1be1d678aSKris Buschelman #define PETSCMAT_DLL 2be1d678aSKris Buschelman 3ed3cc1f0SBarry Smith /* 4ed3cc1f0SBarry Smith Basic functions for basic parallel dense matrices. 5ed3cc1f0SBarry Smith */ 6ed3cc1f0SBarry Smith 704fea9ffSBarry Smith 889ac3759SBarry Smith #include "src/mat/impls/dense/mpi/mpidense.h" /*I "petscmat.h" I*/ 9eae6fb2eSBarry Smith #if defined(PETSC_HAVE_PLAPACK) 10eae6fb2eSBarry Smith static PetscMPIInt Plapack_nprows,Plapack_npcols,Plapack_ierror,Plapack_nb_alg; 11eae6fb2eSBarry Smith static MPI_Comm Plapack_comm_2d; 12eae6fb2eSBarry Smith #endif 138965ea79SLois Curfman McInnes 14ba8c8a56SBarry Smith #undef __FUNCT__ 15ab92ecdeSBarry Smith #define __FUNCT__ "MatDenseGetLocalMatrix" 16ab92ecdeSBarry Smith /*@ 17ab92ecdeSBarry Smith 18ab92ecdeSBarry Smith MatDenseGetLocalMatrix - For a MATMPIDENSE or MATSEQDENSE matrix returns the sequential 19ab92ecdeSBarry Smith matrix that represents the operator. For sequential matrices it returns itself. 20ab92ecdeSBarry Smith 21ab92ecdeSBarry Smith Input Parameter: 22ab92ecdeSBarry Smith . A - the Seq or MPI dense matrix 23ab92ecdeSBarry Smith 24ab92ecdeSBarry Smith Output Parameter: 25ab92ecdeSBarry Smith . B - the inner matrix 26ab92ecdeSBarry Smith 278e6c10adSSatish Balay Level: intermediate 288e6c10adSSatish Balay 29ab92ecdeSBarry Smith @*/ 30ab92ecdeSBarry Smith PetscErrorCode MatDenseGetLocalMatrix(Mat A,Mat *B) 31ab92ecdeSBarry Smith { 32ab92ecdeSBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 33ab92ecdeSBarry Smith PetscErrorCode ierr; 34ab92ecdeSBarry Smith PetscTruth flg; 35ab92ecdeSBarry Smith 36ab92ecdeSBarry Smith PetscFunctionBegin; 37ab92ecdeSBarry Smith ierr = PetscTypeCompare((PetscObject)A,MATMPIDENSE,&flg);CHKERRQ(ierr); 38ab92ecdeSBarry Smith if (flg) { 39ab92ecdeSBarry Smith *B = mat->A; 40ab92ecdeSBarry Smith } else { 41ab92ecdeSBarry Smith *B = A; 42ab92ecdeSBarry Smith } 43ab92ecdeSBarry Smith PetscFunctionReturn(0); 44ab92ecdeSBarry Smith } 45ab92ecdeSBarry Smith 46ab92ecdeSBarry Smith #undef __FUNCT__ 47ba8c8a56SBarry Smith #define __FUNCT__ "MatGetRow_MPIDense" 48ba8c8a56SBarry Smith PetscErrorCode MatGetRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 49ba8c8a56SBarry Smith { 50ba8c8a56SBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 51ba8c8a56SBarry Smith PetscErrorCode ierr; 52899cda47SBarry Smith PetscInt lrow,rstart = A->rmap.rstart,rend = A->rmap.rend; 53ba8c8a56SBarry Smith 54ba8c8a56SBarry Smith PetscFunctionBegin; 55ba8c8a56SBarry Smith if (row < rstart || row >= rend) SETERRQ(PETSC_ERR_SUP,"only local rows") 56ba8c8a56SBarry Smith lrow = row - rstart; 57ba8c8a56SBarry Smith ierr = MatGetRow(mat->A,lrow,nz,(const PetscInt **)idx,(const PetscScalar **)v);CHKERRQ(ierr); 58ba8c8a56SBarry Smith PetscFunctionReturn(0); 59ba8c8a56SBarry Smith } 60ba8c8a56SBarry Smith 61ba8c8a56SBarry Smith #undef __FUNCT__ 62ba8c8a56SBarry Smith #define __FUNCT__ "MatRestoreRow_MPIDense" 63ba8c8a56SBarry Smith PetscErrorCode MatRestoreRow_MPIDense(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 64ba8c8a56SBarry Smith { 65ba8c8a56SBarry Smith PetscErrorCode ierr; 66ba8c8a56SBarry Smith 67ba8c8a56SBarry Smith PetscFunctionBegin; 68ba8c8a56SBarry Smith if (idx) {ierr = PetscFree(*idx);CHKERRQ(ierr);} 69ba8c8a56SBarry Smith if (v) {ierr = PetscFree(*v);CHKERRQ(ierr);} 70ba8c8a56SBarry Smith PetscFunctionReturn(0); 71ba8c8a56SBarry Smith } 72ba8c8a56SBarry Smith 730de54da6SSatish Balay EXTERN_C_BEGIN 744a2ae208SSatish Balay #undef __FUNCT__ 754a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIDense" 76be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPIDense(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *B) 770de54da6SSatish Balay { 780de54da6SSatish Balay Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 796849ba73SBarry Smith PetscErrorCode ierr; 80899cda47SBarry Smith PetscInt m = A->rmap.n,rstart = A->rmap.rstart; 8187828ca2SBarry Smith PetscScalar *array; 820de54da6SSatish Balay MPI_Comm comm; 830de54da6SSatish Balay 840de54da6SSatish Balay PetscFunctionBegin; 85899cda47SBarry Smith if (A->rmap.N != A->cmap.N) SETERRQ(PETSC_ERR_SUP,"Only square matrices supported."); 860de54da6SSatish Balay 870de54da6SSatish Balay /* The reuse aspect is not implemented efficiently */ 880de54da6SSatish Balay if (reuse) { ierr = MatDestroy(*B);CHKERRQ(ierr);} 890de54da6SSatish Balay 900de54da6SSatish Balay ierr = PetscObjectGetComm((PetscObject)(mdn->A),&comm);CHKERRQ(ierr); 910de54da6SSatish Balay ierr = MatGetArray(mdn->A,&array);CHKERRQ(ierr); 92f69a0ea3SMatthew Knepley ierr = MatCreate(comm,B);CHKERRQ(ierr); 93f69a0ea3SMatthew Knepley ierr = MatSetSizes(*B,m,m,m,m);CHKERRQ(ierr); 947adad957SLisandro Dalcin ierr = MatSetType(*B,((PetscObject)mdn->A)->type_name);CHKERRQ(ierr); 955c5985e7SKris Buschelman ierr = MatSeqDenseSetPreallocation(*B,array+m*rstart);CHKERRQ(ierr); 960de54da6SSatish Balay ierr = MatRestoreArray(mdn->A,&array);CHKERRQ(ierr); 970de54da6SSatish Balay ierr = MatAssemblyBegin(*B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 980de54da6SSatish Balay ierr = MatAssemblyEnd(*B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 990de54da6SSatish Balay 1000de54da6SSatish Balay *iscopy = PETSC_TRUE; 1010de54da6SSatish Balay PetscFunctionReturn(0); 1020de54da6SSatish Balay } 1030de54da6SSatish Balay EXTERN_C_END 1040de54da6SSatish Balay 1054a2ae208SSatish Balay #undef __FUNCT__ 1064a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIDense" 10713f74950SBarry Smith PetscErrorCode MatSetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],const PetscScalar v[],InsertMode addv) 1088965ea79SLois Curfman McInnes { 10939b7565bSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)mat->data; 110dfbe8321SBarry Smith PetscErrorCode ierr; 111899cda47SBarry Smith PetscInt i,j,rstart = mat->rmap.rstart,rend = mat->rmap.rend,row; 112273d9f13SBarry Smith PetscTruth roworiented = A->roworiented; 1138965ea79SLois Curfman McInnes 1143a40ed3dSBarry Smith PetscFunctionBegin; 1158965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 1165ef9f2a5SBarry Smith if (idxm[i] < 0) continue; 117899cda47SBarry Smith if (idxm[i] >= mat->rmap.N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 1188965ea79SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 1198965ea79SLois Curfman McInnes row = idxm[i] - rstart; 12039b7565bSBarry Smith if (roworiented) { 12139b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv);CHKERRQ(ierr); 1223a40ed3dSBarry Smith } else { 1238965ea79SLois Curfman McInnes for (j=0; j<n; j++) { 1245ef9f2a5SBarry Smith if (idxn[j] < 0) continue; 125899cda47SBarry Smith if (idxn[j] >= mat->cmap.N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 12639b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv);CHKERRQ(ierr); 12739b7565bSBarry Smith } 1288965ea79SLois Curfman McInnes } 1293a40ed3dSBarry Smith } else { 1303782ba37SSatish Balay if (!A->donotstash) { 13139b7565bSBarry Smith if (roworiented) { 1328798bf22SSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,idxm[i],n,idxn,v+i*n);CHKERRQ(ierr); 133d36fbae8SSatish Balay } else { 1348798bf22SSatish Balay ierr = MatStashValuesCol_Private(&mat->stash,idxm[i],n,idxn,v+i,m);CHKERRQ(ierr); 13539b7565bSBarry Smith } 136b49de8d1SLois Curfman McInnes } 137b49de8d1SLois Curfman McInnes } 1383782ba37SSatish Balay } 1393a40ed3dSBarry Smith PetscFunctionReturn(0); 140b49de8d1SLois Curfman McInnes } 141b49de8d1SLois Curfman McInnes 1424a2ae208SSatish Balay #undef __FUNCT__ 1434a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIDense" 14413f74950SBarry Smith PetscErrorCode MatGetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 145b49de8d1SLois Curfman McInnes { 146b49de8d1SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 147dfbe8321SBarry Smith PetscErrorCode ierr; 148899cda47SBarry Smith PetscInt i,j,rstart = mat->rmap.rstart,rend = mat->rmap.rend,row; 149b49de8d1SLois Curfman McInnes 1503a40ed3dSBarry Smith PetscFunctionBegin; 151b49de8d1SLois Curfman McInnes for (i=0; i<m; i++) { 15297e567efSBarry Smith if (idxm[i] < 0) continue; /* SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); */ 153899cda47SBarry Smith if (idxm[i] >= mat->rmap.N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 154b49de8d1SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 155b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 156b49de8d1SLois Curfman McInnes for (j=0; j<n; j++) { 15797e567efSBarry Smith if (idxn[j] < 0) continue; /* SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); */ 158899cda47SBarry Smith if (idxn[j] >= mat->cmap.N) { 15929bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 160a8c6a408SBarry Smith } 161b49de8d1SLois Curfman McInnes ierr = MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j);CHKERRQ(ierr); 162b49de8d1SLois Curfman McInnes } 163a8c6a408SBarry Smith } else { 16429bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 1658965ea79SLois Curfman McInnes } 1668965ea79SLois Curfman McInnes } 1673a40ed3dSBarry Smith PetscFunctionReturn(0); 1688965ea79SLois Curfman McInnes } 1698965ea79SLois Curfman McInnes 1704a2ae208SSatish Balay #undef __FUNCT__ 1714a2ae208SSatish Balay #define __FUNCT__ "MatGetArray_MPIDense" 172dfbe8321SBarry Smith PetscErrorCode MatGetArray_MPIDense(Mat A,PetscScalar *array[]) 173ff14e315SSatish Balay { 174ff14e315SSatish Balay Mat_MPIDense *a = (Mat_MPIDense*)A->data; 175dfbe8321SBarry Smith PetscErrorCode ierr; 176ff14e315SSatish Balay 1773a40ed3dSBarry Smith PetscFunctionBegin; 178ff14e315SSatish Balay ierr = MatGetArray(a->A,array);CHKERRQ(ierr); 1793a40ed3dSBarry Smith PetscFunctionReturn(0); 180ff14e315SSatish Balay } 181ff14e315SSatish Balay 1824a2ae208SSatish Balay #undef __FUNCT__ 1834a2ae208SSatish Balay #define __FUNCT__ "MatGetSubMatrix_MPIDense" 18413f74950SBarry Smith static PetscErrorCode MatGetSubMatrix_MPIDense(Mat A,IS isrow,IS iscol,PetscInt cs,MatReuse scall,Mat *B) 185ca3fa75bSLois Curfman McInnes { 186ca3fa75bSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data,*newmatd; 187ca3fa75bSLois Curfman McInnes Mat_SeqDense *lmat = (Mat_SeqDense*)mat->A->data; 1886849ba73SBarry Smith PetscErrorCode ierr; 18913f74950SBarry Smith PetscInt i,j,*irow,*icol,rstart,rend,nrows,ncols,nlrows,nlcols; 19087828ca2SBarry Smith PetscScalar *av,*bv,*v = lmat->v; 191ca3fa75bSLois Curfman McInnes Mat newmat; 192ca3fa75bSLois Curfman McInnes 193ca3fa75bSLois Curfman McInnes PetscFunctionBegin; 194ca3fa75bSLois Curfman McInnes ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr); 195ca3fa75bSLois Curfman McInnes ierr = ISGetIndices(iscol,&icol);CHKERRQ(ierr); 196b9b97703SBarry Smith ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr); 197b9b97703SBarry Smith ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr); 198ca3fa75bSLois Curfman McInnes 199ca3fa75bSLois Curfman McInnes /* No parallel redistribution currently supported! Should really check each index set 2007eba5e9cSLois Curfman McInnes to comfirm that it is OK. ... Currently supports only submatrix same partitioning as 2017eba5e9cSLois Curfman McInnes original matrix! */ 202ca3fa75bSLois Curfman McInnes 203ca3fa75bSLois Curfman McInnes ierr = MatGetLocalSize(A,&nlrows,&nlcols);CHKERRQ(ierr); 2047eba5e9cSLois Curfman McInnes ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr); 205ca3fa75bSLois Curfman McInnes 206ca3fa75bSLois Curfman McInnes /* Check submatrix call */ 207ca3fa75bSLois Curfman McInnes if (scall == MAT_REUSE_MATRIX) { 20829bbc08cSBarry Smith /* SETERRQ(PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */ 2097eba5e9cSLois Curfman McInnes /* Really need to test rows and column sizes! */ 210ca3fa75bSLois Curfman McInnes newmat = *B; 211ca3fa75bSLois Curfman McInnes } else { 212ca3fa75bSLois Curfman McInnes /* Create and fill new matrix */ 2137adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)A)->comm,&newmat);CHKERRQ(ierr); 214f69a0ea3SMatthew Knepley ierr = MatSetSizes(newmat,nrows,cs,PETSC_DECIDE,ncols);CHKERRQ(ierr); 2157adad957SLisandro Dalcin ierr = MatSetType(newmat,((PetscObject)A)->type_name);CHKERRQ(ierr); 216878740d9SKris Buschelman ierr = MatMPIDenseSetPreallocation(newmat,PETSC_NULL);CHKERRQ(ierr); 217ca3fa75bSLois Curfman McInnes } 218ca3fa75bSLois Curfman McInnes 219ca3fa75bSLois Curfman McInnes /* Now extract the data pointers and do the copy, column at a time */ 220ca3fa75bSLois Curfman McInnes newmatd = (Mat_MPIDense*)newmat->data; 221ca3fa75bSLois Curfman McInnes bv = ((Mat_SeqDense *)newmatd->A->data)->v; 222ca3fa75bSLois Curfman McInnes 223ca3fa75bSLois Curfman McInnes for (i=0; i<ncols; i++) { 224ca3fa75bSLois Curfman McInnes av = v + nlrows*icol[i]; 225ca3fa75bSLois Curfman McInnes for (j=0; j<nrows; j++) { 2267eba5e9cSLois Curfman McInnes *bv++ = av[irow[j] - rstart]; 227ca3fa75bSLois Curfman McInnes } 228ca3fa75bSLois Curfman McInnes } 229ca3fa75bSLois Curfman McInnes 230ca3fa75bSLois Curfman McInnes /* Assemble the matrices so that the correct flags are set */ 231ca3fa75bSLois Curfman McInnes ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 232ca3fa75bSLois Curfman McInnes ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 233ca3fa75bSLois Curfman McInnes 234ca3fa75bSLois Curfman McInnes /* Free work space */ 235ca3fa75bSLois Curfman McInnes ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr); 236ca3fa75bSLois Curfman McInnes ierr = ISRestoreIndices(iscol,&icol);CHKERRQ(ierr); 237ca3fa75bSLois Curfman McInnes *B = newmat; 238ca3fa75bSLois Curfman McInnes PetscFunctionReturn(0); 239ca3fa75bSLois Curfman McInnes } 240ca3fa75bSLois Curfman McInnes 2414a2ae208SSatish Balay #undef __FUNCT__ 2424a2ae208SSatish Balay #define __FUNCT__ "MatRestoreArray_MPIDense" 243dfbe8321SBarry Smith PetscErrorCode MatRestoreArray_MPIDense(Mat A,PetscScalar *array[]) 244ff14e315SSatish Balay { 2453a40ed3dSBarry Smith PetscFunctionBegin; 2463a40ed3dSBarry Smith PetscFunctionReturn(0); 247ff14e315SSatish Balay } 248ff14e315SSatish Balay 2494a2ae208SSatish Balay #undef __FUNCT__ 2504a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIDense" 251dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode) 2528965ea79SLois Curfman McInnes { 25339ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 2547adad957SLisandro Dalcin MPI_Comm comm = ((PetscObject)mat)->comm; 255dfbe8321SBarry Smith PetscErrorCode ierr; 25613f74950SBarry Smith PetscInt nstash,reallocs; 2578965ea79SLois Curfman McInnes InsertMode addv; 2588965ea79SLois Curfman McInnes 2593a40ed3dSBarry Smith PetscFunctionBegin; 2608965ea79SLois Curfman McInnes /* make sure all processors are either in INSERTMODE or ADDMODE */ 261ca161407SBarry Smith ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,comm);CHKERRQ(ierr); 2627056b6fcSBarry Smith if (addv == (ADD_VALUES|INSERT_VALUES)) { 26329bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Cannot mix adds/inserts on different procs"); 2648965ea79SLois Curfman McInnes } 265e0fa3b82SLois Curfman McInnes mat->insertmode = addv; /* in case this processor had no cache */ 2668965ea79SLois