xref: /petsc/src/mat/impls/dense/mpi/mpidense.c (revision 49a6ff4bde1c92b5077fb1a754cc0af9d6e18201)
1be1d678aSKris Buschelman 
2ed3cc1f0SBarry Smith /*
3ed3cc1f0SBarry Smith    Basic functions for basic parallel dense matrices.
4ed3cc1f0SBarry Smith */
5ed3cc1f0SBarry Smith 
604fea9ffSBarry Smith 
7c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h>    /*I   "petscmat.h"  I*/
88949adfdSHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h>
9baa3c1c6SHong Zhang #include <petscblaslapack.h>
108965ea79SLois Curfman McInnes 
11ab92ecdeSBarry Smith /*@
12ab92ecdeSBarry Smith 
13ab92ecdeSBarry Smith       MatDenseGetLocalMatrix - For a MATMPIDENSE or MATSEQDENSE matrix returns the sequential
14ab92ecdeSBarry Smith               matrix that represents the operator. For sequential matrices it returns itself.
15ab92ecdeSBarry Smith 
16ab92ecdeSBarry Smith     Input Parameter:
17ab92ecdeSBarry Smith .      A - the Seq or MPI dense matrix
18ab92ecdeSBarry Smith 
19ab92ecdeSBarry Smith     Output Parameter:
20ab92ecdeSBarry Smith .      B - the inner matrix
21ab92ecdeSBarry Smith 
228e6c10adSSatish Balay     Level: intermediate
238e6c10adSSatish Balay 
24ab92ecdeSBarry Smith @*/
25ab92ecdeSBarry Smith PetscErrorCode MatDenseGetLocalMatrix(Mat A,Mat *B)
26ab92ecdeSBarry Smith {
27ab92ecdeSBarry Smith   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
28ab92ecdeSBarry Smith   PetscErrorCode ierr;
29ace3abfcSBarry Smith   PetscBool      flg;
30ab92ecdeSBarry Smith 
31ab92ecdeSBarry Smith   PetscFunctionBegin;
32251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIDENSE,&flg);CHKERRQ(ierr);
332205254eSKarl Rupp   if (flg) *B = mat->A;
342205254eSKarl Rupp   else *B = A;
35ab92ecdeSBarry Smith   PetscFunctionReturn(0);
36ab92ecdeSBarry Smith }
37ab92ecdeSBarry Smith 
38ba8c8a56SBarry Smith PetscErrorCode MatGetRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
39ba8c8a56SBarry Smith {
40ba8c8a56SBarry Smith   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
41ba8c8a56SBarry Smith   PetscErrorCode ierr;
42d0f46423SBarry Smith   PetscInt       lrow,rstart = A->rmap->rstart,rend = A->rmap->rend;
43ba8c8a56SBarry Smith 
44ba8c8a56SBarry Smith   PetscFunctionBegin;
45e7e72b3dSBarry Smith   if (row < rstart || row >= rend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows");
46ba8c8a56SBarry Smith   lrow = row - rstart;
47ba8c8a56SBarry Smith   ierr = MatGetRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v);CHKERRQ(ierr);
48ba8c8a56SBarry Smith   PetscFunctionReturn(0);
49ba8c8a56SBarry Smith }
50ba8c8a56SBarry Smith 
51ba8c8a56SBarry Smith PetscErrorCode MatRestoreRow_MPIDense(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
52ba8c8a56SBarry Smith {
53ba8c8a56SBarry Smith   PetscErrorCode ierr;
54ba8c8a56SBarry Smith 
55ba8c8a56SBarry Smith   PetscFunctionBegin;
56ba8c8a56SBarry Smith   if (idx) {ierr = PetscFree(*idx);CHKERRQ(ierr);}
57ba8c8a56SBarry Smith   if (v) {ierr = PetscFree(*v);CHKERRQ(ierr);}
58ba8c8a56SBarry Smith   PetscFunctionReturn(0);
59ba8c8a56SBarry Smith }
60ba8c8a56SBarry Smith 
6111bd1e4dSLisandro Dalcin PetscErrorCode  MatGetDiagonalBlock_MPIDense(Mat A,Mat *a)
620de54da6SSatish Balay {
630de54da6SSatish Balay   Mat_MPIDense   *mdn = (Mat_MPIDense*)A->data;
646849ba73SBarry Smith   PetscErrorCode ierr;
65d0f46423SBarry Smith   PetscInt       m = A->rmap->n,rstart = A->rmap->rstart;
6687828ca2SBarry Smith   PetscScalar    *array;
670de54da6SSatish Balay   MPI_Comm       comm;
6811bd1e4dSLisandro Dalcin   Mat            B;
690de54da6SSatish Balay 
700de54da6SSatish Balay   PetscFunctionBegin;
71e32f2f54SBarry Smith   if (A->rmap->N != A->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only square matrices supported.");
720de54da6SSatish Balay 
7311bd1e4dSLisandro Dalcin   ierr = PetscObjectQuery((PetscObject)A,"DiagonalBlock",(PetscObject*)&B);CHKERRQ(ierr);
7411bd1e4dSLisandro Dalcin   if (!B) {
750de54da6SSatish Balay     ierr = PetscObjectGetComm((PetscObject)(mdn->A),&comm);CHKERRQ(ierr);
7611bd1e4dSLisandro Dalcin     ierr = MatCreate(comm,&B);CHKERRQ(ierr);
7711bd1e4dSLisandro Dalcin     ierr = MatSetSizes(B,m,m,m,m);CHKERRQ(ierr);
7811bd1e4dSLisandro Dalcin     ierr = MatSetType(B,((PetscObject)mdn->A)->type_name);CHKERRQ(ierr);
798c778c55SBarry Smith     ierr = MatDenseGetArray(mdn->A,&array);CHKERRQ(ierr);
8011bd1e4dSLisandro Dalcin     ierr = MatSeqDenseSetPreallocation(B,array+m*rstart);CHKERRQ(ierr);
818c778c55SBarry Smith     ierr = MatDenseRestoreArray(mdn->A,&array);CHKERRQ(ierr);
8211bd1e4dSLisandro Dalcin     ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
8311bd1e4dSLisandro Dalcin     ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
8411bd1e4dSLisandro Dalcin     ierr = PetscObjectCompose((PetscObject)A,"DiagonalBlock",(PetscObject)B);CHKERRQ(ierr);
8511bd1e4dSLisandro Dalcin     *a   = B;
8611bd1e4dSLisandro Dalcin     ierr = MatDestroy(&B);CHKERRQ(ierr);
872205254eSKarl Rupp   } else *a = B;
880de54da6SSatish Balay   PetscFunctionReturn(0);
890de54da6SSatish Balay }
900de54da6SSatish Balay 
9113f74950SBarry Smith PetscErrorCode MatSetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],const PetscScalar v[],InsertMode addv)
928965ea79SLois Curfman McInnes {
9339b7565bSBarry Smith   Mat_MPIDense   *A = (Mat_MPIDense*)mat->data;
94dfbe8321SBarry Smith   PetscErrorCode ierr;
95d0f46423SBarry Smith   PetscInt       i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row;
96ace3abfcSBarry Smith   PetscBool      roworiented = A->roworiented;
978965ea79SLois Curfman McInnes 
983a40ed3dSBarry Smith   PetscFunctionBegin;
998965ea79SLois Curfman McInnes   for (i=0; i<m; i++) {
1005ef9f2a5SBarry Smith     if (idxm[i] < 0) continue;
101e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large");
1028965ea79SLois Curfman McInnes     if (idxm[i] >= rstart && idxm[i] < rend) {
1038965ea79SLois Curfman McInnes       row = idxm[i] - rstart;
10439b7565bSBarry Smith       if (roworiented) {
10539b7565bSBarry Smith         ierr = MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv);CHKERRQ(ierr);
1063a40ed3dSBarry Smith       } else {
1078965ea79SLois Curfman McInnes         for (j=0; j<n; j++) {
1085ef9f2a5SBarry Smith           if (idxn[j] < 0) continue;
109e32f2f54SBarry Smith           if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large");
11039b7565bSBarry Smith           ierr = MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv);CHKERRQ(ierr);
11139b7565bSBarry Smith         }
1128965ea79SLois Curfman McInnes       }
1132205254eSKarl Rupp     } else if (!A->donotstash) {
1145080c13bSMatthew G Knepley       mat->assembled = PETSC_FALSE;
11539b7565bSBarry Smith       if (roworiented) {
116b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,idxm[i],n,idxn,v+i*n,PETSC_FALSE);CHKERRQ(ierr);
117d36fbae8SSatish Balay       } else {
118b400d20cSBarry Smith         ierr = MatStashValuesCol_Private(&mat->stash,idxm[i],n,idxn,v+i,m,PETSC_FALSE);CHKERRQ(ierr);
11939b7565bSBarry Smith       }
120b49de8d1SLois Curfman McInnes     }
121b49de8d1SLois Curfman McInnes   }
1223a40ed3dSBarry Smith   PetscFunctionReturn(0);
123b49de8d1SLois Curfman McInnes }
124b49de8d1SLois Curfman McInnes 
12513f74950SBarry Smith PetscErrorCode MatGetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
126b49de8d1SLois Curfman McInnes {
127b49de8d1SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
128dfbe8321SBarry Smith   PetscErrorCode ierr;
129d0f46423SBarry Smith   PetscInt       i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row;
130b49de8d1SLois Curfman McInnes 
1313a40ed3dSBarry Smith   PetscFunctionBegin;
132b49de8d1SLois Curfman McInnes   for (i=0; i<m; i++) {
133e32f2f54SBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); */
134e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large");
135b49de8d1SLois Curfman McInnes     if (idxm[i] >= rstart && idxm[i] < rend) {
136b49de8d1SLois Curfman McInnes       row = idxm[i] - rstart;
137b49de8d1SLois Curfman McInnes       for (j=0; j<n; j++) {
138e32f2f54SBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); */
139e7e72b3dSBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large");
140b49de8d1SLois Curfman McInnes         ierr = MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j);CHKERRQ(ierr);
141b49de8d1SLois Curfman McInnes       }
142e7e72b3dSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
1438965ea79SLois Curfman McInnes   }
1443a40ed3dSBarry Smith   PetscFunctionReturn(0);
1458965ea79SLois Curfman McInnes }
1468965ea79SLois Curfman McInnes 
147*49a6ff4bSBarry Smith static PetscErrorCode MatDenseGetLDA_MPIDense(Mat A,PetscInt *lda)
148*49a6ff4bSBarry Smith {
149*49a6ff4bSBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
150*49a6ff4bSBarry Smith   PetscErrorCode ierr;
151*49a6ff4bSBarry Smith 
152*49a6ff4bSBarry Smith   PetscFunctionBegin;
153*49a6ff4bSBarry Smith   ierr = MatDenseGetLDA(a->A,lda);CHKERRQ(ierr);
154*49a6ff4bSBarry Smith   PetscFunctionReturn(0);
155*49a6ff4bSBarry Smith }
156*49a6ff4bSBarry Smith 
157d3042a70SBarry Smith static PetscErrorCode MatDenseGetArray_MPIDense(Mat A,PetscScalar *array[])
158ff14e315SSatish Balay {
159ff14e315SSatish Balay   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
160dfbe8321SBarry Smith   PetscErrorCode ierr;
161ff14e315SSatish Balay 
1623a40ed3dSBarry Smith   PetscFunctionBegin;
1638c778c55SBarry Smith   ierr = MatDenseGetArray(a->A,array);CHKERRQ(ierr);
1643a40ed3dSBarry Smith   PetscFunctionReturn(0);
165ff14e315SSatish Balay }
166ff14e315SSatish Balay 
1678572280aSBarry Smith static PetscErrorCode MatDenseGetArrayRead_MPIDense(Mat A,const PetscScalar *array[])
1688572280aSBarry Smith {
1698572280aSBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
1708572280aSBarry Smith   PetscErrorCode ierr;
1718572280aSBarry Smith 
1728572280aSBarry Smith   PetscFunctionBegin;
1738572280aSBarry Smith   ierr = MatDenseGetArrayRead(a->A,array);CHKERRQ(ierr);
1748572280aSBarry Smith   PetscFunctionReturn(0);
1758572280aSBarry Smith }
1768572280aSBarry Smith 
177d3042a70SBarry Smith static PetscErrorCode MatDensePlaceArray_MPIDense(Mat A,const PetscScalar array[])
178d3042a70SBarry Smith {
179d3042a70SBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
180d3042a70SBarry Smith   PetscErrorCode ierr;
181d3042a70SBarry Smith 
182d3042a70SBarry Smith   PetscFunctionBegin;
183d3042a70SBarry Smith   ierr = MatDensePlaceArray(a->A,array);CHKERRQ(ierr);
184d3042a70SBarry Smith   PetscFunctionReturn(0);
185d3042a70SBarry Smith }
186d3042a70SBarry Smith 
187d3042a70SBarry Smith static PetscErrorCode MatDenseResetArray_MPIDense(Mat A)
188d3042a70SBarry Smith {
189d3042a70SBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
190d3042a70SBarry Smith   PetscErrorCode ierr;
191d3042a70SBarry Smith 
192d3042a70SBarry Smith   PetscFunctionBegin;
193d3042a70SBarry Smith   ierr = MatDenseResetArray(a->A);CHKERRQ(ierr);
194d3042a70SBarry Smith   PetscFunctionReturn(0);
195d3042a70SBarry Smith }
196d3042a70SBarry Smith 
1977dae84e0SHong Zhang static PetscErrorCode MatCreateSubMatrix_MPIDense(Mat A,IS isrow,IS iscol,MatReuse scall,Mat *B)
198ca3fa75bSLois Curfman McInnes {
199ca3fa75bSLois Curfman McInnes   Mat_MPIDense   *mat  = (Mat_MPIDense*)A->data,*newmatd;
200ca3fa75bSLois Curfman McInnes   Mat_SeqDense   *lmat = (Mat_SeqDense*)mat->A->data;
2016849ba73SBarry Smith   PetscErrorCode ierr;
2024aa3045dSJed Brown   PetscInt       i,j,rstart,rend,nrows,ncols,Ncols,nlrows,nlcols;
2035d0c19d7SBarry Smith   const PetscInt *irow,*icol;
20487828ca2SBarry Smith   PetscScalar    *av,*bv,*v = lmat->v;
205ca3fa75bSLois Curfman McInnes   Mat            newmat;
2064aa3045dSJed Brown   IS             iscol_local;
20742a884f0SBarry Smith   MPI_Comm       comm_is,comm_mat;
208ca3fa75bSLois Curfman McInnes 
209ca3fa75bSLois Curfman McInnes   PetscFunctionBegin;
21042a884f0SBarry Smith   ierr = PetscObjectGetComm((PetscObject)A,&comm_mat);CHKERRQ(ierr);
21142a884f0SBarry Smith   ierr = PetscObjectGetComm((PetscObject)iscol,&comm_is);CHKERRQ(ierr);
21242a884f0SBarry Smith   if (comm_mat != comm_is) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NOTSAMECOMM,"IS communicator must match matrix communicator");
21342a884f0SBarry Smith 
2144aa3045dSJed Brown   ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr);
215ca3fa75bSLois Curfman McInnes   ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr);
2164aa3045dSJed Brown   ierr = ISGetIndices(iscol_local,&icol);CHKERRQ(ierr);
217b9b97703SBarry Smith   ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr);
218b9b97703SBarry Smith   ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr);
2194aa3045dSJed Brown   ierr = ISGetSize(iscol,&Ncols);CHKERRQ(ierr); /* global number of columns, size of iscol_local */
220ca3fa75bSLois Curfman McInnes 
221ca3fa75bSLois Curfman McInnes   /* No parallel redistribution currently supported! Should really check each index set
2227eba5e9cSLois Curfman McInnes      to comfirm that it is OK.  ... Currently supports only submatrix same partitioning as
2237eba5e9cSLois Curfman McInnes      original matrix! */
224ca3fa75bSLois Curfman McInnes 
225ca3fa75bSLois Curfman McInnes   ierr = MatGetLocalSize(A,&nlrows,&nlcols);CHKERRQ(ierr);
2267eba5e9cSLois Curfman McInnes   ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr);
227ca3fa75bSLois Curfman McInnes 
228ca3fa75bSLois Curfman McInnes   /* Check submatrix call */
229ca3fa75bSLois Curfman McInnes   if (scall == MAT_REUSE_MATRIX) {
230e32f2f54SBarry Smith     /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */
2317eba5e9cSLois Curfman McInnes     /* Really need to test rows and column sizes! */
232ca3fa75bSLois Curfman McInnes     newmat = *B;
233ca3fa75bSLois Curfman McInnes   } else {
234ca3fa75bSLois Curfman McInnes     /* Create and fill new matrix */
235ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)A),&newmat);CHKERRQ(ierr);
2364aa3045dSJed Brown     ierr = MatSetSizes(newmat,nrows,ncols,PETSC_DECIDE,Ncols);CHKERRQ(ierr);
2377adad957SLisandro Dalcin     ierr = MatSetType(newmat,((PetscObject)A)->type_name);CHKERRQ(ierr);
2380298fd71SBarry Smith     ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr);
239ca3fa75bSLois Curfman McInnes   }
240ca3fa75bSLois Curfman McInnes 
241ca3fa75bSLois Curfman McInnes   /* Now extract the data pointers and do the copy, column at a time */
242ca3fa75bSLois Curfman McInnes   newmatd = (Mat_MPIDense*)newmat->data;
243ca3fa75bSLois Curfman McInnes   bv      = ((Mat_SeqDense*)newmatd->A->data)->v;
244ca3fa75bSLois Curfman McInnes 
2454aa3045dSJed Brown   for (i=0; i<Ncols; i++) {
24625a33276SHong Zhang     av = v + ((Mat_SeqDense*)mat->A->data)->lda*icol[i];
247ca3fa75bSLois Curfman McInnes     for (j=0; j<nrows; j++) {
2487eba5e9cSLois Curfman McInnes       *bv++ = av[irow[j] - rstart];
249ca3fa75bSLois Curfman McInnes     }
250ca3fa75bSLois Curfman McInnes   }
251ca3fa75bSLois Curfman McInnes 
252ca3fa75bSLois Curfman McInnes   /* Assemble the matrices so that the correct flags are set */
253ca3fa75bSLois Curfman McInnes   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
254ca3fa75bSLois Curfman McInnes   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
255ca3fa75bSLois Curfman McInnes 
256ca3fa75bSLois Curfman McInnes   /* Free work space */
257ca3fa75bSLois Curfman McInnes   ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr);
2585bdf786aSShri Abhyankar   ierr = ISRestoreIndices(iscol_local,&icol);CHKERRQ(ierr);
25932bb1f2dSLisandro Dalcin   ierr = ISDestroy(&iscol_local);CHKERRQ(ierr);
260ca3fa75bSLois Curfman McInnes   *B   = newmat;
261ca3fa75bSLois Curfman McInnes   PetscFunctionReturn(0);
262ca3fa75bSLois Curfman McInnes }
263ca3fa75bSLois Curfman McInnes 
2648c778c55SBarry Smith PetscErrorCode MatDenseRestoreArray_MPIDense(Mat A,PetscScalar *array[])
265ff14e315SSatish Balay {
26673a71a0fSBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
26773a71a0fSBarry Smith   PetscErrorCode ierr;
26873a71a0fSBarry Smith 
2693a40ed3dSBarry Smith   PetscFunctionBegin;
2708c778c55SBarry Smith   ierr = MatDenseRestoreArray(a->A,array);CHKERRQ(ierr);
2713a40ed3dSBarry Smith   PetscFunctionReturn(0);
272ff14e315SSatish Balay }
273ff14e315SSatish Balay 
2748572280aSBarry Smith PetscErrorCode MatDenseRestoreArrayRead_MPIDense(Mat A,const PetscScalar *array[])
2758572280aSBarry Smith {
2768572280aSBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
2778572280aSBarry Smith   PetscErrorCode ierr;
2788572280aSBarry Smith 
2798572280aSBarry Smith   PetscFunctionBegin;
2808572280aSBarry Smith   ierr = MatDenseRestoreArrayRead(a->A,array);CHKERRQ(ierr);
2818572280aSBarry Smith   PetscFunctionReturn(0);
2828572280aSBarry Smith }
2838572280aSBarry Smith 
284dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode)
2858965ea79SLois Curfman McInnes {
28639ddd567SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
287ce94432eSBarry Smith   MPI_Comm       comm;
288dfbe8321SBarry Smith   PetscErrorCode ierr;
28913f74950SBarry Smith   PetscInt       nstash,reallocs;
2908965ea79SLois Curfman McInnes   InsertMode     addv;
2918965ea79SLois Curfman McInnes 
2923a40ed3dSBarry Smith   PetscFunctionBegin;
293ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)mat,&comm);CHKERRQ(ierr);
2948965ea79SLois Curfman McInnes   /* make sure all processors are either in INSERTMODE or ADDMODE */
295b2566f29SBarry Smith   ierr = MPIU_Allreduce((PetscEnum*)&mat->insertmode,(PetscEnum*)&addv,1,MPIU_ENUM,MPI_BOR,comm);CHKERRQ(ierr);
296ce94432eSBarry Smith   if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ARG_WRONGSTATE,"Cannot mix adds/inserts on different procs");
297e0fa3b82SLois Curfman McInnes   mat->insertmode = addv; /* in case this processor had no cache */
2988965ea79SLois Curfman McInnes 
299d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
3008798bf22SSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
301ae15b995SBarry Smith   ierr = PetscInfo2(mdn->A,"Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
3023a40ed3dSBarry Smith   PetscFunctionReturn(0);
3038965ea79SLois Curfman McInnes }
3048965ea79SLois Curfman McInnes 
305dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode)
3068965ea79SLois Curfman McInnes {
30739ddd567SLois Curfman McInnes   Mat_MPIDense   *mdn=(Mat_MPIDense*)mat->data;
3086849ba73SBarry Smith   PetscErrorCode ierr;
30913f74950SBarry Smith   PetscInt       i,*row,*col,flg,j,rstart,ncols;
31013f74950SBarry Smith   PetscMPIInt    n;
31187828ca2SBarry Smith   PetscScalar    *val;
3128965ea79SLois Curfman McInnes 
3133a40ed3dSBarry Smith   PetscFunctionBegin;
3148965ea79SLois Curfman McInnes   /*  wait on receives */
3157ef1d9bdSSatish Balay   while (1) {
3168798bf22SSatish Balay     ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
3177ef1d9bdSSatish Balay     if (!flg) break;
3188965ea79SLois Curfman McInnes 
3197ef1d9bdSSatish Balay     for (i=0; i<n;) {
3207ef1d9bdSSatish Balay       /* Now identify the consecutive vals belonging to the same row */
3212205254eSKarl Rupp       for (j=i,rstart=row[j]; j<n; j++) {
3222205254eSKarl Rupp         if (row[j] != rstart) break;
3232205254eSKarl Rupp       }
3247ef1d9bdSSatish Balay       if (j < n) ncols = j-i;
3257ef1d9bdSSatish Balay       else       ncols = n-i;
3267ef1d9bdSSatish Balay       /* Now assemble all these values with a single function call */
3274b4eb8d3SJed Brown       ierr = MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr);
3287ef1d9bdSSatish Balay       i    = j;
3298965ea79SLois Curfman McInnes     }
3307ef1d9bdSSatish Balay   }
3318798bf22SSatish Balay   ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
3328965ea79SLois Curfman McInnes 
33339ddd567SLois Curfman McInnes   ierr = MatAssemblyBegin(mdn->A,mode);CHKERRQ(ierr);
33439ddd567SLois Curfman McInnes   ierr = MatAssemblyEnd(mdn->A,mode);CHKERRQ(ierr);
3358965ea79SLois Curfman McInnes 
3366d4a8577SBarry Smith   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
33739ddd567SLois Curfman McInnes     ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr);
3388965ea79SLois Curfman McInnes   }
3393a40ed3dSBarry Smith   PetscFunctionReturn(0);
3408965ea79SLois Curfman McInnes }
3418965ea79SLois Curfman McInnes 
342dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIDense(Mat A)
3438965ea79SLois Curfman McInnes {
344dfbe8321SBarry Smith   PetscErrorCode ierr;
34539ddd567SLois Curfman McInnes   Mat_MPIDense   *l = (Mat_MPIDense*)A->data;
3463a40ed3dSBarry Smith 
3473a40ed3dSBarry Smith   PetscFunctionBegin;
3483a40ed3dSBarry Smith   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
3493a40ed3dSBarry Smith   PetscFunctionReturn(0);
3508965ea79SLois Curfman McInnes }
3518965ea79SLois Curfman McInnes 
3528965ea79SLois Curfman McInnes /* the code does not do the diagonal entries correctly unless the
3538965ea79SLois Curfman McInnes    matrix is square and the column and row owerships are identical.
