1be1d678aSKris Buschelman 2ed3cc1f0SBarry Smith /* 3ed3cc1f0SBarry Smith Basic functions for basic parallel dense matrices. 4ed3cc1f0SBarry Smith */ 5ed3cc1f0SBarry Smith 6c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h> /*I "petscmat.h" I*/ 78949adfdSHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 8baa3c1c6SHong Zhang #include <petscblaslapack.h> 98965ea79SLois Curfman McInnes 10ab92ecdeSBarry Smith /*@ 11ab92ecdeSBarry Smith 12ab92ecdeSBarry Smith MatDenseGetLocalMatrix - For a MATMPIDENSE or MATSEQDENSE matrix returns the sequential 13ab92ecdeSBarry Smith matrix that represents the operator. For sequential matrices it returns itself. 14ab92ecdeSBarry Smith 15ab92ecdeSBarry Smith Input Parameter: 16ab92ecdeSBarry Smith . A - the Seq or MPI dense matrix 17ab92ecdeSBarry Smith 18ab92ecdeSBarry Smith Output Parameter: 19ab92ecdeSBarry Smith . B - the inner matrix 20ab92ecdeSBarry Smith 218e6c10adSSatish Balay Level: intermediate 228e6c10adSSatish Balay 23ab92ecdeSBarry Smith @*/ 24ab92ecdeSBarry Smith PetscErrorCode MatDenseGetLocalMatrix(Mat A,Mat *B) 25ab92ecdeSBarry Smith { 26ab92ecdeSBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 27ace3abfcSBarry Smith PetscBool flg; 28ab92ecdeSBarry Smith 29ab92ecdeSBarry Smith PetscFunctionBegin; 30d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 31d5ea218eSStefano Zampini PetscValidPointer(B,2); 325f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectBaseTypeCompare((PetscObject)A,MATMPIDENSE,&flg)); 332205254eSKarl Rupp if (flg) *B = mat->A; 34f140bc17SStefano Zampini else { 355f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectBaseTypeCompare((PetscObject)A,MATSEQDENSE,&flg)); 36*28b400f6SJacob Faibussowitsch PetscCheck(flg,PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Not for matrix type %s",((PetscObject)A)->type_name); 37f140bc17SStefano Zampini *B = A; 38f140bc17SStefano Zampini } 39ab92ecdeSBarry Smith PetscFunctionReturn(0); 40ab92ecdeSBarry Smith } 41ab92ecdeSBarry Smith 42a76f77c3SStefano Zampini PetscErrorCode MatCopy_MPIDense(Mat A, Mat B, MatStructure s) 43a76f77c3SStefano Zampini { 44a76f77c3SStefano Zampini Mat_MPIDense *Amat = (Mat_MPIDense*)A->data; 45a76f77c3SStefano Zampini Mat_MPIDense *Bmat = (Mat_MPIDense*)B->data; 46a76f77c3SStefano Zampini 47a76f77c3SStefano Zampini PetscFunctionBegin; 485f80ce2aSJacob Faibussowitsch CHKERRQ(MatCopy(Amat->A,Bmat->A,s)); 49a76f77c3SStefano Zampini PetscFunctionReturn(0); 50a76f77c3SStefano Zampini } 51a76f77c3SStefano Zampini 52ba8c8a56SBarry Smith PetscErrorCode MatGetRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 53ba8c8a56SBarry Smith { 54ba8c8a56SBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 55d0f46423SBarry Smith PetscInt lrow,rstart = A->rmap->rstart,rend = A->rmap->rend; 56ba8c8a56SBarry Smith 57ba8c8a56SBarry Smith PetscFunctionBegin; 582c71b3e2SJacob Faibussowitsch PetscCheckFalse(row < rstart || row >= rend,PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows"); 59ba8c8a56SBarry Smith lrow = row - rstart; 605f80ce2aSJacob Faibussowitsch CHKERRQ(MatGetRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v)); 61ba8c8a56SBarry Smith PetscFunctionReturn(0); 62ba8c8a56SBarry Smith } 63ba8c8a56SBarry Smith 64637a0070SStefano Zampini PetscErrorCode MatRestoreRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 65ba8c8a56SBarry Smith { 66637a0070SStefano Zampini Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 67637a0070SStefano Zampini PetscInt lrow,rstart = A->rmap->rstart,rend = A->rmap->rend; 68ba8c8a56SBarry Smith 69ba8c8a56SBarry Smith PetscFunctionBegin; 702c71b3e2SJacob Faibussowitsch PetscCheckFalse(row < rstart || row >= rend,PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows"); 71637a0070SStefano Zampini lrow = row - rstart; 725f80ce2aSJacob Faibussowitsch CHKERRQ(MatRestoreRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v)); 73ba8c8a56SBarry Smith PetscFunctionReturn(0); 74ba8c8a56SBarry Smith } 75ba8c8a56SBarry Smith 7611bd1e4dSLisandro Dalcin PetscErrorCode MatGetDiagonalBlock_MPIDense(Mat A,Mat *a) 770de54da6SSatish Balay { 780de54da6SSatish Balay Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 79d0f46423SBarry Smith PetscInt m = A->rmap->n,rstart = A->rmap->rstart; 8087828ca2SBarry Smith PetscScalar *array; 810de54da6SSatish Balay MPI_Comm comm; 824b6ae80fSStefano Zampini PetscBool flg; 8311bd1e4dSLisandro Dalcin Mat B; 840de54da6SSatish Balay 850de54da6SSatish Balay PetscFunctionBegin; 865f80ce2aSJacob Faibussowitsch CHKERRQ(MatHasCongruentLayouts(A,&flg)); 87*28b400f6SJacob Faibussowitsch PetscCheck(flg,PETSC_COMM_SELF,PETSC_ERR_SUP,"Only square matrices supported."); 885f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectQuery((PetscObject)A,"DiagonalBlock",(PetscObject*)&B)); 89616b8fbbSStefano Zampini if (!B) { /* This should use MatDenseGetSubMatrix (not create), but we would need a call like MatRestoreDiagonalBlock */ 904b6ae80fSStefano Zampini 915f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectTypeCompare((PetscObject)mdn->A,MATSEQDENSECUDA,&flg)); 92*28b400f6SJacob Faibussowitsch PetscCheck(!flg,PETSC_COMM_SELF,PETSC_ERR_SUP,"Not coded for %s. Send an email to petsc-dev@mcs.anl.gov to request this feature",MATSEQDENSECUDA); 935f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectGetComm((PetscObject)(mdn->A),&comm)); 945f80ce2aSJacob Faibussowitsch CHKERRQ(MatCreate(comm,&B)); 955f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetSizes(B,m,m,m,m)); 965f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetType(B,((PetscObject)mdn->A)->type_name)); 975f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseGetArrayRead(mdn->A,(const PetscScalar**)&array)); 985f80ce2aSJacob Faibussowitsch CHKERRQ(MatSeqDenseSetPreallocation(B,array+m*rstart)); 995f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseRestoreArrayRead(mdn->A,(const PetscScalar**)&array)); 1005f80ce2aSJacob Faibussowitsch CHKERRQ(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY)); 1015f80ce2aSJacob Faibussowitsch CHKERRQ(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY)); 1025f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectCompose((PetscObject)A,"DiagonalBlock",(PetscObject)B)); 10311bd1e4dSLisandro Dalcin *a = B; 1045f80ce2aSJacob Faibussowitsch CHKERRQ(MatDestroy(&B)); 1052205254eSKarl Rupp } else *a = B; 1060de54da6SSatish Balay PetscFunctionReturn(0); 1070de54da6SSatish Balay } 1080de54da6SSatish Balay 10913f74950SBarry Smith PetscErrorCode MatSetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],const PetscScalar v[],InsertMode addv) 1108965ea79SLois Curfman McInnes { 11139b7565bSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)mat->data; 112d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 113ace3abfcSBarry Smith PetscBool roworiented = A->roworiented; 1148965ea79SLois Curfman McInnes 1153a40ed3dSBarry Smith PetscFunctionBegin; 1168965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 1175ef9f2a5SBarry Smith if (idxm[i] < 0) continue; 1182c71b3e2SJacob Faibussowitsch PetscCheckFalse(idxm[i] >= mat->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 1198965ea79SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 1208965ea79SLois Curfman McInnes row = idxm[i] - rstart; 12139b7565bSBarry Smith if (roworiented) { 1225f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv)); 1233a40ed3dSBarry Smith } else { 1248965ea79SLois Curfman McInnes for (j=0; j<n; j++) { 1255ef9f2a5SBarry Smith if (idxn[j] < 0) continue; 1262c71b3e2SJacob Faibussowitsch PetscCheckFalse(idxn[j] >= mat->cmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 1275f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv)); 12839b7565bSBarry Smith } 1298965ea79SLois Curfman McInnes } 1302205254eSKarl Rupp } else if (!A->donotstash) { 1315080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 13239b7565bSBarry Smith if (roworiented) { 1335f80ce2aSJacob Faibussowitsch CHKERRQ(MatStashValuesRow_Private(&mat->stash,idxm[i],n,idxn,v+i*n,PETSC_FALSE)); 134d36fbae8SSatish Balay } else { 1355f80ce2aSJacob Faibussowitsch CHKERRQ(MatStashValuesCol_Private(&mat->stash,idxm[i],n,idxn,v+i,m,PETSC_FALSE)); 13639b7565bSBarry Smith } 137b49de8d1SLois Curfman McInnes } 138b49de8d1SLois Curfman McInnes } 1393a40ed3dSBarry Smith PetscFunctionReturn(0); 140b49de8d1SLois Curfman McInnes } 141b49de8d1SLois Curfman McInnes 14213f74950SBarry Smith PetscErrorCode MatGetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 143b49de8d1SLois Curfman McInnes { 144b49de8d1SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 145d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 146b49de8d1SLois Curfman McInnes 1473a40ed3dSBarry Smith PetscFunctionBegin; 148b49de8d1SLois Curfman McInnes for (i=0; i<m; i++) { 14954c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 15054c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 151b49de8d1SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 152b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 153b49de8d1SLois Curfman McInnes for (j=0; j<n; j++) { 15454c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 15554c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 1565f80ce2aSJacob Faibussowitsch CHKERRQ(MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j)); 157b49de8d1SLois Curfman McInnes } 158e7e72b3dSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 1598965ea79SLois Curfman McInnes } 1603a40ed3dSBarry Smith PetscFunctionReturn(0); 1618965ea79SLois Curfman McInnes } 1628965ea79SLois Curfman McInnes 16349a6ff4bSBarry Smith static PetscErrorCode MatDenseGetLDA_MPIDense(Mat A,PetscInt *lda) 16449a6ff4bSBarry Smith { 16549a6ff4bSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 16649a6ff4bSBarry Smith 16749a6ff4bSBarry Smith PetscFunctionBegin; 1685f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseGetLDA(a->A,lda)); 16949a6ff4bSBarry Smith PetscFunctionReturn(0); 17049a6ff4bSBarry Smith } 17149a6ff4bSBarry Smith 172ad16ce7aSStefano Zampini static PetscErrorCode MatDenseSetLDA_MPIDense(Mat A,PetscInt lda) 173ad16ce7aSStefano Zampini { 174ad16ce7aSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17517359960SJose E. Roman PetscBool iscuda; 176ad16ce7aSStefano Zampini 177ad16ce7aSStefano Zampini PetscFunctionBegin; 17817359960SJose E. Roman if (!a->A) { 179*28b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1805f80ce2aSJacob Faibussowitsch CHKERRQ(PetscLayoutSetUp(A->rmap)); 1815f80ce2aSJacob Faibussowitsch CHKERRQ(PetscLayoutSetUp(A->cmap)); 1825f80ce2aSJacob Faibussowitsch CHKERRQ(MatCreate(PETSC_COMM_SELF,&a->A)); 1835f80ce2aSJacob Faibussowitsch CHKERRQ(PetscLogObjectParent((PetscObject)A,(PetscObject)a->A)); 1845f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetSizes(a->A,A->rmap->n,A->cmap->N,A->rmap->n,A->cmap->N)); 1855f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectTypeCompare((PetscObject)A,MATMPIDENSECUDA,&iscuda)); 1865f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetType(a->A,iscuda ? MATSEQDENSECUDA : MATSEQDENSE)); 18717359960SJose E. Roman } 1885f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseSetLDA(a->A,lda)); 189ad16ce7aSStefano Zampini PetscFunctionReturn(0); 190ad16ce7aSStefano Zampini } 191ad16ce7aSStefano Zampini 192637a0070SStefano Zampini static PetscErrorCode MatDenseGetArray_MPIDense(Mat A,PetscScalar **array) 193ff14e315SSatish Balay { 194ff14e315SSatish Balay Mat_MPIDense *a = (Mat_MPIDense*)A->data; 195ff14e315SSatish Balay 1963a40ed3dSBarry Smith PetscFunctionBegin; 197*28b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1985f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseGetArray(a->A,array)); 1993a40ed3dSBarry Smith PetscFunctionReturn(0); 200ff14e315SSatish Balay } 201ff14e315SSatish Balay 202637a0070SStefano Zampini static PetscErrorCode MatDenseGetArrayRead_MPIDense(Mat A,const PetscScalar **array) 2038572280aSBarry Smith { 2048572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 2058572280aSBarry Smith 2068572280aSBarry Smith PetscFunctionBegin; 207*28b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2085f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseGetArrayRead(a->A,array)); 2098572280aSBarry Smith PetscFunctionReturn(0); 2108572280aSBarry Smith } 2118572280aSBarry Smith 2126947451fSStefano Zampini static PetscErrorCode MatDenseGetArrayWrite_MPIDense(Mat A,PetscScalar **array) 2136947451fSStefano Zampini { 2146947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 2156947451fSStefano Zampini 2166947451fSStefano Zampini PetscFunctionBegin; 217*28b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2185f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseGetArrayWrite(a->A,array)); 2196947451fSStefano Zampini PetscFunctionReturn(0); 2206947451fSStefano Zampini } 2216947451fSStefano Zampini 222637a0070SStefano Zampini static PetscErrorCode MatDensePlaceArray_MPIDense(Mat A,const PetscScalar *array) 223d3042a70SBarry Smith { 224d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 225d3042a70SBarry Smith 226d3042a70SBarry Smith PetscFunctionBegin; 227*28b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 228*28b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2295f80ce2aSJacob Faibussowitsch CHKERRQ(MatDensePlaceArray(a->A,array)); 230d3042a70SBarry Smith PetscFunctionReturn(0); 231d3042a70SBarry Smith } 232d3042a70SBarry Smith 233d3042a70SBarry Smith static PetscErrorCode MatDenseResetArray_MPIDense(Mat A) 234d3042a70SBarry Smith { 235d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 236d3042a70SBarry Smith 237d3042a70SBarry Smith PetscFunctionBegin; 238*28b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 239*28b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2405f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseResetArray(a->A)); 241d3042a70SBarry Smith PetscFunctionReturn(0); 242d3042a70SBarry Smith } 243d3042a70SBarry Smith 244d5ea218eSStefano Zampini static PetscErrorCode MatDenseReplaceArray_MPIDense(Mat A,const PetscScalar *array) 245d5ea218eSStefano Zampini { 246d5ea218eSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 247d5ea218eSStefano Zampini 248d5ea218eSStefano Zampini PetscFunctionBegin; 249*28b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 250*28b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2515f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseReplaceArray(a->A,array)); 252d5ea218eSStefano Zampini PetscFunctionReturn(0); 253d5ea218eSStefano Zampini } 254d5ea218eSStefano Zampini 2557dae84e0SHong Zhang static PetscErrorCode MatCreateSubMatrix_MPIDense(Mat A,IS isrow,IS iscol,MatReuse scall,Mat *B) 256ca3fa75bSLois Curfman McInnes { 257ca3fa75bSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data,*newmatd; 258637a0070SStefano Zampini PetscInt lda,i,j,rstart,rend,nrows,ncols,Ncols,nlrows,nlcols; 2595d0c19d7SBarry Smith const PetscInt *irow,*icol; 260637a0070SStefano Zampini const PetscScalar *v; 261637a0070SStefano Zampini PetscScalar *bv; 262ca3fa75bSLois Curfman McInnes Mat newmat; 2634aa3045dSJed Brown IS iscol_local; 26442a884f0SBarry Smith MPI_Comm comm_is,comm_mat; 265ca3fa75bSLois Curfman McInnes 266ca3fa75bSLois Curfman McInnes PetscFunctionBegin; 2675f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectGetComm((PetscObject)A,&comm_mat)); 2685f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectGetComm((PetscObject)iscol,&comm_is)); 2692c71b3e2SJacob Faibussowitsch PetscCheckFalse(comm_mat != comm_is,PETSC_COMM_SELF,PETSC_ERR_ARG_NOTSAMECOMM,"IS communicator must match matrix communicator"); 27042a884f0SBarry Smith 2715f80ce2aSJacob Faibussowitsch CHKERRQ(ISAllGather(iscol,&iscol_local)); 2725f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetIndices(isrow,&irow)); 2735f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetIndices(iscol_local,&icol)); 2745f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetLocalSize(isrow,&nrows)); 2755f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetLocalSize(iscol,&ncols)); 2765f80ce2aSJacob Faibussowitsch CHKERRQ(ISGetSize(iscol,&Ncols)); /* global number of columns, size of iscol_local */ 277ca3fa75bSLois Curfman McInnes 278ca3fa75bSLois Curfman McInnes /* No parallel redistribution currently supported! Should really check each index set 2797eba5e9cSLois Curfman McInnes to comfirm that it is OK. ... Currently supports only submatrix same partitioning as 2807eba5e9cSLois Curfman McInnes original matrix! */ 281ca3fa75bSLois Curfman McInnes 2825f80ce2aSJacob Faibussowitsch CHKERRQ(MatGetLocalSize(A,&nlrows,&nlcols)); 2835f80ce2aSJacob Faibussowitsch CHKERRQ(MatGetOwnershipRange(A,&rstart,&rend)); 284ca3fa75bSLois Curfman McInnes 285ca3fa75bSLois Curfman McInnes /* Check submatrix call */ 286ca3fa75bSLois Curfman McInnes if (scall == MAT_REUSE_MATRIX) { 287e32f2f54SBarry Smith /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */ 2887eba5e9cSLois Curfman McInnes /* Really need to test rows and column sizes! */ 289ca3fa75bSLois Curfman McInnes newmat = *B; 290ca3fa75bSLois Curfman McInnes } else { 291ca3fa75bSLois Curfman McInnes /* Create and fill new matrix */ 2925f80ce2aSJacob Faibussowitsch CHKERRQ(MatCreate(PetscObjectComm((PetscObject)A),&newmat)); 2935f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetSizes(newmat,nrows,ncols,PETSC_DECIDE,Ncols)); 2945f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetType(newmat,((PetscObject)A)->type_name)); 2955f80ce2aSJacob Faibussowitsch CHKERRQ(MatMPIDenseSetPreallocation(newmat,NULL)); 296ca3fa75bSLois Curfman McInnes } 297ca3fa75bSLois Curfman McInnes 298ca3fa75bSLois Curfman McInnes /* Now extract the data pointers and do the copy, column at a time */ 299ca3fa75bSLois Curfman McInnes newmatd = (Mat_MPIDense*)newmat->data; 3005f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseGetArray(newmatd->A,&bv)); 3015f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseGetArrayRead(mat->A,&v)); 3025f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseGetLDA(mat->A,&lda)); 3034aa3045dSJed Brown for (i=0; i<Ncols; i++) { 304637a0070SStefano Zampini const PetscScalar *av = v + lda*icol[i]; 305ca3fa75bSLois Curfman McInnes for (j=0; j<nrows; j++) { 3067eba5e9cSLois Curfman McInnes *bv++ = av[irow[j] - rstart]; 307ca3fa75bSLois Curfman McInnes } 308ca3fa75bSLois Curfman McInnes } 3095f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseRestoreArrayRead(mat->A,&v)); 3105f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseRestoreArray(newmatd->A,&bv)); 311ca3fa75bSLois Curfman McInnes 312ca3fa75bSLois Curfman McInnes /* Assemble the matrices so that the correct flags are set */ 3135f80ce2aSJacob Faibussowitsch CHKERRQ(MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY)); 3145f80ce2aSJacob Faibussowitsch CHKERRQ(MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY)); 315ca3fa75bSLois Curfman McInnes 316ca3fa75bSLois Curfman McInnes /* Free work space */ 3175f80ce2aSJacob Faibussowitsch CHKERRQ(ISRestoreIndices(isrow,&irow)); 3185f80ce2aSJacob Faibussowitsch CHKERRQ(ISRestoreIndices(iscol_local,&icol)); 3195f80ce2aSJacob Faibussowitsch CHKERRQ(ISDestroy(&iscol_local)); 320ca3fa75bSLois Curfman McInnes *B = newmat; 321ca3fa75bSLois Curfman McInnes PetscFunctionReturn(0); 322ca3fa75bSLois Curfman McInnes } 323ca3fa75bSLois Curfman McInnes 324637a0070SStefano Zampini PetscErrorCode MatDenseRestoreArray_MPIDense(Mat A,PetscScalar **array) 325ff14e315SSatish Balay { 32673a71a0fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 32773a71a0fSBarry Smith 3283a40ed3dSBarry Smith PetscFunctionBegin; 3295f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseRestoreArray(a->A,array)); 3303a40ed3dSBarry Smith PetscFunctionReturn(0); 331ff14e315SSatish Balay } 332ff14e315SSatish Balay 333637a0070SStefano Zampini PetscErrorCode MatDenseRestoreArrayRead_MPIDense(Mat A,const PetscScalar **array) 3348572280aSBarry Smith { 3358572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 3368572280aSBarry Smith 3378572280aSBarry Smith PetscFunctionBegin; 3385f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseRestoreArrayRead(a->A,array)); 3398572280aSBarry Smith PetscFunctionReturn(0); 3408572280aSBarry Smith } 3418572280aSBarry Smith 3426947451fSStefano Zampini PetscErrorCode MatDenseRestoreArrayWrite_MPIDense(Mat A,PetscScalar **array) 3436947451fSStefano Zampini { 3446947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 3456947451fSStefano Zampini 3466947451fSStefano Zampini PetscFunctionBegin; 3475f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseRestoreArrayWrite(a->A,array)); 3486947451fSStefano Zampini PetscFunctionReturn(0); 3496947451fSStefano Zampini } 3506947451fSStefano Zampini 351dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode) 3528965ea79SLois Curfman McInnes { 35339ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 35413f74950SBarry Smith PetscInt nstash,reallocs; 3558965ea79SLois Curfman McInnes 3563a40ed3dSBarry Smith PetscFunctionBegin; 3574067683fSStefano Zampini if (mdn->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 3588965ea79SLois Curfman McInnes 3595f80ce2aSJacob Faibussowitsch CHKERRQ(MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range)); 3605f80ce2aSJacob Faibussowitsch CHKERRQ(MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs)); 3615f80ce2aSJacob Faibussowitsch CHKERRQ(PetscInfo(mdn->A,"Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n",nstash,reallocs)); 3623a40ed3dSBarry Smith PetscFunctionReturn(0); 3638965ea79SLois Curfman McInnes } 3648965ea79SLois Curfman McInnes 365dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode) 3668965ea79SLois Curfman McInnes { 36739ddd567SLois Curfman McInnes Mat_MPIDense *mdn=(Mat_MPIDense*)mat->data; 36813f74950SBarry Smith PetscInt i,*row,*col,flg,j,rstart,ncols; 36913f74950SBarry Smith PetscMPIInt n; 37087828ca2SBarry Smith PetscScalar *val; 3718965ea79SLois Curfman McInnes 3723a40ed3dSBarry Smith PetscFunctionBegin; 373910cf402Sprj- if (!mdn->donotstash && !mat->nooffprocentries) { 3748965ea79SLois Curfman McInnes /* wait on receives */ 3757ef1d9bdSSatish Balay while (1) { 