Curfman McInnes 2671e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap.range);CHKERRQ(ierr); 2688798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 269ae15b995SBarry Smith ierr = PetscInfo2(mdn->A,"Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 2703a40ed3dSBarry Smith PetscFunctionReturn(0); 2718965ea79SLois Curfman McInnes } 2728965ea79SLois Curfman McInnes 2734a2ae208SSatish Balay #undef __FUNCT__ 2744a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIDense" 275dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode) 2768965ea79SLois Curfman McInnes { 27739ddd567SLois Curfman McInnes Mat_MPIDense *mdn=(Mat_MPIDense*)mat->data; 2786849ba73SBarry Smith PetscErrorCode ierr; 27913f74950SBarry Smith PetscInt i,*row,*col,flg,j,rstart,ncols; 28013f74950SBarry Smith PetscMPIInt n; 28187828ca2SBarry Smith PetscScalar *val; 282e0fa3b82SLois Curfman McInnes InsertMode addv=mat->insertmode; 2838965ea79SLois Curfman McInnes 2843a40ed3dSBarry Smith PetscFunctionBegin; 2858965ea79SLois Curfman McInnes /* wait on receives */ 2867ef1d9bdSSatish Balay while (1) { 2878798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 2887ef1d9bdSSatish Balay if (!flg) break; 2898965ea79SLois Curfman McInnes 2907ef1d9bdSSatish Balay for (i=0; i<n;) { 2917ef1d9bdSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 2927ef1d9bdSSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 2937ef1d9bdSSatish Balay if (j < n) ncols = j-i; 2947ef1d9bdSSatish Balay else ncols = n-i; 2957ef1d9bdSSatish Balay /* Now assemble all these values with a single function call */ 2967ef1d9bdSSatish Balay ierr = MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 2977ef1d9bdSSatish Balay i = j; 2988965ea79SLois Curfman McInnes } 2997ef1d9bdSSatish Balay } 3008798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 3018965ea79SLois Curfman McInnes 30239ddd567SLois Curfman McInnes ierr = MatAssemblyBegin(mdn->A,mode);CHKERRQ(ierr); 30339ddd567SLois Curfman McInnes ierr = MatAssemblyEnd(mdn->A,mode);CHKERRQ(ierr); 3048965ea79SLois Curfman McInnes 3056d4a8577SBarry Smith if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 30639ddd567SLois Curfman McInnes ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 3078965ea79SLois Curfman McInnes } 3083a40ed3dSBarry Smith PetscFunctionReturn(0); 3098965ea79SLois Curfman McInnes } 3108965ea79SLois Curfman McInnes 3114a2ae208SSatish Balay #undef __FUNCT__ 3124a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIDense" 313dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIDense(Mat A) 3148965ea79SLois Curfman McInnes { 315dfbe8321SBarry Smith PetscErrorCode ierr; 31639ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 3173a40ed3dSBarry Smith 3183a40ed3dSBarry Smith PetscFunctionBegin; 3193a40ed3dSBarry Smith ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 3203a40ed3dSBarry Smith PetscFunctionReturn(0); 3218965ea79SLois Curfman McInnes } 3228965ea79SLois Curfman McInnes 3238965ea79SLois Curfman McInnes /* the code does not do the diagonal entries correctly unless the 3248965ea79SLois Curfman McInnes matrix is square and the column and row owerships are identical. 3258965ea79SLois Curfman McInnes This is a BUG. The only way to fix it seems to be to access 3263501a2bdSLois Curfman McInnes mdn->A and mdn->B directly and not through the MatZeroRows() 3278965ea79SLois Curfman McInnes routine. 3288965ea79SLois Curfman McInnes */ 3294a2ae208SSatish Balay #undef __FUNCT__ 3304a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIDense" 331f4df32b1SMatthew Knepley PetscErrorCode MatZeroRows_MPIDense(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag) 3328965ea79SLois Curfman McInnes { 33339ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 3346849ba73SBarry Smith PetscErrorCode ierr; 335899cda47SBarry Smith PetscInt i,*owners = A->rmap.range; 33613f74950SBarry Smith PetscInt *nprocs,j,idx,nsends; 33713f74950SBarry Smith PetscInt nmax,*svalues,*starts,*owner,nrecvs; 3387adad957SLisandro Dalcin PetscInt *rvalues,tag = ((PetscObject)A)->tag,count,base,slen,*source; 33913f74950SBarry Smith PetscInt *lens,*lrows,*values; 34013f74950SBarry Smith PetscMPIInt n,imdex,rank = l->rank,size = l->size; 3417adad957SLisandro Dalcin MPI_Comm comm = ((PetscObject)A)->comm; 3428965ea79SLois Curfman McInnes MPI_Request *send_waits,*recv_waits; 3438965ea79SLois Curfman McInnes MPI_Status recv_status,*send_status; 34435d8aa7fSBarry Smith PetscTruth found; 3458965ea79SLois Curfman McInnes 3463a40ed3dSBarry Smith PetscFunctionBegin; 3478965ea79SLois Curfman McInnes /* first count number of contributors to each processor */ 34813f74950SBarry Smith ierr = PetscMalloc(2*size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr); 34913f74950SBarry Smith ierr = PetscMemzero(nprocs,2*size*sizeof(PetscInt));CHKERRQ(ierr); 35013f74950SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),&owner);CHKERRQ(ierr); /* see note*/ 3518965ea79SLois Curfman McInnes for (i=0; i<N; i++) { 3528965ea79SLois Curfman McInnes idx = rows[i]; 35335d8aa7fSBarry Smith found = PETSC_FALSE; 3548965ea79SLois Curfman McInnes for (j=0; j<size; j++) { 3558965ea79SLois Curfman McInnes if (idx >= owners[j] && idx < owners[j+1]) { 356c1dc657dSBarry Smith nprocs[2*j]++; nprocs[2*j+1] = 1; owner[i] = j; found = PETSC_TRUE; break; 3578965ea79SLois Curfman McInnes } 3588965ea79SLois Curfman McInnes } 35929bbc08cSBarry Smith if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range"); 3608965ea79SLois Curfman McInnes } 361c1dc657dSBarry Smith nsends = 0; for (i=0; i<size; i++) { nsends += nprocs[2*i+1];} 3628965ea79SLois Curfman McInnes 3638965ea79SLois Curfman McInnes /* inform other processors of number of messages and max length*/ 364c1dc657dSBarry Smith ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr); 3658965ea79SLois Curfman McInnes 3668965ea79SLois Curfman McInnes /* post receives: */ 36713f74950SBarry Smith ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(PetscInt),&rvalues);CHKERRQ(ierr); 368b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 3698965ea79SLois Curfman McInnes for (i=0; i<nrecvs; i++) { 37013f74950SBarry Smith ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 3718965ea79SLois Curfman McInnes } 3728965ea79SLois Curfman McInnes 3738965ea79SLois Curfman McInnes /* do sends: 3748965ea79SLois Curfman McInnes 1) starts[i] gives the starting index in svalues for stuff going to 3758965ea79SLois Curfman McInnes the ith processor 3768965ea79SLois Curfman McInnes */ 37713f74950SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),&svalues);CHKERRQ(ierr); 378b0a32e0cSBarry Smith ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 37913f74950SBarry Smith ierr = PetscMalloc((size+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr); 3808965ea79SLois Curfman McInnes starts[0] = 0; 381c1dc657dSBarry Smith for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];} 3828965ea79SLois Curfman McInnes for (i=0; i<N; i++) { 3838965ea79SLois Curfman McInnes svalues[starts[owner[i]]++] = rows[i]; 3848965ea79SLois Curfman McInnes } 3858965ea79SLois Curfman McInnes 3868965ea79SLois Curfman McInnes starts[0] = 0; 387c1dc657dSBarry Smith for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];} 3888965ea79SLois Curfman McInnes count = 0; 3898965ea79SLois Curfman McInnes for (i=0; i<size; i++) { 390c1dc657dSBarry Smith if (nprocs[2*i+1]) { 39113f74950SBarry Smith ierr = MPI_Isend(svalues+starts[i],nprocs[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 3928965ea79SLois Curfman McInnes } 3938965ea79SLois Curfman McInnes } 394606d414cSSatish Balay ierr = PetscFree(starts);CHKERRQ(ierr); 3958965ea79SLois Curfman McInnes 3968965ea79SLois Curfman McInnes base = owners[rank]; 3978965ea79SLois Curfman McInnes 3988965ea79SLois Curfman McInnes /* wait on receives */ 39913f74950SBarry Smith ierr = PetscMalloc(2*(nrecvs+1)*sizeof(PetscInt),&lens);CHKERRQ(ierr); 4008965ea79SLois Curfman McInnes source = lens + nrecvs; 4018965ea79SLois Curfman McInnes count = nrecvs; slen = 0; 4028965ea79SLois Curfman McInnes while (count) { 403ca161407SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 4048965ea79SLois Curfman McInnes /* unpack receives into our local space */ 40513f74950SBarry Smith ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr); 4068965ea79SLois Curfman McInnes source[imdex] = recv_status.MPI_SOURCE; 4078965ea79SLois Curfman McInnes lens[imdex] = n; 4088965ea79SLois Curfman McInnes slen += n; 4098965ea79SLois Curfman McInnes count--; 4108965ea79SLois Curfman McInnes } 411606d414cSSatish Balay ierr = PetscFree(recv_waits);CHKERRQ(ierr); 4128965ea79SLois Curfman McInnes 4138965ea79SLois Curfman McInnes /* move the data into the send scatter */ 41413f74950SBarry Smith ierr = PetscMalloc((slen+1)*sizeof(PetscInt),&lrows);CHKERRQ(ierr); 4158965ea79SLois Curfman McInnes count = 0; 4168965ea79SLois Curfman McInnes for (i=0; i<nrecvs; i++) { 4178965ea79SLois Curfman McInnes values = rvalues + i*nmax; 4188965ea79SLois Curfman McInnes for (j=0; j<lens[i]; j++) { 4198965ea79SLois Curfman McInnes lrows[count++] = values[j] - base; 4208965ea79SLois Curfman McInnes } 4218965ea79SLois Curfman McInnes } 422606d414cSSatish Balay ierr = PetscFree(rvalues);CHKERRQ(ierr); 423606d414cSSatish Balay ierr = PetscFree(lens);CHKERRQ(ierr); 424606d414cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 425606d414cSSatish Balay ierr = PetscFree(nprocs);CHKERRQ(ierr); 4268965ea79SLois Curfman McInnes 4278965ea79SLois Curfman McInnes /* actually zap the local rows */ 428f4df32b1SMatthew Knepley ierr = MatZeroRows(l->A,slen,lrows,diag);CHKERRQ(ierr); 429606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 4308965ea79SLois Curfman McInnes 4318965ea79SLois Curfman McInnes /* wait on sends */ 4328965ea79SLois Curfman McInnes if (nsends) { 433b0a32e0cSBarry Smith ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 434ca161407SBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 435606d414cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 4368965ea79SLois Curfman McInnes } 437606d414cSSatish Balay ierr = PetscFree(send_waits);CHKERRQ(ierr); 438606d414cSSatish Balay ierr = PetscFree(svalues);CHKERRQ(ierr); 4398965ea79SLois Curfman McInnes 4403a40ed3dSBarry Smith PetscFunctionReturn(0); 4418965ea79SLois Curfman McInnes } 4428965ea79SLois Curfman McInnes 4434a2ae208SSatish Balay #undef __FUNCT__ 4444a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIDense" 445dfbe8321SBarry Smith PetscErrorCode MatMult_MPIDense(Mat mat,Vec xx,Vec yy) 4468965ea79SLois Curfman McInnes { 44739ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 448dfbe8321SBarry Smith PetscErrorCode ierr; 449c456f294SBarry Smith 4503a40ed3dSBarry Smith PetscFunctionBegin; 451ca9f406cSSatish Balay ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 452ca9f406cSSatish Balay ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 45344cd7ae7SLois Curfman McInnes ierr = MatMult_SeqDense(mdn->A,mdn->lvec,yy);CHKERRQ(ierr); 4543a40ed3dSBarry Smith PetscFunctionReturn(0); 4558965ea79SLois Curfman McInnes } 4568965ea79SLois Curfman McInnes 4574a2ae208SSatish Balay #undef __FUNCT__ 4584a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIDense" 459dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz) 4608965ea79SLois Curfman McInnes { 46139ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 462dfbe8321SBarry Smith PetscErrorCode ierr; 463c456f294SBarry Smith 4643a40ed3dSBarry Smith PetscFunctionBegin; 465ca9f406cSSatish Balay ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 466ca9f406cSSatish Balay ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 46744cd7ae7SLois Curfman McInnes ierr = MatMultAdd_SeqDense(mdn->A,mdn->lvec,yy,zz);CHKERRQ(ierr); 4683a40ed3dSBarry Smith PetscFunctionReturn(0); 4698965ea79SLois Curfman McInnes } 4708965ea79SLois Curfman McInnes 4714a2ae208SSatish Balay #undef __FUNCT__ 4724a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIDense" 473dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIDense(Mat A,Vec xx,Vec yy) 474096963f5SLois Curfman McInnes { 475096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 476dfbe8321SBarry Smith PetscErrorCode ierr; 47787828ca2SBarry Smith PetscScalar zero = 0.0; 478096963f5SLois Curfman McInnes 4793a40ed3dSBarry Smith PetscFunctionBegin; 4802dcb1b2aSMatthew Knepley ierr = VecSet(yy,zero);CHKERRQ(ierr); 4817c922b88SBarry Smith ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr); 482ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 483ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 4843a40ed3dSBarry Smith PetscFunctionReturn(0); 485096963f5SLois Curfman McInnes } 486096963f5SLois Curfman McInnes 4874a2ae208SSatish Balay #undef __FUNCT__ 4884a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIDense" 489dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz) 490096963f5SLois Curfman McInnes { 491096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 492dfbe8321SBarry Smith PetscErrorCode ierr; 493096963f5SLois Curfman McInnes 4943a40ed3dSBarry Smith PetscFunctionBegin; 4953501a2bdSLois Curfman McInnes ierr = VecCopy(yy,zz);CHKERRQ(ierr); 4967c922b88SBarry Smith ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr); 497ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 498ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 4993a40ed3dSBarry Smith PetscFunctionReturn(0); 500096963f5SLois Curfman McInnes } 501096963f5SLois Curfman McInnes 5024a2ae208SSatish Balay #undef __FUNCT__ 5034a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIDense" 504dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIDense(Mat A,Vec v) 5058965ea79SLois Curfman McInnes { 50639ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 507096963f5SLois Curfman McInnes Mat_SeqDense *aloc = (Mat_SeqDense*)a->A->data; 508dfbe8321SBarry Smith PetscErrorCode ierr; 509899cda47SBarry Smith PetscInt len,i,n,m = A->rmap.n,radd; 51087828ca2SBarry Smith PetscScalar *x,zero = 0.0; 511ed3cc1f0SBarry Smith 5123a40ed3dSBarry Smith PetscFunctionBegin; 5132dcb1b2aSMatthew Knepley ierr = VecSet(v,zero);CHKERRQ(ierr); 5141ebc52fbSHong Zhang ierr = VecGetArray(v,&x);CHKERRQ(ierr); 515096963f5SLois Curfman McInnes ierr = VecGetSize(v,&n);CHKERRQ(ierr); 516899cda47SBarry Smith if (n != A->rmap.N) SETERRQ(PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec"); 517899cda47SBarry Smith len = PetscMin(a->A->rmap.n,a->A->cmap.n); 518899cda47SBarry Smith radd = A->rmap.rstart*m; 51944cd7ae7SLois Curfman McInnes for (i=0; i<len; i++) { 520096963f5SLois Curfman McInnes x[i] = aloc->v[radd + i*m + i]; 521096963f5SLois Curfman McInnes } 5221ebc52fbSHong Zhang ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 5233a40ed3dSBarry Smith PetscFunctionReturn(0); 5248965ea79SLois Curfman McInnes } 5258965ea79SLois Curfman McInnes 5264a2ae208SSatish Balay #undef __FUNCT__ 5274a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIDense" 528dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIDense(Mat mat) 5298965ea79SLois Curfman