1be1d678aSKris Buschelman 2ed3cc1f0SBarry Smith /* 3ed3cc1f0SBarry Smith Basic functions for basic parallel dense matrices. 4ed3cc1f0SBarry Smith */ 5ed3cc1f0SBarry Smith 6c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h> /*I "petscmat.h" I*/ 78949adfdSHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 8baa3c1c6SHong Zhang #include <petscblaslapack.h> 98965ea79SLois Curfman McInnes 10ab92ecdeSBarry Smith /*@ 11ab92ecdeSBarry Smith 12ab92ecdeSBarry Smith MatDenseGetLocalMatrix - For a MATMPIDENSE or MATSEQDENSE matrix returns the sequential 13ab92ecdeSBarry Smith matrix that represents the operator. For sequential matrices it returns itself. 14ab92ecdeSBarry Smith 15ab92ecdeSBarry Smith Input Parameter: 16ab92ecdeSBarry Smith . A - the Seq or MPI dense matrix 17ab92ecdeSBarry Smith 18ab92ecdeSBarry Smith Output Parameter: 19ab92ecdeSBarry Smith . B - the inner matrix 20ab92ecdeSBarry Smith 218e6c10adSSatish Balay Level: intermediate 228e6c10adSSatish Balay 23ab92ecdeSBarry Smith @*/ 24ab92ecdeSBarry Smith PetscErrorCode MatDenseGetLocalMatrix(Mat A,Mat *B) 25ab92ecdeSBarry Smith { 26ab92ecdeSBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 27ace3abfcSBarry Smith PetscBool flg; 28ab92ecdeSBarry Smith 29ab92ecdeSBarry Smith PetscFunctionBegin; 30d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 31d5ea218eSStefano Zampini PetscValidPointer(B,2); 329566063dSJacob Faibussowitsch PetscCall(PetscObjectBaseTypeCompare((PetscObject)A,MATMPIDENSE,&flg)); 332205254eSKarl Rupp if (flg) *B = mat->A; 34f140bc17SStefano Zampini else { 359566063dSJacob Faibussowitsch PetscCall(PetscObjectBaseTypeCompare((PetscObject)A,MATSEQDENSE,&flg)); 3628b400f6SJacob Faibussowitsch PetscCheck(flg,PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Not for matrix type %s",((PetscObject)A)->type_name); 37f140bc17SStefano Zampini *B = A; 38f140bc17SStefano Zampini } 39ab92ecdeSBarry Smith PetscFunctionReturn(0); 40ab92ecdeSBarry Smith } 41ab92ecdeSBarry Smith 42a76f77c3SStefano Zampini PetscErrorCode MatCopy_MPIDense(Mat A, Mat B, MatStructure s) 43a76f77c3SStefano Zampini { 44a76f77c3SStefano Zampini Mat_MPIDense *Amat = (Mat_MPIDense*)A->data; 45a76f77c3SStefano Zampini Mat_MPIDense *Bmat = (Mat_MPIDense*)B->data; 46a76f77c3SStefano Zampini 47a76f77c3SStefano Zampini PetscFunctionBegin; 489566063dSJacob Faibussowitsch PetscCall(MatCopy(Amat->A,Bmat->A,s)); 49a76f77c3SStefano Zampini PetscFunctionReturn(0); 50a76f77c3SStefano Zampini } 51a76f77c3SStefano Zampini 52*2f605a99SJose E. Roman PetscErrorCode MatShift_MPIDense(Mat A,PetscScalar alpha) 53*2f605a99SJose E. Roman { 54*2f605a99SJose E. Roman Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 55*2f605a99SJose E. Roman PetscInt j,lda,rstart = A->rmap->rstart,rend = A->rmap->rend,rend2; 56*2f605a99SJose E. Roman PetscScalar *v; 57*2f605a99SJose E. Roman 58*2f605a99SJose E. Roman PetscFunctionBegin; 59*2f605a99SJose E. Roman PetscCall(MatDenseGetArray(mat->A,&v)); 60*2f605a99SJose E. Roman PetscCall(MatDenseGetLDA(mat->A,&lda)); 61*2f605a99SJose E. Roman rend2 = PetscMin(rend,A->cmap->N); 62*2f605a99SJose E. Roman if (rend2>rstart) { 63*2f605a99SJose E. Roman for (j=rstart; j<rend2; j++) v[j-rstart+j*lda] += alpha; 64*2f605a99SJose E. Roman PetscCall(PetscLogFlops(rend2-rstart)); 65*2f605a99SJose E. Roman } 66*2f605a99SJose E. Roman PetscCall(MatDenseRestoreArray(mat->A,&v)); 67*2f605a99SJose E. Roman PetscFunctionReturn(0); 68*2f605a99SJose E. Roman } 69*2f605a99SJose E. Roman 70ba8c8a56SBarry Smith PetscErrorCode MatGetRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 71ba8c8a56SBarry Smith { 72ba8c8a56SBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 73d0f46423SBarry Smith PetscInt lrow,rstart = A->rmap->rstart,rend = A->rmap->rend; 74ba8c8a56SBarry Smith 75ba8c8a56SBarry Smith PetscFunctionBegin; 76aed4548fSBarry Smith PetscCheck(row >= rstart && row < rend,PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows"); 77ba8c8a56SBarry Smith lrow = row - rstart; 789566063dSJacob Faibussowitsch PetscCall(MatGetRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v)); 79ba8c8a56SBarry Smith PetscFunctionReturn(0); 80ba8c8a56SBarry Smith } 81ba8c8a56SBarry Smith 82637a0070SStefano Zampini PetscErrorCode MatRestoreRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 83ba8c8a56SBarry Smith { 84637a0070SStefano Zampini Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 85637a0070SStefano Zampini PetscInt lrow,rstart = A->rmap->rstart,rend = A->rmap->rend; 86ba8c8a56SBarry Smith 87ba8c8a56SBarry Smith PetscFunctionBegin; 88aed4548fSBarry Smith PetscCheck(row >= rstart && row < rend,PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows"); 89637a0070SStefano Zampini lrow = row - rstart; 909566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v)); 91ba8c8a56SBarry Smith PetscFunctionReturn(0); 92ba8c8a56SBarry Smith } 93ba8c8a56SBarry Smith 9411bd1e4dSLisandro Dalcin PetscErrorCode MatGetDiagonalBlock_MPIDense(Mat A,Mat *a) 950de54da6SSatish Balay { 960de54da6SSatish Balay Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 97d0f46423SBarry Smith PetscInt m = A->rmap->n,rstart = A->rmap->rstart; 9887828ca2SBarry Smith PetscScalar *array; 990de54da6SSatish Balay MPI_Comm comm; 1004b6ae80fSStefano Zampini PetscBool flg; 10111bd1e4dSLisandro Dalcin Mat B; 1020de54da6SSatish Balay 1030de54da6SSatish Balay PetscFunctionBegin; 1049566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A,&flg)); 10528b400f6SJacob Faibussowitsch PetscCheck(flg,PETSC_COMM_SELF,PETSC_ERR_SUP,"Only square matrices supported."); 1069566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)A,"DiagonalBlock",(PetscObject*)&B)); 107616b8fbbSStefano Zampini if (!B) { /* This should use MatDenseGetSubMatrix (not create), but we would need a call like MatRestoreDiagonalBlock */ 1084b6ae80fSStefano Zampini 1099566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)mdn->A,MATSEQDENSECUDA,&flg)); 11028b400f6SJacob Faibussowitsch PetscCheck(!flg,PETSC_COMM_SELF,PETSC_ERR_SUP,"Not coded for %s. Send an email to petsc-dev@mcs.anl.gov to request this feature",MATSEQDENSECUDA); 1119566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)(mdn->A),&comm)); 1129566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,&B)); 1139566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B,m,m,m,m)); 1149566063dSJacob Faibussowitsch PetscCall(MatSetType(B,((PetscObject)mdn->A)->type_name)); 1159566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(mdn->A,(const PetscScalar**)&array)); 1169566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(B,array+m*rstart)); 1179566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(mdn->A,(const PetscScalar**)&array)); 1189566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)A,"DiagonalBlock",(PetscObject)B)); 11911bd1e4dSLisandro Dalcin *a = B; 1209566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 1212205254eSKarl Rupp } else *a = B; 1220de54da6SSatish Balay PetscFunctionReturn(0); 1230de54da6SSatish Balay } 1240de54da6SSatish Balay 12513f74950SBarry Smith PetscErrorCode MatSetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],const PetscScalar v[],InsertMode addv) 1268965ea79SLois Curfman McInnes { 12739b7565bSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)mat->data; 128d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 129ace3abfcSBarry Smith PetscBool roworiented = A->roworiented; 1308965ea79SLois Curfman McInnes 1313a40ed3dSBarry Smith PetscFunctionBegin; 1328965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 1335ef9f2a5SBarry Smith if (idxm[i] < 0) continue; 13408401ef6SPierre Jolivet PetscCheck(idxm[i] < mat->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 1358965ea79SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 1368965ea79SLois Curfman McInnes row = idxm[i] - rstart; 13739b7565bSBarry Smith if (roworiented) { 1389566063dSJacob Faibussowitsch PetscCall(MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv)); 1393a40ed3dSBarry Smith } else { 1408965ea79SLois Curfman McInnes for (j=0; j<n; j++) { 1415ef9f2a5SBarry Smith if (idxn[j] < 0) continue; 14208401ef6SPierre Jolivet PetscCheck(idxn[j] < mat->cmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 1439566063dSJacob Faibussowitsch PetscCall(MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv)); 14439b7565bSBarry Smith } 1458965ea79SLois Curfman McInnes } 1462205254eSKarl Rupp } else if (!A->donotstash) { 1475080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 14839b7565bSBarry Smith if (roworiented) { 1499566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash,idxm[i],n,idxn,v+i*n,PETSC_FALSE)); 150d36fbae8SSatish Balay } else { 1519566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash,idxm[i],n,idxn,v+i,m,PETSC_FALSE)); 15239b7565bSBarry Smith } 153b49de8d1SLois Curfman McInnes } 154b49de8d1SLois Curfman McInnes } 1553a40ed3dSBarry Smith PetscFunctionReturn(0); 156b49de8d1SLois Curfman McInnes } 157b49de8d1SLois Curfman McInnes 15813f74950SBarry Smith PetscErrorCode MatGetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 159b49de8d1SLois Curfman McInnes { 160b49de8d1SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 161d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 162b49de8d1SLois Curfman McInnes 1633a40ed3dSBarry Smith PetscFunctionBegin; 164b49de8d1SLois Curfman McInnes for (i=0; i<m; i++) { 16554c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 16654c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 167b49de8d1SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 168b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 169b49de8d1SLois Curfman McInnes for (j=0; j<n; j++) { 17054c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 17154c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 1729566063dSJacob Faibussowitsch PetscCall(MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j)); 173b49de8d1SLois Curfman McInnes } 174e7e72b3dSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 1758965ea79SLois Curfman McInnes } 1763a40ed3dSBarry Smith PetscFunctionReturn(0); 1778965ea79SLois Curfman McInnes } 1788965ea79SLois Curfman McInnes 17949a6ff4bSBarry Smith static PetscErrorCode MatDenseGetLDA_MPIDense(Mat A,PetscInt *lda) 18049a6ff4bSBarry Smith { 18149a6ff4bSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 18249a6ff4bSBarry Smith 18349a6ff4bSBarry Smith PetscFunctionBegin; 1849566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,lda)); 18549a6ff4bSBarry Smith PetscFunctionReturn(0); 18649a6ff4bSBarry Smith } 18749a6ff4bSBarry Smith 188ad16ce7aSStefano Zampini static PetscErrorCode MatDenseSetLDA_MPIDense(Mat A,PetscInt lda) 189ad16ce7aSStefano Zampini { 190ad16ce7aSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 19117359960SJose E. Roman PetscBool iscuda; 192ad16ce7aSStefano Zampini 193ad16ce7aSStefano Zampini PetscFunctionBegin; 19417359960SJose E. Roman if (!a->A) { 19528b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1969566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->rmap)); 1979566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->cmap)); 1989566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF,&a->A)); 1999566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)a->A)); 2009566063dSJacob Faibussowitsch PetscCall(MatSetSizes(a->A,A->rmap->n,A->cmap->N,A->rmap->n,A->cmap->N)); 2019566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A,MATMPIDENSECUDA,&iscuda)); 2029566063dSJacob Faibussowitsch PetscCall(MatSetType(a->A,iscuda ? MATSEQDENSECUDA : MATSEQDENSE)); 20317359960SJose E. Roman } 2049566063dSJacob Faibussowitsch PetscCall(MatDenseSetLDA(a->A,lda)); 205ad16ce7aSStefano Zampini PetscFunctionReturn(0); 206ad16ce7aSStefano Zampini } 207ad16ce7aSStefano Zampini 208637a0070SStefano Zampini static PetscErrorCode MatDenseGetArray_MPIDense(Mat A,PetscScalar **array) 209ff14e315SSatish Balay { 210ff14e315SSatish Balay Mat_MPIDense *a = (Mat_MPIDense*)A->data; 211ff14e315SSatish Balay 2123a40ed3dSBarry Smith PetscFunctionBegin; 21328b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2149566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(a->A,array)); 2153a40ed3dSBarry Smith PetscFunctionReturn(0); 216ff14e315SSatish Balay } 217ff14e315SSatish Balay 218637a0070SStefano Zampini static PetscErrorCode MatDenseGetArrayRead_MPIDense(Mat A,const PetscScalar **array) 2198572280aSBarry Smith { 2208572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 2218572280aSBarry Smith 2228572280aSBarry Smith PetscFunctionBegin; 22328b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2249566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A,array)); 2258572280aSBarry Smith PetscFunctionReturn(0); 2268572280aSBarry Smith } 2278572280aSBarry Smith 2286947451fSStefano Zampini static PetscErrorCode MatDenseGetArrayWrite_MPIDense(Mat A,PetscScalar **array) 2296947451fSStefano Zampini { 2306947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 2316947451fSStefano Zampini 2326947451fSStefano Zampini PetscFunctionBegin; 23328b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2349566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(a->A,array)); 2356947451fSStefano Zampini PetscFunctionReturn(0); 2366947451fSStefano Zampini } 2376947451fSStefano Zampini 238637a0070SStefano Zampini static PetscErrorCode MatDensePlaceArray_MPIDense(Mat A,const PetscScalar *array) 239d3042a70SBarry Smith { 240d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 241d3042a70SBarry Smith 242d3042a70SBarry Smith PetscFunctionBegin; 24328b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 24428b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2459566063dSJacob Faibussowitsch PetscCall(MatDensePlaceArray(a->A,array)); 246d3042a70SBarry Smith PetscFunctionReturn(0); 247d3042a70SBarry Smith } 248d3042a70SBarry Smith 249d3042a70SBarry Smith static PetscErrorCode MatDenseResetArray_MPIDense(Mat A) 250d3042a70SBarry Smith { 251d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 252d3042a70SBarry Smith 253d3042a70SBarry Smith PetscFunctionBegin; 25428b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 25528b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2569566063dSJacob Faibussowitsch PetscCall(MatDenseResetArray(a->A)); 257d3042a70SBarry Smith PetscFunctionReturn(0); 258d3042a70SBarry Smith } 259d3042a70SBarry Smith 260d5ea218eSStefano Zampini static PetscErrorCode MatDenseReplaceArray_MPIDense(Mat A,const PetscScalar *array) 261d5ea218eSStefano Zampini { 262d5ea218eSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 263d5ea218eSStefano Zampini 264d5ea218eSStefano Zampini PetscFunctionBegin; 26528b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 26628b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2679566063dSJacob Faibussowitsch PetscCall(MatDenseReplaceArray(a->A,array)); 268d5ea218eSStefano Zampini PetscFunctionReturn(0); 269d5ea218eSStefano Zampini } 270d5ea218eSStefano Zampini 2717dae84e0SHong Zhang static PetscErrorCode MatCreateSubMatrix_MPIDense(Mat A,IS isrow,IS iscol,MatReuse scall,Mat *B) 272ca3fa75bSLois Curfman McInnes { 273ca3fa75bSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data,*newmatd; 274637a0070SStefano Zampini PetscInt lda,i,j,rstart,rend,nrows,ncols,Ncols,nlrows,nlcols; 2755d0c19d7SBarry Smith const PetscInt *irow,*icol; 276637a0070SStefano Zampini const PetscScalar *v; 277637a0070SStefano Zampini PetscScalar *bv; 278ca3fa75bSLois Curfman McInnes Mat newmat; 2794aa3045dSJed Brown IS iscol_local; 28042a884f0SBarry Smith MPI_Comm comm_is,comm_mat; 281ca3fa75bSLois Curfman McInnes 282ca3fa75bSLois Curfman McInnes PetscFunctionBegin; 2839566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A,&comm_mat)); 2849566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)iscol,&comm_is)); 28508401ef6SPierre Jolivet PetscCheck(comm_mat == comm_is,PETSC_COMM_SELF,PETSC_ERR_ARG_NOTSAMECOMM,"IS communicator must match matrix communicator"); 28642a884f0SBarry Smith 2879566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol,&iscol_local)); 2889566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isrow,&irow)); 2899566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_local,&icol)); 2909566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow,&nrows)); 2919566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol,&ncols)); 2929566063dSJacob Faibussowitsch PetscCall(ISGetSize(iscol,&Ncols)); /* global number of columns, size of iscol_local */ 293ca3fa75bSLois Curfman McInnes 294ca3fa75bSLois Curfman McInnes /* No parallel redistribution currently supported! Should really check each index set 2957eba5e9cSLois Curfman McInnes to comfirm that it is OK. ... Currently supports only submatrix same partitioning as 2967eba5e9cSLois Curfman McInnes original matrix! */ 297ca3fa75bSLois Curfman McInnes 2989566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A,&nlrows,&nlcols)); 2999566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A,&rstart,&rend)); 300ca3fa75bSLois Curfman McInnes 301ca3fa75bSLois Curfman McInnes /* Check submatrix call */ 302ca3fa75bSLois Curfman McInnes if (scall == MAT_REUSE_MATRIX) { 303e32f2f54SBarry Smith /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */ 3047eba5e9cSLois Curfman McInnes /* Really need to test rows and column sizes! */ 305ca3fa75bSLois Curfman McInnes newmat = *B; 306ca3fa75bSLois Curfman McInnes } else { 307ca3fa75bSLois Curfman McInnes /* Create and fill new matrix */ 3089566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&newmat)); 3099566063dSJacob Faibussowitsch PetscCall(MatSetSizes(newmat,nrows,ncols,PETSC_DECIDE,Ncols)); 3109566063dSJacob Faibussowitsch PetscCall(MatSetType(newmat,((PetscObject)A)->type_name)); 3119566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(newmat,NULL)); 312ca3fa75bSLois Curfman McInnes } 313ca3fa75bSLois Curfman McInnes 314ca3fa75bSLois Curfman McInnes /* Now extract the data pointers and do the copy, column at a time */ 315ca3fa75bSLois Curfman McInnes newmatd = (Mat_MPIDense*)newmat->data; 3169566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(newmatd->A,&bv)); 3179566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(mat->A,&v)); 3189566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(mat->A,&lda)); 3194aa3045dSJed Brown for (i=0; i<Ncols; i++) { 320637a0070SStefano Zampini const PetscScalar *av = v + lda*icol[i]; 321ca3fa75bSLois Curfman McInnes for (j=0; j<nrows; j++) { 3227eba5e9cSLois Curfman McInnes *bv++ = av[irow[j] - rstart]; 323ca3fa75bSLois Curfman McInnes } 324ca3fa75bSLois Curfman McInnes } 3259566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(mat->A,&v)); 3269566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(newmatd->A,&bv)); 327ca3fa75bSLois Curfman McInnes 328ca3fa75bSLois Curfman McInnes /* Assemble the matrices so that the correct flags are set */ 3299566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY)); 3309566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY)); 331ca3fa75bSLois Curfman McInnes 332ca3fa75bSLois Curfman McInnes /* Free work space */ 3339566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isrow,&irow)); 3349566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_local,&icol)); 3359566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 336ca3fa75bSLois Curfman McInnes *B = newmat; 337ca3fa75bSLois Curfman McInnes PetscFunctionReturn(0); 338ca3fa75bSLois Curfman McInnes } 339ca3fa75bSLois Curfman McInnes 340637a0070SStefano Zampini PetscErrorCode MatDenseRestoreArray_MPIDense(Mat A,PetscScalar **array) 341ff14e315SSatish Balay { 34273a71a0fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 34373a71a0fSBarry Smith 3443a40ed3dSBarry Smith PetscFunctionBegin; 3459566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(a->A,array)); 3463a40ed3dSBarry Smith PetscFunctionReturn(0); 347ff14e315SSatish Balay } 348ff14e315SSatish Balay 349637a0070SStefano Zampini PetscErrorCode MatDenseRestoreArrayRead_MPIDense(Mat A,const PetscScalar **array) 3508572280aSBarry Smith { 3518572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 3528572280aSBarry Smith 3538572280aSBarry Smith PetscFunctionBegin; 3549566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A,array)); 3558572280aSBarry Smith PetscFunctionReturn(0); 3568572280aSBarry Smith } 3578572280aSBarry Smith 3586947451fSStefano Zampini PetscErrorCode MatDenseRestoreArrayWrite_MPIDense(Mat A,PetscScalar **array) 3596947451fSStefano Zampini { 3606947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 3616947451fSStefano Zampini 3626947451fSStefano Zampini PetscFunctionBegin; 3639566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(a->A,array)); 3646947451fSStefano Zampini PetscFunctionReturn(0); 3656947451fSStefano Zampini } 3666947451fSStefano Zampini 367dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode) 3688965ea79SLois Curfman McInnes { 36939ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 37013f74950SBarry Smith PetscInt nstash,reallocs; 3718965ea79SLois Curfman McInnes 3723a40ed3dSBarry Smith PetscFunctionBegin; 3734067683fSStefano Zampini if (mdn->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 3748965ea79SLois Curfman McInnes 3759566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range)); 3769566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs)); 3779566063dSJacob Faibussowitsch