3548965ea79SLois Curfman McInnes    This is a BUG. The only way to fix it seems to be to access
3553501a2bdSLois Curfman McInnes    mdn->A and mdn->B directly and not through the MatZeroRows()
3568965ea79SLois Curfman McInnes    routine.
3578965ea79SLois Curfman McInnes */
3582b40b63fSBarry Smith PetscErrorCode MatZeroRows_MPIDense(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b)
3598965ea79SLois Curfman McInnes {
36039ddd567SLois Curfman McInnes   Mat_MPIDense      *l = (Mat_MPIDense*)A->data;
3616849ba73SBarry Smith   PetscErrorCode    ierr;
362d0f46423SBarry Smith   PetscInt          i,*owners = A->rmap->range;
36376ec1555SBarry Smith   PetscInt          *sizes,j,idx,nsends;
36413f74950SBarry Smith   PetscInt          nmax,*svalues,*starts,*owner,nrecvs;
3657adad957SLisandro Dalcin   PetscInt          *rvalues,tag = ((PetscObject)A)->tag,count,base,slen,*source;
36613f74950SBarry Smith   PetscInt          *lens,*lrows,*values;
36713f74950SBarry Smith   PetscMPIInt       n,imdex,rank = l->rank,size = l->size;
368ce94432eSBarry Smith   MPI_Comm          comm;
3698965ea79SLois Curfman McInnes   MPI_Request       *send_waits,*recv_waits;
3708965ea79SLois Curfman McInnes   MPI_Status        recv_status,*send_status;
371ace3abfcSBarry Smith   PetscBool         found;
37297b48c8fSBarry Smith   const PetscScalar *xx;
37397b48c8fSBarry Smith   PetscScalar       *bb;
3748965ea79SLois Curfman McInnes 
3753a40ed3dSBarry Smith   PetscFunctionBegin;
376ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
377ce94432eSBarry Smith   if (A->rmap->N != A->cmap->N) SETERRQ(comm,PETSC_ERR_SUP,"Only handles square matrices");
378b9679d65SBarry Smith   if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only handles matrices with identical column and row ownership");
3798965ea79SLois Curfman McInnes   /*  first count number of contributors to each processor */
380f628708eSJed Brown   ierr = PetscCalloc1(2*size,&sizes);CHKERRQ(ierr);
381037dbc42SBarry Smith   ierr = PetscMalloc1(N+1,&owner);CHKERRQ(ierr);  /* see note*/
3828965ea79SLois Curfman McInnes   for (i=0; i<N; i++) {
3838965ea79SLois Curfman McInnes     idx   = rows[i];
38435d8aa7fSBarry Smith     found = PETSC_FALSE;
3858965ea79SLois Curfman McInnes     for (j=0; j<size; j++) {
3868965ea79SLois Curfman McInnes       if (idx >= owners[j] && idx < owners[j+1]) {
38776ec1555SBarry Smith         sizes[2*j]++; sizes[2*j+1] = 1; owner[i] = j; found = PETSC_TRUE; break;
3888965ea79SLois Curfman McInnes       }
3898965ea79SLois Curfman McInnes     }
390e32f2f54SBarry Smith     if (!found) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Index out of range");
3918965ea79SLois Curfman McInnes   }
3922205254eSKarl Rupp   nsends = 0;
39376ec1555SBarry Smith   for (i=0; i<size; i++) nsends += sizes[2*i+1];
3948965ea79SLois Curfman McInnes 
3958965ea79SLois Curfman McInnes   /* inform other processors of number of messages and max length*/
39676ec1555SBarry Smith   ierr = PetscMaxSum(comm,sizes,&nmax,&nrecvs);CHKERRQ(ierr);
3978965ea79SLois Curfman McInnes 
3988965ea79SLois Curfman McInnes   /* post receives:   */
399785e854fSJed Brown   ierr = PetscMalloc1((nrecvs+1)*(nmax+1),&rvalues);CHKERRQ(ierr);
400854ce69bSBarry Smith   ierr = PetscMalloc1(nrecvs+1,&recv_waits);CHKERRQ(ierr);
4018965ea79SLois Curfman McInnes   for (i=0; i<nrecvs; i++) {
40213f74950SBarry Smith     ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr);
4038965ea79SLois Curfman McInnes   }
4048965ea79SLois Curfman McInnes 
4058965ea79SLois Curfman McInnes   /* do sends:
4068965ea79SLois Curfman McInnes       1) starts[i] gives the starting index in svalues for stuff going to
4078965ea79SLois Curfman McInnes          the ith processor
4088965ea79SLois Curfman McInnes   */
409854ce69bSBarry Smith   ierr = PetscMalloc1(N+1,&svalues);CHKERRQ(ierr);
410854ce69bSBarry Smith   ierr = PetscMalloc1(nsends+1,&send_waits);CHKERRQ(ierr);
411854ce69bSBarry Smith   ierr = PetscMalloc1(size+1,&starts);CHKERRQ(ierr);
4128965ea79SLois Curfman McInnes 
4138965ea79SLois Curfman McInnes   starts[0] = 0;
41476ec1555SBarry Smith   for (i=1; i<size; i++) starts[i] = starts[i-1] + sizes[2*i-2];
4152205254eSKarl Rupp   for (i=0; i<N; i++) svalues[starts[owner[i]]++] = rows[i];
4162205254eSKarl Rupp 
4172205254eSKarl Rupp   starts[0] = 0;
41876ec1555SBarry Smith   for (i=1; i<size+1; i++) starts[i] = starts[i-1] + sizes[2*i-2];
4198965ea79SLois Curfman McInnes   count = 0;
4208965ea79SLois Curfman McInnes   for (i=0; i<size; i++) {
42176ec1555SBarry Smith     if (sizes[2*i+1]) {
42276ec1555SBarry Smith       ierr = MPI_Isend(svalues+starts[i],sizes[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr);
4238965ea79SLois Curfman McInnes     }
4248965ea79SLois Curfman McInnes   }
425606d414cSSatish Balay   ierr = PetscFree(starts);CHKERRQ(ierr);
4268965ea79SLois Curfman McInnes 
4278965ea79SLois Curfman McInnes   base = owners[rank];
4288965ea79SLois Curfman McInnes 
4298965ea79SLois Curfman McInnes   /*  wait on receives */
430dcca6d9dSJed Brown   ierr  = PetscMalloc2(nrecvs,&lens,nrecvs,&source);CHKERRQ(ierr);
43174ed9c26SBarry Smith   count = nrecvs;
43274ed9c26SBarry Smith   slen  = 0;
4338965ea79SLois Curfman McInnes   while (count) {
434ca161407SBarry Smith     ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr);
4358965ea79SLois Curfman McInnes     /* unpack receives into our local space */
43613f74950SBarry Smith     ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr);
4372205254eSKarl Rupp 
4388965ea79SLois Curfman McInnes     source[imdex] = recv_status.MPI_SOURCE;
4398965ea79SLois Curfman McInnes     lens[imdex]   = n;
4408965ea79SLois Curfman McInnes     slen += n;
4418965ea79SLois Curfman McInnes     count--;
4428965ea79SLois Curfman McInnes   }
443606d414cSSatish Balay   ierr = PetscFree(recv_waits);CHKERRQ(ierr);
4448965ea79SLois Curfman McInnes 
4458965ea79SLois Curfman McInnes   /* move the data into the send scatter */
446854ce69bSBarry Smith   ierr  = PetscMalloc1(slen+1,&lrows);CHKERRQ(ierr);
4478965ea79SLois Curfman McInnes   count = 0;
4488965ea79SLois Curfman McInnes   for (i=0; i<nrecvs; i++) {
4498965ea79SLois Curfman McInnes     values = rvalues + i*nmax;
4508965ea79SLois Curfman McInnes     for (j=0; j<lens[i]; j++) {
4518965ea79SLois Curfman McInnes       lrows[count++] = values[j] - base;
4528965ea79SLois Curfman McInnes     }
4538965ea79SLois Curfman McInnes   }
454606d414cSSatish Balay   ierr = PetscFree(rvalues);CHKERRQ(ierr);
45574ed9c26SBarry Smith   ierr = PetscFree2(lens,source);CHKERRQ(ierr);
456606d414cSSatish Balay   ierr = PetscFree(owner);CHKERRQ(ierr);
45776ec1555SBarry Smith   ierr = PetscFree(sizes);CHKERRQ(ierr);
4588965ea79SLois Curfman McInnes 
45997b48c8fSBarry Smith   /* fix right hand side if needed */
46097b48c8fSBarry Smith   if (x && b) {
46197b48c8fSBarry Smith     ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr);
46297b48c8fSBarry Smith     ierr = VecGetArray(b,&bb);CHKERRQ(ierr);
46397b48c8fSBarry Smith     for (i=0; i<slen; i++) {
46497b48c8fSBarry Smith       bb[lrows[i]] = diag*xx[lrows[i]];
46597b48c8fSBarry Smith     }
46697b48c8fSBarry Smith     ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr);
46797b48c8fSBarry Smith     ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr);
46897b48c8fSBarry Smith   }
46997b48c8fSBarry Smith 
4708965ea79SLois Curfman McInnes   /* actually zap the local rows */
471b9679d65SBarry Smith   ierr = MatZeroRows(l->A,slen,lrows,0.0,0,0);CHKERRQ(ierr);
472e2eb51b1SBarry Smith   if (diag != 0.0) {
473b9679d65SBarry Smith     Mat_SeqDense *ll = (Mat_SeqDense*)l->A->data;
474b9679d65SBarry Smith     PetscInt     m   = ll->lda, i;
475b9679d65SBarry Smith 
476b9679d65SBarry Smith     for (i=0; i<slen; i++) {
477b9679d65SBarry Smith       ll->v[lrows[i] + m*(A->cmap->rstart + lrows[i])] = diag;
478b9679d65SBarry Smith     }
479b9679d65SBarry Smith   }
480606d414cSSatish Balay   ierr = PetscFree(lrows);CHKERRQ(ierr);
4818965ea79SLois Curfman McInnes 
4828965ea79SLois Curfman McInnes   /* wait on sends */
4838965ea79SLois Curfman McInnes   if (nsends) {
484785e854fSJed Brown     ierr = PetscMalloc1(nsends,&send_status);CHKERRQ(ierr);
485ca161407SBarry Smith     ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr);
486606d414cSSatish Balay     ierr = PetscFree(send_status);CHKERRQ(ierr);
4878965ea79SLois Curfman McInnes   }
488606d414cSSatish Balay   ierr = PetscFree(send_waits);CHKERRQ(ierr);
489606d414cSSatish Balay   ierr = PetscFree(svalues);CHKERRQ(ierr);
4903a40ed3dSBarry Smith   PetscFunctionReturn(0);
4918965ea79SLois Curfman McInnes }
4928965ea79SLois Curfman McInnes 
493cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMult_SeqDense(Mat,Vec,Vec);
494cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultAdd_SeqDense(Mat,Vec,Vec,Vec);
495cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTranspose_SeqDense(Mat,Vec,Vec);
496cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTransposeAdd_SeqDense(Mat,Vec,Vec,Vec);
497cc2e6a90SBarry Smith 
498dfbe8321SBarry Smith PetscErrorCode MatMult_MPIDense(Mat mat,Vec xx,Vec yy)
4998965ea79SLois Curfman McInnes {
50039ddd567SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
501dfbe8321SBarry Smith   PetscErrorCode ierr;
502c456f294SBarry Smith 
5033a40ed3dSBarry Smith   PetscFunctionBegin;
504ca9f406cSSatish Balay   ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
505ca9f406cSSatish Balay   ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
506cc2e6a90SBarry Smith   ierr = MatMult_SeqDense(mdn->A,mdn->lvec,yy);CHKERRQ(ierr);
5073a40ed3dSBarry Smith   PetscFunctionReturn(0);
5088965ea79SLois Curfman McInnes }
5098965ea79SLois Curfman McInnes 
510dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz)
5118965ea79SLois Curfman McInnes {
51239ddd567SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
513dfbe8321SBarry Smith   PetscErrorCode ierr;
514c456f294SBarry Smith 
5153a40ed3dSBarry Smith   PetscFunctionBegin;
516ca9f406cSSatish Balay   ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
517ca9f406cSSatish Balay   ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
518cc2e6a90SBarry Smith   ierr = MatMultAdd_SeqDense(mdn->A,mdn->lvec,yy,zz);CHKERRQ(ierr);
5193a40ed3dSBarry Smith   PetscFunctionReturn(0);
5208965ea79SLois Curfman McInnes }
5218965ea79SLois Curfman McInnes 
522dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIDense(Mat A,Vec xx,Vec yy)
523096963f5SLois Curfman McInnes {
524096963f5SLois Curfman McInnes   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
525dfbe8321SBarry Smith   PetscErrorCode ierr;
52687828ca2SBarry Smith   PetscScalar    zero = 0.0;
527096963f5SLois Curfman McInnes 
5283a40ed3dSBarry Smith   PetscFunctionBegin;
5292dcb1b2aSMatthew Knepley   ierr = VecSet(yy,zero);CHKERRQ(ierr);
530cc2e6a90SBarry Smith   ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr);
531ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
532ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
5333a40ed3dSBarry Smith   PetscFunctionReturn(0);
534096963f5SLois Curfman McInnes }
535096963f5SLois Curfman McInnes 
536dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz)
537096963f5SLois Curfman McInnes {
538096963f5SLois Curfman McInnes   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
539dfbe8321SBarry Smith   PetscErrorCode ierr;
540096963f5SLois Curfman McInnes 
5413a40ed3dSBarry Smith   PetscFunctionBegin;
5423501a2bdSLois Curfman McInnes   ierr = VecCopy(yy,zz);CHKERRQ(ierr);
543cc2e6a90SBarry Smith   ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr);
544ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
545ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
5463a40ed3dSBarry Smith   PetscFunctionReturn(0);
547096963f5SLois Curfman McInnes }
548096963f5SLois Curfman McInnes 
549dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIDense(Mat A,Vec v)
5508965ea79SLois Curfman McInnes {
55139ddd567SLois Curfman McInnes   Mat_MPIDense   *a    = (Mat_MPIDense*)A->data;
552096963f5SLois Curfman McInnes   Mat_SeqDense   *aloc = (Mat_SeqDense*)a->A->data;
553dfbe8321SBarry Smith   PetscErrorCode ierr;
554d0f46423SBarry Smith   PetscInt       len,i,n,m = A->rmap->n,radd;
55587828ca2SBarry Smith   PetscScalar    *x,zero = 0.0;
556ed3cc1f0SBarry Smith 
5573a40ed3dSBarry Smith   PetscFunctionBegin;
5582dcb1b2aSMatthew Knepley   ierr = VecSet(v,zero);CHKERRQ(ierr);
5591ebc52fbSHong Zhang   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
560096963f5SLois Curfman McInnes   ierr = VecGetSize(v,&n);CHKERRQ(ierr);
561e32f2f54SBarry Smith   if (n != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec");
562d0f46423SBarry Smith   len  = PetscMin(a->A->rmap->n,a->A->cmap->n);
563d0f46423SBarry Smith   radd = A->rmap->rstart*m;
56444cd7ae7SLois Curfman McInnes   for (i=0; i<len; i++) {
565096963f5SLois Curfman McInnes     x[i] = aloc->v[radd + i*m + i];
566096963f5SLois Curfman McInnes   }
5671ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
5683a40ed3dSBarry Smith   PetscFunctionReturn(0);
5698965ea79SLois Curfman McInnes }
5708965ea79SLois Curfman McInnes 
571dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIDense(Mat mat)
5728965ea79SLois Curfman McInnes {
5733501a2bdSLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
574dfbe8321SBarry Smith   PetscErrorCode ierr;
575ed3cc1f0SBarry Smith 
5763a40ed3dSBarry Smith   PetscFunctionBegin;
577aa482453SBarry Smith #if defined(PETSC_USE_LOG)
578d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D, Cols=%D",mat->rmap->N,mat->cmap->N);
5798965ea79SLois Curfman McInnes #endif
5808798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
5816bf464f9SBarry Smith   ierr = MatDestroy(&mdn->A);CHKERRQ(ierr);
5826bf464f9SBarry Smith   ierr = VecDestroy(&mdn->lvec);CHKERRQ(ierr);
5836bf464f9SBarry Smith   ierr = VecScatterDestroy(&mdn->Mvctx);CHKERRQ(ierr);
58401b82886SBarry Smith 
585bf0cc555SLisandro Dalcin   ierr = PetscFree(mat->data);CHKERRQ(ierr);
586dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
5878baccfbdSHong Zhang 
588*49a6ff4bSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",NULL);CHKERRQ(ierr);
5898baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",NULL);CHKERRQ(ierr);
5908572280aSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",NULL);CHKERRQ(ierr);
5918572280aSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",NULL);CHKERRQ(ierr);
5928572280aSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",NULL);CHKERRQ(ierr);
593d3042a70SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",NULL);CHKERRQ(ierr);
594d3042a70SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",NULL);CHKERRQ(ierr);
5958baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
5968baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",NULL);CHKERRQ(ierr);
5978baccfbdSHong Zhang #endif
598bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",NULL);CHKERRQ(ierr);
599bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMult_mpiaij_mpidense_C",NULL);CHKERRQ(ierr);
600bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C",NULL);CHKERRQ(ierr);
601bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C",NULL);CHKERRQ(ierr);
6028baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMult_mpiaij_mpidense_C",NULL);CHKERRQ(ierr);
6038baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultSymbolic_mpiaij_mpidense_C",NULL);CHKERRQ(ierr);
6048baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultNumeric_mpiaij_mpidense_C",NULL);CHKERRQ(ierr);
60586aefd0dSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",NULL);CHKERRQ(ierr);
60686aefd0dSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",NULL);CHKERRQ(ierr);
6073a40ed3dSBarry Smith   PetscFunctionReturn(0);
6088965ea79SLois Curfman McInnes }
60939ddd567SLois Curfman McInnes 
6106849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_Binary(Mat mat,PetscViewer viewer)
6118965ea79SLois Curfman McInnes {
61239ddd567SLois Curfman McInnes   Mat_MPIDense      *mdn = (Mat_MPIDense*)mat->data;
613dfbe8321SBarry Smith   PetscErrorCode    ierr;
614aa05aa95SBarry Smith   PetscViewerFormat format;
615aa05aa95SBarry Smith   int               fd;
616d0f46423SBarry Smith   PetscInt          header[4],mmax,N = mat->cmap->N,i,j,m,k;
617aa05aa95SBarry Smith   PetscMPIInt       rank,tag  = ((PetscObject)viewer)->tag,size;
618578230a0SSatish Balay   PetscScalar       *work,*v,*vv;
619aa05aa95SBarry Smith   Mat_SeqDense      *a = (Mat_SeqDense*)mdn->A->data;
6207056b6fcSBarry Smith 
6213a40ed3dSBarry Smith   PetscFunctionBegin;
62239ddd567SLois Curfman McInnes   if (mdn->size == 1) {
62339ddd567SLois Curfman McInnes     ierr = MatView(mdn->A,viewer);CHKERRQ(ierr);
624aa05aa95SBarry Smith   } else {
625aa05aa95SBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
626ce94432eSBarry Smith     ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr);
627ce94432eSBarry Smith     ierr = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&size);CHKERRQ(ierr);
628aa05aa95SBarry Smith 
629aa05aa95SBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
630f4403165SShri Abhyankar     if (format == PETSC_VIEWER_NATIVE) {
631aa05aa95SBarry Smith 
632aa05aa95SBarry Smith       if (!rank) {
633aa05aa95SBarry Smith         /* store the matrix as a dense matrix */
6340700a824SBarry Smith         header[0] = MAT_FILE_CLASSID;
635d0f46423SBarry Smith         header[1] = mat->rmap->N;
636aa05aa95SBarry Smith         header[2] = N;
637aa05aa95SBarry Smith         header[3] = MATRIX_BINARY_FORMAT_DENSE;
638aa05aa95SBarry Smith         ierr      = PetscBinaryWrite(fd,header,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
639aa05aa95SBarry Smith 
640aa05aa95SBarry Smith         /* get largest work array needed for transposing array */
641d0f46423SBarry Smith         mmax = mat->rmap->n;
642aa05aa95SBarry Smith         for (i=1; i<size; i++) {
643d0f46423SBarry Smith           mmax = PetscMax(mmax,mat->rmap->range[i+1] - mat->rmap->range[i]);
6448965ea79SLois Curfman McInnes         }