3765f80ce2aSJacob Faibussowitsch CHKERRQ(MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg)); 3777ef1d9bdSSatish Balay if (!flg) break; 3788965ea79SLois Curfman McInnes 3797ef1d9bdSSatish Balay for (i=0; i<n;) { 3807ef1d9bdSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 3812205254eSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 3822205254eSKarl Rupp if (row[j] != rstart) break; 3832205254eSKarl Rupp } 3847ef1d9bdSSatish Balay if (j < n) ncols = j-i; 3857ef1d9bdSSatish Balay else ncols = n-i; 3867ef1d9bdSSatish Balay /* Now assemble all these values with a single function call */ 3875f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,mat->insertmode)); 3887ef1d9bdSSatish Balay i = j; 3898965ea79SLois Curfman McInnes } 3907ef1d9bdSSatish Balay } 3915f80ce2aSJacob Faibussowitsch CHKERRQ(MatStashScatterEnd_Private(&mat->stash)); 392910cf402Sprj- } 3938965ea79SLois Curfman McInnes 3945f80ce2aSJacob Faibussowitsch CHKERRQ(MatAssemblyBegin(mdn->A,mode)); 3955f80ce2aSJacob Faibussowitsch CHKERRQ(MatAssemblyEnd(mdn->A,mode)); 3968965ea79SLois Curfman McInnes 3976d4a8577SBarry Smith if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 3985f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetUpMultiply_MPIDense(mat)); 3998965ea79SLois Curfman McInnes } 4003a40ed3dSBarry Smith PetscFunctionReturn(0); 4018965ea79SLois Curfman McInnes } 4028965ea79SLois Curfman McInnes 403dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIDense(Mat A) 4048965ea79SLois Curfman McInnes { 40539ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 4063a40ed3dSBarry Smith 4073a40ed3dSBarry Smith PetscFunctionBegin; 4085f80ce2aSJacob Faibussowitsch CHKERRQ(MatZeroEntries(l->A)); 4093a40ed3dSBarry Smith PetscFunctionReturn(0); 4108965ea79SLois Curfman McInnes } 4118965ea79SLois Curfman McInnes 412637a0070SStefano Zampini PetscErrorCode MatZeroRows_MPIDense(Mat A,PetscInt n,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 4138965ea79SLois Curfman McInnes { 41439ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 415637a0070SStefano Zampini PetscInt i,len,*lrows; 416637a0070SStefano Zampini 417637a0070SStefano Zampini PetscFunctionBegin; 418637a0070SStefano Zampini /* get locally owned rows */ 4195f80ce2aSJacob Faibussowitsch CHKERRQ(PetscLayoutMapLocal(A->rmap,n,rows,&len,&lrows,NULL)); 420637a0070SStefano Zampini /* fix right hand side if needed */ 421637a0070SStefano Zampini if (x && b) { 42297b48c8fSBarry Smith const PetscScalar *xx; 42397b48c8fSBarry Smith PetscScalar *bb; 4248965ea79SLois Curfman McInnes 4255f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArrayRead(x, &xx)); 4265f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArrayWrite(b, &bb)); 427637a0070SStefano Zampini for (i=0;i<len;++i) bb[lrows[i]] = diag*xx[lrows[i]]; 4285f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArrayRead(x, &xx)); 4295f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArrayWrite(b, &bb)); 43097b48c8fSBarry Smith } 4315f80ce2aSJacob Faibussowitsch CHKERRQ(MatZeroRows(l->A,len,lrows,0.0,NULL,NULL)); 432e2eb51b1SBarry Smith if (diag != 0.0) { 433637a0070SStefano Zampini Vec d; 434b9679d65SBarry Smith 4355f80ce2aSJacob Faibussowitsch CHKERRQ(MatCreateVecs(A,NULL,&d)); 4365f80ce2aSJacob Faibussowitsch CHKERRQ(VecSet(d,diag)); 4375f80ce2aSJacob Faibussowitsch CHKERRQ(MatDiagonalSet(A,d,INSERT_VALUES)); 4385f80ce2aSJacob Faibussowitsch CHKERRQ(VecDestroy(&d)); 439b9679d65SBarry Smith } 4405f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFree(lrows)); 4413a40ed3dSBarry Smith PetscFunctionReturn(0); 4428965ea79SLois Curfman McInnes } 4438965ea79SLois Curfman McInnes 444cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMult_SeqDense(Mat,Vec,Vec); 445cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultAdd_SeqDense(Mat,Vec,Vec,Vec); 446cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTranspose_SeqDense(Mat,Vec,Vec); 447cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTransposeAdd_SeqDense(Mat,Vec,Vec,Vec); 448cc2e6a90SBarry Smith 449dfbe8321SBarry Smith PetscErrorCode MatMult_MPIDense(Mat mat,Vec xx,Vec yy) 4508965ea79SLois Curfman McInnes { 45139ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 452637a0070SStefano Zampini const PetscScalar *ax; 453637a0070SStefano Zampini PetscScalar *ay; 454d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 455c456f294SBarry Smith 4563a40ed3dSBarry Smith PetscFunctionBegin; 4575f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArrayReadAndMemType(xx,&ax,&axmtype)); 4585f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArrayAndMemType(mdn->lvec,&ay,&aymtype)); 4595f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSFBcastWithMemTypeBegin(mdn->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPI_REPLACE)); 4605f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ax,ay,MPI_REPLACE)); 4615f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArrayAndMemType(mdn->lvec,&ay)); 4625f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArrayReadAndMemType(xx,&ax)); 4635f80ce2aSJacob Faibussowitsch CHKERRQ((*mdn->A->ops->mult)(mdn->A,mdn->lvec,yy)); 4643a40ed3dSBarry Smith PetscFunctionReturn(0); 4658965ea79SLois Curfman McInnes } 4668965ea79SLois Curfman McInnes 467dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz) 4688965ea79SLois Curfman McInnes { 46939ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 470637a0070SStefano Zampini const PetscScalar *ax; 471637a0070SStefano Zampini PetscScalar *ay; 472d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 473c456f294SBarry Smith 4743a40ed3dSBarry Smith PetscFunctionBegin; 4755f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArrayReadAndMemType(xx,&ax,&axmtype)); 4765f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArrayAndMemType(mdn->lvec,&ay,&aymtype)); 4775f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSFBcastWithMemTypeBegin(mdn->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPI_REPLACE)); 4785f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ax,ay,MPI_REPLACE)); 4795f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArrayAndMemType(mdn->lvec,&ay)); 4805f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArrayReadAndMemType(xx,&ax)); 4815f80ce2aSJacob Faibussowitsch CHKERRQ((*mdn->A->ops->multadd)(mdn->A,mdn->lvec,yy,zz)); 4823a40ed3dSBarry Smith PetscFunctionReturn(0); 4838965ea79SLois Curfman McInnes } 4848965ea79SLois Curfman McInnes 485dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIDense(Mat A,Vec xx,Vec yy) 486096963f5SLois Curfman McInnes { 487096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 488637a0070SStefano Zampini const PetscScalar *ax; 489637a0070SStefano Zampini PetscScalar *ay; 490d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 491096963f5SLois Curfman McInnes 4923a40ed3dSBarry Smith PetscFunctionBegin; 4935f80ce2aSJacob Faibussowitsch CHKERRQ(VecSet(yy,0.0)); 4945f80ce2aSJacob Faibussowitsch CHKERRQ((*a->A->ops->multtranspose)(a->A,xx,a->lvec)); 4955f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArrayReadAndMemType(a->lvec,&ax,&axmtype)); 4965f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArrayAndMemType(yy,&ay,&aymtype)); 4975f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSFReduceWithMemTypeBegin(a->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPIU_SUM)); 4985f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSFReduceEnd(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM)); 4995f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArrayReadAndMemType(a->lvec,&ax)); 5005f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArrayAndMemType(yy,&ay)); 5013a40ed3dSBarry Smith PetscFunctionReturn(0); 502096963f5SLois Curfman McInnes } 503096963f5SLois Curfman McInnes 504dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz) 505096963f5SLois Curfman McInnes { 506096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 507637a0070SStefano Zampini const PetscScalar *ax; 508637a0070SStefano Zampini PetscScalar *ay; 509d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 510096963f5SLois Curfman McInnes 5113a40ed3dSBarry Smith PetscFunctionBegin; 5125f80ce2aSJacob Faibussowitsch CHKERRQ(VecCopy(yy,zz)); 5135f80ce2aSJacob Faibussowitsch CHKERRQ((*a->A->ops->multtranspose)(a->A,xx,a->lvec)); 5145f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArrayReadAndMemType(a->lvec,&ax,&axmtype)); 5155f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArrayAndMemType(zz,&ay,&aymtype)); 5165f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSFReduceWithMemTypeBegin(a->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPIU_SUM)); 5175f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSFReduceEnd(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM)); 5185f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArrayReadAndMemType(a->lvec,&ax)); 5195f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArrayAndMemType(zz,&ay)); 5203a40ed3dSBarry Smith PetscFunctionReturn(0); 521096963f5SLois Curfman McInnes } 522096963f5SLois Curfman McInnes 523dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIDense(Mat A,Vec v) 5248965ea79SLois Curfman McInnes { 52539ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 526637a0070SStefano Zampini PetscInt lda,len,i,n,m = A->rmap->n,radd; 52787828ca2SBarry Smith PetscScalar *x,zero = 0.0; 528637a0070SStefano Zampini const PetscScalar *av; 529ed3cc1f0SBarry Smith 5303a40ed3dSBarry Smith PetscFunctionBegin; 5315f80ce2aSJacob Faibussowitsch CHKERRQ(VecSet(v,zero)); 5325f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArray(v,&x)); 5335f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetSize(v,&n)); 5342c71b3e2SJacob Faibussowitsch PetscCheckFalse(n != A->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec"); 535d0f46423SBarry Smith len = PetscMin(a->A->rmap->n,a->A->cmap->n); 536d0f46423SBarry Smith radd = A->rmap->rstart*m; 5375f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseGetArrayRead(a->A,&av)); 5385f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseGetLDA(a->A,&lda)); 53944cd7ae7SLois Curfman McInnes for (i=0; i<len; i++) { 540637a0070SStefano Zampini x[i] = av[radd + i*lda + i]; 541096963f5SLois Curfman McInnes } 5425f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseRestoreArrayRead(a->A,&av)); 5435f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArray(v,&x)); 5443a40ed3dSBarry Smith PetscFunctionReturn(0); 5458965ea79SLois Curfman McInnes } 5468965ea79SLois Curfman McInnes 547dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIDense(Mat mat) 5488965ea79SLois Curfman McInnes { 5493501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 550ed3cc1f0SBarry Smith 5513a40ed3dSBarry Smith PetscFunctionBegin; 552aa482453SBarry Smith #if defined(PETSC_USE_LOG) 553c0aa6a63SJacob Faibussowitsch PetscLogObjectState((PetscObject)mat,"Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT,mat->rmap->N,mat->cmap->N); 5548965ea79SLois Curfman McInnes #endif 5555f80ce2aSJacob Faibussowitsch CHKERRQ(MatStashDestroy_Private(&mat->stash)); 556*28b400f6SJacob Faibussowitsch PetscCheck(!mdn->vecinuse,PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 557*28b400f6SJacob Faibussowitsch PetscCheck(!mdn->matinuse,PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 5585f80ce2aSJacob Faibussowitsch CHKERRQ(MatDestroy(&mdn->A)); 5595f80ce2aSJacob Faibussowitsch CHKERRQ(VecDestroy(&mdn->lvec)); 5605f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSFDestroy(&mdn->Mvctx)); 5615f80ce2aSJacob Faibussowitsch CHKERRQ(VecDestroy(&mdn->cvec)); 5625f80ce2aSJacob Faibussowitsch CHKERRQ(MatDestroy(&mdn->cmat)); 56301b82886SBarry Smith 5645f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFree(mat->data)); 5655f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectChangeTypeName((PetscObject)mat,NULL)); 5668baccfbdSHong Zhang 5675f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",NULL)); 5685f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatDenseSetLDA_C",NULL)); 5695f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",NULL)); 5705f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",NULL)); 5715f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",NULL)); 5725f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",NULL)); 5735f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayWrite_C",NULL)); 5745f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayWrite_C",NULL)); 5755f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",NULL)); 5765f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",NULL)); 5775f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatDenseReplaceArray_C",NULL)); 5785f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpiaij_mpidense_C",NULL)); 5795f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_mpiaij_C",NULL)); 5808baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 5815f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",NULL)); 5828baccfbdSHong Zhang #endif 583d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 5845f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_scalapack_C",NULL)); 585d24d4204SJose E. Roman #endif 5865f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",NULL)); 5875f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaij_mpidense_C",NULL)); 5885f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaij_C",NULL)); 5896718818eSStefano Zampini #if defined (PETSC_HAVE_CUDA) 5905f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaijcusparse_mpidense_C",NULL)); 5915f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaijcusparse_C",NULL)); 5926718818eSStefano Zampini #endif 5935f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",NULL)); 5945f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",NULL)); 5955f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",NULL)); 5965f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",NULL)); 5975f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",NULL)); 5985f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",NULL)); 5995f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",NULL)); 6005f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",NULL)); 6015f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetSubMatrix_C",NULL)); 6025f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreSubMatrix_C",NULL)); 6033a40ed3dSBarry Smith PetscFunctionReturn(0); 6048965ea79SLois Curfman McInnes } 60539ddd567SLois Curfman McInnes 60652c5f739Sprj- PETSC_INTERN PetscErrorCode MatView_SeqDense(Mat,PetscViewer); 60752c5f739Sprj- 6089804daf3SBarry Smith #include <petscdraw.h> 6096849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 6108965ea79SLois Curfman McInnes { 61139ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 612616b8fbbSStefano Zampini PetscMPIInt rank; 61319fd82e9SBarry Smith PetscViewerType vtype; 614ace3abfcSBarry Smith PetscBool iascii,isdraw; 615b0a32e0cSBarry Smith PetscViewer sviewer; 616f3ef73ceSBarry Smith PetscViewerFormat format; 6178965ea79SLois Curfman McInnes 6183a40ed3dSBarry Smith PetscFunctionBegin; 6195f80ce2aSJacob Faibussowitsch CHKERRMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank)); 6205f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii)); 6215f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw)); 62232077d6dSBarry Smith if (iascii) { 6235f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerGetType(viewer,&vtype)); 6245f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerGetFormat(viewer,&format)); 625456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 6264e220ebcSLois Curfman McInnes MatInfo info; 6275f80ce2aSJacob Faibussowitsch CHKERRQ(MatGetInfo(mat,MAT_LOCAL,&info)); 6285f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPushSynchronized(viewer)); 6295f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIISynchronizedPrintf(viewer," [%d] local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %" PetscInt_FMT " \n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory)); 6305f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerFlush(viewer)); 6315f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerASCIIPopSynchronized(viewer)); 6325f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSFView(mdn->Mvctx,viewer)); 6333a40ed3dSBarry Smith PetscFunctionReturn(0); 634fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 6353a40ed3dSBarry Smith PetscFunctionReturn(0); 6368965ea79SLois Curfman McInnes } 637f1af5d2fSBarry Smith } else if (isdraw) { 638b0a32e0cSBarry Smith PetscDraw draw; 639ace3abfcSBarry Smith PetscBool isnull; 640f1af5d2fSBarry Smith 6415f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerDrawGetDraw(viewer,0,&draw)); 6425f80ce2aSJacob Faibussowitsch CHKERRQ(PetscDrawIsNull(draw,&isnull)); 643f1af5d2fSBarry Smith if (isnull) PetscFunctionReturn(0); 644f1af5d2fSBarry Smith } 64577ed5343SBarry Smith 6467da1fb6eSBarry Smith { 6478965ea79SLois Curfman McInnes /* assemble the entire matrix onto first processor. */ 6488965ea79SLois Curfman McInnes Mat A; 649d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,m,row,i,nz; 650ba8c8a56SBarry Smith PetscInt *cols; 651ba8c8a56SBarry Smith PetscScalar *vals; 6528965ea79SLois Curfman McInnes 6535f80ce2aSJacob Faibussowitsch CHKERRQ(MatCreate(PetscObjectComm((PetscObject)mat),&A)); 654dd400576SPatrick Sanan if (rank == 0) { 6555f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetSizes(A,M,N,M,N)); 6563a40ed3dSBarry Smith } else { 6575f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetSizes(A,0,0,M,N)); 6588965ea79SLois Curfman McInnes } 6597adad957SLisandro Dalcin /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */ 6605f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetType(A,MATMPIDENSE)); 6615f80ce2aSJacob Faibussowitsch CHKERRQ(MatMPIDenseSetPreallocation(A,NULL)); 6625f80ce2aSJacob Faibussowitsch CHKERRQ(PetscLogObjectParent((PetscObject)mat,(PetscObject)A)); 6638965ea79SLois Curfman McInnes 66439ddd567SLois Curfman McInnes /* Copy the matrix ... This isn't the most efficient means, 66539ddd567SLois Curfman McInnes but it's quick for now */ 66651022da4SBarry Smith A->insertmode = INSERT_VALUES; 6672205254eSKarl Rupp 6682205254eSKarl Rupp row = mat->rmap->rstart; 6692205254eSKarl Rupp m = mdn->A->rmap->n; 6708965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 6715f80ce2aSJacob Faibussowitsch CHKERRQ(MatGetRow_MPIDense(mat,row,&nz,&cols,&vals)); 6725f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetValues_MPIDense(A,1,&row,nz,cols,vals,INSERT_VALUES)); 6735f80ce2aSJacob Faibussowitsch CHKERRQ(MatRestoreRow_MPIDense(mat,row,&nz,&cols,&vals)); 67439ddd567SLois Curfman McInnes row++; 6758965ea79SLois Curfman McInnes } 6768965ea79SLois Curfman McInnes 6775f80ce2aSJacob Faibussowitsch CHKERRQ(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY)); 6785f80ce2aSJacob Faibussowitsch CHKERRQ(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY)); 6795f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer)); 680dd400576SPatrick Sanan if (rank == 0) { 6815f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectSetName((PetscObject)((Mat_MPIDense*)(A->data))->A,((PetscObject)mat)->name)); 6825f80ce2aSJacob Faibussowitsch CHKERRQ(MatView_SeqDense(((Mat_MPIDense*)(A->data))->A,sviewer)); 6838965ea79SLois Curfman McInnes } 6845f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer)); 6855f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerFlush(viewer)); 6865f80ce2aSJacob Faibussowitsch CHKERRQ(MatDestroy(&A)); 6878965ea79SLois Curfman McInnes } 6883a40ed3dSBarry Smith PetscFunctionReturn(0); 6898965ea79SLois Curfman McInnes } 6908965ea79SLois Curfman McInnes 691dfbe8321SBarry Smith PetscErrorCode MatView_MPIDense(Mat mat,PetscViewer viewer) 6928965ea79SLois Curfman McInnes { 693ace3abfcSBarry Smith PetscBool iascii,isbinary,isdraw,issocket; 6948965ea79SLois Curfman McInnes 695433994e6SBarry Smith PetscFunctionBegin; 6965f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii)); 6975f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary)); 6985f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket)); 6995f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw)); 7000f5bd95cSBarry Smith 70132077d6dSBarry Smith if (iascii || issocket || isdraw) { 7025f80ce2aSJacob Faibussowitsch CHKERRQ(MatView_MPIDense_ASCIIorDraworSocket(mat,viewer)); 7030f5bd95cSBarry Smith } else if (isbinary) { 7045f80ce2aSJacob Faibussowitsch CHKERRQ(MatView_Dense_Binary(mat,viewer)); 70511aeaf0aSBarry Smith } 7063a40ed3dSBarry Smith PetscFunctionReturn(0); 7078965ea79SLois Curfman McInnes } 7088965ea79SLois Curfman McInnes 709dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info) 7108965ea79SLois Curfman McInnes { 7113501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 7123501a2bdSLois Curfman McInnes Mat mdn = mat->A; 7133966268fSBarry Smith PetscLogDouble isend[5],irecv[5]; 7148965ea79SLois Curfman McInnes 7153a40ed3dSBarry Smith PetscFunctionBegin; 7164e220ebcSLois Curfman McInnes info->block_size = 1.0; 7172205254eSKarl Rupp 7185f80ce2aSJacob Faibussowitsch CHKERRQ(MatGetInfo(mdn,MAT_LOCAL,info)); 7192205254eSKarl Rupp 7204e220ebcSLois Curfman McInnes isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 7214e220ebcSLois Curfman McInnes isend[3] = info->memory; isend[4] = info->mallocs; 7228965ea79SLois Curfman McInnes if (flag == MAT_LOCAL) { 7234e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 7244e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 7254e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 7264e220ebcSLois Curfman McInnes info->memory = isend[3]; 7274e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 7288965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 7295f80ce2aSJacob Faibussowitsch CHKERRMPI(MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_MAX,PetscObjectComm((PetscObject)A))); 7302205254eSKarl Rupp 7314e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7324e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7334e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7344e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7354e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7368965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 