PetscCall(PetscInfo(mdn->A,"Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n",nstash,reallocs)); 3783a40ed3dSBarry Smith PetscFunctionReturn(0); 3798965ea79SLois Curfman McInnes } 3808965ea79SLois Curfman McInnes 381dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode) 3828965ea79SLois Curfman McInnes { 38339ddd567SLois Curfman McInnes Mat_MPIDense *mdn=(Mat_MPIDense*)mat->data; 38413f74950SBarry Smith PetscInt i,*row,*col,flg,j,rstart,ncols; 38513f74950SBarry Smith PetscMPIInt n; 38687828ca2SBarry Smith PetscScalar *val; 3878965ea79SLois Curfman McInnes 3883a40ed3dSBarry Smith PetscFunctionBegin; 389910cf402Sprj- if (!mdn->donotstash && !mat->nooffprocentries) { 3908965ea79SLois Curfman McInnes /* wait on receives */ 3917ef1d9bdSSatish Balay while (1) { 3929566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg)); 3937ef1d9bdSSatish Balay if (!flg) break; 3948965ea79SLois Curfman McInnes 3957ef1d9bdSSatish Balay for (i=0; i<n;) { 3967ef1d9bdSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 3972205254eSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 3982205254eSKarl Rupp if (row[j] != rstart) break; 3992205254eSKarl Rupp } 4007ef1d9bdSSatish Balay if (j < n) ncols = j-i; 4017ef1d9bdSSatish Balay else ncols = n-i; 4027ef1d9bdSSatish Balay /* Now assemble all these values with a single function call */ 4039566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,mat->insertmode)); 4047ef1d9bdSSatish Balay i = j; 4058965ea79SLois Curfman McInnes } 4067ef1d9bdSSatish Balay } 4079566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 408910cf402Sprj- } 4098965ea79SLois Curfman McInnes 4109566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mdn->A,mode)); 4119566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mdn->A,mode)); 4123a40ed3dSBarry Smith PetscFunctionReturn(0); 4138965ea79SLois Curfman McInnes } 4148965ea79SLois Curfman McInnes 415dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIDense(Mat A) 4168965ea79SLois Curfman McInnes { 41739ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 4183a40ed3dSBarry Smith 4193a40ed3dSBarry Smith PetscFunctionBegin; 4209566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 4213a40ed3dSBarry Smith PetscFunctionReturn(0); 4228965ea79SLois Curfman McInnes } 4238965ea79SLois Curfman McInnes 424637a0070SStefano Zampini PetscErrorCode MatZeroRows_MPIDense(Mat A,PetscInt n,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 4258965ea79SLois Curfman McInnes { 42639ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 427637a0070SStefano Zampini PetscInt i,len,*lrows; 428637a0070SStefano Zampini 429637a0070SStefano Zampini PetscFunctionBegin; 430637a0070SStefano Zampini /* get locally owned rows */ 4319566063dSJacob Faibussowitsch PetscCall(PetscLayoutMapLocal(A->rmap,n,rows,&len,&lrows,NULL)); 432637a0070SStefano Zampini /* fix right hand side if needed */ 433637a0070SStefano Zampini if (x && b) { 43497b48c8fSBarry Smith const PetscScalar *xx; 43597b48c8fSBarry Smith PetscScalar *bb; 4368965ea79SLois Curfman McInnes 4379566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 4389566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(b, &bb)); 439637a0070SStefano Zampini for (i=0;i<len;++i) bb[lrows[i]] = diag*xx[lrows[i]]; 4409566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 4419566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(b, &bb)); 44297b48c8fSBarry Smith } 4439566063dSJacob Faibussowitsch PetscCall(MatZeroRows(l->A,len,lrows,0.0,NULL,NULL)); 444e2eb51b1SBarry Smith if (diag != 0.0) { 445637a0070SStefano Zampini Vec d; 446b9679d65SBarry Smith 4479566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(A,NULL,&d)); 4489566063dSJacob Faibussowitsch PetscCall(VecSet(d,diag)); 4499566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet(A,d,INSERT_VALUES)); 4509566063dSJacob Faibussowitsch PetscCall(VecDestroy(&d)); 451b9679d65SBarry Smith } 4529566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 4533a40ed3dSBarry Smith PetscFunctionReturn(0); 4548965ea79SLois Curfman McInnes } 4558965ea79SLois Curfman McInnes 456cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMult_SeqDense(Mat,Vec,Vec); 457cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultAdd_SeqDense(Mat,Vec,Vec,Vec); 458cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTranspose_SeqDense(Mat,Vec,Vec); 459cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTransposeAdd_SeqDense(Mat,Vec,Vec,Vec); 460cc2e6a90SBarry Smith 461dfbe8321SBarry Smith PetscErrorCode MatMult_MPIDense(Mat mat,Vec xx,Vec yy) 4628965ea79SLois Curfman McInnes { 46339ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 464637a0070SStefano Zampini const PetscScalar *ax; 465637a0070SStefano Zampini PetscScalar *ay; 466d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 467c456f294SBarry Smith 4683a40ed3dSBarry Smith PetscFunctionBegin; 4696f08ad05SPierre Jolivet if (!mdn->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(mat)); 4709566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(xx,&ax,&axmtype)); 4719566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(mdn->lvec,&ay,&aymtype)); 4729566063dSJacob Faibussowitsch PetscCall(PetscSFBcastWithMemTypeBegin(mdn->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPI_REPLACE)); 4739566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ax,ay,MPI_REPLACE)); 4749566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(mdn->lvec,&ay)); 4759566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(xx,&ax)); 4769566063dSJacob Faibussowitsch PetscCall((*mdn->A->ops->mult)(mdn->A,mdn->lvec,yy)); 4773a40ed3dSBarry Smith PetscFunctionReturn(0); 4788965ea79SLois Curfman McInnes } 4798965ea79SLois Curfman McInnes 480dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz) 4818965ea79SLois Curfman McInnes { 48239ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 483637a0070SStefano Zampini const PetscScalar *ax; 484637a0070SStefano Zampini PetscScalar *ay; 485d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 486c456f294SBarry Smith 4873a40ed3dSBarry Smith PetscFunctionBegin; 4886f08ad05SPierre Jolivet if (!mdn->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(mat)); 4899566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(xx,&ax,&axmtype)); 4909566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(mdn->lvec,&ay,&aymtype)); 4919566063dSJacob Faibussowitsch PetscCall(PetscSFBcastWithMemTypeBegin(mdn->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPI_REPLACE)); 4929566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ax,ay,MPI_REPLACE)); 4939566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(mdn->lvec,&ay)); 4949566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(xx,&ax)); 4959566063dSJacob Faibussowitsch PetscCall((*mdn->A->ops->multadd)(mdn->A,mdn->lvec,yy,zz)); 4963a40ed3dSBarry Smith PetscFunctionReturn(0); 4978965ea79SLois Curfman McInnes } 4988965ea79SLois Curfman McInnes 499dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIDense(Mat A,Vec xx,Vec yy) 500096963f5SLois Curfman McInnes { 501096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 502637a0070SStefano Zampini const PetscScalar *ax; 503637a0070SStefano Zampini PetscScalar *ay; 504d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 505096963f5SLois Curfman McInnes 5063a40ed3dSBarry Smith PetscFunctionBegin; 5076f08ad05SPierre Jolivet if (!a->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); 5089566063dSJacob Faibussowitsch PetscCall(VecSet(yy,0.0)); 5099566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A,xx,a->lvec)); 5109566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(a->lvec,&ax,&axmtype)); 5119566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(yy,&ay,&aymtype)); 5129566063dSJacob Faibussowitsch PetscCall(PetscSFReduceWithMemTypeBegin(a->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPIU_SUM)); 5139566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM)); 5149566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(a->lvec,&ax)); 5159566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(yy,&ay)); 5163a40ed3dSBarry Smith PetscFunctionReturn(0); 517096963f5SLois Curfman McInnes } 518096963f5SLois Curfman McInnes 519dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz) 520096963f5SLois Curfman McInnes { 521096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 522637a0070SStefano Zampini const PetscScalar *ax; 523637a0070SStefano Zampini PetscScalar *ay; 524d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 525096963f5SLois Curfman McInnes 5263a40ed3dSBarry Smith PetscFunctionBegin; 5276f08ad05SPierre Jolivet if (!a->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); 5289566063dSJacob Faibussowitsch PetscCall(VecCopy(yy,zz)); 5299566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A,xx,a->lvec)); 5309566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(a->lvec,&ax,&axmtype)); 5319566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(zz,&ay,&aymtype)); 5329566063dSJacob Faibussowitsch PetscCall(PetscSFReduceWithMemTypeBegin(a->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPIU_SUM)); 5339566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM)); 5349566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(a->lvec,&ax)); 5359566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(zz,&ay)); 5363a40ed3dSBarry Smith PetscFunctionReturn(0); 537096963f5SLois Curfman McInnes } 538096963f5SLois Curfman McInnes 539dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIDense(Mat A,Vec v) 5408965ea79SLois Curfman McInnes { 54139ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 542637a0070SStefano Zampini PetscInt lda,len,i,n,m = A->rmap->n,radd; 54387828ca2SBarry Smith PetscScalar *x,zero = 0.0; 544637a0070SStefano Zampini const PetscScalar *av; 545ed3cc1f0SBarry Smith 5463a40ed3dSBarry Smith PetscFunctionBegin; 5479566063dSJacob Faibussowitsch PetscCall(VecSet(v,zero)); 5489566063dSJacob Faibussowitsch PetscCall(VecGetArray(v,&x)); 5499566063dSJacob Faibussowitsch PetscCall(VecGetSize(v,&n)); 55008401ef6SPierre Jolivet PetscCheck(n == A->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec"); 551d0f46423SBarry Smith len = PetscMin(a->A->rmap->n,a->A->cmap->n); 552d0f46423SBarry Smith radd = A->rmap->rstart*m; 5539566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A,&av)); 5549566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 55544cd7ae7SLois Curfman McInnes for (i=0; i<len; i++) { 556637a0070SStefano Zampini x[i] = av[radd + i*lda + i]; 557096963f5SLois Curfman McInnes } 5589566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A,&av)); 5599566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v,&x)); 5603a40ed3dSBarry Smith PetscFunctionReturn(0); 5618965ea79SLois Curfman McInnes } 5628965ea79SLois Curfman McInnes 563dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIDense(Mat mat) 5648965ea79SLois Curfman McInnes { 5653501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 566ed3cc1f0SBarry Smith 5673a40ed3dSBarry Smith PetscFunctionBegin; 568aa482453SBarry Smith #if defined(PETSC_USE_LOG) 569c0aa6a63SJacob Faibussowitsch PetscLogObjectState((PetscObject)mat,"Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT,mat->rmap->N,mat->cmap->N); 5708965ea79SLois Curfman McInnes #endif 5719566063dSJacob Faibussowitsch PetscCall(MatStashDestroy_Private(&mat->stash)); 57228b400f6SJacob Faibussowitsch PetscCheck(!mdn->vecinuse,PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 57328b400f6SJacob Faibussowitsch PetscCheck(!mdn->matinuse,PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 5749566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mdn->A)); 5759566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mdn->lvec)); 5769566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&mdn->Mvctx)); 5779566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mdn->cvec)); 5789566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mdn->cmat)); 57901b82886SBarry Smith 5809566063dSJacob Faibussowitsch PetscCall(PetscFree(mat->data)); 5819566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)mat,NULL)); 5828baccfbdSHong Zhang 5839566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",NULL)); 5849566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseSetLDA_C",NULL)); 5859566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",NULL)); 5869566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",NULL)); 5879566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",NULL)); 5889566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",NULL)); 5899566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayWrite_C",NULL)); 5909566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayWrite_C",NULL)); 5919566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",NULL)); 5929566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",NULL)); 5939566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseReplaceArray_C",NULL)); 5949566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpiaij_mpidense_C",NULL)); 5959566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_mpiaij_C",NULL)); 5968baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 5979566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",NULL)); 5988baccfbdSHong Zhang #endif 599d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 6009566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_scalapack_C",NULL)); 601d24d4204SJose E. Roman #endif 6029566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",NULL)); 6039566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaij_mpidense_C",NULL)); 6049566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaij_C",NULL)); 6056718818eSStefano Zampini #if defined (PETSC_HAVE_CUDA) 6069566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaijcusparse_mpidense_C",NULL)); 6079566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaijcusparse_C",NULL)); 6086718818eSStefano Zampini #endif 6099566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",NULL)); 6109566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",NULL)); 6119566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",NULL)); 6129566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",NULL)); 6139566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",NULL)); 6149566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",NULL)); 6159566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",NULL)); 6169566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",NULL)); 6179566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetSubMatrix_C",NULL)); 6189566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreSubMatrix_C",NULL)); 6193a40ed3dSBarry Smith PetscFunctionReturn(0); 6208965ea79SLois Curfman McInnes } 62139ddd567SLois Curfman McInnes 62252c5f739Sprj- PETSC_INTERN PetscErrorCode MatView_SeqDense(Mat,PetscViewer); 62352c5f739Sprj- 6249804daf3SBarry Smith #include <petscdraw.h> 6256849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 6268965ea79SLois Curfman McInnes { 62739ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 628616b8fbbSStefano Zampini PetscMPIInt rank; 62919fd82e9SBarry Smith PetscViewerType vtype; 630ace3abfcSBarry Smith PetscBool iascii,isdraw; 631b0a32e0cSBarry Smith PetscViewer sviewer; 632f3ef73ceSBarry Smith PetscViewerFormat format; 6338965ea79SLois Curfman McInnes 6343a40ed3dSBarry Smith PetscFunctionBegin; 6359566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank)); 6369566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii)); 6379566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw)); 63832077d6dSBarry Smith if (iascii) { 6399566063dSJacob Faibussowitsch PetscCall(PetscViewerGetType(viewer,&vtype)); 6409566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer,&format)); 641456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 6424e220ebcSLois Curfman McInnes MatInfo info; 6439566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat,MAT_LOCAL,&info)); 6449566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 6459566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer," [%d] local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %" PetscInt_FMT " \n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory)); 6469566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 6479566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 6486f08ad05SPierre Jolivet if (mdn->Mvctx) PetscCall(PetscSFView(mdn->Mvctx,viewer)); 6493a40ed3dSBarry Smith PetscFunctionReturn(0); 650fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 6513a40ed3dSBarry Smith PetscFunctionReturn(0); 6528965ea79SLois Curfman McInnes } 653f1af5d2fSBarry Smith } else if (isdraw) { 654b0a32e0cSBarry Smith PetscDraw draw; 655ace3abfcSBarry Smith PetscBool isnull; 656f1af5d2fSBarry Smith 6579566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer,0,&draw)); 6589566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw,&isnull)); 659f1af5d2fSBarry Smith if (isnull) PetscFunctionReturn(0); 660f1af5d2fSBarry Smith } 66177ed5343SBarry Smith 6627da1fb6eSBarry Smith { 6638965ea79SLois Curfman McInnes /* assemble the entire matrix onto first processor. */ 6648965ea79SLois Curfman McInnes Mat A; 665d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,m,row,i,nz; 666ba8c8a56SBarry Smith PetscInt *cols; 667ba8c8a56SBarry Smith PetscScalar *vals; 6688965ea79SLois Curfman McInnes 6699566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat),&A)); 670dd400576SPatrick Sanan if (rank == 0) { 6719566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A,M,N,M,N)); 6723a40ed3dSBarry Smith } else { 6739566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A,0,0,M,N)); 6748965ea79SLois Curfman McInnes } 6757adad957SLisandro Dalcin /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */ 6769566063dSJacob Faibussowitsch PetscCall(MatSetType(A,MATMPIDENSE)); 6779566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(A,NULL)); 6789566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)A)); 6798965ea79SLois Curfman McInnes 68039ddd567SLois Curfman McInnes /* Copy the matrix ... This isn't the most efficient means, 68139ddd567SLois Curfman McInnes but it's quick for now */ 68251022da4SBarry Smith A->insertmode = INSERT_VALUES; 6832205254eSKarl Rupp 6842205254eSKarl Rupp row = mat->rmap->rstart; 6852205254eSKarl Rupp m = mdn->A->rmap->n; 6868965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 6879566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIDense(mat,row,&nz,&cols,&vals)); 6889566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIDense(A,1,&row,nz,cols,vals,INSERT_VALUES)); 6899566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIDense(mat,row,&nz,&cols,&vals)); 69039ddd567SLois Curfman McInnes row++; 6918965ea79SLois Curfman McInnes } 6928965ea79SLois Curfman McInnes 6939566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY)); 6949566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY)); 6959566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer)); 696dd400576SPatrick Sanan if (rank == 0) { 6979566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)((Mat_MPIDense*)(A->data))->A,((PetscObject)mat)->name)); 6989566063dSJacob Faibussowitsch PetscCall(MatView_SeqDense(((Mat_MPIDense*)(A->data))->A,sviewer)); 6998965ea79SLois Curfman McInnes } 7009566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer)); 7019566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 7029566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 7038965ea79SLois Curfman McInnes } 7043a40ed3dSBarry Smith PetscFunctionReturn(0); 7058965ea79SLois Curfman McInnes } 7068965ea79SLois Curfman McInnes 707dfbe8321SBarry Smith PetscErrorCode MatView_MPIDense(Mat mat,PetscViewer viewer) 7088965ea79SLois Curfman McInnes { 709ace3abfcSBarry Smith PetscBool iascii,isbinary,isdraw,issocket; 7108965ea79SLois Curfman McInnes 711433994e6SBarry Smith PetscFunctionBegin; 7129566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii)); 7139566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary)); 7149566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket)); 7159566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw)); 7160f5bd95cSBarry Smith 71732077d6dSBarry Smith if (iascii || issocket || isdraw) { 7189566063dSJacob Faibussowitsch PetscCall(MatView_MPIDense_ASCIIorDraworSocket(mat,viewer)); 7190f5bd95cSBarry Smith } else if (isbinary) { 7209566063dSJacob Faibussowitsch PetscCall(MatView_Dense_Binary(mat,viewer)); 72111aeaf0aSBarry Smith } 7223a40ed3dSBarry Smith PetscFunctionReturn(0); 7238965ea79SLois Curfman McInnes } 7248965ea79SLois Curfman McInnes 725dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info) 7268965ea79SLois Curfman McInnes { 7273501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 7283501a2bdSLois Curfman McInnes Mat mdn = mat->A; 7293966268fSBarry Smith PetscLogDouble isend[5],irecv[5]; 7308965ea79SLois Curfman McInnes 7313a40ed3dSBarry Smith PetscFunctionBegin; 7324e220ebcSLois Curfman McInnes info->block_size = 1.0; 7332205254eSKarl Rupp 7349566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mdn,MAT_LOCAL,info)); 7352205254eSKarl Rupp 7364e220ebcSLois Curfman McInnes isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 7374e220ebcSLois Curfman McInnes isend[3] = info->memory; isend[4] = info->mallocs; 7388965ea79SLois Curfman McInnes if (flag == MAT_LOCAL) { 7394e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 