1be1d678aSKris Buschelman 2ed3cc1f0SBarry Smith /* 3ed3cc1f0SBarry Smith Basic functions for basic parallel dense matrices. 4ed3cc1f0SBarry Smith */ 5ed3cc1f0SBarry Smith 604fea9ffSBarry Smith 7c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h> /*I "petscmat.h" I*/ 88949adfdSHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 98965ea79SLois Curfman McInnes 10ba8c8a56SBarry Smith #undef __FUNCT__ 11ab92ecdeSBarry Smith #define __FUNCT__ "MatDenseGetLocalMatrix" 12ab92ecdeSBarry Smith /*@ 13ab92ecdeSBarry Smith 14ab92ecdeSBarry Smith MatDenseGetLocalMatrix - For a MATMPIDENSE or MATSEQDENSE matrix returns the sequential 15ab92ecdeSBarry Smith matrix that represents the operator. For sequential matrices it returns itself. 16ab92ecdeSBarry Smith 17ab92ecdeSBarry Smith Input Parameter: 18ab92ecdeSBarry Smith . A - the Seq or MPI dense matrix 19ab92ecdeSBarry Smith 20ab92ecdeSBarry Smith Output Parameter: 21ab92ecdeSBarry Smith . B - the inner matrix 22ab92ecdeSBarry Smith 238e6c10adSSatish Balay Level: intermediate 248e6c10adSSatish Balay 25ab92ecdeSBarry Smith @*/ 26ab92ecdeSBarry Smith PetscErrorCode MatDenseGetLocalMatrix(Mat A,Mat *B) 27ab92ecdeSBarry Smith { 28ab92ecdeSBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 29ab92ecdeSBarry Smith PetscErrorCode ierr; 30ace3abfcSBarry Smith PetscBool flg; 31ab92ecdeSBarry Smith 32ab92ecdeSBarry Smith PetscFunctionBegin; 33251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIDENSE,&flg);CHKERRQ(ierr); 342205254eSKarl Rupp if (flg) *B = mat->A; 352205254eSKarl Rupp else *B = A; 36ab92ecdeSBarry Smith PetscFunctionReturn(0); 37ab92ecdeSBarry Smith } 38ab92ecdeSBarry Smith 39ab92ecdeSBarry Smith #undef __FUNCT__ 40ba8c8a56SBarry Smith #define __FUNCT__ "MatGetRow_MPIDense" 41ba8c8a56SBarry Smith PetscErrorCode MatGetRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 42ba8c8a56SBarry Smith { 43ba8c8a56SBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 44ba8c8a56SBarry Smith PetscErrorCode ierr; 45d0f46423SBarry Smith PetscInt lrow,rstart = A->rmap->rstart,rend = A->rmap->rend; 46ba8c8a56SBarry Smith 47ba8c8a56SBarry Smith PetscFunctionBegin; 48e7e72b3dSBarry Smith if (row < rstart || row >= rend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows"); 49ba8c8a56SBarry Smith lrow = row - rstart; 50ba8c8a56SBarry Smith ierr = MatGetRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v);CHKERRQ(ierr); 51ba8c8a56SBarry Smith PetscFunctionReturn(0); 52ba8c8a56SBarry Smith } 53ba8c8a56SBarry Smith 54ba8c8a56SBarry Smith #undef __FUNCT__ 55ba8c8a56SBarry Smith #define __FUNCT__ "MatRestoreRow_MPIDense" 56ba8c8a56SBarry Smith PetscErrorCode MatRestoreRow_MPIDense(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 57ba8c8a56SBarry Smith { 58ba8c8a56SBarry Smith PetscErrorCode ierr; 59ba8c8a56SBarry Smith 60ba8c8a56SBarry Smith PetscFunctionBegin; 61ba8c8a56SBarry Smith if (idx) {ierr = PetscFree(*idx);CHKERRQ(ierr);} 62ba8c8a56SBarry Smith if (v) {ierr = PetscFree(*v);CHKERRQ(ierr);} 63ba8c8a56SBarry Smith PetscFunctionReturn(0); 64ba8c8a56SBarry Smith } 65ba8c8a56SBarry Smith 664a2ae208SSatish Balay #undef __FUNCT__ 674a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIDense" 6811bd1e4dSLisandro Dalcin PetscErrorCode MatGetDiagonalBlock_MPIDense(Mat A,Mat *a) 690de54da6SSatish Balay { 700de54da6SSatish Balay Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 716849ba73SBarry Smith PetscErrorCode ierr; 72d0f46423SBarry Smith PetscInt m = A->rmap->n,rstart = A->rmap->rstart; 7387828ca2SBarry Smith PetscScalar *array; 740de54da6SSatish Balay MPI_Comm comm; 7511bd1e4dSLisandro Dalcin Mat B; 760de54da6SSatish Balay 770de54da6SSatish Balay PetscFunctionBegin; 78e32f2f54SBarry Smith if (A->rmap->N != A->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only square matrices supported."); 790de54da6SSatish Balay 8011bd1e4dSLisandro Dalcin ierr = PetscObjectQuery((PetscObject)A,"DiagonalBlock",(PetscObject*)&B);CHKERRQ(ierr); 8111bd1e4dSLisandro Dalcin if (!B) { 820de54da6SSatish Balay ierr = PetscObjectGetComm((PetscObject)(mdn->A),&comm);CHKERRQ(ierr); 8311bd1e4dSLisandro Dalcin ierr = MatCreate(comm,&B);CHKERRQ(ierr); 8411bd1e4dSLisandro Dalcin ierr = MatSetSizes(B,m,m,m,m);CHKERRQ(ierr); 8511bd1e4dSLisandro Dalcin ierr = MatSetType(B,((PetscObject)mdn->A)->type_name);CHKERRQ(ierr); 868c778c55SBarry Smith ierr = MatDenseGetArray(mdn->A,&array);CHKERRQ(ierr); 8711bd1e4dSLisandro Dalcin ierr = MatSeqDenseSetPreallocation(B,array+m*rstart);CHKERRQ(ierr); 888c778c55SBarry Smith ierr = MatDenseRestoreArray(mdn->A,&array);CHKERRQ(ierr); 8911bd1e4dSLisandro Dalcin ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 9011bd1e4dSLisandro Dalcin ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 9111bd1e4dSLisandro Dalcin ierr = PetscObjectCompose((PetscObject)A,"DiagonalBlock",(PetscObject)B);CHKERRQ(ierr); 9211bd1e4dSLisandro Dalcin *a = B; 9311bd1e4dSLisandro Dalcin ierr = MatDestroy(&B);CHKERRQ(ierr); 942205254eSKarl Rupp } else *a = B; 950de54da6SSatish Balay PetscFunctionReturn(0); 960de54da6SSatish Balay } 970de54da6SSatish Balay 984a2ae208SSatish Balay #undef __FUNCT__ 994a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIDense" 10013f74950SBarry Smith PetscErrorCode MatSetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],const PetscScalar v[],InsertMode addv) 1018965ea79SLois Curfman McInnes { 10239b7565bSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)mat->data; 103dfbe8321SBarry Smith PetscErrorCode ierr; 104d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 105ace3abfcSBarry Smith PetscBool roworiented = A->roworiented; 1068965ea79SLois Curfman McInnes 1073a40ed3dSBarry Smith PetscFunctionBegin; 1088965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 1095ef9f2a5SBarry Smith if (idxm[i] < 0) continue; 110e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 1118965ea79SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 1128965ea79SLois Curfman McInnes row = idxm[i] - rstart; 11339b7565bSBarry Smith if (roworiented) { 11439b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv);CHKERRQ(ierr); 1153a40ed3dSBarry Smith } else { 1168965ea79SLois Curfman McInnes for (j=0; j<n; j++) { 1175ef9f2a5SBarry Smith if (idxn[j] < 0) continue; 118e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 11939b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv);CHKERRQ(ierr); 12039b7565bSBarry Smith } 1218965ea79SLois Curfman McInnes } 1222205254eSKarl Rupp } else if (!A->donotstash) { 1235080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 12439b7565bSBarry Smith if (roworiented) { 125b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,idxm[i],n,idxn,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 126d36fbae8SSatish Balay } else { 127b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,idxm[i],n,idxn,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 12839b7565bSBarry Smith } 129b49de8d1SLois Curfman McInnes } 130b49de8d1SLois Curfman McInnes } 1313a40ed3dSBarry Smith PetscFunctionReturn(0); 132b49de8d1SLois Curfman McInnes } 133b49de8d1SLois Curfman McInnes 1344a2ae208SSatish Balay #undef __FUNCT__ 1354a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIDense" 13613f74950SBarry Smith PetscErrorCode MatGetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 137b49de8d1SLois Curfman McInnes { 138b49de8d1SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 139dfbe8321SBarry Smith PetscErrorCode ierr; 140d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 141b49de8d1SLois Curfman McInnes 1423a40ed3dSBarry Smith PetscFunctionBegin; 143b49de8d1SLois Curfman McInnes for (i=0; i<m; i++) { 144e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); */ 145e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 146b49de8d1SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 147b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 148b49de8d1SLois Curfman McInnes for (j=0; j<n; j++) { 149e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); */ 150e7e72b3dSBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 151b49de8d1SLois Curfman McInnes ierr = MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j);CHKERRQ(ierr); 152b49de8d1SLois Curfman McInnes } 153e7e72b3dSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 1548965ea79SLois Curfman McInnes } 1553a40ed3dSBarry Smith PetscFunctionReturn(0); 1568965ea79SLois Curfman McInnes } 1578965ea79SLois Curfman McInnes 1584a2ae208SSatish Balay #undef __FUNCT__ 1598c778c55SBarry Smith #define __FUNCT__ "MatDenseGetArray_MPIDense" 1608c778c55SBarry Smith PetscErrorCode MatDenseGetArray_MPIDense(Mat A,PetscScalar *array[]) 161ff14e315SSatish Balay { 162ff14e315SSatish Balay Mat_MPIDense *a = (Mat_MPIDense*)A->data; 163dfbe8321SBarry Smith PetscErrorCode ierr; 164ff14e315SSatish Balay 1653a40ed3dSBarry Smith PetscFunctionBegin; 1668c778c55SBarry Smith ierr = MatDenseGetArray(a->A,array);CHKERRQ(ierr); 1673a40ed3dSBarry Smith PetscFunctionReturn(0); 168ff14e315SSatish Balay } 169ff14e315SSatish Balay 1704a2ae208SSatish Balay #undef __FUNCT__ 1714a2ae208SSatish Balay #define __FUNCT__ "MatGetSubMatrix_MPIDense" 1724aa3045dSJed Brown static PetscErrorCode MatGetSubMatrix_MPIDense(Mat A,IS isrow,IS iscol,MatReuse scall,Mat *B) 173ca3fa75bSLois Curfman McInnes { 174ca3fa75bSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data,*newmatd; 175ca3fa75bSLois Curfman McInnes Mat_SeqDense *lmat = (Mat_SeqDense*)mat->A->data; 1766849ba73SBarry Smith PetscErrorCode ierr; 1774aa3045dSJed Brown PetscInt i,j,rstart,rend,nrows,ncols,Ncols,nlrows,nlcols; 1785d0c19d7SBarry Smith const PetscInt *irow,*icol; 17987828ca2SBarry Smith PetscScalar *av,*bv,*v = lmat->v; 180ca3fa75bSLois Curfman McInnes Mat newmat; 1814aa3045dSJed Brown IS iscol_local; 182ca3fa75bSLois Curfman McInnes 183ca3fa75bSLois Curfman McInnes PetscFunctionBegin; 1844aa3045dSJed Brown ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 185ca3fa75bSLois Curfman McInnes ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr); 1864aa3045dSJed Brown ierr = ISGetIndices(iscol_local,&icol);CHKERRQ(ierr); 187b9b97703SBarry Smith ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr); 188b9b97703SBarry Smith ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr); 1894aa3045dSJed Brown ierr = ISGetSize(iscol,&Ncols);CHKERRQ(ierr); /* global number of columns, size of iscol_local */ 190ca3fa75bSLois Curfman McInnes 191ca3fa75bSLois Curfman McInnes /* No parallel redistribution currently supported! Should really check each index set 1927eba5e9cSLois Curfman McInnes to comfirm that it is OK. ... Currently supports only submatrix same partitioning as 1937eba5e9cSLois Curfman McInnes original matrix! */ 194ca3fa75bSLois Curfman McInnes 195ca3fa75bSLois Curfman McInnes ierr = MatGetLocalSize(A,&nlrows,&nlcols);CHKERRQ(ierr); 1967eba5e9cSLois Curfman McInnes ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr); 197ca3fa75bSLois Curfman McInnes 198ca3fa75bSLois Curfman McInnes /* Check submatrix call */ 199ca3fa75bSLois Curfman McInnes if (scall == MAT_REUSE_MATRIX) { 200e32f2f54SBarry Smith /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */ 2017eba5e9cSLois Curfman McInnes /* Really need to test rows and column sizes! */ 202ca3fa75bSLois Curfman McInnes newmat = *B; 203ca3fa75bSLois Curfman McInnes } else { 204ca3fa75bSLois Curfman McInnes /* Create and fill new matrix */ 205ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&newmat);CHKERRQ(ierr); 2064aa3045dSJed Brown ierr = MatSetSizes(newmat,nrows,ncols,PETSC_DECIDE,Ncols);CHKERRQ(ierr); 2077adad957SLisandro Dalcin ierr = MatSetType(newmat,((PetscObject)A)->type_name);CHKERRQ(ierr); 2080298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr); 209ca3fa75bSLois Curfman McInnes } 210ca3fa75bSLois Curfman McInnes 211ca3fa75bSLois Curfman McInnes /* Now extract the data pointers and do the copy, column at a time */ 