xref: /petsc/src/mat/impls/dense/mpi/mpidense.c (revision 4ae313f42201736c22765e1d4ea08232bbac4af6)
1be1d678aSKris Buschelman #define PETSCMAT_DLL
2be1d678aSKris Buschelman 
3ed3cc1f0SBarry Smith /*
4ed3cc1f0SBarry Smith    Basic functions for basic parallel dense matrices.
5ed3cc1f0SBarry Smith */
6ed3cc1f0SBarry Smith 
789ac3759SBarry Smith #include "src/mat/impls/dense/mpi/mpidense.h"    /*I   "petscmat.h"  I*/
88965ea79SLois Curfman McInnes 
9ba8c8a56SBarry Smith #undef __FUNCT__
100ad19415SHong Zhang #define __FUNCT__ "MatLUFactorSymbolic_MPIDense"
110ad19415SHong Zhang PetscErrorCode MatLUFactorSymbolic_MPIDense(Mat A,IS row,IS col,MatFactorInfo *info,Mat *fact)
120ad19415SHong Zhang {
130ad19415SHong Zhang   PetscErrorCode ierr;
140ad19415SHong Zhang 
150ad19415SHong Zhang   PetscFunctionBegin;
166017fc9fSHong Zhang   ierr = MatDuplicate(A,MAT_DO_NOT_COPY_VALUES,fact);CHKERRQ(ierr);
170ad19415SHong Zhang   PetscFunctionReturn(0);
180ad19415SHong Zhang }
190ad19415SHong Zhang 
200ad19415SHong Zhang #undef __FUNCT__
210ad19415SHong Zhang #define __FUNCT__ "MatCholeskyFactorSymbolic_MPIDense"
226017fc9fSHong Zhang PetscErrorCode MatCholeskyFactorSymbolic_MPIDense(Mat A,IS perm,MatFactorInfo *info,Mat *fact)
230ad19415SHong Zhang {
240ad19415SHong Zhang   PetscErrorCode ierr;
250ad19415SHong Zhang 
260ad19415SHong Zhang   PetscFunctionBegin;
276017fc9fSHong Zhang   ierr = MatDuplicate(A,MAT_DO_NOT_COPY_VALUES,fact);CHKERRQ(ierr);
280ad19415SHong Zhang   PetscFunctionReturn(0);
290ad19415SHong Zhang }
300ad19415SHong Zhang 
310ad19415SHong Zhang #undef __FUNCT__
32ab92ecdeSBarry Smith #define __FUNCT__ "MatDenseGetLocalMatrix"
33ab92ecdeSBarry Smith /*@
34ab92ecdeSBarry Smith 
35ab92ecdeSBarry Smith       MatDenseGetLocalMatrix - For a MATMPIDENSE or MATSEQDENSE matrix returns the sequential
36ab92ecdeSBarry Smith               matrix that represents the operator. For sequential matrices it returns itself.
37ab92ecdeSBarry Smith 
38ab92ecdeSBarry Smith     Input Parameter:
39ab92ecdeSBarry Smith .      A - the Seq or MPI dense matrix
40ab92ecdeSBarry Smith 
41ab92ecdeSBarry Smith     Output Parameter:
42ab92ecdeSBarry Smith .      B - the inner matrix
43ab92ecdeSBarry Smith 
448e6c10adSSatish Balay     Level: intermediate
458e6c10adSSatish Balay 
46ab92ecdeSBarry Smith @*/
47ab92ecdeSBarry Smith PetscErrorCode MatDenseGetLocalMatrix(Mat A,Mat *B)
48ab92ecdeSBarry Smith {
49ab92ecdeSBarry Smith   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
50ab92ecdeSBarry Smith   PetscErrorCode ierr;
51ab92ecdeSBarry Smith   PetscTruth     flg;
52ab92ecdeSBarry Smith   PetscMPIInt    size;
53ab92ecdeSBarry Smith 
54ab92ecdeSBarry Smith   PetscFunctionBegin;
55ab92ecdeSBarry Smith   ierr = PetscTypeCompare((PetscObject)A,MATMPIDENSE,&flg);CHKERRQ(ierr);
56ab92ecdeSBarry Smith   if (!flg) {  /* this check sucks! */
57ab92ecdeSBarry Smith     ierr = PetscTypeCompare((PetscObject)A,MATDENSE,&flg);CHKERRQ(ierr);
58ab92ecdeSBarry Smith     if (flg) {
59ab92ecdeSBarry Smith       ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr);
60ab92ecdeSBarry Smith       if (size == 1) flg = PETSC_FALSE;
61ab92ecdeSBarry Smith     }
62ab92ecdeSBarry Smith   }
63ab92ecdeSBarry Smith   if (flg) {
64ab92ecdeSBarry Smith     *B = mat->A;
65ab92ecdeSBarry Smith   } else {
66ab92ecdeSBarry Smith     *B = A;
67ab92ecdeSBarry Smith   }
68ab92ecdeSBarry Smith   PetscFunctionReturn(0);
69ab92ecdeSBarry Smith }
70ab92ecdeSBarry Smith 
71ab92ecdeSBarry Smith #undef __FUNCT__
72ba8c8a56SBarry Smith #define __FUNCT__ "MatGetRow_MPIDense"
73ba8c8a56SBarry Smith PetscErrorCode MatGetRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
74ba8c8a56SBarry Smith {
75ba8c8a56SBarry Smith   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
76ba8c8a56SBarry Smith   PetscErrorCode ierr;
77899cda47SBarry Smith   PetscInt       lrow,rstart = A->rmap.rstart,rend = A->rmap.rend;
78ba8c8a56SBarry Smith 
79ba8c8a56SBarry Smith   PetscFunctionBegin;
80ba8c8a56SBarry Smith   if (row < rstart || row >= rend) SETERRQ(PETSC_ERR_SUP,"only local rows")
81ba8c8a56SBarry Smith   lrow = row - rstart;
82ba8c8a56SBarry Smith   ierr = MatGetRow(mat->A,lrow,nz,(const PetscInt **)idx,(const PetscScalar **)v);CHKERRQ(ierr);
83ba8c8a56SBarry Smith   PetscFunctionReturn(0);
84ba8c8a56SBarry Smith }
85ba8c8a56SBarry Smith 
86ba8c8a56SBarry Smith #undef __FUNCT__
87ba8c8a56SBarry Smith #define __FUNCT__ "MatRestoreRow_MPIDense"
88ba8c8a56SBarry Smith PetscErrorCode MatRestoreRow_MPIDense(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
89ba8c8a56SBarry Smith {
90ba8c8a56SBarry Smith   PetscErrorCode ierr;
91ba8c8a56SBarry Smith 
92ba8c8a56SBarry Smith   PetscFunctionBegin;
93ba8c8a56SBarry Smith   if (idx) {ierr = PetscFree(*idx);CHKERRQ(ierr);}
94ba8c8a56SBarry Smith   if (v) {ierr = PetscFree(*v);CHKERRQ(ierr);}
95ba8c8a56SBarry Smith   PetscFunctionReturn(0);
96ba8c8a56SBarry Smith }
97ba8c8a56SBarry Smith 
980de54da6SSatish Balay EXTERN_C_BEGIN
994a2ae208SSatish Balay #undef __FUNCT__
1004a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIDense"
101be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPIDense(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *B)
1020de54da6SSatish Balay {
1030de54da6SSatish Balay   Mat_MPIDense   *mdn = (Mat_MPIDense*)A->data;
1046849ba73SBarry Smith   PetscErrorCode ierr;
105899cda47SBarry Smith   PetscInt       m = A->rmap.n,rstart = A->rmap.rstart;
10687828ca2SBarry Smith   PetscScalar    *array;
1070de54da6SSatish Balay   MPI_Comm       comm;
1080de54da6SSatish Balay 
1090de54da6SSatish Balay   PetscFunctionBegin;
110899cda47SBarry Smith   if (A->rmap.N != A->cmap.N) SETERRQ(PETSC_ERR_SUP,"Only square matrices supported.");
1110de54da6SSatish Balay 
1120de54da6SSatish Balay   /* The reuse aspect is not implemented efficiently */
1130de54da6SSatish Balay   if (reuse) { ierr = MatDestroy(*B);CHKERRQ(ierr);}
1140de54da6SSatish Balay 
1150de54da6SSatish Balay   ierr = PetscObjectGetComm((PetscObject)(mdn->A),&comm);CHKERRQ(ierr);
1160de54da6SSatish Balay   ierr = MatGetArray(mdn->A,&array);CHKERRQ(ierr);
117f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,B);CHKERRQ(ierr);
118f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*B,m,m,m,m);CHKERRQ(ierr);
1195c5985e7SKris Buschelman   ierr = MatSetType(*B,mdn->A->type_name);CHKERRQ(ierr);
1205c5985e7SKris Buschelman   ierr = MatSeqDenseSetPreallocation(*B,array+m*rstart);CHKERRQ(ierr);
1210de54da6SSatish Balay   ierr = MatRestoreArray(mdn->A,&array);CHKERRQ(ierr);
1220de54da6SSatish Balay   ierr = MatAssemblyBegin(*B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1230de54da6SSatish Balay   ierr = MatAssemblyEnd(*B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1240de54da6SSatish Balay 
1250de54da6SSatish Balay   *iscopy = PETSC_TRUE;
1260de54da6SSatish Balay   PetscFunctionReturn(0);
1270de54da6SSatish Balay }
1280de54da6SSatish Balay EXTERN_C_END
1290de54da6SSatish Balay 
1304a2ae208SSatish Balay #undef __FUNCT__
1314a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIDense"
13213f74950SBarry Smith PetscErrorCode MatSetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],const PetscScalar v[],InsertMode addv)
1338965ea79SLois Curfman McInnes {
13439b7565bSBarry Smith   Mat_MPIDense   *A = (Mat_MPIDense*)mat->data;
135dfbe8321SBarry Smith   PetscErrorCode ierr;
136899cda47SBarry Smith   PetscInt       i,j,rstart = mat->rmap.rstart,rend = mat->rmap.rend,row;
137273d9f13SBarry Smith   PetscTruth     roworiented = A->roworiented;
1388965ea79SLois Curfman McInnes 
1393a40ed3dSBarry Smith   PetscFunctionBegin;
1408965ea79SLois Curfman McInnes   for (i=0; i<m; i++) {
1415ef9f2a5SBarry Smith     if (idxm[i] < 0) continue;
142899cda47SBarry Smith     if (idxm[i] >= mat->rmap.N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large");
1438965ea79SLois Curfman McInnes     if (idxm[i] >= rstart && idxm[i] < rend) {
1448965ea79SLois Curfman McInnes       row = idxm[i] - rstart;
14539b7565bSBarry Smith       if (roworiented) {
14639b7565bSBarry Smith         ierr = MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv);CHKERRQ(ierr);
1473a40ed3dSBarry Smith       } else {
1488965ea79SLois Curfman McInnes         for (j=0; j<n; j++) {
1495ef9f2a5SBarry Smith           if (idxn[j] < 0) continue;
150899cda47SBarry Smith           if (idxn[j] >= mat->cmap.N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Column too large");
15139b7565bSBarry Smith           ierr = MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv);CHKERRQ(ierr);
15239b7565bSBarry Smith         }
1538965ea79SLois Curfman McInnes       }
1543a40ed3dSBarry Smith     } else {
1553782ba37SSatish Balay       if (!A->donotstash) {
15639b7565bSBarry Smith         if (roworiented) {
1578798bf22SSatish Balay           ierr = MatStashValuesRow_Private(&mat->stash,idxm[i],n,idxn,v+i*n);CHKERRQ(ierr);
158d36fbae8SSatish Balay         } else {
1598798bf22SSatish Balay           ierr = MatStashValuesCol_Private(&mat->stash,idxm[i],n,idxn,v+i,m);CHKERRQ(ierr);
16039b7565bSBarry Smith         }
161b49de8d1SLois Curfman McInnes       }
162b49de8d1SLois Curfman McInnes     }
1633782ba37SSatish Balay   }
1643a40ed3dSBarry Smith   PetscFunctionReturn(0);
165b49de8d1SLois Curfman McInnes }
166b49de8d1SLois Curfman McInnes 
1674a2ae208SSatish Balay #undef __FUNCT__
1684a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIDense"
16913f74950SBarry Smith PetscErrorCode MatGetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
170b49de8d1SLois Curfman McInnes {
171b49de8d1SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
172dfbe8321SBarry Smith   PetscErrorCode ierr;
173899cda47SBarry Smith   PetscInt       i,j,rstart = mat->rmap.rstart,rend = mat->rmap.rend,row;
174b49de8d1SLois Curfman McInnes 
1753a40ed3dSBarry Smith   PetscFunctionBegin;
176b49de8d1SLois Curfman McInnes   for (i=0; i<m; i++) {
17729bbc08cSBarry Smith     if (idxm[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row");
178899cda47SBarry Smith     if (idxm[i] >= mat->rmap.N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large");
179b49de8d1SLois Curfman McInnes     if (idxm[i] >= rstart && idxm[i] < rend) {
180b49de8d1SLois Curfman McInnes       row = idxm[i] - rstart;
181b49de8d1SLois Curfman McInnes       for (j=0; j<n; j++) {
18229bbc08cSBarry Smith         if (idxn[j] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative column");
183899cda47SBarry Smith         if (idxn[j] >= mat->cmap.N) {
