1*4a2ae208SSatish Balay /*$Id: mpidense.c,v 1.152 2001/03/23 22:04:53 bsmith Exp balay $*/ 28965ea79SLois Curfman McInnes 3ed3cc1f0SBarry Smith /* 4ed3cc1f0SBarry Smith Basic functions for basic parallel dense matrices. 5ed3cc1f0SBarry Smith */ 6ed3cc1f0SBarry Smith 770f55243SBarry Smith #include "src/mat/impls/dense/mpi/mpidense.h" 8f5eb4b81SSatish Balay #include "src/vec/vecimpl.h" 98965ea79SLois Curfman McInnes 100de54da6SSatish Balay EXTERN_C_BEGIN 11*4a2ae208SSatish Balay #undef __FUNCT__ 12*4a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIDense" 130de54da6SSatish Balay int MatGetDiagonalBlock_MPIDense(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *B) 140de54da6SSatish Balay { 150de54da6SSatish Balay Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 16cfce73b9SSatish Balay int m = A->m,rstart = mdn->rstart,ierr; 170de54da6SSatish Balay Scalar *array; 180de54da6SSatish Balay MPI_Comm comm; 190de54da6SSatish Balay 200de54da6SSatish Balay PetscFunctionBegin; 21273d9f13SBarry Smith if (A->M != A->N) SETERRQ(PETSC_ERR_SUP,"Only square matrices supported."); 220de54da6SSatish Balay 230de54da6SSatish Balay /* The reuse aspect is not implemented efficiently */ 240de54da6SSatish Balay if (reuse) { ierr = MatDestroy(*B);CHKERRQ(ierr);} 250de54da6SSatish Balay 260de54da6SSatish Balay ierr = PetscObjectGetComm((PetscObject)(mdn->A),&comm);CHKERRQ(ierr); 270de54da6SSatish Balay ierr = MatGetArray(mdn->A,&array);CHKERRQ(ierr); 280de54da6SSatish Balay ierr = MatCreateSeqDense(comm,m,m,array+m*rstart,B);CHKERRQ(ierr); 290de54da6SSatish Balay ierr = MatRestoreArray(mdn->A,&array);CHKERRQ(ierr); 300de54da6SSatish Balay ierr = MatAssemblyBegin(*B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 310de54da6SSatish Balay ierr = MatAssemblyEnd(*B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 320de54da6SSatish Balay 330de54da6SSatish Balay *iscopy = PETSC_TRUE; 340de54da6SSatish Balay PetscFunctionReturn(0); 350de54da6SSatish Balay } 360de54da6SSatish Balay EXTERN_C_END 370de54da6SSatish Balay 38ca44d042SBarry Smith EXTERN int MatSetUpMultiply_MPIDense(Mat); 397ef1d9bdSSatish Balay 40*4a2ae208SSatish Balay #undef __FUNCT__ 41*4a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIDense" 428f6be9afSLois Curfman McInnes int MatSetValues_MPIDense(Mat mat,int m,int *idxm,int n,int *idxn,Scalar *v,InsertMode addv) 438965ea79SLois Curfman McInnes { 4439b7565bSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)mat->data; 4539b7565bSBarry Smith int ierr,i,j,rstart = A->rstart,rend = A->rend,row; 46273d9f13SBarry Smith PetscTruth roworiented = A->roworiented; 478965ea79SLois Curfman McInnes 483a40ed3dSBarry Smith PetscFunctionBegin; 498965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 505ef9f2a5SBarry Smith if (idxm[i] < 0) continue; 51273d9f13SBarry Smith if (idxm[i] >= mat->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 528965ea79SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 538965ea79SLois Curfman McInnes row = idxm[i] - rstart; 5439b7565bSBarry Smith if (roworiented) { 5539b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv);CHKERRQ(ierr); 563a40ed3dSBarry Smith } else { 578965ea79SLois Curfman McInnes for (j=0; j<n; j++) { 585ef9f2a5SBarry Smith if (idxn[j] < 0) continue; 59273d9f13SBarry Smith if (idxn[j] >= mat->N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 6039b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv);CHKERRQ(ierr); 6139b7565bSBarry Smith } 628965ea79SLois Curfman McInnes } 633a40ed3dSBarry Smith } else { 643782ba37SSatish Balay if (!A->donotstash) { 6539b7565bSBarry Smith if (roworiented) { 668798bf22SSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,idxm[i],n,idxn,v+i*n);CHKERRQ(ierr); 67d36fbae8SSatish Balay } else { 688798bf22SSatish Balay ierr = MatStashValuesCol_Private(&mat->stash,idxm[i],n,idxn,v+i,m);CHKERRQ(ierr); 6939b7565bSBarry Smith } 70b49de8d1SLois Curfman McInnes } 71b49de8d1SLois Curfman McInnes } 723782ba37SSatish Balay } 733a40ed3dSBarry Smith PetscFunctionReturn(0); 74b49de8d1SLois Curfman McInnes } 75b49de8d1SLois Curfman McInnes 76*4a2ae208SSatish Balay #undef __FUNCT__ 77*4a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIDense" 788f6be9afSLois Curfman McInnes int MatGetValues_MPIDense(Mat mat,int m,int *idxm,int n,int *idxn,Scalar *v) 79b49de8d1SLois Curfman McInnes { 80b49de8d1SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 81b49de8d1SLois Curfman McInnes int ierr,i,j,rstart = mdn->rstart,rend = mdn->rend,row; 82b49de8d1SLois Curfman McInnes 833a40ed3dSBarry Smith PetscFunctionBegin; 84b49de8d1SLois Curfman McInnes for (i=0; i<m; i++) { 8529bbc08cSBarry Smith if (idxm[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); 86273d9f13SBarry Smith if (idxm[i] >= mat->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 87b49de8d1SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 88b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 89b49de8d1SLois Curfman McInnes for (j=0; j<n; j++) { 9029bbc08cSBarry Smith if (idxn[j] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); 91273d9f13SBarry Smith if (idxn[j] >= mat->N) { 9229bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 93a8c6a408SBarry Smith } 94b49de8d1SLois Curfman McInnes ierr = MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j);CHKERRQ(ierr); 95b49de8d1SLois Curfman McInnes } 96a8c6a408SBarry Smith } else { 9729bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 988965ea79SLois Curfman McInnes } 998965ea79SLois Curfman McInnes } 1003a40ed3dSBarry Smith PetscFunctionReturn(0); 1018965ea79SLois Curfman McInnes } 1028965ea79SLois Curfman McInnes 103*4a2ae208SSatish Balay #undef __FUNCT__ 104*4a2ae208SSatish Balay #define __FUNCT__ "MatGetArray_MPIDense" 1058f6be9afSLois Curfman McInnes int MatGetArray_MPIDense(Mat A,Scalar **array) 106ff14e315SSatish Balay { 107ff14e315SSatish Balay Mat_MPIDense *a = (Mat_MPIDense*)A->data; 108ff14e315SSatish Balay int ierr; 109ff14e315SSatish Balay 1103a40ed3dSBarry Smith PetscFunctionBegin; 111ff14e315SSatish Balay ierr = MatGetArray(a->A,array);CHKERRQ(ierr); 1123a40ed3dSBarry Smith PetscFunctionReturn(0); 113ff14e315SSatish Balay } 114ff14e315SSatish Balay 115*4a2ae208SSatish Balay #undef __FUNCT__ 116*4a2ae208SSatish Balay #define __FUNCT__ "MatGetSubMatrix_MPIDense" 117ca3fa75bSLois Curfman McInnes static int MatGetSubMatrix_MPIDense(Mat A,IS isrow,IS iscol,int cs,MatReuse scall,Mat *B) 118ca3fa75bSLois Curfman McInnes { 119ca3fa75bSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data,*newmatd; 120ca3fa75bSLois Curfman McInnes Mat_SeqDense *lmat = (Mat_SeqDense*)mat->A->data; 121cfce73b9SSatish Balay int i,j,ierr,*irow,*icol,rstart,rend,nrows,ncols,nlrows,nlcols; 122ca3fa75bSLois Curfman McInnes Scalar *av,*bv,*v = lmat->v; 123ca3fa75bSLois Curfman McInnes Mat newmat; 124ca3fa75bSLois Curfman McInnes 125ca3fa75bSLois Curfman McInnes PetscFunctionBegin; 126ca3fa75bSLois Curfman McInnes ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr); 127ca3fa75bSLois Curfman McInnes ierr = ISGetIndices(iscol,&icol);CHKERRQ(ierr); 128b9b97703SBarry Smith ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr); 129b9b97703SBarry Smith ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr); 130ca3fa75bSLois Curfman McInnes 131ca3fa75bSLois Curfman McInnes /* No parallel redistribution currently supported! Should really check each index set 1327eba5e9cSLois Curfman McInnes to comfirm that it is OK. ... Currently supports only submatrix same partitioning as 1337eba5e9cSLois Curfman McInnes original matrix! */ 134ca3fa75bSLois Curfman McInnes 135ca3fa75bSLois Curfman McInnes ierr = MatGetLocalSize(A,&nlrows,&nlcols);CHKERRQ(ierr); 1367eba5e9cSLois Curfman McInnes ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr); 137ca3fa75bSLois Curfman McInnes 138ca3fa75bSLois Curfman McInnes /* Check submatrix call */ 139ca3fa75bSLois Curfman McInnes if (scall == MAT_REUSE_MATRIX) { 14029bbc08cSBarry Smith /* SETERRQ(PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */ 1417eba5e9cSLois Curfman McInnes /* Really need to test rows and column sizes! */ 142ca3fa75bSLois Curfman McInnes newmat = *B; 143ca3fa75bSLois Curfman McInnes } else { 144ca3fa75bSLois Curfman McInnes /* Create and fill new matrix */ 14532828cfdSBarry Smith ierr = MatCreateMPIDense(A->comm,nrows,cs,PETSC_DECIDE,ncols,PETSC_NULL,&newmat);CHKERRQ(ierr); 146ca3fa75bSLois Curfman McInnes } 147ca3fa75bSLois Curfman McInnes 148ca3fa75bSLois Curfman McInnes /* Now extract the data pointers and do the copy, column at a time */ 149ca3fa75bSLois Curfman McInnes newmatd = (Mat_MPIDense*)newmat->data; 150ca3fa75bSLois Curfman McInnes bv = ((Mat_SeqDense *)newmatd->A->data)->v; 151ca3fa75bSLois Curfman McInnes 152ca3fa75bSLois Curfman McInnes for (i=0; i<ncols; i++) { 153ca3fa75bSLois Curfman McInnes av = v + nlrows*icol[i]; 154ca3fa75bSLois Curfman McInnes for (j=0; j<nrows; j++) { 1557eba5e9cSLois Curfman McInnes *bv++ = av[irow[j] - rstart]; 156ca3fa75bSLois Curfman McInnes } 157ca3fa75bSLois Curfman McInnes } 158ca3fa75bSLois Curfman McInnes 159ca3fa75bSLois Curfman McInnes /* Assemble the matrices so that the correct flags are set */ 160ca3fa75bSLois Curfman McInnes ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 161ca3fa75bSLois Curfman McInnes ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 162ca3fa75bSLois Curfman McInnes 163ca3fa75bSLois Curfman McInnes /* Free work space */ 164ca3fa75bSLois Curfman McInnes ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr); 165ca3fa75bSLois Curfman McInnes ierr = ISRestoreIndices(iscol,&icol);CHKERRQ(ierr); 166ca3fa75bSLois Curfman McInnes *B = newmat; 167ca3fa75bSLois Curfman McInnes PetscFunctionReturn(0); 168ca3fa75bSLois Curfman McInnes } 169ca3fa75bSLois Curfman McInnes 170*4a2ae208SSatish Balay #undef __FUNCT__ 171*4a2ae208SSatish Balay #define __FUNCT__ "MatRestoreArray_MPIDense" 1728f6be9afSLois Curfman McInnes