7404e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 7414e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 7424e220ebcSLois Curfman McInnes info->memory = isend[3]; 7434e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 7448965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 7451c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_MAX,PetscObjectComm((PetscObject)A))); 7462205254eSKarl Rupp 7474e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7484e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7494e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7504e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7514e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7528965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 7531c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_SUM,PetscObjectComm((PetscObject)A))); 7542205254eSKarl Rupp 7554e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7564e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7574e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7584e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7594e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7608965ea79SLois Curfman McInnes } 7614e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 7624e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 7634e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 7643a40ed3dSBarry Smith PetscFunctionReturn(0); 7658965ea79SLois Curfman McInnes } 7668965ea79SLois Curfman McInnes 767ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIDense(Mat A,MatOption op,PetscBool flg) 7688965ea79SLois Curfman McInnes { 76939ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 7708965ea79SLois Curfman McInnes 7713a40ed3dSBarry Smith PetscFunctionBegin; 77212c028f9SKris Buschelman switch (op) { 773512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 77412c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 77512c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 77643674050SBarry Smith MatCheckPreallocated(A,1); 7779566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A,op,flg)); 77812c028f9SKris Buschelman break; 77912c028f9SKris Buschelman case MAT_ROW_ORIENTED: 78043674050SBarry Smith MatCheckPreallocated(A,1); 7814e0d8c25SBarry Smith a->roworiented = flg; 7829566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A,op,flg)); 78312c028f9SKris Buschelman break; 7848c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 78513fa8e87SLisandro Dalcin case MAT_KEEP_NONZERO_PATTERN: 78612c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 787071fcb05SBarry Smith case MAT_SORTED_FULL: 7889566063dSJacob Faibussowitsch PetscCall(PetscInfo(A,"Option %s ignored\n",MatOptions[op])); 78912c028f9SKris Buschelman break; 79012c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 7914e0d8c25SBarry Smith a->donotstash = flg; 79212c028f9SKris Buschelman break; 79377e54ba9SKris Buschelman case MAT_SYMMETRIC: 79477e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 7959a4540c5SBarry Smith case MAT_HERMITIAN: 7969a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 797600fe468SBarry Smith case MAT_IGNORE_LOWER_TRIANGULAR: 7985d7aebe8SStefano Zampini case MAT_IGNORE_ZERO_ENTRIES: 7999566063dSJacob Faibussowitsch PetscCall(PetscInfo(A,"Option %s ignored\n",MatOptions[op])); 80077e54ba9SKris Buschelman break; 80112c028f9SKris Buschelman default: 80298921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %s",MatOptions[op]); 8033a40ed3dSBarry Smith } 8043a40ed3dSBarry Smith PetscFunctionReturn(0); 8058965ea79SLois Curfman McInnes } 8068965ea79SLois Curfman McInnes 807dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIDense(Mat A,Vec ll,Vec rr) 8085b2fa520SLois Curfman McInnes { 8095b2fa520SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 810637a0070SStefano Zampini const PetscScalar *l; 811637a0070SStefano Zampini PetscScalar x,*v,*vv,*r; 812637a0070SStefano Zampini PetscInt i,j,s2a,s3a,s2,s3,m=mdn->A->rmap->n,n=mdn->A->cmap->n,lda; 8135b2fa520SLois Curfman McInnes 8145b2fa520SLois Curfman McInnes PetscFunctionBegin; 8159566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(mdn->A,&vv)); 8169566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(mdn->A,&lda)); 8179566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A,&s2,&s3)); 8185b2fa520SLois Curfman McInnes if (ll) { 8199566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll,&s2a)); 82008401ef6SPierre Jolivet PetscCheck(s2a == s2,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vector non-conforming local size, %" PetscInt_FMT " != %" PetscInt_FMT, s2a, s2); 8219566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(ll,&l)); 8225b2fa520SLois Curfman McInnes for (i=0; i<m; i++) { 8235b2fa520SLois Curfman McInnes x = l[i]; 824637a0070SStefano Zampini v = vv + i; 825637a0070SStefano Zampini for (j=0; j<n; j++) { (*v) *= x; v+= lda;} 8265b2fa520SLois Curfman McInnes } 8279566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(ll,&l)); 8289566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(1.0*n*m)); 8295b2fa520SLois Curfman McInnes } 8305b2fa520SLois Curfman McInnes if (rr) { 831637a0070SStefano Zampini const PetscScalar *ar; 832637a0070SStefano Zampini 8339566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr,&s3a)); 83408401ef6SPierre Jolivet PetscCheck(s3a == s3,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vec non-conforming local size, %" PetscInt_FMT " != %" PetscInt_FMT ".", s3a, s3); 8359566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(rr,&ar)); 8366f08ad05SPierre Jolivet if (!mdn->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); 8379566063dSJacob Faibussowitsch PetscCall(VecGetArray(mdn->lvec,&r)); 8389566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(mdn->Mvctx,MPIU_SCALAR,ar,r,MPI_REPLACE)); 8399566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ar,r,MPI_REPLACE)); 8409566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(rr,&ar)); 8415b2fa520SLois Curfman McInnes for (i=0; i<n; i++) { 8425b2fa520SLois Curfman McInnes x = r[i]; 843637a0070SStefano Zampini v = vv + i*lda; 8442205254eSKarl Rupp for (j=0; j<m; j++) (*v++) *= x; 8455b2fa520SLois Curfman McInnes } 8469566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mdn->lvec,&r)); 8479566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(1.0*n*m)); 8485b2fa520SLois Curfman McInnes } 8499566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(mdn->A,&vv)); 8505b2fa520SLois Curfman McInnes PetscFunctionReturn(0); 8515b2fa520SLois Curfman McInnes } 8525b2fa520SLois Curfman McInnes 853dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIDense(Mat A,NormType type,PetscReal *nrm) 854096963f5SLois Curfman McInnes { 8553501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 85613f74950SBarry Smith PetscInt i,j; 857616b8fbbSStefano Zampini PetscMPIInt size; 858329f5518SBarry Smith PetscReal sum = 0.0; 859637a0070SStefano Zampini const PetscScalar *av,*v; 8603501a2bdSLois Curfman McInnes 8613a40ed3dSBarry Smith PetscFunctionBegin; 8629566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(mdn->A,&av)); 863637a0070SStefano Zampini v = av; 8649566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A),&size)); 865616b8fbbSStefano Zampini if (size == 1) { 8669566063dSJacob Faibussowitsch PetscCall(MatNorm(mdn->A,type,nrm)); 8673501a2bdSLois Curfman McInnes } else { 8683501a2bdSLois Curfman McInnes if (type == NORM_FROBENIUS) { 869d0f46423SBarry Smith for (i=0; i<mdn->A->cmap->n*mdn->A->rmap->n; i++) { 870329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 8713501a2bdSLois Curfman McInnes } 8721c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A))); 8738f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 8749566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0*mdn->A->cmap->n*mdn->A->rmap->n)); 8753a40ed3dSBarry Smith } else if (type == NORM_1) { 876329f5518SBarry Smith PetscReal *tmp,*tmp2; 8779566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(A->cmap->N,&tmp,A->cmap->N,&tmp2)); 878064f8208SBarry Smith *nrm = 0.0; 879637a0070SStefano Zampini v = av; 880d0f46423SBarry Smith for (j=0; j<mdn->A->cmap->n; j++) { 881d0f46423SBarry Smith for (i=0; i<mdn->A->rmap->n; i++) { 88267e560aaSBarry Smith tmp[j] += PetscAbsScalar(*v); v++; 8833501a2bdSLois Curfman McInnes } 8843501a2bdSLois Curfman McInnes } 8851c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(tmp,tmp2,A->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A))); 886d0f46423SBarry Smith for (j=0; j<A->cmap->N; j++) { 887064f8208SBarry Smith if (tmp2[j] > *nrm) *nrm = tmp2[j]; 8883501a2bdSLois Curfman McInnes } 8899566063dSJacob Faibussowitsch PetscCall(PetscFree2(tmp,tmp2)); 8909566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(A->cmap->n*A->rmap->n)); 8913a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 892329f5518SBarry Smith PetscReal ntemp; 8939566063dSJacob Faibussowitsch PetscCall(MatNorm(mdn->A,type,&ntemp)); 8941c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&ntemp,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A))); 895ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"No support for two norm"); 8963501a2bdSLois Curfman McInnes } 8979566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(mdn->A,&av)); 8983a40ed3dSBarry Smith PetscFunctionReturn(0); 8993501a2bdSLois Curfman McInnes } 9003501a2bdSLois Curfman McInnes 901fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIDense(Mat A,MatReuse reuse,Mat *matout) 9023501a2bdSLois Curfman McInnes { 9033501a2bdSLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 9043501a2bdSLois Curfman McInnes Mat B; 905d0f46423SBarry Smith PetscInt M = A->rmap->N,N = A->cmap->N,m,n,*rwork,rstart = A->rmap->rstart; 906637a0070SStefano Zampini PetscInt j,i,lda; 90787828ca2SBarry Smith PetscScalar *v; 9083501a2bdSLois Curfman McInnes 9093a40ed3dSBarry Smith PetscFunctionBegin; 910cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 9119566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&B)); 9129566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B,A->cmap->n,A->rmap->n,N,M)); 9139566063dSJacob Faibussowitsch PetscCall(MatSetType(B,((PetscObject)A)->type_name)); 9149566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(B,NULL)); 915637a0070SStefano Zampini } else B = *matout; 9163501a2bdSLois Curfman McInnes 917637a0070SStefano Zampini m = a->A->rmap->n; n = a->A->cmap->n; 9189566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A,(const PetscScalar**)&v)); 9199566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 9209566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m,&rwork)); 9213501a2bdSLois Curfman McInnes for (i=0; i<m; i++) rwork[i] = rstart + i; 9221acff37aSSatish Balay for (j=0; j<n; j++) { 9239566063dSJacob Faibussowitsch PetscCall(MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES)); 924637a0070SStefano Zampini v += lda; 9253501a2bdSLois Curfman McInnes } 9269566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A,(const PetscScalar**)&v)); 9279566063dSJacob Faibussowitsch PetscCall(PetscFree(rwork)); 9289566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY)); 9299566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY)); 930cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) { 9313501a2bdSLois Curfman McInnes *matout = B; 9323501a2bdSLois Curfman McInnes } else { 9339566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(A,&B)); 9343501a2bdSLois Curfman McInnes } 9353a40ed3dSBarry Smith PetscFunctionReturn(0); 936096963f5SLois Curfman McInnes } 937096963f5SLois Curfman McInnes 9386849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat*); 93952c5f739Sprj- PETSC_INTERN PetscErrorCode MatScale_MPIDense(Mat,PetscScalar); 9408965ea79SLois Curfman McInnes 9414994cf47SJed Brown PetscErrorCode MatSetUp_MPIDense(Mat A) 942273d9f13SBarry Smith { 943273d9f13SBarry Smith PetscFunctionBegin; 9449566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->rmap)); 9459566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->cmap)); 94618992e5dSStefano Zampini if (!A->preallocated) { 9479566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(A,NULL)); 94818992e5dSStefano Zampini } 949273d9f13SBarry Smith PetscFunctionReturn(0); 950273d9f13SBarry Smith } 951273d9f13SBarry Smith 952488007eeSBarry Smith PetscErrorCode MatAXPY_MPIDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str) 953488007eeSBarry Smith { 954488007eeSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)Y->data, *B = (Mat_MPIDense*)X->data; 955488007eeSBarry Smith 956488007eeSBarry Smith PetscFunctionBegin; 9579566063dSJacob Faibussowitsch PetscCall(MatAXPY(A->A,alpha,B->A,str)); 958488007eeSBarry Smith PetscFunctionReturn(0); 959488007eeSBarry Smith } 960488007eeSBarry Smith 9617087cfbeSBarry Smith PetscErrorCode MatConjugate_MPIDense(Mat mat) 962ba337c44SJed Brown { 963ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)mat->data; 964ba337c44SJed Brown 965ba337c44SJed Brown PetscFunctionBegin; 9669566063dSJacob Faibussowitsch PetscCall(MatConjugate(a->A)); 967ba337c44SJed Brown PetscFunctionReturn(0); 968ba337c44SJed Brown } 969ba337c44SJed Brown 970ba337c44SJed Brown PetscErrorCode MatRealPart_MPIDense(Mat A) 971ba337c44SJed Brown { 972ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 973ba337c44SJed Brown 974ba337c44SJed Brown PetscFunctionBegin; 9759566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 976ba337c44SJed Brown PetscFunctionReturn(0); 977ba337c44SJed Brown } 978ba337c44SJed Brown 979ba337c44SJed Brown PetscErrorCode MatImaginaryPart_MPIDense(Mat A) 980ba337c44SJed Brown { 981ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 982ba337c44SJed Brown 983ba337c44SJed Brown PetscFunctionBegin; 9849566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 985ba337c44SJed Brown PetscFunctionReturn(0); 986ba337c44SJed Brown } 987ba337c44SJed Brown 98849a6ff4bSBarry Smith static PetscErrorCode MatGetColumnVector_MPIDense(Mat A,Vec v,PetscInt col) 98949a6ff4bSBarry Smith { 990637a0070SStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*) A->data; 99149a6ff4bSBarry Smith 99249a6ff4bSBarry Smith PetscFunctionBegin; 99328b400f6SJacob Faibussowitsch PetscCheck(a->A,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Missing local matrix"); 99428b400f6SJacob Faibussowitsch PetscCheck(a->A->ops->getcolumnvector,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Missing get column operation"); 9959566063dSJacob Faibussowitsch PetscCall((*a->A->ops->getcolumnvector)(a->A,v,col)); 99649a6ff4bSBarry Smith PetscFunctionReturn(0); 99749a6ff4bSBarry Smith } 99849a6ff4bSBarry Smith 999857cbf51SRichard Tran Mills PETSC_INTERN PetscErrorCode MatGetColumnReductions_SeqDense(Mat,PetscInt,PetscReal*); 100052c5f739Sprj- 1001857cbf51SRichard Tran Mills PetscErrorCode MatGetColumnReductions_MPIDense(Mat A,PetscInt type,PetscReal *reductions) 10020716a85fSBarry Smith { 1003a873a8cdSSam Reynolds PetscInt i,m,n; 10040716a85fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*) A->data; 10050716a85fSBarry Smith PetscReal *work; 10060716a85fSBarry Smith 10070716a85fSBarry Smith PetscFunctionBegin; 10089566063dSJacob Faibussowitsch PetscCall(MatGetSize(A,&m,&n)); 10099566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n,&work)); 1010857cbf51SRichard Tran Mills if (type == REDUCTION_MEAN_REALPART) { 10119566063dSJacob Faibussowitsch PetscCall(MatGetColumnReductions_SeqDense(a->A,(PetscInt)REDUCTION_SUM_REALPART,work)); 1012857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_IMAGINARYPART) { 10139566063dSJacob Faibussowitsch PetscCall(MatGetColumnReductions_SeqDense(a->A,(PetscInt)REDUCTION_SUM_IMAGINARYPART,work)); 1014a873a8cdSSam Reynolds } else { 10159566063dSJacob Faibussowitsch PetscCall(MatGetColumnReductions_SeqDense(a->A,type,work)); 1016a873a8cdSSam Reynolds } 1017857cbf51SRichard Tran Mills if (type == NORM_2) { 10180716a85fSBarry Smith for (i=0; i<n; i++) work[i] *= work[i]; 10190716a85fSBarry Smith } 1020857cbf51SRichard Tran Mills if (type == NORM_INFINITY) { 10211c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work,reductions,n,MPIU_REAL,MPIU_MAX,A->hdr.comm)); 10220716a85fSBarry Smith } else { 10231c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work,reductions,n,MPIU_REAL,MPIU_SUM,A->hdr.comm)); 10240716a85fSBarry Smith } 10259566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 1026857cbf51SRichard Tran Mills if (type == NORM_2) { 1027a873a8cdSSam Reynolds for (i=0; i<n; i++) reductions[i] = PetscSqrtReal(reductions[i]); 1028857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 1029a873a8cdSSam Reynolds for (i=0; i<n; i++) reductions[i] /= m; 10300716a85fSBarry Smith } 10310716a85fSBarry Smith PetscFunctionReturn(0); 10320716a85fSBarry Smith } 10330716a85fSBarry Smith 1034637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 10356947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVec_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10366947451fSStefano Zampini { 10376947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10386947451fSStefano Zampini PetscInt lda; 10396947451fSStefano Zampini 10406947451fSStefano Zampini PetscFunctionBegin; 104128b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 104228b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 10436947451fSStefano Zampini if (!a->cvec) { 10449566063dSJacob Faibussowitsch PetscCall(VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 10459566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec)); 10466947451fSStefano Zampini } 10476947451fSStefano Zampini a->vecinuse = col + 1; 10489566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 10499566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArray(a->A,(PetscScalar**)&a->ptrinuse)); 10509566063dSJacob Faibussowitsch PetscCall(VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 10516947451fSStefano Zampini *v = a->cvec; 10526947451fSStefano Zampini PetscFunctionReturn(0); 10536947451fSStefano Zampini } 10546947451fSStefano Zampini 10556947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVec_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10566947451fSStefano Zampini { 10576947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10586947451fSStefano Zampini 10596947451fSStefano Zampini PetscFunctionBegin; 106028b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 106128b400f6SJacob Faibussowitsch PetscCheck(a->cvec,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector"); 10626947451fSStefano Zampini a->vecinuse = 0; 10639566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArray(a->A,(PetscScalar**)&a->ptrinuse)); 10649566063dSJacob Faibussowitsch PetscCall(VecCUDAResetArray(a->cvec)); 10656947451fSStefano Zampini *v = NULL; 10666947451fSStefano Zampini PetscFunctionReturn(0); 10676947451fSStefano Zampini } 10686947451fSStefano Zampini 10696947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecRead_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10706947451fSStefano Zampini { 10716947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10726947451fSStefano Zampini PetscInt lda; 10736947451fSStefano Zampini 10746947451fSStefano Zampini PetscFunctionBegin; 107528b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 107628b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 10776947451fSStefano Zampini if (!a->cvec) { 10789566063dSJacob Faibussowitsch PetscCall(VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 10799566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec)); 10806947451fSStefano Zampini } 10816947451fSStefano Zampini a->vecinuse = col + 1; 10829566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 10839566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArrayRead(a->A,&a->ptrinuse)); 10849566063dSJacob Faibussowitsch PetscCall(VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 10859566063dSJacob Faibussowitsch PetscCall(VecLockReadPush(a->cvec)); 10866947451fSStefano Zampini *v = a->cvec; 10876947451fSStefano Zampini PetscFunctionReturn(0); 10886947451fSStefano Zampini } 10896947451fSStefano Zampini 10906947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecRead_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10916947451fSStefano Zampini { 10926947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10936947451fSStefano Zampini 10946947451fSStefano Zampini PetscFunctionBegin; 109528b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 109628b400f6SJacob Faibussowitsch PetscCheck(a->cvec,PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 10976947451fSStefano Zampini a->vecinuse = 0; 10989566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArrayRead(a->A,&a->ptrinuse)); 10999566063dSJacob Faibussowitsch PetscCall(VecLockReadPop(a->cvec)); 11009566063dSJacob Faibussowitsch PetscCall(VecCUDAResetArray(a->cvec)); 11016947451fSStefano Zampini *v = NULL; 11026947451fSStefano Zampini PetscFunctionReturn(0); 11036947451fSStefano Zampini } 11046947451fSStefano Zampini 11056947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecWrite_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 11066947451fSStefano Zampini { 11076947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 11086947451fSStefano Zampini PetscInt lda; 11096947451fSStefano Zampini 11106947451fSStefano Zampini PetscFunctionBegin; 111128b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 