McInnes { 5303501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 531dfbe8321SBarry Smith PetscErrorCode ierr; 53201b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK) 53301b82886SBarry Smith Mat_Plapack *lu=(Mat_Plapack*)(mat->spptr); 53401b82886SBarry Smith #endif 535ed3cc1f0SBarry Smith 5363a40ed3dSBarry Smith PetscFunctionBegin; 53794d884c6SBarry Smith 538aa482453SBarry Smith #if defined(PETSC_USE_LOG) 539899cda47SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D, Cols=%D",mat->rmap.N,mat->cmap.N); 5408965ea79SLois Curfman McInnes #endif 5418798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 5423501a2bdSLois Curfman McInnes ierr = MatDestroy(mdn->A);CHKERRQ(ierr); 54305b42c5fSBarry Smith if (mdn->lvec) {ierr = VecDestroy(mdn->lvec);CHKERRQ(ierr);} 54405b42c5fSBarry Smith if (mdn->Mvctx) {ierr = VecScatterDestroy(mdn->Mvctx);CHKERRQ(ierr);} 54501b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK) 5462fbe02b9SBarry Smith if (lu) { 54762b4c0b3SBarry Smith ierr = PLA_Obj_free(&lu->A);CHKERRQ(ierr); 54862b4c0b3SBarry Smith ierr = PLA_Obj_free (&lu->pivots);CHKERRQ(ierr); 54962b4c0b3SBarry Smith ierr = PLA_Temp_free(&lu->templ);CHKERRQ(ierr); 55009d27a7eSBarry Smith 5512fbe02b9SBarry Smith if (lu->is_pla) { 55201b82886SBarry Smith ierr = ISDestroy(lu->is_pla);CHKERRQ(ierr); 55301b82886SBarry Smith ierr = ISDestroy(lu->is_petsc);CHKERRQ(ierr); 55401b82886SBarry Smith ierr = VecScatterDestroy(lu->ctx);CHKERRQ(ierr); 555622d7880SLois Curfman McInnes } 5562fbe02b9SBarry Smith } 55701b82886SBarry Smith #endif 55801b82886SBarry Smith 559606d414cSSatish Balay ierr = PetscFree(mdn);CHKERRQ(ierr); 560dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 561901853e0SKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 562901853e0SKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMPIDenseSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 5634ae313f4SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMult_mpiaij_mpidense_C","",PETSC_NULL);CHKERRQ(ierr); 5644ae313f4SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C","",PETSC_NULL);CHKERRQ(ierr); 5654ae313f4SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C","",PETSC_NULL);CHKERRQ(ierr); 5663a40ed3dSBarry Smith PetscFunctionReturn(0); 5678965ea79SLois Curfman McInnes } 56839ddd567SLois Curfman McInnes 5694a2ae208SSatish Balay #undef __FUNCT__ 5704a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense_Binary" 5716849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_Binary(Mat mat,PetscViewer viewer) 5728965ea79SLois Curfman McInnes { 57339ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 574dfbe8321SBarry Smith PetscErrorCode ierr; 575aa05aa95SBarry Smith PetscViewerFormat format; 576aa05aa95SBarry Smith int fd; 577aa05aa95SBarry Smith PetscInt header[4],mmax,N = mat->cmap.N,i,j,m,k; 578aa05aa95SBarry Smith PetscMPIInt rank,tag = ((PetscObject)viewer)->tag,size; 579578230a0SSatish Balay PetscScalar *work,*v,*vv; 580aa05aa95SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)mdn->A->data; 581aa05aa95SBarry Smith MPI_Status status; 5827056b6fcSBarry Smith 5833a40ed3dSBarry Smith PetscFunctionBegin; 58439ddd567SLois Curfman McInnes if (mdn->size == 1) { 58539ddd567SLois Curfman McInnes ierr = MatView(mdn->A,viewer);CHKERRQ(ierr); 586aa05aa95SBarry Smith } else { 587aa05aa95SBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 5887adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr); 5897adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)mat)->comm,&size);CHKERRQ(ierr); 590aa05aa95SBarry Smith 591aa05aa95SBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 592aa05aa95SBarry Smith if (format == PETSC_VIEWER_BINARY_NATIVE) { 593aa05aa95SBarry Smith 594aa05aa95SBarry Smith if (!rank) { 595aa05aa95SBarry Smith /* store the matrix as a dense matrix */ 596aa05aa95SBarry Smith header[0] = MAT_FILE_COOKIE; 597aa05aa95SBarry Smith header[1] = mat->rmap.N; 598aa05aa95SBarry Smith header[2] = N; 599aa05aa95SBarry Smith header[3] = MATRIX_BINARY_FORMAT_DENSE; 600aa05aa95SBarry Smith ierr = PetscBinaryWrite(fd,header,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 601aa05aa95SBarry Smith 602aa05aa95SBarry Smith /* get largest work array needed for transposing array */ 603aa05aa95SBarry Smith mmax = mat->rmap.n; 604aa05aa95SBarry Smith for (i=1; i<size; i++) { 605aa05aa95SBarry Smith mmax = PetscMax(mmax,mat->rmap.range[i+1] - mat->rmap.range[i]); 6068965ea79SLois Curfman McInnes } 607aa05aa95SBarry Smith ierr = PetscMalloc(mmax*N*sizeof(PetscScalar),&work);CHKERRQ(ierr); 608aa05aa95SBarry Smith 609aa05aa95SBarry Smith /* write out local array, by rows */ 610aa05aa95SBarry Smith m = mat->rmap.n; 611aa05aa95SBarry Smith v = a->v; 612aa05aa95SBarry Smith for (j=0; j<N; j++) { 613aa05aa95SBarry Smith for (i=0; i<m; i++) { 614578230a0SSatish Balay work[j + i*N] = *v++; 615aa05aa95SBarry Smith } 616aa05aa95SBarry Smith } 617aa05aa95SBarry Smith ierr = PetscBinaryWrite(fd,work,m*N,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr); 618aa05aa95SBarry Smith /* get largest work array to receive messages from other processes, excludes process zero */ 619aa05aa95SBarry Smith mmax = 0; 620aa05aa95SBarry Smith for (i=1; i<size; i++) { 621aa05aa95SBarry Smith mmax = PetscMax(mmax,mat->rmap.range[i+1] - mat->rmap.range[i]); 622aa05aa95SBarry Smith } 623578230a0SSatish Balay ierr = PetscMalloc(mmax*N*sizeof(PetscScalar),&vv);CHKERRQ(ierr); 624578230a0SSatish Balay v = vv; 625aa05aa95SBarry Smith for (k=1; k<size; k++) { 626aa05aa95SBarry Smith m = mat->rmap.range[k+1] - mat->rmap.range[k]; 6277adad957SLisandro Dalcin ierr = MPI_Recv(v,m*N,MPIU_SCALAR,k,tag,((PetscObject)mat)->comm,&status);CHKERRQ(ierr); 628aa05aa95SBarry Smith 629aa05aa95SBarry Smith for (j=0; j<N; j++) { 630aa05aa95SBarry Smith for (i=0; i<m; i++) { 631578230a0SSatish Balay work[j + i*N] = *v++; 632aa05aa95SBarry Smith } 633aa05aa95SBarry Smith } 634aa05aa95SBarry Smith ierr = PetscBinaryWrite(fd,work,m*N,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr); 635aa05aa95SBarry Smith } 636aa05aa95SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 637578230a0SSatish Balay ierr = PetscFree(vv);CHKERRQ(ierr); 638aa05aa95SBarry Smith } else { 6397adad957SLisandro Dalcin ierr = MPI_Send(a->v,mat->rmap.n*mat->cmap.N,MPIU_SCALAR,0,tag,((PetscObject)mat)->comm);CHKERRQ(ierr); 640aa05aa95SBarry Smith } 641*4aa34b0aSBarry Smith } else { 642*4aa34b0aSBarry Smith SETERRQ(PETSC_ERR_SUP,"To store a parallel dense matrix you must first call PetscViewerSetFormat(viewer,PETSC_VIEWER_BINARY_NATIVE,...);"); 643aa05aa95SBarry Smith } 644aa05aa95SBarry Smith } 6453a40ed3dSBarry Smith PetscFunctionReturn(0); 6468965ea79SLois Curfman McInnes } 6478965ea79SLois Curfman McInnes 6484a2ae208SSatish Balay #undef __FUNCT__ 6494a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense_ASCIIorDraworSocket" 6506849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 6518965ea79SLois Curfman McInnes { 65239ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 653dfbe8321SBarry Smith PetscErrorCode ierr; 65432dcc486SBarry Smith PetscMPIInt size = mdn->size,rank = mdn->rank; 655b0a32e0cSBarry Smith PetscViewerType vtype; 65632077d6dSBarry Smith PetscTruth iascii,isdraw; 657b0a32e0cSBarry Smith PetscViewer sviewer; 658f3ef73ceSBarry Smith PetscViewerFormat format; 65901b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK) 66001b82886SBarry Smith Mat_Plapack *lu=(Mat_Plapack*)(mat->spptr); 66101b82886SBarry Smith #endif 6628965ea79SLois Curfman McInnes 6633a40ed3dSBarry Smith PetscFunctionBegin; 66432077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 665fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 66632077d6dSBarry Smith if (iascii) { 667b0a32e0cSBarry Smith ierr = PetscViewerGetType(viewer,&vtype);CHKERRQ(ierr); 668b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 669456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 6704e220ebcSLois Curfman McInnes MatInfo info; 671888f2ed8SSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 672899cda47SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer," [%d] local rows %D nz %D nz alloced %D mem %D \n",rank,mat->rmap.n, 67377431f27SBarry Smith (PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory);CHKERRQ(ierr); 674b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 6753501a2bdSLois Curfman McInnes ierr = VecScatterView(mdn->Mvctx,viewer);CHKERRQ(ierr); 67601b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK) 67701b82886SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"PLAPACK run parameters:\n");CHKERRQ(ierr); 67804fea9ffSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," Processor mesh: nprows %d, npcols %d\n",Plapack_nprows, Plapack_npcols);CHKERRQ(ierr); 67901b82886SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," Distr. block size nb: %d \n",lu->nb);CHKERRQ(ierr); 680eae6fb2eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," Error checking: %d\n",Plapack_ierror);CHKERRQ(ierr); 681eae6fb2eSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," Algorithmic block size: %d\n",Plapack_nb_alg);CHKERRQ(ierr); 68201b82886SBarry Smith #endif 6833a40ed3dSBarry Smith PetscFunctionReturn(0); 684fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 6853a40ed3dSBarry Smith PetscFunctionReturn(0); 6868965ea79SLois Curfman McInnes } 687f1af5d2fSBarry Smith } else if (isdraw) { 688b0a32e0cSBarry Smith PetscDraw draw; 689f1af5d2fSBarry Smith PetscTruth isnull; 690f1af5d2fSBarry Smith 691b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 692b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 693f1af5d2fSBarry Smith if (isnull) PetscFunctionReturn(0); 694f1af5d2fSBarry Smith } 69577ed5343SBarry Smith 6968965ea79SLois Curfman McInnes if (size == 1) { 69739ddd567SLois Curfman McInnes ierr = MatView(mdn->A,viewer);CHKERRQ(ierr); 6983a40ed3dSBarry Smith } else { 6998965ea79SLois Curfman McInnes /* assemble the entire matrix onto first processor. */ 7008965ea79SLois Curfman McInnes Mat A; 701899cda47SBarry Smith PetscInt M = mat->rmap.N,N = mat->cmap.N,m,row,i,nz; 702ba8c8a56SBarry Smith PetscInt *cols; 703ba8c8a56SBarry Smith PetscScalar *vals; 7048965ea79SLois Curfman McInnes 7057adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr); 7068965ea79SLois Curfman McInnes if (!rank) { 707f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 7083a40ed3dSBarry Smith } else { 709f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 7108965ea79SLois Curfman McInnes } 7117adad957SLisandro Dalcin /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */ 712878740d9SKris Buschelman ierr = MatSetType(A,MATMPIDENSE);CHKERRQ(ierr); 713878740d9SKris Buschelman ierr = MatMPIDenseSetPreallocation(A,PETSC_NULL); 71452e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr); 7158965ea79SLois Curfman McInnes 71639ddd567SLois Curfman McInnes /* Copy the matrix ... This isn't the most efficient means, 71739ddd567SLois Curfman McInnes but it's quick for now */ 71851022da4SBarry Smith A->insertmode = INSERT_VALUES; 719899cda47SBarry Smith row = mat->rmap.rstart; m = mdn->A->rmap.n; 7208965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 721ba8c8a56SBarry Smith ierr = MatGetRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 722ba8c8a56SBarry Smith ierr = MatSetValues_MPIDense(A,1,&row,nz,cols,vals,INSERT_VALUES);CHKERRQ(ierr); 723ba8c8a56SBarry Smith ierr = MatRestoreRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 72439ddd567SLois Curfman McInnes row++; 7258965ea79SLois Curfman McInnes } 7268965ea79SLois Curfman McInnes 7276d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 7286d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 729b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 730b9b97703SBarry Smith if (!rank) { 7316831982aSBarry Smith ierr = MatView(((Mat_MPIDense*)(A->data))->A,sviewer);CHKERRQ(ierr); 7328965ea79SLois Curfman McInnes } 733b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 734b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 7358965ea79SLois Curfman McInnes ierr = MatDestroy(A);CHKERRQ(ierr); 7368965ea79SLois Curfman McInnes } 7373a40ed3dSBarry Smith PetscFunctionReturn(0); 7388965ea79SLois Curfman McInnes } 7398965ea79SLois Curfman McInnes 7404a2ae208SSatish Balay #undef __FUNCT__ 7414a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense" 742dfbe8321SBarry Smith PetscErrorCode MatView_MPIDense(Mat mat,PetscViewer viewer) 7438965ea79SLois Curfman McInnes { 744dfbe8321SBarry Smith PetscErrorCode ierr; 74532077d6dSBarry Smith PetscTruth iascii,isbinary,isdraw,issocket; 7468965ea79SLois Curfman McInnes 747433994e6SBarry Smith PetscFunctionBegin; 7480f5bd95cSBarry Smith 74932077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 750fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 751b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 752fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 7530f5bd95cSBarry Smith 75432077d6dSBarry Smith if (iascii || issocket || isdraw) { 755f1af5d2fSBarry Smith ierr = MatView_MPIDense_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 7560f5bd95cSBarry Smith } else if (isbinary) { 7573a40ed3dSBarry Smith ierr = MatView_MPIDense_Binary(mat,viewer);CHKERRQ(ierr); 7585cd90555SBarry Smith } else { 759958c9bccSBarry Smith SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPI dense matrix",((PetscObject)viewer)->type_name); 7608965ea79SLois Curfman McInnes } 7613a40ed3dSBarry Smith PetscFunctionReturn(0); 7628965ea79SLois Curfman McInnes } 7638965ea79SLois Curfman McInnes 7644a2ae208SSatish Balay #undef __FUNCT__ 7654a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIDense" 766dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info) 7678965ea79SLois Curfman McInnes { 7683501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 7693501a2bdSLois Curfman McInnes Mat mdn = mat->A; 770dfbe8321SBarry Smith PetscErrorCode ierr; 771329f5518SBarry Smith PetscReal isend[5],irecv[5]; 7728965ea79SLois Curfman McInnes 7733a40ed3dSBarry Smith PetscFunctionBegin; 774899cda47SBarry Smith info->rows_global = (double)A->rmap.N; 775899cda47SBarry Smith info->columns_global = (double)A->cmap.N; 776899cda47SBarry Smith info->rows_local = (double)A->rmap.n; 777899cda47SBarry Smith info->columns_local = (double)A->cmap.N; 7784e220ebcSLois Curfman McInnes info->block_size = 1.0; 7794e220ebcSLois Curfman McInnes ierr = MatGetInfo(mdn,MAT_LOCAL,info);CHKERRQ(ierr); 7804e220ebcSLois Curfman McInnes isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 7814e220ebcSLois Curfman McInnes isend[3] = info->memory; isend[4] = info->mallocs; 7828965ea79SLois Curfman McInnes if (flag == MAT_LOCAL) { 7834e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 7844e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 7854e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 7864e220ebcSLois Curfman McInnes info->memory = isend[3]; 7874e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 7888965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 