1a5eb4965SSatish Balay #ifdef PETSC_RCS_HEADER 2*3a40ed3dSBarry Smith static char vcid[] = "$Id: mpidense.c,v 1.74 1997/09/26 02:18:58 bsmith Exp bsmith $"; 38965ea79SLois Curfman McInnes #endif 48965ea79SLois Curfman McInnes 5ed3cc1f0SBarry Smith /* 6ed3cc1f0SBarry Smith Basic functions for basic parallel dense matrices. 7ed3cc1f0SBarry Smith */ 8ed3cc1f0SBarry Smith 970f55243SBarry Smith #include "src/mat/impls/dense/mpi/mpidense.h" 10f5eb4b81SSatish Balay #include "src/vec/vecimpl.h" 118965ea79SLois Curfman McInnes 125615d1e5SSatish Balay #undef __FUNC__ 135615d1e5SSatish Balay #define __FUNC__ "MatSetValues_MPIDense" 148f6be9afSLois Curfman McInnes int MatSetValues_MPIDense(Mat mat,int m,int *idxm,int n,int *idxn,Scalar *v,InsertMode addv) 158965ea79SLois Curfman McInnes { 1639b7565bSBarry Smith Mat_MPIDense *A = (Mat_MPIDense *) mat->data; 1739b7565bSBarry Smith int ierr, i, j, rstart = A->rstart, rend = A->rend, row; 1839b7565bSBarry Smith int roworiented = A->roworiented; 198965ea79SLois Curfman McInnes 20*3a40ed3dSBarry Smith PetscFunctionBegin; 218965ea79SLois Curfman McInnes for ( i=0; i<m; i++ ) { 22e3372554SBarry Smith if (idxm[i] < 0) SETERRQ(1,0,"Negative row"); 23e3372554SBarry Smith if (idxm[i] >= A->M) SETERRQ(1,0,"Row too large"); 248965ea79SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 258965ea79SLois Curfman McInnes row = idxm[i] - rstart; 2639b7565bSBarry Smith if (roworiented) { 2739b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv); CHKERRQ(ierr); 28*3a40ed3dSBarry Smith } else { 298965ea79SLois Curfman McInnes for ( j=0; j<n; j++ ) { 30e3372554SBarry Smith if (idxn[j] < 0) SETERRQ(1,0,"Negative column"); 31e3372554SBarry Smith if (idxn[j] >= A->N) SETERRQ(1,0,"Column too large"); 3239b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv); CHKERRQ(ierr); 3339b7565bSBarry Smith } 348965ea79SLois Curfman McInnes } 35*3a40ed3dSBarry Smith } else { 3639b7565bSBarry Smith if (roworiented) { 3739b7565bSBarry Smith ierr = StashValues_Private(&A->stash,idxm[i],n,idxn,v+i*n,addv); CHKERRQ(ierr); 38*3a40ed3dSBarry Smith } else { /* must stash each seperately */ 3939b7565bSBarry Smith row = idxm[i]; 4039b7565bSBarry Smith for ( j=0; j<n; j++ ) { 417056b6fcSBarry Smith ierr = StashValues_Private(&A->stash,row,1,&idxn[j],v+i+j*m,addv);CHKERRQ(ierr); 4239b7565bSBarry Smith } 4339b7565bSBarry Smith } 44b49de8d1SLois Curfman McInnes } 45b49de8d1SLois Curfman McInnes } 46*3a40ed3dSBarry Smith PetscFunctionReturn(0); 47b49de8d1SLois Curfman McInnes } 48b49de8d1SLois Curfman McInnes 495615d1e5SSatish Balay #undef __FUNC__ 505615d1e5SSatish Balay #define __FUNC__ "MatGetValues_MPIDense" 518f6be9afSLois Curfman McInnes int MatGetValues_MPIDense(Mat mat,int m,int *idxm,int n,int *idxn,Scalar *v) 52b49de8d1SLois Curfman McInnes { 53b49de8d1SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data; 54b49de8d1SLois Curfman McInnes int ierr, i, j, rstart = mdn->rstart, rend = mdn->rend, row; 55b49de8d1SLois Curfman McInnes 56*3a40ed3dSBarry Smith PetscFunctionBegin; 57b49de8d1SLois Curfman McInnes for ( i=0; i<m; i++ ) { 58e3372554SBarry Smith if (idxm[i] < 0) SETERRQ(1,0,"Negative row"); 59e3372554SBarry Smith if (idxm[i] >= mdn->M) SETERRQ(1,0,"Row too large"); 60b49de8d1SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 61b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 62b49de8d1SLois Curfman McInnes for ( j=0; j<n; j++ ) { 63e3372554SBarry Smith if (idxn[j] < 0) SETERRQ(1,0,"Negative column"); 64b49de8d1SLois Curfman McInnes if (idxn[j] >= mdn->N) 65e3372554SBarry Smith SETERRQ(1,0,"Column too large"); 66b49de8d1SLois Curfman McInnes ierr = MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j); CHKERRQ(ierr); 67b49de8d1SLois Curfman McInnes } 68b49de8d1SLois Curfman McInnes } 69b49de8d1SLois Curfman McInnes else { 70e3372554SBarry Smith SETERRQ(1,0,"Only local values currently supported"); 718965ea79SLois Curfman McInnes } 728965ea79SLois Curfman McInnes } 73*3a40ed3dSBarry Smith PetscFunctionReturn(0); 748965ea79SLois Curfman McInnes } 758965ea79SLois Curfman McInnes 765615d1e5SSatish Balay #undef __FUNC__ 775615d1e5SSatish Balay #define __FUNC__ "MatGetArray_MPIDense" 788f6be9afSLois Curfman McInnes int MatGetArray_MPIDense(Mat A,Scalar **array) 79ff14e315SSatish Balay { 80ff14e315SSatish Balay Mat_MPIDense *a = (Mat_MPIDense *) A->data; 81ff14e315SSatish Balay int ierr; 82ff14e315SSatish Balay 83*3a40ed3dSBarry Smith PetscFunctionBegin; 84ff14e315SSatish Balay ierr = MatGetArray(a->A,array); CHKERRQ(ierr); 85*3a40ed3dSBarry Smith PetscFunctionReturn(0); 86ff14e315SSatish Balay } 87ff14e315SSatish Balay 885615d1e5SSatish Balay #undef __FUNC__ 895615d1e5SSatish Balay #define __FUNC__ "MatRestoreArray_MPIDense" 908f6be9afSLois Curfman McInnes int MatRestoreArray_MPIDense(Mat A,Scalar **array) 91ff14e315SSatish Balay { 92*3a40ed3dSBarry Smith PetscFunctionBegin; 93*3a40ed3dSBarry Smith PetscFunctionReturn(0); 94ff14e315SSatish Balay } 95ff14e315SSatish Balay 965615d1e5SSatish Balay #undef __FUNC__ 975615d1e5SSatish Balay #define __FUNC__ "MatAssemblyBegin_MPIDense" 988f6be9afSLois Curfman McInnes int MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode) 998965ea79SLois Curfman McInnes { 10039ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data; 1018965ea79SLois Curfman McInnes MPI_Comm comm = mat->comm; 10239ddd567SLois Curfman McInnes int size = mdn->size, *owners = mdn->rowners, rank = mdn->rank; 1038965ea79SLois Curfman McInnes int *nprocs,i,j,idx,*procs,nsends,nreceives,nmax,*work; 10439ddd567SLois Curfman McInnes int tag = mat->tag, *owner,*starts,count,ierr; 1058965ea79SLois Curfman McInnes InsertMode addv; 10639ddd567SLois Curfman McInnes MPI_Request *send_waits,*recv_waits; 1078965ea79SLois Curfman McInnes Scalar *rvalues,*svalues; 1088965ea79SLois Curfman McInnes 109*3a40ed3dSBarry Smith PetscFunctionBegin; 1108965ea79SLois Curfman McInnes /* make sure all processors are either in INSERTMODE or ADDMODE */ 111e0fa3b82SLois Curfman McInnes MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,comm); 1127056b6fcSBarry Smith if (addv == (ADD_VALUES|INSERT_VALUES)) { 113e3372554SBarry Smith SETERRQ(1,0,"Cannot mix adds/inserts on different procs"); 1148965ea79SLois Curfman McInnes } 115e0fa3b82SLois Curfman McInnes mat->insertmode = addv; /* in case this processor had no cache */ 1168965ea79SLois Curfman McInnes 1178965ea79SLois Curfman McInnes /* first count number of contributors to each processor */ 1180452661fSBarry Smith nprocs = (int *) PetscMalloc( 2*size*sizeof(int) ); CHKPTRQ(nprocs); 119cddf8d76SBarry Smith PetscMemzero(nprocs,2*size*sizeof(int)); procs = nprocs + size; 1200452661fSBarry Smith owner = (int *) PetscMalloc( (mdn->stash.n+1)*sizeof(int) ); CHKPTRQ(owner); 12139ddd567SLois Curfman McInnes for ( i=0; i<mdn->stash.n; i++ ) { 12239ddd567SLois Curfman McInnes idx = mdn->stash.idx[i]; 1238965ea79SLois Curfman McInnes for ( j=0; j<size; j++ ) { 1248965ea79SLois Curfman McInnes if (idx >= owners[j] && idx < owners[j+1]) { 1258965ea79SLois Curfman McInnes nprocs[j]++; procs[j] = 1; owner[i] = j; break; 1268965ea79SLois Curfman McInnes } 1278965ea79SLois Curfman McInnes } 1288965ea79SLois Curfman McInnes } 1298965ea79SLois Curfman McInnes nsends = 0; for ( i=0; i<size; i++ ) { nsends += procs[i];} 1308965ea79SLois Curfman McInnes 1318965ea79SLois Curfman McInnes /* inform other processors of number of messages and max length*/ 1320452661fSBarry Smith work = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(work); 1336d84be18SBarry Smith MPI_Allreduce(procs,work,size,MPI_INT,MPI_SUM,comm); 1348965ea79SLois Curfman McInnes nreceives = work[rank]; 135e3372554SBarry Smith if (nreceives > size) SETERRQ(1,0,"Internal PETSc error"); 1366d84be18SBarry Smith MPI_Allreduce(nprocs,work,size,MPI_INT,MPI_MAX,comm); 1378965ea79SLois Curfman McInnes nmax = work[rank]; 1380452661fSBarry Smith PetscFree(work); 1398965ea79SLois Curfman McInnes 1408965ea79SLois Curfman McInnes /* post receives: 1418965ea79SLois Curfman McInnes 1) each message will consist of ordered pairs 1428965ea79SLois Curfman McInnes (global index,value) we store the global index as a double 1438965ea79SLois Curfman McInnes to simplify the message passing. 1448965ea79SLois Curfman McInnes 2) since we don't know how long each individual message is we 1458965ea79SLois Curfman McInnes allocate the largest needed buffer for each receive. Potentially 1468965ea79SLois Curfman McInnes this is a lot of wasted space. 1478965ea79SLois Curfman McInnes 1488965ea79SLois Curfman McInnes This could be done better. 