645785e854fSJed Brown         ierr = PetscMalloc1(mmax*N,&work);CHKERRQ(ierr);
646aa05aa95SBarry Smith 
647aa05aa95SBarry Smith         /* write out local array, by rows */
648d0f46423SBarry Smith         m = mat->rmap->n;
649aa05aa95SBarry Smith         v = a->v;
650aa05aa95SBarry Smith         for (j=0; j<N; j++) {
651aa05aa95SBarry Smith           for (i=0; i<m; i++) {
652578230a0SSatish Balay             work[j + i*N] = *v++;
653aa05aa95SBarry Smith           }
654aa05aa95SBarry Smith         }
655aa05aa95SBarry Smith         ierr = PetscBinaryWrite(fd,work,m*N,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr);
656aa05aa95SBarry Smith         /* get largest work array to receive messages from other processes, excludes process zero */
657aa05aa95SBarry Smith         mmax = 0;
658aa05aa95SBarry Smith         for (i=1; i<size; i++) {
659d0f46423SBarry Smith           mmax = PetscMax(mmax,mat->rmap->range[i+1] - mat->rmap->range[i]);
660aa05aa95SBarry Smith         }
661785e854fSJed Brown         ierr = PetscMalloc1(mmax*N,&vv);CHKERRQ(ierr);
662aa05aa95SBarry Smith         for (k = 1; k < size; k++) {
663f8009846SMatthew Knepley           v    = vv;
664d0f46423SBarry Smith           m    = mat->rmap->range[k+1] - mat->rmap->range[k];
665ce94432eSBarry Smith           ierr = MPIULong_Recv(v,m*N,MPIU_SCALAR,k,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
666aa05aa95SBarry Smith 
667aa05aa95SBarry Smith           for (j = 0; j < N; j++) {
668aa05aa95SBarry Smith             for (i = 0; i < m; i++) {
669578230a0SSatish Balay               work[j + i*N] = *v++;
670aa05aa95SBarry Smith             }
671aa05aa95SBarry Smith           }
672aa05aa95SBarry Smith           ierr = PetscBinaryWrite(fd,work,m*N,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr);
673aa05aa95SBarry Smith         }
674aa05aa95SBarry Smith         ierr = PetscFree(work);CHKERRQ(ierr);
675578230a0SSatish Balay         ierr = PetscFree(vv);CHKERRQ(ierr);
676aa05aa95SBarry Smith       } else {
677ce94432eSBarry Smith         ierr = MPIULong_Send(a->v,mat->rmap->n*mat->cmap->N,MPIU_SCALAR,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
678aa05aa95SBarry Smith       }
6796a9046bcSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"To store a parallel dense matrix you must first call PetscViewerPushFormat(viewer,PETSC_VIEWER_NATIVE)");
680aa05aa95SBarry Smith   }
6813a40ed3dSBarry Smith   PetscFunctionReturn(0);
6828965ea79SLois Curfman McInnes }
6838965ea79SLois Curfman McInnes 
6847da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqDense(Mat,PetscViewer);
6859804daf3SBarry Smith #include <petscdraw.h>
6866849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
6878965ea79SLois Curfman McInnes {
68839ddd567SLois Curfman McInnes   Mat_MPIDense      *mdn = (Mat_MPIDense*)mat->data;
689dfbe8321SBarry Smith   PetscErrorCode    ierr;
6907da1fb6eSBarry Smith   PetscMPIInt       rank = mdn->rank;
69119fd82e9SBarry Smith   PetscViewerType   vtype;
692ace3abfcSBarry Smith   PetscBool         iascii,isdraw;
693b0a32e0cSBarry Smith   PetscViewer       sviewer;
694f3ef73ceSBarry Smith   PetscViewerFormat format;
6958965ea79SLois Curfman McInnes 
6963a40ed3dSBarry Smith   PetscFunctionBegin;
697251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
698251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
69932077d6dSBarry Smith   if (iascii) {
700b0a32e0cSBarry Smith     ierr = PetscViewerGetType(viewer,&vtype);CHKERRQ(ierr);
701b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
702456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
7034e220ebcSLois Curfman McInnes       MatInfo info;
704888f2ed8SSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
7051575c14dSBarry Smith       ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr);
7067b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"  [%d] local rows %D nz %D nz alloced %D mem %D \n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory);CHKERRQ(ierr);
707b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
7081575c14dSBarry Smith       ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr);
7095d00a290SHong Zhang       ierr = VecScatterView(mdn->Mvctx,viewer);CHKERRQ(ierr);
7103a40ed3dSBarry Smith       PetscFunctionReturn(0);
711fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
7123a40ed3dSBarry Smith       PetscFunctionReturn(0);
7138965ea79SLois Curfman McInnes     }
714f1af5d2fSBarry Smith   } else if (isdraw) {
715b0a32e0cSBarry Smith     PetscDraw draw;
716ace3abfcSBarry Smith     PetscBool isnull;
717f1af5d2fSBarry Smith 
718b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
719b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr);
720f1af5d2fSBarry Smith     if (isnull) PetscFunctionReturn(0);
721f1af5d2fSBarry Smith   }
72277ed5343SBarry Smith 
7237da1fb6eSBarry Smith   {
7248965ea79SLois Curfman McInnes     /* assemble the entire matrix onto first processor. */
7258965ea79SLois Curfman McInnes     Mat         A;
726d0f46423SBarry Smith     PetscInt    M = mat->rmap->N,N = mat->cmap->N,m,row,i,nz;
727ba8c8a56SBarry Smith     PetscInt    *cols;
728ba8c8a56SBarry Smith     PetscScalar *vals;
7298965ea79SLois Curfman McInnes 
730ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr);
7318965ea79SLois Curfman McInnes     if (!rank) {
732f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
7333a40ed3dSBarry Smith     } else {
734f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
7358965ea79SLois Curfman McInnes     }
7367adad957SLisandro Dalcin     /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */
737878740d9SKris Buschelman     ierr = MatSetType(A,MATMPIDENSE);CHKERRQ(ierr);
7380298fd71SBarry Smith     ierr = MatMPIDenseSetPreallocation(A,NULL);CHKERRQ(ierr);
7393bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr);
7408965ea79SLois Curfman McInnes 
74139ddd567SLois Curfman McInnes     /* Copy the matrix ... This isn't the most efficient means,
74239ddd567SLois Curfman McInnes        but it's quick for now */
74351022da4SBarry Smith     A->insertmode = INSERT_VALUES;
7442205254eSKarl Rupp 
7452205254eSKarl Rupp     row = mat->rmap->rstart;
7462205254eSKarl Rupp     m   = mdn->A->rmap->n;
7478965ea79SLois Curfman McInnes     for (i=0; i<m; i++) {
748ba8c8a56SBarry Smith       ierr = MatGetRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr);
749ba8c8a56SBarry Smith       ierr = MatSetValues_MPIDense(A,1,&row,nz,cols,vals,INSERT_VALUES);CHKERRQ(ierr);
750ba8c8a56SBarry Smith       ierr = MatRestoreRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr);
75139ddd567SLois Curfman McInnes       row++;
7528965ea79SLois Curfman McInnes     }
7538965ea79SLois Curfman McInnes 
7546d4a8577SBarry Smith     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
7556d4a8577SBarry Smith     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
7563f08860eSBarry Smith     ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr);
757b9b97703SBarry Smith     if (!rank) {
7581a9d3c3cSBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPIDense*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr);
7597da1fb6eSBarry Smith       ierr = MatView_SeqDense(((Mat_MPIDense*)(A->data))->A,sviewer);CHKERRQ(ierr);
7608965ea79SLois Curfman McInnes     }
7613f08860eSBarry Smith     ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr);
762b0a32e0cSBarry Smith     ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
7636bf464f9SBarry Smith     ierr = MatDestroy(&A);CHKERRQ(ierr);
7648965ea79SLois Curfman McInnes   }
7653a40ed3dSBarry Smith   PetscFunctionReturn(0);
7668965ea79SLois Curfman McInnes }
7678965ea79SLois Curfman McInnes 
768dfbe8321SBarry Smith PetscErrorCode MatView_MPIDense(Mat mat,PetscViewer viewer)
7698965ea79SLois Curfman McInnes {
770dfbe8321SBarry Smith   PetscErrorCode ierr;
771ace3abfcSBarry Smith   PetscBool      iascii,isbinary,isdraw,issocket;
7728965ea79SLois Curfman McInnes 
773433994e6SBarry Smith   PetscFunctionBegin;
774251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
775251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
776251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr);
777251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
7780f5bd95cSBarry Smith 
77932077d6dSBarry Smith   if (iascii || issocket || isdraw) {
780f1af5d2fSBarry Smith     ierr = MatView_MPIDense_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
7810f5bd95cSBarry Smith   } else if (isbinary) {
7823a40ed3dSBarry Smith     ierr = MatView_MPIDense_Binary(mat,viewer);CHKERRQ(ierr);
78311aeaf0aSBarry Smith   }
7843a40ed3dSBarry Smith   PetscFunctionReturn(0);
7858965ea79SLois Curfman McInnes }
7868965ea79SLois Curfman McInnes 
787dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info)
7888965ea79SLois Curfman McInnes {
7893501a2bdSLois Curfman McInnes   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
7903501a2bdSLois Curfman McInnes   Mat            mdn  = mat->A;
791dfbe8321SBarry Smith   PetscErrorCode ierr;
792329f5518SBarry Smith   PetscReal      isend[5],irecv[5];
7938965ea79SLois Curfman McInnes 
7943a40ed3dSBarry Smith   PetscFunctionBegin;
7954e220ebcSLois Curfman McInnes   info->block_size = 1.0;
7962205254eSKarl Rupp 
7974e220ebcSLois Curfman McInnes   ierr = MatGetInfo(mdn,MAT_LOCAL,info);CHKERRQ(ierr);
7982205254eSKarl Rupp 
7994e220ebcSLois Curfman McInnes   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
8004e220ebcSLois Curfman McInnes   isend[3] = info->memory;  isend[4] = info->mallocs;
8018965ea79SLois Curfman McInnes   if (flag == MAT_LOCAL) {
8024e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
8034e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
8044e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
8054e220ebcSLois Curfman McInnes     info->memory       = isend[3];
8064e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
8078965ea79SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_MAX) {
808b2566f29SBarry Smith     ierr = MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
8092205254eSKarl Rupp 
8104e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
8114e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
8124e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
8134e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
8144e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
8158965ea79SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_SUM) {
816b2566f29SBarry Smith     ierr = MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
8172205254eSKarl Rupp 
8184e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
8194e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
8204e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
8214e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
8224e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
8238965ea79SLois Curfman McInnes   }
8244e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
8254e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
8264e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
8273a40ed3dSBarry Smith   PetscFunctionReturn(0);
8288965ea79SLois Curfman McInnes }
8298965ea79SLois Curfman McInnes 
830ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIDense(Mat A,MatOption op,PetscBool flg)
8318965ea79SLois Curfman McInnes {
83239ddd567SLois Curfman McInnes   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
833dfbe8321SBarry Smith   PetscErrorCode ierr;
8348965ea79SLois Curfman McInnes 
8353a40ed3dSBarry Smith   PetscFunctionBegin;
83612c028f9SKris Buschelman   switch (op) {
837512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
83812c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
83912c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
84043674050SBarry Smith     MatCheckPreallocated(A,1);
8414e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
84212c028f9SKris Buschelman     break;
84312c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
84443674050SBarry Smith     MatCheckPreallocated(A,1);
8454e0d8c25SBarry Smith     a->roworiented = flg;
8464e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
84712c028f9SKris Buschelman     break;
8484e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
84913fa8e87SLisandro Dalcin   case MAT_KEEP_NONZERO_PATTERN:
85012c028f9SKris Buschelman   case MAT_USE_HASH_TABLE:
851290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
85212c028f9SKris Buschelman     break;
85312c028f9SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
8544e0d8c25SBarry Smith     a->donotstash = flg;
85512c028f9SKris Buschelman     break;
85677e54ba9SKris Buschelman   case MAT_SYMMETRIC:
85777e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
8589a4540c5SBarry Smith   case MAT_HERMITIAN:
8599a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
860600fe468SBarry Smith   case MAT_IGNORE_LOWER_TRIANGULAR:
861290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
86277e54ba9SKris Buschelman     break;
86312c028f9SKris Buschelman   default:
864e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %s",MatOptions[op]);
8653a40ed3dSBarry Smith   }
8663a40ed3dSBarry Smith   PetscFunctionReturn(0);
8678965ea79SLois Curfman McInnes }
8688965ea79SLois Curfman McInnes 
8698965ea79SLois Curfman McInnes 
870dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIDense(Mat A,Vec ll,Vec rr)
8715b2fa520SLois Curfman McInnes {
8725b2fa520SLois Curfman McInnes   Mat_MPIDense      *mdn = (Mat_MPIDense*)A->data;
8735b2fa520SLois Curfman McInnes   Mat_SeqDense      *mat = (Mat_SeqDense*)mdn->A->data;
874bca11509SBarry Smith   const PetscScalar *l,*r;
875bca11509SBarry Smith   PetscScalar       x,*v;
876dfbe8321SBarry Smith   PetscErrorCode    ierr;
877d0f46423SBarry Smith   PetscInt          i,j,s2a,s3a,s2,s3,m=mdn->A->rmap->n,n=mdn->A->cmap->n;
8785b2fa520SLois Curfman McInnes 
8795b2fa520SLois Curfman McInnes   PetscFunctionBegin;
88072d926a5SLois Curfman McInnes   ierr = MatGetLocalSize(A,&s2,&s3);CHKERRQ(ierr);
8815b2fa520SLois Curfman McInnes   if (ll) {
88272d926a5SLois Curfman McInnes     ierr = VecGetLocalSize(ll,&s2a);CHKERRQ(ierr);
883e32f2f54SBarry Smith     if (s2a != s2) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vector non-conforming local size, %d != %d.", s2a, s2);
884bca11509SBarry Smith     ierr = VecGetArrayRead(ll,&l);CHKERRQ(ierr);
8855b2fa520SLois Curfman McInnes     for (i=0; i<m; i++) {
8865b2fa520SLois Curfman McInnes       x = l[i];
8875b2fa520SLois Curfman McInnes       v = mat->v + i;
8885b2fa520SLois Curfman McInnes       for (j=0; j<n; j++) { (*v) *= x; v+= m;}
8895b2fa520SLois Curfman McInnes     }
890bca11509SBarry Smith     ierr = VecRestoreArrayRead(ll,&l);CHKERRQ(ierr);
891efee365bSSatish Balay     ierr = PetscLogFlops(n*m);CHKERRQ(ierr);
8925b2fa520SLois Curfman McInnes   }
8935b2fa520SLois Curfman McInnes   if (rr) {
894175be7b4SMatthew Knepley     ierr = VecGetLocalSize(rr,&s3a);CHKERRQ(ierr);
895e32f2f54SBarry Smith     if (s3a != s3) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vec non-conforming local size, %d != %d.", s3a, s3);
896ca9f406cSSatish Balay     ierr = VecScatterBegin(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
897ca9f406cSSatish Balay     ierr = VecScatterEnd(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
898bca11509SBarry Smith     ierr = VecGetArrayRead(mdn->lvec,&r);CHKERRQ(ierr);
8995b2fa520SLois Curfman McInnes     for (i=0; i<n; i++) {
9005b2fa520SLois Curfman McInnes       x = r[i];
9015b2fa520SLois Curfman McInnes       v = mat->v + i*m;
9022205254eSKarl Rupp       for (j=0; j<m; j++) (*v++) *= x;
9035b2fa520SLois Curfman McInnes     }
904bca11509SBarry Smith     ierr = VecRestoreArrayRead(mdn->lvec,&r);CHKERRQ(ierr);
905efee365bSSatish Balay     ierr = PetscLogFlops(n*m);CHKERRQ(ierr);
9065b2fa520SLois Curfman McInnes   }
9075b2fa520SLois Curfman McInnes   PetscFunctionReturn(0);
9085b2fa520SLois Curfman McInnes }
9095b2fa520SLois Curfman McInnes 
910dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIDense(Mat A,NormType type,PetscReal *nrm)
911096963f5SLois Curfman McInnes {
9123501a2bdSLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)A->data;
9133501a2bdSLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)mdn->A->data;
914dfbe8321SBarry Smith   PetscErrorCode ierr;
91513f74950SBarry Smith   PetscInt       i,j;
916329f5518SBarry Smith   PetscReal      sum = 0.0;
91787828ca2SBarry Smith   PetscScalar    *v  = mat->v;
9183501a2bdSLois Curfman McInnes 
9193a40ed3dSBarry Smith   PetscFunctionBegin;
9203501a2bdSLois Curfman McInnes   if (mdn->size == 1) {
921064f8208SBarry Smith     ierr =  MatNorm(mdn->A,type,nrm);CHKERRQ(ierr);
9223501a2bdSLois Curfman McInnes   } else {
9233501a2bdSLois Curfman McInnes     if (type == NORM_FROBENIUS) {
924d0f46423SBarry Smith       for (i=0; i<mdn->A->cmap->n*mdn->A->rmap->n; i++) {
925329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
9263501a2bdSLois Curfman McInnes       }
927b2566f29SBarry Smith       ierr = MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
9288f1a2a5eSBarry Smith       *nrm = PetscSqrtReal(*nrm);
929dc0b31edSSatish Balay       ierr = PetscLogFlops(2.0*mdn->A->cmap->n*mdn->A->rmap->n);CHKERRQ(ierr);
9303a40ed3dSBarry Smith     } else if (type == NORM_1) {
931329f5518SBarry Smith       PetscReal *tmp,*tmp2;
932dcca6d9dSJed Brown       ierr = PetscMalloc2(A->cmap->N,&tmp,A->cmap->N,&tmp2);CHKERRQ(ierr);
93374ed9c26SBarry Smith       ierr = PetscMemzero(tmp,A->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
93474ed9c26SBarry Smith       ierr = PetscMemzero(tmp2,A->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
935064f8208SBarry Smith       *nrm = 0.0;
9363501a2bdSLois Curfman McInnes       v    = mat->v;
937d0f46423SBarry Smith       for (j=0; j<mdn->A->cmap->n; j++) {
938d0f46423SBarry Smith         for (i=0; i<mdn->A->rmap->n; i++) {
93967e560aaSBarry Smith           tmp[j] += PetscAbsScalar(*v);  v++;
9403501a2bdSLois Curfman McInnes         }
9413501a2bdSLois Curfman McInnes       }
