xref: /petsc/src/mat/impls/dense/mpi/mpidense.c (revision 4aa34b0a1e5612e2a3325393c11cde8cb5200435)
1be1d678aSKris Buschelman #define PETSCMAT_DLL
2be1d678aSKris Buschelman 
3ed3cc1f0SBarry Smith /*
4ed3cc1f0SBarry Smith    Basic functions for basic parallel dense matrices.
5ed3cc1f0SBarry Smith */
6ed3cc1f0SBarry Smith 
704fea9ffSBarry Smith 
889ac3759SBarry Smith #include "src/mat/impls/dense/mpi/mpidense.h"    /*I   "petscmat.h"  I*/
9eae6fb2eSBarry Smith #if defined(PETSC_HAVE_PLAPACK)
10eae6fb2eSBarry Smith static PetscMPIInt Plapack_nprows,Plapack_npcols,Plapack_ierror,Plapack_nb_alg;
11eae6fb2eSBarry Smith static MPI_Comm Plapack_comm_2d;
12eae6fb2eSBarry Smith #endif
138965ea79SLois Curfman McInnes 
14ba8c8a56SBarry Smith #undef __FUNCT__
15ab92ecdeSBarry Smith #define __FUNCT__ "MatDenseGetLocalMatrix"
16ab92ecdeSBarry Smith /*@
17ab92ecdeSBarry Smith 
18ab92ecdeSBarry Smith       MatDenseGetLocalMatrix - For a MATMPIDENSE or MATSEQDENSE matrix returns the sequential
19ab92ecdeSBarry Smith               matrix that represents the operator. For sequential matrices it returns itself.
20ab92ecdeSBarry Smith 
21ab92ecdeSBarry Smith     Input Parameter:
22ab92ecdeSBarry Smith .      A - the Seq or MPI dense matrix
23ab92ecdeSBarry Smith 
24ab92ecdeSBarry Smith     Output Parameter:
25ab92ecdeSBarry Smith .      B - the inner matrix
26ab92ecdeSBarry Smith 
278e6c10adSSatish Balay     Level: intermediate
288e6c10adSSatish Balay 
29ab92ecdeSBarry Smith @*/
30ab92ecdeSBarry Smith PetscErrorCode MatDenseGetLocalMatrix(Mat A,Mat *B)
31ab92ecdeSBarry Smith {
32ab92ecdeSBarry Smith   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
33ab92ecdeSBarry Smith   PetscErrorCode ierr;
34ab92ecdeSBarry Smith   PetscTruth     flg;
35ab92ecdeSBarry Smith 
36ab92ecdeSBarry Smith   PetscFunctionBegin;
37ab92ecdeSBarry Smith   ierr = PetscTypeCompare((PetscObject)A,MATMPIDENSE,&flg);CHKERRQ(ierr);
38ab92ecdeSBarry Smith   if (flg) {
39ab92ecdeSBarry Smith     *B = mat->A;
40ab92ecdeSBarry Smith   } else {
41ab92ecdeSBarry Smith     *B = A;
42ab92ecdeSBarry Smith   }
43ab92ecdeSBarry Smith   PetscFunctionReturn(0);
44ab92ecdeSBarry Smith }
45ab92ecdeSBarry Smith 
46ab92ecdeSBarry Smith #undef __FUNCT__
47ba8c8a56SBarry Smith #define __FUNCT__ "MatGetRow_MPIDense"
48ba8c8a56SBarry Smith PetscErrorCode MatGetRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
49ba8c8a56SBarry Smith {
50ba8c8a56SBarry Smith   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
51ba8c8a56SBarry Smith   PetscErrorCode ierr;
52899cda47SBarry Smith   PetscInt       lrow,rstart = A->rmap.rstart,rend = A->rmap.rend;
53ba8c8a56SBarry Smith 
54ba8c8a56SBarry Smith   PetscFunctionBegin;
55ba8c8a56SBarry Smith   if (row < rstart || row >= rend) SETERRQ(PETSC_ERR_SUP,"only local rows")
56ba8c8a56SBarry Smith   lrow = row - rstart;
57ba8c8a56SBarry Smith   ierr = MatGetRow(mat->A,lrow,nz,(const PetscInt **)idx,(const PetscScalar **)v);CHKERRQ(ierr);
58ba8c8a56SBarry Smith   PetscFunctionReturn(0);
59ba8c8a56SBarry Smith }
60ba8c8a56SBarry Smith 
61ba8c8a56SBarry Smith #undef __FUNCT__
62ba8c8a56SBarry Smith #define __FUNCT__ "MatRestoreRow_MPIDense"
63ba8c8a56SBarry Smith PetscErrorCode MatRestoreRow_MPIDense(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
64ba8c8a56SBarry Smith {
65ba8c8a56SBarry Smith   PetscErrorCode ierr;
66ba8c8a56SBarry Smith 
67ba8c8a56SBarry Smith   PetscFunctionBegin;
68ba8c8a56SBarry Smith   if (idx) {ierr = PetscFree(*idx);CHKERRQ(ierr);}
69ba8c8a56SBarry Smith   if (v) {ierr = PetscFree(*v);CHKERRQ(ierr);}
70ba8c8a56SBarry Smith   PetscFunctionReturn(0);
71ba8c8a56SBarry Smith }
72ba8c8a56SBarry Smith 
730de54da6SSatish Balay EXTERN_C_BEGIN
744a2ae208SSatish Balay #undef __FUNCT__
754a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIDense"
76be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPIDense(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *B)
770de54da6SSatish Balay {
780de54da6SSatish Balay   Mat_MPIDense   *mdn = (Mat_MPIDense*)A->data;
796849ba73SBarry Smith   PetscErrorCode ierr;
80899cda47SBarry Smith   PetscInt       m = A->rmap.n,rstart = A->rmap.rstart;
8187828ca2SBarry Smith   PetscScalar    *array;
820de54da6SSatish Balay   MPI_Comm       comm;
830de54da6SSatish Balay 
840de54da6SSatish Balay   PetscFunctionBegin;
85899cda47SBarry Smith   if (A->rmap.N != A->cmap.N) SETERRQ(PETSC_ERR_SUP,"Only square matrices supported.");
860de54da6SSatish Balay 
870de54da6SSatish Balay   /* The reuse aspect is not implemented efficiently */
880de54da6SSatish Balay   if (reuse) { ierr = MatDestroy(*B);CHKERRQ(ierr);}
890de54da6SSatish Balay 
900de54da6SSatish Balay   ierr = PetscObjectGetComm((PetscObject)(mdn->A),&comm);CHKERRQ(ierr);
910de54da6SSatish Balay   ierr = MatGetArray(mdn->A,&array);CHKERRQ(ierr);
92f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,B);CHKERRQ(ierr);
93f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*B,m,m,m,m);CHKERRQ(ierr);
947adad957SLisandro Dalcin   ierr = MatSetType(*B,((PetscObject)mdn->A)->type_name);CHKERRQ(ierr);
955c5985e7SKris Buschelman   ierr = MatSeqDenseSetPreallocation(*B,array+m*rstart);CHKERRQ(ierr);
960de54da6SSatish Balay   ierr = MatRestoreArray(mdn->A,&array);CHKERRQ(ierr);
970de54da6SSatish Balay   ierr = MatAssemblyBegin(*B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
980de54da6SSatish Balay   ierr = MatAssemblyEnd(*B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
990de54da6SSatish Balay 
1000de54da6SSatish Balay   *iscopy = PETSC_TRUE;
1010de54da6SSatish Balay   PetscFunctionReturn(0);
1020de54da6SSatish Balay }
1030de54da6SSatish Balay EXTERN_C_END
1040de54da6SSatish Balay 
1054a2ae208SSatish Balay #undef __FUNCT__
1064a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIDense"
10713f74950SBarry Smith PetscErrorCode MatSetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],const PetscScalar v[],InsertMode addv)
1088965ea79SLois Curfman McInnes {
10939b7565bSBarry Smith   Mat_MPIDense   *A = (Mat_MPIDense*)mat->data;
110dfbe8321SBarry Smith   PetscErrorCode ierr;
111899cda47SBarry Smith   PetscInt       i,j,rstart = mat->rmap.rstart,rend = mat->rmap.rend,row;
112273d9f13SBarry Smith   PetscTruth     roworiented = A->roworiented;
1138965ea79SLois Curfman McInnes 
1143a40ed3dSBarry Smith   PetscFunctionBegin;
1158965ea79SLois Curfman McInnes   for (i=0; i<m; i++) {
1165ef9f2a5SBarry Smith     if (idxm[i] < 0) continue;
117899cda47SBarry Smith     if (idxm[i] >= mat->rmap.N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large");
1188965ea79SLois Curfman McInnes     if (idxm[i] >= rstart && idxm[i] < rend) {
1198965ea79SLois Curfman McInnes       row = idxm[i] - rstart;
12039b7565bSBarry Smith       if (roworiented) {
12139b7565bSBarry Smith         ierr = MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv);CHKERRQ(ierr);
1223a40ed3dSBarry Smith       } else {
1238965ea79SLois Curfman McInnes         for (j=0; j<n; j++) {
1245ef9f2a5SBarry Smith           if (idxn[j] < 0) continue;
125899cda47SBarry Smith           if (idxn[j] >= mat->cmap.N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Column too large");
12639b7565bSBarry Smith           ierr = MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv);CHKERRQ(ierr);
12739b7565bSBarry Smith         }
1288965ea79SLois Curfman McInnes       }
1293a40ed3dSBarry Smith     } else {
1303782ba37SSatish Balay       if (!A->donotstash) {
13139b7565bSBarry Smith         if (roworiented) {
1328798bf22SSatish Balay           ierr = MatStashValuesRow_Private(&mat->stash,idxm[i],n,idxn,v+i*n);CHKERRQ(ierr);
133d36fbae8SSatish Balay         } else {
1348798bf22SSatish Balay           ierr = MatStashValuesCol_Private(&mat->stash,idxm[i],n,idxn,v+i,m);CHKERRQ(ierr);
13539b7565bSBarry Smith         }
136b49de8d1SLois Curfman McInnes       }
137b49de8d1SLois Curfman McInnes     }
1383782ba37SSatish Balay   }
1393a40ed3dSBarry Smith   PetscFunctionReturn(0);
140b49de8d1SLois Curfman McInnes }
141b49de8d1SLois Curfman McInnes 
1424a2ae208SSatish Balay #undef __FUNCT__
1434a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIDense"
14413f74950SBarry Smith PetscErrorCode MatGetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
145b49de8d1SLois Curfman McInnes {
146b49de8d1SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
147dfbe8321SBarry Smith   PetscErrorCode ierr;
148899cda47SBarry Smith   PetscInt       i,j,rstart = mat->rmap.rstart,rend = mat->rmap.rend,row;
149b49de8d1SLois Curfman McInnes 
1503a40ed3dSBarry Smith   PetscFunctionBegin;
151b49de8d1SLois Curfman McInnes   for (i=0; i<m; i++) {
15297e567efSBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); */
153899cda47SBarry Smith     if (idxm[i] >= mat->rmap.N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large");
154b49de8d1SLois Curfman McInnes     if (idxm[i] >= rstart && idxm[i] < rend) {
155b49de8d1SLois Curfman McInnes       row = idxm[i] - rstart;
156b49de8d1SLois Curfman McInnes       for (j=0; j<n; j++) {
15797e567efSBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); */
158899cda47SBarry Smith         if (idxn[j] >= mat->cmap.N) {
15929bbc08cSBarry Smith           SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Column too large");
160a8c6a408SBarry Smith         }
161b49de8d1SLois Curfman McInnes         ierr = MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j);CHKERRQ(ierr);
162b49de8d1SLois Curfman McInnes       }
163a8c6a408SBarry Smith     } else {
16429bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Only local values currently supported");
1658965ea79SLois Curfman McInnes     }
1668965ea79SLois Curfman McInnes   }
1673a40ed3dSBarry Smith   PetscFunctionReturn(0);
1688965ea79SLois Curfman McInnes }
1698965ea79SLois Curfman McInnes 
1704a2ae208SSatish Balay #undef __FUNCT__
1714a2ae208SSatish Balay #define __FUNCT__ "MatGetArray_MPIDense"
172dfbe8321SBarry Smith PetscErrorCode MatGetArray_MPIDense(Mat A,PetscScalar *array[])
173ff14e315SSatish Balay {
174ff14e315SSatish Balay   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
175dfbe8321SBarry Smith   PetscErrorCode ierr;
176ff14e315SSatish Balay 
1773a40ed3dSBarry Smith   PetscFunctionBegin;
178ff14e315SSatish Balay   ierr = MatGetArray(a->A,array);CHKERRQ(ierr);
1793a40ed3dSBarry Smith   PetscFunctionReturn(0);
180ff14e315SSatish Balay }
181ff14e315SSatish Balay 
1824a2ae208SSatish Balay #undef __FUNCT__
1834a2ae208SSatish Balay #define __FUNCT__ "MatGetSubMatrix_MPIDense"
18413f74950SBarry Smith static PetscErrorCode MatGetSubMatrix_MPIDense(Mat A,IS isrow,IS iscol,PetscInt cs,MatReuse scall,Mat *B)
185ca3fa75bSLois Curfman McInnes {
186ca3fa75bSLois Curfman McInnes   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data,*newmatd;
187ca3fa75bSLois Curfman McInnes   Mat_SeqDense   *lmat = (Mat_SeqDense*)mat->A->data;
1886849ba73SBarry Smith   PetscErrorCode ierr;
18913f74950SBarry Smith   PetscInt       i,j,*irow,*icol,rstart,rend,nrows,ncols,nlrows,nlcols;
19087828ca2SBarry Smith   PetscScalar    *av,*bv,*v = lmat->v;
191ca3fa75bSLois Curfman McInnes   Mat            newmat;
192ca3fa75bSLois Curfman McInnes 
193ca3fa75bSLois Curfman McInnes   PetscFunctionBegin;
194ca3fa75bSLois Curfman McInnes   ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr);
195ca3fa75bSLois Curfman McInnes   ierr = ISGetIndices(iscol,&icol);CHKERRQ(ierr);
196b9b97703SBarry Smith   ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr);
197b9b97703SBarry Smith   ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr);
198ca3fa75bSLois Curfman McInnes 
199ca3fa75bSLois Curfman McInnes   /* No parallel redistribution currently supported! Should really check each index set
2007eba5e9cSLois Curfman McInnes      to comfirm that it is OK.  ... Currently supports only submatrix same partitioning as
2017eba5e9cSLois Curfman McInnes      original matrix! */
202ca3fa75bSLois Curfman McInnes 
203ca3fa75bSLois Curfman McInnes   ierr = MatGetLocalSize(A,&nlrows,&nlcols);CHKERRQ(ierr);
2047eba5e9cSLois Curfman McInnes   ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr);
205ca3fa75bSLois Curfman McInnes 
206ca3fa75bSLois Curfman McInnes   /* Check submatrix call */
207ca3fa75bSLois Curfman McInnes   if (scall == MAT_REUSE_MATRIX) {
20829bbc08cSBarry Smith     /* SETERRQ(PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */
2097eba5e9cSLois Curfman McInnes     /* Really need to test rows and column sizes! */
210ca3fa75bSLois Curfman McInnes     newmat = *B;
211ca3fa75bSLois Curfman McInnes   } else {
212ca3fa75bSLois Curfman McInnes     /* Create and fill new matrix */
2137adad957SLisandro Dalcin     ierr = MatCreate(((PetscObject)A)->comm,&newmat);CHKERRQ(ierr);
214f69a0ea3SMatthew Knepley     ierr = MatSetSizes(newmat,nrows,cs,PETSC_DECIDE,ncols);CHKERRQ(ierr);
2157adad957SLisandro Dalcin     ierr = MatSetType(newmat,((PetscObject)A)->type_name);CHKERRQ(ierr);
216878740d9SKris Buschelman     ierr = MatMPIDenseSetPreallocation(newmat,PETSC_NULL);CHKERRQ(ierr);
217ca3fa75bSLois Curfman McInnes   }
218ca3fa75bSLois Curfman McInnes 
219ca3fa75bSLois Curfman McInnes   /* Now extract the data pointers and do the copy, column at a time */
220ca3fa75bSLois Curfman McInnes   newmatd = (Mat_MPIDense*)newmat->data;
221ca3fa75bSLois Curfman McInnes   bv      = ((Mat_SeqDense *)newmatd->A->data)->v;
222ca3fa75bSLois Curfman McInnes 
223ca3fa75bSLois Curfman McInnes   for (i=0; i<ncols; i++) {
224ca3fa75bSLois Curfman McInnes     av = v + nlrows*icol[i];
225ca3fa75bSLois Curfman McInnes     for (j=0; j<nrows; j++) {
2267eba5e9cSLois Curfman McInnes       *bv++ = av[irow[j] - rstart];
227ca3fa75bSLois Curfman McInnes     }
228ca3fa75bSLois Curfman McInnes   }
229ca3fa75bSLois Curfman McInnes 
230ca3fa75bSLois Curfman McInnes   /* Assemble the matrices so that the correct flags are set */
231ca3fa75bSLois Curfman McInnes   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
232ca3fa75bSLois Curfman McInnes   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
233ca3fa75bSLois Curfman McInnes 
234ca3fa75bSLois Curfman McInnes   /* Free work space */
235ca3fa75bSLois Curfman McInnes   ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr);
236ca3fa75bSLois Curfman McInnes   ierr = ISRestoreIndices(iscol,&icol);CHKERRQ(ierr);
237ca3fa75bSLois Curfman McInnes   *B = newmat;
238ca3fa75bSLois Curfman McInnes   PetscFunctionReturn(0);
239ca3fa75bSLois Curfman McInnes }
240ca3fa75bSLois Curfman McInnes 
2414a2ae208SSatish Balay #undef __FUNCT__
2424a2ae208SSatish Balay #define __FUNCT__ "MatRestoreArray_MPIDense"
243dfbe8321SBarry Smith PetscErrorCode MatRestoreArray_MPIDense(Mat A,PetscScalar *array[])
244ff14e315SSatish Balay {
2453a40ed3dSBarry Smith   PetscFunctionBegin;
2463a40ed3dSBarry Smith   PetscFunctionReturn(0);
247ff14e315SSatish Balay }
248ff14e315SSatish Balay 
2494a2ae208SSatish Balay #undef __FUNCT__
2504a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIDense"
251dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode)
2528965ea79SLois Curfman McInnes {
25339ddd567SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
2547adad957SLisandro Dalcin   MPI_Comm       comm = ((PetscObject)mat)->comm;
255dfbe8321SBarry Smith   PetscErrorCode ierr;
25613f74950SBarry Smith   PetscInt       nstash,reallocs;
2578965ea79SLois Curfman McInnes   InsertMode     addv;
2588965ea79SLois Curfman McInnes 
2593a40ed3dSBarry Smith   PetscFunctionBegin;
2608965ea79SLois Curfman McInnes   /* make sure all processors are either in INSERTMODE or ADDMODE */
261ca161407SBarry Smith   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,comm);CHKERRQ(ierr);
2627056b6fcSBarry Smith   if (addv == (ADD_VALUES|INSERT_VALUES)) {
26329bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Cannot mix adds/inserts on different procs");
2648965ea79SLois Curfman McInnes   }
265e0fa3b82SLois Curfman McInnes   mat->insertmode = addv; /* in case this processor had no cache */
2668965ea79SLois Curfman McInnes 
2671e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap.range);CHKERRQ(ierr);
2688798bf22SSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
269ae15b995SBarry Smith   ierr = PetscInfo2(mdn->A,"Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
2703a40ed3dSBarry Smith   PetscFunctionReturn(0);
2718965ea79SLois Curfman McInnes }
2728965ea79SLois Curfman McInnes 
2734a2ae208SSatish Balay #undef __FUNCT__
2744a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIDense"
275dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode)
2768965ea79SLois Curfman McInnes {
27739ddd567SLois Curfman McInnes   Mat_MPIDense    *mdn=(Mat_MPIDense*)mat->data;
2786849ba73SBarry Smith   PetscErrorCode  ierr;
27913f74950SBarry Smith   PetscInt        i,*row,*col,flg,j,rstart,ncols;
28013f74950SBarry Smith   PetscMPIInt     n;
28187828ca2SBarry Smith   PetscScalar     *val;
282e0fa3b82SLois Curfman McInnes   InsertMode      addv=mat->insertmode;
2838965ea79SLois Curfman McInnes 
2843a40ed3dSBarry Smith   PetscFunctionBegin;
2858965ea79SLois Curfman McInnes   /*  wait on receives */
2867ef1d9bdSSatish Balay   while (1) {
2878798bf22SSatish Balay     ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
2887ef1d9bdSSatish Balay     if (!flg) break;
2898965ea79SLois Curfman McInnes 
2907ef1d9bdSSatish Balay     for (i=0; i<n;) {
2917ef1d9bdSSatish Balay       /* Now identify the consecutive vals belonging to the same row */
2927ef1d9bdSSatish Balay       for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
2937ef1d9bdSSatish Balay       if (j < n) ncols = j-i;
2947ef1d9bdSSatish Balay       else       ncols = n-i;
2957ef1d9bdSSatish Balay       /* Now assemble all these values with a single function call */
2967ef1d9bdSSatish Balay       ierr = MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
2977ef1d9bdSSatish Balay       i = j;
2988965ea79SLois Curfman McInnes     }
2997ef1d9bdSSatish Balay   }
3008798bf22SSatish Balay   ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
3018965ea79SLois Curfman McInnes 
30239ddd567SLois Curfman McInnes   ierr = MatAssemblyBegin(mdn->A,mode);CHKERRQ(ierr);
30339ddd567SLois Curfman McInnes   ierr = MatAssemblyEnd(mdn->A,mode);CHKERRQ(ierr);
3048965ea79SLois Curfman McInnes 
3056d4a8577SBarry Smith   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
30639ddd567SLois Curfman McInnes     ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr);
3078965ea79SLois Curfman McInnes   }
3083a40ed3dSBarry Smith   PetscFunctionReturn(0);
3098965ea79SLois Curfman McInnes }
3108965ea79SLois Curfman McInnes 
3114a2ae208SSatish Balay #undef __FUNCT__
3124a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIDense"
313dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIDense(Mat A)
3148965ea79SLois Curfman McInnes {
315dfbe8321SBarry Smith   PetscErrorCode ierr;
31639ddd567SLois Curfman McInnes   Mat_MPIDense   *l = (Mat_MPIDense*)A->data;
3173a40ed3dSBarry Smith 
3183a40ed3dSBarry Smith   PetscFunctionBegin;
3193a40ed3dSBarry Smith   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
3203a40ed3dSBarry Smith   PetscFunctionReturn(0);
3218965ea79SLois Curfman McInnes }
3228965ea79SLois Curfman McInnes 
3238965ea79SLois Curfman McInnes /* the code does not do the diagonal entries correctly unless the
3248965ea79SLois Curfman McInnes    matrix is square and the column and row owerships are identical.
