1be1d678aSKris Buschelman 2ed3cc1f0SBarry Smith /* 3ed3cc1f0SBarry Smith Basic functions for basic parallel dense matrices. 4ed3cc1f0SBarry Smith */ 5ed3cc1f0SBarry Smith 604fea9ffSBarry Smith 7c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h> /*I "petscmat.h" I*/ 88949adfdSHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 9baa3c1c6SHong Zhang #include <petscblaslapack.h> 108965ea79SLois Curfman McInnes 11ab92ecdeSBarry Smith /*@ 12ab92ecdeSBarry Smith 13ab92ecdeSBarry Smith MatDenseGetLocalMatrix - For a MATMPIDENSE or MATSEQDENSE matrix returns the sequential 14ab92ecdeSBarry Smith matrix that represents the operator. For sequential matrices it returns itself. 15ab92ecdeSBarry Smith 16ab92ecdeSBarry Smith Input Parameter: 17ab92ecdeSBarry Smith . A - the Seq or MPI dense matrix 18ab92ecdeSBarry Smith 19ab92ecdeSBarry Smith Output Parameter: 20ab92ecdeSBarry Smith . B - the inner matrix 21ab92ecdeSBarry Smith 228e6c10adSSatish Balay Level: intermediate 238e6c10adSSatish Balay 24ab92ecdeSBarry Smith @*/ 25ab92ecdeSBarry Smith PetscErrorCode MatDenseGetLocalMatrix(Mat A,Mat *B) 26ab92ecdeSBarry Smith { 27ab92ecdeSBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 28ab92ecdeSBarry Smith PetscErrorCode ierr; 29ace3abfcSBarry Smith PetscBool flg; 30ab92ecdeSBarry Smith 31ab92ecdeSBarry Smith PetscFunctionBegin; 32251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIDENSE,&flg);CHKERRQ(ierr); 332205254eSKarl Rupp if (flg) *B = mat->A; 342205254eSKarl Rupp else *B = A; 35ab92ecdeSBarry Smith PetscFunctionReturn(0); 36ab92ecdeSBarry Smith } 37ab92ecdeSBarry Smith 38ba8c8a56SBarry Smith PetscErrorCode MatGetRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 39ba8c8a56SBarry Smith { 40ba8c8a56SBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 41ba8c8a56SBarry Smith PetscErrorCode ierr; 42d0f46423SBarry Smith PetscInt lrow,rstart = A->rmap->rstart,rend = A->rmap->rend; 43ba8c8a56SBarry Smith 44ba8c8a56SBarry Smith PetscFunctionBegin; 45e7e72b3dSBarry Smith if (row < rstart || row >= rend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows"); 46ba8c8a56SBarry Smith lrow = row - rstart; 47ba8c8a56SBarry Smith ierr = MatGetRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v);CHKERRQ(ierr); 48ba8c8a56SBarry Smith PetscFunctionReturn(0); 49ba8c8a56SBarry Smith } 50ba8c8a56SBarry Smith 51ba8c8a56SBarry Smith PetscErrorCode MatRestoreRow_MPIDense(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 52ba8c8a56SBarry Smith { 53ba8c8a56SBarry Smith PetscErrorCode ierr; 54ba8c8a56SBarry Smith 55ba8c8a56SBarry Smith PetscFunctionBegin; 56ba8c8a56SBarry Smith if (idx) {ierr = PetscFree(*idx);CHKERRQ(ierr);} 57ba8c8a56SBarry Smith if (v) {ierr = PetscFree(*v);CHKERRQ(ierr);} 58ba8c8a56SBarry Smith PetscFunctionReturn(0); 59ba8c8a56SBarry Smith } 60ba8c8a56SBarry Smith 6111bd1e4dSLisandro Dalcin PetscErrorCode MatGetDiagonalBlock_MPIDense(Mat A,Mat *a) 620de54da6SSatish Balay { 630de54da6SSatish Balay Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 646849ba73SBarry Smith PetscErrorCode ierr; 65d0f46423SBarry Smith PetscInt m = A->rmap->n,rstart = A->rmap->rstart; 6687828ca2SBarry Smith PetscScalar *array; 670de54da6SSatish Balay MPI_Comm comm; 6811bd1e4dSLisandro Dalcin Mat B; 690de54da6SSatish Balay 700de54da6SSatish Balay PetscFunctionBegin; 71e32f2f54SBarry Smith if (A->rmap->N != A->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only square matrices supported."); 720de54da6SSatish Balay 7311bd1e4dSLisandro Dalcin ierr = PetscObjectQuery((PetscObject)A,"DiagonalBlock",(PetscObject*)&B);CHKERRQ(ierr); 7411bd1e4dSLisandro Dalcin if (!B) { 750de54da6SSatish Balay ierr = PetscObjectGetComm((PetscObject)(mdn->A),&comm);CHKERRQ(ierr); 7611bd1e4dSLisandro Dalcin ierr = MatCreate(comm,&B);CHKERRQ(ierr); 7711bd1e4dSLisandro Dalcin ierr = MatSetSizes(B,m,m,m,m);CHKERRQ(ierr); 7811bd1e4dSLisandro Dalcin ierr = MatSetType(B,((PetscObject)mdn->A)->type_name);CHKERRQ(ierr); 798c778c55SBarry Smith ierr = MatDenseGetArray(mdn->A,&array);CHKERRQ(ierr); 8011bd1e4dSLisandro Dalcin ierr = MatSeqDenseSetPreallocation(B,array+m*rstart);CHKERRQ(ierr); 818c778c55SBarry Smith ierr = MatDenseRestoreArray(mdn->A,&array);CHKERRQ(ierr); 8211bd1e4dSLisandro Dalcin ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 8311bd1e4dSLisandro Dalcin ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 8411bd1e4dSLisandro Dalcin ierr = PetscObjectCompose((PetscObject)A,"DiagonalBlock",(PetscObject)B);CHKERRQ(ierr); 8511bd1e4dSLisandro Dalcin *a = B; 8611bd1e4dSLisandro Dalcin ierr = MatDestroy(&B);CHKERRQ(ierr); 872205254eSKarl Rupp } else *a = B; 880de54da6SSatish Balay PetscFunctionReturn(0); 890de54da6SSatish Balay } 900de54da6SSatish Balay 9113f74950SBarry Smith PetscErrorCode MatSetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],const PetscScalar v[],InsertMode addv) 928965ea79SLois Curfman McInnes { 9339b7565bSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)mat->data; 94dfbe8321SBarry Smith PetscErrorCode ierr; 95d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 96ace3abfcSBarry Smith PetscBool roworiented = A->roworiented; 978965ea79SLois Curfman McInnes 983a40ed3dSBarry Smith PetscFunctionBegin; 998965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 1005ef9f2a5SBarry Smith if (idxm[i] < 0) continue; 101e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 1028965ea79SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 1038965ea79SLois Curfman McInnes row = idxm[i] - rstart; 10439b7565bSBarry Smith if (roworiented) { 10539b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv);CHKERRQ(ierr); 1063a40ed3dSBarry Smith } else { 1078965ea79SLois Curfman McInnes for (j=0; j<n; j++) { 1085ef9f2a5SBarry Smith if (idxn[j] < 0) continue; 109e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 11039b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv);CHKERRQ(ierr); 11139b7565bSBarry Smith } 1128965ea79SLois Curfman McInnes } 1132205254eSKarl Rupp } else if (!A->donotstash) { 1145080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 11539b7565bSBarry Smith if (roworiented) { 116b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,idxm[i],n,idxn,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 117d36fbae8SSatish Balay } else { 118b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,idxm[i],n,idxn,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 11939b7565bSBarry Smith } 120b49de8d1SLois Curfman McInnes } 121b49de8d1SLois Curfman McInnes } 1223a40ed3dSBarry Smith PetscFunctionReturn(0); 123b49de8d1SLois Curfman McInnes } 124b49de8d1SLois Curfman McInnes 12513f74950SBarry Smith PetscErrorCode MatGetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 126b49de8d1SLois Curfman McInnes { 127b49de8d1SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 128dfbe8321SBarry Smith PetscErrorCode ierr; 129d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 130b49de8d1SLois Curfman McInnes 1313a40ed3dSBarry Smith PetscFunctionBegin; 132b49de8d1SLois Curfman McInnes for (i=0; i<m; i++) { 133e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); */ 134e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 135b49de8d1SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 136b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 137b49de8d1SLois Curfman McInnes for (j=0; j<n; j++) { 138e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); */ 139e7e72b3dSBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 140b49de8d1SLois Curfman McInnes ierr = MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j);CHKERRQ(ierr); 141b49de8d1SLois Curfman McInnes } 142e7e72b3dSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 1438965ea79SLois Curfman McInnes } 1443a40ed3dSBarry Smith PetscFunctionReturn(0); 1458965ea79SLois Curfman McInnes } 1468965ea79SLois Curfman McInnes 147*49a6ff4bSBarry Smith static PetscErrorCode MatDenseGetLDA_MPIDense(Mat A,PetscInt *lda) 148*49a6ff4bSBarry Smith { 149*49a6ff4bSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 150*49a6ff4bSBarry Smith PetscErrorCode ierr; 151*49a6ff4bSBarry Smith 152*49a6ff4bSBarry Smith PetscFunctionBegin; 153*49a6ff4bSBarry Smith ierr = MatDenseGetLDA(a->A,lda);CHKERRQ(ierr); 154*49a6ff4bSBarry Smith PetscFunctionReturn(0); 155*49a6ff4bSBarry Smith } 156*49a6ff4bSBarry Smith 157d3042a70SBarry Smith static PetscErrorCode MatDenseGetArray_MPIDense(Mat A,PetscScalar *array[]) 158ff14e315SSatish Balay { 159ff14e315SSatish Balay Mat_MPIDense *a = (Mat_MPIDense*)A->data; 160dfbe8321SBarry Smith PetscErrorCode ierr; 161ff14e315SSatish Balay 1623a40ed3dSBarry Smith PetscFunctionBegin; 1638c778c55SBarry Smith ierr = MatDenseGetArray(a->A,array);CHKERRQ(ierr); 1643a40ed3dSBarry Smith PetscFunctionReturn(0); 165ff14e315SSatish Balay } 166ff14e315SSatish Balay 1678572280aSBarry Smith static PetscErrorCode MatDenseGetArrayRead_MPIDense(Mat A,const PetscScalar *array[]) 1688572280aSBarry Smith { 1698572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1708572280aSBarry Smith PetscErrorCode ierr; 1718572280aSBarry Smith 1728572280aSBarry Smith PetscFunctionBegin; 1738572280aSBarry Smith ierr = MatDenseGetArrayRead(a->A,array);CHKERRQ(ierr); 1748572280aSBarry Smith PetscFunctionReturn(0); 1758572280aSBarry Smith } 1768572280aSBarry Smith 177d3042a70SBarry Smith static PetscErrorCode MatDensePlaceArray_MPIDense(Mat A,const PetscScalar array[]) 178d3042a70SBarry Smith { 179d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 180d3042a70SBarry Smith PetscErrorCode ierr; 181d3042a70SBarry Smith 182d3042a70SBarry Smith PetscFunctionBegin; 183d3042a70SBarry Smith ierr = MatDensePlaceArray(a->A,array);CHKERRQ(ierr); 184d3042a70SBarry Smith PetscFunctionReturn(0); 185d3042a70SBarry Smith } 186d3042a70SBarry Smith 187d3042a70SBarry Smith static PetscErrorCode MatDenseResetArray_MPIDense(Mat A) 188d3042a70SBarry Smith { 189d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 190d3042a70SBarry Smith PetscErrorCode ierr; 191d3042a70SBarry Smith 192d3042a70SBarry Smith PetscFunctionBegin; 193d3042a70SBarry Smith ierr = MatDenseResetArray(a->A);CHKERRQ(ierr); 194d3042a70SBarry Smith PetscFunctionReturn(0); 195d3042a70SBarry Smith } 196d3042a70SBarry Smith 1977dae84e0SHong Zhang static PetscErrorCode MatCreateSubMatrix_MPIDense(Mat A,IS isrow,IS iscol,MatReuse scall,Mat *B) 198ca3fa75bSLois Curfman McInnes { 199ca3fa75bSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data,*newmatd; 200ca3fa75bSLois Curfman McInnes Mat_SeqDense *lmat = (Mat_SeqDense*)mat->A->data; 2016849ba73SBarry Smith PetscErrorCode ierr; 2024aa3045dSJed Brown PetscInt i,j,rstart,rend,nrows,ncols,Ncols,nlrows,nlcols; 2035d0c19d7SBarry Smith const PetscInt *irow,*icol; 20487828ca2SBarry Smith PetscScalar *av,*bv,*v = lmat->v; 205ca3fa75bSLois Curfman McInnes Mat newmat; 2064aa3045dSJed Brown IS iscol_local; 20742a884f0SBarry Smith MPI_Comm comm_is,comm_mat; 208ca3fa75bSLois Curfman McInnes 209ca3fa75bSLois Curfman McInnes PetscFunctionBegin; 21042a884f0SBarry Smith ierr = PetscObjectGetComm((PetscObject)A,&comm_mat);CHKERRQ(ierr); 21142a884f0SBarry Smith ierr = PetscObjectGetComm((PetscObject)iscol,&comm_is);CHKERRQ(ierr); 21242a884f0SBarry Smith if (comm_mat != comm_is) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NOTSAMECOMM,"IS communicator must match matrix communicator"); 21342a884f0SBarry Smith 2144aa3045dSJed Brown ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 215ca3fa75bSLois Curfman McInnes ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr); 2164aa3045dSJed Brown ierr = ISGetIndices(iscol_local,&icol);CHKERRQ(ierr); 217b9b97703SBarry Smith ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr); 218b9b97703SBarry Smith ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr); 2194aa3045dSJed Brown ierr = ISGetSize(iscol,&Ncols);CHKERRQ(ierr); /* global number of columns, size of iscol_local */ 220ca3fa75bSLois Curfman McInnes 221ca3fa75bSLois Curfman McInnes /* No parallel redistribution currently supported! Should really check each index set 2227eba5e9cSLois Curfman McInnes to comfirm that it is OK. ... Currently supports only submatrix same partitioning as 2237eba5e9cSLois Curfman McInnes original matrix! */ 224ca3fa75bSLois Curfman McInnes 225ca3fa75bSLois Curfman McInnes ierr = MatGetLocalSize(A,&nlrows,&nlcols);CHKERRQ(ierr); 2267eba5e9cSLois Curfman McInnes ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr); 227ca3fa75bSLois Curfman McInnes 228ca3fa75bSLois Curfman McInnes /* Check submatrix call */ 229ca3fa75bSLois Curfman McInnes if (scall == MAT_REUSE_MATRIX) { 230e32f2f54SBarry Smith /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */ 2317eba5e9cSLois Curfman McInnes /* Really need to test rows and column sizes! */ 232ca3fa75bSLois Curfman McInnes newmat = *B; 233ca3fa75bSLois Curfman McInnes } else { 234ca3fa75bSLois Curfman McInnes /* Create and fill new matrix */ 235ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&newmat);CHKERRQ(ierr); 2364aa3045dSJed Brown ierr = MatSetSizes(newmat,nrows,ncols,PETSC_DECIDE,Ncols);CHKERRQ(ierr); 2377adad957SLisandro Dalcin ierr = MatSetType(newmat,((PetscObject)A)->type_name);CHKERRQ(ierr); 2380298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr); 239ca3fa75bSLois Curfman McInnes } 240ca3fa75bSLois Curfman McInnes 241ca3fa75bSLois Curfman McInnes /* Now extract the data pointers and do the copy, column at a time */ 242ca3fa75bSLois Curfman McInnes newmatd = (Mat_MPIDense*)newmat->data; 243ca3fa75bSLois Curfman McInnes bv = ((Mat_SeqDense*)newmatd->A->data)->v; 244ca3fa75bSLois Curfman McInnes 2454aa3045dSJed Brown for (i=0; i<Ncols; i++) { 24625a33276SHong Zhang av = v + ((Mat_SeqDense*)mat->A->data)->lda*icol[i]; 247ca3fa75bSLois Curfman McInnes for (j=0; j<nrows; j++) { 2487eba5e9cSLois Curfman McInnes *bv++ = av[irow[j] - rstart]; 249ca3fa75bSLois Curfman McInnes } 250ca3fa75bSLois Curfman McInnes } 251ca3fa75bSLois Curfman McInnes 252ca3fa75bSLois Curfman McInnes /* Assemble the matrices so that the correct flags are set */ 253ca3fa75bSLois Curfman McInnes ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 254ca3fa75bSLois Curfman McInnes ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 255ca3fa75bSLois Curfman McInnes 256ca3fa75bSLois Curfman McInnes /* Free work space */ 257ca3fa75bSLois Curfman McInnes ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr); 2585bdf786aSShri Abhyankar ierr = ISRestoreIndices(iscol_local,&icol);CHKERRQ(ierr); 25932bb1f2dSLisandro Dalcin ierr = ISDestroy(&iscol_local);CHKERRQ(ierr); 260ca3fa75bSLois Curfman McInnes *B = newmat; 261ca3fa75bSLois Curfman McInnes PetscFunctionReturn(0); 262ca3fa75bSLois Curfman McInnes } 263ca3fa75bSLois Curfman McInnes 2648c778c55SBarry Smith PetscErrorCode MatDenseRestoreArray_MPIDense(Mat A,PetscScalar *array[]) 265ff14e315SSatish Balay { 26673a71a0fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 26773a71a0fSBarry Smith PetscErrorCode ierr; 26873a71a0fSBarry Smith 2693a40ed3dSBarry Smith PetscFunctionBegin; 2708c778c55SBarry Smith ierr = MatDenseRestoreArray(a->A,array);CHKERRQ(ierr); 2713a40ed3dSBarry Smith PetscFunctionReturn(0); 272ff14e315SSatish Balay } 273ff14e315SSatish Balay 2748572280aSBarry Smith PetscErrorCode MatDenseRestoreArrayRead_MPIDense(Mat A,const PetscScalar *array[]) 2758572280aSBarry Smith { 2768572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 2778572280aSBarry Smith PetscErrorCode ierr; 2788572280aSBarry Smith 2798572280aSBarry Smith PetscFunctionBegin; 2808572280aSBarry Smith ierr = MatDenseRestoreArrayRead(a->A,array);CHKERRQ(ierr); 2818572280aSBarry Smith PetscFunctionReturn(0); 2828572280aSBarry Smith } 2838572280aSBarry Smith 284dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode) 2858965ea79SLois Curfman McInnes { 28639ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 287ce94432eSBarry Smith MPI_Comm comm; 288dfbe8321SBarry Smith PetscErrorCode ierr; 28913f74950SBarry Smith PetscInt nstash,reallocs; 2908965ea79SLois Curfman McInnes InsertMode addv; 2918965ea79SLois Curfman McInnes 2923a40ed3dSBarry Smith PetscFunctionBegin; 293ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)mat,&comm);CHKERRQ(ierr); 2948965ea79SLois Curfman McInnes /* make sure all processors are either in INSERTMODE or ADDMODE */ 295b2566f29SBarry Smith ierr = MPIU_Allreduce((PetscEnum*)&mat->insertmode,(PetscEnum*)&addv,1,MPIU_ENUM,MPI_BOR,comm);CHKERRQ(ierr); 296ce94432eSBarry Smith if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ARG_WRONGSTATE,"Cannot mix adds/inserts on different procs"); 297e0fa3b82SLois Curfman McInnes mat->insertmode = addv; /* in case this processor had no cache */ 2988965ea79SLois Curfman McInnes 299d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 3008798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 301ae15b995SBarry Smith ierr = PetscInfo2(mdn->A,"Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 3023a40ed3dSBarry Smith PetscFunctionReturn(0); 3038965ea79SLois Curfman McInnes } 3048965ea79SLois Curfman McInnes 305dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode) 3068965ea79SLois Curfman McInnes { 30739ddd567SLois Curfman McInnes Mat_MPIDense *mdn=(Mat_MPIDense*)mat->data; 3086849ba73SBarry Smith PetscErrorCode ierr; 30913f74950SBarry Smith PetscInt i,*row,*col,flg,j,rstart,ncols; 31013f74950SBarry Smith PetscMPIInt n; 31187828ca2SBarry Smith PetscScalar *val; 3128965ea79SLois Curfman McInnes 3133a40ed3dSBarry Smith PetscFunctionBegin; 3148965ea79SLois Curfman McInnes /* wait on receives */ 3157ef1d9bdSSatish Balay while (1) { 3168798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 3177ef1d9bdSSatish Balay if (!flg) break; 3188965ea79SLois Curfman McInnes 3197ef1d9bdSSatish Balay for (i=0; i<n;) { 3207ef1d9bdSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 3212205254eSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 3222205254eSKarl Rupp if (row[j] != rstart) break; 3232205254eSKarl Rupp } 3247ef1d9bdSSatish Balay if (j < n) ncols = j-i; 3257ef1d9bdSSatish Balay else ncols = n-i; 3267ef1d9bdSSatish Balay /* Now assemble all these values with a single function call */ 3274b4eb8d3SJed Brown ierr = MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr); 3287ef1d9bdSSatish Balay i = j; 3298965ea79SLois Curfman McInnes } 3307ef1d9bdSSatish Balay } 3318798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 3328965ea79SLois Curfman McInnes 33339ddd567SLois Curfman McInnes ierr = MatAssemblyBegin(mdn->A,mode);CHKERRQ(ierr); 33439ddd567SLois Curfman McInnes ierr = MatAssemblyEnd(mdn->A,mode);CHKERRQ(ierr); 3358965ea79SLois Curfman McInnes 3366d4a8577SBarry Smith if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 33739ddd567SLois Curfman McInnes ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 3388965ea79SLois Curfman McInnes } 3393a40ed3dSBarry Smith PetscFunctionReturn(0); 3408965ea79SLois Curfman McInnes } 3418965ea79SLois Curfman McInnes 342dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIDense(Mat A) 3438965ea79SLois Curfman McInnes { 344dfbe8321SBarry Smith PetscErrorCode ierr; 34539ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 3463a40ed3dSBarry Smith 3473a40ed3dSBarry Smith PetscFunctionBegin; 3483a40ed3dSBarry Smith ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 3493a40ed3dSBarry Smith PetscFunctionReturn(0); 3508965ea79SLois Curfman McInnes } 3518965ea79SLois Curfman McInnes 3528965ea79SLois Curfman McInnes /* the code does not do the diagonal entries correctly unless the 3538965ea79SLois Curfman McInnes matrix is square and the column and row owerships are identical. 3548965ea79SLois Curfman McInnes This is a BUG. The only way to fix it seems to be to access 3553501a2bdSLois Curfman McInnes mdn->A and mdn->B directly and not through the MatZeroRows() 3568965ea79SLois Curfman McInnes routine. 3578965ea79SLois Curfman McInnes */ 3582b40b63fSBarry Smith PetscErrorCode MatZeroRows_MPIDense(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 3598965ea79SLois Curfman McInnes { 36039ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 3616849ba73SBarry Smith PetscErrorCode ierr; 362d0f46423SBarry Smith PetscInt i,*owners = A->rmap->range; 36376ec1555SBarry Smith PetscInt *sizes,j,idx,nsends; 36413f74950SBarry Smith PetscInt nmax,*svalues,*starts,*owner,nrecvs; 3657adad957SLisandro Dalcin PetscInt *rvalues,tag = ((PetscObject)A)->tag,count,base,slen,*source; 36613f74950SBarry Smith PetscInt *lens,*lrows,*values; 36713f74950SBarry Smith PetscMPIInt n,imdex,rank = l->rank,size = l->size; 368ce94432eSBarry Smith MPI_Comm comm; 3698965ea79SLois Curfman McInnes MPI_Request *send_waits,*recv_waits; 3708965ea79SLois Curfman McInnes MPI_Status recv_status,*send_status; 371ace3abfcSBarry Smith PetscBool found; 37297b48c8fSBarry Smith const PetscScalar *xx; 37397b48c8fSBarry Smith PetscScalar *bb; 3748965ea79SLois Curfman McInnes 3753a40ed3dSBarry Smith PetscFunctionBegin; 376ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 377ce94432eSBarry Smith if (A->rmap->N != A->cmap->N) SETERRQ(comm,PETSC_ERR_SUP,"Only handles square matrices"); 378b9679d65SBarry Smith if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only handles matrices with identical column and row ownership"); 3798965ea79SLois Curfman McInnes /* first count number of contributors to each processor */ 380f628708eSJed Brown ierr = PetscCalloc1(2*size,&sizes);CHKERRQ(ierr); 381037dbc42SBarry Smith ierr = PetscMalloc1(N+1,&owner);CHKERRQ(ierr); /* see note*/ 3828965ea79SLois Curfman McInnes for (i=0; i<N; i++) { 3838965ea79SLois Curfman McInnes idx = rows[i]; 38435d8aa7fSBarry Smith found = PETSC_FALSE; 3858965ea79SLois Curfman McInnes for (j=0; j<size; j++) { 3868965ea79SLois Curfman McInnes if (idx >= owners[j] && idx < owners[j+1]) { 38776ec1555SBarry Smith sizes[2*j]++; sizes[2*j+1] = 1; owner[i] = j; found = PETSC_TRUE; break; 3888965ea79SLois Curfman McInnes } 3898965ea79SLois Curfman McInnes } 390e32f2f54SBarry Smith if (!found) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Index out of range"); 3918965ea79SLois Curfman McInnes } 3922205254eSKarl Rupp nsends = 0; 39376ec1555SBarry Smith for (i=0; i<size; i++) nsends += sizes[2*i+1]; 3948965ea79SLois Curfman McInnes 3958965ea79SLois Curfman McInnes /* inform other processors of number of messages and max length*/ 39676ec1555SBarry Smith ierr = PetscMaxSum(comm,sizes,&nmax,&nrecvs);CHKERRQ(ierr); 3978965ea79SLois Curfman McInnes 3988965ea79SLois Curfman McInnes /* post receives: */ 399785e854fSJed Brown ierr = PetscMalloc1((nrecvs+1)*(nmax+1),&rvalues);CHKERRQ(ierr); 400854ce69bSBarry Smith ierr = PetscMalloc1(nrecvs+1,&recv_waits);CHKERRQ(ierr); 4018965ea79SLois Curfman McInnes for (i=0; i<nrecvs; i++) { 40213f74950SBarry Smith ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 4038965ea79SLois Curfman McInnes } 4048965ea79SLois Curfman McInnes 4058965ea79SLois Curfman McInnes /* do sends: 4068965ea79SLois Curfman McInnes 1) starts[i] gives the starting index in svalues for stuff going to 4078965ea79SLois Curfman McInnes the ith processor 4088965ea79SLois Curfman McInnes */ 409854ce69bSBarry Smith ierr = PetscMalloc1(N+1,&svalues);CHKERRQ(ierr); 410854ce69bSBarry Smith ierr = PetscMalloc1(nsends+1,&send_waits);CHKERRQ(ierr); 411854ce69bSBarry Smith ierr = PetscMalloc1(size+1,&starts);CHKERRQ(ierr); 4128965ea79SLois Curfman McInnes 4138965ea79SLois Curfman McInnes starts[0] = 0; 41476ec1555SBarry Smith for (i=1; i<size; i++) starts[i] = starts[i-1] + sizes[2*i-2]; 4152205254eSKarl Rupp for (i=0; i<N; i++) svalues[starts[owner[i]]++] = rows[i]; 4162205254eSKarl Rupp 4172205254eSKarl Rupp starts[0] = 0; 41876ec1555SBarry Smith for (i=1; i<size+1; i++) starts[i] = starts[i-1] + sizes[2*i-2]; 4198965ea79SLois Curfman McInnes count = 0; 4208965ea79SLois Curfman McInnes for (i=0; i<size; i++) { 42176ec1555SBarry Smith if (sizes[2*i+1]) { 42276ec1555SBarry Smith ierr = MPI_Isend(svalues+starts[i],sizes[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 4238965ea79SLois Curfman McInnes } 4248965ea79SLois Curfman McInnes } 425606d414cSSatish Balay ierr = PetscFree(starts);CHKERRQ(ierr); 4268965ea79SLois Curfman McInnes 4278965ea79SLois Curfman McInnes base = owners[rank]; 4288965ea79SLois Curfman McInnes 4298965ea79SLois Curfman McInnes /* wait on receives */ 430dcca6d9dSJed Brown ierr = PetscMalloc2(nrecvs,&lens,nrecvs,&source);CHKERRQ(ierr); 43174ed9c26SBarry Smith count = nrecvs; 43274ed9c26SBarry Smith slen = 0; 4338965ea79SLois Curfman McInnes while (count) { 434ca161407SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 4358965ea79SLois Curfman McInnes /* unpack receives into our local space */ 43613f74950SBarry Smith ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr); 4372205254eSKarl Rupp 4388965ea79SLois Curfman McInnes source[imdex] = recv_status.MPI_SOURCE; 4398965ea79SLois Curfman McInnes lens[imdex] = n; 4408965ea79SLois Curfman McInnes slen += n; 4418965ea79SLois Curfman McInnes count--; 4428965ea79SLois Curfman McInnes } 443606d414cSSatish Balay ierr = PetscFree(recv_waits);CHKERRQ(ierr); 4448965ea79SLois Curfman McInnes 4458965ea79SLois Curfman McInnes /* move the data into the send scatter */ 446854ce69bSBarry Smith ierr = PetscMalloc1(slen+1,&lrows);CHKERRQ(ierr); 4478965ea79SLois Curfman McInnes count = 0; 4488965ea79SLois Curfman McInnes for (i=0; i<nrecvs; i++) { 4498965ea79SLois Curfman McInnes values = rvalues + i*nmax; 4508965ea79SLois Curfman McInnes for (j=0; j<lens[i]; j++) { 4518965ea79SLois Curfman McInnes lrows[count++] = values[j] - base; 4528965ea79SLois Curfman McInnes } 4538965ea79SLois Curfman McInnes } 454606d414cSSatish Balay ierr = PetscFree(rvalues);CHKERRQ(ierr); 45574ed9c26SBarry Smith ierr = PetscFree2(lens,source);CHKERRQ(ierr); 456606d414cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 45776ec1555SBarry Smith ierr = PetscFree(sizes);CHKERRQ(ierr); 4588965ea79SLois Curfman McInnes 45997b48c8fSBarry Smith /* fix right hand side if needed */ 46097b48c8fSBarry Smith if (x && b) { 46197b48c8fSBarry Smith ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr); 46297b48c8fSBarry Smith ierr = VecGetArray(b,&bb);CHKERRQ(ierr); 46397b48c8fSBarry Smith for (i=0; i<slen; i++) { 46497b48c8fSBarry Smith bb[lrows[i]] = diag*xx[lrows[i]]; 46597b48c8fSBarry Smith } 46697b48c8fSBarry Smith ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr); 46797b48c8fSBarry Smith ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr); 46897b48c8fSBarry Smith } 46997b48c8fSBarry Smith 4708965ea79SLois Curfman McInnes /* actually zap the local rows */ 471b9679d65SBarry Smith ierr = MatZeroRows(l->A,slen,lrows,0.0,0,0);CHKERRQ(ierr); 472e2eb51b1SBarry Smith if (diag != 0.0) { 473b9679d65SBarry Smith Mat_SeqDense *ll = (Mat_SeqDense*)l->A->data; 474b9679d65SBarry Smith PetscInt m = ll->lda, i; 475b9679d65SBarry Smith 476b9679d65SBarry Smith for (i=0; i<slen; i++) { 477b9679d65SBarry Smith ll->v[lrows[i] + m*(A->cmap->rstart + lrows[i])] = diag; 478b9679d65SBarry Smith } 479b9679d65SBarry Smith } 480606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 4818965ea79SLois Curfman McInnes 4828965ea79SLois Curfman McInnes /* wait on sends */ 4838965ea79SLois Curfman McInnes if (nsends) { 484785e854fSJed Brown ierr = PetscMalloc1(nsends,&send_status);CHKERRQ(ierr); 485ca161407SBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 486606d414cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 4878965ea79SLois Curfman McInnes } 488606d414cSSatish Balay ierr = PetscFree(send_waits);CHKERRQ(ierr); 489606d414cSSatish Balay ierr = PetscFree(svalues);CHKERRQ(ierr); 4903a40ed3dSBarry Smith PetscFunctionReturn(0); 4918965ea79SLois Curfman McInnes } 4928965ea79SLois Curfman McInnes 493cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMult_SeqDense(Mat,Vec,Vec); 494cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultAdd_SeqDense(Mat,Vec,Vec,Vec); 495cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTranspose_SeqDense(Mat,Vec,Vec); 496cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTransposeAdd_SeqDense(Mat,Vec,Vec,Vec); 497cc2e6a90SBarry Smith 498dfbe8321SBarry Smith PetscErrorCode MatMult_MPIDense(Mat mat,Vec xx,Vec yy) 4998965ea79SLois Curfman McInnes { 50039ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 501dfbe8321SBarry Smith PetscErrorCode ierr; 502c456f294SBarry Smith 5033a40ed3dSBarry Smith PetscFunctionBegin; 504ca9f406cSSatish Balay ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 505ca9f406cSSatish Balay ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 506cc2e6a90SBarry Smith ierr = MatMult_SeqDense(mdn->A,mdn->lvec,yy);CHKERRQ(ierr); 5073a40ed3dSBarry Smith PetscFunctionReturn(0); 5088965ea79SLois Curfman McInnes } 5098965ea79SLois Curfman McInnes 510dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz) 5118965ea79SLois Curfman McInnes { 51239ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 513dfbe8321SBarry Smith PetscErrorCode ierr; 514c456f294SBarry Smith 5153a40ed3dSBarry Smith PetscFunctionBegin; 516ca9f406cSSatish Balay ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 517ca9f406cSSatish Balay ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 518cc2e6a90SBarry Smith ierr = MatMultAdd_SeqDense(mdn->A,mdn->lvec,yy,zz);CHKERRQ(ierr); 5193a40ed3dSBarry Smith PetscFunctionReturn(0); 5208965ea79SLois Curfman McInnes } 5218965ea79SLois Curfman McInnes 522dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIDense(Mat A,Vec xx,Vec yy) 523096963f5SLois Curfman McInnes { 524096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 525dfbe8321SBarry Smith PetscErrorCode ierr; 52687828ca2SBarry Smith PetscScalar zero = 0.0; 527096963f5SLois Curfman McInnes 5283a40ed3dSBarry Smith PetscFunctionBegin; 5292dcb1b2aSMatthew Knepley ierr = VecSet(yy,zero);CHKERRQ(ierr); 530cc2e6a90SBarry Smith ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr); 531ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 532ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 5333a40ed3dSBarry Smith PetscFunctionReturn(0); 534096963f5SLois Curfman McInnes } 535096963f5SLois Curfman McInnes 536dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz) 537096963f5SLois Curfman McInnes { 538096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 539dfbe8321SBarry Smith PetscErrorCode ierr; 540096963f5SLois Curfman McInnes 5413a40ed3dSBarry Smith PetscFunctionBegin; 5423501a2bdSLois Curfman McInnes ierr = VecCopy(yy,zz);CHKERRQ(ierr); 543cc2e6a90SBarry Smith ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr); 544ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 545ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 5463a40ed3dSBarry Smith PetscFunctionReturn(0); 547096963f5SLois Curfman McInnes } 548096963f5SLois Curfman McInnes 549dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIDense(Mat A,Vec v) 5508965ea79SLois Curfman McInnes { 55139ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 552096963f5SLois Curfman McInnes Mat_SeqDense *aloc = (Mat_SeqDense*)a->A->data; 553dfbe8321SBarry Smith PetscErrorCode ierr; 554d0f46423SBarry Smith PetscInt len,i,n,m = A->rmap->n,radd; 55587828ca2SBarry Smith PetscScalar *x,zero = 0.0; 556ed3cc1f0SBarry Smith 5573a40ed3dSBarry Smith PetscFunctionBegin; 5582dcb1b2aSMatthew Knepley ierr = VecSet(v,zero);CHKERRQ(ierr); 5591ebc52fbSHong Zhang ierr = VecGetArray(v,&x);CHKERRQ(ierr); 560096963f5SLois Curfman McInnes ierr = VecGetSize(v,&n);CHKERRQ(ierr); 561e32f2f54SBarry Smith if (n != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec"); 562d0f46423SBarry Smith len = PetscMin(a->A->rmap->n,a->A->cmap->n); 563d0f46423SBarry Smith radd = A->rmap->rstart*m; 56444cd7ae7SLois Curfman McInnes for (i=0; i<len; i++) { 565096963f5SLois Curfman McInnes x[i] = aloc->v[radd + i*m + i]; 566096963f5SLois Curfman McInnes } 5671ebc52fbSHong Zhang ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 5683a40ed3dSBarry Smith PetscFunctionReturn(0); 5698965ea79SLois Curfman McInnes } 5708965ea79SLois Curfman McInnes 571dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIDense(Mat mat) 5728965ea79SLois Curfman McInnes { 5733501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 574dfbe8321SBarry Smith PetscErrorCode ierr; 575ed3cc1f0SBarry Smith 5763a40ed3dSBarry Smith PetscFunctionBegin; 577aa482453SBarry Smith #if defined(PETSC_USE_LOG) 578d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D, Cols=%D",mat->rmap->N,mat->cmap->N); 5798965ea79SLois Curfman McInnes #endif 5808798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 5816bf464f9SBarry Smith ierr = MatDestroy(&mdn->A);CHKERRQ(ierr); 5826bf464f9SBarry Smith ierr = VecDestroy(&mdn->lvec);CHKERRQ(ierr); 5836bf464f9SBarry Smith ierr = VecScatterDestroy(&mdn->Mvctx);CHKERRQ(ierr); 58401b82886SBarry Smith 585bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 586dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 5878baccfbdSHong Zhang 588*49a6ff4bSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",NULL);CHKERRQ(ierr); 5898baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",NULL);CHKERRQ(ierr); 5908572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",NULL);CHKERRQ(ierr); 5918572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",NULL);CHKERRQ(ierr); 5928572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",NULL);CHKERRQ(ierr); 593d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",NULL);CHKERRQ(ierr); 594d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",NULL);CHKERRQ(ierr); 5958baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 5968baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",NULL);CHKERRQ(ierr); 5978baccfbdSHong Zhang #endif 598bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",NULL);CHKERRQ(ierr); 599bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMult_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 600bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 601bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 6028baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMult_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 6038baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultSymbolic_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 6048baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultNumeric_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 60586aefd0dSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",NULL);CHKERRQ(ierr); 60686aefd0dSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",NULL);CHKERRQ(ierr); 6073a40ed3dSBarry Smith PetscFunctionReturn(0); 6088965ea79SLois Curfman McInnes } 60939ddd567SLois Curfman McInnes 6106849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_Binary(Mat mat,PetscViewer viewer) 6118965ea79SLois Curfman McInnes { 61239ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 613dfbe8321SBarry Smith PetscErrorCode ierr; 614aa05aa95SBarry Smith PetscViewerFormat format; 615aa05aa95SBarry Smith int fd; 616d0f46423SBarry Smith PetscInt header[4],mmax,N = mat->cmap->N,i,j,m,k; 617aa05aa95SBarry Smith PetscMPIInt rank,tag = ((PetscObject)viewer)->tag,size; 618578230a0SSatish Balay PetscScalar *work,*v,*vv; 619aa05aa95SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)mdn->A->data; 6207056b6fcSBarry Smith 6213a40ed3dSBarry Smith PetscFunctionBegin; 62239ddd567SLois Curfman McInnes if (mdn->size == 1) { 62339ddd567SLois Curfman McInnes ierr = MatView(mdn->A,viewer);CHKERRQ(ierr); 624aa05aa95SBarry Smith } else { 625aa05aa95SBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 626ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr); 627ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&size);CHKERRQ(ierr); 628aa05aa95SBarry Smith 629aa05aa95SBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 630f4403165SShri Abhyankar if (format == PETSC_VIEWER_NATIVE) { 631aa05aa95SBarry Smith 632aa05aa95SBarry Smith if (!rank) { 633aa05aa95SBarry Smith /* store the matrix as a dense matrix */ 6340700a824SBarry Smith header[0] = MAT_FILE_CLASSID; 635d0f46423SBarry Smith header[1] = mat->rmap->N; 636aa05aa95SBarry Smith header[2] = N; 637aa05aa95SBarry Smith header[3] = MATRIX_BINARY_FORMAT_DENSE; 638aa05aa95SBarry Smith ierr = PetscBinaryWrite(fd,header,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 639aa05aa95SBarry Smith 640aa05aa95SBarry Smith /* get largest work array needed for transposing array */ 641d0f46423SBarry Smith mmax = mat->rmap->n; 642aa05aa95SBarry Smith for (i=1; i<size; i++) { 643d0f46423SBarry Smith mmax = PetscMax(mmax,mat->rmap->range[i+1] - mat->rmap->range[i]); 6448965ea79SLois Curfman McInnes } 645785e854fSJed Brown ierr = PetscMalloc1(mmax*N,&work);CHKERRQ(ierr); 646aa05aa95SBarry Smith 647aa05aa95SBarry Smith /* write out local array, by rows */ 648d0f46423SBarry Smith m = mat->rmap->n; 649aa05aa95SBarry Smith v = a->v; 650aa05aa95SBarry Smith for (j=0; j<N; j++) { 651aa05aa95SBarry Smith for (i=0; i<m; i++) { 652578230a0SSatish Balay work[j + i*N] = *v++; 653aa05aa95SBarry Smith } 654aa05aa95SBarry Smith } 655aa05aa95SBarry Smith ierr = PetscBinaryWrite(fd,work,m*N,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr); 656aa05aa95SBarry Smith /* get largest work array to receive messages from other processes, excludes process zero */ 657aa05aa95SBarry Smith mmax = 0; 658aa05aa95SBarry Smith for (i=1; i<size; i++) { 659d0f46423SBarry Smith mmax = PetscMax(mmax,mat->rmap->range[i+1] - mat->rmap->range[i]); 660aa05aa95SBarry Smith } 661785e854fSJed Brown ierr = PetscMalloc1(mmax*N,&vv);CHKERRQ(ierr); 662aa05aa95SBarry Smith for (k = 1; k < size; k++) { 663f8009846SMatthew Knepley v = vv; 664d0f46423SBarry Smith m = mat->rmap->range[k+1] - mat->rmap->range[k]; 665ce94432eSBarry Smith ierr = MPIULong_Recv(v,m*N,MPIU_SCALAR,k,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 666aa05aa95SBarry Smith 667aa05aa95SBarry Smith for (j = 0; j < N; j++) { 668aa05aa95SBarry Smith for (i = 0; i < m; i++) { 669578230a0SSatish Balay work[j + i*N] = *v++; 670aa05aa95SBarry Smith } 671aa05aa95SBarry Smith } 672aa05aa95SBarry Smith ierr = PetscBinaryWrite(fd,work,m*N,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr); 673aa05aa95SBarry Smith } 674aa05aa95SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 675578230a0SSatish Balay ierr = PetscFree(vv);CHKERRQ(ierr); 676aa05aa95SBarry Smith } else { 677ce94432eSBarry Smith ierr = MPIULong_Send(a->v,mat->rmap->n*mat->cmap->N,MPIU_SCALAR,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 678aa05aa95SBarry Smith } 6796a9046bcSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"To store a parallel dense matrix you must first call PetscViewerPushFormat(viewer,PETSC_VIEWER_NATIVE)"); 680aa05aa95SBarry Smith } 6813a40ed3dSBarry Smith PetscFunctionReturn(0); 6828965ea79SLois Curfman McInnes } 6838965ea79SLois Curfman McInnes 6847da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqDense(Mat,PetscViewer); 6859804daf3SBarry Smith #include <petscdraw.h> 6866849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 6878965ea79SLois Curfman McInnes { 68839ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 689dfbe8321SBarry Smith PetscErrorCode ierr; 6907da1fb6eSBarry Smith PetscMPIInt rank = mdn->rank; 69119fd82e9SBarry Smith PetscViewerType vtype; 692ace3abfcSBarry Smith PetscBool iascii,isdraw; 693b0a32e0cSBarry Smith PetscViewer sviewer; 694f3ef73ceSBarry Smith PetscViewerFormat format; 6958965ea79SLois Curfman McInnes 6963a40ed3dSBarry Smith PetscFunctionBegin; 697251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 698251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 69932077d6dSBarry Smith if (iascii) { 700b0a32e0cSBarry Smith ierr = PetscViewerGetType(viewer,&vtype);CHKERRQ(ierr); 701b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 702456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 7034e220ebcSLois Curfman McInnes MatInfo info; 704888f2ed8SSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 7051575c14dSBarry Smith ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr); 7067b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer," [%d] local rows %D nz %D nz alloced %D mem %D \n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory);CHKERRQ(ierr); 707b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 7081575c14dSBarry Smith ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr); 7095d00a290SHong Zhang ierr = VecScatterView(mdn->Mvctx,viewer);CHKERRQ(ierr); 7103a40ed3dSBarry Smith PetscFunctionReturn(0); 711fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 7123a40ed3dSBarry Smith PetscFunctionReturn(0); 7138965ea79SLois Curfman McInnes } 714f1af5d2fSBarry Smith } else if (isdraw) { 715b0a32e0cSBarry Smith PetscDraw draw; 716ace3abfcSBarry Smith PetscBool isnull; 717f1af5d2fSBarry Smith 718b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 719b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 720f1af5d2fSBarry Smith if (isnull) PetscFunctionReturn(0); 721f1af5d2fSBarry Smith } 72277ed5343SBarry Smith 7237da1fb6eSBarry Smith { 7248965ea79SLois Curfman McInnes /* assemble the entire matrix onto first processor. */ 7258965ea79SLois Curfman McInnes Mat A; 726d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,m,row,i,nz; 727ba8c8a56SBarry Smith PetscInt *cols; 728ba8c8a56SBarry Smith PetscScalar *vals; 7298965ea79SLois Curfman McInnes 730ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr); 7318965ea79SLois Curfman McInnes if (!rank) { 732f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 7333a40ed3dSBarry Smith } else { 734f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 7358965ea79SLois Curfman McInnes } 7367adad957SLisandro Dalcin /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */ 737878740d9SKris Buschelman ierr = MatSetType(A,MATMPIDENSE);CHKERRQ(ierr); 7380298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(A,NULL);CHKERRQ(ierr); 7393bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr); 7408965ea79SLois Curfman McInnes 74139ddd567SLois Curfman McInnes /* Copy the matrix ... This isn't the most efficient means, 74239ddd567SLois Curfman McInnes but it's quick for now */ 74351022da4SBarry Smith A->insertmode = INSERT_VALUES; 7442205254eSKarl Rupp 7452205254eSKarl Rupp row = mat->rmap->rstart; 7462205254eSKarl Rupp m = mdn->A->rmap->n; 7478965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 748ba8c8a56SBarry Smith ierr = MatGetRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 749ba8c8a56SBarry Smith ierr = MatSetValues_MPIDense(A,1,&row,nz,cols,vals,INSERT_VALUES);CHKERRQ(ierr); 750ba8c8a56SBarry Smith ierr = MatRestoreRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 75139ddd567SLois Curfman McInnes row++; 7528965ea79SLois Curfman McInnes } 7538965ea79SLois Curfman McInnes 7546d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 7556d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 7563f08860eSBarry Smith ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 757b9b97703SBarry Smith if (!rank) { 7581a9d3c3cSBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPIDense*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr); 7597da1fb6eSBarry Smith ierr = MatView_SeqDense(((Mat_MPIDense*)(A->data))->A,sviewer);CHKERRQ(ierr); 7608965ea79SLois Curfman McInnes } 7613f08860eSBarry Smith ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 762b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 7636bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 7648965ea79SLois Curfman McInnes } 7653a40ed3dSBarry Smith PetscFunctionReturn(0); 7668965ea79SLois Curfman McInnes } 7678965ea79SLois Curfman McInnes 768dfbe8321SBarry Smith PetscErrorCode MatView_MPIDense(Mat mat,PetscViewer viewer) 7698965ea79SLois Curfman McInnes { 770dfbe8321SBarry Smith PetscErrorCode ierr; 771ace3abfcSBarry Smith PetscBool iascii,isbinary,isdraw,issocket; 7728965ea79SLois Curfman McInnes 773433994e6SBarry Smith PetscFunctionBegin; 774251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 775251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 776251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 777251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 7780f5bd95cSBarry Smith 77932077d6dSBarry Smith if (iascii || issocket || isdraw) { 780f1af5d2fSBarry Smith ierr = MatView_MPIDense_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 7810f5bd95cSBarry Smith } else if (isbinary) { 7823a40ed3dSBarry Smith ierr = MatView_MPIDense_Binary(mat,viewer);CHKERRQ(ierr); 78311aeaf0aSBarry Smith } 7843a40ed3dSBarry Smith PetscFunctionReturn(0); 7858965ea79SLois Curfman McInnes } 7868965ea79SLois Curfman McInnes 787dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info) 7888965ea79SLois Curfman McInnes { 7893501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 7903501a2bdSLois Curfman McInnes Mat mdn = mat->A; 791dfbe8321SBarry Smith PetscErrorCode ierr; 792329f5518SBarry Smith PetscReal isend[5],irecv[5]; 7938965ea79SLois Curfman McInnes 7943a40ed3dSBarry Smith PetscFunctionBegin; 7954e220ebcSLois Curfman McInnes info->block_size = 1.0; 7962205254eSKarl Rupp 7974e220ebcSLois Curfman McInnes ierr = MatGetInfo(mdn,MAT_LOCAL,info);CHKERRQ(ierr); 7982205254eSKarl Rupp 7994e220ebcSLois Curfman McInnes isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 8004e220ebcSLois Curfman McInnes isend[3] = info->memory; isend[4] = info->mallocs; 8018965ea79SLois Curfman McInnes if (flag == MAT_LOCAL) { 8024e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 8034e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 8044e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 8054e220ebcSLois Curfman McInnes info->memory = isend[3]; 8064e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 8078965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 808b2566f29SBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 8092205254eSKarl Rupp 8104e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 8114e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 8124e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 8134e220ebcSLois Curfman McInnes info->memory = irecv[3]; 8144e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 8158965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 816b2566f29SBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 8172205254eSKarl Rupp 8184e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 8194e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 8204e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 8214e220ebcSLois Curfman McInnes info->memory = irecv[3]; 8224e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 8238965ea79SLois Curfman McInnes } 8244e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 8254e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 8264e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 8273a40ed3dSBarry Smith PetscFunctionReturn(0); 8288965ea79SLois Curfman McInnes } 8298965ea79SLois Curfman McInnes 830ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIDense(Mat A,MatOption op,PetscBool flg) 8318965ea79SLois Curfman McInnes { 83239ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 833dfbe8321SBarry Smith PetscErrorCode ierr; 8348965ea79SLois Curfman McInnes 8353a40ed3dSBarry Smith PetscFunctionBegin; 83612c028f9SKris Buschelman switch (op) { 837512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 83812c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 83912c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 84043674050SBarry Smith MatCheckPreallocated(A,1); 8414e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 84212c028f9SKris Buschelman break; 84312c028f9SKris Buschelman case MAT_ROW_ORIENTED: 84443674050SBarry Smith MatCheckPreallocated(A,1); 8454e0d8c25SBarry Smith a->roworiented = flg; 8464e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 84712c028f9SKris Buschelman break; 8484e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 84913fa8e87SLisandro Dalcin case MAT_KEEP_NONZERO_PATTERN: 85012c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 851290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 85212c028f9SKris Buschelman break; 85312c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 8544e0d8c25SBarry Smith a->donotstash = flg; 85512c028f9SKris Buschelman break; 85677e54ba9SKris Buschelman case MAT_SYMMETRIC: 85777e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 8589a4540c5SBarry Smith