18429bbc08cSBarry Smith           SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Column too large");
185a8c6a408SBarry Smith         }
186b49de8d1SLois Curfman McInnes         ierr = MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j);CHKERRQ(ierr);
187b49de8d1SLois Curfman McInnes       }
188a8c6a408SBarry Smith     } else {
18929bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Only local values currently supported");
1908965ea79SLois Curfman McInnes     }
1918965ea79SLois Curfman McInnes   }
1923a40ed3dSBarry Smith   PetscFunctionReturn(0);
1938965ea79SLois Curfman McInnes }
1948965ea79SLois Curfman McInnes 
1954a2ae208SSatish Balay #undef __FUNCT__
1964a2ae208SSatish Balay #define __FUNCT__ "MatGetArray_MPIDense"
197dfbe8321SBarry Smith PetscErrorCode MatGetArray_MPIDense(Mat A,PetscScalar *array[])
198ff14e315SSatish Balay {
199ff14e315SSatish Balay   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
200dfbe8321SBarry Smith   PetscErrorCode ierr;
201ff14e315SSatish Balay 
2023a40ed3dSBarry Smith   PetscFunctionBegin;
203ff14e315SSatish Balay   ierr = MatGetArray(a->A,array);CHKERRQ(ierr);
2043a40ed3dSBarry Smith   PetscFunctionReturn(0);
205ff14e315SSatish Balay }
206ff14e315SSatish Balay 
2074a2ae208SSatish Balay #undef __FUNCT__
2084a2ae208SSatish Balay #define __FUNCT__ "MatGetSubMatrix_MPIDense"
20913f74950SBarry Smith static PetscErrorCode MatGetSubMatrix_MPIDense(Mat A,IS isrow,IS iscol,PetscInt cs,MatReuse scall,Mat *B)
210ca3fa75bSLois Curfman McInnes {
211ca3fa75bSLois Curfman McInnes   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data,*newmatd;
212ca3fa75bSLois Curfman McInnes   Mat_SeqDense   *lmat = (Mat_SeqDense*)mat->A->data;
2136849ba73SBarry Smith   PetscErrorCode ierr;
21413f74950SBarry Smith   PetscInt       i,j,*irow,*icol,rstart,rend,nrows,ncols,nlrows,nlcols;
21587828ca2SBarry Smith   PetscScalar    *av,*bv,*v = lmat->v;
216ca3fa75bSLois Curfman McInnes   Mat            newmat;
217ca3fa75bSLois Curfman McInnes 
218ca3fa75bSLois Curfman McInnes   PetscFunctionBegin;
219ca3fa75bSLois Curfman McInnes   ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr);
220ca3fa75bSLois Curfman McInnes   ierr = ISGetIndices(iscol,&icol);CHKERRQ(ierr);
221b9b97703SBarry Smith   ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr);
222b9b97703SBarry Smith   ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr);
223ca3fa75bSLois Curfman McInnes 
224ca3fa75bSLois Curfman McInnes   /* No parallel redistribution currently supported! Should really check each index set
2257eba5e9cSLois Curfman McInnes      to comfirm that it is OK.  ... Currently supports only submatrix same partitioning as
2267eba5e9cSLois Curfman McInnes      original matrix! */
227ca3fa75bSLois Curfman McInnes 
228ca3fa75bSLois Curfman McInnes   ierr = MatGetLocalSize(A,&nlrows,&nlcols);CHKERRQ(ierr);
2297eba5e9cSLois Curfman McInnes   ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr);
230ca3fa75bSLois Curfman McInnes 
231ca3fa75bSLois Curfman McInnes   /* Check submatrix call */
232ca3fa75bSLois Curfman McInnes   if (scall == MAT_REUSE_MATRIX) {
23329bbc08cSBarry Smith     /* SETERRQ(PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */
2347eba5e9cSLois Curfman McInnes     /* Really need to test rows and column sizes! */
235ca3fa75bSLois Curfman McInnes     newmat = *B;
236ca3fa75bSLois Curfman McInnes   } else {
237ca3fa75bSLois Curfman McInnes     /* Create and fill new matrix */
238f69a0ea3SMatthew Knepley     ierr = MatCreate(A->comm,&newmat);CHKERRQ(ierr);
239f69a0ea3SMatthew Knepley     ierr = MatSetSizes(newmat,nrows,cs,PETSC_DECIDE,ncols);CHKERRQ(ierr);
240878740d9SKris Buschelman     ierr = MatSetType(newmat,A->type_name);CHKERRQ(ierr);
241878740d9SKris Buschelman     ierr = MatMPIDenseSetPreallocation(newmat,PETSC_NULL);CHKERRQ(ierr);
242ca3fa75bSLois Curfman McInnes   }
243ca3fa75bSLois Curfman McInnes 
244ca3fa75bSLois Curfman McInnes   /* Now extract the data pointers and do the copy, column at a time */
245ca3fa75bSLois Curfman McInnes   newmatd = (Mat_MPIDense*)newmat->data;
246ca3fa75bSLois Curfman McInnes   bv      = ((Mat_SeqDense *)newmatd->A->data)->v;
247ca3fa75bSLois Curfman McInnes 
248ca3fa75bSLois Curfman McInnes   for (i=0; i<ncols; i++) {
249ca3fa75bSLois Curfman McInnes     av = v + nlrows*icol[i];
250ca3fa75bSLois Curfman McInnes     for (j=0; j<nrows; j++) {
2517eba5e9cSLois Curfman McInnes       *bv++ = av[irow[j] - rstart];
252ca3fa75bSLois Curfman McInnes     }
253ca3fa75bSLois Curfman McInnes   }
254ca3fa75bSLois Curfman McInnes 
255ca3fa75bSLois Curfman McInnes   /* Assemble the matrices so that the correct flags are set */
256ca3fa75bSLois Curfman McInnes   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
257ca3fa75bSLois Curfman McInnes   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
258ca3fa75bSLois Curfman McInnes 
259ca3fa75bSLois Curfman McInnes   /* Free work space */
260ca3fa75bSLois Curfman McInnes   ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr);
261ca3fa75bSLois Curfman McInnes   ierr = ISRestoreIndices(iscol,&icol);CHKERRQ(ierr);
262ca3fa75bSLois Curfman McInnes   *B = newmat;
263ca3fa75bSLois Curfman McInnes   PetscFunctionReturn(0);
264ca3fa75bSLois Curfman McInnes }
265ca3fa75bSLois Curfman McInnes 
2664a2ae208SSatish Balay #undef __FUNCT__
2674a2ae208SSatish Balay #define __FUNCT__ "MatRestoreArray_MPIDense"
268dfbe8321SBarry Smith PetscErrorCode MatRestoreArray_MPIDense(Mat A,PetscScalar *array[])
269ff14e315SSatish Balay {
2703a40ed3dSBarry Smith   PetscFunctionBegin;
2713a40ed3dSBarry Smith   PetscFunctionReturn(0);
272ff14e315SSatish Balay }
273ff14e315SSatish Balay 
2744a2ae208SSatish Balay #undef __FUNCT__
2754a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIDense"
276dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode)
2778965ea79SLois Curfman McInnes {
27839ddd567SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
2798965ea79SLois Curfman McInnes   MPI_Comm       comm = mat->comm;
280dfbe8321SBarry Smith   PetscErrorCode ierr;
28113f74950SBarry Smith   PetscInt       nstash,reallocs;
2828965ea79SLois Curfman McInnes   InsertMode     addv;
2838965ea79SLois Curfman McInnes 
2843a40ed3dSBarry Smith   PetscFunctionBegin;
2858965ea79SLois Curfman McInnes   /* make sure all processors are either in INSERTMODE or ADDMODE */
286ca161407SBarry Smith   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,comm);CHKERRQ(ierr);
2877056b6fcSBarry Smith   if (addv == (ADD_VALUES|INSERT_VALUES)) {
28829bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Cannot mix adds/inserts on different procs");
2898965ea79SLois Curfman McInnes   }
290e0fa3b82SLois Curfman McInnes   mat->insertmode = addv; /* in case this processor had no cache */
2918965ea79SLois Curfman McInnes 
292899cda47SBarry Smith   ierr = MatStashScatterBegin_Private(&mat->stash,mat->rmap.range);CHKERRQ(ierr);
2938798bf22SSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
294ae15b995SBarry Smith   ierr = PetscInfo2(mdn->A,"Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
2953a40ed3dSBarry Smith   PetscFunctionReturn(0);
2968965ea79SLois Curfman McInnes }
2978965ea79SLois Curfman McInnes 
2984a2ae208SSatish Balay #undef __FUNCT__
2994a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIDense"
300dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode)
3018965ea79SLois Curfman McInnes {
30239ddd567SLois Curfman McInnes   Mat_MPIDense    *mdn=(Mat_MPIDense*)mat->data;
3036849ba73SBarry Smith   PetscErrorCode  ierr;
30413f74950SBarry Smith   PetscInt        i,*row,*col,flg,j,rstart,ncols;
30513f74950SBarry Smith   PetscMPIInt     n;
30687828ca2SBarry Smith   PetscScalar     *val;
307e0fa3b82SLois Curfman McInnes   InsertMode      addv=mat->insertmode;
3088965ea79SLois Curfman McInnes 
3093a40ed3dSBarry Smith   PetscFunctionBegin;
3108965ea79SLois Curfman McInnes   /*  wait on receives */
3117ef1d9bdSSatish Balay   while (1) {
3128798bf22SSatish Balay     ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
3137ef1d9bdSSatish Balay     if (!flg) break;
3148965ea79SLois Curfman McInnes 
3157ef1d9bdSSatish Balay     for (i=0; i<n;) {
3167ef1d9bdSSatish Balay       /* Now identify the consecutive vals belonging to the same row */
3177ef1d9bdSSatish Balay       for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
3187ef1d9bdSSatish Balay       if (j < n) ncols = j-i;
3197ef1d9bdSSatish Balay       else       ncols = n-i;
3207ef1d9bdSSatish Balay       /* Now assemble all these values with a single function call */
3217ef1d9bdSSatish Balay       ierr = MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
3227ef1d9bdSSatish Balay       i = j;
3238965ea79SLois Curfman McInnes     }
3247ef1d9bdSSatish Balay   }
3258798bf22SSatish Balay   ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
3268965ea79SLois Curfman McInnes 
32739ddd567SLois Curfman McInnes   ierr = MatAssemblyBegin(mdn->A,mode);CHKERRQ(ierr);
32839ddd567SLois Curfman McInnes   ierr = MatAssemblyEnd(mdn->A,mode);CHKERRQ(ierr);
3298965ea79SLois Curfman McInnes 
3306d4a8577SBarry Smith   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
33139ddd567SLois Curfman McInnes     ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr);
3328965ea79SLois Curfman McInnes   }
3333a40ed3dSBarry Smith   PetscFunctionReturn(0);
3348965ea79SLois Curfman McInnes }
3358965ea79SLois Curfman McInnes 
3364a2ae208SSatish Balay #undef __FUNCT__
3374a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIDense"
338dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIDense(Mat A)
3398965ea79SLois Curfman McInnes {
340dfbe8321SBarry Smith   PetscErrorCode ierr;
34139ddd567SLois Curfman McInnes   Mat_MPIDense   *l = (Mat_MPIDense*)A->data;
3423a40ed3dSBarry Smith 
3433a40ed3dSBarry Smith   PetscFunctionBegin;
3443a40ed3dSBarry Smith   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
3453a40ed3dSBarry Smith   PetscFunctionReturn(0);
3468965ea79SLois Curfman McInnes }
3478965ea79SLois Curfman McInnes 
3488965ea79SLois Curfman McInnes /* the code does not do the diagonal entries correctly unless the
3498965ea79SLois Curfman McInnes    matrix is square and the column and row owerships are identical.
3508965ea79SLois Curfman McInnes    This is a BUG. The only way to fix it seems to be to access
3513501a2bdSLois Curfman McInnes    mdn->A and mdn->B directly and not through the MatZeroRows()
3528965ea79SLois Curfman McInnes    routine.
