfman McInnes } 1522205254eSKarl Rupp } else if (!A->donotstash) { 1535080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 15439b7565bSBarry Smith if (roworiented) { 1559566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, idxm[i], n, idxn, v + i * n, PETSC_FALSE)); 156d36fbae8SSatish Balay } else { 1579566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, idxm[i], n, idxn, v + i, m, PETSC_FALSE)); 15839b7565bSBarry Smith } 159b49de8d1SLois Curfman McInnes } 160b49de8d1SLois Curfman McInnes } 1613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 162b49de8d1SLois Curfman McInnes } 163b49de8d1SLois Curfman McInnes 164d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetValues_MPIDense(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 165d71ae5a4SJacob Faibussowitsch { 166b49de8d1SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 167d0f46423SBarry Smith PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend, row; 168b49de8d1SLois Curfman McInnes 1693a40ed3dSBarry Smith PetscFunctionBegin; 170b49de8d1SLois Curfman McInnes for (i = 0; i < m; i++) { 17154c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 17254c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large"); 173b49de8d1SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 174b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 175b49de8d1SLois Curfman McInnes for (j = 0; j < n; j++) { 17654c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 17754c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large"); 1789566063dSJacob Faibussowitsch PetscCall(MatGetValues(mdn->A, 1, &row, 1, &idxn[j], v + i * n + j)); 179b49de8d1SLois Curfman McInnes } 180e7e72b3dSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported"); 1818965ea79SLois Curfman McInnes } 1823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1838965ea79SLois Curfman McInnes } 1848965ea79SLois Curfman McInnes 185d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseGetLDA_MPIDense(Mat A, PetscInt *lda) 186d71ae5a4SJacob Faibussowitsch { 18749a6ff4bSBarry Smith Mat_MPIDense *a = (Mat_MPIDense *)A->data; 18849a6ff4bSBarry Smith 18949a6ff4bSBarry Smith PetscFunctionBegin; 1909566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, lda)); 1913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 19249a6ff4bSBarry Smith } 19349a6ff4bSBarry Smith 194d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseSetLDA_MPIDense(Mat A, PetscInt lda) 195d71ae5a4SJacob Faibussowitsch { 196ad16ce7aSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 19747d993e7Ssuyashtn MatType mtype = MATSEQDENSE; 198ad16ce7aSStefano Zampini 199ad16ce7aSStefano Zampini PetscFunctionBegin; 20017359960SJose E. Roman if (!a->A) { 20128b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 2029566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->rmap)); 2039566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->cmap)); 2049566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &a->A)); 2059566063dSJacob Faibussowitsch PetscCall(MatSetSizes(a->A, A->rmap->n, A->cmap->N, A->rmap->n, A->cmap->N)); 206a51cd166SPierre Jolivet #if PetscDefined(HAVE_CUDA) 20747d993e7Ssuyashtn PetscBool iscuda; 2089566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIDENSECUDA, &iscuda)); 20947d993e7Ssuyashtn if (iscuda) mtype = MATSEQDENSECUDA; 210a51cd166SPierre Jolivet #elif PetscDefined(HAVE_HIP) 21147d993e7Ssuyashtn PetscBool iship; 21247d993e7Ssuyashtn PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIDENSEHIP, &iship)); 21347d993e7Ssuyashtn if (iship) mtype = MATSEQDENSEHIP; 21447d993e7Ssuyashtn #endif 21547d993e7Ssuyashtn PetscCall(MatSetType(a->A, mtype)); 21617359960SJose E. Roman } 2179566063dSJacob Faibussowitsch PetscCall(MatDenseSetLDA(a->A, lda)); 2183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 219ad16ce7aSStefano Zampini } 220ad16ce7aSStefano Zampini 221d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseGetArray_MPIDense(Mat A, PetscScalar **array) 222d71ae5a4SJacob Faibussowitsch { 223ff14e315SSatish Balay Mat_MPIDense *a = (Mat_MPIDense *)A->data; 224ff14e315SSatish Balay 2253a40ed3dSBarry Smith PetscFunctionBegin; 22628b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 2279566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(a->A, array)); 2283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 229ff14e315SSatish Balay } 230ff14e315SSatish Balay 231d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseGetArrayRead_MPIDense(Mat A, const PetscScalar **array) 232d71ae5a4SJacob Faibussowitsch { 2338572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense *)A->data; 2348572280aSBarry Smith 2358572280aSBarry Smith PetscFunctionBegin; 23628b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 2379566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A, array)); 2383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2398572280aSBarry Smith } 2408572280aSBarry Smith 241d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseGetArrayWrite_MPIDense(Mat A, PetscScalar **array) 242d71ae5a4SJacob Faibussowitsch { 2436947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 2446947451fSStefano Zampini 2456947451fSStefano Zampini PetscFunctionBegin; 24628b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 2479566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(a->A, array)); 2483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2496947451fSStefano Zampini } 2506947451fSStefano Zampini 251d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDensePlaceArray_MPIDense(Mat A, const PetscScalar *array) 252d71ae5a4SJacob Faibussowitsch { 253d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense *)A->data; 254d3042a70SBarry Smith 255d3042a70SBarry Smith PetscFunctionBegin; 25628b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 25728b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 2589566063dSJacob Faibussowitsch PetscCall(MatDensePlaceArray(a->A, array)); 2593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 260d3042a70SBarry Smith } 261d3042a70SBarry Smith 262d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseResetArray_MPIDense(Mat A) 263d71ae5a4SJacob Faibussowitsch { 264d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense *)A->data; 265d3042a70SBarry Smith 266d3042a70SBarry Smith PetscFunctionBegin; 26728b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 26828b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 2699566063dSJacob Faibussowitsch PetscCall(MatDenseResetArray(a->A)); 2703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 271d3042a70SBarry Smith } 272d3042a70SBarry Smith 273d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseReplaceArray_MPIDense(Mat A, const PetscScalar *array) 274d71ae5a4SJacob Faibussowitsch { 275d5ea218eSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 276d5ea218eSStefano Zampini 277d5ea218eSStefano Zampini PetscFunctionBegin; 27828b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 27928b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 2809566063dSJacob Faibussowitsch PetscCall(MatDenseReplaceArray(a->A, array)); 2813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 282d5ea218eSStefano Zampini } 283d5ea218eSStefano Zampini 284d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrix_MPIDense(Mat A, IS isrow, IS iscol, MatReuse scall, Mat *B) 285d71ae5a4SJacob Faibussowitsch { 286ca3fa75bSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense *)A->data, *newmatd; 287637a0070SStefano Zampini PetscInt lda, i, j, rstart, rend, nrows, ncols, Ncols, nlrows, nlcols; 2885d0c19d7SBarry Smith const PetscInt *irow, *icol; 289637a0070SStefano Zampini const PetscScalar *v; 290637a0070SStefano Zampini PetscScalar *bv; 291ca3fa75bSLois Curfman McInnes Mat newmat; 2924aa3045dSJed Brown IS iscol_local; 29342a884f0SBarry Smith MPI_Comm comm_is, comm_mat; 294ca3fa75bSLois Curfman McInnes 295ca3fa75bSLois Curfman McInnes PetscFunctionBegin; 2969566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm_mat)); 2979566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)iscol, &comm_is)); 29808401ef6SPierre Jolivet PetscCheck(comm_mat == comm_is, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "IS communicator must match matrix communicator"); 29942a884f0SBarry Smith 3009566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol, &iscol_local)); 3019566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isrow, &irow)); 3029566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_local, &icol)); 3039566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &nrows)); 3049566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &ncols)); 3059566063dSJacob Faibussowitsch PetscCall(ISGetSize(iscol, &Ncols)); /* global number of columns, size of iscol_local */ 306ca3fa75bSLois Curfman McInnes 307ca3fa75bSLois Curfman McInnes /* No parallel redistribution currently supported! Should really check each index set 308da81f932SPierre Jolivet to confirm that it is OK. ... Currently supports only submatrix same partitioning as 3097eba5e9cSLois Curfman McInnes original matrix! */ 310ca3fa75bSLois Curfman McInnes 3119566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, &nlrows, &nlcols)); 3129566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, &rend)); 313ca3fa75bSLois Curfman McInnes 314ca3fa75bSLois Curfman McInnes /* Check submatrix call */ 315ca3fa75bSLois Curfman McInnes if (scall == MAT_REUSE_MATRIX) { 316e32f2f54SBarry Smith /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */ 3177eba5e9cSLois Curfman McInnes /* Really need to test rows and column sizes! */ 318ca3fa75bSLois Curfman McInnes newmat = *B; 319ca3fa75bSLois Curfman McInnes } else { 320ca3fa75bSLois Curfman McInnes /* Create and fill new matrix */ 3219566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &newmat)); 3229566063dSJacob Faibussowitsch PetscCall(MatSetSizes(newmat, nrows, ncols, PETSC_DECIDE, Ncols)); 3239566063dSJacob Faibussowitsch PetscCall(MatSetType(newmat, ((PetscObject)A)->type_name)); 3249566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(newmat, NULL)); 325ca3fa75bSLois Curfman McInnes } 326ca3fa75bSLois Curfman McInnes 327ca3fa75bSLois Curfman McInnes /* Now extract the data pointers and do the copy, column at a time */ 328ca3fa75bSLois Curfman McInnes newmatd = (Mat_MPIDense *)newmat->data; 3299566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(newmatd->A, &bv)); 3309566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(mat->A, &v)); 3319566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(mat->A, &lda)); 3324aa3045dSJed Brown for (i = 0; i < Ncols; i++) { 333637a0070SStefano Zampini const PetscScalar *av = v + lda * icol[i]; 334ad540459SPierre Jolivet for (j = 0; j < nrows; j++) *bv++ = av[irow[j] - rstart]; 335ca3fa75bSLois Curfman McInnes } 3369566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(mat->A, &v)); 3379566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(newmatd->A, &bv)); 338ca3fa75bSLois Curfman McInnes 339ca3fa75bSLois Curfman McInnes /* Assemble the matrices so that the correct flags are set */ 3409566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(newmat, MAT_FINAL_ASSEMBLY)); 3419566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(newmat, MAT_FINAL_ASSEMBLY)); 342ca3fa75bSLois Curfman McInnes 343ca3fa75bSLois Curfman McInnes /* Free work space */ 3449566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isrow, &irow)); 3459566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_local, &icol)); 3469566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 347ca3fa75bSLois Curfman McInnes *B = newmat; 3483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 349ca3fa75bSLois Curfman McInnes } 350ca3fa75bSLois Curfman McInnes 351d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreArray_MPIDense(Mat A, PetscScalar **array) 352d71ae5a4SJacob Faibussowitsch { 35373a71a0fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense *)A->data; 35473a71a0fSBarry Smith 3553a40ed3dSBarry Smith PetscFunctionBegin; 3569566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(a->A, array)); 3573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 358ff14e315SSatish Balay } 359ff14e315SSatish Balay 360d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreArrayRead_MPIDense(Mat A, const PetscScalar **array) 361d71ae5a4SJacob Faibussowitsch { 3628572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense *)A->data; 3638572280aSBarry Smith 3648572280aSBarry Smith PetscFunctionBegin; 3659566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A, array)); 3663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3678572280aSBarry Smith } 3688572280aSBarry Smith 369d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreArrayWrite_MPIDense(Mat A, PetscScalar **array) 370d71ae5a4SJacob Faibussowitsch { 3716947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 3726947451fSStefano Zampini 3736947451fSStefano Zampini PetscFunctionBegin; 3749566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(a->A, array)); 3753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3766947451fSStefano Zampini } 3776947451fSStefano Zampini 378d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat, MatAssemblyType mode) 379d71ae5a4SJacob Faibussowitsch { 38039ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 38113f74950SBarry Smith PetscInt nstash, reallocs; 3828965ea79SLois Curfman McInnes 3833a40ed3dSBarry Smith PetscFunctionBegin; 3843ba16761SJacob Faibussowitsch if (mdn->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS); 3858965ea79SLois Curfman McInnes 3869566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 3879566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 3889566063dSJacob Faibussowitsch PetscCall(PetscInfo(mdn->A, "Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 3893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3908965ea79SLois Curfman McInnes } 3918965ea79SLois Curfman McInnes 392d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat, MatAssemblyType mode) 393d71ae5a4SJacob Faibussowitsch { 39439ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 39513f74950SBarry Smith PetscInt i, *row, *col, flg, j, rstart, ncols; 39613f74950SBarry Smith PetscMPIInt n; 39787828ca2SBarry Smith PetscScalar *val; 3988965ea79SLois Curfman McInnes 3993a40ed3dSBarry Smith PetscFunctionBegin; 400910cf402Sprj- if (!mdn->donotstash && !mat->nooffprocentries) { 4018965ea79SLois Curfman McInnes /* wait on receives */ 4027ef1d9bdSSatish Balay while (1) { 4039566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 4047ef1d9bdSSatish Balay if (!flg) break; 4058965ea79SLois Curfman McInnes 4067ef1d9bdSSatish Balay for (i = 0; i < n;) { 4077ef1d9bdSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 4082205254eSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 4092205254eSKarl Rupp if (row[j] != rstart) break; 4102205254eSKarl Rupp } 4117ef1d9bdSSatish Balay if (j < n) ncols = j - i; 4127ef1d9bdSSatish Balay else ncols = n - i; 4137ef1d9bdSSatish Balay /* Now assemble all these values with a single function call */ 4149566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIDense(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode)); 4157ef1d9bdSSatish Balay i = j; 4168965ea79SLois Curfman McInnes } 4177ef1d9bdSSatish Balay } 4189566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 419910cf402Sprj- } 4208965ea79SLois Curfman McInnes 4219566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mdn->A, mode)); 4229566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mdn->A, mode)); 4233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4248965ea79SLois Curfman McInnes } 4258965ea79SLois Curfman McInnes 426d71ae5a4SJacob Faibussowitsch PetscErrorCode MatZeroEntries_MPIDense(Mat A) 427d71ae5a4SJacob Faibussowitsch { 42839ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense *)A->data; 4293a40ed3dSBarry Smith 4303a40ed3dSBarry Smith PetscFunctionBegin; 4319566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 4323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4338965ea79SLois Curfman McInnes } 4348965ea79SLois Curfman McInnes 435d71ae5a4SJacob Faibussowitsch PetscErrorCode MatZeroRows_MPIDense(Mat A, PetscInt n, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 436d71ae5a4SJacob Faibussowitsch { 43739ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense *)A->data; 438637a0070SStefano Zampini PetscInt i, len, *lrows; 439637a0070SStefano Zampini 440637a0070SStefano Zampini PetscFunctionBegin; 441637a0070SStefano Zampini /* get locally owned rows */ 4429566063dSJacob Faibussowitsch PetscCall(PetscLayoutMapLocal(A->rmap, n, rows, &len, &lrows, NULL)); 443637a0070SStefano Zampini /* fix right hand side if needed */ 444637a0070SStefano Zampini if (x && b) { 44597b48c8fSBarry Smith const PetscScalar *xx; 44697b48c8fSBarry Smith PetscScalar *bb; 4478965ea79SLois Curfman McInnes 4489566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 4499566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(b, &bb)); 450637a0070SStefano Zampini for (i = 0; i < len; ++i) bb[lrows[i]] = diag * xx[lrows[i]]; 4519566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 4529566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(b, &bb)); 45397b48c8fSBarry Smith } 4549566063dSJacob Faibussowitsch PetscCall(MatZeroRows(l->A, len, lrows, 0.0, NULL, NULL)); 455e2eb51b1SBarry Smith if (diag != 0.0) { 456637a0070SStefano Zampini Vec d; 457b9679d65SBarry Smith 4589566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(A, NULL, &d)); 4599566063dSJacob Faibussowitsch PetscCall(VecSet(d, diag)); 4609566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet(A, d, INSERT_VALUES)); 4619566063dSJacob Faibussowitsch PetscCall(VecDestroy(&d)); 462b9679d65SBarry Smith } 4639566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 4643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4658965ea79SLois Curfman McInnes } 4668965ea79SLois Curfman McInnes 467cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMult_SeqDense(Mat, Vec, Vec); 468cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultAdd_SeqDense(Mat, Vec, Vec, Vec); 469cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTranspose_SeqDense(Mat, Vec, Vec); 470cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTransposeAdd_SeqDense(Mat, Vec, Vec, Vec); 471cc2e6a90SBarry Smith 472d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMult_MPIDense(Mat mat, Vec xx, Vec yy) 473d71ae5a4SJacob Faibussowitsch { 47439ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 475637a0070SStefano Zampini const PetscScalar *ax; 476637a0070SStefano Zampini PetscScalar *ay; 477d0295fc0SJunchao Zhang PetscMemType axmtype, aymtype; 478c456f294SBarry Smith 4793a40ed3dSBarry Smith PetscFunctionBegin; 4806f08ad05SPierre Jolivet if (!mdn->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(mat)); 4819566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(xx, &ax, &axmtype)); 4829566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(mdn->lvec, &ay, &aymtype)); 4839566063dSJacob Faibussowitsch PetscCall(PetscSFBcastWithMemTypeBegin(mdn->Mvctx, MPIU_SCALAR, axmtype, ax, aymtype, ay, MPI_REPLACE)); 4849566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(mdn->Mvctx, MPIU_SCALAR, ax, ay, MPI_REPLACE)); 4859566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(mdn->lvec, &ay)); 4869566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(xx, &ax)); 4879566063dSJacob Faibussowitsch PetscCall((*mdn->A->ops->mult)(mdn->A, mdn->lvec, yy)); 4883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4898965ea79SLois Curfman McInnes } 4908965ea79SLois Curfman McInnes 491d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultAdd_MPIDense(Mat mat, Vec xx, Vec yy, Vec zz) 492d71ae5a4SJacob Faibussowitsch { 49339ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 494637a0070SStefano Zampini const PetscScalar *ax; 495637a0070SStefano Zampini PetscScalar *ay; 496d0295fc0SJunchao Zhang PetscMemType axmtype, aymtype; 497c456f294SBarry Smith 4983a40ed3dSBarry Smith PetscFunctionBegin; 4996f08ad05SPierre Jolivet if (!mdn->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(mat)); 5009566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(xx, &ax, &axmtype)); 5019566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(mdn->lvec, &ay, &aymtype)); 5029566063dSJacob Faibussowitsch PetscCall(PetscSFBcastWithMemTypeBegin(mdn->Mvctx, MPIU_SCALAR, axmtype, ax, aymtype, ay, MPI_REPLACE)); 5039566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(mdn->Mvctx, MPIU_SCALAR, ax, ay, MPI_REPLACE)); 5049566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(mdn->lvec, &ay)); 5059566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(xx, &ax)); 5069566063dSJacob Faibussowitsch PetscCall((*mdn->A->ops->multadd)(mdn->A, mdn->lvec, yy, zz)); 5073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5088965ea79SLois Curfman McInnes } 5098965ea79SLois Curfman McInnes 510d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultTranspose_MPIDense(Mat A, Vec xx, Vec yy) 511d71ae5a4SJacob Faibussowitsch { 512096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense *)A->data; 513637a0070SStefano Zampini const PetscScalar *ax; 514637a0070SStefano Zampini PetscScalar *ay; 515d0295fc0SJunchao Zhang PetscMemType axmtype, aymtype; 516096963f5SLois Curfman McInnes 5173a40ed3dSBarry Smith PetscFunctionBegin; 5186f08ad05SPierre Jolivet if (!a->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); 5199566063dSJacob Faibussowitsch PetscCall(VecSet(yy, 0.0)); 5209566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A, xx, a->lvec)); 5219566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(a->lvec, &ax, &axmtype)); 5229566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(yy, &ay, &aymtype)); 5239566063dSJacob Faibussowitsch PetscCall(PetscSFReduceWithMemTypeBegin(a->Mvctx, MPIU_SCALAR, axmtype, ax, aymtype, ay, MPIU_SUM)); 5249566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(a->Mvctx, MPIU_SCALAR, ax, ay, MPIU_SUM)); 5259566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(a->lvec, &ax)); 5269566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(yy, &ay)); 5273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 528096963f5SLois Curfman McInnes } 529096963f5SLois Curfman McInnes 530d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A, Vec xx, Vec yy, Vec zz) 531d71ae5a4SJacob Faibussowitsch { 532096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense *)A->data; 533637a0070SStefano Zampini const PetscScalar *ax; 534637a0070SStefano Zampini PetscScalar *ay; 535d0295fc0SJunchao Zhang PetscMemType axmtype, aymtype; 536096963f5SLois Curfman McInnes 5373a40ed3dSBarry Smith PetscFunctionBegin; 5386f08ad05SPierre Jolivet if (!a->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); 5399566063dSJacob Faibussowitsch PetscCall(VecCopy(yy, zz)); 5409566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A, xx, a->lvec)); 5419566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(a->lvec, &ax, &axmtype)); 5429566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(zz, &ay, &aymtype)); 5439566063dSJacob Faibussowitsch PetscCall(PetscSFReduceWithMemTypeBegin(a->Mvctx, MPIU_SCALAR, axmtype, ax, aymtype, ay, MPIU_SUM)); 5449566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(a->Mvctx, MPIU_SCALAR, ax, ay, MPIU_SUM)); 5459566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(a->lvec, &ax)); 5469566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(zz, &ay)); 5473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 548096963f5SLois Curfman McInnes } 549096963f5SLois Curfman McInnes 550d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetDiagonal_MPIDense(Mat A, Vec v) 551d71ae5a4SJacob Faibussowitsch { 55239ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense *)A->data; 553637a0070SStefano Zampini PetscInt lda, len, i, n, m = A->rmap->n, radd; 55487828ca2SBarry Smith PetscScalar *x, zero = 0.0; 555637a0070SStefano Zampini const PetscScalar *av; 556ed3cc1f0SBarry Smith 5573a40ed3dSBarry Smith PetscFunctionBegin; 5589566063dSJacob Faibussowitsch PetscCall(VecSet(v, zero)); 5599566063dSJacob Faibussowitsch PetscCall(VecGetArray(v, &x)); 5609566063dSJacob Faibussowitsch PetscCall(VecGetSize(v, &n)); 56108401ef6SPierre Jolivet PetscCheck(n == A->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Nonconforming mat and vec"); 562d0f46423SBarry Smith len = PetscMin(a->A->rmap->n, a->A->cmap->n); 563d0f46423SBarry Smith radd = A->rmap->rstart * m; 5649566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A, &av)); 5659566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &lda)); 566ad540459SPierre Jolivet for (i = 0; i < len; i++) x[i] = av[radd + i * lda + i]; 5679566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A, &av)); 5689566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v, &x)); 5693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5708965ea79SLois Curfman McInnes } 5718965ea79SLois Curfman McInnes 572d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDestroy_MPIDense(Mat mat) 573d71ae5a4SJacob Faibussowitsch { 5743501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 575ed3cc1f0SBarry Smith 5763a40ed3dSBarry Smith PetscFunctionBegin; 577aa482453SBarry Smith #if defined(PETSC_USE_LOG) 5783ba16761SJacob Faibussowitsch PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N)); 5798965ea79SLois Curfman McInnes #endif 5809566063dSJacob Faibussowitsch PetscCall(MatStashDestroy_Private(&mat->stash)); 58128b400f6SJacob Faibussowitsch PetscCheck(!mdn->vecinuse, PetscObjectComm((PetscObject)mat), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 58228b400f6SJacob Faibussowitsch PetscCheck(!mdn->matinuse, PetscObjectComm((PetscObject)mat), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 5839566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mdn->A)); 5849566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mdn->lvec)); 5859566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&mdn->Mvctx)); 5869566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mdn->cvec)); 5879566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mdn->cmat)); 58801b82886SBarry Smith 5899566063dSJacob Faibussowitsch PetscCall(PetscFree(mat->data)); 5909566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 5918baccfbdSHong Zhang 5929566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetLDA_C", NULL)); 5939566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseSetLDA_C", NULL)); 5949566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetArray_C", NULL)); 5959566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreArray_C", NULL)); 5969566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetArrayRead_C", NULL)); 5979566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreArrayRead_C", NULL)); 5989566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetArrayWrite_C", NULL)); 5999566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreArrayWrite_C", NULL)); 6009566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDensePlaceArray_C", NULL)); 6019566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseResetArray_C", NULL)); 6029566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseReplaceArray_C", NULL)); 6039566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpidense_C", NULL)); 6049566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_mpiaij_C", NULL)); 6058baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 6069566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_elemental_C", NULL)); 6078baccfbdSHong Zhang #endif 608d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 6099566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_scalapack_C", NULL)); 610d24d4204SJose E. Roman #endif 6119566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIDenseSetPreallocation_C", NULL)); 6129566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpidense_C", NULL)); 6139566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidense_mpiaij_C", NULL)); 6146718818eSStefano Zampini #if defined(PETSC_HAVE_CUDA) 6159566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaijcusparse_mpidense_C", NULL)); 6169566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidense_mpiaijcusparse_C", NULL)); 6172e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_mpidensecuda_C", NULL)); 6182e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidensecuda_mpidense_C", NULL)); 6192e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpidensecuda_C", NULL)); 6202e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaijcusparse_mpidensecuda_C", NULL)); 6212e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidensecuda_mpiaij_C", NULL)); 6222e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidensecuda_mpiaijcusparse_C", NULL)); 6232e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDAGetArray_C", NULL)); 6242e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDAGetArrayRead_C", NULL)); 6252e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDAGetArrayWrite_C", NULL)); 6262e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDARestoreArray_C", NULL)); 6272e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDARestoreArrayRead_C", NULL)); 6282e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDARestoreArrayWrite_C", NULL)); 6292e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDAPlaceArray_C", NULL)); 6302e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDAResetArray_C", NULL)); 6312e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDAReplaceArray_C", NULL)); 6326718818eSStefano Zampini #endif 63347d993e7Ssuyashtn #if defined(PETSC_HAVE_HIP) 63447d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaijhipsparse_mpidense_C", NULL)); 63547d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidense_mpiaijhipsparse_C", NULL)); 63647d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_mpidensehip_C", NULL)); 63747d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidensehip_mpidense_C", NULL)); 63847d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpidensehip_C", NULL)); 63947d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaijhipsparse_mpidensehip_C", NULL)); 64047d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidensehip_mpiaij_C", NULL)); 64147d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidensehip_mpiaijhipsparse_C", NULL)); 64247d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPGetArray_C", NULL)); 64347d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPGetArrayRead_C", NULL)); 64447d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPGetArrayWrite_C", NULL)); 64547d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPRestoreArray_C", NULL)); 64647d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPRestoreArrayRead_C", NULL)); 64747d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPRestoreArrayWrite_C", NULL)); 64847d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPPlaceArray_C", NULL)); 64947d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPResetArray_C", NULL)); 65047d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPReplaceArray_C", NULL)); 65147d993e7Ssuyashtn #endif 6529566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumn_C", NULL)); 6539566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumn_C", NULL)); 6549566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVec_C", NULL)); 6559566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVec_C", NULL)); 6569566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVecRead_C", NULL)); 6579566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVecRead_C", NULL)); 6589566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVecWrite_C", NULL)); 6599566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVecWrite_C", NULL)); 6609566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetSubMatrix_C", NULL)); 6619566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreSubMatrix_C", NULL)); 662f8103e6bSStefano Zampini 663f8103e6bSStefano Zampini PetscCall(PetscObjectCompose((PetscObject)mat, "DiagonalBlock", NULL)); 6643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6658965ea79SLois Curfman McInnes } 66639ddd567SLois Curfman McInnes 66752c5f739Sprj- PETSC_INTERN PetscErrorCode MatView_SeqDense(Mat, PetscViewer); 66852c5f739Sprj- 6699804daf3SBarry Smith #include <petscdraw.h> 670d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) 671d71ae5a4SJacob Faibussowitsch { 67239ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 673616b8fbbSStefano Zampini PetscMPIInt rank; 67419fd82e9SBarry Smith PetscViewerType vtype; 675ace3abfcSBarry Smith PetscBool iascii, isdraw; 676b0a32e0cSBarry Smith PetscViewer sviewer; 677f3ef73ceSBarry Smith PetscViewerFormat format; 6788965ea79SLois Curfman McInnes 6793a40ed3dSBarry Smith PetscFunctionBegin; 6809566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 6819566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 6829566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 68332077d6dSBarry Smith if (iascii) { 6849566063dSJacob Faibussowitsch PetscCall(PetscViewerGetType(viewer, &vtype)); 6859566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 686456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 6874e220ebcSLois Curfman McInnes MatInfo info; 6889566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 