3258965ea79SLois Curfman McInnes    This is a BUG. The only way to fix it seems to be to access
3263501a2bdSLois Curfman McInnes    mdn->A and mdn->B directly and not through the MatZeroRows()
3278965ea79SLois Curfman McInnes    routine.
3288965ea79SLois Curfman McInnes */
3294a2ae208SSatish Balay #undef __FUNCT__
3304a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIDense"
331f4df32b1SMatthew Knepley PetscErrorCode MatZeroRows_MPIDense(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag)
3328965ea79SLois Curfman McInnes {
33339ddd567SLois Curfman McInnes   Mat_MPIDense   *l = (Mat_MPIDense*)A->data;
3346849ba73SBarry Smith   PetscErrorCode ierr;
335899cda47SBarry Smith   PetscInt       i,*owners = A->rmap.range;
33613f74950SBarry Smith   PetscInt       *nprocs,j,idx,nsends;
33713f74950SBarry Smith   PetscInt       nmax,*svalues,*starts,*owner,nrecvs;
3387adad957SLisandro Dalcin   PetscInt       *rvalues,tag = ((PetscObject)A)->tag,count,base,slen,*source;
33913f74950SBarry Smith   PetscInt       *lens,*lrows,*values;
34013f74950SBarry Smith   PetscMPIInt    n,imdex,rank = l->rank,size = l->size;
3417adad957SLisandro Dalcin   MPI_Comm       comm = ((PetscObject)A)->comm;
3428965ea79SLois Curfman McInnes   MPI_Request    *send_waits,*recv_waits;
3438965ea79SLois Curfman McInnes   MPI_Status     recv_status,*send_status;
34435d8aa7fSBarry Smith   PetscTruth     found;
3458965ea79SLois Curfman McInnes 
3463a40ed3dSBarry Smith   PetscFunctionBegin;
3478965ea79SLois Curfman McInnes   /*  first count number of contributors to each processor */
34813f74950SBarry Smith   ierr  = PetscMalloc(2*size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr);
34913f74950SBarry Smith   ierr  = PetscMemzero(nprocs,2*size*sizeof(PetscInt));CHKERRQ(ierr);
35013f74950SBarry Smith   ierr  = PetscMalloc((N+1)*sizeof(PetscInt),&owner);CHKERRQ(ierr); /* see note*/
3518965ea79SLois Curfman McInnes   for (i=0; i<N; i++) {
3528965ea79SLois Curfman McInnes     idx = rows[i];
35335d8aa7fSBarry Smith     found = PETSC_FALSE;
3548965ea79SLois Curfman McInnes     for (j=0; j<size; j++) {
3558965ea79SLois Curfman McInnes       if (idx >= owners[j] && idx < owners[j+1]) {
356c1dc657dSBarry Smith         nprocs[2*j]++; nprocs[2*j+1] = 1; owner[i] = j; found = PETSC_TRUE; break;
3578965ea79SLois Curfman McInnes       }
3588965ea79SLois Curfman McInnes     }
35929bbc08cSBarry Smith     if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range");
3608965ea79SLois Curfman McInnes   }
361c1dc657dSBarry Smith   nsends = 0;  for (i=0; i<size; i++) { nsends += nprocs[2*i+1];}
3628965ea79SLois Curfman McInnes 
3638965ea79SLois Curfman McInnes   /* inform other processors of number of messages and max length*/
364c1dc657dSBarry Smith   ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr);
3658965ea79SLois Curfman McInnes 
3668965ea79SLois Curfman McInnes   /* post receives:   */
36713f74950SBarry Smith   ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(PetscInt),&rvalues);CHKERRQ(ierr);
368b0a32e0cSBarry Smith   ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr);
3698965ea79SLois Curfman McInnes   for (i=0; i<nrecvs; i++) {
37013f74950SBarry Smith     ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr);
3718965ea79SLois Curfman McInnes   }
3728965ea79SLois Curfman McInnes 
3738965ea79SLois Curfman McInnes   /* do sends:
3748965ea79SLois Curfman McInnes       1) starts[i] gives the starting index in svalues for stuff going to
3758965ea79SLois Curfman McInnes          the ith processor
3768965ea79SLois Curfman McInnes   */
37713f74950SBarry Smith   ierr = PetscMalloc((N+1)*sizeof(PetscInt),&svalues);CHKERRQ(ierr);
378b0a32e0cSBarry Smith   ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr);
37913f74950SBarry Smith   ierr = PetscMalloc((size+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr);
3808965ea79SLois Curfman McInnes   starts[0]  = 0;
381c1dc657dSBarry Smith   for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];}
3828965ea79SLois Curfman McInnes   for (i=0; i<N; i++) {
3838965ea79SLois Curfman McInnes     svalues[starts[owner[i]]++] = rows[i];
3848965ea79SLois Curfman McInnes   }
3858965ea79SLois Curfman McInnes 
3868965ea79SLois Curfman McInnes   starts[0] = 0;
387c1dc657dSBarry Smith   for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];}
3888965ea79SLois Curfman McInnes   count = 0;
3898965ea79SLois Curfman McInnes   for (i=0; i<size; i++) {
390c1dc657dSBarry Smith     if (nprocs[2*i+1]) {
39113f74950SBarry Smith       ierr = MPI_Isend(svalues+starts[i],nprocs[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr);
3928965ea79SLois Curfman McInnes     }
3938965ea79SLois Curfman McInnes   }
394606d414cSSatish Balay   ierr = PetscFree(starts);CHKERRQ(ierr);
3958965ea79SLois Curfman McInnes 
3968965ea79SLois Curfman McInnes   base = owners[rank];
3978965ea79SLois Curfman McInnes 
3988965ea79SLois Curfman McInnes   /*  wait on receives */
39913f74950SBarry Smith   ierr   = PetscMalloc(2*(nrecvs+1)*sizeof(PetscInt),&lens);CHKERRQ(ierr);
4008965ea79SLois Curfman McInnes   source = lens + nrecvs;
4018965ea79SLois Curfman McInnes   count  = nrecvs; slen = 0;
4028965ea79SLois Curfman McInnes   while (count) {
403ca161407SBarry Smith     ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr);
4048965ea79SLois Curfman McInnes     /* unpack receives into our local space */
40513f74950SBarry Smith     ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr);
4068965ea79SLois Curfman McInnes     source[imdex]  = recv_status.MPI_SOURCE;
4078965ea79SLois Curfman McInnes     lens[imdex]    = n;
4088965ea79SLois Curfman McInnes     slen += n;
4098965ea79SLois Curfman McInnes     count--;
4108965ea79SLois Curfman McInnes   }
411606d414cSSatish Balay   ierr = PetscFree(recv_waits);CHKERRQ(ierr);
4128965ea79SLois Curfman McInnes 
4138965ea79SLois Curfman McInnes   /* move the data into the send scatter */
41413f74950SBarry Smith   ierr = PetscMalloc((slen+1)*sizeof(PetscInt),&lrows);CHKERRQ(ierr);
4158965ea79SLois Curfman McInnes   count = 0;
4168965ea79SLois Curfman McInnes   for (i=0; i<nrecvs; i++) {
4178965ea79SLois Curfman McInnes     values = rvalues + i*nmax;
4188965ea79SLois Curfman McInnes     for (j=0; j<lens[i]; j++) {
4198965ea79SLois Curfman McInnes       lrows[count++] = values[j] - base;
4208965ea79SLois Curfman McInnes     }
4218965ea79SLois Curfman McInnes   }
422606d414cSSatish Balay   ierr = PetscFree(rvalues);CHKERRQ(ierr);
423606d414cSSatish Balay   ierr = PetscFree(lens);CHKERRQ(ierr);
424606d414cSSatish Balay   ierr = PetscFree(owner);CHKERRQ(ierr);
425606d414cSSatish Balay   ierr = PetscFree(nprocs);CHKERRQ(ierr);
4268965ea79SLois Curfman McInnes 
4278965ea79SLois Curfman McInnes   /* actually zap the local rows */
428f4df32b1SMatthew Knepley   ierr = MatZeroRows(l->A,slen,lrows,diag);CHKERRQ(ierr);
429606d414cSSatish Balay   ierr = PetscFree(lrows);CHKERRQ(ierr);
4308965ea79SLois Curfman McInnes 
4318965ea79SLois Curfman McInnes   /* wait on sends */
4328965ea79SLois Curfman McInnes   if (nsends) {
433b0a32e0cSBarry Smith     ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr);
434ca161407SBarry Smith     ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr);
435606d414cSSatish Balay     ierr = PetscFree(send_status);CHKERRQ(ierr);
4368965ea79SLois Curfman McInnes   }
437606d414cSSatish Balay   ierr = PetscFree(send_waits);CHKERRQ(ierr);
438606d414cSSatish Balay   ierr = PetscFree(svalues);CHKERRQ(ierr);
4398965ea79SLois Curfman McInnes 
4403a40ed3dSBarry Smith   PetscFunctionReturn(0);
4418965ea79SLois Curfman McInnes }
4428965ea79SLois Curfman McInnes 
4434a2ae208SSatish Balay #undef __FUNCT__
4444a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIDense"
445dfbe8321SBarry Smith PetscErrorCode MatMult_MPIDense(Mat mat,Vec xx,Vec yy)
4468965ea79SLois Curfman McInnes {
44739ddd567SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
448dfbe8321SBarry Smith   PetscErrorCode ierr;
449c456f294SBarry Smith 
4503a40ed3dSBarry Smith   PetscFunctionBegin;
451ca9f406cSSatish Balay   ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
452ca9f406cSSatish Balay   ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
45344cd7ae7SLois Curfman McInnes   ierr = MatMult_SeqDense(mdn->A,mdn->lvec,yy);CHKERRQ(ierr);
4543a40ed3dSBarry Smith   PetscFunctionReturn(0);
4558965ea79SLois Curfman McInnes }
4568965ea79SLois Curfman McInnes 
4574a2ae208SSatish Balay #undef __FUNCT__
4584a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIDense"
459dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz)
4608965ea79SLois Curfman McInnes {
46139ddd567SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
462dfbe8321SBarry Smith   PetscErrorCode ierr;
463c456f294SBarry Smith 
4643a40ed3dSBarry Smith   PetscFunctionBegin;
465ca9f406cSSatish Balay   ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
466ca9f406cSSatish Balay   ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
46744cd7ae7SLois Curfman McInnes   ierr = MatMultAdd_SeqDense(mdn->A,mdn->lvec,yy,zz);CHKERRQ(ierr);
4683a40ed3dSBarry Smith   PetscFunctionReturn(0);
4698965ea79SLois Curfman McInnes }
4708965ea79SLois Curfman McInnes 
4714a2ae208SSatish Balay #undef __FUNCT__
4724a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIDense"
473dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIDense(Mat A,Vec xx,Vec yy)
474096963f5SLois Curfman McInnes {
475096963f5SLois Curfman McInnes   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
476dfbe8321SBarry Smith   PetscErrorCode ierr;
47787828ca2SBarry Smith   PetscScalar    zero = 0.0;
478096963f5SLois Curfman McInnes 
4793a40ed3dSBarry Smith   PetscFunctionBegin;
4802dcb1b2aSMatthew Knepley   ierr = VecSet(yy,zero);CHKERRQ(ierr);
4817c922b88SBarry Smith   ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr);
482ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
483ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
4843a40ed3dSBarry Smith   PetscFunctionReturn(0);
485096963f5SLois Curfman McInnes }
486096963f5SLois Curfman McInnes 
4874a2ae208SSatish Balay #undef __FUNCT__
4884a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIDense"
489dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz)
490096963f5SLois Curfman McInnes {
491096963f5SLois Curfman McInnes   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
492dfbe8321SBarry Smith   PetscErrorCode ierr;
493096963f5SLois Curfman McInnes 
4943a40ed3dSBarry Smith   PetscFunctionBegin;
4953501a2bdSLois Curfman McInnes   ierr = VecCopy(yy,zz);CHKERRQ(ierr);
4967c922b88SBarry Smith   ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr);
497ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
498ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
4993a40ed3dSBarry Smith   PetscFunctionReturn(0);
500096963f5SLois Curfman McInnes }
501096963f5SLois Curfman McInnes 
5024a2ae208SSatish Balay #undef __FUNCT__
5034a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIDense"
504dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIDense(Mat A,Vec v)
5058965ea79SLois Curfman McInnes {
50639ddd567SLois Curfman McInnes   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
507096963f5SLois Curfman McInnes   Mat_SeqDense   *aloc = (Mat_SeqDense*)a->A->data;
508dfbe8321SBarry Smith   PetscErrorCode ierr;
509899cda47SBarry Smith   PetscInt       len,i,n,m = A->rmap.n,radd;
51087828ca2SBarry Smith   PetscScalar    *x,zero = 0.0;
511ed3cc1f0SBarry Smith 
5123a40ed3dSBarry Smith   PetscFunctionBegin;
5132dcb1b2aSMatthew Knepley   ierr = VecSet(v,zero);CHKERRQ(ierr);
5141ebc52fbSHong Zhang   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
515096963f5SLois Curfman McInnes   ierr = VecGetSize(v,&n);CHKERRQ(ierr);
516899cda47SBarry Smith   if (n != A->rmap.N) SETERRQ(PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec");
517899cda47SBarry Smith   len  = PetscMin(a->A->rmap.n,a->A->cmap.n);
518899cda47SBarry Smith   radd = A->rmap.rstart*m;
51944cd7ae7SLois Curfman McInnes   for (i=0; i<len; i++) {
520096963f5SLois Curfman McInnes     x[i] = aloc->v[radd + i*m + i];
521096963f5SLois Curfman McInnes   }
5221ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
5233a40ed3dSBarry Smith   PetscFunctionReturn(0);
5248965ea79SLois Curfman McInnes }
5258965ea79SLois Curfman McInnes 
5264a2ae208SSatish Balay #undef __FUNCT__
5274a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIDense"
528dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIDense(Mat mat)
5298965ea79SLois Curfman McInnes {
5303501a2bdSLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
531dfbe8321SBarry Smith   PetscErrorCode ierr;
53201b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK)
53301b82886SBarry Smith   Mat_Plapack   *lu=(Mat_Plapack*)(mat->spptr);
53401b82886SBarry Smith #endif
535ed3cc1f0SBarry Smith 
5363a40ed3dSBarry Smith   PetscFunctionBegin;
53794d884c6SBarry Smith 
538aa482453SBarry Smith #if defined(PETSC_USE_LOG)
539899cda47SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D, Cols=%D",mat->rmap.N,mat->cmap.N);
5408965ea79SLois Curfman McInnes #endif
5418798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
5423501a2bdSLois Curfman McInnes   ierr = MatDestroy(mdn->A);CHKERRQ(ierr);
54305b42c5fSBarry Smith   if (mdn->lvec)   {ierr = VecDestroy(mdn->lvec);CHKERRQ(ierr);}
54405b42c5fSBarry Smith   if (mdn->Mvctx)  {ierr = VecScatterDestroy(mdn->Mvctx);CHKERRQ(ierr);}
54501b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK)
5462fbe02b9SBarry Smith   if (lu) {
54762b4c0b3SBarry Smith     ierr = PLA_Obj_free(&lu->A);CHKERRQ(ierr);
54862b4c0b3SBarry Smith     ierr = PLA_Obj_free (&lu->pivots);CHKERRQ(ierr);
54962b4c0b3SBarry Smith     ierr = PLA_Temp_free(&lu->templ);CHKERRQ(ierr);
55009d27a7eSBarry Smith 
5512fbe02b9SBarry Smith     if (lu->is_pla) {
55201b82886SBarry Smith       ierr = ISDestroy(lu->is_pla);CHKERRQ(ierr);
55301b82886SBarry Smith       ierr = ISDestroy(lu->is_petsc);CHKERRQ(ierr);
55401b82886SBarry Smith       ierr = VecScatterDestroy(lu->ctx);CHKERRQ(ierr);
555622d7880SLois Curfman McInnes     }
5562fbe02b9SBarry Smith   }
55701b82886SBarry Smith #endif
55801b82886SBarry Smith 
559606d414cSSatish Balay   ierr = PetscFree(mdn);CHKERRQ(ierr);
560dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
561901853e0SKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr);
562901853e0SKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMPIDenseSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
5634ae313f4SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMult_mpiaij_mpidense_C","",PETSC_NULL);CHKERRQ(ierr);
5644ae313f4SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C","",PETSC_NULL);CHKERRQ(ierr);
5654ae313f4SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C","",PETSC_NULL);CHKERRQ(ierr);
5663a40ed3dSBarry Smith   PetscFunctionReturn(0);
5678965ea79SLois Curfman McInnes }
56839ddd567SLois Curfman McInnes 
5694a2ae208SSatish Balay #undef __FUNCT__
5704a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense_Binary"
5716849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_Binary(Mat mat,PetscViewer viewer)
5728965ea79SLois Curfman McInnes {
57339ddd567SLois Curfman McInnes   Mat_MPIDense      *mdn = (Mat_MPIDense*)mat->data;
574dfbe8321SBarry Smith   PetscErrorCode    ierr;
575aa05aa95SBarry Smith   PetscViewerFormat format;
576aa05aa95SBarry Smith   int               fd;
