1ed3cc1f0SBarry Smith /* 2ed3cc1f0SBarry Smith Basic functions for basic parallel dense matrices. 347d993e7Ssuyashtn Portions of this code are under: 447d993e7Ssuyashtn Copyright (c) 2022 Advanced Micro Devices, Inc. All rights reserved. 5ed3cc1f0SBarry Smith */ 6ed3cc1f0SBarry Smith 7c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h> /*I "petscmat.h" I*/ 88949adfdSHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 9baa3c1c6SHong Zhang #include <petscblaslapack.h> 10*4186a4bbSPierre Jolivet #include <petsc/private/vecimpl.h> 118965ea79SLois Curfman McInnes 12ab92ecdeSBarry Smith /*@ 1311a5261eSBarry Smith MatDenseGetLocalMatrix - For a `MATMPIDENSE` or `MATSEQDENSE` matrix returns the sequential 14ab92ecdeSBarry Smith matrix that represents the operator. For sequential matrices it returns itself. 15ab92ecdeSBarry Smith 16ab92ecdeSBarry Smith Input Parameter: 172ef1f0ffSBarry Smith . A - the sequential or MPI `MATDENSE` matrix 18ab92ecdeSBarry Smith 19ab92ecdeSBarry Smith Output Parameter: 20ab92ecdeSBarry Smith . B - the inner matrix 21ab92ecdeSBarry Smith 228e6c10adSSatish Balay Level: intermediate 238e6c10adSSatish Balay 241cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MATMPIDENSE`, `MATSEQDENSE` 25ab92ecdeSBarry Smith @*/ 26d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetLocalMatrix(Mat A, Mat *B) 27d71ae5a4SJacob Faibussowitsch { 28ab92ecdeSBarry Smith Mat_MPIDense *mat = (Mat_MPIDense *)A->data; 29ace3abfcSBarry Smith PetscBool flg; 30ab92ecdeSBarry Smith 31ab92ecdeSBarry Smith PetscFunctionBegin; 32d5ea218eSStefano Zampini PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 334f572ea9SToby Isaac PetscAssertPointer(B, 2); 349566063dSJacob Faibussowitsch PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIDENSE, &flg)); 352205254eSKarl Rupp if (flg) *B = mat->A; 36f140bc17SStefano Zampini else { 379566063dSJacob Faibussowitsch PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATSEQDENSE, &flg)); 3828b400f6SJacob Faibussowitsch PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not for matrix type %s", ((PetscObject)A)->type_name); 39f140bc17SStefano Zampini *B = A; 40f140bc17SStefano Zampini } 413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42ab92ecdeSBarry Smith } 43ab92ecdeSBarry Smith 4466976f2fSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIDense(Mat A, Mat B, MatStructure s) 45d71ae5a4SJacob Faibussowitsch { 46a76f77c3SStefano Zampini Mat_MPIDense *Amat = (Mat_MPIDense *)A->data; 47a76f77c3SStefano Zampini Mat_MPIDense *Bmat = (Mat_MPIDense *)B->data; 48a76f77c3SStefano Zampini 49a76f77c3SStefano Zampini PetscFunctionBegin; 509566063dSJacob Faibussowitsch PetscCall(MatCopy(Amat->A, Bmat->A, s)); 513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 52a76f77c3SStefano Zampini } 53a76f77c3SStefano Zampini 54d71ae5a4SJacob Faibussowitsch PetscErrorCode MatShift_MPIDense(Mat A, PetscScalar alpha) 55d71ae5a4SJacob Faibussowitsch { 562f605a99SJose E. Roman Mat_MPIDense *mat = (Mat_MPIDense *)A->data; 572f605a99SJose E. Roman PetscInt j, lda, rstart = A->rmap->rstart, rend = A->rmap->rend, rend2; 582f605a99SJose E. Roman PetscScalar *v; 592f605a99SJose E. Roman 602f605a99SJose E. Roman PetscFunctionBegin; 612f605a99SJose E. Roman PetscCall(MatDenseGetArray(mat->A, &v)); 622f605a99SJose E. Roman PetscCall(MatDenseGetLDA(mat->A, &lda)); 632f605a99SJose E. Roman rend2 = PetscMin(rend, A->cmap->N); 642f605a99SJose E. Roman if (rend2 > rstart) { 652f605a99SJose E. Roman for (j = rstart; j < rend2; j++) v[j - rstart + j * lda] += alpha; 662f605a99SJose E. Roman PetscCall(PetscLogFlops(rend2 - rstart)); 672f605a99SJose E. Roman } 682f605a99SJose E. Roman PetscCall(MatDenseRestoreArray(mat->A, &v)); 693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 702f605a99SJose E. Roman } 712f605a99SJose E. Roman 7266976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRow_MPIDense(Mat A, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 73d71ae5a4SJacob Faibussowitsch { 74ba8c8a56SBarry Smith Mat_MPIDense *mat = (Mat_MPIDense *)A->data; 75d0f46423SBarry Smith PetscInt lrow, rstart = A->rmap->rstart, rend = A->rmap->rend; 76ba8c8a56SBarry Smith 77ba8c8a56SBarry Smith PetscFunctionBegin; 78aed4548fSBarry Smith PetscCheck(row >= rstart && row < rend, PETSC_COMM_SELF, PETSC_ERR_SUP, "only local rows"); 79ba8c8a56SBarry Smith lrow = row - rstart; 809566063dSJacob Faibussowitsch PetscCall(MatGetRow(mat->A, lrow, nz, (const PetscInt **)idx, (const PetscScalar **)v)); 813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 82ba8c8a56SBarry Smith } 83ba8c8a56SBarry Smith 8466976f2fSJacob Faibussowitsch static PetscErrorCode MatRestoreRow_MPIDense(Mat A, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 85d71ae5a4SJacob Faibussowitsch { 86637a0070SStefano Zampini Mat_MPIDense *mat = (Mat_MPIDense *)A->data; 87637a0070SStefano Zampini PetscInt lrow, rstart = A->rmap->rstart, rend = A->rmap->rend; 88ba8c8a56SBarry Smith 89ba8c8a56SBarry Smith PetscFunctionBegin; 90aed4548fSBarry Smith PetscCheck(row >= rstart && row < rend, PETSC_COMM_SELF, PETSC_ERR_SUP, "only local rows"); 91637a0070SStefano Zampini lrow = row - rstart; 929566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(mat->A, lrow, nz, (const PetscInt **)idx, (const PetscScalar **)v)); 933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 94ba8c8a56SBarry Smith } 95ba8c8a56SBarry Smith 9666976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonalBlock_MPIDense(Mat A, Mat *a) 97d71ae5a4SJacob Faibussowitsch { 980de54da6SSatish Balay Mat_MPIDense *mdn = (Mat_MPIDense *)A->data; 99d0f46423SBarry Smith PetscInt m = A->rmap->n, rstart = A->rmap->rstart; 10087828ca2SBarry Smith PetscScalar *array; 1010de54da6SSatish Balay MPI_Comm comm; 1024b6ae80fSStefano Zampini PetscBool flg; 10311bd1e4dSLisandro Dalcin Mat B; 1040de54da6SSatish Balay 1050de54da6SSatish Balay PetscFunctionBegin; 1069566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &flg)); 10728b400f6SJacob Faibussowitsch PetscCheck(flg, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only square matrices supported."); 1089566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)A, "DiagonalBlock", (PetscObject *)&B)); 109616b8fbbSStefano Zampini if (!B) { /* This should use MatDenseGetSubMatrix (not create), but we would need a call like MatRestoreDiagonalBlock */ 110a51cd166SPierre Jolivet #if PetscDefined(HAVE_CUDA) 1119566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)mdn->A, MATSEQDENSECUDA, &flg)); 11228b400f6SJacob Faibussowitsch PetscCheck(!flg, PETSC_COMM_SELF, PETSC_ERR_SUP, "Not coded for %s. Send an email to petsc-dev@mcs.anl.gov to request this feature", MATSEQDENSECUDA); 113a51cd166SPierre Jolivet #elif PetscDefined(HAVE_HIP) 11447d993e7Ssuyashtn PetscCall(PetscObjectTypeCompare((PetscObject)mdn->A, MATSEQDENSEHIP, &flg)); 11547d993e7Ssuyashtn PetscCheck(!flg, PETSC_COMM_SELF, PETSC_ERR_SUP, "Not coded for %s. Send an email to petsc-dev@mcs.anl.gov to request this feature", MATSEQDENSEHIP); 11647d993e7Ssuyashtn #endif 117f4f49eeaSPierre Jolivet PetscCall(PetscObjectGetComm((PetscObject)mdn->A, &comm)); 1189566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &B)); 1199566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, m, m, m, m)); 1209566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)mdn->A)->type_name)); 1219566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(mdn->A, (const PetscScalar **)&array)); 1229566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(B, array + m * rstart)); 1239566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(mdn->A, (const PetscScalar **)&array)); 1249566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)A, "DiagonalBlock", (PetscObject)B)); 12511bd1e4dSLisandro Dalcin *a = B; 1269566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 1272205254eSKarl Rupp } else *a = B; 1283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1290de54da6SSatish Balay } 1300de54da6SSatish Balay 13166976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValues_MPIDense(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], const PetscScalar v[], InsertMode addv) 132d71ae5a4SJacob Faibussowitsch { 13339b7565bSBarry Smith Mat_MPIDense *A = (Mat_MPIDense *)mat->data; 134d0f46423SBarry Smith PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend, row; 135ace3abfcSBarry Smith PetscBool roworiented = A->roworiented; 1368965ea79SLois Curfman McInnes 1373a40ed3dSBarry Smith PetscFunctionBegin; 1388965ea79SLois Curfman McInnes for (i = 0; i < m; i++) { 1395ef9f2a5SBarry Smith if (idxm[i] < 0) continue; 14008401ef6SPierre Jolivet PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large"); 1418965ea79SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 1428965ea79SLois Curfman McInnes row = idxm[i] - rstart; 14339b7565bSBarry Smith if (roworiented) { 144a80ceddfSStefano Zampini PetscCall(MatSetValues(A->A, 1, &row, n, idxn, v ? v + i * n : NULL, addv)); 1453a40ed3dSBarry Smith } else { 1468965ea79SLois Curfman McInnes for (j = 0; j < n; j++) { 1475ef9f2a5SBarry Smith if (idxn[j] < 0) continue; 14808401ef6SPierre Jolivet PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large"); 149a80ceddfSStefano Zampini PetscCall(MatSetValues(A->A, 1, &row, 1, &idxn[j], v ? v + i + j * m : NULL, addv)); 15039b7565bSBarry Smith } 1518965ea79SLois Curfman McInnes } 1522205254eSKarl Rupp } else if (!A->donotstash) { 1535080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 15439b7565bSBarry Smith if (roworiented) { 155a80ceddfSStefano Zampini PetscCall(MatStashValuesRow_Private(&mat->stash, idxm[i], n, idxn, v ? v + i * n : NULL, PETSC_FALSE)); 156d36fbae8SSatish Balay } else { 157a80ceddfSStefano Zampini PetscCall(MatStashValuesCol_Private(&mat->stash, idxm[i], n, idxn, v ? v + i : NULL, m, PETSC_FALSE)); 15839b7565bSBarry Smith } 159b49de8d1SLois Curfman McInnes } 160b49de8d1SLois Curfman McInnes } 1613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 162b49de8d1SLois Curfman McInnes } 163b49de8d1SLois Curfman McInnes 16466976f2fSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIDense(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 165d71ae5a4SJacob Faibussowitsch { 166b49de8d1SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 167d0f46423SBarry Smith PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend, row; 168b49de8d1SLois Curfman McInnes 1693a40ed3dSBarry Smith PetscFunctionBegin; 170b49de8d1SLois Curfman McInnes for (i = 0; i < m; i++) { 17154c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 17254c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large"); 173b49de8d1SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 174b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 175b49de8d1SLois Curfman McInnes for (j = 0; j < n; j++) { 17654c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 17754c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large"); 1789566063dSJacob Faibussowitsch PetscCall(MatGetValues(mdn->A, 1, &row, 1, &idxn[j], v + i * n + j)); 179b49de8d1SLois Curfman McInnes } 180e7e72b3dSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported"); 1818965ea79SLois Curfman McInnes } 1823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1838965ea79SLois Curfman McInnes } 1848965ea79SLois Curfman McInnes 185d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseGetLDA_MPIDense(Mat A, PetscInt *lda) 186d71ae5a4SJacob Faibussowitsch { 18749a6ff4bSBarry Smith Mat_MPIDense *a = (Mat_MPIDense *)A->data; 18849a6ff4bSBarry Smith 18949a6ff4bSBarry Smith PetscFunctionBegin; 1909566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, lda)); 1913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 19249a6ff4bSBarry Smith } 19349a6ff4bSBarry Smith 194d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseSetLDA_MPIDense(Mat A, PetscInt lda) 195d71ae5a4SJacob Faibussowitsch { 196ad16ce7aSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 19747d993e7Ssuyashtn MatType mtype = MATSEQDENSE; 198ad16ce7aSStefano Zampini 199ad16ce7aSStefano Zampini PetscFunctionBegin; 20017359960SJose E. Roman if (!a->A) { 20128b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 2029566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->rmap)); 2039566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->cmap)); 2049566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &a->A)); 2059566063dSJacob Faibussowitsch PetscCall(MatSetSizes(a->A, A->rmap->n, A->cmap->N, A->rmap->n, A->cmap->N)); 206a51cd166SPierre Jolivet #if PetscDefined(HAVE_CUDA) 20747d993e7Ssuyashtn PetscBool iscuda; 2089566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIDENSECUDA, &iscuda)); 20947d993e7Ssuyashtn if (iscuda) mtype = MATSEQDENSECUDA; 210a51cd166SPierre Jolivet #elif PetscDefined(HAVE_HIP) 21147d993e7Ssuyashtn PetscBool iship; 21247d993e7Ssuyashtn PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIDENSEHIP, &iship)); 21347d993e7Ssuyashtn if (iship) mtype = MATSEQDENSEHIP; 21447d993e7Ssuyashtn #endif 21547d993e7Ssuyashtn PetscCall(MatSetType(a->A, mtype)); 21617359960SJose E. Roman } 2179566063dSJacob Faibussowitsch PetscCall(MatDenseSetLDA(a->A, lda)); 2183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 219ad16ce7aSStefano Zampini } 220ad16ce7aSStefano Zampini 221d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseGetArray_MPIDense(Mat A, PetscScalar **array) 222d71ae5a4SJacob Faibussowitsch { 223ff14e315SSatish Balay Mat_MPIDense *a = (Mat_MPIDense *)A->data; 224ff14e315SSatish Balay 2253a40ed3dSBarry Smith PetscFunctionBegin; 22628b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 2279566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(a->A, array)); 2283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 229ff14e315SSatish Balay } 230ff14e315SSatish Balay 231f1e99121SPierre Jolivet static PetscErrorCode MatDenseGetArrayRead_MPIDense(Mat A, PetscScalar **array) 232d71ae5a4SJacob Faibussowitsch { 2338572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense *)A->data; 2348572280aSBarry Smith 2358572280aSBarry Smith PetscFunctionBegin; 23628b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 237f1e99121SPierre Jolivet PetscCall(MatDenseGetArrayRead(a->A, (const PetscScalar **)array)); 2383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2398572280aSBarry Smith } 2408572280aSBarry Smith 241d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseGetArrayWrite_MPIDense(Mat A, PetscScalar **array) 242d71ae5a4SJacob Faibussowitsch { 2436947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 2446947451fSStefano Zampini 2456947451fSStefano Zampini PetscFunctionBegin; 24628b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 2479566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(a->A, array)); 2483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2496947451fSStefano Zampini } 2506947451fSStefano Zampini 251d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDensePlaceArray_MPIDense(Mat A, const PetscScalar *array) 252d71ae5a4SJacob Faibussowitsch { 253d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense *)A->data; 254d3042a70SBarry Smith 255d3042a70SBarry Smith PetscFunctionBegin; 25628b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 25728b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 2589566063dSJacob Faibussowitsch PetscCall(MatDensePlaceArray(a->A, array)); 2593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 260d3042a70SBarry Smith } 261d3042a70SBarry Smith 262d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseResetArray_MPIDense(Mat A) 263d71ae5a4SJacob Faibussowitsch { 264d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense *)A->data; 265d3042a70SBarry Smith 266d3042a70SBarry Smith PetscFunctionBegin; 26728b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 26828b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 2699566063dSJacob Faibussowitsch PetscCall(MatDenseResetArray(a->A)); 2703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 271d3042a70SBarry Smith } 272d3042a70SBarry Smith 273d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseReplaceArray_MPIDense(Mat A, const PetscScalar *array) 274d71ae5a4SJacob Faibussowitsch { 275d5ea218eSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 276d5ea218eSStefano Zampini 277d5ea218eSStefano Zampini PetscFunctionBegin; 27828b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 27928b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 2809566063dSJacob Faibussowitsch PetscCall(MatDenseReplaceArray(a->A, array)); 2813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 282d5ea218eSStefano Zampini } 283d5ea218eSStefano Zampini 284d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrix_MPIDense(Mat A, IS isrow, IS iscol, MatReuse scall, Mat *B) 285d71ae5a4SJacob Faibussowitsch { 286ca3fa75bSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense *)A->data, *newmatd; 287637a0070SStefano Zampini PetscInt lda, i, j, rstart, rend, nrows, ncols, Ncols, nlrows, nlcols; 2885d0c19d7SBarry Smith const PetscInt *irow, *icol; 289637a0070SStefano Zampini const PetscScalar *v; 290637a0070SStefano Zampini PetscScalar *bv; 291ca3fa75bSLois Curfman McInnes Mat newmat; 2924aa3045dSJed Brown IS iscol_local; 29342a884f0SBarry Smith MPI_Comm comm_is, comm_mat; 294ca3fa75bSLois Curfman McInnes 295ca3fa75bSLois Curfman McInnes PetscFunctionBegin; 2969566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm_mat)); 2979566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)iscol, &comm_is)); 29808401ef6SPierre Jolivet PetscCheck(comm_mat == comm_is, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "IS communicator must match matrix communicator"); 29942a884f0SBarry Smith 3009566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol, &iscol_local)); 3019566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isrow, &irow)); 3029566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_local, &icol)); 3039566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &nrows)); 3049566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &ncols)); 3059566063dSJacob Faibussowitsch PetscCall(ISGetSize(iscol, &Ncols)); /* global number of columns, size of iscol_local */ 306ca3fa75bSLois Curfman McInnes 307ca3fa75bSLois Curfman McInnes /* No parallel redistribution currently supported! Should really check each index set 308da81f932SPierre Jolivet to confirm that it is OK. ... Currently supports only submatrix same partitioning as 3097eba5e9cSLois Curfman McInnes original matrix! */ 310ca3fa75bSLois Curfman McInnes 3119566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, &nlrows, &nlcols)); 3129566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, &rend)); 313ca3fa75bSLois Curfman McInnes 314ca3fa75bSLois Curfman McInnes /* Check submatrix call */ 315ca3fa75bSLois Curfman McInnes if (scall == MAT_REUSE_MATRIX) { 316e32f2f54SBarry Smith /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */ 3177eba5e9cSLois Curfman McInnes /* Really need to test rows and column sizes! */ 318ca3fa75bSLois Curfman McInnes newmat = *B; 319ca3fa75bSLois Curfman McInnes } else { 320ca3fa75bSLois Curfman McInnes /* Create and fill new matrix */ 3219566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &newmat)); 3229566063dSJacob Faibussowitsch PetscCall(MatSetSizes(newmat, nrows, ncols, PETSC_DECIDE, Ncols)); 