1498965ea79SLois Curfman McInnes */ 1503b2fbd54SBarry Smith rvalues = (Scalar *) PetscMalloc(3*(nreceives+1)*(nmax+1)*sizeof(Scalar));CHKPTRQ(rvalues); 1513b2fbd54SBarry Smith recv_waits = (MPI_Request *) PetscMalloc((nreceives+1)*sizeof(MPI_Request));CHKPTRQ(recv_waits); 1528965ea79SLois Curfman McInnes for ( i=0; i<nreceives; i++ ) { 1537056b6fcSBarry Smith MPI_Irecv(rvalues+3*nmax*i,3*nmax,MPIU_SCALAR,MPI_ANY_SOURCE,tag,comm,recv_waits+i); 1548965ea79SLois Curfman McInnes } 1558965ea79SLois Curfman McInnes 1568965ea79SLois Curfman McInnes /* do sends: 1578965ea79SLois Curfman McInnes 1) starts[i] gives the starting index in svalues for stuff going to 1588965ea79SLois Curfman McInnes the ith processor 1598965ea79SLois Curfman McInnes */ 1603b2fbd54SBarry Smith svalues = (Scalar *) PetscMalloc( 3*(mdn->stash.n+1)*sizeof(Scalar));CHKPTRQ(svalues); 1613b2fbd54SBarry Smith send_waits = (MPI_Request *) PetscMalloc((nsends+1)*sizeof(MPI_Request));CHKPTRQ(send_waits); 1620452661fSBarry Smith starts = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(starts); 1638965ea79SLois Curfman McInnes starts[0] = 0; 1648965ea79SLois Curfman McInnes for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 16539ddd567SLois Curfman McInnes for ( i=0; i<mdn->stash.n; i++ ) { 16639ddd567SLois Curfman McInnes svalues[3*starts[owner[i]]] = (Scalar) mdn->stash.idx[i]; 16739ddd567SLois Curfman McInnes svalues[3*starts[owner[i]]+1] = (Scalar) mdn->stash.idy[i]; 16839ddd567SLois Curfman McInnes svalues[3*(starts[owner[i]]++)+2] = mdn->stash.array[i]; 1698965ea79SLois Curfman McInnes } 1700452661fSBarry Smith PetscFree(owner); 1718965ea79SLois Curfman McInnes starts[0] = 0; 1728965ea79SLois Curfman McInnes for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 1738965ea79SLois Curfman McInnes count = 0; 1748965ea79SLois Curfman McInnes for ( i=0; i<size; i++ ) { 1758965ea79SLois Curfman McInnes if (procs[i]) { 1767056b6fcSBarry Smith MPI_Isend(svalues+3*starts[i],3*nprocs[i],MPIU_SCALAR,i,tag,comm,send_waits+count++); 1778965ea79SLois Curfman McInnes } 1788965ea79SLois Curfman McInnes } 1790452661fSBarry Smith PetscFree(starts); PetscFree(nprocs); 1808965ea79SLois Curfman McInnes 1818965ea79SLois Curfman McInnes /* Free cache space */ 182d2dc9b81SLois Curfman McInnes PLogInfo(mat,"MatAssemblyBegin_MPIDense:Number of off-processor values %d\n",mdn->stash.n); 18339ddd567SLois Curfman McInnes ierr = StashDestroy_Private(&mdn->stash); CHKERRQ(ierr); 1848965ea79SLois Curfman McInnes 18539ddd567SLois Curfman McInnes mdn->svalues = svalues; mdn->rvalues = rvalues; 18639ddd567SLois Curfman McInnes mdn->nsends = nsends; mdn->nrecvs = nreceives; 18739ddd567SLois Curfman McInnes mdn->send_waits = send_waits; mdn->recv_waits = recv_waits; 18839ddd567SLois Curfman McInnes mdn->rmax = nmax; 1898965ea79SLois Curfman McInnes 190*3a40ed3dSBarry Smith PetscFunctionReturn(0); 1918965ea79SLois Curfman McInnes } 19239ddd567SLois Curfman McInnes extern int MatSetUpMultiply_MPIDense(Mat); 1938965ea79SLois Curfman McInnes 1945615d1e5SSatish Balay #undef __FUNC__ 1955615d1e5SSatish Balay #define __FUNC__ "MatAssemblyEnd_MPIDense" 1968f6be9afSLois Curfman McInnes int MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode) 1978965ea79SLois Curfman McInnes { 19839ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data; 1998965ea79SLois Curfman McInnes MPI_Status *send_status,recv_status; 20039ddd567SLois Curfman McInnes int imdex, nrecvs=mdn->nrecvs, count=nrecvs, i, n, ierr, row, col; 2018965ea79SLois Curfman McInnes Scalar *values,val; 202e0fa3b82SLois Curfman McInnes InsertMode addv = mat->insertmode; 2038965ea79SLois Curfman McInnes 204*3a40ed3dSBarry Smith PetscFunctionBegin; 2058965ea79SLois Curfman McInnes /* wait on receives */ 2068965ea79SLois Curfman McInnes while (count) { 20739ddd567SLois Curfman McInnes MPI_Waitany(nrecvs,mdn->recv_waits,&imdex,&recv_status); 2088965ea79SLois Curfman McInnes /* unpack receives into our local space */ 20939ddd567SLois Curfman McInnes values = mdn->rvalues + 3*imdex*mdn->rmax; 2108965ea79SLois Curfman McInnes MPI_Get_count(&recv_status,MPIU_SCALAR,&n); 2118965ea79SLois Curfman McInnes n = n/3; 2128965ea79SLois Curfman McInnes for ( i=0; i<n; i++ ) { 213227d817aSBarry Smith row = (int) PetscReal(values[3*i]) - mdn->rstart; 214227d817aSBarry Smith col = (int) PetscReal(values[3*i+1]); 2158965ea79SLois Curfman McInnes val = values[3*i+2]; 21639ddd567SLois Curfman McInnes if (col >= 0 && col < mdn->N) { 21739ddd567SLois Curfman McInnes MatSetValues(mdn->A,1,&row,1,&col,&val,addv); 2188965ea79SLois Curfman McInnes } 219e3372554SBarry Smith else {SETERRQ(1,0,"Invalid column");} 2208965ea79SLois Curfman McInnes } 2218965ea79SLois Curfman McInnes count--; 2228965ea79SLois Curfman McInnes } 2230452661fSBarry Smith PetscFree(mdn->recv_waits); PetscFree(mdn->rvalues); 2248965ea79SLois Curfman McInnes 2258965ea79SLois Curfman McInnes /* wait on sends */ 22639ddd567SLois Curfman McInnes if (mdn->nsends) { 2277056b6fcSBarry Smith send_status = (MPI_Status *) PetscMalloc(mdn->nsends*sizeof(MPI_Status));CHKPTRQ(send_status); 22839ddd567SLois Curfman McInnes MPI_Waitall(mdn->nsends,mdn->send_waits,send_status); 2290452661fSBarry Smith PetscFree(send_status); 2308965ea79SLois Curfman McInnes } 2310452661fSBarry Smith PetscFree(mdn->send_waits); PetscFree(mdn->svalues); 2328965ea79SLois Curfman McInnes 23339ddd567SLois Curfman McInnes ierr = MatAssemblyBegin(mdn->A,mode); CHKERRQ(ierr); 23439ddd567SLois Curfman McInnes ierr = MatAssemblyEnd(mdn->A,mode); CHKERRQ(ierr); 2358965ea79SLois Curfman McInnes 2366d4a8577SBarry Smith if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 23739ddd567SLois Curfman McInnes ierr = MatSetUpMultiply_MPIDense(mat); CHKERRQ(ierr); 2388965ea79SLois Curfman McInnes } 239*3a40ed3dSBarry Smith PetscFunctionReturn(0); 2408965ea79SLois Curfman McInnes } 2418965ea79SLois Curfman McInnes 2425615d1e5SSatish Balay #undef __FUNC__ 2435615d1e5SSatish Balay #define __FUNC__ "MatZeroEntries_MPIDense" 2448f6be9afSLois Curfman McInnes int MatZeroEntries_MPIDense(Mat A) 2458965ea79SLois Curfman McInnes { 246*3a40ed3dSBarry Smith int ierr; 24739ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense *) A->data; 248*3a40ed3dSBarry Smith 249*3a40ed3dSBarry Smith PetscFunctionBegin; 250*3a40ed3dSBarry Smith ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 251*3a40ed3dSBarry Smith PetscFunctionReturn(0); 2528965ea79SLois Curfman McInnes } 2538965ea79SLois Curfman McInnes 2545615d1e5SSatish Balay #undef __FUNC__ 2555615d1e5SSatish Balay #define __FUNC__ "MatGetBlockSize_MPIDense" 2568f6be9afSLois Curfman McInnes int MatGetBlockSize_MPIDense(Mat A,int *bs) 2574e220ebcSLois Curfman McInnes { 258*3a40ed3dSBarry Smith PetscFunctionBegin; 2594e220ebcSLois Curfman McInnes *bs = 1; 260*3a40ed3dSBarry Smith PetscFunctionReturn(0); 2614e220ebcSLois Curfman McInnes } 2624e220ebcSLois Curfman McInnes 2638965ea79SLois Curfman McInnes /* the code does not do the diagonal entries correctly unless the 2648965ea79SLois Curfman McInnes matrix is square and the column and row owerships are identical. 2658965ea79SLois Curfman McInnes This is a BUG. The only way to fix it seems to be to access 2663501a2bdSLois Curfman McInnes mdn->A and mdn->B directly and not through the MatZeroRows() 2678965ea79SLois Curfman McInnes routine. 2688965ea79SLois Curfman McInnes */ 2695615d1e5SSatish Balay #undef __FUNC__ 2705615d1e5SSatish Balay #define __FUNC__ "MatZeroRows_MPIDense" 2718f6be9afSLois Curfman McInnes int MatZeroRows_MPIDense(Mat A,IS is,Scalar *diag) 2728965ea79SLois Curfman McInnes { 27339ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense *) A->data; 2748965ea79SLois Curfman McInnes int i,ierr,N, *rows,*owners = l->rowners,size = l->size; 2758965ea79SLois Curfman McInnes int *procs,*nprocs,j,found,idx,nsends,*work; 2768965ea79SLois Curfman McInnes int nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank; 2778965ea79SLois Curfman McInnes int *rvalues,tag = A->tag,count,base,slen,n,*source; 2788965ea79SLois Curfman McInnes int *lens,imdex,*lrows,*values; 2798965ea79SLois Curfman McInnes MPI_Comm comm = A->comm; 2808965ea79SLois Curfman McInnes MPI_Request *send_waits,*recv_waits; 2818965ea79SLois Curfman McInnes MPI_Status recv_status,*send_status; 2828965ea79SLois Curfman McInnes IS istmp; 2838965ea79SLois Curfman McInnes 284*3a40ed3dSBarry Smith PetscFunctionBegin; 28577c4ece6SBarry Smith ierr = ISGetSize(is,&N); CHKERRQ(ierr); 2868965ea79SLois Curfman McInnes ierr = ISGetIndices(is,&rows); CHKERRQ(ierr); 2878965ea79SLois Curfman McInnes 2888965ea79SLois Curfman McInnes /* first count number of contributors to each processor */ 2890452661fSBarry Smith nprocs = (int *) PetscMalloc( 2*size*sizeof(int) ); CHKPTRQ(nprocs); 290cddf8d76SBarry Smith PetscMemzero(nprocs,2*size*sizeof(int)); procs = nprocs + size; 2910452661fSBarry Smith owner = (int *) PetscMalloc((N+1)*sizeof(int)); CHKPTRQ(owner); /* see note*/ 2928965ea79SLois Curfman McInnes for ( i=0; i<N; i++ ) { 2938965ea79SLois Curfman McInnes idx = rows[i]; 2948965ea79SLois Curfman McInnes found = 0; 2958965ea79SLois Curfman McInnes for ( j=0; j<size; j++ ) { 2968965ea79SLois Curfman McInnes if (idx >= owners[j] && idx < owners[j+1]) { 2978965ea79SLois Curfman McInnes nprocs[j]++; procs[j] = 1; owner[i] = j; found = 1; break; 2988965ea79SLois Curfman McInnes } 2998965ea79SLois Curfman McInnes } 300e3372554SBarry Smith if (!found) SETERRQ(1,0,"Index out of range"); 3018965ea79SLois Curfman McInnes } 3028965ea79SLois Curfman McInnes nsends = 0; for ( i=0; i<size; i++ ) { nsends += procs[i];} 3038965ea79SLois Curfman McInnes 3048965ea79SLois Curfman McInnes /* inform other processors of number of messages and max length*/ 3050452661fSBarry Smith work = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(work); 3068965ea79SLois Curfman McInnes MPI_Allreduce( procs, work,size,MPI_INT,MPI_SUM,comm); 3078965ea79SLois Curfman McInnes nrecvs = work[rank]; 3088965ea79SLois Curfman McInnes MPI_Allreduce( nprocs, work,size,MPI_INT,MPI_MAX,comm); 3098965ea79SLois Curfman McInnes nmax = work[rank]; 3100452661fSBarry Smith PetscFree(work); 3118965ea79SLois Curfman McInnes 3128965ea79SLois Curfman McInnes /* post receives: */ 313*3a40ed3dSBarry Smith rvalues = (int *) PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(int));CHKPTRQ(rvalues); 314*3a40ed3dSBarry Smith recv_waits = (MPI_Request *) PetscMalloc((nrecvs+1)*sizeof(MPI_Request));CHKPTRQ(recv_waits); 3158965ea79SLois Curfman McInnes for ( i=0; i<nrecvs; i++ ) { 3168965ea79SLois Curfman McInnes MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i); 3178965ea79SLois Curfman McInnes } 3188965ea79SLois Curfman McInnes 3198965ea79SLois Curfman McInnes /* do sends: 3208965ea79SLois Curfman McInnes 1) starts[i] gives the starting index in svalues for stuff going to 3218965ea79SLois Curfman McInnes the ith processor 3228965ea79SLois Curfman McInnes */ 3230452661fSBarry Smith svalues = (int *) PetscMalloc( (N+1)*sizeof(int) ); CHKPTRQ(svalues); 3247056b6fcSBarry Smith send_waits = (MPI_Request *) PetscMalloc((nsends+1)*sizeof(MPI_Request));CHKPTRQ(send_waits); 3250452661fSBarry Smith starts = (int *) PetscMalloc( (size+1)*sizeof(int) ); CHKPTRQ(starts); 3268965ea79SLois Curfman McInnes starts[0] = 0; 3278965ea79SLois Curfman McInnes for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 3288965ea79SLois Curfman McInnes for ( i=0; i<N; i++ ) { 3298965ea79SLois Curfman McInnes svalues[starts[owner[i]]++] = rows[i]; 3308965ea79SLois Curfman McInnes } 3318965ea79SLois Curfman McInnes ISRestoreIndices(is,&rows); 3328965ea79SLois Curfman McInnes 3338965ea79SLois Curfman McInnes starts[0] = 0; 3348965ea79SLois Curfman McInnes for ( i=1; i<size+1; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 3358965ea79SLois Curfman McInnes count = 0; 3368965ea79SLois Curfman McInnes for ( i=0; i<size; i++ ) { 3378965ea79SLois Curfman McInnes if (procs[i]) { 3388965ea79SLois Curfman McInnes MPI_Isend(svalues+starts[i],nprocs[i],MPI_INT,i,tag,comm,send_waits+count++); 3398965ea79SLois Curfman McInnes } 3408965ea79SLois Curfman McInnes } 3410452661fSBarry Smith PetscFree(starts); 3428965ea79SLois Curfman McInnes 3438965ea79SLois Curfman McInnes base = owners[rank]; 3448965ea79SLois Curfman McInnes 3458965ea79SLois Curfman McInnes /* wait on receives */ 3460452661fSBarry Smith lens = (int *) PetscMalloc( 2*(nrecvs+1)*sizeof(int) ); CHKPTRQ(lens); 3478965ea79SLois Curfman McInnes source = lens + nrecvs; 3488965ea79SLois Curfman McInnes count = nrecvs; slen = 0; 3498965ea79SLois Curfman McInnes while (count) { 3508965ea79SLois Curfman McInnes MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status); 3518965ea79SLois Curfman McInnes /* unpack receives into our local space */ 3528965ea79SLois Curfman McInnes MPI_Get_count(&recv_status,MPI_INT,&n); 3538965ea79SLois Curfman McInnes source[imdex] = recv_status.MPI_SOURCE; 3548965ea79SLois Curfman McInnes lens[imdex] = n; 3558965ea79SLois Curfman McInnes slen += n; 3568965ea79SLois Curfman McInnes count--; 3578965ea79SLois Curfman McInnes } 3580452661fSBarry Smith PetscFree(recv_waits); 3598965ea79SLois Curfman McInnes 3608965ea79SLois Curfman McInnes /* move the data into the send scatter */ 3610452661fSBarry Smith lrows = (int *) PetscMalloc( (slen+1)*sizeof(int) ); CHKPTRQ(lrows); 3628965ea79SLois Curfman McInnes count = 0; 3638965ea79SLois Curfman McInnes for ( i=0; i<nrecvs; i++ ) { 3648965ea79SLois Curfman McInnes values = rvalues + i*nmax; 3658965ea79SLois Curfman McInnes for ( j=0; j<lens[i]; j++ ) { 3668965ea79SLois Curfman McInnes lrows[count++] = values[j] - base; 3678965ea79SLois Curfman McInnes } 3688965ea79SLois Curfman McInnes } 3690452661fSBarry Smith PetscFree(rvalues); PetscFree(lens); 3700452661fSBarry Smith PetscFree(owner); PetscFree(nprocs); 3718965ea79SLois Curfman McInnes 3728965ea79SLois Curfman McInnes /* actually zap the local rows */ 373029af93fSBarry Smith ierr = ISCreateGeneral(PETSC_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr); 3748965ea79SLois Curfman McInnes PLogObjectParent(A,istmp); 3750452661fSBarry Smith PetscFree(lrows); 3768965ea79SLois Curfman McInnes ierr = MatZeroRows(l->A,istmp,diag); CHKERRQ(ierr); 3778965ea79SLois Curfman McInnes ierr = ISDestroy(istmp); CHKERRQ(ierr); 3788965ea79SLois Curfman McInnes 3798965ea79SLois Curfman McInnes /* wait on sends */ 3808965ea79SLois Curfman McInnes if (nsends) { 3817056b6fcSBarry Smith send_status = (MPI_Status *) PetscMalloc(nsends*sizeof(MPI_Status));CHKPTRQ(send_status); 3828965ea79SLois Curfman McInnes MPI_Waitall(nsends,send_waits,send_status); 3830452661fSBarry Smith PetscFree(send_status); 3848965ea79SLois Curfman McInnes } 3850452661fSBarry Smith PetscFree(send_waits); PetscFree(svalues); 3868965ea79SLois Curfman McInnes 387*3a40ed3dSBarry Smith PetscFunctionReturn(0); 3888965ea79SLois Curfman McInnes } 3898965ea79SLois Curfman McInnes 3905615d1e5SSatish Balay #undef __FUNC__ 3915615d1e5SSatish Balay #define __FUNC__ "MatMult_MPIDense" 3928f6be9afSLois Curfman McInnes int MatMult_MPIDense(Mat mat,Vec xx,Vec yy) 3938965ea79SLois Curfman McInnes { 39439ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data; 3958965ea79SLois Curfman McInnes int ierr; 396c456f294SBarry Smith 397*3a40ed3dSBarry Smith PetscFunctionBegin; 39843a90d84SBarry Smith ierr = VecScatterBegin(xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD,mdn->Mvctx);CHKERRQ(ierr); 39943a90d84SBarry Smith ierr = VecScatterEnd(xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD,mdn->Mvctx);CHKERRQ(ierr); 40044cd7ae7SLois Curfman McInnes ierr = MatMult_SeqDense(mdn->A,mdn->lvec,yy); CHKERRQ(ierr); 401*3a40ed3dSBarry Smith PetscFunctionReturn(0); 4028965ea79SLois Curfman McInnes } 4038965ea79SLois Curfman McInnes 4045615d1e5SSatish Balay #undef __FUNC__ 4055615d1e5SSatish Balay #define __FUNC__ "MatMultAdd_MPIDense" 4068f6be9afSLois Curfman McInnes int MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz) 4078965ea79SLois Curfman McInnes { 40839ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data; 4098965ea79SLois Curfman McInnes int ierr; 410c456f294SBarry Smith 411*3a40ed3dSBarry Smith PetscFunctionBegin; 41243a90d84SBarry Smith ierr = VecScatterBegin(xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD,mdn->Mvctx);CHKERRQ(ierr); 41343a90d84SBarry Smith ierr = VecScatterEnd(xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD,mdn->Mvctx);CHKERRQ(ierr); 41444cd7ae7SLois Curfman McInnes ierr = MatMultAdd_SeqDense(mdn->A,mdn->lvec,yy,zz); CHKERRQ(ierr); 415*3a40ed3dSBarry Smith PetscFunctionReturn(0); 4168965ea79SLois Curfman McInnes } 4178965ea79SLois Curfman McInnes 4185615d1e5SSatish Balay #undef __FUNC__ 4195615d1e5SSatish Balay #define __FUNC__ "MatMultTrans_MPIDense" 4208f6be9afSLois Curfman McInnes int MatMultTrans_MPIDense(Mat A,Vec xx,Vec yy) 421096963f5SLois Curfman McInnes { 422096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense *) A->data; 423096963f5SLois Curfman McInnes int ierr; 4243501a2bdSLois Curfman McInnes Scalar zero = 0.0; 425096963f5SLois Curfman McInnes 426*3a40ed3dSBarry Smith PetscFunctionBegin; 4273501a2bdSLois Curfman McInnes ierr = VecSet(&zero,yy); CHKERRQ(ierr); 42844cd7ae7SLois Curfman McInnes ierr = MatMultTrans_SeqDense(a->A,xx,a->lvec); CHKERRQ(ierr); 429537820f0SBarry Smith ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr); 430537820f0SBarry Smith ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr); 431*3a40ed3dSBarry Smith PetscFunctionReturn(0); 432096963f5SLois Curfman McInnes } 433096963f5SLois Curfman McInnes 4345615d1e5SSatish Balay #undef __FUNC__ 4355615d1e5SSatish Balay #define __FUNC__ "MatMultTransAdd_MPIDense" 4368f6be9afSLois Curfman McInnes int MatMultTransAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz) 437096963f5SLois Curfman McInnes { 438096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense *) A->data; 439096963f5SLois Curfman McInnes int ierr; 440096963f5SLois Curfman McInnes 441*3a40ed3dSBarry Smith PetscFunctionBegin; 4423501a2bdSLois Curfman McInnes ierr = VecCopy(yy,zz); CHKERRQ(ierr); 44344cd7ae7SLois Curfman McInnes ierr = MatMultTrans_SeqDense(a->A,xx,a->lvec); CHKERRQ(ierr); 444537820f0SBarry Smith ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr); 445537820f0SBarry Smith ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr); 446*3a40ed3dSBarry Smith PetscFunctionReturn(0); 447096963f5SLois Curfman McInnes } 448096963f5SLois Curfman McInnes 4495615d1e5SSatish Balay #undef __FUNC__ 4505615d1e5SSatish Balay #define __FUNC__ "MatGetDiagonal_MPIDense" 4518f6be9afSLois Curfman McInnes int MatGetDiagonal_MPIDense(Mat A,Vec v) 4528965ea79SLois Curfman McInnes { 45339ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense *) A->data; 454096963f5SLois Curfman McInnes Mat_SeqDense *aloc = (Mat_SeqDense *) a->A->data; 45544cd7ae7SLois Curfman McInnes int ierr, len, i, n, m = a->m, radd; 45644cd7ae7SLois Curfman McInnes Scalar *x, zero = 0.0; 457ed3cc1f0SBarry Smith 458*3a40ed3dSBarry Smith PetscFunctionBegin; 45944cd7ae7SLois Curfman McInnes VecSet(&zero,v); 460096963f5SLois Curfman McInnes ierr = VecGetArray(v,&x); CHKERRQ(ierr); 461096963f5SLois Curfman McInnes ierr = VecGetSize(v,&n); CHKERRQ(ierr); 462e3372554SBarry Smith if (n != a->M) SETERRQ(1,0,"Nonconforming mat and vec"); 46344cd7ae7SLois Curfman McInnes len = PetscMin(aloc->m,aloc->n); 4647ddc982cSLois Curfman McInnes radd = a->rstart*m; 46544cd7ae7SLois Curfman McInnes for ( i=0; i<len; i++ ) { 466096963f5SLois Curfman McInnes x[i] = aloc->v[radd + i*m + i]; 467096963f5SLois Curfman McInnes } 468*3a40ed3dSBarry Smith PetscFunctionReturn(0); 4698965ea79SLois Curfman McInnes } 4708965ea79SLois Curfman McInnes 4715615d1e5SSatish Balay #undef __FUNC__ 4725615d1e5SSatish Balay #define __FUNC__ "MatDestroy_MPIDense" 4738f6be9afSLois Curfman McInnes int MatDestroy_MPIDense(PetscObject obj) 4748965ea79SLois Curfman McInnes { 4758965ea79SLois Curfman McInnes Mat mat = (Mat) obj; 4763501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data; 4778965ea79SLois Curfman McInnes int ierr; 478ed3cc1f0SBarry Smith 479*3a40ed3dSBarry Smith PetscFunctionBegin; 480*3a40ed3dSBarry Smith #if defined(USE_PETSC_LOG) 4813501a2bdSLois Curfman McInnes PLogObjectState(obj,"Rows=%d, Cols=%d",mdn->M,mdn->N); 