212ca3fa75bSLois Curfman McInnes newmatd = (Mat_MPIDense*)newmat->data; 213ca3fa75bSLois Curfman McInnes bv = ((Mat_SeqDense*)newmatd->A->data)->v; 214ca3fa75bSLois Curfman McInnes 2154aa3045dSJed Brown for (i=0; i<Ncols; i++) { 21625a33276SHong Zhang av = v + ((Mat_SeqDense*)mat->A->data)->lda*icol[i]; 217ca3fa75bSLois Curfman McInnes for (j=0; j<nrows; j++) { 2187eba5e9cSLois Curfman McInnes *bv++ = av[irow[j] - rstart]; 219ca3fa75bSLois Curfman McInnes } 220ca3fa75bSLois Curfman McInnes } 221ca3fa75bSLois Curfman McInnes 222ca3fa75bSLois Curfman McInnes /* Assemble the matrices so that the correct flags are set */ 223ca3fa75bSLois Curfman McInnes ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 224ca3fa75bSLois Curfman McInnes ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 225ca3fa75bSLois Curfman McInnes 226ca3fa75bSLois Curfman McInnes /* Free work space */ 227ca3fa75bSLois Curfman McInnes ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr); 2285bdf786aSShri Abhyankar ierr = ISRestoreIndices(iscol_local,&icol);CHKERRQ(ierr); 22932bb1f2dSLisandro Dalcin ierr = ISDestroy(&iscol_local);CHKERRQ(ierr); 230ca3fa75bSLois Curfman McInnes *B = newmat; 231ca3fa75bSLois Curfman McInnes PetscFunctionReturn(0); 232ca3fa75bSLois Curfman McInnes } 233ca3fa75bSLois Curfman McInnes 2344a2ae208SSatish Balay #undef __FUNCT__ 2358c778c55SBarry Smith #define __FUNCT__ "MatDenseRestoreArray_MPIDense" 2368c778c55SBarry Smith PetscErrorCode MatDenseRestoreArray_MPIDense(Mat A,PetscScalar *array[]) 237ff14e315SSatish Balay { 23873a71a0fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 23973a71a0fSBarry Smith PetscErrorCode ierr; 24073a71a0fSBarry Smith 2413a40ed3dSBarry Smith PetscFunctionBegin; 2428c778c55SBarry Smith ierr = MatDenseRestoreArray(a->A,array);CHKERRQ(ierr); 2433a40ed3dSBarry Smith PetscFunctionReturn(0); 244ff14e315SSatish Balay } 245ff14e315SSatish Balay 2464a2ae208SSatish Balay #undef __FUNCT__ 2474a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIDense" 248dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode) 2498965ea79SLois Curfman McInnes { 25039ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 251ce94432eSBarry Smith MPI_Comm comm; 252dfbe8321SBarry Smith PetscErrorCode ierr; 25313f74950SBarry Smith PetscInt nstash,reallocs; 2548965ea79SLois Curfman McInnes InsertMode addv; 2558965ea79SLois Curfman McInnes 2563a40ed3dSBarry Smith PetscFunctionBegin; 257ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)mat,&comm);CHKERRQ(ierr); 2588965ea79SLois Curfman McInnes /* make sure all processors are either in INSERTMODE or ADDMODE */ 259c3aae356SJed Brown ierr = MPI_Allreduce((PetscEnum*)&mat->insertmode,(PetscEnum*)&addv,1,MPIU_ENUM,MPI_BOR,comm);CHKERRQ(ierr); 260ce94432eSBarry Smith if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ARG_WRONGSTATE,"Cannot mix adds/inserts on different procs"); 261e0fa3b82SLois Curfman McInnes mat->insertmode = addv; /* in case this processor had no cache */ 2628965ea79SLois Curfman McInnes 263d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 2648798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 265ae15b995SBarry Smith ierr = PetscInfo2(mdn->A,"Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 2663a40ed3dSBarry Smith PetscFunctionReturn(0); 2678965ea79SLois Curfman McInnes } 2688965ea79SLois Curfman McInnes 2694a2ae208SSatish Balay #undef __FUNCT__ 2704a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIDense" 271dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode) 2728965ea79SLois Curfman McInnes { 27339ddd567SLois Curfman McInnes Mat_MPIDense *mdn=(Mat_MPIDense*)mat->data; 2746849ba73SBarry Smith PetscErrorCode ierr; 27513f74950SBarry Smith PetscInt i,*row,*col,flg,j,rstart,ncols; 27613f74950SBarry Smith PetscMPIInt n; 27787828ca2SBarry Smith PetscScalar *val; 2788965ea79SLois Curfman McInnes 2793a40ed3dSBarry Smith PetscFunctionBegin; 2808965ea79SLois Curfman McInnes /* wait on receives */ 2817ef1d9bdSSatish Balay while (1) { 2828798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 2837ef1d9bdSSatish Balay if (!flg) break; 2848965ea79SLois Curfman McInnes 2857ef1d9bdSSatish Balay for (i=0; i<n;) { 2867ef1d9bdSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 2872205254eSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 2882205254eSKarl Rupp if (row[j] != rstart) break; 2892205254eSKarl Rupp } 2907ef1d9bdSSatish Balay if (j < n) ncols = j-i; 2917ef1d9bdSSatish Balay else ncols = n-i; 2927ef1d9bdSSatish Balay /* Now assemble all these values with a single function call */ 293*4b4eb8d3SJed Brown ierr = MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr); 2947ef1d9bdSSatish Balay i = j; 2958965ea79SLois Curfman McInnes } 2967ef1d9bdSSatish Balay } 2978798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 2988965ea79SLois Curfman McInnes 29939ddd567SLois Curfman McInnes ierr = MatAssemblyBegin(mdn->A,mode);CHKERRQ(ierr); 30039ddd567SLois Curfman McInnes ierr = MatAssemblyEnd(mdn->A,mode);CHKERRQ(ierr); 3018965ea79SLois Curfman McInnes 3026d4a8577SBarry Smith if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 30339ddd567SLois Curfman McInnes ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 3048965ea79SLois Curfman McInnes } 3053a40ed3dSBarry Smith PetscFunctionReturn(0); 3068965ea79SLois Curfman McInnes } 3078965ea79SLois Curfman McInnes 3084a2ae208SSatish Balay #undef __FUNCT__ 3094a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIDense" 310dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIDense(Mat A) 3118965ea79SLois Curfman McInnes { 312dfbe8321SBarry Smith PetscErrorCode ierr; 31339ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 3143a40ed3dSBarry Smith 3153a40ed3dSBarry Smith PetscFunctionBegin; 3163a40ed3dSBarry Smith ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 3173a40ed3dSBarry Smith PetscFunctionReturn(0); 3188965ea79SLois Curfman McInnes } 3198965ea79SLois Curfman McInnes 3208965ea79SLois Curfman McInnes /* the code does not do the diagonal entries correctly unless the 3218965ea79SLois Curfman McInnes matrix is square and the column and row owerships are identical. 3228965ea79SLois Curfman McInnes This is a BUG. The only way to fix it seems to be to access 3233501a2bdSLois Curfman McInnes mdn->A and mdn->B directly and not through the MatZeroRows() 3248965ea79SLois Curfman McInnes routine. 3258965ea79SLois Curfman McInnes */ 3264a2ae208SSatish Balay #undef __FUNCT__ 3274a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIDense" 3282b40b63fSBarry Smith PetscErrorCode MatZeroRows_MPIDense(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 3298965ea79SLois Curfman McInnes { 33039ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 3316849ba73SBarry Smith PetscErrorCode ierr; 332d0f46423SBarry Smith PetscInt i,*owners = A->rmap->range; 33376ec1555SBarry Smith PetscInt *sizes,j,idx,nsends; 33413f74950SBarry Smith PetscInt nmax,*svalues,*starts,*owner,nrecvs; 3357adad957SLisandro Dalcin PetscInt *rvalues,tag = ((PetscObject)A)->tag,count,base,slen,*source; 33613f74950SBarry Smith PetscInt *lens,*lrows,*values; 33713f74950SBarry Smith PetscMPIInt n,imdex,rank = l->rank,size = l->size; 338ce94432eSBarry Smith MPI_Comm comm; 3398965ea79SLois Curfman McInnes MPI_Request *send_waits,*recv_waits; 3408965ea79SLois Curfman McInnes MPI_Status recv_status,*send_status; 341ace3abfcSBarry Smith PetscBool found; 34297b48c8fSBarry Smith const PetscScalar *xx; 34397b48c8fSBarry Smith PetscScalar *bb; 3448965ea79SLois Curfman McInnes 3453a40ed3dSBarry Smith PetscFunctionBegin; 346ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 347ce94432eSBarry Smith if (A->rmap->N != A->cmap->N) SETERRQ(comm,PETSC_ERR_SUP,"Only handles square matrices"); 348b9679d65SBarry Smith if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only handles matrices with identical column and row ownership"); 3498965ea79SLois Curfman McInnes /* first count number of contributors to each processor */ 350f628708eSJed Brown ierr = PetscCalloc1(2*size,&sizes);CHKERRQ(ierr); 351037dbc42SBarry Smith ierr = PetscMalloc1(N+1,&owner);CHKERRQ(ierr); /* see note*/ 3528965ea79SLois Curfman McInnes for (i=0; i<N; i++) { 3538965ea79SLois Curfman McInnes idx = rows[i]; 35435d8aa7fSBarry Smith found = PETSC_FALSE; 3558965ea79SLois Curfman McInnes for (j=0; j<size; j++) { 3568965ea79SLois Curfman McInnes if (idx >= owners[j] && idx < owners[j+1]) { 35776ec1555SBarry Smith sizes[2*j]++; sizes[2*j+1] = 1; owner[i] = j; found = PETSC_TRUE; break; 3588965ea79SLois Curfman McInnes } 3598965ea79SLois Curfman McInnes } 360e32f2f54SBarry Smith if (!found) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Index out of range"); 3618965ea79SLois Curfman McInnes } 3622205254eSKarl Rupp nsends = 0; 36376ec1555SBarry Smith for (i=0; i<size; i++) nsends += sizes[2*i+1]; 3648965ea79SLois Curfman McInnes 3658965ea79SLois Curfman McInnes /* inform other processors of number of messages and max length*/ 36676ec1555SBarry Smith ierr = PetscMaxSum(comm,sizes,&nmax,&nrecvs);CHKERRQ(ierr); 3678965ea79SLois Curfman McInnes 3688965ea79SLois Curfman McInnes /* post receives: */ 369785e854fSJed Brown ierr = PetscMalloc1((nrecvs+1)*(nmax+1),&rvalues);CHKERRQ(ierr); 370785e854fSJed Brown ierr = PetscMalloc1((nrecvs+1),&recv_waits);CHKERRQ(ierr); 3718965ea79SLois Curfman McInnes for (i=0; i<nrecvs; i++) { 37213f74950SBarry Smith ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 3738965ea79SLois Curfman McInnes } 3748965ea79SLois Curfman McInnes 3758965ea79SLois Curfman McInnes /* do sends: 3768965ea79SLois Curfman McInnes 1) starts[i] gives the starting index in svalues for stuff going to 3778965ea79SLois Curfman McInnes the ith processor 3788965ea79SLois Curfman McInnes */ 379785e854fSJed Brown ierr = PetscMalloc1((N+1),&svalues);CHKERRQ(ierr); 380785e854fSJed Brown ierr = PetscMalloc1((nsends+1),&send_waits);CHKERRQ(ierr); 381785e854fSJed Brown ierr = PetscMalloc1((size+1),&starts);CHKERRQ(ierr); 3828965ea79SLois Curfman McInnes 3838965ea79SLois Curfman McInnes starts[0] = 0; 38476ec1555SBarry Smith for (i=1; i<size; i++) starts[i] = starts[i-1] + sizes[2*i-2]; 3852205254eSKarl Rupp for (i=0; i<N; i++) svalues[starts[owner[i]]++] = rows[i]; 3862205254eSKarl Rupp 3872205254eSKarl Rupp starts[0] = 0; 38876ec1555SBarry Smith for (i=1; i<size+1; i++) starts[i] = starts[i-1] + sizes[2*i-2]; 3898965ea79SLois Curfman McInnes count = 0; 3908965ea79SLois Curfman McInnes for (i=0; i<size; i++) { 39176ec1555SBarry Smith if (sizes[2*i+1]) { 39276ec1555SBarry Smith ierr = MPI_Isend(svalues+starts[i],sizes[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 3938965ea79SLois Curfman McInnes } 3948965ea79SLois Curfman McInnes } 395606d414cSSatish Balay ierr = PetscFree(starts);CHKERRQ(ierr); 3968965ea79SLois Curfman McInnes 3978965ea79SLois Curfman McInnes base = owners[rank]; 3988965ea79SLois Curfman McInnes 3998965ea79SLois Curfman McInnes /* wait on receives */ 400dcca6d9dSJed Brown ierr = PetscMalloc2(nrecvs,&lens,nrecvs,&source);CHKERRQ(ierr); 40174ed9c26SBarry Smith count = nrecvs; 40274ed9c26SBarry Smith slen = 0; 4038965ea79SLois Curfman McInnes while (count) { 404ca161407SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 4058965ea79SLois Curfman McInnes /* unpack receives into our local space */ 40613f74950SBarry Smith ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr); 4072205254eSKarl Rupp 4088965ea79SLois Curfman McInnes source[imdex] = recv_status.MPI_SOURCE; 4098965ea79SLois Curfman McInnes lens[imdex] = n; 4108965ea79SLois Curfman McInnes slen += n; 4118965ea79SLois Curfman McInnes count--; 4128965ea79SLois Curfman McInnes } 413606d414cSSatish Balay ierr = PetscFree(recv_waits);CHKERRQ(ierr); 4148965ea79SLois Curfman McInnes 4158965ea79SLois Curfman McInnes /* move the data into the send scatter */ 416785e854fSJed Brown ierr = PetscMalloc1((slen+1),&lrows);CHKERRQ(ierr); 4178965ea79SLois