3538965ea79SLois Curfman McInnes */
3544a2ae208SSatish Balay #undef __FUNCT__
3554a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIDense"
356f4df32b1SMatthew Knepley PetscErrorCode MatZeroRows_MPIDense(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag)
3578965ea79SLois Curfman McInnes {
35839ddd567SLois Curfman McInnes   Mat_MPIDense   *l = (Mat_MPIDense*)A->data;
3596849ba73SBarry Smith   PetscErrorCode ierr;
360899cda47SBarry Smith   PetscInt       i,*owners = A->rmap.range;
36113f74950SBarry Smith   PetscInt       *nprocs,j,idx,nsends;
36213f74950SBarry Smith   PetscInt       nmax,*svalues,*starts,*owner,nrecvs;
36313f74950SBarry Smith   PetscInt       *rvalues,tag = A->tag,count,base,slen,*source;
36413f74950SBarry Smith   PetscInt       *lens,*lrows,*values;
36513f74950SBarry Smith   PetscMPIInt    n,imdex,rank = l->rank,size = l->size;
3668965ea79SLois Curfman McInnes   MPI_Comm       comm = A->comm;
3678965ea79SLois Curfman McInnes   MPI_Request    *send_waits,*recv_waits;
3688965ea79SLois Curfman McInnes   MPI_Status     recv_status,*send_status;
36935d8aa7fSBarry Smith   PetscTruth     found;
3708965ea79SLois Curfman McInnes 
3713a40ed3dSBarry Smith   PetscFunctionBegin;
3728965ea79SLois Curfman McInnes   /*  first count number of contributors to each processor */
37313f74950SBarry Smith   ierr  = PetscMalloc(2*size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr);
37413f74950SBarry Smith   ierr  = PetscMemzero(nprocs,2*size*sizeof(PetscInt));CHKERRQ(ierr);
37513f74950SBarry Smith   ierr  = PetscMalloc((N+1)*sizeof(PetscInt),&owner);CHKERRQ(ierr); /* see note*/
3768965ea79SLois Curfman McInnes   for (i=0; i<N; i++) {
3778965ea79SLois Curfman McInnes     idx = rows[i];
37835d8aa7fSBarry Smith     found = PETSC_FALSE;
3798965ea79SLois Curfman McInnes     for (j=0; j<size; j++) {
3808965ea79SLois Curfman McInnes       if (idx >= owners[j] && idx < owners[j+1]) {
381c1dc657dSBarry Smith         nprocs[2*j]++; nprocs[2*j+1] = 1; owner[i] = j; found = PETSC_TRUE; break;
3828965ea79SLois Curfman McInnes       }
3838965ea79SLois Curfman McInnes     }
38429bbc08cSBarry Smith     if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range");
3858965ea79SLois Curfman McInnes   }
386c1dc657dSBarry Smith   nsends = 0;  for (i=0; i<size; i++) { nsends += nprocs[2*i+1];}
3878965ea79SLois Curfman McInnes 
3888965ea79SLois Curfman McInnes   /* inform other processors of number of messages and max length*/
389c1dc657dSBarry Smith   ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr);
3908965ea79SLois Curfman McInnes 
3918965ea79SLois Curfman McInnes   /* post receives:   */
39213f74950SBarry Smith   ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(PetscInt),&rvalues);CHKERRQ(ierr);
393b0a32e0cSBarry Smith   ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr);
3948965ea79SLois Curfman McInnes   for (i=0; i<nrecvs; i++) {
39513f74950SBarry Smith     ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr);
3968965ea79SLois Curfman McInnes   }
3978965ea79SLois Curfman McInnes 
3988965ea79SLois Curfman McInnes   /* do sends:
3998965ea79SLois Curfman McInnes       1) starts[i] gives the starting index in svalues for stuff going to
4008965ea79SLois Curfman McInnes          the ith processor
4018965ea79SLois Curfman McInnes   */
40213f74950SBarry Smith   ierr = PetscMalloc((N+1)*sizeof(PetscInt),&svalues);CHKERRQ(ierr);
403b0a32e0cSBarry Smith   ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr);
40413f74950SBarry Smith   ierr = PetscMalloc((size+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr);
4058965ea79SLois Curfman McInnes   starts[0]  = 0;
406c1dc657dSBarry Smith   for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];}
4078965ea79SLois Curfman McInnes   for (i=0; i<N; i++) {
4088965ea79SLois Curfman McInnes     svalues[starts[owner[i]]++] = rows[i];
4098965ea79SLois Curfman McInnes   }
4108965ea79SLois Curfman McInnes 
4118965ea79SLois Curfman McInnes   starts[0] = 0;
412c1dc657dSBarry Smith   for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];}
4138965ea79SLois Curfman McInnes   count = 0;
4148965ea79SLois Curfman McInnes   for (i=0; i<size; i++) {
415c1dc657dSBarry Smith     if (nprocs[2*i+1]) {
41613f74950SBarry Smith       ierr = MPI_Isend(svalues+starts[i],nprocs[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr);
4178965ea79SLois Curfman McInnes     }
4188965ea79SLois Curfman McInnes   }
419606d414cSSatish Balay   ierr = PetscFree(starts);CHKERRQ(ierr);
4208965ea79SLois Curfman McInnes 
4218965ea79SLois Curfman McInnes   base = owners[rank];
4228965ea79SLois Curfman McInnes 
4238965ea79SLois Curfman McInnes   /*  wait on receives */
42413f74950SBarry Smith   ierr   = PetscMalloc(2*(nrecvs+1)*sizeof(PetscInt),&lens);CHKERRQ(ierr);
4258965ea79SLois Curfman McInnes   source = lens + nrecvs;
4268965ea79SLois Curfman McInnes   count  = nrecvs; slen = 0;
4278965ea79SLois Curfman McInnes   while (count) {
428ca161407SBarry Smith     ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr);
4298965ea79SLois Curfman McInnes     /* unpack receives into our local space */
43013f74950SBarry Smith     ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr);
4318965ea79SLois Curfman McInnes     source[imdex]  = recv_status.MPI_SOURCE;
4328965ea79SLois Curfman McInnes     lens[imdex]    = n;
4338965ea79SLois Curfman McInnes     slen += n;
4348965ea79SLois Curfman McInnes     count--;
4358965ea79SLois Curfman McInnes   }
436606d414cSSatish Balay   ierr = PetscFree(recv_waits);CHKERRQ(ierr);
4378965ea79SLois Curfman McInnes 
4388965ea79SLois Curfman McInnes   /* move the data into the send scatter */
43913f74950SBarry Smith   ierr = PetscMalloc((slen+1)*sizeof(PetscInt),&lrows);CHKERRQ(ierr);
4408965ea79SLois Curfman McInnes   count = 0;
4418965ea79SLois Curfman McInnes   for (i=0; i<nrecvs; i++) {
4428965ea79SLois Curfman McInnes     values = rvalues + i*nmax;
4438965ea79SLois Curfman McInnes     for (j=0; j<lens[i]; j++) {
4448965ea79SLois Curfman McInnes       lrows[count++] = values[j] - base;
4458965ea79SLois Curfman McInnes     }
4468965ea79SLois Curfman McInnes   }
447606d414cSSatish Balay   ierr = PetscFree(rvalues);CHKERRQ(ierr);
448606d414cSSatish Balay   ierr = PetscFree(lens);CHKERRQ(ierr);
449606d414cSSatish Balay   ierr = PetscFree(owner);CHKERRQ(ierr);
450606d414cSSatish Balay   ierr = PetscFree(nprocs);CHKERRQ(ierr);
4518965ea79SLois Curfman McInnes 
4528965ea79SLois Curfman McInnes   /* actually zap the local rows */
453f4df32b1SMatthew Knepley   ierr = MatZeroRows(l->A,slen,lrows,diag);CHKERRQ(ierr);
454606d414cSSatish Balay   ierr = PetscFree(lrows);CHKERRQ(ierr);
4558965ea79SLois Curfman McInnes 
4568965ea79SLois Curfman McInnes   /* wait on sends */
4578965ea79SLois Curfman McInnes   if (nsends) {
458b0a32e0cSBarry Smith     ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr);
459ca161407SBarry Smith     ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr);
460606d414cSSatish Balay     ierr = PetscFree(send_status);CHKERRQ(ierr);
4618965ea79SLois Curfman McInnes   }
462606d414cSSatish Balay   ierr = PetscFree(send_waits);CHKERRQ(ierr);
463606d414cSSatish Balay   ierr = PetscFree(svalues);CHKERRQ(ierr);
4648965ea79SLois Curfman McInnes 
4653a40ed3dSBarry Smith   PetscFunctionReturn(0);
4668965ea79SLois Curfman McInnes }
4678965ea79SLois Curfman McInnes 
4684a2ae208SSatish Balay #undef __FUNCT__
4694a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIDense"
470dfbe8321SBarry Smith PetscErrorCode MatMult_MPIDense(Mat mat,Vec xx,Vec yy)
4718965ea79SLois Curfman McInnes {
47239ddd567SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
473dfbe8321SBarry Smith   PetscErrorCode ierr;
474c456f294SBarry Smith 
4753a40ed3dSBarry Smith   PetscFunctionBegin;
47643a90d84SBarry Smith   ierr = VecScatterBegin(xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD,mdn->Mvctx);CHKERRQ(ierr);
47743a90d84SBarry Smith   ierr = VecScatterEnd(xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD,mdn->Mvctx);CHKERRQ(ierr);
47844cd7ae7SLois Curfman McInnes   ierr = MatMult_SeqDense(mdn->A,mdn->lvec,yy);CHKERRQ(ierr);
4793a40ed3dSBarry Smith   PetscFunctionReturn(0);
4808965ea79SLois Curfman McInnes }
4818965ea79SLois Curfman McInnes 
4824a2ae208SSatish Balay #undef __FUNCT__
4834a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIDense"
484dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz)
4858965ea79SLois Curfman McInnes {
48639ddd567SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
487dfbe8321SBarry Smith   PetscErrorCode ierr;
488c456f294SBarry Smith 
4893a40ed3dSBarry Smith   PetscFunctionBegin;
49043a90d84SBarry Smith   ierr = VecScatterBegin(xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD,mdn->Mvctx);CHKERRQ(ierr);
49143a90d84SBarry Smith   ierr = VecScatterEnd(xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD,mdn->Mvctx);CHKERRQ(ierr);
49244cd7ae7SLois Curfman McInnes   ierr = MatMultAdd_SeqDense(mdn->A,mdn->lvec,yy,zz);CHKERRQ(ierr);
4933a40ed3dSBarry Smith   PetscFunctionReturn(0);
4948965ea79SLois Curfman McInnes }
4958965ea79SLois Curfman McInnes 
4964a2ae208SSatish Balay #undef __FUNCT__
4974a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIDense"
498dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIDense(Mat A,Vec xx,Vec yy)
499096963f5SLois Curfman McInnes {
500096963f5SLois Curfman McInnes   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
501dfbe8321SBarry Smith   PetscErrorCode ierr;
50287828ca2SBarry Smith   PetscScalar    zero = 0.0;
503096963f5SLois Curfman McInnes 
5043a40ed3dSBarry Smith   PetscFunctionBegin;
5052dcb1b2aSMatthew Knepley   ierr = VecSet(yy,zero);CHKERRQ(ierr);
5067c922b88SBarry Smith   ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr);
507537820f0SBarry Smith   ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
508537820f0SBarry Smith   ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
5093a40ed3dSBarry Smith   PetscFunctionReturn(0);
510096963f5SLois Curfman McInnes }
511096963f5SLois Curfman McInnes 
5124a2ae208SSatish Balay #undef __FUNCT__
5134a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIDense"
514dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz)
515096963f5SLois Curfman McInnes {
516096963f5SLois Curfman McInnes   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
517dfbe8321SBarry Smith   PetscErrorCode ierr;
518096963f5SLois Curfman McInnes 
5193a40ed3dSBarry Smith   PetscFunctionBegin;
5203501a2bdSLois Curfman McInnes   ierr = VecCopy(yy,zz);CHKERRQ(ierr);
5217c922b88SBarry Smith   ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr);
522537820f0SBarry Smith   ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
523537820f0SBarry Smith   ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
5243a40ed3dSBarry Smith   PetscFunctionReturn(0);
525096963f5SLois Curfman McInnes }
526096963f5SLois Curfman McInnes 
5274a2ae208SSatish Balay #undef __FUNCT__
5284a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIDense"
529dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIDense(Mat A,Vec v)
5308965ea79SLois Curfman McInnes {
53139ddd567SLois Curfman McInnes   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
532096963f5SLois Curfman McInnes   Mat_SeqDense   *aloc = (Mat_SeqDense*)a->A->data;
533dfbe8321SBarry Smith   PetscErrorCode ierr;
534899cda47SBarry Smith   PetscInt       len,i,n,m = A->rmap.n,radd;
53587828ca2SBarry Smith   PetscScalar    *x,zero = 0.0;
536ed3cc1f0SBarry Smith 
5373a40ed3dSBarry Smith   PetscFunctionBegin;
5382dcb1b2aSMatthew Knepley   ierr = VecSet(v,zero);CHKERRQ(ierr);
5391ebc52fbSHong Zhang   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
540096963f5SLois Curfman McInnes   ierr = VecGetSize(v,&n);CHKERRQ(ierr);
541899cda47SBarry Smith   if (n != A->rmap.N) SETERRQ(PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec");
542899cda47SBarry Smith   len  = PetscMin(a->A->rmap.n,a->A->cmap.n);
543899cda47SBarry Smith   radd = A->rmap.rstart*m;
54444cd7ae7SLois Curfman McInnes   for (i=0; i<len; i++) {
545096963f5SLois Curfman McInnes     x[i] = aloc->v[radd + i*m + i];
546096963f5SLois Curfman McInnes   }
5471ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
5483a40ed3dSBarry Smith   PetscFunctionReturn(0);
5498965ea79SLois Curfman McInnes }
5508965ea79SLois Curfman McInnes 
5514a2ae208SSatish Balay #undef __FUNCT__
5524a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIDense"
553dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIDense(Mat mat)
5548965ea79SLois Curfman McInnes {
5553501a2bdSLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
556dfbe8321SBarry Smith   PetscErrorCode ierr;
557ed3cc1f0SBarry Smith 
5583a40ed3dSBarry Smith   PetscFunctionBegin;
55994d884c6SBarry Smith 