4828965ea79SLois Curfman McInnes #endif 4830452661fSBarry Smith PetscFree(mdn->rowners); 4843501a2bdSLois Curfman McInnes ierr = MatDestroy(mdn->A); CHKERRQ(ierr); 4853501a2bdSLois Curfman McInnes if (mdn->lvec) VecDestroy(mdn->lvec); 4863501a2bdSLois Curfman McInnes if (mdn->Mvctx) VecScatterDestroy(mdn->Mvctx); 487622d7880SLois Curfman McInnes if (mdn->factor) { 488622d7880SLois Curfman McInnes if (mdn->factor->temp) PetscFree(mdn->factor->temp); 489622d7880SLois Curfman McInnes if (mdn->factor->tag) PetscFree(mdn->factor->tag); 490622d7880SLois Curfman McInnes if (mdn->factor->pivots) PetscFree(mdn->factor->pivots); 491622d7880SLois Curfman McInnes PetscFree(mdn->factor); 492622d7880SLois Curfman McInnes } 4930452661fSBarry Smith PetscFree(mdn); 49490f02eecSBarry Smith if (mat->mapping) { 49590f02eecSBarry Smith ierr = ISLocalToGlobalMappingDestroy(mat->mapping); CHKERRQ(ierr); 49690f02eecSBarry Smith } 4978965ea79SLois Curfman McInnes PLogObjectDestroy(mat); 4980452661fSBarry Smith PetscHeaderDestroy(mat); 499*3a40ed3dSBarry Smith PetscFunctionReturn(0); 5008965ea79SLois Curfman McInnes } 50139ddd567SLois Curfman McInnes 5028965ea79SLois Curfman McInnes #include "pinclude/pviewer.h" 5038965ea79SLois Curfman McInnes 5045615d1e5SSatish Balay #undef __FUNC__ 5055615d1e5SSatish Balay #define __FUNC__ "MatView_MPIDense_Binary" 50639ddd567SLois Curfman McInnes static int MatView_MPIDense_Binary(Mat mat,Viewer viewer) 5078965ea79SLois Curfman McInnes { 50839ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data; 5098965ea79SLois Curfman McInnes int ierr; 5107056b6fcSBarry Smith 511*3a40ed3dSBarry Smith PetscFunctionBegin; 51239ddd567SLois Curfman McInnes if (mdn->size == 1) { 51339ddd567SLois Curfman McInnes ierr = MatView(mdn->A,viewer); CHKERRQ(ierr); 5148965ea79SLois Curfman McInnes } 515e3372554SBarry Smith else SETERRQ(1,0,"Only uniprocessor output supported"); 516*3a40ed3dSBarry Smith PetscFunctionReturn(0); 5178965ea79SLois Curfman McInnes } 5188965ea79SLois Curfman McInnes 5195615d1e5SSatish Balay #undef __FUNC__ 5205615d1e5SSatish Balay #define __FUNC__ "MatView_MPIDense_ASCII" 52139ddd567SLois Curfman McInnes static int MatView_MPIDense_ASCII(Mat mat,Viewer viewer) 5228965ea79SLois Curfman McInnes { 52339ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data; 52439ddd567SLois Curfman McInnes int ierr, format; 5258965ea79SLois Curfman McInnes FILE *fd; 52619bcc07fSBarry Smith ViewerType vtype; 5278965ea79SLois Curfman McInnes 528*3a40ed3dSBarry Smith PetscFunctionBegin; 529*3a40ed3dSBarry Smith ierr = ViewerGetType(viewer,&vtype);CHKERRQ(ierr); 53090ace30eSBarry Smith ierr = ViewerASCIIGetPointer(viewer,&fd); CHKERRQ(ierr); 53190ace30eSBarry Smith ierr = ViewerGetFormat(viewer,&format); 532639f9d9dSBarry Smith if (format == VIEWER_FORMAT_ASCII_INFO_LONG) { 5334e220ebcSLois Curfman McInnes int rank; 5344e220ebcSLois Curfman McInnes MatInfo info; 535096963f5SLois Curfman McInnes MPI_Comm_rank(mat->comm,&rank); 5364e220ebcSLois Curfman McInnes ierr = MatGetInfo(mat,MAT_LOCAL,&info); 53777c4ece6SBarry Smith PetscSequentialPhaseBegin(mat->comm,1); 5384e220ebcSLois Curfman McInnes fprintf(fd," [%d] local rows %d nz %d nz alloced %d mem %d \n",rank,mdn->m, 5394e220ebcSLois Curfman McInnes (int)info.nz_used,(int)info.nz_allocated,(int)info.memory); 540096963f5SLois Curfman McInnes fflush(fd); 54177c4ece6SBarry Smith PetscSequentialPhaseEnd(mat->comm,1); 5423501a2bdSLois Curfman McInnes ierr = VecScatterView(mdn->Mvctx,viewer); CHKERRQ(ierr); 543*3a40ed3dSBarry Smith PetscFunctionReturn(0); 5443501a2bdSLois Curfman McInnes } 54502cad45dSBarry Smith else if (format == VIEWER_FORMAT_ASCII_INFO) { 546*3a40ed3dSBarry Smith PetscFunctionReturn(0); 5478965ea79SLois Curfman McInnes } 54819bcc07fSBarry Smith if (vtype == ASCII_FILE_VIEWER) { 54977c4ece6SBarry Smith PetscSequentialPhaseBegin(mat->comm,1); 55039ddd567SLois Curfman McInnes fprintf(fd,"[%d] rows %d starts %d ends %d cols %d\n", 55139ddd567SLois Curfman McInnes mdn->rank,mdn->m,mdn->rstart,mdn->rend,mdn->n); 55239ddd567SLois Curfman McInnes ierr = MatView(mdn->A,viewer); CHKERRQ(ierr); 5538965ea79SLois Curfman McInnes fflush(fd); 55477c4ece6SBarry Smith PetscSequentialPhaseEnd(mat->comm,1); 555*3a40ed3dSBarry Smith } else { 55639ddd567SLois Curfman McInnes int size = mdn->size, rank = mdn->rank; 5578965ea79SLois Curfman McInnes if (size == 1) { 55839ddd567SLois Curfman McInnes ierr = MatView(mdn->A,viewer); CHKERRQ(ierr); 559*3a40ed3dSBarry Smith } else { 5608965ea79SLois Curfman McInnes /* assemble the entire matrix onto first processor. */ 5618965ea79SLois Curfman McInnes Mat A; 56239ddd567SLois Curfman McInnes int M = mdn->M, N = mdn->N,m,row,i, nz, *cols; 56339ddd567SLois Curfman McInnes Scalar *vals; 56439ddd567SLois Curfman McInnes Mat_SeqDense *Amdn = (Mat_SeqDense*) mdn->A->data; 5658965ea79SLois Curfman McInnes 5668965ea79SLois Curfman McInnes if (!rank) { 5670513a670SBarry Smith ierr = MatCreateMPIDense(mat->comm,M,N,M,N,PETSC_NULL,&A); CHKERRQ(ierr); 568*3a40ed3dSBarry Smith } else { 5690513a670SBarry Smith ierr = MatCreateMPIDense(mat->comm,0,N,M,N,PETSC_NULL,&A); CHKERRQ(ierr); 5708965ea79SLois Curfman McInnes } 5718965ea79SLois Curfman McInnes PLogObjectParent(mat,A); 5728965ea79SLois Curfman McInnes 57339ddd567SLois Curfman McInnes /* Copy the matrix ... This isn't the most efficient means, 57439ddd567SLois Curfman McInnes but it's quick for now */ 57539ddd567SLois Curfman McInnes row = mdn->rstart; m = Amdn->m; 5768965ea79SLois Curfman McInnes for ( i=0; i<m; i++ ) { 57739ddd567SLois Curfman McInnes ierr = MatGetRow(mat,row,&nz,&cols,&vals); CHKERRQ(ierr); 57839ddd567SLois Curfman McInnes ierr = MatSetValues(A,1,&row,nz,cols,vals,INSERT_VALUES); CHKERRQ(ierr); 57939ddd567SLois Curfman McInnes ierr = MatRestoreRow(mat,row,&nz,&cols,&vals); CHKERRQ(ierr); 58039ddd567SLois Curfman McInnes row++; 5818965ea79SLois Curfman McInnes } 5828965ea79SLois Curfman McInnes 5836d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 5846d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 5858965ea79SLois Curfman McInnes if (!rank) { 58639ddd567SLois Curfman McInnes ierr = MatView(((Mat_MPIDense*)(A->data))->A,viewer); CHKERRQ(ierr); 5878965ea79SLois Curfman McInnes } 5888965ea79SLois Curfman McInnes ierr = MatDestroy(A); CHKERRQ(ierr); 5898965ea79SLois Curfman McInnes } 5908965ea79SLois Curfman McInnes } 591*3a40ed3dSBarry Smith PetscFunctionReturn(0); 5928965ea79SLois Curfman McInnes } 5938965ea79SLois Curfman McInnes 5945615d1e5SSatish Balay #undef __FUNC__ 5955615d1e5SSatish Balay #define __FUNC__ "MatView_MPIDense" 5968f6be9afSLois Curfman McInnes int MatView_MPIDense(PetscObject obj,Viewer viewer) 5978965ea79SLois Curfman McInnes { 5988965ea79SLois Curfman McInnes Mat mat = (Mat) obj; 59939ddd567SLois Curfman McInnes int ierr; 600bcd2baecSBarry Smith ViewerType vtype; 6018965ea79SLois Curfman McInnes 602bcd2baecSBarry Smith ierr = ViewerGetType(viewer,&vtype); CHKERRQ(ierr); 603bcd2baecSBarry Smith if (vtype == ASCII_FILE_VIEWER) { 60439ddd567SLois Curfman McInnes ierr = MatView_MPIDense_ASCII(mat,viewer); CHKERRQ(ierr); 605*3a40ed3dSBarry Smith } else if (vtype == ASCII_FILES_VIEWER) { 60639ddd567SLois Curfman McInnes ierr = MatView_MPIDense_ASCII(mat,viewer); CHKERRQ(ierr); 607*3a40ed3dSBarry Smith } else if (vtype == BINARY_FILE_VIEWER) { 608*3a40ed3dSBarry Smith ierr = MatView_MPIDense_Binary(mat,viewer);CHKERRQ(ierr); 6098965ea79SLois Curfman McInnes } 610*3a40ed3dSBarry Smith PetscFunctionReturn(0); 6118965ea79SLois Curfman McInnes } 6128965ea79SLois Curfman McInnes 6135615d1e5SSatish Balay #undef __FUNC__ 6145615d1e5SSatish Balay #define __FUNC__ "MatGetInfo_MPIDense" 6158f6be9afSLois Curfman McInnes int MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info) 6168965ea79SLois Curfman McInnes { 6173501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense *) A->data; 6183501a2bdSLois Curfman McInnes Mat mdn = mat->A; 6194e220ebcSLois Curfman McInnes int ierr; 6204e220ebcSLois Curfman McInnes double isend[5], irecv[5]; 6218965ea79SLois Curfman McInnes 622*3a40ed3dSBarry Smith PetscFunctionBegin; 6234e220ebcSLois Curfman McInnes info->rows_global = (double)mat->M; 6244e220ebcSLois Curfman McInnes info->columns_global = (double)mat->N; 6254e220ebcSLois Curfman McInnes info->rows_local = (double)mat->m; 6264e220ebcSLois Curfman McInnes info->columns_local = (double)mat->N; 6274e220ebcSLois Curfman McInnes info->block_size = 1.0; 6284e220ebcSLois Curfman McInnes ierr = MatGetInfo(mdn,MAT_LOCAL,info); CHKERRQ(ierr); 6294e220ebcSLois Curfman McInnes isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 6304e220ebcSLois Curfman McInnes isend[3] = info->memory; isend[4] = info->mallocs; 6318965ea79SLois Curfman McInnes if (flag == MAT_LOCAL) { 6324e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 6334e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 6344e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 6354e220ebcSLois Curfman McInnes info->memory = isend[3]; 6364e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 6378965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 638dd2c0978SLois Curfman McInnes MPI_Allreduce(isend,irecv,5,MPI_INT,MPI_MAX,A->comm); 6394e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 6404e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 6414e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 6424e220ebcSLois Curfman McInnes info->memory = irecv[3]; 6434e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 6448965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 645dd2c0978SLois Curfman