int MatRestoreArray_MPIDense(Mat A,Scalar **array) 173ff14e315SSatish Balay { 1743a40ed3dSBarry Smith PetscFunctionBegin; 1753a40ed3dSBarry Smith PetscFunctionReturn(0); 176ff14e315SSatish Balay } 177ff14e315SSatish Balay 178*4a2ae208SSatish Balay #undef __FUNCT__ 179*4a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIDense" 1808f6be9afSLois Curfman McInnes int MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode) 1818965ea79SLois Curfman McInnes { 18239ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 1838965ea79SLois Curfman McInnes MPI_Comm comm = mat->comm; 184d36fbae8SSatish Balay int ierr,nstash,reallocs; 1858965ea79SLois Curfman McInnes InsertMode addv; 1868965ea79SLois Curfman McInnes 1873a40ed3dSBarry Smith PetscFunctionBegin; 1888965ea79SLois Curfman McInnes /* make sure all processors are either in INSERTMODE or ADDMODE */ 189ca161407SBarry Smith ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,comm);CHKERRQ(ierr); 1907056b6fcSBarry Smith if (addv == (ADD_VALUES|INSERT_VALUES)) { 19129bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Cannot mix adds/inserts on different procs"); 1928965ea79SLois Curfman McInnes } 193e0fa3b82SLois Curfman McInnes mat->insertmode = addv; /* in case this processor had no cache */ 1948965ea79SLois Curfman McInnes 1958798bf22SSatish Balay ierr = MatStashScatterBegin_Private(&mat->stash,mdn->rowners);CHKERRQ(ierr); 1968798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 197b0a32e0cSBarry Smith PetscLogInfo(mdn->A,"MatAssemblyBegin_MPIDense:Stash has %d entries, uses %d mallocs.\n",nstash,reallocs); 1983a40ed3dSBarry Smith PetscFunctionReturn(0); 1998965ea79SLois Curfman McInnes } 2008965ea79SLois Curfman McInnes 201*4a2ae208SSatish Balay #undef __FUNCT__ 202*4a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIDense" 2038f6be9afSLois Curfman McInnes int MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode) 2048965ea79SLois Curfman McInnes { 20539ddd567SLois Curfman McInnes Mat_MPIDense *mdn=(Mat_MPIDense*)mat->data; 2067ef1d9bdSSatish Balay int i,n,ierr,*row,*col,flg,j,rstart,ncols; 2077ef1d9bdSSatish Balay Scalar *val; 208e0fa3b82SLois Curfman McInnes InsertMode addv=mat->insertmode; 2098965ea79SLois Curfman McInnes 2103a40ed3dSBarry Smith PetscFunctionBegin; 2118965ea79SLois Curfman McInnes /* wait on receives */ 2127ef1d9bdSSatish Balay while (1) { 2138798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 2147ef1d9bdSSatish Balay if (!flg) break; 2158965ea79SLois Curfman McInnes 2167ef1d9bdSSatish Balay for (i=0; i<n;) { 2177ef1d9bdSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 2187ef1d9bdSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 2197ef1d9bdSSatish Balay if (j < n) ncols = j-i; 2207ef1d9bdSSatish Balay else ncols = n-i; 2217ef1d9bdSSatish Balay /* Now assemble all these values with a single function call */ 2227ef1d9bdSSatish Balay ierr = MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 2237ef1d9bdSSatish Balay i = j; 2248965ea79SLois Curfman McInnes } 2257ef1d9bdSSatish Balay } 2268798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 2278965ea79SLois Curfman McInnes 22839ddd567SLois Curfman McInnes ierr = MatAssemblyBegin(mdn->A,mode);CHKERRQ(ierr); 22939ddd567SLois Curfman McInnes ierr = MatAssemblyEnd(mdn->A,mode);CHKERRQ(ierr); 2308965ea79SLois Curfman McInnes 2316d4a8577SBarry Smith if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 23239ddd567SLois Curfman McInnes ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 2338965ea79SLois Curfman McInnes } 2343a40ed3dSBarry Smith PetscFunctionReturn(0); 2358965ea79SLois Curfman McInnes } 2368965ea79SLois Curfman McInnes 237*4a2ae208SSatish Balay #undef __FUNCT__ 238*4a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIDense" 2398f6be9afSLois Curfman McInnes int MatZeroEntries_MPIDense(Mat A) 2408965ea79SLois Curfman McInnes { 2413a40ed3dSBarry Smith int ierr; 24239ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 2433a40ed3dSBarry Smith 2443a40ed3dSBarry Smith PetscFunctionBegin; 2453a40ed3dSBarry Smith ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 2463a40ed3dSBarry Smith PetscFunctionReturn(0); 2478965ea79SLois Curfman McInnes } 2488965ea79SLois Curfman McInnes 249*4a2ae208SSatish Balay #undef __FUNCT__ 250*4a2ae208SSatish Balay #define __FUNCT__ "MatGetBlockSize_MPIDense" 2518f6be9afSLois Curfman McInnes int MatGetBlockSize_MPIDense(Mat A,int *bs) 2524e220ebcSLois Curfman McInnes { 2533a40ed3dSBarry Smith PetscFunctionBegin; 2544e220ebcSLois Curfman McInnes *bs = 1; 2553a40ed3dSBarry Smith PetscFunctionReturn(0); 2564e220ebcSLois Curfman McInnes } 2574e220ebcSLois Curfman McInnes 2588965ea79SLois Curfman McInnes /* the code does not do the diagonal entries correctly unless the 2598965ea79SLois Curfman McInnes matrix is square and the column and row owerships are identical. 2608965ea79SLois Curfman McInnes This is a BUG. The only way to fix it seems to be to access 2613501a2bdSLois Curfman McInnes mdn->A and mdn->B directly and not through the MatZeroRows() 2628965ea79SLois Curfman McInnes routine. 2638965ea79SLois Curfman McInnes */ 264*4a2ae208SSatish Balay #undef __FUNCT__ 265*4a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIDense" 2668f6be9afSLois Curfman McInnes int MatZeroRows_MPIDense(Mat A,IS is,Scalar *diag) 2678965ea79SLois Curfman McInnes { 26839ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 2698965ea79SLois Curfman McInnes int i,ierr,N,*rows,*owners = l->rowners,size = l->size; 27035d8aa7fSBarry Smith int *procs,*nprocs,j,idx,nsends,*work; 2718965ea79SLois Curfman McInnes int nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank; 2728965ea79SLois Curfman McInnes int *rvalues,tag = A->tag,count,base,slen,n,*source; 2738965ea79SLois Curfman McInnes int *lens,imdex,*lrows,*values; 2748965ea79SLois Curfman McInnes MPI_Comm comm = A->comm; 2758965ea79SLois Curfman McInnes MPI_Request *send_waits,*recv_waits; 2768965ea79SLois Curfman McInnes MPI_Status recv_status,*send_status; 2778965ea79SLois Curfman McInnes IS istmp; 27835d8aa7fSBarry Smith PetscTruth found; 2798965ea79SLois Curfman McInnes 2803a40ed3dSBarry Smith PetscFunctionBegin; 281b9b97703SBarry Smith ierr = ISGetLocalSize(is,&N);CHKERRQ(ierr); 2828965ea79SLois Curfman McInnes ierr = ISGetIndices(is,&rows);CHKERRQ(ierr); 2838965ea79SLois Curfman McInnes 2848965ea79SLois Curfman McInnes /* first count number of contributors to each processor */ 285b0a32e0cSBarry Smith ierr = PetscMalloc(2*size*sizeof(int),&nprocs);CHKERRQ(ierr); 286549d3d68SSatish Balay ierr = PetscMemzero(nprocs,2*size*sizeof(int));CHKERRQ(ierr); 287549d3d68SSatish Balay procs = nprocs + size; 288b0a32e0cSBarry Smith ierr = PetscMalloc((N+1)*sizeof(int),&owner);CHKERRQ(ierr); /* see note*/ 2898965ea79SLois Curfman McInnes for (i=0; i<N; i++) { 2908965ea79SLois Curfman McInnes idx = rows[i]; 29135d8aa7fSBarry Smith found = PETSC_FALSE; 2928965ea79SLois Curfman McInnes for (j=0; j<size; j++) { 2938965ea79SLois Curfman McInnes if (idx >= owners[j] && idx < owners[j+1]) { 29435d8aa7fSBarry Smith nprocs[j]++; procs[j] = 1; owner[i] = j; found = PETSC_TRUE; break; 2958965ea79SLois Curfman McInnes } 2968965ea79SLois Curfman McInnes } 29729bbc08cSBarry Smith if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range"); 2988965ea79SLois Curfman McInnes } 2998965ea79SLois Curfman McInnes nsends = 0; for (i=0; i<size; i++) { nsends += procs[i];} 3008965ea79SLois Curfman McInnes 3018965ea79SLois Curfman McInnes /* inform other processors of number of messages and max length*/ 302b0a32e0cSBarry Smith ierr = PetscMalloc(2*size*sizeof(int),&work);CHKERRQ(ierr); 3036831982aSBarry Smith ierr = MPI_Allreduce(nprocs,work,2*size,MPI_INT,PetscMaxSum_Op,comm);CHKERRQ(ierr); 3048965ea79SLois Curfman McInnes nmax = work[rank]; 3056831982aSBarry Smith nrecvs = work[size+rank]; 306606d414cSSatish Balay ierr = PetscFree(work);CHKERRQ(ierr); 3078965ea79SLois Curfman McInnes 3088965ea79SLois Curfman McInnes /* post receives: */ 309b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(int),&rvalues);CHKERRQ(ierr); 310b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 3118965ea79SLois Curfman McInnes for (i=0; i<nrecvs; i++) { 312ca161407SBarry Smith ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 3138965ea79SLois Curfman McInnes } 3148965ea79SLois Curfman McInnes 3158965ea79SLois Curfman McInnes /* do sends: 3168965ea79SLois Curfman McInnes 1) starts[i] gives the starting index in svalues for stuff going to 3178965ea79SLois Curfman McInnes the ith processor 3188965ea79SLois Curfman McInnes */ 319b0a32e0cSBarry Smith ierr = PetscMalloc((N+1)*sizeof(int),&svalues);CHKERRQ(ierr); 320b0a32e0cSBarry Smith ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 321b0a32e0cSBarry Smith ierr = PetscMalloc((size+1)*sizeof(int),&starts);CHKERRQ(ierr); 3228965ea79SLois Curfman McInnes starts[0] = 0; 3238965ea79SLois Curfman McInnes for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[i-1];} 3248965ea79SLois Curfman McInnes for (i=0; i<N; i++) { 3258965ea79SLois Curfman McInnes svalues[starts[owner[i]]++] = rows[i]; 3268965ea79SLois Curfman McInnes } 3278965ea79SLois Curfman McInnes ISRestoreIndices(is,&rows); 3288965ea79SLois Curfman McInnes 3298965ea79SLois Curfman McInnes starts[0] = 0; 3308965ea79SLois Curfman McInnes for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[i-1];} 3318965ea79SLois Curfman McInnes count = 0; 3328965ea79SLois Curfman McInnes for (i=0; i<size; i++) { 3338965ea79SLois Curfman McInnes if (procs[i]) { 334ca161407SBarry Smith ierr = MPI_Isend(svalues+starts[i],nprocs[i],MPI_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 3358965ea79SLois Curfman McInnes } 3368965ea79SLois Curfman McInnes } 337606d414cSSatish Balay ierr = PetscFree(starts);CHKERRQ(ierr); 3388965ea79SLois Curfman McInnes 3398965ea79SLois Curfman McInnes base = owners[rank]; 3408965ea79SLois Curfman McInnes 3418965ea79SLois