3239566063dSJacob Faibussowitsch PetscCall(MatSetType(newmat, ((PetscObject)A)->type_name)); 3249566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(newmat, NULL)); 325ca3fa75bSLois Curfman McInnes } 326ca3fa75bSLois Curfman McInnes 327ca3fa75bSLois Curfman McInnes /* Now extract the data pointers and do the copy, column at a time */ 328ca3fa75bSLois Curfman McInnes newmatd = (Mat_MPIDense *)newmat->data; 3299566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(newmatd->A, &bv)); 3309566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(mat->A, &v)); 3319566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(mat->A, &lda)); 3324aa3045dSJed Brown for (i = 0; i < Ncols; i++) { 333637a0070SStefano Zampini const PetscScalar *av = v + lda * icol[i]; 334ad540459SPierre Jolivet for (j = 0; j < nrows; j++) *bv++ = av[irow[j] - rstart]; 335ca3fa75bSLois Curfman McInnes } 3369566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(mat->A, &v)); 3379566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(newmatd->A, &bv)); 338ca3fa75bSLois Curfman McInnes 339ca3fa75bSLois Curfman McInnes /* Assemble the matrices so that the correct flags are set */ 3409566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(newmat, MAT_FINAL_ASSEMBLY)); 3419566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(newmat, MAT_FINAL_ASSEMBLY)); 342ca3fa75bSLois Curfman McInnes 343ca3fa75bSLois Curfman McInnes /* Free work space */ 3449566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isrow, &irow)); 3459566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_local, &icol)); 3469566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 347ca3fa75bSLois Curfman McInnes *B = newmat; 3483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 349ca3fa75bSLois Curfman McInnes } 350ca3fa75bSLois Curfman McInnes 35166976f2fSJacob Faibussowitsch static PetscErrorCode MatDenseRestoreArray_MPIDense(Mat A, PetscScalar **array) 352d71ae5a4SJacob Faibussowitsch { 35373a71a0fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense *)A->data; 35473a71a0fSBarry Smith 3553a40ed3dSBarry Smith PetscFunctionBegin; 3569566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(a->A, array)); 3573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 358ff14e315SSatish Balay } 359ff14e315SSatish Balay 360f1e99121SPierre Jolivet static PetscErrorCode MatDenseRestoreArrayRead_MPIDense(Mat A, PetscScalar **array) 361d71ae5a4SJacob Faibussowitsch { 3628572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense *)A->data; 3638572280aSBarry Smith 3648572280aSBarry Smith PetscFunctionBegin; 365f1e99121SPierre Jolivet PetscCall(MatDenseRestoreArrayRead(a->A, (const PetscScalar **)array)); 3663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3678572280aSBarry Smith } 3688572280aSBarry Smith 36966976f2fSJacob Faibussowitsch static PetscErrorCode MatDenseRestoreArrayWrite_MPIDense(Mat A, PetscScalar **array) 370d71ae5a4SJacob Faibussowitsch { 3716947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 3726947451fSStefano Zampini 3736947451fSStefano Zampini PetscFunctionBegin; 3749566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(a->A, array)); 3753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3766947451fSStefano Zampini } 3776947451fSStefano Zampini 37866976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat, MatAssemblyType mode) 379d71ae5a4SJacob Faibussowitsch { 38039ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 38113f74950SBarry Smith PetscInt nstash, reallocs; 3828965ea79SLois Curfman McInnes 3833a40ed3dSBarry Smith PetscFunctionBegin; 3843ba16761SJacob Faibussowitsch if (mdn->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS); 3858965ea79SLois Curfman McInnes 3869566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 3879566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 3889566063dSJacob Faibussowitsch PetscCall(PetscInfo(mdn->A, "Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 3893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3908965ea79SLois Curfman McInnes } 3918965ea79SLois Curfman McInnes 39266976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat, MatAssemblyType mode) 393d71ae5a4SJacob Faibussowitsch { 39439ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 39513f74950SBarry Smith PetscInt i, *row, *col, flg, j, rstart, ncols; 39613f74950SBarry Smith PetscMPIInt n; 39787828ca2SBarry Smith PetscScalar *val; 3988965ea79SLois Curfman McInnes 3993a40ed3dSBarry Smith PetscFunctionBegin; 400910cf402Sprj- if (!mdn->donotstash && !mat->nooffprocentries) { 4018965ea79SLois Curfman McInnes /* wait on receives */ 4027ef1d9bdSSatish Balay while (1) { 4039566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 4047ef1d9bdSSatish Balay if (!flg) break; 4058965ea79SLois Curfman McInnes 4067ef1d9bdSSatish Balay for (i = 0; i < n;) { 4077ef1d9bdSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 4082205254eSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 4092205254eSKarl Rupp if (row[j] != rstart) break; 4102205254eSKarl Rupp } 4117ef1d9bdSSatish Balay if (j < n) ncols = j - i; 4127ef1d9bdSSatish Balay else ncols = n - i; 4137ef1d9bdSSatish Balay /* Now assemble all these values with a single function call */ 4149566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIDense(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode)); 4157ef1d9bdSSatish Balay i = j; 4168965ea79SLois Curfman McInnes } 4177ef1d9bdSSatish Balay } 4189566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 419910cf402Sprj- } 4208965ea79SLois Curfman McInnes 4219566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mdn->A, mode)); 4229566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mdn->A, mode)); 4233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4248965ea79SLois Curfman McInnes } 4258965ea79SLois Curfman McInnes 42666976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIDense(Mat A) 427d71ae5a4SJacob Faibussowitsch { 42839ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense *)A->data; 4293a40ed3dSBarry Smith 4303a40ed3dSBarry Smith PetscFunctionBegin; 4319566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 4323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4338965ea79SLois Curfman McInnes } 4348965ea79SLois Curfman McInnes 43566976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIDense(Mat A, PetscInt n, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 436d71ae5a4SJacob Faibussowitsch { 43739ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense *)A->data; 438637a0070SStefano Zampini PetscInt i, len, *lrows; 439637a0070SStefano Zampini 440637a0070SStefano Zampini PetscFunctionBegin; 441637a0070SStefano Zampini /* get locally owned rows */ 4429566063dSJacob Faibussowitsch PetscCall(PetscLayoutMapLocal(A->rmap, n, rows, &len, &lrows, NULL)); 443dd8e379bSPierre Jolivet /* fix right-hand side if needed */ 444637a0070SStefano Zampini if (x && b) { 44597b48c8fSBarry Smith const PetscScalar *xx; 44697b48c8fSBarry Smith PetscScalar *bb; 4478965ea79SLois Curfman McInnes 4489566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 4499566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(b, &bb)); 450637a0070SStefano Zampini for (i = 0; i < len; ++i) bb[lrows[i]] = diag * xx[lrows[i]]; 4519566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 4529566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(b, &bb)); 45397b48c8fSBarry Smith } 4549566063dSJacob Faibussowitsch PetscCall(MatZeroRows(l->A, len, lrows, 0.0, NULL, NULL)); 455e2eb51b1SBarry Smith if (diag != 0.0) { 456637a0070SStefano Zampini Vec d; 457b9679d65SBarry Smith 4589566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(A, NULL, &d)); 4599566063dSJacob Faibussowitsch PetscCall(VecSet(d, diag)); 4609566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet(A, d, INSERT_VALUES)); 4619566063dSJacob Faibussowitsch PetscCall(VecDestroy(&d)); 462b9679d65SBarry Smith } 4639566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 4643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4658965ea79SLois Curfman McInnes } 4668965ea79SLois Curfman McInnes 4670be0d8bdSHansol Suh PETSC_INTERN PetscErrorCode MatMult_SeqDense(Mat, Vec, Vec); 4680be0d8bdSHansol Suh PETSC_INTERN PetscErrorCode MatMultAdd_SeqDense(Mat, Vec, Vec, Vec); 4690be0d8bdSHansol Suh PETSC_INTERN PetscErrorCode MatMultTranspose_SeqDense(Mat, Vec, Vec); 4700be0d8bdSHansol Suh PETSC_INTERN PetscErrorCode MatMultTransposeAdd_SeqDense(Mat, Vec, Vec, Vec); 4710be0d8bdSHansol Suh 47266976f2fSJacob Faibussowitsch static PetscErrorCode MatMult_MPIDense(Mat mat, Vec xx, Vec yy) 473d71ae5a4SJacob Faibussowitsch { 47439ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 475637a0070SStefano Zampini const PetscScalar *ax; 476637a0070SStefano Zampini PetscScalar *ay; 477d0295fc0SJunchao Zhang PetscMemType axmtype, aymtype; 478c456f294SBarry Smith 4793a40ed3dSBarry Smith PetscFunctionBegin; 4806f08ad05SPierre Jolivet if (!mdn->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(mat)); 4819566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(xx, &ax, &axmtype)); 4829566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(mdn->lvec, &ay, &aymtype)); 4839566063dSJacob Faibussowitsch PetscCall(PetscSFBcastWithMemTypeBegin(mdn->Mvctx, MPIU_SCALAR, axmtype, ax, aymtype, ay, MPI_REPLACE)); 4849566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(mdn->Mvctx, MPIU_SCALAR, ax, ay, MPI_REPLACE)); 4859566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(mdn->lvec, &ay)); 4869566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(xx, &ax)); 4879566063dSJacob Faibussowitsch PetscCall((*mdn->A->ops->mult)(mdn->A, mdn->lvec, yy)); 4883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4898965ea79SLois Curfman McInnes } 4908965ea79SLois Curfman McInnes 4910be0d8bdSHansol Suh static PetscErrorCode MatMultAddColumnRange_MPIDense(Mat mat, Vec xx, Vec yy, Vec zz, PetscInt c_start, PetscInt c_end) 4920be0d8bdSHansol Suh { 4930be0d8bdSHansol Suh Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 4940be0d8bdSHansol Suh const PetscScalar *ax; 4950be0d8bdSHansol Suh PetscScalar *ay; 4960be0d8bdSHansol Suh PetscMemType axmtype, aymtype; 4970be0d8bdSHansol Suh 4980be0d8bdSHansol Suh PetscFunctionBegin; 4990be0d8bdSHansol Suh if (!mdn->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(mat)); 5000be0d8bdSHansol Suh PetscCall(VecGetArrayReadAndMemType(xx, &ax, &axmtype)); 5010be0d8bdSHansol Suh PetscCall(VecGetArrayAndMemType(mdn->lvec, &ay, &aymtype)); 5020be0d8bdSHansol Suh PetscCall(PetscSFBcastWithMemTypeBegin(mdn->Mvctx, MPIU_SCALAR, axmtype, ax, aymtype, ay, MPI_REPLACE)); 5030be0d8bdSHansol Suh PetscCall(PetscSFBcastEnd(mdn->Mvctx, MPIU_SCALAR, ax, ay, MPI_REPLACE)); 5040be0d8bdSHansol Suh PetscCall(VecRestoreArrayAndMemType(mdn->lvec, &ay)); 5050be0d8bdSHansol Suh PetscCall(VecRestoreArrayReadAndMemType(xx, &ax)); 5060be0d8bdSHansol Suh PetscUseMethod(mdn->A, "MatMultAddColumnRange_C", (Mat, Vec, Vec, Vec, PetscInt, PetscInt), (mdn->A, mdn->lvec, yy, zz, c_start, c_end)); 5070be0d8bdSHansol Suh PetscFunctionReturn(PETSC_SUCCESS); 5080be0d8bdSHansol Suh } 5090be0d8bdSHansol Suh 51066976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIDense(Mat mat, Vec xx, Vec yy, Vec zz) 511d71ae5a4SJacob Faibussowitsch { 51239ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 513637a0070SStefano Zampini const PetscScalar *ax; 514637a0070SStefano Zampini PetscScalar *ay; 515d0295fc0SJunchao Zhang PetscMemType axmtype, aymtype; 516c456f294SBarry Smith 5173a40ed3dSBarry Smith PetscFunctionBegin; 5186f08ad05SPierre Jolivet if (!mdn->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(mat)); 5199566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(xx, &ax, &axmtype)); 5209566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(mdn->lvec, &ay, &aymtype)); 5219566063dSJacob Faibussowitsch PetscCall(PetscSFBcastWithMemTypeBegin(mdn->Mvctx, MPIU_SCALAR, axmtype, ax, aymtype, ay, MPI_REPLACE)); 5229566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(mdn->Mvctx, MPIU_SCALAR, ax, ay, MPI_REPLACE)); 5239566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(mdn->lvec, &ay)); 5249566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(xx, &ax)); 5259566063dSJacob Faibussowitsch PetscCall((*mdn->A->ops->multadd)(mdn->A, mdn->lvec, yy, zz)); 5263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5278965ea79SLois Curfman McInnes } 5288965ea79SLois Curfman McInnes 5290be0d8bdSHansol Suh static PetscErrorCode MatMultHermitianTransposeColumnRange_MPIDense(Mat A, Vec xx, Vec yy, PetscInt c_start, PetscInt c_end) 5300be0d8bdSHansol Suh { 5310be0d8bdSHansol Suh Mat_MPIDense *a = (Mat_MPIDense *)A->data; 5320be0d8bdSHansol Suh const PetscScalar *ax; 5330be0d8bdSHansol Suh PetscScalar *ay; 5340be0d8bdSHansol Suh PetscMemType axmtype, aymtype; 5350be0d8bdSHansol Suh 5360be0d8bdSHansol Suh PetscFunctionBegin; 5370be0d8bdSHansol Suh if (!a->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); 5380be0d8bdSHansol Suh PetscCall(VecSet(yy, 0.0)); 5390be0d8bdSHansol Suh PetscUseMethod(a->A, "MatMultHermitianTransposeColumnRange_C", (Mat, Vec, Vec, PetscInt, PetscInt), (a->A, xx, a->lvec, c_start, c_end)); 5400be0d8bdSHansol Suh PetscCall(VecGetArrayReadAndMemType(a->lvec, &ax, &axmtype)); 5410be0d8bdSHansol Suh PetscCall(VecGetArrayAndMemType(yy, &ay, &aymtype)); 5420be0d8bdSHansol Suh PetscCall(PetscSFReduceWithMemTypeBegin(a->Mvctx, MPIU_SCALAR, axmtype, ax, aymtype, ay, MPIU_SUM)); 5430be0d8bdSHansol Suh PetscCall(PetscSFReduceEnd(a->Mvctx, MPIU_SCALAR, ax, ay, MPIU_SUM)); 5440be0d8bdSHansol Suh PetscCall(VecRestoreArrayReadAndMemType(a->lvec, &ax)); 5450be0d8bdSHansol Suh PetscCall(VecRestoreArrayAndMemType(yy, &ay)); 5460be0d8bdSHansol Suh PetscFunctionReturn(PETSC_SUCCESS); 5470be0d8bdSHansol Suh } 5480be0d8bdSHansol Suh 549459e8d23SBlanca Mellado Pinto static PetscErrorCode MatMultTransposeKernel_MPIDense(Mat A, Vec xx, Vec yy, PetscBool herm) 550d71ae5a4SJacob Faibussowitsch { 551096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense *)A->data; 552637a0070SStefano Zampini const PetscScalar *ax; 553637a0070SStefano Zampini PetscScalar *ay; 554d0295fc0SJunchao Zhang PetscMemType axmtype, aymtype; 5554d86920dSPierre Jolivet 5563a40ed3dSBarry Smith PetscFunctionBegin; 5576f08ad05SPierre Jolivet if (!a->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); 5589566063dSJacob Faibussowitsch PetscCall(VecSet(yy, 0.0)); 559459e8d23SBlanca Mellado Pinto if (herm) PetscCall((*a->A->ops->multhermitiantranspose)(a->A, xx, a->lvec)); 560459e8d23SBlanca Mellado Pinto else PetscCall((*a->A->ops->multtranspose)(a->A, xx, a->lvec)); 5619566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(a->lvec, &ax, &axmtype)); 5629566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(yy, &ay, &aymtype)); 5639566063dSJacob Faibussowitsch PetscCall(PetscSFReduceWithMemTypeBegin(a->Mvctx, MPIU_SCALAR, axmtype, ax, aymtype, ay, MPIU_SUM)); 5649566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(a->Mvctx, MPIU_SCALAR, ax, ay, MPIU_SUM)); 5659566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(a->lvec, &ax)); 5669566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(yy, &ay)); 5673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 568096963f5SLois Curfman McInnes } 569096963f5SLois Curfman McInnes 5700be0d8bdSHansol Suh static PetscErrorCode MatMultHermitianTransposeAddColumnRange_MPIDense(Mat A, Vec xx, Vec yy, Vec zz, PetscInt c_start, PetscInt c_end) 5710be0d8bdSHansol Suh { 5720be0d8bdSHansol Suh Mat_MPIDense *a = (Mat_MPIDense *)A->data; 5730be0d8bdSHansol Suh const PetscScalar *ax; 5740be0d8bdSHansol Suh PetscScalar *ay; 5750be0d8bdSHansol Suh PetscMemType axmtype, aymtype; 5760be0d8bdSHansol Suh 5770be0d8bdSHansol Suh PetscFunctionBegin; 5780be0d8bdSHansol Suh if (!a->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); 5790be0d8bdSHansol Suh PetscCall(VecCopy(yy, zz)); 5800be0d8bdSHansol Suh PetscMPIInt rank; 5810be0d8bdSHansol Suh PetscCallMPI(MPI_Comm_rank(MPI_COMM_WORLD, &rank)); 5820be0d8bdSHansol Suh PetscUseMethod(a->A, "MatMultHermitianTransposeColumnRange_C", (Mat, Vec, Vec, PetscInt, PetscInt), (a->A, xx, a->lvec, c_start, c_end)); 5830be0d8bdSHansol Suh PetscCall(VecGetArrayReadAndMemType(a->lvec, &ax, &axmtype)); 5840be0d8bdSHansol Suh PetscCall(VecGetArrayAndMemType(zz, &ay, &aymtype)); 5850be0d8bdSHansol Suh PetscCall(PetscSFReduceWithMemTypeBegin(a->Mvctx, MPIU_SCALAR, axmtype, ax, aymtype, ay, MPIU_SUM)); 5860be0d8bdSHansol Suh PetscCall(PetscSFReduceEnd(a->Mvctx, MPIU_SCALAR, ax, ay, MPIU_SUM)); 5870be0d8bdSHansol Suh PetscCall(VecRestoreArrayReadAndMemType(a->lvec, &ax)); 5880be0d8bdSHansol Suh PetscCall(VecRestoreArrayAndMemType(zz, &ay)); 5890be0d8bdSHansol Suh PetscFunctionReturn(PETSC_SUCCESS); 5900be0d8bdSHansol Suh } 5910be0d8bdSHansol Suh 592459e8d23SBlanca Mellado Pinto static PetscErrorCode MatMultTransposeAddKernel_MPIDense(Mat A, Vec xx, Vec yy, Vec zz, PetscBool herm) 593d71ae5a4SJacob Faibussowitsch { 594096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense *)A->data; 595637a0070SStefano Zampini const PetscScalar *ax; 596637a0070SStefano Zampini PetscScalar *ay; 597d0295fc0SJunchao Zhang PetscMemType axmtype, aymtype; 598096963f5SLois Curfman McInnes 5993a40ed3dSBarry Smith PetscFunctionBegin; 6006f08ad05SPierre Jolivet if (!a->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); 6019566063dSJacob Faibussowitsch PetscCall(VecCopy(yy, zz)); 602459e8d23SBlanca Mellado Pinto if (herm) PetscCall((*a->A->ops->multhermitiantranspose)(a->A, xx, a->lvec)); 603459e8d23SBlanca Mellado Pinto else PetscCall((*a->A->ops->multtranspose)(a->A, xx, a->lvec)); 6049566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(a->lvec, &ax, &axmtype)); 6059566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(zz, &ay, &aymtype)); 6069566063dSJacob Faibussowitsch PetscCall(PetscSFReduceWithMemTypeBegin(a->Mvctx, MPIU_SCALAR, axmtype, ax, aymtype, ay, MPIU_SUM)); 6079566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(a->Mvctx, MPIU_SCALAR, ax, ay, MPIU_SUM)); 6089566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(a->lvec, &ax)); 6099566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(zz, &ay)); 6103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 611096963f5SLois Curfman McInnes } 612096963f5SLois Curfman McInnes 613459e8d23SBlanca Mellado Pinto static PetscErrorCode MatMultTranspose_MPIDense(Mat A, Vec xx, Vec yy) 614459e8d23SBlanca Mellado Pinto { 615459e8d23SBlanca Mellado Pinto PetscFunctionBegin; 616459e8d23SBlanca Mellado Pinto PetscCall(MatMultTransposeKernel_MPIDense(A, xx, yy, PETSC_FALSE)); 617459e8d23SBlanca Mellado Pinto PetscFunctionReturn(PETSC_SUCCESS); 618459e8d23SBlanca Mellado Pinto } 619459e8d23SBlanca Mellado Pinto 620459e8d23SBlanca Mellado Pinto static PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A, Vec xx, Vec yy, Vec zz) 621459e8d23SBlanca Mellado Pinto { 622459e8d23SBlanca Mellado Pinto PetscFunctionBegin; 623459e8d23SBlanca Mellado Pinto PetscCall(MatMultTransposeAddKernel_MPIDense(A, xx, yy, zz, PETSC_FALSE)); 624459e8d23SBlanca Mellado Pinto PetscFunctionReturn(PETSC_SUCCESS); 625459e8d23SBlanca Mellado Pinto } 626459e8d23SBlanca Mellado Pinto 627459e8d23SBlanca Mellado Pinto static PetscErrorCode MatMultHermitianTranspose_MPIDense(Mat A, Vec