942b2566f29SBarry Smith       ierr = MPIU_Allreduce(tmp,tmp2,A->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
943d0f46423SBarry Smith       for (j=0; j<A->cmap->N; j++) {
944064f8208SBarry Smith         if (tmp2[j] > *nrm) *nrm = tmp2[j];
9453501a2bdSLois Curfman McInnes       }
9468627564fSBarry Smith       ierr = PetscFree2(tmp,tmp2);CHKERRQ(ierr);
947d0f46423SBarry Smith       ierr = PetscLogFlops(A->cmap->n*A->rmap->n);CHKERRQ(ierr);
9483a40ed3dSBarry Smith     } else if (type == NORM_INFINITY) { /* max row norm */
949329f5518SBarry Smith       PetscReal ntemp;
9503501a2bdSLois Curfman McInnes       ierr = MatNorm(mdn->A,type,&ntemp);CHKERRQ(ierr);
951b2566f29SBarry Smith       ierr = MPIU_Allreduce(&ntemp,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
952ce94432eSBarry Smith     } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"No support for two norm");
9533501a2bdSLois Curfman McInnes   }
9543a40ed3dSBarry Smith   PetscFunctionReturn(0);
9553501a2bdSLois Curfman McInnes }
9563501a2bdSLois Curfman McInnes 
957fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIDense(Mat A,MatReuse reuse,Mat *matout)
9583501a2bdSLois Curfman McInnes {
9593501a2bdSLois Curfman McInnes   Mat_MPIDense   *a    = (Mat_MPIDense*)A->data;
9603501a2bdSLois Curfman McInnes   Mat_SeqDense   *Aloc = (Mat_SeqDense*)a->A->data;
9613501a2bdSLois Curfman McInnes   Mat            B;
962d0f46423SBarry Smith   PetscInt       M = A->rmap->N,N = A->cmap->N,m,n,*rwork,rstart = A->rmap->rstart;
9636849ba73SBarry Smith   PetscErrorCode ierr;
96413f74950SBarry Smith   PetscInt       j,i;
96587828ca2SBarry Smith   PetscScalar    *v;
9663501a2bdSLois Curfman McInnes 
9673a40ed3dSBarry Smith   PetscFunctionBegin;
968cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) {
969ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
970d0f46423SBarry Smith     ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr);
9717adad957SLisandro Dalcin     ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr);
9720298fd71SBarry Smith     ierr = MatMPIDenseSetPreallocation(B,NULL);CHKERRQ(ierr);
973fc4dec0aSBarry Smith   } else {
974fc4dec0aSBarry Smith     B = *matout;
975fc4dec0aSBarry Smith   }
9763501a2bdSLois Curfman McInnes 
977d0f46423SBarry Smith   m    = a->A->rmap->n; n = a->A->cmap->n; v = Aloc->v;
978785e854fSJed Brown   ierr = PetscMalloc1(m,&rwork);CHKERRQ(ierr);
9793501a2bdSLois Curfman McInnes   for (i=0; i<m; i++) rwork[i] = rstart + i;
9801acff37aSSatish Balay   for (j=0; j<n; j++) {
9813501a2bdSLois Curfman McInnes     ierr = MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES);CHKERRQ(ierr);
9823501a2bdSLois Curfman McInnes     v   += m;
9833501a2bdSLois Curfman McInnes   }
984606d414cSSatish Balay   ierr = PetscFree(rwork);CHKERRQ(ierr);
9856d4a8577SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
9866d4a8577SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
987cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) {
9883501a2bdSLois Curfman McInnes     *matout = B;
9893501a2bdSLois Curfman McInnes   } else {
99028be2f97SBarry Smith     ierr = MatHeaderMerge(A,&B);CHKERRQ(ierr);
9913501a2bdSLois Curfman McInnes   }
9923a40ed3dSBarry Smith   PetscFunctionReturn(0);
993096963f5SLois Curfman McInnes }
994096963f5SLois Curfman McInnes 
99544cd7ae7SLois Curfman McInnes 
9966849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat*);
997d84338a6SBarry Smith extern PetscErrorCode MatScale_MPIDense(Mat,PetscScalar);
9988965ea79SLois Curfman McInnes 
9994994cf47SJed Brown PetscErrorCode MatSetUp_MPIDense(Mat A)
1000273d9f13SBarry Smith {
1001dfbe8321SBarry Smith   PetscErrorCode ierr;
1002273d9f13SBarry Smith 
1003273d9f13SBarry Smith   PetscFunctionBegin;
1004273d9f13SBarry Smith   ierr =  MatMPIDenseSetPreallocation(A,0);CHKERRQ(ierr);
1005273d9f13SBarry Smith   PetscFunctionReturn(0);
1006273d9f13SBarry Smith }
1007273d9f13SBarry Smith 
1008488007eeSBarry Smith PetscErrorCode MatAXPY_MPIDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str)
1009488007eeSBarry Smith {
1010488007eeSBarry Smith   PetscErrorCode ierr;
1011488007eeSBarry Smith   Mat_MPIDense   *A = (Mat_MPIDense*)Y->data, *B = (Mat_MPIDense*)X->data;
1012488007eeSBarry Smith 
1013488007eeSBarry Smith   PetscFunctionBegin;
1014488007eeSBarry Smith   ierr = MatAXPY(A->A,alpha,B->A,str);CHKERRQ(ierr);
1015a3fa217bSJose E. Roman   ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr);
1016488007eeSBarry Smith   PetscFunctionReturn(0);
1017488007eeSBarry Smith }
1018488007eeSBarry Smith 
10197087cfbeSBarry Smith PetscErrorCode  MatConjugate_MPIDense(Mat mat)
1020ba337c44SJed Brown {
1021ba337c44SJed Brown   Mat_MPIDense   *a = (Mat_MPIDense*)mat->data;
1022ba337c44SJed Brown   PetscErrorCode ierr;
1023ba337c44SJed Brown 
1024ba337c44SJed Brown   PetscFunctionBegin;
1025ba337c44SJed Brown   ierr = MatConjugate(a->A);CHKERRQ(ierr);
1026ba337c44SJed Brown   PetscFunctionReturn(0);
1027ba337c44SJed Brown }
1028ba337c44SJed Brown 
1029ba337c44SJed Brown PetscErrorCode MatRealPart_MPIDense(Mat A)
1030ba337c44SJed Brown {
1031ba337c44SJed Brown   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
1032ba337c44SJed Brown   PetscErrorCode ierr;
1033ba337c44SJed Brown 
1034ba337c44SJed Brown   PetscFunctionBegin;
1035ba337c44SJed Brown   ierr = MatRealPart(a->A);CHKERRQ(ierr);
1036ba337c44SJed Brown   PetscFunctionReturn(0);
1037ba337c44SJed Brown }
1038ba337c44SJed Brown 
1039ba337c44SJed Brown PetscErrorCode MatImaginaryPart_MPIDense(Mat A)
1040ba337c44SJed Brown {
1041ba337c44SJed Brown   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
1042ba337c44SJed Brown   PetscErrorCode ierr;
1043ba337c44SJed Brown 
1044ba337c44SJed Brown   PetscFunctionBegin;
1045ba337c44SJed Brown   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
1046ba337c44SJed Brown   PetscFunctionReturn(0);
1047ba337c44SJed Brown }
1048ba337c44SJed Brown 
1049*49a6ff4bSBarry Smith static PetscErrorCode MatGetColumnVector_MPIDense(Mat A,Vec v,PetscInt col)
1050*49a6ff4bSBarry Smith {
1051*49a6ff4bSBarry Smith   PetscErrorCode    ierr;
1052*49a6ff4bSBarry Smith   PetscScalar       *x;
1053*49a6ff4bSBarry Smith   const PetscScalar *a;
1054*49a6ff4bSBarry Smith   PetscInt          lda;
1055*49a6ff4bSBarry Smith 
1056*49a6ff4bSBarry Smith   PetscFunctionBegin;
1057*49a6ff4bSBarry Smith   if (A->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
1058*49a6ff4bSBarry Smith   ierr = MatDenseGetLDA(A,&lda);CHKERRQ(ierr);
1059*49a6ff4bSBarry Smith   ierr = MatDenseGetArrayRead(A,&a);CHKERRQ(ierr);
1060*49a6ff4bSBarry Smith   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
1061*49a6ff4bSBarry Smith   ierr = PetscMemcpy(x,a+col*lda,A->rmap->n*sizeof(PetscScalar));CHKERRQ(ierr);
1062*49a6ff4bSBarry Smith   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
1063*49a6ff4bSBarry Smith   ierr = MatDenseGetArrayRead(A,&a);CHKERRQ(ierr);
1064*49a6ff4bSBarry Smith   PetscFunctionReturn(0);
1065*49a6ff4bSBarry Smith }
1066*49a6ff4bSBarry Smith 
10670716a85fSBarry Smith extern PetscErrorCode MatGetColumnNorms_SeqDense(Mat,NormType,PetscReal*);
10680716a85fSBarry Smith PetscErrorCode MatGetColumnNorms_MPIDense(Mat A,NormType type,PetscReal *norms)
10690716a85fSBarry Smith {
10700716a85fSBarry Smith   PetscErrorCode ierr;
10710716a85fSBarry Smith   PetscInt       i,n;
10720716a85fSBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*) A->data;
10730716a85fSBarry Smith   PetscReal      *work;
10740716a85fSBarry Smith 
10750716a85fSBarry Smith   PetscFunctionBegin;
10760298fd71SBarry Smith   ierr = MatGetSize(A,NULL,&n);CHKERRQ(ierr);
1077785e854fSJed Brown   ierr = PetscMalloc1(n,&work);CHKERRQ(ierr);
10780716a85fSBarry Smith   ierr = MatGetColumnNorms_SeqDense(a->A,type,work);CHKERRQ(ierr);
10790716a85fSBarry Smith   if (type == NORM_2) {
10800716a85fSBarry Smith     for (i=0; i<n; i++) work[i] *= work[i];
10810716a85fSBarry Smith   }
10820716a85fSBarry Smith   if (type == NORM_INFINITY) {
1083b2566f29SBarry Smith     ierr = MPIU_Allreduce(work,norms,n,MPIU_REAL,MPIU_MAX,A->hdr.comm);CHKERRQ(ierr);
10840716a85fSBarry Smith   } else {
1085b2566f29SBarry Smith     ierr = MPIU_Allreduce(work,norms,n,MPIU_REAL,MPIU_SUM,A->hdr.comm);CHKERRQ(ierr);
10860716a85fSBarry Smith   }
10870716a85fSBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
10880716a85fSBarry Smith   if (type == NORM_2) {
10898f1a2a5eSBarry Smith     for (i=0; i<n; i++) norms[i] = PetscSqrtReal(norms[i]);
10900716a85fSBarry Smith   }
10910716a85fSBarry Smith   PetscFunctionReturn(0);
10920716a85fSBarry Smith }
10930716a85fSBarry Smith 
109473a71a0fSBarry Smith static PetscErrorCode  MatSetRandom_MPIDense(Mat x,PetscRandom rctx)
109573a71a0fSBarry Smith {
109673a71a0fSBarry Smith   Mat_MPIDense   *d = (Mat_MPIDense*)x->data;
109773a71a0fSBarry Smith   PetscErrorCode ierr;
109873a71a0fSBarry Smith   PetscScalar    *a;
109973a71a0fSBarry Smith   PetscInt       m,n,i;
110073a71a0fSBarry Smith 
110173a71a0fSBarry Smith   PetscFunctionBegin;
110273a71a0fSBarry Smith   ierr = MatGetSize(d->A,&m,&n);CHKERRQ(ierr);
11038c778c55SBarry Smith   ierr = MatDenseGetArray(d->A,&a);CHKERRQ(ierr);
110473a71a0fSBarry Smith   for (i=0; i<m*n; i++) {
110573a71a0fSBarry Smith     ierr = PetscRandomGetValue(rctx,a+i);CHKERRQ(ierr);
110673a71a0fSBarry Smith   }
11078c778c55SBarry Smith   ierr = MatDenseRestoreArray(d->A,&a);CHKERRQ(ierr);
110873a71a0fSBarry Smith   PetscFunctionReturn(0);
110973a71a0fSBarry Smith }
111073a71a0fSBarry Smith 
1111fd4e9aacSBarry Smith extern PetscErrorCode MatMatMultNumeric_MPIDense(Mat A,Mat,Mat);
1112fd4e9aacSBarry Smith 
11133b49f96aSBarry Smith static PetscErrorCode MatMissingDiagonal_MPIDense(Mat A,PetscBool  *missing,PetscInt *d)
11143b49f96aSBarry Smith {
11153b49f96aSBarry Smith   PetscFunctionBegin;
11163b49f96aSBarry Smith   *missing = PETSC_FALSE;
11173b49f96aSBarry Smith   PetscFunctionReturn(0);
11183b49f96aSBarry Smith }
11193b49f96aSBarry Smith 
1120cc48ffa7SToby Isaac static PetscErrorCode MatMatTransposeMult_MPIDense_MPIDense(Mat,Mat,MatReuse,PetscReal,Mat*);
1121cc48ffa7SToby Isaac static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat,Mat,PetscReal,Mat*);
1122cc48ffa7SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat,Mat,Mat);
1123cc48ffa7SToby Isaac 
11248965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/
112509dc0095SBarry Smith static struct _MatOps MatOps_Values = { MatSetValues_MPIDense,
112609dc0095SBarry Smith                                         MatGetRow_MPIDense,
112709dc0095SBarry Smith                                         MatRestoreRow_MPIDense,
112809dc0095SBarry Smith                                         MatMult_MPIDense,
112997304618SKris Buschelman                                 /*  4*/ MatMultAdd_MPIDense,
11307c922b88SBarry Smith                                         MatMultTranspose_MPIDense,
11317c922b88SBarry Smith                                         MatMultTransposeAdd_MPIDense,
11328965ea79SLois Curfman McInnes                                         0,
113309dc0095SBarry Smith                                         0,
113409dc0095SBarry Smith                                         0,
113597304618SKris Buschelman                                 /* 10*/ 0,
113609dc0095SBarry Smith                                         0,
113709dc0095SBarry Smith                                         0,
113809dc0095SBarry Smith                                         0,
113909dc0095SBarry Smith                                         MatTranspose_MPIDense,
114097304618SKris Buschelman                                 /* 15*/ MatGetInfo_MPIDense,
11416e4ee0c6SHong Zhang                                         MatEqual_MPIDense,
114209dc0095SBarry Smith                                         MatGetDiagonal_MPIDense,
11435b2fa520SLois Curfman McInnes                                         MatDiagonalScale_MPIDense,
114409dc0095SBarry Smith                                         MatNorm_MPIDense,
114597304618SKris Buschelman                                 /* 20*/ MatAssemblyBegin_MPIDense,
114609dc0095SBarry Smith                                         MatAssemblyEnd_MPIDense,
114709dc0095SBarry Smith                                         MatSetOption_MPIDense,
114809dc0095SBarry Smith                                         MatZeroEntries_MPIDense,
1149d519adbfSMatthew Knepley                                 /* 24*/ MatZeroRows_MPIDense,
1150919b68f7SBarry Smith                                         0,
115101b82886SBarry Smith                                         0,
115201b82886SBarry Smith                                         0,
115301b82886SBarry Smith                                         0,
11544994cf47SJed Brown                                 /* 29*/ MatSetUp_MPIDense,
1155273d9f13SBarry Smith                                         0,
115609dc0095SBarry Smith                                         0,
1157c56a70eeSBarry Smith                                         MatGetDiagonalBlock_MPIDense,
11588c778c55SBarry Smith                                         0,
1159d519adbfSMatthew Knepley                                 /* 34*/ MatDuplicate_MPIDense,
116009dc0095SBarry Smith                                         0,
116109dc0095SBarry Smith                                         0,
116209dc0095SBarry Smith                                         0,
116309dc0095SBarry Smith                                         0,
1164d519adbfSMatthew Knepley                                 /* 39*/ MatAXPY_MPIDense,
11657dae84e0SHong Zhang                                         MatCreateSubMatrices_MPIDense,
116609dc0095SBarry Smith                                         0,
116709dc0095SBarry Smith                                         MatGetValues_MPIDense,
116809dc0095SBarry Smith                                         0,
1169d519adbfSMatthew Knepley                                 /* 44*/ 0,
117009dc0095SBarry Smith                                         MatScale_MPIDense,
11717d68702bSBarry Smith                                         MatShift_Basic,
117209dc0095SBarry Smith                                         0,
117309dc0095SBarry Smith                                         0,
117473a71a0fSBarry Smith                                 /* 49*/ MatSetRandom_MPIDense,
117509dc0095SBarry Smith                                         0,
117609dc0095SBarry Smith                                         0,
117709dc0095SBarry Smith                                         0,
117809dc0095SBarry Smith                                         0,
1179d519adbfSMatthew Knepley                                 /* 54*/ 0,
118009dc0095SBarry Smith                                         0,
118109dc0095SBarry Smith                                         0,
118209dc0095SBarry Smith                                         0,
118309dc0095SBarry Smith                                         0,
11847dae84e0SHong Zhang                                 /* 59*/ MatCreateSubMatrix_MPIDense,
1185b9b97703SBarry Smith                                         MatDestroy_MPIDense,
1186b9b97703SBarry Smith                                         MatView_MPIDense,
1187357abbc8SBarry Smith                                         0,
118897304618SKris Buschelman                                         0,
1189d519adbfSMatthew Knepley                                 /* 64*/ 0,
119097304618SKris Buschelman                                         0,
119197304618SKris Buschelman                                         0,
119297304618SKris Buschelman                                         0,
119397304618SKris Buschelman                                         0,
1194d519adbfSMatthew Knepley                                 /* 69*/ 0,
119597304618SKris Buschelman                                         0,
119697304618SKris Buschelman                                         0,
119797304618SKris Buschelman                                         0,
119897304618SKris Buschelman                                         0,
1199d519adbfSMatthew Knepley                                 /* 74*/ 0,
120097304618SKris Buschelman                                         0,
120197304618SKris Buschelman                                         0,
120297304618SKris Buschelman                                         0,
120397304618SKris Buschelman                                         0,
1204d519adbfSMatthew Knepley                                 /* 79*/ 0,
120597304618SKris Buschelman                                         0,
120697304618SKris Buschelman                                         0,
120797304618SKris Buschelman                                         0,
12085bba2384SShri Abhyankar                                 /* 83*/ MatLoad_MPIDense,
1209865e5f61SKris Buschelman                                         0,
1210865e5f61SKris Buschelman                                         0,
1211865e5f61SKris Buschelman                                         0,
1212865e5f61SKris Buschelman                                         0,
1213865e5f61SKris Buschelman                                         0,
12149775878aSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
1215320f2790SHong Zhang                                 /* 89*/ MatMatMult_MPIDense_MPIDense,
1216320f2790SHong Zhang                                         MatMatMultSymbolic_MPIDense_MPIDense,
12179775878aSHong Zhang #else
12189775878aSHong Zhang                                 /* 89*/ 0,
1219865e5f61SKris Buschelman                                         0,
12209775878aSHong Zhang #endif
1221fd4e9aacSBarry Smith                                         MatMatMultNumeric_MPIDense,
12222fbe02b9SBarry Smith                                         0,
1223ba337c44SJed Brown                                         0,
1224d519adbfSMatthew Knepley                                 /* 94*/ 0,
1225cc48ffa7SToby Isaac                                         MatMatTransposeMult_MPIDense_MPIDense,