111228b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 11136947451fSStefano Zampini if (!a->cvec) { 11149566063dSJacob Faibussowitsch PetscCall(VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 11159566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec)); 11166947451fSStefano Zampini } 11176947451fSStefano Zampini a->vecinuse = col + 1; 11189566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 11199566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArrayWrite(a->A,(PetscScalar**)&a->ptrinuse)); 11209566063dSJacob Faibussowitsch PetscCall(VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 11216947451fSStefano Zampini *v = a->cvec; 11226947451fSStefano Zampini PetscFunctionReturn(0); 11236947451fSStefano Zampini } 11246947451fSStefano Zampini 11256947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 11266947451fSStefano Zampini { 11276947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 11286947451fSStefano Zampini 11296947451fSStefano Zampini PetscFunctionBegin; 113028b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 113128b400f6SJacob Faibussowitsch PetscCheck(a->cvec,PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 11326947451fSStefano Zampini a->vecinuse = 0; 11339566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArrayWrite(a->A,(PetscScalar**)&a->ptrinuse)); 11349566063dSJacob Faibussowitsch PetscCall(VecCUDAResetArray(a->cvec)); 11356947451fSStefano Zampini *v = NULL; 11366947451fSStefano Zampini PetscFunctionReturn(0); 11376947451fSStefano Zampini } 11386947451fSStefano Zampini 1139637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAPlaceArray_MPIDenseCUDA(Mat A, const PetscScalar *a) 1140637a0070SStefano Zampini { 1141637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1142637a0070SStefano Zampini 1143637a0070SStefano Zampini PetscFunctionBegin; 114428b400f6SJacob Faibussowitsch PetscCheck(!l->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 114528b400f6SJacob Faibussowitsch PetscCheck(!l->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 11469566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAPlaceArray(l->A,a)); 1147637a0070SStefano Zampini PetscFunctionReturn(0); 1148637a0070SStefano Zampini } 1149637a0070SStefano Zampini 1150637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAResetArray_MPIDenseCUDA(Mat A) 1151637a0070SStefano Zampini { 1152637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1153637a0070SStefano Zampini 1154637a0070SStefano Zampini PetscFunctionBegin; 115528b400f6SJacob Faibussowitsch PetscCheck(!l->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 115628b400f6SJacob Faibussowitsch PetscCheck(!l->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 11579566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAResetArray(l->A)); 1158637a0070SStefano Zampini PetscFunctionReturn(0); 1159637a0070SStefano Zampini } 1160637a0070SStefano Zampini 1161d5ea218eSStefano Zampini static PetscErrorCode MatDenseCUDAReplaceArray_MPIDenseCUDA(Mat A, const PetscScalar *a) 1162d5ea218eSStefano Zampini { 1163d5ea218eSStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1164d5ea218eSStefano Zampini 1165d5ea218eSStefano Zampini PetscFunctionBegin; 116628b400f6SJacob Faibussowitsch PetscCheck(!l->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 116728b400f6SJacob Faibussowitsch PetscCheck(!l->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 11689566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAReplaceArray(l->A,a)); 1169d5ea218eSStefano Zampini PetscFunctionReturn(0); 1170d5ea218eSStefano Zampini } 1171d5ea218eSStefano Zampini 1172637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArrayWrite_MPIDenseCUDA(Mat A, PetscScalar **a) 1173637a0070SStefano Zampini { 1174637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1175637a0070SStefano Zampini 1176637a0070SStefano Zampini PetscFunctionBegin; 11779566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArrayWrite(l->A,a)); 1178637a0070SStefano Zampini PetscFunctionReturn(0); 1179637a0070SStefano Zampini } 1180637a0070SStefano Zampini 1181637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArrayWrite_MPIDenseCUDA(Mat A, PetscScalar **a) 1182637a0070SStefano Zampini { 1183637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1184637a0070SStefano Zampini 1185637a0070SStefano Zampini PetscFunctionBegin; 11869566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArrayWrite(l->A,a)); 1187637a0070SStefano Zampini PetscFunctionReturn(0); 1188637a0070SStefano Zampini } 1189637a0070SStefano Zampini 1190637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArrayRead_MPIDenseCUDA(Mat A, const PetscScalar **a) 1191637a0070SStefano Zampini { 1192637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1193637a0070SStefano Zampini 1194637a0070SStefano Zampini PetscFunctionBegin; 11959566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArrayRead(l->A,a)); 1196637a0070SStefano Zampini PetscFunctionReturn(0); 1197637a0070SStefano Zampini } 1198637a0070SStefano Zampini 1199637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArrayRead_MPIDenseCUDA(Mat A, const PetscScalar **a) 1200637a0070SStefano Zampini { 1201637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1202637a0070SStefano Zampini 1203637a0070SStefano Zampini PetscFunctionBegin; 12049566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArrayRead(l->A,a)); 1205637a0070SStefano Zampini PetscFunctionReturn(0); 1206637a0070SStefano Zampini } 1207637a0070SStefano Zampini 1208637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArray_MPIDenseCUDA(Mat A, PetscScalar **a) 1209637a0070SStefano Zampini { 1210637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1211637a0070SStefano Zampini 1212637a0070SStefano Zampini PetscFunctionBegin; 12139566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArray(l->A,a)); 1214637a0070SStefano Zampini PetscFunctionReturn(0); 1215637a0070SStefano Zampini } 1216637a0070SStefano Zampini 1217637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArray_MPIDenseCUDA(Mat A, PetscScalar **a) 1218637a0070SStefano Zampini { 1219637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1220637a0070SStefano Zampini 1221637a0070SStefano Zampini PetscFunctionBegin; 12229566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArray(l->A,a)); 1223637a0070SStefano Zampini PetscFunctionReturn(0); 1224637a0070SStefano Zampini } 1225637a0070SStefano Zampini 12266947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecWrite_MPIDense(Mat,PetscInt,Vec*); 12276947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecRead_MPIDense(Mat,PetscInt,Vec*); 12286947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVec_MPIDense(Mat,PetscInt,Vec*); 12296947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDense(Mat,PetscInt,Vec*); 12306947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecRead_MPIDense(Mat,PetscInt,Vec*); 12316947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVec_MPIDense(Mat,PetscInt,Vec*); 12325ea7661aSPierre Jolivet static PetscErrorCode MatDenseRestoreSubMatrix_MPIDense(Mat,Mat*); 12336947451fSStefano Zampini 1234637a0070SStefano Zampini static PetscErrorCode MatBindToCPU_MPIDenseCUDA(Mat mat,PetscBool bind) 1235637a0070SStefano Zampini { 1236637a0070SStefano Zampini Mat_MPIDense *d = (Mat_MPIDense*)mat->data; 1237637a0070SStefano Zampini 1238637a0070SStefano Zampini PetscFunctionBegin; 123928b400f6SJacob Faibussowitsch PetscCheck(!d->vecinuse,PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 124028b400f6SJacob Faibussowitsch PetscCheck(!d->matinuse,PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1241637a0070SStefano Zampini if (d->A) { 12429566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(d->A,bind)); 1243637a0070SStefano Zampini } 1244637a0070SStefano Zampini mat->boundtocpu = bind; 12456947451fSStefano Zampini if (!bind) { 12466947451fSStefano Zampini PetscBool iscuda; 12476947451fSStefano Zampini 12489566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)d->cvec,VECMPICUDA,&iscuda)); 12496947451fSStefano Zampini if (!iscuda) { 12509566063dSJacob Faibussowitsch PetscCall(VecDestroy(&d->cvec)); 1251616b8fbbSStefano Zampini } 12529566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)d->cmat,MATMPIDENSECUDA,&iscuda)); 1253616b8fbbSStefano Zampini if (!iscuda) { 12549566063dSJacob Faibussowitsch PetscCall(MatDestroy(&d->cmat)); 12556947451fSStefano Zampini } 12569566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDenseCUDA)); 12579566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDenseCUDA)); 12589566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDenseCUDA)); 12599566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDenseCUDA)); 12609566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDenseCUDA)); 12619566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDenseCUDA)); 12626947451fSStefano Zampini } else { 12639566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDense)); 12649566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDense)); 12659566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDense)); 12669566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDense)); 12679566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDense)); 12689566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDense)); 1269616b8fbbSStefano Zampini } 1270616b8fbbSStefano Zampini if (d->cmat) { 12719566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(d->cmat,bind)); 12726947451fSStefano Zampini } 1273637a0070SStefano Zampini PetscFunctionReturn(0); 1274637a0070SStefano Zampini } 1275637a0070SStefano Zampini 1276637a0070SStefano Zampini PetscErrorCode MatMPIDenseCUDASetPreallocation(Mat A, PetscScalar *d_data) 1277637a0070SStefano Zampini { 1278637a0070SStefano Zampini Mat_MPIDense *d = (Mat_MPIDense*)A->data; 1279637a0070SStefano Zampini PetscBool iscuda; 1280637a0070SStefano Zampini 1281637a0070SStefano Zampini PetscFunctionBegin; 1282d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 12839566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A,MATMPIDENSECUDA,&iscuda)); 1284637a0070SStefano Zampini if (!iscuda) PetscFunctionReturn(0); 12859566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->rmap)); 12869566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->cmap)); 1287637a0070SStefano Zampini if (!d->A) { 12889566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF,&d->A)); 12899566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)d->A)); 12909566063dSJacob Faibussowitsch PetscCall(MatSetSizes(d->A,A->rmap->n,A->cmap->N,A->rmap->n,A->cmap->N)); 1291637a0070SStefano Zampini } 12929566063dSJacob Faibussowitsch PetscCall(MatSetType(d->A,MATSEQDENSECUDA)); 12939566063dSJacob Faibussowitsch PetscCall(MatSeqDenseCUDASetPreallocation(d->A,d_data)); 1294637a0070SStefano Zampini A->preallocated = PETSC_TRUE; 12956f08ad05SPierre Jolivet A->assembled = PETSC_TRUE; 1296637a0070SStefano Zampini PetscFunctionReturn(0); 1297637a0070SStefano Zampini } 1298637a0070SStefano Zampini #endif 1299637a0070SStefano Zampini 130073a71a0fSBarry Smith static PetscErrorCode MatSetRandom_MPIDense(Mat x,PetscRandom rctx) 130173a71a0fSBarry Smith { 130273a71a0fSBarry Smith Mat_MPIDense *d = (Mat_MPIDense*)x->data; 130373a71a0fSBarry Smith 130473a71a0fSBarry Smith PetscFunctionBegin; 13059566063dSJacob Faibussowitsch PetscCall(MatSetRandom(d->A,rctx)); 130673a71a0fSBarry Smith PetscFunctionReturn(0); 130773a71a0fSBarry Smith } 130873a71a0fSBarry Smith 13093b49f96aSBarry Smith static PetscErrorCode MatMissingDiagonal_MPIDense(Mat A,PetscBool *missing,PetscInt *d) 13103b49f96aSBarry Smith { 13113b49f96aSBarry Smith PetscFunctionBegin; 13123b49f96aSBarry Smith *missing = PETSC_FALSE; 13133b49f96aSBarry Smith PetscFunctionReturn(0); 13143b49f96aSBarry Smith } 13153b49f96aSBarry Smith 13164222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat,Mat,PetscReal,Mat); 1317cc48ffa7SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat,Mat,Mat); 13186718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat,Mat,PetscReal,Mat); 1319a1f9a5e6SStefano Zampini static PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat,Mat,Mat); 13206718818eSStefano Zampini static PetscErrorCode MatEqual_MPIDense(Mat,Mat,PetscBool*); 13216718818eSStefano Zampini static PetscErrorCode MatLoad_MPIDense(Mat,PetscViewer); 1322cc48ffa7SToby Isaac 13238965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/ 132409dc0095SBarry Smith static struct _MatOps MatOps_Values = { MatSetValues_MPIDense, 132509dc0095SBarry Smith MatGetRow_MPIDense, 132609dc0095SBarry Smith MatRestoreRow_MPIDense, 132709dc0095SBarry Smith MatMult_MPIDense, 132897304618SKris Buschelman /* 4*/ MatMultAdd_MPIDense, 13297c922b88SBarry Smith MatMultTranspose_MPIDense, 13307c922b88SBarry Smith MatMultTransposeAdd_MPIDense, 1331f4259b30SLisandro Dalcin NULL, 1332f4259b30SLisandro Dalcin NULL, 1333f4259b30SLisandro Dalcin NULL, 1334f4259b30SLisandro Dalcin /* 10*/ NULL, 1335f4259b30SLisandro Dalcin NULL, 1336f4259b30SLisandro Dalcin NULL, 1337f4259b30SLisandro Dalcin NULL, 133809dc0095SBarry Smith MatTranspose_MPIDense, 133997304618SKris Buschelman /* 15*/ MatGetInfo_MPIDense, 13406e4ee0c6SHong Zhang MatEqual_MPIDense, 134109dc0095SBarry Smith MatGetDiagonal_MPIDense, 13425b2fa520SLois Curfman McInnes MatDiagonalScale_MPIDense, 134309dc0095SBarry Smith MatNorm_MPIDense, 134497304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPIDense, 134509dc0095SBarry Smith MatAssemblyEnd_MPIDense, 134609dc0095SBarry Smith MatSetOption_MPIDense, 134709dc0095SBarry Smith MatZeroEntries_MPIDense, 1348d519adbfSMatthew Knepley /* 24*/ MatZeroRows_MPIDense, 1349f4259b30SLisandro Dalcin NULL, 1350f4259b30SLisandro Dalcin NULL, 1351f4259b30SLisandro Dalcin NULL, 1352f4259b30SLisandro Dalcin NULL, 13534994cf47SJed Brown /* 29*/ MatSetUp_MPIDense, 1354f4259b30SLisandro Dalcin NULL, 1355f4259b30SLisandro Dalcin NULL, 1356c56a70eeSBarry Smith MatGetDiagonalBlock_MPIDense, 1357f4259b30SLisandro Dalcin NULL, 1358d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPIDense, 1359f4259b30SLisandro Dalcin NULL, 1360f4259b30SLisandro Dalcin NULL, 1361f4259b30SLisandro Dalcin NULL, 1362f4259b30SLisandro Dalcin NULL, 1363d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPIDense, 13647dae84e0SHong Zhang MatCreateSubMatrices_MPIDense, 1365f4259b30SLisandro Dalcin NULL, 136609dc0095SBarry Smith MatGetValues_MPIDense, 1367a76f77c3SStefano Zampini MatCopy_MPIDense, 1368f4259b30SLisandro Dalcin /* 44*/ NULL, 136909dc0095SBarry Smith MatScale_MPIDense, 1370*2f605a99SJose E. Roman MatShift_MPIDense, 1371f4259b30SLisandro Dalcin NULL, 1372f4259b30SLisandro Dalcin NULL, 137373a71a0fSBarry Smith /* 49*/ MatSetRandom_MPIDense, 1374f4259b30SLisandro Dalcin NULL, 1375f4259b30SLisandro Dalcin NULL, 1376f4259b30SLisandro Dalcin NULL, 1377f4259b30SLisandro Dalcin NULL, 1378f4259b30SLisandro Dalcin /* 54*/ NULL, 1379f4259b30SLisandro Dalcin NULL, 1380f4259b30SLisandro Dalcin NULL, 1381f4259b30SLisandro Dalcin NULL, 1382f4259b30SLisandro Dalcin NULL, 13837dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPIDense, 1384b9b97703SBarry Smith MatDestroy_MPIDense, 1385b9b97703SBarry Smith MatView_MPIDense, 1386f4259b30SLisandro Dalcin NULL, 1387f4259b30SLisandro Dalcin NULL, 1388f4259b30SLisandro Dalcin /* 64*/ NULL, 1389f4259b30SLisandro Dalcin NULL, 1390f4259b30SLisandro Dalcin NULL, 1391f4259b30SLisandro Dalcin NULL, 1392f4259b30SLisandro Dalcin NULL, 1393f4259b30SLisandro Dalcin /* 69*/ NULL, 1394f4259b30SLisandro Dalcin NULL, 1395f4259b30SLisandro Dalcin NULL, 1396f4259b30SLisandro Dalcin NULL, 1397f4259b30SLisandro Dalcin NULL, 1398f4259b30SLisandro Dalcin /* 74*/ NULL, 1399f4259b30SLisandro Dalcin NULL, 1400f4259b30SLisandro Dalcin NULL, 1401f4259b30SLisandro Dalcin NULL, 1402f4259b30SLisandro Dalcin NULL, 1403f4259b30SLisandro Dalcin /* 79*/ NULL, 1404f4259b30SLisandro Dalcin NULL, 1405f4259b30SLisandro Dalcin NULL, 1406f4259b30SLisandro Dalcin NULL, 14075bba2384SShri Abhyankar /* 83*/ MatLoad_MPIDense, 1408f4259b30SLisandro Dalcin NULL, 1409f4259b30SLisandro Dalcin NULL, 1410f4259b30SLisandro Dalcin NULL, 1411f4259b30SLisandro Dalcin NULL, 1412f4259b30SLisandro Dalcin NULL, 1413f4259b30SLisandro Dalcin /* 89*/ NULL, 1414f4259b30SLisandro Dalcin NULL, 1415f4259b30SLisandro Dalcin NULL, 1416f4259b30SLisandro Dalcin NULL, 1417f4259b30SLisandro Dalcin NULL, 1418f4259b30SLisandro Dalcin /* 94*/ NULL, 1419f4259b30SLisandro Dalcin NULL, 14206718818eSStefano Zampini MatMatTransposeMultSymbolic_MPIDense_MPIDense, 1421cc48ffa7SToby Isaac MatMatTransposeMultNumeric_MPIDense_MPIDense, 1422f4259b30SLisandro Dalcin NULL, 14234222ddf1SHong Zhang /* 99*/ MatProductSetFromOptions_MPIDense, 1424f4259b30SLisandro Dalcin NULL, 1425f4259b30SLisandro Dalcin NULL, 1426ba337c44SJed Brown MatConjugate_MPIDense, 1427f4259b30SLisandro Dalcin NULL, 1428f4259b30SLisandro Dalcin /*104*/ NULL, 1429ba337c44SJed Brown MatRealPart_MPIDense, 1430ba337c44SJed Brown MatImaginaryPart_MPIDense, 1431f4259b30SLisandro Dalcin NULL, 1432f4259b30SLisandro Dalcin NULL, 1433f4259b30SLisandro Dalcin /*109*/ NULL, 1434f4259b30SLisandro Dalcin NULL, 1435f4259b30SLisandro Dalcin NULL, 143649a6ff4bSBarry Smith MatGetColumnVector_MPIDense, 14373b49f96aSBarry Smith MatMissingDiagonal_MPIDense, 1438f4259b30SLisandro Dalcin /*114*/ NULL, 1439f4259b30SLisandro Dalcin NULL, 1440f4259b30SLisandro Dalcin NULL, 1441f4259b30SLisandro Dalcin NULL, 1442f4259b30SLisandro Dalcin NULL, 1443f4259b30SLisandro Dalcin /*119*/ NULL, 1444f4259b30SLisandro Dalcin NULL, 1445f4259b30SLisandro Dalcin NULL, 1446f4259b30SLisandro Dalcin NULL, 1447f4259b30SLisandro Dalcin NULL, 1448f4259b30SLisandro Dalcin /*124*/ NULL, 1449a873a8cdSSam Reynolds MatGetColumnReductions_MPIDense, 1450f4259b30SLisandro Dalcin NULL, 1451f4259b30SLisandro Dalcin NULL, 1452f4259b30SLisandro Dalcin NULL, 1453f4259b30SLisandro Dalcin /*129*/ NULL, 1454f4259b30SLisandro Dalcin NULL, 14556718818eSStefano Zampini MatTransposeMatMultSymbolic_MPIDense_MPIDense, 1456cb20be35SHong Zhang MatTransposeMatMultNumeric_MPIDense_MPIDense, 1457f4259b30SLisandro Dalcin NULL, 1458f4259b30SLisandro Dalcin /*134*/ NULL, 1459f4259b30SLisandro Dalcin NULL, 1460f4259b30SLisandro Dalcin NULL, 1461f4259b30SLisandro Dalcin NULL, 1462f4259b30SLisandro Dalcin NULL, 1463f4259b30SLisandro Dalcin /*139*/ NULL, 1464f4259b30SLisandro Dalcin NULL, 1465f4259b30SLisandro Dalcin NULL, 1466f4259b30SLisandro Dalcin NULL, 1467f4259b30SLisandro Dalcin NULL, 14684222ddf1SHong Zhang MatCreateMPIMatConcatenateSeqMat_MPIDense, 1469f4259b30SLisandro Dalcin /*145*/ NULL, 1470f4259b30SLisandro Dalcin NULL, 1471f4259b30SLisandro Dalcin NULL 1472ba337c44SJed Brown }; 14738965ea79SLois Curfman McInnes 14747087cfbeSBarry Smith PetscErrorCode MatMPIDenseSetPreallocation_MPIDense(Mat mat,PetscScalar *data) 1475a23d5eceSKris Buschelman { 1476637a0070SStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)mat->data; 1477637a0070SStefano Zampini PetscBool iscuda; 1478a23d5eceSKris Buschelman 1479a23d5eceSKris Buschelman PetscFunctionBegin; 148028b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 14819566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 14829566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 1483637a0070SStefano Zampini if (!a->A) { 14849566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF,&a->A)); 14859566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A)); 14869566063dSJacob Faibussowitsch PetscCall(MatSetSizes(a->A,mat->rmap->n,mat->cmap->N,mat->rmap->n,mat->cmap->N)); 1487637a0070SStefano Zampini } 14889566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)mat,MATMPIDENSECUDA,&iscuda)); 14899566063dSJacob Faibussowitsch PetscCall(MatSetType(a->A,iscuda ? MATSEQDENSECUDA : MATSEQDENSE)); 14909566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(a->A,data)); 1491637a0070SStefano Zampini mat->preallocated = PETSC_TRUE; 14926f08ad05SPierre Jolivet mat->assembled = PETSC_TRUE; 1493a23d5eceSKris Buschelman PetscFunctionReturn(0); 1494a23d5eceSKris Buschelman } 1495a23d5eceSKris Buschelman 14964e29119aSPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIDense(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 14974e29119aSPierre Jolivet { 14984e29119aSPierre Jolivet Mat B,C; 14994e29119aSPierre Jolivet 15004e29119aSPierre Jolivet PetscFunctionBegin; 15019566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(A,MAT_INITIAL_MATRIX,&C)); 15029566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqAIJ_SeqDense(C,MATSEQDENSE,MAT_INITIAL_MATRIX,&B)); 15039566063dSJacob Faibussowitsch PetscCall(MatDestroy(&C)); 15044e29119aSPierre Jolivet if (reuse == MAT_REUSE_MATRIX) { 15054e29119aSPierre Jolivet C = *newmat; 15064e29119aSPierre Jolivet } else C = NULL; 15079566063dSJacob Faibussowitsch PetscCall(MatCreateMPIMatConcatenateSeqMat(PetscObjectComm((PetscObject)A),B,A->cmap->n,!C?MAT_INITIAL_MATRIX:MAT_REUSE_MATRIX,&C)); 15089566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 15094e29119aSPierre Jolivet if (reuse == MAT_INPLACE_MATRIX) { 15109566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A,&C)); 15114e29119aSPierre Jolivet } else if (reuse == MAT_INITIAL_MATRIX) *newmat = C; 15124e29119aSPierre Jolivet PetscFunctionReturn(0); 15134e29119aSPierre Jolivet } 15144e29119aSPierre Jolivet 15154e29119aSPierre Jolivet PetscErrorCode MatConvert_MPIDense_MPIAIJ(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 