McInnes MPI_Allreduce(isend,irecv,5,MPI_INT,MPI_SUM,A->comm); 6464e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 6474e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 6484e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 6494e220ebcSLois Curfman McInnes info->memory = irecv[3]; 6504e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 6518965ea79SLois Curfman McInnes } 6524e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 6534e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 6544e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 655*3a40ed3dSBarry Smith PetscFunctionReturn(0); 6568965ea79SLois Curfman McInnes } 6578965ea79SLois Curfman McInnes 6588c469469SLois Curfman McInnes /* extern int MatLUFactorSymbolic_MPIDense(Mat,IS,IS,double,Mat*); 6598aaee692SLois Curfman McInnes extern int MatLUFactorNumeric_MPIDense(Mat,Mat*); 6608aaee692SLois Curfman McInnes extern int MatLUFactor_MPIDense(Mat,IS,IS,double); 6618aaee692SLois Curfman McInnes extern int MatSolve_MPIDense(Mat,Vec,Vec); 6628c469469SLois Curfman McInnes extern int MatSolveAdd_MPIDense(Mat,Vec,Vec,Vec); 6638aaee692SLois Curfman McInnes extern int MatSolveTrans_MPIDense(Mat,Vec,Vec); 6648aaee692SLois Curfman McInnes extern int MatSolveTransAdd_MPIDense(Mat,Vec,Vec,Vec); */ 6658aaee692SLois Curfman McInnes 6665615d1e5SSatish Balay #undef __FUNC__ 6675615d1e5SSatish Balay #define __FUNC__ "MatSetOption_MPIDense" 6688f6be9afSLois Curfman McInnes int MatSetOption_MPIDense(Mat A,MatOption op) 6698965ea79SLois Curfman McInnes { 67039ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense *) A->data; 6718965ea79SLois Curfman McInnes 672*3a40ed3dSBarry Smith PetscFunctionBegin; 6736d4a8577SBarry Smith if (op == MAT_NO_NEW_NONZERO_LOCATIONS || 6746d4a8577SBarry Smith op == MAT_YES_NEW_NONZERO_LOCATIONS || 675c2653b3dSLois Curfman McInnes op == MAT_NEW_NONZERO_LOCATION_ERROR || 67696854ed6SLois Curfman McInnes op == MAT_NEW_NONZERO_ALLOCATION_ERROR || 677219d9a1aSLois Curfman McInnes op == MAT_COLUMNS_SORTED || 678219d9a1aSLois Curfman McInnes op == MAT_COLUMNS_UNSORTED) { 679b1fbbac0SLois Curfman McInnes MatSetOption(a->A,op); 680b1fbbac0SLois Curfman McInnes } else if (op == MAT_ROW_ORIENTED) { 681aeafbbfcSLois Curfman McInnes a->roworiented = 1; 6828965ea79SLois Curfman McInnes MatSetOption(a->A,op); 683b1fbbac0SLois Curfman McInnes } else if (op == MAT_ROWS_SORTED || 684219d9a1aSLois Curfman McInnes op == MAT_ROWS_UNSORTED || 6856d4a8577SBarry Smith op == MAT_SYMMETRIC || 6866d4a8577SBarry Smith op == MAT_STRUCTURALLY_SYMMETRIC || 687*3a40ed3dSBarry Smith op == MAT_YES_NEW_DIAGONALS) { 68894a424c1SBarry Smith PLogInfo(A,"Info:MatSetOption_MPIDense:Option ignored\n"); 689*3a40ed3dSBarry Smith } else if (op == MAT_COLUMN_ORIENTED) { 690*3a40ed3dSBarry Smith a->roworiented = 0; MatSetOption(a->A,op); 691*3a40ed3dSBarry Smith } else if (op == MAT_NO_NEW_DIAGONALS) { 692*3a40ed3dSBarry Smith SETERRQ(PETSC_ERR_SUP,0,"MAT_NO_NEW_DIAGONALS"); 693*3a40ed3dSBarry Smith } else { 694*3a40ed3dSBarry Smith SETERRQ(PETSC_ERR_SUP,0,"unknown option"); 695*3a40ed3dSBarry Smith } 696*3a40ed3dSBarry Smith PetscFunctionReturn(0); 6978965ea79SLois Curfman McInnes } 6988965ea79SLois Curfman McInnes 6995615d1e5SSatish Balay #undef __FUNC__ 7005615d1e5SSatish Balay #define __FUNC__ "MatGetSize_MPIDense" 7018f6be9afSLois Curfman McInnes int MatGetSize_MPIDense(Mat A,int *m,int *n) 7028965ea79SLois Curfman McInnes { 7033501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense *) A->data; 704*3a40ed3dSBarry Smith 705*3a40ed3dSBarry Smith PetscFunctionBegin; 7068965ea79SLois Curfman McInnes *m = mat->M; *n = mat->N; 707*3a40ed3dSBarry Smith PetscFunctionReturn(0); 7088965ea79SLois Curfman McInnes } 7098965ea79SLois Curfman McInnes 7105615d1e5SSatish Balay #undef __FUNC__ 7115615d1e5SSatish Balay #define __FUNC__ "MatGetLocalSize_MPIDense" 7128f6be9afSLois Curfman McInnes int MatGetLocalSize_MPIDense(Mat A,int *m,int *n) 7138965ea79SLois Curfman McInnes { 7143501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense *) A->data; 715*3a40ed3dSBarry Smith 716*3a40ed3dSBarry Smith PetscFunctionBegin; 7178965ea79SLois Curfman McInnes *m = mat->m; *n = mat->N; 718*3a40ed3dSBarry Smith PetscFunctionReturn(0); 7198965ea79SLois Curfman McInnes } 7208965ea79SLois Curfman McInnes 7215615d1e5SSatish Balay #undef __FUNC__ 7225615d1e5SSatish Balay #define __FUNC__ "MatGetOwnershipRange_MPIDense" 7238f6be9afSLois Curfman McInnes int MatGetOwnershipRange_MPIDense(Mat A,int *m,int *n) 7248965ea79SLois Curfman McInnes { 7253501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense *) A->data; 726*3a40ed3dSBarry Smith 727*3a40ed3dSBarry Smith PetscFunctionBegin; 7288965ea79SLois Curfman McInnes *m = mat->rstart; *n = mat->rend; 729*3a40ed3dSBarry Smith PetscFunctionReturn(0); 7308965ea79SLois Curfman McInnes } 7318965ea79SLois Curfman McInnes 7325615d1e5SSatish Balay #undef __FUNC__ 7335615d1e5SSatish Balay #define __FUNC__ "MatGetRow_MPIDense" 7348f6be9afSLois Curfman McInnes int MatGetRow_MPIDense(Mat A,int row,int *nz,int **idx,Scalar **v) 7358965ea79SLois Curfman McInnes { 7363501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense *) A->data; 737*3a40ed3dSBarry Smith int lrow, rstart = mat->rstart, rend = mat->rend,ierr; 7388965ea79SLois Curfman McInnes 739*3a40ed3dSBarry Smith PetscFunctionBegin; 740e3372554SBarry Smith if (row < rstart || row >= rend) SETERRQ(1,0,"only local rows") 7418965ea79SLois Curfman McInnes lrow = row - rstart; 742*3a40ed3dSBarry Smith ierr = MatGetRow(mat->A,lrow,nz,idx,v);CHKERRQ(ierr); 743*3a40ed3dSBarry Smith PetscFunctionReturn(0); 7448965ea79SLois Curfman McInnes } 7458965ea79SLois Curfman McInnes 7465615d1e5SSatish Balay #undef __FUNC__ 7475615d1e5SSatish Balay #define __FUNC__ "MatRestoreRow_MPIDense" 7488f6be9afSLois Curfman McInnes int MatRestoreRow_MPIDense(Mat mat,int row,int *nz,int **idx,Scalar **v) 7498965ea79SLois Curfman McInnes { 750*3a40ed3dSBarry Smith PetscFunctionBegin; 7510452661fSBarry Smith if (idx) PetscFree(*idx); 7520452661fSBarry Smith if (v) PetscFree(*v); 753*3a40ed3dSBarry Smith PetscFunctionReturn(0); 7548965ea79SLois Curfman McInnes } 7558965ea79SLois Curfman McInnes 7565615d1e5SSatish Balay #undef __FUNC__ 7575615d1e5SSatish Balay #define __FUNC__ "MatNorm_MPIDense" 7588f6be9afSLois Curfman McInnes int MatNorm_MPIDense(Mat A,NormType type,double *norm) 759096963f5SLois Curfman McInnes { 7603501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *) A->data; 7613501a2bdSLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*) mdn->A->data; 7623501a2bdSLois Curfman McInnes int ierr, i, j; 7633501a2bdSLois Curfman McInnes double sum = 0.0; 7643501a2bdSLois Curfman McInnes Scalar *v = mat->v; 7653501a2bdSLois Curfman McInnes 766*3a40ed3dSBarry Smith PetscFunctionBegin; 7673501a2bdSLois Curfman McInnes if (mdn->size == 1) { 7683501a2bdSLois Curfman McInnes ierr = MatNorm(mdn->A,type,norm); CHKERRQ(ierr); 7693501a2bdSLois Curfman McInnes } else { 7703501a2bdSLois Curfman McInnes if (type == NORM_FROBENIUS) { 7713501a2bdSLois Curfman McInnes for (i=0; i<mat->n*mat->m; i++ ) { 772*3a40ed3dSBarry Smith #if defined(USE_PETSC_COMPLEX) 7733501a2bdSLois Curfman McInnes sum += real(conj(*v)*(*v)); v++; 7743501a2bdSLois Curfman McInnes #else 7753501a2bdSLois Curfman McInnes sum += (*v)*(*v); v++; 7763501a2bdSLois Curfman McInnes #endif 7773501a2bdSLois Curfman McInnes } 7786d84be18SBarry Smith MPI_Allreduce(&sum,norm,1,MPI_DOUBLE,MPI_SUM,A->comm); 7793501a2bdSLois Curfman McInnes *norm = sqrt(*norm); 7803501a2bdSLois Curfman McInnes PLogFlops(2*mat->n*mat->m); 781*3a40ed3dSBarry Smith } else if (type == NORM_1) { 7823501a2bdSLois Curfman McInnes double *tmp, *tmp2; 7830452661fSBarry Smith tmp = (double *) PetscMalloc( 2*mdn->N*sizeof(double) ); CHKPTRQ(tmp); 7843501a2bdSLois Curfman McInnes tmp2 = tmp + mdn->N; 785cddf8d76SBarry Smith PetscMemzero(tmp,2*mdn->N*sizeof(double)); 786096963f5SLois Curfman McInnes *norm = 0.0; 7873501a2bdSLois Curfman McInnes v = mat->v; 7883501a2bdSLois Curfman McInnes for ( j=0; j<mat->n; j++ ) { 7893501a2bdSLois Curfman McInnes for ( i=0; i<mat->m; i++ ) { 79067e560aaSBarry Smith tmp[j] += PetscAbsScalar(*v); v++; 7913501a2bdSLois Curfman McInnes } 7923501a2bdSLois Curfman McInnes } 7936d84be18SBarry Smith MPI_Allreduce(tmp,tmp2,mdn->N,MPI_DOUBLE,MPI_SUM,A->comm); 7943501a2bdSLois Curfman McInnes for ( j=0; j<mdn->N; j++ ) { 7953501a2bdSLois Curfman McInnes if (tmp2[j] > *norm) *norm = tmp2[j]; 7963501a2bdSLois Curfman McInnes } 7970452661fSBarry Smith PetscFree(tmp); 7983501a2bdSLois Curfman McInnes PLogFlops(mat->n*mat->m); 799*3a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 8003501a2bdSLois Curfman McInnes double ntemp; 8013501a2bdSLois Curfman McInnes ierr = MatNorm(mdn->A,type,&ntemp); CHKERRQ(ierr); 8026d84be18SBarry Smith MPI_Allreduce(&ntemp,norm,1,MPI_DOUBLE,MPI_MAX,A->comm); 803*3a40ed3dSBarry Smith } else { 804e3372554SBarry Smith SETERRQ(1,0,"No support for two norm"); 8053501a2bdSLois Curfman McInnes } 8063501a2bdSLois Curfman McInnes } 807*3a40ed3dSBarry Smith PetscFunctionReturn(0); 8083501a2bdSLois Curfman McInnes } 8093501a2bdSLois Curfman McInnes 8105615d1e5SSatish Balay #undef __FUNC__ 8115615d1e5SSatish Balay #define __FUNC__ "MatTranspose_MPIDense" 8128f6be9afSLois Curfman McInnes int MatTranspose_MPIDense(Mat A,Mat *matout) 8133501a2bdSLois Curfman McInnes { 8143501a2bdSLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense *) A->data; 8153501a2bdSLois Curfman McInnes Mat_SeqDense *Aloc = (Mat_SeqDense *) a->A->data; 8163501a2bdSLois Curfman McInnes Mat B; 8173501a2bdSLois Curfman