1226cc48ffa7SToby Isaac                                         MatMatTransposeMultSymbolic_MPIDense_MPIDense,
1227cc48ffa7SToby Isaac                                         MatMatTransposeMultNumeric_MPIDense_MPIDense,
1228ba337c44SJed Brown                                         0,
1229ba337c44SJed Brown                                 /* 99*/ 0,
1230ba337c44SJed Brown                                         0,
1231ba337c44SJed Brown                                         0,
1232ba337c44SJed Brown                                         MatConjugate_MPIDense,
1233ba337c44SJed Brown                                         0,
1234ba337c44SJed Brown                                 /*104*/ 0,
1235ba337c44SJed Brown                                         MatRealPart_MPIDense,
1236ba337c44SJed Brown                                         MatImaginaryPart_MPIDense,
123786d161a7SShri Abhyankar                                         0,
123886d161a7SShri Abhyankar                                         0,
123986d161a7SShri Abhyankar                                 /*109*/ 0,
124086d161a7SShri Abhyankar                                         0,
124186d161a7SShri Abhyankar                                         0,
1242*49a6ff4bSBarry Smith                                         MatGetColumnVector_MPIDense,
12433b49f96aSBarry Smith                                         MatMissingDiagonal_MPIDense,
124486d161a7SShri Abhyankar                                 /*114*/ 0,
124586d161a7SShri Abhyankar                                         0,
124686d161a7SShri Abhyankar                                         0,
124786d161a7SShri Abhyankar                                         0,
124886d161a7SShri Abhyankar                                         0,
124986d161a7SShri Abhyankar                                 /*119*/ 0,
125086d161a7SShri Abhyankar                                         0,
125186d161a7SShri Abhyankar                                         0,
12520716a85fSBarry Smith                                         0,
12530716a85fSBarry Smith                                         0,
12540716a85fSBarry Smith                                 /*124*/ 0,
12553964eb88SJed Brown                                         MatGetColumnNorms_MPIDense,
12563964eb88SJed Brown                                         0,
12573964eb88SJed Brown                                         0,
12583964eb88SJed Brown                                         0,
12593964eb88SJed Brown                                 /*129*/ 0,
1260cb20be35SHong Zhang                                         MatTransposeMatMult_MPIDense_MPIDense,
1261cb20be35SHong Zhang                                         MatTransposeMatMultSymbolic_MPIDense_MPIDense,
1262cb20be35SHong Zhang                                         MatTransposeMatMultNumeric_MPIDense_MPIDense,
12633964eb88SJed Brown                                         0,
12643964eb88SJed Brown                                 /*134*/ 0,
12653964eb88SJed Brown                                         0,
12663964eb88SJed Brown                                         0,
12673964eb88SJed Brown                                         0,
12683964eb88SJed Brown                                         0,
12693964eb88SJed Brown                                 /*139*/ 0,
1270f9426fe0SMark Adams                                         0,
127194e2cb23SJakub Kruzik                                         0,
127294e2cb23SJakub Kruzik                                         0,
127394e2cb23SJakub Kruzik                                         0,
12741ae5eee8SJakub Kruzik                                 /*144*/ MatCreateMPIMatConcatenateSeqMat_MPIDense
1275ba337c44SJed Brown };
12768965ea79SLois Curfman McInnes 
12777087cfbeSBarry Smith PetscErrorCode  MatMPIDenseSetPreallocation_MPIDense(Mat mat,PetscScalar *data)
1278a23d5eceSKris Buschelman {
1279a23d5eceSKris Buschelman   Mat_MPIDense   *a;
1280dfbe8321SBarry Smith   PetscErrorCode ierr;
1281a23d5eceSKris Buschelman 
1282a23d5eceSKris Buschelman   PetscFunctionBegin;
1283430ada49SBarry Smith   if (mat->preallocated) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ARG_WRONGSTATE,"Matrix has already been preallocated");
1284a23d5eceSKris Buschelman   mat->preallocated = PETSC_TRUE;
1285a23d5eceSKris Buschelman   /* Note:  For now, when data is specified above, this assumes the user correctly
1286a23d5eceSKris Buschelman    allocates the local dense storage space.  We should add error checking. */
1287a23d5eceSKris Buschelman 
1288a23d5eceSKris Buschelman   a       = (Mat_MPIDense*)mat->data;
128934ef9618SShri Abhyankar   ierr    = PetscLayoutSetUp(mat->rmap);CHKERRQ(ierr);
129034ef9618SShri Abhyankar   ierr    = PetscLayoutSetUp(mat->cmap);CHKERRQ(ierr);
129134ef9618SShri Abhyankar   a->nvec = mat->cmap->n;
129234ef9618SShri Abhyankar 
1293f69a0ea3SMatthew Knepley   ierr = MatCreate(PETSC_COMM_SELF,&a->A);CHKERRQ(ierr);
1294d0f46423SBarry Smith   ierr = MatSetSizes(a->A,mat->rmap->n,mat->cmap->N,mat->rmap->n,mat->cmap->N);CHKERRQ(ierr);
12955c5985e7SKris Buschelman   ierr = MatSetType(a->A,MATSEQDENSE);CHKERRQ(ierr);
12965c5985e7SKris Buschelman   ierr = MatSeqDenseSetPreallocation(a->A,data);CHKERRQ(ierr);
12973bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr);
1298a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1299a23d5eceSKris Buschelman }
1300a23d5eceSKris Buschelman 
130165b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
1302cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIDense_Elemental(Mat A, MatType newtype,MatReuse reuse,Mat *newmat)
13038baccfbdSHong Zhang {
13048ea901baSHong Zhang   Mat            mat_elemental;
13058ea901baSHong Zhang   PetscErrorCode ierr;
130632d7a744SHong Zhang   PetscScalar    *v;
130732d7a744SHong Zhang   PetscInt       m=A->rmap->n,N=A->cmap->N,rstart=A->rmap->rstart,i,*rows,*cols;
13088ea901baSHong Zhang 
13098baccfbdSHong Zhang   PetscFunctionBegin;
1310378336b6SHong Zhang   if (reuse == MAT_REUSE_MATRIX) {
1311378336b6SHong Zhang     mat_elemental = *newmat;
1312378336b6SHong Zhang     ierr = MatZeroEntries(*newmat);CHKERRQ(ierr);
1313378336b6SHong Zhang   } else {
1314378336b6SHong Zhang     ierr = MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental);CHKERRQ(ierr);
1315378336b6SHong Zhang     ierr = MatSetSizes(mat_elemental,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
1316378336b6SHong Zhang     ierr = MatSetType(mat_elemental,MATELEMENTAL);CHKERRQ(ierr);
1317378336b6SHong Zhang     ierr = MatSetUp(mat_elemental);CHKERRQ(ierr);
131832d7a744SHong Zhang     ierr = MatSetOption(mat_elemental,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr);
1319378336b6SHong Zhang   }
1320378336b6SHong Zhang 
132132d7a744SHong Zhang   ierr = PetscMalloc2(m,&rows,N,&cols);CHKERRQ(ierr);
132232d7a744SHong Zhang   for (i=0; i<N; i++) cols[i] = i;
132332d7a744SHong Zhang   for (i=0; i<m; i++) rows[i] = rstart + i;
13248ea901baSHong Zhang 
13258ea901baSHong Zhang   /* PETSc-Elemental interaface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */
132632d7a744SHong Zhang   ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr);
132732d7a744SHong Zhang   ierr = MatSetValues(mat_elemental,m,rows,N,cols,v,ADD_VALUES);CHKERRQ(ierr);
13288ea901baSHong Zhang   ierr = MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
13298ea901baSHong Zhang   ierr = MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
133032d7a744SHong Zhang   ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr);
133132d7a744SHong Zhang   ierr = PetscFree2(rows,cols);CHKERRQ(ierr);
13328ea901baSHong Zhang 
1333511c6705SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
133428be2f97SBarry Smith     ierr = MatHeaderReplace(A,&mat_elemental);CHKERRQ(ierr);
13358ea901baSHong Zhang   } else {
13368ea901baSHong Zhang     *newmat = mat_elemental;
13378ea901baSHong Zhang   }
13388baccfbdSHong Zhang   PetscFunctionReturn(0);
13398baccfbdSHong Zhang }
134065b80a83SHong Zhang #endif
13418baccfbdSHong Zhang 
1342af53bab2SHong Zhang static PetscErrorCode MatDenseGetColumn_MPIDense(Mat A,PetscInt col,PetscScalar **vals)
134386aefd0dSHong Zhang {
134486aefd0dSHong Zhang   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
134586aefd0dSHong Zhang   PetscErrorCode ierr;
134686aefd0dSHong Zhang 
134786aefd0dSHong Zhang   PetscFunctionBegin;
134886aefd0dSHong Zhang   ierr = MatDenseGetColumn(mat->A,col,vals);CHKERRQ(ierr);
134986aefd0dSHong Zhang   PetscFunctionReturn(0);
135086aefd0dSHong Zhang }
135186aefd0dSHong Zhang 
1352af53bab2SHong Zhang static PetscErrorCode MatDenseRestoreColumn_MPIDense(Mat A,PetscScalar **vals)
135386aefd0dSHong Zhang {
135486aefd0dSHong Zhang   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
135586aefd0dSHong Zhang   PetscErrorCode ierr;
135686aefd0dSHong Zhang 
135786aefd0dSHong Zhang   PetscFunctionBegin;
135886aefd0dSHong Zhang   ierr = MatDenseRestoreColumn(mat->A,vals);CHKERRQ(ierr);
135986aefd0dSHong Zhang   PetscFunctionReturn(0);
136086aefd0dSHong Zhang }
136186aefd0dSHong Zhang 
136294e2cb23SJakub Kruzik PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIDense(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat)
136394e2cb23SJakub Kruzik {
136494e2cb23SJakub Kruzik   PetscErrorCode ierr;
136594e2cb23SJakub Kruzik   Mat_MPIDense   *mat;
136694e2cb23SJakub Kruzik   PetscInt       m,nloc,N;
136794e2cb23SJakub Kruzik 
136894e2cb23SJakub Kruzik   PetscFunctionBegin;
136994e2cb23SJakub Kruzik   ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr);
137094e2cb23SJakub Kruzik   ierr = MatGetLocalSize(inmat,NULL,&nloc);CHKERRQ(ierr);
137194e2cb23SJakub Kruzik   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
137294e2cb23SJakub Kruzik     PetscInt sum;
137394e2cb23SJakub Kruzik 
137494e2cb23SJakub Kruzik     if (n == PETSC_DECIDE) {
137594e2cb23SJakub Kruzik       ierr = PetscSplitOwnership(comm,&n,&N);CHKERRQ(ierr);
137694e2cb23SJakub Kruzik     }
137794e2cb23SJakub Kruzik     /* Check sum(n) = N */
137894e2cb23SJakub Kruzik     ierr = MPIU_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr);
137994e2cb23SJakub Kruzik     if (sum != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns %D != global columns %D",sum,N);
138094e2cb23SJakub Kruzik 
138194e2cb23SJakub Kruzik     ierr = MatCreateDense(comm,m,n,PETSC_DETERMINE,N,NULL,outmat);CHKERRQ(ierr);
138294e2cb23SJakub Kruzik   }
138394e2cb23SJakub Kruzik 
138494e2cb23SJakub Kruzik   /* numeric phase */
138594e2cb23SJakub Kruzik   mat = (Mat_MPIDense*)(*outmat)->data;
138694e2cb23SJakub Kruzik   ierr = MatCopy(inmat,mat->A,SAME_NONZERO_PATTERN);CHKERRQ(ierr);
138794e2cb23SJakub Kruzik   ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
138894e2cb23SJakub Kruzik   ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
138994e2cb23SJakub Kruzik   PetscFunctionReturn(0);
139094e2cb23SJakub Kruzik }
139194e2cb23SJakub Kruzik 
13928cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIDense(Mat mat)
1393273d9f13SBarry Smith {
1394273d9f13SBarry Smith   Mat_MPIDense   *a;
1395dfbe8321SBarry Smith   PetscErrorCode ierr;
1396273d9f13SBarry Smith 
1397273d9f13SBarry Smith   PetscFunctionBegin;
1398b00a9115SJed Brown   ierr      = PetscNewLog(mat,&a);CHKERRQ(ierr);
1399b0a32e0cSBarry Smith   mat->data = (void*)a;
1400273d9f13SBarry Smith   ierr      = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1401273d9f13SBarry Smith 
1402273d9f13SBarry Smith   mat->insertmode = NOT_SET_VALUES;
1403ce94432eSBarry Smith   ierr            = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&a->rank);CHKERRQ(ierr);
1404ce94432eSBarry Smith   ierr            = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&a->size);CHKERRQ(ierr);
1405273d9f13SBarry Smith 
1406273d9f13SBarry Smith   /* build cache for off array entries formed */
1407273d9f13SBarry Smith   a->donotstash = PETSC_FALSE;
14082205254eSKarl Rupp 
1409ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)mat),1,&mat->stash);CHKERRQ(ierr);
1410273d9f13SBarry Smith 
1411273d9f13SBarry Smith   /* stuff used for matrix vector multiply */
1412273d9f13SBarry Smith   a->lvec        = 0;
1413273d9f13SBarry Smith   a->Mvctx       = 0;
1414273d9f13SBarry Smith   a->roworiented = PETSC_TRUE;
1415273d9f13SBarry Smith 
1416*49a6ff4bSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",MatDenseGetLDA_MPIDense);CHKERRQ(ierr);
1417bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",MatDenseGetArray_MPIDense);CHKERRQ(ierr);
14188572280aSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",MatDenseRestoreArray_MPIDense);CHKERRQ(ierr);
14198572280aSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",MatDenseGetArrayRead_MPIDense);CHKERRQ(ierr);
14208572280aSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",MatDenseRestoreArrayRead_MPIDense);CHKERRQ(ierr);
1421d3042a70SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",MatDensePlaceArray_MPIDense);CHKERRQ(ierr);
1422d3042a70SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",MatDenseResetArray_MPIDense);CHKERRQ(ierr);
14238baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
14248baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",MatConvert_MPIDense_Elemental);CHKERRQ(ierr);
14258baccfbdSHong Zhang #endif
1426bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",MatMPIDenseSetPreallocation_MPIDense);CHKERRQ(ierr);
1427bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMult_mpiaij_mpidense_C",MatMatMult_MPIAIJ_MPIDense);CHKERRQ(ierr);
1428bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C",MatMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr);
1429bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C",MatMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr);
14308949adfdSHong Zhang 
14318949adfdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMult_mpiaij_mpidense_C",MatTransposeMatMult_MPIAIJ_MPIDense);CHKERRQ(ierr);
14328949adfdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultSymbolic_mpiaij_mpidense_C",MatTransposeMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr);
14338949adfdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultNumeric_mpiaij_mpidense_C",MatTransposeMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr);
1434af53bab2SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",MatDenseGetColumn_MPIDense);CHKERRQ(ierr);
1435af53bab2SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",MatDenseRestoreColumn_MPIDense);CHKERRQ(ierr);
143638aed534SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)mat,MATMPIDENSE);CHKERRQ(ierr);
1437273d9f13SBarry Smith   PetscFunctionReturn(0);
1438273d9f13SBarry Smith }
1439273d9f13SBarry Smith 
1440209238afSKris Buschelman /*MC
1441002d173eSKris Buschelman    MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices.
1442209238afSKris Buschelman 
1443209238afSKris Buschelman    This matrix type is identical to MATSEQDENSE when constructed with a single process communicator,
1444209238afSKris Buschelman    and MATMPIDENSE otherwise.
1445209238afSKris Buschelman 
1446209238afSKris Buschelman    Options Database Keys:
1447209238afSKris Buschelman . -mat_type dense - sets the matrix type to "dense" during a call to MatSetFromOptions()
1448209238afSKris Buschelman 
1449209238afSKris Buschelman   Level: beginner
1450209238afSKris Buschelman 
145101b82886SBarry Smith 
1452209238afSKris Buschelman .seealso: MatCreateMPIDense,MATSEQDENSE,MATMPIDENSE
1453209238afSKris Buschelman M*/
1454209238afSKris Buschelman 
1455273d9f13SBarry Smith /*@C
1456273d9f13SBarry Smith    MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries
1457273d9f13SBarry Smith 
1458273d9f13SBarry Smith    Not collective
1459273d9f13SBarry Smith 
1460273d9f13SBarry Smith    Input Parameters:
14611c4f3114SJed Brown .  B - the matrix
14620298fd71SBarry Smith -  data - optional location of matrix data.  Set data=NULL for PETSc
1463273d9f13SBarry Smith    to control all matrix memory allocation.
1464273d9f13SBarry Smith 
1465273d9f13SBarry Smith    Notes:
1466273d9f13SBarry Smith    The dense format is fully compatible with standard Fortran 77
1467273d9f13SBarry Smith    storage by columns.
1468273d9f13SBarry Smith 
1469273d9f13SBarry Smith    The data input variable is intended primarily for Fortran programmers
1470273d9f13SBarry Smith    who wish to allocate their own matrix memory space.  Most users should
14710298fd71SBarry Smith    set data=NULL.
1472273d9f13SBarry Smith 
1473273d9f13SBarry Smith    Level: intermediate
1474273d9f13SBarry Smith 
1475273d9f13SBarry Smith .keywords: matrix,dense, parallel
1476273d9f13SBarry Smith 
1477273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues()
1478273d9f13SBarry Smith @*/
14791c4f3114SJed Brown PetscErrorCode  MatMPIDenseSetPreallocation(Mat B,PetscScalar *data)
1480273d9f13SBarry Smith {
14814ac538c5SBarry Smith   PetscErrorCode ierr;
1482273d9f13SBarry Smith 
1483273d9f13SBarry Smith   PetscFunctionBegin;
14841c4f3114SJed Brown   ierr = PetscTryMethod(B,"MatMPIDenseSetPreallocation_C",(Mat,PetscScalar*),(B,data));CHKERRQ(ierr);
1485273d9f13SBarry Smith   PetscFunctionReturn(0);
1486273d9f13SBarry Smith }
1487273d9f13SBarry Smith 
1488d3042a70SBarry Smith /*@
1489d3042a70SBarry Smith    MatDensePlaceArray - Allows one to replace the array in a dense array with an
1490d3042a70SBarry Smith    array provided by the user. This is useful to avoid copying an array
1491d3042a70SBarry Smith    into a matrix
1492d3042a70SBarry Smith 
1493d3042a70SBarry Smith    Not Collective
1494d3042a70SBarry Smith 
1495d3042a70SBarry Smith    Input Parameters:
1496d3042a70SBarry Smith +  mat - the matrix
1497d3042a70SBarry Smith -  array - the array in column major order
1498d3042a70SBarry Smith 
1499d3042a70SBarry Smith    Notes:
1500d3042a70SBarry Smith    You can return to the original array with a call to MatDenseResetArray(). The user is responsible for freeing this array; it will not be
1501d3042a70SBarry Smith    freed when the matrix is destroyed.