case MAT_HERMITIAN: 8599a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 860600fe468SBarry Smith case MAT_IGNORE_LOWER_TRIANGULAR: 861290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 86277e54ba9SKris Buschelman break; 86312c028f9SKris Buschelman default: 864e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %s",MatOptions[op]); 8653a40ed3dSBarry Smith } 8663a40ed3dSBarry Smith PetscFunctionReturn(0); 8678965ea79SLois Curfman McInnes } 8688965ea79SLois Curfman McInnes 8698965ea79SLois Curfman McInnes 870dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIDense(Mat A,Vec ll,Vec rr) 8715b2fa520SLois Curfman McInnes { 8725b2fa520SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 8735b2fa520SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)mdn->A->data; 874bca11509SBarry Smith const PetscScalar *l,*r; 875bca11509SBarry Smith PetscScalar x,*v; 876dfbe8321SBarry Smith PetscErrorCode ierr; 877d0f46423SBarry Smith PetscInt i,j,s2a,s3a,s2,s3,m=mdn->A->rmap->n,n=mdn->A->cmap->n; 8785b2fa520SLois Curfman McInnes 8795b2fa520SLois Curfman McInnes PetscFunctionBegin; 88072d926a5SLois Curfman McInnes ierr = MatGetLocalSize(A,&s2,&s3);CHKERRQ(ierr); 8815b2fa520SLois Curfman McInnes if (ll) { 88272d926a5SLois Curfman McInnes ierr = VecGetLocalSize(ll,&s2a);CHKERRQ(ierr); 883e32f2f54SBarry Smith if (s2a != s2) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vector non-conforming local size, %d != %d.", s2a, s2); 884bca11509SBarry Smith ierr = VecGetArrayRead(ll,&l);CHKERRQ(ierr); 8855b2fa520SLois Curfman McInnes for (i=0; i<m; i++) { 8865b2fa520SLois Curfman McInnes x = l[i]; 8875b2fa520SLois Curfman McInnes v = mat->v + i; 8885b2fa520SLois Curfman McInnes for (j=0; j<n; j++) { (*v) *= x; v+= m;} 8895b2fa520SLois Curfman McInnes } 890bca11509SBarry Smith ierr = VecRestoreArrayRead(ll,&l);CHKERRQ(ierr); 891efee365bSSatish Balay ierr = PetscLogFlops(n*m);CHKERRQ(ierr); 8925b2fa520SLois Curfman McInnes } 8935b2fa520SLois Curfman McInnes if (rr) { 894175be7b4SMatthew Knepley ierr = VecGetLocalSize(rr,&s3a);CHKERRQ(ierr); 895e32f2f54SBarry Smith if (s3a != s3) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vec non-conforming local size, %d != %d.", s3a, s3); 896ca9f406cSSatish Balay ierr = VecScatterBegin(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 897ca9f406cSSatish Balay ierr = VecScatterEnd(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 898bca11509SBarry Smith ierr = VecGetArrayRead(mdn->lvec,&r);CHKERRQ(ierr); 8995b2fa520SLois Curfman McInnes for (i=0; i<n; i++) { 9005b2fa520SLois Curfman McInnes x = r[i]; 9015b2fa520SLois Curfman McInnes v = mat->v + i*m; 9022205254eSKarl Rupp for (j=0; j<m; j++) (*v++) *= x; 9035b2fa520SLois Curfman McInnes } 904bca11509SBarry Smith ierr = VecRestoreArrayRead(mdn->lvec,&r);CHKERRQ(ierr); 905efee365bSSatish Balay ierr = PetscLogFlops(n*m);CHKERRQ(ierr); 9065b2fa520SLois Curfman McInnes } 9075b2fa520SLois Curfman McInnes PetscFunctionReturn(0); 9085b2fa520SLois Curfman McInnes } 9095b2fa520SLois Curfman McInnes 910dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIDense(Mat A,NormType type,PetscReal *nrm) 911096963f5SLois Curfman McInnes { 9123501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 9133501a2bdSLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)mdn->A->data; 914dfbe8321SBarry Smith PetscErrorCode ierr; 91513f74950SBarry Smith PetscInt i,j; 916329f5518SBarry Smith PetscReal sum = 0.0; 91787828ca2SBarry Smith PetscScalar *v = mat->v; 9183501a2bdSLois Curfman McInnes 9193a40ed3dSBarry Smith PetscFunctionBegin; 9203501a2bdSLois Curfman McInnes if (mdn->size == 1) { 921064f8208SBarry Smith ierr = MatNorm(mdn->A,type,nrm);CHKERRQ(ierr); 9223501a2bdSLois Curfman McInnes } else { 9233501a2bdSLois Curfman McInnes if (type == NORM_FROBENIUS) { 924d0f46423SBarry Smith for (i=0; i<mdn->A->cmap->n*mdn->A->rmap->n; i++) { 925329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 9263501a2bdSLois Curfman McInnes } 927b2566f29SBarry Smith ierr = MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 9288f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 929dc0b31edSSatish Balay ierr = PetscLogFlops(2.0*mdn->A->cmap->n*mdn->A->rmap->n);CHKERRQ(ierr); 9303a40ed3dSBarry Smith } else if (type == NORM_1) { 931329f5518SBarry Smith PetscReal *tmp,*tmp2; 932dcca6d9dSJed Brown ierr = PetscMalloc2(A->cmap->N,&tmp,A->cmap->N,&tmp2);CHKERRQ(ierr); 93374ed9c26SBarry Smith ierr = PetscMemzero(tmp,A->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 93474ed9c26SBarry Smith ierr = PetscMemzero(tmp2,A->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 935064f8208SBarry Smith *nrm = 0.0; 9363501a2bdSLois Curfman McInnes v = mat->v; 937d0f46423SBarry Smith for (j=0; j<mdn->A->cmap->n; j++) { 938d0f46423SBarry Smith for (i=0; i<mdn->A->rmap->n; i++) { 93967e560aaSBarry Smith tmp[j] += PetscAbsScalar(*v); v++; 9403501a2bdSLois Curfman McInnes } 9413501a2bdSLois Curfman McInnes } 942b2566f29SBarry Smith ierr = MPIU_Allreduce(tmp,tmp2,A->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 943d0f46423SBarry Smith for (j=0; j<A->cmap->N; j++) { 944064f8208SBarry Smith if (tmp2[j] > *nrm) *nrm = tmp2[j]; 9453501a2bdSLois Curfman McInnes } 9468627564fSBarry Smith ierr = PetscFree2(tmp,tmp2);CHKERRQ(ierr); 947d0f46423SBarry Smith ierr = PetscLogFlops(A->cmap->n*A->rmap->n);CHKERRQ(ierr); 9483a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 949329f5518SBarry Smith PetscReal ntemp; 9503501a2bdSLois Curfman McInnes ierr = MatNorm(mdn->A,type,&ntemp);CHKERRQ(ierr); 951b2566f29SBarry Smith ierr = MPIU_Allreduce(&ntemp,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 952ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"No support for two norm"); 9533501a2bdSLois Curfman McInnes } 9543a40ed3dSBarry Smith PetscFunctionReturn(0); 9553501a2bdSLois Curfman McInnes } 9563501a2bdSLois Curfman McInnes 957fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIDense(Mat A,MatReuse reuse,Mat *matout) 9583501a2bdSLois Curfman McInnes { 9593501a2bdSLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 9603501a2bdSLois Curfman McInnes Mat_SeqDense *Aloc = (Mat_SeqDense*)a->A->data; 9613501a2bdSLois Curfman McInnes Mat B; 962d0f46423SBarry Smith PetscInt M = A->rmap->N,N = A->cmap->N,m,n,*rwork,rstart = A->rmap->rstart; 9636849ba73SBarry Smith PetscErrorCode ierr; 96413f74950SBarry Smith PetscInt j,i; 96587828ca2SBarry Smith PetscScalar *v; 9663501a2bdSLois Curfman McInnes 9673a40ed3dSBarry Smith PetscFunctionBegin; 968cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 969ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 970d0f46423SBarry Smith ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr); 9717adad957SLisandro Dalcin ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr); 9720298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(B,NULL);CHKERRQ(ierr); 973fc4dec0aSBarry Smith } else { 974fc4dec0aSBarry Smith B = *matout; 975fc4dec0aSBarry Smith } 9763501a2bdSLois Curfman McInnes 977d0f46423SBarry Smith m = a->A->rmap->n; n = a->A->cmap->n; v = Aloc->v; 978785e854fSJed Brown ierr = PetscMalloc1(m,&rwork);CHKERRQ(ierr); 9793501a2bdSLois Curfman McInnes for (i=0; i<m; i++) rwork[i] = rstart + i; 9801acff37aSSatish Balay for (j=0; j<n; j++) { 9813501a2bdSLois Curfman McInnes ierr = MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES);CHKERRQ(ierr); 9823501a2bdSLois Curfman McInnes v += m; 9833501a2bdSLois Curfman McInnes } 984606d414cSSatish Balay ierr = PetscFree(rwork);CHKERRQ(ierr); 9856d4a8577SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 9866d4a8577SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 987cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) { 9883501a2bdSLois Curfman McInnes *matout = B; 9893501a2bdSLois Curfman McInnes } else { 99028be2f97SBarry Smith ierr = MatHeaderMerge(A,&B);CHKERRQ(ierr); 9913501a2bdSLois Curfman McInnes } 9923a40ed3dSBarry Smith PetscFunctionReturn(0); 993096963f5SLois Curfman McInnes } 994096963f5SLois Curfman McInnes 99544cd7ae7SLois Curfman McInnes 9966849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat*); 997d84338a6SBarry Smith extern PetscErrorCode MatScale_MPIDense(Mat,PetscScalar); 9988965ea79SLois Curfman McInnes 9994994cf47SJed Brown PetscErrorCode MatSetUp_MPIDense(Mat A) 1000273d9f13SBarry Smith { 1001dfbe8321SBarry Smith PetscErrorCode ierr; 1002273d9f13SBarry Smith 1003273d9f13SBarry Smith PetscFunctionBegin; 1004273d9f13SBarry Smith ierr = MatMPIDenseSetPreallocation(A,0);CHKERRQ(ierr); 1005273d9f13SBarry Smith PetscFunctionReturn(0); 1006273d9f13SBarry Smith } 1007273d9f13SBarry Smith 1008488007eeSBarry Smith PetscErrorCode MatAXPY_MPIDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str) 1009488007eeSBarry Smith { 1010488007eeSBarry Smith PetscErrorCode ierr; 1011488007eeSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)Y->data, *B = (Mat_MPIDense*)X->data; 1012488007eeSBarry Smith 1013488007eeSBarry Smith PetscFunctionBegin; 1014488007eeSBarry Smith ierr = MatAXPY(A->A,alpha,B->A,str);CHKERRQ(ierr); 1015a3fa217bSJose E. Roman ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr); 1016488007eeSBarry Smith PetscFunctionReturn(0); 1017488007eeSBarry Smith } 1018488007eeSBarry Smith 10197087cfbeSBarry Smith PetscErrorCode MatConjugate_MPIDense(Mat mat) 1020ba337c44SJed Brown { 1021ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)mat->data; 1022ba337c44SJed Brown PetscErrorCode ierr; 1023ba337c44SJed Brown 1024ba337c44SJed Brown PetscFunctionBegin; 1025ba337c44SJed Brown ierr = MatConjugate(a->A);CHKERRQ(ierr); 1026ba337c44SJed Brown PetscFunctionReturn(0); 1027ba337c44SJed Brown } 1028ba337c44SJed Brown 1029ba337c44SJed Brown PetscErrorCode MatRealPart_MPIDense(Mat A) 1030ba337c44SJed Brown { 1031ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1032ba337c44SJed Brown PetscErrorCode ierr; 1033ba337c44SJed Brown 1034ba337c44SJed Brown PetscFunctionBegin; 1035ba337c44SJed Brown ierr = MatRealPart(a->A);CHKERRQ(ierr); 1036ba337c44SJed Brown PetscFunctionReturn(0); 1037ba337c44SJed Brown } 1038ba337c44SJed Brown 1039ba337c44SJed Brown PetscErrorCode MatImaginaryPart_MPIDense(Mat A) 1040ba337c44SJed Brown { 1041ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1042ba337c44SJed Brown PetscErrorCode ierr; 1043ba337c44SJed Brown 1044ba337c44SJed Brown PetscFunctionBegin; 1045ba337c44SJed Brown ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 1046ba337c44SJed Brown PetscFunctionReturn(0); 1047ba337c44SJed Brown } 1048ba337c44SJed Brown 1049*49a6ff4bSBarry Smith static PetscErrorCode MatGetColumnVector_MPIDense(Mat A,Vec v,PetscInt col) 1050*49a6ff4bSBarry Smith { 1051*49a6ff4bSBarry Smith PetscErrorCode ierr; 1052*49a6ff4bSBarry Smith PetscScalar *x; 1053*49a6ff4bSBarry Smith const PetscScalar *a; 1054*49a6ff4bSBarry Smith PetscInt lda; 1055*49a6ff4bSBarry Smith 1056*49a6ff4bSBarry Smith PetscFunctionBegin; 1057*49a6ff4bSBarry Smith if (A->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 1058*49a6ff4bSBarry Smith ierr = MatDenseGetLDA(A,&lda);CHKERRQ(ierr); 1059*49a6ff4bSBarry Smith ierr = MatDenseGetArrayRead(A,&a);CHKERRQ(ierr); 1060*49a6ff4bSBarry Smith ierr = VecGetArray(v,&x);CHKERRQ(ierr); 1061*49a6ff4bSBarry Smith ierr = PetscMemcpy(x,a+col*lda,A->rmap->n*sizeof(PetscScalar));CHKERRQ(ierr); 1062*49a6ff4bSBarry Smith ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 1063*49a6ff4bSBarry Smith ierr = MatDenseGetArrayRead(A,&a);CHKERRQ(ierr); 1064*49a6ff4bSBarry Smith PetscFunctionReturn(0); 1065*49a6ff4bSBarry Smith } 1066*49a6ff4bSBarry Smith 10670716a85fSBarry Smith extern PetscErrorCode MatGetColumnNorms_SeqDense(Mat,NormType,PetscReal*); 10680716a85fSBarry Smith PetscErrorCode MatGetColumnNorms_MPIDense(Mat A,NormType type,PetscReal *norms) 10690716a85fSBarry Smith { 10700716a85fSBarry Smith PetscErrorCode ierr; 10710716a85fSBarry Smith PetscInt i,n; 10720716a85fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*) A->data; 10730716a85fSBarry Smith PetscReal *work; 10740716a85fSBarry Smith 10750716a85fSBarry Smith PetscFunctionBegin; 10760298fd71SBarry Smith ierr = MatGetSize(A,NULL,&n);CHKERRQ(ierr); 1077785e854fSJed Brown ierr = PetscMalloc1(n,&work);CHKERRQ(ierr); 10780716a85fSBarry Smith ierr = MatGetColumnNorms_SeqDense(a->A,type,work);CHKERRQ(ierr); 10790716a85fSBarry Smith if (type == NORM_2) { 10800716a85fSBarry Smith for (i=0; i<n; i++) work[i] *= work[i]; 10810716a85fSBarry Smith } 10820716a85fSBarry Smith if (type == NORM_INFINITY) { 1083b2566f29SBarry Smith ierr = MPIU_Allreduce(work,norms,n,MPIU_REAL,MPIU_MAX,A->hdr.comm);CHKERRQ(ierr); 10840716a85fSBarry Smith } else { 1085b2566f29SBarry Smith ierr = MPIU_Allreduce(work,norms,n,MPIU_REAL,MPIU_SUM,A->hdr.comm);CHKERRQ(ierr); 10860716a85fSBarry Smith } 10870716a85fSBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 10880716a85fSBarry Smith if (type == NORM_2) { 10898f1a2a5eSBarry Smith for (i=0; i<n; i++) norms[i] = PetscSqrtReal(norms[i]); 10900716a85fSBarry Smith } 10910716a85fSBarry Smith PetscFunctionReturn(0); 10920716a85fSBarry Smith } 10930716a85fSBarry Smith 109473a71a0fSBarry Smith static PetscErrorCode MatSetRandom_MPIDense(Mat x,PetscRandom rctx) 109573a71a0fSBarry Smith { 109673a71a0fSBarry Smith Mat_MPIDense *d = (Mat_MPIDense*)x->data; 109773a71a0fSBarry Smith PetscErrorCode ierr; 109873a71a0fSBarry Smith PetscScalar *a; 109973a71a0fSBarry Smith PetscInt m,n,i; 110073a71a0fSBarry Smith 110173a71a0fSBarry Smith PetscFunctionBegin; 110273a71a0fSBarry Smith ierr = MatGetSize(d->A,&m,&n);CHKERRQ(ierr); 11038c778c55SBarry Smith ierr = MatDenseGetArray(d->A,&a);CHKERRQ(ierr); 110473a71a0fSBarry Smith for (i=0; i<m*n; i++) { 110573a71a0fSBarry Smith ierr = PetscRandomGetValue(rctx,a+i);CHKERRQ(ierr); 110673a71a0fSBarry Smith } 11078c778c55SBarry Smith ierr = MatDenseRestoreArray(d->A,&a);CHKERRQ(ierr); 110873a71a0fSBarry Smith PetscFunctionReturn(0); 110973a71a0fSBarry Smith } 111073a71a0fSBarry Smith 1111fd4e9aacSBarry Smith extern PetscErrorCode MatMatMultNumeric_MPIDense(Mat A,Mat,Mat); 1112fd4e9aacSBarry Smith 11133b49f96aSBarry Smith static PetscErrorCode MatMissingDiagonal_MPIDense(Mat A,PetscBool *missing,PetscInt *d) 11143b49f96aSBarry Smith { 11153b49f96aSBarry Smith PetscFunctionBegin; 11163b49f96aSBarry Smith *missing = PETSC_FALSE; 11173b49f96aSBarry Smith PetscFunctionReturn(0); 11183b49f96aSBarry Smith } 11193b49f96aSBarry Smith 1120cc48ffa7SToby Isaac static PetscErrorCode MatMatTransposeMult_MPIDense_MPIDense(Mat,Mat,MatReuse,PetscReal,Mat*); 1121cc48ffa7SToby Isaac static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat,Mat,PetscReal,Mat*); 1122cc48ffa7SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat,Mat,Mat); 1123cc48ffa7SToby Isaac 11248965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/ 112509dc0095SBarry Smith static struct _MatOps MatOps_Values = { MatSetValues_MPIDense, 112609dc0095SBarry Smith MatGetRow_MPIDense, 112709dc0095SBarry Smith MatRestoreRow_MPIDense, 112809dc0095SBarry Smith MatMult_MPIDense, 112997304618SKris Buschelman /* 4*/ MatMultAdd_MPIDense, 11307c922b88SBarry Smith MatMultTranspose_MPIDense, 11317c922b88SBarry Smith MatMultTransposeAdd_MPIDense, 11328965ea79SLois Curfman McInnes 0, 113309dc0095SBarry Smith 0, 113409dc0095SBarry Smith 0, 113597304618SKris Buschelman /* 10*/ 0, 113609dc0095SBarry Smith 0, 113709dc0095SBarry Smith 0, 113809dc0095SBarry Smith 0, 113909dc0095SBarry Smith MatTranspose_MPIDense, 114097304618SKris Buschelman /* 15*/ MatGetInfo_MPIDense, 11416e4ee0c6SHong Zhang MatEqual_MPIDense, 114209dc0095SBarry Smith MatGetDiagonal_MPIDense, 11435b2fa520SLois Curfman McInnes MatDiagonalScale_MPIDense, 114409dc0095SBarry Smith MatNorm_MPIDense, 114597304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPIDense, 114609dc0095SBarry Smith MatAssemblyEnd_MPIDense, 114709dc0095SBarry Smith MatSetOption_MPIDense, 114809dc0095SBarry Smith MatZeroEntries_MPIDense, 1149d519adbfSMatthew Knepley /* 24*/ MatZeroRows_MPIDense, 1150919b68f7SBarry Smith 0, 115101b82886SBarry Smith 0, 115201b82886SBarry Smith 0, 115301b82886SBarry Smith 0, 11544994cf47SJed Brown /* 29*/ MatSetUp_MPIDense, 1155273d9f13SBarry Smith 0, 115609dc0095SBarry Smith 0, 1157c56a70eeSBarry Smith MatGetDiagonalBlock_MPIDense, 11588c778c55SBarry Smith 0, 1159d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPIDense, 116009dc0095SBarry Smith 0, 116109dc0095SBarry Smith 0, 116209dc0095SBarry Smith 0, 116309dc0095SBarry Smith 0, 1164d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPIDense, 11657dae84e0SHong Zhang MatCreateSubMatrices_MPIDense, 116609dc0095SBarry Smith 0, 116709dc0095SBarry Smith MatGetValues_MPIDense, 116809dc0095SBarry Smith 0, 1169d519adbfSMatthew Knepley /* 44*/ 0, 117009dc0095SBarry Smith MatScale_MPIDense, 11717d68702bSBarry Smith MatShift_Basic, 117209dc0095SBarry Smith 0, 117309dc0095SBarry Smith 0, 117473a71a0fSBarry Smith /* 49*/ MatSetRandom_MPIDense, 117509dc0095SBarry Smith 0, 117609dc0095SBarry Smith 0, 117709dc0095SBarry Smith 0, 117809dc0095SBarry Smith 0, 1179d519adbfSMatthew Knepley /* 54*/ 0, 118009dc0095SBarry Smith 0, 118109dc0095SBarry Smith 0, 118209dc0095SBarry Smith 0, 118309dc0095SBarry Smith 0, 11847dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPIDense, 1185b9b97703SBarry Smith MatDestroy_MPIDense, 1186b9b97703SBarry Smith MatView_MPIDense, 1187357abbc8SBarry Smith 0, 118897304618SKris Buschelman 0, 1189d519adbfSMatthew Knepley /* 64*/ 0, 119097304618SKris Buschelman 0, 119197304618SKris Buschelman 0, 119297304618SKris Buschelman 0, 119397304618SKris Buschelman 0, 1194d519adbfSMatthew Knepley /* 69*/ 0, 119597304618SKris Buschelman 0, 119697304618SKris Buschelman 0, 119797304618SKris Buschelman 0, 119897304618SKris Buschelman 0, 1199d519adbfSMatthew Knepley /* 74*/ 0, 120097304618SKris Buschelman 0, 120197304618SKris Buschelman 0, 120297304618SKris Buschelman 0, 120397304618SKris Buschelman 0, 1204d519adbfSMatthew Knepley /* 79*/ 0, 120597304618SKris Buschelman 0, 120697304618SKris Buschelman 0, 120797304618SKris Buschelman 0, 12085bba2384SShri Abhyankar /* 83*/ MatLoad_MPIDense, 1209865e5f61SKris Buschelman 0, 1210865e5f61SKris Buschelman 0, 1211865e5f61SKris Buschelman 0, 1212865e5f61SKris Buschelman 0, 1213865e5f61SKris Buschelman 0, 12149775878aSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 1215320f2790SHong Zhang /* 89*/ MatMatMult_MPIDense_MPIDense, 1216320f2790SHong Zhang MatMatMultSymbolic_MPIDense_MPIDense, 12179775878aSHong Zhang #else 12189775878aSHong Zhang /* 89*/ 0, 1219865e5f61SKris Buschelman 0, 12209775878aSHong Zhang #endif 1221fd4e9aacSBarry Smith MatMatMultNumeric_MPIDense, 12222fbe02b9SBarry Smith 0, 1223ba337c44SJed Brown 0, 1224d519adbfSMatthew Knepley /* 94*/ 0, 1225cc48ffa7SToby Isaac MatMatTransposeMult_MPIDense_MPIDense, 1226cc48ffa7SToby Isaac MatMatTransposeMultSymbolic_MPIDense_MPIDense, 1227cc48ffa7SToby Isaac MatMatTransposeMultNumeric_MPIDense_MPIDense, 1228ba337c44SJed Brown 0, 1229ba337c44SJed Brown /* 99*/ 0, 1230ba337c44SJed Brown 0, 1231ba337c44SJed Brown 0, 1232ba337c44SJed Brown MatConjugate_MPIDense, 1233ba337c44SJed Brown 0, 1234ba337c44SJed Brown /*104*/ 0, 1235ba337c44SJed Brown MatRealPart_MPIDense, 1236ba337c44SJed Brown MatImaginaryPart_MPIDense, 123786d161a7SShri Abhyankar 0, 123886d161a7SShri Abhyankar 0, 123986d161a7SShri Abhyankar /*109*/ 0, 124086d161a7SShri Abhyankar 0, 124186d161a7SShri Abhyankar 0, 1242*49a6ff4bSBarry Smith MatGetColumnVector_MPIDense, 12433b49f96aSBarry Smith MatMissingDiagonal_MPIDense, 124486d161a7SShri Abhyankar /*114*/ 0, 124586d161a7SShri Abhyankar 0, 124686d161a7SShri Abhyankar 0, 124786d161a7SShri Abhyankar 0, 124886d161a7SShri Abhyankar 0, 124986d161a7SShri Abhyankar /*119*/ 0, 125086d161a7SShri Abhyankar 0, 125186d161a7SShri Abhyankar 0, 12520716a85fSBarry Smith 0, 12530716a85fSBarry Smith 0, 12540716a85fSBarry Smith /*124*/ 0, 12553964eb88SJed Brown MatGetColumnNorms_MPIDense, 12563964eb88SJed Brown 0, 12573964eb88SJed Brown 0, 12583964eb88SJed Brown 0, 12593964eb88SJed Brown /*129*/ 0, 1260cb20be35SHong Zhang MatTransposeMatMult_MPIDense_MPIDense, 1261cb20be35SHong Zhang MatTransposeMatMultSymbolic_MPIDense_MPIDense, 1262cb20be35SHong Zhang MatTransposeMatMultNumeric_MPIDense_MPIDense, 12633964eb88SJed Brown 0, 12643964eb88SJed Brown /*134*/ 0, 12653964eb88SJed Brown 0, 12663964eb88SJed Brown 0, 12673964eb88SJed Brown 0, 12683964eb88SJed Brown 0, 12693964eb88SJed Brown /*139*/ 0, 1270f9426fe0SMark Adams 0, 127194e2cb23SJakub Kruzik 0, 127294e2cb23SJakub Kruzik 0, 127394e2cb23SJakub Kruzik 0, 12741ae5eee8SJakub Kruzik /*144*/ MatCreateMPIMatConcatenateSeqMat_MPIDense 1275ba337c44SJed Brown }; 12768965ea79SLois Curfman McInnes 12777087cfbeSBarry Smith PetscErrorCode MatMPIDenseSetPreallocation_MPIDense(Mat mat,PetscScalar *data) 1278a23d5eceSKris Buschelman { 1279a23d5eceSKris Buschelman Mat_MPIDense *a; 1280dfbe8321SBarry Smith PetscErrorCode ierr; 1281a23d5eceSKris Buschelman 1282a23d5eceSKris Buschelman PetscFunctionBegin; 1283430ada49SBarry Smith if (mat->preallocated) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ARG_WRONGSTATE,"Matrix has already been preallocated"); 1284a23d5eceSKris Buschelman mat->preallocated = PETSC_TRUE; 1285a23d5eceSKris Buschelman /* Note: For now, when data is specified above, this assumes the user correctly 1286a23d5eceSKris Buschelman allocates the local dense storage space. We should add error checking. */ 1287a23d5eceSKris Buschelman 1288a23d5eceSKris Buschelman a = (Mat_MPIDense*)mat->data; 128934ef9618SShri Abhyankar ierr = PetscLayoutSetUp(mat->rmap);CHKERRQ(ierr); 129034ef9618SShri Abhyankar ierr = PetscLayoutSetUp(mat->cmap);CHKERRQ(ierr); 129134ef9618SShri Abhyankar a->nvec = mat->cmap->n; 129234ef9618SShri Abhyankar 1293f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&a->A);CHKERRQ(ierr); 1294d0f46423SBarry Smith ierr = MatSetSizes(a->A,mat->rmap->n,mat->cmap->N,mat->rmap->n,mat->cmap->N);CHKERRQ(ierr); 12955c5985e7SKris Buschelman ierr = MatSetType(a->A,MATSEQDENSE);CHKERRQ(ierr); 12965c5985e7SKris Buschelman ierr = MatSeqDenseSetPreallocation(a->A,data);CHKERRQ(ierr); 12973bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 1298a23d5eceSKris Buschelman PetscFunctionReturn(0); 1299a23d5eceSKris Buschelman } 1300a23d5eceSKris Buschelman 130165b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 1302cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIDense_Elemental(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 13038baccfbdSHong Zhang { 13048ea901baSHong Zhang Mat mat_elemental; 13058ea901baSHong Zhang PetscErrorCode ierr; 130632d7a744SHong Zhang PetscScalar *v; 130732d7a744SHong Zhang PetscInt m=A->rmap->n,N=A->cmap->N,rstart=A->rmap->rstart,i,*rows,*cols; 13088ea901baSHong Zhang 13098baccfbdSHong Zhang PetscFunctionBegin; 1310378336b6SHong Zhang if (reuse == MAT_REUSE_MATRIX) { 1311378336b6SHong Zhang mat_elemental = *newmat; 1312378336b6SHong Zhang ierr = MatZeroEntries(*newmat);CHKERRQ(ierr); 1313378336b6SHong Zhang } else { 1314378336b6SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental);CHKERRQ(ierr); 1315378336b6SHong Zhang ierr = MatSetSizes(mat_elemental,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 1316378336b6SHong Zhang ierr = MatSetType(mat_elemental,MATELEMENTAL);CHKERRQ(ierr); 1317378336b6SHong Zhang ierr = MatSetUp(mat_elemental);CHKERRQ(ierr); 131832d7a744SHong Zhang ierr = MatSetOption(mat_elemental,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 1319378336b6SHong Zhang } 1320378336b6SHong Zhang 132132d7a744SHong Zhang ierr = PetscMalloc2(m,&rows,N,&cols);CHKERRQ(ierr); 132232d7a744SHong Zhang for (i=0; i<N; i++) cols[i] = i; 132332d7a744SHong Zhang for (i=0; i<m; i++) rows[i] = rstart + i; 13248ea901baSHong Zhang 13258ea901baSHong Zhang /* PETSc-Elemental interaface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */ 132632d7a744SHong Zhang ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr); 132732d7a744SHong Zhang ierr = MatSetValues(mat_elemental,m,rows,N,cols,v,ADD_VALUES);CHKERRQ(ierr); 13288ea901baSHong Zhang ierr = MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 13298ea901baSHong Zhang ierr = MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 133032d7a744SHong Zhang ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr); 133132d7a744SHong Zhang ierr = PetscFree2(rows,cols);CHKERRQ(ierr); 13328ea901baSHong Zhang 1333511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 133428be2f97SBarry Smith ierr = MatHeaderReplace(A,&mat_elemental);CHKERRQ(ierr); 13358ea901baSHong Zhang } else { 13368ea901baSHong Zhang *newmat = mat_elemental; 13378ea901baSHong Zhang } 13388baccfbdSHong Zhang PetscFunctionReturn(0); 13398baccfbdSHong Zhang } 134065b80a83SHong Zhang #endif 13418baccfbdSHong Zhang 1342af53bab2SHong Zhang static PetscErrorCode MatDenseGetColumn_MPIDense(Mat A,PetscInt col,PetscScalar **vals) 134386aefd0dSHong Zhang { 134486aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 134586aefd0dSHong Zhang PetscErrorCode ierr; 134686aefd0dSHong Zhang 134786aefd0dSHong Zhang PetscFunctionBegin; 134886aefd0dSHong Zhang ierr = MatDenseGetColumn(mat->A,col,vals);CHKERRQ(ierr); 134986aefd0dSHong Zhang PetscFunctionReturn(0); 135086aefd0dSHong Zhang } 135186aefd0dSHong Zhang 1352af53bab2SHong Zhang static PetscErrorCode MatDenseRestoreColumn_MPIDense(Mat A,PetscScalar **vals) 135386aefd0dSHong Zhang { 135486aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 135586aefd0dSHong Zhang PetscErrorCode ierr; 135686aefd0dSHong Zhang 135786aefd0dSHong Zhang PetscFunctionBegin; 135886aefd0dSHong Zhang ierr = MatDenseRestoreColumn(mat->A,vals);CHKERRQ(ierr); 135986aefd0dSHong Zhang PetscFunctionReturn(0); 136086aefd0dSHong Zhang } 136186aefd0dSHong Zhang 136294e2cb23SJakub Kruzik PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIDense(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 136394e2cb23SJakub Kruzik { 136494e2cb23SJakub Kruzik PetscErrorCode ierr; 136594e2cb23SJakub Kruzik Mat_MPIDense *mat; 136694e2cb23SJakub Kruzik PetscInt m,nloc,N; 136794e2cb23SJakub Kruzik 136894e2cb23SJakub Kruzik PetscFunctionBegin; 136994e2cb23SJakub Kruzik ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr); 137094e2cb23SJakub Kruzik ierr = MatGetLocalSize(inmat,NULL,&nloc);CHKERRQ(ierr); 137194e2cb23SJakub Kruzik if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 137294e2cb23SJakub Kruzik PetscInt sum; 137394e2cb23SJakub Kruzik 137494e2cb23SJakub Kruzik if (n == PETSC_DECIDE) { 137594e2cb23SJakub Kruzik ierr = PetscSplitOwnership(comm,&n,&N);CHKERRQ(ierr); 137694e2cb23SJakub Kruzik } 137794e2cb23SJakub Kruzik /* Check sum(n) = N */ 137894e2cb23SJakub Kruzik ierr = MPIU_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 137994e2cb23SJakub Kruzik if (sum != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns %D != global columns %D",sum,N); 138094e2cb23SJakub Kruzik 138194e2cb23SJakub Kruzik ierr = MatCreateDense(comm,m,n,PETSC_DETERMINE,N,NULL,outmat);CHKERRQ(ierr); 138294e2cb23SJakub Kruzik } 138394e2cb23SJakub Kruzik 138494e2cb23SJakub Kruzik /* numeric phase */ 138594e2cb23SJakub Kruzik mat = (Mat_MPIDense*)(*outmat)->data; 138694e2cb23SJakub Kruzik ierr = MatCopy(inmat,mat->A,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 138794e2cb23SJakub Kruzik ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 138894e2cb23SJakub Kruzik ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 138994e2cb23SJakub Kruzik PetscFunctionReturn(0); 139094e2cb23SJakub Kruzik } 139194e2cb23SJakub Kruzik 13928cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIDense(Mat mat) 1393273d9f13SBarry Smith { 1394273d9f13SBarry Smith Mat_MPIDense *a; 1395dfbe8321SBarry Smith PetscErrorCode ierr; 1396273d9f13SBarry Smith 1397273d9f13SBarry Smith PetscFunctionBegin; 1398b00a9115SJed Brown ierr = PetscNewLog(mat,&a);CHKERRQ(ierr); 1399b0a32e0cSBarry Smith mat->data = (void*)a; 1400273d9f13SBarry Smith ierr = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1401273d9f13SBarry Smith 1402273d9f13SBarry Smith mat->insertmode = NOT_SET_VALUES; 1403ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&a->rank);CHKERRQ(ierr); 1404ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&a->size);CHKERRQ(ierr); 1405273d9f13SBarry Smith 1406273d9f13SBarry Smith /* build cache for off array entries formed */ 1407273d9f13SBarry Smith a->donotstash = PETSC_FALSE; 14082205254eSKarl Rupp 1409ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)mat),1,&mat->stash);CHKERRQ(ierr); 1410273d9f13SBarry Smith 1411273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 1412273d9f13SBarry Smith a->lvec = 0; 1413273d9f13SBarry Smith a->Mvctx = 0; 1414273d9f13SBarry Smith a->roworiented = PETSC_TRUE; 1415273d9f13SBarry Smith 1416*49a6ff4bSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",MatDenseGetLDA_MPIDense);CHKERRQ(ierr); 1417bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",MatDenseGetArray_MPIDense);CHKERRQ(ierr); 14188572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",MatDenseRestoreArray_MPIDense);CHKERRQ(ierr); 14198572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",MatDenseGetArrayRead_MPIDense);CHKERRQ(ierr); 14208572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",MatDenseRestoreArrayRead_MPIDense);CHKERRQ(ierr); 1421d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",MatDensePlaceArray_MPIDense);CHKERRQ(ierr); 1422d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",MatDenseResetArray_MPIDense);CHKERRQ(ierr); 14238baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 14248baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",MatConvert_MPIDense_Elemental);CHKERRQ(ierr); 14258baccfbdSHong Zhang #endif 1426bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",MatMPIDenseSetPreallocation_MPIDense);CHKERRQ(ierr); 1427bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMult_mpiaij_mpidense_C",MatMatMult_MPIAIJ_MPIDense);CHKERRQ(ierr); 1428bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C",MatMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr); 1429bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C",MatMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr); 14308949adfdSHong Zhang 14318949adfdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMult_mpiaij_mpidense_C",MatTransposeMatMult_MPIAIJ_MPIDense);CHKERRQ(ierr); 14328949adfdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultSymbolic_mpiaij_mpidense_C",MatTransposeMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr); 14338949adfdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultNumeric_mpiaij_mpidense_C",MatTransposeMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr); 1434af53bab2SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",MatDenseGetColumn_MPIDense);CHKERRQ(ierr); 1435af53bab2SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",MatDenseRestoreColumn_MPIDense);CHKERRQ(ierr); 143638aed534SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)mat,MATMPIDENSE);CHKERRQ(ierr); 1437273d9f13SBarry Smith PetscFunctionReturn(0); 1438273d9f13SBarry Smith } 1439273d9f13SBarry Smith 1440209238afSKris Buschelman /*MC 1441002d173eSKris Buschelman MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices. 1442209238afSKris Buschelman 1443209238afSKris Buschelman This matrix type is identical to MATSEQDENSE when constructed with a single process communicator, 1444209238afSKris Buschelman and MATMPIDENSE otherwise. 1445209238afSKris Buschelman 1446209238afSKris Buschelman Options Database Keys: 1447209238afSKris Buschelman . -mat_type dense - sets the matrix type to "dense" during a call to MatSetFromOptions() 1448209238afSKris Buschelman 1449209238afSKris Buschelman Level: beginner 1450209238afSKris Buschelman 145101b82886SBarry Smith 1452209238afSKris Buschelman .seealso: MatCreateMPIDense,MATSEQDENSE,MATMPIDENSE 1453209238afSKris Buschelman M*/ 1454209238afSKris Buschelman 1455273d9f13SBarry Smith /*@C 1456273d9f13SBarry Smith MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries 1457273d9f13SBarry Smith 1458273d9f13SBarry Smith Not collective 1459273d9f13SBarry Smith 1460273d9f13SBarry Smith Input Parameters: 14611c4f3114SJed Brown . B - the matrix 14620298fd71SBarry Smith - data - optional location of matrix data. Set data=NULL for PETSc 1463273d9f13SBarry Smith to control all matrix memory allocation. 