Curfman McInnes count = 0; 4188965ea79SLois Curfman McInnes for (i=0; i<nrecvs; i++) { 4198965ea79SLois Curfman McInnes values = rvalues + i*nmax; 4208965ea79SLois Curfman McInnes for (j=0; j<lens[i]; j++) { 4218965ea79SLois Curfman McInnes lrows[count++] = values[j] - base; 4228965ea79SLois Curfman McInnes } 4238965ea79SLois Curfman McInnes } 424606d414cSSatish Balay ierr = PetscFree(rvalues);CHKERRQ(ierr); 42574ed9c26SBarry Smith ierr = PetscFree2(lens,source);CHKERRQ(ierr); 426606d414cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 42776ec1555SBarry Smith ierr = PetscFree(sizes);CHKERRQ(ierr); 4288965ea79SLois Curfman McInnes 42997b48c8fSBarry Smith /* fix right hand side if needed */ 43097b48c8fSBarry Smith if (x && b) { 43197b48c8fSBarry Smith ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr); 43297b48c8fSBarry Smith ierr = VecGetArray(b,&bb);CHKERRQ(ierr); 43397b48c8fSBarry Smith for (i=0; i<slen; i++) { 43497b48c8fSBarry Smith bb[lrows[i]] = diag*xx[lrows[i]]; 43597b48c8fSBarry Smith } 43697b48c8fSBarry Smith ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr); 43797b48c8fSBarry Smith ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr); 43897b48c8fSBarry Smith } 43997b48c8fSBarry Smith 4408965ea79SLois Curfman McInnes /* actually zap the local rows */ 441b9679d65SBarry Smith ierr = MatZeroRows(l->A,slen,lrows,0.0,0,0);CHKERRQ(ierr); 442e2eb51b1SBarry Smith if (diag != 0.0) { 443b9679d65SBarry Smith Mat_SeqDense *ll = (Mat_SeqDense*)l->A->data; 444b9679d65SBarry Smith PetscInt m = ll->lda, i; 445b9679d65SBarry Smith 446b9679d65SBarry Smith for (i=0; i<slen; i++) { 447b9679d65SBarry Smith ll->v[lrows[i] + m*(A->cmap->rstart + lrows[i])] = diag; 448b9679d65SBarry Smith } 449b9679d65SBarry Smith } 450606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 4518965ea79SLois Curfman McInnes 4528965ea79SLois Curfman McInnes /* wait on sends */ 4538965ea79SLois Curfman McInnes if (nsends) { 454785e854fSJed Brown ierr = PetscMalloc1(nsends,&send_status);CHKERRQ(ierr); 455ca161407SBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 456606d414cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 4578965ea79SLois Curfman McInnes } 458606d414cSSatish Balay ierr = PetscFree(send_waits);CHKERRQ(ierr); 459606d414cSSatish Balay ierr = PetscFree(svalues);CHKERRQ(ierr); 4603a40ed3dSBarry Smith PetscFunctionReturn(0); 4618965ea79SLois Curfman McInnes } 4628965ea79SLois Curfman McInnes 4634a2ae208SSatish Balay #undef __FUNCT__ 4644a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIDense" 465dfbe8321SBarry Smith PetscErrorCode MatMult_MPIDense(Mat mat,Vec xx,Vec yy) 4668965ea79SLois Curfman McInnes { 46739ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 468dfbe8321SBarry Smith PetscErrorCode ierr; 469c456f294SBarry Smith 4703a40ed3dSBarry Smith PetscFunctionBegin; 471ca9f406cSSatish Balay ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 472ca9f406cSSatish Balay ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 47344cd7ae7SLois Curfman McInnes ierr = MatMult_SeqDense(mdn->A,mdn->lvec,yy);CHKERRQ(ierr); 4743a40ed3dSBarry Smith PetscFunctionReturn(0); 4758965ea79SLois Curfman McInnes } 4768965ea79SLois Curfman McInnes 4774a2ae208SSatish Balay #undef __FUNCT__ 4784a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIDense" 479dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz) 4808965ea79SLois Curfman McInnes { 48139ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 482dfbe8321SBarry Smith PetscErrorCode ierr; 483c456f294SBarry Smith 4843a40ed3dSBarry Smith PetscFunctionBegin; 485ca9f406cSSatish Balay ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 486ca9f406cSSatish Balay ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 48744cd7ae7SLois Curfman McInnes ierr = MatMultAdd_SeqDense(mdn->A,mdn->lvec,yy,zz);CHKERRQ(ierr); 4883a40ed3dSBarry Smith PetscFunctionReturn(0); 4898965ea79SLois Curfman McInnes } 4908965ea79SLois Curfman McInnes 4914a2ae208SSatish Balay #undef __FUNCT__ 4924a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIDense" 493dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIDense(Mat A,Vec xx,Vec yy) 494096963f5SLois Curfman McInnes { 495096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 496dfbe8321SBarry Smith PetscErrorCode ierr; 49787828ca2SBarry Smith PetscScalar zero = 0.0; 498096963f5SLois Curfman McInnes 4993a40ed3dSBarry Smith PetscFunctionBegin; 5002dcb1b2aSMatthew Knepley ierr = VecSet(yy,zero);CHKERRQ(ierr); 5017c922b88SBarry Smith ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr); 502ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 503ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 5043a40ed3dSBarry Smith PetscFunctionReturn(0); 505096963f5SLois Curfman McInnes } 506096963f5SLois Curfman McInnes 5074a2ae208SSatish Balay #undef __FUNCT__ 5084a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIDense" 509dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz) 510096963f5SLois Curfman McInnes { 511096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 512dfbe8321SBarry Smith PetscErrorCode ierr; 513096963f5SLois Curfman McInnes 5143a40ed3dSBarry Smith PetscFunctionBegin; 5153501a2bdSLois Curfman McInnes ierr = VecCopy(yy,zz);CHKERRQ(ierr); 5167c922b88SBarry Smith ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr); 517ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 518ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 5193a40ed3dSBarry Smith PetscFunctionReturn(0); 520096963f5SLois Curfman McInnes } 521096963f5SLois Curfman McInnes 5224a2ae208SSatish Balay #undef __FUNCT__ 5234a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIDense" 524dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIDense(Mat A,Vec v) 5258965ea79SLois Curfman McInnes { 52639ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 527096963f5SLois Curfman McInnes Mat_SeqDense *aloc = (Mat_SeqDense*)a->A->data; 528dfbe8321SBarry Smith PetscErrorCode ierr; 529d0f46423SBarry Smith PetscInt len,i,n,m = A->rmap->n,radd; 53087828ca2SBarry Smith PetscScalar *x,zero = 0.0; 531ed3cc1f0SBarry Smith 5323a40ed3dSBarry Smith PetscFunctionBegin; 5332dcb1b2aSMatthew Knepley ierr = VecSet(v,zero);CHKERRQ(ierr); 5341ebc52fbSHong Zhang ierr = VecGetArray(v,&x);CHKERRQ(ierr); 535096963f5SLois Curfman McInnes ierr = VecGetSize(v,&n);CHKERRQ(ierr); 536e32f2f54SBarry Smith if (n != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec"); 537d0f46423SBarry Smith len = PetscMin(a->A->rmap->n,a->A->cmap->n); 538d0f46423SBarry Smith radd = A->rmap->rstart*m; 53944cd7ae7SLois Curfman McInnes for (i=0; i<len; i++) { 540096963f5SLois Curfman McInnes x[i] = aloc->v[radd + i*m + i]; 541096963f5SLois Curfman McInnes } 5421ebc52fbSHong Zhang ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 5433a40ed3dSBarry Smith PetscFunctionReturn(0); 5448965ea79SLois Curfman McInnes } 5458965ea79SLois Curfman McInnes 5464a2ae208SSatish Balay #undef __FUNCT__ 5474a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIDense" 548dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIDense(Mat mat) 5498965ea79SLois Curfman McInnes { 5503501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 551dfbe8321SBarry Smith PetscErrorCode ierr; 552ed3cc1f0SBarry Smith 5533a40ed3dSBarry Smith PetscFunctionBegin; 554aa482453SBarry Smith #if defined(PETSC_USE_LOG) 555d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D, Cols=%D",mat->rmap->N,mat->cmap->N); 5568965ea79SLois Curfman McInnes #endif 5578798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 5586bf464f9SBarry Smith ierr = MatDestroy(&mdn->A);CHKERRQ(ierr); 5596bf464f9SBarry Smith ierr = VecDestroy(&mdn->lvec);CHKERRQ(ierr); 5606bf464f9SBarry Smith ierr = VecScatterDestroy(&mdn->Mvctx);CHKERRQ(ierr); 56101b82886SBarry Smith 562bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 563dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 5648baccfbdSHong Zhang 5658baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",NULL);CHKERRQ(ierr); 5668baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",NULL);CHKERRQ(ierr); 5678baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 5688baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",NULL);CHKERRQ(ierr); 5698baccfbdSHong Zhang #endif 570bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C",NULL);CHKERRQ(ierr); 571bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",NULL);CHKERRQ(ierr); 572bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMult_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 573bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 574bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 5758baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMult_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 5768baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultSymbolic_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 5778baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultNumeric_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 5783a40ed3dSBarry Smith PetscFunctionReturn(0); 5798965ea79SLois Curfman McInnes } 58039ddd567SLois Curfman McInnes 5814a2ae208SSatish Balay #undef __FUNCT__ 5824a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense_Binary" 5836849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_Binary(Mat mat,PetscViewer viewer) 5848965ea79SLois Curfman McInnes { 58539ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 586dfbe8321SBarry Smith PetscErrorCode ierr; 587aa05aa95SBarry Smith PetscViewerFormat format; 588aa05aa95SBarry Smith int fd; 589d0f46423SBarry Smith PetscInt header[4],mmax,N = mat->cmap->N,i,j,m,k; 590aa05aa95SBarry Smith PetscMPIInt rank,tag = ((PetscObject)viewer)->tag,size; 591578230a0SSatish Balay PetscScalar *work,*v,*vv; 592aa05aa95SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)mdn->A->data; 5937056b6fcSBarry Smith 5943a40ed3dSBarry Smith PetscFunctionBegin; 59539ddd567SLois Curfman McInnes if (mdn->size == 1) { 59639ddd567SLois Curfman McInnes ierr = MatView(mdn->A,viewer);CHKERRQ(ierr); 597aa05aa95SBarry Smith } else { 598aa05aa95SBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 599ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr); 600ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&size);CHKERRQ(ierr); 601aa05aa95SBarry Smith 602aa05aa95SBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 603f4403165SShri Abhyankar if (format == PETSC_VIEWER_NATIVE) { 604aa05aa95SBarry Smith 605aa05aa95SBarry Smith if (!rank) { 606aa05aa95SBarry Smith /* store the matrix as a dense matrix */ 6070700a824SBarry Smith header[0] = MAT_FILE_CLASSID; 608d0f46423SBarry Smith header[1] = mat->rmap->N; 609aa05aa95SBarry Smith header[2] = N; 610aa05aa95SBarry Smith header[3] = MATRIX_BINARY_FORMAT_DENSE; 611aa05aa95SBarry Smith ierr = PetscBinaryWrite(fd,header,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 612aa05aa95SBarry Smith 613aa05aa95SBarry Smith /* get largest work array needed for transposing array */ 614d0f46423SBarry Smith mmax = mat->rmap->n; 615aa05aa95SBarry Smith for (i=1; i<size; i++) { 616d0f46423SBarry Smith mmax = PetscMax(mmax,mat->rmap->range[i+1] - mat->rmap->range[i]); 6178965ea79SLois Curfman McInnes } 618785e854fSJed Brown ierr = PetscMalloc1(mmax*N,&work);CHKERRQ(ierr); 619aa05aa95SBarry Smith 620aa05aa95SBarry Smith /* write out local array, by rows */ 621d0f46423SBarry Smith m = mat->rmap->n; 622aa05aa95SBarry Smith v = a->v; 623aa05aa95SBarry Smith for (j=0; j<N; j++) { 624aa05aa95SBarry Smith for (i=0; i<m; i++) { 625578230a0SSatish Balay work[j + i*N] = *v++; 626aa05aa95SBarry Smith } 627aa05aa95SBarry Smith } 628aa05aa95SBarry Smith ierr = PetscBinaryWrite(fd,work,m*N,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr); 629aa05aa95SBarry Smith /* get largest work array to receive messages from other processes, excludes process zero */ 630aa05aa95SBarry Smith mmax = 0; 