7375f80ce2aSJacob Faibussowitsch CHKERRMPI(MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_SUM,PetscObjectComm((PetscObject)A))); 7382205254eSKarl Rupp 7394e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7404e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7414e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7424e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7434e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7448965ea79SLois Curfman McInnes } 7454e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 7464e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 7474e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 7483a40ed3dSBarry Smith PetscFunctionReturn(0); 7498965ea79SLois Curfman McInnes } 7508965ea79SLois Curfman McInnes 751ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIDense(Mat A,MatOption op,PetscBool flg) 7528965ea79SLois Curfman McInnes { 75339ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 7548965ea79SLois Curfman McInnes 7553a40ed3dSBarry Smith PetscFunctionBegin; 75612c028f9SKris Buschelman switch (op) { 757512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 75812c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 75912c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 76043674050SBarry Smith MatCheckPreallocated(A,1); 7615f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetOption(a->A,op,flg)); 76212c028f9SKris Buschelman break; 76312c028f9SKris Buschelman case MAT_ROW_ORIENTED: 76443674050SBarry Smith MatCheckPreallocated(A,1); 7654e0d8c25SBarry Smith a->roworiented = flg; 7665f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetOption(a->A,op,flg)); 76712c028f9SKris Buschelman break; 7688c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 76913fa8e87SLisandro Dalcin case MAT_KEEP_NONZERO_PATTERN: 77012c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 771071fcb05SBarry Smith case MAT_SORTED_FULL: 7725f80ce2aSJacob Faibussowitsch CHKERRQ(PetscInfo(A,"Option %s ignored\n",MatOptions[op])); 77312c028f9SKris Buschelman break; 77412c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 7754e0d8c25SBarry Smith a->donotstash = flg; 77612c028f9SKris Buschelman break; 77777e54ba9SKris Buschelman case MAT_SYMMETRIC: 77877e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 7799a4540c5SBarry Smith case MAT_HERMITIAN: 7809a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 781600fe468SBarry Smith case MAT_IGNORE_LOWER_TRIANGULAR: 7825d7aebe8SStefano Zampini case MAT_IGNORE_ZERO_ENTRIES: 7835f80ce2aSJacob Faibussowitsch CHKERRQ(PetscInfo(A,"Option %s ignored\n",MatOptions[op])); 78477e54ba9SKris Buschelman break; 78512c028f9SKris Buschelman default: 78698921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %s",MatOptions[op]); 7873a40ed3dSBarry Smith } 7883a40ed3dSBarry Smith PetscFunctionReturn(0); 7898965ea79SLois Curfman McInnes } 7908965ea79SLois Curfman McInnes 791dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIDense(Mat A,Vec ll,Vec rr) 7925b2fa520SLois Curfman McInnes { 7935b2fa520SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 794637a0070SStefano Zampini const PetscScalar *l; 795637a0070SStefano Zampini PetscScalar x,*v,*vv,*r; 796637a0070SStefano Zampini PetscInt i,j,s2a,s3a,s2,s3,m=mdn->A->rmap->n,n=mdn->A->cmap->n,lda; 7975b2fa520SLois Curfman McInnes 7985b2fa520SLois Curfman McInnes PetscFunctionBegin; 7995f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseGetArray(mdn->A,&vv)); 8005f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseGetLDA(mdn->A,&lda)); 8015f80ce2aSJacob Faibussowitsch CHKERRQ(MatGetLocalSize(A,&s2,&s3)); 8025b2fa520SLois Curfman McInnes if (ll) { 8035f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetLocalSize(ll,&s2a)); 8042c71b3e2SJacob Faibussowitsch PetscCheckFalse(s2a != s2,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vector non-conforming local size, %" PetscInt_FMT " != %" PetscInt_FMT, s2a, s2); 8055f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArrayRead(ll,&l)); 8065b2fa520SLois Curfman McInnes for (i=0; i<m; i++) { 8075b2fa520SLois Curfman McInnes x = l[i]; 808637a0070SStefano Zampini v = vv + i; 809637a0070SStefano Zampini for (j=0; j<n; j++) { (*v) *= x; v+= lda;} 8105b2fa520SLois Curfman McInnes } 8115f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArrayRead(ll,&l)); 8125f80ce2aSJacob Faibussowitsch CHKERRQ(PetscLogFlops(1.0*n*m)); 8135b2fa520SLois Curfman McInnes } 8145b2fa520SLois Curfman McInnes if (rr) { 815637a0070SStefano Zampini const PetscScalar *ar; 816637a0070SStefano Zampini 8175f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetLocalSize(rr,&s3a)); 8182c71b3e2SJacob Faibussowitsch PetscCheckFalse(s3a != s3,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vec non-conforming local size, %" PetscInt_FMT " != %" PetscInt_FMT ".", s3a, s3); 8195f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArrayRead(rr,&ar)); 8205f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArray(mdn->lvec,&r)); 8215f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSFBcastBegin(mdn->Mvctx,MPIU_SCALAR,ar,r,MPI_REPLACE)); 8225f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ar,r,MPI_REPLACE)); 8235f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArrayRead(rr,&ar)); 8245b2fa520SLois Curfman McInnes for (i=0; i<n; i++) { 8255b2fa520SLois Curfman McInnes x = r[i]; 826637a0070SStefano Zampini v = vv + i*lda; 8272205254eSKarl Rupp for (j=0; j<m; j++) (*v++) *= x; 8285b2fa520SLois Curfman McInnes } 8295f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArray(mdn->lvec,&r)); 8305f80ce2aSJacob Faibussowitsch CHKERRQ(PetscLogFlops(1.0*n*m)); 8315b2fa520SLois Curfman McInnes } 8325f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseRestoreArray(mdn->A,&vv)); 8335b2fa520SLois Curfman McInnes PetscFunctionReturn(0); 8345b2fa520SLois Curfman McInnes } 8355b2fa520SLois Curfman McInnes 836dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIDense(Mat A,NormType type,PetscReal *nrm) 837096963f5SLois Curfman McInnes { 8383501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 83913f74950SBarry Smith PetscInt i,j; 840616b8fbbSStefano Zampini PetscMPIInt size; 841329f5518SBarry Smith PetscReal sum = 0.0; 842637a0070SStefano Zampini const PetscScalar *av,*v; 8433501a2bdSLois Curfman McInnes 8443a40ed3dSBarry Smith PetscFunctionBegin; 8455f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseGetArrayRead(mdn->A,&av)); 846637a0070SStefano Zampini v = av; 8475f80ce2aSJacob Faibussowitsch CHKERRMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A),&size)); 848616b8fbbSStefano Zampini if (size == 1) { 8495f80ce2aSJacob Faibussowitsch CHKERRQ(MatNorm(mdn->A,type,nrm)); 8503501a2bdSLois Curfman McInnes } else { 8513501a2bdSLois Curfman McInnes if (type == NORM_FROBENIUS) { 852d0f46423SBarry Smith for (i=0; i<mdn->A->cmap->n*mdn->A->rmap->n; i++) { 853329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 8543501a2bdSLois Curfman McInnes } 8555f80ce2aSJacob Faibussowitsch CHKERRMPI(MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A))); 8568f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 8575f80ce2aSJacob Faibussowitsch CHKERRQ(PetscLogFlops(2.0*mdn->A->cmap->n*mdn->A->rmap->n)); 8583a40ed3dSBarry Smith } else if (type == NORM_1) { 859329f5518SBarry Smith PetscReal *tmp,*tmp2; 8605f80ce2aSJacob Faibussowitsch CHKERRQ(PetscCalloc2(A->cmap->N,&tmp,A->cmap->N,&tmp2)); 861064f8208SBarry Smith *nrm = 0.0; 862637a0070SStefano Zampini v = av; 863d0f46423SBarry Smith for (j=0; j<mdn->A->cmap->n; j++) { 864d0f46423SBarry Smith for (i=0; i<mdn->A->rmap->n; i++) { 86567e560aaSBarry Smith tmp[j] += PetscAbsScalar(*v); v++; 8663501a2bdSLois Curfman McInnes } 8673501a2bdSLois Curfman McInnes } 8685f80ce2aSJacob Faibussowitsch CHKERRMPI(MPIU_Allreduce(tmp,tmp2,A->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A))); 869d0f46423SBarry Smith for (j=0; j<A->cmap->N; j++) { 870064f8208SBarry Smith if (tmp2[j] > *nrm) *nrm = tmp2[j]; 8713501a2bdSLois Curfman McInnes } 8725f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFree2(tmp,tmp2)); 8735f80ce2aSJacob Faibussowitsch CHKERRQ(PetscLogFlops(A->cmap->n*A->rmap->n)); 8743a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 875329f5518SBarry Smith PetscReal ntemp; 8765f80ce2aSJacob Faibussowitsch CHKERRQ(MatNorm(mdn->A,type,&ntemp)); 8775f80ce2aSJacob Faibussowitsch CHKERRMPI(MPIU_Allreduce(&ntemp,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A))); 878ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"No support for two norm"); 8793501a2bdSLois Curfman McInnes } 8805f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseRestoreArrayRead(mdn->A,&av)); 8813a40ed3dSBarry Smith PetscFunctionReturn(0); 8823501a2bdSLois Curfman McInnes } 8833501a2bdSLois Curfman McInnes 884fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIDense(Mat A,MatReuse reuse,Mat *matout) 8853501a2bdSLois Curfman McInnes { 8863501a2bdSLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 8873501a2bdSLois Curfman McInnes Mat B; 888d0f46423SBarry Smith PetscInt M = A->rmap->N,N = A->cmap->N,m,n,*rwork,rstart = A->rmap->rstart; 889637a0070SStefano Zampini PetscInt j,i,lda; 89087828ca2SBarry Smith PetscScalar *v; 8913501a2bdSLois Curfman McInnes 8923a40ed3dSBarry Smith PetscFunctionBegin; 893cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 8945f80ce2aSJacob Faibussowitsch CHKERRQ(MatCreate(PetscObjectComm((PetscObject)A),&B)); 8955f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetSizes(B,A->cmap->n,A->rmap->n,N,M)); 8965f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetType(B,((PetscObject)A)->type_name)); 8975f80ce2aSJacob Faibussowitsch CHKERRQ(MatMPIDenseSetPreallocation(B,NULL)); 898637a0070SStefano Zampini } else B = *matout; 8993501a2bdSLois Curfman McInnes 900637a0070SStefano Zampini m = a->A->rmap->n; n = a->A->cmap->n; 9015f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseGetArrayRead(a->A,(const PetscScalar**)&v)); 9025f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseGetLDA(a->A,&lda)); 9035f80ce2aSJacob Faibussowitsch CHKERRQ(PetscMalloc1(m,&rwork)); 9043501a2bdSLois Curfman McInnes for (i=0; i<m; i++) rwork[i] = rstart + i; 9051acff37aSSatish Balay for (j=0; j<n; j++) { 9065f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES)); 907637a0070SStefano Zampini v += lda; 9083501a2bdSLois Curfman McInnes } 9095f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseRestoreArrayRead(a->A,(const PetscScalar**)&v)); 9105f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFree(rwork)); 9115f80ce2aSJacob Faibussowitsch CHKERRQ(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY)); 9125f80ce2aSJacob Faibussowitsch CHKERRQ(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY)); 913cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) { 9143501a2bdSLois Curfman McInnes *matout = B; 9153501a2bdSLois Curfman McInnes } else { 9165f80ce2aSJacob Faibussowitsch CHKERRQ(MatHeaderMerge(A,&B)); 9173501a2bdSLois Curfman McInnes } 9183a40ed3dSBarry Smith PetscFunctionReturn(0); 919096963f5SLois Curfman McInnes } 920096963f5SLois Curfman McInnes 9216849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat*); 92252c5f739Sprj- PETSC_INTERN PetscErrorCode MatScale_MPIDense(Mat,PetscScalar); 9238965ea79SLois Curfman McInnes 9244994cf47SJed Brown PetscErrorCode MatSetUp_MPIDense(Mat A) 925273d9f13SBarry Smith { 926273d9f13SBarry Smith PetscFunctionBegin; 9275f80ce2aSJacob Faibussowitsch CHKERRQ(PetscLayoutSetUp(A->rmap)); 9285f80ce2aSJacob Faibussowitsch CHKERRQ(PetscLayoutSetUp(A->cmap)); 92918992e5dSStefano Zampini if (!A->preallocated) { 9305f80ce2aSJacob Faibussowitsch CHKERRQ(MatMPIDenseSetPreallocation(A,NULL)); 93118992e5dSStefano Zampini } 932273d9f13SBarry Smith PetscFunctionReturn(0); 933273d9f13SBarry Smith } 934273d9f13SBarry Smith 935488007eeSBarry Smith PetscErrorCode MatAXPY_MPIDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str) 936488007eeSBarry Smith { 937488007eeSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)Y->data, *B = (Mat_MPIDense*)X->data; 938488007eeSBarry Smith 939488007eeSBarry Smith PetscFunctionBegin; 9405f80ce2aSJacob Faibussowitsch CHKERRQ(MatAXPY(A->A,alpha,B->A,str)); 941488007eeSBarry Smith PetscFunctionReturn(0); 942488007eeSBarry Smith } 943488007eeSBarry Smith 9447087cfbeSBarry Smith PetscErrorCode MatConjugate_MPIDense(Mat mat) 945ba337c44SJed Brown { 946ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)mat->data; 947ba337c44SJed Brown 948ba337c44SJed Brown PetscFunctionBegin; 9495f80ce2aSJacob Faibussowitsch CHKERRQ(MatConjugate(a->A)); 950ba337c44SJed Brown PetscFunctionReturn(0); 951ba337c44SJed Brown } 952ba337c44SJed Brown 953ba337c44SJed Brown PetscErrorCode MatRealPart_MPIDense(Mat A) 954ba337c44SJed Brown { 955ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 956ba337c44SJed Brown 957ba337c44SJed Brown PetscFunctionBegin; 9585f80ce2aSJacob Faibussowitsch CHKERRQ(MatRealPart(a->A)); 959ba337c44SJed Brown PetscFunctionReturn(0); 960ba337c44SJed Brown } 961ba337c44SJed Brown 962ba337c44SJed Brown PetscErrorCode MatImaginaryPart_MPIDense(Mat A) 963ba337c44SJed Brown { 964ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 965ba337c44SJed Brown 966ba337c44SJed Brown PetscFunctionBegin; 9675f80ce2aSJacob Faibussowitsch CHKERRQ(MatImaginaryPart(a->A)); 968ba337c44SJed Brown PetscFunctionReturn(0); 969ba337c44SJed Brown } 970ba337c44SJed Brown 97149a6ff4bSBarry Smith static PetscErrorCode MatGetColumnVector_MPIDense(Mat A,Vec v,PetscInt col) 97249a6ff4bSBarry Smith { 973637a0070SStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*) A->data; 97449a6ff4bSBarry Smith 97549a6ff4bSBarry Smith PetscFunctionBegin; 976*28b400f6SJacob Faibussowitsch PetscCheck(a->A,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Missing local matrix"); 977*28b400f6SJacob Faibussowitsch PetscCheck(a->A->ops->getcolumnvector,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Missing get column operation"); 9785f80ce2aSJacob Faibussowitsch CHKERRQ((*a->A->ops->getcolumnvector)(a->A,v,col)); 97949a6ff4bSBarry Smith PetscFunctionReturn(0); 98049a6ff4bSBarry Smith } 98149a6ff4bSBarry Smith 982857cbf51SRichard Tran Mills PETSC_INTERN PetscErrorCode MatGetColumnReductions_SeqDense(Mat,PetscInt,PetscReal*); 98352c5f739Sprj- 984857cbf51SRichard Tran Mills PetscErrorCode MatGetColumnReductions_MPIDense(Mat A,PetscInt type,PetscReal *reductions) 9850716a85fSBarry Smith { 986a873a8cdSSam Reynolds PetscInt i,m,n; 9870716a85fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*) A->data; 9880716a85fSBarry Smith PetscReal *work; 9890716a85fSBarry Smith 9900716a85fSBarry Smith PetscFunctionBegin; 9915f80ce2aSJacob Faibussowitsch CHKERRQ(MatGetSize(A,&m,&n)); 9925f80ce2aSJacob Faibussowitsch CHKERRQ(PetscMalloc1(n,&work)); 993857cbf51SRichard Tran Mills if (type == REDUCTION_MEAN_REALPART) { 9945f80ce2aSJacob Faibussowitsch CHKERRQ(MatGetColumnReductions_SeqDense(a->A,(PetscInt)REDUCTION_SUM_REALPART,work)); 995857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_IMAGINARYPART) { 9965f80ce2aSJacob Faibussowitsch CHKERRQ(MatGetColumnReductions_SeqDense(a->A,(PetscInt)REDUCTION_SUM_IMAGINARYPART,work)); 997a873a8cdSSam Reynolds } else { 9985f80ce2aSJacob Faibussowitsch CHKERRQ(MatGetColumnReductions_SeqDense(a->A,type,work)); 999a873a8cdSSam Reynolds } 1000857cbf51SRichard Tran Mills if (type == NORM_2) { 10010716a85fSBarry Smith for (i=0; i<n; i++) work[i] *= work[i]; 10020716a85fSBarry Smith } 1003857cbf51SRichard Tran Mills if (type == NORM_INFINITY) { 10045f80ce2aSJacob Faibussowitsch CHKERRMPI(MPIU_Allreduce(work,reductions,n,MPIU_REAL,MPIU_MAX,A->hdr.comm)); 10050716a85fSBarry Smith } else { 10065f80ce2aSJacob Faibussowitsch CHKERRMPI(MPIU_Allreduce(work,reductions,n,MPIU_REAL,MPIU_SUM,A->hdr.comm)); 10070716a85fSBarry Smith } 10085f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFree(work)); 1009857cbf51SRichard Tran Mills if (type == NORM_2) { 1010a873a8cdSSam Reynolds for (i=0; i<n; i++) reductions[i] = PetscSqrtReal(reductions[i]); 1011857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 1012a873a8cdSSam Reynolds for (i=0; i<n; i++) reductions[i] /= m; 10130716a85fSBarry Smith } 10140716a85fSBarry Smith PetscFunctionReturn(0); 10150716a85fSBarry Smith } 10160716a85fSBarry Smith 1017637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 10186947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVec_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10196947451fSStefano Zampini { 10206947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10216947451fSStefano Zampini PetscInt lda; 10226947451fSStefano Zampini 10236947451fSStefano Zampini PetscFunctionBegin; 1024*28b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1025*28b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 10266947451fSStefano Zampini if (!a->cvec) { 10275f80ce2aSJacob Faibussowitsch CHKERRQ(VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 10285f80ce2aSJacob Faibussowitsch CHKERRQ(PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec)); 10296947451fSStefano Zampini } 10306947451fSStefano Zampini a->vecinuse = col + 1; 10315f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseGetLDA(a->A,&lda)); 10325f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseCUDAGetArray(a->A,(PetscScalar**)&a->ptrinuse)); 10335f80ce2aSJacob Faibussowitsch CHKERRQ(VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 10346947451fSStefano Zampini *v = a->cvec; 10356947451fSStefano Zampini PetscFunctionReturn(0); 10366947451fSStefano Zampini } 10376947451fSStefano Zampini 10386947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVec_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10396947451fSStefano Zampini { 10406947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10416947451fSStefano Zampini 10426947451fSStefano Zampini PetscFunctionBegin; 1043*28b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 1044*28b400f6SJacob Faibussowitsch PetscCheck(a->cvec,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector"); 10456947451fSStefano Zampini a->vecinuse = 0; 10465f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseCUDARestoreArray(a->A,(PetscScalar**)&a->ptrinuse)); 10475f80ce2aSJacob Faibussowitsch CHKERRQ(VecCUDAResetArray(a->cvec)); 10486947451fSStefano Zampini *v = NULL; 10496947451fSStefano Zampini PetscFunctionReturn(0); 10506947451fSStefano Zampini } 10516947451fSStefano Zampini 10526947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecRead_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10536947451fSStefano Zampini { 10546947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10556947451fSStefano Zampini PetscInt lda; 10566947451fSStefano Zampini 10576947451fSStefano Zampini PetscFunctionBegin; 1058*28b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1059*28b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 10606947451fSStefano Zampini if (!a->cvec) { 10615f80ce2aSJacob Faibussowitsch CHKERRQ(VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 10625f80ce2aSJacob Faibussowitsch CHKERRQ(PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec)); 10636947451fSStefano Zampini } 10646947451fSStefano Zampini a->vecinuse = col + 1; 10655f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseGetLDA(a->A,&lda)); 10665f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseCUDAGetArrayRead(a->A,&a->ptrinuse)); 10675f80ce2aSJacob Faibussowitsch CHKERRQ(VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 10685f80ce2aSJacob Faibussowitsch CHKERRQ(VecLockReadPush(a->cvec)); 10696947451fSStefano Zampini *v = a->cvec; 10706947451fSStefano Zampini PetscFunctionReturn(0); 10716947451fSStefano Zampini } 10726947451fSStefano Zampini 10736947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecRead_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10746947451fSStefano Zampini { 10756947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10766947451fSStefano Zampini 10776947451fSStefano Zampini PetscFunctionBegin; 1078*28b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 1079*28b400f6SJacob Faibussowitsch PetscCheck(a->cvec,PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 10806947451fSStefano Zampini a->vecinuse = 0; 10815f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseCUDARestoreArrayRead(a->A,&a->ptrinuse)); 10825f80ce2aSJacob Faibussowitsch CHKERRQ(VecLockReadPop(a->cvec)); 10835f80ce2aSJacob Faibussowitsch CHKERRQ(VecCUDAResetArray(a->cvec)); 10846947451fSStefano Zampini *v = NULL; 10856947451fSStefano Zampini PetscFunctionReturn(0); 10866947451fSStefano Zampini } 10876947451fSStefano Zampini 10886947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecWrite_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10896947451fSStefano Zampini { 10906947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10916947451fSStefano Zampini PetscInt lda; 10926947451fSStefano Zampini 10936947451fSStefano Zampini PetscFunctionBegin; 1094*28b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1095*28b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 10966947451fSStefano Zampini if (!a->cvec) { 10975f80ce2aSJacob Faibussowitsch CHKERRQ(VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 10985f80ce2aSJacob Faibussowitsch CHKERRQ(PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec)); 10996947451fSStefano Zampini } 11006947451fSStefano Zampini a->vecinuse = col + 1; 11015f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseGetLDA(a->A,&lda)); 11025f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseCUDAGetArrayWrite(a->A,(PetscScalar**)&a->ptrinuse)); 11035f80ce2aSJacob Faibussowitsch CHKERRQ(VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 11046947451fSStefano Zampini *v = a->cvec; 11056947451fSStefano Zampini PetscFunctionReturn(0); 11066947451fSStefano Zampini } 11076947451fSStefano Zampini 11086947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 