577aa05aa95SBarry Smith   PetscInt          header[4],mmax,N = mat->cmap.N,i,j,m,k;
578aa05aa95SBarry Smith   PetscMPIInt       rank,tag  = ((PetscObject)viewer)->tag,size;
579578230a0SSatish Balay   PetscScalar       *work,*v,*vv;
580aa05aa95SBarry Smith   Mat_SeqDense      *a = (Mat_SeqDense*)mdn->A->data;
581aa05aa95SBarry Smith   MPI_Status        status;
5827056b6fcSBarry Smith 
5833a40ed3dSBarry Smith   PetscFunctionBegin;
58439ddd567SLois Curfman McInnes   if (mdn->size == 1) {
58539ddd567SLois Curfman McInnes     ierr = MatView(mdn->A,viewer);CHKERRQ(ierr);
586aa05aa95SBarry Smith   } else {
587aa05aa95SBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
5887adad957SLisandro Dalcin     ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr);
5897adad957SLisandro Dalcin     ierr = MPI_Comm_size(((PetscObject)mat)->comm,&size);CHKERRQ(ierr);
590aa05aa95SBarry Smith 
591aa05aa95SBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
592aa05aa95SBarry Smith     if (format == PETSC_VIEWER_BINARY_NATIVE) {
593aa05aa95SBarry Smith 
594aa05aa95SBarry Smith       if (!rank) {
595aa05aa95SBarry Smith 	/* store the matrix as a dense matrix */
596aa05aa95SBarry Smith 	header[0] = MAT_FILE_COOKIE;
597aa05aa95SBarry Smith 	header[1] = mat->rmap.N;
598aa05aa95SBarry Smith 	header[2] = N;
599aa05aa95SBarry Smith 	header[3] = MATRIX_BINARY_FORMAT_DENSE;
600aa05aa95SBarry Smith 	ierr = PetscBinaryWrite(fd,header,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
601aa05aa95SBarry Smith 
602aa05aa95SBarry Smith 	/* get largest work array needed for transposing array */
603aa05aa95SBarry Smith         mmax = mat->rmap.n;
604aa05aa95SBarry Smith         for (i=1; i<size; i++) {
605aa05aa95SBarry Smith           mmax = PetscMax(mmax,mat->rmap.range[i+1] - mat->rmap.range[i]);
6068965ea79SLois Curfman McInnes         }
607aa05aa95SBarry Smith 	ierr = PetscMalloc(mmax*N*sizeof(PetscScalar),&work);CHKERRQ(ierr);
608aa05aa95SBarry Smith 
609aa05aa95SBarry Smith 	/* write out local array, by rows */
610aa05aa95SBarry Smith         m    = mat->rmap.n;
611aa05aa95SBarry Smith 	v    = a->v;
612aa05aa95SBarry Smith         for (j=0; j<N; j++) {
613aa05aa95SBarry Smith           for (i=0; i<m; i++) {
614578230a0SSatish Balay 	    work[j + i*N] = *v++;
615aa05aa95SBarry Smith 	  }
616aa05aa95SBarry Smith 	}
617aa05aa95SBarry Smith 	ierr = PetscBinaryWrite(fd,work,m*N,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr);
618aa05aa95SBarry Smith         /* get largest work array to receive messages from other processes, excludes process zero */
619aa05aa95SBarry Smith         mmax = 0;
620aa05aa95SBarry Smith         for (i=1; i<size; i++) {
621aa05aa95SBarry Smith           mmax = PetscMax(mmax,mat->rmap.range[i+1] - mat->rmap.range[i]);
622aa05aa95SBarry Smith         }
623578230a0SSatish Balay 	ierr = PetscMalloc(mmax*N*sizeof(PetscScalar),&vv);CHKERRQ(ierr);
624578230a0SSatish Balay         v = vv;
625aa05aa95SBarry Smith         for (k=1; k<size; k++) {
626aa05aa95SBarry Smith           m    = mat->rmap.range[k+1] - mat->rmap.range[k];
6277adad957SLisandro Dalcin           ierr = MPI_Recv(v,m*N,MPIU_SCALAR,k,tag,((PetscObject)mat)->comm,&status);CHKERRQ(ierr);
628aa05aa95SBarry Smith 
629aa05aa95SBarry Smith           for (j=0; j<N; j++) {
630aa05aa95SBarry Smith             for (i=0; i<m; i++) {
631578230a0SSatish Balay               work[j + i*N] = *v++;
632aa05aa95SBarry Smith 	    }
633aa05aa95SBarry Smith 	  }
634aa05aa95SBarry Smith 	  ierr = PetscBinaryWrite(fd,work,m*N,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr);
635aa05aa95SBarry Smith         }
636aa05aa95SBarry Smith         ierr = PetscFree(work);CHKERRQ(ierr);
637578230a0SSatish Balay         ierr = PetscFree(vv);CHKERRQ(ierr);
638aa05aa95SBarry Smith       } else {
6397adad957SLisandro Dalcin         ierr = MPI_Send(a->v,mat->rmap.n*mat->cmap.N,MPIU_SCALAR,0,tag,((PetscObject)mat)->comm);CHKERRQ(ierr);
640aa05aa95SBarry Smith       }
641*4aa34b0aSBarry Smith     } else {
642*4aa34b0aSBarry Smith       SETERRQ(PETSC_ERR_SUP,"To store a parallel dense matrix you must first call PetscViewerSetFormat(viewer,PETSC_VIEWER_BINARY_NATIVE,...);");
643aa05aa95SBarry Smith     }
644aa05aa95SBarry Smith   }
6453a40ed3dSBarry Smith   PetscFunctionReturn(0);
6468965ea79SLois Curfman McInnes }
6478965ea79SLois Curfman McInnes 
6484a2ae208SSatish Balay #undef __FUNCT__
6494a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense_ASCIIorDraworSocket"
6506849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
6518965ea79SLois Curfman McInnes {
65239ddd567SLois Curfman McInnes   Mat_MPIDense      *mdn = (Mat_MPIDense*)mat->data;
653dfbe8321SBarry Smith   PetscErrorCode    ierr;
65432dcc486SBarry Smith   PetscMPIInt       size = mdn->size,rank = mdn->rank;
655b0a32e0cSBarry Smith   PetscViewerType   vtype;
65632077d6dSBarry Smith   PetscTruth        iascii,isdraw;
657b0a32e0cSBarry Smith   PetscViewer       sviewer;
658f3ef73ceSBarry Smith   PetscViewerFormat format;
65901b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK)
66001b82886SBarry Smith   Mat_Plapack       *lu=(Mat_Plapack*)(mat->spptr);
66101b82886SBarry Smith #endif
6628965ea79SLois Curfman McInnes 
6633a40ed3dSBarry Smith   PetscFunctionBegin;
66432077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
665fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
66632077d6dSBarry Smith   if (iascii) {
667b0a32e0cSBarry Smith     ierr = PetscViewerGetType(viewer,&vtype);CHKERRQ(ierr);
668b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
669456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
6704e220ebcSLois Curfman McInnes       MatInfo info;
671888f2ed8SSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
672899cda47SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"  [%d] local rows %D nz %D nz alloced %D mem %D \n",rank,mat->rmap.n,
67377431f27SBarry Smith                    (PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory);CHKERRQ(ierr);
674b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
6753501a2bdSLois Curfman McInnes       ierr = VecScatterView(mdn->Mvctx,viewer);CHKERRQ(ierr);
67601b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK)
67701b82886SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"PLAPACK run parameters:\n");CHKERRQ(ierr);
67804fea9ffSBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  Processor mesh: nprows %d, npcols %d\n",Plapack_nprows, Plapack_npcols);CHKERRQ(ierr);
67901b82886SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  Distr. block size nb: %d \n",lu->nb);CHKERRQ(ierr);
680eae6fb2eSBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  Error checking: %d\n",Plapack_ierror);CHKERRQ(ierr);
681eae6fb2eSBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  Algorithmic block size: %d\n",Plapack_nb_alg);CHKERRQ(ierr);
68201b82886SBarry Smith #endif
6833a40ed3dSBarry Smith       PetscFunctionReturn(0);
684fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
6853a40ed3dSBarry Smith       PetscFunctionReturn(0);
6868965ea79SLois Curfman McInnes     }
687f1af5d2fSBarry Smith   } else if (isdraw) {
688b0a32e0cSBarry Smith     PetscDraw  draw;
689f1af5d2fSBarry Smith     PetscTruth isnull;
690f1af5d2fSBarry Smith 
691b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
692b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr);
693f1af5d2fSBarry Smith     if (isnull) PetscFunctionReturn(0);
694f1af5d2fSBarry Smith   }
69577ed5343SBarry Smith 
6968965ea79SLois Curfman McInnes   if (size == 1) {
69739ddd567SLois Curfman McInnes     ierr = MatView(mdn->A,viewer);CHKERRQ(ierr);
6983a40ed3dSBarry Smith   } else {
6998965ea79SLois Curfman McInnes     /* assemble the entire matrix onto first processor. */
7008965ea79SLois Curfman McInnes     Mat         A;
701899cda47SBarry Smith     PetscInt    M = mat->rmap.N,N = mat->cmap.N,m,row,i,nz;
702ba8c8a56SBarry Smith     PetscInt    *cols;
703ba8c8a56SBarry Smith     PetscScalar *vals;
7048965ea79SLois Curfman McInnes 
7057adad957SLisandro Dalcin     ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr);
7068965ea79SLois Curfman McInnes     if (!rank) {
707f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
7083a40ed3dSBarry Smith     } else {
709f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
7108965ea79SLois Curfman McInnes     }
7117adad957SLisandro Dalcin     /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */
712878740d9SKris Buschelman     ierr = MatSetType(A,MATMPIDENSE);CHKERRQ(ierr);
713878740d9SKris Buschelman     ierr = MatMPIDenseSetPreallocation(A,PETSC_NULL);
71452e6d16bSBarry Smith     ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr);
7158965ea79SLois Curfman McInnes 
71639ddd567SLois Curfman McInnes     /* Copy the matrix ... This isn't the most efficient means,
71739ddd567SLois Curfman McInnes        but it's quick for now */
71851022da4SBarry Smith     A->insertmode = INSERT_VALUES;
719899cda47SBarry Smith     row = mat->rmap.rstart; m = mdn->A->rmap.n;
7208965ea79SLois Curfman McInnes     for (i=0; i<m; i++) {
721ba8c8a56SBarry Smith       ierr = MatGetRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr);
722ba8c8a56SBarry Smith       ierr = MatSetValues_MPIDense(A,1,&row,nz,cols,vals,INSERT_VALUES);CHKERRQ(ierr);
723ba8c8a56SBarry Smith       ierr = MatRestoreRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr);
72439ddd567SLois Curfman McInnes       row++;
7258965ea79SLois Curfman McInnes     }
7268965ea79SLois Curfman McInnes 
7276d4a8577SBarry Smith     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
7286d4a8577SBarry Smith     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
729b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
730b9b97703SBarry Smith     if (!rank) {
7316831982aSBarry Smith       ierr = MatView(((Mat_MPIDense*)(A->data))->A,sviewer);CHKERRQ(ierr);
7328965ea79SLois Curfman McInnes     }
733b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
734b0a32e0cSBarry Smith     ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
7358965ea79SLois Curfman McInnes     ierr = MatDestroy(A);CHKERRQ(ierr);
7368965ea79SLois Curfman McInnes   }
7373a40ed3dSBarry Smith   PetscFunctionReturn(0);
7388965ea79SLois Curfman McInnes }
7398965ea79SLois Curfman McInnes 
7404a2ae208SSatish Balay #undef __FUNCT__
7414a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense"
742dfbe8321SBarry Smith PetscErrorCode MatView_MPIDense(Mat mat,PetscViewer viewer)
7438965ea79SLois Curfman McInnes {
744dfbe8321SBarry Smith   PetscErrorCode ierr;
74532077d6dSBarry Smith   PetscTruth     iascii,isbinary,isdraw,issocket;
7468965ea79SLois Curfman McInnes 
747433994e6SBarry Smith   PetscFunctionBegin;
7480f5bd95cSBarry Smith 
74932077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
750fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
751b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr);
752fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
7530f5bd95cSBarry Smith 
75432077d6dSBarry Smith   if (iascii || issocket || isdraw) {
755f1af5d2fSBarry Smith     ierr = MatView_MPIDense_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
7560f5bd95cSBarry Smith   } else if (isbinary) {
7573a40ed3dSBarry Smith     ierr = MatView_MPIDense_Binary(mat,viewer);CHKERRQ(ierr);
7585cd90555SBarry Smith   } else {
759958c9bccSBarry Smith     SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPI dense matrix",((PetscObject)viewer)->type_name);
7608965ea79SLois Curfman McInnes   }
7613a40ed3dSBarry Smith   PetscFunctionReturn(0);
7628965ea79SLois Curfman McInnes }
7638965ea79SLois Curfman McInnes 
7644a2ae208SSatish Balay #undef __FUNCT__
7654a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIDense"
766dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info)
7678965ea79SLois Curfman McInnes {
7683501a2bdSLois Curfman McInnes   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
7693501a2bdSLois Curfman McInnes   Mat            mdn = mat->A;
770dfbe8321SBarry Smith   PetscErrorCode ierr;
771329f5518SBarry Smith   PetscReal      isend[5],irecv[5];
7728965ea79SLois Curfman McInnes 
7733a40ed3dSBarry Smith   PetscFunctionBegin;
774899cda47SBarry Smith   info->rows_global    = (double)A->rmap.N;
775899cda47SBarry Smith   info->columns_global = (double)A->cmap.N;
776899cda47SBarry Smith   info->rows_local     = (double)A->rmap.n;
777899cda47SBarry Smith   info->columns_local  = (double)A->cmap.N;
7784e220ebcSLois Curfman McInnes   info->block_size     = 1.0;
7794e220ebcSLois Curfman McInnes   ierr = MatGetInfo(mdn,MAT_LOCAL,info);CHKERRQ(ierr);
7804e220ebcSLois Curfman McInnes   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
7814e220ebcSLois Curfman McInnes   isend[3] = info->memory;  isend[4] = info->mallocs;
7828965ea79SLois Curfman McInnes   if (flag == MAT_LOCAL) {
7834e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
7844e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
7854e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
7864e220ebcSLois Curfman McInnes     info->memory       = isend[3];
7874e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
7888965ea79SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_MAX) {
7897adad957SLisandro Dalcin     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,((PetscObject)A)->comm);CHKERRQ(ierr);
7904e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
7914e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
7924e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
7934e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
7944e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
7958965ea79SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_SUM) {
7967adad957SLisandro Dalcin     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,((PetscObject)A)->comm);CHKERRQ(ierr);
7974e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
7984e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
7994e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
8004e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
8014e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
8028965ea79SLois Curfman McInnes   }
8034e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
8044e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
8054e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
8063a40ed3dSBarry Smith   PetscFunctionReturn(0);
8078965ea79SLois Curfman McInnes }
8088965ea79SLois Curfman McInnes 
8094a2ae208SSatish Balay #undef __FUNCT__
8104a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIDense"
8114e0d8c25SBarry Smith PetscErrorCode MatSetOption_MPIDense(Mat A,MatOption op,PetscTruth flg)
8128965ea79SLois Curfman McInnes {
81339ddd567SLois Curfman McInnes   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
814dfbe8321SBarry Smith   PetscErrorCode ierr;
8158965ea79SLois Curfman McInnes 
8163a40ed3dSBarry Smith   PetscFunctionBegin;
81712c028f9SKris Buschelman   switch (op) {
818512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
81912c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
82012c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
8214e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
82212c028f9SKris Buschelman     break;
82312c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
8244e0d8c25SBarry Smith     a->roworiented = flg;