7897adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,((PetscObject)A)->comm);CHKERRQ(ierr); 7904e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7914e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7924e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7934e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7944e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7958965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 7967adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,((PetscObject)A)->comm);CHKERRQ(ierr); 7974e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7984e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7994e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 8004e220ebcSLois Curfman McInnes info->memory = irecv[3]; 8014e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 8028965ea79SLois Curfman McInnes } 8034e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 8044e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 8054e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 8063a40ed3dSBarry Smith PetscFunctionReturn(0); 8078965ea79SLois Curfman McInnes } 8088965ea79SLois Curfman McInnes 8094a2ae208SSatish Balay #undef __FUNCT__ 8104a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIDense" 8114e0d8c25SBarry Smith PetscErrorCode MatSetOption_MPIDense(Mat A,MatOption op,PetscTruth flg) 8128965ea79SLois Curfman McInnes { 81339ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 814dfbe8321SBarry Smith PetscErrorCode ierr; 8158965ea79SLois Curfman McInnes 8163a40ed3dSBarry Smith PetscFunctionBegin; 81712c028f9SKris Buschelman switch (op) { 818512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 81912c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 82012c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 8214e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 82212c028f9SKris Buschelman break; 82312c028f9SKris Buschelman case MAT_ROW_ORIENTED: 8244e0d8c25SBarry Smith a->roworiented = flg; 8254e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 82612c028f9SKris Buschelman break; 8274e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 82812c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 829290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 83012c028f9SKris Buschelman break; 83112c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 8324e0d8c25SBarry Smith a->donotstash = flg; 83312c028f9SKris Buschelman break; 83477e54ba9SKris Buschelman case MAT_SYMMETRIC: 83577e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 8369a4540c5SBarry Smith case MAT_HERMITIAN: 8379a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 838600fe468SBarry Smith case MAT_IGNORE_LOWER_TRIANGULAR: 839290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 84077e54ba9SKris Buschelman break; 84112c028f9SKris Buschelman default: 842600fe468SBarry Smith SETERRQ1(PETSC_ERR_SUP,"unknown option %s",MatOptions[op]); 8433a40ed3dSBarry Smith } 8443a40ed3dSBarry Smith PetscFunctionReturn(0); 8458965ea79SLois Curfman McInnes } 8468965ea79SLois Curfman McInnes 8478965ea79SLois Curfman McInnes 8484a2ae208SSatish Balay #undef __FUNCT__ 8494a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIDense" 850dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIDense(Mat A,Vec ll,Vec rr) 8515b2fa520SLois Curfman McInnes { 8525b2fa520SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 8535b2fa520SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)mdn->A->data; 85487828ca2SBarry Smith PetscScalar *l,*r,x,*v; 855dfbe8321SBarry Smith PetscErrorCode ierr; 856899cda47SBarry Smith PetscInt i,j,s2a,s3a,s2,s3,m=mdn->A->rmap.n,n=mdn->A->cmap.n; 8575b2fa520SLois Curfman McInnes 8585b2fa520SLois Curfman McInnes PetscFunctionBegin; 85972d926a5SLois Curfman McInnes ierr = MatGetLocalSize(A,&s2,&s3);CHKERRQ(ierr); 8605b2fa520SLois Curfman McInnes if (ll) { 86172d926a5SLois Curfman McInnes ierr = VecGetLocalSize(ll,&s2a);CHKERRQ(ierr); 862175be7b4SMatthew Knepley if (s2a != s2) SETERRQ2(PETSC_ERR_ARG_SIZ,"Left scaling vector non-conforming local size, %d != %d.", s2a, s2); 8631ebc52fbSHong Zhang ierr = VecGetArray(ll,&l);CHKERRQ(ierr); 8645b2fa520SLois Curfman McInnes for (i=0; i<m; i++) { 8655b2fa520SLois Curfman McInnes x = l[i]; 8665b2fa520SLois Curfman McInnes v = mat->v + i; 8675b2fa520SLois Curfman McInnes for (j=0; j<n; j++) { (*v) *= x; v+= m;} 8685b2fa520SLois Curfman McInnes } 8691ebc52fbSHong Zhang ierr = VecRestoreArray(ll,&l);CHKERRQ(ierr); 870efee365bSSatish Balay ierr = PetscLogFlops(n*m);CHKERRQ(ierr); 8715b2fa520SLois Curfman McInnes } 8725b2fa520SLois Curfman McInnes if (rr) { 873175be7b4SMatthew Knepley ierr = VecGetLocalSize(rr,&s3a);CHKERRQ(ierr); 874175be7b4SMatthew Knepley if (s3a != s3) SETERRQ2(PETSC_ERR_ARG_SIZ,"Right scaling vec non-conforming local size, %d != %d.", s3a, s3); 875ca9f406cSSatish Balay ierr = VecScatterBegin(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 876ca9f406cSSatish Balay ierr = VecScatterEnd(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 8771ebc52fbSHong Zhang ierr = VecGetArray(mdn->lvec,&r);CHKERRQ(ierr); 8785b2fa520SLois Curfman McInnes for (i=0; i<n; i++) { 8795b2fa520SLois Curfman McInnes x = r[i]; 8805b2fa520SLois Curfman McInnes v = mat->v + i*m; 8815b2fa520SLois Curfman McInnes for (j=0; j<m; j++) { (*v++) *= x;} 8825b2fa520SLois Curfman McInnes } 8831ebc52fbSHong Zhang ierr = VecRestoreArray(mdn->lvec,&r);CHKERRQ(ierr); 884efee365bSSatish Balay ierr = PetscLogFlops(n*m);CHKERRQ(ierr); 8855b2fa520SLois Curfman McInnes } 8865b2fa520SLois Curfman McInnes PetscFunctionReturn(0); 8875b2fa520SLois Curfman McInnes } 8885b2fa520SLois Curfman McInnes 8894a2ae208SSatish Balay #undef __FUNCT__ 8904a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIDense" 891dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIDense(Mat A,NormType type,PetscReal *nrm) 892096963f5SLois Curfman McInnes { 8933501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 8943501a2bdSLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)mdn->A->data; 895dfbe8321SBarry Smith PetscErrorCode ierr; 89613f74950SBarry Smith PetscInt i,j; 897329f5518SBarry Smith PetscReal sum = 0.0; 89887828ca2SBarry Smith PetscScalar *v = mat->v; 8993501a2bdSLois Curfman McInnes 9003a40ed3dSBarry Smith PetscFunctionBegin; 9013501a2bdSLois Curfman McInnes if (mdn->size == 1) { 902064f8208SBarry Smith ierr = MatNorm(mdn->A,type,nrm);CHKERRQ(ierr); 9033501a2bdSLois Curfman McInnes } else { 9043501a2bdSLois Curfman McInnes if (type == NORM_FROBENIUS) { 905899cda47SBarry Smith for (i=0; i<mdn->A->cmap.n*mdn->A->rmap.n; i++) { 906aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 907329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 9083501a2bdSLois Curfman McInnes #else 9093501a2bdSLois Curfman McInnes sum += (*v)*(*v); v++; 9103501a2bdSLois Curfman McInnes #endif 9113501a2bdSLois Curfman McInnes } 9127adad957SLisandro Dalcin ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_SUM,((PetscObject)A)->comm);CHKERRQ(ierr); 913064f8208SBarry Smith *nrm = sqrt(*nrm); 914899cda47SBarry Smith ierr = PetscLogFlops(2*mdn->A->cmap.n*mdn->A->rmap.n);CHKERRQ(ierr); 9153a40ed3dSBarry Smith } else if (type == NORM_1) { 916329f5518SBarry Smith PetscReal *tmp,*tmp2; 917899cda47SBarry Smith ierr = PetscMalloc(2*A->cmap.N*sizeof(PetscReal),&tmp);CHKERRQ(ierr); 918899cda47SBarry Smith tmp2 = tmp + A->cmap.N; 919899cda47SBarry Smith ierr = PetscMemzero(tmp,2*A->cmap.N*sizeof(PetscReal));CHKERRQ(ierr); 920064f8208SBarry Smith *nrm = 0.0; 9213501a2bdSLois Curfman McInnes v = mat->v; 922899cda47SBarry Smith for (j=0; j<mdn->A->cmap.n; j++) { 923899cda47SBarry Smith for (i=0; i<mdn->A->rmap.n; i++) { 92467e560aaSBarry Smith tmp[j] += PetscAbsScalar(*v); v++; 9253501a2bdSLois Curfman McInnes } 9263501a2bdSLois Curfman McInnes } 9277adad957SLisandro Dalcin ierr = MPI_Allreduce(tmp,tmp2,A->cmap.N,MPIU_REAL,MPI_SUM,((PetscObject)A)->comm);CHKERRQ(ierr); 928899cda47SBarry Smith for (j=0; j<A->cmap.N; j++) { 929064f8208SBarry Smith if (tmp2[j] > *nrm) *nrm = tmp2[j]; 9303501a2bdSLois Curfman McInnes } 931606d414cSSatish Balay ierr = PetscFree(tmp);CHKERRQ(ierr); 932899cda47SBarry Smith ierr = PetscLogFlops(A->cmap.n*A->rmap.n);CHKERRQ(ierr); 9333a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 934329f5518SBarry Smith PetscReal ntemp; 9353501a2bdSLois Curfman McInnes ierr = MatNorm(mdn->A,type,&ntemp);CHKERRQ(ierr); 9367adad957SLisandro Dalcin ierr = MPI_Allreduce(&ntemp,nrm,1,MPIU_REAL,MPI_MAX,((PetscObject)A)->comm);CHKERRQ(ierr); 9373a40ed3dSBarry Smith } else { 93829bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for two norm"); 9393501a2bdSLois Curfman McInnes } 9403501a2bdSLois Curfman McInnes } 9413a40ed3dSBarry Smith PetscFunctionReturn(0); 9423501a2bdSLois Curfman McInnes } 9433501a2bdSLois Curfman McInnes 9444a2ae208SSatish Balay #undef __FUNCT__ 9454a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPIDense" 946fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIDense(Mat A,MatReuse reuse,Mat *matout) 9473501a2bdSLois Curfman McInnes { 9483501a2bdSLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 9493501a2bdSLois Curfman McInnes Mat_SeqDense *Aloc = (Mat_SeqDense*)a->A->data; 9503501a2bdSLois Curfman McInnes Mat B; 951899cda47SBarry Smith PetscInt M = A->rmap.N,N = A->cmap.N,m,n,*rwork,rstart = A->rmap.rstart; 9526849ba73SBarry Smith PetscErrorCode ierr; 95313f74950SBarry Smith PetscInt j,i; 95487828ca2SBarry Smith PetscScalar *v; 9553501a2bdSLois Curfman McInnes 9563a40ed3dSBarry Smith PetscFunctionBegin; 957e9695a30SBarry Smith if (reuse == MAT_REUSE_MATRIX && A == *matout && M != N) SETERRQ(PETSC_ERR_SUP,"Supports square matrix only in-place"); 958fc4dec0aSBarry Smith if (reuse == MAT_INITIAL_MATRIX || A == *matout) { 9597adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)A)->comm,&B);CHKERRQ(ierr); 960f69a0ea3SMatthew Knepley ierr = MatSetSizes(B,PETSC_DECIDE,PETSC_DECIDE,N,M);CHKERRQ(ierr); 9617adad957SLisandro Dalcin ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr); 962878740d9SKris Buschelman ierr = MatMPIDenseSetPreallocation(B,PETSC_NULL);CHKERRQ(ierr); 963fc4dec0aSBarry Smith } else { 964fc4dec0aSBarry Smith B = *matout; 965fc4dec0aSBarry Smith } 9663501a2bdSLois Curfman McInnes 967899cda47SBarry Smith m = a->A->rmap.n; n = a->A->cmap.n; v = Aloc->v; 9681acff37aSSatish Balay ierr = PetscMalloc(m*sizeof(PetscInt),&rwork);CHKERRQ(ierr); 9693501a2bdSLois Curfman McInnes for (i=0; i<m; i++) rwork[i] = rstart + i; 9701acff37aSSatish Balay for (j=0; j<n; j++) { 9713501a2bdSLois Curfman McInnes ierr = MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES);CHKERRQ(ierr); 9723501a2bdSLois Curfman McInnes v += m; 9733501a2bdSLois Curfman McInnes } 974606d414cSSatish Balay ierr = PetscFree(rwork);CHKERRQ(ierr); 9756d4a8577SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 9766d4a8577SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 977815cbec1SBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout != A) { 9783501a2bdSLois Curfman McInnes *matout = B; 9793501a2bdSLois Curfman McInnes } else { 980273d9f13SBarry Smith ierr = MatHeaderCopy(A,B);CHKERRQ(ierr); 9813501a2bdSLois Curfman McInnes } 9823a40ed3dSBarry Smith PetscFunctionReturn(0); 983096963f5SLois Curfman McInnes } 984096963f5SLois Curfman McInnes 985d9eff348SSatish Balay #include "petscblaslapack.h" 9864a2ae208SSatish Balay #undef __FUNCT__ 9874a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIDense" 988f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIDense(Mat inA,PetscScalar alpha) 98944cd7ae7SLois Curfman McInnes { 99044cd7ae7SLois Curfman McInnes Mat_MPIDense *A = (Mat_MPIDense*)inA->data; 99144cd7ae7SLois Curfman McInnes Mat_SeqDense *a = (Mat_SeqDense*)A->A->data; 992f4df32b1SMatthew Knepley PetscScalar oalpha = alpha; 993efee365bSSatish Balay PetscErrorCode ierr; 9940805154bSBarry Smith PetscBLASInt one = 1,nz = PetscBLASIntCast(inA->rmap.n*inA->cmap.N); 99544cd7ae7SLois Curfman McInnes 9963a40ed3dSBarry Smith PetscFunctionBegin; 997f4df32b1SMatthew Knepley BLASscal_(&nz,&oalpha,a->v,&one); 998efee365bSSatish Balay ierr = PetscLogFlops(nz);CHKERRQ(ierr); 9993a40ed3dSBarry Smith PetscFunctionReturn(0); 100044cd7ae7SLois Curfman McInnes } 100144cd7ae7SLois Curfman McInnes 10026849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat *); 10038965ea79SLois Curfman McInnes 10044a2ae208SSatish Balay #undef __FUNCT__ 10054a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPIDense" 1006dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPIDense(Mat A) 1007273d9f13SBarry Smith { 1008dfbe8321SBarry Smith PetscErrorCode ierr; 1009273d9f13SBarry Smith 1010273d9f13SBarry Smith PetscFunctionBegin; 1011273d9f13SBarry Smith ierr = MatMPIDenseSetPreallocation(A,0);CHKERRQ(ierr); 1012273d9f13SBarry Smith PetscFunctionReturn(0); 1013273d9f13SBarry Smith } 1014273d9f13SBarry Smith 101501b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK) 1016eae6fb2eSBarry Smith 1017eae6fb2eSBarry Smith #undef __FUNCT__ 1018eae6fb2eSBarry Smith #define __FUNCT__ "MatMPIDenseCreatePlapack" 1019eae6fb2eSBarry Smith PetscErrorCode MatMPIDenseCreatePlapack(Mat A) 1020eae6fb2eSBarry Smith { 1021eae6fb2eSBarry Smith Mat_Plapack *lu; 1022eae6fb2eSBarry Smith PetscErrorCode ierr; 1023eae6fb2eSBarry Smith PetscInt M=A->rmap.N; 1024eae6fb2eSBarry Smith MPI_Comm comm=((PetscObject)A)->comm; 1025eae6fb2eSBarry Smith PetscMPIInt size; 1026eae6fb2eSBarry Smith 1027eae6fb2eSBarry Smith PetscFunctionBegin; 10282fbe02b9SBarry Smith if (A->spptr) PetscFunctionReturn(0); 10292fbe02b9SBarry Smith ierr = PetscNewLog(A,Mat_Plapack,&lu);CHKERRQ(ierr); 10302fbe02b9SBarry Smith A->spptr = (void*)lu; 10312fbe02b9SBarry Smith 1032eae6fb2eSBarry Smith lu = (Mat_Plapack*)(A->spptr); 1033eae6fb2eSBarry Smith 1034eae6fb2eSBarry Smith /* Set default Plapack parameters */ 1035eae6fb2eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1036eae6fb2eSBarry Smith lu->nb = M/size; 1037eae6fb2eSBarry Smith if (M - lu->nb*size) lu->nb++; /* without cyclic distribution */ 1038eae6fb2eSBarry Smith 1039eae6fb2eSBarry Smith /* Set runtime options */ 1040eae6fb2eSBarry Smith ierr = PetscOptionsBegin(((PetscObject)A)->comm,((PetscObject)A)->prefix,"PLAPACK Options","Mat");CHKERRQ(ierr); 1041eae6fb2eSBarry Smith ierr = PetscOptionsInt("-mat_plapack_nb","block size of template vector","None",lu->nb,&lu->nb,PETSC_NULL);CHKERRQ(ierr); 1042eae6fb2eSBarry Smith PetscOptionsEnd(); 1043eae6fb2eSBarry Smith 1044eae6fb2eSBarry Smith /* Create object distribution template */ 1045eae6fb2eSBarry Smith lu->templ = NULL; 1046eae6fb2eSBarry Smith ierr = PLA_Temp_create(lu->nb, 0, &lu->templ);CHKERRQ(ierr); 1047eae6fb2eSBarry Smith 1048eae6fb2eSBarry Smith /* Set the datatype */ 1049eae6fb2eSBarry Smith #if defined(PETSC_USE_COMPLEX) 1050eae6fb2eSBarry Smith lu->datatype = MPI_DOUBLE_COMPLEX; 1051eae6fb2eSBarry Smith #else 1052eae6fb2eSBarry Smith lu->datatype = MPI_DOUBLE; 1053eae6fb2eSBarry Smith #endif 1054eae6fb2eSBarry Smith 