6899566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 6909371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, " [%d] local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %" PetscInt_FMT " \n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 6919371c9d4SSatish Balay (PetscInt)info.memory)); 6929566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 6939566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 6946f08ad05SPierre Jolivet if (mdn->Mvctx) PetscCall(PetscSFView(mdn->Mvctx, viewer)); 6953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 696fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 6973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6988965ea79SLois Curfman McInnes } 699f1af5d2fSBarry Smith } else if (isdraw) { 700b0a32e0cSBarry Smith PetscDraw draw; 701ace3abfcSBarry Smith PetscBool isnull; 702f1af5d2fSBarry Smith 7039566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 7049566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 7053ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 706f1af5d2fSBarry Smith } 70777ed5343SBarry Smith 7087da1fb6eSBarry Smith { 7098965ea79SLois Curfman McInnes /* assemble the entire matrix onto first processor. */ 7108965ea79SLois Curfman McInnes Mat A; 711d0f46423SBarry Smith PetscInt M = mat->rmap->N, N = mat->cmap->N, m, row, i, nz; 712ba8c8a56SBarry Smith PetscInt *cols; 713ba8c8a56SBarry Smith PetscScalar *vals; 7148965ea79SLois Curfman McInnes 7159566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A)); 716dd400576SPatrick Sanan if (rank == 0) { 7179566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, M, N, M, N)); 7183a40ed3dSBarry Smith } else { 7199566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, 0, 0, M, N)); 7208965ea79SLois Curfman McInnes } 7217adad957SLisandro Dalcin /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */ 7229566063dSJacob Faibussowitsch PetscCall(MatSetType(A, MATMPIDENSE)); 7239566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(A, NULL)); 7248965ea79SLois Curfman McInnes 72539ddd567SLois Curfman McInnes /* Copy the matrix ... This isn't the most efficient means, 72639ddd567SLois Curfman McInnes but it's quick for now */ 72751022da4SBarry Smith A->insertmode = INSERT_VALUES; 7282205254eSKarl Rupp 7292205254eSKarl Rupp row = mat->rmap->rstart; 7302205254eSKarl Rupp m = mdn->A->rmap->n; 7318965ea79SLois Curfman McInnes for (i = 0; i < m; i++) { 7329566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIDense(mat, row, &nz, &cols, &vals)); 7339566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIDense(A, 1, &row, nz, cols, vals, INSERT_VALUES)); 7349566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIDense(mat, row, &nz, &cols, &vals)); 73539ddd567SLois Curfman McInnes row++; 7368965ea79SLois Curfman McInnes } 7378965ea79SLois Curfman McInnes 7389566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 7399566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 7409566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 741dd400576SPatrick Sanan if (rank == 0) { 7429566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)((Mat_MPIDense *)(A->data))->A, ((PetscObject)mat)->name)); 7439566063dSJacob Faibussowitsch PetscCall(MatView_SeqDense(((Mat_MPIDense *)(A->data))->A, sviewer)); 7448965ea79SLois Curfman McInnes } 7459566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 7469566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 7479566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 7488965ea79SLois Curfman McInnes } 7493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7508965ea79SLois Curfman McInnes } 7518965ea79SLois Curfman McInnes 752d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIDense(Mat mat, PetscViewer viewer) 753d71ae5a4SJacob Faibussowitsch { 754ace3abfcSBarry Smith PetscBool iascii, isbinary, isdraw, issocket; 7558965ea79SLois Curfman McInnes 756433994e6SBarry Smith PetscFunctionBegin; 7579566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 7589566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 7599566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 7609566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 7610f5bd95cSBarry Smith 76232077d6dSBarry Smith if (iascii || issocket || isdraw) { 7639566063dSJacob Faibussowitsch PetscCall(MatView_MPIDense_ASCIIorDraworSocket(mat, viewer)); 7641baa6e33SBarry Smith } else if (isbinary) PetscCall(MatView_Dense_Binary(mat, viewer)); 7653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7668965ea79SLois Curfman McInnes } 7678965ea79SLois Curfman McInnes 768d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetInfo_MPIDense(Mat A, MatInfoType flag, MatInfo *info) 769d71ae5a4SJacob Faibussowitsch { 7703501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense *)A->data; 7713501a2bdSLois Curfman McInnes Mat mdn = mat->A; 7723966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 7738965ea79SLois Curfman McInnes 7743a40ed3dSBarry Smith PetscFunctionBegin; 7754e220ebcSLois Curfman McInnes info->block_size = 1.0; 7762205254eSKarl Rupp 7779566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mdn, MAT_LOCAL, info)); 7782205254eSKarl Rupp 7799371c9d4SSatish Balay isend[0] = info->nz_used; 7809371c9d4SSatish Balay isend[1] = info->nz_allocated; 7819371c9d4SSatish Balay isend[2] = info->nz_unneeded; 7829371c9d4SSatish Balay isend[3] = info->memory; 7839371c9d4SSatish Balay isend[4] = info->mallocs; 7848965ea79SLois Curfman McInnes if (flag == MAT_LOCAL) { 7854e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 7864e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 7874e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 7884e220ebcSLois Curfman McInnes info->memory = isend[3]; 7894e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 7908965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 7911c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)A))); 7922205254eSKarl Rupp 7934e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7944e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7954e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7964e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7974e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7988965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 7991c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)A))); 8002205254eSKarl Rupp 8014e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 8024e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 8034e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 8044e220ebcSLois Curfman McInnes info->memory = irecv[3]; 8054e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 8068965ea79SLois Curfman McInnes } 8074e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 8084e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 8094e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 8103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8118965ea79SLois Curfman McInnes } 8128965ea79SLois Curfman McInnes 813d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetOption_MPIDense(Mat A, MatOption op, PetscBool flg) 814d71ae5a4SJacob Faibussowitsch { 81539ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense *)A->data; 8168965ea79SLois Curfman McInnes 8173a40ed3dSBarry Smith PetscFunctionBegin; 81812c028f9SKris Buschelman switch (op) { 819512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 82012c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 82112c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 82243674050SBarry Smith MatCheckPreallocated(A, 1); 8239566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 82412c028f9SKris Buschelman break; 82512c028f9SKris Buschelman case MAT_ROW_ORIENTED: 82643674050SBarry Smith MatCheckPreallocated(A, 1); 8274e0d8c25SBarry Smith a->roworiented = flg; 8289566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 82912c028f9SKris Buschelman break; 8308c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 83113fa8e87SLisandro Dalcin case MAT_KEEP_NONZERO_PATTERN: 83212c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 833d71ae5a4SJacob Faibussowitsch case MAT_SORTED_FULL: 834d71ae5a4SJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 835d71ae5a4SJacob Faibussowitsch break; 836d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES: 837d71ae5a4SJacob Faibussowitsch a->donotstash = flg; 838d71ae5a4SJacob Faibussowitsch break; 83977e54ba9SKris Buschelman case MAT_SYMMETRIC: 84077e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 8419a4540c5SBarry Smith case MAT_HERMITIAN: 8429a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 843b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 844b94d7dedSBarry Smith case MAT_SPD: 845600fe468SBarry Smith case MAT_IGNORE_LOWER_TRIANGULAR: 8465d7aebe8SStefano Zampini case MAT_IGNORE_ZERO_ENTRIES: 847b94d7dedSBarry Smith case MAT_SPD_ETERNAL: 848b94d7dedSBarry Smith /* if the diagonal matrix is square it inherits some of the properties above */ 8499566063dSJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 85077e54ba9SKris Buschelman break; 851d71ae5a4SJacob Faibussowitsch default: 852d71ae5a4SJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "unknown option %s", MatOptions[op]); 8533a40ed3dSBarry Smith } 8543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8558965ea79SLois Curfman McInnes } 8568965ea79SLois Curfman McInnes 857d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDiagonalScale_MPIDense(Mat A, Vec ll, Vec rr) 858d71ae5a4SJacob Faibussowitsch { 8595b2fa520SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)A->data; 860637a0070SStefano Zampini const PetscScalar *l; 861637a0070SStefano Zampini PetscScalar x, *v, *vv, *r; 862637a0070SStefano Zampini PetscInt i, j, s2a, s3a, s2, s3, m = mdn->A->rmap->n, n = mdn->A->cmap->n, lda; 8635b2fa520SLois Curfman McInnes 8645b2fa520SLois Curfman McInnes PetscFunctionBegin; 8659566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(mdn->A, &vv)); 8669566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(mdn->A, &lda)); 8679566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, &s2, &s3)); 8685b2fa520SLois Curfman McInnes if (ll) { 8699566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll, &s2a)); 87008401ef6SPierre Jolivet PetscCheck(s2a == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Left scaling vector non-conforming local size, %" PetscInt_FMT " != %" PetscInt_FMT, s2a, s2); 8719566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(ll, &l)); 8725b2fa520SLois Curfman McInnes for (i = 0; i < m; i++) { 8735b2fa520SLois Curfman McInnes x = l[i]; 874637a0070SStefano Zampini v = vv + i; 8759371c9d4SSatish Balay for (j = 0; j < n; j++) { 8769371c9d4SSatish Balay (*v) *= x; 8779371c9d4SSatish Balay v += lda; 8789371c9d4SSatish Balay } 8795b2fa520SLois Curfman McInnes } 8809566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(ll, &l)); 8819566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(1.0 * n * m)); 8825b2fa520SLois Curfman McInnes } 8835b2fa520SLois Curfman McInnes if (rr) { 884637a0070SStefano Zampini const PetscScalar *ar; 885637a0070SStefano Zampini 8869566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &s3a)); 88708401ef6SPierre Jolivet PetscCheck(s3a == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Right scaling vec non-conforming local size, %" PetscInt_FMT " != %" PetscInt_FMT ".", s3a, s3); 8889566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(rr, &ar)); 8896f08ad05SPierre Jolivet if (!mdn->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); 8909566063dSJacob Faibussowitsch PetscCall(VecGetArray(mdn->lvec, &r)); 8919566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(mdn->Mvctx, MPIU_SCALAR, ar, r, MPI_REPLACE)); 8929566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(mdn->Mvctx, MPIU_SCALAR, ar, r, MPI_REPLACE)); 8939566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(rr, &ar)); 8945b2fa520SLois Curfman McInnes for (i = 0; i < n; i++) { 8955b2fa520SLois Curfman McInnes x = r[i]; 896637a0070SStefano Zampini v = vv + i * lda; 8972205254eSKarl Rupp for (j = 0; j < m; j++) (*v++) *= x; 8985b2fa520SLois Curfman McInnes } 8999566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mdn->lvec, &r)); 9009566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(1.0 * n * m)); 9015b2fa520SLois Curfman McInnes } 9029566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(mdn->A, &vv)); 9033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9045b2fa520SLois Curfman McInnes } 9055b2fa520SLois Curfman McInnes 906d71ae5a4SJacob Faibussowitsch PetscErrorCode MatNorm_MPIDense(Mat A, NormType type, PetscReal *nrm) 907d71ae5a4SJacob Faibussowitsch { 9083501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)A->data; 90913f74950SBarry Smith PetscInt i, j; 910616b8fbbSStefano Zampini PetscMPIInt size; 911329f5518SBarry Smith PetscReal sum = 0.0; 912637a0070SStefano Zampini const PetscScalar *av, *v; 9133501a2bdSLois Curfman McInnes 9143a40ed3dSBarry Smith PetscFunctionBegin; 9159566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(mdn->A, &av)); 916637a0070SStefano Zampini v = av; 9179566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 918616b8fbbSStefano Zampini if (size == 1) { 9199566063dSJacob Faibussowitsch PetscCall(MatNorm(mdn->A, type, nrm)); 9203501a2bdSLois Curfman McInnes } else { 9213501a2bdSLois Curfman McInnes if (type == NORM_FROBENIUS) { 922d0f46423SBarry Smith for (i = 0; i < mdn->A->cmap->n * mdn->A->rmap->n; i++) { 9239371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 9249371c9d4SSatish Balay v++; 9253501a2bdSLois Curfman McInnes } 9261c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A))); 9278f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 9289566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * mdn->A->cmap->n * mdn->A->rmap->n)); 9293a40ed3dSBarry Smith } else if (type == NORM_1) { 930329f5518SBarry Smith PetscReal *tmp, *tmp2; 9319566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(A->cmap->N, &tmp, A->cmap->N, &tmp2)); 932064f8208SBarry Smith *nrm = 0.0; 933637a0070SStefano Zampini v = av; 934d0f46423SBarry Smith for (j = 0; j < mdn->A->cmap->n; j++) { 935d0f46423SBarry Smith for (i = 0; i < mdn->A->rmap->n; i++) { 9369371c9d4SSatish Balay tmp[j] += PetscAbsScalar(*v); 9379371c9d4SSatish Balay v++; 9383501a2bdSLois Curfman McInnes } 9393501a2bdSLois Curfman McInnes } 9401c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(tmp, tmp2, A->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A))); 941d0f46423SBarry Smith for (j = 0; j < A->cmap->N; j++) { 942064f8208SBarry Smith if (tmp2[j] > *nrm) *nrm = tmp2[j]; 9433501a2bdSLois Curfman McInnes } 9449566063dSJacob Faibussowitsch PetscCall(PetscFree2(tmp, tmp2)); 9459566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(A->cmap->n * A->rmap->n)); 9463a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 947329f5518SBarry Smith PetscReal ntemp; 9489566063dSJacob Faibussowitsch PetscCall(MatNorm(mdn->A, type, &ntemp)); 9491c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&ntemp, nrm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A))); 950ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "No support for two norm"); 9513501a2bdSLois Curfman McInnes } 9529566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(mdn->A, &av)); 9533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9543501a2bdSLois Curfman McInnes } 9553501a2bdSLois Curfman McInnes 956d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTranspose_MPIDense(Mat A, MatReuse reuse, Mat *matout) 957d71ae5a4SJacob Faibussowitsch { 9583501a2bdSLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense *)A->data; 9593501a2bdSLois Curfman McInnes Mat B; 960d0f46423SBarry Smith PetscInt M = A->rmap->N, N = A->cmap->N, m, n, *rwork, rstart = A->rmap->rstart; 961637a0070SStefano Zampini PetscInt j, i, lda; 96287828ca2SBarry Smith PetscScalar *v; 9633501a2bdSLois Curfman McInnes 9643a40ed3dSBarry Smith PetscFunctionBegin; 9657fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout)); 966cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 9679566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 9689566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M)); 9699566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)A)->type_name)); 9709566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(B, NULL)); 971637a0070SStefano Zampini } else B = *matout; 9723501a2bdSLois Curfman McInnes 9739371c9d4SSatish Balay m = a->A->rmap->n; 9749371c9d4SSatish Balay n = a->A->cmap->n; 9759566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A, (const PetscScalar **)&v)); 9769566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &lda)); 