xx, Vec yy) 628459e8d23SBlanca Mellado Pinto { 629459e8d23SBlanca Mellado Pinto PetscFunctionBegin; 630459e8d23SBlanca Mellado Pinto PetscCall(MatMultTransposeKernel_MPIDense(A, xx, yy, PETSC_TRUE)); 631459e8d23SBlanca Mellado Pinto PetscFunctionReturn(PETSC_SUCCESS); 632459e8d23SBlanca Mellado Pinto } 633459e8d23SBlanca Mellado Pinto 634459e8d23SBlanca Mellado Pinto static PetscErrorCode MatMultHermitianTransposeAdd_MPIDense(Mat A, Vec xx, Vec yy, Vec zz) 635459e8d23SBlanca Mellado Pinto { 636459e8d23SBlanca Mellado Pinto PetscFunctionBegin; 637459e8d23SBlanca Mellado Pinto PetscCall(MatMultTransposeAddKernel_MPIDense(A, xx, yy, zz, PETSC_TRUE)); 638459e8d23SBlanca Mellado Pinto PetscFunctionReturn(PETSC_SUCCESS); 639459e8d23SBlanca Mellado Pinto } 640459e8d23SBlanca Mellado Pinto 641d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetDiagonal_MPIDense(Mat A, Vec v) 642d71ae5a4SJacob Faibussowitsch { 64339ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense *)A->data; 64479560b15SJacob Faibussowitsch PetscInt lda, len, i, nl, ng, m = A->rmap->n, radd; 64579560b15SJacob Faibussowitsch PetscScalar *x; 646637a0070SStefano Zampini const PetscScalar *av; 647ed3cc1f0SBarry Smith 6483a40ed3dSBarry Smith PetscFunctionBegin; 6499566063dSJacob Faibussowitsch PetscCall(VecGetArray(v, &x)); 65079560b15SJacob Faibussowitsch PetscCall(VecGetSize(v, &ng)); 65179560b15SJacob Faibussowitsch PetscCheck(ng == A->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Nonconforming mat and vec"); 65279560b15SJacob Faibussowitsch PetscCall(VecGetLocalSize(v, &nl)); 653d0f46423SBarry Smith len = PetscMin(a->A->rmap->n, a->A->cmap->n); 654d0f46423SBarry Smith radd = A->rmap->rstart * m; 6559566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A, &av)); 6569566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &lda)); 657ad540459SPierre Jolivet for (i = 0; i < len; i++) x[i] = av[radd + i * lda + i]; 6589566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A, &av)); 6590be0d8bdSHansol Suh if (nl - i > 0) PetscCall(PetscArrayzero(x + i, nl - i)); 6609566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v, &x)); 6613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6628965ea79SLois Curfman McInnes } 6638965ea79SLois Curfman McInnes 66466976f2fSJacob Faibussowitsch static PetscErrorCode MatDestroy_MPIDense(Mat mat) 665d71ae5a4SJacob Faibussowitsch { 6663501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 667ed3cc1f0SBarry Smith 6683a40ed3dSBarry Smith PetscFunctionBegin; 6693ba16761SJacob Faibussowitsch PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N)); 6709566063dSJacob Faibussowitsch PetscCall(MatStashDestroy_Private(&mat->stash)); 67128b400f6SJacob Faibussowitsch PetscCheck(!mdn->vecinuse, PetscObjectComm((PetscObject)mat), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 67228b400f6SJacob Faibussowitsch PetscCheck(!mdn->matinuse, PetscObjectComm((PetscObject)mat), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 6739566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mdn->A)); 6749566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mdn->lvec)); 6759566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&mdn->Mvctx)); 6769566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mdn->cvec)); 6779566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mdn->cmat)); 67801b82886SBarry Smith 6799566063dSJacob Faibussowitsch PetscCall(PetscFree(mat->data)); 6809566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 6818baccfbdSHong Zhang 6829566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetLDA_C", NULL)); 6839566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseSetLDA_C", NULL)); 6849566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetArray_C", NULL)); 6859566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreArray_C", NULL)); 6869566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetArrayRead_C", NULL)); 6879566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreArrayRead_C", NULL)); 6889566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetArrayWrite_C", NULL)); 6899566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreArrayWrite_C", NULL)); 6909566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDensePlaceArray_C", NULL)); 6919566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseResetArray_C", NULL)); 6929566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseReplaceArray_C", NULL)); 6939566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpidense_C", NULL)); 6949566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_mpiaij_C", NULL)); 6958baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 6969566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_elemental_C", NULL)); 6978baccfbdSHong Zhang #endif 698d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 6999566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_scalapack_C", NULL)); 700d24d4204SJose E. Roman #endif 7019566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIDenseSetPreallocation_C", NULL)); 7029566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpidense_C", NULL)); 7039566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidense_mpiaij_C", NULL)); 7046718818eSStefano Zampini #if defined(PETSC_HAVE_CUDA) 7059566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaijcusparse_mpidense_C", NULL)); 7069566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidense_mpiaijcusparse_C", NULL)); 7072e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_mpidensecuda_C", NULL)); 7082e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidensecuda_mpidense_C", NULL)); 7092e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpidensecuda_C", NULL)); 7102e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaijcusparse_mpidensecuda_C", NULL)); 7112e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidensecuda_mpiaij_C", NULL)); 7122e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidensecuda_mpiaijcusparse_C", NULL)); 7132e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDAGetArray_C", NULL)); 7142e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDAGetArrayRead_C", NULL)); 7152e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDAGetArrayWrite_C", NULL)); 7162e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDARestoreArray_C", NULL)); 7172e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDARestoreArrayRead_C", NULL)); 7182e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDARestoreArrayWrite_C", NULL)); 7192e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDAPlaceArray_C", NULL)); 7202e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDAResetArray_C", NULL)); 7212e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDAReplaceArray_C", NULL)); 7223d9668e3SJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDASetPreallocation_C", NULL)); 7236718818eSStefano Zampini #endif 72447d993e7Ssuyashtn #if defined(PETSC_HAVE_HIP) 72547d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaijhipsparse_mpidense_C", NULL)); 72647d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidense_mpiaijhipsparse_C", NULL)); 72747d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_mpidensehip_C", NULL)); 72847d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidensehip_mpidense_C", NULL)); 72947d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpidensehip_C", NULL)); 73047d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaijhipsparse_mpidensehip_C", NULL)); 73147d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidensehip_mpiaij_C", NULL)); 73247d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidensehip_mpiaijhipsparse_C", NULL)); 73347d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPGetArray_C", NULL)); 73447d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPGetArrayRead_C", NULL)); 73547d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPGetArrayWrite_C", NULL)); 73647d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPRestoreArray_C", NULL)); 73747d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPRestoreArrayRead_C", NULL)); 73847d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPRestoreArrayWrite_C", NULL)); 73947d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPPlaceArray_C", NULL)); 74047d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPResetArray_C", NULL)); 74147d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPReplaceArray_C", NULL)); 7423d9668e3SJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPSetPreallocation_C", NULL)); 74347d993e7Ssuyashtn #endif 7449566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumn_C", NULL)); 7459566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumn_C", NULL)); 7469566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVec_C", NULL)); 7479566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVec_C", NULL)); 7489566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVecRead_C", NULL)); 7499566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVecRead_C", NULL)); 7509566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVecWrite_C", NULL)); 7519566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVecWrite_C", NULL)); 7529566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetSubMatrix_C", NULL)); 7539566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreSubMatrix_C", NULL)); 7540be0d8bdSHansol Suh PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMultAddColumnRange_C", NULL)); 7550be0d8bdSHansol Suh PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMultHermitianTransposeColumnRange_C", NULL)); 7560be0d8bdSHansol Suh PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMultHermitianTransposeAddColumnRange_C", NULL)); 757f8103e6bSStefano Zampini 758f8103e6bSStefano Zampini PetscCall(PetscObjectCompose((PetscObject)mat, "DiagonalBlock", NULL)); 7593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7608965ea79SLois Curfman McInnes } 76139ddd567SLois Curfman McInnes 7629804daf3SBarry Smith #include <petscdraw.h> 763d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) 764d71ae5a4SJacob Faibussowitsch { 76539ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 766616b8fbbSStefano Zampini PetscMPIInt rank; 76719fd82e9SBarry Smith PetscViewerType vtype; 768ace3abfcSBarry Smith PetscBool iascii, isdraw; 769b0a32e0cSBarry Smith PetscViewer sviewer; 770f3ef73ceSBarry Smith PetscViewerFormat format; 7718965ea79SLois Curfman McInnes 7723a40ed3dSBarry Smith PetscFunctionBegin; 7739566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 7749566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 7759566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 77632077d6dSBarry Smith if (iascii) { 7779566063dSJacob Faibussowitsch PetscCall(PetscViewerGetType(viewer, &vtype)); 7789566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 779456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 7804e220ebcSLois Curfman McInnes MatInfo info; 7819566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 7829566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 7839371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, " [%d] local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %" PetscInt_FMT " \n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 7849371c9d4SSatish Balay (PetscInt)info.memory)); 7859566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 7869566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 7876f08ad05SPierre Jolivet if (mdn->Mvctx) PetscCall(PetscSFView(mdn->Mvctx, viewer)); 7883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 789fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 7903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7918965ea79SLois Curfman McInnes } 792f1af5d2fSBarry Smith } else if (isdraw) { 793b0a32e0cSBarry Smith PetscDraw draw; 794ace3abfcSBarry Smith PetscBool isnull; 795f1af5d2fSBarry Smith 7969566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 7979566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 7983ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 799f1af5d2fSBarry Smith } 80077ed5343SBarry Smith 8017da1fb6eSBarry Smith { 8028965ea79SLois Curfman McInnes /* assemble the entire matrix onto first processor. */ 8038965ea79SLois Curfman McInnes Mat A; 804d0f46423SBarry Smith PetscInt M = mat->rmap->N, N = mat->cmap->N, m, row, i, nz; 805ba8c8a56SBarry Smith PetscInt *cols; 806ba8c8a56SBarry Smith PetscScalar *vals; 8078965ea79SLois Curfman McInnes 8089566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A)); 809dd400576SPatrick Sanan if (rank == 0) { 8109566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, M, N, M, N)); 8113a40ed3dSBarry Smith } else { 8129566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, 0, 0, M, N)); 8138965ea79SLois Curfman McInnes } 8147adad957SLisandro Dalcin /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */ 8159566063dSJacob Faibussowitsch PetscCall(MatSetType(A, MATMPIDENSE)); 8169566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(A, NULL)); 8178965ea79SLois Curfman McInnes 81839ddd567SLois Curfman McInnes /* Copy the matrix ... This isn't the most efficient means, 81939ddd567SLois Curfman McInnes but it's quick for now */ 82051022da4SBarry Smith A->insertmode = INSERT_VALUES; 8212205254eSKarl Rupp 8222205254eSKarl Rupp row = mat->rmap->rstart; 8232205254eSKarl Rupp m = mdn->A->rmap->n; 8248965ea79SLois Curfman McInnes for (i = 0; i < m; i++) { 8259566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIDense(mat, row, &nz, &cols, &vals)); 8269566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIDense(A, 1, &row, nz, cols, vals, INSERT_VALUES)); 8279566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIDense(mat, row, &nz, &cols, &vals)); 82839ddd567SLois Curfman McInnes row++; 8298965ea79SLois Curfman McInnes } 8308965ea79SLois Curfman McInnes 8319566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 8329566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 8339566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 834dd400576SPatrick Sanan if (rank == 0) { 835f4f49eeaSPierre Jolivet PetscCall(PetscObjectSetName((PetscObject)((Mat_MPIDense *)A->data)->A, ((PetscObject)mat)->name)); 836f4f49eeaSPierre Jolivet PetscCall(MatView_SeqDense(((Mat_MPIDense *)A->data)->A, sviewer)); 8378965ea79SLois Curfman McInnes } 8389566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 8399566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 8408965ea79SLois Curfman McInnes } 8413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8428965ea79SLois Curfman McInnes } 8438965ea79SLois Curfman McInnes 84466976f2fSJacob Faibussowitsch static PetscErrorCode MatView_MPIDense(Mat mat, PetscViewer viewer) 845d71ae5a4SJacob Faibussowitsch { 846ace3abfcSBarry Smith PetscBool iascii, isbinary, isdraw, issocket; 8478965ea79SLois Curfman McInnes 848433994e6SBarry Smith PetscFunctionBegin; 8499566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 8509566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 8519566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 8529566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 8530f5bd95cSBarry Smith 85432077d6dSBarry Smith if (iascii || issocket || isdraw) { 8559566063dSJacob Faibussowitsch PetscCall(MatView_MPIDense_ASCIIorDraworSocket(mat, viewer)); 8561baa6e33SBarry Smith } else if (isbinary) PetscCall(MatView_Dense_Binary(mat, viewer)); 8573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8588965ea79SLois Curfman McInnes } 8598965ea79SLois Curfman McInnes 86066976f2fSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIDense(Mat A, MatInfoType flag, MatInfo *info) 861d71ae5a4SJacob Faibussowitsch { 8623501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense *)A->data; 8633501a2bdSLois Curfman McInnes Mat mdn = mat->A; 8643966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 8658965ea79SLois Curfman McInnes 8663a40ed3dSBarry Smith PetscFunctionBegin; 8674e220ebcSLois Curfman McInnes info->block_size = 1.0; 8682205254eSKarl Rupp 8699566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mdn, MAT_LOCAL, info)); 8702205254eSKarl Rupp 8719371c9d4SSatish Balay isend[0] = info->nz_used; 8729371c9d4SSatish Balay isend[1] = info->nz_allocated; 8739371c9d4SSatish Balay isend[2] = info->nz_unneeded; 8749371c9d4SSatish Balay isend[3] = info->memory; 8759371c9d4SSatish Balay isend[4] = info->mallocs; 8768965ea79SLois Curfman McInnes if (flag == MAT_LOCAL) { 8774e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 8784e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 8794e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 8804e220ebcSLois Curfman McInnes info->memory = isend[3]; 8814e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 8828965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 8831c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)A))); 8842205254eSKarl Rupp 8854e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 8864e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 8874e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 8884e220ebcSLois Curfman McInnes info->memory = irecv[3]; 8894e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 8908965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 8911c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)A))); 8922205254eSKarl Rupp 8934e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 8944e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 8954e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 8964e220ebcSLois Curfman McInnes info->memory = irecv[3]; 8974e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 8988965ea79SLois Curfman McInnes } 8994e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 9004e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 9014e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 9023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9038965ea79SLois Curfman McInnes } 9048965ea79SLois Curfman McInnes 90566976f2fSJacob Faibussowitsch static PetscErrorCode MatSetOption_MPIDense(Mat A, MatOption op, PetscBool flg) 906d71ae5a4SJacob Faibussowitsch { 90739ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense *)A->data; 9088965ea79SLois Curfman McInnes 9093a40ed3dSBarry Smith PetscFunctionBegin; 91012c028f9SKris Buschelman switch (op) { 911512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 91212c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 91312c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 91443674050SBarry Smith MatCheckPreallocated(A, 1); 9159566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 91612c028f9SKris Buschelman break; 91712c028f9SKris Buschelman case MAT_ROW_ORIENTED: 91843674050SBarry Smith MatCheckPreallocated(A, 1); 9194e0d8c25SBarry Smith a->roworiented = flg; 9209566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 92112c028f9SKris Buschelman break; 9228c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 92313fa8e87SLisandro Dalcin case MAT_KEEP_NONZERO_PATTERN: 92412c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 925d71ae5a4SJacob Faibussowitsch case MAT_SORTED_FULL: 926d71ae5a4SJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 927d71ae5a4SJacob Faibussowitsch break; 928d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES: 929d71ae5a4SJacob Faibussowitsch a->donotstash = flg; 