Curfman McInnes /* wait on receives */ 342b0a32e0cSBarry Smith ierr = PetscMalloc(2*(nrecvs+1)*sizeof(int),&lens);CHKERRQ(ierr); 3438965ea79SLois Curfman McInnes source = lens + nrecvs; 3448965ea79SLois Curfman McInnes count = nrecvs; slen = 0; 3458965ea79SLois Curfman McInnes while (count) { 346ca161407SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 3478965ea79SLois Curfman McInnes /* unpack receives into our local space */ 348ca161407SBarry Smith ierr = MPI_Get_count(&recv_status,MPI_INT,&n);CHKERRQ(ierr); 3498965ea79SLois Curfman McInnes source[imdex] = recv_status.MPI_SOURCE; 3508965ea79SLois Curfman McInnes lens[imdex] = n; 3518965ea79SLois Curfman McInnes slen += n; 3528965ea79SLois Curfman McInnes count--; 3538965ea79SLois Curfman McInnes } 354606d414cSSatish Balay ierr = PetscFree(recv_waits);CHKERRQ(ierr); 3558965ea79SLois Curfman McInnes 3568965ea79SLois Curfman McInnes /* move the data into the send scatter */ 357b0a32e0cSBarry Smith ierr = PetscMalloc((slen+1)*sizeof(int),&lrows);CHKERRQ(ierr); 3588965ea79SLois Curfman McInnes count = 0; 3598965ea79SLois Curfman McInnes for (i=0; i<nrecvs; i++) { 3608965ea79SLois Curfman McInnes values = rvalues + i*nmax; 3618965ea79SLois Curfman McInnes for (j=0; j<lens[i]; j++) { 3628965ea79SLois Curfman McInnes lrows[count++] = values[j] - base; 3638965ea79SLois Curfman McInnes } 3648965ea79SLois Curfman McInnes } 365606d414cSSatish Balay ierr = PetscFree(rvalues);CHKERRQ(ierr); 366606d414cSSatish Balay ierr = PetscFree(lens);CHKERRQ(ierr); 367606d414cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 368606d414cSSatish Balay ierr = PetscFree(nprocs);CHKERRQ(ierr); 3698965ea79SLois Curfman McInnes 3708965ea79SLois Curfman McInnes /* actually zap the local rows */ 371029af93fSBarry Smith ierr = ISCreateGeneral(PETSC_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr); 372b0a32e0cSBarry Smith PetscLogObjectParent(A,istmp); 373606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 3748965ea79SLois Curfman McInnes ierr = MatZeroRows(l->A,istmp,diag);CHKERRQ(ierr); 3758965ea79SLois Curfman McInnes ierr = ISDestroy(istmp);CHKERRQ(ierr); 3768965ea79SLois Curfman McInnes 3778965ea79SLois Curfman McInnes /* wait on sends */ 3788965ea79SLois Curfman McInnes if (nsends) { 379b0a32e0cSBarry Smith ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 380ca161407SBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 381606d414cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 3828965ea79SLois Curfman McInnes } 383606d414cSSatish Balay ierr = PetscFree(send_waits);CHKERRQ(ierr); 384606d414cSSatish Balay ierr = PetscFree(svalues);CHKERRQ(ierr); 3858965ea79SLois Curfman McInnes 3863a40ed3dSBarry Smith PetscFunctionReturn(0); 3878965ea79SLois Curfman McInnes } 3888965ea79SLois Curfman McInnes 389*4a2ae208SSatish Balay #undef __FUNCT__ 390*4a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIDense" 3918f6be9afSLois Curfman McInnes int MatMult_MPIDense(Mat mat,Vec xx,Vec yy) 3928965ea79SLois Curfman McInnes { 39339ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 3948965ea79SLois Curfman McInnes int ierr; 395c456f294SBarry Smith 3963a40ed3dSBarry Smith PetscFunctionBegin; 39743a90d84SBarry Smith ierr = VecScatterBegin(xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD,mdn->Mvctx);CHKERRQ(ierr); 39843a90d84SBarry Smith ierr = VecScatterEnd(xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD,mdn->Mvctx);CHKERRQ(ierr); 39944cd7ae7SLois Curfman McInnes ierr = MatMult_SeqDense(mdn->A,mdn->lvec,yy);CHKERRQ(ierr); 4003a40ed3dSBarry Smith PetscFunctionReturn(0); 4018965ea79SLois Curfman McInnes } 4028965ea79SLois Curfman McInnes 403*4a2ae208SSatish Balay #undef __FUNCT__ 404*4a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIDense" 4058f6be9afSLois Curfman McInnes int MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz) 4068965ea79SLois Curfman McInnes { 40739ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 4088965ea79SLois Curfman McInnes int ierr; 409c456f294SBarry Smith 4103a40ed3dSBarry Smith PetscFunctionBegin; 41143a90d84SBarry Smith ierr = VecScatterBegin(xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD,mdn->Mvctx);CHKERRQ(ierr); 41243a90d84SBarry Smith ierr = VecScatterEnd(xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD,mdn->Mvctx);CHKERRQ(ierr); 41344cd7ae7SLois Curfman McInnes ierr = MatMultAdd_SeqDense(mdn->A,mdn->lvec,yy,zz);CHKERRQ(ierr); 4143a40ed3dSBarry Smith PetscFunctionReturn(0); 4158965ea79SLois Curfman McInnes } 4168965ea79SLois Curfman McInnes 417*4a2ae208SSatish Balay #undef __FUNCT__ 418*4a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIDense" 4197c922b88SBarry Smith int MatMultTranspose_MPIDense(Mat A,Vec xx,Vec yy) 420096963f5SLois Curfman McInnes { 421096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 422096963f5SLois Curfman McInnes int ierr; 4233501a2bdSLois Curfman McInnes Scalar zero = 0.0; 424096963f5SLois Curfman McInnes 4253a40ed3dSBarry Smith PetscFunctionBegin; 4263501a2bdSLois Curfman McInnes ierr = VecSet(&zero,yy);CHKERRQ(ierr); 4277c922b88SBarry Smith ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr); 428537820f0SBarry Smith ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 429537820f0SBarry Smith ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 4303a40ed3dSBarry Smith PetscFunctionReturn(0); 431096963f5SLois Curfman McInnes } 432096963f5SLois Curfman McInnes 433*4a2ae208SSatish Balay #undef __FUNCT__ 434*4a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIDense" 4357c922b88SBarry Smith int MatMultTransposeAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz) 436096963f5SLois Curfman McInnes { 437096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 438096963f5SLois Curfman McInnes int ierr; 439096963f5SLois Curfman McInnes 4403a40ed3dSBarry Smith PetscFunctionBegin; 4413501a2bdSLois Curfman McInnes ierr = VecCopy(yy,zz);CHKERRQ(ierr); 4427c922b88SBarry Smith ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr); 443537820f0SBarry Smith ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 444537820f0SBarry Smith ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 4453a40ed3dSBarry Smith PetscFunctionReturn(0); 446096963f5SLois Curfman McInnes } 447096963f5SLois Curfman McInnes 448*4a2ae208SSatish Balay #undef __FUNCT__ 449*4a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIDense" 4508f6be9afSLois Curfman McInnes int MatGetDiagonal_MPIDense(Mat A,Vec v) 4518965ea79SLois Curfman McInnes { 45239ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 453096963f5SLois Curfman McInnes Mat_SeqDense *aloc = (Mat_SeqDense*)a->A->data; 454273d9f13SBarry Smith int ierr,len,i,n,m = A->m,radd; 45544cd7ae7SLois Curfman McInnes Scalar *x,zero = 0.0; 456ed3cc1f0SBarry Smith 4573a40ed3dSBarry Smith PetscFunctionBegin; 458273d9f13SBarry Smith ierr = VecSet(&zero,v);CHKERRQ(ierr); 459096963f5SLois Curfman McInnes ierr = VecGetArray(v,&x);CHKERRQ(ierr); 460096963f5SLois Curfman McInnes ierr = VecGetSize(v,&n);CHKERRQ(ierr); 461273d9f13SBarry Smith if (n != A->M) SETERRQ(PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec"); 462273d9f13SBarry Smith len = PetscMin(a->A->m,a->A->n); 4637ddc982cSLois Curfman McInnes radd = a->rstart*m; 46444cd7ae7SLois Curfman McInnes for (i=0; i<len; i++) { 465096963f5SLois Curfman McInnes x[i] = aloc->v[radd + i*m + i]; 466096963f5SLois Curfman McInnes } 4679a8c540fSSatish Balay ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 4683a40ed3dSBarry Smith PetscFunctionReturn(0); 4698965ea79SLois Curfman McInnes } 4708965ea79SLois Curfman McInnes 471*4a2ae208SSatish Balay #undef __FUNCT__ 472*4a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIDense" 473e1311b90SBarry Smith int MatDestroy_MPIDense(Mat mat) 4748965ea79SLois Curfman McInnes { 4753501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 4768965ea79SLois Curfman McInnes int ierr; 477ed3cc1f0SBarry Smith 4783a40ed3dSBarry Smith PetscFunctionBegin; 47994d884c6SBarry Smith 480aa482453SBarry Smith #if defined(PETSC_USE_LOG) 481b0a32e0cSBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%d, Cols=%d",mat->M,mat->N); 4828965ea79SLois Curfman McInnes #endif 4838798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 484606d414cSSatish Balay ierr = PetscFree(mdn->rowners);CHKERRQ(ierr); 4853501a2bdSLois Curfman McInnes ierr = MatDestroy(mdn->A);CHKERRQ(ierr); 4863501a2bdSLois Curfman McInnes if (mdn->lvec) VecDestroy(mdn->lvec); 4873501a2bdSLois Curfman McInnes if (mdn->Mvctx) VecScatterDestroy(mdn->Mvctx); 488622d7880SLois Curfman McInnes if (mdn->factor) { 489606d414cSSatish Balay if (mdn->factor->temp) {ierr = PetscFree(mdn->factor->temp);CHKERRQ(ierr);} 490606d414cSSatish Balay if (mdn->factor->tag) {ierr = PetscFree(mdn->factor->tag);CHKERRQ(ierr);} 491606d414cSSatish Balay if (mdn->factor->pivots) {ierr = PetscFree(mdn->factor->pivots);CHKERRQ(ierr);} 492606d414cSSatish Balay ierr = PetscFree(mdn->factor);CHKERRQ(ierr); 493622d7880SLois Curfman McInnes } 494606d414cSSatish Balay ierr = PetscFree(mdn);CHKERRQ(ierr); 4953a40ed3dSBarry Smith PetscFunctionReturn(0); 4968965ea79SLois Curfman McInnes } 49739ddd567SLois Curfman McInnes 498*4a2ae208SSatish Balay #undef __FUNCT__ 499*4a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense_Binary" 500b0a32e0cSBarry Smith static int MatView_MPIDense_Binary(Mat mat,PetscViewer viewer) 5018965ea79SLois Curfman McInnes { 50239ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 5038965ea79SLois Curfman McInnes int ierr; 5047056b6fcSBarry Smith 5053a40ed3dSBarry Smith PetscFunctionBegin; 50639ddd567SLois Curfman McInnes if (mdn->size == 1) { 50739ddd567SLois Curfman McInnes ierr = MatView(mdn->A,viewer);CHKERRQ(ierr); 5088965ea79SLois Curfman McInnes } 50929bbc08cSBarry Smith else SETERRQ(PETSC_ERR_SUP,"Only uniprocessor output supported"); 5103a40ed3dSBarry Smith PetscFunctionReturn(0); 5118965ea79SLois Curfman McInnes } 5128965ea79SLois Curfman