9779566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &rwork)); 9783501a2bdSLois Curfman McInnes for (i = 0; i < m; i++) rwork[i] = rstart + i; 9791acff37aSSatish Balay for (j = 0; j < n; j++) { 9809566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, 1, &j, m, rwork, v, INSERT_VALUES)); 981637a0070SStefano Zampini v += lda; 9823501a2bdSLois Curfman McInnes } 9839566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A, (const PetscScalar **)&v)); 9849566063dSJacob Faibussowitsch PetscCall(PetscFree(rwork)); 9859566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 9869566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 987cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) { 9883501a2bdSLois Curfman McInnes *matout = B; 9893501a2bdSLois Curfman McInnes } else { 9909566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(A, &B)); 9913501a2bdSLois Curfman McInnes } 9923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 993096963f5SLois Curfman McInnes } 994096963f5SLois Curfman McInnes 9956849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat, MatDuplicateOption, Mat *); 99652c5f739Sprj- PETSC_INTERN PetscErrorCode MatScale_MPIDense(Mat, PetscScalar); 9978965ea79SLois Curfman McInnes 998d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetUp_MPIDense(Mat A) 999d71ae5a4SJacob Faibussowitsch { 1000273d9f13SBarry Smith PetscFunctionBegin; 10019566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->rmap)); 10029566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->cmap)); 100348a46eb9SPierre Jolivet if (!A->preallocated) PetscCall(MatMPIDenseSetPreallocation(A, NULL)); 10043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1005273d9f13SBarry Smith } 1006273d9f13SBarry Smith 1007d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPY_MPIDense(Mat Y, PetscScalar alpha, Mat X, MatStructure str) 1008d71ae5a4SJacob Faibussowitsch { 1009488007eeSBarry Smith Mat_MPIDense *A = (Mat_MPIDense *)Y->data, *B = (Mat_MPIDense *)X->data; 1010488007eeSBarry Smith 1011488007eeSBarry Smith PetscFunctionBegin; 10129566063dSJacob Faibussowitsch PetscCall(MatAXPY(A->A, alpha, B->A, str)); 10133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1014488007eeSBarry Smith } 1015488007eeSBarry Smith 1016d71ae5a4SJacob Faibussowitsch PetscErrorCode MatConjugate_MPIDense(Mat mat) 1017d71ae5a4SJacob Faibussowitsch { 1018ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense *)mat->data; 1019ba337c44SJed Brown 1020ba337c44SJed Brown PetscFunctionBegin; 10219566063dSJacob Faibussowitsch PetscCall(MatConjugate(a->A)); 10223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1023ba337c44SJed Brown } 1024ba337c44SJed Brown 1025d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRealPart_MPIDense(Mat A) 1026d71ae5a4SJacob Faibussowitsch { 1027ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense *)A->data; 1028ba337c44SJed Brown 1029ba337c44SJed Brown PetscFunctionBegin; 10309566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 10313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1032ba337c44SJed Brown } 1033ba337c44SJed Brown 1034d71ae5a4SJacob Faibussowitsch PetscErrorCode MatImaginaryPart_MPIDense(Mat A) 1035d71ae5a4SJacob Faibussowitsch { 1036ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense *)A->data; 1037ba337c44SJed Brown 1038ba337c44SJed Brown PetscFunctionBegin; 10399566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 10403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1041ba337c44SJed Brown } 1042ba337c44SJed Brown 1043d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatGetColumnVector_MPIDense(Mat A, Vec v, PetscInt col) 1044d71ae5a4SJacob Faibussowitsch { 1045637a0070SStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 104649a6ff4bSBarry Smith 104749a6ff4bSBarry Smith PetscFunctionBegin; 104828b400f6SJacob Faibussowitsch PetscCheck(a->A, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Missing local matrix"); 104928b400f6SJacob Faibussowitsch PetscCheck(a->A->ops->getcolumnvector, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Missing get column operation"); 10509566063dSJacob Faibussowitsch PetscCall((*a->A->ops->getcolumnvector)(a->A, v, col)); 10513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 105249a6ff4bSBarry Smith } 105349a6ff4bSBarry Smith 1054857cbf51SRichard Tran Mills PETSC_INTERN PetscErrorCode MatGetColumnReductions_SeqDense(Mat, PetscInt, PetscReal *); 105552c5f739Sprj- 1056d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetColumnReductions_MPIDense(Mat A, PetscInt type, PetscReal *reductions) 1057d71ae5a4SJacob Faibussowitsch { 1058a873a8cdSSam Reynolds PetscInt i, m, n; 10590716a85fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense *)A->data; 10600716a85fSBarry Smith PetscReal *work; 10610716a85fSBarry Smith 10620716a85fSBarry Smith PetscFunctionBegin; 10639566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &n)); 10649566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &work)); 1065857cbf51SRichard Tran Mills if (type == REDUCTION_MEAN_REALPART) { 10669566063dSJacob Faibussowitsch PetscCall(MatGetColumnReductions_SeqDense(a->A, (PetscInt)REDUCTION_SUM_REALPART, work)); 1067857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_IMAGINARYPART) { 10689566063dSJacob Faibussowitsch PetscCall(MatGetColumnReductions_SeqDense(a->A, (PetscInt)REDUCTION_SUM_IMAGINARYPART, work)); 1069a873a8cdSSam Reynolds } else { 10709566063dSJacob Faibussowitsch PetscCall(MatGetColumnReductions_SeqDense(a->A, type, work)); 1071a873a8cdSSam Reynolds } 1072857cbf51SRichard Tran Mills if (type == NORM_2) { 10730716a85fSBarry Smith for (i = 0; i < n; i++) work[i] *= work[i]; 10740716a85fSBarry Smith } 1075857cbf51SRichard Tran Mills if (type == NORM_INFINITY) { 10761c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_MAX, A->hdr.comm)); 10770716a85fSBarry Smith } else { 10781c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_SUM, A->hdr.comm)); 10790716a85fSBarry Smith } 10809566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 1081857cbf51SRichard Tran Mills if (type == NORM_2) { 1082a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] = PetscSqrtReal(reductions[i]); 1083857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 1084a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] /= m; 10850716a85fSBarry Smith } 10863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 10870716a85fSBarry Smith } 10880716a85fSBarry Smith 1089d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetRandom_MPIDense(Mat x, PetscRandom rctx) 1090d71ae5a4SJacob Faibussowitsch { 109173a71a0fSBarry Smith Mat_MPIDense *d = (Mat_MPIDense *)x->data; 109273a71a0fSBarry Smith 109373a71a0fSBarry Smith PetscFunctionBegin; 10949566063dSJacob Faibussowitsch PetscCall(MatSetRandom(d->A, rctx)); 10953faff063SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 10963faff063SStefano Zampini x->offloadmask = d->A->offloadmask; 10973faff063SStefano Zampini #endif 10983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 109973a71a0fSBarry Smith } 110073a71a0fSBarry Smith 1101d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIDense(Mat A, PetscBool *missing, PetscInt *d) 1102d71ae5a4SJacob Faibussowitsch { 11033b49f96aSBarry Smith PetscFunctionBegin; 11043b49f96aSBarry Smith *missing = PETSC_FALSE; 11053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 11063b49f96aSBarry Smith } 11073b49f96aSBarry Smith 11084222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat, Mat, PetscReal, Mat); 1109cc48ffa7SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat, Mat, Mat); 11106718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat, Mat, PetscReal, Mat); 1111a1f9a5e6SStefano Zampini static PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat, Mat, Mat); 11126718818eSStefano Zampini static PetscErrorCode MatEqual_MPIDense(Mat, Mat, PetscBool *); 11136718818eSStefano Zampini static PetscErrorCode MatLoad_MPIDense(Mat, PetscViewer); 1114cc48ffa7SToby Isaac 111509dc0095SBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIDense, 111609dc0095SBarry Smith MatGetRow_MPIDense, 111709dc0095SBarry Smith MatRestoreRow_MPIDense, 111809dc0095SBarry Smith MatMult_MPIDense, 111997304618SKris Buschelman /* 4*/ MatMultAdd_MPIDense, 11207c922b88SBarry Smith MatMultTranspose_MPIDense, 11217c922b88SBarry Smith MatMultTransposeAdd_MPIDense, 1122f4259b30SLisandro Dalcin NULL, 1123f4259b30SLisandro Dalcin NULL, 1124f4259b30SLisandro Dalcin NULL, 1125f4259b30SLisandro Dalcin /* 10*/ NULL, 1126f4259b30SLisandro Dalcin NULL, 1127f4259b30SLisandro Dalcin NULL, 1128f4259b30SLisandro Dalcin NULL, 112909dc0095SBarry Smith MatTranspose_MPIDense, 113097304618SKris Buschelman /* 15*/ MatGetInfo_MPIDense, 11316e4ee0c6SHong Zhang MatEqual_MPIDense, 113209dc0095SBarry Smith MatGetDiagonal_MPIDense, 11335b2fa520SLois Curfman McInnes MatDiagonalScale_MPIDense, 113409dc0095SBarry Smith MatNorm_MPIDense, 113597304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPIDense, 113609dc0095SBarry Smith MatAssemblyEnd_MPIDense, 113709dc0095SBarry Smith MatSetOption_MPIDense, 113809dc0095SBarry Smith MatZeroEntries_MPIDense, 1139d519adbfSMatthew Knepley /* 24*/ MatZeroRows_MPIDense, 1140f4259b30SLisandro Dalcin NULL, 1141f4259b30SLisandro Dalcin NULL, 1142f4259b30SLisandro Dalcin NULL, 1143f4259b30SLisandro Dalcin NULL, 11444994cf47SJed Brown /* 29*/ MatSetUp_MPIDense, 1145f4259b30SLisandro Dalcin NULL, 1146f4259b30SLisandro Dalcin NULL, 1147c56a70eeSBarry Smith MatGetDiagonalBlock_MPIDense, 1148f4259b30SLisandro Dalcin NULL, 1149d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPIDense, 1150f4259b30SLisandro Dalcin NULL, 1151f4259b30SLisandro Dalcin NULL, 1152f4259b30SLisandro Dalcin NULL, 1153f4259b30SLisandro Dalcin NULL, 1154d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPIDense, 11557dae84e0SHong Zhang MatCreateSubMatrices_MPIDense, 1156f4259b30SLisandro Dalcin NULL, 115709dc0095SBarry Smith MatGetValues_MPIDense, 1158a76f77c3SStefano Zampini MatCopy_MPIDense, 1159f4259b30SLisandro Dalcin /* 44*/ NULL, 116009dc0095SBarry Smith MatScale_MPIDense, 11612f605a99SJose E. Roman MatShift_MPIDense, 1162f4259b30SLisandro Dalcin NULL, 1163f4259b30SLisandro Dalcin NULL, 116473a71a0fSBarry Smith /* 49*/ MatSetRandom_MPIDense, 1165f4259b30SLisandro Dalcin NULL, 1166f4259b30SLisandro Dalcin NULL, 1167f4259b30SLisandro Dalcin NULL, 1168f4259b30SLisandro Dalcin NULL, 1169f4259b30SLisandro Dalcin /* 54*/ NULL, 1170f4259b30SLisandro Dalcin NULL, 1171f4259b30SLisandro Dalcin NULL, 1172f4259b30SLisandro Dalcin NULL, 1173f4259b30SLisandro Dalcin NULL, 11747dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPIDense, 1175b9b97703SBarry Smith MatDestroy_MPIDense, 1176b9b97703SBarry Smith MatView_MPIDense, 1177f4259b30SLisandro Dalcin NULL, 1178f4259b30SLisandro Dalcin NULL, 1179f4259b30SLisandro Dalcin /* 64*/ NULL, 1180f4259b30SLisandro Dalcin NULL, 1181f4259b30SLisandro Dalcin NULL, 1182f4259b30SLisandro Dalcin NULL, 1183f4259b30SLisandro Dalcin NULL, 1184f4259b30SLisandro Dalcin /* 69*/ NULL, 1185f4259b30SLisandro Dalcin NULL, 1186f4259b30SLisandro Dalcin NULL, 1187f4259b30SLisandro Dalcin NULL, 1188f4259b30SLisandro Dalcin NULL, 1189f4259b30SLisandro Dalcin /* 74*/ NULL, 1190f4259b30SLisandro Dalcin NULL, 1191f4259b30SLisandro Dalcin NULL, 1192f4259b30SLisandro Dalcin NULL, 1193f4259b30SLisandro Dalcin NULL, 1194f4259b30SLisandro Dalcin /* 79*/ NULL, 1195f4259b30SLisandro Dalcin NULL, 1196f4259b30SLisandro Dalcin NULL, 1197f4259b30SLisandro Dalcin NULL, 11985bba2384SShri Abhyankar /* 83*/ MatLoad_MPIDense, 1199f4259b30SLisandro Dalcin NULL, 1200f4259b30SLisandro Dalcin NULL, 1201f4259b30SLisandro Dalcin NULL, 1202f4259b30SLisandro Dalcin NULL, 1203f4259b30SLisandro Dalcin NULL, 1204f4259b30SLisandro Dalcin /* 89*/ NULL, 1205f4259b30SLisandro Dalcin NULL, 1206f4259b30SLisandro Dalcin NULL, 1207f4259b30SLisandro Dalcin NULL, 1208f4259b30SLisandro Dalcin NULL, 1209f4259b30SLisandro Dalcin /* 94*/ NULL, 1210f4259b30SLisandro Dalcin NULL, 12116718818eSStefano Zampini MatMatTransposeMultSymbolic_MPIDense_MPIDense, 1212cc48ffa7SToby Isaac MatMatTransposeMultNumeric_MPIDense_MPIDense, 1213f4259b30SLisandro Dalcin NULL, 12144222ddf1SHong Zhang /* 99*/ MatProductSetFromOptions_MPIDense, 1215f4259b30SLisandro Dalcin NULL, 1216f4259b30SLisandro Dalcin NULL, 1217ba337c44SJed Brown MatConjugate_MPIDense, 1218f4259b30SLisandro Dalcin NULL, 1219f4259b30SLisandro Dalcin /*104*/ NULL, 1220ba337c44SJed Brown MatRealPart_MPIDense, 1221ba337c44SJed Brown MatImaginaryPart_MPIDense, 1222f4259b30SLisandro Dalcin NULL, 1223f4259b30SLisandro Dalcin NULL, 1224f4259b30SLisandro Dalcin /*109*/ NULL, 1225f4259b30SLisandro Dalcin NULL, 1226f4259b30SLisandro Dalcin NULL, 122749a6ff4bSBarry Smith MatGetColumnVector_MPIDense, 12283b49f96aSBarry Smith MatMissingDiagonal_MPIDense, 1229f4259b30SLisandro Dalcin /*114*/ NULL, 1230f4259b30SLisandro Dalcin NULL, 1231f4259b30SLisandro Dalcin NULL, 1232f4259b30SLisandro Dalcin NULL, 1233f4259b30SLisandro Dalcin NULL, 1234f4259b30SLisandro Dalcin /*119*/ NULL, 1235f4259b30SLisandro Dalcin NULL, 1236f4259b30SLisandro Dalcin NULL, 1237f4259b30SLisandro Dalcin NULL, 1238f4259b30SLisandro Dalcin NULL, 1239f4259b30SLisandro Dalcin /*124*/ NULL, 1240a873a8cdSSam Reynolds MatGetColumnReductions_MPIDense, 1241f4259b30SLisandro Dalcin NULL, 1242f4259b30SLisandro Dalcin NULL, 1243f4259b30SLisandro Dalcin NULL, 1244f4259b30SLisandro Dalcin /*129*/ NULL, 1245f4259b30SLisandro Dalcin NULL, 12466718818eSStefano Zampini MatTransposeMatMultSymbolic_MPIDense_MPIDense, 1247cb20be35SHong Zhang MatTransposeMatMultNumeric_MPIDense_MPIDense, 1248f4259b30SLisandro Dalcin NULL, 1249f4259b30SLisandro Dalcin /*134*/ NULL, 1250f4259b30SLisandro Dalcin NULL, 1251f4259b30SLisandro Dalcin NULL, 1252f4259b30SLisandro Dalcin NULL, 1253f4259b30SLisandro Dalcin NULL, 1254f4259b30SLisandro Dalcin /*139*/ NULL, 1255f4259b30SLisandro Dalcin NULL, 1256f4259b30SLisandro Dalcin NULL, 1257f4259b30SLisandro Dalcin NULL, 1258f4259b30SLisandro Dalcin NULL, 12594222ddf1SHong Zhang MatCreateMPIMatConcatenateSeqMat_MPIDense, 1260f4259b30SLisandro Dalcin /*145*/ NULL, 1261f4259b30SLisandro Dalcin NULL, 126299a7f59eSMark Adams NULL, 126399a7f59eSMark Adams NULL, 12647fb60732SBarry Smith NULL, 1265dec0b466SHong Zhang /*150*/ NULL, 1266dec0b466SHong Zhang NULL}; 12678965ea79SLois Curfman McInnes 1268d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIDenseSetPreallocation_MPIDense(Mat mat, PetscScalar *data) 1269d71ae5a4SJacob Faibussowitsch { 1270637a0070SStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)mat->data; 127147d993e7Ssuyashtn MatType mtype = MATSEQDENSE; 1272a23d5eceSKris Buschelman 1273a23d5eceSKris Buschelman PetscFunctionBegin; 127428b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)mat), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 12759566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 12769566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 1277637a0070SStefano Zampini if (!a->A) { 12789566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &a->A)); 12799566063dSJacob Faibussowitsch PetscCall(MatSetSizes(a->A, mat->rmap->n, mat->cmap->N, mat->rmap->n, mat->cmap->N)); 1280637a0070SStefano Zampini } 128147d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) 128247d993e7Ssuyashtn PetscBool iscuda; 12839566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)mat, MATMPIDENSECUDA, &iscuda)); 128447d993e7Ssuyashtn if (iscuda) mtype = MATSEQDENSECUDA; 128547d993e7Ssuyashtn #endif 128647d993e7Ssuyashtn #if defined(PETSC_HAVE_HIP) 128747d993e7Ssuyashtn PetscBool iship; 128847d993e7Ssuyashtn PetscCall(PetscObjectTypeCompare((PetscObject)mat, MATMPIDENSEHIP, &iship)); 128947d993e7Ssuyashtn if (iship) mtype = MATSEQDENSEHIP; 129047d993e7Ssuyashtn #endif 129147d993e7Ssuyashtn PetscCall(MatSetType(a->A, mtype)); 12929566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(a->A, data)); 129347d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) 12943faff063SStefano Zampini mat->offloadmask = a->A->offloadmask; 12953faff063SStefano Zampini #endif 1296637a0070SStefano Zampini mat->preallocated = PETSC_TRUE; 12976f08ad05SPierre Jolivet mat->assembled = PETSC_TRUE; 12983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1299a23d5eceSKris Buschelman } 1300a23d5eceSKris Buschelman 1301d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIDense(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 1302d71ae5a4SJacob Faibussowitsch { 13034e29119aSPierre Jolivet Mat B, C; 13044e29119aSPierre Jolivet 13054e29119aSPierre Jolivet PetscFunctionBegin; 13069566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &C)); 