930d71ae5a4SJacob Faibussowitsch break; 93177e54ba9SKris Buschelman case MAT_SYMMETRIC: 93277e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 9339a4540c5SBarry Smith case MAT_HERMITIAN: 9349a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 935b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 936b94d7dedSBarry Smith case MAT_SPD: 937600fe468SBarry Smith case MAT_IGNORE_LOWER_TRIANGULAR: 9385d7aebe8SStefano Zampini case MAT_IGNORE_ZERO_ENTRIES: 939b94d7dedSBarry Smith case MAT_SPD_ETERNAL: 940b94d7dedSBarry Smith /* if the diagonal matrix is square it inherits some of the properties above */ 9419566063dSJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 94277e54ba9SKris Buschelman break; 943d71ae5a4SJacob Faibussowitsch default: 944d71ae5a4SJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "unknown option %s", MatOptions[op]); 9453a40ed3dSBarry Smith } 9463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9478965ea79SLois Curfman McInnes } 9488965ea79SLois Curfman McInnes 94966976f2fSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIDense(Mat A, Vec ll, Vec rr) 950d71ae5a4SJacob Faibussowitsch { 9515b2fa520SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)A->data; 952637a0070SStefano Zampini const PetscScalar *l; 953637a0070SStefano Zampini PetscScalar x, *v, *vv, *r; 954637a0070SStefano Zampini PetscInt i, j, s2a, s3a, s2, s3, m = mdn->A->rmap->n, n = mdn->A->cmap->n, lda; 9555b2fa520SLois Curfman McInnes 9565b2fa520SLois Curfman McInnes PetscFunctionBegin; 9579566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(mdn->A, &vv)); 9589566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(mdn->A, &lda)); 9599566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, &s2, &s3)); 9605b2fa520SLois Curfman McInnes if (ll) { 9619566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll, &s2a)); 96208401ef6SPierre Jolivet PetscCheck(s2a == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Left scaling vector non-conforming local size, %" PetscInt_FMT " != %" PetscInt_FMT, s2a, s2); 9639566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(ll, &l)); 9645b2fa520SLois Curfman McInnes for (i = 0; i < m; i++) { 9655b2fa520SLois Curfman McInnes x = l[i]; 966637a0070SStefano Zampini v = vv + i; 9679371c9d4SSatish Balay for (j = 0; j < n; j++) { 9689371c9d4SSatish Balay (*v) *= x; 9699371c9d4SSatish Balay v += lda; 9709371c9d4SSatish Balay } 9715b2fa520SLois Curfman McInnes } 9729566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(ll, &l)); 9739566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(1.0 * n * m)); 9745b2fa520SLois Curfman McInnes } 9755b2fa520SLois Curfman McInnes if (rr) { 976637a0070SStefano Zampini const PetscScalar *ar; 977637a0070SStefano Zampini 9789566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &s3a)); 97908401ef6SPierre Jolivet PetscCheck(s3a == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Right scaling vec non-conforming local size, %" PetscInt_FMT " != %" PetscInt_FMT ".", s3a, s3); 9809566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(rr, &ar)); 9816f08ad05SPierre Jolivet if (!mdn->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); 9829566063dSJacob Faibussowitsch PetscCall(VecGetArray(mdn->lvec, &r)); 9839566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(mdn->Mvctx, MPIU_SCALAR, ar, r, MPI_REPLACE)); 9849566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(mdn->Mvctx, MPIU_SCALAR, ar, r, MPI_REPLACE)); 9859566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(rr, &ar)); 9865b2fa520SLois Curfman McInnes for (i = 0; i < n; i++) { 9875b2fa520SLois Curfman McInnes x = r[i]; 988637a0070SStefano Zampini v = vv + i * lda; 9892205254eSKarl Rupp for (j = 0; j < m; j++) (*v++) *= x; 9905b2fa520SLois Curfman McInnes } 9919566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mdn->lvec, &r)); 9929566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(1.0 * n * m)); 9935b2fa520SLois Curfman McInnes } 9949566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(mdn->A, &vv)); 9953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9965b2fa520SLois Curfman McInnes } 9975b2fa520SLois Curfman McInnes 99866976f2fSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIDense(Mat A, NormType type, PetscReal *nrm) 999d71ae5a4SJacob Faibussowitsch { 10003501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)A->data; 100113f74950SBarry Smith PetscInt i, j; 1002616b8fbbSStefano Zampini PetscMPIInt size; 1003329f5518SBarry Smith PetscReal sum = 0.0; 1004637a0070SStefano Zampini const PetscScalar *av, *v; 10053501a2bdSLois Curfman McInnes 10063a40ed3dSBarry Smith PetscFunctionBegin; 10079566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(mdn->A, &av)); 1008637a0070SStefano Zampini v = av; 10099566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 1010616b8fbbSStefano Zampini if (size == 1) { 10119566063dSJacob Faibussowitsch PetscCall(MatNorm(mdn->A, type, nrm)); 10123501a2bdSLois Curfman McInnes } else { 10133501a2bdSLois Curfman McInnes if (type == NORM_FROBENIUS) { 1014d0f46423SBarry Smith for (i = 0; i < mdn->A->cmap->n * mdn->A->rmap->n; i++) { 10159371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 10169371c9d4SSatish Balay v++; 10173501a2bdSLois Curfman McInnes } 10181c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A))); 10198f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 10209566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * mdn->A->cmap->n * mdn->A->rmap->n)); 10213a40ed3dSBarry Smith } else if (type == NORM_1) { 1022329f5518SBarry Smith PetscReal *tmp, *tmp2; 10239566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(A->cmap->N, &tmp, A->cmap->N, &tmp2)); 1024064f8208SBarry Smith *nrm = 0.0; 1025637a0070SStefano Zampini v = av; 1026d0f46423SBarry Smith for (j = 0; j < mdn->A->cmap->n; j++) { 1027d0f46423SBarry Smith for (i = 0; i < mdn->A->rmap->n; i++) { 10289371c9d4SSatish Balay tmp[j] += PetscAbsScalar(*v); 10299371c9d4SSatish Balay v++; 10303501a2bdSLois Curfman McInnes } 10313501a2bdSLois Curfman McInnes } 10321c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(tmp, tmp2, A->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A))); 1033d0f46423SBarry Smith for (j = 0; j < A->cmap->N; j++) { 1034064f8208SBarry Smith if (tmp2[j] > *nrm) *nrm = tmp2[j]; 10353501a2bdSLois Curfman McInnes } 10369566063dSJacob Faibussowitsch PetscCall(PetscFree2(tmp, tmp2)); 10379566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(A->cmap->n * A->rmap->n)); 10383a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 1039329f5518SBarry Smith PetscReal ntemp; 10409566063dSJacob Faibussowitsch PetscCall(MatNorm(mdn->A, type, &ntemp)); 10411c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&ntemp, nrm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A))); 1042ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "No support for two norm"); 10433501a2bdSLois Curfman McInnes } 10449566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(mdn->A, &av)); 10453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 10463501a2bdSLois Curfman McInnes } 10473501a2bdSLois Curfman McInnes 104866976f2fSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIDense(Mat A, MatReuse reuse, Mat *matout) 1049d71ae5a4SJacob Faibussowitsch { 10503501a2bdSLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense *)A->data; 10513501a2bdSLois Curfman McInnes Mat B; 1052d0f46423SBarry Smith PetscInt M = A->rmap->N, N = A->cmap->N, m, n, *rwork, rstart = A->rmap->rstart; 1053637a0070SStefano Zampini PetscInt j, i, lda; 105487828ca2SBarry Smith PetscScalar *v; 10553501a2bdSLois Curfman McInnes 10563a40ed3dSBarry Smith PetscFunctionBegin; 10577fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout)); 1058cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 10599566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 10609566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M)); 10619566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)A)->type_name)); 10629566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(B, NULL)); 1063637a0070SStefano Zampini } else B = *matout; 10643501a2bdSLois Curfman McInnes 10659371c9d4SSatish Balay m = a->A->rmap->n; 10669371c9d4SSatish Balay n = a->A->cmap->n; 10679566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A, (const PetscScalar **)&v)); 10689566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &lda)); 10699566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &rwork)); 10703501a2bdSLois Curfman McInnes for (i = 0; i < m; i++) rwork[i] = rstart + i; 10711acff37aSSatish Balay for (j = 0; j < n; j++) { 10729566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, 1, &j, m, rwork, v, INSERT_VALUES)); 10738e3a54c0SPierre Jolivet v = PetscSafePointerPlusOffset(v, lda); 10743501a2bdSLois Curfman McInnes } 10759566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A, (const PetscScalar **)&v)); 10769566063dSJacob Faibussowitsch PetscCall(PetscFree(rwork)); 10779566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 10789566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 1079cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) { 10803501a2bdSLois Curfman McInnes *matout = B; 10813501a2bdSLois Curfman McInnes } else { 10829566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(A, &B)); 10833501a2bdSLois Curfman McInnes } 10843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1085096963f5SLois Curfman McInnes } 1086096963f5SLois Curfman McInnes 10876849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat, MatDuplicateOption, Mat *); 108852c5f739Sprj- PETSC_INTERN PetscErrorCode MatScale_MPIDense(Mat, PetscScalar); 10898965ea79SLois Curfman McInnes 109066976f2fSJacob Faibussowitsch static PetscErrorCode MatSetUp_MPIDense(Mat A) 1091d71ae5a4SJacob Faibussowitsch { 1092273d9f13SBarry Smith PetscFunctionBegin; 10939566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->rmap)); 10949566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->cmap)); 109548a46eb9SPierre Jolivet if (!A->preallocated) PetscCall(MatMPIDenseSetPreallocation(A, NULL)); 10963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1097273d9f13SBarry Smith } 1098273d9f13SBarry Smith 109966976f2fSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIDense(Mat Y, PetscScalar alpha, Mat X, MatStructure str) 1100d71ae5a4SJacob Faibussowitsch { 1101488007eeSBarry Smith Mat_MPIDense *A = (Mat_MPIDense *)Y->data, *B = (Mat_MPIDense *)X->data; 1102488007eeSBarry Smith 1103488007eeSBarry Smith PetscFunctionBegin; 11049566063dSJacob Faibussowitsch PetscCall(MatAXPY(A->A, alpha, B->A, str)); 11053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1106488007eeSBarry Smith } 1107488007eeSBarry Smith 110866976f2fSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIDense(Mat mat) 1109d71ae5a4SJacob Faibussowitsch { 1110ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense *)mat->data; 1111ba337c44SJed Brown 1112ba337c44SJed Brown PetscFunctionBegin; 11139566063dSJacob Faibussowitsch PetscCall(MatConjugate(a->A)); 11143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1115ba337c44SJed Brown } 1116ba337c44SJed Brown 111766976f2fSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIDense(Mat A) 1118d71ae5a4SJacob Faibussowitsch { 1119ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense *)A->data; 1120ba337c44SJed Brown 1121ba337c44SJed Brown PetscFunctionBegin; 11229566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 11233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1124ba337c44SJed Brown } 1125ba337c44SJed Brown 112666976f2fSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIDense(Mat A) 1127d71ae5a4SJacob Faibussowitsch { 1128ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense *)A->data; 1129ba337c44SJed Brown 1130ba337c44SJed Brown PetscFunctionBegin; 11319566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 11323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1133ba337c44SJed Brown } 1134ba337c44SJed Brown 1135d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatGetColumnVector_MPIDense(Mat A, Vec v, PetscInt col) 1136d71ae5a4SJacob Faibussowitsch { 1137637a0070SStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 113849a6ff4bSBarry Smith 113949a6ff4bSBarry Smith PetscFunctionBegin; 114028b400f6SJacob Faibussowitsch PetscCheck(a->A, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Missing local matrix"); 114128b400f6SJacob Faibussowitsch PetscCheck(a->A->ops->getcolumnvector, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Missing get column operation"); 11429566063dSJacob Faibussowitsch PetscCall((*a->A->ops->getcolumnvector)(a->A, v, col)); 11433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 114449a6ff4bSBarry Smith } 114549a6ff4bSBarry Smith 1146857cbf51SRichard Tran Mills PETSC_INTERN PetscErrorCode MatGetColumnReductions_SeqDense(Mat, PetscInt, PetscReal *); 114752c5f739Sprj- 114866976f2fSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIDense(Mat A, PetscInt type, PetscReal *reductions) 1149d71ae5a4SJacob Faibussowitsch { 1150a873a8cdSSam Reynolds PetscInt i, m, n; 11510716a85fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense *)A->data; 11520716a85fSBarry Smith PetscReal *work; 11530716a85fSBarry Smith 11540716a85fSBarry Smith PetscFunctionBegin; 11559566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &n)); 11569566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &work)); 1157857cbf51SRichard Tran Mills if (type == REDUCTION_MEAN_REALPART) { 11589566063dSJacob Faibussowitsch PetscCall(MatGetColumnReductions_SeqDense(a->A, (PetscInt)REDUCTION_SUM_REALPART, work)); 1159857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_IMAGINARYPART) { 11609566063dSJacob Faibussowitsch PetscCall(MatGetColumnReductions_SeqDense(a->A, (PetscInt)REDUCTION_SUM_IMAGINARYPART, work)); 1161a873a8cdSSam Reynolds } else { 11629566063dSJacob Faibussowitsch PetscCall(MatGetColumnReductions_SeqDense(a->A, type, work)); 1163a873a8cdSSam Reynolds } 1164857cbf51SRichard Tran Mills if (type == NORM_2) { 11650716a85fSBarry Smith for (i = 0; i < n; i++) work[i] *= work[i]; 11660716a85fSBarry Smith } 1167857cbf51SRichard Tran Mills if (type == NORM_INFINITY) { 11681c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_MAX, A->hdr.comm)); 11690716a85fSBarry Smith } else { 11701c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_SUM, A->hdr.comm)); 11710716a85fSBarry Smith } 11729566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 1173857cbf51SRichard Tran Mills if (type == NORM_2) { 1174a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] = PetscSqrtReal(reductions[i]); 1175857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 1176a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] /= m; 11770716a85fSBarry Smith } 11783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 11790716a85fSBarry Smith } 11800716a85fSBarry Smith 1181d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetRandom_MPIDense(Mat x, PetscRandom rctx) 1182d71ae5a4SJacob Faibussowitsch { 118373a71a0fSBarry Smith Mat_MPIDense *d = (Mat_MPIDense *)x->data; 118473a71a0fSBarry Smith 118573a71a0fSBarry Smith PetscFunctionBegin; 11869566063dSJacob Faibussowitsch PetscCall(MatSetRandom(d->A, rctx)); 11873faff063SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 11883faff063SStefano Zampini x->offloadmask = d->A->offloadmask; 11893faff063SStefano Zampini #endif 11903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 119173a71a0fSBarry Smith } 119273a71a0fSBarry Smith 1193d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIDense(Mat A, PetscBool *missing, PetscInt *d) 1194d71ae5a4SJacob Faibussowitsch { 11953b49f96aSBarry Smith PetscFunctionBegin; 11963b49f96aSBarry Smith *missing = PETSC_FALSE; 11973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 11983b49f96aSBarry Smith } 11993b49f96aSBarry Smith 12004222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat, Mat, PetscReal, Mat); 1201cc48ffa7SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat, Mat, Mat); 12026718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat, Mat, PetscReal, Mat); 1203a1f9a5e6SStefano Zampini static PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat, Mat, Mat); 12046718818eSStefano Zampini static PetscErrorCode MatEqual_MPIDense(Mat, Mat, PetscBool *); 12056718818eSStefano Zampini static PetscErrorCode MatLoad_MPIDense(Mat, PetscViewer); 12065d8c7819SPierre Jolivet static PetscErrorCode MatProductSetFromOptions_MPIDense(Mat); 1207cc48ffa7SToby Isaac 120809dc0095SBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIDense, 120909dc0095SBarry Smith MatGetRow_MPIDense, 121009dc0095SBarry Smith MatRestoreRow_MPIDense, 121109dc0095SBarry Smith MatMult_MPIDense, 121297304618SKris Buschelman /* 4*/ MatMultAdd_MPIDense, 12137c922b88SBarry Smith MatMultTranspose_MPIDense, 12147c922b88SBarry Smith MatMultTransposeAdd_MPIDense, 1215f4259b30SLisandro Dalcin NULL, 1216f4259b30SLisandro Dalcin NULL, 1217f4259b30SLisandro Dalcin NULL, 1218f4259b30SLisandro Dalcin /* 10*/ NULL, 1219f4259b30SLisandro Dalcin NULL, 1220f4259b30SLisandro Dalcin NULL, 1221f4259b30SLisandro Dalcin NULL, 122209dc0095SBarry Smith MatTranspose_MPIDense, 122397304618SKris Buschelman /* 15*/ MatGetInfo_MPIDense, 12246e4ee0c6SHong Zhang MatEqual_MPIDense, 122509dc0095SBarry Smith MatGetDiagonal_MPIDense, 12265b2fa520SLois Curfman McInnes MatDiagonalScale_MPIDense, 122709dc0095SBarry Smith MatNorm_MPIDense, 122897304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPIDense, 122909dc0095SBarry Smith MatAssemblyEnd_MPIDense, 123009dc0095SBarry Smith MatSetOption_MPIDense, 123109dc0095SBarry Smith MatZeroEntries_MPIDense, 1232d519adbfSMatthew Knepley /* 24*/ MatZeroRows_MPIDense, 1233f4259b30SLisandro Dalcin NULL, 1234f4259b30SLisandro Dalcin NULL, 1235f4259b30SLisandro Dalcin NULL, 1236f4259b30SLisandro Dalcin NULL, 12374994cf47SJed Brown /* 29*/ MatSetUp_MPIDense, 1238f4259b30SLisandro Dalcin NULL, 1239f4259b30SLisandro Dalcin NULL, 1240c56a70eeSBarry Smith MatGetDiagonalBlock_MPIDense, 1241f4259b30SLisandro Dalcin NULL, 1242d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPIDense, 1243f4259b30SLisandro Dalcin NULL, 1244f4259b30SLisandro Dalcin NULL, 1245f4259b30SLisandro Dalcin NULL, 1246f4259b30SLisandro Dalcin NULL, 1247d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPIDense, 12487dae84e0SHong Zhang MatCreateSubMatrices_MPIDense, 1249f4259b30SLisandro Dalcin NULL, 125009dc0095SBarry Smith MatGetValues_MPIDense, 1251a76f77c3SStefano Zampini MatCopy_MPIDense, 1252f4259b30SLisandro Dalcin /* 44*/ NULL, 125309dc0095SBarry Smith MatScale_MPIDense, 12542f605a99SJose E. Roman MatShift_MPIDense, 1255f4259b30SLisandro Dalcin NULL, 1256f4259b30SLisandro Dalcin NULL, 125773a71a0fSBarry Smith /* 49*/ MatSetRandom_MPIDense, 1258f4259b30SLisandro Dalcin NULL, 1259f4259b30SLisandro Dalcin NULL, 1260f4259b30SLisandro Dalcin NULL, 1261f4259b30SLisandro Dalcin NULL, 1262f4259b30SLisandro Dalcin /* 54*/ NULL, 1263f4259b30SLisandro Dalcin NULL, 1264f4259b30SLisandro Dalcin NULL, 1265f4259b30SLisandro Dalcin NULL, 1266f4259b30SLisandro Dalcin NULL, 12677dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPIDense, 1268b9b97703SBarry Smith MatDestroy_MPIDense, 1269b9b97703SBarry Smith MatView_MPIDense, 1270f4259b30SLisandro Dalcin NULL, 