560aa482453SBarry Smith #if defined(PETSC_USE_LOG)
561899cda47SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D, Cols=%D",mat->rmap.N,mat->cmap.N);
5628965ea79SLois Curfman McInnes #endif
5638798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
5643501a2bdSLois Curfman McInnes   ierr = MatDestroy(mdn->A);CHKERRQ(ierr);
56505b42c5fSBarry Smith   if (mdn->lvec)   {ierr = VecDestroy(mdn->lvec);CHKERRQ(ierr);}
56605b42c5fSBarry Smith   if (mdn->Mvctx)  {ierr = VecScatterDestroy(mdn->Mvctx);CHKERRQ(ierr);}
567622d7880SLois Curfman McInnes   if (mdn->factor) {
56805b42c5fSBarry Smith     ierr = PetscFree(mdn->factor->temp);CHKERRQ(ierr);
56905b42c5fSBarry Smith     ierr = PetscFree(mdn->factor->tag);CHKERRQ(ierr);
57005b42c5fSBarry Smith     ierr = PetscFree(mdn->factor->pivots);CHKERRQ(ierr);
571606d414cSSatish Balay     ierr = PetscFree(mdn->factor);CHKERRQ(ierr);
572622d7880SLois Curfman McInnes   }
573606d414cSSatish Balay   ierr = PetscFree(mdn);CHKERRQ(ierr);
574901853e0SKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr);
575901853e0SKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMPIDenseSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
576*4ae313f4SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMult_mpiaij_mpidense_C","",PETSC_NULL);CHKERRQ(ierr);
577*4ae313f4SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C","",PETSC_NULL);CHKERRQ(ierr);
578*4ae313f4SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C","",PETSC_NULL);CHKERRQ(ierr);
5793a40ed3dSBarry Smith   PetscFunctionReturn(0);
5808965ea79SLois Curfman McInnes }
58139ddd567SLois Curfman McInnes 
5824a2ae208SSatish Balay #undef __FUNCT__
5834a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense_Binary"
5846849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_Binary(Mat mat,PetscViewer viewer)
5858965ea79SLois Curfman McInnes {
58639ddd567SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
587dfbe8321SBarry Smith   PetscErrorCode ierr;
5887056b6fcSBarry Smith 
5893a40ed3dSBarry Smith   PetscFunctionBegin;
59039ddd567SLois Curfman McInnes   if (mdn->size == 1) {
59139ddd567SLois Curfman McInnes     ierr = MatView(mdn->A,viewer);CHKERRQ(ierr);
5928965ea79SLois Curfman McInnes   }
59329bbc08cSBarry Smith   else SETERRQ(PETSC_ERR_SUP,"Only uniprocessor output supported");
5943a40ed3dSBarry Smith   PetscFunctionReturn(0);
5958965ea79SLois Curfman McInnes }
5968965ea79SLois Curfman McInnes 
5974a2ae208SSatish Balay #undef __FUNCT__
5984a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense_ASCIIorDraworSocket"
5996849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
6008965ea79SLois Curfman McInnes {
60139ddd567SLois Curfman McInnes   Mat_MPIDense      *mdn = (Mat_MPIDense*)mat->data;
602dfbe8321SBarry Smith   PetscErrorCode    ierr;
60332dcc486SBarry Smith   PetscMPIInt       size = mdn->size,rank = mdn->rank;
604b0a32e0cSBarry Smith   PetscViewerType   vtype;
60532077d6dSBarry Smith   PetscTruth        iascii,isdraw;
606b0a32e0cSBarry Smith   PetscViewer       sviewer;
607f3ef73ceSBarry Smith   PetscViewerFormat format;
6088965ea79SLois Curfman McInnes 
6093a40ed3dSBarry Smith   PetscFunctionBegin;
61032077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
611fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
61232077d6dSBarry Smith   if (iascii) {
613b0a32e0cSBarry Smith     ierr = PetscViewerGetType(viewer,&vtype);CHKERRQ(ierr);
614b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
615456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
6164e220ebcSLois Curfman McInnes       MatInfo info;
617888f2ed8SSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
618899cda47SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"  [%d] local rows %D nz %D nz alloced %D mem %D \n",rank,mat->rmap.n,
61977431f27SBarry Smith                    (PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory);CHKERRQ(ierr);
620b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
6213501a2bdSLois Curfman McInnes       ierr = VecScatterView(mdn->Mvctx,viewer);CHKERRQ(ierr);
6223a40ed3dSBarry Smith       PetscFunctionReturn(0);
623fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
6243a40ed3dSBarry Smith       PetscFunctionReturn(0);
6258965ea79SLois Curfman McInnes     }
626f1af5d2fSBarry Smith   } else if (isdraw) {
627b0a32e0cSBarry Smith     PetscDraw  draw;
628f1af5d2fSBarry Smith     PetscTruth isnull;
629f1af5d2fSBarry Smith 
630b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
631b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr);
632f1af5d2fSBarry Smith     if (isnull) PetscFunctionReturn(0);
633f1af5d2fSBarry Smith   }
63477ed5343SBarry Smith 
6358965ea79SLois Curfman McInnes   if (size == 1) {
63639ddd567SLois Curfman McInnes     ierr = MatView(mdn->A,viewer);CHKERRQ(ierr);
6373a40ed3dSBarry Smith   } else {
6388965ea79SLois Curfman McInnes     /* assemble the entire matrix onto first processor. */
6398965ea79SLois Curfman McInnes     Mat         A;
640899cda47SBarry Smith     PetscInt    M = mat->rmap.N,N = mat->cmap.N,m,row,i,nz;
641ba8c8a56SBarry Smith     PetscInt    *cols;
642ba8c8a56SBarry Smith     PetscScalar *vals;
6438965ea79SLois Curfman McInnes 
644f69a0ea3SMatthew Knepley     ierr = MatCreate(mat->comm,&A);CHKERRQ(ierr);
6458965ea79SLois Curfman McInnes     if (!rank) {
646f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
6473a40ed3dSBarry Smith     } else {
648f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
6498965ea79SLois Curfman McInnes     }
650be5d1d56SKris Buschelman     /* Since this is a temporary matrix, MATMPIDENSE instead of A->type_name here is probably acceptable. */
651878740d9SKris Buschelman     ierr = MatSetType(A,MATMPIDENSE);CHKERRQ(ierr);
652878740d9SKris Buschelman     ierr = MatMPIDenseSetPreallocation(A,PETSC_NULL);
65352e6d16bSBarry Smith     ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr);
6548965ea79SLois Curfman McInnes 
65539ddd567SLois Curfman McInnes     /* Copy the matrix ... This isn't the most efficient means,
65639ddd567SLois Curfman McInnes        but it's quick for now */
65751022da4SBarry Smith     A->insertmode = INSERT_VALUES;
658899cda47SBarry Smith     row = mat->rmap.rstart; m = mdn->A->rmap.n;
6598965ea79SLois Curfman McInnes     for (i=0; i<m; i++) {
660ba8c8a56SBarry Smith       ierr = MatGetRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr);
661ba8c8a56SBarry Smith       ierr = MatSetValues_MPIDense(A,1,&row,nz,cols,vals,INSERT_VALUES);CHKERRQ(ierr);
662ba8c8a56SBarry Smith       ierr = MatRestoreRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr);
66339ddd567SLois Curfman McInnes       row++;
6648965ea79SLois Curfman McInnes     }
6658965ea79SLois Curfman McInnes 
6666d4a8577SBarry Smith     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
6676d4a8577SBarry Smith     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
668b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
669b9b97703SBarry Smith     if (!rank) {
6706831982aSBarry Smith       ierr = MatView(((Mat_MPIDense*)(A->data))->A,sviewer);CHKERRQ(ierr);
6718965ea79SLois Curfman McInnes     }
672b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
673b0a32e0cSBarry Smith     ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
6748965ea79SLois Curfman McInnes     ierr = MatDestroy(A);CHKERRQ(ierr);
6758965ea79SLois Curfman McInnes   }
6763a40ed3dSBarry Smith   PetscFunctionReturn(0);
6778965ea79SLois Curfman McInnes }
6788965ea79SLois Curfman McInnes 
6794a2ae208SSatish Balay #undef __FUNCT__
6804a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense"
681dfbe8321SBarry Smith PetscErrorCode MatView_MPIDense(Mat mat,PetscViewer viewer)
6828965ea79SLois Curfman McInnes {
683dfbe8321SBarry Smith   PetscErrorCode ierr;
68432077d6dSBarry Smith   PetscTruth     iascii,isbinary,isdraw,issocket;
6858965ea79SLois Curfman McInnes 
686433994e6SBarry Smith   PetscFunctionBegin;
6870f5bd95cSBarry Smith 
68832077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
689fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
690b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr);
691fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
6920f5bd95cSBarry Smith 
69332077d6dSBarry Smith   if (iascii || issocket || isdraw) {
694f1af5d2fSBarry Smith     ierr = MatView_MPIDense_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
6950f5bd95cSBarry Smith   } else if (isbinary) {
6963a40ed3dSBarry Smith     ierr = MatView_MPIDense_Binary(mat,viewer);CHKERRQ(ierr);
6975cd90555SBarry Smith   } else {
698958c9bccSBarry Smith     SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPI dense matrix",((PetscObject)viewer)->type_name);
6998965ea79SLois Curfman McInnes   }
7003a40ed3dSBarry Smith   PetscFunctionReturn(0);
7018965ea79SLois Curfman McInnes }
7028965ea79SLois Curfman McInnes 
7034a2ae208SSatish Balay #undef __FUNCT__
7044a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIDense"
705dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info)
7068965ea79SLois Curfman McInnes {
7073501a2bdSLois Curfman McInnes   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
7083501a2bdSLois Curfman McInnes   Mat            mdn = mat->A;
709dfbe8321SBarry Smith   PetscErrorCode ierr;
710329f5518SBarry Smith   PetscReal      isend[5],irecv[5];
7118965ea79SLois Curfman McInnes 
7123a40ed3dSBarry Smith   PetscFunctionBegin;
713899cda47SBarry Smith   info->rows_global    = (double)A->rmap.N;
714899cda47SBarry Smith   info->columns_global = (double)A->cmap.N;
715899cda47SBarry Smith   info->rows_local     = (double)A->rmap.n;
716899cda47SBarry Smith   info->columns_local  = (double)A->cmap.N;
7174e220ebcSLois Curfman McInnes   info->block_size     = 1.0;
7184e220ebcSLois Curfman McInnes   ierr = MatGetInfo(mdn,MAT_LOCAL,info);CHKERRQ(ierr);
7194e220ebcSLois Curfman McInnes   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
7204e220ebcSLois Curfman McInnes   isend[3] = info->memory;  isend[4] = info->mallocs;
7218965ea79SLois Curfman McInnes   if (flag == MAT_LOCAL) {
7224e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
7234e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
7244e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
7254e220ebcSLois Curfman McInnes     info->memory       = isend[3];
7264e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
7278965ea79SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_MAX) {
728d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,A->comm);CHKERRQ(ierr);
7294e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
7304e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
7314e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
7324e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
7334e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
7348965ea79SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_SUM) {
735d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,A->comm);CHKERRQ(ierr);
7364e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
7374e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
7384e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
7394e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
7404e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
7418965ea79SLois Curfman McInnes   }
7424e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
7434e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
7444e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
7453a40ed3dSBarry Smith   PetscFunctionReturn(0);
7468965ea79SLois Curfman McInnes }
7478965ea79SLois Curfman McInnes 
7484a2ae208SSatish Balay #undef __FUNCT__
7494a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIDense"
750dfbe8321SBarry Smith PetscErrorCode MatSetOption_MPIDense(Mat A,MatOption op)
7518965ea79SLois Curfman McInnes {
75239ddd567SLois Curfman McInnes   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
753dfbe8321SBarry Smith   PetscErrorCode ierr;
7548965ea79SLois Curfman McInnes 
7553a40ed3dSBarry Smith   PetscFunctionBegin;
75612c028f9SKris Buschelman   switch (op) {
75712c028f9SKris Buschelman   case MAT_NO_NEW_NONZERO_LOCATIONS:
75812c028f9SKris Buschelman   case MAT_YES_NEW_NONZERO_LOCATIONS:
75912c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
76012c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
76112c028f9SKris Buschelman   case MAT_COLUMNS_SORTED:
76212c028f9SKris Buschelman   case MAT_COLUMNS_UNSORTED:
763273d9f13SBarry Smith     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
76412c028f9SKris Buschelman     break;
76512c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
766273d9f13SBarry Smith     a->roworiented = PETSC_TRUE;
767273d9f13SBarry Smith     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