105579b0a62dSBarry Smith ierr = PLA_Matrix_create(lu->datatype,M,A->cmap.N,lu->templ,PLA_ALIGN_FIRST,PLA_ALIGN_FIRST,&lu->A);CHKERRQ(ierr); 105679b0a62dSBarry Smith 1057eae6fb2eSBarry Smith 1058eae6fb2eSBarry Smith lu->pla_solved = PETSC_FALSE; /* MatSolve_Plapack() is called yet */ 1059eae6fb2eSBarry Smith PetscFunctionReturn(0); 1060eae6fb2eSBarry Smith } 1061eae6fb2eSBarry Smith 1062eae6fb2eSBarry Smith #undef __FUNCT__ 1063eae6fb2eSBarry Smith #define __FUNCT__ "MatMPIDenseCopyToPlapack" 1064eae6fb2eSBarry Smith PetscErrorCode MatMPIDenseCopyToPlapack(Mat A,Mat F) 1065eae6fb2eSBarry Smith { 1066eae6fb2eSBarry Smith Mat_Plapack *lu = (Mat_Plapack*)(F)->spptr; 1067eae6fb2eSBarry Smith PetscErrorCode ierr; 106879b0a62dSBarry Smith PetscInt M=A->cmap.N,m=A->rmap.n,rstart; 1069eae6fb2eSBarry Smith PetscScalar *array; 1070eae6fb2eSBarry Smith PetscReal one = 1.0; 1071eae6fb2eSBarry Smith 1072eae6fb2eSBarry Smith PetscFunctionBegin; 10732fbe02b9SBarry Smith /* Copy A into F->lu->A */ 1074eae6fb2eSBarry Smith ierr = PLA_Obj_set_to_zero(lu->A);CHKERRQ(ierr); 1075eae6fb2eSBarry Smith ierr = PLA_API_begin();CHKERRQ(ierr); 1076eae6fb2eSBarry Smith ierr = PLA_Obj_API_open(lu->A);CHKERRQ(ierr); 107779b0a62dSBarry Smith ierr = MatGetOwnershipRange(A,&rstart,PETSC_NULL);CHKERRQ(ierr); 1078eae6fb2eSBarry Smith ierr = MatGetArray(A,&array);CHKERRQ(ierr); 1079eae6fb2eSBarry Smith ierr = PLA_API_axpy_matrix_to_global(m,M, &one,(void *)array,m,lu->A,rstart,0);CHKERRQ(ierr); 1080eae6fb2eSBarry Smith ierr = MatRestoreArray(A,&array);CHKERRQ(ierr); 1081eae6fb2eSBarry Smith ierr = PLA_Obj_API_close(lu->A);CHKERRQ(ierr); 1082eae6fb2eSBarry Smith ierr = PLA_API_end();CHKERRQ(ierr); 1083eae6fb2eSBarry Smith lu->rstart = rstart; 1084eae6fb2eSBarry Smith PetscFunctionReturn(0); 1085eae6fb2eSBarry Smith } 1086eae6fb2eSBarry Smith 108701b82886SBarry Smith #undef __FUNCT__ 10882fbe02b9SBarry Smith #define __FUNCT__ "MatMPIDenseCopyFromPlapack" 10892fbe02b9SBarry Smith PetscErrorCode MatMPIDenseCopyFromPlapack(Mat F,Mat A) 10902fbe02b9SBarry Smith { 10912fbe02b9SBarry Smith Mat_Plapack *lu = (Mat_Plapack*)(F)->spptr; 10922fbe02b9SBarry Smith PetscErrorCode ierr; 109379b0a62dSBarry Smith PetscInt M=A->cmap.N,m=A->rmap.n,rstart; 10942fbe02b9SBarry Smith PetscScalar *array; 10952fbe02b9SBarry Smith PetscReal one = 1.0; 10962fbe02b9SBarry Smith 10972fbe02b9SBarry Smith PetscFunctionBegin; 10982fbe02b9SBarry Smith /* Copy F into A->lu->A */ 109979b0a62dSBarry Smith ierr = MatZeroEntries(A);CHKERRQ(ierr); 11002fbe02b9SBarry Smith ierr = PLA_API_begin();CHKERRQ(ierr); 11012fbe02b9SBarry Smith ierr = PLA_Obj_API_open(lu->A);CHKERRQ(ierr); 11022fbe02b9SBarry Smith ierr = MatGetOwnershipRange(A,&rstart,PETSC_NULL);CHKERRQ(ierr); 11032fbe02b9SBarry Smith ierr = MatGetArray(A,&array);CHKERRQ(ierr); 11042fbe02b9SBarry Smith ierr = PLA_API_axpy_global_to_matrix(m,M, &one,lu->A,rstart,0,(void *)array,m);CHKERRQ(ierr); 11052fbe02b9SBarry Smith ierr = MatRestoreArray(A,&array);CHKERRQ(ierr); 11062fbe02b9SBarry Smith ierr = PLA_Obj_API_close(lu->A);CHKERRQ(ierr); 11072fbe02b9SBarry Smith ierr = PLA_API_end();CHKERRQ(ierr); 11082fbe02b9SBarry Smith lu->rstart = rstart; 11092fbe02b9SBarry Smith PetscFunctionReturn(0); 11102fbe02b9SBarry Smith } 11112fbe02b9SBarry Smith 11122fbe02b9SBarry Smith #undef __FUNCT__ 11132fbe02b9SBarry Smith #define __FUNCT__ "MatMatMultNumeric_MPIDense_MPIDense" 11142fbe02b9SBarry Smith PetscErrorCode MatMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 11152fbe02b9SBarry Smith { 11162fbe02b9SBarry Smith PetscErrorCode ierr; 11172fbe02b9SBarry Smith Mat_Plapack *luA = (Mat_Plapack*)A->spptr; 11182fbe02b9SBarry Smith Mat_Plapack *luB = (Mat_Plapack*)B->spptr; 11192fbe02b9SBarry Smith Mat_Plapack *luC = (Mat_Plapack*)C->spptr; 11202fbe02b9SBarry Smith PLA_Obj alpha = NULL,beta = NULL; 11212fbe02b9SBarry Smith 11222fbe02b9SBarry Smith PetscFunctionBegin; 11232fbe02b9SBarry Smith ierr = MatMPIDenseCopyToPlapack(A,A);CHKERRQ(ierr); 11242fbe02b9SBarry Smith ierr = MatMPIDenseCopyToPlapack(B,B);CHKERRQ(ierr); 11252fbe02b9SBarry Smith 11266e6f9017SBarry Smith /* 1127cb2480eaSBarry Smith ierr = PLA_Global_show("A = ",luA->A,"%g ","");CHKERRQ(ierr); 1128cb2480eaSBarry Smith ierr = PLA_Global_show("B = ",luB->A,"%g ","");CHKERRQ(ierr); 11296e6f9017SBarry Smith */ 1130cb2480eaSBarry Smith 11312fbe02b9SBarry Smith /* do the multiply in PLA */ 113279b0a62dSBarry Smith ierr = PLA_Create_constants_conf_to(luA->A,NULL,NULL,&alpha);CHKERRQ(ierr); 113379b0a62dSBarry Smith ierr = PLA_Create_constants_conf_to(luC->A,NULL,&beta,NULL);CHKERRQ(ierr); 113479b0a62dSBarry Smith CHKMEMQ; 11352fbe02b9SBarry Smith 1136cb2480eaSBarry Smith ierr = PLA_Gemm(PLA_NO_TRANSPOSE,PLA_NO_TRANSPOSE,alpha,luA->A,luB->A,beta,luC->A);//CHKERRQ(ierr); 113779b0a62dSBarry Smith CHKMEMQ; 11382fbe02b9SBarry Smith ierr = PLA_Obj_free(&alpha);CHKERRQ(ierr); 11392fbe02b9SBarry Smith ierr = PLA_Obj_free(&beta);CHKERRQ(ierr); 11402fbe02b9SBarry Smith 11416e6f9017SBarry Smith /* 1142cb2480eaSBarry Smith ierr = PLA_Global_show("C = ",luC->A,"%g ","");CHKERRQ(ierr); 11436e6f9017SBarry Smith */ 11442fbe02b9SBarry Smith ierr = MatMPIDenseCopyFromPlapack(C,C);CHKERRQ(ierr); 11452fbe02b9SBarry Smith PetscFunctionReturn(0); 11462fbe02b9SBarry Smith } 11472fbe02b9SBarry Smith 11482fbe02b9SBarry Smith #undef __FUNCT__ 11492fbe02b9SBarry Smith #define __FUNCT__ "MatMatMultSymbolic_MPIDense_MPIDense" 11502fbe02b9SBarry Smith PetscErrorCode MatMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat *C) 11512fbe02b9SBarry Smith { 11522fbe02b9SBarry Smith PetscErrorCode ierr; 11532fbe02b9SBarry Smith PetscInt m=A->rmap.n,n=B->cmap.n; 11542fbe02b9SBarry Smith Mat Cmat; 11552fbe02b9SBarry Smith 11562fbe02b9SBarry Smith PetscFunctionBegin; 11572fbe02b9SBarry Smith if (A->cmap.n != B->rmap.n) SETERRQ2(PETSC_ERR_ARG_SIZ,"A->cmap.n %d != B->rmap.n %d\n",A->cmap.n,B->rmap.n); 11586e6f9017SBarry Smith SETERRQ(PETSC_ERR_LIB,"Due to aparent bugs in PLAPACK,this is not currently supported"); 11592fbe02b9SBarry Smith ierr = MatCreate(((PetscObject)B)->comm,&Cmat);CHKERRQ(ierr); 11602fbe02b9SBarry Smith ierr = MatSetSizes(Cmat,m,n,A->rmap.N,B->cmap.N);CHKERRQ(ierr); 11612fbe02b9SBarry Smith ierr = MatSetType(Cmat,MATMPIDENSE);CHKERRQ(ierr); 11622fbe02b9SBarry Smith ierr = MatAssemblyBegin(Cmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 11632fbe02b9SBarry Smith ierr = MatAssemblyEnd(Cmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 11642fbe02b9SBarry Smith ierr = MatMPIDenseCreatePlapack(A);CHKERRQ(ierr); 11652fbe02b9SBarry Smith ierr = MatMPIDenseCreatePlapack(B);CHKERRQ(ierr); 11662fbe02b9SBarry Smith ierr = MatMPIDenseCreatePlapack(Cmat);CHKERRQ(ierr); 11672fbe02b9SBarry Smith *C = Cmat; 11682fbe02b9SBarry Smith PetscFunctionReturn(0); 11692fbe02b9SBarry Smith } 11702fbe02b9SBarry Smith 11712fbe02b9SBarry Smith #undef __FUNCT__ 11722fbe02b9SBarry Smith #define __FUNCT__ "MatMatMult_MPIDense_MPIDense" 11732fbe02b9SBarry Smith PetscErrorCode MatMatMult_MPIDense_MPIDense(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C) 11742fbe02b9SBarry Smith { 11752fbe02b9SBarry Smith PetscErrorCode ierr; 11762fbe02b9SBarry Smith 11772fbe02b9SBarry Smith PetscFunctionBegin; 11782fbe02b9SBarry Smith if (scall == MAT_INITIAL_MATRIX){ 11792fbe02b9SBarry Smith ierr = MatMatMultSymbolic_MPIDense_MPIDense(A,B,fill,C);CHKERRQ(ierr); 11802fbe02b9SBarry Smith } 11812fbe02b9SBarry Smith ierr = MatMatMultNumeric_MPIDense_MPIDense(A,B,*C);CHKERRQ(ierr); 11822fbe02b9SBarry Smith PetscFunctionReturn(0); 11832fbe02b9SBarry Smith } 11842fbe02b9SBarry Smith 11852fbe02b9SBarry Smith 11862fbe02b9SBarry Smith #undef __FUNCT__ 118701b82886SBarry Smith #define __FUNCT__ "MatSolve_MPIDense" 118801b82886SBarry Smith PetscErrorCode MatSolve_MPIDense(Mat A,Vec b,Vec x) 118901b82886SBarry Smith { 119004fea9ffSBarry Smith MPI_Comm comm = ((PetscObject)A)->comm,dummy_comm; 119101b82886SBarry Smith Mat_Plapack *lu = (Mat_Plapack*)A->spptr; 119201b82886SBarry Smith PetscErrorCode ierr; 119301b82886SBarry Smith PetscInt M=A->rmap.N,m=A->rmap.n,rstart,i,j,*idx_pla,*idx_petsc,loc_m,loc_stride; 119401b82886SBarry Smith PetscScalar *array; 119501b82886SBarry Smith PetscReal one = 1.0; 1196aeccfd6fSBarry Smith PetscMPIInt size,r_rank,r_nproc,c_rank,c_nproc;; 119701b82886SBarry Smith PLA_Obj v_pla = NULL; 119801b82886SBarry Smith PetscScalar *loc_buf; 119901b82886SBarry Smith Vec loc_x; 120001b82886SBarry Smith 120101b82886SBarry Smith PetscFunctionBegin; 120201b82886SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 120301b82886SBarry Smith 120401b82886SBarry Smith /* Create PLAPACK vector objects, then copy b into PLAPACK b */ 120562b4c0b3SBarry Smith ierr = PLA_Mvector_create(lu->datatype,M,1,lu->templ,PLA_ALIGN_FIRST,&v_pla);CHKERRQ(ierr); 120662b4c0b3SBarry Smith ierr = PLA_Obj_set_to_zero(v_pla);CHKERRQ(ierr); 120701b82886SBarry Smith 120801b82886SBarry Smith /* Copy b into rhs_pla */ 120962b4c0b3SBarry Smith ierr = PLA_API_begin();CHKERRQ(ierr); 121062b4c0b3SBarry Smith ierr = PLA_Obj_API_open(v_pla);CHKERRQ(ierr); 121101b82886SBarry Smith ierr = VecGetArray(b,&array);CHKERRQ(ierr); 121262b4c0b3SBarry Smith ierr = PLA_API_axpy_vector_to_global(m,&one,(void *)array,1,v_pla,lu->rstart);CHKERRQ(ierr); 121301b82886SBarry Smith ierr = VecRestoreArray(b,&array);CHKERRQ(ierr); 121462b4c0b3SBarry Smith ierr = PLA_Obj_API_close(v_pla);CHKERRQ(ierr); 121562b4c0b3SBarry Smith ierr = PLA_API_end();CHKERRQ(ierr); 121601b82886SBarry Smith 121701b82886SBarry Smith if (A->factor == FACTOR_LU){ 121801b82886SBarry Smith /* Apply the permutations to the right hand sides */ 121962b4c0b3SBarry Smith ierr = PLA_Apply_pivots_to_rows (v_pla,lu->pivots);CHKERRQ(ierr); 122001b82886SBarry Smith 122101b82886SBarry Smith /* Solve L y = b, overwriting b with y */ 122262b4c0b3SBarry Smith ierr = PLA_Trsv( PLA_LOWER_TRIANGULAR,PLA_NO_TRANSPOSE,PLA_UNIT_DIAG,lu->A,v_pla );CHKERRQ(ierr); 122301b82886SBarry Smith 122401b82886SBarry Smith /* Solve U x = y (=b), overwriting b with x */ 122562b4c0b3SBarry Smith ierr = PLA_Trsv( PLA_UPPER_TRIANGULAR,PLA_NO_TRANSPOSE,PLA_NONUNIT_DIAG,lu->A,v_pla );CHKERRQ(ierr); 122601b82886SBarry Smith } else { /* FACTOR_CHOLESKY */ 122762b4c0b3SBarry Smith ierr = PLA_Trsv( PLA_LOWER_TRIANGULAR,PLA_NO_TRANSPOSE,PLA_NONUNIT_DIAG,lu->A,v_pla);CHKERRQ(ierr); 122862b4c0b3SBarry Smith ierr = PLA_Trsv( PLA_LOWER_TRIANGULAR,(lu->datatype == MPI_DOUBLE ? PLA_TRANSPOSE : PLA_CONJUGATE_TRANSPOSE),PLA_NONUNIT_DIAG,lu->A,v_pla);CHKERRQ(ierr); 122901b82886SBarry Smith } 123001b82886SBarry Smith 123101b82886SBarry Smith /* Copy PLAPACK x into Petsc vector x */ 123262b4c0b3SBarry Smith ierr = PLA_Obj_local_length(v_pla, &loc_m);CHKERRQ(ierr); 123362b4c0b3SBarry Smith ierr = PLA_Obj_local_buffer(v_pla, (void**)&loc_buf);CHKERRQ(ierr); 123462b4c0b3SBarry Smith ierr = PLA_Obj_local_stride(v_pla, &loc_stride);CHKERRQ(ierr); 123501b82886SBarry Smith ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,loc_m*loc_stride,loc_buf,&loc_x);CHKERRQ(ierr); 123601b82886SBarry Smith if (!lu->pla_solved){ 123701b82886SBarry Smith 123804fea9ffSBarry Smith ierr = PLA_Temp_comm_row_info(lu->templ,&dummy_comm,&r_rank,&r_nproc);CHKERRQ(ierr); 123904fea9ffSBarry Smith ierr = PLA_Temp_comm_col_info(lu->templ,&dummy_comm,&c_rank,&c_nproc);CHKERRQ(ierr); 124001b82886SBarry Smith /* printf(" [%d] rank: %d %d, nproc: %d %d\n",rank,r_rank,c_rank,r_nproc,c_nproc); */ 124101b82886SBarry Smith 124201b82886SBarry Smith /* Create IS and cts for VecScatterring */ 124362b4c0b3SBarry Smith ierr = PLA_Obj_local_length(v_pla, &loc_m);CHKERRQ(ierr); 124462b4c0b3SBarry Smith ierr = PLA_Obj_local_stride(v_pla, &loc_stride);CHKERRQ(ierr); 124501b82886SBarry Smith ierr = PetscMalloc((2*loc_m+1)*sizeof(PetscInt),&idx_pla);CHKERRQ(ierr); 124601b82886SBarry Smith idx_petsc = idx_pla + loc_m; 124701b82886SBarry Smith 124801b82886SBarry Smith rstart = (r_rank*c_nproc+c_rank)*lu->nb; 124901b82886SBarry Smith for (i=0; i<loc_m; i+=lu->nb){ 125001b82886SBarry Smith j = 0; 125101b82886SBarry Smith while (j < lu->nb && i+j < loc_m){ 125201b82886SBarry Smith idx_petsc[i+j] = rstart + j; j++; 125301b82886SBarry Smith } 125401b82886SBarry Smith rstart += size*lu->nb; 125501b82886SBarry Smith } 125601b82886SBarry Smith 125701b82886SBarry Smith for (i=0; i<loc_m; i++) idx_pla[i] = i*loc_stride; 125801b82886SBarry Smith 125901b82886SBarry Smith ierr = ISCreateGeneral(PETSC_COMM_SELF,loc_m,idx_pla,&lu->is_pla);CHKERRQ(ierr); 126001b82886SBarry Smith ierr = ISCreateGeneral(PETSC_COMM_SELF,loc_m,idx_petsc,&lu->is_petsc);CHKERRQ(ierr); 126101b82886SBarry Smith ierr = PetscFree(idx_pla);CHKERRQ(ierr); 126201b82886SBarry Smith ierr = VecScatterCreate(loc_x,lu->is_pla,x,lu->is_petsc,&lu->ctx);CHKERRQ(ierr); 126301b82886SBarry Smith } 126401b82886SBarry Smith ierr = VecScatterBegin(lu->ctx,loc_x,x,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 126501b82886SBarry Smith ierr = VecScatterEnd(lu->ctx,loc_x,x,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 126601b82886SBarry Smith 126701b82886SBarry Smith /* Free data */ 126801b82886SBarry Smith ierr = VecDestroy(loc_x);CHKERRQ(ierr); 126962b4c0b3SBarry Smith ierr = PLA_Obj_free(&v_pla);CHKERRQ(ierr); 127001b82886SBarry Smith 127101b82886SBarry Smith lu->pla_solved = PETSC_TRUE; 127201b82886SBarry Smith PetscFunctionReturn(0); 127301b82886SBarry Smith } 127401b82886SBarry Smith 127501b82886SBarry Smith #undef __FUNCT__ 127601b82886SBarry Smith #define __FUNCT__ "MatLUFactorNumeric_MPIDense" 127701b82886SBarry Smith PetscErrorCode MatLUFactorNumeric_MPIDense(Mat A,MatFactorInfo *info,Mat *F) 127801b82886SBarry Smith { 127901b82886SBarry Smith Mat_Plapack *lu = (Mat_Plapack*)(*F)->spptr; 128001b82886SBarry Smith PetscErrorCode ierr; 1281eae6fb2eSBarry Smith PetscInt info_pla; 128201b82886SBarry Smith 128301b82886SBarry Smith PetscFunctionBegin; 128462b4c0b3SBarry Smith ierr = PLA_Obj_set_to_zero(lu->A);CHKERRQ(ierr); 128501b82886SBarry Smith 1286eae6fb2eSBarry Smith /* Copy A into F->lu->A */ 1287eae6fb2eSBarry Smith ierr = MatMPIDenseCopyToPlapack(A,*F);CHKERRQ(ierr); 128801b82886SBarry Smith 128901b82886SBarry Smith /* Factor P A -> L U overwriting lower triangular portion of A with L, upper, U */ 129001b82886SBarry Smith info_pla = PLA_LU(lu->A,lu->pivots); 1291eae6fb2eSBarry Smith if (info_pla) SETERRQ1(PETSC_ERR_MAT_LU_ZRPVT,"Zero pivot encountered at row %d from PLA_LU()",info_pla); 129201b82886SBarry Smith 1293eae6fb2eSBarry Smith (*F)->assembled = PETSC_TRUE; 129401b82886SBarry Smith PetscFunctionReturn(0); 129501b82886SBarry Smith } 129601b82886SBarry Smith 129701b82886SBarry Smith #undef __FUNCT__ 129801b82886SBarry Smith #define __FUNCT__ "MatCholeskyFactorNumeric_MPIDense" 129901b82886SBarry Smith PetscErrorCode MatCholeskyFactorNumeric_MPIDense(Mat A,MatFactorInfo *info,Mat *F) 130001b82886SBarry Smith { 130101b82886SBarry Smith Mat_Plapack *lu = (Mat_Plapack*)(*F)->spptr; 130201b82886SBarry Smith PetscErrorCode ierr; 1303eae6fb2eSBarry Smith PetscInt info_pla; 