8254e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
82612c028f9SKris Buschelman     break;
8274e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
82812c028f9SKris Buschelman   case MAT_USE_HASH_TABLE:
829290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
83012c028f9SKris Buschelman     break;
83112c028f9SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
8324e0d8c25SBarry Smith     a->donotstash = flg;
83312c028f9SKris Buschelman     break;
83477e54ba9SKris Buschelman   case MAT_SYMMETRIC:
83577e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
8369a4540c5SBarry Smith   case MAT_HERMITIAN:
8379a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
838600fe468SBarry Smith   case MAT_IGNORE_LOWER_TRIANGULAR:
839290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
84077e54ba9SKris Buschelman     break;
84112c028f9SKris Buschelman   default:
842600fe468SBarry Smith     SETERRQ1(PETSC_ERR_SUP,"unknown option %s",MatOptions[op]);
8433a40ed3dSBarry Smith   }
8443a40ed3dSBarry Smith   PetscFunctionReturn(0);
8458965ea79SLois Curfman McInnes }
8468965ea79SLois Curfman McInnes 
8478965ea79SLois Curfman McInnes 
8484a2ae208SSatish Balay #undef __FUNCT__
8494a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIDense"
850dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIDense(Mat A,Vec ll,Vec rr)
8515b2fa520SLois Curfman McInnes {
8525b2fa520SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)A->data;
8535b2fa520SLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)mdn->A->data;
85487828ca2SBarry Smith   PetscScalar    *l,*r,x,*v;
855dfbe8321SBarry Smith   PetscErrorCode ierr;
856899cda47SBarry Smith   PetscInt       i,j,s2a,s3a,s2,s3,m=mdn->A->rmap.n,n=mdn->A->cmap.n;
8575b2fa520SLois Curfman McInnes 
8585b2fa520SLois Curfman McInnes   PetscFunctionBegin;
85972d926a5SLois Curfman McInnes   ierr = MatGetLocalSize(A,&s2,&s3);CHKERRQ(ierr);
8605b2fa520SLois Curfman McInnes   if (ll) {
86172d926a5SLois Curfman McInnes     ierr = VecGetLocalSize(ll,&s2a);CHKERRQ(ierr);
862175be7b4SMatthew Knepley     if (s2a != s2) SETERRQ2(PETSC_ERR_ARG_SIZ,"Left scaling vector non-conforming local size, %d != %d.", s2a, s2);
8631ebc52fbSHong Zhang     ierr = VecGetArray(ll,&l);CHKERRQ(ierr);
8645b2fa520SLois Curfman McInnes     for (i=0; i<m; i++) {
8655b2fa520SLois Curfman McInnes       x = l[i];
8665b2fa520SLois Curfman McInnes       v = mat->v + i;
8675b2fa520SLois Curfman McInnes       for (j=0; j<n; j++) { (*v) *= x; v+= m;}
8685b2fa520SLois Curfman McInnes     }
8691ebc52fbSHong Zhang     ierr = VecRestoreArray(ll,&l);CHKERRQ(ierr);
870efee365bSSatish Balay     ierr = PetscLogFlops(n*m);CHKERRQ(ierr);
8715b2fa520SLois Curfman McInnes   }
8725b2fa520SLois Curfman McInnes   if (rr) {
873175be7b4SMatthew Knepley     ierr = VecGetLocalSize(rr,&s3a);CHKERRQ(ierr);
874175be7b4SMatthew Knepley     if (s3a != s3) SETERRQ2(PETSC_ERR_ARG_SIZ,"Right scaling vec non-conforming local size, %d != %d.", s3a, s3);
875ca9f406cSSatish Balay     ierr = VecScatterBegin(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
876ca9f406cSSatish Balay     ierr = VecScatterEnd(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
8771ebc52fbSHong Zhang     ierr = VecGetArray(mdn->lvec,&r);CHKERRQ(ierr);
8785b2fa520SLois Curfman McInnes     for (i=0; i<n; i++) {
8795b2fa520SLois Curfman McInnes       x = r[i];
8805b2fa520SLois Curfman McInnes       v = mat->v + i*m;
8815b2fa520SLois Curfman McInnes       for (j=0; j<m; j++) { (*v++) *= x;}
8825b2fa520SLois Curfman McInnes     }
8831ebc52fbSHong Zhang     ierr = VecRestoreArray(mdn->lvec,&r);CHKERRQ(ierr);
884efee365bSSatish Balay     ierr = PetscLogFlops(n*m);CHKERRQ(ierr);
8855b2fa520SLois Curfman McInnes   }
8865b2fa520SLois Curfman McInnes   PetscFunctionReturn(0);
8875b2fa520SLois Curfman McInnes }
8885b2fa520SLois Curfman McInnes 
8894a2ae208SSatish Balay #undef __FUNCT__
8904a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIDense"
891dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIDense(Mat A,NormType type,PetscReal *nrm)
892096963f5SLois Curfman McInnes {
8933501a2bdSLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)A->data;
8943501a2bdSLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)mdn->A->data;
895dfbe8321SBarry Smith   PetscErrorCode ierr;
89613f74950SBarry Smith   PetscInt       i,j;
897329f5518SBarry Smith   PetscReal      sum = 0.0;
89887828ca2SBarry Smith   PetscScalar    *v = mat->v;
8993501a2bdSLois Curfman McInnes 
9003a40ed3dSBarry Smith   PetscFunctionBegin;
9013501a2bdSLois Curfman McInnes   if (mdn->size == 1) {
902064f8208SBarry Smith     ierr =  MatNorm(mdn->A,type,nrm);CHKERRQ(ierr);
9033501a2bdSLois Curfman McInnes   } else {
9043501a2bdSLois Curfman McInnes     if (type == NORM_FROBENIUS) {
905899cda47SBarry Smith       for (i=0; i<mdn->A->cmap.n*mdn->A->rmap.n; i++) {
906aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
907329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
9083501a2bdSLois Curfman McInnes #else
9093501a2bdSLois Curfman McInnes         sum += (*v)*(*v); v++;
9103501a2bdSLois Curfman McInnes #endif
9113501a2bdSLois Curfman McInnes       }
9127adad957SLisandro Dalcin       ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_SUM,((PetscObject)A)->comm);CHKERRQ(ierr);
913064f8208SBarry Smith       *nrm = sqrt(*nrm);
914899cda47SBarry Smith       ierr = PetscLogFlops(2*mdn->A->cmap.n*mdn->A->rmap.n);CHKERRQ(ierr);
9153a40ed3dSBarry Smith     } else if (type == NORM_1) {
916329f5518SBarry Smith       PetscReal *tmp,*tmp2;
917899cda47SBarry Smith       ierr = PetscMalloc(2*A->cmap.N*sizeof(PetscReal),&tmp);CHKERRQ(ierr);
918899cda47SBarry Smith       tmp2 = tmp + A->cmap.N;
919899cda47SBarry Smith       ierr = PetscMemzero(tmp,2*A->cmap.N*sizeof(PetscReal));CHKERRQ(ierr);
920064f8208SBarry Smith       *nrm = 0.0;
9213501a2bdSLois Curfman McInnes       v = mat->v;
922899cda47SBarry Smith       for (j=0; j<mdn->A->cmap.n; j++) {
923899cda47SBarry Smith         for (i=0; i<mdn->A->rmap.n; i++) {
92467e560aaSBarry Smith           tmp[j] += PetscAbsScalar(*v);  v++;
9253501a2bdSLois Curfman McInnes         }
9263501a2bdSLois Curfman McInnes       }
9277adad957SLisandro Dalcin       ierr = MPI_Allreduce(tmp,tmp2,A->cmap.N,MPIU_REAL,MPI_SUM,((PetscObject)A)->comm);CHKERRQ(ierr);
928899cda47SBarry Smith       for (j=0; j<A->cmap.N; j++) {
929064f8208SBarry Smith         if (tmp2[j] > *nrm) *nrm = tmp2[j];
9303501a2bdSLois Curfman McInnes       }
931606d414cSSatish Balay       ierr = PetscFree(tmp);CHKERRQ(ierr);
932899cda47SBarry Smith       ierr = PetscLogFlops(A->cmap.n*A->rmap.n);CHKERRQ(ierr);
9333a40ed3dSBarry Smith     } else if (type == NORM_INFINITY) { /* max row norm */
934329f5518SBarry Smith       PetscReal ntemp;
9353501a2bdSLois Curfman McInnes       ierr = MatNorm(mdn->A,type,&ntemp);CHKERRQ(ierr);
9367adad957SLisandro Dalcin       ierr = MPI_Allreduce(&ntemp,nrm,1,MPIU_REAL,MPI_MAX,((PetscObject)A)->comm);CHKERRQ(ierr);
9373a40ed3dSBarry Smith     } else {
93829bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"No support for two norm");
9393501a2bdSLois Curfman McInnes     }
9403501a2bdSLois Curfman McInnes   }
9413a40ed3dSBarry Smith   PetscFunctionReturn(0);
9423501a2bdSLois Curfman McInnes }
9433501a2bdSLois Curfman McInnes 
9444a2ae208SSatish Balay #undef __FUNCT__
9454a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPIDense"
946fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIDense(Mat A,MatReuse reuse,Mat *matout)
9473501a2bdSLois Curfman McInnes {
9483501a2bdSLois Curfman McInnes   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
9493501a2bdSLois Curfman McInnes   Mat_SeqDense   *Aloc = (Mat_SeqDense*)a->A->data;
9503501a2bdSLois Curfman McInnes   Mat            B;
951899cda47SBarry Smith   PetscInt       M = A->rmap.N,N = A->cmap.N,m,n,*rwork,rstart = A->rmap.rstart;
9526849ba73SBarry Smith   PetscErrorCode ierr;
95313f74950SBarry Smith   PetscInt       j,i;
95487828ca2SBarry Smith   PetscScalar    *v;
9553501a2bdSLois Curfman McInnes 
9563a40ed3dSBarry Smith   PetscFunctionBegin;
957e9695a30SBarry Smith   if (reuse == MAT_REUSE_MATRIX && A == *matout && M != N) SETERRQ(PETSC_ERR_SUP,"Supports square matrix only in-place");
958fc4dec0aSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || A == *matout) {
9597adad957SLisandro Dalcin     ierr = MatCreate(((PetscObject)A)->comm,&B);CHKERRQ(ierr);
960f69a0ea3SMatthew Knepley     ierr = MatSetSizes(B,PETSC_DECIDE,PETSC_DECIDE,N,M);CHKERRQ(ierr);
9617adad957SLisandro Dalcin     ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr);
962878740d9SKris Buschelman     ierr = MatMPIDenseSetPreallocation(B,PETSC_NULL);CHKERRQ(ierr);
963fc4dec0aSBarry Smith   } else {
964fc4dec0aSBarry Smith     B = *matout;
965fc4dec0aSBarry Smith   }
9663501a2bdSLois Curfman McInnes 
967899cda47SBarry Smith   m = a->A->rmap.n; n = a->A->cmap.n; v = Aloc->v;
9681acff37aSSatish Balay   ierr = PetscMalloc(m*sizeof(PetscInt),&rwork);CHKERRQ(ierr);
9693501a2bdSLois Curfman McInnes   for (i=0; i<m; i++) rwork[i] = rstart + i;
9701acff37aSSatish Balay   for (j=0; j<n; j++) {
9713501a2bdSLois Curfman McInnes     ierr = MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES);CHKERRQ(ierr);
9723501a2bdSLois Curfman McInnes     v   += m;
9733501a2bdSLois Curfman McInnes   }
974606d414cSSatish Balay   ierr = PetscFree(rwork);CHKERRQ(ierr);
9756d4a8577SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
9766d4a8577SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
977815cbec1SBarry Smith   if (reuse == MAT_INITIAL_MATRIX || *matout != A) {
9783501a2bdSLois Curfman McInnes     *matout = B;
9793501a2bdSLois Curfman McInnes   } else {
980273d9f13SBarry Smith     ierr = MatHeaderCopy(A,B);CHKERRQ(ierr);
9813501a2bdSLois Curfman McInnes   }
9823a40ed3dSBarry Smith   PetscFunctionReturn(0);
983096963f5SLois Curfman McInnes }
984096963f5SLois Curfman McInnes 
985d9eff348SSatish Balay #include "petscblaslapack.h"
9864a2ae208SSatish Balay #undef __FUNCT__
9874a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIDense"
988f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIDense(Mat inA,PetscScalar alpha)
98944cd7ae7SLois Curfman McInnes {
99044cd7ae7SLois Curfman McInnes   Mat_MPIDense   *A = (Mat_MPIDense*)inA->data;
99144cd7ae7SLois Curfman McInnes   Mat_SeqDense   *a = (Mat_SeqDense*)A->A->data;
992f4df32b1SMatthew Knepley   PetscScalar    oalpha = alpha;
993efee365bSSatish Balay   PetscErrorCode ierr;
9940805154bSBarry Smith   PetscBLASInt   one = 1,nz = PetscBLASIntCast(inA->rmap.n*inA->cmap.N);
99544cd7ae7SLois Curfman McInnes 
9963a40ed3dSBarry Smith   PetscFunctionBegin;
997f4df32b1SMatthew Knepley   BLASscal_(&nz,&oalpha,a->v,&one);
998efee365bSSatish Balay   ierr = PetscLogFlops(nz);CHKERRQ(ierr);
9993a40ed3dSBarry Smith   PetscFunctionReturn(0);
100044cd7ae7SLois Curfman McInnes }
100144cd7ae7SLois Curfman McInnes 
10026849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat *);
10038965ea79SLois Curfman McInnes 
10044a2ae208SSatish Balay #undef __FUNCT__
10054a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPIDense"
1006dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPIDense(Mat A)
1007273d9f13SBarry Smith {
1008dfbe8321SBarry Smith   PetscErrorCode ierr;
1009273d9f13SBarry Smith 
1010273d9f13SBarry Smith   PetscFunctionBegin;
1011273d9f13SBarry Smith   ierr =  MatMPIDenseSetPreallocation(A,0);CHKERRQ(ierr);
1012273d9f13SBarry Smith   PetscFunctionReturn(0);
1013273d9f13SBarry Smith }
1014273d9f13SBarry Smith 
101501b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK)
1016eae6fb2eSBarry Smith 
1017eae6fb2eSBarry Smith #undef __FUNCT__
1018eae6fb2eSBarry Smith #define __FUNCT__ "MatMPIDenseCreatePlapack"
1019eae6fb2eSBarry Smith PetscErrorCode MatMPIDenseCreatePlapack(Mat A)
1020eae6fb2eSBarry Smith {
1021eae6fb2eSBarry Smith   Mat_Plapack    *lu;
1022eae6fb2eSBarry Smith   PetscErrorCode ierr;
1023eae6fb2eSBarry Smith   PetscInt       M=A->rmap.N;
1024eae6fb2eSBarry Smith   MPI_Comm       comm=((PetscObject)A)->comm;
1025eae6fb2eSBarry Smith   PetscMPIInt    size;
1026eae6fb2eSBarry Smith 
1027eae6fb2eSBarry Smith   PetscFunctionBegin;
10282fbe02b9SBarry Smith   if (A->spptr) PetscFunctionReturn(0);
10292fbe02b9SBarry Smith   ierr = PetscNewLog(A,Mat_Plapack,&lu);CHKERRQ(ierr);
10302fbe02b9SBarry Smith   A->spptr = (void*)lu;
10312fbe02b9SBarry Smith 
1032eae6fb2eSBarry Smith   lu = (Mat_Plapack*)(A->spptr);
1033eae6fb2eSBarry Smith 
1034eae6fb2eSBarry Smith   /* Set default Plapack parameters */
1035eae6fb2eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
1036eae6fb2eSBarry Smith   lu->nb     = M/size;
1037eae6fb2eSBarry Smith   if (M - lu->nb*size) lu->nb++; /* without cyclic distribution */
1038eae6fb2eSBarry Smith 
1039eae6fb2eSBarry Smith   /* Set runtime options */
1040eae6fb2eSBarry Smith   ierr = PetscOptionsBegin(((PetscObject)A)->comm,((PetscObject)A)->prefix,"PLAPACK Options","Mat");CHKERRQ(ierr);
1041eae6fb2eSBarry Smith     ierr = PetscOptionsInt("-mat_plapack_nb","block size of template vector","None",lu->nb,&lu->nb,PETSC_NULL);CHKERRQ(ierr);
1042eae6fb2eSBarry Smith   PetscOptionsEnd();
1043eae6fb2eSBarry Smith 
1044eae6fb2eSBarry Smith   /* Create object distribution template */
1045eae6fb2eSBarry Smith   lu->templ = NULL;
1046eae6fb2eSBarry Smith   ierr = PLA_Temp_create(lu->nb, 0, &lu->templ);CHKERRQ(ierr);
1047eae6fb2eSBarry Smith 
1048eae6fb2eSBarry Smith   /* Set the datatype */
1049eae6fb2eSBarry Smith #if defined(PETSC_USE_COMPLEX)
1050eae6fb2eSBarry Smith   lu->datatype = MPI_DOUBLE_COMPLEX;
1051eae6fb2eSBarry Smith #else
1052eae6fb2eSBarry Smith   lu->datatype = MPI_DOUBLE;
1053eae6fb2eSBarry Smith #endif
1054eae6fb2eSBarry Smith 
105579b0a62dSBarry Smith   ierr = PLA_Matrix_create(lu->datatype,M,A->cmap.N,lu->templ,PLA_ALIGN_FIRST,PLA_ALIGN_FIRST,&lu->A);CHKERRQ(ierr);
105679b0a62dSBarry Smith 
1057eae6fb2eSBarry Smith 
1058eae6fb2eSBarry Smith   lu->pla_solved     = PETSC_FALSE; /* MatSolve_Plapack() is called yet */
1059eae6fb2eSBarry Smith   PetscFunctionReturn(0);
1060eae6fb2eSBarry Smith }
1061eae6fb2eSBarry Smith 
1062eae6fb2eSBarry Smith #undef __FUNCT__
1063eae6fb2eSBarry Smith #define __FUNCT__ "MatMPIDenseCopyToPlapack"
1064eae6fb2eSBarry Smith PetscErrorCode MatMPIDenseCopyToPlapack(Mat A,Mat F)
1065eae6fb2eSBarry Smith {
1066eae6fb2eSBarry Smith   Mat_Plapack    *lu = (Mat_Plapack*)(F)->spptr;
1067eae6fb2eSBarry Smith   PetscErrorCode ierr;
106879b0a62dSBarry Smith   PetscInt       M=A->cmap.N,m=A->rmap.n,rstart;
1069eae6fb2eSBarry Smith   PetscScalar    *array;
1070eae6fb2eSBarry Smith   PetscReal      one = 1.0;
1071eae6fb2eSBarry Smith 
1072eae6fb2eSBarry Smith   PetscFunctionBegin;
10732fbe02b9SBarry Smith   /* Copy A into F->lu->A */
1074eae6fb2eSBarry Smith   ierr = PLA_Obj_set_to_zero(lu->A);CHKERRQ(ierr);
1075eae6fb2eSBarry Smith   ierr = PLA_API_begin();CHKERRQ(ierr);
1076eae6fb2eSBarry Smith   ierr = PLA_Obj_API_open(lu->A);CHKERRQ(ierr);
107779b0a62dSBarry Smith   ierr = MatGetOwnershipRange(A,&rstart,PETSC_NULL);CHKERRQ(ierr);
1078eae6fb2eSBarry Smith   ierr = MatGetArray(A,&array);CHKERRQ(ierr);
1079eae6fb2eSBarry Smith   ierr = PLA_API_axpy_matrix_to_global(m,M, &one,(void *)array,m,lu->A,rstart,0);CHKERRQ(ierr);
1080eae6fb2eSBarry Smith   ierr = MatRestoreArray(A,&array);CHKERRQ(ierr);
1081eae6fb2eSBarry Smith   ierr = PLA_Obj_API_close(lu->A);CHKERRQ(ierr);