McInnes int M = a->M, N = a->N, m, n, *rwork, rstart = a->rstart; 8183501a2bdSLois Curfman McInnes int j, i, ierr; 8193501a2bdSLois Curfman McInnes Scalar *v; 8203501a2bdSLois Curfman McInnes 821*3a40ed3dSBarry Smith PetscFunctionBegin; 8227056b6fcSBarry Smith if (matout == PETSC_NULL && M != N) { 823e3372554SBarry Smith SETERRQ(1,0,"Supports square matrix only in-place"); 8247056b6fcSBarry Smith } 8257056b6fcSBarry Smith ierr = MatCreateMPIDense(A->comm,PETSC_DECIDE,PETSC_DECIDE,N,M,PETSC_NULL,&B);CHKERRQ(ierr); 8263501a2bdSLois Curfman McInnes 8273501a2bdSLois Curfman McInnes m = Aloc->m; n = Aloc->n; v = Aloc->v; 8280452661fSBarry Smith rwork = (int *) PetscMalloc(n*sizeof(int)); CHKPTRQ(rwork); 8293501a2bdSLois Curfman McInnes for ( j=0; j<n; j++ ) { 8303501a2bdSLois Curfman McInnes for (i=0; i<m; i++) rwork[i] = rstart + i; 8313501a2bdSLois Curfman McInnes ierr = MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES); CHKERRQ(ierr); 8323501a2bdSLois Curfman McInnes v += m; 8333501a2bdSLois Curfman McInnes } 8340452661fSBarry Smith PetscFree(rwork); 8356d4a8577SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 8366d4a8577SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 8373638b69dSLois Curfman McInnes if (matout != PETSC_NULL) { 8383501a2bdSLois Curfman McInnes *matout = B; 8393501a2bdSLois Curfman McInnes } else { 8403501a2bdSLois Curfman McInnes /* This isn't really an in-place transpose, but free data struct from a */ 8410452661fSBarry Smith PetscFree(a->rowners); 8423501a2bdSLois Curfman McInnes ierr = MatDestroy(a->A); CHKERRQ(ierr); 8433501a2bdSLois Curfman McInnes if (a->lvec) VecDestroy(a->lvec); 8443501a2bdSLois Curfman McInnes if (a->Mvctx) VecScatterDestroy(a->Mvctx); 8450452661fSBarry Smith PetscFree(a); 846f09e8eb9SSatish Balay PetscMemcpy(A,B,sizeof(struct _p_Mat)); 8470452661fSBarry Smith PetscHeaderDestroy(B); 8483501a2bdSLois Curfman McInnes } 849*3a40ed3dSBarry Smith PetscFunctionReturn(0); 850096963f5SLois Curfman McInnes } 851096963f5SLois Curfman McInnes 85244cd7ae7SLois Curfman McInnes #include "pinclude/plapack.h" 8535615d1e5SSatish Balay #undef __FUNC__ 8545615d1e5SSatish Balay #define __FUNC__ "MatScale_MPIDense" 8558f6be9afSLois Curfman McInnes int MatScale_MPIDense(Scalar *alpha,Mat inA) 85644cd7ae7SLois Curfman McInnes { 85744cd7ae7SLois Curfman McInnes Mat_MPIDense *A = (Mat_MPIDense *) inA->data; 85844cd7ae7SLois Curfman McInnes Mat_SeqDense *a = (Mat_SeqDense *) A->A->data; 85944cd7ae7SLois Curfman McInnes int one = 1, nz; 86044cd7ae7SLois Curfman McInnes 861*3a40ed3dSBarry Smith PetscFunctionBegin; 86244cd7ae7SLois Curfman McInnes nz = a->m*a->n; 86344cd7ae7SLois Curfman McInnes BLscal_( &nz, alpha, a->v, &one ); 86444cd7ae7SLois Curfman McInnes PLogFlops(nz); 865*3a40ed3dSBarry Smith PetscFunctionReturn(0); 86644cd7ae7SLois Curfman McInnes } 86744cd7ae7SLois Curfman McInnes 8683d1612f7SBarry Smith static int MatConvertSameType_MPIDense(Mat,Mat *,int); 8698965ea79SLois Curfman McInnes 8708965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/ 87139ddd567SLois Curfman McInnes static struct _MatOps MatOps = {MatSetValues_MPIDense, 87239ddd567SLois Curfman McInnes MatGetRow_MPIDense,MatRestoreRow_MPIDense, 87339ddd567SLois Curfman McInnes MatMult_MPIDense,MatMultAdd_MPIDense, 874096963f5SLois Curfman McInnes MatMultTrans_MPIDense,MatMultTransAdd_MPIDense, 875e7ca0642SLois Curfman McInnes /* MatSolve_MPIDense,0, */ 876e7ca0642SLois Curfman McInnes 0,0, 87739ddd567SLois Curfman McInnes 0,0, 8788c469469SLois Curfman McInnes 0,0, 8798c469469SLois Curfman McInnes /* MatLUFactor_MPIDense,0, */ 8808aaee692SLois Curfman McInnes 0,MatTranspose_MPIDense, 88139ddd567SLois Curfman McInnes MatGetInfo_MPIDense,0, 882096963f5SLois Curfman McInnes MatGetDiagonal_MPIDense,0,MatNorm_MPIDense, 88339ddd567SLois Curfman McInnes MatAssemblyBegin_MPIDense,MatAssemblyEnd_MPIDense, 8848965ea79SLois Curfman McInnes 0, 88539ddd567SLois Curfman McInnes MatSetOption_MPIDense,MatZeroEntries_MPIDense,MatZeroRows_MPIDense, 8863b2fbd54SBarry Smith 0,0, 8878c469469SLois Curfman McInnes /* 0,MatLUFactorSymbolic_MPIDense,MatLUFactorNumeric_MPIDense, */ 8888aaee692SLois Curfman McInnes 0,0, 88939ddd567SLois Curfman McInnes MatGetSize_MPIDense,MatGetLocalSize_MPIDense, 89039ddd567SLois Curfman McInnes MatGetOwnershipRange_MPIDense, 891ff14e315SSatish Balay 0,0, MatGetArray_MPIDense, MatRestoreArray_MPIDense, 89294a9d846SBarry Smith MatConvertSameType_MPIDense, 893b49de8d1SLois Curfman McInnes 0,0,0,0,0, 8944e220ebcSLois Curfman McInnes 0,0,MatGetValues_MPIDense,0,0,MatScale_MPIDense, 8954e220ebcSLois Curfman McInnes 0,0,0,MatGetBlockSize_MPIDense}; 8968965ea79SLois Curfman McInnes 8975615d1e5SSatish Balay #undef __FUNC__ 8985615d1e5SSatish Balay #define __FUNC__ "MatCreateMPIDense" 8998965ea79SLois Curfman McInnes /*@C 90039ddd567SLois Curfman McInnes MatCreateMPIDense - Creates a sparse parallel matrix in dense format. 9018965ea79SLois Curfman McInnes 9028965ea79SLois Curfman McInnes Input Parameters: 9038965ea79SLois Curfman McInnes . comm - MPI communicator 9048965ea79SLois Curfman McInnes . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 9058965ea79SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated 9068965ea79SLois Curfman McInnes if N is given) 9078965ea79SLois Curfman McInnes . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 9088965ea79SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated 9098965ea79SLois Curfman McInnes if n is given) 910b4fd4287SBarry Smith . data - optional location of matrix data. Set data=PETSC_NULL for PETSc 911dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 9128965ea79SLois Curfman McInnes 9138965ea79SLois Curfman McInnes Output Parameter: 914477f1c0bSLois Curfman McInnes . A - the matrix 9158965ea79SLois Curfman McInnes 9168965ea79SLois Curfman McInnes Notes: 91739ddd567SLois Curfman McInnes The dense format is fully compatible with standard Fortran 77 91839ddd567SLois Curfman McInnes storage by columns. 9198965ea79SLois Curfman McInnes 92018f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 92118f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 922b4fd4287SBarry Smith set data=PETSC_NULL. 92318f449edSLois Curfman McInnes 9248965ea79SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 9258965ea79SLois Curfman McInnes (possibly both). 9268965ea79SLois Curfman McInnes 9273501a2bdSLois Curfman McInnes Currently, the only parallel dense matrix decomposition is by rows, 9283501a2bdSLois Curfman McInnes so that n=N and each submatrix owns all of the global columns. 9293501a2bdSLois Curfman McInnes 93039ddd567SLois Curfman McInnes .keywords: matrix, dense, parallel 9318965ea79SLois Curfman McInnes 93239ddd567SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 9338965ea79SLois Curfman McInnes @*/ 934477f1c0bSLois Curfman McInnes int MatCreateMPIDense(MPI_Comm comm,int m,int n,int M,int N,Scalar *data,Mat *A) 9358965ea79SLois Curfman McInnes { 9368965ea79SLois Curfman McInnes Mat mat; 93739ddd567SLois Curfman McInnes Mat_MPIDense *a; 93825cdf11fSBarry Smith int ierr, i,flg; 9398965ea79SLois Curfman McInnes 940*3a40ed3dSBarry Smith PetscFunctionBegin; 941ed2daf61SLois Curfman McInnes /* Note: For now, when data is specified above, this assumes the user correctly 942ed2daf61SLois Curfman McInnes allocates the local dense storage space. We should add error checking. */ 94318f449edSLois Curfman McInnes 944477f1c0bSLois Curfman McInnes *A = 0; 945d4bb536fSBarry Smith PetscHeaderCreate(mat,_p_Mat,MAT_COOKIE,MATMPIDENSE,comm,MatDestroy,MatView); 9468965ea79SLois Curfman McInnes PLogObjectCreate(mat); 9470452661fSBarry Smith mat->data = (void *) (a = PetscNew(Mat_MPIDense)); CHKPTRQ(a); 9488965ea79SLois Curfman McInnes PetscMemcpy(&mat->ops,&MatOps,sizeof(struct _MatOps)); 94939ddd567SLois Curfman McInnes mat->destroy = MatDestroy_MPIDense; 95039ddd567SLois Curfman McInnes mat->view = MatView_MPIDense; 9518965ea79SLois Curfman McInnes mat->factor = 0; 95290f02eecSBarry Smith mat->mapping = 0; 9538965ea79SLois Curfman McInnes 954622d7880SLois Curfman McInnes a->factor = 0; 955e0fa3b82SLois Curfman McInnes mat->insertmode = NOT_SET_VALUES; 9568965ea79SLois Curfman McInnes MPI_Comm_rank(comm,&a->rank); 9578965ea79SLois Curfman McInnes MPI_Comm_size(comm,&a->size); 9588965ea79SLois Curfman McInnes 95939ddd567SLois Curfman McInnes if (M == PETSC_DECIDE) MPI_Allreduce(&m,&M,1,MPI_INT,MPI_SUM,comm); 9608965ea79SLois Curfman McInnes if (m == PETSC_DECIDE) {m = M/a->size + ((M % a->size) > a->rank);} 96139ddd567SLois Curfman McInnes 96239ddd567SLois Curfman McInnes /* each row stores all columns */ 96339ddd567SLois Curfman McInnes if (N == PETSC_DECIDE) N = n; 964d7e8b826SBarry Smith if (n == PETSC_DECIDE) {n = N/a->size + ((N % a->size) > a->rank);} 965e3372554SBarry Smith /* if (n != N) SETERRQ(1,0,"For now, only n=N is supported"); */ 966aca0ad90SLois Curfman McInnes a->N = mat->N = N; 967aca0ad90SLois Curfman McInnes a->M = mat->M = M; 968aca0ad90SLois Curfman McInnes a->m = mat->m = m; 969aca0ad90SLois Curfman McInnes a->n = mat->n = n; 9708965ea79SLois Curfman McInnes 9718965ea79SLois Curfman McInnes /* build local table of row and column ownerships */ 972d7e8b826SBarry Smith a->rowners = (int *) PetscMalloc(2*(a->size+2)*sizeof(int)); CHKPTRQ(a->rowners); 973d7e8b826SBarry Smith a->cowners = a->rowners + a->size + 1; 974f09e8eb9SSatish Balay PLogObjectMemory(mat,2*(a->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPIDense)); 9758965ea79SLois Curfman McInnes MPI_Allgather(&m,1,MPI_INT,a->rowners+1,1,MPI_INT,comm); 9768965ea79SLois Curfman McInnes a->rowners[0] = 0; 