1271f4259b30SLisandro Dalcin NULL, 1272f4259b30SLisandro Dalcin /* 64*/ NULL, 1273f4259b30SLisandro Dalcin NULL, 1274f4259b30SLisandro Dalcin NULL, 1275f4259b30SLisandro Dalcin NULL, 1276f4259b30SLisandro Dalcin NULL, 1277f4259b30SLisandro Dalcin /* 69*/ NULL, 1278f4259b30SLisandro Dalcin NULL, 1279f4259b30SLisandro Dalcin NULL, 1280f4259b30SLisandro Dalcin NULL, 1281f4259b30SLisandro Dalcin NULL, 1282f4259b30SLisandro Dalcin /* 74*/ NULL, 1283f4259b30SLisandro Dalcin NULL, 1284f4259b30SLisandro Dalcin NULL, 1285f4259b30SLisandro Dalcin NULL, 1286f4259b30SLisandro Dalcin NULL, 1287f4259b30SLisandro Dalcin /* 79*/ NULL, 1288f4259b30SLisandro Dalcin NULL, 1289f4259b30SLisandro Dalcin NULL, 1290f4259b30SLisandro Dalcin NULL, 12915bba2384SShri Abhyankar /* 83*/ MatLoad_MPIDense, 1292f4259b30SLisandro Dalcin NULL, 1293f4259b30SLisandro Dalcin NULL, 1294f4259b30SLisandro Dalcin NULL, 1295f4259b30SLisandro Dalcin NULL, 1296f4259b30SLisandro Dalcin NULL, 1297f4259b30SLisandro Dalcin /* 89*/ NULL, 1298f4259b30SLisandro Dalcin NULL, 1299f4259b30SLisandro Dalcin NULL, 1300f4259b30SLisandro Dalcin NULL, 1301f4259b30SLisandro Dalcin NULL, 1302f4259b30SLisandro Dalcin /* 94*/ NULL, 1303f4259b30SLisandro Dalcin NULL, 13046718818eSStefano Zampini MatMatTransposeMultSymbolic_MPIDense_MPIDense, 1305cc48ffa7SToby Isaac MatMatTransposeMultNumeric_MPIDense_MPIDense, 1306f4259b30SLisandro Dalcin NULL, 13074222ddf1SHong Zhang /* 99*/ MatProductSetFromOptions_MPIDense, 1308f4259b30SLisandro Dalcin NULL, 1309f4259b30SLisandro Dalcin NULL, 1310ba337c44SJed Brown MatConjugate_MPIDense, 1311f4259b30SLisandro Dalcin NULL, 1312f4259b30SLisandro Dalcin /*104*/ NULL, 1313ba337c44SJed Brown MatRealPart_MPIDense, 1314ba337c44SJed Brown MatImaginaryPart_MPIDense, 1315f4259b30SLisandro Dalcin NULL, 1316f4259b30SLisandro Dalcin NULL, 1317f4259b30SLisandro Dalcin /*109*/ NULL, 1318f4259b30SLisandro Dalcin NULL, 1319f4259b30SLisandro Dalcin NULL, 132049a6ff4bSBarry Smith MatGetColumnVector_MPIDense, 13213b49f96aSBarry Smith MatMissingDiagonal_MPIDense, 1322f4259b30SLisandro Dalcin /*114*/ NULL, 1323f4259b30SLisandro Dalcin NULL, 1324f4259b30SLisandro Dalcin NULL, 1325f4259b30SLisandro Dalcin NULL, 1326f4259b30SLisandro Dalcin NULL, 1327f4259b30SLisandro Dalcin /*119*/ NULL, 1328f4259b30SLisandro Dalcin NULL, 1329459e8d23SBlanca Mellado Pinto MatMultHermitianTranspose_MPIDense, 1330459e8d23SBlanca Mellado Pinto MatMultHermitianTransposeAdd_MPIDense, 1331f4259b30SLisandro Dalcin NULL, 1332f4259b30SLisandro Dalcin /*124*/ NULL, 1333a873a8cdSSam Reynolds MatGetColumnReductions_MPIDense, 1334f4259b30SLisandro Dalcin NULL, 1335f4259b30SLisandro Dalcin NULL, 1336f4259b30SLisandro Dalcin NULL, 1337f4259b30SLisandro Dalcin /*129*/ NULL, 1338f4259b30SLisandro Dalcin NULL, 13396718818eSStefano Zampini MatTransposeMatMultSymbolic_MPIDense_MPIDense, 1340cb20be35SHong Zhang MatTransposeMatMultNumeric_MPIDense_MPIDense, 1341f4259b30SLisandro Dalcin NULL, 1342f4259b30SLisandro Dalcin /*134*/ NULL, 1343f4259b30SLisandro Dalcin NULL, 1344f4259b30SLisandro Dalcin NULL, 1345f4259b30SLisandro Dalcin NULL, 1346f4259b30SLisandro Dalcin NULL, 1347f4259b30SLisandro Dalcin /*139*/ NULL, 1348f4259b30SLisandro Dalcin NULL, 1349f4259b30SLisandro Dalcin NULL, 1350f4259b30SLisandro Dalcin NULL, 1351f4259b30SLisandro Dalcin NULL, 13524222ddf1SHong Zhang MatCreateMPIMatConcatenateSeqMat_MPIDense, 1353f4259b30SLisandro Dalcin /*145*/ NULL, 1354f4259b30SLisandro Dalcin NULL, 135599a7f59eSMark Adams NULL, 135699a7f59eSMark Adams NULL, 13577fb60732SBarry Smith NULL, 1358dec0b466SHong Zhang /*150*/ NULL, 1359eede4a3fSMark Adams NULL, 1360dec0b466SHong Zhang NULL}; 13618965ea79SLois Curfman McInnes 136266976f2fSJacob Faibussowitsch static PetscErrorCode MatMPIDenseSetPreallocation_MPIDense(Mat mat, PetscScalar *data) 1363d71ae5a4SJacob Faibussowitsch { 1364637a0070SStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)mat->data; 136547d993e7Ssuyashtn MatType mtype = MATSEQDENSE; 1366a23d5eceSKris Buschelman 1367a23d5eceSKris Buschelman PetscFunctionBegin; 136828b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)mat), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 13699566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 13709566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 1371637a0070SStefano Zampini if (!a->A) { 13729566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &a->A)); 13739566063dSJacob Faibussowitsch PetscCall(MatSetSizes(a->A, mat->rmap->n, mat->cmap->N, mat->rmap->n, mat->cmap->N)); 1374637a0070SStefano Zampini } 137547d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) 137647d993e7Ssuyashtn PetscBool iscuda; 13779566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)mat, MATMPIDENSECUDA, &iscuda)); 137847d993e7Ssuyashtn if (iscuda) mtype = MATSEQDENSECUDA; 137947d993e7Ssuyashtn #endif 138047d993e7Ssuyashtn #if defined(PETSC_HAVE_HIP) 138147d993e7Ssuyashtn PetscBool iship; 138247d993e7Ssuyashtn PetscCall(PetscObjectTypeCompare((PetscObject)mat, MATMPIDENSEHIP, &iship)); 138347d993e7Ssuyashtn if (iship) mtype = MATSEQDENSEHIP; 138447d993e7Ssuyashtn #endif 138547d993e7Ssuyashtn PetscCall(MatSetType(a->A, mtype)); 13869566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(a->A, data)); 138747d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) 13883faff063SStefano Zampini mat->offloadmask = a->A->offloadmask; 13893faff063SStefano Zampini #endif 1390637a0070SStefano Zampini mat->preallocated = PETSC_TRUE; 13916f08ad05SPierre Jolivet mat->assembled = PETSC_TRUE; 13923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1393a23d5eceSKris Buschelman } 1394a23d5eceSKris Buschelman 1395d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIDense(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 1396d71ae5a4SJacob Faibussowitsch { 13974e29119aSPierre Jolivet Mat B, C; 13984e29119aSPierre Jolivet 13994e29119aSPierre Jolivet PetscFunctionBegin; 14009566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &C)); 14019566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqAIJ_SeqDense(C, MATSEQDENSE, MAT_INITIAL_MATRIX, &B)); 14029566063dSJacob Faibussowitsch PetscCall(MatDestroy(&C)); 14034e29119aSPierre Jolivet if (reuse == MAT_REUSE_MATRIX) { 14044e29119aSPierre Jolivet C = *newmat; 14054e29119aSPierre Jolivet } else C = NULL; 14069566063dSJacob Faibussowitsch PetscCall(MatCreateMPIMatConcatenateSeqMat(PetscObjectComm((PetscObject)A), B, A->cmap->n, !C ? MAT_INITIAL_MATRIX : MAT_REUSE_MATRIX, &C)); 14079566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 14084e29119aSPierre Jolivet if (reuse == MAT_INPLACE_MATRIX) { 14099566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &C)); 14104e29119aSPierre Jolivet } else if (reuse == MAT_INITIAL_MATRIX) *newmat = C; 14113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14124e29119aSPierre Jolivet } 14134e29119aSPierre Jolivet 141466976f2fSJacob Faibussowitsch static PetscErrorCode MatConvert_MPIDense_MPIAIJ(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 1415d71ae5a4SJacob Faibussowitsch { 14164e29119aSPierre Jolivet Mat B, C; 14174e29119aSPierre Jolivet 14184e29119aSPierre Jolivet PetscFunctionBegin; 14199566063dSJacob Faibussowitsch PetscCall(MatDenseGetLocalMatrix(A, &C)); 14209566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqDense_SeqAIJ(C, MATSEQAIJ, MAT_INITIAL_MATRIX, &B)); 14214e29119aSPierre Jolivet if (reuse == MAT_REUSE_MATRIX) { 14224e29119aSPierre Jolivet C = *newmat; 14234e29119aSPierre Jolivet } else C = NULL; 14249566063dSJacob Faibussowitsch PetscCall(MatCreateMPIMatConcatenateSeqMat(PetscObjectComm((PetscObject)A), B, A->cmap->n, !C ? MAT_INITIAL_MATRIX : MAT_REUSE_MATRIX, &C)); 14259566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 14264e29119aSPierre Jolivet if (reuse == MAT_INPLACE_MATRIX) { 14279566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &C)); 14284e29119aSPierre Jolivet } else if (reuse == MAT_INITIAL_MATRIX) *newmat = C; 14293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14304e29119aSPierre Jolivet } 14314e29119aSPierre Jolivet 143265b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 1433d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIDense_Elemental(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 1434d71ae5a4SJacob Faibussowitsch { 1435f709e8d7SPierre Jolivet Mat_MPIDense *a = (Mat_MPIDense *)A->data; 14368ea901baSHong Zhang Mat mat_elemental; 143732d7a744SHong Zhang PetscScalar *v; 1438f709e8d7SPierre Jolivet PetscInt m = A->rmap->n, N = A->cmap->N, rstart = A->rmap->rstart, i, *rows, *cols, lda; 14398ea901baSHong Zhang 14408baccfbdSHong Zhang PetscFunctionBegin; 1441378336b6SHong Zhang if (reuse == MAT_REUSE_MATRIX) { 1442378336b6SHong Zhang mat_elemental = *newmat; 14439566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(*newmat)); 1444378336b6SHong Zhang } else { 14459566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental)); 14469566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat_elemental, PETSC_DECIDE, PETSC_DECIDE, A->rmap->N, A->cmap->N)); 14479566063dSJacob Faibussowitsch PetscCall(MatSetType(mat_elemental, MATELEMENTAL)); 14489566063dSJacob Faibussowitsch PetscCall(MatSetUp(mat_elemental)); 14499566063dSJacob Faibussowitsch PetscCall(MatSetOption(mat_elemental, MAT_ROW_ORIENTED, PETSC_FALSE)); 1450378336b6SHong Zhang } 1451378336b6SHong Zhang 14529566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &rows, N, &cols)); 145332d7a744SHong Zhang for (i = 0; i < N; i++) cols[i] = i; 145432d7a744SHong Zhang for (i = 0; i < m; i++) rows[i] = rstart + i; 14558ea901baSHong Zhang 1456637a0070SStefano Zampini /* PETSc-Elemental interface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */ 14579566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(A, &v)); 1458f709e8d7SPierre Jolivet PetscCall(MatDenseGetLDA(a->A, &lda)); 1459f709e8d7SPierre Jolivet if (lda == m) PetscCall(MatSetValues(mat_elemental, m, rows, N, cols, v, ADD_VALUES)); 1460f709e8d7SPierre Jolivet else { 1461f709e8d7SPierre Jolivet for (i = 0; i < N; i++) PetscCall(MatSetValues(mat_elemental, m, rows, 1, &i, v + lda * i, ADD_VALUES)); 1462f709e8d7SPierre Jolivet } 14639566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY)); 14649566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY)); 14659566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(A, &v)); 14669566063dSJacob Faibussowitsch PetscCall(PetscFree2(rows, cols)); 14678ea901baSHong Zhang 1468511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 14699566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &mat_elemental)); 14708ea901baSHong Zhang } else { 14718ea901baSHong Zhang *newmat = mat_elemental; 14728ea901baSHong Zhang } 14733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14748baccfbdSHong Zhang } 147565b80a83SHong Zhang #endif 14768baccfbdSHong Zhang 1477d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseGetColumn_MPIDense(Mat A, PetscInt col, PetscScalar **vals) 1478d71ae5a4SJacob Faibussowitsch { 147986aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense *)A->data; 148086aefd0dSHong Zhang 148186aefd0dSHong Zhang PetscFunctionBegin; 14829566063dSJacob Faibussowitsch PetscCall(MatDenseGetColumn(mat->A, col, vals)); 14833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 148486aefd0dSHong Zhang } 148586aefd0dSHong Zhang 1486d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseRestoreColumn_MPIDense(Mat A, PetscScalar **vals) 1487d71ae5a4SJacob Faibussowitsch { 148886aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense *)A->data; 148986aefd0dSHong Zhang 149086aefd0dSHong Zhang PetscFunctionBegin; 14919566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreColumn(mat->A, vals)); 14923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 149386aefd0dSHong Zhang } 149486aefd0dSHong Zhang 1495d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIDense(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) 1496d71ae5a4SJacob Faibussowitsch { 149794e2cb23SJakub Kruzik Mat_MPIDense *mat; 149894e2cb23SJakub Kruzik PetscInt m, nloc, N; 149994e2cb23SJakub Kruzik 150094e2cb23SJakub Kruzik PetscFunctionBegin; 15019566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat, &m, &N)); 15029566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(inmat, NULL, &nloc)); 150394e2cb23SJakub Kruzik if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 150494e2cb23SJakub Kruzik PetscInt sum; 150594e2cb23SJakub Kruzik 150648a46eb9SPierre Jolivet if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnership(comm, &n, &N)); 150794e2cb23SJakub Kruzik /* Check sum(n) = N */ 15081c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&n, &sum, 1, MPIU_INT, MPI_SUM, comm)); 150908401ef6SPierre Jolivet PetscCheck(sum == N, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local columns %" PetscInt_FMT " != global columns %" PetscInt_FMT, sum, N); 151094e2cb23SJakub Kruzik 15119566063dSJacob Faibussowitsch PetscCall(MatCreateDense(comm, m, n, PETSC_DETERMINE, N, NULL, outmat)); 15129566063dSJacob Faibussowitsch PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 151394e2cb23SJakub Kruzik } 151494e2cb23SJakub Kruzik 151594e2cb23SJakub Kruzik /* numeric phase */ 151694e2cb23SJakub Kruzik mat = (Mat_MPIDense *)(*outmat)->data; 15179566063dSJacob Faibussowitsch PetscCall(MatCopy(inmat, mat->A, SAME_NONZERO_PATTERN)); 15183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 151994e2cb23SJakub Kruzik } 152094e2cb23SJakub Kruzik 1521d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetColumnVec_MPIDense(Mat A, PetscInt col, Vec *v) 1522d71ae5a4SJacob Faibussowitsch { 15236947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 15246947451fSStefano Zampini PetscInt lda; 15256947451fSStefano Zampini 15266947451fSStefano Zampini PetscFunctionBegin; 152728b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 152828b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 1529d16ceb75SStefano Zampini if (!a->cvec) PetscCall(MatDenseCreateColumnVec_Private(A, &a->cvec)); 15306947451fSStefano Zampini a->vecinuse = col + 1; 15319566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &lda)); 15329566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(a->A, (PetscScalar **)&a->ptrinuse)); 15338e3a54c0SPierre Jolivet PetscCall(VecPlaceArray(a->cvec, PetscSafePointerPlusOffset(a->ptrinuse, (size_t)col * (size_t)lda))); 15346947451fSStefano Zampini *v = a->cvec; 15353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15366947451fSStefano Zampini } 15376947451fSStefano Zampini 1538d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreColumnVec_MPIDense(Mat A, PetscInt col, Vec *v) 1539d71ae5a4SJacob Faibussowitsch { 15406947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 15416947451fSStefano Zampini 15426947451fSStefano Zampini PetscFunctionBegin; 154328b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseGetColumnVec() first"); 154428b400f6SJacob Faibussowitsch PetscCheck(a->cvec, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Missing internal column vector"); 1545*4186a4bbSPierre Jolivet VecCheckAssembled(a->cvec); 15466947451fSStefano Zampini a->vecinuse = 0; 15479566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(a->A, (PetscScalar **)&a->ptrinuse)); 15489566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 1549742765d3SMatthew Knepley if (v) *v = NULL; 15503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15516947451fSStefano Zampini } 15526947451fSStefano Zampini 1553d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetColumnVecRead_MPIDense(Mat A, PetscInt col, Vec *v) 1554d71ae5a4SJacob Faibussowitsch { 15556947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 15566947451fSStefano Zampini PetscInt lda; 15576947451fSStefano Zampini 15586947451fSStefano Zampini PetscFunctionBegin; 155928b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 156028b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 1561d16ceb75SStefano Zampini if (!a->cvec) PetscCall(MatDenseCreateColumnVec_Private(A, &a->cvec)); 15626947451fSStefano Zampini a->vecinuse = col + 1; 15639566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &lda)); 15649566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A, &a->ptrinuse)); 15658e3a54c0SPierre Jolivet PetscCall(VecPlaceArray(a->cvec, PetscSafePointerPlusOffset(a->ptrinuse, (size_t)col * (size_t)lda))); 15669566063dSJacob Faibussowitsch PetscCall(VecLockReadPush(a->cvec)); 15676947451fSStefano Zampini *v = a->cvec; 15683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15696947451fSStefano Zampini } 15706947451fSStefano Zampini 1571d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreColumnVecRead_MPIDense(Mat A, PetscInt col, Vec *v) 1572d71ae5a4SJacob Faibussowitsch { 15736947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 15746947451fSStefano Zampini 15756947451fSStefano Zampini PetscFunctionBegin; 15765f80ce2aSJacob Faibussowitsch PetscCheck(a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseGetColumnVec() first"); 15775f80ce2aSJacob Faibussowitsch PetscCheck(a->cvec, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing internal column vector"); 1578*4186a4bbSPierre Jolivet VecCheckAssembled(a->cvec); 15796947451fSStefano Zampini a->vecinuse = 0; 15809566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A, &a->ptrinuse)); 15819566063dSJacob Faibussowitsch PetscCall(VecLockReadPop(a->cvec)); 15829566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 1583742765d3SMatthew Knepley if (v) *v = NULL; 15843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15856947451fSStefano Zampini } 15866947451fSStefano Zampini 1587d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetColumnVecWrite_MPIDense(Mat A, PetscInt col, Vec *v) 1588d71ae5a4SJacob Faibussowitsch { 15896947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 15906947451fSStefano Zampini PetscInt lda; 15916947451fSStefano Zampini 15926947451fSStefano Zampini PetscFunctionBegin; 15935f80ce2aSJacob Faibussowitsch PetscCheck(!a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 15945f80ce2aSJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 1595d16ceb75SStefano Zampini if (!a->cvec) PetscCall(MatDenseCreateColumnVec_Private(A, &a->cvec)); 15966947451fSStefano Zampini a->vecinuse = col + 1; 15979566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &lda)); 15989566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(a->A, (PetscScalar **)&a->ptrinuse)); 15998e3a54c0SPierre Jolivet PetscCall(VecPlaceArray(a->cvec, PetscSafePointerPlusOffset(a->ptrinuse, (size_t)col * (size_t)lda))); 16006947451fSStefano Zampini *v = a->cvec; 16013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16026947451fSStefano Zampini } 16036947451fSStefano Zampini 1604d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDense(Mat A, PetscInt col, Vec *v) 1605d71ae5a4SJacob Faibussowitsch { 16066947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 16076947451fSStefano Zampini 16086947451fSStefano Zampini PetscFunctionBegin; 16095f80ce2aSJacob Faibussowitsch PetscCheck(a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseGetColumnVec() first"); 16105f80ce2aSJacob Faibussowitsch PetscCheck(a->cvec, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing internal column vector"); 1611*4186a4bbSPierre Jolivet VecCheckAssembled(a->cvec); 16126947451fSStefano