11096947451fSStefano Zampini { 11106947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 11116947451fSStefano Zampini 11126947451fSStefano Zampini PetscFunctionBegin; 1113*28b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 1114*28b400f6SJacob Faibussowitsch PetscCheck(a->cvec,PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 11156947451fSStefano Zampini a->vecinuse = 0; 11165f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseCUDARestoreArrayWrite(a->A,(PetscScalar**)&a->ptrinuse)); 11175f80ce2aSJacob Faibussowitsch CHKERRQ(VecCUDAResetArray(a->cvec)); 11186947451fSStefano Zampini *v = NULL; 11196947451fSStefano Zampini PetscFunctionReturn(0); 11206947451fSStefano Zampini } 11216947451fSStefano Zampini 1122637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAPlaceArray_MPIDenseCUDA(Mat A, const PetscScalar *a) 1123637a0070SStefano Zampini { 1124637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1125637a0070SStefano Zampini 1126637a0070SStefano Zampini PetscFunctionBegin; 1127*28b400f6SJacob Faibussowitsch PetscCheck(!l->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1128*28b400f6SJacob Faibussowitsch PetscCheck(!l->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 11295f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseCUDAPlaceArray(l->A,a)); 1130637a0070SStefano Zampini PetscFunctionReturn(0); 1131637a0070SStefano Zampini } 1132637a0070SStefano Zampini 1133637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAResetArray_MPIDenseCUDA(Mat A) 1134637a0070SStefano Zampini { 1135637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1136637a0070SStefano Zampini 1137637a0070SStefano Zampini PetscFunctionBegin; 1138*28b400f6SJacob Faibussowitsch PetscCheck(!l->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1139*28b400f6SJacob Faibussowitsch PetscCheck(!l->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 11405f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseCUDAResetArray(l->A)); 1141637a0070SStefano Zampini PetscFunctionReturn(0); 1142637a0070SStefano Zampini } 1143637a0070SStefano Zampini 1144d5ea218eSStefano Zampini static PetscErrorCode MatDenseCUDAReplaceArray_MPIDenseCUDA(Mat A, const PetscScalar *a) 1145d5ea218eSStefano Zampini { 1146d5ea218eSStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1147d5ea218eSStefano Zampini 1148d5ea218eSStefano Zampini PetscFunctionBegin; 1149*28b400f6SJacob Faibussowitsch PetscCheck(!l->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1150*28b400f6SJacob Faibussowitsch PetscCheck(!l->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 11515f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseCUDAReplaceArray(l->A,a)); 1152d5ea218eSStefano Zampini PetscFunctionReturn(0); 1153d5ea218eSStefano Zampini } 1154d5ea218eSStefano Zampini 1155637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArrayWrite_MPIDenseCUDA(Mat A, PetscScalar **a) 1156637a0070SStefano Zampini { 1157637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1158637a0070SStefano Zampini 1159637a0070SStefano Zampini PetscFunctionBegin; 11605f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseCUDAGetArrayWrite(l->A,a)); 1161637a0070SStefano Zampini PetscFunctionReturn(0); 1162637a0070SStefano Zampini } 1163637a0070SStefano Zampini 1164637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArrayWrite_MPIDenseCUDA(Mat A, PetscScalar **a) 1165637a0070SStefano Zampini { 1166637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1167637a0070SStefano Zampini 1168637a0070SStefano Zampini PetscFunctionBegin; 11695f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseCUDARestoreArrayWrite(l->A,a)); 1170637a0070SStefano Zampini PetscFunctionReturn(0); 1171637a0070SStefano Zampini } 1172637a0070SStefano Zampini 1173637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArrayRead_MPIDenseCUDA(Mat A, const PetscScalar **a) 1174637a0070SStefano Zampini { 1175637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1176637a0070SStefano Zampini 1177637a0070SStefano Zampini PetscFunctionBegin; 11785f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseCUDAGetArrayRead(l->A,a)); 1179637a0070SStefano Zampini PetscFunctionReturn(0); 1180637a0070SStefano Zampini } 1181637a0070SStefano Zampini 1182637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArrayRead_MPIDenseCUDA(Mat A, const PetscScalar **a) 1183637a0070SStefano Zampini { 1184637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1185637a0070SStefano Zampini 1186637a0070SStefano Zampini PetscFunctionBegin; 11875f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseCUDARestoreArrayRead(l->A,a)); 1188637a0070SStefano Zampini PetscFunctionReturn(0); 1189637a0070SStefano Zampini } 1190637a0070SStefano Zampini 1191637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArray_MPIDenseCUDA(Mat A, PetscScalar **a) 1192637a0070SStefano Zampini { 1193637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1194637a0070SStefano Zampini 1195637a0070SStefano Zampini PetscFunctionBegin; 11965f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseCUDAGetArray(l->A,a)); 1197637a0070SStefano Zampini PetscFunctionReturn(0); 1198637a0070SStefano Zampini } 1199637a0070SStefano Zampini 1200637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArray_MPIDenseCUDA(Mat A, PetscScalar **a) 1201637a0070SStefano Zampini { 1202637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1203637a0070SStefano Zampini 1204637a0070SStefano Zampini PetscFunctionBegin; 12055f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseCUDARestoreArray(l->A,a)); 1206637a0070SStefano Zampini PetscFunctionReturn(0); 1207637a0070SStefano Zampini } 1208637a0070SStefano Zampini 12096947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecWrite_MPIDense(Mat,PetscInt,Vec*); 12106947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecRead_MPIDense(Mat,PetscInt,Vec*); 12116947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVec_MPIDense(Mat,PetscInt,Vec*); 12126947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDense(Mat,PetscInt,Vec*); 12136947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecRead_MPIDense(Mat,PetscInt,Vec*); 12146947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVec_MPIDense(Mat,PetscInt,Vec*); 12155ea7661aSPierre Jolivet static PetscErrorCode MatDenseRestoreSubMatrix_MPIDense(Mat,Mat*); 12166947451fSStefano Zampini 1217637a0070SStefano Zampini static PetscErrorCode MatBindToCPU_MPIDenseCUDA(Mat mat,PetscBool bind) 1218637a0070SStefano Zampini { 1219637a0070SStefano Zampini Mat_MPIDense *d = (Mat_MPIDense*)mat->data; 1220637a0070SStefano Zampini 1221637a0070SStefano Zampini PetscFunctionBegin; 1222*28b400f6SJacob Faibussowitsch PetscCheck(!d->vecinuse,PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1223*28b400f6SJacob Faibussowitsch PetscCheck(!d->matinuse,PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1224637a0070SStefano Zampini if (d->A) { 12255f80ce2aSJacob Faibussowitsch CHKERRQ(MatBindToCPU(d->A,bind)); 1226637a0070SStefano Zampini } 1227637a0070SStefano Zampini mat->boundtocpu = bind; 12286947451fSStefano Zampini if (!bind) { 12296947451fSStefano Zampini PetscBool iscuda; 12306947451fSStefano Zampini 12315f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectTypeCompare((PetscObject)d->cvec,VECMPICUDA,&iscuda)); 12326947451fSStefano Zampini if (!iscuda) { 12335f80ce2aSJacob Faibussowitsch CHKERRQ(VecDestroy(&d->cvec)); 1234616b8fbbSStefano Zampini } 12355f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectTypeCompare((PetscObject)d->cmat,MATMPIDENSECUDA,&iscuda)); 1236616b8fbbSStefano Zampini if (!iscuda) { 12375f80ce2aSJacob Faibussowitsch CHKERRQ(MatDestroy(&d->cmat)); 12386947451fSStefano Zampini } 12395f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDenseCUDA)); 12405f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDenseCUDA)); 12415f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDenseCUDA)); 12425f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDenseCUDA)); 12435f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDenseCUDA)); 12445f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDenseCUDA)); 12456947451fSStefano Zampini } else { 12465f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDense)); 12475f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDense)); 12485f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDense)); 12495f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDense)); 12505f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDense)); 12515f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDense)); 1252616b8fbbSStefano Zampini } 1253616b8fbbSStefano Zampini if (d->cmat) { 12545f80ce2aSJacob Faibussowitsch CHKERRQ(MatBindToCPU(d->cmat,bind)); 12556947451fSStefano Zampini } 1256637a0070SStefano Zampini PetscFunctionReturn(0); 1257637a0070SStefano Zampini } 1258637a0070SStefano Zampini 1259637a0070SStefano Zampini PetscErrorCode MatMPIDenseCUDASetPreallocation(Mat A, PetscScalar *d_data) 1260637a0070SStefano Zampini { 1261637a0070SStefano Zampini Mat_MPIDense *d = (Mat_MPIDense*)A->data; 1262637a0070SStefano Zampini PetscBool iscuda; 1263637a0070SStefano Zampini 1264637a0070SStefano Zampini PetscFunctionBegin; 1265d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 12665f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectTypeCompare((PetscObject)A,MATMPIDENSECUDA,&iscuda)); 1267637a0070SStefano Zampini if (!iscuda) PetscFunctionReturn(0); 12685f80ce2aSJacob Faibussowitsch CHKERRQ(PetscLayoutSetUp(A->rmap)); 12695f80ce2aSJacob Faibussowitsch CHKERRQ(PetscLayoutSetUp(A->cmap)); 1270637a0070SStefano Zampini if (!d->A) { 12715f80ce2aSJacob Faibussowitsch CHKERRQ(MatCreate(PETSC_COMM_SELF,&d->A)); 12725f80ce2aSJacob Faibussowitsch CHKERRQ(PetscLogObjectParent((PetscObject)A,(PetscObject)d->A)); 12735f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetSizes(d->A,A->rmap->n,A->cmap->N,A->rmap->n,A->cmap->N)); 1274637a0070SStefano Zampini } 12755f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetType(d->A,MATSEQDENSECUDA)); 12765f80ce2aSJacob Faibussowitsch CHKERRQ(MatSeqDenseCUDASetPreallocation(d->A,d_data)); 1277637a0070SStefano Zampini A->preallocated = PETSC_TRUE; 1278637a0070SStefano Zampini PetscFunctionReturn(0); 1279637a0070SStefano Zampini } 1280637a0070SStefano Zampini #endif 1281637a0070SStefano Zampini 128273a71a0fSBarry Smith static PetscErrorCode MatSetRandom_MPIDense(Mat x,PetscRandom rctx) 128373a71a0fSBarry Smith { 128473a71a0fSBarry Smith Mat_MPIDense *d = (Mat_MPIDense*)x->data; 128573a71a0fSBarry Smith 128673a71a0fSBarry Smith PetscFunctionBegin; 12875f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetRandom(d->A,rctx)); 128873a71a0fSBarry Smith PetscFunctionReturn(0); 128973a71a0fSBarry Smith } 129073a71a0fSBarry Smith 12913b49f96aSBarry Smith static PetscErrorCode MatMissingDiagonal_MPIDense(Mat A,PetscBool *missing,PetscInt *d) 12923b49f96aSBarry Smith { 12933b49f96aSBarry Smith PetscFunctionBegin; 12943b49f96aSBarry Smith *missing = PETSC_FALSE; 12953b49f96aSBarry Smith PetscFunctionReturn(0); 12963b49f96aSBarry Smith } 12973b49f96aSBarry Smith 12984222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat,Mat,PetscReal,Mat); 1299cc48ffa7SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat,Mat,Mat); 13006718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat,Mat,PetscReal,Mat); 1301a1f9a5e6SStefano Zampini static PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat,Mat,Mat); 13026718818eSStefano Zampini static PetscErrorCode MatEqual_MPIDense(Mat,Mat,PetscBool*); 13036718818eSStefano Zampini static PetscErrorCode MatLoad_MPIDense(Mat,PetscViewer); 1304cc48ffa7SToby Isaac 13058965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/ 130609dc0095SBarry Smith static struct _MatOps MatOps_Values = { MatSetValues_MPIDense, 130709dc0095SBarry Smith MatGetRow_MPIDense, 130809dc0095SBarry Smith MatRestoreRow_MPIDense, 130909dc0095SBarry Smith MatMult_MPIDense, 131097304618SKris Buschelman /* 4*/ MatMultAdd_MPIDense, 13117c922b88SBarry Smith MatMultTranspose_MPIDense, 13127c922b88SBarry Smith MatMultTransposeAdd_MPIDense, 1313f4259b30SLisandro Dalcin NULL, 1314f4259b30SLisandro Dalcin NULL, 1315f4259b30SLisandro Dalcin NULL, 1316f4259b30SLisandro Dalcin /* 10*/ NULL, 1317f4259b30SLisandro Dalcin NULL, 1318f4259b30SLisandro Dalcin NULL, 1319f4259b30SLisandro Dalcin NULL, 132009dc0095SBarry Smith MatTranspose_MPIDense, 132197304618SKris Buschelman /* 15*/ MatGetInfo_MPIDense, 13226e4ee0c6SHong Zhang MatEqual_MPIDense, 132309dc0095SBarry Smith MatGetDiagonal_MPIDense, 13245b2fa520SLois Curfman McInnes MatDiagonalScale_MPIDense, 132509dc0095SBarry Smith MatNorm_MPIDense, 132697304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPIDense, 132709dc0095SBarry Smith MatAssemblyEnd_MPIDense, 132809dc0095SBarry Smith MatSetOption_MPIDense, 132909dc0095SBarry Smith MatZeroEntries_MPIDense, 1330d519adbfSMatthew Knepley /* 24*/ MatZeroRows_MPIDense, 1331f4259b30SLisandro Dalcin NULL, 1332f4259b30SLisandro Dalcin NULL, 1333f4259b30SLisandro Dalcin NULL, 1334f4259b30SLisandro Dalcin NULL, 13354994cf47SJed Brown /* 29*/ MatSetUp_MPIDense, 1336f4259b30SLisandro Dalcin NULL, 1337f4259b30SLisandro Dalcin NULL, 1338c56a70eeSBarry Smith MatGetDiagonalBlock_MPIDense, 1339f4259b30SLisandro Dalcin NULL, 1340d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPIDense, 1341f4259b30SLisandro Dalcin NULL, 1342f4259b30SLisandro Dalcin NULL, 1343f4259b30SLisandro Dalcin NULL, 1344f4259b30SLisandro Dalcin NULL, 1345d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPIDense, 13467dae84e0SHong Zhang MatCreateSubMatrices_MPIDense, 1347f4259b30SLisandro Dalcin NULL, 134809dc0095SBarry Smith MatGetValues_MPIDense, 1349a76f77c3SStefano Zampini MatCopy_MPIDense, 1350f4259b30SLisandro Dalcin /* 44*/ NULL, 135109dc0095SBarry Smith MatScale_MPIDense, 13527d68702bSBarry Smith MatShift_Basic, 1353f4259b30SLisandro Dalcin NULL, 1354f4259b30SLisandro Dalcin NULL, 135573a71a0fSBarry Smith /* 49*/ MatSetRandom_MPIDense, 1356f4259b30SLisandro Dalcin NULL, 1357f4259b30SLisandro Dalcin NULL, 1358f4259b30SLisandro Dalcin NULL, 1359f4259b30SLisandro Dalcin NULL, 1360f4259b30SLisandro Dalcin /* 54*/ NULL, 1361f4259b30SLisandro Dalcin NULL, 1362f4259b30SLisandro Dalcin NULL, 1363f4259b30SLisandro Dalcin NULL, 1364f4259b30SLisandro Dalcin NULL, 13657dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPIDense, 1366b9b97703SBarry Smith MatDestroy_MPIDense, 1367b9b97703SBarry Smith MatView_MPIDense, 1368f4259b30SLisandro Dalcin NULL, 1369f4259b30SLisandro Dalcin NULL, 1370f4259b30SLisandro Dalcin /* 64*/ NULL, 1371f4259b30SLisandro Dalcin NULL, 1372f4259b30SLisandro Dalcin NULL, 1373f4259b30SLisandro Dalcin NULL, 1374f4259b30SLisandro Dalcin NULL, 1375f4259b30SLisandro Dalcin /* 69*/ NULL, 1376f4259b30SLisandro Dalcin NULL, 1377f4259b30SLisandro Dalcin NULL, 1378f4259b30SLisandro Dalcin NULL, 1379f4259b30SLisandro Dalcin NULL, 1380f4259b30SLisandro Dalcin /* 74*/ NULL, 1381f4259b30SLisandro Dalcin NULL, 1382f4259b30SLisandro Dalcin NULL, 1383f4259b30SLisandro Dalcin NULL, 1384f4259b30SLisandro Dalcin NULL, 1385f4259b30SLisandro Dalcin /* 79*/ NULL, 1386f4259b30SLisandro Dalcin NULL, 1387f4259b30SLisandro Dalcin NULL, 1388f4259b30SLisandro Dalcin NULL, 13895bba2384SShri Abhyankar /* 83*/ MatLoad_MPIDense, 1390f4259b30SLisandro Dalcin NULL, 1391f4259b30SLisandro Dalcin NULL, 1392f4259b30SLisandro Dalcin NULL, 1393f4259b30SLisandro Dalcin NULL, 1394f4259b30SLisandro Dalcin NULL, 1395f4259b30SLisandro Dalcin /* 89*/ NULL, 1396f4259b30SLisandro Dalcin NULL, 1397f4259b30SLisandro Dalcin NULL, 1398f4259b30SLisandro Dalcin NULL, 1399f4259b30SLisandro Dalcin NULL, 1400f4259b30SLisandro Dalcin /* 94*/ NULL, 1401f4259b30SLisandro Dalcin NULL, 14026718818eSStefano Zampini MatMatTransposeMultSymbolic_MPIDense_MPIDense, 1403cc48ffa7SToby Isaac MatMatTransposeMultNumeric_MPIDense_MPIDense, 1404f4259b30SLisandro Dalcin NULL, 14054222ddf1SHong Zhang /* 99*/ MatProductSetFromOptions_MPIDense, 1406f4259b30SLisandro Dalcin NULL, 1407f4259b30SLisandro Dalcin NULL, 1408ba337c44SJed Brown MatConjugate_MPIDense, 1409f4259b30SLisandro Dalcin NULL, 1410f4259b30SLisandro Dalcin /*104*/ NULL, 1411ba337c44SJed Brown MatRealPart_MPIDense, 1412ba337c44SJed Brown MatImaginaryPart_MPIDense, 1413f4259b30SLisandro Dalcin NULL, 1414f4259b30SLisandro Dalcin NULL, 1415f4259b30SLisandro Dalcin /*109*/ NULL, 1416f4259b30SLisandro Dalcin NULL, 1417f4259b30SLisandro Dalcin NULL, 141849a6ff4bSBarry Smith MatGetColumnVector_MPIDense, 14193b49f96aSBarry Smith MatMissingDiagonal_MPIDense, 1420f4259b30SLisandro Dalcin /*114*/ NULL, 1421f4259b30SLisandro Dalcin NULL, 1422f4259b30SLisandro Dalcin NULL, 1423f4259b30SLisandro Dalcin NULL, 1424f4259b30SLisandro Dalcin NULL, 1425f4259b30SLisandro Dalcin /*119*/ NULL, 1426f4259b30SLisandro Dalcin NULL, 1427f4259b30SLisandro Dalcin NULL, 1428f4259b30SLisandro Dalcin NULL, 1429f4259b30SLisandro Dalcin NULL, 1430f4259b30SLisandro Dalcin /*124*/ NULL, 1431a873a8cdSSam Reynolds MatGetColumnReductions_MPIDense, 1432f4259b30SLisandro Dalcin NULL, 1433f4259b30SLisandro Dalcin NULL, 1434f4259b30SLisandro Dalcin NULL, 1435f4259b30SLisandro Dalcin /*129*/ NULL, 1436f4259b30SLisandro Dalcin NULL, 14376718818eSStefano Zampini MatTransposeMatMultSymbolic_MPIDense_MPIDense, 1438cb20be35SHong Zhang MatTransposeMatMultNumeric_MPIDense_MPIDense, 1439f4259b30SLisandro Dalcin NULL, 1440f4259b30SLisandro Dalcin /*134*/ NULL, 1441f4259b30SLisandro Dalcin NULL, 1442f4259b30SLisandro Dalcin NULL, 1443f4259b30SLisandro Dalcin NULL, 1444f4259b30SLisandro Dalcin NULL, 1445f4259b30SLisandro Dalcin /*139*/ NULL, 1446f4259b30SLisandro Dalcin NULL, 1447f4259b30SLisandro Dalcin NULL, 1448f4259b30SLisandro Dalcin NULL, 1449f4259b30SLisandro Dalcin NULL, 14504222ddf1SHong Zhang MatCreateMPIMatConcatenateSeqMat_MPIDense, 1451f4259b30SLisandro Dalcin /*145*/ NULL, 1452f4259b30SLisandro Dalcin NULL, 1453f4259b30SLisandro Dalcin NULL 1454ba337c44SJed Brown }; 14558965ea79SLois Curfman McInnes 14567087cfbeSBarry Smith PetscErrorCode MatMPIDenseSetPreallocation_MPIDense(Mat mat,PetscScalar *data) 1457a23d5eceSKris Buschelman { 1458637a0070SStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)mat->data; 1459637a0070SStefano Zampini PetscBool iscuda; 1460a23d5eceSKris Buschelman 1461a23d5eceSKris Buschelman PetscFunctionBegin; 1462*28b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 14635f80ce2aSJacob Faibussowitsch CHKERRQ(PetscLayoutSetUp(mat->rmap)); 14645f80ce2aSJacob Faibussowitsch CHKERRQ(PetscLayoutSetUp(mat->cmap)); 1465637a0070SStefano Zampini if (!a->A) { 14665f80ce2aSJacob Faibussowitsch CHKERRQ(MatCreate(PETSC_COMM_SELF,&a->A)); 14675f80ce2aSJacob Faibussowitsch CHKERRQ(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A)); 14685f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetSizes(a->A,mat->rmap->n,mat->cmap->N,mat->rmap->n,mat->cmap->N)); 1469637a0070SStefano Zampini } 14705f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectTypeCompare((PetscObject)mat,MATMPIDENSECUDA,&iscuda)); 14715f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetType(a->A,iscuda ? MATSEQDENSECUDA : MATSEQDENSE)); 14725f80ce2aSJacob Faibussowitsch CHKERRQ(MatSeqDenseSetPreallocation(a->A,data)); 1473637a0070SStefano Zampini mat->preallocated = PETSC_TRUE; 1474a23d5eceSKris Buschelman PetscFunctionReturn(0); 1475a23d5eceSKris Buschelman } 1476a23d5eceSKris Buschelman 14774e29119aSPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIDense(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 14784e29119aSPierre Jolivet { 14794e29119aSPierre Jolivet Mat B,C; 14804e29119aSPierre Jolivet 14814e29119aSPierre Jolivet PetscFunctionBegin; 14825f80ce2aSJacob Faibussowitsch CHKERRQ(MatMPIAIJGetLocalMat(A,MAT_INITIAL_MATRIX,&C)); 14835f80ce2aSJacob Faibussowitsch CHKERRQ(MatConvert_SeqAIJ_SeqDense(C,MATSEQDENSE,MAT_INITIAL_MATRIX,&B)); 14845f80ce2aSJacob Faibussowitsch CHKERRQ(MatDestroy(&C)); 14854e29119aSPierre Jolivet if (reuse == MAT_REUSE_MATRIX) { 14864e29119aSPierre Jolivet C = *newmat; 14874e29119aSPierre Jolivet } else C = NULL; 14885f80ce2aSJacob Faibussowitsch CHKERRQ(MatCreateMPIMatConcatenateSeqMat(PetscObjectComm((PetscObject)A),B,A->cmap->n,!C?MAT_INITIAL_MATRIX:MAT_REUSE_MATRIX,&C)); 14895f80ce2aSJacob Faibussowitsch CHKERRQ(MatDestroy(&B)); 14904e29119aSPierre Jolivet if (reuse == MAT_INPLACE_MATRIX) { 14915f80ce2aSJacob Faibussowitsch CHKERRQ(MatHeaderReplace(A,&C)); 14924e29119aSPierre Jolivet } else if (reuse == MAT_INITIAL_MATRIX) *newmat = C; 14934e29119aSPierre Jolivet PetscFunctionReturn(0); 14944e29119aSPierre Jolivet } 14954e29119aSPierre Jolivet 14964e29119aSPierre Jolivet PetscErrorCode MatConvert_MPIDense_MPIAIJ(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 14974e29119aSPierre Jolivet { 14984e29119aSPierre Jolivet Mat B,C; 14994e29119aSPierre Jolivet 15004e29119aSPierre Jolivet PetscFunctionBegin; 15015f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseGetLocalMatrix(A,&C)); 15025f80ce2aSJacob Faibussowitsch CHKERRQ(MatConvert_SeqDense_SeqAIJ(C,MATSEQAIJ,MAT_INITIAL_MATRIX,&B)); 15034e29119aSPierre Jolivet if (reuse == MAT_REUSE_MATRIX) { 15044e29119aSPierre Jolivet C = *newmat; 15054e29119aSPierre Jolivet } else C = NULL; 15065f80ce2aSJacob Faibussowitsch CHKERRQ(MatCreateMPIMatConcatenateSeqMat(PetscObjectComm((PetscObject)A),B,A->cmap->n,!C?MAT_INITIAL_MATRIX:MAT_REUSE_MATRIX,&C)); 15075f80ce2aSJacob Faibussowitsch CHKERRQ(MatDestroy(&B)); 15084e29119aSPierre Jolivet if (reuse == MAT_INPLACE_MATRIX) { 15095f80ce2aSJacob Faibussowitsch CHKERRQ(MatHeaderReplace(A,&C)); 15104e29119aSPierre Jolivet } else if (reuse == MAT_INITIAL_MATRIX) *newmat = C; 15114e29119aSPierre Jolivet PetscFunctionReturn(0); 15124e29119aSPierre Jolivet } 15134e29119aSPierre Jolivet 151465b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 1515cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIDense_Elemental(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 15168baccfbdSHong Zhang { 15178ea901baSHong Zhang Mat mat_elemental; 151832d7a744SHong Zhang