1464273d9f13SBarry Smith 1465273d9f13SBarry Smith Notes: 1466273d9f13SBarry Smith The dense format is fully compatible with standard Fortran 77 1467273d9f13SBarry Smith storage by columns. 1468273d9f13SBarry Smith 1469273d9f13SBarry Smith The data input variable is intended primarily for Fortran programmers 1470273d9f13SBarry Smith who wish to allocate their own matrix memory space. Most users should 14710298fd71SBarry Smith set data=NULL. 1472273d9f13SBarry Smith 1473273d9f13SBarry Smith Level: intermediate 1474273d9f13SBarry Smith 1475273d9f13SBarry Smith .keywords: matrix,dense, parallel 1476273d9f13SBarry Smith 1477273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 1478273d9f13SBarry Smith @*/ 14791c4f3114SJed Brown PetscErrorCode MatMPIDenseSetPreallocation(Mat B,PetscScalar *data) 1480273d9f13SBarry Smith { 14814ac538c5SBarry Smith PetscErrorCode ierr; 1482273d9f13SBarry Smith 1483273d9f13SBarry Smith PetscFunctionBegin; 14841c4f3114SJed Brown ierr = PetscTryMethod(B,"MatMPIDenseSetPreallocation_C",(Mat,PetscScalar*),(B,data));CHKERRQ(ierr); 1485273d9f13SBarry Smith PetscFunctionReturn(0); 1486273d9f13SBarry Smith } 1487273d9f13SBarry Smith 1488d3042a70SBarry Smith /*@ 1489d3042a70SBarry Smith MatDensePlaceArray - Allows one to replace the array in a dense array with an 1490d3042a70SBarry Smith array provided by the user. This is useful to avoid copying an array 1491d3042a70SBarry Smith into a matrix 1492d3042a70SBarry Smith 1493d3042a70SBarry Smith Not Collective 1494d3042a70SBarry Smith 1495d3042a70SBarry Smith Input Parameters: 1496d3042a70SBarry Smith + mat - the matrix 1497d3042a70SBarry Smith - array - the array in column major order 1498d3042a70SBarry Smith 1499d3042a70SBarry Smith Notes: 1500d3042a70SBarry Smith You can return to the original array with a call to MatDenseResetArray(). The user is responsible for freeing this array; it will not be 1501d3042a70SBarry Smith freed when the matrix is destroyed. 1502d3042a70SBarry Smith 1503d3042a70SBarry Smith Level: developer 1504d3042a70SBarry Smith 1505d3042a70SBarry Smith .seealso: MatDenseGetArray(), MatDenseResetArray(), VecPlaceArray(), VecGetArray(), VecRestoreArray(), VecReplaceArray(), VecResetArray() 1506d3042a70SBarry Smith 1507d3042a70SBarry Smith @*/ 1508d3042a70SBarry Smith PetscErrorCode MatDensePlaceArray(Mat mat,const PetscScalar array[]) 1509d3042a70SBarry Smith { 1510d3042a70SBarry Smith PetscErrorCode ierr; 1511d3042a70SBarry Smith PetscFunctionBegin; 1512d3042a70SBarry Smith ierr = PetscUseMethod(mat,"MatDensePlaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr); 1513d3042a70SBarry Smith ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 1514d3042a70SBarry Smith PetscFunctionReturn(0); 1515d3042a70SBarry Smith } 1516d3042a70SBarry Smith 1517d3042a70SBarry Smith /*@ 1518d3042a70SBarry Smith MatDenseResetArray - Resets the matrix array to that it previously had before the call to MatDensePlaceArray() 1519d3042a70SBarry Smith 1520d3042a70SBarry Smith Not Collective 1521d3042a70SBarry Smith 1522d3042a70SBarry Smith Input Parameters: 1523d3042a70SBarry Smith . mat - the matrix 1524d3042a70SBarry Smith 1525d3042a70SBarry Smith Notes: 1526d3042a70SBarry Smith You can only call this after a call to MatDensePlaceArray() 1527d3042a70SBarry Smith 1528d3042a70SBarry Smith Level: developer 1529d3042a70SBarry Smith 1530d3042a70SBarry Smith .seealso: MatDenseGetArray(), MatDensePlaceArray(), VecPlaceArray(), VecGetArray(), VecRestoreArray(), VecReplaceArray(), VecResetArray() 1531d3042a70SBarry Smith 1532d3042a70SBarry Smith @*/ 1533d3042a70SBarry Smith PetscErrorCode MatDenseResetArray(Mat mat) 1534d3042a70SBarry Smith { 1535d3042a70SBarry Smith PetscErrorCode ierr; 1536d3042a70SBarry Smith PetscFunctionBegin; 1537d3042a70SBarry Smith ierr = PetscUseMethod(mat,"MatDenseResetArray_C",(Mat),(mat));CHKERRQ(ierr); 1538d3042a70SBarry Smith ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 1539d3042a70SBarry Smith PetscFunctionReturn(0); 1540d3042a70SBarry Smith } 1541d3042a70SBarry Smith 15428965ea79SLois Curfman McInnes /*@C 154369b1f4b7SBarry Smith MatCreateDense - Creates a parallel matrix in dense format. 15448965ea79SLois Curfman McInnes 1545db81eaa0SLois Curfman McInnes Collective on MPI_Comm 1546db81eaa0SLois Curfman McInnes 15478965ea79SLois Curfman McInnes Input Parameters: 1548db81eaa0SLois Curfman McInnes + comm - MPI communicator 15498965ea79SLois Curfman McInnes . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1550db81eaa0SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 15518965ea79SLois Curfman McInnes . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 1552db81eaa0SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 15536cfe35ddSJose E. Roman - data - optional location of matrix data. Set data=NULL (PETSC_NULL_SCALAR for Fortran users) for PETSc 1554dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 15558965ea79SLois Curfman McInnes 15568965ea79SLois Curfman McInnes Output Parameter: 1557477f1c0bSLois Curfman McInnes . A - the matrix 15588965ea79SLois Curfman McInnes 1559b259b22eSLois Curfman McInnes Notes: 156039ddd567SLois Curfman McInnes The dense format is fully compatible with standard Fortran 77 156139ddd567SLois Curfman McInnes storage by columns. 15628965ea79SLois Curfman McInnes 156318f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 156418f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 15656cfe35ddSJose E. Roman set data=NULL (PETSC_NULL_SCALAR for Fortran users). 156618f449edSLois Curfman McInnes 15678965ea79SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 15688965ea79SLois Curfman McInnes (possibly both). 15698965ea79SLois Curfman McInnes 1570027ccd11SLois Curfman McInnes Level: intermediate 1571027ccd11SLois Curfman McInnes 157239ddd567SLois Curfman McInnes .keywords: matrix,dense, parallel 15738965ea79SLois Curfman McInnes 157439ddd567SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 15758965ea79SLois Curfman McInnes @*/ 157669b1f4b7SBarry Smith PetscErrorCode MatCreateDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 15778965ea79SLois Curfman McInnes { 15786849ba73SBarry Smith PetscErrorCode ierr; 157913f74950SBarry Smith PetscMPIInt size; 15808965ea79SLois Curfman McInnes 15813a40ed3dSBarry Smith PetscFunctionBegin; 1582f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 1583f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 1584273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1585273d9f13SBarry Smith if (size > 1) { 1586273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIDENSE);CHKERRQ(ierr); 1587273d9f13SBarry Smith ierr = MatMPIDenseSetPreallocation(*A,data);CHKERRQ(ierr); 15886cfe35ddSJose E. Roman if (data) { /* user provided data array, so no need to assemble */ 15896cfe35ddSJose E. Roman ierr = MatSetUpMultiply_MPIDense(*A);CHKERRQ(ierr); 15906cfe35ddSJose E. Roman (*A)->assembled = PETSC_TRUE; 15916cfe35ddSJose E. Roman } 1592273d9f13SBarry Smith } else { 1593273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr); 1594273d9f13SBarry Smith ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr); 15958c469469SLois Curfman McInnes } 15963a40ed3dSBarry Smith PetscFunctionReturn(0); 15978965ea79SLois Curfman McInnes } 15988965ea79SLois Curfman McInnes 15996849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat) 16008965ea79SLois Curfman McInnes { 16018965ea79SLois Curfman McInnes Mat mat; 16023501a2bdSLois Curfman McInnes Mat_MPIDense *a,*oldmat = (Mat_MPIDense*)A->data; 1603dfbe8321SBarry Smith PetscErrorCode ierr; 16048965ea79SLois Curfman McInnes 16053a40ed3dSBarry Smith PetscFunctionBegin; 16068965ea79SLois Curfman McInnes *newmat = 0; 1607ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&mat);CHKERRQ(ierr); 1608d0f46423SBarry Smith ierr = MatSetSizes(mat,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 16097adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)A)->type_name);CHKERRQ(ierr); 1610834f8fabSBarry Smith a = (Mat_MPIDense*)mat->data; 16115aa7edbeSHong Zhang 1612d5f3da31SBarry Smith mat->factortype = A->factortype; 1613c456f294SBarry Smith mat->assembled = PETSC_TRUE; 1614273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 16158965ea79SLois Curfman McInnes 16168965ea79SLois Curfman McInnes a->size = oldmat->size; 16178965ea79SLois Curfman McInnes a->rank = oldmat->rank; 1618e0fa3b82SLois Curfman McInnes mat->insertmode = NOT_SET_VALUES; 1619b9b97703SBarry Smith a->nvec = oldmat->nvec; 16203782ba37SSatish Balay a->donotstash = oldmat->donotstash; 1621e04c1aa4SHong Zhang 16221e1e43feSBarry Smith ierr = PetscLayoutReference(A->rmap,&mat->rmap);CHKERRQ(ierr); 16231e1e43feSBarry Smith ierr = PetscLayoutReference(A->cmap,&mat->cmap);CHKERRQ(ierr); 16248965ea79SLois Curfman McInnes 1625329f5518SBarry Smith ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 16265609ef8eSBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 16273bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 162801b82886SBarry Smith 16298965ea79SLois Curfman McInnes *newmat = mat; 16303a40ed3dSBarry Smith PetscFunctionReturn(0); 16318965ea79SLois Curfman McInnes } 16328965ea79SLois Curfman McInnes 16339d36ed5fSBarry Smith PetscErrorCode MatLoad_MPIDense_DenseInFile(MPI_Comm comm,PetscInt fd,PetscInt M,PetscInt N,Mat newmat) 163486d161a7SShri Abhyankar { 163586d161a7SShri Abhyankar PetscErrorCode ierr; 163686d161a7SShri Abhyankar PetscMPIInt rank,size; 163774c13d95SBarry Smith const PetscInt *rowners; 163874c13d95SBarry Smith PetscInt i,m,n,nz,j,mMax; 163986d161a7SShri Abhyankar PetscScalar *array,*vals,*vals_ptr; 16409d36ed5fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)newmat->data; 164186d161a7SShri Abhyankar 164286d161a7SShri Abhyankar PetscFunctionBegin; 164386d161a7SShri Abhyankar ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 164486d161a7SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 164586d161a7SShri Abhyankar 164674c13d95SBarry Smith /* determine ownership of rows and columns */ 164774c13d95SBarry Smith m = (newmat->rmap->n < 0) ? PETSC_DECIDE : newmat->rmap->n; 164874c13d95SBarry Smith n = (newmat->cmap->n < 0) ? PETSC_DECIDE : newmat->cmap->n; 164986d161a7SShri Abhyankar 165074c13d95SBarry Smith ierr = MatSetSizes(newmat,m,n,M,N);CHKERRQ(ierr); 1651430ada49SBarry Smith if (!a->A) { 16520298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr); 16539d36ed5fSBarry Smith } 16548c778c55SBarry Smith ierr = MatDenseGetArray(newmat,&array);CHKERRQ(ierr); 165549467e7dSBarry Smith ierr = MatGetLocalSize(newmat,&m,NULL);CHKERRQ(ierr); 165674c13d95SBarry Smith ierr = MatGetOwnershipRanges(newmat,&rowners);CHKERRQ(ierr); 1657396e826eSBarry Smith ierr = MPI_Reduce(&m,&mMax,1,MPIU_INT,MPI_MAX,0,comm);CHKERRQ(ierr); 165886d161a7SShri Abhyankar if (!rank) { 16599d36ed5fSBarry Smith ierr = PetscMalloc1(mMax*N,&vals);CHKERRQ(ierr); 166086d161a7SShri Abhyankar 166186d161a7SShri Abhyankar /* read in my part of the matrix numerical values */ 166286d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,vals,m*N,PETSC_SCALAR);CHKERRQ(ierr); 166386d161a7SShri Abhyankar 166486d161a7SShri Abhyankar /* insert into matrix-by row (this is why cannot directly read into array */ 166586d161a7SShri Abhyankar vals_ptr = vals; 166686d161a7SShri Abhyankar for (i=0; i<m; i++) { 166786d161a7SShri Abhyankar for (j=0; j<N; j++) { 166886d161a7SShri Abhyankar array[i + j*m] = *vals_ptr++; 166986d161a7SShri Abhyankar } 167086d161a7SShri Abhyankar } 167186d161a7SShri Abhyankar 167286d161a7SShri Abhyankar /* read in other processors and ship out */ 167386d161a7SShri Abhyankar for (i=1; i<size; i++) { 167486d161a7SShri Abhyankar nz = (rowners[i+1] - rowners[i])*N; 167586d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 1676a25532f0SBarry Smith ierr = MPIULong_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)(newmat))->tag,comm);CHKERRQ(ierr); 167786d161a7SShri Abhyankar } 167886d161a7SShri Abhyankar } else { 167986d161a7SShri Abhyankar /* receive numeric values */ 1680785e854fSJed Brown ierr = PetscMalloc1(m*N,&vals);CHKERRQ(ierr); 168186d161a7SShri Abhyankar 168286d161a7SShri Abhyankar /* receive message of values*/ 1683a25532f0SBarry Smith ierr = MPIULong_Recv(vals,m*N,MPIU_SCALAR,0,((PetscObject)(newmat))->tag,comm);CHKERRQ(ierr); 168486d161a7SShri Abhyankar 168586d161a7SShri Abhyankar /* insert into matrix-by row (this is why cannot directly read into array */ 168686d161a7SShri Abhyankar vals_ptr = vals; 168786d161a7SShri Abhyankar for (i=0; i<m; i++) { 168886d161a7SShri Abhyankar for (j=0; j<N; j++) { 168986d161a7SShri Abhyankar array[i + j*m] = *vals_ptr++; 169086d161a7SShri Abhyankar } 169186d161a7SShri Abhyankar } 169286d161a7SShri Abhyankar } 16938c778c55SBarry Smith ierr = MatDenseRestoreArray(newmat,&array);CHKERRQ(ierr); 169486d161a7SShri Abhyankar ierr = PetscFree(vals);CHKERRQ(ierr); 169586d161a7SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 169686d161a7SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 169786d161a7SShri Abhyankar PetscFunctionReturn(0); 169886d161a7SShri Abhyankar } 169986d161a7SShri Abhyankar 1700112444f4SShri Abhyankar PetscErrorCode MatLoad_MPIDense(Mat newmat,PetscViewer viewer) 170186d161a7SShri Abhyankar { 1702dfdea288SBarry Smith Mat_MPIDense *a; 170386d161a7SShri Abhyankar PetscScalar *vals,*svals; 1704ce94432eSBarry Smith MPI_Comm comm; 170586d161a7SShri Abhyankar MPI_Status status; 170649467e7dSBarry Smith PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*rowners,*sndcounts,m,n,maxnz; 170786d161a7SShri Abhyankar PetscInt header[4],*rowlengths = 0,M,N,*cols; 170849467e7dSBarry Smith PetscInt *ourlens,*procsnz = 0,jj,*mycols,*smycols; 17099d36ed5fSBarry Smith PetscInt i,nz,j,rstart,rend; 171086d161a7SShri Abhyankar int fd; 17117f489da9SVaclav Hapla PetscBool isbinary; 171286d161a7SShri Abhyankar PetscErrorCode ierr; 171386d161a7SShri Abhyankar 171486d161a7SShri Abhyankar PetscFunctionBegin; 17157f489da9SVaclav Hapla ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 17167f489da9SVaclav Hapla if (!isbinary) SETERRQ2(PetscObjectComm((PetscObject)newmat),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)newmat)->type_name); 17177f489da9SVaclav Hapla 1718c98fd787SBarry Smith /* force binary viewer to load .info file if it has not yet done so */ 1719c98fd787SBarry Smith ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr); 1720ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr); 172186d161a7SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 172286d161a7SShri Abhyankar ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 172386d161a7SShri Abhyankar ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 17245872f025SBarry Smith if (!rank) { 172586d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr); 172686d161a7SShri Abhyankar if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 172786d161a7SShri Abhyankar } 172886d161a7SShri Abhyankar ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 172986d161a7SShri Abhyankar M = header[1]; N = header[2]; nz = header[3]; 173086d161a7SShri Abhyankar 173186d161a7SShri Abhyankar /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */ 17329d36ed5fSBarry Smith if (newmat->rmap->N < 0) newmat->rmap->N = M; 17339d36ed5fSBarry Smith if (newmat->cmap->N < 0) newmat->cmap->N = N; 173486d161a7SShri Abhyankar 17359d36ed5fSBarry Smith if (newmat->rmap->N != M) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%D) and input matrix has (%D)",M,newmat->rmap->N); 17369d36ed5fSBarry Smith if (newmat->cmap->N != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%D) and input matrix has (%D)",N,newmat->cmap->N); 173786d161a7SShri Abhyankar 173886d161a7SShri Abhyankar /* 173986d161a7SShri Abhyankar Handle case where matrix is stored on disk as a dense matrix 174086d161a7SShri Abhyankar */ 174186d161a7SShri Abhyankar if (nz == MATRIX_BINARY_FORMAT_DENSE) { 17429d36ed5fSBarry Smith ierr = MatLoad_MPIDense_DenseInFile(comm,fd,M,N,newmat);CHKERRQ(ierr); 174386d161a7SShri Abhyankar PetscFunctionReturn(0); 174486d161a7SShri Abhyankar } 174586d161a7SShri Abhyankar 174686d161a7SShri Abhyankar /* determine ownership of all rows */ 17472205254eSKarl Rupp if (newmat->rmap->n < 0) { 17482205254eSKarl Rupp ierr = PetscMPIIntCast(M/size + ((M % size) > rank),&m);CHKERRQ(ierr); 17492205254eSKarl Rupp } else { 17502205254eSKarl Rupp ierr = PetscMPIIntCast(newmat->rmap->n,&m);CHKERRQ(ierr); 17512205254eSKarl Rupp } 175249467e7dSBarry Smith if (newmat->cmap->n < 0) { 175349467e7dSBarry Smith n = PETSC_DECIDE; 175449467e7dSBarry Smith } else { 175549467e7dSBarry Smith ierr = PetscMPIIntCast(newmat->cmap->n,&n);CHKERRQ(ierr); 175649467e7dSBarry Smith } 175749467e7dSBarry Smith 1758854ce69bSBarry Smith ierr = PetscMalloc1(size+2,&rowners);CHKERRQ(ierr); 175986d161a7SShri Abhyankar ierr = MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 176086d161a7SShri Abhyankar rowners[0] = 0; 176186d161a7SShri Abhyankar for (i=2; i<=size; i++) { 176286d161a7SShri Abhyankar rowners[i] += rowners[i-1]; 176386d161a7SShri Abhyankar } 176486d161a7SShri Abhyankar rstart = rowners[rank]; 176586d161a7SShri Abhyankar rend = rowners[rank+1]; 176686d161a7SShri Abhyankar 176786d161a7SShri Abhyankar /* distribute row lengths to all processors */ 176849467e7dSBarry Smith ierr = PetscMalloc1(rend-rstart,&ourlens);CHKERRQ(ierr); 176986d161a7SShri Abhyankar if (!rank) { 1770785e854fSJed Brown ierr = PetscMalloc1(M,&rowlengths);CHKERRQ(ierr); 177186d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 1772785e854fSJed Brown ierr = PetscMalloc1(size,&sndcounts);CHKERRQ(ierr); 177386d161a7SShri Abhyankar for (i=0; i<size; i++) sndcounts[i] = rowners[i+1] - rowners[i]; 177486d161a7SShri Abhyankar ierr = MPI_Scatterv(rowlengths,sndcounts,rowners,MPIU_INT,ourlens,rend-rstart,MPIU_INT,0,comm);CHKERRQ(ierr); 177586d161a7SShri Abhyankar ierr = PetscFree(sndcounts);CHKERRQ(ierr); 177686d161a7SShri Abhyankar } else { 177786d161a7SShri Abhyankar ierr = MPI_Scatterv(0,0,0,MPIU_INT,ourlens,rend-rstart,MPIU_INT,0,comm);CHKERRQ(ierr); 177886d161a7SShri Abhyankar } 177986d161a7SShri Abhyankar 178086d161a7SShri Abhyankar if (!rank) { 178186d161a7SShri Abhyankar /* calculate the number of nonzeros on each processor */ 1782785e854fSJed Brown ierr = PetscMalloc1(size,&procsnz);CHKERRQ(ierr); 178386d161a7SShri Abhyankar ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 178486d161a7SShri Abhyankar for (i=0; i<size; i++) { 178586d161a7SShri Abhyankar for (j=rowners[i]; j< rowners[i+1]; j++) { 178686d161a7SShri Abhyankar procsnz[i] += rowlengths[j]; 178786d161a7SShri Abhyankar } 178886d161a7SShri Abhyankar } 178986d161a7SShri Abhyankar ierr = PetscFree(rowlengths);CHKERRQ(ierr); 179086d161a7SShri Abhyankar 179186d161a7SShri Abhyankar /* determine max buffer needed and allocate it */ 179286d161a7SShri Abhyankar maxnz = 0; 179386d161a7SShri Abhyankar for (i=0; i<size; i++) { 179486d161a7SShri Abhyankar maxnz = PetscMax(maxnz,procsnz[i]); 179586d161a7SShri Abhyankar } 1796785e854fSJed Brown ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr); 179786d161a7SShri Abhyankar 179886d161a7SShri Abhyankar /* read in my part of the matrix column indices */ 179986d161a7SShri Abhyankar nz = procsnz[0]; 1800785e854fSJed Brown ierr = PetscMalloc1(nz,&mycols);CHKERRQ(ierr); 180186d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 180286d161a7SShri Abhyankar 180386d161a7SShri Abhyankar /* read in every one elses and ship off */ 180486d161a7SShri Abhyankar for (i=1; i<size; i++) { 180586d161a7SShri Abhyankar nz = procsnz[i]; 180686d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 180786d161a7SShri Abhyankar ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 180886d161a7SShri Abhyankar } 180986d161a7SShri Abhyankar ierr = PetscFree(cols);CHKERRQ(ierr); 181086d161a7SShri Abhyankar } else { 181186d161a7SShri Abhyankar /* determine buffer space needed for message */ 181286d161a7SShri Abhyankar nz = 0; 181386d161a7SShri Abhyankar for (i=0; i<m; i++) { 181486d161a7SShri Abhyankar nz += ourlens[i]; 181586d161a7SShri Abhyankar } 1816854ce69bSBarry Smith ierr = PetscMalloc1(nz+1,&mycols);CHKERRQ(ierr); 181786d161a7SShri Abhyankar 181886d161a7SShri Abhyankar /* receive message of column indices*/ 181986d161a7SShri Abhyankar ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 182086d161a7SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 182186d161a7SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 182286d161a7SShri Abhyankar } 182386d161a7SShri Abhyankar 182449467e7dSBarry Smith ierr = MatSetSizes(newmat,m,n,M,N);CHKERRQ(ierr); 1825dfdea288SBarry Smith a = (Mat_MPIDense*)newmat->data; 1826430ada49SBarry Smith if (!a->A) { 18270298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr); 1828dfdea288SBarry Smith } 182986d161a7SShri Abhyankar 183086d161a7SShri Abhyankar if (!rank) { 1831785e854fSJed Brown ierr = PetscMalloc1(maxnz,&vals);CHKERRQ(ierr); 183286d161a7SShri Abhyankar 183386d161a7SShri Abhyankar /* read in my part of the matrix numerical values */ 183486d161a7SShri Abhyankar nz = procsnz[0]; 183586d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 183686d161a7SShri Abhyankar 183786d161a7SShri Abhyankar /* insert into matrix */ 183886d161a7SShri Abhyankar jj = rstart; 183986d161a7SShri Abhyankar smycols = mycols; 184086d161a7SShri Abhyankar svals = vals; 184186d161a7SShri Abhyankar for (i=0; i<m; i++) { 184286d161a7SShri Abhyankar ierr = MatSetValues(newmat,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 184386d161a7SShri Abhyankar smycols += ourlens[i]; 184486d161a7SShri Abhyankar svals += ourlens[i]; 184586d161a7SShri Abhyankar jj++; 184686d161a7SShri Abhyankar } 184786d161a7SShri Abhyankar 184886d161a7SShri Abhyankar /* read in other processors and ship out */ 184986d161a7SShri Abhyankar for (i=1; i<size; i++) { 185086d161a7SShri Abhyankar nz = procsnz[i]; 185186d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 185286d161a7SShri Abhyankar ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 185386d161a7SShri Abhyankar } 185486d161a7SShri Abhyankar ierr = PetscFree(procsnz);CHKERRQ(ierr); 185586d161a7SShri Abhyankar } else { 185686d161a7SShri Abhyankar /* receive numeric values */ 1857854ce69bSBarry Smith ierr = PetscMalloc1(nz+1,&vals);CHKERRQ(ierr); 185886d161a7SShri Abhyankar 185986d161a7SShri Abhyankar /* receive message of values*/ 186086d161a7SShri Abhyankar ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr); 186186d161a7SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 186286d161a7SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 186386d161a7SShri Abhyankar 186486d161a7SShri Abhyankar /* insert into matrix */ 186586d161a7SShri Abhyankar jj = rstart; 186686d161a7SShri Abhyankar smycols = mycols; 186786d161a7SShri Abhyankar svals = vals; 186886d161a7SShri Abhyankar for (i=0; i<m; i++) { 186986d161a7SShri Abhyankar ierr = MatSetValues(newmat,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 187086d161a7SShri Abhyankar smycols += ourlens[i]; 187186d161a7SShri Abhyankar svals += ourlens[i]; 187286d161a7SShri Abhyankar jj++; 187386d161a7SShri Abhyankar } 187486d161a7SShri Abhyankar } 187549467e7dSBarry Smith ierr = PetscFree(ourlens);CHKERRQ(ierr); 187686d161a7SShri Abhyankar ierr = PetscFree(vals);CHKERRQ(ierr); 187786d161a7SShri Abhyankar ierr = PetscFree(mycols);CHKERRQ(ierr); 187886d161a7SShri Abhyankar ierr = PetscFree(rowners);CHKERRQ(ierr); 187986d161a7SShri Abhyankar 188086d161a7SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 188186d161a7SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 188286d161a7SShri Abhyankar PetscFunctionReturn(0); 188386d161a7SShri Abhyankar } 188486d161a7SShri Abhyankar 1885ace3abfcSBarry Smith PetscErrorCode MatEqual_MPIDense(Mat A,Mat B,PetscBool *flag) 18866e4ee0c6SHong Zhang { 18876e4ee0c6SHong Zhang Mat_MPIDense *matB = (Mat_MPIDense*)B->data,*matA = (Mat_MPIDense*)A->data; 18886e4ee0c6SHong Zhang Mat a,b; 1889ace3abfcSBarry Smith PetscBool flg; 18906e4ee0c6SHong Zhang PetscErrorCode ierr; 189190ace30eSBarry Smith 18926e4ee0c6SHong Zhang PetscFunctionBegin; 18936e4ee0c6SHong Zhang a = matA->A; 18946e4ee0c6SHong Zhang b = matB->A; 18956e4ee0c6SHong Zhang ierr = MatEqual(a,b,&flg);CHKERRQ(ierr); 1896b2566f29SBarry Smith ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 18976e4ee0c6SHong Zhang PetscFunctionReturn(0); 18986e4ee0c6SHong Zhang } 189990ace30eSBarry Smith 1900baa3c1c6SHong Zhang PetscErrorCode MatDestroy_MatTransMatMult_MPIDense_MPIDense(Mat A) 1901baa3c1c6SHong Zhang { 1902baa3c1c6SHong Zhang PetscErrorCode ierr; 1903baa3c1c6SHong Zhang Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1904baa3c1c6SHong Zhang Mat_TransMatMultDense *atb = a->atbdense; 1905baa3c1c6SHong Zhang 1906baa3c1c6SHong Zhang PetscFunctionBegin; 1907c5ef1628SHong Zhang ierr = PetscFree3(atb->sendbuf,atb->atbarray,atb->recvcounts);CHKERRQ(ierr); 1908baa3c1c6SHong Zhang ierr = (atb->destroy)(A);CHKERRQ(ierr); 1909baa3c1c6SHong Zhang ierr = PetscFree(atb);CHKERRQ(ierr); 1910baa3c1c6SHong Zhang PetscFunctionReturn(0); 1911baa3c1c6SHong Zhang } 1912baa3c1c6SHong Zhang 1913cc48ffa7SToby Isaac PetscErrorCode MatDestroy_MatMatTransMult_MPIDense_MPIDense(Mat A) 1914cc48ffa7SToby Isaac { 1915cc48ffa7SToby Isaac PetscErrorCode ierr; 1916cc48ffa7SToby Isaac Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1917cc48ffa7SToby Isaac Mat_MatTransMultDense *abt = a->abtdense; 1918cc48ffa7SToby Isaac 1919cc48ffa7SToby Isaac PetscFunctionBegin; 1920cc48ffa7SToby Isaac ierr = PetscFree2(abt->buf[0],abt->buf[1]);CHKERRQ(ierr); 1921faa55883SToby Isaac ierr = PetscFree2(abt->recvcounts,abt->recvdispls);CHKERRQ(ierr); 1922cc48ffa7SToby Isaac ierr = (abt->destroy)(A);CHKERRQ(ierr); 1923cc48ffa7SToby Isaac ierr = PetscFree(abt);CHKERRQ(ierr); 1924cc48ffa7SToby Isaac PetscFunctionReturn(0); 1925cc48ffa7SToby Isaac } 1926cc48ffa7SToby Isaac 1927cb20be35SHong Zhang PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 1928cb20be35SHong Zhang { 1929baa3c1c6SHong Zhang Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 1930660d5466SHong Zhang Mat_SeqDense *aseq=(Mat_SeqDense*)(a->A)->data, *bseq=(Mat_SeqDense*)(b->A)->data; 1931baa3c1c6SHong Zhang Mat_TransMatMultDense *atb = c->atbdense; 1932cb20be35SHong Zhang PetscErrorCode ierr; 1933cb20be35SHong Zhang MPI_Comm comm; 1934d5017740SHong Zhang PetscMPIInt rank,size,*recvcounts=atb->recvcounts; 1935c5ef1628SHong Zhang PetscScalar *carray,*atbarray=atb->atbarray,*sendbuf=atb->sendbuf; 1936d5017740SHong Zhang PetscInt i,cN=C->cmap->N,cM=C->rmap->N,proc,k,j; 1937660d5466SHong Zhang PetscScalar _DOne=1.0,_DZero=0.0; 1938adc7a786SHong Zhang PetscBLASInt am,an,bn,aN; 1939e68c0b26SHong Zhang const PetscInt *ranges; 1940cb20be35SHong Zhang 1941cb20be35SHong Zhang PetscFunctionBegin; 1942cb20be35SHong Zhang ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 1943cb20be35SHong Zhang ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 1944cb20be35SHong Zhang ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1945e68c0b26SHong Zhang 1946c5ef1628SHong Zhang /* compute atbarray = aseq^T * bseq */ 1947660d5466SHong Zhang ierr = PetscBLASIntCast(a->A->cmap->n,&an);CHKERRQ(ierr); 1948660d5466SHong Zhang ierr = PetscBLASIntCast(b->A->cmap->n,&bn);CHKERRQ(ierr); 1949660d5466SHong Zhang ierr = PetscBLASIntCast(a->A->rmap->n,&am);CHKERRQ(ierr); 1950adc7a786SHong Zhang ierr = PetscBLASIntCast(A->cmap->N,&aN);CHKERRQ(ierr); 1951adc7a786SHong Zhang PetscStackCallBLAS("BLASgemm",BLASgemm_("T","N",&an,&bn,&am,&_DOne,aseq->v,&aseq->lda,bseq->v,&bseq->lda,&_DZero,atbarray,&aN)); 1952cb20be35SHong Zhang 1953cb20be35SHong Zhang ierr = MatGetOwnershipRanges(C,&ranges);CHKERRQ(ierr); 1954c5ef1628SHong Zhang for (i=0; i<size; i++) recvcounts[i] = (ranges[i+1] - ranges[i])*cN; 1955cb20be35SHong Zhang 1956660d5466SHong Zhang /* arrange atbarray into sendbuf */ 1957cb20be35SHong Zhang k = 0; 1958cb20be35SHong Zhang for (proc=0; proc<size; proc++) { 1959baa3c1c6SHong Zhang for (j=0; j<cN; j++) { 1960c5ef1628SHong Zhang for (i=ranges[proc]; i<ranges[proc+1]; i++) sendbuf[k++] = atbarray[i+j*cM]; 1961cb20be35SHong Zhang } 1962cb20be35SHong Zhang } 1963c5ef1628SHong Zhang /* sum all atbarray to local values of C */ 1964660d5466SHong Zhang ierr = MatDenseGetArray(c->A,&carray);CHKERRQ(ierr); 19653462b7efSHong Zhang ierr = MPI_Reduce_scatter(sendbuf,carray,recvcounts,MPIU_SCALAR,MPIU_SUM,comm);CHKERRQ(ierr); 1966660d5466SHong Zhang ierr = MatDenseRestoreArray(c->A,&carray);CHKERRQ(ierr); 1967cb20be35SHong Zhang PetscFunctionReturn(0); 1968cb20be35SHong Zhang } 1969cb20be35SHong Zhang 1970cb20be35SHong Zhang PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat *C) 1971cb20be35SHong Zhang { 1972cb20be35SHong Zhang PetscErrorCode ierr; 1973baa3c1c6SHong Zhang Mat Cdense; 1974cb20be35SHong Zhang MPI_Comm comm; 1975baa3c1c6SHong Zhang PetscMPIInt size; 1976660d5466SHong Zhang PetscInt cm=A->cmap->n,cM,cN=B->cmap->N; 1977baa3c1c6SHong Zhang Mat_MPIDense *c; 1978baa3c1c6SHong Zhang Mat_TransMatMultDense *atb; 1979cb20be35SHong Zhang 1980cb20be35SHong Zhang PetscFunctionBegin; 1981baa3c1c6SHong Zhang ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 1982cb20be35SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) { 1983cb20be35SHong Zhang SETERRQ4(comm,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != B (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 1984cb20be35SHong Zhang } 1985cb20be35SHong Zhang 1986baa3c1c6SHong Zhang /* create matrix product Cdense */ 1987baa3c1c6SHong Zhang ierr = MatCreate(comm,&Cdense);CHKERRQ(ierr); 1988660d5466SHong Zhang ierr = MatSetSizes(Cdense,cm,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 1989baa3c1c6SHong Zhang ierr = MatSetType(Cdense,MATMPIDENSE);CHKERRQ(ierr); 1990baa3c1c6SHong Zhang ierr = MatMPIDenseSetPreallocation(Cdense,NULL);CHKERRQ(ierr); 1991baa3c1c6SHong Zhang ierr = MatAssemblyBegin(Cdense,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1992baa3c1c6SHong Zhang ierr = MatAssemblyEnd(Cdense,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1993baa3c1c6SHong Zhang *C = Cdense; 1994baa3c1c6SHong Zhang 1995baa3c1c6SHong Zhang /* create data structure for reuse Cdense */ 1996baa3c1c6SHong Zhang ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1997baa3c1c6SHong Zhang ierr = PetscNew(&atb);CHKERRQ(ierr); 1998660d5466SHong Zhang cM = Cdense->rmap->N; 1999c5ef1628SHong Zhang ierr = PetscMalloc3(cM*cN,&atb->sendbuf,cM*cN,&atb->atbarray,size,&atb->recvcounts);CHKERRQ(ierr); 2000baa3c1c6SHong Zhang 2001baa3c1c6SHong Zhang c = (Mat_MPIDense*)Cdense->data; 2002baa3c1c6SHong Zhang c->atbdense = atb; 2003baa3c1c6SHong Zhang atb->destroy = Cdense->ops->destroy; 2004baa3c1c6SHong Zhang Cdense->ops->destroy = MatDestroy_MatTransMatMult_MPIDense_MPIDense; 2005cb20be35SHong Zhang PetscFunctionReturn(0); 2006cb20be35SHong Zhang } 2007cb20be35SHong Zhang 2008cb20be35SHong Zhang PetscErrorCode MatTransposeMatMult_MPIDense_MPIDense(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C) 2009cb20be35SHong Zhang { 2010cb20be35SHong Zhang PetscErrorCode ierr; 2011cb20be35SHong Zhang 2012cb20be35SHong Zhang PetscFunctionBegin; 2013cb20be35SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 2014cb20be35SHong Zhang ierr = MatTransposeMatMultSymbolic_MPIDense_MPIDense(A,B,fill,C);CHKERRQ(ierr); 2015cb20be35SHong Zhang } 2016cb20be35SHong Zhang ierr = MatTransposeMatMultNumeric_MPIDense_MPIDense(A,B,*C);CHKERRQ(ierr); 2017cb20be35SHong Zhang PetscFunctionReturn(0); 2018cb20be35SHong Zhang } 2019320f2790SHong Zhang 2020cc48ffa7SToby Isaac static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat A, Mat B, PetscReal fill, Mat *C) 2021cc48ffa7SToby Isaac { 2022cc48ffa7SToby Isaac PetscErrorCode ierr; 2023cc48ffa7SToby Isaac Mat Cdense; 2024cc48ffa7SToby Isaac MPI_Comm comm; 2025cc48ffa7SToby Isaac PetscMPIInt i, size; 2026cc48ffa7SToby Isaac PetscInt maxRows, bufsiz; 2027cc48ffa7SToby Isaac Mat_MPIDense *c; 2028cc48ffa7SToby Isaac PetscMPIInt tag; 2029faa55883SToby Isaac const char *algTypes[2] = {"allgatherv","cyclic"}; 2030faa55883SToby Isaac PetscInt alg, nalg = 2; 2031cc48ffa7SToby Isaac Mat_MatTransMultDense *abt; 2032cc48ffa7SToby Isaac 2033cc48ffa7SToby Isaac