1502d3042a70SBarry Smith 
1503d3042a70SBarry Smith    Level: developer
1504d3042a70SBarry Smith 
1505d3042a70SBarry Smith .seealso: MatDenseGetArray(), MatDenseResetArray(), VecPlaceArray(), VecGetArray(), VecRestoreArray(), VecReplaceArray(), VecResetArray()
1506d3042a70SBarry Smith 
1507d3042a70SBarry Smith @*/
1508d3042a70SBarry Smith PetscErrorCode  MatDensePlaceArray(Mat mat,const PetscScalar array[])
1509d3042a70SBarry Smith {
1510d3042a70SBarry Smith   PetscErrorCode ierr;
1511d3042a70SBarry Smith   PetscFunctionBegin;
1512d3042a70SBarry Smith   ierr = PetscUseMethod(mat,"MatDensePlaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr);
1513d3042a70SBarry Smith   ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr);
1514d3042a70SBarry Smith   PetscFunctionReturn(0);
1515d3042a70SBarry Smith }
1516d3042a70SBarry Smith 
1517d3042a70SBarry Smith /*@
1518d3042a70SBarry Smith    MatDenseResetArray - Resets the matrix array to that it previously had before the call to MatDensePlaceArray()
1519d3042a70SBarry Smith 
1520d3042a70SBarry Smith    Not Collective
1521d3042a70SBarry Smith 
1522d3042a70SBarry Smith    Input Parameters:
1523d3042a70SBarry Smith .  mat - the matrix
1524d3042a70SBarry Smith 
1525d3042a70SBarry Smith    Notes:
1526d3042a70SBarry Smith    You can only call this after a call to MatDensePlaceArray()
1527d3042a70SBarry Smith 
1528d3042a70SBarry Smith    Level: developer
1529d3042a70SBarry Smith 
1530d3042a70SBarry Smith .seealso: MatDenseGetArray(), MatDensePlaceArray(), VecPlaceArray(), VecGetArray(), VecRestoreArray(), VecReplaceArray(), VecResetArray()
1531d3042a70SBarry Smith 
1532d3042a70SBarry Smith @*/
1533d3042a70SBarry Smith PetscErrorCode  MatDenseResetArray(Mat mat)
1534d3042a70SBarry Smith {
1535d3042a70SBarry Smith   PetscErrorCode ierr;
1536d3042a70SBarry Smith   PetscFunctionBegin;
1537d3042a70SBarry Smith   ierr = PetscUseMethod(mat,"MatDenseResetArray_C",(Mat),(mat));CHKERRQ(ierr);
1538d3042a70SBarry Smith   ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr);
1539d3042a70SBarry Smith   PetscFunctionReturn(0);
1540d3042a70SBarry Smith }
1541d3042a70SBarry Smith 
15428965ea79SLois Curfman McInnes /*@C
154369b1f4b7SBarry Smith    MatCreateDense - Creates a parallel matrix in dense format.
15448965ea79SLois Curfman McInnes 
1545db81eaa0SLois Curfman McInnes    Collective on MPI_Comm
1546db81eaa0SLois Curfman McInnes 
15478965ea79SLois Curfman McInnes    Input Parameters:
1548db81eaa0SLois Curfman McInnes +  comm - MPI communicator
15498965ea79SLois Curfman McInnes .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1550db81eaa0SLois Curfman McInnes .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
15518965ea79SLois Curfman McInnes .  M - number of global rows (or PETSC_DECIDE to have calculated if m is given)
1552db81eaa0SLois Curfman McInnes .  N - number of global columns (or PETSC_DECIDE to have calculated if n is given)
15536cfe35ddSJose E. Roman -  data - optional location of matrix data.  Set data=NULL (PETSC_NULL_SCALAR for Fortran users) for PETSc
1554dfc5480cSLois Curfman McInnes    to control all matrix memory allocation.
15558965ea79SLois Curfman McInnes 
15568965ea79SLois Curfman McInnes    Output Parameter:
1557477f1c0bSLois Curfman McInnes .  A - the matrix
15588965ea79SLois Curfman McInnes 
1559b259b22eSLois Curfman McInnes    Notes:
156039ddd567SLois Curfman McInnes    The dense format is fully compatible with standard Fortran 77
156139ddd567SLois Curfman McInnes    storage by columns.
15628965ea79SLois Curfman McInnes 
156318f449edSLois Curfman McInnes    The data input variable is intended primarily for Fortran programmers
156418f449edSLois Curfman McInnes    who wish to allocate their own matrix memory space.  Most users should
15656cfe35ddSJose E. Roman    set data=NULL (PETSC_NULL_SCALAR for Fortran users).
156618f449edSLois Curfman McInnes 
15678965ea79SLois Curfman McInnes    The user MUST specify either the local or global matrix dimensions
15688965ea79SLois Curfman McInnes    (possibly both).
15698965ea79SLois Curfman McInnes 
1570027ccd11SLois Curfman McInnes    Level: intermediate
1571027ccd11SLois Curfman McInnes 
157239ddd567SLois Curfman McInnes .keywords: matrix,dense, parallel
15738965ea79SLois Curfman McInnes 
157439ddd567SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues()
15758965ea79SLois Curfman McInnes @*/
157669b1f4b7SBarry Smith PetscErrorCode  MatCreateDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A)
15778965ea79SLois Curfman McInnes {
15786849ba73SBarry Smith   PetscErrorCode ierr;
157913f74950SBarry Smith   PetscMPIInt    size;
15808965ea79SLois Curfman McInnes 
15813a40ed3dSBarry Smith   PetscFunctionBegin;
1582f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
1583f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
1584273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
1585273d9f13SBarry Smith   if (size > 1) {
1586273d9f13SBarry Smith     ierr = MatSetType(*A,MATMPIDENSE);CHKERRQ(ierr);
1587273d9f13SBarry Smith     ierr = MatMPIDenseSetPreallocation(*A,data);CHKERRQ(ierr);
15886cfe35ddSJose E. Roman     if (data) {  /* user provided data array, so no need to assemble */
15896cfe35ddSJose E. Roman       ierr = MatSetUpMultiply_MPIDense(*A);CHKERRQ(ierr);
15906cfe35ddSJose E. Roman       (*A)->assembled = PETSC_TRUE;
15916cfe35ddSJose E. Roman     }
1592273d9f13SBarry Smith   } else {
1593273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr);
1594273d9f13SBarry Smith     ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr);
15958c469469SLois Curfman McInnes   }
15963a40ed3dSBarry Smith   PetscFunctionReturn(0);
15978965ea79SLois Curfman McInnes }
15988965ea79SLois Curfman McInnes 
15996849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat)
16008965ea79SLois Curfman McInnes {
16018965ea79SLois Curfman McInnes   Mat            mat;
16023501a2bdSLois Curfman McInnes   Mat_MPIDense   *a,*oldmat = (Mat_MPIDense*)A->data;
1603dfbe8321SBarry Smith   PetscErrorCode ierr;
16048965ea79SLois Curfman McInnes 
16053a40ed3dSBarry Smith   PetscFunctionBegin;
16068965ea79SLois Curfman McInnes   *newmat = 0;
1607ce94432eSBarry Smith   ierr    = MatCreate(PetscObjectComm((PetscObject)A),&mat);CHKERRQ(ierr);
1608d0f46423SBarry Smith   ierr    = MatSetSizes(mat,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
16097adad957SLisandro Dalcin   ierr    = MatSetType(mat,((PetscObject)A)->type_name);CHKERRQ(ierr);
1610834f8fabSBarry Smith   a       = (Mat_MPIDense*)mat->data;
16115aa7edbeSHong Zhang 
1612d5f3da31SBarry Smith   mat->factortype   = A->factortype;
1613c456f294SBarry Smith   mat->assembled    = PETSC_TRUE;
1614273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
16158965ea79SLois Curfman McInnes 
16168965ea79SLois Curfman McInnes   a->size         = oldmat->size;
16178965ea79SLois Curfman McInnes   a->rank         = oldmat->rank;
1618e0fa3b82SLois Curfman McInnes   mat->insertmode = NOT_SET_VALUES;
1619b9b97703SBarry Smith   a->nvec         = oldmat->nvec;
16203782ba37SSatish Balay   a->donotstash   = oldmat->donotstash;
1621e04c1aa4SHong Zhang 
16221e1e43feSBarry Smith   ierr = PetscLayoutReference(A->rmap,&mat->rmap);CHKERRQ(ierr);
16231e1e43feSBarry Smith   ierr = PetscLayoutReference(A->cmap,&mat->cmap);CHKERRQ(ierr);
16248965ea79SLois Curfman McInnes 
1625329f5518SBarry Smith   ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr);
16265609ef8eSBarry Smith   ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
16273bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr);
162801b82886SBarry Smith 
16298965ea79SLois Curfman McInnes   *newmat = mat;
16303a40ed3dSBarry Smith   PetscFunctionReturn(0);
16318965ea79SLois Curfman McInnes }
16328965ea79SLois Curfman McInnes 
16339d36ed5fSBarry Smith PetscErrorCode MatLoad_MPIDense_DenseInFile(MPI_Comm comm,PetscInt fd,PetscInt M,PetscInt N,Mat newmat)
163486d161a7SShri Abhyankar {
163586d161a7SShri Abhyankar   PetscErrorCode ierr;
163686d161a7SShri Abhyankar   PetscMPIInt    rank,size;
163774c13d95SBarry Smith   const PetscInt *rowners;
163874c13d95SBarry Smith   PetscInt       i,m,n,nz,j,mMax;
163986d161a7SShri Abhyankar   PetscScalar    *array,*vals,*vals_ptr;
16409d36ed5fSBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*)newmat->data;
164186d161a7SShri Abhyankar 
164286d161a7SShri Abhyankar   PetscFunctionBegin;
164386d161a7SShri Abhyankar   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
164486d161a7SShri Abhyankar   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
164586d161a7SShri Abhyankar 
164674c13d95SBarry Smith   /* determine ownership of rows and columns */
164774c13d95SBarry Smith   m = (newmat->rmap->n < 0) ? PETSC_DECIDE : newmat->rmap->n;
164874c13d95SBarry Smith   n = (newmat->cmap->n < 0) ? PETSC_DECIDE : newmat->cmap->n;
164986d161a7SShri Abhyankar 
165074c13d95SBarry Smith   ierr = MatSetSizes(newmat,m,n,M,N);CHKERRQ(ierr);
1651430ada49SBarry Smith   if (!a->A) {
16520298fd71SBarry Smith     ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr);
16539d36ed5fSBarry Smith   }
16548c778c55SBarry Smith   ierr = MatDenseGetArray(newmat,&array);CHKERRQ(ierr);
165549467e7dSBarry Smith   ierr = MatGetLocalSize(newmat,&m,NULL);CHKERRQ(ierr);
165674c13d95SBarry Smith   ierr = MatGetOwnershipRanges(newmat,&rowners);CHKERRQ(ierr);
1657396e826eSBarry Smith   ierr = MPI_Reduce(&m,&mMax,1,MPIU_INT,MPI_MAX,0,comm);CHKERRQ(ierr);
165886d161a7SShri Abhyankar   if (!rank) {
16599d36ed5fSBarry Smith     ierr = PetscMalloc1(mMax*N,&vals);CHKERRQ(ierr);
166086d161a7SShri Abhyankar 
166186d161a7SShri Abhyankar     /* read in my part of the matrix numerical values  */
166286d161a7SShri Abhyankar     ierr = PetscBinaryRead(fd,vals,m*N,PETSC_SCALAR);CHKERRQ(ierr);
166386d161a7SShri Abhyankar 
166486d161a7SShri Abhyankar     /* insert into matrix-by row (this is why cannot directly read into array */
166586d161a7SShri Abhyankar     vals_ptr = vals;
166686d161a7SShri Abhyankar     for (i=0; i<m; i++) {
166786d161a7SShri Abhyankar       for (j=0; j<N; j++) {
166886d161a7SShri Abhyankar         array[i + j*m] = *vals_ptr++;
166986d161a7SShri Abhyankar       }
167086d161a7SShri Abhyankar     }
167186d161a7SShri Abhyankar 
167286d161a7SShri Abhyankar     /* read in other processors and ship out */
167386d161a7SShri Abhyankar     for (i=1; i<size; i++) {
167486d161a7SShri Abhyankar       nz   = (rowners[i+1] - rowners[i])*N;
167586d161a7SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
1676a25532f0SBarry Smith       ierr = MPIULong_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)(newmat))->tag,comm);CHKERRQ(ierr);
167786d161a7SShri Abhyankar     }
167886d161a7SShri Abhyankar   } else {
167986d161a7SShri Abhyankar     /* receive numeric values */
1680785e854fSJed Brown     ierr = PetscMalloc1(m*N,&vals);CHKERRQ(ierr);
168186d161a7SShri Abhyankar 
168286d161a7SShri Abhyankar     /* receive message of values*/
1683a25532f0SBarry Smith     ierr = MPIULong_Recv(vals,m*N,MPIU_SCALAR,0,((PetscObject)(newmat))->tag,comm);CHKERRQ(ierr);
168486d161a7SShri Abhyankar 
168586d161a7SShri Abhyankar     /* insert into matrix-by row (this is why cannot directly read into array */
168686d161a7SShri Abhyankar     vals_ptr = vals;
168786d161a7SShri Abhyankar     for (i=0; i<m; i++) {
168886d161a7SShri Abhyankar       for (j=0; j<N; j++) {
168986d161a7SShri Abhyankar         array[i + j*m] = *vals_ptr++;
169086d161a7SShri Abhyankar       }
169186d161a7SShri Abhyankar     }
169286d161a7SShri Abhyankar   }
16938c778c55SBarry Smith   ierr = MatDenseRestoreArray(newmat,&array);CHKERRQ(ierr);
169486d161a7SShri Abhyankar   ierr = PetscFree(vals);CHKERRQ(ierr);
169586d161a7SShri Abhyankar   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
169686d161a7SShri Abhyankar   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
169786d161a7SShri Abhyankar   PetscFunctionReturn(0);
169886d161a7SShri Abhyankar }
169986d161a7SShri Abhyankar 
1700112444f4SShri Abhyankar PetscErrorCode MatLoad_MPIDense(Mat newmat,PetscViewer viewer)
170186d161a7SShri Abhyankar {
1702dfdea288SBarry Smith   Mat_MPIDense   *a;
170386d161a7SShri Abhyankar   PetscScalar    *vals,*svals;
1704ce94432eSBarry Smith   MPI_Comm       comm;
170586d161a7SShri Abhyankar   MPI_Status     status;
170649467e7dSBarry Smith   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*rowners,*sndcounts,m,n,maxnz;
170786d161a7SShri Abhyankar   PetscInt       header[4],*rowlengths = 0,M,N,*cols;
170849467e7dSBarry Smith   PetscInt       *ourlens,*procsnz = 0,jj,*mycols,*smycols;
17099d36ed5fSBarry Smith   PetscInt       i,nz,j,rstart,rend;
171086d161a7SShri Abhyankar   int            fd;
17117f489da9SVaclav Hapla   PetscBool      isbinary;
171286d161a7SShri Abhyankar   PetscErrorCode ierr;
171386d161a7SShri Abhyankar 
171486d161a7SShri Abhyankar   PetscFunctionBegin;
17157f489da9SVaclav Hapla   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
17167f489da9SVaclav Hapla   if (!isbinary) SETERRQ2(PetscObjectComm((PetscObject)newmat),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)newmat)->type_name);
17177f489da9SVaclav Hapla 
1718c98fd787SBarry Smith   /* force binary viewer to load .info file if it has not yet done so */
1719c98fd787SBarry Smith   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
1720ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr);
172186d161a7SShri Abhyankar   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
172286d161a7SShri Abhyankar   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
172386d161a7SShri Abhyankar   ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
17245872f025SBarry Smith   if (!rank) {
172586d161a7SShri Abhyankar     ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr);
172686d161a7SShri Abhyankar     if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
172786d161a7SShri Abhyankar   }
172886d161a7SShri Abhyankar   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
172986d161a7SShri Abhyankar   M    = header[1]; N = header[2]; nz = header[3];
173086d161a7SShri Abhyankar 
173186d161a7SShri Abhyankar   /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */
17329d36ed5fSBarry Smith   if (newmat->rmap->N < 0) newmat->rmap->N = M;
17339d36ed5fSBarry Smith   if (newmat->cmap->N < 0) newmat->cmap->N = N;
173486d161a7SShri Abhyankar 
17359d36ed5fSBarry Smith   if (newmat->rmap->N != M) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%D) and input matrix has (%D)",M,newmat->rmap->N);
17369d36ed5fSBarry Smith   if (newmat->cmap->N != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%D) and input matrix has (%D)",N,newmat->cmap->N);
173786d161a7SShri Abhyankar 
173886d161a7SShri Abhyankar   /*
173986d161a7SShri Abhyankar        Handle case where matrix is stored on disk as a dense matrix
174086d161a7SShri Abhyankar   */
174186d161a7SShri Abhyankar   if (nz == MATRIX_BINARY_FORMAT_DENSE) {
17429d36ed5fSBarry Smith     ierr = MatLoad_MPIDense_DenseInFile(comm,fd,M,N,newmat);CHKERRQ(ierr);
174386d161a7SShri Abhyankar     PetscFunctionReturn(0);
174486d161a7SShri Abhyankar   }
174586d161a7SShri Abhyankar 
174686d161a7SShri Abhyankar   /* determine ownership of all rows */
17472205254eSKarl Rupp   if (newmat->rmap->n < 0) {
17482205254eSKarl Rupp     ierr = PetscMPIIntCast(M/size + ((M % size) > rank),&m);CHKERRQ(ierr);
17492205254eSKarl Rupp   } else {
17502205254eSKarl Rupp     ierr = PetscMPIIntCast(newmat->rmap->n,&m);CHKERRQ(ierr);
17512205254eSKarl Rupp   }
175249467e7dSBarry Smith   if (newmat->cmap->n < 0) {
175349467e7dSBarry Smith     n = PETSC_DECIDE;
175449467e7dSBarry Smith   } else {
175549467e7dSBarry Smith     ierr = PetscMPIIntCast(newmat->cmap->n,&n);CHKERRQ(ierr);
175649467e7dSBarry Smith   }
175749467e7dSBarry Smith 
1758854ce69bSBarry Smith   ierr       = PetscMalloc1(size+2,&rowners);CHKERRQ(ierr);
175986d161a7SShri Abhyankar   ierr       = MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
176086d161a7SShri Abhyankar   rowners[0] = 0;
176186d161a7SShri Abhyankar   for (i=2; i<=size; i++) {
176286d161a7SShri Abhyankar     rowners[i] += rowners[i-1];
176386d161a7SShri Abhyankar   }
176486d161a7SShri Abhyankar   rstart = rowners[rank];
176586d161a7SShri Abhyankar   rend   = rowners[rank+1];
176686d161a7SShri Abhyankar 
176786d161a7SShri Abhyankar   /* distribute row lengths to all processors */
176849467e7dSBarry Smith   ierr = PetscMalloc1(rend-rstart,&ourlens);CHKERRQ(ierr);
176986d161a7SShri Abhyankar   if (!rank) {