PetscScalar *v; 151932d7a744SHong Zhang PetscInt m=A->rmap->n,N=A->cmap->N,rstart=A->rmap->rstart,i,*rows,*cols; 15208ea901baSHong Zhang 15218baccfbdSHong Zhang PetscFunctionBegin; 1522378336b6SHong Zhang if (reuse == MAT_REUSE_MATRIX) { 1523378336b6SHong Zhang mat_elemental = *newmat; 15245f80ce2aSJacob Faibussowitsch CHKERRQ(MatZeroEntries(*newmat)); 1525378336b6SHong Zhang } else { 15265f80ce2aSJacob Faibussowitsch CHKERRQ(MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental)); 15275f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetSizes(mat_elemental,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N)); 15285f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetType(mat_elemental,MATELEMENTAL)); 15295f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetUp(mat_elemental)); 15305f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetOption(mat_elemental,MAT_ROW_ORIENTED,PETSC_FALSE)); 1531378336b6SHong Zhang } 1532378336b6SHong Zhang 15335f80ce2aSJacob Faibussowitsch CHKERRQ(PetscMalloc2(m,&rows,N,&cols)); 153432d7a744SHong Zhang for (i=0; i<N; i++) cols[i] = i; 153532d7a744SHong Zhang for (i=0; i<m; i++) rows[i] = rstart + i; 15368ea901baSHong Zhang 1537637a0070SStefano Zampini /* PETSc-Elemental interface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */ 15385f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseGetArray(A,&v)); 15395f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetValues(mat_elemental,m,rows,N,cols,v,ADD_VALUES)); 15405f80ce2aSJacob Faibussowitsch CHKERRQ(MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY)); 15415f80ce2aSJacob Faibussowitsch CHKERRQ(MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY)); 15425f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseRestoreArray(A,&v)); 15435f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFree2(rows,cols)); 15448ea901baSHong Zhang 1545511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 15465f80ce2aSJacob Faibussowitsch CHKERRQ(MatHeaderReplace(A,&mat_elemental)); 15478ea901baSHong Zhang } else { 15488ea901baSHong Zhang *newmat = mat_elemental; 15498ea901baSHong Zhang } 15508baccfbdSHong Zhang PetscFunctionReturn(0); 15518baccfbdSHong Zhang } 155265b80a83SHong Zhang #endif 15538baccfbdSHong Zhang 1554af53bab2SHong Zhang static PetscErrorCode MatDenseGetColumn_MPIDense(Mat A,PetscInt col,PetscScalar **vals) 155586aefd0dSHong Zhang { 155686aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 155786aefd0dSHong Zhang 155886aefd0dSHong Zhang PetscFunctionBegin; 15595f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseGetColumn(mat->A,col,vals)); 156086aefd0dSHong Zhang PetscFunctionReturn(0); 156186aefd0dSHong Zhang } 156286aefd0dSHong Zhang 1563af53bab2SHong Zhang static PetscErrorCode MatDenseRestoreColumn_MPIDense(Mat A,PetscScalar **vals) 156486aefd0dSHong Zhang { 156586aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 156686aefd0dSHong Zhang 156786aefd0dSHong Zhang PetscFunctionBegin; 15685f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseRestoreColumn(mat->A,vals)); 156986aefd0dSHong Zhang PetscFunctionReturn(0); 157086aefd0dSHong Zhang } 157186aefd0dSHong Zhang 157294e2cb23SJakub Kruzik PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIDense(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 157394e2cb23SJakub Kruzik { 157494e2cb23SJakub Kruzik Mat_MPIDense *mat; 157594e2cb23SJakub Kruzik PetscInt m,nloc,N; 157694e2cb23SJakub Kruzik 157794e2cb23SJakub Kruzik PetscFunctionBegin; 15785f80ce2aSJacob Faibussowitsch CHKERRQ(MatGetSize(inmat,&m,&N)); 15795f80ce2aSJacob Faibussowitsch CHKERRQ(MatGetLocalSize(inmat,NULL,&nloc)); 158094e2cb23SJakub Kruzik if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 158194e2cb23SJakub Kruzik PetscInt sum; 158294e2cb23SJakub Kruzik 158394e2cb23SJakub Kruzik if (n == PETSC_DECIDE) { 15845f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSplitOwnership(comm,&n,&N)); 158594e2cb23SJakub Kruzik } 158694e2cb23SJakub Kruzik /* Check sum(n) = N */ 15875f80ce2aSJacob Faibussowitsch CHKERRMPI(MPIU_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm)); 15882c71b3e2SJacob Faibussowitsch PetscCheckFalse(sum != N,PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns %" PetscInt_FMT " != global columns %" PetscInt_FMT,sum,N); 158994e2cb23SJakub Kruzik 15905f80ce2aSJacob Faibussowitsch CHKERRQ(MatCreateDense(comm,m,n,PETSC_DETERMINE,N,NULL,outmat)); 15915f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetOption(*outmat,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE)); 159294e2cb23SJakub Kruzik } 159394e2cb23SJakub Kruzik 159494e2cb23SJakub Kruzik /* numeric phase */ 159594e2cb23SJakub Kruzik mat = (Mat_MPIDense*)(*outmat)->data; 15965f80ce2aSJacob Faibussowitsch CHKERRQ(MatCopy(inmat,mat->A,SAME_NONZERO_PATTERN)); 15975f80ce2aSJacob Faibussowitsch CHKERRQ(MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY)); 15985f80ce2aSJacob Faibussowitsch CHKERRQ(MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY)); 159994e2cb23SJakub Kruzik PetscFunctionReturn(0); 160094e2cb23SJakub Kruzik } 160194e2cb23SJakub Kruzik 1602637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1603637a0070SStefano Zampini PetscErrorCode MatConvert_MPIDenseCUDA_MPIDense(Mat M,MatType type,MatReuse reuse,Mat *newmat) 1604637a0070SStefano Zampini { 1605637a0070SStefano Zampini Mat B; 1606637a0070SStefano Zampini Mat_MPIDense *m; 1607637a0070SStefano Zampini 1608637a0070SStefano Zampini PetscFunctionBegin; 1609637a0070SStefano Zampini if (reuse == MAT_INITIAL_MATRIX) { 16105f80ce2aSJacob Faibussowitsch CHKERRQ(MatDuplicate(M,MAT_COPY_VALUES,newmat)); 1611637a0070SStefano Zampini } else if (reuse == MAT_REUSE_MATRIX) { 16125f80ce2aSJacob Faibussowitsch CHKERRQ(MatCopy(M,*newmat,SAME_NONZERO_PATTERN)); 1613637a0070SStefano Zampini } 1614637a0070SStefano Zampini 1615637a0070SStefano Zampini B = *newmat; 16165f80ce2aSJacob Faibussowitsch CHKERRQ(MatBindToCPU_MPIDenseCUDA(B,PETSC_TRUE)); 16175f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFree(B->defaultvectype)); 16185f80ce2aSJacob Faibussowitsch CHKERRQ(PetscStrallocpy(VECSTANDARD,&B->defaultvectype)); 16195f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectChangeTypeName((PetscObject)B,MATMPIDENSE)); 16205f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpidensecuda_mpidense_C",NULL)); 16215f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaij_mpidensecuda_C",NULL)); 16225f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaijcusparse_mpidensecuda_C",NULL)); 16235f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaij_C",NULL)); 16245f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaijcusparse_C",NULL)); 16255f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArray_C",NULL)); 16265f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayRead_C",NULL)); 16275f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayWrite_C",NULL)); 16285f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArray_C",NULL)); 16295f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayRead_C",NULL)); 16305f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayWrite_C",NULL)); 16315f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAPlaceArray_C",NULL)); 16325f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAResetArray_C",NULL)); 16335f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAReplaceArray_C",NULL)); 1634637a0070SStefano Zampini m = (Mat_MPIDense*)(B)->data; 1635637a0070SStefano Zampini if (m->A) { 16365f80ce2aSJacob Faibussowitsch CHKERRQ(MatConvert(m->A,MATSEQDENSE,MAT_INPLACE_MATRIX,&m->A)); 16375f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetUpMultiply_MPIDense(B)); 1638637a0070SStefano Zampini } 1639637a0070SStefano Zampini B->ops->bindtocpu = NULL; 1640637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_CPU; 1641637a0070SStefano Zampini PetscFunctionReturn(0); 1642637a0070SStefano Zampini } 1643637a0070SStefano Zampini 1644637a0070SStefano Zampini PetscErrorCode MatConvert_MPIDense_MPIDenseCUDA(Mat M,MatType type,MatReuse reuse,Mat *newmat) 1645637a0070SStefano Zampini { 1646637a0070SStefano Zampini Mat B; 1647637a0070SStefano Zampini Mat_MPIDense *m; 1648637a0070SStefano Zampini 1649637a0070SStefano Zampini PetscFunctionBegin; 1650637a0070SStefano Zampini if (reuse == MAT_INITIAL_MATRIX) { 16515f80ce2aSJacob Faibussowitsch CHKERRQ(MatDuplicate(M,MAT_COPY_VALUES,newmat)); 1652637a0070SStefano Zampini } else if (reuse == MAT_REUSE_MATRIX) { 16535f80ce2aSJacob Faibussowitsch CHKERRQ(MatCopy(M,*newmat,SAME_NONZERO_PATTERN)); 1654637a0070SStefano Zampini } 1655637a0070SStefano Zampini 1656637a0070SStefano Zampini B = *newmat; 16575f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFree(B->defaultvectype)); 16585f80ce2aSJacob Faibussowitsch CHKERRQ(PetscStrallocpy(VECCUDA,&B->defaultvectype)); 16595f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectChangeTypeName((PetscObject)B,MATMPIDENSECUDA)); 16605f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpidensecuda_mpidense_C", MatConvert_MPIDenseCUDA_MPIDense)); 16615f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaij_mpidensecuda_C", MatProductSetFromOptions_MPIAIJ_MPIDense)); 16625f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaijcusparse_mpidensecuda_C",MatProductSetFromOptions_MPIAIJ_MPIDense)); 16635f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaij_C", MatProductSetFromOptions_MPIDense_MPIAIJ)); 16645f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaijcusparse_C",MatProductSetFromOptions_MPIDense_MPIAIJ)); 16655f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArray_C", MatDenseCUDAGetArray_MPIDenseCUDA)); 16665f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayRead_C", MatDenseCUDAGetArrayRead_MPIDenseCUDA)); 16675f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayWrite_C", MatDenseCUDAGetArrayWrite_MPIDenseCUDA)); 16685f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArray_C", MatDenseCUDARestoreArray_MPIDenseCUDA)); 16695f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayRead_C", MatDenseCUDARestoreArrayRead_MPIDenseCUDA)); 16705f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayWrite_C", MatDenseCUDARestoreArrayWrite_MPIDenseCUDA)); 16715f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAPlaceArray_C", MatDenseCUDAPlaceArray_MPIDenseCUDA)); 16725f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAResetArray_C", MatDenseCUDAResetArray_MPIDenseCUDA)); 16735f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAReplaceArray_C", MatDenseCUDAReplaceArray_MPIDenseCUDA)); 1674f5ff9c66SStefano Zampini m = (Mat_MPIDense*)(B->data); 1675637a0070SStefano Zampini if (m->A) { 16765f80ce2aSJacob Faibussowitsch CHKERRQ(MatConvert(m->A,MATSEQDENSECUDA,MAT_INPLACE_MATRIX,&m->A)); 16775f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetUpMultiply_MPIDense(B)); 1678637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_BOTH; 1679637a0070SStefano Zampini } else { 1680637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_UNALLOCATED; 1681637a0070SStefano Zampini } 16825f80ce2aSJacob Faibussowitsch CHKERRQ(MatBindToCPU_MPIDenseCUDA(B,PETSC_FALSE)); 1683637a0070SStefano Zampini 1684637a0070SStefano Zampini B->ops->bindtocpu = MatBindToCPU_MPIDenseCUDA; 1685637a0070SStefano Zampini PetscFunctionReturn(0); 1686637a0070SStefano Zampini } 1687637a0070SStefano Zampini #endif 1688637a0070SStefano Zampini 16896947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVec_MPIDense(Mat A,PetscInt col,Vec *v) 16906947451fSStefano Zampini { 16916947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 16926947451fSStefano Zampini PetscInt lda; 16936947451fSStefano Zampini 16946947451fSStefano Zampini PetscFunctionBegin; 1695*28b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1696*28b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 16976947451fSStefano Zampini if (!a->cvec) { 16985f80ce2aSJacob Faibussowitsch CHKERRQ(VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 16996947451fSStefano Zampini } 17006947451fSStefano Zampini a->vecinuse = col + 1; 17015f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseGetLDA(a->A,&lda)); 17025f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseGetArray(a->A,(PetscScalar**)&a->ptrinuse)); 17035f80ce2aSJacob Faibussowitsch CHKERRQ(VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 17046947451fSStefano Zampini *v = a->cvec; 17056947451fSStefano Zampini PetscFunctionReturn(0); 17066947451fSStefano Zampini } 17076947451fSStefano Zampini 17086947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVec_MPIDense(Mat A,PetscInt col,Vec *v) 17096947451fSStefano Zampini { 17106947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17116947451fSStefano Zampini 17126947451fSStefano Zampini PetscFunctionBegin; 1713*28b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 1714*28b400f6SJacob Faibussowitsch PetscCheck(a->cvec,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector"); 17156947451fSStefano Zampini a->vecinuse = 0; 17165f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseRestoreArray(a->A,(PetscScalar**)&a->ptrinuse)); 17175f80ce2aSJacob Faibussowitsch CHKERRQ(VecResetArray(a->cvec)); 17186947451fSStefano Zampini *v = NULL; 17196947451fSStefano Zampini PetscFunctionReturn(0); 17206947451fSStefano Zampini } 17216947451fSStefano Zampini 17226947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecRead_MPIDense(Mat A,PetscInt col,Vec *v) 17236947451fSStefano Zampini { 17246947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17256947451fSStefano Zampini PetscInt lda; 17266947451fSStefano Zampini 17276947451fSStefano Zampini PetscFunctionBegin; 1728*28b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1729*28b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 17306947451fSStefano Zampini if (!a->cvec) { 17315f80ce2aSJacob Faibussowitsch CHKERRQ(VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 17326947451fSStefano Zampini } 17336947451fSStefano Zampini a->vecinuse = col + 1; 17345f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseGetLDA(a->A,&lda)); 17355f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseGetArrayRead(a->A,&a->ptrinuse)); 17365f80ce2aSJacob Faibussowitsch CHKERRQ(VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 17375f80ce2aSJacob Faibussowitsch CHKERRQ(VecLockReadPush(a->cvec)); 17386947451fSStefano Zampini *v = a->cvec; 17396947451fSStefano Zampini PetscFunctionReturn(0); 17406947451fSStefano Zampini } 17416947451fSStefano Zampini 17426947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecRead_MPIDense(Mat A,PetscInt col,Vec *v) 17436947451fSStefano Zampini { 17446947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17456947451fSStefano Zampini 17466947451fSStefano Zampini PetscFunctionBegin; 17475f80ce2aSJacob Faibussowitsch PetscCheck(a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 17485f80ce2aSJacob Faibussowitsch PetscCheck(a->cvec,PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 17496947451fSStefano Zampini a->vecinuse = 0; 17505f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseRestoreArrayRead(a->A,&a->ptrinuse)); 17515f80ce2aSJacob Faibussowitsch CHKERRQ(VecLockReadPop(a->cvec)); 17525f80ce2aSJacob Faibussowitsch CHKERRQ(VecResetArray(a->cvec)); 17536947451fSStefano Zampini *v = NULL; 17546947451fSStefano Zampini PetscFunctionReturn(0); 17556947451fSStefano Zampini } 17566947451fSStefano Zampini 17576947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecWrite_MPIDense(Mat A,PetscInt col,Vec *v) 17586947451fSStefano Zampini { 17596947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17606947451fSStefano Zampini PetscInt lda; 17616947451fSStefano Zampini 17626947451fSStefano Zampini PetscFunctionBegin; 17635f80ce2aSJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 17645f80ce2aSJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 17656947451fSStefano Zampini if (!a->cvec) { 17665f80ce2aSJacob Faibussowitsch CHKERRQ(VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 17676947451fSStefano Zampini } 17686947451fSStefano Zampini a->vecinuse = col + 1; 17695f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseGetLDA(a->A,&lda)); 17705f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseGetArrayWrite(a->A,(PetscScalar**)&a->ptrinuse)); 17715f80ce2aSJacob Faibussowitsch CHKERRQ(VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 17726947451fSStefano Zampini *v = a->cvec; 17736947451fSStefano Zampini PetscFunctionReturn(0); 17746947451fSStefano Zampini } 17756947451fSStefano Zampini 17766947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDense(Mat A,PetscInt col,Vec *v) 17776947451fSStefano Zampini { 17786947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17796947451fSStefano Zampini 17806947451fSStefano Zampini PetscFunctionBegin; 17815f80ce2aSJacob Faibussowitsch PetscCheck(a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 17825f80ce2aSJacob Faibussowitsch PetscCheck(a->cvec,PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 17836947451fSStefano Zampini a->vecinuse = 0; 17845f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseRestoreArrayWrite(a->A,(PetscScalar**)&a->ptrinuse)); 17855f80ce2aSJacob Faibussowitsch CHKERRQ(VecResetArray(a->cvec)); 17866947451fSStefano Zampini *v = NULL; 17876947451fSStefano Zampini PetscFunctionReturn(0); 17886947451fSStefano Zampini } 17896947451fSStefano Zampini 17905ea7661aSPierre Jolivet PetscErrorCode MatDenseGetSubMatrix_MPIDense(Mat A,PetscInt cbegin,PetscInt cend,Mat *v) 17915ea7661aSPierre Jolivet { 17925ea7661aSPierre Jolivet Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1793616b8fbbSStefano Zampini Mat_MPIDense *c; 1794616b8fbbSStefano Zampini MPI_Comm comm; 1795616b8fbbSStefano Zampini PetscBool setup = PETSC_FALSE; 17965ea7661aSPierre Jolivet 17975ea7661aSPierre Jolivet PetscFunctionBegin; 17985f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectGetComm((PetscObject)A,&comm)); 17995f80ce2aSJacob Faibussowitsch PetscCheck(!a->vecinuse,comm,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 18005f80ce2aSJacob Faibussowitsch PetscCheck(!a->matinuse,comm,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 18015ea7661aSPierre Jolivet if (!a->cmat) { 1802616b8fbbSStefano Zampini setup = PETSC_TRUE; 18035f80ce2aSJacob Faibussowitsch CHKERRQ(MatCreate(comm,&a->cmat)); 18045f80ce2aSJacob Faibussowitsch CHKERRQ(PetscLogObjectParent((PetscObject)A,(PetscObject)a->cmat)); 18055f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetType(a->cmat,((PetscObject)A)->type_name)); 18065f80ce2aSJacob Faibussowitsch CHKERRQ(PetscLayoutReference(A->rmap,&a->cmat->rmap)); 18075f80ce2aSJacob Faibussowitsch CHKERRQ(PetscLayoutSetSize(a->cmat->cmap,cend-cbegin)); 18085f80ce2aSJacob Faibussowitsch CHKERRQ(PetscLayoutSetUp(a->cmat->cmap)); 1809616b8fbbSStefano Zampini } else if (cend-cbegin != a->cmat->cmap->N) { 1810616b8fbbSStefano Zampini setup = PETSC_TRUE; 18115f80ce2aSJacob Faibussowitsch CHKERRQ(PetscLayoutDestroy(&a->cmat->cmap)); 18125f80ce2aSJacob Faibussowitsch CHKERRQ(PetscLayoutCreate(comm,&a->cmat->cmap)); 18135f80ce2aSJacob Faibussowitsch CHKERRQ(PetscLayoutSetSize(a->cmat->cmap,cend-cbegin)); 18145f80ce2aSJacob Faibussowitsch CHKERRQ(PetscLayoutSetUp(a->cmat->cmap)); 18155ea7661aSPierre Jolivet } 1816616b8fbbSStefano Zampini c = (Mat_MPIDense*)a->cmat->data; 18175f80ce2aSJacob Faibussowitsch PetscCheck(!c->A,comm,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 18185f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseGetSubMatrix(a->A,cbegin,cend,&c->A)); 1819616b8fbbSStefano Zampini if (setup) { /* do we really need this? */ 18205f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetUpMultiply_MPIDense(a->cmat)); 1821616b8fbbSStefano Zampini } 1822616b8fbbSStefano Zampini a->cmat->preallocated = PETSC_TRUE; 1823616b8fbbSStefano Zampini a->cmat->assembled = PETSC_TRUE; 18245ea7661aSPierre Jolivet a->matinuse = cbegin + 1; 18255ea7661aSPierre Jolivet *v = a->cmat; 18265ea7661aSPierre Jolivet PetscFunctionReturn(0); 18275ea7661aSPierre Jolivet } 18285ea7661aSPierre Jolivet 18295ea7661aSPierre Jolivet PetscErrorCode MatDenseRestoreSubMatrix_MPIDense(Mat A,Mat *v) 18305ea7661aSPierre Jolivet { 18315ea7661aSPierre Jolivet Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1832616b8fbbSStefano Zampini Mat_MPIDense *c; 18335ea7661aSPierre Jolivet 18345ea7661aSPierre Jolivet PetscFunctionBegin; 18355f80ce2aSJacob Faibussowitsch PetscCheck(a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetSubMatrix() first"); 18365f80ce2aSJacob Faibussowitsch PetscCheck(a->cmat,PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal matrix"); 18375f80ce2aSJacob Faibussowitsch PetscCheck(*v == a->cmat,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Not the matrix obtained from MatDenseGetSubMatrix()"); 18385ea7661aSPierre Jolivet a->matinuse = 0; 1839616b8fbbSStefano Zampini c = (Mat_MPIDense*)a->cmat->data; 18405f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseRestoreSubMatrix(a->A,&c->A)); 18415ea7661aSPierre Jolivet *v = NULL; 18425ea7661aSPierre Jolivet PetscFunctionReturn(0); 18435ea7661aSPierre Jolivet } 18445ea7661aSPierre Jolivet 1845002bc6daSRichard Tran Mills /*MC 1846002bc6daSRichard Tran Mills MATMPIDENSE - MATMPIDENSE = "mpidense" - A matrix type to be used for distributed dense matrices. 