13079566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqAIJ_SeqDense(C, MATSEQDENSE, MAT_INITIAL_MATRIX, &B)); 13089566063dSJacob Faibussowitsch PetscCall(MatDestroy(&C)); 13094e29119aSPierre Jolivet if (reuse == MAT_REUSE_MATRIX) { 13104e29119aSPierre Jolivet C = *newmat; 13114e29119aSPierre Jolivet } else C = NULL; 13129566063dSJacob Faibussowitsch PetscCall(MatCreateMPIMatConcatenateSeqMat(PetscObjectComm((PetscObject)A), B, A->cmap->n, !C ? MAT_INITIAL_MATRIX : MAT_REUSE_MATRIX, &C)); 13139566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 13144e29119aSPierre Jolivet if (reuse == MAT_INPLACE_MATRIX) { 13159566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &C)); 13164e29119aSPierre Jolivet } else if (reuse == MAT_INITIAL_MATRIX) *newmat = C; 13173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13184e29119aSPierre Jolivet } 13194e29119aSPierre Jolivet 1320d71ae5a4SJacob Faibussowitsch PetscErrorCode MatConvert_MPIDense_MPIAIJ(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 1321d71ae5a4SJacob Faibussowitsch { 13224e29119aSPierre Jolivet Mat B, C; 13234e29119aSPierre Jolivet 13244e29119aSPierre Jolivet PetscFunctionBegin; 13259566063dSJacob Faibussowitsch PetscCall(MatDenseGetLocalMatrix(A, &C)); 13269566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqDense_SeqAIJ(C, MATSEQAIJ, MAT_INITIAL_MATRIX, &B)); 13274e29119aSPierre Jolivet if (reuse == MAT_REUSE_MATRIX) { 13284e29119aSPierre Jolivet C = *newmat; 13294e29119aSPierre Jolivet } else C = NULL; 13309566063dSJacob Faibussowitsch PetscCall(MatCreateMPIMatConcatenateSeqMat(PetscObjectComm((PetscObject)A), B, A->cmap->n, !C ? MAT_INITIAL_MATRIX : MAT_REUSE_MATRIX, &C)); 13319566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 13324e29119aSPierre Jolivet if (reuse == MAT_INPLACE_MATRIX) { 13339566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &C)); 13344e29119aSPierre Jolivet } else if (reuse == MAT_INITIAL_MATRIX) *newmat = C; 13353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13364e29119aSPierre Jolivet } 13374e29119aSPierre Jolivet 133865b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 1339d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIDense_Elemental(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 1340d71ae5a4SJacob Faibussowitsch { 13418ea901baSHong Zhang Mat mat_elemental; 134232d7a744SHong Zhang PetscScalar *v; 134332d7a744SHong Zhang PetscInt m = A->rmap->n, N = A->cmap->N, rstart = A->rmap->rstart, i, *rows, *cols; 13448ea901baSHong Zhang 13458baccfbdSHong Zhang PetscFunctionBegin; 1346378336b6SHong Zhang if (reuse == MAT_REUSE_MATRIX) { 1347378336b6SHong Zhang mat_elemental = *newmat; 13489566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(*newmat)); 1349378336b6SHong Zhang } else { 13509566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental)); 13519566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat_elemental, PETSC_DECIDE, PETSC_DECIDE, A->rmap->N, A->cmap->N)); 13529566063dSJacob Faibussowitsch PetscCall(MatSetType(mat_elemental, MATELEMENTAL)); 13539566063dSJacob Faibussowitsch PetscCall(MatSetUp(mat_elemental)); 13549566063dSJacob Faibussowitsch PetscCall(MatSetOption(mat_elemental, MAT_ROW_ORIENTED, PETSC_FALSE)); 1355378336b6SHong Zhang } 1356378336b6SHong Zhang 13579566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &rows, N, &cols)); 135832d7a744SHong Zhang for (i = 0; i < N; i++) cols[i] = i; 135932d7a744SHong Zhang for (i = 0; i < m; i++) rows[i] = rstart + i; 13608ea901baSHong Zhang 1361637a0070SStefano Zampini /* PETSc-Elemental interface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */ 13629566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(A, &v)); 13639566063dSJacob Faibussowitsch PetscCall(MatSetValues(mat_elemental, m, rows, N, cols, v, ADD_VALUES)); 13649566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY)); 13659566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY)); 13669566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(A, &v)); 13679566063dSJacob Faibussowitsch PetscCall(PetscFree2(rows, cols)); 13688ea901baSHong Zhang 1369511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 13709566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &mat_elemental)); 13718ea901baSHong Zhang } else { 13728ea901baSHong Zhang *newmat = mat_elemental; 13738ea901baSHong Zhang } 13743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13758baccfbdSHong Zhang } 137665b80a83SHong Zhang #endif 13778baccfbdSHong Zhang 1378d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseGetColumn_MPIDense(Mat A, PetscInt col, PetscScalar **vals) 1379d71ae5a4SJacob Faibussowitsch { 138086aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense *)A->data; 138186aefd0dSHong Zhang 138286aefd0dSHong Zhang PetscFunctionBegin; 13839566063dSJacob Faibussowitsch PetscCall(MatDenseGetColumn(mat->A, col, vals)); 13843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 138586aefd0dSHong Zhang } 138686aefd0dSHong Zhang 1387d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseRestoreColumn_MPIDense(Mat A, PetscScalar **vals) 1388d71ae5a4SJacob Faibussowitsch { 138986aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense *)A->data; 139086aefd0dSHong Zhang 139186aefd0dSHong Zhang PetscFunctionBegin; 13929566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreColumn(mat->A, vals)); 13933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 139486aefd0dSHong Zhang } 139586aefd0dSHong Zhang 1396d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIDense(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) 1397d71ae5a4SJacob Faibussowitsch { 139894e2cb23SJakub Kruzik Mat_MPIDense *mat; 139994e2cb23SJakub Kruzik PetscInt m, nloc, N; 140094e2cb23SJakub Kruzik 140194e2cb23SJakub Kruzik PetscFunctionBegin; 14029566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat, &m, &N)); 14039566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(inmat, NULL, &nloc)); 140494e2cb23SJakub Kruzik if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 140594e2cb23SJakub Kruzik PetscInt sum; 140694e2cb23SJakub Kruzik 140748a46eb9SPierre Jolivet if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnership(comm, &n, &N)); 140894e2cb23SJakub Kruzik /* Check sum(n) = N */ 14091c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&n, &sum, 1, MPIU_INT, MPI_SUM, comm)); 141008401ef6SPierre Jolivet PetscCheck(sum == N, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local columns %" PetscInt_FMT " != global columns %" PetscInt_FMT, sum, N); 141194e2cb23SJakub Kruzik 14129566063dSJacob Faibussowitsch PetscCall(MatCreateDense(comm, m, n, PETSC_DETERMINE, N, NULL, outmat)); 14139566063dSJacob Faibussowitsch PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 141494e2cb23SJakub Kruzik } 141594e2cb23SJakub Kruzik 141694e2cb23SJakub Kruzik /* numeric phase */ 141794e2cb23SJakub Kruzik mat = (Mat_MPIDense *)(*outmat)->data; 14189566063dSJacob Faibussowitsch PetscCall(MatCopy(inmat, mat->A, SAME_NONZERO_PATTERN)); 14193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 142094e2cb23SJakub Kruzik } 142194e2cb23SJakub Kruzik 1422d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetColumnVec_MPIDense(Mat A, PetscInt col, Vec *v) 1423d71ae5a4SJacob Faibussowitsch { 14246947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 14256947451fSStefano Zampini PetscInt lda; 14266947451fSStefano Zampini 14276947451fSStefano Zampini PetscFunctionBegin; 142828b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 142928b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 143048a46eb9SPierre Jolivet if (!a->cvec) PetscCall(VecCreateMPIWithArray(PetscObjectComm((PetscObject)A), A->rmap->bs, A->rmap->n, A->rmap->N, NULL, &a->cvec)); 14316947451fSStefano Zampini a->vecinuse = col + 1; 14329566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &lda)); 14339566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(a->A, (PetscScalar **)&a->ptrinuse)); 14349566063dSJacob Faibussowitsch PetscCall(VecPlaceArray(a->cvec, a->ptrinuse + (size_t)col * (size_t)lda)); 14356947451fSStefano Zampini *v = a->cvec; 14363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14376947451fSStefano Zampini } 14386947451fSStefano Zampini 1439d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreColumnVec_MPIDense(Mat A, PetscInt col, Vec *v) 1440d71ae5a4SJacob Faibussowitsch { 14416947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 14426947451fSStefano Zampini 14436947451fSStefano Zampini PetscFunctionBegin; 144428b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseGetColumnVec() first"); 144528b400f6SJacob Faibussowitsch PetscCheck(a->cvec, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Missing internal column vector"); 14466947451fSStefano Zampini a->vecinuse = 0; 14479566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(a->A, (PetscScalar **)&a->ptrinuse)); 14489566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 1449742765d3SMatthew Knepley if (v) *v = NULL; 14503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14516947451fSStefano Zampini } 14526947451fSStefano Zampini 1453d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetColumnVecRead_MPIDense(Mat A, PetscInt col, Vec *v) 1454d71ae5a4SJacob Faibussowitsch { 14556947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 14566947451fSStefano Zampini PetscInt lda; 14576947451fSStefano Zampini 14586947451fSStefano Zampini PetscFunctionBegin; 145928b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 146028b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 146148a46eb9SPierre Jolivet if (!a->cvec) PetscCall(VecCreateMPIWithArray(PetscObjectComm((PetscObject)A), A->rmap->bs, A->rmap->n, A->rmap->N, NULL, &a->cvec)); 14626947451fSStefano Zampini a->vecinuse = col + 1; 14639566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &lda)); 14649566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A, &a->ptrinuse)); 14659566063dSJacob Faibussowitsch PetscCall(VecPlaceArray(a->cvec, a->ptrinuse + (size_t)col * (size_t)lda)); 14669566063dSJacob Faibussowitsch PetscCall(VecLockReadPush(a->cvec)); 14676947451fSStefano Zampini *v = a->cvec; 14683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14696947451fSStefano Zampini } 14706947451fSStefano Zampini 1471d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreColumnVecRead_MPIDense(Mat A, PetscInt col, Vec *v) 1472d71ae5a4SJacob Faibussowitsch { 14736947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 14746947451fSStefano Zampini 14756947451fSStefano Zampini PetscFunctionBegin; 14765f80ce2aSJacob Faibussowitsch PetscCheck(a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseGetColumnVec() first"); 14775f80ce2aSJacob Faibussowitsch PetscCheck(a->cvec, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing internal column vector"); 14786947451fSStefano Zampini a->vecinuse = 0; 14799566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A, &a->ptrinuse)); 14809566063dSJacob Faibussowitsch PetscCall(VecLockReadPop(a->cvec)); 14819566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 1482742765d3SMatthew Knepley if (v) *v = NULL; 14833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14846947451fSStefano Zampini } 14856947451fSStefano Zampini 1486d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetColumnVecWrite_MPIDense(Mat A, PetscInt col, Vec *v) 1487d71ae5a4SJacob Faibussowitsch { 14886947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 14896947451fSStefano Zampini PetscInt lda; 14906947451fSStefano Zampini 14916947451fSStefano Zampini PetscFunctionBegin; 14925f80ce2aSJacob Faibussowitsch PetscCheck(!a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 14935f80ce2aSJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 149448a46eb9SPierre Jolivet if (!a->cvec) PetscCall(VecCreateMPIWithArray(PetscObjectComm((PetscObject)A), A->rmap->bs, A->rmap->n, A->rmap->N, NULL, &a->cvec)); 14956947451fSStefano Zampini a->vecinuse = col + 1; 14969566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &lda)); 14979566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(a->A, (PetscScalar **)&a->ptrinuse)); 14989566063dSJacob Faibussowitsch PetscCall(VecPlaceArray(a->cvec, a->ptrinuse + (size_t)col * (size_t)lda)); 14996947451fSStefano Zampini *v = a->cvec; 15003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15016947451fSStefano Zampini } 15026947451fSStefano Zampini 1503d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDense(Mat A, PetscInt col, Vec *v) 1504d71ae5a4SJacob Faibussowitsch { 15056947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 15066947451fSStefano Zampini 15076947451fSStefano Zampini PetscFunctionBegin; 15085f80ce2aSJacob Faibussowitsch PetscCheck(a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseGetColumnVec() first"); 15095f80ce2aSJacob Faibussowitsch PetscCheck(a->cvec, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing internal column vector"); 15106947451fSStefano Zampini a->vecinuse = 0; 15119566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(a->A, (PetscScalar **)&a->ptrinuse)); 15129566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 1513742765d3SMatthew Knepley if (v) *v = NULL; 15143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15156947451fSStefano Zampini } 15166947451fSStefano Zampini 1517d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetSubMatrix_MPIDense(Mat A, PetscInt rbegin, PetscInt rend, PetscInt cbegin, PetscInt cend, Mat *v) 1518d71ae5a4SJacob Faibussowitsch { 15195ea7661aSPierre Jolivet Mat_MPIDense *a = (Mat_MPIDense *)A->data; 1520616b8fbbSStefano Zampini Mat_MPIDense *c; 1521616b8fbbSStefano Zampini MPI_Comm comm; 1522a2748737SPierre Jolivet PetscInt pbegin, pend; 15235ea7661aSPierre Jolivet 15245ea7661aSPierre Jolivet PetscFunctionBegin; 15259566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 15265f80ce2aSJacob Faibussowitsch PetscCheck(!a->vecinuse, comm, PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 15275f80ce2aSJacob Faibussowitsch PetscCheck(!a->matinuse, comm, PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 1528a2748737SPierre Jolivet pbegin = PetscMax(0, PetscMin(A->rmap->rend, rbegin) - A->rmap->rstart); 1529a2748737SPierre Jolivet pend = PetscMin(A->rmap->n, PetscMax(0, rend - A->rmap->rstart)); 15305ea7661aSPierre Jolivet if (!a->cmat) { 15319566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &a->cmat)); 15329566063dSJacob Faibussowitsch PetscCall(MatSetType(a->cmat, ((PetscObject)A)->type_name)); 1533a2748737SPierre Jolivet if (rend - rbegin == A->rmap->N) PetscCall(PetscLayoutReference(A->rmap, &a->cmat->rmap)); 1534a2748737SPierre Jolivet else { 1535a2748737SPierre Jolivet PetscCall(PetscLayoutSetLocalSize(a->cmat->rmap, pend - pbegin)); 1536a2748737SPierre Jolivet PetscCall(PetscLayoutSetSize(a->cmat->rmap, rend - rbegin)); 1537a2748737SPierre Jolivet PetscCall(PetscLayoutSetUp(a->cmat->rmap)); 1538a2748737SPierre Jolivet } 15399566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(a->cmat->cmap, cend - cbegin)); 15409566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(a->cmat->cmap)); 1541a2748737SPierre Jolivet } else { 1542a2748737SPierre Jolivet PetscBool same = (PetscBool)(rend - rbegin == a->cmat->rmap->N); 1543a2748737SPierre Jolivet if (same && a->cmat->rmap->N != A->rmap->N) { 1544a2748737SPierre Jolivet same = (PetscBool)(pend - pbegin == a->cmat->rmap->n); 1545a2748737SPierre Jolivet PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &same, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 1546a2748737SPierre Jolivet } 1547a2748737SPierre Jolivet if (!same) { 1548a2748737SPierre Jolivet PetscCall(PetscLayoutDestroy(&a->cmat->rmap)); 1549a2748737SPierre Jolivet PetscCall(PetscLayoutCreate(comm, &a->cmat->rmap)); 1550a2748737SPierre Jolivet PetscCall(PetscLayoutSetLocalSize(a->cmat->rmap, pend - pbegin)); 1551a2748737SPierre Jolivet PetscCall(PetscLayoutSetSize(a->cmat->rmap, rend - rbegin)); 1552a2748737SPierre Jolivet PetscCall(PetscLayoutSetUp(a->cmat->rmap)); 1553a2748737SPierre Jolivet } 1554a2748737SPierre Jolivet if (cend - cbegin != a->cmat->cmap->N) { 15559566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&a->cmat->cmap)); 15569566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &a->cmat->cmap)); 15579566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(a->cmat->cmap, cend - cbegin)); 15589566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(a->cmat->cmap)); 15595ea7661aSPierre Jolivet } 1560a2748737SPierre Jolivet } 1561616b8fbbSStefano Zampini c = (Mat_MPIDense *)a->cmat->data; 15625f80ce2aSJacob Faibussowitsch PetscCheck(!c->A, comm, PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 1563a2748737SPierre Jolivet PetscCall(MatDenseGetSubMatrix(a->A, pbegin, pend, cbegin, cend, &c->A)); 15643faff063SStefano Zampini 1565616b8fbbSStefano Zampini a->cmat->preallocated = PETSC_TRUE; 1566616b8fbbSStefano Zampini a->cmat->assembled = PETSC_TRUE; 15673faff063SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 15683faff063SStefano Zampini a->cmat->offloadmask = c->A->offloadmask; 15693faff063SStefano Zampini #endif 15705ea7661aSPierre Jolivet a->matinuse = cbegin + 1; 15715ea7661aSPierre Jolivet *v = a->cmat; 15723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15735ea7661aSPierre Jolivet } 15745ea7661aSPierre Jolivet 1575d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreSubMatrix_MPIDense(Mat A, Mat *v) 1576d71ae5a4SJacob Faibussowitsch { 15775ea7661aSPierre Jolivet Mat_MPIDense *a = (Mat_MPIDense *)A->data; 1578616b8fbbSStefano Zampini Mat_MPIDense *c; 15795ea7661aSPierre Jolivet 15805ea7661aSPierre Jolivet PetscFunctionBegin; 15815f80ce2aSJacob Faibussowitsch PetscCheck(a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseGetSubMatrix() first"); 15825f80ce2aSJacob Faibussowitsch PetscCheck(a->cmat, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing internal matrix"); 15835f80ce2aSJacob Faibussowitsch PetscCheck(*v == a->cmat, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Not the matrix obtained from MatDenseGetSubMatrix()"); 15845ea7661aSPierre Jolivet a->matinuse = 0; 1585616b8fbbSStefano Zampini c = (Mat_MPIDense *)a->cmat->data; 15869566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreSubMatrix(a->A, &c->A)); 1587742765d3SMatthew Knepley if (v) *v = NULL; 15883faff063SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 15893faff063SStefano Zampini A->offloadmask = a->A->offloadmask; 15903faff063SStefano Zampini #endif 15913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15925ea7661aSPierre Jolivet } 15935ea7661aSPierre Jolivet 1594002bc6daSRichard Tran Mills /*MC 1595002bc6daSRichard Tran Mills MATMPIDENSE - MATMPIDENSE = "mpidense" - A matrix type to be used for distributed dense matrices. 