631aa05aa95SBarry Smith for (i=1; i<size; i++) { 632d0f46423SBarry Smith mmax = PetscMax(mmax,mat->rmap->range[i+1] - mat->rmap->range[i]); 633aa05aa95SBarry Smith } 634785e854fSJed Brown ierr = PetscMalloc1(mmax*N,&vv);CHKERRQ(ierr); 635aa05aa95SBarry Smith for (k = 1; k < size; k++) { 636f8009846SMatthew Knepley v = vv; 637d0f46423SBarry Smith m = mat->rmap->range[k+1] - mat->rmap->range[k]; 638ce94432eSBarry Smith ierr = MPIULong_Recv(v,m*N,MPIU_SCALAR,k,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 639aa05aa95SBarry Smith 640aa05aa95SBarry Smith for (j = 0; j < N; j++) { 641aa05aa95SBarry Smith for (i = 0; i < m; i++) { 642578230a0SSatish Balay work[j + i*N] = *v++; 643aa05aa95SBarry Smith } 644aa05aa95SBarry Smith } 645aa05aa95SBarry Smith ierr = PetscBinaryWrite(fd,work,m*N,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr); 646aa05aa95SBarry Smith } 647aa05aa95SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 648578230a0SSatish Balay ierr = PetscFree(vv);CHKERRQ(ierr); 649aa05aa95SBarry Smith } else { 650ce94432eSBarry Smith ierr = MPIULong_Send(a->v,mat->rmap->n*mat->cmap->N,MPIU_SCALAR,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 651aa05aa95SBarry Smith } 652eb3f98d2SBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"To store a parallel dense matrix you must first call PetscViewerSetFormat(viewer,PETSC_VIEWER_NATIVE)"); 653aa05aa95SBarry Smith } 6543a40ed3dSBarry Smith PetscFunctionReturn(0); 6558965ea79SLois Curfman McInnes } 6568965ea79SLois Curfman McInnes 6577da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqDense(Mat,PetscViewer); 6589804daf3SBarry Smith #include <petscdraw.h> 6594a2ae208SSatish Balay #undef __FUNCT__ 6604a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense_ASCIIorDraworSocket" 6616849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 6628965ea79SLois Curfman McInnes { 66339ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 664dfbe8321SBarry Smith PetscErrorCode ierr; 6657da1fb6eSBarry Smith PetscMPIInt rank = mdn->rank; 66619fd82e9SBarry Smith PetscViewerType vtype; 667ace3abfcSBarry Smith PetscBool iascii,isdraw; 668b0a32e0cSBarry Smith PetscViewer sviewer; 669f3ef73ceSBarry Smith PetscViewerFormat format; 6708965ea79SLois Curfman McInnes 6713a40ed3dSBarry Smith PetscFunctionBegin; 672251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 673251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 67432077d6dSBarry Smith if (iascii) { 675b0a32e0cSBarry Smith ierr = PetscViewerGetType(viewer,&vtype);CHKERRQ(ierr); 676b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 677456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 6784e220ebcSLois Curfman McInnes MatInfo info; 679888f2ed8SSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 6807b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);CHKERRQ(ierr); 6817b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer," [%d] local rows %D nz %D nz alloced %D mem %D \n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory);CHKERRQ(ierr); 682b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 6837b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);CHKERRQ(ierr); 6845d00a290SHong Zhang ierr = VecScatterView(mdn->Mvctx,viewer);CHKERRQ(ierr); 6853a40ed3dSBarry Smith PetscFunctionReturn(0); 686fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 6873a40ed3dSBarry Smith PetscFunctionReturn(0); 6888965ea79SLois Curfman McInnes } 689f1af5d2fSBarry Smith } else if (isdraw) { 690b0a32e0cSBarry Smith PetscDraw draw; 691ace3abfcSBarry Smith PetscBool isnull; 692f1af5d2fSBarry Smith 693b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 694b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 695f1af5d2fSBarry Smith if (isnull) PetscFunctionReturn(0); 696f1af5d2fSBarry Smith } 69777ed5343SBarry Smith 6987da1fb6eSBarry Smith { 6998965ea79SLois Curfman McInnes /* assemble the entire matrix onto first processor. */ 7008965ea79SLois Curfman McInnes Mat A; 701d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,m,row,i,nz; 702ba8c8a56SBarry Smith PetscInt *cols; 703ba8c8a56SBarry Smith PetscScalar *vals; 7048965ea79SLois Curfman McInnes 705ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr); 7068965ea79SLois Curfman McInnes if (!rank) { 707f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 7083a40ed3dSBarry Smith } else { 709f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 7108965ea79SLois Curfman McInnes } 7117adad957SLisandro Dalcin /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */ 712878740d9SKris Buschelman ierr = MatSetType(A,MATMPIDENSE);CHKERRQ(ierr); 7130298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(A,NULL);CHKERRQ(ierr); 7143bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr); 7158965ea79SLois Curfman McInnes 71639ddd567SLois Curfman McInnes /* Copy the matrix ... This isn't the most efficient means, 71739ddd567SLois Curfman McInnes but it's quick for now */ 71851022da4SBarry Smith A->insertmode = INSERT_VALUES; 7192205254eSKarl Rupp 7202205254eSKarl Rupp row = mat->rmap->rstart; 7212205254eSKarl Rupp m = mdn->A->rmap->n; 7228965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 723ba8c8a56SBarry Smith ierr = MatGetRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 724ba8c8a56SBarry Smith ierr = MatSetValues_MPIDense(A,1,&row,nz,cols,vals,INSERT_VALUES);CHKERRQ(ierr); 725ba8c8a56SBarry Smith ierr = MatRestoreRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 72639ddd567SLois Curfman McInnes row++; 7278965ea79SLois Curfman McInnes } 7288965ea79SLois Curfman McInnes 7296d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 7306d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 731b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 732b9b97703SBarry Smith if (!rank) { 7337da1fb6eSBarry Smith ierr = MatView_SeqDense(((Mat_MPIDense*)(A->data))->A,sviewer);CHKERRQ(ierr); 7348965ea79SLois Curfman McInnes } 735b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 736b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 7376bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 7388965ea79SLois Curfman McInnes } 7393a40ed3dSBarry Smith PetscFunctionReturn(0); 7408965ea79SLois Curfman McInnes } 7418965ea79SLois Curfman McInnes 7424a2ae208SSatish Balay #undef __FUNCT__ 7434a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense" 744dfbe8321SBarry Smith PetscErrorCode MatView_MPIDense(Mat mat,PetscViewer viewer) 7458965ea79SLois Curfman McInnes { 746dfbe8321SBarry Smith PetscErrorCode ierr; 747ace3abfcSBarry Smith PetscBool iascii,isbinary,isdraw,issocket; 7488965ea79SLois Curfman McInnes 749433994e6SBarry Smith PetscFunctionBegin; 750251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 751251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 752251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 753251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 7540f5bd95cSBarry Smith 75532077d6dSBarry Smith if (iascii || issocket || isdraw) { 756f1af5d2fSBarry Smith ierr = MatView_MPIDense_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 7570f5bd95cSBarry Smith } else if (isbinary) { 7583a40ed3dSBarry Smith ierr = MatView_MPIDense_Binary(mat,viewer);CHKERRQ(ierr); 75911aeaf0aSBarry Smith } 7603a40ed3dSBarry Smith PetscFunctionReturn(0); 7618965ea79SLois Curfman McInnes } 7628965ea79SLois Curfman McInnes 7634a2ae208SSatish Balay #undef __FUNCT__ 7644a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIDense" 765dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info) 7668965ea79SLois Curfman McInnes { 7673501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 7683501a2bdSLois Curfman McInnes Mat mdn = mat->A; 769dfbe8321SBarry Smith PetscErrorCode ierr; 770329f5518SBarry Smith PetscReal isend[5],irecv[5]; 7718965ea79SLois Curfman McInnes 7723a40ed3dSBarry Smith PetscFunctionBegin; 7734e220ebcSLois Curfman McInnes info->block_size = 1.0; 7742205254eSKarl Rupp 7754e220ebcSLois Curfman McInnes ierr = MatGetInfo(mdn,MAT_LOCAL,info);CHKERRQ(ierr); 7762205254eSKarl Rupp 7774e220ebcSLois Curfman McInnes isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 7784e220ebcSLois Curfman McInnes isend[3] = info->memory; isend[4] = info->mallocs; 7798965ea79SLois Curfman McInnes if (flag == MAT_LOCAL) { 7804e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 7814e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 7824e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 7834e220ebcSLois Curfman McInnes info->memory = isend[3]; 7844e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 7858965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 786ce94432eSBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 7872205254eSKarl Rupp 7884e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7894e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7904e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7914e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7924e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7938965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 794ce94432eSBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 7952205254eSKarl Rupp 7964e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7974e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7984e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7994e220ebcSLois Curfman McInnes info->memory = irecv[3]; 8004e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 8018965ea79SLois Curfman McInnes } 8024e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 8034e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 8044e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 8053a40ed3dSBarry Smith PetscFunctionReturn(0); 8068965ea79SLois Curfman McInnes } 8078965ea79SLois Curfman McInnes 8084a2ae208SSatish Balay #undef __FUNCT__ 8094a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIDense" 810ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIDense(Mat A,MatOption op,PetscBool flg) 8118965ea79SLois Curfman McInnes { 81239ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 813dfbe8321SBarry Smith PetscErrorCode ierr; 8148965ea79SLois Curfman McInnes 8153a40ed3dSBarry Smith PetscFunctionBegin; 81612c028f9SKris Buschelman switch (op) { 817512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 81812c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 81912c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 8204e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 82112c028f9SKris Buschelman break; 82212c028f9SKris Buschelman case MAT_ROW_ORIENTED: 8234e0d8c25SBarry Smith a->roworiented = flg; 8242205254eSKarl Rupp 8254e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 82612c028f9SKris Buschelman break; 8274e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 82813fa8e87SLisandro Dalcin case MAT_KEEP_NONZERO_PATTERN: 82912c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 830290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 83112c028f9SKris Buschelman break; 83212c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 8334e0d8c25SBarry Smith a->donotstash = flg; 83412c028f9SKris Buschelman break; 83577e54ba9SKris Buschelman case MAT_SYMMETRIC: 83677e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 8379a4540c5SBarry Smith case MAT_HERMITIAN: 8389a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 839600fe468SBarry Smith case MAT_IGNORE_LOWER_TRIANGULAR: 840290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 84177e54ba9SKris Buschelman break; 84212c028f9SKris Buschelman default: 843e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %s",MatOptions[op]); 8443a40ed3dSBarry Smith } 8453a40ed3dSBarry Smith PetscFunctionReturn(0); 8468965ea79SLois Curfman McInnes } 8478965ea79SLois Curfman McInnes 8488965ea79SLois Curfman McInnes 8494a2ae208SSatish Balay #undef __FUNCT__ 8504a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIDense" 851dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIDense(Mat A,Vec ll,Vec rr) 8525b2fa520SLois Curfman McInnes { 8535b2fa520SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 8545b2fa520SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)mdn->A->data; 85587828ca2SBarry Smith PetscScalar *l,*r,x,*v; 856dfbe8321SBarry Smith PetscErrorCode ierr; 857d0f46423SBarry Smith PetscInt i,j,s2a,s3a,s2,s3,m=mdn->A->rmap->n,n=mdn->A->cmap->n; 8585b2fa520SLois Curfman McInnes 8595b2fa520SLois Curfman McInnes PetscFunctionBegin; 86072d926a5SLois Curfman McInnes ierr = MatGetLocalSize(A,&s2,&s3);CHKERRQ(ierr); 8615b2fa520SLois Curfman McInnes if (ll) { 86272d926a5SLois Curfman McInnes ierr = VecGetLocalSize(ll,&s2a);CHKERRQ(ierr); 863e32f2f54SBarry Smith if (s2a != s2) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vector non-conforming local size, %d != %d.", s2a, s2); 8641ebc52fbSHong Zhang ierr = VecGetArray(ll,&l);CHKERRQ(ierr); 8655b2fa520SLois Curfman McInnes for (i=0; i<m; i++) { 8665b2fa520SLois Curfman McInnes x = l[i]; 8675b2fa520SLois Curfman McInnes v = mat->v + i; 8685b2fa520SLois Curfman McInnes for (j=0; j<n; j++) { (*v) *= x; v+= m;} 8695b2fa520SLois Curfman McInnes } 8701ebc52fbSHong Zhang ierr = VecRestoreArray(ll,&l);CHKERRQ(ierr); 871efee365bSSatish Balay ierr = PetscLogFlops(n*m);CHKERRQ(ierr); 8725b2fa520SLois Curfman McInnes } 8735b2fa520SLois Curfman McInnes if (rr) { 874175be7b4SMatthew Knepley ierr = VecGetLocalSize(rr,&s3a);CHKERRQ(ierr); 875e32f2f54SBarry Smith if (s3a != s3) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vec non-conforming local size, %d != %d.", s3a, s3); 876ca9f406cSSatish Balay ierr = VecScatterBegin(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 877ca9f406cSSatish Balay ierr = VecScatterEnd(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 8781ebc52fbSHong Zhang ierr = VecGetArray(mdn->lvec,&r);CHKERRQ(ierr); 8795b2fa520SLois Curfman McInnes for (i=0; i<n; i++) { 8805b2fa520SLois Curfman McInnes x = r[i]; 8815b2fa520SLois Curfman McInnes v = mat->v + i*m; 8822205254eSKarl Rupp for (j=0; j<m; j++) (*v++) *= x; 8835b2fa520SLois Curfman McInnes } 8841ebc52fbSHong Zhang ierr = VecRestoreArray(mdn->lvec,&r);CHKERRQ(ierr); 885efee365bSSatish Balay ierr = PetscLogFlops(n*m);CHKERRQ(ierr); 8865b2fa520SLois Curfman McInnes } 8875b2fa520SLois Curfman McInnes PetscFunctionReturn(0); 8885b2fa520SLois Curfman McInnes } 8895b2fa520SLois Curfman McInnes 8904a2ae208SSatish Balay #undef __FUNCT__ 8914a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIDense" 892dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIDense(Mat A,NormType type,PetscReal *nrm) 893096963f5SLois Curfman McInnes { 8943501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 8953501a2bdSLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)mdn->A->data; 896dfbe8321SBarry Smith PetscErrorCode ierr; 89713f74950SBarry Smith PetscInt i,j; 898329f5518SBarry Smith PetscReal sum = 0.0; 89987828ca2SBarry Smith PetscScalar *v = mat->v; 9003501a2bdSLois Curfman McInnes 9013a40ed3dSBarry Smith PetscFunctionBegin; 9023501a2bdSLois Curfman McInnes if (mdn->size == 1) { 903064f8208SBarry Smith ierr = MatNorm(mdn->A,type,nrm);CHKERRQ(ierr); 9043501a2bdSLois Curfman McInnes } else { 9053501a2bdSLois Curfman McInnes if (type == NORM_FROBENIUS) { 906d0f46423SBarry Smith for (i=0; i<mdn->A->cmap->n*mdn->A->rmap->n; i++) { 907329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 9083501a2bdSLois Curfman McInnes } 909ce94432eSBarry Smith ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 9108f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 911dc0b31edSSatish Balay ierr = PetscLogFlops(2.0*mdn->A->cmap->n*mdn->A->rmap->n);CHKERRQ(ierr); 9123a40ed3dSBarry Smith } else if (type == NORM_1) { 913329f5518SBarry Smith PetscReal *tmp,*tmp2; 914dcca6d9dSJed Brown ierr = PetscMalloc2(A->cmap->N,&tmp,A->cmap->N,&tmp2);CHKERRQ(ierr); 91574ed9c26SBarry Smith ierr = PetscMemzero(tmp,A->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 91674ed9c26SBarry Smith ierr = PetscMemzero(tmp2,A->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 917064f8208SBarry Smith *nrm = 0.0; 9183501a2bdSLois Curfman McInnes v = mat->v; 919d0f46423SBarry Smith for (j=0; j<mdn->A->cmap->n; j++) { 920d0f46423SBarry Smith for (i=0; i<mdn->A->rmap->n; i++) { 92167e560aaSBarry Smith tmp[j] += PetscAbsScalar(*v); v++; 9223501a2bdSLois Curfman McInnes } 9233501a2bdSLois Curfman McInnes } 924ce94432eSBarry Smith ierr = MPI_Allreduce(tmp,tmp2,A->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 925d0f46423SBarry Smith for (j=0; j<A->cmap->N; j++) { 926064f8208SBarry Smith if (tmp2[j] > *nrm) *nrm = tmp2[j]; 9273501a2bdSLois Curfman McInnes } 92874ed9c26SBarry Smith ierr = PetscFree2(tmp,tmp);CHKERRQ(ierr); 929d0f46423SBarry Smith ierr = PetscLogFlops(A->cmap->n*A->rmap->n);CHKERRQ(ierr); 9303a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 931329f5518SBarry Smith PetscReal ntemp; 9323501a2bdSLois Curfman McInnes ierr = MatNorm(mdn->A,type,&ntemp);CHKERRQ(ierr); 933ce94432eSBarry Smith ierr = MPI_Allreduce(&ntemp,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 934ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"No support for two norm"); 9353501a2bdSLois Curfman McInnes } 9363a40ed3dSBarry Smith PetscFunctionReturn(0); 9373501a2bdSLois Curfman McInnes } 9383501a2bdSLois Curfman McInnes 9394a2ae208SSatish Balay #undef __FUNCT__ 9404a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPIDense" 941fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIDense(Mat A,MatReuse reuse,Mat *matout) 9423501a2bdSLois Curfman McInnes { 9433501a2bdSLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 9443501a2bdSLois Curfman McInnes Mat_SeqDense *Aloc = (Mat_SeqDense*)a->A->data; 9453501a2bdSLois Curfman McInnes Mat B; 946d0f46423SBarry Smith PetscInt M = A->rmap->N,N = A->cmap->N,m,n,*rwork,rstart = A->rmap->rstart; 9476849ba73SBarry Smith PetscErrorCode ierr; 94813f74950SBarry Smith PetscInt j,i; 94987828ca2SBarry Smith PetscScalar *v; 9503501a2bdSLois Curfman McInnes 9513a40ed3dSBarry Smith PetscFunctionBegin; 952ce94432eSBarry Smith if (reuse == MAT_REUSE_MATRIX && A == *matout && M != N) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Supports square matrix only in-place"); 953fc4dec0aSBarry Smith if (reuse == MAT_INITIAL_MATRIX || A == *matout) { 954ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 955d0f46423SBarry Smith ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr); 9567adad957SLisandro Dalcin ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr); 9570298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(B,NULL);CHKERRQ(ierr); 958fc4dec0aSBarry Smith } else { 959fc4dec0aSBarry Smith B = *matout; 960fc4dec0aSBarry Smith } 9613501a2bdSLois Curfman McInnes 962d0f46423SBarry Smith m = a->A->rmap->n; n = a->A->cmap->n; v = Aloc->v; 963785e854fSJed Brown ierr = PetscMalloc1(m,&rwork);CHKERRQ(ierr); 9643501a2bdSLois Curfman McInnes for (i=0; i<m; i++) rwork[i] = rstart + i; 9651acff37aSSatish Balay for (j=0; j<n; j++) { 9663501a2bdSLois Curfman McInnes ierr = MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES);CHKERRQ(ierr); 9673501a2bdSLois Curfman McInnes v += m; 9683501a2bdSLois Curfman McInnes } 969606d414cSSatish Balay ierr = PetscFree(rwork);CHKERRQ(ierr); 9706d4a8577SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 9716d4a8577SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 972815cbec1SBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout != A) { 9733501a2bdSLois Curfman McInnes *matout = B; 9743501a2bdSLois Curfman McInnes } else { 975eb6b5d47SBarry Smith ierr = MatHeaderMerge(A,B);CHKERRQ(ierr); 9763501a2bdSLois Curfman McInnes } 9773a40ed3dSBarry Smith PetscFunctionReturn(0); 978096963f5SLois Curfman McInnes } 979096963f5SLois Curfman McInnes 98044cd7ae7SLois Curfman McInnes 9816849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat*); 982d84338a6SBarry Smith extern PetscErrorCode MatScale_MPIDense(Mat,PetscScalar); 9838965ea79SLois Curfman McInnes 9844a2ae208SSatish Balay #undef __FUNCT__ 9854994cf47SJed Brown #define __FUNCT__ "MatSetUp_MPIDense" 9864994cf47SJed Brown PetscErrorCode MatSetUp_MPIDense(Mat A) 987273d9f13SBarry Smith { 988dfbe8321SBarry Smith PetscErrorCode ierr; 989273d9f13SBarry Smith 990273d9f13SBarry Smith PetscFunctionBegin; 991273d9f13SBarry Smith ierr = MatMPIDenseSetPreallocation(A,0);CHKERRQ(ierr); 992273d9f13SBarry Smith PetscFunctionReturn(0); 993273d9f13SBarry Smith } 994273d9f13SBarry Smith 99530716080SHong Zhang #undef __FUNCT__ 996488007eeSBarry Smith #define __FUNCT__ "MatAXPY_MPIDense" 997488007eeSBarry Smith PetscErrorCode MatAXPY_MPIDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str) 998488007eeSBarry Smith { 999488007eeSBarry Smith PetscErrorCode ierr; 1000488007eeSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)Y->data, *B = (Mat_MPIDense*)X->data; 1001488007eeSBarry Smith 1002488007eeSBarry Smith PetscFunctionBegin; 1003488007eeSBarry Smith ierr = MatAXPY(A->A,alpha,B->A,str);CHKERRQ(ierr); 1004a3fa217bSJose E. Roman ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr); 1005488007eeSBarry Smith PetscFunctionReturn(0); 1006488007eeSBarry Smith } 1007488007eeSBarry Smith 1008ba337c44SJed Brown #undef __FUNCT__ 1009ba337c44SJed Brown #define __FUNCT__ "MatConjugate_MPIDense" 10107087cfbeSBarry Smith PetscErrorCode MatConjugate_MPIDense(Mat mat) 1011ba337c44SJed Brown { 1012ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)mat->data; 1013ba337c44SJed Brown PetscErrorCode ierr; 1014ba337c44SJed Brown 1015ba337c44SJed Brown PetscFunctionBegin; 1016ba337c44SJed Brown ierr = MatConjugate(a->A);CHKERRQ(ierr); 1017ba337c44SJed Brown PetscFunctionReturn(0); 1018ba337c44SJed Brown } 1019ba337c44SJed Brown 1020ba337c44SJed Brown #undef __FUNCT__ 1021ba337c44SJed Brown #define __FUNCT__ "MatRealPart_MPIDense" 1022ba337c44SJed Brown PetscErrorCode MatRealPart_MPIDense(Mat A) 1023ba337c44SJed Brown { 1024ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1025ba337c44SJed Brown PetscErrorCode ierr; 1026ba337c44SJed Brown 1027ba337c44SJed Brown PetscFunctionBegin; 1028ba337c44SJed Brown ierr = MatRealPart(a->A);CHKERRQ(ierr); 1029ba337c44SJed Brown PetscFunctionReturn(0); 1030ba337c44SJed Brown } 1031ba337c44SJed Brown 1032ba337c44SJed Brown #undef __FUNCT__ 1033ba337c44SJed Brown #define __FUNCT__ "MatImaginaryPart_MPIDense" 1034ba337c44SJed Brown PetscErrorCode MatImaginaryPart_MPIDense(Mat A) 1035ba337c44SJed Brown { 1036ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1037ba337c44SJed Brown PetscErrorCode ierr; 1038ba337c44SJed Brown 1039ba337c44SJed Brown PetscFunctionBegin; 1040ba337c44SJed Brown ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 1041ba337c44SJed Brown PetscFunctionReturn(0); 1042ba337c44SJed Brown } 1043ba337c44SJed Brown 10440716a85fSBarry Smith extern PetscErrorCode MatGetColumnNorms_SeqDense(Mat,NormType,PetscReal*); 10450716a85fSBarry Smith #undef __FUNCT__ 10460716a85fSBarry Smith #define __FUNCT__ "MatGetColumnNorms_MPIDense" 10470716a85fSBarry Smith PetscErrorCode MatGetColumnNorms_MPIDense(Mat A,NormType type,PetscReal *norms) 10480716a85fSBarry Smith { 10490716a85fSBarry Smith PetscErrorCode ierr; 10500716a85fSBarry Smith PetscInt i,n; 10510716a85fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*) A->data; 10520716a85fSBarry Smith PetscReal *work; 10530716a85fSBarry Smith 10540716a85fSBarry Smith PetscFunctionBegin; 10550298fd71SBarry Smith ierr = MatGetSize(A,NULL,&n);CHKERRQ(ierr); 1056785e854fSJed Brown ierr = PetscMalloc1(n,&work);CHKERRQ(ierr); 10570716a85fSBarry Smith ierr = MatGetColumnNorms_SeqDense(a->A,type,work);CHKERRQ(ierr); 10580716a85fSBarry Smith if (type == NORM_2) { 10590716a85fSBarry Smith for (i=0; i<n; i++) work[i] *= work[i]; 10600716a85fSBarry Smith } 10610716a85fSBarry Smith if (type == NORM_INFINITY) { 10620716a85fSBarry Smith ierr = MPI_Allreduce(work,norms,n,MPIU_REAL,MPIU_MAX,A->hdr.comm);CHKERRQ(ierr); 10630716a85fSBarry Smith } else { 10640716a85fSBarry Smith ierr = MPI_Allreduce(work,norms,n,MPIU_REAL,MPIU_SUM,A->hdr.comm);CHKERRQ(ierr); 10650716a85fSBarry Smith } 10660716a85fSBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 10670716a85fSBarry Smith if (type == NORM_2) { 10688f1a2a5eSBarry Smith for (i=0; i<n; i++) norms[i] = PetscSqrtReal(norms[i]); 10690716a85fSBarry Smith } 10700716a85fSBarry Smith PetscFunctionReturn(0); 10710716a85fSBarry Smith } 10720716a85fSBarry Smith 107373a71a0fSBarry Smith #undef __FUNCT__ 107473a71a0fSBarry Smith #define __FUNCT__ "MatSetRandom_MPIDense" 107573a71a0fSBarry Smith static PetscErrorCode MatSetRandom_MPIDense(Mat x,PetscRandom rctx) 107673a71a0fSBarry Smith { 107773a71a0fSBarry Smith Mat_MPIDense *d = (Mat_MPIDense*)x->data; 107873a71a0fSBarry Smith PetscErrorCode ierr; 107973a71a0fSBarry Smith PetscScalar *a; 108073a71a0fSBarry Smith PetscInt m,n,i; 108173a71a0fSBarry Smith 108273a71a0fSBarry Smith PetscFunctionBegin; 108373a71a0fSBarry Smith ierr = MatGetSize(d->A,&m,&n);CHKERRQ(ierr); 10848c778c55SBarry Smith ierr = MatDenseGetArray(d->A,&a);CHKERRQ(ierr); 108573a71a0fSBarry Smith for (i=0; i<m*n; i++) { 108673a71a0fSBarry Smith ierr = PetscRandomGetValue(rctx,a+i);CHKERRQ(ierr); 108773a71a0fSBarry Smith } 10888c778c55SBarry Smith ierr = MatDenseRestoreArray(d->A,&a);CHKERRQ(ierr); 108973a71a0fSBarry Smith PetscFunctionReturn(0); 109073a71a0fSBarry Smith } 109173a71a0fSBarry Smith 10928965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/ 109309dc0095SBarry Smith static struct _MatOps MatOps_Values = { MatSetValues_MPIDense, 109409dc0095SBarry Smith MatGetRow_MPIDense, 109509dc0095SBarry Smith MatRestoreRow_MPIDense, 109609dc0095SBarry Smith MatMult_MPIDense, 109797304618SKris Buschelman /* 4*/ MatMultAdd_MPIDense, 10987c922b88SBarry Smith MatMultTranspose_MPIDense, 10997c922b88SBarry Smith MatMultTransposeAdd_MPIDense, 11008965ea79SLois Curfman McInnes 0, 110109dc0095SBarry Smith 0, 110209dc0095SBarry Smith 0, 110397304618SKris Buschelman /* 10*/ 0, 110409dc0095SBarry Smith 0, 110509dc0095SBarry Smith 0, 110609dc0095SBarry Smith 0, 110709dc0095SBarry Smith MatTranspose_MPIDense, 110897304618SKris Buschelman /* 15*/ MatGetInfo_MPIDense, 11096e4ee0c6SHong Zhang MatEqual_MPIDense, 111009dc0095SBarry Smith MatGetDiagonal_MPIDense, 11115b2fa520SLois Curfman McInnes MatDiagonalScale_MPIDense, 111209dc0095SBarry Smith MatNorm_MPIDense, 111397304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPIDense, 111409dc0095SBarry Smith MatAssemblyEnd_MPIDense, 111509dc0095SBarry Smith MatSetOption_MPIDense, 111609dc0095SBarry Smith MatZeroEntries_MPIDense, 1117d519adbfSMatthew Knepley /* 24*/ MatZeroRows_MPIDense, 1118919b68f7SBarry Smith 0, 111901b82886SBarry Smith 0, 112001b82886SBarry Smith 0, 112101b82886SBarry Smith 0, 11224994cf47SJed Brown /* 29*/ MatSetUp_MPIDense, 1123273d9f13SBarry Smith 0, 112409dc0095SBarry Smith 0, 11258c778c55SBarry Smith 0, 11268c778c55SBarry Smith 0, 1127d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPIDense, 112809dc0095SBarry Smith 0, 112909dc0095SBarry Smith 0, 113009dc0095SBarry Smith 0, 113109dc0095SBarry Smith 0, 1132d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPIDense, 11332ce60cd0SSatish Balay MatGetSubMatrices_MPIDense, 113409dc0095SBarry Smith 0, 113509dc0095SBarry Smith MatGetValues_MPIDense, 113609dc0095SBarry Smith 0, 1137d519adbfSMatthew Knepley /* 44*/ 0, 113809dc0095SBarry Smith MatScale_MPIDense, 113909dc0095SBarry Smith 0, 114009dc0095SBarry Smith 0, 114109dc0095SBarry Smith 0, 114273a71a0fSBarry Smith /* 49*/ MatSetRandom_MPIDense, 114309dc0095SBarry Smith 0, 114409dc0095SBarry Smith 0, 114509dc0095SBarry Smith 0, 114609dc0095SBarry Smith 0, 1147d519adbfSMatthew Knepley /* 54*/ 0, 114809dc0095SBarry Smith 0, 114909dc0095SBarry Smith 0, 115009dc0095SBarry Smith 0, 115109dc0095SBarry Smith 0, 1152d519adbfSMatthew Knepley /* 59*/ MatGetSubMatrix_MPIDense, 1153b9b97703SBarry Smith MatDestroy_MPIDense, 1154b9b97703SBarry Smith MatView_MPIDense, 1155357abbc8SBarry Smith 0, 115697304618SKris Buschelman 0, 1157d519adbfSMatthew Knepley /* 64*/ 0, 115897304618SKris Buschelman 0, 115997304618SKris Buschelman 0, 116097304618SKris Buschelman 0, 116197304618SKris Buschelman 0, 1162d519adbfSMatthew Knepley /* 69*/ 0, 116397304618SKris Buschelman 0, 116497304618SKris Buschelman 0, 116597304618SKris Buschelman 0, 116697304618SKris Buschelman 0, 1167d519adbfSMatthew Knepley /* 74*/ 0, 116897304618SKris Buschelman 0, 116997304618SKris Buschelman 0, 117097304618SKris Buschelman 0, 117197304618SKris Buschelman 0, 1172d519adbfSMatthew Knepley /* 79*/ 0, 117397304618SKris Buschelman 0, 117497304618SKris Buschelman 0, 117597304618SKris Buschelman 0, 11765bba2384SShri Abhyankar /* 83*/ MatLoad_MPIDense, 1177865e5f61SKris Buschelman 0, 1178865e5f61SKris Buschelman 0, 1179865e5f61SKris Buschelman 0, 1180865e5f61SKris Buschelman 0, 1181865e5f61SKris Buschelman 0, 1182d519adbfSMatthew Knepley /* 89*/ 1183865e5f61SKris Buschelman 0, 1184865e5f61SKris Buschelman 0, 1185865e5f61SKris Buschelman 0, 11862fbe02b9SBarry Smith 0, 1187ba337c44SJed Brown 0, 1188d519adbfSMatthew Knepley /* 94*/ 0, 1189865e5f61SKris Buschelman 0, 1190865e5f61SKris Buschelman 0, 1191ba337c44SJed Brown 0, 1192ba337c44SJed Brown 0, 1193ba337c44SJed Brown /* 99*/ 0, 1194ba337c44SJed Brown 0, 1195ba337c44SJed Brown 0, 1196ba337c44SJed Brown MatConjugate_MPIDense, 1197ba337c44SJed Brown 0, 1198ba337c44SJed Brown /*104*/ 0, 1199ba337c44SJed Brown MatRealPart_MPIDense, 1200ba337c44SJed Brown MatImaginaryPart_MPIDense, 120186d161a7SShri Abhyankar 0, 120286d161a7SShri Abhyankar 0, 120386d161a7SShri Abhyankar /*109*/ 0, 120486d161a7SShri Abhyankar 0, 120586d161a7SShri Abhyankar 0, 120686d161a7SShri Abhyankar 0, 120786d161a7SShri Abhyankar 0, 120886d161a7SShri Abhyankar /*114*/ 0, 120986d161a7SShri Abhyankar 0, 121086d161a7SShri Abhyankar 0, 121186d161a7SShri Abhyankar 0, 121286d161a7SShri Abhyankar 0, 121386d161a7SShri Abhyankar /*119*/ 0, 121486d161a7SShri Abhyankar 0, 121586d161a7SShri Abhyankar 0, 12160716a85fSBarry Smith 0, 12170716a85fSBarry Smith 0, 12180716a85fSBarry Smith /*124*/ 0, 12193964eb88SJed Brown MatGetColumnNorms_MPIDense, 12203964eb88SJed Brown 0, 12213964eb88SJed Brown 0, 12223964eb88SJed Brown 0, 12233964eb88SJed Brown /*129*/ 0, 12243964eb88SJed Brown 0, 12253964eb88SJed Brown 0, 12263964eb88SJed Brown 0, 12273964eb88SJed Brown 0, 12283964eb88SJed Brown /*134*/ 0, 12293964eb88SJed Brown 0, 12303964eb88SJed Brown 0, 12313964eb88SJed Brown 0, 12323964eb88SJed Brown 0, 12333964eb88SJed Brown /*139*/ 0, 1234f9426fe0SMark Adams 0, 12353964eb88SJed Brown 0 1236ba337c44SJed Brown }; 12378965ea79SLois Curfman McInnes 12384a2ae208SSatish Balay #undef __FUNCT__ 1239a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIDenseSetPreallocation_MPIDense" 12407087cfbeSBarry Smith PetscErrorCode MatMPIDenseSetPreallocation_MPIDense(Mat mat,PetscScalar *data) 1241a23d5eceSKris Buschelman { 1242a23d5eceSKris Buschelman Mat_MPIDense *a; 1243dfbe8321SBarry Smith PetscErrorCode ierr; 1244a23d5eceSKris Buschelman 1245a23d5eceSKris Buschelman PetscFunctionBegin; 1246a23d5eceSKris Buschelman mat->preallocated = PETSC_TRUE; 1247a23d5eceSKris Buschelman /* Note: For now, when data is specified above, this assumes the user correctly 1248a23d5eceSKris Buschelman allocates the local dense storage space. We should add error checking. */ 1249a23d5eceSKris Buschelman 1250a23d5eceSKris Buschelman a = (Mat_MPIDense*)mat->data; 125134ef9618SShri Abhyankar ierr = PetscLayoutSetUp(mat->rmap);CHKERRQ(ierr); 125234ef9618SShri Abhyankar ierr = PetscLayoutSetUp(mat->cmap);CHKERRQ(ierr); 125334ef9618SShri Abhyankar a->nvec = mat->cmap->n; 125434ef9618SShri Abhyankar 1255f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&a->A);CHKERRQ(ierr); 1256d0f46423SBarry Smith ierr = MatSetSizes(a->A,mat->rmap->n,mat->cmap->N,mat->rmap->n,mat->cmap->N);CHKERRQ(ierr); 12575c5985e7SKris Buschelman ierr = MatSetType(a->A,MATSEQDENSE);CHKERRQ(ierr); 12585c5985e7SKris Buschelman ierr = MatSeqDenseSetPreallocation(a->A,data);CHKERRQ(ierr); 12593bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 1260a23d5eceSKris Buschelman PetscFunctionReturn(0); 1261a23d5eceSKris Buschelman } 1262a23d5eceSKris Buschelman 1263a23d5eceSKris Buschelman #undef __FUNCT__ 12648baccfbdSHong Zhang #define __FUNCT__ "MatConvert_MPIDense_Elemental" 12658baccfbdSHong Zhang PETSC_EXTERN PetscErrorCode MatConvert_MPIDense_Elemental(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 12668baccfbdSHong Zhang { 12678baccfbdSHong Zhang PetscFunctionBegin; 12688baccfbdSHong Zhang SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for requested operation"); 12698baccfbdSHong Zhang PetscFunctionReturn(0); 12708baccfbdSHong Zhang } 12718baccfbdSHong Zhang 12728baccfbdSHong Zhang #undef __FUNCT__ 12734a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIDense" 12748cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIDense(Mat mat) 1275273d9f13SBarry Smith { 1276273d9f13SBarry Smith Mat_MPIDense *a; 1277dfbe8321SBarry Smith PetscErrorCode ierr; 1278273d9f13SBarry Smith 1279273d9f13SBarry Smith PetscFunctionBegin; 1280b00a9115SJed Brown ierr = PetscNewLog(mat,&a);CHKERRQ(ierr); 1281b0a32e0cSBarry Smith mat->data = (void*)a; 1282273d9f13SBarry Smith ierr = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1283273d9f13SBarry Smith 1284273d9f13SBarry Smith mat->insertmode = NOT_SET_VALUES; 1285ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&a->rank);CHKERRQ(ierr); 1286ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&a->size);CHKERRQ(ierr); 1287273d9f13SBarry Smith 1288273d9f13SBarry Smith /* build cache for off array entries formed */ 1289273d9f13SBarry Smith a->donotstash = PETSC_FALSE; 12902205254eSKarl Rupp 1291ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)mat),1,&mat->stash);CHKERRQ(ierr); 1292273d9f13SBarry Smith 1293273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 1294273d9f13SBarry Smith a->lvec = 0; 1295273d9f13SBarry Smith a->Mvctx = 0; 1296273d9f13SBarry Smith a->roworiented = PETSC_TRUE; 1297273d9f13SBarry Smith 1298bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",MatDenseGetArray_MPIDense);CHKERRQ(ierr); 1299bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",MatDenseRestoreArray_MPIDense);CHKERRQ(ierr); 13008baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 13018baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",MatConvert_MPIDense_Elemental);CHKERRQ(ierr); 13028baccfbdSHong Zhang #endif 1303bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C",MatGetDiagonalBlock_MPIDense);CHKERRQ(ierr); 1304bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",MatMPIDenseSetPreallocation_MPIDense);CHKERRQ(ierr); 1305bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMult_mpiaij_mpidense_C",MatMatMult_MPIAIJ_MPIDense);CHKERRQ(ierr); 1306bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C",MatMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr); 1307bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C",MatMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr); 13088949adfdSHong Zhang 13098949adfdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMult_mpiaij_mpidense_C",MatTransposeMatMult_MPIAIJ_MPIDense);CHKERRQ(ierr); 13108949adfdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultSymbolic_mpiaij_mpidense_C",MatTransposeMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr); 13118949adfdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultNumeric_mpiaij_mpidense_C",MatTransposeMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr); 131238aed534SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)mat,MATMPIDENSE);CHKERRQ(ierr); 1313273d9f13SBarry Smith PetscFunctionReturn(0); 1314273d9f13SBarry Smith } 1315273d9f13SBarry Smith 1316209238afSKris Buschelman /*MC 1317002d173eSKris Buschelman MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices. 1318209238afSKris Buschelman 1319209238afSKris Buschelman This matrix type is identical to MATSEQDENSE when constructed with a single process communicator, 1320209238afSKris Buschelman and MATMPIDENSE otherwise. 