130401b82886SBarry Smith 130501b82886SBarry Smith PetscFunctionBegin; 1306e0fbc2eeSBarry Smith 1307eae6fb2eSBarry Smith /* Copy A into F->lu->A */ 1308eae6fb2eSBarry Smith ierr = MatMPIDenseCopyToPlapack(A,*F);CHKERRQ(ierr); 130901b82886SBarry Smith 131001b82886SBarry Smith /* Factor P A -> Chol */ 131101b82886SBarry Smith info_pla = PLA_Chol(PLA_LOWER_TRIANGULAR,lu->A); 1312eae6fb2eSBarry Smith if (info_pla) SETERRQ1( PETSC_ERR_MAT_CH_ZRPVT,"Nonpositive definite matrix detected at row %d from PLA_Chol()",info_pla); 131301b82886SBarry Smith 1314eae6fb2eSBarry Smith (*F)->assembled = PETSC_TRUE; 131501b82886SBarry Smith PetscFunctionReturn(0); 131601b82886SBarry Smith } 131701b82886SBarry Smith 1318eae6fb2eSBarry Smith 131901b82886SBarry Smith #undef __FUNCT__ 132001b82886SBarry Smith #define __FUNCT__ "MatFactorSymbolic_MPIDense_Private" 132101b82886SBarry Smith PetscErrorCode MatFactorSymbolic_MPIDense_Private(Mat A,MatFactorInfo *info,Mat *F) 132201b82886SBarry Smith { 132301b82886SBarry Smith PetscErrorCode ierr; 132401b82886SBarry Smith 132501b82886SBarry Smith PetscFunctionBegin; 132601b82886SBarry Smith /* Create the factorization matrix */ 1327eae6fb2eSBarry Smith ierr = MatCreate(((PetscObject)A)->comm,F);CHKERRQ(ierr); 1328eae6fb2eSBarry Smith ierr = MatSetSizes(*F,A->rmap.n,A->cmap.n,A->rmap.N,A->cmap.N);CHKERRQ(ierr); 1329eae6fb2eSBarry Smith ierr = MatSetType(*F,((PetscObject)A)->type_name);CHKERRQ(ierr); 1330eae6fb2eSBarry Smith ierr = MatMPIDenseCreatePlapack(*F);CHKERRQ(ierr); 133101b82886SBarry Smith PetscFunctionReturn(0); 133201b82886SBarry Smith } 133301b82886SBarry Smith 133401b82886SBarry Smith /* Note the Petsc r and c permutations are ignored */ 133501b82886SBarry Smith #undef __FUNCT__ 133601b82886SBarry Smith #define __FUNCT__ "MatLUFactorSymbolic_MPIDense" 133701b82886SBarry Smith PetscErrorCode MatLUFactorSymbolic_MPIDense(Mat A,IS r,IS c,MatFactorInfo *info,Mat *F) 133801b82886SBarry Smith { 133901b82886SBarry Smith PetscErrorCode ierr; 1340e1156936SBarry Smith PetscInt M = A->rmap.N; 1341e1156936SBarry Smith Mat_Plapack *lu; 134201b82886SBarry Smith 134301b82886SBarry Smith PetscFunctionBegin; 134401b82886SBarry Smith ierr = MatFactorSymbolic_MPIDense_Private(A,info,F);CHKERRQ(ierr); 1345e1156936SBarry Smith lu = (Mat_Plapack*)(*F)->spptr; 1346e1156936SBarry Smith ierr = PLA_Mvector_create(MPI_INT,M,1,lu->templ,PLA_ALIGN_FIRST,&lu->pivots);CHKERRQ(ierr); 134701b82886SBarry Smith (*F)->factor = FACTOR_LU; 134801b82886SBarry Smith PetscFunctionReturn(0); 134901b82886SBarry Smith } 135001b82886SBarry Smith 135101b82886SBarry Smith /* Note the Petsc perm permutation is ignored */ 135201b82886SBarry Smith #undef __FUNCT__ 135301b82886SBarry Smith #define __FUNCT__ "MatCholeskyFactorSymbolic_MPIDense" 135401b82886SBarry Smith PetscErrorCode MatCholeskyFactorSymbolic_MPIDense(Mat A,IS perm,MatFactorInfo *info,Mat *F) 135501b82886SBarry Smith { 135601b82886SBarry Smith PetscErrorCode ierr; 135701b82886SBarry Smith PetscTruth issymmetric,set; 135801b82886SBarry Smith 135901b82886SBarry Smith PetscFunctionBegin; 136001b82886SBarry Smith ierr = MatIsSymmetricKnown(A,&set,&issymmetric); CHKERRQ(ierr); 136101b82886SBarry Smith if (!set || !issymmetric) SETERRQ(PETSC_ERR_USER,"Matrix must be set as MAT_SYMMETRIC for CholeskyFactor()"); 136201b82886SBarry Smith ierr = MatFactorSymbolic_MPIDense_Private(A,info,F);CHKERRQ(ierr); 136301b82886SBarry Smith (*F)->factor = FACTOR_CHOLESKY; 136401b82886SBarry Smith PetscFunctionReturn(0); 136501b82886SBarry Smith } 136601b82886SBarry Smith #endif 136701b82886SBarry Smith 13688965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/ 136909dc0095SBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIDense, 137009dc0095SBarry Smith MatGetRow_MPIDense, 137109dc0095SBarry Smith MatRestoreRow_MPIDense, 137209dc0095SBarry Smith MatMult_MPIDense, 137397304618SKris Buschelman /* 4*/ MatMultAdd_MPIDense, 13747c922b88SBarry Smith MatMultTranspose_MPIDense, 13757c922b88SBarry Smith MatMultTransposeAdd_MPIDense, 137601b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK) 137701b82886SBarry Smith MatSolve_MPIDense, 137801b82886SBarry Smith #else 13798965ea79SLois Curfman McInnes 0, 138001b82886SBarry Smith #endif 138109dc0095SBarry Smith 0, 138209dc0095SBarry Smith 0, 138397304618SKris Buschelman /*10*/ 0, 138409dc0095SBarry Smith 0, 138509dc0095SBarry Smith 0, 138609dc0095SBarry Smith 0, 138709dc0095SBarry Smith MatTranspose_MPIDense, 138897304618SKris Buschelman /*15*/ MatGetInfo_MPIDense, 13896e4ee0c6SHong Zhang MatEqual_MPIDense, 139009dc0095SBarry Smith MatGetDiagonal_MPIDense, 13915b2fa520SLois Curfman McInnes MatDiagonalScale_MPIDense, 139209dc0095SBarry Smith MatNorm_MPIDense, 139397304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIDense, 139409dc0095SBarry Smith MatAssemblyEnd_MPIDense, 139509dc0095SBarry Smith 0, 139609dc0095SBarry Smith MatSetOption_MPIDense, 139709dc0095SBarry Smith MatZeroEntries_MPIDense, 139897304618SKris Buschelman /*25*/ MatZeroRows_MPIDense, 139901b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK) 14000ad19415SHong Zhang MatLUFactorSymbolic_MPIDense, 140101b82886SBarry Smith MatLUFactorNumeric_MPIDense, 14020ad19415SHong Zhang MatCholeskyFactorSymbolic_MPIDense, 140301b82886SBarry Smith MatCholeskyFactorNumeric_MPIDense, 140401b82886SBarry Smith #else 1405919b68f7SBarry Smith 0, 140601b82886SBarry Smith 0, 140701b82886SBarry Smith 0, 140801b82886SBarry Smith 0, 140901b82886SBarry Smith #endif 141097304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPIDense, 1411273d9f13SBarry Smith 0, 141209dc0095SBarry Smith 0, 141309dc0095SBarry Smith MatGetArray_MPIDense, 141409dc0095SBarry Smith MatRestoreArray_MPIDense, 141597304618SKris Buschelman /*35*/ MatDuplicate_MPIDense, 141609dc0095SBarry Smith 0, 141709dc0095SBarry Smith 0, 141809dc0095SBarry Smith 0, 141909dc0095SBarry Smith 0, 142097304618SKris Buschelman /*40*/ 0, 14212ce60cd0SSatish Balay MatGetSubMatrices_MPIDense, 142209dc0095SBarry Smith 0, 142309dc0095SBarry Smith MatGetValues_MPIDense, 142409dc0095SBarry Smith 0, 142597304618SKris Buschelman /*45*/ 0, 142609dc0095SBarry Smith MatScale_MPIDense, 142709dc0095SBarry Smith 0, 142809dc0095SBarry Smith 0, 142909dc0095SBarry Smith 0, 1430521d7252SBarry Smith /*50*/ 0, 143109dc0095SBarry Smith 0, 143209dc0095SBarry Smith 0, 143309dc0095SBarry Smith 0, 143409dc0095SBarry Smith 0, 143597304618SKris Buschelman /*55*/ 0, 143609dc0095SBarry Smith 0, 143709dc0095SBarry Smith 0, 143809dc0095SBarry Smith 0, 143909dc0095SBarry Smith 0, 144097304618SKris Buschelman /*60*/ MatGetSubMatrix_MPIDense, 1441b9b97703SBarry Smith MatDestroy_MPIDense, 1442b9b97703SBarry Smith MatView_MPIDense, 1443357abbc8SBarry Smith 0, 144497304618SKris Buschelman 0, 144597304618SKris Buschelman /*65*/ 0, 144697304618SKris Buschelman 0, 144797304618SKris Buschelman 0, 144897304618SKris Buschelman 0, 144997304618SKris Buschelman 0, 145097304618SKris Buschelman /*70*/ 0, 145197304618SKris Buschelman 0, 145297304618SKris Buschelman 0, 145397304618SKris Buschelman 0, 145497304618SKris Buschelman 0, 145597304618SKris Buschelman /*75*/ 0, 145697304618SKris Buschelman 0, 145797304618SKris Buschelman 0, 145897304618SKris Buschelman 0, 145997304618SKris Buschelman 0, 146097304618SKris Buschelman /*80*/ 0, 146197304618SKris Buschelman 0, 146297304618SKris Buschelman 0, 146397304618SKris Buschelman 0, 1464865e5f61SKris Buschelman /*84*/ MatLoad_MPIDense, 1465865e5f61SKris Buschelman 0, 1466865e5f61SKris Buschelman 0, 1467865e5f61SKris Buschelman 0, 1468865e5f61SKris Buschelman 0, 1469865e5f61SKris Buschelman 0, 14702fbe02b9SBarry Smith /*90*/ 14712fbe02b9SBarry Smith #if defined(PETSC_HAVE_PLAPACK) 14722fbe02b9SBarry Smith MatMatMult_MPIDense_MPIDense, 14734ae313f4SHong Zhang MatMatMultSymbolic_MPIDense_MPIDense, 14742fbe02b9SBarry Smith MatMatMultNumeric_MPIDense_MPIDense, 14752fbe02b9SBarry Smith #else 1476865e5f61SKris Buschelman 0, 1477865e5f61SKris Buschelman 0, 1478865e5f61SKris Buschelman 0, 14792fbe02b9SBarry Smith #endif 14802fbe02b9SBarry Smith 0, 1481865e5f61SKris Buschelman /*95*/ 0, 1482865e5f61SKris Buschelman 0, 1483865e5f61SKris Buschelman 0, 1484865e5f61SKris Buschelman 0}; 14858965ea79SLois Curfman McInnes 1486273d9f13SBarry Smith EXTERN_C_BEGIN 14874a2ae208SSatish Balay #undef __FUNCT__ 1488a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIDenseSetPreallocation_MPIDense" 1489be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIDenseSetPreallocation_MPIDense(Mat mat,PetscScalar *data) 1490a23d5eceSKris Buschelman { 1491a23d5eceSKris Buschelman Mat_MPIDense *a; 1492dfbe8321SBarry Smith PetscErrorCode ierr; 1493a23d5eceSKris Buschelman 1494a23d5eceSKris Buschelman PetscFunctionBegin; 1495a23d5eceSKris Buschelman mat->preallocated = PETSC_TRUE; 1496a23d5eceSKris Buschelman /* Note: For now, when data is specified above, this assumes the user correctly 1497a23d5eceSKris Buschelman allocates the local dense storage space. We should add error checking. */ 1498a23d5eceSKris Buschelman 1499a23d5eceSKris Buschelman a = (Mat_MPIDense*)mat->data; 1500f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&a->A);CHKERRQ(ierr); 1501899cda47SBarry Smith ierr = MatSetSizes(a->A,mat->rmap.n,mat->cmap.N,mat->rmap.n,mat->cmap.N);CHKERRQ(ierr); 15025c5985e7SKris Buschelman ierr = MatSetType(a->A,MATSEQDENSE);CHKERRQ(ierr); 15035c5985e7SKris Buschelman ierr = MatSeqDenseSetPreallocation(a->A,data);CHKERRQ(ierr); 150452e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 1505a23d5eceSKris Buschelman PetscFunctionReturn(0); 1506a23d5eceSKris Buschelman } 1507a23d5eceSKris Buschelman EXTERN_C_END 1508a23d5eceSKris Buschelman 15097878bbefSBarry Smith EXTERN_C_BEGIN 15107878bbefSBarry Smith #if defined(PETSC_HAVE_PLAPACK) 15117878bbefSBarry Smith #undef __FUNCT__ 15127878bbefSBarry Smith #define __FUNCT__ "MatSetSolverType_MPIDense_PLAPACK" 15137878bbefSBarry Smith PetscErrorCode PETSCMAT_DLLEXPORT MatSetSolverType_MPIDense_PLAPACK(Mat mat,const char *type) 15147878bbefSBarry Smith { 15157878bbefSBarry Smith PetscFunctionBegin; 15167878bbefSBarry Smith /* dummy function so that -mat_solver_type plapack or MatSetSolverType(mat,"plapack"); silently work (since PLAPACK is on by default) */ 15177878bbefSBarry Smith PetscFunctionReturn(0); 15187878bbefSBarry Smith } 15197878bbefSBarry Smith #endif 15207a667e6fSSatish Balay EXTERN_C_END 15217878bbefSBarry Smith 15220bad9183SKris Buschelman /*MC 1523fafad747SKris Buschelman MATMPIDENSE - MATMPIDENSE = "mpidense" - A matrix type to be used for distributed dense matrices. 15240bad9183SKris Buschelman 15250bad9183SKris Buschelman Options Database Keys: 15260bad9183SKris Buschelman . -mat_type mpidense - sets the matrix type to "mpidense" during a call to MatSetFromOptions() 15270bad9183SKris Buschelman 15280bad9183SKris Buschelman Level: beginner 15290bad9183SKris Buschelman 15307878bbefSBarry Smith MATMPIDENSE matrices may use direct solvers (LU, Cholesky, and QR) 15317878bbefSBarry Smith for parallel dense matrices via the external package PLAPACK, if PLAPACK is installed 15327878bbefSBarry Smith (run config/configure.py with the option --download-plapack) 15337878bbefSBarry Smith 15347878bbefSBarry Smith 15357878bbefSBarry Smith Options Database Keys: 15367878bbefSBarry Smith . -mat_plapack_nprows <n> - number of rows in processor partition 15377878bbefSBarry Smith . -mat_plapack_npcols <n> - number of columns in processor partition 15387878bbefSBarry Smith . -mat_plapack_nb <n> - block size of template vector 15397878bbefSBarry Smith . -mat_plapack_nb_alg <n> - algorithmic block size 15407878bbefSBarry Smith - -mat_plapack_ckerror <n> - error checking flag 15417878bbefSBarry Smith 15427878bbefSBarry Smith .seealso: MatCreateMPIDense(), MATDENSE, MATSEQDENSE 15430bad9183SKris Buschelman M*/ 15440bad9183SKris Buschelman 1545a23d5eceSKris Buschelman EXTERN_C_BEGIN 1546a23d5eceSKris Buschelman #undef __FUNCT__ 15474a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIDense" 1548be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPIDense(Mat mat) 1549273d9f13SBarry Smith { 1550273d9f13SBarry Smith Mat_MPIDense *a; 1551dfbe8321SBarry Smith PetscErrorCode ierr; 1552273d9f13SBarry Smith 1553273d9f13SBarry Smith PetscFunctionBegin; 155438f2d2fdSLisandro Dalcin ierr = PetscNewLog(mat,Mat_MPIDense,&a);CHKERRQ(ierr); 1555b0a32e0cSBarry Smith mat->data = (void*)a; 1556273d9f13SBarry Smith ierr = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1557273d9f13SBarry Smith mat->factor = 0; 1558273d9f13SBarry Smith mat->mapping = 0; 1559273d9f13SBarry Smith 1560273d9f13SBarry Smith mat->insertmode = NOT_SET_VALUES; 15617adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&a->rank);CHKERRQ(ierr); 15627adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)mat)->comm,&a->size);CHKERRQ(ierr); 1563273d9f13SBarry Smith 1564899cda47SBarry Smith mat->rmap.bs = mat->cmap.bs = 1; 15656148ca0dSBarry Smith ierr = PetscMapSetUp(&mat->rmap);CHKERRQ(ierr); 15666148ca0dSBarry Smith ierr = PetscMapSetUp(&mat->cmap);CHKERRQ(ierr); 1567899cda47SBarry Smith a->nvec = mat->cmap.n; 1568273d9f13SBarry Smith 1569273d9f13SBarry Smith /* build cache for off array entries formed */ 1570273d9f13SBarry Smith a->donotstash = PETSC_FALSE; 15717adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)mat)->comm,1,&mat->stash);CHKERRQ(ierr); 1572273d9f13SBarry Smith 1573273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 1574273d9f13SBarry Smith a->lvec = 0; 1575273d9f13SBarry Smith a->Mvctx = 0; 1576273d9f13SBarry Smith a->roworiented = PETSC_TRUE; 1577273d9f13SBarry Smith 1578273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatGetDiagonalBlock_C", 1579273d9f13SBarry Smith "MatGetDiagonalBlock_MPIDense", 1580273d9f13SBarry Smith MatGetDiagonalBlock_MPIDense);CHKERRQ(ierr); 1581a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMPIDenseSetPreallocation_C", 1582a23d5eceSKris Buschelman "MatMPIDenseSetPreallocation_MPIDense", 1583a23d5eceSKris Buschelman MatMPIDenseSetPreallocation_MPIDense);CHKERRQ(ierr); 15844ae313f4SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMatMult_mpiaij_mpidense_C", 15854ae313f4SHong Zhang "MatMatMult_MPIAIJ_MPIDense", 15864ae313f4SHong Zhang MatMatMult_MPIAIJ_MPIDense);CHKERRQ(ierr); 15874ae313f4SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C", 15884ae313f4SHong Zhang "MatMatMultSymbolic_MPIAIJ_MPIDense", 15894ae313f4SHong Zhang MatMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr); 15904ae313f4SHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C", 15914ae313f4SHong Zhang "MatMatMultNumeric_MPIAIJ_MPIDense", 15924ae313f4SHong Zhang MatMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr); 15937878bbefSBarry Smith #if defined(PETSC_HAVE_PLAPACK) 15947878bbefSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatSetSolverType_mpidense_plapack_C", 15957878bbefSBarry Smith "MatSetSolverType_MPIDense_PLAPACK", 15967878bbefSBarry Smith MatSetSolverType_MPIDense_PLAPACK);CHKERRQ(ierr); 15977878bbefSBarry Smith #endif 159838aed534SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)mat,MATMPIDENSE);CHKERRQ(ierr); 159901b82886SBarry Smith 1600273d9f13SBarry Smith PetscFunctionReturn(0); 1601273d9f13SBarry Smith } 1602273d9f13SBarry Smith EXTERN_C_END 1603273d9f13SBarry Smith 1604209238afSKris Buschelman /*MC 1605002d173eSKris Buschelman MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices. 1606209238afSKris Buschelman 1607209238afSKris Buschelman This matrix type is identical to MATSEQDENSE when constructed with a single process communicator, 1608209238afSKris Buschelman and MATMPIDENSE otherwise. 