15164e29119aSPierre Jolivet { 15174e29119aSPierre Jolivet Mat B,C; 15184e29119aSPierre Jolivet 15194e29119aSPierre Jolivet PetscFunctionBegin; 15209566063dSJacob Faibussowitsch PetscCall(MatDenseGetLocalMatrix(A,&C)); 15219566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqDense_SeqAIJ(C,MATSEQAIJ,MAT_INITIAL_MATRIX,&B)); 15224e29119aSPierre Jolivet if (reuse == MAT_REUSE_MATRIX) { 15234e29119aSPierre Jolivet C = *newmat; 15244e29119aSPierre Jolivet } else C = NULL; 15259566063dSJacob Faibussowitsch PetscCall(MatCreateMPIMatConcatenateSeqMat(PetscObjectComm((PetscObject)A),B,A->cmap->n,!C?MAT_INITIAL_MATRIX:MAT_REUSE_MATRIX,&C)); 15269566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 15274e29119aSPierre Jolivet if (reuse == MAT_INPLACE_MATRIX) { 15289566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A,&C)); 15294e29119aSPierre Jolivet } else if (reuse == MAT_INITIAL_MATRIX) *newmat = C; 15304e29119aSPierre Jolivet PetscFunctionReturn(0); 15314e29119aSPierre Jolivet } 15324e29119aSPierre Jolivet 153365b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 1534cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIDense_Elemental(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 15358baccfbdSHong Zhang { 15368ea901baSHong Zhang Mat mat_elemental; 153732d7a744SHong Zhang PetscScalar *v; 153832d7a744SHong Zhang PetscInt m=A->rmap->n,N=A->cmap->N,rstart=A->rmap->rstart,i,*rows,*cols; 15398ea901baSHong Zhang 15408baccfbdSHong Zhang PetscFunctionBegin; 1541378336b6SHong Zhang if (reuse == MAT_REUSE_MATRIX) { 1542378336b6SHong Zhang mat_elemental = *newmat; 15439566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(*newmat)); 1544378336b6SHong Zhang } else { 15459566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental)); 15469566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat_elemental,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N)); 15479566063dSJacob Faibussowitsch PetscCall(MatSetType(mat_elemental,MATELEMENTAL)); 15489566063dSJacob Faibussowitsch PetscCall(MatSetUp(mat_elemental)); 15499566063dSJacob Faibussowitsch PetscCall(MatSetOption(mat_elemental,MAT_ROW_ORIENTED,PETSC_FALSE)); 1550378336b6SHong Zhang } 1551378336b6SHong Zhang 15529566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m,&rows,N,&cols)); 155332d7a744SHong Zhang for (i=0; i<N; i++) cols[i] = i; 155432d7a744SHong Zhang for (i=0; i<m; i++) rows[i] = rstart + i; 15558ea901baSHong Zhang 1556637a0070SStefano Zampini /* PETSc-Elemental interface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */ 15579566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(A,&v)); 15589566063dSJacob Faibussowitsch PetscCall(MatSetValues(mat_elemental,m,rows,N,cols,v,ADD_VALUES)); 15599566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY)); 15609566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY)); 15619566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(A,&v)); 15629566063dSJacob Faibussowitsch PetscCall(PetscFree2(rows,cols)); 15638ea901baSHong Zhang 1564511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 15659566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A,&mat_elemental)); 15668ea901baSHong Zhang } else { 15678ea901baSHong Zhang *newmat = mat_elemental; 15688ea901baSHong Zhang } 15698baccfbdSHong Zhang PetscFunctionReturn(0); 15708baccfbdSHong Zhang } 157165b80a83SHong Zhang #endif 15728baccfbdSHong Zhang 1573af53bab2SHong Zhang static PetscErrorCode MatDenseGetColumn_MPIDense(Mat A,PetscInt col,PetscScalar **vals) 157486aefd0dSHong Zhang { 157586aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 157686aefd0dSHong Zhang 157786aefd0dSHong Zhang PetscFunctionBegin; 15789566063dSJacob Faibussowitsch PetscCall(MatDenseGetColumn(mat->A,col,vals)); 157986aefd0dSHong Zhang PetscFunctionReturn(0); 158086aefd0dSHong Zhang } 158186aefd0dSHong Zhang 1582af53bab2SHong Zhang static PetscErrorCode MatDenseRestoreColumn_MPIDense(Mat A,PetscScalar **vals) 158386aefd0dSHong Zhang { 158486aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 158586aefd0dSHong Zhang 158686aefd0dSHong Zhang PetscFunctionBegin; 15879566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreColumn(mat->A,vals)); 158886aefd0dSHong Zhang PetscFunctionReturn(0); 158986aefd0dSHong Zhang } 159086aefd0dSHong Zhang 159194e2cb23SJakub Kruzik PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIDense(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 159294e2cb23SJakub Kruzik { 159394e2cb23SJakub Kruzik Mat_MPIDense *mat; 159494e2cb23SJakub Kruzik PetscInt m,nloc,N; 159594e2cb23SJakub Kruzik 159694e2cb23SJakub Kruzik PetscFunctionBegin; 15979566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat,&m,&N)); 15989566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(inmat,NULL,&nloc)); 159994e2cb23SJakub Kruzik if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 160094e2cb23SJakub Kruzik PetscInt sum; 160194e2cb23SJakub Kruzik 160294e2cb23SJakub Kruzik if (n == PETSC_DECIDE) { 16039566063dSJacob Faibussowitsch PetscCall(PetscSplitOwnership(comm,&n,&N)); 160494e2cb23SJakub Kruzik } 160594e2cb23SJakub Kruzik /* Check sum(n) = N */ 16061c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm)); 160708401ef6SPierre Jolivet PetscCheck(sum == N,PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns %" PetscInt_FMT " != global columns %" PetscInt_FMT,sum,N); 160894e2cb23SJakub Kruzik 16099566063dSJacob Faibussowitsch PetscCall(MatCreateDense(comm,m,n,PETSC_DETERMINE,N,NULL,outmat)); 16109566063dSJacob Faibussowitsch PetscCall(MatSetOption(*outmat,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE)); 161194e2cb23SJakub Kruzik } 161294e2cb23SJakub Kruzik 161394e2cb23SJakub Kruzik /* numeric phase */ 161494e2cb23SJakub Kruzik mat = (Mat_MPIDense*)(*outmat)->data; 16159566063dSJacob Faibussowitsch PetscCall(MatCopy(inmat,mat->A,SAME_NONZERO_PATTERN)); 161694e2cb23SJakub Kruzik PetscFunctionReturn(0); 161794e2cb23SJakub Kruzik } 161894e2cb23SJakub Kruzik 1619637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1620637a0070SStefano Zampini PetscErrorCode MatConvert_MPIDenseCUDA_MPIDense(Mat M,MatType type,MatReuse reuse,Mat *newmat) 1621637a0070SStefano Zampini { 1622637a0070SStefano Zampini Mat B; 1623637a0070SStefano Zampini Mat_MPIDense *m; 1624637a0070SStefano Zampini 1625637a0070SStefano Zampini PetscFunctionBegin; 1626637a0070SStefano Zampini if (reuse == MAT_INITIAL_MATRIX) { 16279566063dSJacob Faibussowitsch PetscCall(MatDuplicate(M,MAT_COPY_VALUES,newmat)); 1628637a0070SStefano Zampini } else if (reuse == MAT_REUSE_MATRIX) { 16299566063dSJacob Faibussowitsch PetscCall(MatCopy(M,*newmat,SAME_NONZERO_PATTERN)); 1630637a0070SStefano Zampini } 1631637a0070SStefano Zampini 1632637a0070SStefano Zampini B = *newmat; 16339566063dSJacob Faibussowitsch PetscCall(MatBindToCPU_MPIDenseCUDA(B,PETSC_TRUE)); 16349566063dSJacob Faibussowitsch PetscCall(PetscFree(B->defaultvectype)); 16359566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(VECSTANDARD,&B->defaultvectype)); 16369566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B,MATMPIDENSE)); 16379566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpidensecuda_mpidense_C",NULL)); 16389566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaij_mpidensecuda_C",NULL)); 16399566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaijcusparse_mpidensecuda_C",NULL)); 16409566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaij_C",NULL)); 16419566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaijcusparse_C",NULL)); 16429566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArray_C",NULL)); 16439566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayRead_C",NULL)); 16449566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayWrite_C",NULL)); 16459566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArray_C",NULL)); 16469566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayRead_C",NULL)); 16479566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayWrite_C",NULL)); 16489566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAPlaceArray_C",NULL)); 16499566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAResetArray_C",NULL)); 16509566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAReplaceArray_C",NULL)); 1651637a0070SStefano Zampini m = (Mat_MPIDense*)(B)->data; 1652637a0070SStefano Zampini if (m->A) { 16539566063dSJacob Faibussowitsch PetscCall(MatConvert(m->A,MATSEQDENSE,MAT_INPLACE_MATRIX,&m->A)); 1654637a0070SStefano Zampini } 1655637a0070SStefano Zampini B->ops->bindtocpu = NULL; 1656637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_CPU; 1657637a0070SStefano Zampini PetscFunctionReturn(0); 1658637a0070SStefano Zampini } 1659637a0070SStefano Zampini 1660637a0070SStefano Zampini PetscErrorCode MatConvert_MPIDense_MPIDenseCUDA(Mat M,MatType type,MatReuse reuse,Mat *newmat) 1661637a0070SStefano Zampini { 1662637a0070SStefano Zampini Mat B; 1663637a0070SStefano Zampini Mat_MPIDense *m; 1664637a0070SStefano Zampini 1665637a0070SStefano Zampini PetscFunctionBegin; 1666637a0070SStefano Zampini if (reuse == MAT_INITIAL_MATRIX) { 16679566063dSJacob Faibussowitsch PetscCall(MatDuplicate(M,MAT_COPY_VALUES,newmat)); 1668637a0070SStefano Zampini } else if (reuse == MAT_REUSE_MATRIX) { 16699566063dSJacob Faibussowitsch PetscCall(MatCopy(M,*newmat,SAME_NONZERO_PATTERN)); 1670637a0070SStefano Zampini } 1671637a0070SStefano Zampini 1672637a0070SStefano Zampini B = *newmat; 16739566063dSJacob Faibussowitsch PetscCall(PetscFree(B->defaultvectype)); 16749566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(VECCUDA,&B->defaultvectype)); 16759566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B,MATMPIDENSECUDA)); 16769566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpidensecuda_mpidense_C", MatConvert_MPIDenseCUDA_MPIDense)); 16779566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaij_mpidensecuda_C", MatProductSetFromOptions_MPIAIJ_MPIDense)); 16789566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaijcusparse_mpidensecuda_C",MatProductSetFromOptions_MPIAIJ_MPIDense)); 16799566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaij_C", MatProductSetFromOptions_MPIDense_MPIAIJ)); 16809566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaijcusparse_C",MatProductSetFromOptions_MPIDense_MPIAIJ)); 16819566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArray_C", MatDenseCUDAGetArray_MPIDenseCUDA)); 16829566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayRead_C", MatDenseCUDAGetArrayRead_MPIDenseCUDA)); 16839566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayWrite_C", MatDenseCUDAGetArrayWrite_MPIDenseCUDA)); 16849566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArray_C", MatDenseCUDARestoreArray_MPIDenseCUDA)); 16859566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayRead_C", MatDenseCUDARestoreArrayRead_MPIDenseCUDA)); 16869566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayWrite_C", MatDenseCUDARestoreArrayWrite_MPIDenseCUDA)); 16879566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAPlaceArray_C", MatDenseCUDAPlaceArray_MPIDenseCUDA)); 16889566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAResetArray_C", MatDenseCUDAResetArray_MPIDenseCUDA)); 16899566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAReplaceArray_C", MatDenseCUDAReplaceArray_MPIDenseCUDA)); 1690f5ff9c66SStefano Zampini m = (Mat_MPIDense*)(B->data); 1691637a0070SStefano Zampini if (m->A) { 16929566063dSJacob Faibussowitsch PetscCall(MatConvert(m->A,MATSEQDENSECUDA,MAT_INPLACE_MATRIX,&m->A)); 1693637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_BOTH; 1694637a0070SStefano Zampini } else { 1695637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_UNALLOCATED; 1696637a0070SStefano Zampini } 16979566063dSJacob Faibussowitsch PetscCall(MatBindToCPU_MPIDenseCUDA(B,PETSC_FALSE)); 1698637a0070SStefano Zampini 1699637a0070SStefano Zampini B->ops->bindtocpu = MatBindToCPU_MPIDenseCUDA; 1700637a0070SStefano Zampini PetscFunctionReturn(0); 1701637a0070SStefano Zampini } 1702637a0070SStefano Zampini #endif 1703637a0070SStefano Zampini 17046947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVec_MPIDense(Mat A,PetscInt col,Vec *v) 17056947451fSStefano Zampini { 17066947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17076947451fSStefano Zampini PetscInt lda; 17086947451fSStefano Zampini 17096947451fSStefano Zampini PetscFunctionBegin; 171028b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 171128b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 17126947451fSStefano Zampini if (!a->cvec) { 17139566063dSJacob Faibussowitsch PetscCall(VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 17146947451fSStefano Zampini } 17156947451fSStefano Zampini a->vecinuse = col + 1; 17169566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 17179566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(a->A,(PetscScalar**)&a->ptrinuse)); 17189566063dSJacob Faibussowitsch PetscCall(VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 17196947451fSStefano Zampini *v = a->cvec; 17206947451fSStefano Zampini PetscFunctionReturn(0); 17216947451fSStefano Zampini } 17226947451fSStefano Zampini 17236947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVec_MPIDense(Mat A,PetscInt col,Vec *v) 17246947451fSStefano Zampini { 17256947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17266947451fSStefano Zampini 17276947451fSStefano Zampini PetscFunctionBegin; 172828b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 172928b400f6SJacob Faibussowitsch PetscCheck(a->cvec,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector"); 17306947451fSStefano Zampini a->vecinuse = 0; 17319566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(a->A,(PetscScalar**)&a->ptrinuse)); 17329566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 17336947451fSStefano Zampini *v = NULL; 17346947451fSStefano Zampini PetscFunctionReturn(0); 17356947451fSStefano Zampini } 17366947451fSStefano Zampini 17376947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecRead_MPIDense(Mat A,PetscInt col,Vec *v) 17386947451fSStefano Zampini { 17396947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17406947451fSStefano Zampini PetscInt lda; 17416947451fSStefano Zampini 17426947451fSStefano Zampini PetscFunctionBegin; 174328b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 174428b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 17456947451fSStefano Zampini if (!a->cvec) { 17469566063dSJacob Faibussowitsch PetscCall(VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 17476947451fSStefano Zampini } 17486947451fSStefano Zampini a->vecinuse = col + 1; 17499566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 17509566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A,&a->ptrinuse)); 17519566063dSJacob Faibussowitsch PetscCall(VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 17529566063dSJacob Faibussowitsch PetscCall(VecLockReadPush(a->cvec)); 17536947451fSStefano Zampini *v = a->cvec; 17546947451fSStefano Zampini PetscFunctionReturn(0); 17556947451fSStefano Zampini } 17566947451fSStefano Zampini 17576947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecRead_MPIDense(Mat A,PetscInt col,Vec *v) 17586947451fSStefano Zampini { 17596947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17606947451fSStefano Zampini 17616947451fSStefano Zampini PetscFunctionBegin; 17625f80ce2aSJacob Faibussowitsch PetscCheck(a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 17635f80ce2aSJacob Faibussowitsch PetscCheck(a->cvec,PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 17646947451fSStefano Zampini a->vecinuse = 0; 17659566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A,&a->ptrinuse)); 17669566063dSJacob Faibussowitsch PetscCall(VecLockReadPop(a->cvec)); 17679566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 17686947451fSStefano Zampini *v = NULL; 17696947451fSStefano Zampini PetscFunctionReturn(0); 17706947451fSStefano Zampini } 17716947451fSStefano Zampini 17726947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecWrite_MPIDense(Mat A,PetscInt col,Vec *v) 17736947451fSStefano Zampini { 17746947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17756947451fSStefano Zampini PetscInt lda; 17766947451fSStefano Zampini 17776947451fSStefano Zampini PetscFunctionBegin; 17785f80ce2aSJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 17795f80ce2aSJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 17806947451fSStefano Zampini if (!a->cvec) { 17819566063dSJacob Faibussowitsch PetscCall(VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 17826947451fSStefano Zampini } 17836947451fSStefano Zampini a->vecinuse = col + 1; 17849566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 17859566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(a->A,(PetscScalar**)&a->ptrinuse)); 17869566063dSJacob Faibussowitsch PetscCall(VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 17876947451fSStefano Zampini *v = a->cvec; 17886947451fSStefano Zampini PetscFunctionReturn(0); 17896947451fSStefano Zampini } 17906947451fSStefano Zampini 17916947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDense(Mat A,PetscInt col,Vec *v) 17926947451fSStefano Zampini { 17936947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17946947451fSStefano Zampini 17956947451fSStefano Zampini PetscFunctionBegin; 17965f80ce2aSJacob Faibussowitsch PetscCheck(a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 17975f80ce2aSJacob Faibussowitsch PetscCheck(a->cvec,PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 17986947451fSStefano Zampini a->vecinuse = 0; 17999566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(a->A,(PetscScalar**)&a->ptrinuse)); 18009566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 18016947451fSStefano Zampini *v = NULL; 18026947451fSStefano Zampini PetscFunctionReturn(0); 18036947451fSStefano Zampini } 18046947451fSStefano Zampini 18055ea7661aSPierre Jolivet PetscErrorCode MatDenseGetSubMatrix_MPIDense(Mat A,PetscInt cbegin,PetscInt cend,Mat *v) 18065ea7661aSPierre Jolivet { 18075ea7661aSPierre Jolivet Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1808616b8fbbSStefano Zampini Mat_MPIDense *c; 1809616b8fbbSStefano Zampini MPI_Comm comm; 18105ea7661aSPierre Jolivet 18115ea7661aSPierre Jolivet PetscFunctionBegin; 18129566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A,&comm)); 18135f80ce2aSJacob Faibussowitsch PetscCheck(!a->vecinuse,comm,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 18145f80ce2aSJacob Faibussowitsch PetscCheck(!a->matinuse,comm,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 18155ea7661aSPierre Jolivet if (!a->cmat) { 18169566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,&a->cmat)); 18179566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)a->cmat)); 18189566063dSJacob Faibussowitsch PetscCall(MatSetType(a->cmat,((PetscObject)A)->type_name)); 18199566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->rmap,&a->cmat->rmap)); 18209566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(a->cmat->cmap,cend-cbegin)); 18219566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(a->cmat->cmap)); 1822616b8fbbSStefano Zampini } else if (cend-cbegin != a->cmat->cmap->N) { 18239566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&a->cmat->cmap)); 18249566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm,&a->cmat->cmap)); 18259566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(a->cmat->cmap,cend-cbegin)); 18269566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(a->cmat->cmap)); 18275ea7661aSPierre Jolivet } 1828616b8fbbSStefano Zampini c = (Mat_MPIDense*)a->cmat->data; 18295f80ce2aSJacob Faibussowitsch PetscCheck(!c->A,comm,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 18309566063dSJacob Faibussowitsch PetscCall(MatDenseGetSubMatrix(a->A,cbegin,cend,&c->A)); 1831616b8fbbSStefano Zampini a->cmat->preallocated = PETSC_TRUE; 1832616b8fbbSStefano Zampini a->cmat->assembled = PETSC_TRUE; 18335ea7661aSPierre Jolivet a->matinuse = cbegin + 1; 18345ea7661aSPierre Jolivet *v = a->cmat; 18355ea7661aSPierre Jolivet PetscFunctionReturn(0); 18365ea7661aSPierre Jolivet } 18375ea7661aSPierre Jolivet 18385ea7661aSPierre Jolivet PetscErrorCode MatDenseRestoreSubMatrix_MPIDense(Mat A,Mat *v) 18395ea7661aSPierre Jolivet { 18405ea7661aSPierre Jolivet Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1841616b8fbbSStefano Zampini Mat_MPIDense *c; 18425ea7661aSPierre Jolivet 18435ea7661aSPierre Jolivet PetscFunctionBegin; 18445f80ce2aSJacob Faibussowitsch PetscCheck(a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetSubMatrix() first"); 18455f80ce2aSJacob Faibussowitsch PetscCheck(a->cmat,PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal matrix"); 18465f80ce2aSJacob Faibussowitsch PetscCheck(*v == a->cmat,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Not the matrix obtained from MatDenseGetSubMatrix()"); 18475ea7661aSPierre Jolivet a->matinuse = 0; 1848616b8fbbSStefano Zampini c = (Mat_MPIDense*)a->cmat->data; 18499566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreSubMatrix(a->A,&c->A)); 18505ea7661aSPierre Jolivet *v = NULL; 18515ea7661aSPierre Jolivet PetscFunctionReturn(0); 18525ea7661aSPierre Jolivet } 18535ea7661aSPierre Jolivet 1854002bc6daSRichard Tran Mills /*MC 1855002bc6daSRichard Tran Mills MATMPIDENSE - MATMPIDENSE = "mpidense" - A matrix type to be used for distributed dense matrices. 