1082eae6fb2eSBarry Smith   ierr = PLA_API_end();CHKERRQ(ierr);
1083eae6fb2eSBarry Smith   lu->rstart = rstart;
1084eae6fb2eSBarry Smith   PetscFunctionReturn(0);
1085eae6fb2eSBarry Smith }
1086eae6fb2eSBarry Smith 
108701b82886SBarry Smith #undef __FUNCT__
10882fbe02b9SBarry Smith #define __FUNCT__ "MatMPIDenseCopyFromPlapack"
10892fbe02b9SBarry Smith PetscErrorCode MatMPIDenseCopyFromPlapack(Mat F,Mat A)
10902fbe02b9SBarry Smith {
10912fbe02b9SBarry Smith   Mat_Plapack    *lu = (Mat_Plapack*)(F)->spptr;
10922fbe02b9SBarry Smith   PetscErrorCode ierr;
109379b0a62dSBarry Smith   PetscInt       M=A->cmap.N,m=A->rmap.n,rstart;
10942fbe02b9SBarry Smith   PetscScalar    *array;
10952fbe02b9SBarry Smith   PetscReal      one = 1.0;
10962fbe02b9SBarry Smith 
10972fbe02b9SBarry Smith   PetscFunctionBegin;
10982fbe02b9SBarry Smith   /* Copy F into A->lu->A */
109979b0a62dSBarry Smith   ierr = MatZeroEntries(A);CHKERRQ(ierr);
11002fbe02b9SBarry Smith   ierr = PLA_API_begin();CHKERRQ(ierr);
11012fbe02b9SBarry Smith   ierr = PLA_Obj_API_open(lu->A);CHKERRQ(ierr);
11022fbe02b9SBarry Smith   ierr = MatGetOwnershipRange(A,&rstart,PETSC_NULL);CHKERRQ(ierr);
11032fbe02b9SBarry Smith   ierr = MatGetArray(A,&array);CHKERRQ(ierr);
11042fbe02b9SBarry Smith   ierr = PLA_API_axpy_global_to_matrix(m,M, &one,lu->A,rstart,0,(void *)array,m);CHKERRQ(ierr);
11052fbe02b9SBarry Smith   ierr = MatRestoreArray(A,&array);CHKERRQ(ierr);
11062fbe02b9SBarry Smith   ierr = PLA_Obj_API_close(lu->A);CHKERRQ(ierr);
11072fbe02b9SBarry Smith   ierr = PLA_API_end();CHKERRQ(ierr);
11082fbe02b9SBarry Smith   lu->rstart = rstart;
11092fbe02b9SBarry Smith   PetscFunctionReturn(0);
11102fbe02b9SBarry Smith }
11112fbe02b9SBarry Smith 
11122fbe02b9SBarry Smith #undef __FUNCT__
11132fbe02b9SBarry Smith #define __FUNCT__ "MatMatMultNumeric_MPIDense_MPIDense"
11142fbe02b9SBarry Smith PetscErrorCode MatMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C)
11152fbe02b9SBarry Smith {
11162fbe02b9SBarry Smith   PetscErrorCode ierr;
11172fbe02b9SBarry Smith   Mat_Plapack    *luA = (Mat_Plapack*)A->spptr;
11182fbe02b9SBarry Smith   Mat_Plapack    *luB = (Mat_Plapack*)B->spptr;
11192fbe02b9SBarry Smith   Mat_Plapack    *luC = (Mat_Plapack*)C->spptr;
11202fbe02b9SBarry Smith   PLA_Obj        alpha = NULL,beta = NULL;
11212fbe02b9SBarry Smith 
11222fbe02b9SBarry Smith   PetscFunctionBegin;
11232fbe02b9SBarry Smith   ierr = MatMPIDenseCopyToPlapack(A,A);CHKERRQ(ierr);
11242fbe02b9SBarry Smith   ierr = MatMPIDenseCopyToPlapack(B,B);CHKERRQ(ierr);
11252fbe02b9SBarry Smith 
11266e6f9017SBarry Smith   /*
1127cb2480eaSBarry Smith   ierr = PLA_Global_show("A = ",luA->A,"%g ","");CHKERRQ(ierr);
1128cb2480eaSBarry Smith   ierr = PLA_Global_show("B = ",luB->A,"%g ","");CHKERRQ(ierr);
11296e6f9017SBarry Smith   */
1130cb2480eaSBarry Smith 
11312fbe02b9SBarry Smith   /* do the multiply in PLA  */
113279b0a62dSBarry Smith   ierr = PLA_Create_constants_conf_to(luA->A,NULL,NULL,&alpha);CHKERRQ(ierr);
113379b0a62dSBarry Smith   ierr = PLA_Create_constants_conf_to(luC->A,NULL,&beta,NULL);CHKERRQ(ierr);
113479b0a62dSBarry Smith   CHKMEMQ;
11352fbe02b9SBarry Smith 
1136cb2480eaSBarry Smith   ierr = PLA_Gemm(PLA_NO_TRANSPOSE,PLA_NO_TRANSPOSE,alpha,luA->A,luB->A,beta,luC->A);//CHKERRQ(ierr);
113779b0a62dSBarry Smith   CHKMEMQ;
11382fbe02b9SBarry Smith   ierr = PLA_Obj_free(&alpha);CHKERRQ(ierr);
11392fbe02b9SBarry Smith   ierr = PLA_Obj_free(&beta);CHKERRQ(ierr);
11402fbe02b9SBarry Smith 
11416e6f9017SBarry Smith   /*
1142cb2480eaSBarry Smith   ierr = PLA_Global_show("C = ",luC->A,"%g ","");CHKERRQ(ierr);
11436e6f9017SBarry Smith   */
11442fbe02b9SBarry Smith   ierr = MatMPIDenseCopyFromPlapack(C,C);CHKERRQ(ierr);
11452fbe02b9SBarry Smith   PetscFunctionReturn(0);
11462fbe02b9SBarry Smith }
11472fbe02b9SBarry Smith 
11482fbe02b9SBarry Smith #undef __FUNCT__
11492fbe02b9SBarry Smith #define __FUNCT__ "MatMatMultSymbolic_MPIDense_MPIDense"
11502fbe02b9SBarry Smith PetscErrorCode MatMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat *C)
11512fbe02b9SBarry Smith {
11522fbe02b9SBarry Smith   PetscErrorCode ierr;
11532fbe02b9SBarry Smith   PetscInt       m=A->rmap.n,n=B->cmap.n;
11542fbe02b9SBarry Smith   Mat            Cmat;
11552fbe02b9SBarry Smith 
11562fbe02b9SBarry Smith   PetscFunctionBegin;
11572fbe02b9SBarry Smith   if (A->cmap.n != B->rmap.n) SETERRQ2(PETSC_ERR_ARG_SIZ,"A->cmap.n %d != B->rmap.n %d\n",A->cmap.n,B->rmap.n);
11586e6f9017SBarry Smith   SETERRQ(PETSC_ERR_LIB,"Due to aparent bugs in PLAPACK,this is not currently supported");
11592fbe02b9SBarry Smith   ierr = MatCreate(((PetscObject)B)->comm,&Cmat);CHKERRQ(ierr);
11602fbe02b9SBarry Smith   ierr = MatSetSizes(Cmat,m,n,A->rmap.N,B->cmap.N);CHKERRQ(ierr);
11612fbe02b9SBarry Smith   ierr = MatSetType(Cmat,MATMPIDENSE);CHKERRQ(ierr);
11622fbe02b9SBarry Smith   ierr = MatAssemblyBegin(Cmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
11632fbe02b9SBarry Smith   ierr = MatAssemblyEnd(Cmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
11642fbe02b9SBarry Smith   ierr = MatMPIDenseCreatePlapack(A);CHKERRQ(ierr);
11652fbe02b9SBarry Smith   ierr = MatMPIDenseCreatePlapack(B);CHKERRQ(ierr);
11662fbe02b9SBarry Smith   ierr = MatMPIDenseCreatePlapack(Cmat);CHKERRQ(ierr);
11672fbe02b9SBarry Smith   *C = Cmat;
11682fbe02b9SBarry Smith   PetscFunctionReturn(0);
11692fbe02b9SBarry Smith }
11702fbe02b9SBarry Smith 
11712fbe02b9SBarry Smith #undef __FUNCT__
11722fbe02b9SBarry Smith #define __FUNCT__ "MatMatMult_MPIDense_MPIDense"
11732fbe02b9SBarry Smith PetscErrorCode MatMatMult_MPIDense_MPIDense(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C)
11742fbe02b9SBarry Smith {
11752fbe02b9SBarry Smith   PetscErrorCode ierr;
11762fbe02b9SBarry Smith 
11772fbe02b9SBarry Smith   PetscFunctionBegin;
11782fbe02b9SBarry Smith   if (scall == MAT_INITIAL_MATRIX){
11792fbe02b9SBarry Smith     ierr = MatMatMultSymbolic_MPIDense_MPIDense(A,B,fill,C);CHKERRQ(ierr);
11802fbe02b9SBarry Smith   }
11812fbe02b9SBarry Smith   ierr = MatMatMultNumeric_MPIDense_MPIDense(A,B,*C);CHKERRQ(ierr);
11822fbe02b9SBarry Smith   PetscFunctionReturn(0);
11832fbe02b9SBarry Smith }
11842fbe02b9SBarry Smith 
11852fbe02b9SBarry Smith 
11862fbe02b9SBarry Smith #undef __FUNCT__
118701b82886SBarry Smith #define __FUNCT__ "MatSolve_MPIDense"
118801b82886SBarry Smith PetscErrorCode MatSolve_MPIDense(Mat A,Vec b,Vec x)
118901b82886SBarry Smith {
119004fea9ffSBarry Smith   MPI_Comm       comm = ((PetscObject)A)->comm,dummy_comm;
119101b82886SBarry Smith   Mat_Plapack    *lu = (Mat_Plapack*)A->spptr;
119201b82886SBarry Smith   PetscErrorCode ierr;
119301b82886SBarry Smith   PetscInt       M=A->rmap.N,m=A->rmap.n,rstart,i,j,*idx_pla,*idx_petsc,loc_m,loc_stride;
119401b82886SBarry Smith   PetscScalar    *array;
119501b82886SBarry Smith   PetscReal      one = 1.0;
1196aeccfd6fSBarry Smith   PetscMPIInt    size,r_rank,r_nproc,c_rank,c_nproc;;
119701b82886SBarry Smith   PLA_Obj        v_pla = NULL;
119801b82886SBarry Smith   PetscScalar    *loc_buf;
119901b82886SBarry Smith   Vec            loc_x;
120001b82886SBarry Smith 
120101b82886SBarry Smith   PetscFunctionBegin;
120201b82886SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
120301b82886SBarry Smith 
120401b82886SBarry Smith   /* Create PLAPACK vector objects, then copy b into PLAPACK b */
120562b4c0b3SBarry Smith   ierr = PLA_Mvector_create(lu->datatype,M,1,lu->templ,PLA_ALIGN_FIRST,&v_pla);CHKERRQ(ierr);
120662b4c0b3SBarry Smith   ierr = PLA_Obj_set_to_zero(v_pla);CHKERRQ(ierr);
120701b82886SBarry Smith 
120801b82886SBarry Smith   /* Copy b into rhs_pla */
120962b4c0b3SBarry Smith   ierr = PLA_API_begin();CHKERRQ(ierr);
121062b4c0b3SBarry Smith   ierr = PLA_Obj_API_open(v_pla);CHKERRQ(ierr);
121101b82886SBarry Smith   ierr = VecGetArray(b,&array);CHKERRQ(ierr);
121262b4c0b3SBarry Smith   ierr = PLA_API_axpy_vector_to_global(m,&one,(void *)array,1,v_pla,lu->rstart);CHKERRQ(ierr);
121301b82886SBarry Smith   ierr = VecRestoreArray(b,&array);CHKERRQ(ierr);
121462b4c0b3SBarry Smith   ierr = PLA_Obj_API_close(v_pla);CHKERRQ(ierr);
121562b4c0b3SBarry Smith   ierr = PLA_API_end();CHKERRQ(ierr);
121601b82886SBarry Smith 
121701b82886SBarry Smith   if (A->factor == FACTOR_LU){
121801b82886SBarry Smith     /* Apply the permutations to the right hand sides */
121962b4c0b3SBarry Smith     ierr = PLA_Apply_pivots_to_rows (v_pla,lu->pivots);CHKERRQ(ierr);
122001b82886SBarry Smith 
122101b82886SBarry Smith     /* Solve L y = b, overwriting b with y */
122262b4c0b3SBarry Smith     ierr = PLA_Trsv( PLA_LOWER_TRIANGULAR,PLA_NO_TRANSPOSE,PLA_UNIT_DIAG,lu->A,v_pla );CHKERRQ(ierr);
122301b82886SBarry Smith 
122401b82886SBarry Smith     /* Solve U x = y (=b), overwriting b with x */
122562b4c0b3SBarry Smith     ierr = PLA_Trsv( PLA_UPPER_TRIANGULAR,PLA_NO_TRANSPOSE,PLA_NONUNIT_DIAG,lu->A,v_pla );CHKERRQ(ierr);
122601b82886SBarry Smith   } else { /* FACTOR_CHOLESKY */
122762b4c0b3SBarry Smith     ierr = PLA_Trsv( PLA_LOWER_TRIANGULAR,PLA_NO_TRANSPOSE,PLA_NONUNIT_DIAG,lu->A,v_pla);CHKERRQ(ierr);
122862b4c0b3SBarry Smith     ierr = PLA_Trsv( PLA_LOWER_TRIANGULAR,(lu->datatype == MPI_DOUBLE ? PLA_TRANSPOSE : PLA_CONJUGATE_TRANSPOSE),PLA_NONUNIT_DIAG,lu->A,v_pla);CHKERRQ(ierr);
122901b82886SBarry Smith   }
123001b82886SBarry Smith 
123101b82886SBarry Smith   /* Copy PLAPACK x into Petsc vector x  */
123262b4c0b3SBarry Smith   ierr = PLA_Obj_local_length(v_pla, &loc_m);CHKERRQ(ierr);
123362b4c0b3SBarry Smith   ierr = PLA_Obj_local_buffer(v_pla, (void**)&loc_buf);CHKERRQ(ierr);
123462b4c0b3SBarry Smith   ierr = PLA_Obj_local_stride(v_pla, &loc_stride);CHKERRQ(ierr);
123501b82886SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,loc_m*loc_stride,loc_buf,&loc_x);CHKERRQ(ierr);
123601b82886SBarry Smith   if (!lu->pla_solved){
123701b82886SBarry Smith 
123804fea9ffSBarry Smith     ierr = PLA_Temp_comm_row_info(lu->templ,&dummy_comm,&r_rank,&r_nproc);CHKERRQ(ierr);
123904fea9ffSBarry Smith     ierr = PLA_Temp_comm_col_info(lu->templ,&dummy_comm,&c_rank,&c_nproc);CHKERRQ(ierr);
124001b82886SBarry Smith     /* printf(" [%d] rank: %d %d, nproc: %d %d\n",rank,r_rank,c_rank,r_nproc,c_nproc); */
124101b82886SBarry Smith 
124201b82886SBarry Smith     /* Create IS and cts for VecScatterring */
124362b4c0b3SBarry Smith     ierr = PLA_Obj_local_length(v_pla, &loc_m);CHKERRQ(ierr);
124462b4c0b3SBarry Smith     ierr = PLA_Obj_local_stride(v_pla, &loc_stride);CHKERRQ(ierr);
124501b82886SBarry Smith     ierr = PetscMalloc((2*loc_m+1)*sizeof(PetscInt),&idx_pla);CHKERRQ(ierr);
124601b82886SBarry Smith     idx_petsc = idx_pla + loc_m;
124701b82886SBarry Smith 
124801b82886SBarry Smith     rstart = (r_rank*c_nproc+c_rank)*lu->nb;
124901b82886SBarry Smith     for (i=0; i<loc_m; i+=lu->nb){
125001b82886SBarry Smith       j = 0;
125101b82886SBarry Smith       while (j < lu->nb && i+j < loc_m){
125201b82886SBarry Smith         idx_petsc[i+j] = rstart + j; j++;
125301b82886SBarry Smith       }
125401b82886SBarry Smith       rstart += size*lu->nb;
125501b82886SBarry Smith     }
125601b82886SBarry Smith 
125701b82886SBarry Smith     for (i=0; i<loc_m; i++) idx_pla[i] = i*loc_stride;
125801b82886SBarry Smith 
125901b82886SBarry Smith     ierr = ISCreateGeneral(PETSC_COMM_SELF,loc_m,idx_pla,&lu->is_pla);CHKERRQ(ierr);
126001b82886SBarry Smith     ierr = ISCreateGeneral(PETSC_COMM_SELF,loc_m,idx_petsc,&lu->is_petsc);CHKERRQ(ierr);
126101b82886SBarry Smith     ierr = PetscFree(idx_pla);CHKERRQ(ierr);
126201b82886SBarry Smith     ierr = VecScatterCreate(loc_x,lu->is_pla,x,lu->is_petsc,&lu->ctx);CHKERRQ(ierr);
126301b82886SBarry Smith   }
126401b82886SBarry Smith   ierr = VecScatterBegin(lu->ctx,loc_x,x,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
126501b82886SBarry Smith   ierr = VecScatterEnd(lu->ctx,loc_x,x,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
126601b82886SBarry Smith 
126701b82886SBarry Smith   /* Free data */
126801b82886SBarry Smith   ierr = VecDestroy(loc_x);CHKERRQ(ierr);
126962b4c0b3SBarry Smith   ierr = PLA_Obj_free(&v_pla);CHKERRQ(ierr);
127001b82886SBarry Smith 
127101b82886SBarry Smith   lu->pla_solved = PETSC_TRUE;
127201b82886SBarry Smith   PetscFunctionReturn(0);
127301b82886SBarry Smith }
127401b82886SBarry Smith 
127501b82886SBarry Smith #undef __FUNCT__
127601b82886SBarry Smith #define __FUNCT__ "MatLUFactorNumeric_MPIDense"
127701b82886SBarry Smith PetscErrorCode MatLUFactorNumeric_MPIDense(Mat A,MatFactorInfo *info,Mat *F)
127801b82886SBarry Smith {
127901b82886SBarry Smith   Mat_Plapack    *lu = (Mat_Plapack*)(*F)->spptr;
128001b82886SBarry Smith   PetscErrorCode ierr;
1281eae6fb2eSBarry Smith   PetscInt       info_pla;
128201b82886SBarry Smith 
128301b82886SBarry Smith   PetscFunctionBegin;
128462b4c0b3SBarry Smith   ierr = PLA_Obj_set_to_zero(lu->A);CHKERRQ(ierr);
128501b82886SBarry Smith 
1286eae6fb2eSBarry Smith   /* Copy A into F->lu->A */
1287eae6fb2eSBarry Smith   ierr = MatMPIDenseCopyToPlapack(A,*F);CHKERRQ(ierr);
128801b82886SBarry Smith 
128901b82886SBarry Smith   /* Factor P A -> L U overwriting lower triangular portion of A with L, upper, U */
129001b82886SBarry Smith   info_pla = PLA_LU(lu->A,lu->pivots);
1291eae6fb2eSBarry Smith   if (info_pla) SETERRQ1(PETSC_ERR_MAT_LU_ZRPVT,"Zero pivot encountered at row %d from PLA_LU()",info_pla);
129201b82886SBarry Smith 
1293eae6fb2eSBarry Smith   (*F)->assembled    = PETSC_TRUE;
129401b82886SBarry Smith   PetscFunctionReturn(0);
129501b82886SBarry Smith }
129601b82886SBarry Smith 
129701b82886SBarry Smith #undef __FUNCT__
129801b82886SBarry Smith #define __FUNCT__ "MatCholeskyFactorNumeric_MPIDense"
129901b82886SBarry Smith PetscErrorCode MatCholeskyFactorNumeric_MPIDense(Mat A,MatFactorInfo *info,Mat *F)
130001b82886SBarry Smith {
130101b82886SBarry Smith   Mat_Plapack    *lu = (Mat_Plapack*)(*F)->spptr;
130201b82886SBarry Smith   PetscErrorCode ierr;
1303eae6fb2eSBarry Smith   PetscInt       info_pla;
130401b82886SBarry Smith 
130501b82886SBarry Smith   PetscFunctionBegin;
1306e0fbc2eeSBarry Smith 
1307eae6fb2eSBarry Smith   /* Copy A into F->lu->A */
1308eae6fb2eSBarry Smith   ierr = MatMPIDenseCopyToPlapack(A,*F);CHKERRQ(ierr);
130901b82886SBarry Smith 
131001b82886SBarry Smith   /* Factor P A -> Chol */
131101b82886SBarry Smith   info_pla = PLA_Chol(PLA_LOWER_TRIANGULAR,lu->A);
1312eae6fb2eSBarry Smith   if (info_pla) SETERRQ1( PETSC_ERR_MAT_CH_ZRPVT,"Nonpositive definite matrix detected at row %d from PLA_Chol()",info_pla);
131301b82886SBarry Smith 
1314eae6fb2eSBarry Smith   (*F)->assembled = PETSC_TRUE;
131501b82886SBarry Smith   PetscFunctionReturn(0);
131601b82886SBarry Smith }
131701b82886SBarry Smith 
1318eae6fb2eSBarry Smith 
131901b82886SBarry Smith #undef __FUNCT__
132001b82886SBarry Smith #define __FUNCT__ "MatFactorSymbolic_MPIDense_Private"
132101b82886SBarry Smith PetscErrorCode MatFactorSymbolic_MPIDense_Private(Mat A,MatFactorInfo *info,Mat *F)
132201b82886SBarry Smith {
132301b82886SBarry Smith   PetscErrorCode ierr;
132401b82886SBarry Smith 
132501b82886SBarry Smith   PetscFunctionBegin;
132601b82886SBarry Smith   /* Create the factorization matrix */
1327eae6fb2eSBarry Smith   ierr = MatCreate(((PetscObject)A)->comm,F);CHKERRQ(ierr);
1328eae6fb2eSBarry Smith   ierr = MatSetSizes(*F,A->rmap.n,A->cmap.n,A->rmap.N,A->cmap.N);CHKERRQ(ierr);
1329eae6fb2eSBarry Smith   ierr = MatSetType(*F,((PetscObject)A)->type_name);CHKERRQ(ierr);