Zampini a->vecinuse = 0; 16139566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(a->A, (PetscScalar **)&a->ptrinuse)); 16149566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 1615742765d3SMatthew Knepley if (v) *v = NULL; 16163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16176947451fSStefano Zampini } 16186947451fSStefano Zampini 161966976f2fSJacob Faibussowitsch static PetscErrorCode MatDenseGetSubMatrix_MPIDense(Mat A, PetscInt rbegin, PetscInt rend, PetscInt cbegin, PetscInt cend, Mat *v) 1620d71ae5a4SJacob Faibussowitsch { 16215ea7661aSPierre Jolivet Mat_MPIDense *a = (Mat_MPIDense *)A->data; 1622616b8fbbSStefano Zampini Mat_MPIDense *c; 1623616b8fbbSStefano Zampini MPI_Comm comm; 1624a2748737SPierre Jolivet PetscInt pbegin, pend; 16255ea7661aSPierre Jolivet 16265ea7661aSPierre Jolivet PetscFunctionBegin; 16279566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 16285f80ce2aSJacob Faibussowitsch PetscCheck(!a->vecinuse, comm, PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 16295f80ce2aSJacob Faibussowitsch PetscCheck(!a->matinuse, comm, PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 1630a2748737SPierre Jolivet pbegin = PetscMax(0, PetscMin(A->rmap->rend, rbegin) - A->rmap->rstart); 1631a2748737SPierre Jolivet pend = PetscMin(A->rmap->n, PetscMax(0, rend - A->rmap->rstart)); 16325ea7661aSPierre Jolivet if (!a->cmat) { 16339566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &a->cmat)); 16349566063dSJacob Faibussowitsch PetscCall(MatSetType(a->cmat, ((PetscObject)A)->type_name)); 1635a2748737SPierre Jolivet if (rend - rbegin == A->rmap->N) PetscCall(PetscLayoutReference(A->rmap, &a->cmat->rmap)); 1636a2748737SPierre Jolivet else { 1637a2748737SPierre Jolivet PetscCall(PetscLayoutSetLocalSize(a->cmat->rmap, pend - pbegin)); 1638a2748737SPierre Jolivet PetscCall(PetscLayoutSetSize(a->cmat->rmap, rend - rbegin)); 1639a2748737SPierre Jolivet PetscCall(PetscLayoutSetUp(a->cmat->rmap)); 1640a2748737SPierre Jolivet } 16419566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(a->cmat->cmap, cend - cbegin)); 16429566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(a->cmat->cmap)); 1643a2748737SPierre Jolivet } else { 1644a2748737SPierre Jolivet PetscBool same = (PetscBool)(rend - rbegin == a->cmat->rmap->N); 1645a2748737SPierre Jolivet if (same && a->cmat->rmap->N != A->rmap->N) { 1646a2748737SPierre Jolivet same = (PetscBool)(pend - pbegin == a->cmat->rmap->n); 1647a2748737SPierre Jolivet PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &same, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 1648a2748737SPierre Jolivet } 1649a2748737SPierre Jolivet if (!same) { 1650a2748737SPierre Jolivet PetscCall(PetscLayoutDestroy(&a->cmat->rmap)); 1651a2748737SPierre Jolivet PetscCall(PetscLayoutCreate(comm, &a->cmat->rmap)); 1652a2748737SPierre Jolivet PetscCall(PetscLayoutSetLocalSize(a->cmat->rmap, pend - pbegin)); 1653a2748737SPierre Jolivet PetscCall(PetscLayoutSetSize(a->cmat->rmap, rend - rbegin)); 1654a2748737SPierre Jolivet PetscCall(PetscLayoutSetUp(a->cmat->rmap)); 1655a2748737SPierre Jolivet } 1656a2748737SPierre Jolivet if (cend - cbegin != a->cmat->cmap->N) { 16579566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&a->cmat->cmap)); 16589566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &a->cmat->cmap)); 16599566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(a->cmat->cmap, cend - cbegin)); 16609566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(a->cmat->cmap)); 16615ea7661aSPierre Jolivet } 1662a2748737SPierre Jolivet } 1663616b8fbbSStefano Zampini c = (Mat_MPIDense *)a->cmat->data; 16645f80ce2aSJacob Faibussowitsch PetscCheck(!c->A, comm, PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 1665a2748737SPierre Jolivet PetscCall(MatDenseGetSubMatrix(a->A, pbegin, pend, cbegin, cend, &c->A)); 16663faff063SStefano Zampini 1667616b8fbbSStefano Zampini a->cmat->preallocated = PETSC_TRUE; 1668616b8fbbSStefano Zampini a->cmat->assembled = PETSC_TRUE; 16693faff063SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 16703faff063SStefano Zampini a->cmat->offloadmask = c->A->offloadmask; 16713faff063SStefano Zampini #endif 16725ea7661aSPierre Jolivet a->matinuse = cbegin + 1; 16735ea7661aSPierre Jolivet *v = a->cmat; 16743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16755ea7661aSPierre Jolivet } 16765ea7661aSPierre Jolivet 167766976f2fSJacob Faibussowitsch static PetscErrorCode MatDenseRestoreSubMatrix_MPIDense(Mat A, Mat *v) 1678d71ae5a4SJacob Faibussowitsch { 16795ea7661aSPierre Jolivet Mat_MPIDense *a = (Mat_MPIDense *)A->data; 1680616b8fbbSStefano Zampini Mat_MPIDense *c; 16815ea7661aSPierre Jolivet 16825ea7661aSPierre Jolivet PetscFunctionBegin; 16835f80ce2aSJacob Faibussowitsch PetscCheck(a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseGetSubMatrix() first"); 16845f80ce2aSJacob Faibussowitsch PetscCheck(a->cmat, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing internal matrix"); 16855f80ce2aSJacob Faibussowitsch PetscCheck(*v == a->cmat, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Not the matrix obtained from MatDenseGetSubMatrix()"); 16865ea7661aSPierre Jolivet a->matinuse = 0; 1687616b8fbbSStefano Zampini c = (Mat_MPIDense *)a->cmat->data; 16889566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreSubMatrix(a->A, &c->A)); 1689742765d3SMatthew Knepley if (v) *v = NULL; 16903faff063SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 16913faff063SStefano Zampini A->offloadmask = a->A->offloadmask; 16923faff063SStefano Zampini #endif 16933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16945ea7661aSPierre Jolivet } 16955ea7661aSPierre Jolivet 1696002bc6daSRichard Tran Mills /*MC 1697002bc6daSRichard Tran Mills MATMPIDENSE - MATMPIDENSE = "mpidense" - A matrix type to be used for distributed dense matrices. 1698002bc6daSRichard Tran Mills 16992ef1f0ffSBarry Smith Options Database Key: 170011a5261eSBarry Smith . -mat_type mpidense - sets the matrix type to `MATMPIDENSE` during a call to `MatSetFromOptions()` 1701002bc6daSRichard Tran Mills 1702002bc6daSRichard Tran Mills Level: beginner 1703002bc6daSRichard Tran Mills 17041cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateDense()`, `MATSEQDENSE`, `MATDENSE` 1705002bc6daSRichard Tran Mills M*/ 17064742e46bSJacob Faibussowitsch PetscErrorCode MatCreate_MPIDense(Mat mat) 1707d71ae5a4SJacob Faibussowitsch { 1708273d9f13SBarry Smith Mat_MPIDense *a; 1709273d9f13SBarry Smith 1710273d9f13SBarry Smith PetscFunctionBegin; 17114dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&a)); 1712b0a32e0cSBarry Smith mat->data = (void *)a; 1713aea10558SJacob Faibussowitsch mat->ops[0] = MatOps_Values; 1714273d9f13SBarry Smith 1715273d9f13SBarry Smith mat->insertmode = NOT_SET_VALUES; 1716273d9f13SBarry Smith 1717273d9f13SBarry Smith /* build cache for off array entries formed */ 1718273d9f13SBarry Smith a->donotstash = PETSC_FALSE; 17192205254eSKarl Rupp 17209566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)mat), 1, &mat->stash)); 1721273d9f13SBarry Smith 1722273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 1723f4259b30SLisandro Dalcin a->lvec = NULL; 1724f4259b30SLisandro Dalcin a->Mvctx = NULL; 1725273d9f13SBarry Smith a->roworiented = PETSC_TRUE; 1726273d9f13SBarry Smith 17279566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetLDA_C", MatDenseGetLDA_MPIDense)); 17289566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseSetLDA_C", MatDenseSetLDA_MPIDense)); 17299566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetArray_C", MatDenseGetArray_MPIDense)); 17309566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreArray_C", MatDenseRestoreArray_MPIDense)); 17319566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetArrayRead_C", MatDenseGetArrayRead_MPIDense)); 17329566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreArrayRead_C", MatDenseRestoreArrayRead_MPIDense)); 17339566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetArrayWrite_C", MatDenseGetArrayWrite_MPIDense)); 17349566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreArrayWrite_C", MatDenseRestoreArrayWrite_MPIDense)); 17359566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDensePlaceArray_C", MatDensePlaceArray_MPIDense)); 17369566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseResetArray_C", MatDenseResetArray_MPIDense)); 17379566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseReplaceArray_C", MatDenseReplaceArray_MPIDense)); 17389566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVec_C", MatDenseGetColumnVec_MPIDense)); 17399566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVec_C", MatDenseRestoreColumnVec_MPIDense)); 17409566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVecRead_C", MatDenseGetColumnVecRead_MPIDense)); 17419566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVecRead_C", MatDenseRestoreColumnVecRead_MPIDense)); 17429566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVecWrite_C", MatDenseGetColumnVecWrite_MPIDense)); 17439566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVecWrite_C", MatDenseRestoreColumnVecWrite_MPIDense)); 17449566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetSubMatrix_C", MatDenseGetSubMatrix_MPIDense)); 17459566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreSubMatrix_C", MatDenseRestoreSubMatrix_MPIDense)); 17469566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpidense_C", MatConvert_MPIAIJ_MPIDense)); 17479566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_mpiaij_C", MatConvert_MPIDense_MPIAIJ)); 17488baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 17499566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_elemental_C", MatConvert_MPIDense_Elemental)); 17508baccfbdSHong Zhang #endif 1751d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 17529566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_scalapack_C", MatConvert_Dense_ScaLAPACK)); 1753d24d4204SJose E. Roman #endif 1754637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 17559566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_mpidensecuda_C", MatConvert_MPIDense_MPIDenseCUDA)); 1756637a0070SStefano Zampini #endif 17579566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIDenseSetPreallocation_C", MatMPIDenseSetPreallocation_MPIDense)); 17589566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpidense_C", MatProductSetFromOptions_MPIAIJ_MPIDense)); 17599566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidense_mpiaij_C", MatProductSetFromOptions_MPIDense_MPIAIJ)); 17606718818eSStefano Zampini #if defined(PETSC_HAVE_CUDA) 17619566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaijcusparse_mpidense_C", MatProductSetFromOptions_MPIAIJ_MPIDense)); 17629566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidense_mpiaijcusparse_C", MatProductSetFromOptions_MPIDense_MPIAIJ)); 17636718818eSStefano Zampini #endif 176447d993e7Ssuyashtn #if defined(PETSC_HAVE_HIP) 176547d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_mpidensehip_C", MatConvert_MPIDense_MPIDenseHIP)); 176647d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaijhipsparse_mpidense_C", MatProductSetFromOptions_MPIAIJ_MPIDense)); 176747d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidense_mpiaijhipsparse_C", MatProductSetFromOptions_MPIDense_MPIAIJ)); 176847d993e7Ssuyashtn #endif 17699566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumn_C", MatDenseGetColumn_MPIDense)); 17709566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumn_C", MatDenseRestoreColumn_MPIDense)); 17710be0d8bdSHansol Suh PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMultAddColumnRange_C", MatMultAddColumnRange_MPIDense)); 17720be0d8bdSHansol Suh PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMultHermitianTransposeColumnRange_C", MatMultHermitianTransposeColumnRange_MPIDense)); 17730be0d8bdSHansol Suh PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMultHermitianTransposeAddColumnRange_C", MatMultHermitianTransposeAddColumnRange_MPIDense)); 17749566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)mat, MATMPIDENSE)); 17753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1776273d9f13SBarry Smith } 1777273d9f13SBarry Smith 1778209238afSKris Buschelman /*MC 1779002d173eSKris Buschelman MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices. 1780209238afSKris Buschelman 178111a5261eSBarry Smith This matrix type is identical to `MATSEQDENSE` when constructed with a single process communicator, 178211a5261eSBarry Smith and `MATMPIDENSE` otherwise. 1783209238afSKris Buschelman 17842ef1f0ffSBarry Smith Options Database Key: 178511a5261eSBarry Smith . -mat_type dense - sets the matrix type to `MATDENSE` during a call to `MatSetFromOptions()` 1786209238afSKris Buschelman 1787209238afSKris Buschelman Level: beginner 1788209238afSKris Buschelman 17891cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQDENSE`, `MATMPIDENSE`, `MATDENSECUDA`, `MATDENSEHIP` 17906947451fSStefano Zampini M*/ 17916947451fSStefano Zampini 1792273d9f13SBarry Smith /*@C 1793273d9f13SBarry Smith MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries 1794273d9f13SBarry Smith 17958f490ea3SStefano Zampini Collective 1796273d9f13SBarry Smith 1797273d9f13SBarry Smith Input Parameters: 1798fe59aa6dSJacob Faibussowitsch + B - the matrix 17992ef1f0ffSBarry Smith - data - optional location of matrix data. Set to `NULL` for PETSc 1800273d9f13SBarry Smith to control all matrix memory allocation. 1801273d9f13SBarry Smith 18022ef1f0ffSBarry Smith Level: intermediate 18032ef1f0ffSBarry Smith 1804273d9f13SBarry Smith Notes: 18052ef1f0ffSBarry Smith The dense format is fully compatible with standard Fortran 1806273d9f13SBarry Smith storage by columns. 1807273d9f13SBarry Smith 1808273d9f13SBarry Smith The data input variable is intended primarily for Fortran programmers 1809273d9f13SBarry Smith who wish to allocate their own matrix memory space. Most users should 18102ef1f0ffSBarry Smith set `data` to `NULL`. 1811273d9f13SBarry Smith 18121cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIDENSE`, `MatCreate()`, `MatCreateSeqDense()`, `MatSetValues()` 1813273d9f13SBarry Smith @*/ 1814d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIDenseSetPreallocation(Mat B, PetscScalar *data) 1815d71ae5a4SJacob Faibussowitsch { 1816273d9f13SBarry Smith PetscFunctionBegin; 1817d5ea218eSStefano Zampini PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 1818cac4c232SBarry Smith PetscTryMethod(B, "MatMPIDenseSetPreallocation_C", (Mat, PetscScalar *), (B, data)); 18193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1820273d9f13SBarry Smith } 1821273d9f13SBarry Smith 1822d3042a70SBarry Smith /*@ 182311a5261eSBarry Smith MatDensePlaceArray - Allows one to replace the array in a `MATDENSE` matrix with an 1824d3042a70SBarry Smith array provided by the user. This is useful to avoid copying an array 1825d3042a70SBarry Smith into a matrix 1826d3042a70SBarry Smith 1827d3042a70SBarry Smith Not Collective 1828d3042a70SBarry Smith 1829d3042a70SBarry Smith Input Parameters: 1830d3042a70SBarry Smith + mat - the matrix 1831d3042a70SBarry Smith - array - the array in column major order 1832d3042a70SBarry Smith 18332ef1f0ffSBarry Smith Level: developer 18342ef1f0ffSBarry Smith 183511a5261eSBarry Smith Note: 183611a5261eSBarry Smith You can return to the original array with a call to `MatDenseResetArray()`. The user is responsible for freeing this array; it will not be 1837d3042a70SBarry Smith freed when the matrix is destroyed. 1838d3042a70SBarry Smith 18391cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MatDenseGetArray()`, `MatDenseResetArray()`, `VecPlaceArray()`, `VecGetArray()`, `VecRestoreArray()`, `VecReplaceArray()`, `VecResetArray()`, 184011a5261eSBarry Smith `MatDenseReplaceArray()` 1841d3042a70SBarry Smith @*/ 1842d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDensePlaceArray(Mat mat, const PetscScalar *array) 1843d71ae5a4SJacob Faibussowitsch { 1844d3042a70SBarry Smith PetscFunctionBegin; 1845d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 1846cac4c232SBarry Smith PetscUseMethod(mat, "MatDensePlaceArray_C", (Mat, const PetscScalar *), (mat, array)); 18479566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 184847d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) 1849637a0070SStefano Zampini mat->offloadmask = PETSC_OFFLOAD_CPU; 1850637a0070SStefano Zampini #endif 18513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1852d3042a70SBarry Smith } 1853d3042a70SBarry Smith 1854d3042a70SBarry Smith /*@ 185511a5261eSBarry Smith MatDenseResetArray - Resets the matrix array to that it previously had before the call to `MatDensePlaceArray()` 1856d3042a70SBarry Smith 1857d3042a70SBarry Smith Not Collective 1858d3042a70SBarry Smith 18592fe279fdSBarry Smith Input Parameter: 1860d3042a70SBarry Smith . mat - the matrix 1861d3042a70SBarry Smith 18622ef1f0ffSBarry Smith Level: developer 18632ef1f0ffSBarry Smith 186411a5261eSBarry Smith Note: 186511a5261eSBarry Smith You can only call this after a call to `MatDensePlaceArray()` 1866d3042a70SBarry Smith 18671cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MatDenseGetArray()`, `MatDensePlaceArray()`, `VecPlaceArray()`, `VecGetArray()`, `VecRestoreArray()`, `VecReplaceArray()`, `VecResetArray()` 1868d3042a70SBarry Smith @*/ 1869d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseResetArray(Mat mat) 1870d71ae5a4SJacob Faibussowitsch { 1871d3042a70SBarry Smith PetscFunctionBegin; 1872d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 1873cac4c232SBarry Smith PetscUseMethod(mat, "MatDenseResetArray_C", (Mat), (mat)); 18749566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 18753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1876d3042a70SBarry Smith } 1877d3042a70SBarry Smith 1878d5ea218eSStefano Zampini /*@ 1879d5ea218eSStefano Zampini MatDenseReplaceArray - Allows one to replace the array in a dense matrix with an 1880d5ea218eSStefano Zampini array provided by the user. This is useful to avoid copying an array 1881d5ea218eSStefano Zampini into a matrix 1882d5ea218eSStefano Zampini 1883d5ea218eSStefano Zampini Not Collective 1884d5ea218eSStefano Zampini 1885d5ea218eSStefano Zampini Input Parameters: 1886d5ea218eSStefano Zampini + mat - the matrix 1887d5ea218eSStefano Zampini - array - the array in column major order 1888d5ea218eSStefano Zampini 18892ef1f0ffSBarry Smith Level: developer 18902ef1f0ffSBarry Smith 189111a5261eSBarry Smith Note: 189211a5261eSBarry Smith The memory passed in MUST be obtained with `PetscMalloc()` and CANNOT be 1893d5ea218eSStefano Zampini freed by the user. It will be freed when the matrix is destroyed. 1894d5ea218eSStefano Zampini 18951cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatDensePlaceArray()`, `MatDenseGetArray()`, `VecReplaceArray()` 1896d5ea218eSStefano Zampini @*/ 1897d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseReplaceArray(Mat mat, const PetscScalar *array) 1898d71ae5a4SJacob Faibussowitsch { 1899d5ea218eSStefano Zampini PetscFunctionBegin; 1900d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 1901cac4c232SBarry Smith PetscUseMethod(mat, "MatDenseReplaceArray_C", (Mat, const PetscScalar *), (mat, array)); 19029566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 190347d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) 1904d5ea218eSStefano Zampini mat->offloadmask = PETSC_OFFLOAD_CPU; 1905d5ea218eSStefano Zampini #endif 19063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1907d5ea218eSStefano Zampini } 1908d5ea218eSStefano Zampini 1909637a0070SStefano Zampini /*@C 191011a5261eSBarry Smith MatCreateDense - Creates a matrix in `MATDENSE` format. 