76812c028f9SKris Buschelman     break;
76912c028f9SKris Buschelman   case MAT_ROWS_SORTED:
77012c028f9SKris Buschelman   case MAT_ROWS_UNSORTED:
77112c028f9SKris Buschelman   case MAT_YES_NEW_DIAGONALS:
77212c028f9SKris Buschelman   case MAT_USE_HASH_TABLE:
773ad86a440SBarry Smith     ierr = PetscInfo1(A,"Option %d ignored\n",op);CHKERRQ(ierr);
77412c028f9SKris Buschelman     break;
77512c028f9SKris Buschelman   case MAT_COLUMN_ORIENTED:
776273d9f13SBarry Smith     a->roworiented = PETSC_FALSE;
777273d9f13SBarry Smith     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
77812c028f9SKris Buschelman     break;
77912c028f9SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
780273d9f13SBarry Smith     a->donotstash = PETSC_TRUE;
78112c028f9SKris Buschelman     break;
78212c028f9SKris Buschelman   case MAT_NO_NEW_DIAGONALS:
78329bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS");
78477e54ba9SKris Buschelman   case MAT_SYMMETRIC:
78577e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
7869a4540c5SBarry Smith   case MAT_NOT_SYMMETRIC:
7879a4540c5SBarry Smith   case MAT_NOT_STRUCTURALLY_SYMMETRIC:
7889a4540c5SBarry Smith   case MAT_HERMITIAN:
7899a4540c5SBarry Smith   case MAT_NOT_HERMITIAN:
7909a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
7919a4540c5SBarry Smith   case MAT_NOT_SYMMETRY_ETERNAL:
79277e54ba9SKris Buschelman     break;
79312c028f9SKris Buschelman   default:
794ad86a440SBarry Smith     SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op);
7953a40ed3dSBarry Smith   }
7963a40ed3dSBarry Smith   PetscFunctionReturn(0);
7978965ea79SLois Curfman McInnes }
7988965ea79SLois Curfman McInnes 
7998965ea79SLois Curfman McInnes 
8004a2ae208SSatish Balay #undef __FUNCT__
8014a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIDense"
802dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIDense(Mat A,Vec ll,Vec rr)
8035b2fa520SLois Curfman McInnes {
8045b2fa520SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)A->data;
8055b2fa520SLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)mdn->A->data;
80687828ca2SBarry Smith   PetscScalar    *l,*r,x,*v;
807dfbe8321SBarry Smith   PetscErrorCode ierr;
808899cda47SBarry Smith   PetscInt       i,j,s2a,s3a,s2,s3,m=mdn->A->rmap.n,n=mdn->A->cmap.n;
8095b2fa520SLois Curfman McInnes 
8105b2fa520SLois Curfman McInnes   PetscFunctionBegin;
81172d926a5SLois Curfman McInnes   ierr = MatGetLocalSize(A,&s2,&s3);CHKERRQ(ierr);
8125b2fa520SLois Curfman McInnes   if (ll) {
81372d926a5SLois Curfman McInnes     ierr = VecGetLocalSize(ll,&s2a);CHKERRQ(ierr);
814175be7b4SMatthew Knepley     if (s2a != s2) SETERRQ2(PETSC_ERR_ARG_SIZ,"Left scaling vector non-conforming local size, %d != %d.", s2a, s2);
8151ebc52fbSHong Zhang     ierr = VecGetArray(ll,&l);CHKERRQ(ierr);
8165b2fa520SLois Curfman McInnes     for (i=0; i<m; i++) {
8175b2fa520SLois Curfman McInnes       x = l[i];
8185b2fa520SLois Curfman McInnes       v = mat->v + i;
8195b2fa520SLois Curfman McInnes       for (j=0; j<n; j++) { (*v) *= x; v+= m;}
8205b2fa520SLois Curfman McInnes     }
8211ebc52fbSHong Zhang     ierr = VecRestoreArray(ll,&l);CHKERRQ(ierr);
822efee365bSSatish Balay     ierr = PetscLogFlops(n*m);CHKERRQ(ierr);
8235b2fa520SLois Curfman McInnes   }
8245b2fa520SLois Curfman McInnes   if (rr) {
825175be7b4SMatthew Knepley     ierr = VecGetLocalSize(rr,&s3a);CHKERRQ(ierr);
826175be7b4SMatthew Knepley     if (s3a != s3) SETERRQ2(PETSC_ERR_ARG_SIZ,"Right scaling vec non-conforming local size, %d != %d.", s3a, s3);
8275b2fa520SLois Curfman McInnes     ierr = VecScatterBegin(rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD,mdn->Mvctx);CHKERRQ(ierr);
8285b2fa520SLois Curfman McInnes     ierr = VecScatterEnd(rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD,mdn->Mvctx);CHKERRQ(ierr);
8291ebc52fbSHong Zhang     ierr = VecGetArray(mdn->lvec,&r);CHKERRQ(ierr);
8305b2fa520SLois Curfman McInnes     for (i=0; i<n; i++) {
8315b2fa520SLois Curfman McInnes       x = r[i];
8325b2fa520SLois Curfman McInnes       v = mat->v + i*m;
8335b2fa520SLois Curfman McInnes       for (j=0; j<m; j++) { (*v++) *= x;}
8345b2fa520SLois Curfman McInnes     }
8351ebc52fbSHong Zhang     ierr = VecRestoreArray(mdn->lvec,&r);CHKERRQ(ierr);
836efee365bSSatish Balay     ierr = PetscLogFlops(n*m);CHKERRQ(ierr);
8375b2fa520SLois Curfman McInnes   }
8385b2fa520SLois Curfman McInnes   PetscFunctionReturn(0);
8395b2fa520SLois Curfman McInnes }
8405b2fa520SLois Curfman McInnes 
8414a2ae208SSatish Balay #undef __FUNCT__
8424a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIDense"
843dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIDense(Mat A,NormType type,PetscReal *nrm)
844096963f5SLois Curfman McInnes {
8453501a2bdSLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)A->data;
8463501a2bdSLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)mdn->A->data;
847dfbe8321SBarry Smith   PetscErrorCode ierr;
84813f74950SBarry Smith   PetscInt       i,j;
849329f5518SBarry Smith   PetscReal      sum = 0.0;
85087828ca2SBarry Smith   PetscScalar    *v = mat->v;
8513501a2bdSLois Curfman McInnes 
8523a40ed3dSBarry Smith   PetscFunctionBegin;
8533501a2bdSLois Curfman McInnes   if (mdn->size == 1) {
854064f8208SBarry Smith     ierr =  MatNorm(mdn->A,type,nrm);CHKERRQ(ierr);
8553501a2bdSLois Curfman McInnes   } else {
8563501a2bdSLois Curfman McInnes     if (type == NORM_FROBENIUS) {
857899cda47SBarry Smith       for (i=0; i<mdn->A->cmap.n*mdn->A->rmap.n; i++) {
858aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
859329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
8603501a2bdSLois Curfman McInnes #else
8613501a2bdSLois Curfman McInnes         sum += (*v)*(*v); v++;
8623501a2bdSLois Curfman McInnes #endif
8633501a2bdSLois Curfman McInnes       }
864064f8208SBarry Smith       ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_SUM,A->comm);CHKERRQ(ierr);
865064f8208SBarry Smith       *nrm = sqrt(*nrm);
866899cda47SBarry Smith       ierr = PetscLogFlops(2*mdn->A->cmap.n*mdn->A->rmap.n);CHKERRQ(ierr);
8673a40ed3dSBarry Smith     } else if (type == NORM_1) {
868329f5518SBarry Smith       PetscReal *tmp,*tmp2;
869899cda47SBarry Smith       ierr = PetscMalloc(2*A->cmap.N*sizeof(PetscReal),&tmp);CHKERRQ(ierr);
870899cda47SBarry Smith       tmp2 = tmp + A->cmap.N;
871899cda47SBarry Smith       ierr = PetscMemzero(tmp,2*A->cmap.N*sizeof(PetscReal));CHKERRQ(ierr);
872064f8208SBarry Smith       *nrm = 0.0;
8733501a2bdSLois Curfman McInnes       v = mat->v;
874899cda47SBarry Smith       for (j=0; j<mdn->A->cmap.n; j++) {
875899cda47SBarry Smith         for (i=0; i<mdn->A->rmap.n; i++) {
87667e560aaSBarry Smith           tmp[j] += PetscAbsScalar(*v);  v++;
8773501a2bdSLois Curfman McInnes         }
8783501a2bdSLois Curfman McInnes       }
879899cda47SBarry Smith       ierr = MPI_Allreduce(tmp,tmp2,A->cmap.N,MPIU_REAL,MPI_SUM,A->comm);CHKERRQ(ierr);
880899cda47SBarry Smith       for (j=0; j<A->cmap.N; j++) {
881064f8208SBarry Smith         if (tmp2[j] > *nrm) *nrm = tmp2[j];
8823501a2bdSLois Curfman McInnes       }
883606d414cSSatish Balay       ierr = PetscFree(tmp);CHKERRQ(ierr);
884899cda47SBarry Smith       ierr = PetscLogFlops(A->cmap.n*A->rmap.n);CHKERRQ(ierr);
8853a40ed3dSBarry Smith     } else if (type == NORM_INFINITY) { /* max row norm */
886329f5518SBarry Smith       PetscReal ntemp;
8873501a2bdSLois Curfman McInnes       ierr = MatNorm(mdn->A,type,&ntemp);CHKERRQ(ierr);
888064f8208SBarry Smith       ierr = MPI_Allreduce(&ntemp,nrm,1,MPIU_REAL,MPI_MAX,A->comm);CHKERRQ(ierr);
8893a40ed3dSBarry Smith     } else {
89029bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"No support for two norm");
8913501a2bdSLois Curfman McInnes     }
8923501a2bdSLois Curfman McInnes   }
8933a40ed3dSBarry Smith   PetscFunctionReturn(0);
8943501a2bdSLois Curfman McInnes }
8953501a2bdSLois Curfman McInnes 
8964a2ae208SSatish Balay #undef __FUNCT__
8974a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPIDense"
898dfbe8321SBarry Smith PetscErrorCode MatTranspose_MPIDense(Mat A,Mat *matout)
8993501a2bdSLois Curfman McInnes {
9003501a2bdSLois Curfman McInnes   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
9013501a2bdSLois Curfman McInnes   Mat_SeqDense   *Aloc = (Mat_SeqDense*)a->A->data;
9023501a2bdSLois Curfman McInnes   Mat            B;
903899cda47SBarry Smith   PetscInt       M = A->rmap.N,N = A->cmap.N,m,n,*rwork,rstart = A->rmap.rstart;
9046849ba73SBarry Smith   PetscErrorCode ierr;
90513f74950SBarry Smith   PetscInt       j,i;
90687828ca2SBarry Smith   PetscScalar    *v;
9073501a2bdSLois Curfman McInnes 
9083a40ed3dSBarry Smith   PetscFunctionBegin;
9097c922b88SBarry Smith   if (!matout && M != N) {
91029bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"Supports square matrix only in-place");
9117056b6fcSBarry Smith   }
912f69a0ea3SMatthew Knepley   ierr = MatCreate(A->comm,&B);CHKERRQ(ierr);
913f69a0ea3SMatthew Knepley   ierr = MatSetSizes(B,PETSC_DECIDE,PETSC_DECIDE,N,M);CHKERRQ(ierr);
914878740d9SKris Buschelman   ierr = MatSetType(B,A->type_name);CHKERRQ(ierr);
915878740d9SKris Buschelman   ierr = MatMPIDenseSetPreallocation(B,PETSC_NULL);CHKERRQ(ierr);
9163501a2bdSLois Curfman McInnes 
917899cda47SBarry Smith   m = a->A->rmap.n; n = a->A->cmap.n; v = Aloc->v;
91813f74950SBarry Smith   ierr = PetscMalloc(n*sizeof(PetscInt),&rwork);CHKERRQ(ierr);
9193501a2bdSLois Curfman McInnes   for (j=0; j<n; j++) {
9203501a2bdSLois Curfman McInnes     for (i=0; i<m; i++) rwork[i] = rstart + i;
9213501a2bdSLois Curfman McInnes     ierr = MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES);CHKERRQ(ierr);
9223501a2bdSLois Curfman McInnes     v   += m;
9233501a2bdSLois Curfman McInnes   }
924606d414cSSatish Balay   ierr = PetscFree(rwork);CHKERRQ(ierr);
9256d4a8577SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
9266d4a8577SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
9277c922b88SBarry Smith   if (matout) {
9283501a2bdSLois Curfman McInnes     *matout = B;
9293501a2bdSLois Curfman McInnes   } else {
930273d9f13SBarry Smith     ierr = MatHeaderCopy(A,B);CHKERRQ(ierr);
9313501a2bdSLois Curfman McInnes   }
9323a40ed3dSBarry Smith   PetscFunctionReturn(0);
933096963f5SLois Curfman McInnes }
934096963f5SLois Curfman McInnes 
935d9eff348SSatish Balay #include "petscblaslapack.h"
9364a2ae208SSatish Balay #undef __FUNCT__
9374a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIDense"
938f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIDense(Mat inA,PetscScalar alpha)
93944cd7ae7SLois Curfman McInnes {
94044cd7ae7SLois Curfman McInnes   Mat_MPIDense   *A = (Mat_MPIDense*)inA->data;
94144cd7ae7SLois Curfman McInnes   Mat_SeqDense   *a = (Mat_SeqDense*)A->A->data;
942f4df32b1SMatthew Knepley   PetscScalar    oalpha = alpha;
943899cda47SBarry Smith   PetscBLASInt   one = 1,nz = (PetscBLASInt)inA->rmap.n*inA->cmap.N;
944efee365bSSatish Balay   PetscErrorCode ierr;
94544cd7ae7SLois Curfman McInnes 
9463a40ed3dSBarry Smith   PetscFunctionBegin;
947f4df32b1SMatthew Knepley   BLASscal_(&nz,&oalpha,a->v,&one);
948efee365bSSatish Balay   ierr = PetscLogFlops(nz);CHKERRQ(ierr);
9493a40ed3dSBarry Smith   PetscFunctionReturn(0);
95044cd7ae7SLois Curfman McInnes }
95144cd7ae7SLois Curfman McInnes 
9526849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat *);
9538965ea79SLois Curfman McInnes 
9544a2ae208SSatish Balay #undef __FUNCT__
9554a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPIDense"
956dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPIDense(Mat A)
957273d9f13SBarry Smith {
958dfbe8321SBarry Smith   PetscErrorCode ierr;
959273d9f13SBarry Smith 
960273d9f13SBarry Smith   PetscFunctionBegin;
961273d9f13SBarry Smith   ierr =  MatMPIDenseSetPreallocation(A,0);CHKERRQ(ierr);
962273d9f13SBarry Smith   PetscFunctionReturn(0);
963273d9f13SBarry Smith }
964273d9f13SBarry Smith 
965*4ae313f4SHong Zhang #undef __FUNCT__
966*4ae313f4SHong Zhang #define __FUNCT__ "MatMatMultSymbolic_MPIDense_MPIDense"
967*4ae313f4SHong Zhang PetscErrorCode MatMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat *C)
968*4ae313f4SHong Zhang {
969*4ae313f4SHong Zhang   PetscErrorCode ierr;
970*4ae313f4SHong Zhang   PetscInt       m=A->rmap.n,n=B->cmap.n;
971*4ae313f4SHong Zhang   Mat            Cmat;
972*4ae313f4SHong Zhang 
973*4ae313f4SHong Zhang   PetscFunctionBegin;
974*4ae313f4SHong Zhang   if (A->cmap.n != B->rmap.n) SETERRQ2(PETSC_ERR_ARG_SIZ,"A->cmap.n %d != B->rmap.n %d\n",A->cmap.n,B->rmap.n);
975*4ae313f4SHong Zhang   ierr = MatCreate(B->comm,&Cmat);CHKERRQ(ierr);
976*4ae313f4SHong Zhang   ierr = MatSetSizes(Cmat,m,n,A->rmap.N,B->cmap.N);CHKERRQ(ierr);
977*4ae313f4SHong Zhang   ierr = MatSetType(Cmat,MATMPIDENSE);CHKERRQ(ierr);
978*4ae313f4SHong Zhang   ierr = MatMPIDenseSetPreallocation(Cmat,PETSC_NULL);CHKERRQ(ierr);