1330eae6fb2eSBarry Smith   ierr = MatMPIDenseCreatePlapack(*F);CHKERRQ(ierr);
133101b82886SBarry Smith   PetscFunctionReturn(0);
133201b82886SBarry Smith }
133301b82886SBarry Smith 
133401b82886SBarry Smith /* Note the Petsc r and c permutations are ignored */
133501b82886SBarry Smith #undef __FUNCT__
133601b82886SBarry Smith #define __FUNCT__ "MatLUFactorSymbolic_MPIDense"
133701b82886SBarry Smith PetscErrorCode MatLUFactorSymbolic_MPIDense(Mat A,IS r,IS c,MatFactorInfo *info,Mat *F)
133801b82886SBarry Smith {
133901b82886SBarry Smith   PetscErrorCode ierr;
1340e1156936SBarry Smith   PetscInt       M = A->rmap.N;
1341e1156936SBarry Smith   Mat_Plapack    *lu;
134201b82886SBarry Smith 
134301b82886SBarry Smith   PetscFunctionBegin;
134401b82886SBarry Smith   ierr = MatFactorSymbolic_MPIDense_Private(A,info,F);CHKERRQ(ierr);
1345e1156936SBarry Smith   lu = (Mat_Plapack*)(*F)->spptr;
1346e1156936SBarry Smith   ierr = PLA_Mvector_create(MPI_INT,M,1,lu->templ,PLA_ALIGN_FIRST,&lu->pivots);CHKERRQ(ierr);
134701b82886SBarry Smith   (*F)->factor = FACTOR_LU;
134801b82886SBarry Smith   PetscFunctionReturn(0);
134901b82886SBarry Smith }
135001b82886SBarry Smith 
135101b82886SBarry Smith /* Note the Petsc perm permutation is ignored */
135201b82886SBarry Smith #undef __FUNCT__
135301b82886SBarry Smith #define __FUNCT__ "MatCholeskyFactorSymbolic_MPIDense"
135401b82886SBarry Smith PetscErrorCode MatCholeskyFactorSymbolic_MPIDense(Mat A,IS perm,MatFactorInfo *info,Mat *F)
135501b82886SBarry Smith {
135601b82886SBarry Smith   PetscErrorCode ierr;
135701b82886SBarry Smith   PetscTruth     issymmetric,set;
135801b82886SBarry Smith 
135901b82886SBarry Smith   PetscFunctionBegin;
136001b82886SBarry Smith   ierr = MatIsSymmetricKnown(A,&set,&issymmetric); CHKERRQ(ierr);
136101b82886SBarry Smith   if (!set || !issymmetric) SETERRQ(PETSC_ERR_USER,"Matrix must be set as MAT_SYMMETRIC for CholeskyFactor()");
136201b82886SBarry Smith   ierr = MatFactorSymbolic_MPIDense_Private(A,info,F);CHKERRQ(ierr);
136301b82886SBarry Smith   (*F)->factor = FACTOR_CHOLESKY;
136401b82886SBarry Smith   PetscFunctionReturn(0);
136501b82886SBarry Smith }
136601b82886SBarry Smith #endif
136701b82886SBarry Smith 
13688965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/
136909dc0095SBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIDense,
137009dc0095SBarry Smith        MatGetRow_MPIDense,
137109dc0095SBarry Smith        MatRestoreRow_MPIDense,
137209dc0095SBarry Smith        MatMult_MPIDense,
137397304618SKris Buschelman /* 4*/ MatMultAdd_MPIDense,
13747c922b88SBarry Smith        MatMultTranspose_MPIDense,
13757c922b88SBarry Smith        MatMultTransposeAdd_MPIDense,
137601b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK)
137701b82886SBarry Smith        MatSolve_MPIDense,
137801b82886SBarry Smith #else
13798965ea79SLois Curfman McInnes        0,
138001b82886SBarry Smith #endif
138109dc0095SBarry Smith        0,
138209dc0095SBarry Smith        0,
138397304618SKris Buschelman /*10*/ 0,
138409dc0095SBarry Smith        0,
138509dc0095SBarry Smith        0,
138609dc0095SBarry Smith        0,
138709dc0095SBarry Smith        MatTranspose_MPIDense,
138897304618SKris Buschelman /*15*/ MatGetInfo_MPIDense,
13896e4ee0c6SHong Zhang        MatEqual_MPIDense,
139009dc0095SBarry Smith        MatGetDiagonal_MPIDense,
13915b2fa520SLois Curfman McInnes        MatDiagonalScale_MPIDense,
139209dc0095SBarry Smith        MatNorm_MPIDense,
139397304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIDense,
139409dc0095SBarry Smith        MatAssemblyEnd_MPIDense,
139509dc0095SBarry Smith        0,
139609dc0095SBarry Smith        MatSetOption_MPIDense,
139709dc0095SBarry Smith        MatZeroEntries_MPIDense,
139897304618SKris Buschelman /*25*/ MatZeroRows_MPIDense,
139901b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK)
14000ad19415SHong Zhang        MatLUFactorSymbolic_MPIDense,
140101b82886SBarry Smith        MatLUFactorNumeric_MPIDense,
14020ad19415SHong Zhang        MatCholeskyFactorSymbolic_MPIDense,
140301b82886SBarry Smith        MatCholeskyFactorNumeric_MPIDense,
140401b82886SBarry Smith #else
1405919b68f7SBarry Smith        0,
140601b82886SBarry Smith        0,
140701b82886SBarry Smith        0,
140801b82886SBarry Smith        0,
140901b82886SBarry Smith #endif
141097304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPIDense,
1411273d9f13SBarry Smith        0,
141209dc0095SBarry Smith        0,
141309dc0095SBarry Smith        MatGetArray_MPIDense,
141409dc0095SBarry Smith        MatRestoreArray_MPIDense,
141597304618SKris Buschelman /*35*/ MatDuplicate_MPIDense,
141609dc0095SBarry Smith        0,
141709dc0095SBarry Smith        0,
141809dc0095SBarry Smith        0,
141909dc0095SBarry Smith        0,
142097304618SKris Buschelman /*40*/ 0,
14212ce60cd0SSatish Balay        MatGetSubMatrices_MPIDense,
142209dc0095SBarry Smith        0,
142309dc0095SBarry Smith        MatGetValues_MPIDense,
142409dc0095SBarry Smith        0,
142597304618SKris Buschelman /*45*/ 0,
142609dc0095SBarry Smith        MatScale_MPIDense,
142709dc0095SBarry Smith        0,
142809dc0095SBarry Smith        0,
142909dc0095SBarry Smith        0,
1430521d7252SBarry Smith /*50*/ 0,
143109dc0095SBarry Smith        0,
143209dc0095SBarry Smith        0,
143309dc0095SBarry Smith        0,
143409dc0095SBarry Smith        0,
143597304618SKris Buschelman /*55*/ 0,
143609dc0095SBarry Smith        0,
143709dc0095SBarry Smith        0,
143809dc0095SBarry Smith        0,
143909dc0095SBarry Smith        0,
144097304618SKris Buschelman /*60*/ MatGetSubMatrix_MPIDense,
1441b9b97703SBarry Smith        MatDestroy_MPIDense,
1442b9b97703SBarry Smith        MatView_MPIDense,
1443357abbc8SBarry Smith        0,
144497304618SKris Buschelman        0,
144597304618SKris Buschelman /*65*/ 0,
144697304618SKris Buschelman        0,
144797304618SKris Buschelman        0,
144897304618SKris Buschelman        0,
144997304618SKris Buschelman        0,
145097304618SKris Buschelman /*70*/ 0,
145197304618SKris Buschelman        0,
145297304618SKris Buschelman        0,
145397304618SKris Buschelman        0,
145497304618SKris Buschelman        0,
145597304618SKris Buschelman /*75*/ 0,
145697304618SKris Buschelman        0,
145797304618SKris Buschelman        0,
145897304618SKris Buschelman        0,
145997304618SKris Buschelman        0,
146097304618SKris Buschelman /*80*/ 0,
146197304618SKris Buschelman        0,
146297304618SKris Buschelman        0,
146397304618SKris Buschelman        0,
1464865e5f61SKris Buschelman /*84*/ MatLoad_MPIDense,
1465865e5f61SKris Buschelman        0,
1466865e5f61SKris Buschelman        0,
1467865e5f61SKris Buschelman        0,
1468865e5f61SKris Buschelman        0,
1469865e5f61SKris Buschelman        0,
14702fbe02b9SBarry Smith /*90*/
14712fbe02b9SBarry Smith #if defined(PETSC_HAVE_PLAPACK)
14722fbe02b9SBarry Smith        MatMatMult_MPIDense_MPIDense,
14734ae313f4SHong Zhang        MatMatMultSymbolic_MPIDense_MPIDense,
14742fbe02b9SBarry Smith        MatMatMultNumeric_MPIDense_MPIDense,
14752fbe02b9SBarry Smith #else
1476865e5f61SKris Buschelman        0,
1477865e5f61SKris Buschelman        0,
1478865e5f61SKris Buschelman        0,
14792fbe02b9SBarry Smith #endif
14802fbe02b9SBarry Smith        0,
1481865e5f61SKris Buschelman /*95*/ 0,
1482865e5f61SKris Buschelman        0,
1483865e5f61SKris Buschelman        0,
1484865e5f61SKris Buschelman        0};
14858965ea79SLois Curfman McInnes 
1486273d9f13SBarry Smith EXTERN_C_BEGIN
14874a2ae208SSatish Balay #undef __FUNCT__
1488a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIDenseSetPreallocation_MPIDense"
1489be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIDenseSetPreallocation_MPIDense(Mat mat,PetscScalar *data)
1490a23d5eceSKris Buschelman {
1491a23d5eceSKris Buschelman   Mat_MPIDense   *a;
1492dfbe8321SBarry Smith   PetscErrorCode ierr;
1493a23d5eceSKris Buschelman 
1494a23d5eceSKris Buschelman   PetscFunctionBegin;
1495a23d5eceSKris Buschelman   mat->preallocated = PETSC_TRUE;
1496a23d5eceSKris Buschelman   /* Note:  For now, when data is specified above, this assumes the user correctly
1497a23d5eceSKris Buschelman    allocates the local dense storage space.  We should add error checking. */
1498a23d5eceSKris Buschelman 
1499a23d5eceSKris Buschelman   a    = (Mat_MPIDense*)mat->data;
1500f69a0ea3SMatthew Knepley   ierr = MatCreate(PETSC_COMM_SELF,&a->A);CHKERRQ(ierr);
1501899cda47SBarry Smith   ierr = MatSetSizes(a->A,mat->rmap.n,mat->cmap.N,mat->rmap.n,mat->cmap.N);CHKERRQ(ierr);
15025c5985e7SKris Buschelman   ierr = MatSetType(a->A,MATSEQDENSE);CHKERRQ(ierr);
15035c5985e7SKris Buschelman   ierr = MatSeqDenseSetPreallocation(a->A,data);CHKERRQ(ierr);
150452e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr);
1505a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1506a23d5eceSKris Buschelman }
1507a23d5eceSKris Buschelman EXTERN_C_END
1508a23d5eceSKris Buschelman 
15097878bbefSBarry Smith EXTERN_C_BEGIN
15107878bbefSBarry Smith #if defined(PETSC_HAVE_PLAPACK)
15117878bbefSBarry Smith #undef __FUNCT__
15127878bbefSBarry Smith #define __FUNCT__ "MatSetSolverType_MPIDense_PLAPACK"
15137878bbefSBarry Smith PetscErrorCode PETSCMAT_DLLEXPORT MatSetSolverType_MPIDense_PLAPACK(Mat mat,const char *type)
15147878bbefSBarry Smith {
15157878bbefSBarry Smith   PetscFunctionBegin;
15167878bbefSBarry Smith   /* dummy function so that -mat_solver_type plapack or MatSetSolverType(mat,"plapack"); silently work (since PLAPACK is on by default) */
15177878bbefSBarry Smith   PetscFunctionReturn(0);
15187878bbefSBarry Smith }
15197878bbefSBarry Smith #endif
15207a667e6fSSatish Balay EXTERN_C_END
15217878bbefSBarry Smith 
15220bad9183SKris Buschelman /*MC
1523fafad747SKris Buschelman    MATMPIDENSE - MATMPIDENSE = "mpidense" - A matrix type to be used for distributed dense matrices.
15240bad9183SKris Buschelman 
15250bad9183SKris Buschelman    Options Database Keys:
15260bad9183SKris Buschelman . -mat_type mpidense - sets the matrix type to "mpidense" during a call to MatSetFromOptions()
15270bad9183SKris Buschelman 
15280bad9183SKris Buschelman   Level: beginner
15290bad9183SKris Buschelman 
15307878bbefSBarry Smith   MATMPIDENSE matrices may use direct solvers (LU, Cholesky, and QR)
15317878bbefSBarry Smith   for parallel dense matrices via the external package PLAPACK, if PLAPACK is installed
15327878bbefSBarry Smith   (run config/configure.py with the option --download-plapack)
15337878bbefSBarry Smith 
15347878bbefSBarry Smith 
15357878bbefSBarry Smith   Options Database Keys:
15367878bbefSBarry Smith . -mat_plapack_nprows <n> - number of rows in processor partition
15377878bbefSBarry Smith . -mat_plapack_npcols <n> - number of columns in processor partition
15387878bbefSBarry Smith . -mat_plapack_nb <n> - block size of template vector
15397878bbefSBarry Smith . -mat_plapack_nb_alg <n> - algorithmic block size
15407878bbefSBarry Smith - -mat_plapack_ckerror <n> - error checking flag
15417878bbefSBarry Smith 
15427878bbefSBarry Smith .seealso: MatCreateMPIDense(), MATDENSE, MATSEQDENSE
15430bad9183SKris Buschelman M*/
15440bad9183SKris Buschelman 
1545a23d5eceSKris Buschelman EXTERN_C_BEGIN
1546a23d5eceSKris Buschelman #undef __FUNCT__
15474a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIDense"
1548be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPIDense(Mat mat)
1549273d9f13SBarry Smith {
1550273d9f13SBarry Smith   Mat_MPIDense   *a;
1551dfbe8321SBarry Smith   PetscErrorCode ierr;
1552273d9f13SBarry Smith 
1553273d9f13SBarry Smith   PetscFunctionBegin;
155438f2d2fdSLisandro Dalcin   ierr              = PetscNewLog(mat,Mat_MPIDense,&a);CHKERRQ(ierr);
1555b0a32e0cSBarry Smith   mat->data         = (void*)a;
1556273d9f13SBarry Smith   ierr              = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1557273d9f13SBarry Smith   mat->factor       = 0;
1558273d9f13SBarry Smith   mat->mapping      = 0;
1559273d9f13SBarry Smith 
1560273d9f13SBarry Smith   mat->insertmode = NOT_SET_VALUES;
15617adad957SLisandro Dalcin   ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&a->rank);CHKERRQ(ierr);
15627adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)mat)->comm,&a->size);CHKERRQ(ierr);
1563273d9f13SBarry Smith 
1564899cda47SBarry Smith   mat->rmap.bs = mat->cmap.bs = 1;
15656148ca0dSBarry Smith   ierr = PetscMapSetUp(&mat->rmap);CHKERRQ(ierr);
15666148ca0dSBarry Smith   ierr = PetscMapSetUp(&mat->cmap);CHKERRQ(ierr);
1567899cda47SBarry Smith   a->nvec = mat->cmap.n;
1568273d9f13SBarry Smith 
1569273d9f13SBarry Smith   /* build cache for off array entries formed */
1570273d9f13SBarry Smith   a->donotstash = PETSC_FALSE;
15717adad957SLisandro Dalcin   ierr = MatStashCreate_Private(((PetscObject)mat)->comm,1,&mat->stash);CHKERRQ(ierr);
1572273d9f13SBarry Smith 
1573273d9f13SBarry Smith   /* stuff used for matrix vector multiply */
1574273d9f13SBarry Smith   a->lvec        = 0;
1575273d9f13SBarry Smith   a->Mvctx       = 0;
1576273d9f13SBarry Smith   a->roworiented = PETSC_TRUE;
1577273d9f13SBarry Smith 
1578273d9f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatGetDiagonalBlock_C",
1579273d9f13SBarry Smith                                      "MatGetDiagonalBlock_MPIDense",
1580273d9f13SBarry Smith                                      MatGetDiagonalBlock_MPIDense);CHKERRQ(ierr);
1581a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMPIDenseSetPreallocation_C",
1582a23d5eceSKris Buschelman                                      "MatMPIDenseSetPreallocation_MPIDense",
1583a23d5eceSKris Buschelman                                      MatMPIDenseSetPreallocation_MPIDense);CHKERRQ(ierr);
15844ae313f4SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMatMult_mpiaij_mpidense_C",
15854ae313f4SHong Zhang                                      "MatMatMult_MPIAIJ_MPIDense",
15864ae313f4SHong Zhang                                       MatMatMult_MPIAIJ_MPIDense);CHKERRQ(ierr);
15874ae313f4SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C",
15884ae313f4SHong Zhang                                      "MatMatMultSymbolic_MPIAIJ_MPIDense",
15894ae313f4SHong Zhang                                       MatMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr);
15904ae313f4SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C",
15914ae313f4SHong Zhang                                      "MatMatMultNumeric_MPIAIJ_MPIDense",
15924ae313f4SHong Zhang                                       MatMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr);
15937878bbefSBarry Smith #if defined(PETSC_HAVE_PLAPACK)
15947878bbefSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatSetSolverType_mpidense_plapack_C",
15957878bbefSBarry Smith                                      "MatSetSolverType_MPIDense_PLAPACK",
15967878bbefSBarry Smith                                       MatSetSolverType_MPIDense_PLAPACK);CHKERRQ(ierr);
15977878bbefSBarry Smith #endif
159838aed534SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)mat,MATMPIDENSE);CHKERRQ(ierr);
159901b82886SBarry Smith 
1600273d9f13SBarry Smith   PetscFunctionReturn(0);
1601273d9f13SBarry Smith }
1602273d9f13SBarry Smith EXTERN_C_END
1603273d9f13SBarry Smith 
1604209238afSKris Buschelman /*MC
1605002d173eSKris Buschelman    MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices.