PetscFunctionBegin; 2034cc48ffa7SToby Isaac ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 2035faa55883SToby Isaac alg = 0; /* default is allgatherv */ 2036faa55883SToby Isaac ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)A),((PetscObject)A)->prefix,"MatMatTransposeMult","Mat");CHKERRQ(ierr); 2037faa55883SToby Isaac ierr = PetscOptionsEList("-matmattransmult_mpidense_mpidense_via","Algorithmic approach","MatMatTransposeMult",algTypes,nalg,algTypes[0],&alg,NULL);CHKERRQ(ierr); 2038faa55883SToby Isaac ierr = PetscOptionsEnd();CHKERRQ(ierr); 2039cc48ffa7SToby Isaac if (A->cmap->N != B->cmap->N) { 2040cc48ffa7SToby Isaac SETERRQ2(comm,PETSC_ERR_ARG_SIZ,"Matrix global column dimensions are incompatible, A (%D) != B (%D)",A->cmap->N,B->cmap->N); 2041cc48ffa7SToby Isaac } 2042cc48ffa7SToby Isaac 2043cc48ffa7SToby Isaac /* create matrix product Cdense */ 2044cc48ffa7SToby Isaac ierr = MatCreate(comm,&Cdense);CHKERRQ(ierr); 2045cc48ffa7SToby Isaac ierr = MatSetSizes(Cdense,A->rmap->n,B->rmap->n,A->rmap->N,B->rmap->N);CHKERRQ(ierr); 2046cc48ffa7SToby Isaac ierr = MatSetType(Cdense,MATMPIDENSE);CHKERRQ(ierr); 2047cc48ffa7SToby Isaac ierr = MatMPIDenseSetPreallocation(Cdense,NULL);CHKERRQ(ierr); 2048cc48ffa7SToby Isaac ierr = PetscObjectGetNewTag((PetscObject)Cdense, &tag);CHKERRQ(ierr); 2049cc48ffa7SToby Isaac ierr = MatAssemblyBegin(Cdense,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2050cc48ffa7SToby Isaac ierr = MatAssemblyEnd(Cdense,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2051cc48ffa7SToby Isaac *C = Cdense; 2052cc48ffa7SToby Isaac 2053cc48ffa7SToby Isaac /* create data structure for reuse Cdense */ 2054cc48ffa7SToby Isaac ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2055cc48ffa7SToby Isaac ierr = PetscNew(&abt);CHKERRQ(ierr); 2056cc48ffa7SToby Isaac abt->tag = tag; 2057faa55883SToby Isaac abt->alg = alg; 2058faa55883SToby Isaac switch (alg) { 2059faa55883SToby Isaac case 1: 2060cc48ffa7SToby Isaac for (maxRows = 0, i = 0; i < size; i++) maxRows = PetscMax(maxRows, (B->rmap->range[i + 1] - B->rmap->range[i])); 2061cc48ffa7SToby Isaac bufsiz = A->cmap->N * maxRows; 2062cc48ffa7SToby Isaac ierr = PetscMalloc2(bufsiz,&(abt->buf[0]),bufsiz,&(abt->buf[1]));CHKERRQ(ierr); 2063faa55883SToby Isaac break; 2064faa55883SToby Isaac default: 2065faa55883SToby Isaac ierr = PetscMalloc2(B->rmap->n * B->cmap->N, &(abt->buf[0]), B->rmap->N * B->cmap->N, &(abt->buf[1]));CHKERRQ(ierr); 2066faa55883SToby Isaac ierr = PetscMalloc2(size,&(abt->recvcounts),size+1,&(abt->recvdispls));CHKERRQ(ierr); 2067faa55883SToby Isaac for (i = 0; i <= size; i++) abt->recvdispls[i] = B->rmap->range[i] * A->cmap->N; 2068faa55883SToby Isaac for (i = 0; i < size; i++) abt->recvcounts[i] = abt->recvdispls[i + 1] - abt->recvdispls[i]; 2069faa55883SToby Isaac break; 2070faa55883SToby Isaac } 2071cc48ffa7SToby Isaac 2072cc48ffa7SToby Isaac c = (Mat_MPIDense*)Cdense->data; 2073cc48ffa7SToby Isaac c->abtdense = abt; 2074cc48ffa7SToby Isaac abt->destroy = Cdense->ops->destroy; 2075cc48ffa7SToby Isaac Cdense->ops->destroy = MatDestroy_MatMatTransMult_MPIDense_MPIDense; 2076cc48ffa7SToby Isaac PetscFunctionReturn(0); 2077cc48ffa7SToby Isaac } 2078cc48ffa7SToby Isaac 2079faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(Mat A, Mat B, Mat C) 2080cc48ffa7SToby Isaac { 2081cc48ffa7SToby Isaac Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 2082cc48ffa7SToby Isaac Mat_SeqDense *aseq=(Mat_SeqDense*)(a->A)->data, *bseq=(Mat_SeqDense*)(b->A)->data; 2083cc48ffa7SToby Isaac Mat_SeqDense *cseq=(Mat_SeqDense*)(c->A)->data; 2084cc48ffa7SToby Isaac Mat_MatTransMultDense *abt = c->abtdense; 2085cc48ffa7SToby Isaac PetscErrorCode ierr; 2086cc48ffa7SToby Isaac MPI_Comm comm; 2087cc48ffa7SToby Isaac PetscMPIInt rank,size, sendsiz, recvsiz, sendto, recvfrom, recvisfrom; 2088ce36caf3SSatish Balay PetscScalar *sendbuf, *recvbuf=0, *carray; 2089cc48ffa7SToby Isaac PetscInt i,cK=A->cmap->N,k,j,bn; 2090cc48ffa7SToby Isaac PetscScalar _DOne=1.0,_DZero=0.0; 2091cc48ffa7SToby Isaac PetscBLASInt cm, cn, ck; 2092cc48ffa7SToby Isaac MPI_Request reqs[2]; 2093cc48ffa7SToby Isaac const PetscInt *ranges; 2094cc48ffa7SToby Isaac 2095cc48ffa7SToby Isaac PetscFunctionBegin; 2096cc48ffa7SToby Isaac ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 2097cc48ffa7SToby Isaac ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 2098cc48ffa7SToby Isaac ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2099cc48ffa7SToby Isaac 2100cc48ffa7SToby Isaac ierr = MatGetOwnershipRanges(B,&ranges);CHKERRQ(ierr); 2101cc48ffa7SToby Isaac bn = B->rmap->n; 2102cc48ffa7SToby Isaac if (bseq->lda == bn) { 2103cc48ffa7SToby Isaac sendbuf = bseq->v; 2104cc48ffa7SToby Isaac } else { 2105cc48ffa7SToby Isaac sendbuf = abt->buf[0]; 2106cc48ffa7SToby Isaac for (k = 0, i = 0; i < cK; i++) { 2107cc48ffa7SToby Isaac for (j = 0; j < bn; j++, k++) { 2108cc48ffa7SToby Isaac sendbuf[k] = bseq->v[i * bseq->lda + j]; 2109cc48ffa7SToby Isaac } 2110cc48ffa7SToby Isaac } 2111cc48ffa7SToby Isaac } 2112cc48ffa7SToby Isaac if (size > 1) { 2113cc48ffa7SToby Isaac sendto = (rank + size - 1) % size; 2114cc48ffa7SToby Isaac recvfrom = (rank + size + 1) % size; 2115cc48ffa7SToby Isaac } else { 2116cc48ffa7SToby Isaac sendto = recvfrom = 0; 2117cc48ffa7SToby Isaac } 2118cc48ffa7SToby Isaac ierr = PetscBLASIntCast(cK,&ck);CHKERRQ(ierr); 2119cc48ffa7SToby Isaac ierr = PetscBLASIntCast(c->A->rmap->n,&cm);CHKERRQ(ierr); 2120cc48ffa7SToby Isaac recvisfrom = rank; 2121cc48ffa7SToby Isaac for (i = 0; i < size; i++) { 2122cc48ffa7SToby Isaac /* we have finished receiving in sending, bufs can be read/modified */ 2123cc48ffa7SToby Isaac PetscInt nextrecvisfrom = (recvisfrom + 1) % size; /* which process the next recvbuf will originate on */ 2124cc48ffa7SToby Isaac PetscInt nextbn = ranges[nextrecvisfrom + 1] - ranges[nextrecvisfrom]; 2125cc48ffa7SToby Isaac 2126cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2127cc48ffa7SToby Isaac /* start the cyclic sends from sendbuf, to recvbuf (which will switch to sendbuf) */ 2128cc48ffa7SToby Isaac sendsiz = cK * bn; 2129cc48ffa7SToby Isaac recvsiz = cK * nextbn; 2130cc48ffa7SToby Isaac recvbuf = (i & 1) ? abt->buf[0] : abt->buf[1]; 2131cc48ffa7SToby Isaac ierr = MPI_Isend(sendbuf, sendsiz, MPIU_SCALAR, sendto, abt->tag, comm, &reqs[0]);CHKERRQ(ierr); 2132cc48ffa7SToby Isaac ierr = MPI_Irecv(recvbuf, recvsiz, MPIU_SCALAR, recvfrom, abt->tag, comm, &reqs[1]);CHKERRQ(ierr); 2133cc48ffa7SToby Isaac } 2134cc48ffa7SToby Isaac 2135cc48ffa7SToby Isaac /* local aseq * sendbuf^T */ 2136cc48ffa7SToby Isaac ierr = PetscBLASIntCast(ranges[recvisfrom + 1] - ranges[recvisfrom], &cn);CHKERRQ(ierr); 2137cc48ffa7SToby Isaac carray = &cseq->v[cseq->lda * ranges[recvisfrom]]; 2138cc48ffa7SToby Isaac PetscStackCallBLAS("BLASgemm",BLASgemm_("N","T",&cm,&cn,&ck,&_DOne,aseq->v,&aseq->lda,sendbuf,&cn,&_DZero,carray,&cseq->lda)); 2139cc48ffa7SToby Isaac 2140cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2141cc48ffa7SToby Isaac /* wait for the sends and receives to complete, swap sendbuf and recvbuf */ 2142cc48ffa7SToby Isaac ierr = MPI_Waitall(2, reqs, MPI_STATUSES_IGNORE);CHKERRQ(ierr); 2143cc48ffa7SToby Isaac } 2144cc48ffa7SToby Isaac bn = nextbn; 2145cc48ffa7SToby Isaac recvisfrom = nextrecvisfrom; 2146cc48ffa7SToby Isaac sendbuf = recvbuf; 2147cc48ffa7SToby Isaac } 2148cc48ffa7SToby Isaac PetscFunctionReturn(0); 2149cc48ffa7SToby Isaac } 2150cc48ffa7SToby Isaac 2151faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(Mat A, Mat B, Mat C) 2152faa55883SToby Isaac { 2153faa55883SToby Isaac Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 2154faa55883SToby Isaac Mat_SeqDense *aseq=(Mat_SeqDense*)(a->A)->data, *bseq=(Mat_SeqDense*)(b->A)->data; 2155faa55883SToby Isaac Mat_SeqDense *cseq=(Mat_SeqDense*)(c->A)->data; 2156faa55883SToby Isaac Mat_MatTransMultDense *abt = c->abtdense; 2157faa55883SToby Isaac PetscErrorCode ierr; 2158faa55883SToby Isaac MPI_Comm comm; 2159faa55883SToby Isaac PetscMPIInt rank,size; 2160faa55883SToby Isaac PetscScalar *sendbuf, *recvbuf; 2161faa55883SToby Isaac PetscInt i,cK=A->cmap->N,k,j,bn; 2162faa55883SToby Isaac PetscScalar _DOne=1.0,_DZero=0.0; 2163faa55883SToby Isaac PetscBLASInt cm, cn, ck; 2164faa55883SToby Isaac 2165faa55883SToby Isaac PetscFunctionBegin; 2166faa55883SToby Isaac ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 2167faa55883SToby Isaac ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 2168faa55883SToby Isaac ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2169faa55883SToby Isaac 2170faa55883SToby Isaac /* copy transpose of B into buf[0] */ 2171faa55883SToby Isaac bn = B->rmap->n; 2172faa55883SToby Isaac sendbuf = abt->buf[0]; 2173faa55883SToby Isaac recvbuf = abt->buf[1]; 2174faa55883SToby Isaac for (k = 0, j = 0; j < bn; j++) { 2175faa55883SToby Isaac for (i = 0; i < cK; i++, k++) { 2176faa55883SToby Isaac sendbuf[k] = bseq->v[i * bseq->lda + j]; 2177faa55883SToby Isaac } 2178faa55883SToby Isaac } 2179faa55883SToby Isaac ierr = MPI_Allgatherv(sendbuf, bn * cK, MPIU_SCALAR, recvbuf, abt->recvcounts, abt->recvdispls, MPIU_SCALAR, comm);CHKERRQ(ierr); 2180faa55883SToby Isaac ierr = PetscBLASIntCast(cK,&ck);CHKERRQ(ierr); 2181faa55883SToby Isaac ierr = PetscBLASIntCast(c->A->rmap->n,&cm);CHKERRQ(ierr); 2182faa55883SToby Isaac ierr = PetscBLASIntCast(c->A->cmap->n,&cn);CHKERRQ(ierr); 2183faa55883SToby Isaac PetscStackCallBLAS("BLASgemm",BLASgemm_("N","N",&cm,&cn,&ck,&_DOne,aseq->v,&aseq->lda,recvbuf,&ck,&_DZero,cseq->v,&cseq->lda)); 2184faa55883SToby Isaac PetscFunctionReturn(0); 2185faa55883SToby Isaac } 2186faa55883SToby Isaac 2187faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat A, Mat B, Mat C) 2188faa55883SToby Isaac { 2189faa55883SToby Isaac Mat_MPIDense *c=(Mat_MPIDense*)C->data; 2190faa55883SToby Isaac Mat_MatTransMultDense *abt = c->abtdense; 2191faa55883SToby Isaac PetscErrorCode ierr; 2192faa55883SToby Isaac 2193faa55883SToby Isaac PetscFunctionBegin; 2194faa55883SToby Isaac switch (abt->alg) { 2195faa55883SToby Isaac case 1: 2196faa55883SToby Isaac ierr = MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(A, B, C);CHKERRQ(ierr); 2197faa55883SToby Isaac break; 2198faa55883SToby Isaac default: 2199faa55883SToby Isaac ierr = MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(A, B, C);CHKERRQ(ierr); 2200faa55883SToby Isaac break; 2201faa55883SToby Isaac } 2202faa55883SToby Isaac PetscFunctionReturn(0); 2203faa55883SToby Isaac } 2204faa55883SToby Isaac 2205cc48ffa7SToby Isaac static PetscErrorCode MatMatTransposeMult_MPIDense_MPIDense(Mat A,Mat B, MatReuse scall, PetscReal fill, Mat *C) 2206cc48ffa7SToby Isaac { 2207cc48ffa7SToby Isaac PetscErrorCode ierr; 2208cc48ffa7SToby Isaac 2209cc48ffa7SToby Isaac PetscFunctionBegin; 2210cc48ffa7SToby Isaac if (scall == MAT_INITIAL_MATRIX) { 2211cc48ffa7SToby Isaac ierr = MatMatTransposeMultSymbolic_MPIDense_MPIDense(A,B,fill,C);CHKERRQ(ierr); 2212cc48ffa7SToby Isaac } 2213cc48ffa7SToby Isaac ierr = MatMatTransposeMultNumeric_MPIDense_MPIDense(A,B,*C);CHKERRQ(ierr); 2214cc48ffa7SToby Isaac PetscFunctionReturn(0); 2215cc48ffa7SToby Isaac } 2216cc48ffa7SToby Isaac 2217320f2790SHong Zhang PetscErrorCode MatDestroy_MatMatMult_MPIDense_MPIDense(Mat A) 2218320f2790SHong Zhang { 2219320f2790SHong Zhang PetscErrorCode ierr; 2220320f2790SHong Zhang Mat_MPIDense *a = (Mat_MPIDense*)A->data; 2221320f2790SHong Zhang Mat_MatMultDense *ab = a->abdense; 2222320f2790SHong Zhang 2223320f2790SHong Zhang PetscFunctionBegin; 2224320f2790SHong Zhang ierr = MatDestroy(&ab->Ce);CHKERRQ(ierr); 2225320f2790SHong Zhang ierr = MatDestroy(&ab->Ae);CHKERRQ(ierr); 2226320f2790SHong Zhang ierr = MatDestroy(&ab->Be);CHKERRQ(ierr); 2227320f2790SHong Zhang 2228320f2790SHong Zhang ierr = (ab->destroy)(A);CHKERRQ(ierr); 2229320f2790SHong Zhang ierr = PetscFree(ab);CHKERRQ(ierr); 2230320f2790SHong Zhang PetscFunctionReturn(0); 2231320f2790SHong Zhang } 2232320f2790SHong Zhang 22335242a7b1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 2234320f2790SHong Zhang PetscErrorCode MatMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 2235320f2790SHong Zhang { 2236320f2790SHong Zhang PetscErrorCode ierr; 2237320f2790SHong Zhang Mat_MPIDense *c=(Mat_MPIDense*)C->data; 2238320f2790SHong Zhang Mat_MatMultDense *ab=c->abdense; 2239320f2790SHong Zhang 2240320f2790SHong Zhang PetscFunctionBegin; 2241de0a22f0SHong Zhang ierr = MatConvert_MPIDense_Elemental(A,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Ae);CHKERRQ(ierr); 2242de0a22f0SHong Zhang ierr = MatConvert_MPIDense_Elemental(B,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Be);CHKERRQ(ierr); 2243320f2790SHong Zhang ierr = MatMatMultNumeric(ab->Ae,ab->Be,ab->Ce);CHKERRQ(ierr); 2244de0a22f0SHong Zhang ierr = MatConvert(ab->Ce,MATMPIDENSE,MAT_REUSE_MATRIX,&C);CHKERRQ(ierr); 2245320f2790SHong Zhang PetscFunctionReturn(0); 2246320f2790SHong Zhang } 2247320f2790SHong Zhang 2248320f2790SHong Zhang PetscErrorCode MatMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat *C) 2249320f2790SHong Zhang { 2250320f2790SHong Zhang PetscErrorCode ierr; 2251320f2790SHong Zhang Mat Ae,Be,Ce; 2252320f2790SHong Zhang Mat_MPIDense *c; 2253320f2790SHong Zhang Mat_MatMultDense *ab; 2254320f2790SHong Zhang 2255320f2790SHong Zhang PetscFunctionBegin; 2256320f2790SHong Zhang if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend) { 2257378336b6SHong Zhang SETERRQ4(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != B (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 2258320f2790SHong Zhang } 2259320f2790SHong Zhang 2260320f2790SHong Zhang /* convert A and B to Elemental matrices Ae and Be */ 2261320f2790SHong Zhang ierr = MatConvert(A,MATELEMENTAL,MAT_INITIAL_MATRIX, &Ae);CHKERRQ(ierr); 2262320f2790SHong Zhang ierr = MatConvert(B,MATELEMENTAL,MAT_INITIAL_MATRIX, &Be);CHKERRQ(ierr); 2263320f2790SHong Zhang 2264320f2790SHong Zhang /* Ce = Ae*Be */ 2265320f2790SHong Zhang ierr = MatMatMultSymbolic(Ae,Be,fill,&Ce);CHKERRQ(ierr); 2266320f2790SHong Zhang ierr = MatMatMultNumeric(Ae,Be,Ce);CHKERRQ(ierr); 2267320f2790SHong Zhang 2268320f2790SHong Zhang /* convert Ce to C */ 2269320f2790SHong Zhang ierr = MatConvert(Ce,MATMPIDENSE,MAT_INITIAL_MATRIX,C);CHKERRQ(ierr); 2270320f2790SHong Zhang 2271320f2790SHong Zhang /* create data structure for reuse Cdense */ 2272320f2790SHong Zhang ierr = PetscNew(&ab);CHKERRQ(ierr); 2273320f2790SHong Zhang c = (Mat_MPIDense*)(*C)->data; 2274320f2790SHong Zhang c->abdense = ab; 2275320f2790SHong Zhang 2276320f2790SHong Zhang ab->Ae = Ae; 2277320f2790SHong Zhang ab->Be = Be; 2278320f2790SHong Zhang ab->Ce = Ce; 2279320f2790SHong Zhang ab->destroy = (*C)->ops->destroy; 2280320f2790SHong Zhang (*C)->ops->destroy = MatDestroy_MatMatMult_MPIDense_MPIDense; 22819775878aSHong Zhang (*C)->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIDense; 2282320f2790SHong Zhang PetscFunctionReturn(0); 2283320f2790SHong Zhang } 2284320f2790SHong Zhang 2285150d2497SBarry Smith PETSC_INTERN PetscErrorCode MatMatMult_MPIDense_MPIDense(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C) 2286320f2790SHong Zhang { 2287320f2790SHong Zhang PetscErrorCode ierr; 2288320f2790SHong Zhang 2289320f2790SHong Zhang PetscFunctionBegin; 2290320f2790SHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* simbolic product includes numeric product */ 229157299f2fSHong Zhang ierr = PetscLogEventBegin(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr); 2292320f2790SHong Zhang ierr = MatMatMultSymbolic_MPIDense_MPIDense(A,B,fill,C);CHKERRQ(ierr); 229357299f2fSHong Zhang ierr = PetscLogEventEnd(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr); 2294320f2790SHong Zhang } else { 229557299f2fSHong Zhang ierr = PetscLogEventBegin(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr); 2296320f2790SHong Zhang ierr = MatMatMultNumeric_MPIDense_MPIDense(A,B,*C);CHKERRQ(ierr); 229757299f2fSHong Zhang ierr = PetscLogEventEnd(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr); 2298320f2790SHong Zhang } 2299320f2790SHong Zhang PetscFunctionReturn(0); 2300320f2790SHong Zhang } 23015242a7b1SHong Zhang #endif 230286aefd0dSHong Zhang 2303