9778965ea79SLois Curfman McInnes for ( i=2; i<=a->size; i++ ) { 9788965ea79SLois Curfman McInnes a->rowners[i] += a->rowners[i-1]; 9798965ea79SLois Curfman McInnes } 9808965ea79SLois Curfman McInnes a->rstart = a->rowners[a->rank]; 9818965ea79SLois Curfman McInnes a->rend = a->rowners[a->rank+1]; 982d7e8b826SBarry Smith MPI_Allgather(&n,1,MPI_INT,a->cowners+1,1,MPI_INT,comm); 983d7e8b826SBarry Smith a->cowners[0] = 0; 984d7e8b826SBarry Smith for ( i=2; i<=a->size; i++ ) { 985d7e8b826SBarry Smith a->cowners[i] += a->cowners[i-1]; 986d7e8b826SBarry Smith } 9878965ea79SLois Curfman McInnes 988029af93fSBarry Smith ierr = MatCreateSeqDense(PETSC_COMM_SELF,m,N,data,&a->A); CHKERRQ(ierr); 9898965ea79SLois Curfman McInnes PLogObjectParent(mat,a->A); 9908965ea79SLois Curfman McInnes 9918965ea79SLois Curfman McInnes /* build cache for off array entries formed */ 9928965ea79SLois Curfman McInnes ierr = StashBuild_Private(&a->stash); CHKERRQ(ierr); 9938965ea79SLois Curfman McInnes 9948965ea79SLois Curfman McInnes /* stuff used for matrix vector multiply */ 9958965ea79SLois Curfman McInnes a->lvec = 0; 9968965ea79SLois Curfman McInnes a->Mvctx = 0; 99739b7565bSBarry Smith a->roworiented = 1; 9988965ea79SLois Curfman McInnes 999477f1c0bSLois Curfman McInnes *A = mat; 100025cdf11fSBarry Smith ierr = OptionsHasName(PETSC_NULL,"-help",&flg); CHKERRQ(ierr); 100125cdf11fSBarry Smith if (flg) { 10028c469469SLois Curfman McInnes ierr = MatPrintHelp(mat); CHKERRQ(ierr); 10038c469469SLois Curfman McInnes } 1004*3a40ed3dSBarry Smith PetscFunctionReturn(0); 10058965ea79SLois Curfman McInnes } 10068965ea79SLois Curfman McInnes 10075615d1e5SSatish Balay #undef __FUNC__ 10085615d1e5SSatish Balay #define __FUNC__ "MatConvertSameType_MPIDense" 10093d1612f7SBarry Smith static int MatConvertSameType_MPIDense(Mat A,Mat *newmat,int cpvalues) 10108965ea79SLois Curfman McInnes { 10118965ea79SLois Curfman McInnes Mat mat; 10123501a2bdSLois Curfman McInnes Mat_MPIDense *a,*oldmat = (Mat_MPIDense *) A->data; 101339ddd567SLois Curfman McInnes int ierr; 10142ba99913SLois Curfman McInnes FactorCtx *factor; 10158965ea79SLois Curfman McInnes 1016*3a40ed3dSBarry Smith PetscFunctionBegin; 10178965ea79SLois Curfman McInnes *newmat = 0; 1018d4bb536fSBarry Smith PetscHeaderCreate(mat,_p_Mat,MAT_COOKIE,MATMPIDENSE,A->comm,MatDestroy,MatView); 10198965ea79SLois Curfman McInnes PLogObjectCreate(mat); 10200452661fSBarry Smith mat->data = (void *) (a = PetscNew(Mat_MPIDense)); CHKPTRQ(a); 10218965ea79SLois Curfman McInnes PetscMemcpy(&mat->ops,&MatOps,sizeof(struct _MatOps)); 102239ddd567SLois Curfman McInnes mat->destroy = MatDestroy_MPIDense; 102339ddd567SLois Curfman McInnes mat->view = MatView_MPIDense; 10243501a2bdSLois Curfman McInnes mat->factor = A->factor; 1025c456f294SBarry Smith mat->assembled = PETSC_TRUE; 10268965ea79SLois Curfman McInnes 102744cd7ae7SLois Curfman McInnes a->m = mat->m = oldmat->m; 102844cd7ae7SLois Curfman McInnes a->n = mat->n = oldmat->n; 102944cd7ae7SLois Curfman McInnes a->M = mat->M = oldmat->M; 103044cd7ae7SLois Curfman McInnes a->N = mat->N = oldmat->N; 10312ba99913SLois Curfman McInnes if (oldmat->factor) { 10322ba99913SLois Curfman McInnes a->factor = (FactorCtx *) (factor = PetscNew(FactorCtx)); CHKPTRQ(factor); 10332ba99913SLois Curfman McInnes /* copy factor contents ... add this code! */ 10342ba99913SLois Curfman McInnes } else a->factor = 0; 10358965ea79SLois Curfman McInnes 10368965ea79SLois Curfman McInnes a->rstart = oldmat->rstart; 10378965ea79SLois Curfman McInnes a->rend = oldmat->rend; 10388965ea79SLois Curfman McInnes a->size = oldmat->size; 10398965ea79SLois Curfman McInnes a->rank = oldmat->rank; 1040e0fa3b82SLois Curfman McInnes mat->insertmode = NOT_SET_VALUES; 10418965ea79SLois Curfman McInnes 10420452661fSBarry Smith a->rowners = (int *) PetscMalloc((a->size+1)*sizeof(int)); CHKPTRQ(a->rowners); 1043f09e8eb9SSatish Balay PLogObjectMemory(mat,(a->size+1)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPIDense)); 10448965ea79SLois Curfman McInnes PetscMemcpy(a->rowners,oldmat->rowners,(a->size+1)*sizeof(int)); 10458965ea79SLois Curfman McInnes ierr = StashInitialize_Private(&a->stash); CHKERRQ(ierr); 10468965ea79SLois Curfman McInnes 10478965ea79SLois Curfman McInnes ierr = VecDuplicate(oldmat->lvec,&a->lvec); CHKERRQ(ierr); 10488965ea79SLois Curfman McInnes PLogObjectParent(mat,a->lvec); 104955659b69SBarry Smith ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx); CHKERRQ(ierr); 10508965ea79SLois Curfman McInnes PLogObjectParent(mat,a->Mvctx); 10518965ea79SLois Curfman McInnes ierr = MatConvert(oldmat->A,MATSAME,&a->A); CHKERRQ(ierr); 10528965ea79SLois Curfman McInnes PLogObjectParent(mat,a->A); 10538965ea79SLois Curfman McInnes *newmat = mat; 1054*3a40ed3dSBarry Smith PetscFunctionReturn(0); 10558965ea79SLois Curfman McInnes } 10568965ea79SLois Curfman McInnes 105777c4ece6SBarry Smith #include "sys.h" 10588965ea79SLois Curfman McInnes 10595615d1e5SSatish Balay #undef __FUNC__ 10605615d1e5SSatish Balay #define __FUNC__ "MatLoad_MPIDense_DenseInFile" 106190ace30eSBarry Smith int MatLoad_MPIDense_DenseInFile(MPI_Comm comm,int fd,int M, int N, Mat *newmat) 106290ace30eSBarry Smith { 106390ace30eSBarry Smith int *rowners, i,size,rank,m,rstart,rend,ierr,nz,j; 106490ace30eSBarry Smith Scalar *array,*vals,*vals_ptr; 106590ace30eSBarry Smith MPI_Status status; 106690ace30eSBarry Smith 1067*3a40ed3dSBarry Smith PetscFunctionBegin; 106890ace30eSBarry Smith MPI_Comm_rank(comm,&rank); 106990ace30eSBarry Smith MPI_Comm_size(comm,&size); 107090ace30eSBarry Smith 107190ace30eSBarry Smith /* determine ownership of all rows */ 107290ace30eSBarry Smith m = M/size + ((M % size) > rank); 107390ace30eSBarry Smith rowners = (int *) PetscMalloc((size+2)*sizeof(int)); CHKPTRQ(rowners); 107490ace30eSBarry Smith MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm); 107590ace30eSBarry Smith rowners[0] = 0; 107690ace30eSBarry Smith for ( i=2; i<=size; i++ ) { 107790ace30eSBarry Smith rowners[i] += rowners[i-1]; 107890ace30eSBarry Smith } 107990ace30eSBarry Smith rstart = rowners[rank]; 108090ace30eSBarry Smith rend = rowners[rank+1]; 108190ace30eSBarry Smith 108290ace30eSBarry Smith ierr = MatCreateMPIDense(comm,m,PETSC_DECIDE,M,N,PETSC_NULL,newmat);CHKERRQ(ierr); 108390ace30eSBarry Smith ierr = MatGetArray(*newmat,&array); CHKERRQ(ierr); 108490ace30eSBarry Smith 108590ace30eSBarry Smith if (!rank) { 108690ace30eSBarry Smith vals = (Scalar *) PetscMalloc( m*N*sizeof(Scalar) ); CHKPTRQ(vals); 108790ace30eSBarry Smith 108890ace30eSBarry Smith /* read in my part of the matrix numerical values */ 10890752156aSBarry Smith ierr = PetscBinaryRead(fd,vals,m*N,PETSC_SCALAR); CHKERRQ(ierr); 109090ace30eSBarry Smith 109190ace30eSBarry Smith /* insert into matrix-by row (this is why cannot directly read into array */ 109290ace30eSBarry Smith vals_ptr = vals; 109390ace30eSBarry Smith for ( i=0; i<m; i++ ) { 109490ace30eSBarry Smith for ( j=0; j<N; j++ ) { 109590ace30eSBarry Smith array[i + j*m] = *vals_ptr++; 109690ace30eSBarry Smith } 109790ace30eSBarry Smith } 109890ace30eSBarry Smith 109990ace30eSBarry Smith /* read in other processors and ship out */ 110090ace30eSBarry Smith for ( i=1; i<size; i++ ) { 110190ace30eSBarry Smith nz = (rowners[i+1] - rowners[i])*N; 11020752156aSBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR); CHKERRQ(ierr); 110390ace30eSBarry Smith MPI_Send(vals,nz,MPIU_SCALAR,i,(*newmat)->tag,comm); 110490ace30eSBarry Smith } 1105*3a40ed3dSBarry Smith } else { 110690ace30eSBarry Smith /* receive numeric values */ 110790ace30eSBarry Smith vals = (Scalar*) PetscMalloc( m*N*sizeof(Scalar) ); CHKPTRQ(vals); 110890ace30eSBarry Smith 110990ace30eSBarry Smith /* receive message of values*/ 111090ace30eSBarry Smith MPI_Recv(vals,m*N,MPIU_SCALAR,0,(*newmat)->tag,comm,&status); 111190ace30eSBarry Smith 111290ace30eSBarry Smith /* insert into matrix-by row (this is why cannot directly read into array */ 111390ace30eSBarry Smith vals_ptr = vals; 111490ace30eSBarry Smith for ( i=0; i<m; i++ ) { 111590ace30eSBarry Smith for ( j=0; j<N; j++ ) { 111690ace30eSBarry Smith array[i + j*m] = *vals_ptr++; 111790ace30eSBarry Smith } 111890ace30eSBarry Smith } 111990ace30eSBarry Smith } 112090ace30eSBarry Smith PetscFree(rowners); 112190ace30eSBarry Smith PetscFree(vals); 11226d4a8577SBarry Smith ierr = MatAssemblyBegin(*newmat,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 11236d4a8577SBarry Smith ierr = MatAssemblyEnd(*newmat,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 1124*3a40ed3dSBarry Smith PetscFunctionReturn(0); 112590ace30eSBarry Smith } 112690ace30eSBarry Smith 112790ace30eSBarry Smith 11285615d1e5SSatish Balay #undef __FUNC__ 11295615d1e5SSatish Balay #define __FUNC__ "MatLoad_MPIDense" 113019bcc07fSBarry Smith int MatLoad_MPIDense(Viewer viewer,MatType type,Mat *newmat) 11318965ea79SLois Curfman McInnes { 11328965ea79SLois Curfman McInnes Mat A; 11338965ea79SLois Curfman McInnes Scalar *vals,*svals; 113419bcc07fSBarry Smith MPI_Comm comm = ((PetscObject)viewer)->comm; 11358965ea79SLois Curfman McInnes MPI_Status status; 11368965ea79SLois Curfman McInnes int header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,maxnz,*cols; 11378965ea79SLois Curfman McInnes int *ourlens,*sndcounts = 0,*procsnz = 0, *offlens,jj,*mycols,*smycols; 113819bcc07fSBarry Smith int tag = ((PetscObject)viewer)->tag; 1139*3a40ed3dSBarry Smith int i, nz, ierr, j,rstart, rend, fd; 11408965ea79SLois Curfman McInnes 1141*3a40ed3dSBarry Smith PetscFunctionBegin; 11428965ea79SLois Curfman McInnes MPI_Comm_size(comm,&size); MPI_Comm_rank(comm,&rank); 11438965ea79SLois