McInnes 513*4a2ae208SSatish Balay #undef __FUNCT__ 514*4a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense_ASCIIorDraworSocket" 515b0a32e0cSBarry Smith static int MatView_MPIDense_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 5168965ea79SLois Curfman McInnes { 51739ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 518fb9695e5SSatish Balay int ierr,size = mdn->size,rank = mdn->rank; 519b0a32e0cSBarry Smith PetscViewerType vtype; 520f1af5d2fSBarry Smith PetscTruth isascii,isdraw; 521b0a32e0cSBarry Smith PetscViewer sviewer; 522f3ef73ceSBarry Smith PetscViewerFormat format; 5238965ea79SLois Curfman McInnes 5243a40ed3dSBarry Smith PetscFunctionBegin; 525b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr); 526fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 527f1af5d2fSBarry Smith if (isascii) { 528b0a32e0cSBarry Smith ierr = PetscViewerGetType(viewer,&vtype);CHKERRQ(ierr); 529b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 530fb9695e5SSatish Balay if (format == PETSC_VIEWER_ASCII_INFO_LONG) { 5314e220ebcSLois Curfman McInnes MatInfo info; 532888f2ed8SSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 533b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer," [%d] local rows %d nz %d nz alloced %d mem %d \n",rank,mat->m, 5346831982aSBarry Smith (int)info.nz_used,(int)info.nz_allocated,(int)info.memory);CHKERRQ(ierr); 535b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 5363501a2bdSLois Curfman McInnes ierr = VecScatterView(mdn->Mvctx,viewer);CHKERRQ(ierr); 5373a40ed3dSBarry Smith PetscFunctionReturn(0); 538fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 5393a40ed3dSBarry Smith PetscFunctionReturn(0); 5408965ea79SLois Curfman McInnes } 541f1af5d2fSBarry Smith } else if (isdraw) { 542b0a32e0cSBarry Smith PetscDraw draw; 543f1af5d2fSBarry Smith PetscTruth isnull; 544f1af5d2fSBarry Smith 545b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 546b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 547f1af5d2fSBarry Smith if (isnull) PetscFunctionReturn(0); 548f1af5d2fSBarry Smith } 54977ed5343SBarry Smith 5508965ea79SLois Curfman McInnes if (size == 1) { 55139ddd567SLois Curfman McInnes ierr = MatView(mdn->A,viewer);CHKERRQ(ierr); 5523a40ed3dSBarry Smith } else { 5538965ea79SLois Curfman McInnes /* assemble the entire matrix onto first processor. */ 5548965ea79SLois Curfman McInnes Mat A; 555273d9f13SBarry Smith int M = mat->M,N = mat->N,m,row,i,nz,*cols; 55639ddd567SLois Curfman McInnes Scalar *vals; 5578965ea79SLois Curfman McInnes 5588965ea79SLois Curfman McInnes if (!rank) { 559f1af5d2fSBarry Smith ierr = MatCreateMPIDense(mat->comm,M,N,M,N,PETSC_NULL,&A);CHKERRQ(ierr); 5603a40ed3dSBarry Smith } else { 561f1af5d2fSBarry Smith ierr = MatCreateMPIDense(mat->comm,0,0,M,N,PETSC_NULL,&A);CHKERRQ(ierr); 5628965ea79SLois Curfman McInnes } 563b0a32e0cSBarry Smith PetscLogObjectParent(mat,A); 5648965ea79SLois Curfman McInnes 56539ddd567SLois Curfman McInnes /* Copy the matrix ... This isn't the most efficient means, 56639ddd567SLois Curfman McInnes but it's quick for now */ 567273d9f13SBarry Smith row = mdn->rstart; m = mdn->A->m; 5688965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 56939ddd567SLois Curfman McInnes ierr = MatGetRow(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 57039ddd567SLois Curfman McInnes ierr = MatSetValues(A,1,&row,nz,cols,vals,INSERT_VALUES);CHKERRQ(ierr); 57139ddd567SLois Curfman McInnes ierr = MatRestoreRow(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 57239ddd567SLois Curfman McInnes row++; 5738965ea79SLois Curfman McInnes } 5748965ea79SLois Curfman McInnes 5756d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 5766d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 577b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 578b9b97703SBarry Smith if (!rank) { 5796831982aSBarry Smith ierr = MatView(((Mat_MPIDense*)(A->data))->A,sviewer);CHKERRQ(ierr); 5808965ea79SLois Curfman McInnes } 581b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 582b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 5838965ea79SLois Curfman McInnes ierr = MatDestroy(A);CHKERRQ(ierr); 5848965ea79SLois Curfman McInnes } 5853a40ed3dSBarry Smith PetscFunctionReturn(0); 5868965ea79SLois Curfman McInnes } 5878965ea79SLois Curfman McInnes 588*4a2ae208SSatish Balay #undef __FUNCT__ 589*4a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense" 590b0a32e0cSBarry Smith int MatView_MPIDense(Mat mat,PetscViewer viewer) 5918965ea79SLois Curfman McInnes { 59239ddd567SLois Curfman McInnes int ierr; 593f1af5d2fSBarry Smith PetscTruth isascii,isbinary,isdraw,issocket; 5948965ea79SLois Curfman McInnes 595433994e6SBarry Smith PetscFunctionBegin; 5960f5bd95cSBarry Smith 597b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr); 598fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 599b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 600fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 6010f5bd95cSBarry Smith 602f1af5d2fSBarry Smith if (isascii || issocket || isdraw) { 603f1af5d2fSBarry Smith ierr = MatView_MPIDense_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 6040f5bd95cSBarry Smith } else if (isbinary) { 6053a40ed3dSBarry Smith ierr = MatView_MPIDense_Binary(mat,viewer);CHKERRQ(ierr); 6065cd90555SBarry Smith } else { 60729bbc08cSBarry Smith SETERRQ1(1,"Viewer type %s not supported by MPI dense matrix",((PetscObject)viewer)->type_name); 6088965ea79SLois Curfman McInnes } 6093a40ed3dSBarry Smith PetscFunctionReturn(0); 6108965ea79SLois Curfman McInnes } 6118965ea79SLois Curfman McInnes 612*4a2ae208SSatish Balay #undef __FUNCT__ 613*4a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIDense" 6148f6be9afSLois Curfman McInnes int MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info) 6158965ea79SLois Curfman McInnes { 6163501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 6173501a2bdSLois Curfman McInnes Mat mdn = mat->A; 6184e220ebcSLois Curfman McInnes int ierr; 619329f5518SBarry Smith PetscReal isend[5],irecv[5]; 6208965ea79SLois Curfman McInnes 6213a40ed3dSBarry Smith PetscFunctionBegin; 622273d9f13SBarry Smith info->rows_global = (double)A->M; 623273d9f13SBarry Smith info->columns_global = (double)A->N; 624273d9f13SBarry Smith info->rows_local = (double)A->m; 625273d9f13SBarry Smith info->columns_local = (double)A->N; 6264e220ebcSLois Curfman McInnes info->block_size = 1.0; 6274e220ebcSLois Curfman McInnes ierr = MatGetInfo(mdn,MAT_LOCAL,info);CHKERRQ(ierr); 6284e220ebcSLois Curfman McInnes isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 6294e220ebcSLois Curfman McInnes isend[3] = info->memory; isend[4] = info->mallocs; 6308965ea79SLois Curfman McInnes if (flag == MAT_LOCAL) { 6314e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 6324e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 6334e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 6344e220ebcSLois Curfman McInnes info->memory = isend[3]; 6354e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 6368965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 637f7cdd7c9SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPI_DOUBLE,MPI_MAX,A->comm);CHKERRQ(ierr); 6384e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 6394e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 6404e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 6414e220ebcSLois Curfman McInnes info->memory = irecv[3]; 6424e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 6438965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 644f7cdd7c9SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPI_DOUBLE,MPI_SUM,A->comm);CHKERRQ(ierr); 6454e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 6464e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 6474e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 6484e220ebcSLois Curfman McInnes info->memory = irecv[3]; 6494e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 6508965ea79SLois Curfman McInnes } 6514e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 6524e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 6534e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 6543a40ed3dSBarry Smith PetscFunctionReturn(0); 6558965ea79SLois Curfman McInnes } 6568965ea79SLois Curfman McInnes 657*4a2ae208SSatish Balay #undef __FUNCT__ 658*4a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIDense" 6598f6be9afSLois Curfman McInnes int MatSetOption_MPIDense(Mat A,MatOption op) 6608965ea79SLois Curfman McInnes { 66139ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 662273d9f13SBarry Smith int ierr; 6638965ea79SLois Curfman McInnes 6643a40ed3dSBarry Smith PetscFunctionBegin; 6656d4a8577SBarry Smith if (op == MAT_NO_NEW_NONZERO_LOCATIONS || 6666d4a8577SBarry Smith op == MAT_YES_NEW_NONZERO_LOCATIONS || 6674787f768SSatish Balay op == MAT_NEW_NONZERO_LOCATION_ERR || 6684787f768SSatish Balay op == MAT_NEW_NONZERO_ALLOCATION_ERR || 669219d9a1aSLois Curfman McInnes op == MAT_COLUMNS_SORTED || 670219d9a1aSLois Curfman McInnes op == MAT_COLUMNS_UNSORTED) { 671273d9f13SBarry Smith ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 672b1fbbac0SLois Curfman McInnes } else if (op == MAT_ROW_ORIENTED) { 673273d9f13SBarry Smith a->roworiented = PETSC_TRUE; 674273d9f13SBarry Smith ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 675b1fbbac0SLois Curfman McInnes } else if (op == MAT_ROWS_SORTED || 676219d9a1aSLois Curfman McInnes op == MAT_ROWS_UNSORTED || 677b51ba29fSSatish Balay op == MAT_YES_NEW_DIAGONALS || 678b51ba29fSSatish Balay op == MAT_USE_HASH_TABLE) { 679b0a32e0cSBarry Smith PetscLogInfo(A,"MatSetOption_MPIDense:Option ignored\n"); 6803a40ed3dSBarry Smith } else if (op == MAT_COLUMN_ORIENTED) { 681273d9f13SBarry Smith a->roworiented = PETSC_FALSE; 682273d9f13SBarry Smith ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 6833782ba37SSatish Balay } else if (op == MAT_IGNORE_OFF_PROC_ENTRIES) { 684273d9f13SBarry