1856002bc6daSRichard Tran Mills 1857002bc6daSRichard Tran Mills Options Database Keys: 1858002bc6daSRichard Tran Mills . -mat_type mpidense - sets the matrix type to "mpidense" during a call to MatSetFromOptions() 1859002bc6daSRichard Tran Mills 1860002bc6daSRichard Tran Mills Level: beginner 1861002bc6daSRichard Tran Mills 1862db781477SPatrick Sanan .seealso: `MatCreateDense()` 1863002bc6daSRichard Tran Mills 1864002bc6daSRichard Tran Mills M*/ 18658cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIDense(Mat mat) 1866273d9f13SBarry Smith { 1867273d9f13SBarry Smith Mat_MPIDense *a; 1868273d9f13SBarry Smith 1869273d9f13SBarry Smith PetscFunctionBegin; 18709566063dSJacob Faibussowitsch PetscCall(PetscNewLog(mat,&a)); 1871b0a32e0cSBarry Smith mat->data = (void*)a; 18729566063dSJacob Faibussowitsch PetscCall(PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps))); 1873273d9f13SBarry Smith 1874273d9f13SBarry Smith mat->insertmode = NOT_SET_VALUES; 1875273d9f13SBarry Smith 1876273d9f13SBarry Smith /* build cache for off array entries formed */ 1877273d9f13SBarry Smith a->donotstash = PETSC_FALSE; 18782205254eSKarl Rupp 18799566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)mat),1,&mat->stash)); 1880273d9f13SBarry Smith 1881273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 1882f4259b30SLisandro Dalcin a->lvec = NULL; 1883f4259b30SLisandro Dalcin a->Mvctx = NULL; 1884273d9f13SBarry Smith a->roworiented = PETSC_TRUE; 1885273d9f13SBarry Smith 18869566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",MatDenseGetLDA_MPIDense)); 18879566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseSetLDA_C",MatDenseSetLDA_MPIDense)); 18889566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",MatDenseGetArray_MPIDense)); 18899566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",MatDenseRestoreArray_MPIDense)); 18909566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",MatDenseGetArrayRead_MPIDense)); 18919566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",MatDenseRestoreArrayRead_MPIDense)); 18929566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayWrite_C",MatDenseGetArrayWrite_MPIDense)); 18939566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayWrite_C",MatDenseRestoreArrayWrite_MPIDense)); 18949566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",MatDensePlaceArray_MPIDense)); 18959566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",MatDenseResetArray_MPIDense)); 18969566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseReplaceArray_C",MatDenseReplaceArray_MPIDense)); 18979566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDense)); 18989566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDense)); 18999566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDense)); 19009566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDense)); 19019566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDense)); 19029566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDense)); 19039566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetSubMatrix_C",MatDenseGetSubMatrix_MPIDense)); 19049566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreSubMatrix_C",MatDenseRestoreSubMatrix_MPIDense)); 19059566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpiaij_mpidense_C",MatConvert_MPIAIJ_MPIDense)); 19069566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_mpiaij_C",MatConvert_MPIDense_MPIAIJ)); 19078baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 19089566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",MatConvert_MPIDense_Elemental)); 19098baccfbdSHong Zhang #endif 1910d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 19119566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_scalapack_C",MatConvert_Dense_ScaLAPACK)); 1912d24d4204SJose E. Roman #endif 1913637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 19149566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_mpidensecuda_C",MatConvert_MPIDense_MPIDenseCUDA)); 1915637a0070SStefano Zampini #endif 19169566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",MatMPIDenseSetPreallocation_MPIDense)); 19179566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaij_mpidense_C",MatProductSetFromOptions_MPIAIJ_MPIDense)); 19189566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaij_C",MatProductSetFromOptions_MPIDense_MPIAIJ)); 19196718818eSStefano Zampini #if defined(PETSC_HAVE_CUDA) 19209566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaijcusparse_mpidense_C",MatProductSetFromOptions_MPIAIJ_MPIDense)); 19219566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaijcusparse_C",MatProductSetFromOptions_MPIDense_MPIAIJ)); 19226718818eSStefano Zampini #endif 19238949adfdSHong Zhang 19249566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",MatDenseGetColumn_MPIDense)); 19259566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",MatDenseRestoreColumn_MPIDense)); 19269566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)mat,MATMPIDENSE)); 1927273d9f13SBarry Smith PetscFunctionReturn(0); 1928273d9f13SBarry Smith } 1929273d9f13SBarry Smith 1930209238afSKris Buschelman /*MC 1931637a0070SStefano Zampini MATMPIDENSECUDA - MATMPIDENSECUDA = "mpidensecuda" - A matrix type to be used for distributed dense matrices on GPUs. 1932637a0070SStefano Zampini 1933637a0070SStefano Zampini Options Database Keys: 1934637a0070SStefano Zampini . -mat_type mpidensecuda - sets the matrix type to "mpidensecuda" during a call to MatSetFromOptions() 1935637a0070SStefano Zampini 1936637a0070SStefano Zampini Level: beginner 1937637a0070SStefano Zampini 1938637a0070SStefano Zampini .seealso: 1939637a0070SStefano Zampini 1940637a0070SStefano Zampini M*/ 1941637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1942a4af0ceeSJacob Faibussowitsch #include <petsc/private/deviceimpl.h> 1943637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreate_MPIDenseCUDA(Mat B) 1944637a0070SStefano Zampini { 1945637a0070SStefano Zampini PetscFunctionBegin; 19469566063dSJacob Faibussowitsch PetscCall(PetscDeviceInitialize(PETSC_DEVICE_CUDA)); 19479566063dSJacob Faibussowitsch PetscCall(MatCreate_MPIDense(B)); 19489566063dSJacob Faibussowitsch PetscCall(MatConvert_MPIDense_MPIDenseCUDA(B,MATMPIDENSECUDA,MAT_INPLACE_MATRIX,&B)); 1949637a0070SStefano Zampini PetscFunctionReturn(0); 1950637a0070SStefano Zampini } 1951637a0070SStefano Zampini #endif 1952637a0070SStefano Zampini 1953637a0070SStefano Zampini /*MC 1954002d173eSKris Buschelman MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices. 1955209238afSKris Buschelman 1956209238afSKris Buschelman This matrix type is identical to MATSEQDENSE when constructed with a single process communicator, 1957209238afSKris Buschelman and MATMPIDENSE otherwise. 1958209238afSKris Buschelman 1959209238afSKris Buschelman Options Database Keys: 1960209238afSKris Buschelman . -mat_type dense - sets the matrix type to "dense" during a call to MatSetFromOptions() 1961209238afSKris Buschelman 1962209238afSKris Buschelman Level: beginner 1963209238afSKris Buschelman 1964db781477SPatrick Sanan .seealso: `MATSEQDENSE,MATMPIDENSE,MATDENSECUDA` 19656947451fSStefano Zampini M*/ 19666947451fSStefano Zampini 19676947451fSStefano Zampini /*MC 19686947451fSStefano Zampini MATDENSECUDA - MATDENSECUDA = "densecuda" - A matrix type to be used for dense matrices on GPUs. 19696947451fSStefano Zampini 19706947451fSStefano Zampini This matrix type is identical to MATSEQDENSECUDA when constructed with a single process communicator, 19716947451fSStefano Zampini and MATMPIDENSECUDA otherwise. 19726947451fSStefano Zampini 19736947451fSStefano Zampini Options Database Keys: 19746947451fSStefano Zampini . -mat_type densecuda - sets the matrix type to "densecuda" during a call to MatSetFromOptions() 19756947451fSStefano Zampini 19766947451fSStefano Zampini Level: beginner 19776947451fSStefano Zampini 1978db781477SPatrick Sanan .seealso: `MATSEQDENSECUDA,MATMPIDENSECUDA,MATDENSE` 1979209238afSKris Buschelman M*/ 1980209238afSKris Buschelman 1981273d9f13SBarry Smith /*@C 1982273d9f13SBarry Smith MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries 1983273d9f13SBarry Smith 19848f490ea3SStefano Zampini Collective 1985273d9f13SBarry Smith 1986273d9f13SBarry Smith Input Parameters: 19871c4f3114SJed Brown . B - the matrix 19880298fd71SBarry Smith - data - optional location of matrix data. Set data=NULL for PETSc 1989273d9f13SBarry Smith to control all matrix memory allocation. 1990273d9f13SBarry Smith 1991273d9f13SBarry Smith Notes: 1992273d9f13SBarry Smith The dense format is fully compatible with standard Fortran 77 1993273d9f13SBarry Smith storage by columns. 1994273d9f13SBarry Smith 1995273d9f13SBarry Smith The data input variable is intended primarily for Fortran programmers 1996273d9f13SBarry Smith who wish to allocate their own matrix memory space. Most users should 19970298fd71SBarry Smith set data=NULL. 1998273d9f13SBarry Smith 1999273d9f13SBarry Smith Level: intermediate 2000273d9f13SBarry Smith 2001db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqDense()`, `MatSetValues()` 2002273d9f13SBarry Smith @*/ 20031c4f3114SJed Brown PetscErrorCode MatMPIDenseSetPreallocation(Mat B,PetscScalar *data) 2004273d9f13SBarry Smith { 2005273d9f13SBarry Smith PetscFunctionBegin; 2006d5ea218eSStefano Zampini PetscValidHeaderSpecific(B,MAT_CLASSID,1); 2007cac4c232SBarry Smith PetscTryMethod(B,"MatMPIDenseSetPreallocation_C",(Mat,PetscScalar*),(B,data)); 2008273d9f13SBarry Smith PetscFunctionReturn(0); 2009273d9f13SBarry Smith } 2010273d9f13SBarry Smith 2011d3042a70SBarry Smith /*@ 2012637a0070SStefano Zampini MatDensePlaceArray - Allows one to replace the array in a dense matrix with an 2013d3042a70SBarry Smith array provided by the user. This is useful to avoid copying an array 2014d3042a70SBarry Smith into a matrix 2015d3042a70SBarry Smith 2016d3042a70SBarry Smith Not Collective 2017d3042a70SBarry Smith 2018d3042a70SBarry Smith Input Parameters: 2019d3042a70SBarry Smith + mat - the matrix 2020d3042a70SBarry Smith - array - the array in column major order 2021d3042a70SBarry Smith 2022d3042a70SBarry Smith Notes: 2023d3042a70SBarry Smith You can return to the original array with a call to MatDenseResetArray(). The user is responsible for freeing this array; it will not be 2024d3042a70SBarry Smith freed when the matrix is destroyed. 2025d3042a70SBarry Smith 2026d3042a70SBarry Smith Level: developer 2027d3042a70SBarry Smith 2028db781477SPatrick Sanan .seealso: `MatDenseGetArray()`, `MatDenseResetArray()`, `VecPlaceArray()`, `VecGetArray()`, `VecRestoreArray()`, `VecReplaceArray()`, `VecResetArray()` 2029d3042a70SBarry Smith 2030d3042a70SBarry Smith @*/ 2031637a0070SStefano Zampini PetscErrorCode MatDensePlaceArray(Mat mat,const PetscScalar *array) 2032d3042a70SBarry Smith { 2033d3042a70SBarry Smith PetscFunctionBegin; 2034d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2035cac4c232SBarry Smith PetscUseMethod(mat,"MatDensePlaceArray_C",(Mat,const PetscScalar*),(mat,array)); 20369566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2037637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 2038637a0070SStefano Zampini mat->offloadmask = PETSC_OFFLOAD_CPU; 2039637a0070SStefano Zampini #endif 2040d3042a70SBarry Smith PetscFunctionReturn(0); 2041d3042a70SBarry Smith } 2042d3042a70SBarry Smith 2043d3042a70SBarry Smith /*@ 2044d3042a70SBarry Smith MatDenseResetArray - Resets the matrix array to that it previously had before the call to MatDensePlaceArray() 2045d3042a70SBarry Smith 2046d3042a70SBarry Smith Not Collective 2047d3042a70SBarry Smith 2048d3042a70SBarry Smith Input Parameters: 2049d3042a70SBarry Smith . mat - the matrix 2050d3042a70SBarry Smith 2051d3042a70SBarry Smith Notes: 2052d3042a70SBarry Smith You can only call this after a call to MatDensePlaceArray() 2053d3042a70SBarry Smith 2054d3042a70SBarry Smith Level: developer 2055d3042a70SBarry Smith 2056db781477SPatrick Sanan .seealso: `MatDenseGetArray()`, `MatDensePlaceArray()`, `VecPlaceArray()`, `VecGetArray()`, `VecRestoreArray()`, `VecReplaceArray()`, `VecResetArray()` 2057d3042a70SBarry Smith 2058d3042a70SBarry Smith @*/ 2059d3042a70SBarry Smith PetscErrorCode MatDenseResetArray(Mat mat) 2060d3042a70SBarry Smith { 2061d3042a70SBarry Smith PetscFunctionBegin; 2062d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2063cac4c232SBarry Smith PetscUseMethod(mat,"MatDenseResetArray_C",(Mat),(mat)); 20649566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2065d3042a70SBarry Smith PetscFunctionReturn(0); 2066d3042a70SBarry Smith } 2067d3042a70SBarry Smith 2068d5ea218eSStefano Zampini /*@ 2069d5ea218eSStefano Zampini MatDenseReplaceArray - Allows one to replace the array in a dense matrix with an 2070d5ea218eSStefano Zampini array provided by the user. This is useful to avoid copying an array 2071d5ea218eSStefano Zampini into a matrix 2072d5ea218eSStefano Zampini 2073d5ea218eSStefano Zampini Not Collective 2074d5ea218eSStefano Zampini 2075d5ea218eSStefano Zampini Input Parameters: 2076d5ea218eSStefano Zampini + mat - the matrix 2077d5ea218eSStefano Zampini - array - the array in column major order 2078d5ea218eSStefano Zampini 2079d5ea218eSStefano Zampini Notes: 2080d5ea218eSStefano Zampini The memory passed in MUST be obtained with PetscMalloc() and CANNOT be 2081d5ea218eSStefano Zampini freed by the user. It will be freed when the matrix is destroyed. 2082d5ea218eSStefano Zampini 2083d5ea218eSStefano Zampini Level: developer 2084d5ea218eSStefano Zampini 2085db781477SPatrick Sanan .seealso: `MatDenseGetArray()`, `VecReplaceArray()` 2086d5ea218eSStefano Zampini @*/ 2087d5ea218eSStefano Zampini PetscErrorCode MatDenseReplaceArray(Mat mat,const PetscScalar *array) 2088d5ea218eSStefano Zampini { 2089d5ea218eSStefano Zampini PetscFunctionBegin; 2090d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2091cac4c232SBarry Smith PetscUseMethod(mat,"MatDenseReplaceArray_C",(Mat,const PetscScalar*),(mat,array)); 20929566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2093d5ea218eSStefano Zampini #if defined(PETSC_HAVE_CUDA) 2094d5ea218eSStefano Zampini mat->offloadmask = PETSC_OFFLOAD_CPU; 2095d5ea218eSStefano Zampini #endif 2096d5ea218eSStefano Zampini PetscFunctionReturn(0); 2097d5ea218eSStefano Zampini } 2098d5ea218eSStefano Zampini 2099637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 21008965ea79SLois Curfman McInnes /*@C 2101637a0070SStefano Zampini MatDenseCUDAPlaceArray - Allows one to replace the GPU array in a dense matrix with an 2102637a0070SStefano Zampini array provided by the user. This is useful to avoid copying an array 2103637a0070SStefano Zampini into a matrix 2104637a0070SStefano Zampini 2105637a0070SStefano Zampini Not Collective 2106637a0070SStefano Zampini 2107637a0070SStefano Zampini Input Parameters: 2108637a0070SStefano Zampini + mat - the matrix 2109637a0070SStefano Zampini - array - the array in column major order 2110637a0070SStefano Zampini 2111637a0070SStefano Zampini Notes: 2112637a0070SStefano Zampini You can return to the original array with a call to MatDenseCUDAResetArray(). The user is responsible for freeing this array; it will not be 2113637a0070SStefano Zampini freed when the matrix is destroyed. The array must have been allocated with cudaMalloc(). 2114637a0070SStefano Zampini 2115637a0070SStefano Zampini Level: developer 2116637a0070SStefano Zampini 2117db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDAResetArray()` 2118637a0070SStefano Zampini @*/ 2119637a0070SStefano Zampini PetscErrorCode MatDenseCUDAPlaceArray(Mat mat,const PetscScalar *array) 2120637a0070SStefano Zampini { 2121637a0070SStefano Zampini PetscFunctionBegin; 2122d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2123cac4c232SBarry Smith PetscUseMethod(mat,"MatDenseCUDAPlaceArray_C",(Mat,const PetscScalar*),(mat,array)); 21249566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2125637a0070SStefano Zampini mat->offloadmask = PETSC_OFFLOAD_GPU; 2126637a0070SStefano Zampini PetscFunctionReturn(0); 2127637a0070SStefano Zampini } 2128637a0070SStefano Zampini 2129637a0070SStefano Zampini /*@C 2130637a0070SStefano Zampini MatDenseCUDAResetArray - Resets the matrix array to that it previously had before the call to MatDenseCUDAPlaceArray() 2131637a0070SStefano Zampini 2132637a0070SStefano Zampini Not Collective 2133637a0070SStefano Zampini 2134637a0070SStefano Zampini Input Parameters: 2135637a0070SStefano Zampini . mat - the matrix 2136637a0070SStefano Zampini 2137637a0070SStefano Zampini Notes: 2138637a0070SStefano Zampini You can only call this after a call to MatDenseCUDAPlaceArray() 2139637a0070SStefano Zampini 2140637a0070SStefano Zampini Level: developer 2141637a0070SStefano Zampini 2142db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDAPlaceArray()` 2143637a0070SStefano Zampini 2144637a0070SStefano Zampini @*/ 2145637a0070SStefano Zampini PetscErrorCode MatDenseCUDAResetArray(Mat mat) 2146637a0070SStefano Zampini { 2147637a0070SStefano Zampini PetscFunctionBegin; 2148d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2149cac4c232SBarry Smith PetscUseMethod(mat,"MatDenseCUDAResetArray_C",(Mat),(mat)); 21509566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2151637a0070SStefano Zampini PetscFunctionReturn(0); 2152637a0070SStefano Zampini } 2153637a0070SStefano Zampini 2154637a0070SStefano Zampini /*@C 2155d5ea218eSStefano Zampini MatDenseCUDAReplaceArray - Allows one to replace the GPU array in a dense matrix with an 2156d5ea218eSStefano Zampini array provided by the user. This is useful to avoid copying an array 2157d5ea218eSStefano Zampini into a matrix 2158d5ea218eSStefano Zampini 2159d5ea218eSStefano Zampini Not Collective 2160d5ea218eSStefano Zampini 2161d5ea218eSStefano Zampini Input Parameters: 2162d5ea218eSStefano Zampini + mat - the matrix 2163d5ea218eSStefano Zampini - array - the array in column major order 2164d5ea218eSStefano Zampini 2165d5ea218eSStefano Zampini Notes: 2166d5ea218eSStefano Zampini This permanently replaces the GPU array and frees the memory associated with the old GPU array. 2167d5ea218eSStefano Zampini The memory passed in CANNOT be freed by the user. It will be freed 2168d5ea218eSStefano Zampini when the matrix is destroyed. The array should respect the matrix leading dimension. 2169d5ea218eSStefano Zampini 2170d5ea218eSStefano Zampini Level: developer 2171d5ea218eSStefano Zampini 2172db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDAPlaceArray()`, `MatDenseCUDAResetArray()` 2173d5ea218eSStefano Zampini @*/ 2174d5ea218eSStefano Zampini PetscErrorCode MatDenseCUDAReplaceArray(Mat mat,const PetscScalar *array) 2175d5ea218eSStefano Zampini { 2176d5ea218eSStefano Zampini PetscFunctionBegin; 2177d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2178cac4c232SBarry Smith PetscUseMethod(mat,"MatDenseCUDAReplaceArray_C",(Mat,const PetscScalar*),(mat,array)); 21799566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2180d5ea218eSStefano Zampini mat->offloadmask = PETSC_OFFLOAD_GPU; 2181d5ea218eSStefano Zampini PetscFunctionReturn(0); 2182d5ea218eSStefano Zampini } 2183d5ea218eSStefano Zampini 2184d5ea218eSStefano Zampini /*@C 2185637a0070SStefano Zampini MatDenseCUDAGetArrayWrite - Provides write access to the CUDA buffer inside a dense matrix. 2186637a0070SStefano Zampini 2187637a0070SStefano Zampini Not Collective 2188637a0070SStefano Zampini 2189637a0070SStefano Zampini Input Parameters: 2190637a0070SStefano Zampini . A - the matrix 2191637a0070SStefano Zampini 2192637a0070SStefano Zampini Output Parameters 2193637a0070SStefano Zampini . array - the GPU array in column major order 2194637a0070SStefano Zampini 2195637a0070SStefano Zampini Notes: 2196637a0070SStefano Zampini The data on the GPU may not be updated due to operations done on the CPU. If you need updated data, use MatDenseCUDAGetArray(). The array must be restored with MatDenseCUDARestoreArrayWrite() when no longer needed. 2197637a0070SStefano Zampini 2198637a0070SStefano Zampini Level: developer 2199637a0070SStefano Zampini 2200db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDARestoreArray()`, `MatDenseCUDARestoreArrayWrite()`, `MatDenseCUDAGetArrayRead()`, `MatDenseCUDARestoreArrayRead()` 2201637a0070SStefano Zampini @*/ 2202637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArrayWrite(Mat A, PetscScalar **a) 2203637a0070SStefano Zampini { 2204637a0070SStefano Zampini PetscFunctionBegin; 2205d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2206cac4c232SBarry Smith PetscUseMethod(A,"MatDenseCUDAGetArrayWrite_C",(Mat,PetscScalar**),(A,a)); 22079566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)A)); 2208637a0070SStefano Zampini PetscFunctionReturn(0); 2209637a0070SStefano Zampini } 2210637a0070SStefano Zampini 2211637a0070SStefano Zampini /*@C 2212637a0070SStefano Zampini MatDenseCUDARestoreArrayWrite - Restore write access to the CUDA buffer inside a dense matrix previously obtained with MatDenseCUDAGetArrayWrite(). 