1321209238afSKris Buschelman 1322209238afSKris Buschelman Options Database Keys: 1323209238afSKris Buschelman . -mat_type dense - sets the matrix type to "dense" during a call to MatSetFromOptions() 1324209238afSKris Buschelman 1325209238afSKris Buschelman Level: beginner 1326209238afSKris Buschelman 132701b82886SBarry Smith 1328209238afSKris Buschelman .seealso: MatCreateMPIDense,MATSEQDENSE,MATMPIDENSE 1329209238afSKris Buschelman M*/ 1330209238afSKris Buschelman 13314a2ae208SSatish Balay #undef __FUNCT__ 13324a2ae208SSatish Balay #define __FUNCT__ "MatMPIDenseSetPreallocation" 1333273d9f13SBarry Smith /*@C 1334273d9f13SBarry Smith MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries 1335273d9f13SBarry Smith 1336273d9f13SBarry Smith Not collective 1337273d9f13SBarry Smith 1338273d9f13SBarry Smith Input Parameters: 13391c4f3114SJed Brown . B - the matrix 13400298fd71SBarry Smith - data - optional location of matrix data. Set data=NULL for PETSc 1341273d9f13SBarry Smith to control all matrix memory allocation. 1342273d9f13SBarry Smith 1343273d9f13SBarry Smith Notes: 1344273d9f13SBarry Smith The dense format is fully compatible with standard Fortran 77 1345273d9f13SBarry Smith storage by columns. 1346273d9f13SBarry Smith 1347273d9f13SBarry Smith The data input variable is intended primarily for Fortran programmers 1348273d9f13SBarry Smith who wish to allocate their own matrix memory space. Most users should 13490298fd71SBarry Smith set data=NULL. 1350273d9f13SBarry Smith 1351273d9f13SBarry Smith Level: intermediate 1352273d9f13SBarry Smith 1353273d9f13SBarry Smith .keywords: matrix,dense, parallel 1354273d9f13SBarry Smith 1355273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 1356273d9f13SBarry Smith @*/ 13571c4f3114SJed Brown PetscErrorCode MatMPIDenseSetPreallocation(Mat B,PetscScalar *data) 1358273d9f13SBarry Smith { 13594ac538c5SBarry Smith PetscErrorCode ierr; 1360273d9f13SBarry Smith 1361273d9f13SBarry Smith PetscFunctionBegin; 13621c4f3114SJed Brown ierr = PetscTryMethod(B,"MatMPIDenseSetPreallocation_C",(Mat,PetscScalar*),(B,data));CHKERRQ(ierr); 1363273d9f13SBarry Smith PetscFunctionReturn(0); 1364273d9f13SBarry Smith } 1365273d9f13SBarry Smith 13664a2ae208SSatish Balay #undef __FUNCT__ 136769b1f4b7SBarry Smith #define __FUNCT__ "MatCreateDense" 13688965ea79SLois Curfman McInnes /*@C 136969b1f4b7SBarry Smith MatCreateDense - Creates a parallel matrix in dense format. 13708965ea79SLois Curfman McInnes 1371db81eaa0SLois Curfman McInnes Collective on MPI_Comm 1372db81eaa0SLois Curfman McInnes 13738965ea79SLois Curfman McInnes Input Parameters: 1374db81eaa0SLois Curfman McInnes + comm - MPI communicator 13758965ea79SLois Curfman McInnes . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1376db81eaa0SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 13778965ea79SLois Curfman McInnes . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 1378db81eaa0SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 13790298fd71SBarry Smith - data - optional location of matrix data. Set data=NULL (NULL_SCALAR for Fortran users) for PETSc 1380dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 13818965ea79SLois Curfman McInnes 13828965ea79SLois Curfman McInnes Output Parameter: 1383477f1c0bSLois Curfman McInnes . A - the matrix 13848965ea79SLois Curfman McInnes 1385b259b22eSLois Curfman McInnes Notes: 138639ddd567SLois Curfman McInnes The dense format is fully compatible with standard Fortran 77 138739ddd567SLois Curfman McInnes storage by columns. 13888965ea79SLois Curfman McInnes 138918f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 139018f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 13910298fd71SBarry Smith set data=NULL (NULL_SCALAR for Fortran users). 139218f449edSLois Curfman McInnes 13938965ea79SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 13948965ea79SLois Curfman McInnes (possibly both). 13958965ea79SLois Curfman McInnes 1396027ccd11SLois Curfman McInnes Level: intermediate 1397027ccd11SLois Curfman McInnes 139839ddd567SLois Curfman McInnes .keywords: matrix,dense, parallel 13998965ea79SLois Curfman McInnes 140039ddd567SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 14018965ea79SLois Curfman McInnes @*/ 140269b1f4b7SBarry Smith PetscErrorCode MatCreateDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 14038965ea79SLois Curfman McInnes { 14046849ba73SBarry Smith PetscErrorCode ierr; 140513f74950SBarry Smith PetscMPIInt size; 14068965ea79SLois Curfman McInnes 14073a40ed3dSBarry Smith PetscFunctionBegin; 1408f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 1409f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 1410273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1411273d9f13SBarry Smith if (size > 1) { 1412273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIDENSE);CHKERRQ(ierr); 1413273d9f13SBarry Smith ierr = MatMPIDenseSetPreallocation(*A,data);CHKERRQ(ierr); 1414273d9f13SBarry Smith } else { 1415273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr); 1416273d9f13SBarry Smith ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr); 14178c469469SLois Curfman McInnes } 14183a40ed3dSBarry Smith PetscFunctionReturn(0); 14198965ea79SLois Curfman McInnes } 14208965ea79SLois Curfman McInnes 14214a2ae208SSatish Balay #undef __FUNCT__ 14224a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIDense" 14236849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat) 14248965ea79SLois Curfman McInnes { 14258965ea79SLois Curfman McInnes Mat mat; 14263501a2bdSLois Curfman McInnes Mat_MPIDense *a,*oldmat = (Mat_MPIDense*)A->data; 1427dfbe8321SBarry Smith PetscErrorCode ierr; 14288965ea79SLois Curfman McInnes 14293a40ed3dSBarry Smith PetscFunctionBegin; 14308965ea79SLois Curfman McInnes *newmat = 0; 1431ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&mat);CHKERRQ(ierr); 1432d0f46423SBarry Smith ierr = MatSetSizes(mat,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 14337adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)A)->type_name);CHKERRQ(ierr); 1434834f8fabSBarry Smith a = (Mat_MPIDense*)mat->data; 1435e04c1aa4SHong Zhang ierr = PetscMemcpy(mat->ops,A->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 14365aa7edbeSHong Zhang 1437d5f3da31SBarry Smith mat->factortype = A->factortype; 1438c456f294SBarry Smith mat->assembled = PETSC_TRUE; 1439273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 14408965ea79SLois Curfman McInnes 14418965ea79SLois Curfman McInnes a->size = oldmat->size; 14428965ea79SLois Curfman McInnes a->rank = oldmat->rank; 1443e0fa3b82SLois Curfman McInnes mat->insertmode = NOT_SET_VALUES; 1444b9b97703SBarry Smith a->nvec = oldmat->nvec; 14453782ba37SSatish Balay a->donotstash = oldmat->donotstash; 1446e04c1aa4SHong Zhang 14471e1e43feSBarry Smith ierr = PetscLayoutReference(A->rmap,&mat->rmap);CHKERRQ(ierr); 14481e1e43feSBarry Smith ierr = PetscLayoutReference(A->cmap,&mat->cmap);CHKERRQ(ierr); 14498965ea79SLois Curfman McInnes 1450329f5518SBarry Smith ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 14515609ef8eSBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 14523bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 145301b82886SBarry Smith 14548965ea79SLois Curfman McInnes *newmat = mat; 14553a40ed3dSBarry Smith PetscFunctionReturn(0); 14568965ea79SLois Curfman McInnes } 14578965ea79SLois Curfman McInnes 14584a2ae208SSatish Balay #undef __FUNCT__ 14595bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPIDense_DenseInFile" 14605bba2384SShri Abhyankar PetscErrorCode MatLoad_MPIDense_DenseInFile(MPI_Comm comm,PetscInt fd,PetscInt M,PetscInt N,Mat newmat,PetscInt sizesset) 146186d161a7SShri Abhyankar { 146286d161a7SShri Abhyankar PetscErrorCode ierr; 146386d161a7SShri Abhyankar PetscMPIInt rank,size; 146486d161a7SShri Abhyankar PetscInt *rowners,i,m,nz,j; 146586d161a7SShri Abhyankar PetscScalar *array,*vals,*vals_ptr; 146686d161a7SShri Abhyankar 146786d161a7SShri Abhyankar PetscFunctionBegin; 146886d161a7SShri Abhyankar ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 146986d161a7SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 147086d161a7SShri Abhyankar 147186d161a7SShri Abhyankar /* determine ownership of all rows */ 147286d161a7SShri Abhyankar if (newmat->rmap->n < 0) m = M/size + ((M % size) > rank); 147386d161a7SShri Abhyankar else m = newmat->rmap->n; 1474785e854fSJed Brown ierr = PetscMalloc1((size+2),&rowners);CHKERRQ(ierr); 147586d161a7SShri Abhyankar ierr = MPI_Allgather(&m,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr); 147686d161a7SShri Abhyankar rowners[0] = 0; 147786d161a7SShri Abhyankar for (i=2; i<=size; i++) { 147886d161a7SShri Abhyankar rowners[i] += rowners[i-1]; 147986d161a7SShri Abhyankar } 148086d161a7SShri Abhyankar 148186d161a7SShri Abhyankar if (!sizesset) { 148286d161a7SShri Abhyankar ierr = MatSetSizes(newmat,m,PETSC_DECIDE,M,N);CHKERRQ(ierr); 148386d161a7SShri Abhyankar } 14840298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr); 14858c778c55SBarry Smith ierr = MatDenseGetArray(newmat,&array);CHKERRQ(ierr); 148686d161a7SShri Abhyankar 148786d161a7SShri Abhyankar if (!rank) { 1488785e854fSJed Brown ierr = PetscMalloc1(m*N,&vals);CHKERRQ(ierr); 148986d161a7SShri Abhyankar 149086d161a7SShri Abhyankar /* read in my part of the matrix numerical values */ 149186d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,vals,m*N,PETSC_SCALAR);CHKERRQ(ierr); 149286d161a7SShri Abhyankar 149386d161a7SShri Abhyankar /* insert into matrix-by row (this is why cannot directly read into array */ 149486d161a7SShri Abhyankar vals_ptr = vals; 149586d161a7SShri Abhyankar for (i=0; i<m; i++) { 149686d161a7SShri Abhyankar for (j=0; j<N; j++) { 149786d161a7SShri Abhyankar array[i + j*m] = *vals_ptr++; 149886d161a7SShri Abhyankar } 149986d161a7SShri Abhyankar } 150086d161a7SShri Abhyankar 150186d161a7SShri Abhyankar /* read in other processors and ship out */ 150286d161a7SShri Abhyankar for (i=1; i<size; i++) { 150386d161a7SShri Abhyankar nz = (rowners[i+1] - rowners[i])*N; 150486d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 1505a25532f0SBarry Smith ierr = MPIULong_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)(newmat))->tag,comm);CHKERRQ(ierr); 150686d161a7SShri Abhyankar } 150786d161a7SShri Abhyankar } else { 150886d161a7SShri Abhyankar /* receive numeric values */ 1509785e854fSJed Brown ierr = PetscMalloc1(m*N,&vals);CHKERRQ(ierr); 151086d161a7SShri Abhyankar 151186d161a7SShri Abhyankar /* receive message of values*/ 1512a25532f0SBarry Smith ierr = MPIULong_Recv(vals,m*N,MPIU_SCALAR,0,((PetscObject)(newmat))->tag,comm);CHKERRQ(ierr); 151386d161a7SShri Abhyankar 151486d161a7SShri Abhyankar /* insert into matrix-by row (this is why cannot directly read into array */ 151586d161a7SShri Abhyankar vals_ptr = vals; 151686d161a7SShri Abhyankar for (i=0; i<m; i++) { 151786d161a7SShri Abhyankar for (j=0; j<N; j++) { 151886d161a7SShri Abhyankar array[i + j*m] = *vals_ptr++; 151986d161a7SShri Abhyankar } 152086d161a7SShri Abhyankar } 152186d161a7SShri Abhyankar } 15228c778c55SBarry Smith ierr = MatDenseRestoreArray(newmat,&array);CHKERRQ(ierr); 152386d161a7SShri Abhyankar ierr = PetscFree(rowners);CHKERRQ(ierr); 152486d161a7SShri Abhyankar ierr = PetscFree(vals);CHKERRQ(ierr); 152586d161a7SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 152686d161a7SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 152786d161a7SShri Abhyankar PetscFunctionReturn(0); 152886d161a7SShri Abhyankar } 152986d161a7SShri Abhyankar 153086d161a7SShri Abhyankar #undef __FUNCT__ 