Smith a->donotstash = PETSC_TRUE; 6853a40ed3dSBarry Smith } else if (op == MAT_NO_NEW_DIAGONALS) { 68629bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS"); 6873a40ed3dSBarry Smith } else { 68829bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"unknown option"); 6893a40ed3dSBarry Smith } 6903a40ed3dSBarry Smith PetscFunctionReturn(0); 6918965ea79SLois Curfman McInnes } 6928965ea79SLois Curfman McInnes 693*4a2ae208SSatish Balay #undef __FUNCT__ 694*4a2ae208SSatish Balay #define __FUNCT__ "MatGetOwnershipRange_MPIDense" 6958f6be9afSLois Curfman McInnes int MatGetOwnershipRange_MPIDense(Mat A,int *m,int *n) 6968965ea79SLois Curfman McInnes { 6973501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 6983a40ed3dSBarry Smith 6993a40ed3dSBarry Smith PetscFunctionBegin; 7004c49b128SBarry Smith if (m) *m = mat->rstart; 7014c49b128SBarry Smith if (n) *n = mat->rend; 7023a40ed3dSBarry Smith PetscFunctionReturn(0); 7038965ea79SLois Curfman McInnes } 7048965ea79SLois Curfman McInnes 705*4a2ae208SSatish Balay #undef __FUNCT__ 706*4a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPIDense" 7078f6be9afSLois Curfman McInnes int MatGetRow_MPIDense(Mat A,int row,int *nz,int **idx,Scalar **v) 7088965ea79SLois Curfman McInnes { 7093501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 7103a40ed3dSBarry Smith int lrow,rstart = mat->rstart,rend = mat->rend,ierr; 7118965ea79SLois Curfman McInnes 7123a40ed3dSBarry Smith PetscFunctionBegin; 71329bbc08cSBarry Smith if (row < rstart || row >= rend) SETERRQ(PETSC_ERR_SUP,"only local rows") 7148965ea79SLois Curfman McInnes lrow = row - rstart; 7153a40ed3dSBarry Smith ierr = MatGetRow(mat->A,lrow,nz,idx,v);CHKERRQ(ierr); 7163a40ed3dSBarry Smith PetscFunctionReturn(0); 7178965ea79SLois Curfman McInnes } 7188965ea79SLois Curfman McInnes 719*4a2ae208SSatish Balay #undef __FUNCT__ 720*4a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPIDense" 7218f6be9afSLois Curfman McInnes int MatRestoreRow_MPIDense(Mat mat,int row,int *nz,int **idx,Scalar **v) 7228965ea79SLois Curfman McInnes { 723606d414cSSatish Balay int ierr; 724606d414cSSatish Balay 7253a40ed3dSBarry Smith PetscFunctionBegin; 726606d414cSSatish Balay if (idx) {ierr = PetscFree(*idx);CHKERRQ(ierr);} 727606d414cSSatish Balay if (v) {ierr = PetscFree(*v);CHKERRQ(ierr);} 7283a40ed3dSBarry Smith PetscFunctionReturn(0); 7298965ea79SLois Curfman McInnes } 7308965ea79SLois Curfman McInnes 731*4a2ae208SSatish Balay #undef __FUNCT__ 732*4a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIDense" 7335b2fa520SLois Curfman McInnes int MatDiagonalScale_MPIDense(Mat A,Vec ll,Vec rr) 7345b2fa520SLois Curfman McInnes { 7355b2fa520SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 7365b2fa520SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)mdn->A->data; 7375b2fa520SLois Curfman McInnes Scalar *l,*r,x,*v; 738273d9f13SBarry Smith int ierr,i,j,s2a,s3a,s2,s3,m=mdn->A->m,n=mdn->A->n; 7395b2fa520SLois Curfman McInnes 7405b2fa520SLois Curfman McInnes PetscFunctionBegin; 74172d926a5SLois Curfman McInnes ierr = MatGetLocalSize(A,&s2,&s3);CHKERRQ(ierr); 7425b2fa520SLois Curfman McInnes if (ll) { 74372d926a5SLois Curfman McInnes ierr = VecGetLocalSize(ll,&s2a);CHKERRQ(ierr); 74429bbc08cSBarry Smith if (s2a != s2) SETERRQ(PETSC_ERR_ARG_SIZ,"Left scaling vector non-conforming local size"); 7455b2fa520SLois Curfman McInnes ierr = VecGetArray(ll,&l);CHKERRQ(ierr); 7465b2fa520SLois Curfman McInnes for (i=0; i<m; i++) { 7475b2fa520SLois Curfman McInnes x = l[i]; 7485b2fa520SLois Curfman McInnes v = mat->v + i; 7495b2fa520SLois Curfman McInnes for (j=0; j<n; j++) { (*v) *= x; v+= m;} 7505b2fa520SLois Curfman McInnes } 7515b2fa520SLois Curfman McInnes ierr = VecRestoreArray(ll,&l);CHKERRQ(ierr); 752b0a32e0cSBarry Smith PetscLogFlops(n*m); 7535b2fa520SLois Curfman McInnes } 7545b2fa520SLois Curfman McInnes if (rr) { 75572d926a5SLois Curfman McInnes ierr = VecGetSize(rr,&s3a);CHKERRQ(ierr); 75629bbc08cSBarry Smith if (s3a != s3) SETERRQ(PETSC_ERR_ARG_SIZ,"Right scaling vec non-conforming local size"); 7575b2fa520SLois Curfman McInnes ierr = VecScatterBegin(rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD,mdn->Mvctx);CHKERRQ(ierr); 7585b2fa520SLois Curfman McInnes ierr = VecScatterEnd(rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD,mdn->Mvctx);CHKERRQ(ierr); 7595b2fa520SLois Curfman McInnes ierr = VecGetArray(mdn->lvec,&r);CHKERRQ(ierr); 7605b2fa520SLois Curfman McInnes for (i=0; i<n; i++) { 7615b2fa520SLois Curfman McInnes x = r[i]; 7625b2fa520SLois Curfman McInnes v = mat->v + i*m; 7635b2fa520SLois Curfman McInnes for (j=0; j<m; j++) { (*v++) *= x;} 7645b2fa520SLois Curfman McInnes } 76572d926a5SLois Curfman McInnes ierr = VecRestoreArray(mdn->lvec,&r);CHKERRQ(ierr); 766b0a32e0cSBarry Smith PetscLogFlops(n*m); 7675b2fa520SLois Curfman McInnes } 7685b2fa520SLois Curfman McInnes PetscFunctionReturn(0); 7695b2fa520SLois Curfman McInnes } 7705b2fa520SLois Curfman McInnes 771*4a2ae208SSatish Balay #undef __FUNCT__ 772*4a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIDense" 773329f5518SBarry Smith int MatNorm_MPIDense(Mat A,NormType type,PetscReal *norm) 774096963f5SLois Curfman McInnes { 7753501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 7763501a2bdSLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)mdn->A->data; 7773501a2bdSLois Curfman McInnes int ierr,i,j; 778329f5518SBarry Smith PetscReal sum = 0.0; 7793501a2bdSLois Curfman McInnes Scalar *v = mat->v; 7803501a2bdSLois Curfman McInnes 7813a40ed3dSBarry Smith PetscFunctionBegin; 7823501a2bdSLois Curfman McInnes if (mdn->size == 1) { 7833501a2bdSLois Curfman McInnes ierr = MatNorm(mdn->A,type,norm);CHKERRQ(ierr); 7843501a2bdSLois Curfman McInnes } else { 7853501a2bdSLois Curfman McInnes if (type == NORM_FROBENIUS) { 786273d9f13SBarry Smith for (i=0; i<mdn->A->n*mdn->A->m; i++) { 787aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 788329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 7893501a2bdSLois Curfman McInnes #else 7903501a2bdSLois Curfman McInnes sum += (*v)*(*v); v++; 7913501a2bdSLois Curfman McInnes #endif 7923501a2bdSLois Curfman McInnes } 793ca161407SBarry Smith ierr = MPI_Allreduce(&sum,norm,1,MPI_DOUBLE,MPI_SUM,A->comm);CHKERRQ(ierr); 7943501a2bdSLois Curfman McInnes *norm = sqrt(*norm); 795b0a32e0cSBarry Smith PetscLogFlops(2*mdn->A->n*mdn->A->m); 7963a40ed3dSBarry Smith } else if (type == NORM_1) { 797329f5518SBarry Smith PetscReal *tmp,*tmp2; 798b0a32e0cSBarry Smith ierr = PetscMalloc(2*A->N*sizeof(PetscReal),&tmp);CHKERRQ(ierr); 799273d9f13SBarry Smith tmp2 = tmp + A->N; 800273d9f13SBarry Smith ierr = PetscMemzero(tmp,2*A->N*sizeof(PetscReal));CHKERRQ(ierr); 801096963f5SLois Curfman McInnes *norm = 0.0; 8023501a2bdSLois Curfman McInnes v = mat->v; 803273d9f13SBarry Smith for (j=0; j<mdn->A->n; j++) { 804273d9f13SBarry Smith for (i=0; i<mdn->A->m; i++) { 80567e560aaSBarry Smith tmp[j] += PetscAbsScalar(*v); v++; 8063501a2bdSLois Curfman McInnes } 8073501a2bdSLois Curfman McInnes } 808273d9f13SBarry Smith ierr = MPI_Allreduce(tmp,tmp2,A->N,MPI_DOUBLE,MPI_SUM,A->comm);CHKERRQ(ierr); 809273d9f13SBarry Smith for (j=0; j<A->N; j++) { 8103501a2bdSLois Curfman McInnes if (tmp2[j] > *norm) *norm = tmp2[j]; 8113501a2bdSLois Curfman McInnes } 812606d414cSSatish Balay ierr = PetscFree(tmp);CHKERRQ(ierr); 813b0a32e0cSBarry Smith PetscLogFlops(A->n*A->m); 8143a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 815329f5518SBarry Smith PetscReal ntemp; 8163501a2bdSLois Curfman McInnes ierr = MatNorm(mdn->A,type,&ntemp);CHKERRQ(ierr); 817ca161407SBarry Smith ierr = MPI_Allreduce(&ntemp,norm,1,MPI_DOUBLE,MPI_MAX,A->comm);CHKERRQ(ierr); 8183a40ed3dSBarry Smith } else { 81929bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for two norm"); 8203501a2bdSLois Curfman McInnes } 8213501a2bdSLois Curfman McInnes } 8223a40ed3dSBarry Smith PetscFunctionReturn(0); 8233501a2bdSLois Curfman McInnes } 8243501a2bdSLois Curfman McInnes 825*4a2ae208SSatish Balay #undef __FUNCT__ 826*4a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPIDense" 8278f6be9afSLois Curfman McInnes int MatTranspose_MPIDense(Mat A,Mat *matout) 8283501a2bdSLois Curfman McInnes { 8293501a2bdSLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 8303501a2bdSLois Curfman McInnes Mat_SeqDense *Aloc = (Mat_SeqDense*)a->A->data; 8313501a2bdSLois Curfman McInnes Mat B; 832273d9f13SBarry Smith int M = A->M,N = A->N,m,n,*rwork,rstart = a->rstart; 8333501a2bdSLois Curfman McInnes int j,i,ierr; 8343501a2bdSLois Curfman McInnes Scalar *v; 8353501a2bdSLois Curfman McInnes 8363a40ed3dSBarry Smith PetscFunctionBegin; 8377c922b88SBarry Smith if (!matout && M != N) { 83829bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Supports square matrix only in-place"); 8397056b6fcSBarry Smith } 8407056b6fcSBarry Smith ierr = MatCreateMPIDense(A->comm,PETSC_DECIDE,PETSC_DECIDE,N,M,PETSC_NULL,&B);CHKERRQ(ierr); 8413501a2bdSLois Curfman McInnes 842273d9f13SBarry Smith m = a->A->m; n = a->A->n; v = Aloc->v; 843b0a32e0cSBarry Smith ierr = PetscMalloc(n*sizeof(int),&rwork);CHKERRQ(ierr); 8443501a2bdSLois Curfman McInnes for (j=0; j<n; j++) { 8453501a2bdSLois Curfman McInnes for (i=0; i<m; i++) rwork[i] = rstart + i; 8463501a2bdSLois Curfman McInnes ierr = MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES);CHKERRQ(ierr); 8473501a2bdSLois Curfman McInnes v += m; 8483501a2bdSLois Curfman McInnes } 849606d414cSSatish Balay ierr = PetscFree(rwork);CHKERRQ(ierr); 8506d4a8577SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 8516d4a8577SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 8527c922b88SBarry Smith if (matout) { 8533501a2bdSLois Curfman McInnes *matout = B; 8543501a2bdSLois Curfman McInnes } else { 855273d9f13SBarry Smith ierr = MatHeaderCopy(A,B);CHKERRQ(ierr); 8563501a2bdSLois Curfman McInnes } 8573a40ed3dSBarry Smith PetscFunctionReturn(0); 858096963f5SLois Curfman McInnes } 859096963f5SLois Curfman