1847002bc6daSRichard Tran Mills 1848002bc6daSRichard Tran Mills Options Database Keys: 1849002bc6daSRichard Tran Mills . -mat_type mpidense - sets the matrix type to "mpidense" during a call to MatSetFromOptions() 1850002bc6daSRichard Tran Mills 1851002bc6daSRichard Tran Mills Level: beginner 1852002bc6daSRichard Tran Mills 1853002bc6daSRichard Tran Mills .seealso: MatCreateDense() 1854002bc6daSRichard Tran Mills 1855002bc6daSRichard Tran Mills M*/ 18568cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIDense(Mat mat) 1857273d9f13SBarry Smith { 1858273d9f13SBarry Smith Mat_MPIDense *a; 1859273d9f13SBarry Smith 1860273d9f13SBarry Smith PetscFunctionBegin; 18615f80ce2aSJacob Faibussowitsch CHKERRQ(PetscNewLog(mat,&a)); 1862b0a32e0cSBarry Smith mat->data = (void*)a; 18635f80ce2aSJacob Faibussowitsch CHKERRQ(PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps))); 1864273d9f13SBarry Smith 1865273d9f13SBarry Smith mat->insertmode = NOT_SET_VALUES; 1866273d9f13SBarry Smith 1867273d9f13SBarry Smith /* build cache for off array entries formed */ 1868273d9f13SBarry Smith a->donotstash = PETSC_FALSE; 18692205254eSKarl Rupp 18705f80ce2aSJacob Faibussowitsch CHKERRQ(MatStashCreate_Private(PetscObjectComm((PetscObject)mat),1,&mat->stash)); 1871273d9f13SBarry Smith 1872273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 1873f4259b30SLisandro Dalcin a->lvec = NULL; 1874f4259b30SLisandro Dalcin a->Mvctx = NULL; 1875273d9f13SBarry Smith a->roworiented = PETSC_TRUE; 1876273d9f13SBarry Smith 18775f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",MatDenseGetLDA_MPIDense)); 18785f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatDenseSetLDA_C",MatDenseSetLDA_MPIDense)); 18795f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",MatDenseGetArray_MPIDense)); 18805f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",MatDenseRestoreArray_MPIDense)); 18815f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",MatDenseGetArrayRead_MPIDense)); 18825f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",MatDenseRestoreArrayRead_MPIDense)); 18835f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayWrite_C",MatDenseGetArrayWrite_MPIDense)); 18845f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayWrite_C",MatDenseRestoreArrayWrite_MPIDense)); 18855f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",MatDensePlaceArray_MPIDense)); 18865f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",MatDenseResetArray_MPIDense)); 18875f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatDenseReplaceArray_C",MatDenseReplaceArray_MPIDense)); 18885f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDense)); 18895f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDense)); 18905f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDense)); 18915f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDense)); 18925f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDense)); 18935f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDense)); 18945f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetSubMatrix_C",MatDenseGetSubMatrix_MPIDense)); 18955f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreSubMatrix_C",MatDenseRestoreSubMatrix_MPIDense)); 18965f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpiaij_mpidense_C",MatConvert_MPIAIJ_MPIDense)); 18975f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_mpiaij_C",MatConvert_MPIDense_MPIAIJ)); 18988baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 18995f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",MatConvert_MPIDense_Elemental)); 19008baccfbdSHong Zhang #endif 1901d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 19025f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_scalapack_C",MatConvert_Dense_ScaLAPACK)); 1903d24d4204SJose E. Roman #endif 1904637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 19055f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_mpidensecuda_C",MatConvert_MPIDense_MPIDenseCUDA)); 1906637a0070SStefano Zampini #endif 19075f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",MatMPIDenseSetPreallocation_MPIDense)); 19085f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaij_mpidense_C",MatProductSetFromOptions_MPIAIJ_MPIDense)); 19095f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaij_C",MatProductSetFromOptions_MPIDense_MPIAIJ)); 19106718818eSStefano Zampini #if defined(PETSC_HAVE_CUDA) 19115f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaijcusparse_mpidense_C",MatProductSetFromOptions_MPIAIJ_MPIDense)); 19125f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaijcusparse_C",MatProductSetFromOptions_MPIDense_MPIAIJ)); 19136718818eSStefano Zampini #endif 19148949adfdSHong Zhang 19155f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",MatDenseGetColumn_MPIDense)); 19165f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",MatDenseRestoreColumn_MPIDense)); 19175f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectChangeTypeName((PetscObject)mat,MATMPIDENSE)); 1918273d9f13SBarry Smith PetscFunctionReturn(0); 1919273d9f13SBarry Smith } 1920273d9f13SBarry Smith 1921209238afSKris Buschelman /*MC 1922637a0070SStefano Zampini MATMPIDENSECUDA - MATMPIDENSECUDA = "mpidensecuda" - A matrix type to be used for distributed dense matrices on GPUs. 1923637a0070SStefano Zampini 1924637a0070SStefano Zampini Options Database Keys: 1925637a0070SStefano Zampini . -mat_type mpidensecuda - sets the matrix type to "mpidensecuda" during a call to MatSetFromOptions() 1926637a0070SStefano Zampini 1927637a0070SStefano Zampini Level: beginner 1928637a0070SStefano Zampini 1929637a0070SStefano Zampini .seealso: 1930637a0070SStefano Zampini 1931637a0070SStefano Zampini M*/ 1932637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1933a4af0ceeSJacob Faibussowitsch #include <petsc/private/deviceimpl.h> 1934637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreate_MPIDenseCUDA(Mat B) 1935637a0070SStefano Zampini { 1936637a0070SStefano Zampini PetscFunctionBegin; 19375f80ce2aSJacob Faibussowitsch CHKERRQ(PetscDeviceInitialize(PETSC_DEVICE_CUDA)); 19385f80ce2aSJacob Faibussowitsch CHKERRQ(MatCreate_MPIDense(B)); 19395f80ce2aSJacob Faibussowitsch CHKERRQ(MatConvert_MPIDense_MPIDenseCUDA(B,MATMPIDENSECUDA,MAT_INPLACE_MATRIX,&B)); 1940637a0070SStefano Zampini PetscFunctionReturn(0); 1941637a0070SStefano Zampini } 1942637a0070SStefano Zampini #endif 1943637a0070SStefano Zampini 1944637a0070SStefano Zampini /*MC 1945002d173eSKris Buschelman MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices. 1946209238afSKris Buschelman 1947209238afSKris Buschelman This matrix type is identical to MATSEQDENSE when constructed with a single process communicator, 1948209238afSKris Buschelman and MATMPIDENSE otherwise. 1949209238afSKris Buschelman 1950209238afSKris Buschelman Options Database Keys: 1951209238afSKris Buschelman . -mat_type dense - sets the matrix type to "dense" during a call to MatSetFromOptions() 1952209238afSKris Buschelman 1953209238afSKris Buschelman Level: beginner 1954209238afSKris Buschelman 19556947451fSStefano Zampini .seealso: MATSEQDENSE,MATMPIDENSE,MATDENSECUDA 19566947451fSStefano Zampini M*/ 19576947451fSStefano Zampini 19586947451fSStefano Zampini /*MC 19596947451fSStefano Zampini MATDENSECUDA - MATDENSECUDA = "densecuda" - A matrix type to be used for dense matrices on GPUs. 19606947451fSStefano Zampini 19616947451fSStefano Zampini This matrix type is identical to MATSEQDENSECUDA when constructed with a single process communicator, 19626947451fSStefano Zampini and MATMPIDENSECUDA otherwise. 19636947451fSStefano Zampini 19646947451fSStefano Zampini Options Database Keys: 19656947451fSStefano Zampini . -mat_type densecuda - sets the matrix type to "densecuda" during a call to MatSetFromOptions() 19666947451fSStefano Zampini 19676947451fSStefano Zampini Level: beginner 19686947451fSStefano Zampini 19696947451fSStefano Zampini .seealso: MATSEQDENSECUDA,MATMPIDENSECUDA,MATDENSE 1970209238afSKris Buschelman M*/ 1971209238afSKris Buschelman 1972273d9f13SBarry Smith /*@C 1973273d9f13SBarry Smith MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries 1974273d9f13SBarry Smith 19758f490ea3SStefano Zampini Collective 1976273d9f13SBarry Smith 1977273d9f13SBarry Smith Input Parameters: 19781c4f3114SJed Brown . B - the matrix 19790298fd71SBarry Smith - data - optional location of matrix data. Set data=NULL for PETSc 1980273d9f13SBarry Smith to control all matrix memory allocation. 1981273d9f13SBarry Smith 1982273d9f13SBarry Smith Notes: 1983273d9f13SBarry Smith The dense format is fully compatible with standard Fortran 77 1984273d9f13SBarry Smith storage by columns. 1985273d9f13SBarry Smith 1986273d9f13SBarry Smith The data input variable is intended primarily for Fortran programmers 1987273d9f13SBarry Smith who wish to allocate their own matrix memory space. Most users should 19880298fd71SBarry Smith set data=NULL. 1989273d9f13SBarry Smith 1990273d9f13SBarry Smith Level: intermediate 1991273d9f13SBarry Smith 1992273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 1993273d9f13SBarry Smith @*/ 19941c4f3114SJed Brown PetscErrorCode MatMPIDenseSetPreallocation(Mat B,PetscScalar *data) 1995273d9f13SBarry Smith { 1996273d9f13SBarry Smith PetscFunctionBegin; 1997d5ea218eSStefano Zampini PetscValidHeaderSpecific(B,MAT_CLASSID,1); 19985f80ce2aSJacob Faibussowitsch CHKERRQ(PetscTryMethod(B,"MatMPIDenseSetPreallocation_C",(Mat,PetscScalar*),(B,data))); 1999273d9f13SBarry Smith PetscFunctionReturn(0); 2000273d9f13SBarry Smith } 2001273d9f13SBarry Smith 2002d3042a70SBarry Smith /*@ 2003637a0070SStefano Zampini MatDensePlaceArray - Allows one to replace the array in a dense matrix with an 2004d3042a70SBarry Smith array provided by the user. This is useful to avoid copying an array 2005d3042a70SBarry Smith into a matrix 2006d3042a70SBarry Smith 2007d3042a70SBarry Smith Not Collective 2008d3042a70SBarry Smith 2009d3042a70SBarry Smith Input Parameters: 2010d3042a70SBarry Smith + mat - the matrix 2011d3042a70SBarry Smith - array - the array in column major order 2012d3042a70SBarry Smith 2013d3042a70SBarry Smith Notes: 2014d3042a70SBarry Smith You can return to the original array with a call to MatDenseResetArray(). The user is responsible for freeing this array; it will not be 2015d3042a70SBarry Smith freed when the matrix is destroyed. 2016d3042a70SBarry Smith 2017d3042a70SBarry Smith Level: developer 2018d3042a70SBarry Smith 2019d3042a70SBarry Smith .seealso: MatDenseGetArray(), MatDenseResetArray(), VecPlaceArray(), VecGetArray(), VecRestoreArray(), VecReplaceArray(), VecResetArray() 2020d3042a70SBarry Smith 2021d3042a70SBarry Smith @*/ 2022637a0070SStefano Zampini PetscErrorCode MatDensePlaceArray(Mat mat,const PetscScalar *array) 2023d3042a70SBarry Smith { 2024d3042a70SBarry Smith PetscFunctionBegin; 2025d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 20265f80ce2aSJacob Faibussowitsch CHKERRQ(PetscUseMethod(mat,"MatDensePlaceArray_C",(Mat,const PetscScalar*),(mat,array))); 20275f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectStateIncrease((PetscObject)mat)); 2028637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 2029637a0070SStefano Zampini mat->offloadmask = PETSC_OFFLOAD_CPU; 2030637a0070SStefano Zampini #endif 2031d3042a70SBarry Smith PetscFunctionReturn(0); 2032d3042a70SBarry Smith } 2033d3042a70SBarry Smith 2034d3042a70SBarry Smith /*@ 2035d3042a70SBarry Smith MatDenseResetArray - Resets the matrix array to that it previously had before the call to MatDensePlaceArray() 2036d3042a70SBarry Smith 2037d3042a70SBarry Smith Not Collective 2038d3042a70SBarry Smith 2039d3042a70SBarry Smith Input Parameters: 2040d3042a70SBarry Smith . mat - the matrix 2041d3042a70SBarry Smith 2042d3042a70SBarry Smith Notes: 2043d3042a70SBarry Smith You can only call this after a call to MatDensePlaceArray() 2044d3042a70SBarry Smith 2045d3042a70SBarry Smith Level: developer 2046d3042a70SBarry Smith 2047d3042a70SBarry Smith .seealso: MatDenseGetArray(), MatDensePlaceArray(), VecPlaceArray(), VecGetArray(), VecRestoreArray(), VecReplaceArray(), VecResetArray() 2048d3042a70SBarry Smith 2049d3042a70SBarry Smith @*/ 2050d3042a70SBarry Smith PetscErrorCode MatDenseResetArray(Mat mat) 2051d3042a70SBarry Smith { 2052d3042a70SBarry Smith PetscFunctionBegin; 2053d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 20545f80ce2aSJacob Faibussowitsch CHKERRQ(PetscUseMethod(mat,"MatDenseResetArray_C",(Mat),(mat))); 20555f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectStateIncrease((PetscObject)mat)); 2056d3042a70SBarry Smith PetscFunctionReturn(0); 2057d3042a70SBarry Smith } 2058d3042a70SBarry Smith 2059d5ea218eSStefano Zampini /*@ 2060d5ea218eSStefano Zampini MatDenseReplaceArray - Allows one to replace the array in a dense matrix with an 2061d5ea218eSStefano Zampini array provided by the user. This is useful to avoid copying an array 2062d5ea218eSStefano Zampini into a matrix 2063d5ea218eSStefano Zampini 2064d5ea218eSStefano Zampini Not Collective 2065d5ea218eSStefano Zampini 2066d5ea218eSStefano Zampini Input Parameters: 2067d5ea218eSStefano Zampini + mat - the matrix 2068d5ea218eSStefano Zampini - array - the array in column major order 2069d5ea218eSStefano Zampini 2070d5ea218eSStefano Zampini Notes: 2071d5ea218eSStefano Zampini The memory passed in MUST be obtained with PetscMalloc() and CANNOT be 2072d5ea218eSStefano Zampini freed by the user. It will be freed when the matrix is destroyed. 2073d5ea218eSStefano Zampini 2074d5ea218eSStefano Zampini Level: developer 2075d5ea218eSStefano Zampini 2076d5ea218eSStefano Zampini .seealso: MatDenseGetArray(), VecReplaceArray() 2077d5ea218eSStefano Zampini @*/ 2078d5ea218eSStefano Zampini PetscErrorCode MatDenseReplaceArray(Mat mat,const PetscScalar *array) 2079d5ea218eSStefano Zampini { 2080d5ea218eSStefano Zampini PetscFunctionBegin; 2081d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 20825f80ce2aSJacob Faibussowitsch CHKERRQ(PetscUseMethod(mat,"MatDenseReplaceArray_C",(Mat,const PetscScalar*),(mat,array))); 20835f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectStateIncrease((PetscObject)mat)); 2084d5ea218eSStefano Zampini #if defined(PETSC_HAVE_CUDA) 2085d5ea218eSStefano Zampini mat->offloadmask = PETSC_OFFLOAD_CPU; 2086d5ea218eSStefano Zampini #endif 2087d5ea218eSStefano Zampini PetscFunctionReturn(0); 2088d5ea218eSStefano Zampini } 2089d5ea218eSStefano Zampini 2090637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 20918965ea79SLois Curfman McInnes /*@C 2092637a0070SStefano Zampini MatDenseCUDAPlaceArray - Allows one to replace the GPU array in a dense matrix with an 2093637a0070SStefano Zampini array provided by the user. This is useful to avoid copying an array 2094637a0070SStefano Zampini into a matrix 2095637a0070SStefano Zampini 2096637a0070SStefano Zampini Not Collective 2097637a0070SStefano Zampini 2098637a0070SStefano Zampini Input Parameters: 2099637a0070SStefano Zampini + mat - the matrix 2100637a0070SStefano Zampini - array - the array in column major order 2101637a0070SStefano Zampini 2102637a0070SStefano Zampini Notes: 2103637a0070SStefano Zampini You can return to the original array with a call to MatDenseCUDAResetArray(). The user is responsible for freeing this array; it will not be 2104637a0070SStefano Zampini freed when the matrix is destroyed. The array must have been allocated with cudaMalloc(). 2105637a0070SStefano Zampini 2106637a0070SStefano Zampini Level: developer 2107637a0070SStefano Zampini 2108637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDAResetArray() 2109637a0070SStefano Zampini @*/ 2110637a0070SStefano Zampini PetscErrorCode MatDenseCUDAPlaceArray(Mat mat,const PetscScalar *array) 2111637a0070SStefano Zampini { 2112637a0070SStefano Zampini PetscFunctionBegin; 2113d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 21145f80ce2aSJacob Faibussowitsch CHKERRQ(PetscUseMethod(mat,"MatDenseCUDAPlaceArray_C",(Mat,const PetscScalar*),(mat,array))); 21155f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectStateIncrease((PetscObject)mat)); 2116637a0070SStefano Zampini mat->offloadmask = PETSC_OFFLOAD_GPU; 2117637a0070SStefano Zampini PetscFunctionReturn(0); 2118637a0070SStefano Zampini } 2119637a0070SStefano Zampini 2120637a0070SStefano Zampini /*@C 2121637a0070SStefano Zampini MatDenseCUDAResetArray - Resets the matrix array to that it previously had before the call to MatDenseCUDAPlaceArray() 2122637a0070SStefano Zampini 2123637a0070SStefano Zampini Not Collective 2124637a0070SStefano Zampini 2125637a0070SStefano Zampini Input Parameters: 2126637a0070SStefano Zampini . mat - the matrix 2127637a0070SStefano Zampini 2128637a0070SStefano Zampini Notes: 2129637a0070SStefano Zampini You can only call this after a call to MatDenseCUDAPlaceArray() 2130637a0070SStefano Zampini 2131637a0070SStefano Zampini Level: developer 2132637a0070SStefano Zampini 2133637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDAPlaceArray() 2134637a0070SStefano Zampini 2135637a0070SStefano Zampini @*/ 2136637a0070SStefano Zampini PetscErrorCode MatDenseCUDAResetArray(Mat mat) 2137637a0070SStefano Zampini { 2138637a0070SStefano Zampini PetscFunctionBegin; 2139d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 21405f80ce2aSJacob Faibussowitsch CHKERRQ(PetscUseMethod(mat,"MatDenseCUDAResetArray_C",(Mat),(mat))); 21415f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectStateIncrease((PetscObject)mat)); 2142637a0070SStefano Zampini PetscFunctionReturn(0); 2143637a0070SStefano Zampini } 2144637a0070SStefano Zampini 2145637a0070SStefano Zampini /*@C 2146d5ea218eSStefano Zampini MatDenseCUDAReplaceArray - Allows one to replace the GPU array in a dense matrix with an 2147d5ea218eSStefano Zampini array provided by the user. This is useful to avoid copying an array 2148d5ea218eSStefano Zampini into a matrix 2149d5ea218eSStefano Zampini 2150d5ea218eSStefano Zampini Not Collective 2151d5ea218eSStefano Zampini 2152d5ea218eSStefano Zampini Input Parameters: 2153d5ea218eSStefano Zampini + mat - the matrix 2154d5ea218eSStefano Zampini - array - the array in column major order 2155d5ea218eSStefano Zampini 2156d5ea218eSStefano Zampini Notes: 2157d5ea218eSStefano Zampini This permanently replaces the GPU array and frees the memory associated with the old GPU array. 2158d5ea218eSStefano Zampini The memory passed in CANNOT be freed by the user. It will be freed 2159d5ea218eSStefano Zampini when the matrix is destroyed. The array should respect the matrix leading dimension. 2160d5ea218eSStefano Zampini 2161d5ea218eSStefano Zampini Level: developer 2162d5ea218eSStefano Zampini 2163d5ea218eSStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDAPlaceArray(), MatDenseCUDAResetArray() 2164d5ea218eSStefano Zampini @*/ 2165d5ea218eSStefano Zampini PetscErrorCode MatDenseCUDAReplaceArray(Mat mat,const PetscScalar *array) 2166d5ea218eSStefano Zampini { 2167d5ea218eSStefano Zampini PetscFunctionBegin; 2168d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 21695f80ce2aSJacob Faibussowitsch CHKERRQ(PetscUseMethod(mat,"MatDenseCUDAReplaceArray_C",(Mat,const PetscScalar*),(mat,array))); 21705f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectStateIncrease((PetscObject)mat)); 2171d5ea218eSStefano Zampini mat->offloadmask = PETSC_OFFLOAD_GPU; 2172d5ea218eSStefano Zampini PetscFunctionReturn(0); 2173d5ea218eSStefano Zampini } 2174d5ea218eSStefano Zampini 2175d5ea218eSStefano Zampini /*@C 2176637a0070SStefano Zampini MatDenseCUDAGetArrayWrite - Provides write access to the CUDA buffer inside a dense matrix. 2177637a0070SStefano Zampini 2178637a0070SStefano Zampini Not Collective 2179637a0070SStefano Zampini 2180637a0070SStefano Zampini Input Parameters: 2181637a0070SStefano Zampini . A - the matrix 2182637a0070SStefano Zampini 2183637a0070SStefano Zampini Output Parameters 2184637a0070SStefano Zampini . array - the GPU array in column major order 2185637a0070SStefano Zampini 2186637a0070SStefano Zampini Notes: 2187637a0070SStefano Zampini The data on the GPU may not be updated due to operations done on the CPU. If you need updated data, use MatDenseCUDAGetArray(). The array must be restored with MatDenseCUDARestoreArrayWrite() when no longer needed. 2188637a0070SStefano Zampini 2189637a0070SStefano Zampini Level: developer 2190637a0070SStefano Zampini 2191637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayRead(), MatDenseCUDARestoreArrayRead() 2192637a0070SStefano Zampini @*/ 2193637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArrayWrite(Mat A, PetscScalar **a) 2194637a0070SStefano Zampini { 2195637a0070SStefano Zampini PetscFunctionBegin; 2196d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 21975f80ce2aSJacob Faibussowitsch CHKERRQ(PetscUseMethod(A,"MatDenseCUDAGetArrayWrite_C",(Mat,PetscScalar**),(A,a))); 21985f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectStateIncrease((PetscObject)A)); 2199637a0070SStefano Zampini PetscFunctionReturn(0); 2200637a0070SStefano Zampini } 2201637a0070SStefano Zampini 2202637a0070SStefano Zampini /*@C 2203637a0070SStefano Zampini MatDenseCUDARestoreArrayWrite - Restore write access to the CUDA buffer inside a dense matrix previously obtained with MatDenseCUDAGetArrayWrite(). 2204637a0070SStefano Zampini 2205637a0070SStefano Zampini Not Collective 2206637a0070SStefano Zampini 2207637a0070SStefano Zampini Input Parameters: 2208637a0070SStefano Zampini + A - the matrix 2209637a0070SStefano Zampini - array - the GPU array in column major order 2210637a0070SStefano Zampini 2211637a0070SStefano Zampini Notes: 2212637a0070SStefano Zampini 2213637a0070SStefano Zampini Level: developer 2214637a0070SStefano Zampini 2215637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead(), MatDenseCUDAGetArrayRead() 2216637a0070SStefano Zampini @*/ 2217637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArrayWrite(Mat A, PetscScalar **a) 2218637a0070SStefano Zampini { 2219637a0070SStefano Zampini PetscFunctionBegin; 2220d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 22215f80ce2aSJacob Faibussowitsch CHKERRQ(PetscUseMethod(A,"MatDenseCUDARestoreArrayWrite_C",(Mat,PetscScalar**),(A,a))); 22225f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectStateIncrease((PetscObject)A)); 2223637a0070SStefano Zampini A->offloadmask = PETSC_OFFLOAD_GPU; 2224637a0070SStefano Zampini PetscFunctionReturn(0); 2225637a0070SStefano Zampini } 2226637a0070SStefano Zampini 2227637a0070SStefano Zampini /*@C 2228637a0070SStefano Zampini MatDenseCUDAGetArrayRead - Provides read-only access to the CUDA buffer inside a dense matrix. The array must be restored with MatDenseCUDARestoreArrayRead() when no longer needed. 