1596002bc6daSRichard Tran Mills 15972ef1f0ffSBarry Smith Options Database Key: 159811a5261eSBarry Smith . -mat_type mpidense - sets the matrix type to `MATMPIDENSE` during a call to `MatSetFromOptions()` 1599002bc6daSRichard Tran Mills 1600002bc6daSRichard Tran Mills Level: beginner 1601002bc6daSRichard Tran Mills 1602*1cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateDense()`, `MATSEQDENSE`, `MATDENSE` 1603002bc6daSRichard Tran Mills M*/ 16044742e46bSJacob Faibussowitsch PetscErrorCode MatCreate_MPIDense(Mat mat) 1605d71ae5a4SJacob Faibussowitsch { 1606273d9f13SBarry Smith Mat_MPIDense *a; 1607273d9f13SBarry Smith 1608273d9f13SBarry Smith PetscFunctionBegin; 16094dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&a)); 1610b0a32e0cSBarry Smith mat->data = (void *)a; 16119566063dSJacob Faibussowitsch PetscCall(PetscMemcpy(mat->ops, &MatOps_Values, sizeof(struct _MatOps))); 1612273d9f13SBarry Smith 1613273d9f13SBarry Smith mat->insertmode = NOT_SET_VALUES; 1614273d9f13SBarry Smith 1615273d9f13SBarry Smith /* build cache for off array entries formed */ 1616273d9f13SBarry Smith a->donotstash = PETSC_FALSE; 16172205254eSKarl Rupp 16189566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)mat), 1, &mat->stash)); 1619273d9f13SBarry Smith 1620273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 1621f4259b30SLisandro Dalcin a->lvec = NULL; 1622f4259b30SLisandro Dalcin a->Mvctx = NULL; 1623273d9f13SBarry Smith a->roworiented = PETSC_TRUE; 1624273d9f13SBarry Smith 16259566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetLDA_C", MatDenseGetLDA_MPIDense)); 16269566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseSetLDA_C", MatDenseSetLDA_MPIDense)); 16279566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetArray_C", MatDenseGetArray_MPIDense)); 16289566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreArray_C", MatDenseRestoreArray_MPIDense)); 16299566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetArrayRead_C", MatDenseGetArrayRead_MPIDense)); 16309566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreArrayRead_C", MatDenseRestoreArrayRead_MPIDense)); 16319566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetArrayWrite_C", MatDenseGetArrayWrite_MPIDense)); 16329566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreArrayWrite_C", MatDenseRestoreArrayWrite_MPIDense)); 16339566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDensePlaceArray_C", MatDensePlaceArray_MPIDense)); 16349566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseResetArray_C", MatDenseResetArray_MPIDense)); 16359566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseReplaceArray_C", MatDenseReplaceArray_MPIDense)); 16369566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVec_C", MatDenseGetColumnVec_MPIDense)); 16379566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVec_C", MatDenseRestoreColumnVec_MPIDense)); 16389566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVecRead_C", MatDenseGetColumnVecRead_MPIDense)); 16399566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVecRead_C", MatDenseRestoreColumnVecRead_MPIDense)); 16409566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVecWrite_C", MatDenseGetColumnVecWrite_MPIDense)); 16419566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVecWrite_C", MatDenseRestoreColumnVecWrite_MPIDense)); 16429566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetSubMatrix_C", MatDenseGetSubMatrix_MPIDense)); 16439566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreSubMatrix_C", MatDenseRestoreSubMatrix_MPIDense)); 16449566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpidense_C", MatConvert_MPIAIJ_MPIDense)); 16459566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_mpiaij_C", MatConvert_MPIDense_MPIAIJ)); 16468baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 16479566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_elemental_C", MatConvert_MPIDense_Elemental)); 16488baccfbdSHong Zhang #endif 1649d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 16509566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_scalapack_C", MatConvert_Dense_ScaLAPACK)); 1651d24d4204SJose E. Roman #endif 1652637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 16539566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_mpidensecuda_C", MatConvert_MPIDense_MPIDenseCUDA)); 1654637a0070SStefano Zampini #endif 16559566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIDenseSetPreallocation_C", MatMPIDenseSetPreallocation_MPIDense)); 16569566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpidense_C", MatProductSetFromOptions_MPIAIJ_MPIDense)); 16579566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidense_mpiaij_C", MatProductSetFromOptions_MPIDense_MPIAIJ)); 16586718818eSStefano Zampini #if defined(PETSC_HAVE_CUDA) 16599566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaijcusparse_mpidense_C", MatProductSetFromOptions_MPIAIJ_MPIDense)); 16609566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidense_mpiaijcusparse_C", MatProductSetFromOptions_MPIDense_MPIAIJ)); 16616718818eSStefano Zampini #endif 166247d993e7Ssuyashtn #if defined(PETSC_HAVE_HIP) 166347d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_mpidensehip_C", MatConvert_MPIDense_MPIDenseHIP)); 166447d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaijhipsparse_mpidense_C", MatProductSetFromOptions_MPIAIJ_MPIDense)); 166547d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidense_mpiaijhipsparse_C", MatProductSetFromOptions_MPIDense_MPIAIJ)); 166647d993e7Ssuyashtn #endif 16679566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumn_C", MatDenseGetColumn_MPIDense)); 16689566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumn_C", MatDenseRestoreColumn_MPIDense)); 16699566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)mat, MATMPIDENSE)); 16703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1671273d9f13SBarry Smith } 1672273d9f13SBarry Smith 1673209238afSKris Buschelman /*MC 1674002d173eSKris Buschelman MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices. 1675209238afSKris Buschelman 167611a5261eSBarry Smith This matrix type is identical to `MATSEQDENSE` when constructed with a single process communicator, 167711a5261eSBarry Smith and `MATMPIDENSE` otherwise. 1678209238afSKris Buschelman 16792ef1f0ffSBarry Smith Options Database Key: 168011a5261eSBarry Smith . -mat_type dense - sets the matrix type to `MATDENSE` during a call to `MatSetFromOptions()` 1681209238afSKris Buschelman 1682209238afSKris Buschelman Level: beginner 1683209238afSKris Buschelman 1684*1cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQDENSE`, `MATMPIDENSE`, `MATDENSECUDA`, `MATDENSEHIP` 16856947451fSStefano Zampini M*/ 16866947451fSStefano Zampini 1687273d9f13SBarry Smith /*@C 1688273d9f13SBarry Smith MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries 1689273d9f13SBarry Smith 16908f490ea3SStefano Zampini Collective 1691273d9f13SBarry Smith 1692273d9f13SBarry Smith Input Parameters: 16931c4f3114SJed Brown . B - the matrix 16942ef1f0ffSBarry Smith - data - optional location of matrix data. Set to `NULL` for PETSc 1695273d9f13SBarry Smith to control all matrix memory allocation. 1696273d9f13SBarry Smith 16972ef1f0ffSBarry Smith Level: intermediate 16982ef1f0ffSBarry Smith 1699273d9f13SBarry Smith Notes: 17002ef1f0ffSBarry Smith The dense format is fully compatible with standard Fortran 1701273d9f13SBarry Smith storage by columns. 1702273d9f13SBarry Smith 1703273d9f13SBarry Smith The data input variable is intended primarily for Fortran programmers 1704273d9f13SBarry Smith who wish to allocate their own matrix memory space. Most users should 17052ef1f0ffSBarry Smith set `data` to `NULL`. 1706273d9f13SBarry Smith 1707*1cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIDENSE`, `MatCreate()`, `MatCreateSeqDense()`, `MatSetValues()` 1708273d9f13SBarry Smith @*/ 1709d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIDenseSetPreallocation(Mat B, PetscScalar *data) 1710d71ae5a4SJacob Faibussowitsch { 1711273d9f13SBarry Smith PetscFunctionBegin; 1712d5ea218eSStefano Zampini PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 1713cac4c232SBarry Smith PetscTryMethod(B, "MatMPIDenseSetPreallocation_C", (Mat, PetscScalar *), (B, data)); 17143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1715273d9f13SBarry Smith } 1716273d9f13SBarry Smith 1717d3042a70SBarry Smith /*@ 171811a5261eSBarry Smith MatDensePlaceArray - Allows one to replace the array in a `MATDENSE` matrix with an 1719d3042a70SBarry Smith array provided by the user. This is useful to avoid copying an array 1720d3042a70SBarry Smith into a matrix 1721d3042a70SBarry Smith 1722d3042a70SBarry Smith Not Collective 1723d3042a70SBarry Smith 1724d3042a70SBarry Smith Input Parameters: 1725d3042a70SBarry Smith + mat - the matrix 1726d3042a70SBarry Smith - array - the array in column major order 1727d3042a70SBarry Smith 17282ef1f0ffSBarry Smith Level: developer 17292ef1f0ffSBarry Smith 173011a5261eSBarry Smith Note: 173111a5261eSBarry Smith You can return to the original array with a call to `MatDenseResetArray()`. The user is responsible for freeing this array; it will not be 1732d3042a70SBarry Smith freed when the matrix is destroyed. 1733d3042a70SBarry Smith 1734*1cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MatDenseGetArray()`, `MatDenseResetArray()`, `VecPlaceArray()`, `VecGetArray()`, `VecRestoreArray()`, `VecReplaceArray()`, `VecResetArray()`, 173511a5261eSBarry Smith `MatDenseReplaceArray()` 1736d3042a70SBarry Smith @*/ 1737d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDensePlaceArray(Mat mat, const PetscScalar *array) 1738d71ae5a4SJacob Faibussowitsch { 1739d3042a70SBarry Smith PetscFunctionBegin; 1740d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 1741cac4c232SBarry Smith PetscUseMethod(mat, "MatDensePlaceArray_C", (Mat, const PetscScalar *), (mat, array)); 17429566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 174347d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) 1744637a0070SStefano Zampini mat->offloadmask = PETSC_OFFLOAD_CPU; 1745637a0070SStefano Zampini #endif 17463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1747d3042a70SBarry Smith } 1748d3042a70SBarry Smith 1749d3042a70SBarry Smith /*@ 175011a5261eSBarry Smith MatDenseResetArray - Resets the matrix array to that it previously had before the call to `MatDensePlaceArray()` 1751d3042a70SBarry Smith 1752d3042a70SBarry Smith Not Collective 1753d3042a70SBarry Smith 17542fe279fdSBarry Smith Input Parameter: 1755d3042a70SBarry Smith . mat - the matrix 1756d3042a70SBarry Smith 17572ef1f0ffSBarry Smith Level: developer 17582ef1f0ffSBarry Smith 175911a5261eSBarry Smith Note: 176011a5261eSBarry Smith You can only call this after a call to `MatDensePlaceArray()` 1761d3042a70SBarry Smith 1762*1cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MatDenseGetArray()`, `MatDensePlaceArray()`, `VecPlaceArray()`, `VecGetArray()`, `VecRestoreArray()`, `VecReplaceArray()`, `VecResetArray()` 1763d3042a70SBarry Smith @*/ 1764d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseResetArray(Mat mat) 1765d71ae5a4SJacob Faibussowitsch { 1766d3042a70SBarry Smith PetscFunctionBegin; 1767d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 1768cac4c232SBarry Smith PetscUseMethod(mat, "MatDenseResetArray_C", (Mat), (mat)); 17699566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 17703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1771d3042a70SBarry Smith } 1772d3042a70SBarry Smith 1773d5ea218eSStefano Zampini /*@ 1774d5ea218eSStefano Zampini MatDenseReplaceArray - Allows one to replace the array in a dense matrix with an 1775d5ea218eSStefano Zampini array provided by the user. This is useful to avoid copying an array 1776d5ea218eSStefano Zampini into a matrix 1777d5ea218eSStefano Zampini 1778d5ea218eSStefano Zampini Not Collective 1779d5ea218eSStefano Zampini 1780d5ea218eSStefano Zampini Input Parameters: 1781d5ea218eSStefano Zampini + mat - the matrix 1782d5ea218eSStefano Zampini - array - the array in column major order 1783d5ea218eSStefano Zampini 17842ef1f0ffSBarry Smith Level: developer 17852ef1f0ffSBarry Smith 178611a5261eSBarry Smith Note: 178711a5261eSBarry Smith The memory passed in MUST be obtained with `PetscMalloc()` and CANNOT be 1788d5ea218eSStefano Zampini freed by the user. It will be freed when the matrix is destroyed. 1789d5ea218eSStefano Zampini 1790*1cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatDensePlaceArray()`, `MatDenseGetArray()`, `VecReplaceArray()` 1791d5ea218eSStefano Zampini @*/ 1792d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseReplaceArray(Mat mat, const PetscScalar *array) 1793d71ae5a4SJacob Faibussowitsch { 1794d5ea218eSStefano Zampini PetscFunctionBegin; 1795d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 1796cac4c232SBarry Smith PetscUseMethod(mat, "MatDenseReplaceArray_C", (Mat, const PetscScalar *), (mat, array)); 17979566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 179847d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) 1799d5ea218eSStefano Zampini mat->offloadmask = PETSC_OFFLOAD_CPU; 1800d5ea218eSStefano Zampini #endif 18013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1802d5ea218eSStefano Zampini } 1803d5ea218eSStefano Zampini 1804637a0070SStefano Zampini /*@C 180511a5261eSBarry Smith MatCreateDense - Creates a matrix in `MATDENSE` format. 18068965ea79SLois Curfman McInnes 1807d083f849SBarry Smith Collective 1808db81eaa0SLois Curfman McInnes 18098965ea79SLois Curfman McInnes Input Parameters: 1810db81eaa0SLois Curfman McInnes + comm - MPI communicator 18112ef1f0ffSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if `M` is given) 18122ef1f0ffSBarry Smith . n - number of local columns (or `PETSC_DECIDE` to have calculated if `N` is given) 18132ef1f0ffSBarry Smith . M - number of global rows (or `PETSC_DECIDE` to have calculated if `m` is given) 18142ef1f0ffSBarry Smith . N - number of global columns (or `PETSC_DECIDE` to have calculated if `n` is given) 18152ef1f0ffSBarry Smith - data - optional location of matrix data. Set data to `NULL` (`PETSC_NULL_SCALAR` for Fortran users) for PETSc 1816dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 18178965ea79SLois Curfman McInnes 18188965ea79SLois Curfman McInnes Output Parameter: 1819477f1c0bSLois Curfman McInnes . A - the matrix 18208965ea79SLois Curfman McInnes 18212ef1f0ffSBarry Smith Level: intermediate 18222ef1f0ffSBarry Smith 1823b259b22eSLois Curfman McInnes Notes: 18242ef1f0ffSBarry Smith The dense format is fully compatible with standard Fortran 182539ddd567SLois Curfman McInnes storage by columns. 