1770785e854fSJed Brown     ierr = PetscMalloc1(M,&rowlengths);CHKERRQ(ierr);
177186d161a7SShri Abhyankar     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
1772785e854fSJed Brown     ierr = PetscMalloc1(size,&sndcounts);CHKERRQ(ierr);
177386d161a7SShri Abhyankar     for (i=0; i<size; i++) sndcounts[i] = rowners[i+1] - rowners[i];
177486d161a7SShri Abhyankar     ierr = MPI_Scatterv(rowlengths,sndcounts,rowners,MPIU_INT,ourlens,rend-rstart,MPIU_INT,0,comm);CHKERRQ(ierr);
177586d161a7SShri Abhyankar     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
177686d161a7SShri Abhyankar   } else {
177786d161a7SShri Abhyankar     ierr = MPI_Scatterv(0,0,0,MPIU_INT,ourlens,rend-rstart,MPIU_INT,0,comm);CHKERRQ(ierr);
177886d161a7SShri Abhyankar   }
177986d161a7SShri Abhyankar 
178086d161a7SShri Abhyankar   if (!rank) {
178186d161a7SShri Abhyankar     /* calculate the number of nonzeros on each processor */
1782785e854fSJed Brown     ierr = PetscMalloc1(size,&procsnz);CHKERRQ(ierr);
178386d161a7SShri Abhyankar     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
178486d161a7SShri Abhyankar     for (i=0; i<size; i++) {
178586d161a7SShri Abhyankar       for (j=rowners[i]; j< rowners[i+1]; j++) {
178686d161a7SShri Abhyankar         procsnz[i] += rowlengths[j];
178786d161a7SShri Abhyankar       }
178886d161a7SShri Abhyankar     }
178986d161a7SShri Abhyankar     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
179086d161a7SShri Abhyankar 
179186d161a7SShri Abhyankar     /* determine max buffer needed and allocate it */
179286d161a7SShri Abhyankar     maxnz = 0;
179386d161a7SShri Abhyankar     for (i=0; i<size; i++) {
179486d161a7SShri Abhyankar       maxnz = PetscMax(maxnz,procsnz[i]);
179586d161a7SShri Abhyankar     }
1796785e854fSJed Brown     ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr);
179786d161a7SShri Abhyankar 
179886d161a7SShri Abhyankar     /* read in my part of the matrix column indices  */
179986d161a7SShri Abhyankar     nz   = procsnz[0];
1800785e854fSJed Brown     ierr = PetscMalloc1(nz,&mycols);CHKERRQ(ierr);
180186d161a7SShri Abhyankar     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
180286d161a7SShri Abhyankar 
180386d161a7SShri Abhyankar     /* read in every one elses and ship off */
180486d161a7SShri Abhyankar     for (i=1; i<size; i++) {
180586d161a7SShri Abhyankar       nz   = procsnz[i];
180686d161a7SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
180786d161a7SShri Abhyankar       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
180886d161a7SShri Abhyankar     }
180986d161a7SShri Abhyankar     ierr = PetscFree(cols);CHKERRQ(ierr);
181086d161a7SShri Abhyankar   } else {
181186d161a7SShri Abhyankar     /* determine buffer space needed for message */
181286d161a7SShri Abhyankar     nz = 0;
181386d161a7SShri Abhyankar     for (i=0; i<m; i++) {
181486d161a7SShri Abhyankar       nz += ourlens[i];
181586d161a7SShri Abhyankar     }
1816854ce69bSBarry Smith     ierr = PetscMalloc1(nz+1,&mycols);CHKERRQ(ierr);
181786d161a7SShri Abhyankar 
181886d161a7SShri Abhyankar     /* receive message of column indices*/
181986d161a7SShri Abhyankar     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
182086d161a7SShri Abhyankar     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
182186d161a7SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
182286d161a7SShri Abhyankar   }
182386d161a7SShri Abhyankar 
182449467e7dSBarry Smith   ierr = MatSetSizes(newmat,m,n,M,N);CHKERRQ(ierr);
1825dfdea288SBarry Smith   a = (Mat_MPIDense*)newmat->data;
1826430ada49SBarry Smith   if (!a->A) {
18270298fd71SBarry Smith     ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr);
1828dfdea288SBarry Smith   }
182986d161a7SShri Abhyankar 
183086d161a7SShri Abhyankar   if (!rank) {
1831785e854fSJed Brown     ierr = PetscMalloc1(maxnz,&vals);CHKERRQ(ierr);
183286d161a7SShri Abhyankar 
183386d161a7SShri Abhyankar     /* read in my part of the matrix numerical values  */
183486d161a7SShri Abhyankar     nz   = procsnz[0];
183586d161a7SShri Abhyankar     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
183686d161a7SShri Abhyankar 
183786d161a7SShri Abhyankar     /* insert into matrix */
183886d161a7SShri Abhyankar     jj      = rstart;
183986d161a7SShri Abhyankar     smycols = mycols;
184086d161a7SShri Abhyankar     svals   = vals;
184186d161a7SShri Abhyankar     for (i=0; i<m; i++) {
184286d161a7SShri Abhyankar       ierr     = MatSetValues(newmat,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr);
184386d161a7SShri Abhyankar       smycols += ourlens[i];
184486d161a7SShri Abhyankar       svals   += ourlens[i];
184586d161a7SShri Abhyankar       jj++;
184686d161a7SShri Abhyankar     }
184786d161a7SShri Abhyankar 
184886d161a7SShri Abhyankar     /* read in other processors and ship out */
184986d161a7SShri Abhyankar     for (i=1; i<size; i++) {
185086d161a7SShri Abhyankar       nz   = procsnz[i];
185186d161a7SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
185286d161a7SShri Abhyankar       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
185386d161a7SShri Abhyankar     }
185486d161a7SShri Abhyankar     ierr = PetscFree(procsnz);CHKERRQ(ierr);
185586d161a7SShri Abhyankar   } else {
185686d161a7SShri Abhyankar     /* receive numeric values */
1857854ce69bSBarry Smith     ierr = PetscMalloc1(nz+1,&vals);CHKERRQ(ierr);
185886d161a7SShri Abhyankar 
185986d161a7SShri Abhyankar     /* receive message of values*/
186086d161a7SShri Abhyankar     ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr);
186186d161a7SShri Abhyankar     ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
186286d161a7SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
186386d161a7SShri Abhyankar 
186486d161a7SShri Abhyankar     /* insert into matrix */
186586d161a7SShri Abhyankar     jj      = rstart;
186686d161a7SShri Abhyankar     smycols = mycols;
186786d161a7SShri Abhyankar     svals   = vals;
186886d161a7SShri Abhyankar     for (i=0; i<m; i++) {
186986d161a7SShri Abhyankar       ierr     = MatSetValues(newmat,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr);
187086d161a7SShri Abhyankar       smycols += ourlens[i];
187186d161a7SShri Abhyankar       svals   += ourlens[i];
187286d161a7SShri Abhyankar       jj++;
187386d161a7SShri Abhyankar     }
187486d161a7SShri Abhyankar   }
187549467e7dSBarry Smith   ierr = PetscFree(ourlens);CHKERRQ(ierr);
187686d161a7SShri Abhyankar   ierr = PetscFree(vals);CHKERRQ(ierr);
187786d161a7SShri Abhyankar   ierr = PetscFree(mycols);CHKERRQ(ierr);
187886d161a7SShri Abhyankar   ierr = PetscFree(rowners);CHKERRQ(ierr);
187986d161a7SShri Abhyankar 
188086d161a7SShri Abhyankar   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
188186d161a7SShri Abhyankar   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
188286d161a7SShri Abhyankar   PetscFunctionReturn(0);
188386d161a7SShri Abhyankar }
188486d161a7SShri Abhyankar 
1885ace3abfcSBarry Smith PetscErrorCode MatEqual_MPIDense(Mat A,Mat B,PetscBool  *flag)
18866e4ee0c6SHong Zhang {
18876e4ee0c6SHong Zhang   Mat_MPIDense   *matB = (Mat_MPIDense*)B->data,*matA = (Mat_MPIDense*)A->data;
18886e4ee0c6SHong Zhang   Mat            a,b;
1889ace3abfcSBarry Smith   PetscBool      flg;
18906e4ee0c6SHong Zhang   PetscErrorCode ierr;
189190ace30eSBarry Smith 
18926e4ee0c6SHong Zhang   PetscFunctionBegin;
18936e4ee0c6SHong Zhang   a    = matA->A;
18946e4ee0c6SHong Zhang   b    = matB->A;
18956e4ee0c6SHong Zhang   ierr = MatEqual(a,b,&flg);CHKERRQ(ierr);
1896b2566f29SBarry Smith   ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
18976e4ee0c6SHong Zhang   PetscFunctionReturn(0);
18986e4ee0c6SHong Zhang }
189990ace30eSBarry Smith 
1900baa3c1c6SHong Zhang PetscErrorCode MatDestroy_MatTransMatMult_MPIDense_MPIDense(Mat A)
1901baa3c1c6SHong Zhang {
1902baa3c1c6SHong Zhang   PetscErrorCode        ierr;
1903baa3c1c6SHong Zhang   Mat_MPIDense          *a = (Mat_MPIDense*)A->data;
1904baa3c1c6SHong Zhang   Mat_TransMatMultDense *atb = a->atbdense;
1905baa3c1c6SHong Zhang 
1906baa3c1c6SHong Zhang   PetscFunctionBegin;
1907c5ef1628SHong Zhang   ierr = PetscFree3(atb->sendbuf,atb->atbarray,atb->recvcounts);CHKERRQ(ierr);
1908baa3c1c6SHong Zhang   ierr = (atb->destroy)(A);CHKERRQ(ierr);
1909baa3c1c6SHong Zhang   ierr = PetscFree(atb);CHKERRQ(ierr);
1910baa3c1c6SHong Zhang   PetscFunctionReturn(0);
1911baa3c1c6SHong Zhang }
1912baa3c1c6SHong Zhang 
1913cc48ffa7SToby Isaac PetscErrorCode MatDestroy_MatMatTransMult_MPIDense_MPIDense(Mat A)
1914cc48ffa7SToby Isaac {
1915cc48ffa7SToby Isaac   PetscErrorCode        ierr;
1916cc48ffa7SToby Isaac   Mat_MPIDense          *a = (Mat_MPIDense*)A->data;
1917cc48ffa7SToby Isaac   Mat_MatTransMultDense *abt = a->abtdense;
1918cc48ffa7SToby Isaac 
1919cc48ffa7SToby Isaac   PetscFunctionBegin;
1920cc48ffa7SToby Isaac   ierr = PetscFree2(abt->buf[0],abt->buf[1]);CHKERRQ(ierr);
1921faa55883SToby Isaac   ierr = PetscFree2(abt->recvcounts,abt->recvdispls);CHKERRQ(ierr);
1922cc48ffa7SToby Isaac   ierr = (abt->destroy)(A);CHKERRQ(ierr);
1923cc48ffa7SToby Isaac   ierr = PetscFree(abt);CHKERRQ(ierr);
1924cc48ffa7SToby Isaac   PetscFunctionReturn(0);
1925cc48ffa7SToby Isaac }
1926cc48ffa7SToby Isaac 
1927cb20be35SHong Zhang PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C)
1928cb20be35SHong Zhang {
1929baa3c1c6SHong Zhang   Mat_MPIDense   *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data;
1930660d5466SHong Zhang   Mat_SeqDense   *aseq=(Mat_SeqDense*)(a->A)->data, *bseq=(Mat_SeqDense*)(b->A)->data;
1931baa3c1c6SHong Zhang   Mat_TransMatMultDense *atb = c->atbdense;
1932cb20be35SHong Zhang   PetscErrorCode ierr;
1933cb20be35SHong Zhang   MPI_Comm       comm;
1934d5017740SHong Zhang   PetscMPIInt    rank,size,*recvcounts=atb->recvcounts;
1935c5ef1628SHong Zhang   PetscScalar    *carray,*atbarray=atb->atbarray,*sendbuf=atb->sendbuf;
1936d5017740SHong Zhang   PetscInt       i,cN=C->cmap->N,cM=C->rmap->N,proc,k,j;
1937660d5466SHong Zhang   PetscScalar    _DOne=1.0,_DZero=0.0;
1938adc7a786SHong Zhang   PetscBLASInt   am,an,bn,aN;
1939e68c0b26SHong Zhang   const PetscInt *ranges;
1940cb20be35SHong Zhang 
1941cb20be35SHong Zhang   PetscFunctionBegin;
1942cb20be35SHong Zhang   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
1943cb20be35SHong Zhang   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
1944cb20be35SHong Zhang   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
1945e68c0b26SHong Zhang 
1946c5ef1628SHong Zhang   /* compute atbarray = aseq^T * bseq */
1947660d5466SHong Zhang   ierr = PetscBLASIntCast(a->A->cmap->n,&an);CHKERRQ(ierr);
1948660d5466SHong Zhang   ierr = PetscBLASIntCast(b->A->cmap->n,&bn);CHKERRQ(ierr);
1949660d5466SHong Zhang   ierr = PetscBLASIntCast(a->A->rmap->n,&am);CHKERRQ(ierr);
1950adc7a786SHong Zhang   ierr = PetscBLASIntCast(A->cmap->N,&aN);CHKERRQ(ierr);
1951adc7a786SHong Zhang   PetscStackCallBLAS("BLASgemm",BLASgemm_("T","N",&an,&bn,&am,&_DOne,aseq->v,&aseq->lda,bseq->v,&bseq->lda,&_DZero,atbarray,&aN));
1952cb20be35SHong Zhang 
1953cb20be35SHong Zhang   ierr = MatGetOwnershipRanges(C,&ranges);CHKERRQ(ierr);
1954c5ef1628SHong Zhang   for (i=0; i<size; i++) recvcounts[i] = (ranges[i+1] - ranges[i])*cN;
1955cb20be35SHong Zhang 
1956660d5466SHong Zhang   /* arrange atbarray into sendbuf */
1957cb20be35SHong Zhang   k = 0;
1958cb20be35SHong Zhang   for (proc=0; proc<size; proc++) {
1959baa3c1c6SHong Zhang     for (j=0; j<cN; j++) {
1960c5ef1628SHong Zhang       for (i=ranges[proc]; i<ranges[proc+1]; i++) sendbuf[k++] = atbarray[i+j*cM];
1961cb20be35SHong Zhang     }
1962cb20be35SHong Zhang   }
1963c5ef1628SHong Zhang   /* sum all atbarray to local values of C */
1964660d5466SHong Zhang   ierr = MatDenseGetArray(c->A,&carray);CHKERRQ(ierr);
19653462b7efSHong Zhang   ierr = MPI_Reduce_scatter(sendbuf,carray,recvcounts,MPIU_SCALAR,MPIU_SUM,comm);CHKERRQ(ierr);
1966660d5466SHong Zhang   ierr = MatDenseRestoreArray(c->A,&carray);CHKERRQ(ierr);
1967cb20be35SHong Zhang   PetscFunctionReturn(0);
1968cb20be35SHong Zhang }
1969cb20be35SHong Zhang 
1970cb20be35SHong Zhang PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat *C)
1971cb20be35SHong Zhang {
1972cb20be35SHong Zhang   PetscErrorCode        ierr;
1973baa3c1c6SHong Zhang   Mat                   Cdense;
1974cb20be35SHong Zhang   MPI_Comm              comm;
1975baa3c1c6SHong Zhang   PetscMPIInt           size;
1976660d5466SHong Zhang   PetscInt              cm=A->cmap->n,cM,cN=B->cmap->N;
1977baa3c1c6SHong Zhang   Mat_MPIDense          *c;
1978baa3c1c6SHong Zhang   Mat_TransMatMultDense *atb;
1979cb20be35SHong Zhang 
1980cb20be35SHong Zhang   PetscFunctionBegin;
1981baa3c1c6SHong Zhang   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
1982cb20be35SHong Zhang   if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) {
1983cb20be35SHong Zhang     SETERRQ4(comm,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != B (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend);
1984cb20be35SHong Zhang   }
1985cb20be35SHong Zhang 
1986baa3c1c6SHong Zhang   /* create matrix product Cdense */
1987baa3c1c6SHong Zhang   ierr = MatCreate(comm,&Cdense);CHKERRQ(ierr);
1988660d5466SHong Zhang   ierr = MatSetSizes(Cdense,cm,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr);
1989baa3c1c6SHong Zhang   ierr = MatSetType(Cdense,MATMPIDENSE);CHKERRQ(ierr);
1990baa3c1c6SHong Zhang   ierr = MatMPIDenseSetPreallocation(Cdense,NULL);CHKERRQ(ierr);
1991baa3c1c6SHong Zhang   ierr = MatAssemblyBegin(Cdense,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1992baa3c1c6SHong Zhang   ierr = MatAssemblyEnd(Cdense,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1993baa3c1c6SHong Zhang   *C   = Cdense;
1994baa3c1c6SHong Zhang 
1995baa3c1c6SHong Zhang   /* create data structure for reuse Cdense */
1996baa3c1c6SHong Zhang   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
1997baa3c1c6SHong Zhang   ierr = PetscNew(&atb);CHKERRQ(ierr);
1998660d5466SHong Zhang   cM = Cdense->rmap->N;
1999c5ef1628SHong Zhang   ierr = PetscMalloc3(cM*cN,&atb->sendbuf,cM*cN,&atb->atbarray,size,&atb->recvcounts);CHKERRQ(ierr);
2000baa3c1c6SHong Zhang 
2001baa3c1c6SHong Zhang   c                    = (Mat_MPIDense*)Cdense->data;
2002baa3c1c6SHong Zhang   c->atbdense          = atb;
2003baa3c1c6SHong Zhang   atb->destroy         = Cdense->ops->destroy;
2004baa3c1c6SHong Zhang   Cdense->ops->destroy = MatDestroy_MatTransMatMult_MPIDense_MPIDense;
2005cb20be35SHong Zhang   PetscFunctionReturn(0);
2006cb20be35SHong Zhang }
2007cb20be35SHong Zhang 
2008cb20be35SHong Zhang PetscErrorCode MatTransposeMatMult_MPIDense_MPIDense(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C)
2009cb20be35SHong Zhang {
2010cb20be35SHong Zhang   PetscErrorCode ierr;
2011cb20be35SHong Zhang 
2012cb20be35SHong Zhang   PetscFunctionBegin;
2013cb20be35SHong Zhang   if (scall == MAT_INITIAL_MATRIX) {
2014cb20be35SHong Zhang     ierr = MatTransposeMatMultSymbolic_MPIDense_MPIDense(A,B,fill,C);CHKERRQ(ierr);
2015cb20be35SHong Zhang   }
2016cb20be35SHong Zhang   ierr = MatTransposeMatMultNumeric_MPIDense_MPIDense(A,B,*C);CHKERRQ(ierr);
2017cb20be35SHong Zhang   PetscFunctionReturn(0);
2018cb20be35SHong Zhang }
2019320f2790SHong Zhang 
2020cc48ffa7SToby Isaac static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat A, Mat B, PetscReal fill, Mat *C)
2021cc48ffa7SToby Isaac {
2022cc48ffa7SToby Isaac   PetscErrorCode        ierr;
2023cc48ffa7SToby Isaac   Mat                   Cdense;
2024cc48ffa7SToby Isaac   MPI_Comm              comm;
2025cc48ffa7SToby Isaac   PetscMPIInt           i, size;
2026cc48ffa7SToby Isaac   PetscInt              maxRows, bufsiz;
2027cc48ffa7SToby Isaac   Mat_MPIDense          *c;
2028cc48ffa7SToby Isaac   PetscMPIInt           tag;
2029faa55883SToby Isaac   const char            *algTypes[2] = {"allgatherv","cyclic"};
2030faa55883SToby Isaac   PetscInt              alg, nalg = 2;
2031cc48ffa7SToby Isaac   Mat_MatTransMultDense *abt;
2032cc48ffa7SToby Isaac 
2033cc48ffa7SToby Isaac   PetscFunctionBegin;
2034cc48ffa7SToby Isaac   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
2035faa55883SToby Isaac   alg = 0; /* default is allgatherv */
2036faa55883SToby Isaac   ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)A),((PetscObject)A)->prefix,"MatMatTransposeMult","Mat");CHKERRQ(ierr);
2037faa55883SToby Isaac   ierr = PetscOptionsEList("-matmattransmult_mpidense_mpidense_via","Algorithmic approach","MatMatTransposeMult",algTypes,nalg,algTypes[0],&alg,NULL);CHKERRQ(ierr);