McInnes 860d9eff348SSatish Balay #include "petscblaslapack.h" 861*4a2ae208SSatish Balay #undef __FUNCT__ 862*4a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIDense" 8638f6be9afSLois Curfman McInnes int MatScale_MPIDense(Scalar *alpha,Mat inA) 86444cd7ae7SLois Curfman McInnes { 86544cd7ae7SLois Curfman McInnes Mat_MPIDense *A = (Mat_MPIDense*)inA->data; 86644cd7ae7SLois Curfman McInnes Mat_SeqDense *a = (Mat_SeqDense*)A->A->data; 86744cd7ae7SLois Curfman McInnes int one = 1,nz; 86844cd7ae7SLois Curfman McInnes 8693a40ed3dSBarry Smith PetscFunctionBegin; 870273d9f13SBarry Smith nz = inA->m*inA->N; 87144cd7ae7SLois Curfman McInnes BLscal_(&nz,alpha,a->v,&one); 872b0a32e0cSBarry Smith PetscLogFlops(nz); 8733a40ed3dSBarry Smith PetscFunctionReturn(0); 87444cd7ae7SLois Curfman McInnes } 87544cd7ae7SLois Curfman McInnes 8765609ef8eSBarry Smith static int MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat *); 877ca44d042SBarry Smith EXTERN int MatGetSubMatrices_MPIDense(Mat,int,IS *,IS *,MatReuse,Mat **); 8788965ea79SLois Curfman McInnes 879*4a2ae208SSatish Balay #undef __FUNCT__ 880*4a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPIDense" 881273d9f13SBarry Smith int MatSetUpPreallocation_MPIDense(Mat A) 882273d9f13SBarry Smith { 883273d9f13SBarry Smith int ierr; 884273d9f13SBarry Smith 885273d9f13SBarry Smith PetscFunctionBegin; 886273d9f13SBarry Smith ierr = MatMPIDenseSetPreallocation(A,0);CHKERRQ(ierr); 887273d9f13SBarry Smith PetscFunctionReturn(0); 888273d9f13SBarry Smith } 889273d9f13SBarry Smith 8908965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/ 89109dc0095SBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIDense, 89209dc0095SBarry Smith MatGetRow_MPIDense, 89309dc0095SBarry Smith MatRestoreRow_MPIDense, 89409dc0095SBarry Smith MatMult_MPIDense, 89509dc0095SBarry Smith MatMultAdd_MPIDense, 8967c922b88SBarry Smith MatMultTranspose_MPIDense, 8977c922b88SBarry Smith MatMultTransposeAdd_MPIDense, 8988965ea79SLois Curfman McInnes 0, 89909dc0095SBarry Smith 0, 90009dc0095SBarry Smith 0, 90109dc0095SBarry Smith 0, 90209dc0095SBarry Smith 0, 90309dc0095SBarry Smith 0, 90409dc0095SBarry Smith 0, 90509dc0095SBarry Smith MatTranspose_MPIDense, 90609dc0095SBarry Smith MatGetInfo_MPIDense,0, 90709dc0095SBarry Smith MatGetDiagonal_MPIDense, 9085b2fa520SLois Curfman McInnes MatDiagonalScale_MPIDense, 90909dc0095SBarry Smith MatNorm_MPIDense, 91009dc0095SBarry Smith MatAssemblyBegin_MPIDense, 91109dc0095SBarry Smith MatAssemblyEnd_MPIDense, 91209dc0095SBarry Smith 0, 91309dc0095SBarry Smith MatSetOption_MPIDense, 91409dc0095SBarry Smith MatZeroEntries_MPIDense, 91509dc0095SBarry Smith MatZeroRows_MPIDense, 91609dc0095SBarry Smith 0, 91709dc0095SBarry Smith 0, 91809dc0095SBarry Smith 0, 91909dc0095SBarry Smith 0, 920273d9f13SBarry Smith MatSetUpPreallocation_MPIDense, 921273d9f13SBarry Smith 0, 92239ddd567SLois Curfman McInnes MatGetOwnershipRange_MPIDense, 92309dc0095SBarry Smith 0, 92409dc0095SBarry Smith 0, 92509dc0095SBarry Smith MatGetArray_MPIDense, 92609dc0095SBarry Smith MatRestoreArray_MPIDense, 9275609ef8eSBarry Smith MatDuplicate_MPIDense, 92809dc0095SBarry Smith 0, 92909dc0095SBarry Smith 0, 93009dc0095SBarry Smith 0, 93109dc0095SBarry Smith 0, 93209dc0095SBarry Smith 0, 9332ce60cd0SSatish Balay MatGetSubMatrices_MPIDense, 93409dc0095SBarry Smith 0, 93509dc0095SBarry Smith MatGetValues_MPIDense, 93609dc0095SBarry Smith 0, 93709dc0095SBarry Smith 0, 93809dc0095SBarry Smith MatScale_MPIDense, 93909dc0095SBarry Smith 0, 94009dc0095SBarry Smith 0, 94109dc0095SBarry Smith 0, 94209dc0095SBarry Smith MatGetBlockSize_MPIDense, 94309dc0095SBarry Smith 0, 94409dc0095SBarry Smith 0, 94509dc0095SBarry Smith 0, 94609dc0095SBarry Smith 0, 94709dc0095SBarry Smith 0, 94809dc0095SBarry Smith 0, 94909dc0095SBarry Smith 0, 95009dc0095SBarry Smith 0, 95109dc0095SBarry Smith 0, 952ca3fa75bSLois Curfman McInnes MatGetSubMatrix_MPIDense, 953b9b97703SBarry Smith MatDestroy_MPIDense, 954b9b97703SBarry Smith MatView_MPIDense, 95509dc0095SBarry Smith MatGetMaps_Petsc}; 9568965ea79SLois Curfman McInnes 957273d9f13SBarry Smith EXTERN_C_BEGIN 958*4a2ae208SSatish Balay #undef __FUNCT__ 959*4a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIDense" 960273d9f13SBarry Smith int MatCreate_MPIDense(Mat mat) 961273d9f13SBarry Smith { 962273d9f13SBarry Smith Mat_MPIDense *a; 963273d9f13SBarry Smith int ierr,i; 964273d9f13SBarry Smith 965273d9f13SBarry Smith PetscFunctionBegin; 966b0a32e0cSBarry Smith ierr = PetscNew(Mat_MPIDense,&a);CHKERRQ(ierr); 967b0a32e0cSBarry Smith mat->data = (void*)a; 968273d9f13SBarry Smith ierr = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 969273d9f13SBarry Smith mat->factor = 0; 970273d9f13SBarry Smith mat->mapping = 0; 971273d9f13SBarry Smith 972273d9f13SBarry Smith a->factor = 0; 973273d9f13SBarry Smith mat->insertmode = NOT_SET_VALUES; 974273d9f13SBarry Smith ierr = MPI_Comm_rank(mat->comm,&a->rank);CHKERRQ(ierr); 975273d9f13SBarry Smith ierr = MPI_Comm_size(mat->comm,&a->size);CHKERRQ(ierr); 976273d9f13SBarry Smith 977273d9f13SBarry Smith ierr = PetscSplitOwnership(mat->comm,&mat->m,&mat->M);CHKERRQ(ierr); 978273d9f13SBarry Smith ierr = PetscSplitOwnership(mat->comm,&mat->n,&mat->N);CHKERRQ(ierr); 979273d9f13SBarry Smith a->nvec = mat->n; 980273d9f13SBarry Smith 981273d9f13SBarry Smith /* the information in the maps duplicates the information computed below, eventually 982273d9f13SBarry Smith we should remove the duplicate information that is not contained in the maps */ 983273d9f13SBarry Smith ierr = MapCreateMPI(mat->comm,mat->m,mat->M,&mat->rmap);CHKERRQ(ierr); 984273d9f13SBarry Smith ierr = MapCreateMPI(mat->comm,mat->n,mat->N,&mat->cmap);CHKERRQ(ierr); 985273d9f13SBarry Smith 986273d9f13SBarry Smith /* build local table of row and column ownerships */ 987b0a32e0cSBarry Smith ierr = PetscMalloc(2*(a->size+2)*sizeof(int),&a->rowners);CHKERRQ(ierr); 988273d9f13SBarry Smith a->cowners = a->rowners + a->size + 1; 989b0a32e0cSBarry Smith PetscLogObjectMemory(mat,2*(a->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPIDense)); 990273d9f13SBarry Smith ierr = MPI_Allgather(&mat->m,1,MPI_INT,a->rowners+1,1,MPI_INT,mat->comm);CHKERRQ(ierr); 991273d9f13SBarry Smith a->rowners[0] = 0; 992273d9f13SBarry Smith for (i=2; i<=a->size; i++) { 993273d9f13SBarry Smith a->rowners[i] += a->rowners[i-1]; 994273d9f13SBarry Smith } 995273d9f13SBarry Smith a->rstart = a->rowners[a->rank]; 996273d9f13SBarry Smith a->rend = a->rowners[a->rank+1]; 997273d9f13SBarry Smith ierr = MPI_Allgather(&mat->n,1,MPI_INT,a->cowners+1,1,MPI_INT,mat->comm);CHKERRQ(ierr); 998273d9f13SBarry Smith a->cowners[0] = 0; 999273d9f13SBarry Smith for (i=2; i<=a->size; i++) { 1000273d9f13SBarry Smith a->cowners[i] += a->cowners[i-1]; 1001273d9f13SBarry Smith } 1002273d9f13SBarry Smith 1003273d9f13SBarry Smith /* build cache for off array entries formed */ 1004273d9f13SBarry Smith a->donotstash = PETSC_FALSE; 1005273d9f13SBarry Smith ierr = MatStashCreate_Private(mat->comm,1,&mat->stash);CHKERRQ(ierr); 1006273d9f13SBarry Smith 1007273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 1008273d9f13SBarry Smith a->lvec = 0; 1009273d9f13SBarry Smith a->Mvctx = 0; 1010273d9f13SBarry Smith a->roworiented = PETSC_TRUE; 1011273d9f13SBarry Smith 1012273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatGetDiagonalBlock_C", 1013273d9f13SBarry Smith "MatGetDiagonalBlock_MPIDense", 1014273d9f13SBarry Smith MatGetDiagonalBlock_MPIDense);CHKERRQ(ierr); 1015273d9f13SBarry Smith PetscFunctionReturn(0); 1016273d9f13SBarry Smith } 1017273d9f13SBarry Smith EXTERN_C_END 1018273d9f13SBarry Smith 1019*4a2ae208SSatish Balay #undef __FUNCT__ 1020*4a2ae208SSatish Balay #define __FUNCT__ "MatMPIDenseSetPreallocation" 1021273d9f13SBarry Smith /*@C 1022273d9f13SBarry Smith MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries 1023273d9f13SBarry Smith 1024273d9f13SBarry Smith Not collective 1025273d9f13SBarry Smith 1026273d9f13SBarry Smith Input Parameters: 1027273d9f13SBarry Smith . A - the matrix 1028273d9f13SBarry Smith - data - optional location of matrix data. Set data=PETSC_NULL for PETSc 1029273d9f13SBarry Smith to control all matrix memory allocation. 1030273d9f13SBarry Smith 1031273d9f13SBarry Smith Notes: 1032273d9f13SBarry Smith The dense format is fully compatible with standard Fortran 77 1033273d9f13SBarry Smith storage by columns. 1034273d9f13SBarry Smith 1035273d9f13SBarry Smith The data input variable is intended primarily for Fortran programmers 1036273d9f13SBarry Smith who wish to allocate their own matrix memory space. Most users should 1037273d9f13SBarry Smith set data=PETSC_NULL. 1038273d9f13SBarry Smith 1039273d9f13SBarry Smith Level: intermediate 1040273d9f13SBarry Smith 1041273d9f13SBarry Smith .keywords: matrix,dense, parallel 1042273d9f13SBarry Smith 1043273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 1044273d9f13SBarry Smith @*/ 1045273d9f13SBarry Smith int MatMPIDenseSetPreallocation(Mat mat,Scalar *data) 1046273d9f13SBarry Smith { 1047273d9f13SBarry Smith Mat_MPIDense *a; 1048273d9f13SBarry Smith int ierr; 1049273d9f13SBarry Smith PetscTruth flg2; 1050273d9f13SBarry Smith 1051273d9f13SBarry Smith PetscFunctionBegin; 1052273d9f13SBarry Smith ierr = PetscTypeCompare((PetscObject)mat,MATMPIDENSE,&flg2);CHKERRQ(ierr); 1053273d9f13SBarry Smith if (!flg2) PetscFunctionReturn(0); 1054273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 1055273d9f13SBarry Smith /* Note: For now, when data is specified above, this assumes the user correctly 1056273d9f13SBarry Smith allocates the local dense storage space. We should add error checking. */ 1057273d9f13SBarry Smith 1058273d9f13SBarry Smith a = (Mat_MPIDense*)mat->data; 1059273d9f13SBarry Smith ierr = MatCreateSeqDense(PETSC_COMM_SELF,mat->m,mat->N,data,&a->A);CHKERRQ(ierr); 1060b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->A); 1061273d9f13SBarry Smith PetscFunctionReturn(0); 1062273d9f13SBarry Smith } 1063273d9f13SBarry Smith 1064*4a2ae208SSatish Balay #undef __FUNCT__ 1065*4a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPIDense" 10668965ea79SLois Curfman McInnes /*@C 106739ddd567SLois Curfman McInnes MatCreateMPIDense - Creates a sparse parallel matrix in dense format. 