979*4ae313f4SHong Zhang   Cmat->assembled = PETSC_TRUE;
980*4ae313f4SHong Zhang   *C = Cmat;
981*4ae313f4SHong Zhang   PetscFunctionReturn(0);
982*4ae313f4SHong Zhang }
983*4ae313f4SHong Zhang 
9848965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/
98509dc0095SBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIDense,
98609dc0095SBarry Smith        MatGetRow_MPIDense,
98709dc0095SBarry Smith        MatRestoreRow_MPIDense,
98809dc0095SBarry Smith        MatMult_MPIDense,
98997304618SKris Buschelman /* 4*/ MatMultAdd_MPIDense,
9907c922b88SBarry Smith        MatMultTranspose_MPIDense,
9917c922b88SBarry Smith        MatMultTransposeAdd_MPIDense,
9928965ea79SLois Curfman McInnes        0,
99309dc0095SBarry Smith        0,
99409dc0095SBarry Smith        0,
99597304618SKris Buschelman /*10*/ 0,
99609dc0095SBarry Smith        0,
99709dc0095SBarry Smith        0,
99809dc0095SBarry Smith        0,
99909dc0095SBarry Smith        MatTranspose_MPIDense,
100097304618SKris Buschelman /*15*/ MatGetInfo_MPIDense,
10016e4ee0c6SHong Zhang        MatEqual_MPIDense,
100209dc0095SBarry Smith        MatGetDiagonal_MPIDense,
10035b2fa520SLois Curfman McInnes        MatDiagonalScale_MPIDense,
100409dc0095SBarry Smith        MatNorm_MPIDense,
100597304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIDense,
100609dc0095SBarry Smith        MatAssemblyEnd_MPIDense,
100709dc0095SBarry Smith        0,
100809dc0095SBarry Smith        MatSetOption_MPIDense,
100909dc0095SBarry Smith        MatZeroEntries_MPIDense,
101097304618SKris Buschelman /*25*/ MatZeroRows_MPIDense,
10110ad19415SHong Zhang        MatLUFactorSymbolic_MPIDense,
1012919b68f7SBarry Smith        0,
10130ad19415SHong Zhang        MatCholeskyFactorSymbolic_MPIDense,
1014919b68f7SBarry Smith        0,
101597304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPIDense,
1016273d9f13SBarry Smith        0,
101709dc0095SBarry Smith        0,
101809dc0095SBarry Smith        MatGetArray_MPIDense,
101909dc0095SBarry Smith        MatRestoreArray_MPIDense,
102097304618SKris Buschelman /*35*/ MatDuplicate_MPIDense,
102109dc0095SBarry Smith        0,
102209dc0095SBarry Smith        0,
102309dc0095SBarry Smith        0,
102409dc0095SBarry Smith        0,
102597304618SKris Buschelman /*40*/ 0,
10262ce60cd0SSatish Balay        MatGetSubMatrices_MPIDense,
102709dc0095SBarry Smith        0,
102809dc0095SBarry Smith        MatGetValues_MPIDense,
102909dc0095SBarry Smith        0,
103097304618SKris Buschelman /*45*/ 0,
103109dc0095SBarry Smith        MatScale_MPIDense,
103209dc0095SBarry Smith        0,
103309dc0095SBarry Smith        0,
103409dc0095SBarry Smith        0,
1035521d7252SBarry Smith /*50*/ 0,
103609dc0095SBarry Smith        0,
103709dc0095SBarry Smith        0,
103809dc0095SBarry Smith        0,
103909dc0095SBarry Smith        0,
104097304618SKris Buschelman /*55*/ 0,
104109dc0095SBarry Smith        0,
104209dc0095SBarry Smith        0,
104309dc0095SBarry Smith        0,
104409dc0095SBarry Smith        0,
104597304618SKris Buschelman /*60*/ MatGetSubMatrix_MPIDense,
1046b9b97703SBarry Smith        MatDestroy_MPIDense,
1047b9b97703SBarry Smith        MatView_MPIDense,
1048357abbc8SBarry Smith        0,
104997304618SKris Buschelman        0,
105097304618SKris Buschelman /*65*/ 0,
105197304618SKris Buschelman        0,
105297304618SKris Buschelman        0,
105397304618SKris Buschelman        0,
105497304618SKris Buschelman        0,
105597304618SKris Buschelman /*70*/ 0,
105697304618SKris Buschelman        0,
105797304618SKris Buschelman        0,
105897304618SKris Buschelman        0,
105997304618SKris Buschelman        0,
106097304618SKris Buschelman /*75*/ 0,
106197304618SKris Buschelman        0,
106297304618SKris Buschelman        0,
106397304618SKris Buschelman        0,
106497304618SKris Buschelman        0,
106597304618SKris Buschelman /*80*/ 0,
106697304618SKris Buschelman        0,
106797304618SKris Buschelman        0,
106897304618SKris Buschelman        0,
1069865e5f61SKris Buschelman /*84*/ MatLoad_MPIDense,
1070865e5f61SKris Buschelman        0,
1071865e5f61SKris Buschelman        0,
1072865e5f61SKris Buschelman        0,
1073865e5f61SKris Buschelman        0,
1074865e5f61SKris Buschelman        0,
1075865e5f61SKris Buschelman /*90*/ 0,
1076*4ae313f4SHong Zhang        MatMatMultSymbolic_MPIDense_MPIDense,
1077865e5f61SKris Buschelman        0,
1078865e5f61SKris Buschelman        0,
1079865e5f61SKris Buschelman        0,
1080865e5f61SKris Buschelman /*95*/ 0,
1081865e5f61SKris Buschelman        0,
1082865e5f61SKris Buschelman        0,
1083865e5f61SKris Buschelman        0};
10848965ea79SLois Curfman McInnes 
1085273d9f13SBarry Smith EXTERN_C_BEGIN
10864a2ae208SSatish Balay #undef __FUNCT__
1087a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIDenseSetPreallocation_MPIDense"
1088be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIDenseSetPreallocation_MPIDense(Mat mat,PetscScalar *data)
1089a23d5eceSKris Buschelman {
1090a23d5eceSKris Buschelman   Mat_MPIDense   *a;
1091dfbe8321SBarry Smith   PetscErrorCode ierr;
1092a23d5eceSKris Buschelman 
1093a23d5eceSKris Buschelman   PetscFunctionBegin;
1094a23d5eceSKris Buschelman   mat->preallocated = PETSC_TRUE;
1095a23d5eceSKris Buschelman   /* Note:  For now, when data is specified above, this assumes the user correctly
1096a23d5eceSKris Buschelman    allocates the local dense storage space.  We should add error checking. */
1097a23d5eceSKris Buschelman 
1098a23d5eceSKris Buschelman   a    = (Mat_MPIDense*)mat->data;
1099f69a0ea3SMatthew Knepley   ierr = MatCreate(PETSC_COMM_SELF,&a->A);CHKERRQ(ierr);
1100899cda47SBarry Smith   ierr = MatSetSizes(a->A,mat->rmap.n,mat->cmap.N,mat->rmap.n,mat->cmap.N);CHKERRQ(ierr);
11015c5985e7SKris Buschelman   ierr = MatSetType(a->A,MATSEQDENSE);CHKERRQ(ierr);
11025c5985e7SKris Buschelman   ierr = MatSeqDenseSetPreallocation(a->A,data);CHKERRQ(ierr);
110352e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr);
1104a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1105a23d5eceSKris Buschelman }
1106a23d5eceSKris Buschelman EXTERN_C_END
1107a23d5eceSKris Buschelman 
11080bad9183SKris Buschelman /*MC
1109fafad747SKris Buschelman    MATMPIDENSE - MATMPIDENSE = "mpidense" - A matrix type to be used for distributed dense matrices.
11100bad9183SKris Buschelman 
11110bad9183SKris Buschelman    Options Database Keys:
11120bad9183SKris Buschelman . -mat_type mpidense - sets the matrix type to "mpidense" during a call to MatSetFromOptions()
11130bad9183SKris Buschelman 
11140bad9183SKris Buschelman   Level: beginner
11150bad9183SKris Buschelman 
11160bad9183SKris Buschelman .seealso: MatCreateMPIDense
11170bad9183SKris Buschelman M*/
11180bad9183SKris Buschelman 
1119a23d5eceSKris Buschelman EXTERN_C_BEGIN
1120a23d5eceSKris Buschelman #undef __FUNCT__
11214a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIDense"
1122be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPIDense(Mat mat)
1123273d9f13SBarry Smith {
1124273d9f13SBarry Smith   Mat_MPIDense   *a;
1125dfbe8321SBarry Smith   PetscErrorCode ierr;
1126273d9f13SBarry Smith 
1127273d9f13SBarry Smith   PetscFunctionBegin;
1128b0a32e0cSBarry Smith   ierr              = PetscNew(Mat_MPIDense,&a);CHKERRQ(ierr);
1129b0a32e0cSBarry Smith   mat->data         = (void*)a;
1130273d9f13SBarry Smith   ierr              = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1131273d9f13SBarry Smith   mat->factor       = 0;
1132273d9f13SBarry Smith   mat->mapping      = 0;
1133273d9f13SBarry Smith 
1134273d9f13SBarry Smith   a->factor       = 0;
1135273d9f13SBarry Smith   mat->insertmode = NOT_SET_VALUES;
1136273d9f13SBarry Smith   ierr = MPI_Comm_rank(mat->comm,&a->rank);CHKERRQ(ierr);
1137273d9f13SBarry Smith   ierr = MPI_Comm_size(mat->comm,&a->size);CHKERRQ(ierr);
1138273d9f13SBarry Smith 
1139899cda47SBarry Smith   mat->rmap.bs = mat->cmap.bs = 1;
1140899cda47SBarry Smith   ierr = PetscMapInitialize(mat->comm,&mat->rmap);CHKERRQ(ierr);
1141899cda47SBarry Smith   ierr = PetscMapInitialize(mat->comm,&mat->cmap);CHKERRQ(ierr);
1142899cda47SBarry Smith   a->nvec = mat->cmap.n;
1143273d9f13SBarry Smith 
1144273d9f13SBarry Smith   /* build cache for off array entries formed */
1145273d9f13SBarry Smith   a->donotstash = PETSC_FALSE;
1146273d9f13SBarry Smith   ierr = MatStashCreate_Private(mat->comm,1,&mat->stash);CHKERRQ(ierr);
1147273d9f13SBarry Smith 
1148273d9f13SBarry Smith   /* stuff used for matrix vector multiply */
1149273d9f13SBarry Smith   a->lvec        = 0;
1150273d9f13SBarry Smith   a->Mvctx       = 0;
1151273d9f13SBarry Smith   a->roworiented = PETSC_TRUE;
1152273d9f13SBarry Smith 
1153273d9f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatGetDiagonalBlock_C",
1154273d9f13SBarry Smith                                      "MatGetDiagonalBlock_MPIDense",
1155273d9f13SBarry Smith                                      MatGetDiagonalBlock_MPIDense);CHKERRQ(ierr);
1156a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMPIDenseSetPreallocation_C",
1157a23d5eceSKris Buschelman                                      "MatMPIDenseSetPreallocation_MPIDense",
1158a23d5eceSKris Buschelman                                      MatMPIDenseSetPreallocation_MPIDense);CHKERRQ(ierr);
1159*4ae313f4SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMatMult_mpiaij_mpidense_C",
1160*4ae313f4SHong Zhang                                      "MatMatMult_MPIAIJ_MPIDense",
1161*4ae313f4SHong Zhang                                       MatMatMult_MPIAIJ_MPIDense);CHKERRQ(ierr);
1162*4ae313f4SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C",
1163*4ae313f4SHong Zhang                                      "MatMatMultSymbolic_MPIAIJ_MPIDense",
1164*4ae313f4SHong Zhang                                       MatMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr);
1165*4ae313f4SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C",
1166*4ae313f4SHong Zhang                                      "MatMatMultNumeric_MPIAIJ_MPIDense",
1167*4ae313f4SHong Zhang                                       MatMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr);
1168273d9f13SBarry Smith   PetscFunctionReturn(0);
1169273d9f13SBarry Smith }
1170273d9f13SBarry Smith EXTERN_C_END
1171273d9f13SBarry Smith 
1172209238afSKris Buschelman /*MC
1173002d173eSKris Buschelman    MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices.
1174209238afSKris Buschelman 
1175209238afSKris Buschelman    This matrix type is identical to MATSEQDENSE when constructed with a single process communicator,
1176209238afSKris Buschelman    and MATMPIDENSE otherwise.
1177209238afSKris Buschelman 
1178209238afSKris Buschelman    Options Database Keys:
1179209238afSKris Buschelman . -mat_type dense - sets the matrix type to "dense" during a call to MatSetFromOptions()
1180209238afSKris Buschelman 
1181209238afSKris Buschelman   Level: beginner
1182209238afSKris Buschelman 
1183209238afSKris Buschelman .seealso: MatCreateMPIDense,MATSEQDENSE,MATMPIDENSE
1184209238afSKris Buschelman M*/
1185209238afSKris Buschelman 
1186209238afSKris Buschelman EXTERN_C_BEGIN
1187209238afSKris Buschelman #undef __FUNCT__
1188209238afSKris Buschelman #define __FUNCT__ "MatCreate_Dense"
1189be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_Dense(Mat A)
1190dfbe8321SBarry Smith {
11916849ba73SBarry Smith   PetscErrorCode ierr;
119213f74950SBarry Smith   PetscMPIInt    size;
1193209238afSKris Buschelman 
1194209238afSKris Buschelman   PetscFunctionBegin;
1195209238afSKris Buschelman   ierr = PetscObjectChangeTypeName((PetscObject)A,MATDENSE);CHKERRQ(ierr);
1196209238afSKris Buschelman   ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr);
1197209238afSKris Buschelman   if (size == 1) {
1198209238afSKris Buschelman     ierr = MatSetType(A,MATSEQDENSE);CHKERRQ(ierr);
1199209238afSKris Buschelman   } else {
1200209238afSKris Buschelman     ierr = MatSetType(A,MATMPIDENSE);CHKERRQ(ierr);
1201209238afSKris Buschelman   }
1202209238afSKris Buschelman   PetscFunctionReturn(0);
1203209238afSKris Buschelman }
1204209238afSKris Buschelman EXTERN_C_END
1205209238afSKris Buschelman 
12064a2ae208SSatish Balay #undef __FUNCT__
12074a2ae208SSatish Balay #define __FUNCT__ "MatMPIDenseSetPreallocation"
1208273d9f13SBarry Smith /*@C
1209273d9f13SBarry Smith    MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries
1210273d9f13SBarry Smith 
1211273d9f13SBarry Smith    Not collective
1212273d9f13SBarry Smith 
1213273d9f13SBarry Smith    Input Parameters:
1214273d9f13SBarry Smith .  A - the matrix
1215273d9f13SBarry Smith -  data - optional location of matrix data.  Set data=PETSC_NULL for PETSc
1216273d9f13SBarry Smith    to control all matrix memory allocation.