2213637a0070SStefano Zampini 2214637a0070SStefano Zampini Not Collective 2215637a0070SStefano Zampini 2216637a0070SStefano Zampini Input Parameters: 2217637a0070SStefano Zampini + A - the matrix 2218637a0070SStefano Zampini - array - the GPU array in column major order 2219637a0070SStefano Zampini 2220637a0070SStefano Zampini Notes: 2221637a0070SStefano Zampini 2222637a0070SStefano Zampini Level: developer 2223637a0070SStefano Zampini 2224db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDARestoreArray()`, `MatDenseCUDAGetArrayWrite()`, `MatDenseCUDARestoreArrayRead()`, `MatDenseCUDAGetArrayRead()` 2225637a0070SStefano Zampini @*/ 2226637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArrayWrite(Mat A, PetscScalar **a) 2227637a0070SStefano Zampini { 2228637a0070SStefano Zampini PetscFunctionBegin; 2229d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2230cac4c232SBarry Smith PetscUseMethod(A,"MatDenseCUDARestoreArrayWrite_C",(Mat,PetscScalar**),(A,a)); 22319566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)A)); 2232637a0070SStefano Zampini A->offloadmask = PETSC_OFFLOAD_GPU; 2233637a0070SStefano Zampini PetscFunctionReturn(0); 2234637a0070SStefano Zampini } 2235637a0070SStefano Zampini 2236637a0070SStefano Zampini /*@C 2237637a0070SStefano Zampini MatDenseCUDAGetArrayRead - Provides read-only access to the CUDA buffer inside a dense matrix. The array must be restored with MatDenseCUDARestoreArrayRead() when no longer needed. 2238637a0070SStefano Zampini 2239637a0070SStefano Zampini Not Collective 2240637a0070SStefano Zampini 2241637a0070SStefano Zampini Input Parameters: 2242637a0070SStefano Zampini . A - the matrix 2243637a0070SStefano Zampini 2244637a0070SStefano Zampini Output Parameters 2245637a0070SStefano Zampini . array - the GPU array in column major order 2246637a0070SStefano Zampini 2247637a0070SStefano Zampini Notes: 2248637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). 2249637a0070SStefano Zampini 2250637a0070SStefano Zampini Level: developer 2251637a0070SStefano Zampini 2252db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDARestoreArray()`, `MatDenseCUDARestoreArrayWrite()`, `MatDenseCUDAGetArrayWrite()`, `MatDenseCUDARestoreArrayRead()` 2253637a0070SStefano Zampini @*/ 2254637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArrayRead(Mat A, const PetscScalar **a) 2255637a0070SStefano Zampini { 2256637a0070SStefano Zampini PetscFunctionBegin; 2257d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2258cac4c232SBarry Smith PetscUseMethod(A,"MatDenseCUDAGetArrayRead_C",(Mat,const PetscScalar**),(A,a)); 2259637a0070SStefano Zampini PetscFunctionReturn(0); 2260637a0070SStefano Zampini } 2261637a0070SStefano Zampini 2262637a0070SStefano Zampini /*@C 2263637a0070SStefano Zampini MatDenseCUDARestoreArrayRead - Restore read-only access to the CUDA buffer inside a dense matrix previously obtained with a call to MatDenseCUDAGetArrayRead(). 2264637a0070SStefano Zampini 2265637a0070SStefano Zampini Not Collective 2266637a0070SStefano Zampini 2267637a0070SStefano Zampini Input Parameters: 2268637a0070SStefano Zampini + A - the matrix 2269637a0070SStefano Zampini - array - the GPU array in column major order 2270637a0070SStefano Zampini 2271637a0070SStefano Zampini Notes: 2272637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). 2273637a0070SStefano Zampini 2274637a0070SStefano Zampini Level: developer 2275637a0070SStefano Zampini 2276db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDARestoreArray()`, `MatDenseCUDARestoreArrayWrite()`, `MatDenseCUDAGetArrayWrite()`, `MatDenseCUDAGetArrayRead()` 2277637a0070SStefano Zampini @*/ 2278637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArrayRead(Mat A, const PetscScalar **a) 2279637a0070SStefano Zampini { 2280637a0070SStefano Zampini PetscFunctionBegin; 2281cac4c232SBarry Smith PetscUseMethod(A,"MatDenseCUDARestoreArrayRead_C",(Mat,const PetscScalar**),(A,a)); 2282637a0070SStefano Zampini PetscFunctionReturn(0); 2283637a0070SStefano Zampini } 2284637a0070SStefano Zampini 2285637a0070SStefano Zampini /*@C 2286637a0070SStefano Zampini MatDenseCUDAGetArray - Provides access to the CUDA buffer inside a dense matrix. The array must be restored with MatDenseCUDARestoreArray() when no longer needed. 2287637a0070SStefano Zampini 2288637a0070SStefano Zampini Not Collective 2289637a0070SStefano Zampini 2290637a0070SStefano Zampini Input Parameters: 2291637a0070SStefano Zampini . A - the matrix 2292637a0070SStefano Zampini 2293637a0070SStefano Zampini Output Parameters 2294637a0070SStefano Zampini . array - the GPU array in column major order 2295637a0070SStefano Zampini 2296637a0070SStefano Zampini Notes: 2297637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). For read-only access, use MatDenseCUDAGetArrayRead(). 2298637a0070SStefano Zampini 2299637a0070SStefano Zampini Level: developer 2300637a0070SStefano Zampini 2301db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArrayRead()`, `MatDenseCUDARestoreArray()`, `MatDenseCUDARestoreArrayWrite()`, `MatDenseCUDAGetArrayWrite()`, `MatDenseCUDARestoreArrayRead()` 2302637a0070SStefano Zampini @*/ 2303637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArray(Mat A, PetscScalar **a) 2304637a0070SStefano Zampini { 2305637a0070SStefano Zampini PetscFunctionBegin; 2306d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2307cac4c232SBarry Smith PetscUseMethod(A,"MatDenseCUDAGetArray_C",(Mat,PetscScalar**),(A,a)); 23089566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)A)); 2309637a0070SStefano Zampini PetscFunctionReturn(0); 2310637a0070SStefano Zampini } 2311637a0070SStefano Zampini 2312637a0070SStefano Zampini /*@C 2313637a0070SStefano Zampini MatDenseCUDARestoreArray - Restore access to the CUDA buffer inside a dense matrix previously obtained with MatDenseCUDAGetArray(). 2314637a0070SStefano Zampini 2315637a0070SStefano Zampini Not Collective 2316637a0070SStefano Zampini 2317637a0070SStefano Zampini Input Parameters: 2318637a0070SStefano Zampini + A - the matrix 2319637a0070SStefano Zampini - array - the GPU array in column major order 2320637a0070SStefano Zampini 2321637a0070SStefano Zampini Notes: 2322637a0070SStefano Zampini 2323637a0070SStefano Zampini Level: developer 2324637a0070SStefano Zampini 2325db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDARestoreArrayWrite()`, `MatDenseCUDAGetArrayWrite()`, `MatDenseCUDARestoreArrayRead()`, `MatDenseCUDAGetArrayRead()` 2326637a0070SStefano Zampini @*/ 2327637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArray(Mat A, PetscScalar **a) 2328637a0070SStefano Zampini { 2329637a0070SStefano Zampini PetscFunctionBegin; 2330d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2331cac4c232SBarry Smith PetscUseMethod(A,"MatDenseCUDARestoreArray_C",(Mat,PetscScalar**),(A,a)); 23329566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)A)); 2333637a0070SStefano Zampini A->offloadmask = PETSC_OFFLOAD_GPU; 2334637a0070SStefano Zampini PetscFunctionReturn(0); 2335637a0070SStefano Zampini } 2336637a0070SStefano Zampini #endif 2337637a0070SStefano Zampini 2338637a0070SStefano Zampini /*@C 2339637a0070SStefano Zampini MatCreateDense - Creates a matrix in dense format. 23408965ea79SLois Curfman McInnes 2341d083f849SBarry Smith Collective 2342db81eaa0SLois Curfman McInnes 23438965ea79SLois Curfman McInnes Input Parameters: 2344db81eaa0SLois Curfman McInnes + comm - MPI communicator 23458965ea79SLois Curfman McInnes . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2346db81eaa0SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 23478965ea79SLois Curfman McInnes . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 2348db81eaa0SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 23496cfe35ddSJose E. Roman - data - optional location of matrix data. Set data=NULL (PETSC_NULL_SCALAR for Fortran users) for PETSc 2350dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 23518965ea79SLois Curfman McInnes 23528965ea79SLois Curfman McInnes Output Parameter: 2353477f1c0bSLois Curfman McInnes . A - the matrix 23548965ea79SLois Curfman McInnes 2355b259b22eSLois Curfman McInnes Notes: 235639ddd567SLois Curfman McInnes The dense format is fully compatible with standard Fortran 77 235739ddd567SLois Curfman McInnes storage by columns. 2358002bc6daSRichard Tran Mills Note that, although local portions of the matrix are stored in column-major 2359002bc6daSRichard Tran Mills order, the matrix is partitioned across MPI ranks by row. 23608965ea79SLois Curfman McInnes 236118f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 236218f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 23636cfe35ddSJose E. Roman set data=NULL (PETSC_NULL_SCALAR for Fortran users). 236418f449edSLois Curfman McInnes 23658965ea79SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 23668965ea79SLois Curfman McInnes (possibly both). 23678965ea79SLois Curfman McInnes 2368027ccd11SLois Curfman McInnes Level: intermediate 2369027ccd11SLois Curfman McInnes 2370db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqDense()`, `MatSetValues()` 23718965ea79SLois Curfman McInnes @*/ 237269b1f4b7SBarry Smith PetscErrorCode MatCreateDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 23738965ea79SLois Curfman McInnes { 23743a40ed3dSBarry Smith PetscFunctionBegin; 23759566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,A)); 23769566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A,m,n,M,N)); 23776f08ad05SPierre Jolivet PetscCall(MatSetType(*A,MATDENSE)); 23789566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(*A,data)); 23796f08ad05SPierre Jolivet PetscCall(MatMPIDenseSetPreallocation(*A,data)); 23803a40ed3dSBarry Smith PetscFunctionReturn(0); 23818965ea79SLois Curfman McInnes } 23828965ea79SLois Curfman McInnes 2383637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 2384637a0070SStefano Zampini /*@C 2385637a0070SStefano Zampini MatCreateDenseCUDA - Creates a matrix in dense format using CUDA. 2386637a0070SStefano Zampini 2387637a0070SStefano Zampini Collective 2388637a0070SStefano Zampini 2389637a0070SStefano Zampini Input Parameters: 2390637a0070SStefano Zampini + comm - MPI communicator 2391637a0070SStefano Zampini . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2392637a0070SStefano Zampini . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 2393637a0070SStefano Zampini . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 2394637a0070SStefano Zampini . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 2395637a0070SStefano Zampini - data - optional location of GPU matrix data. Set data=NULL for PETSc 2396637a0070SStefano Zampini to control matrix memory allocation. 2397637a0070SStefano Zampini 2398637a0070SStefano Zampini Output Parameter: 2399637a0070SStefano Zampini . A - the matrix 2400637a0070SStefano Zampini 2401637a0070SStefano Zampini Notes: 2402637a0070SStefano Zampini 2403637a0070SStefano Zampini Level: intermediate 2404637a0070SStefano Zampini 2405db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateDense()` 2406637a0070SStefano Zampini @*/ 2407637a0070SStefano Zampini PetscErrorCode MatCreateDenseCUDA(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 2408637a0070SStefano Zampini { 2409637a0070SStefano Zampini PetscFunctionBegin; 24109566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,A)); 2411637a0070SStefano Zampini PetscValidLogicalCollectiveBool(*A,!!data,6); 24129566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A,m,n,M,N)); 24136f08ad05SPierre Jolivet PetscCall(MatSetType(*A,MATDENSECUDA)); 24149566063dSJacob Faibussowitsch PetscCall(MatSeqDenseCUDASetPreallocation(*A,data)); 24156f08ad05SPierre Jolivet PetscCall(MatMPIDenseCUDASetPreallocation(*A,data)); 2416637a0070SStefano Zampini PetscFunctionReturn(0); 2417637a0070SStefano Zampini } 2418637a0070SStefano Zampini #endif 2419637a0070SStefano Zampini 24206849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat) 24218965ea79SLois Curfman McInnes { 24228965ea79SLois Curfman McInnes Mat mat; 24233501a2bdSLois Curfman McInnes Mat_MPIDense *a,*oldmat = (Mat_MPIDense*)A->data; 24248965ea79SLois Curfman McInnes 24253a40ed3dSBarry Smith PetscFunctionBegin; 2426f4259b30SLisandro Dalcin *newmat = NULL; 24279566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&mat)); 24289566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N)); 24299566063dSJacob Faibussowitsch PetscCall(MatSetType(mat,((PetscObject)A)->type_name)); 2430834f8fabSBarry Smith a = (Mat_MPIDense*)mat->data; 24315aa7edbeSHong Zhang 2432d5f3da31SBarry Smith mat->factortype = A->factortype; 2433c456f294SBarry Smith mat->assembled = PETSC_TRUE; 2434273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 24358965ea79SLois Curfman McInnes 2436e0fa3b82SLois Curfman McInnes mat->insertmode = NOT_SET_VALUES; 24373782ba37SSatish Balay a->donotstash = oldmat->donotstash; 2438e04c1aa4SHong Zhang 24399566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->rmap,&mat->rmap)); 24409566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->cmap,&mat->cmap)); 24418965ea79SLois Curfman McInnes 24429566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A,cpvalues,&a->A)); 24439566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A)); 244401b82886SBarry Smith 24458965ea79SLois Curfman McInnes *newmat = mat; 24463a40ed3dSBarry Smith PetscFunctionReturn(0); 24478965ea79SLois Curfman McInnes } 24488965ea79SLois Curfman McInnes 2449eb91f321SVaclav Hapla PetscErrorCode MatLoad_MPIDense(Mat newMat, PetscViewer viewer) 2450eb91f321SVaclav Hapla { 245187d5ce66SSatish Balay PetscBool isbinary; 245287d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 245387d5ce66SSatish Balay PetscBool ishdf5; 245487d5ce66SSatish Balay #endif 2455eb91f321SVaclav Hapla 2456eb91f321SVaclav Hapla PetscFunctionBegin; 2457eb91f321SVaclav Hapla PetscValidHeaderSpecific(newMat,MAT_CLASSID,1); 2458eb91f321SVaclav Hapla PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2); 2459eb91f321SVaclav Hapla /* force binary viewer to load .info file if it has not yet done so */ 24609566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 24619566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary)); 246287d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 24639566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERHDF5, &ishdf5)); 246487d5ce66SSatish Balay #endif 2465eb91f321SVaclav Hapla if (isbinary) { 24669566063dSJacob Faibussowitsch PetscCall(MatLoad_Dense_Binary(newMat,viewer)); 2467eb91f321SVaclav Hapla #if defined(PETSC_HAVE_HDF5) 246887d5ce66SSatish Balay } else if (ishdf5) { 24699566063dSJacob Faibussowitsch PetscCall(MatLoad_Dense_HDF5(newMat,viewer)); 2470eb91f321SVaclav Hapla #endif 247198921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)newMat),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)newMat)->type_name); 2472eb91f321SVaclav Hapla PetscFunctionReturn(0); 2473eb91f321SVaclav Hapla } 2474eb91f321SVaclav Hapla 24756718818eSStefano Zampini static PetscErrorCode MatEqual_MPIDense(Mat A,Mat B,PetscBool *flag) 24766e4ee0c6SHong Zhang { 24776e4ee0c6SHong Zhang Mat_MPIDense *matB = (Mat_MPIDense*)B->data,*matA = (Mat_MPIDense*)A->data; 24786e4ee0c6SHong Zhang Mat a,b; 247990ace30eSBarry Smith 24806e4ee0c6SHong Zhang PetscFunctionBegin; 24816e4ee0c6SHong Zhang a = matA->A; 24826e4ee0c6SHong Zhang b = matB->A; 24832cf15c64SPierre Jolivet PetscCall(MatEqual(a,b,flag)); 24842cf15c64SPierre Jolivet PetscCall(MPIU_Allreduce(MPI_IN_PLACE,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A))); 24856e4ee0c6SHong Zhang PetscFunctionReturn(0); 24866e4ee0c6SHong Zhang } 248790ace30eSBarry Smith 24886718818eSStefano Zampini PetscErrorCode MatDestroy_MatTransMatMult_MPIDense_MPIDense(void *data) 2489baa3c1c6SHong Zhang { 24906718818eSStefano Zampini Mat_TransMatMultDense *atb = (Mat_TransMatMultDense *)data; 2491baa3c1c6SHong Zhang 2492baa3c1c6SHong Zhang PetscFunctionBegin; 24939566063dSJacob Faibussowitsch PetscCall(PetscFree2(atb->sendbuf,atb->recvcounts)); 24949566063dSJacob Faibussowitsch PetscCall(MatDestroy(&atb->atb)); 24959566063dSJacob Faibussowitsch PetscCall(PetscFree(atb)); 2496baa3c1c6SHong Zhang PetscFunctionReturn(0); 2497baa3c1c6SHong Zhang } 2498baa3c1c6SHong Zhang 24996718818eSStefano Zampini PetscErrorCode MatDestroy_MatMatTransMult_MPIDense_MPIDense(void *data) 2500cc48ffa7SToby Isaac { 25016718818eSStefano Zampini Mat_MatTransMultDense *abt = (Mat_MatTransMultDense *)data; 2502cc48ffa7SToby Isaac 2503cc48ffa7SToby Isaac PetscFunctionBegin; 25049566063dSJacob Faibussowitsch PetscCall(PetscFree2(abt->buf[0],abt->buf[1])); 25059566063dSJacob Faibussowitsch PetscCall(PetscFree2(abt->recvcounts,abt->recvdispls)); 25069566063dSJacob Faibussowitsch PetscCall(PetscFree(abt)); 2507cc48ffa7SToby Isaac PetscFunctionReturn(0); 2508cc48ffa7SToby Isaac } 2509cc48ffa7SToby Isaac 25106718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 2511cb20be35SHong Zhang { 2512baa3c1c6SHong Zhang Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 25136718818eSStefano Zampini Mat_TransMatMultDense *atb; 2514cb20be35SHong Zhang MPI_Comm comm; 25156718818eSStefano Zampini PetscMPIInt size,*recvcounts; 25166718818eSStefano Zampini PetscScalar *carray,*sendbuf; 2517637a0070SStefano Zampini const PetscScalar *atbarray; 2518a1f9a5e6SStefano Zampini PetscInt i,cN=C->cmap->N,proc,k,j,lda; 2519e68c0b26SHong Zhang const PetscInt *ranges; 2520cb20be35SHong Zhang 2521cb20be35SHong Zhang PetscFunctionBegin; 25226718818eSStefano Zampini MatCheckProduct(C,3); 25235f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 25246718818eSStefano Zampini atb = (Mat_TransMatMultDense *)C->product->data; 25256718818eSStefano Zampini recvcounts = atb->recvcounts; 25266718818eSStefano Zampini sendbuf = atb->sendbuf; 25276718818eSStefano Zampini 25289566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A,&comm)); 25299566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 2530e68c0b26SHong Zhang 2531c5ef1628SHong Zhang /* compute atbarray = aseq^T * bseq */ 25329566063dSJacob Faibussowitsch PetscCall(MatTransposeMatMult(a->A,b->A,atb->atb ? MAT_REUSE_MATRIX : MAT_INITIAL_MATRIX,PETSC_DEFAULT,&atb->atb)); 2533cb20be35SHong Zhang 25349566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRanges(C,&ranges)); 2535cb20be35SHong Zhang 2536660d5466SHong Zhang /* arrange atbarray into sendbuf */ 25379566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(atb->atb,&atbarray)); 25389566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(atb->atb,&lda)); 2539637a0070SStefano Zampini for (proc=0, k=0; proc<size; proc++) { 2540baa3c1c6SHong Zhang for (j=0; j<cN; j++) { 2541a1f9a5e6SStefano Zampini for (i=ranges[proc]; i<ranges[proc+1]; i++) sendbuf[k++] = atbarray[i+j*lda]; 2542cb20be35SHong Zhang } 2543cb20be35SHong Zhang } 25449566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(atb->atb,&atbarray)); 2545637a0070SStefano Zampini 2546c5ef1628SHong Zhang /* sum all atbarray to local values of C */ 25479566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(c->A,&carray)); 25489566063dSJacob Faibussowitsch PetscCallMPI(MPI_Reduce_scatter(sendbuf,carray,recvcounts,MPIU_SCALAR,MPIU_SUM,comm)); 25499566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(c->A,&carray)); 25509566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY)); 25519566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY)); 2552cb20be35SHong Zhang PetscFunctionReturn(0); 2553cb20be35SHong Zhang } 2554cb20be35SHong Zhang 25556718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat C) 2556cb20be35SHong Zhang { 2557cb20be35SHong Zhang MPI_Comm comm; 2558baa3c1c6SHong Zhang PetscMPIInt size; 2559660d5466SHong Zhang PetscInt cm=A->cmap->n,cM,cN=B->cmap->N; 2560baa3c1c6SHong Zhang Mat_TransMatMultDense *atb; 25616718818eSStefano Zampini PetscBool cisdense; 25620acaeb71SStefano Zampini PetscInt i; 25630acaeb71SStefano Zampini const PetscInt *ranges; 2564cb20be35SHong Zhang 2565cb20be35SHong Zhang PetscFunctionBegin; 25666718818eSStefano Zampini MatCheckProduct(C,3); 25675f80ce2aSJacob Faibussowitsch PetscCheck(!C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty"); 25689566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A,&comm)); 2569cb20be35SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) { 257098921bdaSJacob Faibussowitsch SETERRQ(comm,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != B (%" PetscInt_FMT ",%" PetscInt_FMT ")",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 2571cb20be35SHong Zhang } 2572cb20be35SHong Zhang 25734222ddf1SHong Zhang /* create matrix product C */ 25749566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C,cm,B->cmap->n,A->cmap->N,B->cmap->N)); 25759566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C,&cisdense,MATMPIDENSE,MATMPIDENSECUDA,"")); 25766718818eSStefano Zampini if (!cisdense) { 25779566063dSJacob Faibussowitsch PetscCall(MatSetType(C,((PetscObject)A)->type_name)); 25786718818eSStefano Zampini } 25799566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 2580baa3c1c6SHong Zhang 25814222ddf1SHong Zhang /* create data structure for reuse C */ 25829566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 25839566063dSJacob Faibussowitsch PetscCall(PetscNew(&atb)); 25844222ddf1SHong Zhang cM = C->rmap->N; 25859566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(cM*cN,&atb->sendbuf,size,&atb->recvcounts)); 25869566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRanges(C,&ranges)); 25870acaeb71SStefano Zampini for (i=0; i<size; i++) atb->recvcounts[i] = (ranges[i+1] - ranges[i])*cN; 2588baa3c1c6SHong Zhang 25896718818eSStefano Zampini C->product->data = atb; 25906718818eSStefano Zampini C->product->destroy = MatDestroy_MatTransMatMult_MPIDense_MPIDense; 2591cb20be35SHong Zhang PetscFunctionReturn(0); 2592cb20be35SHong Zhang } 2593cb20be35SHong Zhang 25944222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat A, Mat B, PetscReal fill, Mat C) 2595cb20be35SHong Zhang { 2596cc48ffa7SToby Isaac MPI_Comm comm; 2597cc48ffa7SToby Isaac PetscMPIInt i, size; 2598cc48ffa7SToby Isaac PetscInt maxRows, bufsiz; 2599cc48ffa7SToby Isaac PetscMPIInt tag; 26004222ddf1SHong Zhang PetscInt alg; 2601cc48ffa7SToby Isaac Mat_MatTransMultDense *abt; 26024222ddf1SHong Zhang Mat_Product *product = C->product; 26034222ddf1SHong Zhang PetscBool flg; 2604cc48ffa7SToby Isaac 2605cc48ffa7SToby Isaac PetscFunctionBegin; 26066718818eSStefano Zampini MatCheckProduct(C,4); 26075f80ce2aSJacob Faibussowitsch PetscCheck(!C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty"); 26084222ddf1SHong Zhang /* check local size of A and B */ 26095f80ce2aSJacob Faibussowitsch PetscCheck(A->cmap->n == B->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local column dimensions are incompatible, A (%" PetscInt_FMT ") != B (%" PetscInt_FMT ")",A->cmap->n,B->cmap->n); 2610cc48ffa7SToby Isaac 26119566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg,"allgatherv",&flg)); 2612637a0070SStefano Zampini alg = flg ? 