182611a5261eSBarry Smith 182711a5261eSBarry Smith Although local portions of the matrix are stored in column-major 1828002bc6daSRichard Tran Mills order, the matrix is partitioned across MPI ranks by row. 18298965ea79SLois Curfman McInnes 183018f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 183118f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 18322ef1f0ffSBarry Smith set `data` to `NULL` (`PETSC_NULL_SCALAR` for Fortran users). 183318f449edSLois Curfman McInnes 18348965ea79SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 18358965ea79SLois Curfman McInnes (possibly both). 18368965ea79SLois Curfman McInnes 1837*1cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MatCreate()`, `MatCreateSeqDense()`, `MatSetValues()` 18388965ea79SLois Curfman McInnes @*/ 1839d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateDense(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscScalar *data, Mat *A) 1840d71ae5a4SJacob Faibussowitsch { 18413a40ed3dSBarry Smith PetscFunctionBegin; 18429566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 18439566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 18446f08ad05SPierre Jolivet PetscCall(MatSetType(*A, MATDENSE)); 18459566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(*A, data)); 18466f08ad05SPierre Jolivet PetscCall(MatMPIDenseSetPreallocation(*A, data)); 18473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18488965ea79SLois Curfman McInnes } 18498965ea79SLois Curfman McInnes 1850d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDuplicate_MPIDense(Mat A, MatDuplicateOption cpvalues, Mat *newmat) 1851d71ae5a4SJacob Faibussowitsch { 18528965ea79SLois Curfman McInnes Mat mat; 18533501a2bdSLois Curfman McInnes Mat_MPIDense *a, *oldmat = (Mat_MPIDense *)A->data; 18548965ea79SLois Curfman McInnes 18553a40ed3dSBarry Smith PetscFunctionBegin; 1856f4259b30SLisandro Dalcin *newmat = NULL; 18579566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &mat)); 18589566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N)); 18599566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)A)->type_name)); 1860834f8fabSBarry Smith a = (Mat_MPIDense *)mat->data; 18615aa7edbeSHong Zhang 1862d5f3da31SBarry Smith mat->factortype = A->factortype; 1863c456f294SBarry Smith mat->assembled = PETSC_TRUE; 1864273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 18658965ea79SLois Curfman McInnes 1866e0fa3b82SLois Curfman McInnes mat->insertmode = NOT_SET_VALUES; 18673782ba37SSatish Balay a->donotstash = oldmat->donotstash; 1868e04c1aa4SHong Zhang 18699566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->rmap, &mat->rmap)); 18709566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->cmap, &mat->cmap)); 18718965ea79SLois Curfman McInnes 18729566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 187301b82886SBarry Smith 18748965ea79SLois Curfman McInnes *newmat = mat; 18753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18768965ea79SLois Curfman McInnes } 18778965ea79SLois Curfman McInnes 1878d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIDense(Mat newMat, PetscViewer viewer) 1879d71ae5a4SJacob Faibussowitsch { 188087d5ce66SSatish Balay PetscBool isbinary; 188187d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 188287d5ce66SSatish Balay PetscBool ishdf5; 188387d5ce66SSatish Balay #endif 1884eb91f321SVaclav Hapla 1885eb91f321SVaclav Hapla PetscFunctionBegin; 1886eb91f321SVaclav Hapla PetscValidHeaderSpecific(newMat, MAT_CLASSID, 1); 1887eb91f321SVaclav Hapla PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 1888eb91f321SVaclav Hapla /* force binary viewer to load .info file if it has not yet done so */ 18899566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 18909566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 189187d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 18929566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 189387d5ce66SSatish Balay #endif 1894eb91f321SVaclav Hapla if (isbinary) { 18959566063dSJacob Faibussowitsch PetscCall(MatLoad_Dense_Binary(newMat, viewer)); 1896eb91f321SVaclav Hapla #if defined(PETSC_HAVE_HDF5) 189787d5ce66SSatish Balay } else if (ishdf5) { 18989566063dSJacob Faibussowitsch PetscCall(MatLoad_Dense_HDF5(newMat, viewer)); 1899eb91f321SVaclav Hapla #endif 190098921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)newMat)->type_name); 19013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1902eb91f321SVaclav Hapla } 1903eb91f321SVaclav Hapla 1904d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatEqual_MPIDense(Mat A, Mat B, PetscBool *flag) 1905d71ae5a4SJacob Faibussowitsch { 19066e4ee0c6SHong Zhang Mat_MPIDense *matB = (Mat_MPIDense *)B->data, *matA = (Mat_MPIDense *)A->data; 19076e4ee0c6SHong Zhang Mat a, b; 190890ace30eSBarry Smith 19096e4ee0c6SHong Zhang PetscFunctionBegin; 19106e4ee0c6SHong Zhang a = matA->A; 19116e4ee0c6SHong Zhang b = matB->A; 19122cf15c64SPierre Jolivet PetscCall(MatEqual(a, b, flag)); 19132cf15c64SPierre Jolivet PetscCall(MPIU_Allreduce(MPI_IN_PLACE, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 19143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 19156e4ee0c6SHong Zhang } 191690ace30eSBarry Smith 1917d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDestroy_MatTransMatMult_MPIDense_MPIDense(void *data) 1918d71ae5a4SJacob Faibussowitsch { 19196718818eSStefano Zampini Mat_TransMatMultDense *atb = (Mat_TransMatMultDense *)data; 1920baa3c1c6SHong Zhang 1921baa3c1c6SHong Zhang PetscFunctionBegin; 19229566063dSJacob Faibussowitsch PetscCall(PetscFree2(atb->sendbuf, atb->recvcounts)); 19239566063dSJacob Faibussowitsch PetscCall(MatDestroy(&atb->atb)); 19249566063dSJacob Faibussowitsch PetscCall(PetscFree(atb)); 19253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1926baa3c1c6SHong Zhang } 1927baa3c1c6SHong Zhang 1928d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDestroy_MatMatTransMult_MPIDense_MPIDense(void *data) 1929d71ae5a4SJacob Faibussowitsch { 19306718818eSStefano Zampini Mat_MatTransMultDense *abt = (Mat_MatTransMultDense *)data; 1931cc48ffa7SToby Isaac 1932cc48ffa7SToby Isaac PetscFunctionBegin; 19339566063dSJacob Faibussowitsch PetscCall(PetscFree2(abt->buf[0], abt->buf[1])); 19349566063dSJacob Faibussowitsch PetscCall(PetscFree2(abt->recvcounts, abt->recvdispls)); 19359566063dSJacob Faibussowitsch PetscCall(PetscFree(abt)); 19363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1937cc48ffa7SToby Isaac } 1938cc48ffa7SToby Isaac 1939d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat A, Mat B, Mat C) 1940d71ae5a4SJacob Faibussowitsch { 1941baa3c1c6SHong Zhang Mat_MPIDense *a = (Mat_MPIDense *)A->data, *b = (Mat_MPIDense *)B->data, *c = (Mat_MPIDense *)C->data; 19426718818eSStefano Zampini Mat_TransMatMultDense *atb; 1943cb20be35SHong Zhang MPI_Comm comm; 19446718818eSStefano Zampini PetscMPIInt size, *recvcounts; 19456718818eSStefano Zampini PetscScalar *carray, *sendbuf; 1946637a0070SStefano Zampini const PetscScalar *atbarray; 1947a1f9a5e6SStefano Zampini PetscInt i, cN = C->cmap->N, proc, k, j, lda; 1948e68c0b26SHong Zhang const PetscInt *ranges; 1949cb20be35SHong Zhang 1950cb20be35SHong Zhang PetscFunctionBegin; 19516718818eSStefano Zampini MatCheckProduct(C, 3); 19525f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 19536718818eSStefano Zampini atb = (Mat_TransMatMultDense *)C->product->data; 19546718818eSStefano Zampini recvcounts = atb->recvcounts; 19556718818eSStefano Zampini sendbuf = atb->sendbuf; 19566718818eSStefano Zampini 19579566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 19589566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 1959e68c0b26SHong Zhang 1960c5ef1628SHong Zhang /* compute atbarray = aseq^T * bseq */ 19619566063dSJacob Faibussowitsch PetscCall(MatTransposeMatMult(a->A, b->A, atb->atb ? MAT_REUSE_MATRIX : MAT_INITIAL_MATRIX, PETSC_DEFAULT, &atb->atb)); 1962cb20be35SHong Zhang 19639566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRanges(C, &ranges)); 1964cb20be35SHong Zhang 1965660d5466SHong Zhang /* arrange atbarray into sendbuf */ 19669566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(atb->atb, &atbarray)); 19679566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(atb->atb, &lda)); 1968637a0070SStefano Zampini for (proc = 0, k = 0; proc < size; proc++) { 1969baa3c1c6SHong Zhang for (j = 0; j < cN; j++) { 1970a1f9a5e6SStefano Zampini for (i = ranges[proc]; i < ranges[proc + 1]; i++) sendbuf[k++] = atbarray[i + j * lda]; 1971cb20be35SHong Zhang } 1972cb20be35SHong Zhang } 19739566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(atb->atb, &atbarray)); 1974637a0070SStefano Zampini 1975c5ef1628SHong Zhang /* sum all atbarray to local values of C */ 19769566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(c->A, &carray)); 19779566063dSJacob Faibussowitsch PetscCallMPI(MPI_Reduce_scatter(sendbuf, carray, recvcounts, MPIU_SCALAR, MPIU_SUM, comm)); 19789566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(c->A, &carray)); 19799566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 19809566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 19813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1982cb20be35SHong Zhang } 1983cb20be35SHong Zhang 1984d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat A, Mat B, PetscReal fill, Mat C) 1985d71ae5a4SJacob Faibussowitsch { 1986cb20be35SHong Zhang MPI_Comm comm; 1987baa3c1c6SHong Zhang PetscMPIInt size; 1988660d5466SHong Zhang PetscInt cm = A->cmap->n, cM, cN = B->cmap->N; 1989baa3c1c6SHong Zhang Mat_TransMatMultDense *atb; 199047d993e7Ssuyashtn PetscBool cisdense = PETSC_FALSE; 19910acaeb71SStefano Zampini PetscInt i; 19920acaeb71SStefano Zampini const PetscInt *ranges; 1993cb20be35SHong Zhang 1994cb20be35SHong Zhang PetscFunctionBegin; 19958f83a4d9SJacob Faibussowitsch MatCheckProduct(C, 4); 19965f80ce2aSJacob Faibussowitsch PetscCheck(!C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty"); 19979566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 1998cb20be35SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) { 199998921bdaSJacob Faibussowitsch SETERRQ(comm, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != B (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->rstart, A->rmap->rend, B->rmap->rstart, B->rmap->rend); 2000cb20be35SHong Zhang } 2001cb20be35SHong Zhang 20024222ddf1SHong Zhang /* create matrix product C */ 20039566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, cm, B->cmap->n, A->cmap->N, B->cmap->N)); 200447d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) 20059566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATMPIDENSE, MATMPIDENSECUDA, "")); 200647d993e7Ssuyashtn #endif 200747d993e7Ssuyashtn #if defined(PETSC_HAVE_HIP) 200847d993e7Ssuyashtn PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATMPIDENSE, MATMPIDENSEHIP, "")); 200947d993e7Ssuyashtn #endif 201048a46eb9SPierre Jolivet if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)A)->type_name)); 20119566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 2012baa3c1c6SHong Zhang 20134222ddf1SHong Zhang /* create data structure for reuse C */ 20149566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 20159566063dSJacob Faibussowitsch PetscCall(PetscNew(&atb)); 20164222ddf1SHong Zhang cM = C->rmap->N; 20179566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(cM * cN, &atb->sendbuf, size, &atb->recvcounts)); 20189566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRanges(C, &ranges)); 20190acaeb71SStefano Zampini for (i = 0; i < size; i++) atb->recvcounts[i] = (ranges[i + 1] - ranges[i]) * cN; 2020baa3c1c6SHong Zhang 20216718818eSStefano Zampini C->product->data = atb; 20226718818eSStefano Zampini C->product->destroy = MatDestroy_MatTransMatMult_MPIDense_MPIDense; 20233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2024cb20be35SHong Zhang } 2025cb20be35SHong Zhang 2026d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat A, Mat B, PetscReal fill, Mat C) 2027d71ae5a4SJacob Faibussowitsch { 2028cc48ffa7SToby Isaac MPI_Comm comm; 2029cc48ffa7SToby Isaac PetscMPIInt i, size; 2030cc48ffa7SToby Isaac PetscInt maxRows, bufsiz; 2031cc48ffa7SToby Isaac PetscMPIInt tag; 20324222ddf1SHong Zhang PetscInt alg; 2033cc48ffa7SToby Isaac Mat_MatTransMultDense *abt; 20344222ddf1SHong Zhang Mat_Product *product = C->product; 20354222ddf1SHong Zhang PetscBool flg; 2036cc48ffa7SToby Isaac 2037cc48ffa7SToby Isaac PetscFunctionBegin; 20386718818eSStefano Zampini MatCheckProduct(C, 4); 20395f80ce2aSJacob Faibussowitsch PetscCheck(!C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty"); 20404222ddf1SHong Zhang /* check local size of A and B */ 20415f80ce2aSJacob Faibussowitsch PetscCheck(A->cmap->n == B->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local column dimensions are incompatible, A (%" PetscInt_FMT ") != B (%" PetscInt_FMT ")", A->cmap->n, B->cmap->n); 2042cc48ffa7SToby Isaac 20439566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg, "allgatherv", &flg)); 2044637a0070SStefano Zampini alg = flg ? 0 : 1; 2045cc48ffa7SToby Isaac 20464222ddf1SHong Zhang /* setup matrix product C */ 20479566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, A->rmap->n, B->rmap->n, A->rmap->N, B->rmap->N)); 20489566063dSJacob Faibussowitsch PetscCall(MatSetType(C, MATMPIDENSE)); 20499566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 20509566063dSJacob Faibussowitsch PetscCall(PetscObjectGetNewTag((PetscObject)C, &tag)); 20514222ddf1SHong Zhang 20524222ddf1SHong Zhang /* create data structure for reuse C */ 20539566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C, &comm)); 20549566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 20559566063dSJacob Faibussowitsch PetscCall(PetscNew(&abt)); 2056cc48ffa7SToby Isaac abt->tag = tag; 2057faa55883SToby Isaac abt->alg = alg; 2058faa55883SToby Isaac switch (alg) { 20594222ddf1SHong Zhang case 1: /* alg: "cyclic" */ 2060cc48ffa7SToby Isaac for (maxRows = 0, i = 0; i < size; i++) maxRows = PetscMax(maxRows, (B->rmap->range[i + 1] - B->rmap->range[i])); 2061cc48ffa7SToby Isaac bufsiz = A->cmap->N * maxRows; 20629566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(bufsiz, &(abt->buf[0]), bufsiz, &(abt->buf[1]))); 2063faa55883SToby Isaac break; 20644222ddf1SHong Zhang default: /* alg: "allgatherv" */ 20659566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(B->rmap->n * B->cmap->N, &(abt->buf[0]), B->rmap->N * B->cmap->N, &(abt->buf[1]))); 20669566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(size, &(abt->recvcounts), size + 1, &(abt->recvdispls))); 2067faa55883SToby Isaac for (i = 0; i <= size; i++) abt->recvdispls[i] = B->rmap->range[i] * A->cmap->N; 2068faa55883SToby Isaac for (i = 0; i < size; i++) abt->recvcounts[i] = abt->recvdispls[i + 1] - abt->recvdispls[i]; 2069faa55883SToby Isaac break; 2070faa55883SToby Isaac } 2071cc48ffa7SToby Isaac 20726718818eSStefano Zampini C->product->data = abt; 20736718818eSStefano Zampini C->product->destroy = MatDestroy_MatMatTransMult_MPIDense_MPIDense; 20744222ddf1SHong Zhang C->ops->mattransposemultnumeric = MatMatTransposeMultNumeric_MPIDense_MPIDense; 20753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2076cc48ffa7SToby Isaac } 2077cc48ffa7SToby Isaac 2078d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(Mat A, Mat B, Mat C) 2079d71ae5a4SJacob Faibussowitsch { 2080cc48ffa7SToby Isaac Mat_MPIDense *a = (Mat_MPIDense *)A->data, *b = (Mat_MPIDense *)B->data, *c = (Mat_MPIDense *)C->data; 20816718818eSStefano Zampini Mat_MatTransMultDense *abt; 2082cc48ffa7SToby Isaac MPI_Comm comm; 2083cc48ffa7SToby Isaac PetscMPIInt rank, size, sendsiz, recvsiz, sendto, recvfrom, recvisfrom; 2084f4259b30SLisandro Dalcin PetscScalar *sendbuf, *recvbuf = NULL, *cv; 2085cc48ffa7SToby Isaac PetscInt i, cK = A->cmap->N, k, j, bn; 2086cc48ffa7SToby Isaac PetscScalar _DOne = 1.0, _DZero = 0.0; 2087637a0070SStefano Zampini const PetscScalar *av, *bv; 208823fff9afSBarry Smith PetscBLASInt cm, cn, ck, alda, blda = 0, clda; 2089cc48ffa7SToby Isaac MPI_Request reqs[2]; 2090cc48ffa7SToby Isaac const PetscInt *ranges; 2091cc48ffa7SToby Isaac 2092cc48ffa7SToby Isaac PetscFunctionBegin; 20936718818eSStefano Zampini MatCheckProduct(C, 3); 20945f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 20956718818eSStefano Zampini abt = (Mat_MatTransMultDense *)C->product->data; 20969566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C, &comm)); 20979566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 20989566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 20999566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A, &av)); 21009566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(b->A, &bv)); 21019566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(c->A, &cv)); 