1606209238afSKris Buschelman 
1607209238afSKris Buschelman    This matrix type is identical to MATSEQDENSE when constructed with a single process communicator,
1608209238afSKris Buschelman    and MATMPIDENSE otherwise.
1609209238afSKris Buschelman 
1610209238afSKris Buschelman    Options Database Keys:
1611209238afSKris Buschelman . -mat_type dense - sets the matrix type to "dense" during a call to MatSetFromOptions()
1612209238afSKris Buschelman 
1613209238afSKris Buschelman   Level: beginner
1614209238afSKris Buschelman 
161501b82886SBarry Smith 
1616209238afSKris Buschelman .seealso: MatCreateMPIDense,MATSEQDENSE,MATMPIDENSE
1617209238afSKris Buschelman M*/
1618209238afSKris Buschelman 
1619209238afSKris Buschelman EXTERN_C_BEGIN
1620209238afSKris Buschelman #undef __FUNCT__
1621209238afSKris Buschelman #define __FUNCT__ "MatCreate_Dense"
1622be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_Dense(Mat A)
1623dfbe8321SBarry Smith {
16246849ba73SBarry Smith   PetscErrorCode ierr;
162513f74950SBarry Smith   PetscMPIInt    size;
1626209238afSKris Buschelman 
1627209238afSKris Buschelman   PetscFunctionBegin;
16287adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr);
1629209238afSKris Buschelman   if (size == 1) {
1630209238afSKris Buschelman     ierr = MatSetType(A,MATSEQDENSE);CHKERRQ(ierr);
1631209238afSKris Buschelman   } else {
1632209238afSKris Buschelman     ierr = MatSetType(A,MATMPIDENSE);CHKERRQ(ierr);
1633209238afSKris Buschelman   }
1634209238afSKris Buschelman   PetscFunctionReturn(0);
1635209238afSKris Buschelman }
1636209238afSKris Buschelman EXTERN_C_END
1637209238afSKris Buschelman 
16384a2ae208SSatish Balay #undef __FUNCT__
16394a2ae208SSatish Balay #define __FUNCT__ "MatMPIDenseSetPreallocation"
1640273d9f13SBarry Smith /*@C
1641273d9f13SBarry Smith    MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries
1642273d9f13SBarry Smith 
1643273d9f13SBarry Smith    Not collective
1644273d9f13SBarry Smith 
1645273d9f13SBarry Smith    Input Parameters:
1646273d9f13SBarry Smith .  A - the matrix
1647273d9f13SBarry Smith -  data - optional location of matrix data.  Set data=PETSC_NULL for PETSc
1648273d9f13SBarry Smith    to control all matrix memory allocation.
1649273d9f13SBarry Smith 
1650273d9f13SBarry Smith    Notes:
1651273d9f13SBarry Smith    The dense format is fully compatible with standard Fortran 77
1652273d9f13SBarry Smith    storage by columns.
1653273d9f13SBarry Smith 
1654273d9f13SBarry Smith    The data input variable is intended primarily for Fortran programmers
1655273d9f13SBarry Smith    who wish to allocate their own matrix memory space.  Most users should
1656273d9f13SBarry Smith    set data=PETSC_NULL.
1657273d9f13SBarry Smith 
1658273d9f13SBarry Smith    Level: intermediate
1659273d9f13SBarry Smith 
1660273d9f13SBarry Smith .keywords: matrix,dense, parallel
1661273d9f13SBarry Smith 
1662273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues()
1663273d9f13SBarry Smith @*/
1664be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIDenseSetPreallocation(Mat mat,PetscScalar *data)
1665273d9f13SBarry Smith {
1666dfbe8321SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscScalar *);
1667273d9f13SBarry Smith 
1668273d9f13SBarry Smith   PetscFunctionBegin;
1669565567f0SKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
1670a23d5eceSKris Buschelman   if (f) {
1671a23d5eceSKris Buschelman     ierr = (*f)(mat,data);CHKERRQ(ierr);
1672a23d5eceSKris Buschelman   }
1673273d9f13SBarry Smith   PetscFunctionReturn(0);
1674273d9f13SBarry Smith }
1675273d9f13SBarry Smith 
16764a2ae208SSatish Balay #undef __FUNCT__
16774a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPIDense"
16788965ea79SLois Curfman McInnes /*@C
167939ddd567SLois Curfman McInnes    MatCreateMPIDense - Creates a sparse parallel matrix in dense format.
16808965ea79SLois Curfman McInnes 
1681db81eaa0SLois Curfman McInnes    Collective on MPI_Comm
1682db81eaa0SLois Curfman McInnes 
16838965ea79SLois Curfman McInnes    Input Parameters:
1684db81eaa0SLois Curfman McInnes +  comm - MPI communicator
16858965ea79SLois Curfman McInnes .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1686db81eaa0SLois Curfman McInnes .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
16878965ea79SLois Curfman McInnes .  M - number of global rows (or PETSC_DECIDE to have calculated if m is given)
1688db81eaa0SLois Curfman McInnes .  N - number of global columns (or PETSC_DECIDE to have calculated if n is given)
16897f5ff6fdSBarry Smith -  data - optional location of matrix data.  Set data=PETSC_NULL (PETSC_NULL_SCALAR for Fortran users) for PETSc
1690dfc5480cSLois Curfman McInnes    to control all matrix memory allocation.
16918965ea79SLois Curfman McInnes 
16928965ea79SLois Curfman McInnes    Output Parameter:
1693477f1c0bSLois Curfman McInnes .  A - the matrix
16948965ea79SLois Curfman McInnes 
1695b259b22eSLois Curfman McInnes    Notes:
169639ddd567SLois Curfman McInnes    The dense format is fully compatible with standard Fortran 77
169739ddd567SLois Curfman McInnes    storage by columns.
16988965ea79SLois Curfman McInnes 
169918f449edSLois Curfman McInnes    The data input variable is intended primarily for Fortran programmers
170018f449edSLois Curfman McInnes    who wish to allocate their own matrix memory space.  Most users should
17017f5ff6fdSBarry Smith    set data=PETSC_NULL (PETSC_NULL_SCALAR for Fortran users).
170218f449edSLois Curfman McInnes 
17038965ea79SLois Curfman McInnes    The user MUST specify either the local or global matrix dimensions
17048965ea79SLois Curfman McInnes    (possibly both).
17058965ea79SLois Curfman McInnes 
1706027ccd11SLois Curfman McInnes    Level: intermediate
1707027ccd11SLois Curfman McInnes 
170839ddd567SLois Curfman McInnes .keywords: matrix,dense, parallel
17098965ea79SLois Curfman McInnes 
171039ddd567SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues()
17118965ea79SLois Curfman McInnes @*/
1712be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPIDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A)
17138965ea79SLois Curfman McInnes {
17146849ba73SBarry Smith   PetscErrorCode ierr;
171513f74950SBarry Smith   PetscMPIInt    size;
17168965ea79SLois Curfman McInnes 
17173a40ed3dSBarry Smith   PetscFunctionBegin;
1718f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
1719f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
1720273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
1721273d9f13SBarry Smith   if (size > 1) {
1722273d9f13SBarry Smith     ierr = MatSetType(*A,MATMPIDENSE);CHKERRQ(ierr);
1723273d9f13SBarry Smith     ierr = MatMPIDenseSetPreallocation(*A,data);CHKERRQ(ierr);
1724273d9f13SBarry Smith   } else {
1725273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr);
1726273d9f13SBarry Smith     ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr);
17278c469469SLois Curfman McInnes   }
17283a40ed3dSBarry Smith   PetscFunctionReturn(0);
17298965ea79SLois Curfman McInnes }
17308965ea79SLois Curfman McInnes 
17314a2ae208SSatish Balay #undef __FUNCT__
17324a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIDense"
17336849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat)
17348965ea79SLois Curfman McInnes {
17358965ea79SLois Curfman McInnes   Mat            mat;
17363501a2bdSLois Curfman McInnes   Mat_MPIDense   *a,*oldmat = (Mat_MPIDense*)A->data;
1737dfbe8321SBarry Smith   PetscErrorCode ierr;
17388965ea79SLois Curfman McInnes 
17393a40ed3dSBarry Smith   PetscFunctionBegin;
17408965ea79SLois Curfman McInnes   *newmat       = 0;
17417adad957SLisandro Dalcin   ierr = MatCreate(((PetscObject)A)->comm,&mat);CHKERRQ(ierr);
1742899cda47SBarry Smith   ierr = MatSetSizes(mat,A->rmap.n,A->cmap.n,A->rmap.N,A->cmap.N);CHKERRQ(ierr);
17437adad957SLisandro Dalcin   ierr = MatSetType(mat,((PetscObject)A)->type_name);CHKERRQ(ierr);
1744834f8fabSBarry Smith   a                 = (Mat_MPIDense*)mat->data;
1745e04c1aa4SHong Zhang   ierr              = PetscMemcpy(mat->ops,A->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
17463501a2bdSLois Curfman McInnes   mat->factor       = A->factor;
1747c456f294SBarry Smith   mat->assembled    = PETSC_TRUE;
1748273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
17498965ea79SLois Curfman McInnes 
1750899cda47SBarry Smith   mat->rmap.rstart     = A->rmap.rstart;
1751899cda47SBarry Smith   mat->rmap.rend       = A->rmap.rend;
17528965ea79SLois Curfman McInnes   a->size              = oldmat->size;
17538965ea79SLois Curfman McInnes   a->rank              = oldmat->rank;
1754e0fa3b82SLois Curfman McInnes   mat->insertmode      = NOT_SET_VALUES;
1755b9b97703SBarry Smith   a->nvec              = oldmat->nvec;
17563782ba37SSatish Balay   a->donotstash        = oldmat->donotstash;
1757e04c1aa4SHong Zhang 
1758899cda47SBarry Smith   ierr = PetscMemcpy(mat->rmap.range,A->rmap.range,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr);
1759899cda47SBarry Smith   ierr = PetscMemcpy(mat->cmap.range,A->cmap.range,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr);
17607adad957SLisandro Dalcin   ierr = MatStashCreate_Private(((PetscObject)A)->comm,1,&mat->stash);CHKERRQ(ierr);
17618965ea79SLois Curfman McInnes 
1762329f5518SBarry Smith   ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr);
17635609ef8eSBarry Smith   ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
176452e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr);
176501b82886SBarry Smith 
176601b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK)
176701b82886SBarry Smith   ierr = PetscMemcpy(mat->spptr,A->spptr,sizeof(Mat_Plapack));CHKERRQ(ierr);
176801b82886SBarry Smith #endif
17698965ea79SLois Curfman McInnes   *newmat = mat;
17703a40ed3dSBarry Smith   PetscFunctionReturn(0);
17718965ea79SLois Curfman McInnes }
17728965ea79SLois Curfman McInnes 
1773e090d566SSatish Balay #include "petscsys.h"
17748965ea79SLois Curfman McInnes 
17754a2ae208SSatish Balay #undef __FUNCT__
17764a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIDense_DenseInFile"
1777f69a0ea3SMatthew Knepley PetscErrorCode MatLoad_MPIDense_DenseInFile(MPI_Comm comm,PetscInt fd,PetscInt M,PetscInt N, MatType type,Mat *newmat)
177890ace30eSBarry Smith {
17796849ba73SBarry Smith   PetscErrorCode ierr;
178032dcc486SBarry Smith   PetscMPIInt    rank,size;
178113f74950SBarry Smith   PetscInt       *rowners,i,m,nz,j;
178287828ca2SBarry Smith   PetscScalar    *array,*vals,*vals_ptr;
178390ace30eSBarry Smith   MPI_Status     status;
178490ace30eSBarry Smith 
17853a40ed3dSBarry Smith   PetscFunctionBegin;
1786d132466eSBarry Smith   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
1787d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
178890ace30eSBarry Smith 
178990ace30eSBarry Smith   /* determine ownership of all rows */
179090ace30eSBarry Smith   m          = M/size + ((M % size) > rank);
179113f74950SBarry Smith   ierr       = PetscMalloc((size+2)*sizeof(PetscInt),&rowners);CHKERRQ(ierr);
179213f74950SBarry Smith   ierr       = MPI_Allgather(&m,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr);
179390ace30eSBarry Smith   rowners[0] = 0;
179490ace30eSBarry Smith   for (i=2; i<=size; i++) {
179590ace30eSBarry Smith     rowners[i] += rowners[i-1];
179690ace30eSBarry Smith   }
179790ace30eSBarry Smith 
1798f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,newmat);CHKERRQ(ierr);
1799f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*newmat,m,PETSC_DECIDE,M,N);CHKERRQ(ierr);
1800be5d1d56SKris Buschelman   ierr = MatSetType(*newmat,type);CHKERRQ(ierr);
1801878740d9SKris Buschelman   ierr = MatMPIDenseSetPreallocation(*newmat,PETSC_NULL);CHKERRQ(ierr);
180290ace30eSBarry Smith   ierr = MatGetArray(*newmat,&array);CHKERRQ(ierr);
180390ace30eSBarry Smith 
180490ace30eSBarry Smith   if (!rank) {
180587828ca2SBarry Smith     ierr = PetscMalloc(m*N*sizeof(PetscScalar),&vals);CHKERRQ(ierr);
180690ace30eSBarry Smith 
180790ace30eSBarry Smith     /* read in my part of the matrix numerical values  */
18080752156aSBarry Smith     ierr = PetscBinaryRead(fd,vals,m*N,PETSC_SCALAR);CHKERRQ(ierr);
180990ace30eSBarry Smith 
181090ace30eSBarry Smith     /* insert into matrix-by row (this is why cannot directly read into array */
181190ace30eSBarry Smith     vals_ptr = vals;
181290ace30eSBarry Smith     for (i=0; i<m; i++) {
181390ace30eSBarry Smith       for (j=0; j<N; j++) {
181490ace30eSBarry Smith         array[i + j*m] = *vals_ptr++;
181590ace30eSBarry Smith       }
181690ace30eSBarry Smith     }
181790ace30eSBarry Smith 
181890ace30eSBarry Smith     /* read in other processors and ship out */
181990ace30eSBarry Smith     for (i=1; i<size; i++) {
182090ace30eSBarry Smith       nz   = (rowners[i+1] - rowners[i])*N;
18210752156aSBarry Smith       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
18227adad957SLisandro Dalcin       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)(*newmat))->tag,comm);CHKERRQ(ierr);
182390ace30eSBarry Smith     }
18243a40ed3dSBarry Smith   } else {
182590ace30eSBarry Smith     /* receive numeric values */
182687828ca2SBarry Smith     ierr = PetscMalloc(m*N*sizeof(PetscScalar),&vals);CHKERRQ(ierr);
182790ace30eSBarry Smith 
182890ace30eSBarry Smith     /* receive message of values*/
18297adad957SLisandro Dalcin     ierr = MPI_Recv(vals,m*N,MPIU_SCALAR,0,((PetscObject)(*newmat))->tag,comm,&status);CHKERRQ(ierr);
183090ace30eSBarry Smith 
183190ace30eSBarry Smith     /* insert into matrix-by row (this is why cannot directly read into array */
183290ace30eSBarry Smith     vals_ptr = vals;
183390ace30eSBarry Smith     for (i=0; i<m; i++) {
183490ace30eSBarry Smith       for (j=0; j<N; j++) {
183590ace30eSBarry Smith         array[i + j*m] = *vals_ptr++;
183690ace30eSBarry Smith       }
183790ace30eSBarry Smith     }
183890ace30eSBarry Smith   }
1839606d414cSSatish Balay   ierr = PetscFree(rowners);CHKERRQ(ierr);
1840606d414cSSatish Balay   ierr = PetscFree(vals);CHKERRQ(ierr);
18416d4a8577SBarry Smith   ierr = MatAssemblyBegin(*newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
18426d4a8577SBarry Smith   ierr = MatAssemblyEnd(*newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
18433a40ed3dSBarry Smith   PetscFunctionReturn(0);
184490ace30eSBarry Smith }
184590ace30eSBarry Smith 
18464a2ae208SSatish Balay #undef __FUNCT__
18474a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIDense"
1848f69a0ea3SMatthew Knepley PetscErrorCode MatLoad_MPIDense(PetscViewer viewer, MatType type,Mat *newmat)
18498965ea79SLois Curfman McInnes {
18508965ea79SLois Curfman McInnes   Mat            A;
185187828ca2SBarry Smith   PetscScalar    *vals,*svals;
185219bcc07fSBarry Smith   MPI_Comm       comm = ((PetscObject)viewer)->comm;
18538965ea79SLois Curfman McInnes   MPI_Status     status;
185413f74950SBarry Smith   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*rowners,*sndcounts,m,maxnz;
185513f74950SBarry Smith   PetscInt       header[4],*rowlengths = 0,M,N,*cols;
185613f74950SBarry Smith   PetscInt       *ourlens,*procsnz = 0,*offlens,jj,*mycols,*smycols;
185713f74950SBarry Smith   PetscInt       i,nz,j,rstart,rend;
185813f74950SBarry Smith   int            fd;
18596849ba73SBarry Smith   PetscErrorCode ierr;
18608965ea79SLois Curfman McInnes 
18613a40ed3dSBarry Smith   PetscFunctionBegin;
1862d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
1863d132466eSBarry Smith   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
18648965ea79SLois Curfman McInnes   if (!rank) {
1865b0a32e0cSBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
18660752156aSBarry Smith     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
1867552e946dSBarry Smith     if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
18688965ea79SLois Curfman McInnes   }
18698965ea79SLois Curfman McInnes 