19118965ea79SLois Curfman McInnes 1912d083f849SBarry Smith Collective 1913db81eaa0SLois Curfman McInnes 19148965ea79SLois Curfman McInnes Input Parameters: 1915db81eaa0SLois Curfman McInnes + comm - MPI communicator 19162ef1f0ffSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if `M` is given) 19172ef1f0ffSBarry Smith . n - number of local columns (or `PETSC_DECIDE` to have calculated if `N` is given) 19182ef1f0ffSBarry Smith . M - number of global rows (or `PETSC_DECIDE` to have calculated if `m` is given) 19192ef1f0ffSBarry Smith . N - number of global columns (or `PETSC_DECIDE` to have calculated if `n` is given) 19202ef1f0ffSBarry Smith - data - optional location of matrix data. Set data to `NULL` (`PETSC_NULL_SCALAR` for Fortran users) for PETSc 1921dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 19228965ea79SLois Curfman McInnes 19238965ea79SLois Curfman McInnes Output Parameter: 1924477f1c0bSLois Curfman McInnes . A - the matrix 19258965ea79SLois Curfman McInnes 19262ef1f0ffSBarry Smith Level: intermediate 19272ef1f0ffSBarry Smith 1928b259b22eSLois Curfman McInnes Notes: 19292ef1f0ffSBarry Smith The dense format is fully compatible with standard Fortran 193039ddd567SLois Curfman McInnes storage by columns. 193111a5261eSBarry Smith 193211a5261eSBarry Smith Although local portions of the matrix are stored in column-major 1933002bc6daSRichard Tran Mills order, the matrix is partitioned across MPI ranks by row. 19348965ea79SLois Curfman McInnes 193518f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 193618f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 19372ef1f0ffSBarry Smith set `data` to `NULL` (`PETSC_NULL_SCALAR` for Fortran users). 193818f449edSLois Curfman McInnes 19398965ea79SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 19408965ea79SLois Curfman McInnes (possibly both). 19418965ea79SLois Curfman McInnes 19421cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MatCreate()`, `MatCreateSeqDense()`, `MatSetValues()` 19438965ea79SLois Curfman McInnes @*/ 1944d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateDense(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscScalar *data, Mat *A) 1945d71ae5a4SJacob Faibussowitsch { 19463a40ed3dSBarry Smith PetscFunctionBegin; 19479566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 19489566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 19496f08ad05SPierre Jolivet PetscCall(MatSetType(*A, MATDENSE)); 19509566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(*A, data)); 19516f08ad05SPierre Jolivet PetscCall(MatMPIDenseSetPreallocation(*A, data)); 19523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 19538965ea79SLois Curfman McInnes } 19548965ea79SLois Curfman McInnes 1955d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDuplicate_MPIDense(Mat A, MatDuplicateOption cpvalues, Mat *newmat) 1956d71ae5a4SJacob Faibussowitsch { 19578965ea79SLois Curfman McInnes Mat mat; 19583501a2bdSLois Curfman McInnes Mat_MPIDense *a, *oldmat = (Mat_MPIDense *)A->data; 19598965ea79SLois Curfman McInnes 19603a40ed3dSBarry Smith PetscFunctionBegin; 1961f4259b30SLisandro Dalcin *newmat = NULL; 19629566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &mat)); 19639566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N)); 19649566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)A)->type_name)); 1965834f8fabSBarry Smith a = (Mat_MPIDense *)mat->data; 19665aa7edbeSHong Zhang 1967d5f3da31SBarry Smith mat->factortype = A->factortype; 1968c456f294SBarry Smith mat->assembled = PETSC_TRUE; 1969273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 19708965ea79SLois Curfman McInnes 1971e0fa3b82SLois Curfman McInnes mat->insertmode = NOT_SET_VALUES; 19723782ba37SSatish Balay a->donotstash = oldmat->donotstash; 1973e04c1aa4SHong Zhang 19749566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->rmap, &mat->rmap)); 19759566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->cmap, &mat->cmap)); 19768965ea79SLois Curfman McInnes 19779566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 197801b82886SBarry Smith 19798965ea79SLois Curfman McInnes *newmat = mat; 19803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 19818965ea79SLois Curfman McInnes } 19828965ea79SLois Curfman McInnes 198366976f2fSJacob Faibussowitsch static PetscErrorCode MatLoad_MPIDense(Mat newMat, PetscViewer viewer) 1984d71ae5a4SJacob Faibussowitsch { 198587d5ce66SSatish Balay PetscBool isbinary; 198687d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 198787d5ce66SSatish Balay PetscBool ishdf5; 198887d5ce66SSatish Balay #endif 1989eb91f321SVaclav Hapla 1990eb91f321SVaclav Hapla PetscFunctionBegin; 1991eb91f321SVaclav Hapla PetscValidHeaderSpecific(newMat, MAT_CLASSID, 1); 1992eb91f321SVaclav Hapla PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 1993eb91f321SVaclav Hapla /* force binary viewer to load .info file if it has not yet done so */ 19949566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 19959566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 199687d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 19979566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 199887d5ce66SSatish Balay #endif 1999eb91f321SVaclav Hapla if (isbinary) { 20009566063dSJacob Faibussowitsch PetscCall(MatLoad_Dense_Binary(newMat, viewer)); 2001eb91f321SVaclav Hapla #if defined(PETSC_HAVE_HDF5) 200287d5ce66SSatish Balay } else if (ishdf5) { 20039566063dSJacob Faibussowitsch PetscCall(MatLoad_Dense_HDF5(newMat, viewer)); 2004eb91f321SVaclav Hapla #endif 200598921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)newMat)->type_name); 20063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2007eb91f321SVaclav Hapla } 2008eb91f321SVaclav Hapla 2009d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatEqual_MPIDense(Mat A, Mat B, PetscBool *flag) 2010d71ae5a4SJacob Faibussowitsch { 20116e4ee0c6SHong Zhang Mat_MPIDense *matB = (Mat_MPIDense *)B->data, *matA = (Mat_MPIDense *)A->data; 20126e4ee0c6SHong Zhang Mat a, b; 201390ace30eSBarry Smith 20146e4ee0c6SHong Zhang PetscFunctionBegin; 20156e4ee0c6SHong Zhang a = matA->A; 20166e4ee0c6SHong Zhang b = matB->A; 20172cf15c64SPierre Jolivet PetscCall(MatEqual(a, b, flag)); 20182cf15c64SPierre Jolivet PetscCall(MPIU_Allreduce(MPI_IN_PLACE, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 20193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 20206e4ee0c6SHong Zhang } 202190ace30eSBarry Smith 202266976f2fSJacob Faibussowitsch static PetscErrorCode MatDestroy_MatTransMatMult_MPIDense_MPIDense(void *data) 2023d71ae5a4SJacob Faibussowitsch { 20246718818eSStefano Zampini Mat_TransMatMultDense *atb = (Mat_TransMatMultDense *)data; 2025baa3c1c6SHong Zhang 2026baa3c1c6SHong Zhang PetscFunctionBegin; 20279566063dSJacob Faibussowitsch PetscCall(PetscFree2(atb->sendbuf, atb->recvcounts)); 20289566063dSJacob Faibussowitsch PetscCall(MatDestroy(&atb->atb)); 20299566063dSJacob Faibussowitsch PetscCall(PetscFree(atb)); 20303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2031baa3c1c6SHong Zhang } 2032baa3c1c6SHong Zhang 203366976f2fSJacob Faibussowitsch static PetscErrorCode MatDestroy_MatMatTransMult_MPIDense_MPIDense(void *data) 2034d71ae5a4SJacob Faibussowitsch { 20356718818eSStefano Zampini Mat_MatTransMultDense *abt = (Mat_MatTransMultDense *)data; 2036cc48ffa7SToby Isaac 2037cc48ffa7SToby Isaac PetscFunctionBegin; 20389566063dSJacob Faibussowitsch PetscCall(PetscFree2(abt->buf[0], abt->buf[1])); 20399566063dSJacob Faibussowitsch PetscCall(PetscFree2(abt->recvcounts, abt->recvdispls)); 20409566063dSJacob Faibussowitsch PetscCall(PetscFree(abt)); 20413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2042cc48ffa7SToby Isaac } 2043cc48ffa7SToby Isaac 2044d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat A, Mat B, Mat C) 2045d71ae5a4SJacob Faibussowitsch { 2046baa3c1c6SHong Zhang Mat_MPIDense *a = (Mat_MPIDense *)A->data, *b = (Mat_MPIDense *)B->data, *c = (Mat_MPIDense *)C->data; 20476718818eSStefano Zampini Mat_TransMatMultDense *atb; 2048cb20be35SHong Zhang MPI_Comm comm; 20496718818eSStefano Zampini PetscMPIInt size, *recvcounts; 20506718818eSStefano Zampini PetscScalar *carray, *sendbuf; 2051637a0070SStefano Zampini const PetscScalar *atbarray; 2052a1f9a5e6SStefano Zampini PetscInt i, cN = C->cmap->N, proc, k, j, lda; 2053e68c0b26SHong Zhang const PetscInt *ranges; 2054cb20be35SHong Zhang 2055cb20be35SHong Zhang PetscFunctionBegin; 20566718818eSStefano Zampini MatCheckProduct(C, 3); 20575f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 20586718818eSStefano Zampini atb = (Mat_TransMatMultDense *)C->product->data; 20596718818eSStefano Zampini recvcounts = atb->recvcounts; 20606718818eSStefano Zampini sendbuf = atb->sendbuf; 20616718818eSStefano Zampini 20629566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 20639566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 2064e68c0b26SHong Zhang 2065c5ef1628SHong Zhang /* compute atbarray = aseq^T * bseq */ 20669566063dSJacob Faibussowitsch PetscCall(MatTransposeMatMult(a->A, b->A, atb->atb ? MAT_REUSE_MATRIX : MAT_INITIAL_MATRIX, PETSC_DEFAULT, &atb->atb)); 2067cb20be35SHong Zhang 20689566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRanges(C, &ranges)); 2069cb20be35SHong Zhang 2070660d5466SHong Zhang /* arrange atbarray into sendbuf */ 20719566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(atb->atb, &atbarray)); 20729566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(atb->atb, &lda)); 2073637a0070SStefano Zampini for (proc = 0, k = 0; proc < size; proc++) { 2074baa3c1c6SHong Zhang for (j = 0; j < cN; j++) { 2075a1f9a5e6SStefano Zampini for (i = ranges[proc]; i < ranges[proc + 1]; i++) sendbuf[k++] = atbarray[i + j * lda]; 2076cb20be35SHong Zhang } 2077cb20be35SHong Zhang } 20789566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(atb->atb, &atbarray)); 2079637a0070SStefano Zampini 2080c5ef1628SHong Zhang /* sum all atbarray to local values of C */ 20819566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(c->A, &carray)); 20829566063dSJacob Faibussowitsch PetscCallMPI(MPI_Reduce_scatter(sendbuf, carray, recvcounts, MPIU_SCALAR, MPIU_SUM, comm)); 20839566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(c->A, &carray)); 208467af85e8SPierre Jolivet PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 20859566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 20869566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 20873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2088cb20be35SHong Zhang } 2089cb20be35SHong Zhang 2090d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat A, Mat B, PetscReal fill, Mat C) 2091d71ae5a4SJacob Faibussowitsch { 2092cb20be35SHong Zhang MPI_Comm comm; 2093baa3c1c6SHong Zhang PetscMPIInt size; 2094660d5466SHong Zhang PetscInt cm = A->cmap->n, cM, cN = B->cmap->N; 2095baa3c1c6SHong Zhang Mat_TransMatMultDense *atb; 209647d993e7Ssuyashtn PetscBool cisdense = PETSC_FALSE; 20970acaeb71SStefano Zampini PetscInt i; 20980acaeb71SStefano Zampini const PetscInt *ranges; 2099cb20be35SHong Zhang 2100cb20be35SHong Zhang PetscFunctionBegin; 21018f83a4d9SJacob Faibussowitsch MatCheckProduct(C, 4); 21025f80ce2aSJacob Faibussowitsch PetscCheck(!C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty"); 21039566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 2104cb20be35SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) { 210598921bdaSJacob Faibussowitsch SETERRQ(comm, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != B (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->rstart, A->rmap->rend, B->rmap->rstart, B->rmap->rend); 2106cb20be35SHong Zhang } 2107cb20be35SHong Zhang 21084222ddf1SHong Zhang /* create matrix product C */ 21099566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, cm, B->cmap->n, A->cmap->N, B->cmap->N)); 211047d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) 21119566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATMPIDENSE, MATMPIDENSECUDA, "")); 211247d993e7Ssuyashtn #endif 211347d993e7Ssuyashtn #if defined(PETSC_HAVE_HIP) 211447d993e7Ssuyashtn PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATMPIDENSE, MATMPIDENSEHIP, "")); 211547d993e7Ssuyashtn #endif 211648a46eb9SPierre Jolivet if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)A)->type_name)); 21179566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 2118baa3c1c6SHong Zhang 21194222ddf1SHong Zhang /* create data structure for reuse C */ 21209566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 21219566063dSJacob Faibussowitsch PetscCall(PetscNew(&atb)); 21224222ddf1SHong Zhang cM = C->rmap->N; 21239566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(cM * cN, &atb->sendbuf, size, &atb->recvcounts)); 21249566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRanges(C, &ranges)); 21250acaeb71SStefano Zampini for (i = 0; i < size; i++) atb->recvcounts[i] = (ranges[i + 1] - ranges[i]) * cN; 2126baa3c1c6SHong Zhang 21276718818eSStefano Zampini C->product->data = atb; 21286718818eSStefano Zampini C->product->destroy = MatDestroy_MatTransMatMult_MPIDense_MPIDense; 21293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2130cb20be35SHong Zhang } 2131cb20be35SHong Zhang 2132d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat A, Mat B, PetscReal fill, Mat C) 2133d71ae5a4SJacob Faibussowitsch { 2134cc48ffa7SToby Isaac MPI_Comm comm; 2135cc48ffa7SToby Isaac PetscMPIInt i, size; 2136cc48ffa7SToby Isaac PetscInt maxRows, bufsiz; 2137cc48ffa7SToby Isaac PetscMPIInt tag; 21384222ddf1SHong Zhang PetscInt alg; 2139cc48ffa7SToby Isaac Mat_MatTransMultDense *abt; 21404222ddf1SHong Zhang Mat_Product *product = C->product; 21414222ddf1SHong Zhang PetscBool flg; 2142cc48ffa7SToby Isaac 2143cc48ffa7SToby Isaac PetscFunctionBegin; 21446718818eSStefano Zampini MatCheckProduct(C, 4); 21455f80ce2aSJacob Faibussowitsch PetscCheck(!C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty"); 21464222ddf1SHong Zhang /* check local size of A and B */ 21475f80ce2aSJacob Faibussowitsch PetscCheck(A->cmap->n == B->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local column dimensions are incompatible, A (%" PetscInt_FMT ") != B (%" PetscInt_FMT ")", A->cmap->n, B->cmap->n); 2148cc48ffa7SToby Isaac 21499566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg, "allgatherv", &flg)); 2150637a0070SStefano Zampini alg = flg ? 0 : 1; 2151cc48ffa7SToby Isaac 21524222ddf1SHong Zhang /* setup matrix product C */ 21539566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, A->rmap->n, B->rmap->n, A->rmap->N, B->rmap->N)); 21549566063dSJacob Faibussowitsch PetscCall(MatSetType(C, MATMPIDENSE)); 21559566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 21569566063dSJacob Faibussowitsch PetscCall(PetscObjectGetNewTag((PetscObject)C, &tag)); 21574222ddf1SHong Zhang 21584222ddf1SHong Zhang /* create data structure for reuse C */ 21599566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C, &comm)); 21609566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 21619566063dSJacob Faibussowitsch PetscCall(PetscNew(&abt)); 2162cc48ffa7SToby Isaac abt->tag = tag; 2163faa55883SToby Isaac abt->alg = alg; 2164faa55883SToby Isaac switch (alg) { 21654222ddf1SHong Zhang case 1: /* alg: "cyclic" */ 2166cc48ffa7SToby Isaac for (maxRows = 0, i = 0; i < size; i++) maxRows = PetscMax(maxRows, (B->rmap->range[i + 1] - B->rmap->range[i])); 2167cc48ffa7SToby Isaac bufsiz = A->cmap->N * maxRows; 2168f4f49eeaSPierre Jolivet PetscCall(PetscMalloc2(bufsiz, &abt->buf[0], bufsiz, &abt->buf[1])); 2169faa55883SToby Isaac break; 21704222ddf1SHong Zhang default: /* alg: "allgatherv" */ 2171f4f49eeaSPierre Jolivet PetscCall(PetscMalloc2(B->rmap->n * B->cmap->N, &abt->buf[0], B->rmap->N * B->cmap->N, &abt->buf[1])); 2172f4f49eeaSPierre Jolivet PetscCall(PetscMalloc2(size, &abt->recvcounts, size + 1, &abt->recvdispls)); 2173faa55883SToby Isaac for (i = 0; i <= size; i++) abt->recvdispls[i] = B->rmap->range[i] * A->cmap->N; 2174faa55883SToby Isaac for (i = 0; i < size; i++) abt->recvcounts[i] = abt->recvdispls[i + 1] - abt->recvdispls[i]; 2175faa55883SToby Isaac break; 2176faa55883SToby Isaac } 2177cc48ffa7SToby Isaac 21786718818eSStefano Zampini C->product->data = abt; 21796718818eSStefano Zampini C->product->destroy = MatDestroy_MatMatTransMult_MPIDense_MPIDense; 21804222ddf1SHong Zhang C->ops->mattransposemultnumeric = MatMatTransposeMultNumeric_MPIDense_MPIDense; 21813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2182cc48ffa7SToby Isaac } 2183cc48ffa7SToby Isaac 2184d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(Mat A, Mat B, Mat C) 2185d71ae5a4SJacob Faibussowitsch { 2186cc48ffa7SToby Isaac Mat_MPIDense *a = (Mat_MPIDense *)A->data, *b = (Mat_MPIDense *)B->data, *c = (Mat_MPIDense *)C->data; 21876718818eSStefano Zampini Mat_MatTransMultDense *abt; 2188cc48ffa7SToby Isaac MPI_Comm comm; 2189cc48ffa7SToby Isaac PetscMPIInt rank, size, sendsiz, recvsiz, sendto, recvfrom, recvisfrom; 2190f4259b30SLisandro Dalcin PetscScalar *sendbuf, *recvbuf = NULL, *cv; 2191cc48ffa7SToby Isaac PetscInt i, cK = A->cmap->N, k, j, bn; 2192cc48ffa7SToby Isaac PetscScalar _DOne = 1.0, _DZero = 0.0; 2193637a0070SStefano Zampini const PetscScalar *av, *bv; 219423fff9afSBarry Smith PetscBLASInt cm, cn, ck, alda, blda = 0, clda; 2195cc48ffa7SToby Isaac MPI_Request reqs[2]; 2196cc48ffa7SToby Isaac const PetscInt *ranges; 2197cc48ffa7SToby Isaac 2198cc48ffa7SToby Isaac PetscFunctionBegin; 21996718818eSStefano Zampini MatCheckProduct(C, 3); 22005f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 22016718818eSStefano Zampini abt = (Mat_MatTransMultDense *)C->product->data; 22029566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C, &comm)); 22039566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 22049566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 22059566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A, &av)); 22069566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(b->A, &bv)); 22079566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(c->A, &cv)); 22089566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &i)); 22099566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i, &alda)); 22109566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(b->A, &i)); 22119566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i, &blda)); 22129566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(c->A, &i)); 22139566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i, &clda)); 22149566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRanges(B, &ranges)); 2215cc48ffa7SToby Isaac bn = B->rmap->n; 2216637a0070SStefano Zampini if (blda == bn) { 2217637a0070SStefano Zampini sendbuf = (PetscScalar *)bv; 2218cc48ffa7SToby Isaac } else { 2219cc48ffa7SToby Isaac sendbuf = abt->buf[0]; 2220cc48ffa7SToby Isaac for (k = 0, i = 0; i < cK; i++) { 2221ad540459SPierre Jolivet for (j = 0; j < bn; j++, k++) sendbuf[k] = bv[i * blda + j]; 2222cc48ffa7SToby Isaac } 2223cc48ffa7SToby