10688965ea79SLois Curfman McInnes 1069db81eaa0SLois Curfman McInnes Collective on MPI_Comm 1070db81eaa0SLois Curfman McInnes 10718965ea79SLois Curfman McInnes Input Parameters: 1072db81eaa0SLois Curfman McInnes + comm - MPI communicator 10738965ea79SLois Curfman McInnes . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1074db81eaa0SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 10758965ea79SLois Curfman McInnes . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 1076db81eaa0SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 1077db81eaa0SLois Curfman McInnes - data - optional location of matrix data. Set data=PETSC_NULL for PETSc 1078dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 10798965ea79SLois Curfman McInnes 10808965ea79SLois Curfman McInnes Output Parameter: 1081477f1c0bSLois Curfman McInnes . A - the matrix 10828965ea79SLois Curfman McInnes 1083b259b22eSLois Curfman McInnes Notes: 108439ddd567SLois Curfman McInnes The dense format is fully compatible with standard Fortran 77 108539ddd567SLois Curfman McInnes storage by columns. 10868965ea79SLois Curfman McInnes 108718f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 108818f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 1089b4fd4287SBarry Smith set data=PETSC_NULL. 109018f449edSLois Curfman McInnes 10918965ea79SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 10928965ea79SLois Curfman McInnes (possibly both). 10938965ea79SLois Curfman McInnes 1094027ccd11SLois Curfman McInnes Level: intermediate 1095027ccd11SLois Curfman McInnes 109639ddd567SLois Curfman McInnes .keywords: matrix,dense, parallel 10978965ea79SLois Curfman McInnes 109839ddd567SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 10998965ea79SLois Curfman McInnes @*/ 1100477f1c0bSLois Curfman McInnes int MatCreateMPIDense(MPI_Comm comm,int m,int n,int M,int N,Scalar *data,Mat *A) 11018965ea79SLois Curfman McInnes { 1102273d9f13SBarry Smith int ierr,size; 11038965ea79SLois Curfman McInnes 11043a40ed3dSBarry Smith PetscFunctionBegin; 1105273d9f13SBarry Smith ierr = MatCreate(comm,m,n,M,N,A);CHKERRQ(ierr); 1106273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1107273d9f13SBarry Smith if (size > 1) { 1108273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIDENSE);CHKERRQ(ierr); 1109273d9f13SBarry Smith ierr = MatMPIDenseSetPreallocation(*A,data);CHKERRQ(ierr); 1110273d9f13SBarry Smith } else { 1111273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr); 1112273d9f13SBarry Smith ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr); 11138c469469SLois Curfman McInnes } 11143a40ed3dSBarry Smith PetscFunctionReturn(0); 11158965ea79SLois Curfman McInnes } 11168965ea79SLois Curfman McInnes 1117*4a2ae208SSatish Balay #undef __FUNCT__ 1118*4a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIDense" 11195609ef8eSBarry Smith static int MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat) 11208965ea79SLois Curfman McInnes { 11218965ea79SLois Curfman McInnes Mat mat; 11223501a2bdSLois Curfman McInnes Mat_MPIDense *a,*oldmat = (Mat_MPIDense*)A->data; 112339ddd567SLois Curfman McInnes int ierr; 11248965ea79SLois Curfman McInnes 11253a40ed3dSBarry Smith PetscFunctionBegin; 11268965ea79SLois Curfman McInnes *newmat = 0; 1127273d9f13SBarry Smith ierr = MatCreate(A->comm,A->m,A->n,A->M,A->N,&mat);CHKERRQ(ierr); 1128273d9f13SBarry Smith ierr = MatSetType(mat,MATMPIDENSE);CHKERRQ(ierr); 1129b0a32e0cSBarry Smith ierr = PetscNew(Mat_MPIDense,&a);CHKERRQ(ierr); 1130b0a32e0cSBarry Smith mat->data = (void*)a; 1131549d3d68SSatish Balay ierr = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 11323501a2bdSLois Curfman McInnes mat->factor = A->factor; 1133c456f294SBarry Smith mat->assembled = PETSC_TRUE; 1134273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 11358965ea79SLois Curfman McInnes 11368965ea79SLois Curfman McInnes a->rstart = oldmat->rstart; 11378965ea79SLois Curfman McInnes a->rend = oldmat->rend; 11388965ea79SLois Curfman McInnes a->size = oldmat->size; 11398965ea79SLois Curfman McInnes a->rank = oldmat->rank; 1140e0fa3b82SLois Curfman McInnes mat->insertmode = NOT_SET_VALUES; 1141b9b97703SBarry Smith a->nvec = oldmat->nvec; 11423782ba37SSatish Balay a->donotstash = oldmat->donotstash; 1143b0a32e0cSBarry Smith ierr = PetscMalloc((a->size+1)*sizeof(int),&a->rowners);CHKERRQ(ierr); 1144b0a32e0cSBarry Smith PetscLogObjectMemory(mat,(a->size+1)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPIDense)); 1145549d3d68SSatish Balay ierr = PetscMemcpy(a->rowners,oldmat->rowners,(a->size+1)*sizeof(int));CHKERRQ(ierr); 11468798bf22SSatish Balay ierr = MatStashCreate_Private(A->comm,1,&mat->stash);CHKERRQ(ierr); 11478965ea79SLois Curfman McInnes 1148329f5518SBarry Smith ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 11495609ef8eSBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 1150b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->A); 11518965ea79SLois Curfman McInnes *newmat = mat; 11523a40ed3dSBarry Smith PetscFunctionReturn(0); 11538965ea79SLois Curfman McInnes } 11548965ea79SLois Curfman McInnes 1155e090d566SSatish Balay #include "petscsys.h" 11568965ea79SLois Curfman McInnes 1157*4a2ae208SSatish Balay #undef __FUNCT__ 1158*4a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIDense_DenseInFile" 115990ace30eSBarry Smith int MatLoad_MPIDense_DenseInFile(MPI_Comm comm,int fd,int M,int N,Mat *newmat) 116090ace30eSBarry Smith { 116140011551SBarry Smith int *rowners,i,size,rank,m,ierr,nz,j; 116290ace30eSBarry Smith Scalar *array,*vals,*vals_ptr; 116390ace30eSBarry Smith MPI_Status status; 116490ace30eSBarry Smith 11653a40ed3dSBarry Smith PetscFunctionBegin; 1166d132466eSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 1167d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 116890ace30eSBarry Smith 116990ace30eSBarry Smith /* determine ownership of all rows */ 117090ace30eSBarry Smith m = M/size + ((M % size) > rank); 1171b0a32e0cSBarry Smith ierr = PetscMalloc((size+2)*sizeof(int),&rowners);CHKERRQ(ierr); 1172ca161407SBarry Smith ierr = MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 117390ace30eSBarry Smith rowners[0] = 0; 117490ace30eSBarry Smith for (i=2; i<=size; i++) { 117590ace30eSBarry Smith rowners[i] += rowners[i-1]; 117690ace30eSBarry Smith } 117790ace30eSBarry Smith 117890ace30eSBarry Smith ierr = MatCreateMPIDense(comm,m,PETSC_DECIDE,M,N,PETSC_NULL,newmat);CHKERRQ(ierr); 117990ace30eSBarry Smith ierr = MatGetArray(*newmat,&array);CHKERRQ(ierr); 118090ace30eSBarry Smith 118190ace30eSBarry Smith if (!rank) { 1182b0a32e0cSBarry Smith ierr = PetscMalloc(m*N*sizeof(Scalar),&vals);CHKERRQ(ierr); 118390ace30eSBarry Smith 118490ace30eSBarry Smith /* read in my part of the matrix numerical values */ 11850752156aSBarry Smith ierr = PetscBinaryRead(fd,vals,m*N,PETSC_SCALAR);CHKERRQ(ierr); 118690ace30eSBarry Smith 118790ace30eSBarry Smith /* insert into matrix-by row (this is why cannot directly read into array */ 118890ace30eSBarry Smith vals_ptr = vals; 118990ace30eSBarry Smith for (i=0; i<m; i++) { 119090ace30eSBarry Smith for (j=0; j<N; j++) { 119190ace30eSBarry Smith array[i + j*m] = *vals_ptr++; 119290ace30eSBarry Smith } 119390ace30eSBarry Smith } 119490ace30eSBarry Smith 119590ace30eSBarry Smith /* read in other processors and ship out */ 119690ace30eSBarry Smith for (i=1; i<size; i++) { 119790ace30eSBarry Smith nz = (rowners[i+1] - rowners[i])*N; 11980752156aSBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 1199ca161407SBarry Smith ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,(*newmat)->tag,comm);CHKERRQ(ierr); 120090ace30eSBarry Smith } 12013a40ed3dSBarry Smith } else { 120290ace30eSBarry Smith /* receive numeric values */ 1203b0a32e0cSBarry Smith ierr = PetscMalloc(m*N*sizeof(Scalar),&vals);CHKERRQ(ierr); 120490ace30eSBarry Smith 120590ace30eSBarry Smith /* receive message of values*/ 1206ca161407SBarry Smith ierr = MPI_Recv(vals,m*N,MPIU_SCALAR,0,(*newmat)->tag,comm,&status);CHKERRQ(ierr); 120790ace30eSBarry Smith 120890ace30eSBarry Smith /* insert into matrix-by row (this is why cannot directly read into array */ 120990ace30eSBarry Smith vals_ptr = vals; 121090ace30eSBarry Smith for (i=0; i<m; i++) { 121190ace30eSBarry Smith for (j=0; j<N; j++) { 121290ace30eSBarry Smith array[i + j*m] = *vals_ptr++; 121390ace30eSBarry Smith } 121490ace30eSBarry Smith } 121590ace30eSBarry Smith } 1216606d414cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 1217606d414cSSatish Balay ierr = PetscFree(vals);CHKERRQ(ierr); 12186d4a8577SBarry Smith ierr = MatAssemblyBegin(*newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 12196d4a8577SBarry Smith ierr = MatAssemblyEnd(*newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 12203a40ed3dSBarry Smith PetscFunctionReturn(0); 122190ace30eSBarry Smith } 122290ace30eSBarry Smith 1223273d9f13SBarry Smith EXTERN_C_BEGIN 1224*4a2ae208SSatish Balay #undef __FUNCT__ 1225*4a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIDense" 1226b0a32e0cSBarry Smith int MatLoad_MPIDense(PetscViewer viewer,MatType type,Mat *newmat) 12278965ea79SLois Curfman McInnes { 12288965ea79SLois Curfman McInnes Mat A; 12298965ea79SLois Curfman McInnes Scalar *vals,*svals; 123019bcc07fSBarry Smith MPI_Comm comm = ((PetscObject)viewer)->comm; 12318965ea79SLois Curfman McInnes MPI_Status status; 12328965ea79SLois Curfman McInnes int header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,maxnz,*cols; 12338965ea79SLois Curfman McInnes int *ourlens,*sndcounts = 0,*procsnz = 0,*offlens,jj,*mycols,*smycols; 123419bcc07fSBarry Smith int tag = ((PetscObject)viewer)->tag; 12353a40ed3dSBarry Smith