1217273d9f13SBarry Smith 
1218273d9f13SBarry Smith    Notes:
1219273d9f13SBarry Smith    The dense format is fully compatible with standard Fortran 77
1220273d9f13SBarry Smith    storage by columns.
1221273d9f13SBarry Smith 
1222273d9f13SBarry Smith    The data input variable is intended primarily for Fortran programmers
1223273d9f13SBarry Smith    who wish to allocate their own matrix memory space.  Most users should
1224273d9f13SBarry Smith    set data=PETSC_NULL.
1225273d9f13SBarry Smith 
1226273d9f13SBarry Smith    Level: intermediate
1227273d9f13SBarry Smith 
1228273d9f13SBarry Smith .keywords: matrix,dense, parallel
1229273d9f13SBarry Smith 
1230273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues()
1231273d9f13SBarry Smith @*/
1232be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIDenseSetPreallocation(Mat mat,PetscScalar *data)
1233273d9f13SBarry Smith {
1234dfbe8321SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscScalar *);
1235273d9f13SBarry Smith 
1236273d9f13SBarry Smith   PetscFunctionBegin;
1237565567f0SKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
1238a23d5eceSKris Buschelman   if (f) {
1239a23d5eceSKris Buschelman     ierr = (*f)(mat,data);CHKERRQ(ierr);
1240a23d5eceSKris Buschelman   }
1241273d9f13SBarry Smith   PetscFunctionReturn(0);
1242273d9f13SBarry Smith }
1243273d9f13SBarry Smith 
12444a2ae208SSatish Balay #undef __FUNCT__
12454a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPIDense"
12468965ea79SLois Curfman McInnes /*@C
124739ddd567SLois Curfman McInnes    MatCreateMPIDense - Creates a sparse parallel matrix in dense format.
12488965ea79SLois Curfman McInnes 
1249db81eaa0SLois Curfman McInnes    Collective on MPI_Comm
1250db81eaa0SLois Curfman McInnes 
12518965ea79SLois Curfman McInnes    Input Parameters:
1252db81eaa0SLois Curfman McInnes +  comm - MPI communicator
12538965ea79SLois Curfman McInnes .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1254db81eaa0SLois Curfman McInnes .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
12558965ea79SLois Curfman McInnes .  M - number of global rows (or PETSC_DECIDE to have calculated if m is given)
1256db81eaa0SLois Curfman McInnes .  N - number of global columns (or PETSC_DECIDE to have calculated if n is given)
12577f5ff6fdSBarry Smith -  data - optional location of matrix data.  Set data=PETSC_NULL (PETSC_NULL_SCALAR for Fortran users) for PETSc
1258dfc5480cSLois Curfman McInnes    to control all matrix memory allocation.
12598965ea79SLois Curfman McInnes 
12608965ea79SLois Curfman McInnes    Output Parameter:
1261477f1c0bSLois Curfman McInnes .  A - the matrix
12628965ea79SLois Curfman McInnes 
1263b259b22eSLois Curfman McInnes    Notes:
126439ddd567SLois Curfman McInnes    The dense format is fully compatible with standard Fortran 77
126539ddd567SLois Curfman McInnes    storage by columns.
12668965ea79SLois Curfman McInnes 
126718f449edSLois Curfman McInnes    The data input variable is intended primarily for Fortran programmers
126818f449edSLois Curfman McInnes    who wish to allocate their own matrix memory space.  Most users should
12697f5ff6fdSBarry Smith    set data=PETSC_NULL (PETSC_NULL_SCALAR for Fortran users).
127018f449edSLois Curfman McInnes 
12718965ea79SLois Curfman McInnes    The user MUST specify either the local or global matrix dimensions
12728965ea79SLois Curfman McInnes    (possibly both).
12738965ea79SLois Curfman McInnes 
1274027ccd11SLois Curfman McInnes    Level: intermediate
1275027ccd11SLois Curfman McInnes 
127639ddd567SLois Curfman McInnes .keywords: matrix,dense, parallel
12778965ea79SLois Curfman McInnes 
127839ddd567SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues()
12798965ea79SLois Curfman McInnes @*/
1280be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPIDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A)
12818965ea79SLois Curfman McInnes {
12826849ba73SBarry Smith   PetscErrorCode ierr;
128313f74950SBarry Smith   PetscMPIInt    size;
12848965ea79SLois Curfman McInnes 
12853a40ed3dSBarry Smith   PetscFunctionBegin;
1286f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
1287f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
1288273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
1289273d9f13SBarry Smith   if (size > 1) {
1290273d9f13SBarry Smith     ierr = MatSetType(*A,MATMPIDENSE);CHKERRQ(ierr);
1291273d9f13SBarry Smith     ierr = MatMPIDenseSetPreallocation(*A,data);CHKERRQ(ierr);
1292273d9f13SBarry Smith   } else {
1293273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr);
1294273d9f13SBarry Smith     ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr);
12958c469469SLois Curfman McInnes   }
12963a40ed3dSBarry Smith   PetscFunctionReturn(0);
12978965ea79SLois Curfman McInnes }
12988965ea79SLois Curfman McInnes 
12994a2ae208SSatish Balay #undef __FUNCT__
13004a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIDense"
13016849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat)
13028965ea79SLois Curfman McInnes {
13038965ea79SLois Curfman McInnes   Mat            mat;
13043501a2bdSLois Curfman McInnes   Mat_MPIDense   *a,*oldmat = (Mat_MPIDense*)A->data;
1305dfbe8321SBarry Smith   PetscErrorCode ierr;
13068965ea79SLois Curfman McInnes 
13073a40ed3dSBarry Smith   PetscFunctionBegin;
13088965ea79SLois Curfman McInnes   *newmat       = 0;
1309f69a0ea3SMatthew Knepley   ierr = MatCreate(A->comm,&mat);CHKERRQ(ierr);
1310899cda47SBarry Smith   ierr = MatSetSizes(mat,A->rmap.n,A->cmap.n,A->rmap.N,A->cmap.N);CHKERRQ(ierr);
1311be5d1d56SKris Buschelman   ierr = MatSetType(mat,A->type_name);CHKERRQ(ierr);
1312834f8fabSBarry Smith   a                 = (Mat_MPIDense*)mat->data;
1313e04c1aa4SHong Zhang   ierr              = PetscMemcpy(mat->ops,A->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
13143501a2bdSLois Curfman McInnes   mat->factor       = A->factor;
1315c456f294SBarry Smith   mat->assembled    = PETSC_TRUE;
1316273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
13178965ea79SLois Curfman McInnes 
1318899cda47SBarry Smith   mat->rmap.rstart     = A->rmap.rstart;
1319899cda47SBarry Smith   mat->rmap.rend       = A->rmap.rend;
13208965ea79SLois Curfman McInnes   a->size              = oldmat->size;
13218965ea79SLois Curfman McInnes   a->rank              = oldmat->rank;
1322e0fa3b82SLois Curfman McInnes   mat->insertmode      = NOT_SET_VALUES;
1323b9b97703SBarry Smith   a->nvec              = oldmat->nvec;
13243782ba37SSatish Balay   a->donotstash        = oldmat->donotstash;
1325e04c1aa4SHong Zhang 
1326899cda47SBarry Smith   ierr = PetscMalloc((a->size+1)*sizeof(PetscInt),&mat->rmap.range);CHKERRQ(ierr);
1327899cda47SBarry Smith   ierr = PetscMalloc((a->size+1)*sizeof(PetscInt),&mat->cmap.range);CHKERRQ(ierr);
1328899cda47SBarry Smith   ierr = PetscMemcpy(mat->rmap.range,A->rmap.range,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr);
1329899cda47SBarry Smith   ierr = PetscMemcpy(mat->cmap.range,A->cmap.range,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr);
13308798bf22SSatish Balay   ierr = MatStashCreate_Private(A->comm,1,&mat->stash);CHKERRQ(ierr);
13318965ea79SLois Curfman McInnes 
1332329f5518SBarry Smith   ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr);
13335609ef8eSBarry Smith   ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
133452e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr);
13358965ea79SLois Curfman McInnes   *newmat = mat;
13363a40ed3dSBarry Smith   PetscFunctionReturn(0);
13378965ea79SLois Curfman McInnes }
13388965ea79SLois Curfman McInnes 
1339e090d566SSatish Balay #include "petscsys.h"
13408965ea79SLois Curfman McInnes 
13414a2ae208SSatish Balay #undef __FUNCT__
13424a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIDense_DenseInFile"
1343f69a0ea3SMatthew Knepley PetscErrorCode MatLoad_MPIDense_DenseInFile(MPI_Comm comm,PetscInt fd,PetscInt M,PetscInt N, MatType type,Mat *newmat)
134490ace30eSBarry Smith {
13456849ba73SBarry Smith   PetscErrorCode ierr;
134632dcc486SBarry Smith   PetscMPIInt    rank,size;
134713f74950SBarry Smith   PetscInt       *rowners,i,m,nz,j;
134887828ca2SBarry Smith   PetscScalar    *array,*vals,*vals_ptr;
134990ace30eSBarry Smith   MPI_Status     status;
135090ace30eSBarry Smith 
13513a40ed3dSBarry Smith   PetscFunctionBegin;
1352d132466eSBarry Smith   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
1353d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
135490ace30eSBarry Smith 
135590ace30eSBarry Smith   /* determine ownership of all rows */
135690ace30eSBarry Smith   m          = M/size + ((M % size) > rank);
135713f74950SBarry Smith   ierr       = PetscMalloc((size+2)*sizeof(PetscInt),&rowners);CHKERRQ(ierr);
135813f74950SBarry Smith   ierr       = MPI_Allgather(&m,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr);
135990ace30eSBarry Smith   rowners[0] = 0;
136090ace30eSBarry Smith   for (i=2; i<=size; i++) {
136190ace30eSBarry Smith     rowners[i] += rowners[i-1];
136290ace30eSBarry Smith   }
136390ace30eSBarry Smith 
1364f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,newmat);CHKERRQ(ierr);
1365f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*newmat,m,PETSC_DECIDE,M,N);CHKERRQ(ierr);
1366be5d1d56SKris Buschelman   ierr = MatSetType(*newmat,type);CHKERRQ(ierr);
1367878740d9SKris Buschelman   ierr = MatMPIDenseSetPreallocation(*newmat,PETSC_NULL);CHKERRQ(ierr);
136890ace30eSBarry Smith   ierr = MatGetArray(*newmat,&array);CHKERRQ(ierr);
136990ace30eSBarry Smith 
137090ace30eSBarry Smith   if (!rank) {
137187828ca2SBarry Smith     ierr = PetscMalloc(m*N*sizeof(PetscScalar),&vals);CHKERRQ(ierr);
137290ace30eSBarry Smith 
137390ace30eSBarry Smith     /* read in my part of the matrix numerical values  */
13740752156aSBarry Smith     ierr = PetscBinaryRead(fd,vals,m*N,PETSC_SCALAR);CHKERRQ(ierr);
137590ace30eSBarry Smith 
137690ace30eSBarry Smith     /* insert into matrix-by row (this is why cannot directly read into array */
137790ace30eSBarry Smith     vals_ptr = vals;
137890ace30eSBarry Smith     for (i=0; i<m; i++) {
137990ace30eSBarry Smith       for (j=0; j<N; j++) {
138090ace30eSBarry Smith         array[i + j*m] = *vals_ptr++;
138190ace30eSBarry Smith       }
138290ace30eSBarry Smith     }
138390ace30eSBarry Smith 
138490ace30eSBarry Smith     /* read in other processors and ship out */
138590ace30eSBarry Smith     for (i=1; i<size; i++) {
138690ace30eSBarry Smith       nz   = (rowners[i+1] - rowners[i])*N;
13870752156aSBarry Smith       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
1388ca161407SBarry Smith       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,(*newmat)->tag,comm);CHKERRQ(ierr);
138990ace30eSBarry Smith     }
13903a40ed3dSBarry Smith   } else {
139190ace30eSBarry Smith     /* receive numeric values */
139287828ca2SBarry Smith     ierr = PetscMalloc(m*N*sizeof(PetscScalar),&vals);CHKERRQ(ierr);
139390ace30eSBarry Smith 
139490ace30eSBarry Smith     /* receive message of values*/
1395ca161407SBarry Smith     ierr = MPI_Recv(vals,m*N,MPIU_SCALAR,0,(*newmat)->tag,comm,&status);CHKERRQ(ierr);
139690ace30eSBarry Smith 
139790ace30eSBarry Smith     /* insert into matrix-by row (this is why cannot directly read into array */
139890ace30eSBarry Smith     vals_ptr = vals;
139990ace30eSBarry Smith     for (i=0; i<m; i++) {
140090ace30eSBarry Smith       for (j=0; j<N; j++) {
140190ace30eSBarry Smith         array[i + j*m] = *vals_ptr++;
140290ace30eSBarry Smith       }
140390ace30eSBarry Smith     }
140490ace30eSBarry Smith   }
1405606d414cSSatish Balay   ierr = PetscFree(rowners);CHKERRQ(ierr);
1406606d414cSSatish Balay   ierr = PetscFree(vals);CHKERRQ(ierr);
14076d4a8577SBarry Smith   ierr = MatAssemblyBegin(*newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
14086d4a8577SBarry Smith   ierr = MatAssemblyEnd(*newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
14093a40ed3dSBarry Smith   PetscFunctionReturn(0);
141090ace30eSBarry Smith }
141190ace30eSBarry Smith 
14124a2ae208SSatish Balay #undef __FUNCT__
14134a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIDense"
1414f69a0ea3SMatthew Knepley PetscErrorCode MatLoad_MPIDense(PetscViewer viewer, MatType type,Mat *newmat)
14158965ea79SLois Curfman McInnes {