Isaac } 2224cc48ffa7SToby Isaac if (size > 1) { 2225cc48ffa7SToby Isaac sendto = (rank + size - 1) % size; 2226cc48ffa7SToby Isaac recvfrom = (rank + size + 1) % size; 2227cc48ffa7SToby Isaac } else { 2228cc48ffa7SToby Isaac sendto = recvfrom = 0; 2229cc48ffa7SToby Isaac } 22309566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(cK, &ck)); 22319566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(c->A->rmap->n, &cm)); 2232cc48ffa7SToby Isaac recvisfrom = rank; 2233cc48ffa7SToby Isaac for (i = 0; i < size; i++) { 2234cc48ffa7SToby Isaac /* we have finished receiving in sending, bufs can be read/modified */ 2235cc48ffa7SToby Isaac PetscInt nextrecvisfrom = (recvisfrom + 1) % size; /* which process the next recvbuf will originate on */ 2236cc48ffa7SToby Isaac PetscInt nextbn = ranges[nextrecvisfrom + 1] - ranges[nextrecvisfrom]; 2237cc48ffa7SToby Isaac 2238cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2239cc48ffa7SToby Isaac /* start the cyclic sends from sendbuf, to recvbuf (which will switch to sendbuf) */ 2240cc48ffa7SToby Isaac sendsiz = cK * bn; 2241cc48ffa7SToby Isaac recvsiz = cK * nextbn; 2242cc48ffa7SToby Isaac recvbuf = (i & 1) ? abt->buf[0] : abt->buf[1]; 22439566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(sendbuf, sendsiz, MPIU_SCALAR, sendto, abt->tag, comm, &reqs[0])); 22449566063dSJacob Faibussowitsch PetscCallMPI(MPI_Irecv(recvbuf, recvsiz, MPIU_SCALAR, recvfrom, abt->tag, comm, &reqs[1])); 2245cc48ffa7SToby Isaac } 2246cc48ffa7SToby Isaac 2247cc48ffa7SToby Isaac /* local aseq * sendbuf^T */ 22489566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(ranges[recvisfrom + 1] - ranges[recvisfrom], &cn)); 2249792fecdfSBarry Smith if (cm && cn && ck) PetscCallBLAS("BLASgemm", BLASgemm_("N", "T", &cm, &cn, &ck, &_DOne, av, &alda, sendbuf, &cn, &_DZero, cv + clda * ranges[recvisfrom], &clda)); 2250cc48ffa7SToby Isaac 2251cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2252cc48ffa7SToby Isaac /* wait for the sends and receives to complete, swap sendbuf and recvbuf */ 22539566063dSJacob Faibussowitsch PetscCallMPI(MPI_Waitall(2, reqs, MPI_STATUSES_IGNORE)); 2254cc48ffa7SToby Isaac } 2255cc48ffa7SToby Isaac bn = nextbn; 2256cc48ffa7SToby Isaac recvisfrom = nextrecvisfrom; 2257cc48ffa7SToby Isaac sendbuf = recvbuf; 2258cc48ffa7SToby Isaac } 22599566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A, &av)); 22609566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(b->A, &bv)); 22619566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(c->A, &cv)); 226267af85e8SPierre Jolivet PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 22639566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 22649566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 22653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2266cc48ffa7SToby Isaac } 2267cc48ffa7SToby Isaac 2268d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(Mat A, Mat B, Mat C) 2269d71ae5a4SJacob Faibussowitsch { 2270faa55883SToby Isaac Mat_MPIDense *a = (Mat_MPIDense *)A->data, *b = (Mat_MPIDense *)B->data, *c = (Mat_MPIDense *)C->data; 22716718818eSStefano Zampini Mat_MatTransMultDense *abt; 2272faa55883SToby Isaac MPI_Comm comm; 2273637a0070SStefano Zampini PetscMPIInt size; 2274637a0070SStefano Zampini PetscScalar *cv, *sendbuf, *recvbuf; 2275637a0070SStefano Zampini const PetscScalar *av, *bv; 2276637a0070SStefano Zampini PetscInt blda, i, cK = A->cmap->N, k, j, bn; 2277faa55883SToby Isaac PetscScalar _DOne = 1.0, _DZero = 0.0; 2278637a0070SStefano Zampini PetscBLASInt cm, cn, ck, alda, clda; 2279faa55883SToby Isaac 2280faa55883SToby Isaac PetscFunctionBegin; 22816718818eSStefano Zampini MatCheckProduct(C, 3); 22825f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 22836718818eSStefano Zampini abt = (Mat_MatTransMultDense *)C->product->data; 22849566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 22859566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 22869566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A, &av)); 22879566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(b->A, &bv)); 22889566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(c->A, &cv)); 22899566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &i)); 22909566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i, &alda)); 22919566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(b->A, &blda)); 22929566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(c->A, &i)); 22939566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i, &clda)); 2294faa55883SToby Isaac /* copy transpose of B into buf[0] */ 2295faa55883SToby Isaac bn = B->rmap->n; 2296faa55883SToby Isaac sendbuf = abt->buf[0]; 2297faa55883SToby Isaac recvbuf = abt->buf[1]; 2298faa55883SToby Isaac for (k = 0, j = 0; j < bn; j++) { 2299ad540459SPierre Jolivet for (i = 0; i < cK; i++, k++) sendbuf[k] = bv[i * blda + j]; 2300faa55883SToby Isaac } 23019566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(b->A, &bv)); 23029566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgatherv(sendbuf, bn * cK, MPIU_SCALAR, recvbuf, abt->recvcounts, abt->recvdispls, MPIU_SCALAR, comm)); 23039566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(cK, &ck)); 23049566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(c->A->rmap->n, &cm)); 23059566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(c->A->cmap->n, &cn)); 2306792fecdfSBarry Smith if (cm && cn && ck) PetscCallBLAS("BLASgemm", BLASgemm_("N", "N", &cm, &cn, &ck, &_DOne, av, &alda, recvbuf, &ck, &_DZero, cv, &clda)); 23079566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A, &av)); 23089566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(b->A, &bv)); 23099566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(c->A, &cv)); 231067af85e8SPierre Jolivet PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 23119566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 23129566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 23133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2314faa55883SToby Isaac } 2315faa55883SToby Isaac 2316d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat A, Mat B, Mat C) 2317d71ae5a4SJacob Faibussowitsch { 23186718818eSStefano Zampini Mat_MatTransMultDense *abt; 2319faa55883SToby Isaac 2320faa55883SToby Isaac PetscFunctionBegin; 23216718818eSStefano Zampini MatCheckProduct(C, 3); 23225f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 23236718818eSStefano Zampini abt = (Mat_MatTransMultDense *)C->product->data; 2324faa55883SToby Isaac switch (abt->alg) { 2325d71ae5a4SJacob Faibussowitsch case 1: 2326d71ae5a4SJacob Faibussowitsch PetscCall(MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(A, B, C)); 2327d71ae5a4SJacob Faibussowitsch break; 2328d71ae5a4SJacob Faibussowitsch default: 2329d71ae5a4SJacob Faibussowitsch PetscCall(MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(A, B, C)); 2330d71ae5a4SJacob Faibussowitsch break; 2331faa55883SToby Isaac } 23323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2333faa55883SToby Isaac } 2334faa55883SToby Isaac 233566976f2fSJacob Faibussowitsch static PetscErrorCode MatDestroy_MatMatMult_MPIDense_MPIDense(void *data) 2336d71ae5a4SJacob Faibussowitsch { 23376718818eSStefano Zampini Mat_MatMultDense *ab = (Mat_MatMultDense *)data; 2338320f2790SHong Zhang 2339320f2790SHong Zhang PetscFunctionBegin; 23409566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ab->Ce)); 23419566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ab->Ae)); 23429566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ab->Be)); 23439566063dSJacob Faibussowitsch PetscCall(PetscFree(ab)); 23443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2345320f2790SHong Zhang } 2346320f2790SHong Zhang 23475d8c7819SPierre Jolivet static PetscErrorCode MatMatMultNumeric_MPIDense_MPIDense(Mat A, Mat B, Mat C) 2348d71ae5a4SJacob Faibussowitsch { 23496718818eSStefano Zampini Mat_MatMultDense *ab; 23505d8c7819SPierre Jolivet Mat_MPIDense *mdn = (Mat_MPIDense *)A->data; 2351320f2790SHong Zhang 2352320f2790SHong Zhang PetscFunctionBegin; 23536718818eSStefano Zampini MatCheckProduct(C, 3); 23545f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Missing product data"); 23556718818eSStefano Zampini ab = (Mat_MatMultDense *)C->product->data; 23565d8c7819SPierre Jolivet if (ab->Ae && ab->Ce) { 23575d8c7819SPierre Jolivet #if PetscDefined(HAVE_ELEMENTAL) 23589566063dSJacob Faibussowitsch PetscCall(MatConvert_MPIDense_Elemental(A, MATELEMENTAL, MAT_REUSE_MATRIX, &ab->Ae)); 23599566063dSJacob Faibussowitsch PetscCall(MatConvert_MPIDense_Elemental(B, MATELEMENTAL, MAT_REUSE_MATRIX, &ab->Be)); 23609566063dSJacob Faibussowitsch PetscCall(MatMatMultNumeric_Elemental(ab->Ae, ab->Be, ab->Ce)); 23619566063dSJacob Faibussowitsch PetscCall(MatConvert(ab->Ce, MATMPIDENSE, MAT_REUSE_MATRIX, &C)); 23625d8c7819SPierre Jolivet #else 23635d8c7819SPierre Jolivet SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "PETSC_HAVE_ELEMENTAL not defined"); 23645d8c7819SPierre Jolivet #endif 23655d8c7819SPierre Jolivet } else { 23665d8c7819SPierre Jolivet const PetscScalar *read; 23675d8c7819SPierre Jolivet PetscScalar *write; 23685d8c7819SPierre Jolivet PetscInt lda; 23695d8c7819SPierre Jolivet 23705d8c7819SPierre Jolivet PetscCall(MatDenseGetLDA(B, &lda)); 23715d8c7819SPierre Jolivet PetscCall(MatDenseGetArrayRead(B, &read)); 23725d8c7819SPierre Jolivet PetscCall(MatDenseGetArrayWrite(ab->Be, &write)); 23735d8c7819SPierre Jolivet if (!mdn->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); /* cannot be done during the symbolic phase because of possible calls to MatProductReplaceMats() */ 23745d8c7819SPierre Jolivet for (PetscInt i = 0; i < C->cmap->N; ++i) { 23755d8c7819SPierre Jolivet PetscCall(PetscSFBcastBegin(mdn->Mvctx, MPIU_SCALAR, read + i * lda, write + i * ab->Be->rmap->n, MPI_REPLACE)); 23765d8c7819SPierre Jolivet PetscCall(PetscSFBcastEnd(mdn->Mvctx, MPIU_SCALAR, read + i * lda, write + i * ab->Be->rmap->n, MPI_REPLACE)); 23775d8c7819SPierre Jolivet } 23785d8c7819SPierre Jolivet PetscCall(MatDenseRestoreArrayWrite(ab->Be, &write)); 23795d8c7819SPierre Jolivet PetscCall(MatDenseRestoreArrayRead(B, &read)); 2380f4f49eeaSPierre Jolivet PetscCall(MatMatMultNumeric_SeqDense_SeqDense(((Mat_MPIDense *)A->data)->A, ab->Be, ((Mat_MPIDense *)C->data)->A)); 23815d8c7819SPierre Jolivet } 23823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2383320f2790SHong Zhang } 2384320f2790SHong Zhang 2385d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIDense(Mat A, Mat B, PetscReal fill, Mat C) 2386d71ae5a4SJacob Faibussowitsch { 23875d8c7819SPierre Jolivet Mat_Product *product = C->product; 23885d8c7819SPierre Jolivet PetscInt alg; 2389320f2790SHong Zhang Mat_MatMultDense *ab; 23905d8c7819SPierre Jolivet PetscBool flg; 2391320f2790SHong Zhang 2392320f2790SHong Zhang PetscFunctionBegin; 23936718818eSStefano Zampini MatCheckProduct(C, 4); 23945f80ce2aSJacob Faibussowitsch PetscCheck(!C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty"); 23954222ddf1SHong Zhang /* check local size of A and B */ 23965d8c7819SPierre Jolivet PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != B (%" PetscInt_FMT ", %" PetscInt_FMT ")", 23975d8c7819SPierre Jolivet A->rmap->rstart, A->rmap->rend, B->rmap->rstart, B->rmap->rend); 2398320f2790SHong Zhang 23995d8c7819SPierre Jolivet PetscCall(PetscStrcmp(product->alg, "petsc", &flg)); 24005d8c7819SPierre Jolivet alg = flg ? 0 : 1; 24014222ddf1SHong Zhang 24024222ddf1SHong Zhang /* setup C */ 24035d8c7819SPierre Jolivet PetscCall(MatSetSizes(C, A->rmap->n, B->cmap->n, A->rmap->N, B->cmap->N)); 24045d8c7819SPierre Jolivet PetscCall(MatSetType(C, MATMPIDENSE)); 24059566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 2406320f2790SHong Zhang 2407320f2790SHong Zhang /* create data structure for reuse Cdense */ 24089566063dSJacob Faibussowitsch PetscCall(PetscNew(&ab)); 24095d8c7819SPierre Jolivet 24105d8c7819SPierre Jolivet switch (alg) { 24115d8c7819SPierre Jolivet case 1: /* alg: "elemental" */ 24125d8c7819SPierre Jolivet #if PetscDefined(HAVE_ELEMENTAL) 24135d8c7819SPierre Jolivet /* create elemental matrices Ae and Be */ 24145d8c7819SPierre Jolivet PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &ab->Ae)); 24155d8c7819SPierre Jolivet PetscCall(MatSetSizes(ab->Ae, PETSC_DECIDE, PETSC_DECIDE, A->rmap->N, A->cmap->N)); 24165d8c7819SPierre Jolivet PetscCall(MatSetType(ab->Ae, MATELEMENTAL)); 24175d8c7819SPierre Jolivet PetscCall(MatSetUp(ab->Ae)); 24185d8c7819SPierre Jolivet PetscCall(MatSetOption(ab->Ae, MAT_ROW_ORIENTED, PETSC_FALSE)); 24195d8c7819SPierre Jolivet 24205d8c7819SPierre Jolivet PetscCall(MatCreate(PetscObjectComm((PetscObject)B), &ab->Be)); 24215d8c7819SPierre Jolivet PetscCall(MatSetSizes(ab->Be, PETSC_DECIDE, PETSC_DECIDE, B->rmap->N, B->cmap->N)); 24225d8c7819SPierre Jolivet PetscCall(MatSetType(ab->Be, MATELEMENTAL)); 24235d8c7819SPierre Jolivet PetscCall(MatSetUp(ab->Be)); 24245d8c7819SPierre Jolivet PetscCall(MatSetOption(ab->Be, MAT_ROW_ORIENTED, PETSC_FALSE)); 24255d8c7819SPierre Jolivet 24265d8c7819SPierre Jolivet /* compute symbolic Ce = Ae*Be */ 24275d8c7819SPierre Jolivet PetscCall(MatCreate(PetscObjectComm((PetscObject)C), &ab->Ce)); 24285d8c7819SPierre Jolivet PetscCall(MatMatMultSymbolic_Elemental(ab->Ae, ab->Be, fill, ab->Ce)); 24295d8c7819SPierre Jolivet #else 24305d8c7819SPierre Jolivet SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "PETSC_HAVE_ELEMENTAL not defined"); 24315d8c7819SPierre Jolivet #endif 24325d8c7819SPierre Jolivet break; 24335d8c7819SPierre Jolivet default: /* alg: "petsc" */ 24345d8c7819SPierre Jolivet ab->Ae = NULL; 24355d8c7819SPierre Jolivet PetscCall(MatCreateSeqDense(PETSC_COMM_SELF, A->cmap->N, B->cmap->N, NULL, &ab->Be)); 24365d8c7819SPierre Jolivet ab->Ce = NULL; 24375d8c7819SPierre Jolivet break; 24385d8c7819SPierre Jolivet } 24396718818eSStefano Zampini 24406718818eSStefano Zampini C->product->data = ab; 24416718818eSStefano Zampini C->product->destroy = MatDestroy_MatMatMult_MPIDense_MPIDense; 24424222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIDense; 24433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2444320f2790SHong Zhang } 24452ef1f0ffSBarry Smith 2446d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_AB(Mat C) 2447d71ae5a4SJacob Faibussowitsch { 24485d8c7819SPierre Jolivet Mat_Product *product = C->product; 24495d8c7819SPierre Jolivet const char *algTypes[2] = {"petsc", "elemental"}; 24505d8c7819SPierre Jolivet PetscInt alg, nalg = PetscDefined(HAVE_ELEMENTAL) ? 2 : 1; 24515d8c7819SPierre Jolivet PetscBool flg = PETSC_FALSE; 24525d8c7819SPierre Jolivet 24534d86920dSPierre Jolivet PetscFunctionBegin; 24545d8c7819SPierre Jolivet /* Set default algorithm */ 24555d8c7819SPierre Jolivet alg = 0; /* default is petsc */ 24565d8c7819SPierre Jolivet PetscCall(PetscStrcmp(product->alg, "default", &flg)); 24575d8c7819SPierre Jolivet if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 24585d8c7819SPierre Jolivet 24595d8c7819SPierre Jolivet /* Get runtime option */ 24605d8c7819SPierre Jolivet PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AB", "Mat"); 24615d8c7819SPierre Jolivet PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatProduct_AB", algTypes, nalg, algTypes[alg], &alg, &flg)); 24625d8c7819SPierre Jolivet PetscOptionsEnd(); 24635d8c7819SPierre Jolivet if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 24645d8c7819SPierre Jolivet 24654222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIDense; 24664222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 24673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2468320f2790SHong Zhang } 246986aefd0dSHong Zhang 2470d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_AtB(Mat C) 2471d71ae5a4SJacob Faibussowitsch { 24724222ddf1SHong Zhang Mat_Product *product = C->product; 24734222ddf1SHong Zhang Mat A = product->A, B = product->B; 24744222ddf1SHong Zhang 24754222ddf1SHong Zhang PetscFunctionBegin; 247607e90273SPierre Jolivet PetscCheck(A->rmap->rstart == B->rmap->rstart && A->rmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 247707e90273SPierre Jolivet A->rmap->rstart, A->rmap->rend, B->rmap->rstart, B->rmap->rend); 24786718818eSStefano Zampini C->ops->transposematmultsymbolic = MatTransposeMatMultSymbolic_MPIDense_MPIDense; 24796718818eSStefano Zampini C->ops->productsymbolic = MatProductSymbolic_AtB; 24803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24814222ddf1SHong Zhang } 24824222ddf1SHong Zhang 2483d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_ABt(Mat C) 2484d71ae5a4SJacob Faibussowitsch { 24854222ddf1SHong Zhang Mat_Product *product = C->product; 24864222ddf1SHong Zhang const char *algTypes[2] = {"allgatherv", "cyclic"}; 24874222ddf1SHong Zhang PetscInt alg, nalg = 2; 24884222ddf1SHong Zhang PetscBool flg = PETSC_FALSE; 24894222ddf1SHong Zhang 24904222ddf1SHong Zhang PetscFunctionBegin; 24914222ddf1SHong Zhang /* Set default algorithm */ 24924222ddf1SHong Zhang alg = 0; /* default is allgatherv */ 24939566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg, "default", &flg)); 249448a46eb9SPierre Jolivet if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 24954222ddf1SHong Zhang 24964222ddf1SHong Zhang /* Get runtime option */ 24974222ddf1SHong Zhang if (product->api_user) { 2498d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatTransposeMult", "Mat"); 24999566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-matmattransmult_mpidense_mpidense_via", "Algorithmic approach", "MatMatTransposeMult", algTypes, nalg, algTypes[alg], &alg, &flg)); 2500d0609cedSBarry Smith PetscOptionsEnd(); 25014222ddf1SHong Zhang } else { 2502d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_ABt", "Mat"); 25039566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatProduct_ABt", algTypes, nalg, algTypes[alg], &alg, &flg)); 2504d0609cedSBarry Smith PetscOptionsEnd(); 25054222ddf1SHong Zhang } 250648a46eb9SPierre Jolivet if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 25074222ddf1SHong Zhang 25084222ddf1SHong Zhang C->ops->mattransposemultsymbolic = MatMatTransposeMultSymbolic_MPIDense_MPIDense; 25094222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_ABt; 25103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 25114222ddf1SHong Zhang } 25124222ddf1SHong Zhang 25135d8c7819SPierre Jolivet static PetscErrorCode MatProductSetFromOptions_MPIDense(Mat C) 2514d71ae5a4SJacob Faibussowitsch { 25154222ddf1SHong Zhang Mat_Product *product = C->product; 25164222ddf1SHong Zhang 25174222ddf1SHong Zhang PetscFunctionBegin; 25184222ddf1SHong Zhang switch (product->type) { 2519d71ae5a4SJacob Faibussowitsch case MATPRODUCT_AB: 2520d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIDense_AB(C)); 2521d71ae5a4SJacob Faibussowitsch break; 2522d71ae5a4SJacob Faibussowitsch case MATPRODUCT_AtB: 2523d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIDense_AtB(C)); 2524d71ae5a4SJacob Faibussowitsch break; 2525d71ae5a4SJacob Faibussowitsch case MATPRODUCT_ABt: 2526d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIDense_ABt(C)); 2527d71ae5a4SJacob Faibussowitsch break; 2528d71ae5a4SJacob Faibussowitsch default: 2529d71ae5a4SJacob Faibussowitsch break; 25304222ddf1SHong Zhang } 25313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 25324222ddf1SHong Zhang } 2533