15315bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPIDense" 1532112444f4SShri Abhyankar PetscErrorCode MatLoad_MPIDense(Mat newmat,PetscViewer viewer) 153386d161a7SShri Abhyankar { 153486d161a7SShri Abhyankar PetscScalar *vals,*svals; 1535ce94432eSBarry Smith MPI_Comm comm; 153686d161a7SShri Abhyankar MPI_Status status; 153786d161a7SShri Abhyankar PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*rowners,*sndcounts,m,maxnz; 153886d161a7SShri Abhyankar PetscInt header[4],*rowlengths = 0,M,N,*cols; 153986d161a7SShri Abhyankar PetscInt *ourlens,*procsnz = 0,*offlens,jj,*mycols,*smycols; 154086d161a7SShri Abhyankar PetscInt i,nz,j,rstart,rend,sizesset=1,grows,gcols; 154186d161a7SShri Abhyankar int fd; 154286d161a7SShri Abhyankar PetscErrorCode ierr; 154386d161a7SShri Abhyankar 154486d161a7SShri Abhyankar PetscFunctionBegin; 1545ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr); 154686d161a7SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 154786d161a7SShri Abhyankar ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 154886d161a7SShri Abhyankar if (!rank) { 154986d161a7SShri Abhyankar ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 155086d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr); 155186d161a7SShri Abhyankar if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 155286d161a7SShri Abhyankar } 155386d161a7SShri Abhyankar if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) sizesset = 0; 155486d161a7SShri Abhyankar 155586d161a7SShri Abhyankar ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 155686d161a7SShri Abhyankar M = header[1]; N = header[2]; nz = header[3]; 155786d161a7SShri Abhyankar 155886d161a7SShri Abhyankar /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */ 155986d161a7SShri Abhyankar if (sizesset && newmat->rmap->N < 0) newmat->rmap->N = M; 156086d161a7SShri Abhyankar if (sizesset && newmat->cmap->N < 0) newmat->cmap->N = N; 156186d161a7SShri Abhyankar 156286d161a7SShri Abhyankar /* If global sizes are set, check if they are consistent with that given in the file */ 156386d161a7SShri Abhyankar if (sizesset) { 156486d161a7SShri Abhyankar ierr = MatGetSize(newmat,&grows,&gcols);CHKERRQ(ierr); 156586d161a7SShri Abhyankar } 1566abd38a8fSBarry Smith if (sizesset && newmat->rmap->N != grows) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%d) and input matrix has (%d)",M,grows); 1567abd38a8fSBarry Smith if (sizesset && newmat->cmap->N != gcols) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%d) and input matrix has (%d)",N,gcols); 156886d161a7SShri Abhyankar 156986d161a7SShri Abhyankar /* 157086d161a7SShri Abhyankar Handle case where matrix is stored on disk as a dense matrix 157186d161a7SShri Abhyankar */ 157286d161a7SShri Abhyankar if (nz == MATRIX_BINARY_FORMAT_DENSE) { 15735bba2384SShri Abhyankar ierr = MatLoad_MPIDense_DenseInFile(comm,fd,M,N,newmat,sizesset);CHKERRQ(ierr); 157486d161a7SShri Abhyankar PetscFunctionReturn(0); 157586d161a7SShri Abhyankar } 157686d161a7SShri Abhyankar 157786d161a7SShri Abhyankar /* determine ownership of all rows */ 15782205254eSKarl Rupp if (newmat->rmap->n < 0) { 15792205254eSKarl Rupp ierr = PetscMPIIntCast(M/size + ((M % size) > rank),&m);CHKERRQ(ierr); 15802205254eSKarl Rupp } else { 15812205254eSKarl Rupp ierr = PetscMPIIntCast(newmat->rmap->n,&m);CHKERRQ(ierr); 15822205254eSKarl Rupp } 1583785e854fSJed Brown ierr = PetscMalloc1((size+2),&rowners);CHKERRQ(ierr); 158486d161a7SShri Abhyankar ierr = MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 158586d161a7SShri Abhyankar rowners[0] = 0; 158686d161a7SShri Abhyankar for (i=2; i<=size; i++) { 158786d161a7SShri Abhyankar rowners[i] += rowners[i-1]; 158886d161a7SShri Abhyankar } 158986d161a7SShri Abhyankar rstart = rowners[rank]; 159086d161a7SShri Abhyankar rend = rowners[rank+1]; 159186d161a7SShri Abhyankar 159286d161a7SShri Abhyankar /* distribute row lengths to all processors */ 1593dcca6d9dSJed Brown ierr = PetscMalloc2(rend-rstart,&ourlens,rend-rstart,&offlens);CHKERRQ(ierr); 159486d161a7SShri Abhyankar if (!rank) { 1595785e854fSJed Brown ierr = PetscMalloc1(M,&rowlengths);CHKERRQ(ierr); 159686d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 1597785e854fSJed Brown ierr = PetscMalloc1(size,&sndcounts);CHKERRQ(ierr); 159886d161a7SShri Abhyankar for (i=0; i<size; i++) sndcounts[i] = rowners[i+1] - rowners[i]; 159986d161a7SShri Abhyankar ierr = MPI_Scatterv(rowlengths,sndcounts,rowners,MPIU_INT,ourlens,rend-rstart,MPIU_INT,0,comm);CHKERRQ(ierr); 160086d161a7SShri Abhyankar ierr = PetscFree(sndcounts);CHKERRQ(ierr); 160186d161a7SShri Abhyankar } else { 160286d161a7SShri Abhyankar ierr = MPI_Scatterv(0,0,0,MPIU_INT,ourlens,rend-rstart,MPIU_INT,0,comm);CHKERRQ(ierr); 160386d161a7SShri Abhyankar } 160486d161a7SShri Abhyankar 160586d161a7SShri Abhyankar if (!rank) { 160686d161a7SShri Abhyankar /* calculate the number of nonzeros on each processor */ 1607785e854fSJed Brown ierr = PetscMalloc1(size,&procsnz);CHKERRQ(ierr); 160886d161a7SShri Abhyankar ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 160986d161a7SShri Abhyankar for (i=0; i<size; i++) { 161086d161a7SShri Abhyankar for (j=rowners[i]; j< rowners[i+1]; j++) { 161186d161a7SShri Abhyankar procsnz[i] += rowlengths[j]; 161286d161a7SShri Abhyankar } 161386d161a7SShri Abhyankar } 161486d161a7SShri Abhyankar ierr = PetscFree(rowlengths);CHKERRQ(ierr); 161586d161a7SShri Abhyankar 161686d161a7SShri Abhyankar /* determine max buffer needed and allocate it */ 161786d161a7SShri Abhyankar maxnz = 0; 161886d161a7SShri Abhyankar for (i=0; i<size; i++) { 161986d161a7SShri Abhyankar maxnz = PetscMax(maxnz,procsnz[i]); 162086d161a7SShri Abhyankar } 1621785e854fSJed Brown ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr); 162286d161a7SShri Abhyankar 162386d161a7SShri Abhyankar /* read in my part of the matrix column indices */ 162486d161a7SShri Abhyankar nz = procsnz[0]; 1625785e854fSJed Brown ierr = PetscMalloc1(nz,&mycols);CHKERRQ(ierr); 162686d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 162786d161a7SShri Abhyankar 162886d161a7SShri Abhyankar /* read in every one elses and ship off */ 162986d161a7SShri Abhyankar for (i=1; i<size; i++) { 163086d161a7SShri Abhyankar nz = procsnz[i]; 163186d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 163286d161a7SShri Abhyankar ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 163386d161a7SShri Abhyankar } 163486d161a7SShri Abhyankar ierr = PetscFree(cols);CHKERRQ(ierr); 163586d161a7SShri Abhyankar } else { 163686d161a7SShri Abhyankar /* determine buffer space needed for message */ 163786d161a7SShri Abhyankar nz = 0; 163886d161a7SShri Abhyankar for (i=0; i<m; i++) { 163986d161a7SShri Abhyankar nz += ourlens[i]; 164086d161a7SShri Abhyankar } 1641785e854fSJed Brown ierr = PetscMalloc1((nz+1),&mycols);CHKERRQ(ierr); 164286d161a7SShri Abhyankar 164386d161a7SShri Abhyankar /* receive message of column indices*/ 164486d161a7SShri Abhyankar ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 164586d161a7SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 164686d161a7SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 164786d161a7SShri Abhyankar } 164886d161a7SShri Abhyankar 164986d161a7SShri Abhyankar /* loop over local rows, determining number of off diagonal entries */ 165086d161a7SShri Abhyankar ierr = PetscMemzero(offlens,m*sizeof(PetscInt));CHKERRQ(ierr); 165186d161a7SShri Abhyankar jj = 0; 165286d161a7SShri Abhyankar for (i=0; i<m; i++) { 165386d161a7SShri Abhyankar for (j=0; j<ourlens[i]; j++) { 165486d161a7SShri Abhyankar if (mycols[jj] < rstart || mycols[jj] >= rend) offlens[i]++; 165586d161a7SShri Abhyankar jj++; 165686d161a7SShri Abhyankar } 165786d161a7SShri Abhyankar } 165886d161a7SShri Abhyankar 165986d161a7SShri Abhyankar /* create our matrix */ 16602205254eSKarl Rupp for (i=0; i<m; i++) ourlens[i] -= offlens[i]; 166186d161a7SShri Abhyankar 166286d161a7SShri Abhyankar if (!sizesset) { 166386d161a7SShri Abhyankar ierr = MatSetSizes(newmat,m,PETSC_DECIDE,M,N);CHKERRQ(ierr); 166486d161a7SShri Abhyankar } 16650298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr); 16662205254eSKarl Rupp for (i=0; i<m; i++) ourlens[i] += offlens[i]; 166786d161a7SShri Abhyankar 166886d161a7SShri Abhyankar if (!rank) { 1669785e854fSJed Brown ierr = PetscMalloc1(maxnz,&vals);CHKERRQ(ierr); 167086d161a7SShri Abhyankar 167186d161a7SShri Abhyankar /* read in my part of the matrix numerical values */ 167286d161a7SShri Abhyankar nz = procsnz[0]; 167386d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 167486d161a7SShri Abhyankar 167586d161a7SShri Abhyankar /* insert into matrix */ 167686d161a7SShri Abhyankar jj = rstart; 167786d161a7SShri Abhyankar smycols = mycols; 167886d161a7SShri Abhyankar svals = vals; 167986d161a7SShri Abhyankar for (i=0; i<m; i++) { 168086d161a7SShri Abhyankar ierr = MatSetValues(newmat,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 168186d161a7SShri Abhyankar smycols += ourlens[i]; 168286d161a7SShri Abhyankar svals += ourlens[i]; 168386d161a7SShri Abhyankar jj++; 168486d161a7SShri Abhyankar } 168586d161a7SShri Abhyankar 168686d161a7SShri Abhyankar /* read in other processors and ship out */ 168786d161a7SShri Abhyankar for (i=1; i<size; i++) { 168886d161a7SShri Abhyankar nz = procsnz[i]; 168986d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 169086d161a7SShri Abhyankar ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 169186d161a7SShri Abhyankar } 169286d161a7SShri Abhyankar ierr = PetscFree(procsnz);CHKERRQ(ierr); 169386d161a7SShri Abhyankar } else { 169486d161a7SShri Abhyankar /* receive numeric values */ 1695785e854fSJed Brown ierr = PetscMalloc1((nz+1),&vals);CHKERRQ(ierr); 169686d161a7SShri Abhyankar 169786d161a7SShri Abhyankar /* receive message of values*/ 169886d161a7SShri Abhyankar ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr); 169986d161a7SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 170086d161a7SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 170186d161a7SShri Abhyankar 170286d161a7SShri Abhyankar /* insert into matrix */ 170386d161a7SShri Abhyankar jj = rstart; 170486d161a7SShri Abhyankar smycols = mycols; 170586d161a7SShri Abhyankar svals = vals; 170686d161a7SShri Abhyankar for (i=0; i<m; i++) { 170786d161a7SShri Abhyankar ierr = MatSetValues(newmat,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 170886d161a7SShri Abhyankar smycols += ourlens[i]; 170986d161a7SShri Abhyankar svals += ourlens[i]; 171086d161a7SShri Abhyankar jj++; 171186d161a7SShri Abhyankar } 171286d161a7SShri Abhyankar } 171386d161a7SShri Abhyankar ierr = PetscFree2(ourlens,offlens);CHKERRQ(ierr); 171486d161a7SShri Abhyankar ierr = PetscFree(vals);CHKERRQ(ierr); 171586d161a7SShri Abhyankar ierr = PetscFree(mycols);CHKERRQ(ierr); 171686d161a7SShri Abhyankar ierr = PetscFree(rowners);CHKERRQ(ierr); 171786d161a7SShri Abhyankar 171886d161a7SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 171986d161a7SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 172086d161a7SShri Abhyankar PetscFunctionReturn(0); 172186d161a7SShri Abhyankar } 172286d161a7SShri Abhyankar 172386d161a7SShri Abhyankar #undef __FUNCT__ 17246e4ee0c6SHong Zhang #define __FUNCT__ "MatEqual_MPIDense" 1725ace3abfcSBarry Smith PetscErrorCode MatEqual_MPIDense(Mat A,Mat B,PetscBool *flag) 17266e4ee0c6SHong Zhang { 17276e4ee0c6SHong Zhang Mat_MPIDense *matB = (Mat_MPIDense*)B->data,*matA = (Mat_MPIDense*)A->data; 17286e4ee0c6SHong Zhang Mat a,b; 1729ace3abfcSBarry Smith PetscBool flg; 17306e4ee0c6SHong Zhang PetscErrorCode ierr; 173190ace30eSBarry Smith 17326e4ee0c6SHong Zhang PetscFunctionBegin; 17336e4ee0c6SHong Zhang a = matA->A; 17346e4ee0c6SHong Zhang b = matB->A; 17356e4ee0c6SHong Zhang ierr = MatEqual(a,b,&flg);CHKERRQ(ierr); 1736ce94432eSBarry Smith ierr = MPI_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 17376e4ee0c6SHong Zhang PetscFunctionReturn(0); 17386e4ee0c6SHong Zhang } 173990ace30eSBarry Smith 1740