187013f74950SBarry Smith   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
187190ace30eSBarry Smith   M = header[1]; N = header[2]; nz = header[3];
187290ace30eSBarry Smith 
187390ace30eSBarry Smith   /*
187490ace30eSBarry Smith        Handle case where matrix is stored on disk as a dense matrix
187590ace30eSBarry Smith   */
187690ace30eSBarry Smith   if (nz == MATRIX_BINARY_FORMAT_DENSE) {
1877be5d1d56SKris Buschelman     ierr = MatLoad_MPIDense_DenseInFile(comm,fd,M,N,type,newmat);CHKERRQ(ierr);
18783a40ed3dSBarry Smith     PetscFunctionReturn(0);
187990ace30eSBarry Smith   }
188090ace30eSBarry Smith 
18818965ea79SLois Curfman McInnes   /* determine ownership of all rows */
1882e44c0bd4SBarry Smith   m          = PetscMPIIntCast(M/size + ((M % size) > rank));
1883e44c0bd4SBarry Smith   ierr       = PetscMalloc((size+2)*sizeof(PetscMPIInt),&rowners);CHKERRQ(ierr);
1884ca161407SBarry Smith   ierr       = MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
18858965ea79SLois Curfman McInnes   rowners[0] = 0;
18868965ea79SLois Curfman McInnes   for (i=2; i<=size; i++) {
18878965ea79SLois Curfman McInnes     rowners[i] += rowners[i-1];
18888965ea79SLois Curfman McInnes   }
18898965ea79SLois Curfman McInnes   rstart = rowners[rank];
18908965ea79SLois Curfman McInnes   rend   = rowners[rank+1];
18918965ea79SLois Curfman McInnes 
18928965ea79SLois Curfman McInnes   /* distribute row lengths to all processors */
189313f74950SBarry Smith   ierr    = PetscMalloc(2*(rend-rstart+1)*sizeof(PetscInt),&ourlens);CHKERRQ(ierr);
18948965ea79SLois Curfman McInnes   offlens = ourlens + (rend-rstart);
18958965ea79SLois Curfman McInnes   if (!rank) {
189613f74950SBarry Smith     ierr = PetscMalloc(M*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
18970752156aSBarry Smith     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
189813f74950SBarry Smith     ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr);
18998965ea79SLois Curfman McInnes     for (i=0; i<size; i++) sndcounts[i] = rowners[i+1] - rowners[i];
19001466f1e1SBarry Smith     ierr = MPI_Scatterv(rowlengths,sndcounts,rowners,MPIU_INT,ourlens,rend-rstart,MPIU_INT,0,comm);CHKERRQ(ierr);
1901606d414cSSatish Balay     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
1902ca161407SBarry Smith   } else {
19031466f1e1SBarry Smith     ierr = MPI_Scatterv(0,0,0,MPIU_INT,ourlens,rend-rstart,MPIU_INT,0,comm);CHKERRQ(ierr);
19048965ea79SLois Curfman McInnes   }
19058965ea79SLois Curfman McInnes 
19068965ea79SLois Curfman McInnes   if (!rank) {
19078965ea79SLois Curfman McInnes     /* calculate the number of nonzeros on each processor */
190813f74950SBarry Smith     ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr);
190913f74950SBarry Smith     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
19108965ea79SLois Curfman McInnes     for (i=0; i<size; i++) {
19118965ea79SLois Curfman McInnes       for (j=rowners[i]; j< rowners[i+1]; j++) {
19128965ea79SLois Curfman McInnes         procsnz[i] += rowlengths[j];
19138965ea79SLois Curfman McInnes       }
19148965ea79SLois Curfman McInnes     }
1915606d414cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
19168965ea79SLois Curfman McInnes 
19178965ea79SLois Curfman McInnes     /* determine max buffer needed and allocate it */
19188965ea79SLois Curfman McInnes     maxnz = 0;
19198965ea79SLois Curfman McInnes     for (i=0; i<size; i++) {
19200452661fSBarry Smith       maxnz = PetscMax(maxnz,procsnz[i]);
19218965ea79SLois Curfman McInnes     }
192213f74950SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr);
19238965ea79SLois Curfman McInnes 
19248965ea79SLois Curfman McInnes     /* read in my part of the matrix column indices  */
19258965ea79SLois Curfman McInnes     nz = procsnz[0];
192613f74950SBarry Smith     ierr = PetscMalloc(nz*sizeof(PetscInt),&mycols);CHKERRQ(ierr);
19270752156aSBarry Smith     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
19288965ea79SLois Curfman McInnes 
19298965ea79SLois Curfman McInnes     /* read in every one elses and ship off */
19308965ea79SLois Curfman McInnes     for (i=1; i<size; i++) {
19318965ea79SLois Curfman McInnes       nz   = procsnz[i];
19320752156aSBarry Smith       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
193313f74950SBarry Smith       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
19348965ea79SLois Curfman McInnes     }
1935606d414cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
19363a40ed3dSBarry Smith   } else {
19378965ea79SLois Curfman McInnes     /* determine buffer space needed for message */
19388965ea79SLois Curfman McInnes     nz = 0;
19398965ea79SLois Curfman McInnes     for (i=0; i<m; i++) {
19408965ea79SLois Curfman McInnes       nz += ourlens[i];
19418965ea79SLois Curfman McInnes     }
194213f74950SBarry Smith     ierr = PetscMalloc((nz+1)*sizeof(PetscInt),&mycols);CHKERRQ(ierr);
19438965ea79SLois Curfman McInnes 
19448965ea79SLois Curfman McInnes     /* receive message of column indices*/
194513f74950SBarry Smith     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
194613f74950SBarry Smith     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
194729bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
19488965ea79SLois Curfman McInnes   }
19498965ea79SLois Curfman McInnes 
19508965ea79SLois Curfman McInnes   /* loop over local rows, determining number of off diagonal entries */
195113f74950SBarry Smith   ierr = PetscMemzero(offlens,m*sizeof(PetscInt));CHKERRQ(ierr);
19528965ea79SLois Curfman McInnes   jj = 0;
19538965ea79SLois Curfman McInnes   for (i=0; i<m; i++) {
19548965ea79SLois Curfman McInnes     for (j=0; j<ourlens[i]; j++) {
19558965ea79SLois Curfman McInnes       if (mycols[jj] < rstart || mycols[jj] >= rend) offlens[i]++;
19568965ea79SLois Curfman McInnes       jj++;
19578965ea79SLois Curfman McInnes     }
19588965ea79SLois Curfman McInnes   }
19598965ea79SLois Curfman McInnes 
19608965ea79SLois Curfman McInnes   /* create our matrix */
19618965ea79SLois Curfman McInnes   for (i=0; i<m; i++) {
19628965ea79SLois Curfman McInnes     ourlens[i] -= offlens[i];
19638965ea79SLois Curfman McInnes   }
1964f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,newmat);CHKERRQ(ierr);
1965f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*newmat,m,PETSC_DECIDE,M,N);CHKERRQ(ierr);
1966be5d1d56SKris Buschelman   ierr = MatSetType(*newmat,type);CHKERRQ(ierr);
1967878740d9SKris Buschelman   ierr = MatMPIDenseSetPreallocation(*newmat,PETSC_NULL);CHKERRQ(ierr);
19688965ea79SLois Curfman McInnes   A = *newmat;
19698965ea79SLois Curfman McInnes   for (i=0; i<m; i++) {
19708965ea79SLois Curfman McInnes     ourlens[i] += offlens[i];
19718965ea79SLois Curfman McInnes   }
19728965ea79SLois Curfman McInnes 
19738965ea79SLois Curfman McInnes   if (!rank) {
197487828ca2SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&vals);CHKERRQ(ierr);
19758965ea79SLois Curfman McInnes 
19768965ea79SLois Curfman McInnes     /* read in my part of the matrix numerical values  */
19778965ea79SLois Curfman McInnes     nz = procsnz[0];
19780752156aSBarry Smith     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
19798965ea79SLois Curfman McInnes 
19808965ea79SLois Curfman McInnes     /* insert into matrix */
19818965ea79SLois Curfman McInnes     jj      = rstart;
19828965ea79SLois Curfman McInnes     smycols = mycols;
19838965ea79SLois Curfman McInnes     svals   = vals;
19848965ea79SLois Curfman McInnes     for (i=0; i<m; i++) {
19858965ea79SLois Curfman McInnes       ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr);
19868965ea79SLois Curfman McInnes       smycols += ourlens[i];
19878965ea79SLois Curfman McInnes       svals   += ourlens[i];
19888965ea79SLois Curfman McInnes       jj++;
19898965ea79SLois Curfman McInnes     }
19908965ea79SLois Curfman McInnes 
19918965ea79SLois Curfman McInnes     /* read in other processors and ship out */
19928965ea79SLois Curfman McInnes     for (i=1; i<size; i++) {
19938965ea79SLois Curfman McInnes       nz   = procsnz[i];
19940752156aSBarry Smith       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
19957adad957SLisandro Dalcin       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)A)->tag,comm);CHKERRQ(ierr);
19968965ea79SLois Curfman McInnes     }
1997606d414cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
19983a40ed3dSBarry Smith   } else {
19998965ea79SLois Curfman McInnes     /* receive numeric values */
200084d528b1SBarry Smith     ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&vals);CHKERRQ(ierr);
20018965ea79SLois Curfman McInnes 
20028965ea79SLois Curfman McInnes     /* receive message of values*/
20037adad957SLisandro Dalcin     ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)A)->tag,comm,&status);CHKERRQ(ierr);
2004ca161407SBarry Smith     ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
200529bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
20068965ea79SLois Curfman McInnes 
20078965ea79SLois Curfman McInnes     /* insert into matrix */
20088965ea79SLois Curfman McInnes     jj      = rstart;
20098965ea79SLois Curfman McInnes     smycols = mycols;
20108965ea79SLois Curfman McInnes     svals   = vals;
20118965ea79SLois Curfman McInnes     for (i=0; i<m; i++) {
20128965ea79SLois Curfman McInnes       ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr);
20138965ea79SLois Curfman McInnes       smycols += ourlens[i];
20148965ea79SLois Curfman McInnes       svals   += ourlens[i];
20158965ea79SLois Curfman McInnes       jj++;
20168965ea79SLois Curfman McInnes     }
20178965ea79SLois Curfman McInnes   }
2018606d414cSSatish Balay   ierr = PetscFree(ourlens);CHKERRQ(ierr);
2019606d414cSSatish Balay   ierr = PetscFree(vals);CHKERRQ(ierr);
2020606d414cSSatish Balay   ierr = PetscFree(mycols);CHKERRQ(ierr);
2021606d414cSSatish Balay   ierr = PetscFree(rowners);CHKERRQ(ierr);
20228965ea79SLois Curfman McInnes 
20236d4a8577SBarry Smith   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
20246d4a8577SBarry Smith   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
20253a40ed3dSBarry Smith   PetscFunctionReturn(0);
20268965ea79SLois Curfman McInnes }
202790ace30eSBarry Smith 
20286e4ee0c6SHong Zhang #undef __FUNCT__
20296e4ee0c6SHong Zhang #define __FUNCT__ "MatEqual_MPIDense"
20306e4ee0c6SHong Zhang PetscErrorCode MatEqual_MPIDense(Mat A,Mat B,PetscTruth *flag)
20316e4ee0c6SHong Zhang {
20326e4ee0c6SHong Zhang   Mat_MPIDense   *matB = (Mat_MPIDense*)B->data,*matA = (Mat_MPIDense*)A->data;
20336e4ee0c6SHong Zhang   Mat            a,b;
20346e4ee0c6SHong Zhang   PetscTruth     flg;
20356e4ee0c6SHong Zhang   PetscErrorCode ierr;
203690ace30eSBarry Smith 
20376e4ee0c6SHong Zhang   PetscFunctionBegin;
20386e4ee0c6SHong Zhang   a = matA->A;
20396e4ee0c6SHong Zhang   b = matB->A;
20406e4ee0c6SHong Zhang   ierr = MatEqual(a,b,&flg);CHKERRQ(ierr);
20417adad957SLisandro Dalcin   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr);
20426e4ee0c6SHong Zhang   PetscFunctionReturn(0);
20436e4ee0c6SHong Zhang }
204490ace30eSBarry Smith 
204509d27a7eSBarry Smith #if defined(PETSC_HAVE_PLAPACK)
204609d27a7eSBarry Smith 
204709d27a7eSBarry Smith #undef __FUNCT__
204809d27a7eSBarry Smith #define __FUNCT__ "PetscPLAPACKFinalizePackage"
204909d27a7eSBarry Smith /*@C
205009d27a7eSBarry Smith   PetscPLAPACKFinalizePackage - This function destroys everything in the Petsc interface to PLAPACK.
205109d27a7eSBarry Smith   Level: developer
205209d27a7eSBarry Smith 
205309d27a7eSBarry Smith .keywords: Petsc, destroy, package, PLAPACK
205409d27a7eSBarry Smith .seealso: PetscFinalize()
205509d27a7eSBarry Smith @*/
205609d27a7eSBarry Smith PetscErrorCode PETSC_DLLEXPORT PetscPLAPACKFinalizePackage(void)
205709d27a7eSBarry Smith {
205809d27a7eSBarry Smith   PetscErrorCode ierr;
205909d27a7eSBarry Smith 
206009d27a7eSBarry Smith   PetscFunctionBegin;
206109d27a7eSBarry Smith   ierr = PLA_Finalize();CHKERRQ(ierr);
206209d27a7eSBarry Smith   PetscFunctionReturn(0);
206309d27a7eSBarry Smith }
206409d27a7eSBarry Smith 
206509d27a7eSBarry Smith #undef __FUNCT__
206609d27a7eSBarry Smith #define __FUNCT__ "PetscPLAPACKInitializePackage"
206709d27a7eSBarry Smith /*@C
206809d27a7eSBarry Smith   PetscPLAPACKInitializePackage - This function initializes everything in the Petsc interface to PLAPACK. It is
206909d27a7eSBarry Smith   called from PetscDLLibraryRegister() when using dynamic libraries, and on the call to PetscInitialize()
207009d27a7eSBarry Smith   when using static libraries.
207109d27a7eSBarry Smith 
207209d27a7eSBarry Smith   Input Parameter:
207309d27a7eSBarry Smith   path - The dynamic library path, or PETSC_NULL
207409d27a7eSBarry Smith 
207509d27a7eSBarry Smith   Level: developer
207609d27a7eSBarry Smith 
207709d27a7eSBarry Smith .keywords: Petsc, initialize, package, PLAPACK
207809d27a7eSBarry Smith .seealso: PetscInitializePackage(), PetscInitialize()
207909d27a7eSBarry Smith @*/
208009d27a7eSBarry Smith PetscErrorCode PETSC_DLLEXPORT PetscPLAPACKInitializePackage(const char path[])
208109d27a7eSBarry Smith {
208204fea9ffSBarry Smith   MPI_Comm       comm = PETSC_COMM_WORLD;
2083eae6fb2eSBarry Smith   PetscMPIInt    size;
208409d27a7eSBarry Smith   PetscErrorCode ierr;
208509d27a7eSBarry Smith 
208609d27a7eSBarry Smith   PetscFunctionBegin;
208709d27a7eSBarry Smith   if (!PLA_Initialized(PETSC_NULL)) {
208809d27a7eSBarry Smith 
208909d27a7eSBarry Smith     ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
209004fea9ffSBarry Smith     Plapack_nprows = 1;
209104fea9ffSBarry Smith     Plapack_npcols = size;
209209d27a7eSBarry Smith 
2093aeccfd6fSBarry Smith     ierr = PetscOptionsBegin(comm,PETSC_NULL,"PLAPACK Options","Mat");CHKERRQ(ierr);
2094aeccfd6fSBarry Smith       ierr = PetscOptionsInt("-plapack_nprows","row dimension of 2D processor mesh","None",Plapack_nprows,&Plapack_nprows,PETSC_NULL);CHKERRQ(ierr);
2095aeccfd6fSBarry Smith       ierr = PetscOptionsInt("-plapack_npcols","column dimension of 2D processor mesh","None",Plapack_npcols,&Plapack_npcols,PETSC_NULL);CHKERRQ(ierr);
209679b0a62dSBarry Smith #if defined(PETSC_USE_DEBUG)
209779b0a62dSBarry Smith       Plapack_ierror = 3;
209879b0a62dSBarry Smith #else
209979b0a62dSBarry Smith       Plapack_ierror = 0;
210079b0a62dSBarry Smith #endif
2101eae6fb2eSBarry Smith       ierr = PetscOptionsInt("-plapack_ckerror","error checking flag","None",Plapack_ierror,&Plapack_ierror,PETSC_NULL);CHKERRQ(ierr);
2102eae6fb2eSBarry Smith       if (Plapack_ierror){
2103eae6fb2eSBarry Smith 	ierr = PLA_Set_error_checking(Plapack_ierror,PETSC_TRUE,PETSC_TRUE,PETSC_FALSE );CHKERRQ(ierr);
2104aeccfd6fSBarry Smith       } else {
2105eae6fb2eSBarry Smith 	ierr = PLA_Set_error_checking(Plapack_ierror,PETSC_FALSE,PETSC_FALSE,PETSC_FALSE );CHKERRQ(ierr);
2106aeccfd6fSBarry Smith       }
2107aeccfd6fSBarry Smith 
2108eae6fb2eSBarry Smith       Plapack_nb_alg = 0;
210979b0a62dSBarry Smith       ierr = PetscOptionsInt("-plapack_nb_alg","algorithmic block size","None",Plapack_nb_alg,&Plapack_nb_alg,PETSC_NULL);CHKERRQ(ierr);
2110eae6fb2eSBarry Smith       if (Plapack_nb_alg) {
2111eae6fb2eSBarry Smith         ierr = pla_Environ_set_nb_alg (PLA_OP_ALL_ALG,Plapack_nb_alg);CHKERRQ(ierr);
2112aeccfd6fSBarry Smith       }
2113aeccfd6fSBarry Smith     PetscOptionsEnd();
2114aeccfd6fSBarry Smith 
211504fea9ffSBarry Smith     ierr = PLA_Comm_1D_to_2D(comm,Plapack_nprows,Plapack_npcols,&Plapack_comm_2d);CHKERRQ(ierr);
211604fea9ffSBarry Smith     ierr = PLA_Init(Plapack_comm_2d);CHKERRQ(ierr);
211709d27a7eSBarry Smith     ierr = PetscRegisterFinalize(PetscPLAPACKFinalizePackage);CHKERRQ(ierr);
211809d27a7eSBarry Smith   }
211909d27a7eSBarry Smith   PetscFunctionReturn(0);
212009d27a7eSBarry Smith }
212190ace30eSBarry Smith 
212290ace30eSBarry Smith 
212309d27a7eSBarry Smith #endif
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