14168965ea79SLois Curfman McInnes   Mat            A;
141787828ca2SBarry Smith   PetscScalar    *vals,*svals;
141819bcc07fSBarry Smith   MPI_Comm       comm = ((PetscObject)viewer)->comm;
14198965ea79SLois Curfman McInnes   MPI_Status     status;
142013f74950SBarry Smith   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*rowners,*sndcounts,m,maxnz;
142113f74950SBarry Smith   PetscInt       header[4],*rowlengths = 0,M,N,*cols;
142213f74950SBarry Smith   PetscInt       *ourlens,*procsnz = 0,*offlens,jj,*mycols,*smycols;
142313f74950SBarry Smith   PetscInt       i,nz,j,rstart,rend;
142413f74950SBarry Smith   int            fd;
14256849ba73SBarry Smith   PetscErrorCode ierr;
14268965ea79SLois Curfman McInnes 
14273a40ed3dSBarry Smith   PetscFunctionBegin;
1428d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
1429d132466eSBarry Smith   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
14308965ea79SLois Curfman McInnes   if (!rank) {
1431b0a32e0cSBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
14320752156aSBarry Smith     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
1433552e946dSBarry Smith     if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
14348965ea79SLois Curfman McInnes   }
14358965ea79SLois Curfman McInnes 
143613f74950SBarry Smith   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
143790ace30eSBarry Smith   M = header[1]; N = header[2]; nz = header[3];
143890ace30eSBarry Smith 
143990ace30eSBarry Smith   /*
144090ace30eSBarry Smith        Handle case where matrix is stored on disk as a dense matrix
144190ace30eSBarry Smith   */
144290ace30eSBarry Smith   if (nz == MATRIX_BINARY_FORMAT_DENSE) {
1443be5d1d56SKris Buschelman     ierr = MatLoad_MPIDense_DenseInFile(comm,fd,M,N,type,newmat);CHKERRQ(ierr);
14443a40ed3dSBarry Smith     PetscFunctionReturn(0);
144590ace30eSBarry Smith   }
144690ace30eSBarry Smith 
14478965ea79SLois Curfman McInnes   /* determine ownership of all rows */
14488965ea79SLois Curfman McInnes   m          = M/size + ((M % size) > rank);
144913f74950SBarry Smith   ierr       = PetscMalloc((size+2)*sizeof(PetscInt),&rowners);CHKERRQ(ierr);
1450ca161407SBarry Smith   ierr       = MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
14518965ea79SLois Curfman McInnes   rowners[0] = 0;
14528965ea79SLois Curfman McInnes   for (i=2; i<=size; i++) {
14538965ea79SLois Curfman McInnes     rowners[i] += rowners[i-1];
14548965ea79SLois Curfman McInnes   }
14558965ea79SLois Curfman McInnes   rstart = rowners[rank];
14568965ea79SLois Curfman McInnes   rend   = rowners[rank+1];
14578965ea79SLois Curfman McInnes 
14588965ea79SLois Curfman McInnes   /* distribute row lengths to all processors */
145913f74950SBarry Smith   ierr    = PetscMalloc(2*(rend-rstart+1)*sizeof(PetscInt),&ourlens);CHKERRQ(ierr);
14608965ea79SLois Curfman McInnes   offlens = ourlens + (rend-rstart);
14618965ea79SLois Curfman McInnes   if (!rank) {
146213f74950SBarry Smith     ierr = PetscMalloc(M*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
14630752156aSBarry Smith     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
146413f74950SBarry Smith     ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr);
14658965ea79SLois Curfman McInnes     for (i=0; i<size; i++) sndcounts[i] = rowners[i+1] - rowners[i];
14661466f1e1SBarry Smith     ierr = MPI_Scatterv(rowlengths,sndcounts,rowners,MPIU_INT,ourlens,rend-rstart,MPIU_INT,0,comm);CHKERRQ(ierr);
1467606d414cSSatish Balay     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
1468ca161407SBarry Smith   } else {
14691466f1e1SBarry Smith     ierr = MPI_Scatterv(0,0,0,MPIU_INT,ourlens,rend-rstart,MPIU_INT,0,comm);CHKERRQ(ierr);
14708965ea79SLois Curfman McInnes   }
14718965ea79SLois Curfman McInnes 
14728965ea79SLois Curfman McInnes   if (!rank) {
14738965ea79SLois Curfman McInnes     /* calculate the number of nonzeros on each processor */
147413f74950SBarry Smith     ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr);
147513f74950SBarry Smith     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
14768965ea79SLois Curfman McInnes     for (i=0; i<size; i++) {
14778965ea79SLois Curfman McInnes       for (j=rowners[i]; j< rowners[i+1]; j++) {
14788965ea79SLois Curfman McInnes         procsnz[i] += rowlengths[j];
14798965ea79SLois Curfman McInnes       }
14808965ea79SLois Curfman McInnes     }
1481606d414cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
14828965ea79SLois Curfman McInnes 
14838965ea79SLois Curfman McInnes     /* determine max buffer needed and allocate it */
14848965ea79SLois Curfman McInnes     maxnz = 0;
14858965ea79SLois Curfman McInnes     for (i=0; i<size; i++) {
14860452661fSBarry Smith       maxnz = PetscMax(maxnz,procsnz[i]);
14878965ea79SLois Curfman McInnes     }
148813f74950SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr);
14898965ea79SLois Curfman McInnes 
14908965ea79SLois Curfman McInnes     /* read in my part of the matrix column indices  */
14918965ea79SLois Curfman McInnes     nz = procsnz[0];
149213f74950SBarry Smith     ierr = PetscMalloc(nz*sizeof(PetscInt),&mycols);CHKERRQ(ierr);
14930752156aSBarry Smith     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
14948965ea79SLois Curfman McInnes 
14958965ea79SLois Curfman McInnes     /* read in every one elses and ship off */
14968965ea79SLois Curfman McInnes     for (i=1; i<size; i++) {
14978965ea79SLois Curfman McInnes       nz   = procsnz[i];
14980752156aSBarry Smith       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
149913f74950SBarry Smith       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
15008965ea79SLois Curfman McInnes     }
1501606d414cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
15023a40ed3dSBarry Smith   } else {
15038965ea79SLois Curfman McInnes     /* determine buffer space needed for message */
15048965ea79SLois Curfman McInnes     nz = 0;
15058965ea79SLois Curfman McInnes     for (i=0; i<m; i++) {
15068965ea79SLois Curfman McInnes       nz += ourlens[i];
15078965ea79SLois Curfman McInnes     }
150813f74950SBarry Smith     ierr = PetscMalloc((nz+1)*sizeof(PetscInt),&mycols);CHKERRQ(ierr);
15098965ea79SLois Curfman McInnes 
15108965ea79SLois Curfman McInnes     /* receive message of column indices*/
151113f74950SBarry Smith     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
151213f74950SBarry Smith     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
151329bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
15148965ea79SLois Curfman McInnes   }
15158965ea79SLois Curfman McInnes 
15168965ea79SLois Curfman McInnes   /* loop over local rows, determining number of off diagonal entries */
151713f74950SBarry Smith   ierr = PetscMemzero(offlens,m*sizeof(PetscInt));CHKERRQ(ierr);
15188965ea79SLois Curfman McInnes   jj = 0;
15198965ea79SLois Curfman McInnes   for (i=0; i<m; i++) {
15208965ea79SLois Curfman McInnes     for (j=0; j<ourlens[i]; j++) {
15218965ea79SLois Curfman McInnes       if (mycols[jj] < rstart || mycols[jj] >= rend) offlens[i]++;
15228965ea79SLois Curfman McInnes       jj++;
15238965ea79SLois Curfman McInnes     }
15248965ea79SLois Curfman McInnes   }
15258965ea79SLois Curfman McInnes 
15268965ea79SLois Curfman McInnes   /* create our matrix */
15278965ea79SLois Curfman McInnes   for (i=0; i<m; i++) {
15288965ea79SLois Curfman McInnes     ourlens[i] -= offlens[i];
15298965ea79SLois Curfman McInnes   }
1530f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,newmat);CHKERRQ(ierr);
1531f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*newmat,m,PETSC_DECIDE,M,N);CHKERRQ(ierr);
1532be5d1d56SKris Buschelman   ierr = MatSetType(*newmat,type);CHKERRQ(ierr);
1533878740d9SKris Buschelman   ierr = MatMPIDenseSetPreallocation(*newmat,PETSC_NULL);CHKERRQ(ierr);
15348965ea79SLois Curfman McInnes   A = *newmat;
15358965ea79SLois Curfman McInnes   for (i=0; i<m; i++) {
15368965ea79SLois Curfman McInnes     ourlens[i] += offlens[i];
15378965ea79SLois Curfman McInnes   }
15388965ea79SLois Curfman McInnes 
15398965ea79SLois Curfman McInnes   if (!rank) {
154087828ca2SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&vals);CHKERRQ(ierr);
15418965ea79SLois Curfman McInnes 
15428965ea79SLois Curfman McInnes     /* read in my part of the matrix numerical values  */
15438965ea79SLois Curfman McInnes     nz = procsnz[0];
15440752156aSBarry Smith     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
15458965ea79SLois Curfman McInnes 
15468965ea79SLois Curfman McInnes     /* insert into matrix */
15478965ea79SLois Curfman McInnes     jj      = rstart;
15488965ea79SLois Curfman McInnes     smycols = mycols;
15498965ea79SLois Curfman McInnes     svals   = vals;
15508965ea79SLois Curfman McInnes     for (i=0; i<m; i++) {
15518965ea79SLois Curfman McInnes       ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr);
15528965ea79SLois Curfman McInnes       smycols += ourlens[i];
15538965ea79SLois Curfman McInnes       svals   += ourlens[i];
15548965ea79SLois Curfman McInnes       jj++;
15558965ea79SLois Curfman McInnes     }
15568965ea79SLois Curfman McInnes 
15578965ea79SLois Curfman McInnes     /* read in other processors and ship out */
15588965ea79SLois Curfman McInnes     for (i=1; i<size; i++) {
15598965ea79SLois Curfman McInnes       nz   = procsnz[i];
15600752156aSBarry Smith       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
1561ca161407SBarry Smith       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr);
15628965ea79SLois Curfman McInnes     }
1563606d414cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
15643a40ed3dSBarry Smith   } else {
15658965ea79SLois Curfman McInnes     /* receive numeric values */
156684d528b1SBarry Smith     ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&vals);CHKERRQ(ierr);
15678965ea79SLois Curfman McInnes 
15688965ea79SLois Curfman McInnes     /* receive message of values*/
1569ca161407SBarry Smith     ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr);
1570ca161407SBarry Smith     ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
157129bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
15728965ea79SLois Curfman McInnes 
15738965ea79SLois Curfman McInnes     /* insert into matrix */
15748965ea79SLois Curfman McInnes     jj      = rstart;
15758965ea79SLois Curfman McInnes     smycols = mycols;
15768965ea79SLois Curfman McInnes     svals   = vals;
15778965ea79SLois Curfman McInnes     for (i=0; i<m; i++) {
15788965ea79SLois Curfman McInnes       ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr);
15798965ea79SLois Curfman McInnes       smycols += ourlens[i];
15808965ea79SLois Curfman McInnes       svals   += ourlens[i];
15818965ea79SLois Curfman McInnes       jj++;
15828965ea79SLois Curfman McInnes     }
15838965ea79SLois Curfman McInnes   }
1584606d414cSSatish Balay   ierr = PetscFree(ourlens);CHKERRQ(ierr);
1585606d414cSSatish Balay   ierr = PetscFree(vals);CHKERRQ(ierr);
1586606d414cSSatish Balay   ierr = PetscFree(mycols);CHKERRQ(ierr);
1587606d414cSSatish Balay   ierr = PetscFree(rowners);CHKERRQ(ierr);
15888965ea79SLois Curfman McInnes 
15896d4a8577SBarry Smith   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
15906d4a8577SBarry Smith   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
15913a40ed3dSBarry Smith   PetscFunctionReturn(0);
15928965ea79SLois Curfman McInnes }
159390ace30eSBarry Smith 
15946e4ee0c6SHong Zhang #undef __FUNCT__
15956e4ee0c6SHong Zhang #define __FUNCT__ "MatEqual_MPIDense"
15966e4ee0c6SHong Zhang PetscErrorCode MatEqual_MPIDense(Mat A,Mat B,PetscTruth *flag)
15976e4ee0c6SHong Zhang {
15986e4ee0c6SHong Zhang   Mat_MPIDense   *matB = (Mat_MPIDense*)B->data,*matA = (Mat_MPIDense*)A->data;
15996e4ee0c6SHong Zhang   Mat            a,b;
16006e4ee0c6SHong Zhang   PetscTruth     flg;
16016e4ee0c6SHong Zhang   PetscErrorCode ierr;
160290ace30eSBarry Smith 
16036e4ee0c6SHong Zhang   PetscFunctionBegin;
16046e4ee0c6SHong Zhang   a = matA->A;
16056e4ee0c6SHong Zhang   b = matB->A;
16066e4ee0c6SHong Zhang   ierr = MatEqual(a,b,&flg);CHKERRQ(ierr);
16076e4ee0c6SHong Zhang   PetscFunctionReturn(0);
16086e4ee0c6SHong Zhang }
160990ace30eSBarry Smith 
161090ace30eSBarry Smith 
161190ace30eSBarry Smith 
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