2038faa55883SToby Isaac   ierr = PetscOptionsEnd();CHKERRQ(ierr);
2039cc48ffa7SToby Isaac   if (A->cmap->N != B->cmap->N) {
2040cc48ffa7SToby Isaac     SETERRQ2(comm,PETSC_ERR_ARG_SIZ,"Matrix global column dimensions are incompatible, A (%D) != B (%D)",A->cmap->N,B->cmap->N);
2041cc48ffa7SToby Isaac   }
2042cc48ffa7SToby Isaac 
2043cc48ffa7SToby Isaac   /* create matrix product Cdense */
2044cc48ffa7SToby Isaac   ierr = MatCreate(comm,&Cdense);CHKERRQ(ierr);
2045cc48ffa7SToby Isaac   ierr = MatSetSizes(Cdense,A->rmap->n,B->rmap->n,A->rmap->N,B->rmap->N);CHKERRQ(ierr);
2046cc48ffa7SToby Isaac   ierr = MatSetType(Cdense,MATMPIDENSE);CHKERRQ(ierr);
2047cc48ffa7SToby Isaac   ierr = MatMPIDenseSetPreallocation(Cdense,NULL);CHKERRQ(ierr);
2048cc48ffa7SToby Isaac   ierr = PetscObjectGetNewTag((PetscObject)Cdense, &tag);CHKERRQ(ierr);
2049cc48ffa7SToby Isaac   ierr = MatAssemblyBegin(Cdense,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2050cc48ffa7SToby Isaac   ierr = MatAssemblyEnd(Cdense,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2051cc48ffa7SToby Isaac   *C   = Cdense;
2052cc48ffa7SToby Isaac 
2053cc48ffa7SToby Isaac   /* create data structure for reuse Cdense */
2054cc48ffa7SToby Isaac   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2055cc48ffa7SToby Isaac   ierr = PetscNew(&abt);CHKERRQ(ierr);
2056cc48ffa7SToby Isaac   abt->tag = tag;
2057faa55883SToby Isaac   abt->alg = alg;
2058faa55883SToby Isaac   switch (alg) {
2059faa55883SToby Isaac   case 1:
2060cc48ffa7SToby Isaac     for (maxRows = 0, i = 0; i < size; i++) maxRows = PetscMax(maxRows, (B->rmap->range[i + 1] - B->rmap->range[i]));
2061cc48ffa7SToby Isaac     bufsiz = A->cmap->N * maxRows;
2062cc48ffa7SToby Isaac     ierr = PetscMalloc2(bufsiz,&(abt->buf[0]),bufsiz,&(abt->buf[1]));CHKERRQ(ierr);
2063faa55883SToby Isaac     break;
2064faa55883SToby Isaac   default:
2065faa55883SToby Isaac     ierr = PetscMalloc2(B->rmap->n * B->cmap->N, &(abt->buf[0]), B->rmap->N * B->cmap->N, &(abt->buf[1]));CHKERRQ(ierr);
2066faa55883SToby Isaac     ierr = PetscMalloc2(size,&(abt->recvcounts),size+1,&(abt->recvdispls));CHKERRQ(ierr);
2067faa55883SToby Isaac     for (i = 0; i <= size; i++) abt->recvdispls[i] = B->rmap->range[i] * A->cmap->N;
2068faa55883SToby Isaac     for (i = 0; i < size; i++) abt->recvcounts[i] = abt->recvdispls[i + 1] - abt->recvdispls[i];
2069faa55883SToby Isaac     break;
2070faa55883SToby Isaac   }
2071cc48ffa7SToby Isaac 
2072cc48ffa7SToby Isaac   c                    = (Mat_MPIDense*)Cdense->data;
2073cc48ffa7SToby Isaac   c->abtdense          = abt;
2074cc48ffa7SToby Isaac   abt->destroy         = Cdense->ops->destroy;
2075cc48ffa7SToby Isaac   Cdense->ops->destroy = MatDestroy_MatMatTransMult_MPIDense_MPIDense;
2076cc48ffa7SToby Isaac   PetscFunctionReturn(0);
2077cc48ffa7SToby Isaac }
2078cc48ffa7SToby Isaac 
2079faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(Mat A, Mat B, Mat C)
2080cc48ffa7SToby Isaac {
2081cc48ffa7SToby Isaac   Mat_MPIDense   *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data;
2082cc48ffa7SToby Isaac   Mat_SeqDense   *aseq=(Mat_SeqDense*)(a->A)->data, *bseq=(Mat_SeqDense*)(b->A)->data;
2083cc48ffa7SToby Isaac   Mat_SeqDense   *cseq=(Mat_SeqDense*)(c->A)->data;
2084cc48ffa7SToby Isaac   Mat_MatTransMultDense *abt = c->abtdense;
2085cc48ffa7SToby Isaac   PetscErrorCode ierr;
2086cc48ffa7SToby Isaac   MPI_Comm       comm;
2087cc48ffa7SToby Isaac   PetscMPIInt    rank,size, sendsiz, recvsiz, sendto, recvfrom, recvisfrom;
2088ce36caf3SSatish Balay   PetscScalar    *sendbuf, *recvbuf=0, *carray;
2089cc48ffa7SToby Isaac   PetscInt       i,cK=A->cmap->N,k,j,bn;
2090cc48ffa7SToby Isaac   PetscScalar    _DOne=1.0,_DZero=0.0;
2091cc48ffa7SToby Isaac   PetscBLASInt   cm, cn, ck;
2092cc48ffa7SToby Isaac   MPI_Request    reqs[2];
2093cc48ffa7SToby Isaac   const PetscInt *ranges;
2094cc48ffa7SToby Isaac 
2095cc48ffa7SToby Isaac   PetscFunctionBegin;
2096cc48ffa7SToby Isaac   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
2097cc48ffa7SToby Isaac   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
2098cc48ffa7SToby Isaac   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2099cc48ffa7SToby Isaac 
2100cc48ffa7SToby Isaac   ierr = MatGetOwnershipRanges(B,&ranges);CHKERRQ(ierr);
2101cc48ffa7SToby Isaac   bn = B->rmap->n;
2102cc48ffa7SToby Isaac   if (bseq->lda == bn) {
2103cc48ffa7SToby Isaac     sendbuf = bseq->v;
2104cc48ffa7SToby Isaac   } else {
2105cc48ffa7SToby Isaac     sendbuf = abt->buf[0];
2106cc48ffa7SToby Isaac     for (k = 0, i = 0; i < cK; i++) {
2107cc48ffa7SToby Isaac       for (j = 0; j < bn; j++, k++) {
2108cc48ffa7SToby Isaac         sendbuf[k] = bseq->v[i * bseq->lda + j];
2109cc48ffa7SToby Isaac       }
2110cc48ffa7SToby Isaac     }
2111cc48ffa7SToby Isaac   }
2112cc48ffa7SToby Isaac   if (size > 1) {
2113cc48ffa7SToby Isaac     sendto = (rank + size - 1) % size;
2114cc48ffa7SToby Isaac     recvfrom = (rank + size + 1) % size;
2115cc48ffa7SToby Isaac   } else {
2116cc48ffa7SToby Isaac     sendto = recvfrom = 0;
2117cc48ffa7SToby Isaac   }
2118cc48ffa7SToby Isaac   ierr = PetscBLASIntCast(cK,&ck);CHKERRQ(ierr);
2119cc48ffa7SToby Isaac   ierr = PetscBLASIntCast(c->A->rmap->n,&cm);CHKERRQ(ierr);
2120cc48ffa7SToby Isaac   recvisfrom = rank;
2121cc48ffa7SToby Isaac   for (i = 0; i < size; i++) {
2122cc48ffa7SToby Isaac     /* we have finished receiving in sending, bufs can be read/modified */
2123cc48ffa7SToby Isaac     PetscInt nextrecvisfrom = (recvisfrom + 1) % size; /* which process the next recvbuf will originate on */
2124cc48ffa7SToby Isaac     PetscInt nextbn = ranges[nextrecvisfrom + 1] - ranges[nextrecvisfrom];
2125cc48ffa7SToby Isaac 
2126cc48ffa7SToby Isaac     if (nextrecvisfrom != rank) {
2127cc48ffa7SToby Isaac       /* start the cyclic sends from sendbuf, to recvbuf (which will switch to sendbuf) */
2128cc48ffa7SToby Isaac       sendsiz = cK * bn;
2129cc48ffa7SToby Isaac       recvsiz = cK * nextbn;
2130cc48ffa7SToby Isaac       recvbuf = (i & 1) ? abt->buf[0] : abt->buf[1];
2131cc48ffa7SToby Isaac       ierr = MPI_Isend(sendbuf, sendsiz, MPIU_SCALAR, sendto, abt->tag, comm, &reqs[0]);CHKERRQ(ierr);
2132cc48ffa7SToby Isaac       ierr = MPI_Irecv(recvbuf, recvsiz, MPIU_SCALAR, recvfrom, abt->tag, comm, &reqs[1]);CHKERRQ(ierr);
2133cc48ffa7SToby Isaac     }
2134cc48ffa7SToby Isaac 
2135cc48ffa7SToby Isaac     /* local aseq * sendbuf^T */
2136cc48ffa7SToby Isaac     ierr = PetscBLASIntCast(ranges[recvisfrom + 1] - ranges[recvisfrom], &cn);CHKERRQ(ierr);
2137cc48ffa7SToby Isaac     carray = &cseq->v[cseq->lda * ranges[recvisfrom]];
2138cc48ffa7SToby Isaac     PetscStackCallBLAS("BLASgemm",BLASgemm_("N","T",&cm,&cn,&ck,&_DOne,aseq->v,&aseq->lda,sendbuf,&cn,&_DZero,carray,&cseq->lda));
2139cc48ffa7SToby Isaac 
2140cc48ffa7SToby Isaac     if (nextrecvisfrom != rank) {
2141cc48ffa7SToby Isaac       /* wait for the sends and receives to complete, swap sendbuf and recvbuf */
2142cc48ffa7SToby Isaac       ierr = MPI_Waitall(2, reqs, MPI_STATUSES_IGNORE);CHKERRQ(ierr);
2143cc48ffa7SToby Isaac     }
2144cc48ffa7SToby Isaac     bn = nextbn;
2145cc48ffa7SToby Isaac     recvisfrom = nextrecvisfrom;
2146cc48ffa7SToby Isaac     sendbuf = recvbuf;
2147cc48ffa7SToby Isaac   }
2148cc48ffa7SToby Isaac   PetscFunctionReturn(0);
2149cc48ffa7SToby Isaac }
2150cc48ffa7SToby Isaac 
2151faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(Mat A, Mat B, Mat C)
2152faa55883SToby Isaac {
2153faa55883SToby Isaac   Mat_MPIDense   *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data;
2154faa55883SToby Isaac   Mat_SeqDense   *aseq=(Mat_SeqDense*)(a->A)->data, *bseq=(Mat_SeqDense*)(b->A)->data;
2155faa55883SToby Isaac   Mat_SeqDense   *cseq=(Mat_SeqDense*)(c->A)->data;
2156faa55883SToby Isaac   Mat_MatTransMultDense *abt = c->abtdense;
2157faa55883SToby Isaac   PetscErrorCode ierr;
2158faa55883SToby Isaac   MPI_Comm       comm;
2159faa55883SToby Isaac   PetscMPIInt    rank,size;
2160faa55883SToby Isaac   PetscScalar    *sendbuf, *recvbuf;
2161faa55883SToby Isaac   PetscInt       i,cK=A->cmap->N,k,j,bn;
2162faa55883SToby Isaac   PetscScalar    _DOne=1.0,_DZero=0.0;
2163faa55883SToby Isaac   PetscBLASInt   cm, cn, ck;
2164faa55883SToby Isaac 
2165faa55883SToby Isaac   PetscFunctionBegin;
2166faa55883SToby Isaac   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
2167faa55883SToby Isaac   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
2168faa55883SToby Isaac   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2169faa55883SToby Isaac 
2170faa55883SToby Isaac   /* copy transpose of B into buf[0] */
2171faa55883SToby Isaac   bn      = B->rmap->n;
2172faa55883SToby Isaac   sendbuf = abt->buf[0];
2173faa55883SToby Isaac   recvbuf = abt->buf[1];
2174faa55883SToby Isaac   for (k = 0, j = 0; j < bn; j++) {
2175faa55883SToby Isaac     for (i = 0; i < cK; i++, k++) {
2176faa55883SToby Isaac       sendbuf[k] = bseq->v[i * bseq->lda + j];
2177faa55883SToby Isaac     }
2178faa55883SToby Isaac   }
2179faa55883SToby Isaac   ierr = MPI_Allgatherv(sendbuf, bn * cK, MPIU_SCALAR, recvbuf, abt->recvcounts, abt->recvdispls, MPIU_SCALAR, comm);CHKERRQ(ierr);
2180faa55883SToby Isaac   ierr = PetscBLASIntCast(cK,&ck);CHKERRQ(ierr);
2181faa55883SToby Isaac   ierr = PetscBLASIntCast(c->A->rmap->n,&cm);CHKERRQ(ierr);
2182faa55883SToby Isaac   ierr = PetscBLASIntCast(c->A->cmap->n,&cn);CHKERRQ(ierr);
2183faa55883SToby Isaac   PetscStackCallBLAS("BLASgemm",BLASgemm_("N","N",&cm,&cn,&ck,&_DOne,aseq->v,&aseq->lda,recvbuf,&ck,&_DZero,cseq->v,&cseq->lda));
2184faa55883SToby Isaac   PetscFunctionReturn(0);
2185faa55883SToby Isaac }
2186faa55883SToby Isaac 
2187faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat A, Mat B, Mat C)
2188faa55883SToby Isaac {
2189faa55883SToby Isaac   Mat_MPIDense   *c=(Mat_MPIDense*)C->data;
2190faa55883SToby Isaac   Mat_MatTransMultDense *abt = c->abtdense;
2191faa55883SToby Isaac   PetscErrorCode ierr;
2192faa55883SToby Isaac 
2193faa55883SToby Isaac   PetscFunctionBegin;
2194faa55883SToby Isaac   switch (abt->alg) {
2195faa55883SToby Isaac   case 1:
2196faa55883SToby Isaac     ierr = MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(A, B, C);CHKERRQ(ierr);
2197faa55883SToby Isaac     break;
2198faa55883SToby Isaac   default:
2199faa55883SToby Isaac     ierr = MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(A, B, C);CHKERRQ(ierr);
2200faa55883SToby Isaac     break;
2201faa55883SToby Isaac   }
2202faa55883SToby Isaac   PetscFunctionReturn(0);
2203faa55883SToby Isaac }
2204faa55883SToby Isaac 
2205cc48ffa7SToby Isaac static PetscErrorCode MatMatTransposeMult_MPIDense_MPIDense(Mat A,Mat B, MatReuse scall, PetscReal fill, Mat *C)
2206cc48ffa7SToby Isaac {
2207cc48ffa7SToby Isaac   PetscErrorCode ierr;
2208cc48ffa7SToby Isaac 
2209cc48ffa7SToby Isaac   PetscFunctionBegin;
2210cc48ffa7SToby Isaac   if (scall == MAT_INITIAL_MATRIX) {
2211cc48ffa7SToby Isaac     ierr = MatMatTransposeMultSymbolic_MPIDense_MPIDense(A,B,fill,C);CHKERRQ(ierr);
2212cc48ffa7SToby Isaac   }
2213cc48ffa7SToby Isaac   ierr = MatMatTransposeMultNumeric_MPIDense_MPIDense(A,B,*C);CHKERRQ(ierr);
2214cc48ffa7SToby Isaac   PetscFunctionReturn(0);
2215cc48ffa7SToby Isaac }
2216cc48ffa7SToby Isaac 
2217320f2790SHong Zhang PetscErrorCode MatDestroy_MatMatMult_MPIDense_MPIDense(Mat A)
2218320f2790SHong Zhang {
2219320f2790SHong Zhang   PetscErrorCode   ierr;
2220320f2790SHong Zhang   Mat_MPIDense     *a = (Mat_MPIDense*)A->data;
2221320f2790SHong Zhang   Mat_MatMultDense *ab = a->abdense;
2222320f2790SHong Zhang 
2223320f2790SHong Zhang   PetscFunctionBegin;
2224320f2790SHong Zhang   ierr = MatDestroy(&ab->Ce);CHKERRQ(ierr);
2225320f2790SHong Zhang   ierr = MatDestroy(&ab->Ae);CHKERRQ(ierr);
2226320f2790SHong Zhang   ierr = MatDestroy(&ab->Be);CHKERRQ(ierr);
2227320f2790SHong Zhang 
2228320f2790SHong Zhang   ierr = (ab->destroy)(A);CHKERRQ(ierr);
2229320f2790SHong Zhang   ierr = PetscFree(ab);CHKERRQ(ierr);
2230320f2790SHong Zhang   PetscFunctionReturn(0);
2231320f2790SHong Zhang }
2232320f2790SHong Zhang 
22335242a7b1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
2234320f2790SHong Zhang PetscErrorCode MatMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C)
2235320f2790SHong Zhang {
2236320f2790SHong Zhang   PetscErrorCode   ierr;
2237320f2790SHong Zhang   Mat_MPIDense     *c=(Mat_MPIDense*)C->data;
2238320f2790SHong Zhang   Mat_MatMultDense *ab=c->abdense;
2239320f2790SHong Zhang 
2240320f2790SHong Zhang   PetscFunctionBegin;
2241de0a22f0SHong Zhang   ierr = MatConvert_MPIDense_Elemental(A,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Ae);CHKERRQ(ierr);
2242de0a22f0SHong Zhang   ierr = MatConvert_MPIDense_Elemental(B,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Be);CHKERRQ(ierr);
2243320f2790SHong Zhang   ierr = MatMatMultNumeric(ab->Ae,ab->Be,ab->Ce);CHKERRQ(ierr);
2244de0a22f0SHong Zhang   ierr = MatConvert(ab->Ce,MATMPIDENSE,MAT_REUSE_MATRIX,&C);CHKERRQ(ierr);
2245320f2790SHong Zhang   PetscFunctionReturn(0);
2246320f2790SHong Zhang }
2247320f2790SHong Zhang 
2248320f2790SHong Zhang PetscErrorCode MatMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat *C)
2249320f2790SHong Zhang {
2250320f2790SHong Zhang   PetscErrorCode   ierr;
2251320f2790SHong Zhang   Mat              Ae,Be,Ce;
2252320f2790SHong Zhang   Mat_MPIDense     *c;
2253320f2790SHong Zhang   Mat_MatMultDense *ab;
2254320f2790SHong Zhang 
2255320f2790SHong Zhang   PetscFunctionBegin;
2256320f2790SHong Zhang   if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend) {
2257378336b6SHong Zhang     SETERRQ4(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != B (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend);
2258320f2790SHong Zhang   }
2259320f2790SHong Zhang 
2260320f2790SHong Zhang   /* convert A and B to Elemental matrices Ae and Be */
2261320f2790SHong Zhang   ierr = MatConvert(A,MATELEMENTAL,MAT_INITIAL_MATRIX, &Ae);CHKERRQ(ierr);
2262320f2790SHong Zhang   ierr = MatConvert(B,MATELEMENTAL,MAT_INITIAL_MATRIX, &Be);CHKERRQ(ierr);
2263320f2790SHong Zhang 
2264320f2790SHong Zhang   /* Ce = Ae*Be */
2265320f2790SHong Zhang   ierr = MatMatMultSymbolic(Ae,Be,fill,&Ce);CHKERRQ(ierr);
2266320f2790SHong Zhang   ierr = MatMatMultNumeric(Ae,Be,Ce);CHKERRQ(ierr);
2267320f2790SHong Zhang 
2268320f2790SHong Zhang   /* convert Ce to C */
2269320f2790SHong Zhang   ierr = MatConvert(Ce,MATMPIDENSE,MAT_INITIAL_MATRIX,C);CHKERRQ(ierr);
2270320f2790SHong Zhang 
2271320f2790SHong Zhang   /* create data structure for reuse Cdense */
2272320f2790SHong Zhang   ierr = PetscNew(&ab);CHKERRQ(ierr);
2273320f2790SHong Zhang   c                  = (Mat_MPIDense*)(*C)->data;
2274320f2790SHong Zhang   c->abdense         = ab;
2275320f2790SHong Zhang 
2276320f2790SHong Zhang   ab->Ae             = Ae;
2277320f2790SHong Zhang   ab->Be             = Be;
2278320f2790SHong Zhang   ab->Ce             = Ce;
2279320f2790SHong Zhang   ab->destroy        = (*C)->ops->destroy;
2280320f2790SHong Zhang   (*C)->ops->destroy        = MatDestroy_MatMatMult_MPIDense_MPIDense;
22819775878aSHong Zhang   (*C)->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIDense;
2282320f2790SHong Zhang   PetscFunctionReturn(0);
2283320f2790SHong Zhang }
2284320f2790SHong Zhang 
2285150d2497SBarry Smith PETSC_INTERN PetscErrorCode MatMatMult_MPIDense_MPIDense(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C)
2286320f2790SHong Zhang {
2287320f2790SHong Zhang   PetscErrorCode ierr;
2288320f2790SHong Zhang 
2289320f2790SHong Zhang   PetscFunctionBegin;
2290320f2790SHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* simbolic product includes numeric product */
229157299f2fSHong Zhang     ierr = PetscLogEventBegin(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr);
2292320f2790SHong Zhang     ierr = MatMatMultSymbolic_MPIDense_MPIDense(A,B,fill,C);CHKERRQ(ierr);
229357299f2fSHong Zhang     ierr = PetscLogEventEnd(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr);
2294320f2790SHong Zhang   } else {
229557299f2fSHong Zhang     ierr = PetscLogEventBegin(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr);
2296320f2790SHong Zhang     ierr = MatMatMultNumeric_MPIDense_MPIDense(A,B,*C);CHKERRQ(ierr);
229757299f2fSHong Zhang     ierr = PetscLogEventEnd(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr);
2298320f2790SHong Zhang   }
2299320f2790SHong Zhang   PetscFunctionReturn(0);
2300320f2790SHong Zhang }
23015242a7b1SHong Zhang #endif
230286aefd0dSHong Zhang 
2303