Curfman McInnes if (!rank) { 114490ace30eSBarry Smith ierr = ViewerBinaryGetDescriptor(viewer,&fd); CHKERRQ(ierr); 11450752156aSBarry Smith ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT); CHKERRQ(ierr); 1146e3372554SBarry Smith if (header[0] != MAT_COOKIE) SETERRQ(1,0,"not matrix object"); 11478965ea79SLois Curfman McInnes } 11488965ea79SLois Curfman McInnes 11498965ea79SLois Curfman McInnes MPI_Bcast(header+1,3,MPI_INT,0,comm); 115090ace30eSBarry Smith M = header[1]; N = header[2]; nz = header[3]; 115190ace30eSBarry Smith 115290ace30eSBarry Smith /* 115390ace30eSBarry Smith Handle case where matrix is stored on disk as a dense matrix 115490ace30eSBarry Smith */ 115590ace30eSBarry Smith if (nz == MATRIX_BINARY_FORMAT_DENSE) { 1156*3a40ed3dSBarry Smith ierr = MatLoad_MPIDense_DenseInFile(comm,fd,M,N,newmat);CHKERRQ(ierr); 1157*3a40ed3dSBarry Smith PetscFunctionReturn(0); 115890ace30eSBarry Smith } 115990ace30eSBarry Smith 11608965ea79SLois Curfman McInnes /* determine ownership of all rows */ 11618965ea79SLois Curfman McInnes m = M/size + ((M % size) > rank); 11620452661fSBarry Smith rowners = (int *) PetscMalloc((size+2)*sizeof(int)); CHKPTRQ(rowners); 11638965ea79SLois Curfman McInnes MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm); 11648965ea79SLois Curfman McInnes rowners[0] = 0; 11658965ea79SLois Curfman McInnes for ( i=2; i<=size; i++ ) { 11668965ea79SLois Curfman McInnes rowners[i] += rowners[i-1]; 11678965ea79SLois Curfman McInnes } 11688965ea79SLois Curfman McInnes rstart = rowners[rank]; 11698965ea79SLois Curfman McInnes rend = rowners[rank+1]; 11708965ea79SLois Curfman McInnes 11718965ea79SLois Curfman McInnes /* distribute row lengths to all processors */ 11720452661fSBarry Smith ourlens = (int*) PetscMalloc( 2*(rend-rstart)*sizeof(int) ); CHKPTRQ(ourlens); 11738965ea79SLois Curfman McInnes offlens = ourlens + (rend-rstart); 11748965ea79SLois Curfman McInnes if (!rank) { 11750452661fSBarry Smith rowlengths = (int*) PetscMalloc( M*sizeof(int) ); CHKPTRQ(rowlengths); 11760752156aSBarry Smith ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT); CHKERRQ(ierr); 11770452661fSBarry Smith sndcounts = (int*) PetscMalloc( size*sizeof(int) ); CHKPTRQ(sndcounts); 11788965ea79SLois Curfman McInnes for ( i=0; i<size; i++ ) sndcounts[i] = rowners[i+1] - rowners[i]; 11798965ea79SLois Curfman McInnes MPI_Scatterv(rowlengths,sndcounts,rowners,MPI_INT,ourlens,rend-rstart,MPI_INT,0,comm); 11800452661fSBarry Smith PetscFree(sndcounts); 11818965ea79SLois Curfman McInnes } 11828965ea79SLois Curfman McInnes else { 11838965ea79SLois Curfman McInnes MPI_Scatterv(0,0,0,MPI_INT,ourlens,rend-rstart,MPI_INT, 0,comm); 11848965ea79SLois Curfman McInnes } 11858965ea79SLois Curfman McInnes 11868965ea79SLois Curfman McInnes if (!rank) { 11878965ea79SLois Curfman McInnes /* calculate the number of nonzeros on each processor */ 11880452661fSBarry Smith procsnz = (int*) PetscMalloc( size*sizeof(int) ); CHKPTRQ(procsnz); 1189cddf8d76SBarry Smith PetscMemzero(procsnz,size*sizeof(int)); 11908965ea79SLois Curfman McInnes for ( i=0; i<size; i++ ) { 11918965ea79SLois Curfman McInnes for ( j=rowners[i]; j< rowners[i+1]; j++ ) { 11928965ea79SLois Curfman McInnes procsnz[i] += rowlengths[j]; 11938965ea79SLois Curfman McInnes } 11948965ea79SLois Curfman McInnes } 11950452661fSBarry Smith PetscFree(rowlengths); 11968965ea79SLois Curfman McInnes 11978965ea79SLois Curfman McInnes /* determine max buffer needed and allocate it */ 11988965ea79SLois Curfman McInnes maxnz = 0; 11998965ea79SLois Curfman McInnes for ( i=0; i<size; i++ ) { 12000452661fSBarry Smith maxnz = PetscMax(maxnz,procsnz[i]); 12018965ea79SLois Curfman McInnes } 12020452661fSBarry Smith cols = (int *) PetscMalloc( maxnz*sizeof(int) ); CHKPTRQ(cols); 12038965ea79SLois Curfman McInnes 12048965ea79SLois Curfman McInnes /* read in my part of the matrix column indices */ 12058965ea79SLois Curfman McInnes nz = procsnz[0]; 12060452661fSBarry Smith mycols = (int *) PetscMalloc( nz*sizeof(int) ); CHKPTRQ(mycols); 12070752156aSBarry Smith ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT); CHKERRQ(ierr); 12088965ea79SLois Curfman McInnes 12098965ea79SLois Curfman McInnes /* read in every one elses and ship off */ 12108965ea79SLois Curfman McInnes for ( i=1; i<size; i++ ) { 12118965ea79SLois Curfman McInnes nz = procsnz[i]; 12120752156aSBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT); CHKERRQ(ierr); 12138965ea79SLois Curfman McInnes MPI_Send(cols,nz,MPI_INT,i,tag,comm); 12148965ea79SLois Curfman McInnes } 12150452661fSBarry Smith PetscFree(cols); 1216*3a40ed3dSBarry Smith } else { 12178965ea79SLois Curfman McInnes /* determine buffer space needed for message */ 12188965ea79SLois Curfman McInnes nz = 0; 12198965ea79SLois Curfman McInnes for ( i=0; i<m; i++ ) { 12208965ea79SLois Curfman McInnes nz += ourlens[i]; 12218965ea79SLois Curfman McInnes } 12220452661fSBarry Smith mycols = (int*) PetscMalloc( nz*sizeof(int) ); CHKPTRQ(mycols); 12238965ea79SLois Curfman McInnes 12248965ea79SLois Curfman McInnes /* receive message of column indices*/ 12258965ea79SLois Curfman McInnes MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status); 12268965ea79SLois Curfman McInnes MPI_Get_count(&status,MPI_INT,&maxnz); 1227e3372554SBarry Smith if (maxnz != nz) SETERRQ(1,0,"something is wrong with file"); 12288965ea79SLois Curfman McInnes } 12298965ea79SLois Curfman McInnes 12308965ea79SLois Curfman McInnes /* loop over local rows, determining number of off diagonal entries */ 1231cddf8d76SBarry Smith PetscMemzero(offlens,m*sizeof(int)); 12328965ea79SLois Curfman McInnes jj = 0; 12338965ea79SLois Curfman McInnes for ( i=0; i<m; i++ ) { 12348965ea79SLois Curfman McInnes for ( j=0; j<ourlens[i]; j++ ) { 12358965ea79SLois Curfman McInnes if (mycols[jj] < rstart || mycols[jj] >= rend) offlens[i]++; 12368965ea79SLois Curfman McInnes jj++; 12378965ea79SLois Curfman McInnes } 12388965ea79SLois Curfman McInnes } 12398965ea79SLois Curfman McInnes 12408965ea79SLois Curfman McInnes /* create our matrix */ 12418965ea79SLois Curfman McInnes for ( i=0; i<m; i++ ) { 12428965ea79SLois Curfman McInnes ourlens[i] -= offlens[i]; 12438965ea79SLois Curfman McInnes } 1244b4fd4287SBarry Smith ierr = MatCreateMPIDense(comm,m,PETSC_DECIDE,M,N,PETSC_NULL,newmat);CHKERRQ(ierr); 12458965ea79SLois Curfman McInnes A = *newmat; 12468965ea79SLois Curfman McInnes for ( i=0; i<m; i++ ) { 12478965ea79SLois Curfman McInnes ourlens[i] += offlens[i]; 12488965ea79SLois Curfman McInnes } 12498965ea79SLois Curfman McInnes 12508965ea79SLois Curfman McInnes if (!rank) { 12510452661fSBarry Smith vals = (Scalar *) PetscMalloc( maxnz*sizeof(Scalar) ); CHKPTRQ(vals); 12528965ea79SLois Curfman McInnes 12538965ea79SLois Curfman McInnes /* read in my part of the matrix numerical values */ 12548965ea79SLois Curfman McInnes nz = procsnz[0]; 12550752156aSBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR); CHKERRQ(ierr); 12568965ea79SLois Curfman McInnes 12578965ea79SLois Curfman McInnes /* insert into matrix */ 12588965ea79SLois Curfman McInnes jj = rstart; 12598965ea79SLois Curfman McInnes smycols = mycols; 12608965ea79SLois Curfman McInnes svals = vals; 12618965ea79SLois Curfman McInnes for ( i=0; i<m; i++ ) { 12628965ea79SLois Curfman McInnes ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 12638965ea79SLois Curfman McInnes smycols += ourlens[i]; 12648965ea79SLois Curfman McInnes svals += ourlens[i]; 12658965ea79SLois Curfman McInnes jj++; 12668965ea79SLois Curfman McInnes } 12678965ea79SLois Curfman McInnes 12688965ea79SLois Curfman McInnes /* read in other processors and ship out */ 12698965ea79SLois Curfman McInnes for ( i=1; i<size; i++ ) { 12708965ea79SLois Curfman McInnes nz = procsnz[i]; 12710752156aSBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR); CHKERRQ(ierr); 12728965ea79SLois Curfman McInnes MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm); 12738965ea79SLois Curfman McInnes } 12740452661fSBarry Smith PetscFree(procsnz); 1275*3a40ed3dSBarry Smith } else { 12768965ea79SLois Curfman McInnes /* receive numeric values */ 12770452661fSBarry Smith vals = (Scalar*) PetscMalloc( nz*sizeof(Scalar) ); CHKPTRQ(vals); 12788965ea79SLois Curfman McInnes 12798965ea79SLois Curfman McInnes /* receive message of values*/ 12808965ea79SLois Curfman McInnes MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status); 12818965ea79SLois Curfman McInnes MPI_Get_count(&status,MPIU_SCALAR,&maxnz); 1282e3372554SBarry Smith if (maxnz != nz) SETERRQ(1,0,"something is wrong with file"); 12838965ea79SLois Curfman McInnes 12848965ea79SLois Curfman McInnes /* insert into matrix */ 12858965ea79SLois Curfman McInnes jj = rstart; 12868965ea79SLois Curfman McInnes smycols = mycols; 12878965ea79SLois Curfman McInnes svals = vals; 12888965ea79SLois Curfman McInnes for ( i=0; i<m; i++ ) { 12898965ea79SLois Curfman McInnes ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 12908965ea79SLois Curfman McInnes smycols += ourlens[i]; 12918965ea79SLois Curfman McInnes svals += ourlens[i]; 12928965ea79SLois Curfman McInnes jj++; 12938965ea79SLois Curfman McInnes } 12948965ea79SLois Curfman McInnes } 12950452661fSBarry Smith PetscFree(ourlens); PetscFree(vals); PetscFree(mycols); PetscFree(rowners); 12968965ea79SLois Curfman McInnes 12976d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 12986d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 1299*3a40ed3dSBarry Smith PetscFunctionReturn(0); 13008965ea79SLois Curfman McInnes } 130190ace30eSBarry Smith 130290ace30eSBarry Smith 130390ace30eSBarry Smith 130490ace30eSBarry Smith 130590ace30eSBarry Smith 1306