21029566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &i)); 21039566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i, &alda)); 21049566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(b->A, &i)); 21059566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i, &blda)); 21069566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(c->A, &i)); 21079566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i, &clda)); 21089566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRanges(B, &ranges)); 2109cc48ffa7SToby Isaac bn = B->rmap->n; 2110637a0070SStefano Zampini if (blda == bn) { 2111637a0070SStefano Zampini sendbuf = (PetscScalar *)bv; 2112cc48ffa7SToby Isaac } else { 2113cc48ffa7SToby Isaac sendbuf = abt->buf[0]; 2114cc48ffa7SToby Isaac for (k = 0, i = 0; i < cK; i++) { 2115ad540459SPierre Jolivet for (j = 0; j < bn; j++, k++) sendbuf[k] = bv[i * blda + j]; 2116cc48ffa7SToby Isaac } 2117cc48ffa7SToby Isaac } 2118cc48ffa7SToby Isaac if (size > 1) { 2119cc48ffa7SToby Isaac sendto = (rank + size - 1) % size; 2120cc48ffa7SToby Isaac recvfrom = (rank + size + 1) % size; 2121cc48ffa7SToby Isaac } else { 2122cc48ffa7SToby Isaac sendto = recvfrom = 0; 2123cc48ffa7SToby Isaac } 21249566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(cK, &ck)); 21259566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(c->A->rmap->n, &cm)); 2126cc48ffa7SToby Isaac recvisfrom = rank; 2127cc48ffa7SToby Isaac for (i = 0; i < size; i++) { 2128cc48ffa7SToby Isaac /* we have finished receiving in sending, bufs can be read/modified */ 2129cc48ffa7SToby Isaac PetscInt nextrecvisfrom = (recvisfrom + 1) % size; /* which process the next recvbuf will originate on */ 2130cc48ffa7SToby Isaac PetscInt nextbn = ranges[nextrecvisfrom + 1] - ranges[nextrecvisfrom]; 2131cc48ffa7SToby Isaac 2132cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2133cc48ffa7SToby Isaac /* start the cyclic sends from sendbuf, to recvbuf (which will switch to sendbuf) */ 2134cc48ffa7SToby Isaac sendsiz = cK * bn; 2135cc48ffa7SToby Isaac recvsiz = cK * nextbn; 2136cc48ffa7SToby Isaac recvbuf = (i & 1) ? abt->buf[0] : abt->buf[1]; 21379566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(sendbuf, sendsiz, MPIU_SCALAR, sendto, abt->tag, comm, &reqs[0])); 21389566063dSJacob Faibussowitsch PetscCallMPI(MPI_Irecv(recvbuf, recvsiz, MPIU_SCALAR, recvfrom, abt->tag, comm, &reqs[1])); 2139cc48ffa7SToby Isaac } 2140cc48ffa7SToby Isaac 2141cc48ffa7SToby Isaac /* local aseq * sendbuf^T */ 21429566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(ranges[recvisfrom + 1] - ranges[recvisfrom], &cn)); 2143792fecdfSBarry Smith if (cm && cn && ck) PetscCallBLAS("BLASgemm", BLASgemm_("N", "T", &cm, &cn, &ck, &_DOne, av, &alda, sendbuf, &cn, &_DZero, cv + clda * ranges[recvisfrom], &clda)); 2144cc48ffa7SToby Isaac 2145cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2146cc48ffa7SToby Isaac /* wait for the sends and receives to complete, swap sendbuf and recvbuf */ 21479566063dSJacob Faibussowitsch PetscCallMPI(MPI_Waitall(2, reqs, MPI_STATUSES_IGNORE)); 2148cc48ffa7SToby Isaac } 2149cc48ffa7SToby Isaac bn = nextbn; 2150cc48ffa7SToby Isaac recvisfrom = nextrecvisfrom; 2151cc48ffa7SToby Isaac sendbuf = recvbuf; 2152cc48ffa7SToby Isaac } 21539566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A, &av)); 21549566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(b->A, &bv)); 21559566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(c->A, &cv)); 21569566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 21579566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 21583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2159cc48ffa7SToby Isaac } 2160cc48ffa7SToby Isaac 2161d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(Mat A, Mat B, Mat C) 2162d71ae5a4SJacob Faibussowitsch { 2163faa55883SToby Isaac Mat_MPIDense *a = (Mat_MPIDense *)A->data, *b = (Mat_MPIDense *)B->data, *c = (Mat_MPIDense *)C->data; 21646718818eSStefano Zampini Mat_MatTransMultDense *abt; 2165faa55883SToby Isaac MPI_Comm comm; 2166637a0070SStefano Zampini PetscMPIInt size; 2167637a0070SStefano Zampini PetscScalar *cv, *sendbuf, *recvbuf; 2168637a0070SStefano Zampini const PetscScalar *av, *bv; 2169637a0070SStefano Zampini PetscInt blda, i, cK = A->cmap->N, k, j, bn; 2170faa55883SToby Isaac PetscScalar _DOne = 1.0, _DZero = 0.0; 2171637a0070SStefano Zampini PetscBLASInt cm, cn, ck, alda, clda; 2172faa55883SToby Isaac 2173faa55883SToby Isaac PetscFunctionBegin; 21746718818eSStefano Zampini MatCheckProduct(C, 3); 21755f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 21766718818eSStefano Zampini abt = (Mat_MatTransMultDense *)C->product->data; 21779566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 21789566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 21799566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A, &av)); 21809566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(b->A, &bv)); 21819566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(c->A, &cv)); 21829566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &i)); 21839566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i, &alda)); 21849566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(b->A, &blda)); 21859566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(c->A, &i)); 21869566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i, &clda)); 2187faa55883SToby Isaac /* copy transpose of B into buf[0] */ 2188faa55883SToby Isaac bn = B->rmap->n; 2189faa55883SToby Isaac sendbuf = abt->buf[0]; 2190faa55883SToby Isaac recvbuf = abt->buf[1]; 2191faa55883SToby Isaac for (k = 0, j = 0; j < bn; j++) { 2192ad540459SPierre Jolivet for (i = 0; i < cK; i++, k++) sendbuf[k] = bv[i * blda + j]; 2193faa55883SToby Isaac } 21949566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(b->A, &bv)); 21959566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgatherv(sendbuf, bn * cK, MPIU_SCALAR, recvbuf, abt->recvcounts, abt->recvdispls, MPIU_SCALAR, comm)); 21969566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(cK, &ck)); 21979566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(c->A->rmap->n, &cm)); 21989566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(c->A->cmap->n, &cn)); 2199792fecdfSBarry Smith if (cm && cn && ck) PetscCallBLAS("BLASgemm", BLASgemm_("N", "N", &cm, &cn, &ck, &_DOne, av, &alda, recvbuf, &ck, &_DZero, cv, &clda)); 22009566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A, &av)); 22019566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(b->A, &bv)); 22029566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(c->A, &cv)); 22039566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 22049566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 22053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2206faa55883SToby Isaac } 2207faa55883SToby Isaac 2208d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat A, Mat B, Mat C) 2209d71ae5a4SJacob Faibussowitsch { 22106718818eSStefano Zampini Mat_MatTransMultDense *abt; 2211faa55883SToby Isaac 2212faa55883SToby Isaac PetscFunctionBegin; 22136718818eSStefano Zampini MatCheckProduct(C, 3); 22145f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 22156718818eSStefano Zampini abt = (Mat_MatTransMultDense *)C->product->data; 2216faa55883SToby Isaac switch (abt->alg) { 2217d71ae5a4SJacob Faibussowitsch case 1: 2218d71ae5a4SJacob Faibussowitsch PetscCall(MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(A, B, C)); 2219d71ae5a4SJacob Faibussowitsch break; 2220d71ae5a4SJacob Faibussowitsch default: 2221d71ae5a4SJacob Faibussowitsch PetscCall(MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(A, B, C)); 2222d71ae5a4SJacob Faibussowitsch break; 2223faa55883SToby Isaac } 22243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2225faa55883SToby Isaac } 2226faa55883SToby Isaac 2227d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDestroy_MatMatMult_MPIDense_MPIDense(void *data) 2228d71ae5a4SJacob Faibussowitsch { 22296718818eSStefano Zampini Mat_MatMultDense *ab = (Mat_MatMultDense *)data; 2230320f2790SHong Zhang 2231320f2790SHong Zhang PetscFunctionBegin; 22329566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ab->Ce)); 22339566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ab->Ae)); 22349566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ab->Be)); 22359566063dSJacob Faibussowitsch PetscCall(PetscFree(ab)); 22363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2237320f2790SHong Zhang } 2238320f2790SHong Zhang 22395242a7b1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 2240d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultNumeric_MPIDense_MPIDense(Mat A, Mat B, Mat C) 2241d71ae5a4SJacob Faibussowitsch { 22426718818eSStefano Zampini Mat_MatMultDense *ab; 2243320f2790SHong Zhang 2244320f2790SHong Zhang PetscFunctionBegin; 22456718818eSStefano Zampini MatCheckProduct(C, 3); 22465f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Missing product data"); 22476718818eSStefano Zampini ab = (Mat_MatMultDense *)C->product->data; 22489566063dSJacob Faibussowitsch PetscCall(MatConvert_MPIDense_Elemental(A, MATELEMENTAL, MAT_REUSE_MATRIX, &ab->Ae)); 22499566063dSJacob Faibussowitsch PetscCall(MatConvert_MPIDense_Elemental(B, MATELEMENTAL, MAT_REUSE_MATRIX, &ab->Be)); 22509566063dSJacob Faibussowitsch PetscCall(MatMatMultNumeric_Elemental(ab->Ae, ab->Be, ab->Ce)); 22519566063dSJacob Faibussowitsch PetscCall(MatConvert(ab->Ce, MATMPIDENSE, MAT_REUSE_MATRIX, &C)); 22523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2253320f2790SHong Zhang } 2254320f2790SHong Zhang 2255d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIDense(Mat A, Mat B, PetscReal fill, Mat C) 2256d71ae5a4SJacob Faibussowitsch { 2257320f2790SHong Zhang Mat Ae, Be, Ce; 2258320f2790SHong Zhang Mat_MatMultDense *ab; 2259320f2790SHong Zhang 2260320f2790SHong Zhang PetscFunctionBegin; 22616718818eSStefano Zampini MatCheckProduct(C, 4); 22625f80ce2aSJacob Faibussowitsch PetscCheck(!C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty"); 22634222ddf1SHong Zhang /* check local size of A and B */ 2264320f2790SHong Zhang if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend) { 226598921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != B (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->rstart, A->rmap->rend, B->rmap->rstart, B->rmap->rend); 2266320f2790SHong Zhang } 2267320f2790SHong Zhang 22684222ddf1SHong Zhang /* create elemental matrices Ae and Be */ 22699566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &Ae)); 22709566063dSJacob Faibussowitsch PetscCall(MatSetSizes(Ae, PETSC_DECIDE, PETSC_DECIDE, A->rmap->N, A->cmap->N)); 22719566063dSJacob Faibussowitsch PetscCall(MatSetType(Ae, MATELEMENTAL)); 22729566063dSJacob Faibussowitsch PetscCall(MatSetUp(Ae)); 22739566063dSJacob Faibussowitsch PetscCall(MatSetOption(Ae, MAT_ROW_ORIENTED, PETSC_FALSE)); 2274320f2790SHong Zhang 22759566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)B), &Be)); 22769566063dSJacob Faibussowitsch PetscCall(MatSetSizes(Be, PETSC_DECIDE, PETSC_DECIDE, B->rmap->N, B->cmap->N)); 22779566063dSJacob Faibussowitsch PetscCall(MatSetType(Be, MATELEMENTAL)); 22789566063dSJacob Faibussowitsch PetscCall(MatSetUp(Be)); 22799566063dSJacob Faibussowitsch PetscCall(MatSetOption(Be, MAT_ROW_ORIENTED, PETSC_FALSE)); 2280320f2790SHong Zhang 22814222ddf1SHong Zhang /* compute symbolic Ce = Ae*Be */ 22829566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)C), &Ce)); 22839566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_Elemental(Ae, Be, fill, Ce)); 22844222ddf1SHong Zhang 22854222ddf1SHong Zhang /* setup C */ 22869566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, A->rmap->n, B->cmap->n, PETSC_DECIDE, PETSC_DECIDE)); 22879566063dSJacob Faibussowitsch PetscCall(MatSetType(C, MATDENSE)); 22889566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 2289320f2790SHong Zhang 2290320f2790SHong Zhang /* create data structure for reuse Cdense */ 22919566063dSJacob Faibussowitsch PetscCall(PetscNew(&ab)); 2292320f2790SHong Zhang ab->Ae = Ae; 2293320f2790SHong Zhang ab->Be = Be; 2294320f2790SHong Zhang ab->Ce = Ce; 22956718818eSStefano Zampini 22966718818eSStefano Zampini C->product->data = ab; 22976718818eSStefano Zampini C->product->destroy = MatDestroy_MatMatMult_MPIDense_MPIDense; 22984222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIDense; 22993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2300320f2790SHong Zhang } 23014222ddf1SHong Zhang #endif 23022ef1f0ffSBarry Smith 23034222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 2304d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_AB(Mat C) 2305d71ae5a4SJacob Faibussowitsch { 2306320f2790SHong Zhang PetscFunctionBegin; 23074222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIDense; 23084222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 23093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2310320f2790SHong Zhang } 23115242a7b1SHong Zhang #endif 231286aefd0dSHong Zhang 2313d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_AtB(Mat C) 2314d71ae5a4SJacob Faibussowitsch { 23154222ddf1SHong Zhang Mat_Product *product = C->product; 23164222ddf1SHong Zhang Mat A = product->A, B = product->B; 23174222ddf1SHong Zhang 23184222ddf1SHong Zhang PetscFunctionBegin; 23194222ddf1SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) 232098921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->rstart, A->rmap->rend, B->rmap->rstart, B->rmap->rend); 23216718818eSStefano Zampini C->ops->transposematmultsymbolic = MatTransposeMatMultSymbolic_MPIDense_MPIDense; 23226718818eSStefano Zampini C->ops->productsymbolic = MatProductSymbolic_AtB; 23233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23244222ddf1SHong Zhang } 23254222ddf1SHong Zhang 2326d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_ABt(Mat C) 2327d71ae5a4SJacob Faibussowitsch { 23284222ddf1SHong Zhang Mat_Product *product = C->product; 23294222ddf1SHong Zhang const char *algTypes[2] = {"allgatherv", "cyclic"}; 23304222ddf1SHong Zhang PetscInt alg, nalg = 2; 23314222ddf1SHong Zhang PetscBool flg = PETSC_FALSE; 23324222ddf1SHong Zhang 23334222ddf1SHong Zhang PetscFunctionBegin; 23344222ddf1SHong Zhang /* Set default algorithm */ 23354222ddf1SHong Zhang alg = 0; /* default is allgatherv */ 23369566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg, "default", &flg)); 233748a46eb9SPierre Jolivet if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 23384222ddf1SHong Zhang 23394222ddf1SHong Zhang /* Get runtime option */ 23404222ddf1SHong Zhang if (product->api_user) { 2341d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatTransposeMult", "Mat"); 23429566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-matmattransmult_mpidense_mpidense_via", "Algorithmic approach", "MatMatTransposeMult", algTypes, nalg, algTypes[alg], &alg, &flg)); 2343d0609cedSBarry Smith PetscOptionsEnd(); 23444222ddf1SHong Zhang } else { 2345d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_ABt", "Mat"); 23469566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatProduct_ABt", algTypes, nalg, algTypes[alg], &alg, &flg)); 2347d0609cedSBarry Smith PetscOptionsEnd(); 23484222ddf1SHong Zhang } 234948a46eb9SPierre Jolivet if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 23504222ddf1SHong Zhang 23514222ddf1SHong Zhang C->ops->mattransposemultsymbolic = MatMatTransposeMultSymbolic_MPIDense_MPIDense; 23524222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_ABt; 23533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23544222ddf1SHong Zhang } 23554222ddf1SHong Zhang 2356d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense(Mat C) 2357d71ae5a4SJacob Faibussowitsch { 23584222ddf1SHong Zhang Mat_Product *product = C->product; 23594222ddf1SHong Zhang 23604222ddf1SHong Zhang PetscFunctionBegin; 23614222ddf1SHong Zhang switch (product->type) { 23624222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 2363d71ae5a4SJacob Faibussowitsch case MATPRODUCT_AB: 2364d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIDense_AB(C)); 2365d71ae5a4SJacob Faibussowitsch break; 23664222ddf1SHong Zhang #endif 2367d71ae5a4SJacob Faibussowitsch case MATPRODUCT_AtB: 2368d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIDense_AtB(C)); 2369d71ae5a4SJacob Faibussowitsch break; 2370d71ae5a4SJacob Faibussowitsch case MATPRODUCT_ABt: 2371d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIDense_ABt(C)); 2372d71ae5a4SJacob Faibussowitsch break; 2373d71ae5a4SJacob Faibussowitsch default: 2374d71ae5a4SJacob Faibussowitsch break; 23754222ddf1SHong Zhang } 23763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23774222ddf1SHong Zhang } 2378