2229637a0070SStefano Zampini 2230637a0070SStefano Zampini Not Collective 2231637a0070SStefano Zampini 2232637a0070SStefano Zampini Input Parameters: 2233637a0070SStefano Zampini . A - the matrix 2234637a0070SStefano Zampini 2235637a0070SStefano Zampini Output Parameters 2236637a0070SStefano Zampini . array - the GPU array in column major order 2237637a0070SStefano Zampini 2238637a0070SStefano Zampini Notes: 2239637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). 2240637a0070SStefano Zampini 2241637a0070SStefano Zampini Level: developer 2242637a0070SStefano Zampini 2243637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead() 2244637a0070SStefano Zampini @*/ 2245637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArrayRead(Mat A, const PetscScalar **a) 2246637a0070SStefano Zampini { 2247637a0070SStefano Zampini PetscFunctionBegin; 2248d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 22495f80ce2aSJacob Faibussowitsch CHKERRQ(PetscUseMethod(A,"MatDenseCUDAGetArrayRead_C",(Mat,const PetscScalar**),(A,a))); 2250637a0070SStefano Zampini PetscFunctionReturn(0); 2251637a0070SStefano Zampini } 2252637a0070SStefano Zampini 2253637a0070SStefano Zampini /*@C 2254637a0070SStefano Zampini MatDenseCUDARestoreArrayRead - Restore read-only access to the CUDA buffer inside a dense matrix previously obtained with a call to MatDenseCUDAGetArrayRead(). 2255637a0070SStefano Zampini 2256637a0070SStefano Zampini Not Collective 2257637a0070SStefano Zampini 2258637a0070SStefano Zampini Input Parameters: 2259637a0070SStefano Zampini + A - the matrix 2260637a0070SStefano Zampini - array - the GPU array in column major order 2261637a0070SStefano Zampini 2262637a0070SStefano Zampini Notes: 2263637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). 2264637a0070SStefano Zampini 2265637a0070SStefano Zampini Level: developer 2266637a0070SStefano Zampini 2267637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDAGetArrayRead() 2268637a0070SStefano Zampini @*/ 2269637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArrayRead(Mat A, const PetscScalar **a) 2270637a0070SStefano Zampini { 2271637a0070SStefano Zampini PetscFunctionBegin; 22725f80ce2aSJacob Faibussowitsch CHKERRQ(PetscUseMethod(A,"MatDenseCUDARestoreArrayRead_C",(Mat,const PetscScalar**),(A,a))); 2273637a0070SStefano Zampini PetscFunctionReturn(0); 2274637a0070SStefano Zampini } 2275637a0070SStefano Zampini 2276637a0070SStefano Zampini /*@C 2277637a0070SStefano Zampini MatDenseCUDAGetArray - Provides access to the CUDA buffer inside a dense matrix. The array must be restored with MatDenseCUDARestoreArray() when no longer needed. 2278637a0070SStefano Zampini 2279637a0070SStefano Zampini Not Collective 2280637a0070SStefano Zampini 2281637a0070SStefano Zampini Input Parameters: 2282637a0070SStefano Zampini . A - the matrix 2283637a0070SStefano Zampini 2284637a0070SStefano Zampini Output Parameters 2285637a0070SStefano Zampini . array - the GPU array in column major order 2286637a0070SStefano Zampini 2287637a0070SStefano Zampini Notes: 2288637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). For read-only access, use MatDenseCUDAGetArrayRead(). 2289637a0070SStefano Zampini 2290637a0070SStefano Zampini Level: developer 2291637a0070SStefano Zampini 2292637a0070SStefano Zampini .seealso: MatDenseCUDAGetArrayRead(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead() 2293637a0070SStefano Zampini @*/ 2294637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArray(Mat A, PetscScalar **a) 2295637a0070SStefano Zampini { 2296637a0070SStefano Zampini PetscFunctionBegin; 2297d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 22985f80ce2aSJacob Faibussowitsch CHKERRQ(PetscUseMethod(A,"MatDenseCUDAGetArray_C",(Mat,PetscScalar**),(A,a))); 22995f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectStateIncrease((PetscObject)A)); 2300637a0070SStefano Zampini PetscFunctionReturn(0); 2301637a0070SStefano Zampini } 2302637a0070SStefano Zampini 2303637a0070SStefano Zampini /*@C 2304637a0070SStefano Zampini MatDenseCUDARestoreArray - Restore access to the CUDA buffer inside a dense matrix previously obtained with MatDenseCUDAGetArray(). 2305637a0070SStefano Zampini 2306637a0070SStefano Zampini Not Collective 2307637a0070SStefano Zampini 2308637a0070SStefano Zampini Input Parameters: 2309637a0070SStefano Zampini + A - the matrix 2310637a0070SStefano Zampini - array - the GPU array in column major order 2311637a0070SStefano Zampini 2312637a0070SStefano Zampini Notes: 2313637a0070SStefano Zampini 2314637a0070SStefano Zampini Level: developer 2315637a0070SStefano Zampini 2316637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead(), MatDenseCUDAGetArrayRead() 2317637a0070SStefano Zampini @*/ 2318637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArray(Mat A, PetscScalar **a) 2319637a0070SStefano Zampini { 2320637a0070SStefano Zampini PetscFunctionBegin; 2321d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 23225f80ce2aSJacob Faibussowitsch CHKERRQ(PetscUseMethod(A,"MatDenseCUDARestoreArray_C",(Mat,PetscScalar**),(A,a))); 23235f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectStateIncrease((PetscObject)A)); 2324637a0070SStefano Zampini A->offloadmask = PETSC_OFFLOAD_GPU; 2325637a0070SStefano Zampini PetscFunctionReturn(0); 2326637a0070SStefano Zampini } 2327637a0070SStefano Zampini #endif 2328637a0070SStefano Zampini 2329637a0070SStefano Zampini /*@C 2330637a0070SStefano Zampini MatCreateDense - Creates a matrix in dense format. 23318965ea79SLois Curfman McInnes 2332d083f849SBarry Smith Collective 2333db81eaa0SLois Curfman McInnes 23348965ea79SLois Curfman McInnes Input Parameters: 2335db81eaa0SLois Curfman McInnes + comm - MPI communicator 23368965ea79SLois Curfman McInnes . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2337db81eaa0SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 23388965ea79SLois Curfman McInnes . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 2339db81eaa0SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 23406cfe35ddSJose E. Roman - data - optional location of matrix data. Set data=NULL (PETSC_NULL_SCALAR for Fortran users) for PETSc 2341dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 23428965ea79SLois Curfman McInnes 23438965ea79SLois Curfman McInnes Output Parameter: 2344477f1c0bSLois Curfman McInnes . A - the matrix 23458965ea79SLois Curfman McInnes 2346b259b22eSLois Curfman McInnes Notes: 234739ddd567SLois Curfman McInnes The dense format is fully compatible with standard Fortran 77 234839ddd567SLois Curfman McInnes storage by columns. 2349002bc6daSRichard Tran Mills Note that, although local portions of the matrix are stored in column-major 2350002bc6daSRichard Tran Mills order, the matrix is partitioned across MPI ranks by row. 23518965ea79SLois Curfman McInnes 235218f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 235318f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 23546cfe35ddSJose E. Roman set data=NULL (PETSC_NULL_SCALAR for Fortran users). 235518f449edSLois Curfman McInnes 23568965ea79SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 23578965ea79SLois Curfman McInnes (possibly both). 23588965ea79SLois Curfman McInnes 2359027ccd11SLois Curfman McInnes Level: intermediate 2360027ccd11SLois Curfman McInnes 236139ddd567SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 23628965ea79SLois Curfman McInnes @*/ 236369b1f4b7SBarry Smith PetscErrorCode MatCreateDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 23648965ea79SLois Curfman McInnes { 236513f74950SBarry Smith PetscMPIInt size; 23668965ea79SLois Curfman McInnes 23673a40ed3dSBarry Smith PetscFunctionBegin; 23685f80ce2aSJacob Faibussowitsch CHKERRQ(MatCreate(comm,A)); 23695f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetSizes(*A,m,n,M,N)); 23705f80ce2aSJacob Faibussowitsch CHKERRMPI(MPI_Comm_size(comm,&size)); 2371273d9f13SBarry Smith if (size > 1) { 23728f490ea3SStefano Zampini PetscBool havedata = (PetscBool)!!data; 23738f490ea3SStefano Zampini 23745f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetType(*A,MATMPIDENSE)); 23755f80ce2aSJacob Faibussowitsch CHKERRQ(MatMPIDenseSetPreallocation(*A,data)); 23765f80ce2aSJacob Faibussowitsch CHKERRMPI(MPIU_Allreduce(MPI_IN_PLACE,&havedata,1,MPIU_BOOL,MPI_LOR,comm)); 23778f490ea3SStefano Zampini if (havedata) { /* user provided data array, so no need to assemble */ 23785f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetUpMultiply_MPIDense(*A)); 23796cfe35ddSJose E. Roman (*A)->assembled = PETSC_TRUE; 23806cfe35ddSJose E. Roman } 2381273d9f13SBarry Smith } else { 23825f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetType(*A,MATSEQDENSE)); 23835f80ce2aSJacob Faibussowitsch CHKERRQ(MatSeqDenseSetPreallocation(*A,data)); 23848c469469SLois Curfman McInnes } 23853a40ed3dSBarry Smith PetscFunctionReturn(0); 23868965ea79SLois Curfman McInnes } 23878965ea79SLois Curfman McInnes 2388637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 2389637a0070SStefano Zampini /*@C 2390637a0070SStefano Zampini MatCreateDenseCUDA - Creates a matrix in dense format using CUDA. 2391637a0070SStefano Zampini 2392637a0070SStefano Zampini Collective 2393637a0070SStefano Zampini 2394637a0070SStefano Zampini Input Parameters: 2395637a0070SStefano Zampini + comm - MPI communicator 2396637a0070SStefano Zampini . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2397637a0070SStefano Zampini . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 2398637a0070SStefano Zampini . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 2399637a0070SStefano Zampini . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 2400637a0070SStefano Zampini - data - optional location of GPU matrix data. Set data=NULL for PETSc 2401637a0070SStefano Zampini to control matrix memory allocation. 2402637a0070SStefano Zampini 2403637a0070SStefano Zampini Output Parameter: 2404637a0070SStefano Zampini . A - the matrix 2405637a0070SStefano Zampini 2406637a0070SStefano Zampini Notes: 2407637a0070SStefano Zampini 2408637a0070SStefano Zampini Level: intermediate 2409637a0070SStefano Zampini 2410637a0070SStefano Zampini .seealso: MatCreate(), MatCreateDense() 2411637a0070SStefano Zampini @*/ 2412637a0070SStefano Zampini PetscErrorCode MatCreateDenseCUDA(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 2413637a0070SStefano Zampini { 2414637a0070SStefano Zampini PetscMPIInt size; 2415637a0070SStefano Zampini 2416637a0070SStefano Zampini PetscFunctionBegin; 24175f80ce2aSJacob Faibussowitsch CHKERRQ(MatCreate(comm,A)); 2418637a0070SStefano Zampini PetscValidLogicalCollectiveBool(*A,!!data,6); 24195f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetSizes(*A,m,n,M,N)); 24205f80ce2aSJacob Faibussowitsch CHKERRMPI(MPI_Comm_size(comm,&size)); 2421637a0070SStefano Zampini if (size > 1) { 24225f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetType(*A,MATMPIDENSECUDA)); 24235f80ce2aSJacob Faibussowitsch CHKERRQ(MatMPIDenseCUDASetPreallocation(*A,data)); 2424637a0070SStefano Zampini if (data) { /* user provided data array, so no need to assemble */ 24255f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetUpMultiply_MPIDense(*A)); 2426637a0070SStefano Zampini (*A)->assembled = PETSC_TRUE; 2427637a0070SStefano Zampini } 2428637a0070SStefano Zampini } else { 24295f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetType(*A,MATSEQDENSECUDA)); 24305f80ce2aSJacob Faibussowitsch CHKERRQ(MatSeqDenseCUDASetPreallocation(*A,data)); 2431637a0070SStefano Zampini } 2432637a0070SStefano Zampini PetscFunctionReturn(0); 2433637a0070SStefano Zampini } 2434637a0070SStefano Zampini #endif 2435637a0070SStefano Zampini 24366849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat) 24378965ea79SLois Curfman McInnes { 24388965ea79SLois Curfman McInnes Mat mat; 24393501a2bdSLois Curfman McInnes Mat_MPIDense *a,*oldmat = (Mat_MPIDense*)A->data; 24408965ea79SLois Curfman McInnes 24413a40ed3dSBarry Smith PetscFunctionBegin; 2442f4259b30SLisandro Dalcin *newmat = NULL; 24435f80ce2aSJacob Faibussowitsch CHKERRQ(MatCreate(PetscObjectComm((PetscObject)A),&mat)); 24445f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetSizes(mat,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N)); 24455f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetType(mat,((PetscObject)A)->type_name)); 2446834f8fabSBarry Smith a = (Mat_MPIDense*)mat->data; 24475aa7edbeSHong Zhang 2448d5f3da31SBarry Smith mat->factortype = A->factortype; 2449c456f294SBarry Smith mat->assembled = PETSC_TRUE; 2450273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 24518965ea79SLois Curfman McInnes 2452e0fa3b82SLois Curfman McInnes mat->insertmode = NOT_SET_VALUES; 24533782ba37SSatish Balay a->donotstash = oldmat->donotstash; 2454e04c1aa4SHong Zhang 24555f80ce2aSJacob Faibussowitsch CHKERRQ(PetscLayoutReference(A->rmap,&mat->rmap)); 24565f80ce2aSJacob Faibussowitsch CHKERRQ(PetscLayoutReference(A->cmap,&mat->cmap)); 24578965ea79SLois Curfman McInnes 24585f80ce2aSJacob Faibussowitsch CHKERRQ(MatDuplicate(oldmat->A,cpvalues,&a->A)); 24595f80ce2aSJacob Faibussowitsch CHKERRQ(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A)); 24605f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetUpMultiply_MPIDense(mat)); 246101b82886SBarry Smith 24628965ea79SLois Curfman McInnes *newmat = mat; 24633a40ed3dSBarry Smith PetscFunctionReturn(0); 24648965ea79SLois Curfman McInnes } 24658965ea79SLois Curfman McInnes 2466eb91f321SVaclav Hapla PetscErrorCode MatLoad_MPIDense(Mat newMat, PetscViewer viewer) 2467eb91f321SVaclav Hapla { 246887d5ce66SSatish Balay PetscBool isbinary; 246987d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 247087d5ce66SSatish Balay PetscBool ishdf5; 247187d5ce66SSatish Balay #endif 2472eb91f321SVaclav Hapla 2473eb91f321SVaclav Hapla PetscFunctionBegin; 2474eb91f321SVaclav Hapla PetscValidHeaderSpecific(newMat,MAT_CLASSID,1); 2475eb91f321SVaclav Hapla PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2); 2476eb91f321SVaclav Hapla /* force binary viewer to load .info file if it has not yet done so */ 24775f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerSetUp(viewer)); 24785f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary)); 247987d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 24805f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERHDF5, &ishdf5)); 248187d5ce66SSatish Balay #endif 2482eb91f321SVaclav Hapla if (isbinary) { 24835f80ce2aSJacob Faibussowitsch CHKERRQ(MatLoad_Dense_Binary(newMat,viewer)); 2484eb91f321SVaclav Hapla #if defined(PETSC_HAVE_HDF5) 248587d5ce66SSatish Balay } else if (ishdf5) { 24865f80ce2aSJacob Faibussowitsch CHKERRQ(MatLoad_Dense_HDF5(newMat,viewer)); 2487eb91f321SVaclav Hapla #endif 248898921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)newMat),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)newMat)->type_name); 2489eb91f321SVaclav Hapla PetscFunctionReturn(0); 2490eb91f321SVaclav Hapla } 2491eb91f321SVaclav Hapla 24926718818eSStefano Zampini static PetscErrorCode MatEqual_MPIDense(Mat A,Mat B,PetscBool *flag) 24936e4ee0c6SHong Zhang { 24946e4ee0c6SHong Zhang Mat_MPIDense *matB = (Mat_MPIDense*)B->data,*matA = (Mat_MPIDense*)A->data; 24956e4ee0c6SHong Zhang Mat a,b; 2496ace3abfcSBarry Smith PetscBool flg; 249790ace30eSBarry Smith 24986e4ee0c6SHong Zhang PetscFunctionBegin; 24996e4ee0c6SHong Zhang a = matA->A; 25006e4ee0c6SHong Zhang b = matB->A; 25015f80ce2aSJacob Faibussowitsch CHKERRQ(MatEqual(a,b,&flg)); 25025f80ce2aSJacob Faibussowitsch CHKERRMPI(MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A))); 25036e4ee0c6SHong Zhang PetscFunctionReturn(0); 25046e4ee0c6SHong Zhang } 250590ace30eSBarry Smith 25066718818eSStefano Zampini PetscErrorCode MatDestroy_MatTransMatMult_MPIDense_MPIDense(void *data) 2507baa3c1c6SHong Zhang { 25086718818eSStefano Zampini Mat_TransMatMultDense *atb = (Mat_TransMatMultDense *)data; 2509baa3c1c6SHong Zhang 2510baa3c1c6SHong Zhang PetscFunctionBegin; 25115f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFree2(atb->sendbuf,atb->recvcounts)); 25125f80ce2aSJacob Faibussowitsch CHKERRQ(MatDestroy(&atb->atb)); 25135f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFree(atb)); 2514baa3c1c6SHong Zhang PetscFunctionReturn(0); 2515baa3c1c6SHong Zhang } 2516baa3c1c6SHong Zhang 25176718818eSStefano Zampini PetscErrorCode MatDestroy_MatMatTransMult_MPIDense_MPIDense(void *data) 2518cc48ffa7SToby Isaac { 25196718818eSStefano Zampini Mat_MatTransMultDense *abt = (Mat_MatTransMultDense *)data; 2520cc48ffa7SToby Isaac 2521cc48ffa7SToby Isaac PetscFunctionBegin; 25225f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFree2(abt->buf[0],abt->buf[1])); 25235f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFree2(abt->recvcounts,abt->recvdispls)); 25245f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFree(abt)); 2525cc48ffa7SToby Isaac PetscFunctionReturn(0); 2526cc48ffa7SToby Isaac } 2527cc48ffa7SToby Isaac 25286718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 2529cb20be35SHong Zhang { 2530baa3c1c6SHong Zhang Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 25316718818eSStefano Zampini Mat_TransMatMultDense *atb; 2532cb20be35SHong Zhang MPI_Comm comm; 25336718818eSStefano Zampini PetscMPIInt size,*recvcounts; 25346718818eSStefano Zampini PetscScalar *carray,*sendbuf; 2535637a0070SStefano Zampini const PetscScalar *atbarray; 2536a1f9a5e6SStefano Zampini PetscInt i,cN=C->cmap->N,proc,k,j,lda; 2537e68c0b26SHong Zhang const PetscInt *ranges; 2538cb20be35SHong Zhang 2539cb20be35SHong Zhang PetscFunctionBegin; 25406718818eSStefano Zampini MatCheckProduct(C,3); 25415f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 25426718818eSStefano Zampini atb = (Mat_TransMatMultDense *)C->product->data; 25436718818eSStefano Zampini recvcounts = atb->recvcounts; 25446718818eSStefano Zampini sendbuf = atb->sendbuf; 25456718818eSStefano Zampini 25465f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectGetComm((PetscObject)A,&comm)); 25475f80ce2aSJacob Faibussowitsch CHKERRMPI(MPI_Comm_size(comm,&size)); 2548e68c0b26SHong Zhang 2549c5ef1628SHong Zhang /* compute atbarray = aseq^T * bseq */ 25505f80ce2aSJacob Faibussowitsch CHKERRQ(MatTransposeMatMult(a->A,b->A,atb->atb ? MAT_REUSE_MATRIX : MAT_INITIAL_MATRIX,PETSC_DEFAULT,&atb->atb)); 2551cb20be35SHong Zhang 25525f80ce2aSJacob Faibussowitsch CHKERRQ(MatGetOwnershipRanges(C,&ranges)); 2553cb20be35SHong Zhang 2554660d5466SHong Zhang /* arrange atbarray into sendbuf */ 25555f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseGetArrayRead(atb->atb,&atbarray)); 25565f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseGetLDA(atb->atb,&lda)); 2557637a0070SStefano Zampini for (proc=0, k=0; proc<size; proc++) { 2558baa3c1c6SHong Zhang for (j=0; j<cN; j++) { 2559a1f9a5e6SStefano Zampini for (i=ranges[proc]; i<ranges[proc+1]; i++) sendbuf[k++] = atbarray[i+j*lda]; 2560cb20be35SHong Zhang } 2561cb20be35SHong Zhang } 25625f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseRestoreArrayRead(atb->atb,&atbarray)); 2563637a0070SStefano Zampini 2564c5ef1628SHong Zhang /* sum all atbarray to local values of C */ 25655f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseGetArrayWrite(c->A,&carray)); 25665f80ce2aSJacob Faibussowitsch CHKERRMPI(MPI_Reduce_scatter(sendbuf,carray,recvcounts,MPIU_SCALAR,MPIU_SUM,comm)); 25675f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseRestoreArrayWrite(c->A,&carray)); 25685f80ce2aSJacob Faibussowitsch CHKERRQ(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY)); 25695f80ce2aSJacob Faibussowitsch CHKERRQ(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY)); 2570cb20be35SHong Zhang PetscFunctionReturn(0); 2571cb20be35SHong Zhang } 2572cb20be35SHong Zhang 25736718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat C) 2574cb20be35SHong Zhang { 2575cb20be35SHong Zhang MPI_Comm comm; 2576baa3c1c6SHong Zhang PetscMPIInt size; 2577660d5466SHong Zhang PetscInt cm=A->cmap->n,cM,cN=B->cmap->N; 2578baa3c1c6SHong Zhang Mat_TransMatMultDense *atb; 25796718818eSStefano Zampini PetscBool cisdense; 25800acaeb71SStefano Zampini PetscInt i; 25810acaeb71SStefano Zampini const PetscInt *ranges; 2582cb20be35SHong Zhang 2583cb20be35SHong Zhang PetscFunctionBegin; 25846718818eSStefano Zampini MatCheckProduct(C,3); 25855f80ce2aSJacob Faibussowitsch PetscCheck(!C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty"); 25865f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectGetComm((PetscObject)A,&comm)); 2587cb20be35SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) { 258898921bdaSJacob Faibussowitsch SETERRQ(comm,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != B (%" PetscInt_FMT ",%" PetscInt_FMT ")",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 2589cb20be35SHong Zhang } 2590cb20be35SHong Zhang 25914222ddf1SHong Zhang /* create matrix product C */ 25925f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetSizes(C,cm,B->cmap->n,A->cmap->N,B->cmap->N)); 25935f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectTypeCompareAny((PetscObject)C,&cisdense,MATMPIDENSE,MATMPIDENSECUDA,"")); 25946718818eSStefano Zampini if (!cisdense) { 25955f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetType(C,((PetscObject)A)->type_name)); 25966718818eSStefano Zampini } 25975f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetUp(C)); 2598baa3c1c6SHong Zhang 25994222ddf1SHong Zhang /* create data structure for reuse C */ 26005f80ce2aSJacob Faibussowitsch CHKERRMPI(MPI_Comm_size(comm,&size)); 26015f80ce2aSJacob Faibussowitsch CHKERRQ(PetscNew(&atb)); 26024222ddf1SHong Zhang cM = C->rmap->N; 26035f80ce2aSJacob Faibussowitsch CHKERRQ(PetscMalloc2(cM*cN,&atb->sendbuf,size,&atb->recvcounts)); 26045f80ce2aSJacob Faibussowitsch CHKERRQ(MatGetOwnershipRanges(C,&ranges)); 26050acaeb71SStefano Zampini for (i=0; i<size; i++) atb->recvcounts[i] = (ranges[i+1] - ranges[i])*cN; 2606baa3c1c6SHong Zhang 26076718818eSStefano Zampini C->product->data = atb; 26086718818eSStefano Zampini C->product->destroy = MatDestroy_MatTransMatMult_MPIDense_MPIDense; 2609cb20be35SHong Zhang PetscFunctionReturn(0); 2610cb20be35SHong Zhang } 2611cb20be35SHong Zhang 26124222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat A, Mat B, PetscReal fill, Mat C) 2613cb20be35SHong Zhang { 2614cc48ffa7SToby Isaac MPI_Comm comm; 2615cc48ffa7SToby Isaac PetscMPIInt i, size; 2616cc48ffa7SToby Isaac PetscInt maxRows, bufsiz; 2617cc48ffa7SToby Isaac PetscMPIInt tag; 26184222ddf1SHong Zhang PetscInt alg; 2619cc48ffa7SToby Isaac Mat_MatTransMultDense *abt; 26204222ddf1SHong Zhang Mat_Product *product = C->product; 26214222ddf1SHong Zhang PetscBool flg; 2622cc48ffa7SToby Isaac 2623cc48ffa7SToby Isaac PetscFunctionBegin; 26246718818eSStefano Zampini MatCheckProduct(C,4); 26255f80ce2aSJacob Faibussowitsch PetscCheck(!C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty"); 26264222ddf1SHong Zhang /* check local size of A and B */ 26275f80ce2aSJacob Faibussowitsch PetscCheck(A->cmap->n == B->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local column dimensions are incompatible, A (%" PetscInt_FMT ") != B (%" PetscInt_FMT ")",A->cmap->n,B->cmap->n); 2628cc48ffa7SToby Isaac 26295f80ce2aSJacob Faibussowitsch CHKERRQ(PetscStrcmp(product->alg,"allgatherv",&flg)); 2630637a0070SStefano Zampini alg = flg ? 