int i,nz,ierr,j,rstart,rend,fd; 12368965ea79SLois Curfman McInnes 12373a40ed3dSBarry Smith PetscFunctionBegin; 1238d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1239d132466eSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 12408965ea79SLois Curfman McInnes if (!rank) { 1241b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 12420752156aSBarry Smith ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 124329bbc08cSBarry Smith if (header[0] != MAT_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 12448965ea79SLois Curfman McInnes } 12458965ea79SLois Curfman McInnes 1246ca161407SBarry Smith ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr); 124790ace30eSBarry Smith M = header[1]; N = header[2]; nz = header[3]; 124890ace30eSBarry Smith 124990ace30eSBarry Smith /* 125090ace30eSBarry Smith Handle case where matrix is stored on disk as a dense matrix 125190ace30eSBarry Smith */ 125290ace30eSBarry Smith if (nz == MATRIX_BINARY_FORMAT_DENSE) { 12533a40ed3dSBarry Smith ierr = MatLoad_MPIDense_DenseInFile(comm,fd,M,N,newmat);CHKERRQ(ierr); 12543a40ed3dSBarry Smith PetscFunctionReturn(0); 125590ace30eSBarry Smith } 125690ace30eSBarry Smith 12578965ea79SLois Curfman McInnes /* determine ownership of all rows */ 12588965ea79SLois Curfman McInnes m = M/size + ((M % size) > rank); 1259b0a32e0cSBarry Smith ierr = PetscMalloc((size+2)*sizeof(int),&rowners);CHKERRQ(ierr); 1260ca161407SBarry Smith ierr = MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 12618965ea79SLois Curfman McInnes rowners[0] = 0; 12628965ea79SLois Curfman McInnes for (i=2; i<=size; i++) { 12638965ea79SLois Curfman McInnes rowners[i] += rowners[i-1]; 12648965ea79SLois Curfman McInnes } 12658965ea79SLois Curfman McInnes rstart = rowners[rank]; 12668965ea79SLois Curfman McInnes rend = rowners[rank+1]; 12678965ea79SLois Curfman McInnes 12688965ea79SLois Curfman McInnes /* distribute row lengths to all processors */ 1269b0a32e0cSBarry Smith ierr = PetscMalloc(2*(rend-rstart)*sizeof(int),&ourlens);CHKERRQ(ierr); 12708965ea79SLois Curfman McInnes offlens = ourlens + (rend-rstart); 12718965ea79SLois Curfman McInnes if (!rank) { 1272b0a32e0cSBarry Smith ierr = PetscMalloc(M*sizeof(int),&rowlengths);CHKERRQ(ierr); 12730752156aSBarry Smith ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 1274b0a32e0cSBarry Smith ierr = PetscMalloc(size*sizeof(int),&sndcounts);CHKERRQ(ierr); 12758965ea79SLois Curfman McInnes for (i=0; i<size; i++) sndcounts[i] = rowners[i+1] - rowners[i]; 1276ca161407SBarry Smith ierr = MPI_Scatterv(rowlengths,sndcounts,rowners,MPI_INT,ourlens,rend-rstart,MPI_INT,0,comm);CHKERRQ(ierr); 1277606d414cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 1278ca161407SBarry Smith } else { 1279ca161407SBarry Smith ierr = MPI_Scatterv(0,0,0,MPI_INT,ourlens,rend-rstart,MPI_INT,0,comm);CHKERRQ(ierr); 12808965ea79SLois Curfman McInnes } 12818965ea79SLois Curfman McInnes 12828965ea79SLois Curfman McInnes if (!rank) { 12838965ea79SLois Curfman McInnes /* calculate the number of nonzeros on each processor */ 1284b0a32e0cSBarry Smith ierr = PetscMalloc(size*sizeof(int),&procsnz);CHKERRQ(ierr); 1285549d3d68SSatish Balay ierr = PetscMemzero(procsnz,size*sizeof(int));CHKERRQ(ierr); 12868965ea79SLois Curfman McInnes for (i=0; i<size; i++) { 12878965ea79SLois Curfman McInnes for (j=rowners[i]; j< rowners[i+1]; j++) { 12888965ea79SLois Curfman McInnes procsnz[i] += rowlengths[j]; 12898965ea79SLois Curfman McInnes } 12908965ea79SLois Curfman McInnes } 1291606d414cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 12928965ea79SLois Curfman McInnes 12938965ea79SLois Curfman McInnes /* determine max buffer needed and allocate it */ 12948965ea79SLois Curfman McInnes maxnz = 0; 12958965ea79SLois Curfman McInnes for (i=0; i<size; i++) { 12960452661fSBarry Smith maxnz = PetscMax(maxnz,procsnz[i]); 12978965ea79SLois Curfman McInnes } 1298b0a32e0cSBarry Smith ierr = PetscMalloc(maxnz*sizeof(int),&cols);CHKERRQ(ierr); 12998965ea79SLois Curfman McInnes 13008965ea79SLois Curfman McInnes /* read in my part of the matrix column indices */ 13018965ea79SLois Curfman McInnes nz = procsnz[0]; 1302b0a32e0cSBarry Smith ierr = PetscMalloc(nz*sizeof(int),&mycols);CHKERRQ(ierr); 13030752156aSBarry Smith ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 13048965ea79SLois Curfman McInnes 13058965ea79SLois Curfman McInnes /* read in every one elses and ship off */ 13068965ea79SLois Curfman McInnes for (i=1; i<size; i++) { 13078965ea79SLois Curfman McInnes nz = procsnz[i]; 13080752156aSBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 1309ca161407SBarry Smith ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr); 13108965ea79SLois Curfman McInnes } 1311606d414cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 13123a40ed3dSBarry Smith } else { 13138965ea79SLois Curfman McInnes /* determine buffer space needed for message */ 13148965ea79SLois Curfman McInnes nz = 0; 13158965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 13168965ea79SLois Curfman McInnes nz += ourlens[i]; 13178965ea79SLois Curfman McInnes } 1318b0a32e0cSBarry Smith ierr = PetscMalloc(nz*sizeof(int),&mycols);CHKERRQ(ierr); 13198965ea79SLois Curfman McInnes 13208965ea79SLois Curfman McInnes /* receive message of column indices*/ 1321ca161407SBarry Smith ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr); 1322ca161407SBarry Smith ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr); 132329bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 13248965ea79SLois Curfman McInnes } 13258965ea79SLois Curfman McInnes 13268965ea79SLois Curfman McInnes /* loop over local rows, determining number of off diagonal entries */ 1327549d3d68SSatish Balay ierr = PetscMemzero(offlens,m*sizeof(int));CHKERRQ(ierr); 13288965ea79SLois Curfman McInnes jj = 0; 13298965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 13308965ea79SLois Curfman McInnes for (j=0; j<ourlens[i]; j++) { 13318965ea79SLois Curfman McInnes if (mycols[jj] < rstart || mycols[jj] >= rend) offlens[i]++; 13328965ea79SLois Curfman McInnes jj++; 13338965ea79SLois Curfman McInnes } 13348965ea79SLois Curfman McInnes } 13358965ea79SLois Curfman McInnes 13368965ea79SLois Curfman McInnes /* create our matrix */ 13378965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 13388965ea79SLois Curfman McInnes ourlens[i] -= offlens[i]; 13398965ea79SLois Curfman McInnes } 1340b4fd4287SBarry Smith ierr = MatCreateMPIDense(comm,m,PETSC_DECIDE,M,N,PETSC_NULL,newmat);CHKERRQ(ierr); 13418965ea79SLois Curfman McInnes A = *newmat; 13428965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 13438965ea79SLois Curfman McInnes ourlens[i] += offlens[i]; 13448965ea79SLois Curfman McInnes } 13458965ea79SLois Curfman McInnes 13468965ea79SLois Curfman McInnes if (!rank) { 1347b0a32e0cSBarry Smith ierr = PetscMalloc(maxnz*sizeof(Scalar),&vals);CHKERRQ(ierr); 13488965ea79SLois Curfman McInnes 13498965ea79SLois Curfman McInnes /* read in my part of the matrix numerical values */ 13508965ea79SLois Curfman McInnes nz = procsnz[0]; 13510752156aSBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 13528965ea79SLois Curfman McInnes 13538965ea79SLois Curfman McInnes /* insert into matrix */ 13548965ea79SLois Curfman McInnes jj = rstart; 13558965ea79SLois Curfman McInnes smycols = mycols; 13568965ea79SLois Curfman McInnes svals = vals; 13578965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 13588965ea79SLois Curfman McInnes ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 13598965ea79SLois Curfman McInnes smycols += ourlens[i]; 13608965ea79SLois Curfman McInnes svals += ourlens[i]; 13618965ea79SLois Curfman McInnes jj++; 13628965ea79SLois Curfman McInnes } 13638965ea79SLois Curfman McInnes 13648965ea79SLois Curfman McInnes /* read in other processors and ship out */ 13658965ea79SLois Curfman McInnes for (i=1; i<size; i++) { 13668965ea79SLois Curfman McInnes nz = procsnz[i]; 13670752156aSBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 1368ca161407SBarry Smith ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 13698965ea79SLois Curfman McInnes } 1370606d414cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 13713a40ed3dSBarry Smith } else { 13728965ea79SLois Curfman McInnes /* receive numeric values */ 1373b0a32e0cSBarry Smith ierr = PetscMalloc(nz*sizeof(Scalar),&vals);CHKERRQ(ierr); 13748965ea79SLois Curfman McInnes 13758965ea79SLois Curfman McInnes /* receive message of values*/ 1376ca161407SBarry Smith ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 1377ca161407SBarry Smith ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 137829bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 13798965ea79SLois Curfman McInnes 13808965ea79SLois Curfman McInnes /* insert into matrix */ 13818965ea79SLois Curfman McInnes jj = rstart; 13828965ea79SLois Curfman McInnes smycols = mycols; 13838965ea79SLois Curfman McInnes svals = vals; 13848965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 13858965ea79SLois Curfman McInnes ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 13868965ea79SLois Curfman McInnes smycols += ourlens[i]; 13878965ea79SLois Curfman McInnes svals += ourlens[i]; 13888965ea79SLois Curfman McInnes jj++; 13898965ea79SLois Curfman McInnes } 13908965ea79SLois Curfman McInnes } 1391606d414cSSatish Balay ierr = PetscFree(ourlens);CHKERRQ(ierr); 1392606d414cSSatish Balay ierr = PetscFree(vals);CHKERRQ(ierr); 1393606d414cSSatish Balay ierr = PetscFree(mycols);CHKERRQ(ierr); 1394606d414cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 13958965ea79SLois Curfman McInnes 13966d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 13976d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 13983a40ed3dSBarry Smith PetscFunctionReturn(0); 13998965ea79SLois Curfman McInnes } 1400273d9f13SBarry Smith EXTERN_C_END 140190ace30eSBarry Smith 140290ace30eSBarry Smith 140390ace30eSBarry Smith 140490ace30eSBarry Smith 140590ace30eSBarry Smith 1406