1609209238afSKris Buschelman 1610209238afSKris Buschelman Options Database Keys: 1611209238afSKris Buschelman . -mat_type dense - sets the matrix type to "dense" during a call to MatSetFromOptions() 1612209238afSKris Buschelman 1613209238afSKris Buschelman Level: beginner 1614209238afSKris Buschelman 161501b82886SBarry Smith 1616209238afSKris Buschelman .seealso: MatCreateMPIDense,MATSEQDENSE,MATMPIDENSE 1617209238afSKris Buschelman M*/ 1618209238afSKris Buschelman 1619209238afSKris Buschelman EXTERN_C_BEGIN 1620209238afSKris Buschelman #undef __FUNCT__ 1621209238afSKris Buschelman #define __FUNCT__ "MatCreate_Dense" 1622be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_Dense(Mat A) 1623dfbe8321SBarry Smith { 16246849ba73SBarry Smith PetscErrorCode ierr; 162513f74950SBarry Smith PetscMPIInt size; 1626209238afSKris Buschelman 1627209238afSKris Buschelman PetscFunctionBegin; 16287adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 1629209238afSKris Buschelman if (size == 1) { 1630209238afSKris Buschelman ierr = MatSetType(A,MATSEQDENSE);CHKERRQ(ierr); 1631209238afSKris Buschelman } else { 1632209238afSKris Buschelman ierr = MatSetType(A,MATMPIDENSE);CHKERRQ(ierr); 1633209238afSKris Buschelman } 1634209238afSKris Buschelman PetscFunctionReturn(0); 1635209238afSKris Buschelman } 1636209238afSKris Buschelman EXTERN_C_END 1637209238afSKris Buschelman 16384a2ae208SSatish Balay #undef __FUNCT__ 16394a2ae208SSatish Balay #define __FUNCT__ "MatMPIDenseSetPreallocation" 1640273d9f13SBarry Smith /*@C 1641273d9f13SBarry Smith MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries 1642273d9f13SBarry Smith 1643273d9f13SBarry Smith Not collective 1644273d9f13SBarry Smith 1645273d9f13SBarry Smith Input Parameters: 1646273d9f13SBarry Smith . A - the matrix 1647273d9f13SBarry Smith - data - optional location of matrix data. Set data=PETSC_NULL for PETSc 1648273d9f13SBarry Smith to control all matrix memory allocation. 1649273d9f13SBarry Smith 1650273d9f13SBarry Smith Notes: 1651273d9f13SBarry Smith The dense format is fully compatible with standard Fortran 77 1652273d9f13SBarry Smith storage by columns. 1653273d9f13SBarry Smith 1654273d9f13SBarry Smith The data input variable is intended primarily for Fortran programmers 1655273d9f13SBarry Smith who wish to allocate their own matrix memory space. Most users should 1656273d9f13SBarry Smith set data=PETSC_NULL. 1657273d9f13SBarry Smith 1658273d9f13SBarry Smith Level: intermediate 1659273d9f13SBarry Smith 1660273d9f13SBarry Smith .keywords: matrix,dense, parallel 1661273d9f13SBarry Smith 1662273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 1663273d9f13SBarry Smith @*/ 1664be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIDenseSetPreallocation(Mat mat,PetscScalar *data) 1665273d9f13SBarry Smith { 1666dfbe8321SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscScalar *); 1667273d9f13SBarry Smith 1668273d9f13SBarry Smith PetscFunctionBegin; 1669565567f0SKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 1670a23d5eceSKris Buschelman if (f) { 1671a23d5eceSKris Buschelman ierr = (*f)(mat,data);CHKERRQ(ierr); 1672a23d5eceSKris Buschelman } 1673273d9f13SBarry Smith PetscFunctionReturn(0); 1674273d9f13SBarry Smith } 1675273d9f13SBarry Smith 16764a2ae208SSatish Balay #undef __FUNCT__ 16774a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPIDense" 16788965ea79SLois Curfman McInnes /*@C 167939ddd567SLois Curfman McInnes MatCreateMPIDense - Creates a sparse parallel matrix in dense format. 16808965ea79SLois Curfman McInnes 1681db81eaa0SLois Curfman McInnes Collective on MPI_Comm 1682db81eaa0SLois Curfman McInnes 16838965ea79SLois Curfman McInnes Input Parameters: 1684db81eaa0SLois Curfman McInnes + comm - MPI communicator 16858965ea79SLois Curfman McInnes . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1686db81eaa0SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 16878965ea79SLois Curfman McInnes . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 1688db81eaa0SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 16897f5ff6fdSBarry Smith - data - optional location of matrix data. Set data=PETSC_NULL (PETSC_NULL_SCALAR for Fortran users) for PETSc 1690dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 16918965ea79SLois Curfman McInnes 16928965ea79SLois Curfman McInnes Output Parameter: 1693477f1c0bSLois Curfman McInnes . A - the matrix 16948965ea79SLois Curfman McInnes 1695b259b22eSLois Curfman McInnes Notes: 169639ddd567SLois Curfman McInnes The dense format is fully compatible with standard Fortran 77 169739ddd567SLois Curfman McInnes storage by columns. 16988965ea79SLois Curfman McInnes 169918f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 170018f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 17017f5ff6fdSBarry Smith set data=PETSC_NULL (PETSC_NULL_SCALAR for Fortran users). 170218f449edSLois Curfman McInnes 17038965ea79SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 17048965ea79SLois Curfman McInnes (possibly both). 17058965ea79SLois Curfman McInnes 1706027ccd11SLois Curfman McInnes Level: intermediate 1707027ccd11SLois Curfman McInnes 170839ddd567SLois Curfman McInnes .keywords: matrix,dense, parallel 17098965ea79SLois Curfman McInnes 171039ddd567SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 17118965ea79SLois Curfman McInnes @*/ 1712be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPIDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 17138965ea79SLois Curfman McInnes { 17146849ba73SBarry Smith PetscErrorCode ierr; 171513f74950SBarry Smith PetscMPIInt size; 17168965ea79SLois Curfman McInnes 17173a40ed3dSBarry Smith PetscFunctionBegin; 1718f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 1719f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 1720273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1721273d9f13SBarry Smith if (size > 1) { 1722273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIDENSE);CHKERRQ(ierr); 1723273d9f13SBarry Smith ierr = MatMPIDenseSetPreallocation(*A,data);CHKERRQ(ierr); 1724273d9f13SBarry Smith } else { 1725273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr); 1726273d9f13SBarry Smith ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr); 17278c469469SLois Curfman McInnes } 17283a40ed3dSBarry Smith PetscFunctionReturn(0); 17298965ea79SLois Curfman McInnes } 17308965ea79SLois Curfman McInnes 17314a2ae208SSatish Balay #undef __FUNCT__ 17324a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIDense" 17336849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat) 17348965ea79SLois Curfman McInnes { 17358965ea79SLois Curfman McInnes Mat mat; 17363501a2bdSLois Curfman McInnes Mat_MPIDense *a,*oldmat = (Mat_MPIDense*)A->data; 1737dfbe8321SBarry Smith PetscErrorCode ierr; 17388965ea79SLois Curfman McInnes 17393a40ed3dSBarry Smith PetscFunctionBegin; 17408965ea79SLois Curfman McInnes *newmat = 0; 17417adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)A)->comm,&mat);CHKERRQ(ierr); 1742899cda47SBarry Smith ierr = MatSetSizes(mat,A->rmap.n,A->cmap.n,A->rmap.N,A->cmap.N);CHKERRQ(ierr); 17437adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)A)->type_name);CHKERRQ(ierr); 1744834f8fabSBarry Smith a = (Mat_MPIDense*)mat->data; 1745e04c1aa4SHong Zhang ierr = PetscMemcpy(mat->ops,A->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 17463501a2bdSLois Curfman McInnes mat->factor = A->factor; 1747c456f294SBarry Smith mat->assembled = PETSC_TRUE; 1748273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 17498965ea79SLois Curfman McInnes 1750899cda47SBarry Smith mat->rmap.rstart = A->rmap.rstart; 1751899cda47SBarry Smith mat->rmap.rend = A->rmap.rend; 17528965ea79SLois Curfman McInnes a->size = oldmat->size; 17538965ea79SLois Curfman McInnes a->rank = oldmat->rank; 1754e0fa3b82SLois Curfman McInnes mat->insertmode = NOT_SET_VALUES; 1755b9b97703SBarry Smith a->nvec = oldmat->nvec; 17563782ba37SSatish Balay a->donotstash = oldmat->donotstash; 1757e04c1aa4SHong Zhang 1758899cda47SBarry Smith ierr = PetscMemcpy(mat->rmap.range,A->rmap.range,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr); 1759899cda47SBarry Smith ierr = PetscMemcpy(mat->cmap.range,A->cmap.range,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr); 17607adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)A)->comm,1,&mat->stash);CHKERRQ(ierr); 17618965ea79SLois Curfman McInnes 1762329f5518SBarry Smith ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 17635609ef8eSBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 176452e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 176501b82886SBarry Smith 176601b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK) 176701b82886SBarry Smith ierr = PetscMemcpy(mat->spptr,A->spptr,sizeof(Mat_Plapack));CHKERRQ(ierr); 176801b82886SBarry Smith #endif 17698965ea79SLois Curfman McInnes *newmat = mat; 17703a40ed3dSBarry Smith PetscFunctionReturn(0); 17718965ea79SLois Curfman McInnes } 17728965ea79SLois Curfman McInnes 1773e090d566SSatish Balay #include "petscsys.h" 17748965ea79SLois Curfman McInnes 17754a2ae208SSatish Balay #undef __FUNCT__ 17764a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIDense_DenseInFile" 1777f69a0ea3SMatthew Knepley PetscErrorCode MatLoad_MPIDense_DenseInFile(MPI_Comm comm,PetscInt fd,PetscInt M,PetscInt N, MatType type,Mat *newmat) 177890ace30eSBarry Smith { 17796849ba73SBarry Smith PetscErrorCode ierr; 178032dcc486SBarry Smith PetscMPIInt rank,size; 178113f74950SBarry Smith PetscInt *rowners,i,m,nz,j; 178287828ca2SBarry Smith PetscScalar *array,*vals,*vals_ptr; 178390ace30eSBarry Smith MPI_Status status; 178490ace30eSBarry Smith 17853a40ed3dSBarry Smith PetscFunctionBegin; 1786d132466eSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 1787d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 178890ace30eSBarry Smith 178990ace30eSBarry Smith /* determine ownership of all rows */ 179090ace30eSBarry Smith m = M/size + ((M % size) > rank); 179113f74950SBarry Smith ierr = PetscMalloc((size+2)*sizeof(PetscInt),&rowners);CHKERRQ(ierr); 179213f74950SBarry Smith ierr = MPI_Allgather(&m,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr); 179390ace30eSBarry Smith rowners[0] = 0; 179490ace30eSBarry Smith for (i=2; i<=size; i++) { 179590ace30eSBarry Smith rowners[i] += rowners[i-1]; 179690ace30eSBarry Smith } 179790ace30eSBarry Smith 1798f69a0ea3SMatthew Knepley ierr = MatCreate(comm,newmat);CHKERRQ(ierr); 1799f69a0ea3SMatthew Knepley ierr = MatSetSizes(*newmat,m,PETSC_DECIDE,M,N);CHKERRQ(ierr); 1800be5d1d56SKris Buschelman ierr = MatSetType(*newmat,type);CHKERRQ(ierr); 1801878740d9SKris Buschelman ierr = MatMPIDenseSetPreallocation(*newmat,PETSC_NULL);CHKERRQ(ierr); 180290ace30eSBarry Smith ierr = MatGetArray(*newmat,&array);CHKERRQ(ierr); 180390ace30eSBarry Smith 180490ace30eSBarry Smith if (!rank) { 180587828ca2SBarry Smith ierr = PetscMalloc(m*N*sizeof(PetscScalar),&vals);CHKERRQ(ierr); 180690ace30eSBarry Smith 180790ace30eSBarry Smith /* read in my part of the matrix numerical values */ 18080752156aSBarry Smith ierr = PetscBinaryRead(fd,vals,m*N,PETSC_SCALAR);CHKERRQ(ierr); 180990ace30eSBarry Smith 181090ace30eSBarry Smith /* insert into matrix-by row (this is why cannot directly read into array */ 181190ace30eSBarry Smith vals_ptr = vals; 181290ace30eSBarry Smith for (i=0; i<m; i++) { 181390ace30eSBarry Smith for (j=0; j<N; j++) { 181490ace30eSBarry Smith array[i + j*m] = *vals_ptr++; 181590ace30eSBarry Smith } 181690ace30eSBarry Smith } 181790ace30eSBarry Smith 181890ace30eSBarry Smith /* read in other processors and ship out */ 181990ace30eSBarry Smith for (i=1; i<size; i++) { 182090ace30eSBarry Smith nz = (rowners[i+1] - rowners[i])*N; 18210752156aSBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 18227adad957SLisandro Dalcin ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)(*newmat))->tag,comm);CHKERRQ(ierr); 182390ace30eSBarry Smith } 18243a40ed3dSBarry Smith } else { 182590ace30eSBarry Smith /* receive numeric values */ 182687828ca2SBarry Smith ierr = PetscMalloc(m*N*sizeof(PetscScalar),&vals);CHKERRQ(ierr); 182790ace30eSBarry Smith 182890ace30eSBarry Smith /* receive message of values*/ 18297adad957SLisandro Dalcin ierr = MPI_Recv(vals,m*N,MPIU_SCALAR,0,((PetscObject)(*newmat))->tag,comm,&status);CHKERRQ(ierr); 183090ace30eSBarry Smith 183190ace30eSBarry Smith /* insert into matrix-by row (this is why cannot directly read into array */ 183290ace30eSBarry Smith vals_ptr = vals; 183390ace30eSBarry Smith for (i=0; i<m; i++) { 183490ace30eSBarry Smith for (j=0; j<N; j++) { 183590ace30eSBarry Smith array[i + j*m] = *vals_ptr++; 183690ace30eSBarry Smith } 183790ace30eSBarry Smith } 183890ace30eSBarry Smith } 1839606d414cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 1840606d414cSSatish Balay ierr = PetscFree(vals);CHKERRQ(ierr); 18416d4a8577SBarry Smith ierr = MatAssemblyBegin(*newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 18426d4a8577SBarry Smith ierr = MatAssemblyEnd(*newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 18433a40ed3dSBarry Smith PetscFunctionReturn(0); 184490ace30eSBarry Smith } 184590ace30eSBarry Smith 18464a2ae208SSatish Balay #undef __FUNCT__ 18474a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIDense" 1848f69a0ea3SMatthew Knepley PetscErrorCode MatLoad_MPIDense(PetscViewer viewer, MatType type,Mat *newmat) 18498965ea79SLois Curfman McInnes { 18508965ea79SLois Curfman McInnes Mat A; 185187828ca2SBarry Smith PetscScalar *vals,*svals; 185219bcc07fSBarry Smith MPI_Comm comm = ((PetscObject)viewer)->comm; 18538965ea79SLois Curfman McInnes MPI_Status status; 185413f74950SBarry Smith PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*rowners,*sndcounts,m,maxnz; 185513f74950SBarry Smith PetscInt header[4],*rowlengths = 0,M,N,*cols; 185613f74950SBarry Smith PetscInt *ourlens,*procsnz = 0,*offlens,jj,*mycols,*smycols; 185713f74950SBarry Smith PetscInt i,nz,j,rstart,rend; 185813f74950SBarry Smith int fd; 18596849ba73SBarry Smith PetscErrorCode ierr; 18608965ea79SLois Curfman McInnes 18613a40ed3dSBarry Smith PetscFunctionBegin; 1862d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1863d132466eSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 18648965ea79SLois Curfman McInnes if (!rank) { 1865b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 18660752156aSBarry Smith ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 