0 : 1; 2631cc48ffa7SToby Isaac 26324222ddf1SHong Zhang /* setup matrix product C */ 26335f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetSizes(C,A->rmap->n,B->rmap->n,A->rmap->N,B->rmap->N)); 26345f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetType(C,MATMPIDENSE)); 26355f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetUp(C)); 26365f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectGetNewTag((PetscObject)C,&tag)); 26374222ddf1SHong Zhang 26384222ddf1SHong Zhang /* create data structure for reuse C */ 26395f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectGetComm((PetscObject)C,&comm)); 26405f80ce2aSJacob Faibussowitsch CHKERRMPI(MPI_Comm_size(comm,&size)); 26415f80ce2aSJacob Faibussowitsch CHKERRQ(PetscNew(&abt)); 2642cc48ffa7SToby Isaac abt->tag = tag; 2643faa55883SToby Isaac abt->alg = alg; 2644faa55883SToby Isaac switch (alg) { 26454222ddf1SHong Zhang case 1: /* alg: "cyclic" */ 2646cc48ffa7SToby Isaac for (maxRows = 0, i = 0; i < size; i++) maxRows = PetscMax(maxRows, (B->rmap->range[i + 1] - B->rmap->range[i])); 2647cc48ffa7SToby Isaac bufsiz = A->cmap->N * maxRows; 26485f80ce2aSJacob Faibussowitsch CHKERRQ(PetscMalloc2(bufsiz,&(abt->buf[0]),bufsiz,&(abt->buf[1]))); 2649faa55883SToby Isaac break; 26504222ddf1SHong Zhang default: /* alg: "allgatherv" */ 26515f80ce2aSJacob Faibussowitsch CHKERRQ(PetscMalloc2(B->rmap->n * B->cmap->N, &(abt->buf[0]), B->rmap->N * B->cmap->N, &(abt->buf[1]))); 26525f80ce2aSJacob Faibussowitsch CHKERRQ(PetscMalloc2(size,&(abt->recvcounts),size+1,&(abt->recvdispls))); 2653faa55883SToby Isaac for (i = 0; i <= size; i++) abt->recvdispls[i] = B->rmap->range[i] * A->cmap->N; 2654faa55883SToby Isaac for (i = 0; i < size; i++) abt->recvcounts[i] = abt->recvdispls[i + 1] - abt->recvdispls[i]; 2655faa55883SToby Isaac break; 2656faa55883SToby Isaac } 2657cc48ffa7SToby Isaac 26586718818eSStefano Zampini C->product->data = abt; 26596718818eSStefano Zampini C->product->destroy = MatDestroy_MatMatTransMult_MPIDense_MPIDense; 26604222ddf1SHong Zhang C->ops->mattransposemultnumeric = MatMatTransposeMultNumeric_MPIDense_MPIDense; 2661cc48ffa7SToby Isaac PetscFunctionReturn(0); 2662cc48ffa7SToby Isaac } 2663cc48ffa7SToby Isaac 2664faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(Mat A, Mat B, Mat C) 2665cc48ffa7SToby Isaac { 2666cc48ffa7SToby Isaac Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 26676718818eSStefano Zampini Mat_MatTransMultDense *abt; 2668cc48ffa7SToby Isaac MPI_Comm comm; 2669cc48ffa7SToby Isaac PetscMPIInt rank,size, sendsiz, recvsiz, sendto, recvfrom, recvisfrom; 2670f4259b30SLisandro Dalcin PetscScalar *sendbuf, *recvbuf=NULL, *cv; 2671cc48ffa7SToby Isaac PetscInt i,cK=A->cmap->N,k,j,bn; 2672cc48ffa7SToby Isaac PetscScalar _DOne=1.0,_DZero=0.0; 2673637a0070SStefano Zampini const PetscScalar *av,*bv; 267423fff9afSBarry Smith PetscBLASInt cm, cn, ck, alda, blda = 0, clda; 2675cc48ffa7SToby Isaac MPI_Request reqs[2]; 2676cc48ffa7SToby Isaac const PetscInt *ranges; 2677cc48ffa7SToby Isaac 2678cc48ffa7SToby Isaac PetscFunctionBegin; 26796718818eSStefano Zampini MatCheckProduct(C,3); 26805f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 26816718818eSStefano Zampini abt = (Mat_MatTransMultDense*)C->product->data; 26825f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectGetComm((PetscObject)C,&comm)); 26835f80ce2aSJacob Faibussowitsch CHKERRMPI(MPI_Comm_rank(comm,&rank)); 26845f80ce2aSJacob Faibussowitsch CHKERRMPI(MPI_Comm_size(comm,&size)); 26855f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseGetArrayRead(a->A,&av)); 26865f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseGetArrayRead(b->A,&bv)); 26875f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseGetArrayWrite(c->A,&cv)); 26885f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseGetLDA(a->A,&i)); 26895f80ce2aSJacob Faibussowitsch CHKERRQ(PetscBLASIntCast(i,&alda)); 26905f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseGetLDA(b->A,&i)); 26915f80ce2aSJacob Faibussowitsch CHKERRQ(PetscBLASIntCast(i,&blda)); 26925f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseGetLDA(c->A,&i)); 26935f80ce2aSJacob Faibussowitsch CHKERRQ(PetscBLASIntCast(i,&clda)); 26945f80ce2aSJacob Faibussowitsch CHKERRQ(MatGetOwnershipRanges(B,&ranges)); 2695cc48ffa7SToby Isaac bn = B->rmap->n; 2696637a0070SStefano Zampini if (blda == bn) { 2697637a0070SStefano Zampini sendbuf = (PetscScalar*)bv; 2698cc48ffa7SToby Isaac } else { 2699cc48ffa7SToby Isaac sendbuf = abt->buf[0]; 2700cc48ffa7SToby Isaac for (k = 0, i = 0; i < cK; i++) { 2701cc48ffa7SToby Isaac for (j = 0; j < bn; j++, k++) { 2702637a0070SStefano Zampini sendbuf[k] = bv[i * blda + j]; 2703cc48ffa7SToby Isaac } 2704cc48ffa7SToby Isaac } 2705cc48ffa7SToby Isaac } 2706cc48ffa7SToby Isaac if (size > 1) { 2707cc48ffa7SToby Isaac sendto = (rank + size - 1) % size; 2708cc48ffa7SToby Isaac recvfrom = (rank + size + 1) % size; 2709cc48ffa7SToby Isaac } else { 2710cc48ffa7SToby Isaac sendto = recvfrom = 0; 2711cc48ffa7SToby Isaac } 27125f80ce2aSJacob Faibussowitsch CHKERRQ(PetscBLASIntCast(cK,&ck)); 27135f80ce2aSJacob Faibussowitsch CHKERRQ(PetscBLASIntCast(c->A->rmap->n,&cm)); 2714cc48ffa7SToby Isaac recvisfrom = rank; 2715cc48ffa7SToby Isaac for (i = 0; i < size; i++) { 2716cc48ffa7SToby Isaac /* we have finished receiving in sending, bufs can be read/modified */ 2717cc48ffa7SToby Isaac PetscInt nextrecvisfrom = (recvisfrom + 1) % size; /* which process the next recvbuf will originate on */ 2718cc48ffa7SToby Isaac PetscInt nextbn = ranges[nextrecvisfrom + 1] - ranges[nextrecvisfrom]; 2719cc48ffa7SToby Isaac 2720cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2721cc48ffa7SToby Isaac /* start the cyclic sends from sendbuf, to recvbuf (which will switch to sendbuf) */ 2722cc48ffa7SToby Isaac sendsiz = cK * bn; 2723cc48ffa7SToby Isaac recvsiz = cK * nextbn; 2724cc48ffa7SToby Isaac recvbuf = (i & 1) ? abt->buf[0] : abt->buf[1]; 27255f80ce2aSJacob Faibussowitsch CHKERRMPI(MPI_Isend(sendbuf, sendsiz, MPIU_SCALAR, sendto, abt->tag, comm, &reqs[0])); 27265f80ce2aSJacob Faibussowitsch CHKERRMPI(MPI_Irecv(recvbuf, recvsiz, MPIU_SCALAR, recvfrom, abt->tag, comm, &reqs[1])); 2727cc48ffa7SToby Isaac } 2728cc48ffa7SToby Isaac 2729cc48ffa7SToby Isaac /* local aseq * sendbuf^T */ 27305f80ce2aSJacob Faibussowitsch CHKERRQ(PetscBLASIntCast(ranges[recvisfrom + 1] - ranges[recvisfrom], &cn)); 273150ce3c9cSStefano Zampini if (cm && cn && ck) PetscStackCallBLAS("BLASgemm",BLASgemm_("N","T",&cm,&cn,&ck,&_DOne,av,&alda,sendbuf,&cn,&_DZero,cv + clda * ranges[recvisfrom],&clda)); 2732cc48ffa7SToby Isaac 2733cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2734cc48ffa7SToby Isaac /* wait for the sends and receives to complete, swap sendbuf and recvbuf */ 27355f80ce2aSJacob Faibussowitsch CHKERRMPI(MPI_Waitall(2, reqs, MPI_STATUSES_IGNORE)); 2736cc48ffa7SToby Isaac } 2737cc48ffa7SToby Isaac bn = nextbn; 2738cc48ffa7SToby Isaac recvisfrom = nextrecvisfrom; 2739cc48ffa7SToby Isaac sendbuf = recvbuf; 2740cc48ffa7SToby Isaac } 27415f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseRestoreArrayRead(a->A,&av)); 27425f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseRestoreArrayRead(b->A,&bv)); 27435f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseRestoreArrayWrite(c->A,&cv)); 27445f80ce2aSJacob Faibussowitsch CHKERRQ(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY)); 27455f80ce2aSJacob Faibussowitsch CHKERRQ(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY)); 2746cc48ffa7SToby Isaac PetscFunctionReturn(0); 2747cc48ffa7SToby Isaac } 2748cc48ffa7SToby Isaac 2749faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(Mat A, Mat B, Mat C) 2750faa55883SToby Isaac { 2751faa55883SToby Isaac Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 27526718818eSStefano Zampini Mat_MatTransMultDense *abt; 2753faa55883SToby Isaac MPI_Comm comm; 2754637a0070SStefano Zampini PetscMPIInt size; 2755637a0070SStefano Zampini PetscScalar *cv, *sendbuf, *recvbuf; 2756637a0070SStefano Zampini const PetscScalar *av,*bv; 2757637a0070SStefano Zampini PetscInt blda,i,cK=A->cmap->N,k,j,bn; 2758faa55883SToby Isaac PetscScalar _DOne=1.0,_DZero=0.0; 2759637a0070SStefano Zampini PetscBLASInt cm, cn, ck, alda, clda; 2760faa55883SToby Isaac 2761faa55883SToby Isaac PetscFunctionBegin; 27626718818eSStefano Zampini MatCheckProduct(C,3); 27635f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 27646718818eSStefano Zampini abt = (Mat_MatTransMultDense*)C->product->data; 27655f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectGetComm((PetscObject)A,&comm)); 27665f80ce2aSJacob Faibussowitsch CHKERRMPI(MPI_Comm_size(comm,&size)); 27675f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseGetArrayRead(a->A,&av)); 27685f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseGetArrayRead(b->A,&bv)); 27695f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseGetArrayWrite(c->A,&cv)); 27705f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseGetLDA(a->A,&i)); 27715f80ce2aSJacob Faibussowitsch CHKERRQ(PetscBLASIntCast(i,&alda)); 27725f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseGetLDA(b->A,&blda)); 27735f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseGetLDA(c->A,&i)); 27745f80ce2aSJacob Faibussowitsch CHKERRQ(PetscBLASIntCast(i,&clda)); 2775faa55883SToby Isaac /* copy transpose of B into buf[0] */ 2776faa55883SToby Isaac bn = B->rmap->n; 2777faa55883SToby Isaac sendbuf = abt->buf[0]; 2778faa55883SToby Isaac recvbuf = abt->buf[1]; 2779faa55883SToby Isaac for (k = 0, j = 0; j < bn; j++) { 2780faa55883SToby Isaac for (i = 0; i < cK; i++, k++) { 2781637a0070SStefano Zampini sendbuf[k] = bv[i * blda + j]; 2782faa55883SToby Isaac } 2783faa55883SToby Isaac } 27845f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseRestoreArrayRead(b->A,&bv)); 27855f80ce2aSJacob Faibussowitsch CHKERRMPI(MPI_Allgatherv(sendbuf, bn * cK, MPIU_SCALAR, recvbuf, abt->recvcounts, abt->recvdispls, MPIU_SCALAR, comm)); 27865f80ce2aSJacob Faibussowitsch CHKERRQ(PetscBLASIntCast(cK,&ck)); 27875f80ce2aSJacob Faibussowitsch CHKERRQ(PetscBLASIntCast(c->A->rmap->n,&cm)); 27885f80ce2aSJacob Faibussowitsch CHKERRQ(PetscBLASIntCast(c->A->cmap->n,&cn)); 278950ce3c9cSStefano Zampini if (cm && cn && ck) PetscStackCallBLAS("BLASgemm",BLASgemm_("N","N",&cm,&cn,&ck,&_DOne,av,&alda,recvbuf,&ck,&_DZero,cv,&clda)); 27905f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseRestoreArrayRead(a->A,&av)); 27915f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseRestoreArrayRead(b->A,&bv)); 27925f80ce2aSJacob Faibussowitsch CHKERRQ(MatDenseRestoreArrayWrite(c->A,&cv)); 27935f80ce2aSJacob Faibussowitsch CHKERRQ(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY)); 27945f80ce2aSJacob Faibussowitsch CHKERRQ(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY)); 2795faa55883SToby Isaac PetscFunctionReturn(0); 2796faa55883SToby Isaac } 2797faa55883SToby Isaac 2798faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat A, Mat B, Mat C) 2799faa55883SToby Isaac { 28006718818eSStefano Zampini Mat_MatTransMultDense *abt; 2801faa55883SToby Isaac 2802faa55883SToby Isaac PetscFunctionBegin; 28036718818eSStefano Zampini MatCheckProduct(C,3); 28045f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 28056718818eSStefano Zampini abt = (Mat_MatTransMultDense*)C->product->data; 2806faa55883SToby Isaac switch (abt->alg) { 2807faa55883SToby Isaac case 1: 28085f80ce2aSJacob Faibussowitsch CHKERRQ(MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(A, B, C)); 2809faa55883SToby Isaac break; 2810faa55883SToby Isaac default: 28115f80ce2aSJacob Faibussowitsch CHKERRQ(MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(A, B, C)); 2812faa55883SToby Isaac break; 2813faa55883SToby Isaac } 2814faa55883SToby Isaac PetscFunctionReturn(0); 2815faa55883SToby Isaac } 2816faa55883SToby Isaac 28176718818eSStefano Zampini PetscErrorCode MatDestroy_MatMatMult_MPIDense_MPIDense(void *data) 2818320f2790SHong Zhang { 28196718818eSStefano Zampini Mat_MatMultDense *ab = (Mat_MatMultDense*)data; 2820320f2790SHong Zhang 2821320f2790SHong Zhang PetscFunctionBegin; 28225f80ce2aSJacob Faibussowitsch CHKERRQ(MatDestroy(&ab->Ce)); 28235f80ce2aSJacob Faibussowitsch CHKERRQ(MatDestroy(&ab->Ae)); 28245f80ce2aSJacob Faibussowitsch CHKERRQ(MatDestroy(&ab->Be)); 28255f80ce2aSJacob Faibussowitsch CHKERRQ(PetscFree(ab)); 2826320f2790SHong Zhang PetscFunctionReturn(0); 2827320f2790SHong Zhang } 2828320f2790SHong Zhang 28295242a7b1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 2830320f2790SHong Zhang PetscErrorCode MatMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 2831320f2790SHong Zhang { 28326718818eSStefano Zampini Mat_MatMultDense *ab; 2833320f2790SHong Zhang 2834320f2790SHong Zhang PetscFunctionBegin; 28356718818eSStefano Zampini MatCheckProduct(C,3); 28365f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Missing product data"); 28376718818eSStefano Zampini ab = (Mat_MatMultDense*)C->product->data; 28385f80ce2aSJacob Faibussowitsch CHKERRQ(MatConvert_MPIDense_Elemental(A,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Ae)); 28395f80ce2aSJacob Faibussowitsch CHKERRQ(MatConvert_MPIDense_Elemental(B,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Be)); 28405f80ce2aSJacob Faibussowitsch CHKERRQ(MatMatMultNumeric_Elemental(ab->Ae,ab->Be,ab->Ce)); 28415f80ce2aSJacob Faibussowitsch CHKERRQ(MatConvert(ab->Ce,MATMPIDENSE,MAT_REUSE_MATRIX,&C)); 2842320f2790SHong Zhang PetscFunctionReturn(0); 2843320f2790SHong Zhang } 2844320f2790SHong Zhang 28456718818eSStefano Zampini static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat C) 2846320f2790SHong Zhang { 2847320f2790SHong Zhang Mat Ae,Be,Ce; 2848320f2790SHong Zhang Mat_MatMultDense *ab; 2849320f2790SHong Zhang 2850320f2790SHong Zhang PetscFunctionBegin; 28516718818eSStefano Zampini MatCheckProduct(C,4); 28525f80ce2aSJacob Faibussowitsch PetscCheck(!C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty"); 28534222ddf1SHong Zhang /* check local size of A and B */ 2854320f2790SHong Zhang if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend) { 285598921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != B (%" PetscInt_FMT ",%" PetscInt_FMT ")",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 2856320f2790SHong Zhang } 2857320f2790SHong Zhang 28584222ddf1SHong Zhang /* create elemental matrices Ae and Be */ 28595f80ce2aSJacob Faibussowitsch CHKERRQ(MatCreate(PetscObjectComm((PetscObject)A), &Ae)); 28605f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetSizes(Ae,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N)); 28615f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetType(Ae,MATELEMENTAL)); 28625f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetUp(Ae)); 28635f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetOption(Ae,MAT_ROW_ORIENTED,PETSC_FALSE)); 2864320f2790SHong Zhang 28655f80ce2aSJacob Faibussowitsch CHKERRQ(MatCreate(PetscObjectComm((PetscObject)B), &Be)); 28665f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetSizes(Be,PETSC_DECIDE,PETSC_DECIDE,B->rmap->N,B->cmap->N)); 28675f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetType(Be,MATELEMENTAL)); 28685f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetUp(Be)); 28695f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetOption(Be,MAT_ROW_ORIENTED,PETSC_FALSE)); 2870320f2790SHong Zhang 28714222ddf1SHong Zhang /* compute symbolic Ce = Ae*Be */ 28725f80ce2aSJacob Faibussowitsch CHKERRQ(MatCreate(PetscObjectComm((PetscObject)C),&Ce)); 28735f80ce2aSJacob Faibussowitsch CHKERRQ(MatMatMultSymbolic_Elemental(Ae,Be,fill,Ce)); 28744222ddf1SHong Zhang 28754222ddf1SHong Zhang /* setup C */ 28765f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetSizes(C,A->rmap->n,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE)); 28775f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetType(C,MATDENSE)); 28785f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetUp(C)); 2879320f2790SHong Zhang 2880320f2790SHong Zhang /* create data structure for reuse Cdense */ 28815f80ce2aSJacob Faibussowitsch CHKERRQ(PetscNew(&ab)); 2882320f2790SHong Zhang ab->Ae = Ae; 2883320f2790SHong Zhang ab->Be = Be; 2884320f2790SHong Zhang ab->Ce = Ce; 28856718818eSStefano Zampini 28866718818eSStefano Zampini C->product->data = ab; 28876718818eSStefano Zampini C->product->destroy = MatDestroy_MatMatMult_MPIDense_MPIDense; 28884222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIDense; 2889320f2790SHong Zhang PetscFunctionReturn(0); 2890320f2790SHong Zhang } 28914222ddf1SHong Zhang #endif 28924222ddf1SHong Zhang /* ----------------------------------------------- */ 28934222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 28944222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_AB(Mat C) 2895320f2790SHong Zhang { 2896320f2790SHong Zhang PetscFunctionBegin; 28974222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIDense; 28984222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 2899320f2790SHong Zhang PetscFunctionReturn(0); 2900320f2790SHong Zhang } 29015242a7b1SHong Zhang #endif 290286aefd0dSHong Zhang 29034222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_AtB(Mat C) 29044222ddf1SHong Zhang { 29054222ddf1SHong Zhang Mat_Product *product = C->product; 29064222ddf1SHong Zhang Mat A = product->A,B=product->B; 29074222ddf1SHong Zhang 29084222ddf1SHong Zhang PetscFunctionBegin; 29094222ddf1SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) 291098921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 29116718818eSStefano Zampini C->ops->transposematmultsymbolic = MatTransposeMatMultSymbolic_MPIDense_MPIDense; 29126718818eSStefano Zampini C->ops->productsymbolic = MatProductSymbolic_AtB; 29134222ddf1SHong Zhang PetscFunctionReturn(0); 29144222ddf1SHong Zhang } 29154222ddf1SHong Zhang 29164222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_ABt(Mat C) 29174222ddf1SHong Zhang { 29184222ddf1SHong Zhang PetscErrorCode ierr; 29194222ddf1SHong Zhang Mat_Product *product = C->product; 29204222ddf1SHong Zhang const char *algTypes[2] = {"allgatherv","cyclic"}; 29214222ddf1SHong Zhang PetscInt alg,nalg = 2; 29224222ddf1SHong Zhang PetscBool flg = PETSC_FALSE; 29234222ddf1SHong Zhang 29244222ddf1SHong Zhang PetscFunctionBegin; 29254222ddf1SHong Zhang /* Set default algorithm */ 29264222ddf1SHong Zhang alg = 0; /* default is allgatherv */ 29275f80ce2aSJacob Faibussowitsch CHKERRQ(PetscStrcmp(product->alg,"default",&flg)); 29284222ddf1SHong Zhang if (flg) { 29295f80ce2aSJacob Faibussowitsch CHKERRQ(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg])); 29304222ddf1SHong Zhang } 29314222ddf1SHong Zhang 29324222ddf1SHong Zhang /* Get runtime option */ 29334222ddf1SHong Zhang if (product->api_user) { 29344222ddf1SHong Zhang ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatMatTransposeMult","Mat");CHKERRQ(ierr); 29355f80ce2aSJacob Faibussowitsch CHKERRQ(PetscOptionsEList("-matmattransmult_mpidense_mpidense_via","Algorithmic approach","MatMatTransposeMult",algTypes,nalg,algTypes[alg],&alg,&flg)); 29364222ddf1SHong Zhang ierr = PetscOptionsEnd();CHKERRQ(ierr); 29374222ddf1SHong Zhang } else { 29384222ddf1SHong Zhang ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatProduct_ABt","Mat");CHKERRQ(ierr); 29395f80ce2aSJacob Faibussowitsch CHKERRQ(PetscOptionsEList("-mat_product_algorithm","Algorithmic approach","MatProduct_ABt",algTypes,nalg,algTypes[alg],&alg,&flg)); 29404222ddf1SHong Zhang ierr = PetscOptionsEnd();CHKERRQ(ierr); 29414222ddf1SHong Zhang } 29424222ddf1SHong Zhang if (flg) { 29435f80ce2aSJacob Faibussowitsch CHKERRQ(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg])); 29444222ddf1SHong Zhang } 29454222ddf1SHong Zhang 29464222ddf1SHong Zhang C->ops->mattransposemultsymbolic = MatMatTransposeMultSymbolic_MPIDense_MPIDense; 29474222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_ABt; 29484222ddf1SHong Zhang PetscFunctionReturn(0); 29494222ddf1SHong Zhang } 29504222ddf1SHong Zhang 29514222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense(Mat C) 29524222ddf1SHong Zhang { 29534222ddf1SHong Zhang Mat_Product *product = C->product; 29544222ddf1SHong Zhang 29554222ddf1SHong Zhang PetscFunctionBegin; 29564222ddf1SHong Zhang switch (product->type) { 29574222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 29584222ddf1SHong Zhang case MATPRODUCT_AB: 29595f80ce2aSJacob Faibussowitsch CHKERRQ(MatProductSetFromOptions_MPIDense_AB(C)); 29604222ddf1SHong Zhang break; 29614222ddf1SHong Zhang #endif 29624222ddf1SHong Zhang case MATPRODUCT_AtB: 29635f80ce2aSJacob Faibussowitsch CHKERRQ(MatProductSetFromOptions_MPIDense_AtB(C)); 29644222ddf1SHong Zhang break; 29654222ddf1SHong Zhang case MATPRODUCT_ABt: 29665f80ce2aSJacob Faibussowitsch CHKERRQ(MatProductSetFromOptions_MPIDense_ABt(C)); 29674222ddf1SHong Zhang break; 29686718818eSStefano Zampini default: 29696718818eSStefano Zampini break; 29704222ddf1SHong Zhang } 29714222ddf1SHong Zhang PetscFunctionReturn(0); 29724222ddf1SHong Zhang } 2973