0 : 1; 2613cc48ffa7SToby Isaac 26144222ddf1SHong Zhang /* setup matrix product C */ 26159566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C,A->rmap->n,B->rmap->n,A->rmap->N,B->rmap->N)); 26169566063dSJacob Faibussowitsch PetscCall(MatSetType(C,MATMPIDENSE)); 26179566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 26189566063dSJacob Faibussowitsch PetscCall(PetscObjectGetNewTag((PetscObject)C,&tag)); 26194222ddf1SHong Zhang 26204222ddf1SHong Zhang /* create data structure for reuse C */ 26219566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C,&comm)); 26229566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 26239566063dSJacob Faibussowitsch PetscCall(PetscNew(&abt)); 2624cc48ffa7SToby Isaac abt->tag = tag; 2625faa55883SToby Isaac abt->alg = alg; 2626faa55883SToby Isaac switch (alg) { 26274222ddf1SHong Zhang case 1: /* alg: "cyclic" */ 2628cc48ffa7SToby Isaac for (maxRows = 0, i = 0; i < size; i++) maxRows = PetscMax(maxRows, (B->rmap->range[i + 1] - B->rmap->range[i])); 2629cc48ffa7SToby Isaac bufsiz = A->cmap->N * maxRows; 26309566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(bufsiz,&(abt->buf[0]),bufsiz,&(abt->buf[1]))); 2631faa55883SToby Isaac break; 26324222ddf1SHong Zhang default: /* alg: "allgatherv" */ 26339566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(B->rmap->n * B->cmap->N, &(abt->buf[0]), B->rmap->N * B->cmap->N, &(abt->buf[1]))); 26349566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(size,&(abt->recvcounts),size+1,&(abt->recvdispls))); 2635faa55883SToby Isaac for (i = 0; i <= size; i++) abt->recvdispls[i] = B->rmap->range[i] * A->cmap->N; 2636faa55883SToby Isaac for (i = 0; i < size; i++) abt->recvcounts[i] = abt->recvdispls[i + 1] - abt->recvdispls[i]; 2637faa55883SToby Isaac break; 2638faa55883SToby Isaac } 2639cc48ffa7SToby Isaac 26406718818eSStefano Zampini C->product->data = abt; 26416718818eSStefano Zampini C->product->destroy = MatDestroy_MatMatTransMult_MPIDense_MPIDense; 26424222ddf1SHong Zhang C->ops->mattransposemultnumeric = MatMatTransposeMultNumeric_MPIDense_MPIDense; 2643cc48ffa7SToby Isaac PetscFunctionReturn(0); 2644cc48ffa7SToby Isaac } 2645cc48ffa7SToby Isaac 2646faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(Mat A, Mat B, Mat C) 2647cc48ffa7SToby Isaac { 2648cc48ffa7SToby Isaac Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 26496718818eSStefano Zampini Mat_MatTransMultDense *abt; 2650cc48ffa7SToby Isaac MPI_Comm comm; 2651cc48ffa7SToby Isaac PetscMPIInt rank,size, sendsiz, recvsiz, sendto, recvfrom, recvisfrom; 2652f4259b30SLisandro Dalcin PetscScalar *sendbuf, *recvbuf=NULL, *cv; 2653cc48ffa7SToby Isaac PetscInt i,cK=A->cmap->N,k,j,bn; 2654cc48ffa7SToby Isaac PetscScalar _DOne=1.0,_DZero=0.0; 2655637a0070SStefano Zampini const PetscScalar *av,*bv; 265623fff9afSBarry Smith PetscBLASInt cm, cn, ck, alda, blda = 0, clda; 2657cc48ffa7SToby Isaac MPI_Request reqs[2]; 2658cc48ffa7SToby Isaac const PetscInt *ranges; 2659cc48ffa7SToby Isaac 2660cc48ffa7SToby Isaac PetscFunctionBegin; 26616718818eSStefano Zampini MatCheckProduct(C,3); 26625f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 26636718818eSStefano Zampini abt = (Mat_MatTransMultDense*)C->product->data; 26649566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C,&comm)); 26659566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm,&rank)); 26669566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 26679566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A,&av)); 26689566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(b->A,&bv)); 26699566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(c->A,&cv)); 26709566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&i)); 26719566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i,&alda)); 26729566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(b->A,&i)); 26739566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i,&blda)); 26749566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(c->A,&i)); 26759566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i,&clda)); 26769566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRanges(B,&ranges)); 2677cc48ffa7SToby Isaac bn = B->rmap->n; 2678637a0070SStefano Zampini if (blda == bn) { 2679637a0070SStefano Zampini sendbuf = (PetscScalar*)bv; 2680cc48ffa7SToby Isaac } else { 2681cc48ffa7SToby Isaac sendbuf = abt->buf[0]; 2682cc48ffa7SToby Isaac for (k = 0, i = 0; i < cK; i++) { 2683cc48ffa7SToby Isaac for (j = 0; j < bn; j++, k++) { 2684637a0070SStefano Zampini sendbuf[k] = bv[i * blda + j]; 2685cc48ffa7SToby Isaac } 2686cc48ffa7SToby Isaac } 2687cc48ffa7SToby Isaac } 2688cc48ffa7SToby Isaac if (size > 1) { 2689cc48ffa7SToby Isaac sendto = (rank + size - 1) % size; 2690cc48ffa7SToby Isaac recvfrom = (rank + size + 1) % size; 2691cc48ffa7SToby Isaac } else { 2692cc48ffa7SToby Isaac sendto = recvfrom = 0; 2693cc48ffa7SToby Isaac } 26949566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(cK,&ck)); 26959566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(c->A->rmap->n,&cm)); 2696cc48ffa7SToby Isaac recvisfrom = rank; 2697cc48ffa7SToby Isaac for (i = 0; i < size; i++) { 2698cc48ffa7SToby Isaac /* we have finished receiving in sending, bufs can be read/modified */ 2699cc48ffa7SToby Isaac PetscInt nextrecvisfrom = (recvisfrom + 1) % size; /* which process the next recvbuf will originate on */ 2700cc48ffa7SToby Isaac PetscInt nextbn = ranges[nextrecvisfrom + 1] - ranges[nextrecvisfrom]; 2701cc48ffa7SToby Isaac 2702cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2703cc48ffa7SToby Isaac /* start the cyclic sends from sendbuf, to recvbuf (which will switch to sendbuf) */ 2704cc48ffa7SToby Isaac sendsiz = cK * bn; 2705cc48ffa7SToby Isaac recvsiz = cK * nextbn; 2706cc48ffa7SToby Isaac recvbuf = (i & 1) ? abt->buf[0] : abt->buf[1]; 27079566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(sendbuf, sendsiz, MPIU_SCALAR, sendto, abt->tag, comm, &reqs[0])); 27089566063dSJacob Faibussowitsch PetscCallMPI(MPI_Irecv(recvbuf, recvsiz, MPIU_SCALAR, recvfrom, abt->tag, comm, &reqs[1])); 2709cc48ffa7SToby Isaac } 2710cc48ffa7SToby Isaac 2711cc48ffa7SToby Isaac /* local aseq * sendbuf^T */ 27129566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(ranges[recvisfrom + 1] - ranges[recvisfrom], &cn)); 271350ce3c9cSStefano Zampini if (cm && cn && ck) PetscStackCallBLAS("BLASgemm",BLASgemm_("N","T",&cm,&cn,&ck,&_DOne,av,&alda,sendbuf,&cn,&_DZero,cv + clda * ranges[recvisfrom],&clda)); 2714cc48ffa7SToby Isaac 2715cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2716cc48ffa7SToby Isaac /* wait for the sends and receives to complete, swap sendbuf and recvbuf */ 27179566063dSJacob Faibussowitsch PetscCallMPI(MPI_Waitall(2, reqs, MPI_STATUSES_IGNORE)); 2718cc48ffa7SToby Isaac } 2719cc48ffa7SToby Isaac bn = nextbn; 2720cc48ffa7SToby Isaac recvisfrom = nextrecvisfrom; 2721cc48ffa7SToby Isaac sendbuf = recvbuf; 2722cc48ffa7SToby Isaac } 27239566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A,&av)); 27249566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(b->A,&bv)); 27259566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(c->A,&cv)); 27269566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY)); 27279566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY)); 2728cc48ffa7SToby Isaac PetscFunctionReturn(0); 2729cc48ffa7SToby Isaac } 2730cc48ffa7SToby Isaac 2731faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(Mat A, Mat B, Mat C) 2732faa55883SToby Isaac { 2733faa55883SToby Isaac Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 27346718818eSStefano Zampini Mat_MatTransMultDense *abt; 2735faa55883SToby Isaac MPI_Comm comm; 2736637a0070SStefano Zampini PetscMPIInt size; 2737637a0070SStefano Zampini PetscScalar *cv, *sendbuf, *recvbuf; 2738637a0070SStefano Zampini const PetscScalar *av,*bv; 2739637a0070SStefano Zampini PetscInt blda,i,cK=A->cmap->N,k,j,bn; 2740faa55883SToby Isaac PetscScalar _DOne=1.0,_DZero=0.0; 2741637a0070SStefano Zampini PetscBLASInt cm, cn, ck, alda, clda; 2742faa55883SToby Isaac 2743faa55883SToby Isaac PetscFunctionBegin; 27446718818eSStefano Zampini MatCheckProduct(C,3); 27455f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 27466718818eSStefano Zampini abt = (Mat_MatTransMultDense*)C->product->data; 27479566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A,&comm)); 27489566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 27499566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A,&av)); 27509566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(b->A,&bv)); 27519566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(c->A,&cv)); 27529566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&i)); 27539566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i,&alda)); 27549566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(b->A,&blda)); 27559566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(c->A,&i)); 27569566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i,&clda)); 2757faa55883SToby Isaac /* copy transpose of B into buf[0] */ 2758faa55883SToby Isaac bn = B->rmap->n; 2759faa55883SToby Isaac sendbuf = abt->buf[0]; 2760faa55883SToby Isaac recvbuf = abt->buf[1]; 2761faa55883SToby Isaac for (k = 0, j = 0; j < bn; j++) { 2762faa55883SToby Isaac for (i = 0; i < cK; i++, k++) { 2763637a0070SStefano Zampini sendbuf[k] = bv[i * blda + j]; 2764faa55883SToby Isaac } 2765faa55883SToby Isaac } 27669566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(b->A,&bv)); 27679566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgatherv(sendbuf, bn * cK, MPIU_SCALAR, recvbuf, abt->recvcounts, abt->recvdispls, MPIU_SCALAR, comm)); 27689566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(cK,&ck)); 27699566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(c->A->rmap->n,&cm)); 27709566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(c->A->cmap->n,&cn)); 277150ce3c9cSStefano Zampini if (cm && cn && ck) PetscStackCallBLAS("BLASgemm",BLASgemm_("N","N",&cm,&cn,&ck,&_DOne,av,&alda,recvbuf,&ck,&_DZero,cv,&clda)); 27729566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A,&av)); 27739566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(b->A,&bv)); 27749566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(c->A,&cv)); 27759566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY)); 27769566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY)); 2777faa55883SToby Isaac PetscFunctionReturn(0); 2778faa55883SToby Isaac } 2779faa55883SToby Isaac 2780faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat A, Mat B, Mat C) 2781faa55883SToby Isaac { 27826718818eSStefano Zampini Mat_MatTransMultDense *abt; 2783faa55883SToby Isaac 2784faa55883SToby Isaac PetscFunctionBegin; 27856718818eSStefano Zampini MatCheckProduct(C,3); 27865f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 27876718818eSStefano Zampini abt = (Mat_MatTransMultDense*)C->product->data; 2788faa55883SToby Isaac switch (abt->alg) { 2789faa55883SToby Isaac case 1: 27909566063dSJacob Faibussowitsch PetscCall(MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(A, B, C)); 2791faa55883SToby Isaac break; 2792faa55883SToby Isaac default: 27939566063dSJacob Faibussowitsch PetscCall(MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(A, B, C)); 2794faa55883SToby Isaac break; 2795faa55883SToby Isaac } 2796faa55883SToby Isaac PetscFunctionReturn(0); 2797faa55883SToby Isaac } 2798faa55883SToby Isaac 27996718818eSStefano Zampini PetscErrorCode MatDestroy_MatMatMult_MPIDense_MPIDense(void *data) 2800320f2790SHong Zhang { 28016718818eSStefano Zampini Mat_MatMultDense *ab = (Mat_MatMultDense*)data; 2802320f2790SHong Zhang 2803320f2790SHong Zhang PetscFunctionBegin; 28049566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ab->Ce)); 28059566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ab->Ae)); 28069566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ab->Be)); 28079566063dSJacob Faibussowitsch PetscCall(PetscFree(ab)); 2808320f2790SHong Zhang PetscFunctionReturn(0); 2809320f2790SHong Zhang } 2810320f2790SHong Zhang 28115242a7b1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 2812320f2790SHong Zhang PetscErrorCode MatMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 2813320f2790SHong Zhang { 28146718818eSStefano Zampini Mat_MatMultDense *ab; 2815320f2790SHong Zhang 2816320f2790SHong Zhang PetscFunctionBegin; 28176718818eSStefano Zampini MatCheckProduct(C,3); 28185f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Missing product data"); 28196718818eSStefano Zampini ab = (Mat_MatMultDense*)C->product->data; 28209566063dSJacob Faibussowitsch PetscCall(MatConvert_MPIDense_Elemental(A,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Ae)); 28219566063dSJacob Faibussowitsch PetscCall(MatConvert_MPIDense_Elemental(B,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Be)); 28229566063dSJacob Faibussowitsch PetscCall(MatMatMultNumeric_Elemental(ab->Ae,ab->Be,ab->Ce)); 28239566063dSJacob Faibussowitsch PetscCall(MatConvert(ab->Ce,MATMPIDENSE,MAT_REUSE_MATRIX,&C)); 2824320f2790SHong Zhang PetscFunctionReturn(0); 2825320f2790SHong Zhang } 2826320f2790SHong Zhang 28276718818eSStefano Zampini static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat C) 2828320f2790SHong Zhang { 2829320f2790SHong Zhang Mat Ae,Be,Ce; 2830320f2790SHong Zhang Mat_MatMultDense *ab; 2831320f2790SHong Zhang 2832320f2790SHong Zhang PetscFunctionBegin; 28336718818eSStefano Zampini MatCheckProduct(C,4); 28345f80ce2aSJacob Faibussowitsch PetscCheck(!C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty"); 28354222ddf1SHong Zhang /* check local size of A and B */ 2836320f2790SHong Zhang if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend) { 283798921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != B (%" PetscInt_FMT ",%" PetscInt_FMT ")",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 2838320f2790SHong Zhang } 2839320f2790SHong Zhang 28404222ddf1SHong Zhang /* create elemental matrices Ae and Be */ 28419566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &Ae)); 28429566063dSJacob Faibussowitsch PetscCall(MatSetSizes(Ae,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N)); 28439566063dSJacob Faibussowitsch PetscCall(MatSetType(Ae,MATELEMENTAL)); 28449566063dSJacob Faibussowitsch PetscCall(MatSetUp(Ae)); 28459566063dSJacob Faibussowitsch PetscCall(MatSetOption(Ae,MAT_ROW_ORIENTED,PETSC_FALSE)); 2846320f2790SHong Zhang 28479566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)B), &Be)); 28489566063dSJacob Faibussowitsch PetscCall(MatSetSizes(Be,PETSC_DECIDE,PETSC_DECIDE,B->rmap->N,B->cmap->N)); 28499566063dSJacob Faibussowitsch PetscCall(MatSetType(Be,MATELEMENTAL)); 28509566063dSJacob Faibussowitsch PetscCall(MatSetUp(Be)); 28519566063dSJacob Faibussowitsch PetscCall(MatSetOption(Be,MAT_ROW_ORIENTED,PETSC_FALSE)); 2852320f2790SHong Zhang 28534222ddf1SHong Zhang /* compute symbolic Ce = Ae*Be */ 28549566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)C),&Ce)); 28559566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_Elemental(Ae,Be,fill,Ce)); 28564222ddf1SHong Zhang 28574222ddf1SHong Zhang /* setup C */ 28589566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C,A->rmap->n,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE)); 28599566063dSJacob Faibussowitsch PetscCall(MatSetType(C,MATDENSE)); 28609566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 2861320f2790SHong Zhang 2862320f2790SHong Zhang /* create data structure for reuse Cdense */ 28639566063dSJacob Faibussowitsch PetscCall(PetscNew(&ab)); 2864320f2790SHong Zhang ab->Ae = Ae; 2865320f2790SHong Zhang ab->Be = Be; 2866320f2790SHong Zhang ab->Ce = Ce; 28676718818eSStefano Zampini 28686718818eSStefano Zampini C->product->data = ab; 28696718818eSStefano Zampini C->product->destroy = MatDestroy_MatMatMult_MPIDense_MPIDense; 28704222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIDense; 2871320f2790SHong Zhang PetscFunctionReturn(0); 2872320f2790SHong Zhang } 28734222ddf1SHong Zhang #endif 28744222ddf1SHong Zhang /* ----------------------------------------------- */ 28754222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 28764222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_AB(Mat C) 2877320f2790SHong Zhang { 2878320f2790SHong Zhang PetscFunctionBegin; 28794222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIDense; 28804222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 2881320f2790SHong Zhang PetscFunctionReturn(0); 2882320f2790SHong Zhang } 28835242a7b1SHong Zhang #endif 288486aefd0dSHong Zhang 28854222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_AtB(Mat C) 28864222ddf1SHong Zhang { 28874222ddf1SHong Zhang Mat_Product *product = C->product; 28884222ddf1SHong Zhang Mat A = product->A,B=product->B; 28894222ddf1SHong Zhang 28904222ddf1SHong Zhang PetscFunctionBegin; 28914222ddf1SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) 289298921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 28936718818eSStefano Zampini C->ops->transposematmultsymbolic = MatTransposeMatMultSymbolic_MPIDense_MPIDense; 28946718818eSStefano Zampini C->ops->productsymbolic = MatProductSymbolic_AtB; 28954222ddf1SHong Zhang PetscFunctionReturn(0); 28964222ddf1SHong Zhang } 28974222ddf1SHong Zhang 28984222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_ABt(Mat C) 28994222ddf1SHong Zhang { 29004222ddf1SHong Zhang Mat_Product *product = C->product; 29014222ddf1SHong Zhang const char *algTypes[2] = {"allgatherv","cyclic"}; 29024222ddf1SHong Zhang PetscInt alg,nalg = 2; 29034222ddf1SHong Zhang PetscBool flg = PETSC_FALSE; 29044222ddf1SHong Zhang 29054222ddf1SHong Zhang PetscFunctionBegin; 29064222ddf1SHong Zhang /* Set default algorithm */ 29074222ddf1SHong Zhang alg = 0; /* default is allgatherv */ 29089566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg,"default",&flg)); 29094222ddf1SHong Zhang if (flg) { 29109566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg])); 29114222ddf1SHong Zhang } 29124222ddf1SHong Zhang 29134222ddf1SHong Zhang /* Get runtime option */ 29144222ddf1SHong Zhang if (product->api_user) { 2915d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatMatTransposeMult","Mat"); 29169566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-matmattransmult_mpidense_mpidense_via","Algorithmic approach","MatMatTransposeMult",algTypes,nalg,algTypes[alg],&alg,&flg)); 2917d0609cedSBarry Smith PetscOptionsEnd(); 29184222ddf1SHong Zhang } else { 2919d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatProduct_ABt","Mat"); 29209566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm","Algorithmic approach","MatProduct_ABt",algTypes,nalg,algTypes[alg],&alg,&flg)); 2921d0609cedSBarry Smith PetscOptionsEnd(); 29224222ddf1SHong Zhang } 29234222ddf1SHong Zhang if (flg) { 29249566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg])); 29254222ddf1SHong Zhang } 29264222ddf1SHong Zhang 29274222ddf1SHong Zhang C->ops->mattransposemultsymbolic = MatMatTransposeMultSymbolic_MPIDense_MPIDense; 29284222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_ABt; 29294222ddf1SHong Zhang PetscFunctionReturn(0); 29304222ddf1SHong Zhang } 29314222ddf1SHong Zhang 29324222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense(Mat C) 29334222ddf1SHong Zhang { 29344222ddf1SHong Zhang Mat_Product *product = C->product; 29354222ddf1SHong Zhang 29364222ddf1SHong Zhang PetscFunctionBegin; 29374222ddf1SHong Zhang switch (product->type) { 29384222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 29394222ddf1SHong Zhang case MATPRODUCT_AB: 29409566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIDense_AB(C)); 29414222ddf1SHong Zhang break; 29424222ddf1SHong Zhang #endif 29434222ddf1SHong Zhang case MATPRODUCT_AtB: 29449566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIDense_AtB(C)); 29454222ddf1SHong Zhang break; 29464222ddf1SHong Zhang case MATPRODUCT_ABt: 29479566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIDense_ABt(C)); 29484222ddf1SHong Zhang break; 29496718818eSStefano Zampini default: 29506718818eSStefano Zampini break; 29514222ddf1SHong Zhang } 29524222ddf1SHong Zhang PetscFunctionReturn(0); 29534222ddf1SHong Zhang } 2954