1867552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 18688965ea79SLois Curfman McInnes } 18698965ea79SLois Curfman McInnes 187013f74950SBarry Smith ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 187190ace30eSBarry Smith M = header[1]; N = header[2]; nz = header[3]; 187290ace30eSBarry Smith 187390ace30eSBarry Smith /* 187490ace30eSBarry Smith Handle case where matrix is stored on disk as a dense matrix 187590ace30eSBarry Smith */ 187690ace30eSBarry Smith if (nz == MATRIX_BINARY_FORMAT_DENSE) { 1877be5d1d56SKris Buschelman ierr = MatLoad_MPIDense_DenseInFile(comm,fd,M,N,type,newmat);CHKERRQ(ierr); 18783a40ed3dSBarry Smith PetscFunctionReturn(0); 187990ace30eSBarry Smith } 188090ace30eSBarry Smith 18818965ea79SLois Curfman McInnes /* determine ownership of all rows */ 1882e44c0bd4SBarry Smith m = PetscMPIIntCast(M/size + ((M % size) > rank)); 1883e44c0bd4SBarry Smith ierr = PetscMalloc((size+2)*sizeof(PetscMPIInt),&rowners);CHKERRQ(ierr); 1884ca161407SBarry Smith ierr = MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 18858965ea79SLois Curfman McInnes rowners[0] = 0; 18868965ea79SLois Curfman McInnes for (i=2; i<=size; i++) { 18878965ea79SLois Curfman McInnes rowners[i] += rowners[i-1]; 18888965ea79SLois Curfman McInnes } 18898965ea79SLois Curfman McInnes rstart = rowners[rank]; 18908965ea79SLois Curfman McInnes rend = rowners[rank+1]; 18918965ea79SLois Curfman McInnes 18928965ea79SLois Curfman McInnes /* distribute row lengths to all processors */ 189313f74950SBarry Smith ierr = PetscMalloc(2*(rend-rstart+1)*sizeof(PetscInt),&ourlens);CHKERRQ(ierr); 18948965ea79SLois Curfman McInnes offlens = ourlens + (rend-rstart); 18958965ea79SLois Curfman McInnes if (!rank) { 189613f74950SBarry Smith ierr = PetscMalloc(M*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 18970752156aSBarry Smith ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 189813f74950SBarry Smith ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr); 18998965ea79SLois Curfman McInnes for (i=0; i<size; i++) sndcounts[i] = rowners[i+1] - rowners[i]; 19001466f1e1SBarry Smith ierr = MPI_Scatterv(rowlengths,sndcounts,rowners,MPIU_INT,ourlens,rend-rstart,MPIU_INT,0,comm);CHKERRQ(ierr); 1901606d414cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 1902ca161407SBarry Smith } else { 19031466f1e1SBarry Smith ierr = MPI_Scatterv(0,0,0,MPIU_INT,ourlens,rend-rstart,MPIU_INT,0,comm);CHKERRQ(ierr); 19048965ea79SLois Curfman McInnes } 19058965ea79SLois Curfman McInnes 19068965ea79SLois Curfman McInnes if (!rank) { 19078965ea79SLois Curfman McInnes /* calculate the number of nonzeros on each processor */ 190813f74950SBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 190913f74950SBarry Smith ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 19108965ea79SLois Curfman McInnes for (i=0; i<size; i++) { 19118965ea79SLois Curfman McInnes for (j=rowners[i]; j< rowners[i+1]; j++) { 19128965ea79SLois Curfman McInnes procsnz[i] += rowlengths[j]; 19138965ea79SLois Curfman McInnes } 19148965ea79SLois Curfman McInnes } 1915606d414cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 19168965ea79SLois Curfman McInnes 19178965ea79SLois Curfman McInnes /* determine max buffer needed and allocate it */ 19188965ea79SLois Curfman McInnes maxnz = 0; 19198965ea79SLois Curfman McInnes for (i=0; i<size; i++) { 19200452661fSBarry Smith maxnz = PetscMax(maxnz,procsnz[i]); 19218965ea79SLois Curfman McInnes } 192213f74950SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 19238965ea79SLois Curfman McInnes 19248965ea79SLois Curfman McInnes /* read in my part of the matrix column indices */ 19258965ea79SLois Curfman McInnes nz = procsnz[0]; 192613f74950SBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&mycols);CHKERRQ(ierr); 19270752156aSBarry Smith ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 19288965ea79SLois Curfman McInnes 19298965ea79SLois Curfman McInnes /* read in every one elses and ship off */ 19308965ea79SLois Curfman McInnes for (i=1; i<size; i++) { 19318965ea79SLois Curfman McInnes nz = procsnz[i]; 19320752156aSBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 193313f74950SBarry Smith ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 19348965ea79SLois Curfman McInnes } 1935606d414cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 19363a40ed3dSBarry Smith } else { 19378965ea79SLois Curfman McInnes /* determine buffer space needed for message */ 19388965ea79SLois Curfman McInnes nz = 0; 19398965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 19408965ea79SLois Curfman McInnes nz += ourlens[i]; 19418965ea79SLois Curfman McInnes } 194213f74950SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscInt),&mycols);CHKERRQ(ierr); 19438965ea79SLois Curfman McInnes 19448965ea79SLois Curfman McInnes /* receive message of column indices*/ 194513f74950SBarry Smith ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 194613f74950SBarry Smith ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 194729bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 19488965ea79SLois Curfman McInnes } 19498965ea79SLois Curfman McInnes 19508965ea79SLois Curfman McInnes /* loop over local rows, determining number of off diagonal entries */ 195113f74950SBarry Smith ierr = PetscMemzero(offlens,m*sizeof(PetscInt));CHKERRQ(ierr); 19528965ea79SLois Curfman McInnes jj = 0; 19538965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 19548965ea79SLois Curfman McInnes for (j=0; j<ourlens[i]; j++) { 19558965ea79SLois Curfman McInnes if (mycols[jj] < rstart || mycols[jj] >= rend) offlens[i]++; 19568965ea79SLois Curfman McInnes jj++; 19578965ea79SLois Curfman McInnes } 19588965ea79SLois Curfman McInnes } 19598965ea79SLois Curfman McInnes 19608965ea79SLois Curfman McInnes /* create our matrix */ 19618965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 19628965ea79SLois Curfman McInnes ourlens[i] -= offlens[i]; 19638965ea79SLois Curfman McInnes } 1964f69a0ea3SMatthew Knepley ierr = MatCreate(comm,newmat);CHKERRQ(ierr); 1965f69a0ea3SMatthew Knepley ierr = MatSetSizes(*newmat,m,PETSC_DECIDE,M,N);CHKERRQ(ierr); 1966be5d1d56SKris Buschelman ierr = MatSetType(*newmat,type);CHKERRQ(ierr); 1967878740d9SKris Buschelman ierr = MatMPIDenseSetPreallocation(*newmat,PETSC_NULL);CHKERRQ(ierr); 19688965ea79SLois Curfman McInnes A = *newmat; 19698965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 19708965ea79SLois Curfman McInnes ourlens[i] += offlens[i]; 19718965ea79SLois Curfman McInnes } 19728965ea79SLois Curfman McInnes 19738965ea79SLois Curfman McInnes if (!rank) { 197487828ca2SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&vals);CHKERRQ(ierr); 19758965ea79SLois Curfman McInnes 19768965ea79SLois Curfman McInnes /* read in my part of the matrix numerical values */ 19778965ea79SLois Curfman McInnes nz = procsnz[0]; 19780752156aSBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 19798965ea79SLois Curfman McInnes 19808965ea79SLois Curfman McInnes /* insert into matrix */ 19818965ea79SLois Curfman McInnes jj = rstart; 19828965ea79SLois Curfman McInnes smycols = mycols; 19838965ea79SLois Curfman McInnes svals = vals; 19848965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 19858965ea79SLois Curfman McInnes ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 19868965ea79SLois Curfman McInnes smycols += ourlens[i]; 19878965ea79SLois Curfman McInnes svals += ourlens[i]; 19888965ea79SLois Curfman McInnes jj++; 19898965ea79SLois Curfman McInnes } 19908965ea79SLois Curfman McInnes 19918965ea79SLois Curfman McInnes /* read in other processors and ship out */ 19928965ea79SLois Curfman McInnes for (i=1; i<size; i++) { 19938965ea79SLois Curfman McInnes nz = procsnz[i]; 19940752156aSBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 19957adad957SLisandro Dalcin ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)A)->tag,comm);CHKERRQ(ierr); 19968965ea79SLois Curfman McInnes } 1997606d414cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 19983a40ed3dSBarry Smith } else { 19998965ea79SLois Curfman McInnes /* receive numeric values */ 200084d528b1SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&vals);CHKERRQ(ierr); 20018965ea79SLois Curfman McInnes 20028965ea79SLois Curfman McInnes /* receive message of values*/ 20037adad957SLisandro Dalcin ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)A)->tag,comm,&status);CHKERRQ(ierr); 2004ca161407SBarry Smith ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 200529bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 20068965ea79SLois Curfman McInnes 20078965ea79SLois Curfman McInnes /* insert into matrix */ 20088965ea79SLois Curfman McInnes jj = rstart; 20098965ea79SLois Curfman McInnes smycols = mycols; 20108965ea79SLois Curfman McInnes svals = vals; 20118965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 20128965ea79SLois Curfman McInnes ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 20138965ea79SLois Curfman McInnes smycols += ourlens[i]; 20148965ea79SLois Curfman McInnes svals += ourlens[i]; 20158965ea79SLois Curfman McInnes jj++; 20168965ea79SLois Curfman McInnes } 20178965ea79SLois Curfman McInnes } 2018606d414cSSatish Balay ierr = PetscFree(ourlens);CHKERRQ(ierr); 2019606d414cSSatish Balay ierr = PetscFree(vals);CHKERRQ(ierr); 2020606d414cSSatish Balay ierr = PetscFree(mycols);CHKERRQ(ierr); 2021606d414cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 20228965ea79SLois Curfman McInnes 20236d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 20246d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 20253a40ed3dSBarry Smith PetscFunctionReturn(0); 20268965ea79SLois Curfman McInnes } 202790ace30eSBarry Smith 20286e4ee0c6SHong Zhang #undef __FUNCT__ 20296e4ee0c6SHong Zhang #define __FUNCT__ "MatEqual_MPIDense" 20306e4ee0c6SHong Zhang PetscErrorCode MatEqual_MPIDense(Mat A,Mat B,PetscTruth *flag) 20316e4ee0c6SHong Zhang { 20326e4ee0c6SHong Zhang Mat_MPIDense *matB = (Mat_MPIDense*)B->data,*matA = (Mat_MPIDense*)A->data; 20336e4ee0c6SHong Zhang Mat a,b; 20346e4ee0c6SHong Zhang PetscTruth flg; 20356e4ee0c6SHong Zhang PetscErrorCode ierr; 203690ace30eSBarry Smith 20376e4ee0c6SHong Zhang PetscFunctionBegin; 20386e4ee0c6SHong Zhang a = matA->A; 20396e4ee0c6SHong Zhang b = matB->A; 20406e4ee0c6SHong Zhang ierr = MatEqual(a,b,&flg);CHKERRQ(ierr); 20417adad957SLisandro Dalcin ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr); 20426e4ee0c6SHong Zhang PetscFunctionReturn(0); 20436e4ee0c6SHong Zhang } 204490ace30eSBarry Smith 204509d27a7eSBarry Smith #if defined(PETSC_HAVE_PLAPACK) 204609d27a7eSBarry Smith 204709d27a7eSBarry Smith #undef __FUNCT__ 204809d27a7eSBarry Smith #define __FUNCT__ "PetscPLAPACKFinalizePackage" 204909d27a7eSBarry Smith /*@C 205009d27a7eSBarry Smith PetscPLAPACKFinalizePackage - This function destroys everything in the Petsc interface to PLAPACK. 205109d27a7eSBarry Smith Level: developer 205209d27a7eSBarry Smith 205309d27a7eSBarry Smith .keywords: Petsc, destroy, package, PLAPACK 205409d27a7eSBarry Smith .seealso: PetscFinalize() 205509d27a7eSBarry Smith @*/ 205609d27a7eSBarry Smith PetscErrorCode PETSC_DLLEXPORT PetscPLAPACKFinalizePackage(void) 205709d27a7eSBarry Smith { 205809d27a7eSBarry Smith PetscErrorCode ierr; 205909d27a7eSBarry Smith 206009d27a7eSBarry Smith PetscFunctionBegin; 206109d27a7eSBarry Smith ierr = PLA_Finalize();CHKERRQ(ierr); 206209d27a7eSBarry Smith PetscFunctionReturn(0); 206309d27a7eSBarry Smith } 206409d27a7eSBarry Smith 206509d27a7eSBarry Smith #undef __FUNCT__ 206609d27a7eSBarry Smith #define __FUNCT__ "PetscPLAPACKInitializePackage" 206709d27a7eSBarry Smith /*@C 206809d27a7eSBarry Smith PetscPLAPACKInitializePackage - This function initializes everything in the Petsc interface to PLAPACK. It is 206909d27a7eSBarry Smith called from PetscDLLibraryRegister() when using dynamic libraries, and on the call to PetscInitialize() 207009d27a7eSBarry Smith when using static libraries. 207109d27a7eSBarry Smith 207209d27a7eSBarry Smith Input Parameter: 207309d27a7eSBarry Smith path - The dynamic library path, or PETSC_NULL 207409d27a7eSBarry Smith 207509d27a7eSBarry Smith Level: developer 207609d27a7eSBarry Smith 207709d27a7eSBarry Smith .keywords: Petsc, initialize, package, PLAPACK 207809d27a7eSBarry Smith .seealso: PetscInitializePackage(), PetscInitialize() 207909d27a7eSBarry Smith @*/ 208009d27a7eSBarry Smith PetscErrorCode PETSC_DLLEXPORT PetscPLAPACKInitializePackage(const char path[]) 208109d27a7eSBarry Smith { 208204fea9ffSBarry Smith MPI_Comm comm = PETSC_COMM_WORLD; 2083eae6fb2eSBarry Smith PetscMPIInt size; 208409d27a7eSBarry Smith PetscErrorCode ierr; 208509d27a7eSBarry Smith 208609d27a7eSBarry Smith PetscFunctionBegin; 208709d27a7eSBarry Smith if (!PLA_Initialized(PETSC_NULL)) { 208809d27a7eSBarry Smith 208909d27a7eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 209004fea9ffSBarry Smith Plapack_nprows = 1; 209104fea9ffSBarry Smith Plapack_npcols = size; 209209d27a7eSBarry Smith 2093aeccfd6fSBarry Smith ierr = PetscOptionsBegin(comm,PETSC_NULL,"PLAPACK Options","Mat");CHKERRQ(ierr); 2094aeccfd6fSBarry Smith ierr = PetscOptionsInt("-plapack_nprows","row dimension of 2D processor mesh","None",Plapack_nprows,&Plapack_nprows,PETSC_NULL);CHKERRQ(ierr); 2095aeccfd6fSBarry Smith ierr = PetscOptionsInt("-plapack_npcols","column dimension of 2D processor mesh","None",Plapack_npcols,&Plapack_npcols,PETSC_NULL);CHKERRQ(ierr); 209679b0a62dSBarry Smith #if defined(PETSC_USE_DEBUG) 209779b0a62dSBarry Smith Plapack_ierror = 3; 209879b0a62dSBarry Smith #else 209979b0a62dSBarry Smith Plapack_ierror = 0; 210079b0a62dSBarry Smith #endif 2101eae6fb2eSBarry Smith ierr = PetscOptionsInt("-plapack_ckerror","error checking flag","None",Plapack_ierror,&Plapack_ierror,PETSC_NULL);CHKERRQ(ierr); 2102eae6fb2eSBarry Smith if (Plapack_ierror){ 2103eae6fb2eSBarry Smith ierr = PLA_Set_error_checking(Plapack_ierror,PETSC_TRUE,PETSC_TRUE,PETSC_FALSE );CHKERRQ(ierr); 2104aeccfd6fSBarry Smith } else { 2105eae6fb2eSBarry Smith ierr = PLA_Set_error_checking(Plapack_ierror,PETSC_FALSE,PETSC_FALSE,PETSC_FALSE );CHKERRQ(ierr); 2106aeccfd6fSBarry Smith } 2107aeccfd6fSBarry Smith 2108eae6fb2eSBarry Smith Plapack_nb_alg = 0; 210979b0a62dSBarry Smith ierr = PetscOptionsInt("-plapack_nb_alg","algorithmic block size","None",Plapack_nb_alg,&Plapack_nb_alg,PETSC_NULL);CHKERRQ(ierr); 2110eae6fb2eSBarry Smith if (Plapack_nb_alg) { 2111eae6fb2eSBarry Smith ierr = pla_Environ_set_nb_alg (PLA_OP_ALL_ALG,Plapack_nb_alg);CHKERRQ(ierr); 2112aeccfd6fSBarry Smith } 2113aeccfd6fSBarry Smith PetscOptionsEnd(); 2114aeccfd6fSBarry Smith 211504fea9ffSBarry Smith ierr = PLA_Comm_1D_to_2D(comm,Plapack_nprows,Plapack_npcols,&Plapack_comm_2d);CHKERRQ(ierr); 211604fea9ffSBarry Smith ierr = PLA_Init(Plapack_comm_2d);CHKERRQ(ierr); 211709d27a7eSBarry Smith ierr = PetscRegisterFinalize(PetscPLAPACKFinalizePackage);CHKERRQ(ierr); 211809d27a7eSBarry Smith } 211909d27a7eSBarry Smith PetscFunctionReturn(0); 212009d27a7eSBarry Smith } 212190ace30eSBarry Smith 212290ace30eSBarry Smith 212309d27a7eSBarry Smith #endif 2124