xref: /petsc/src/mat/impls/dense/mpi/mpidense.c (revision 4b6ae80f5283f4064cd7602bed63d33ad0cf5f70)
1be1d678aSKris Buschelman 
2ed3cc1f0SBarry Smith /*
3ed3cc1f0SBarry Smith    Basic functions for basic parallel dense matrices.
4ed3cc1f0SBarry Smith */
5ed3cc1f0SBarry Smith 
6c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h>    /*I   "petscmat.h"  I*/
78949adfdSHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h>
8baa3c1c6SHong Zhang #include <petscblaslapack.h>
98965ea79SLois Curfman McInnes 
10ab92ecdeSBarry Smith /*@
11ab92ecdeSBarry Smith 
12ab92ecdeSBarry Smith       MatDenseGetLocalMatrix - For a MATMPIDENSE or MATSEQDENSE matrix returns the sequential
13ab92ecdeSBarry Smith               matrix that represents the operator. For sequential matrices it returns itself.
14ab92ecdeSBarry Smith 
15ab92ecdeSBarry Smith     Input Parameter:
16ab92ecdeSBarry Smith .      A - the Seq or MPI dense matrix
17ab92ecdeSBarry Smith 
18ab92ecdeSBarry Smith     Output Parameter:
19ab92ecdeSBarry Smith .      B - the inner matrix
20ab92ecdeSBarry Smith 
218e6c10adSSatish Balay     Level: intermediate
228e6c10adSSatish Balay 
23ab92ecdeSBarry Smith @*/
24ab92ecdeSBarry Smith PetscErrorCode MatDenseGetLocalMatrix(Mat A,Mat *B)
25ab92ecdeSBarry Smith {
26ab92ecdeSBarry Smith   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
27ab92ecdeSBarry Smith   PetscErrorCode ierr;
28ace3abfcSBarry Smith   PetscBool      flg;
29ab92ecdeSBarry Smith 
30ab92ecdeSBarry Smith   PetscFunctionBegin;
31d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
32d5ea218eSStefano Zampini   PetscValidPointer(B,2);
33251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIDENSE,&flg);CHKERRQ(ierr);
342205254eSKarl Rupp   if (flg) *B = mat->A;
352205254eSKarl Rupp   else *B = A;
36ab92ecdeSBarry Smith   PetscFunctionReturn(0);
37ab92ecdeSBarry Smith }
38ab92ecdeSBarry Smith 
39ba8c8a56SBarry Smith PetscErrorCode MatGetRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
40ba8c8a56SBarry Smith {
41ba8c8a56SBarry Smith   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
42ba8c8a56SBarry Smith   PetscErrorCode ierr;
43d0f46423SBarry Smith   PetscInt       lrow,rstart = A->rmap->rstart,rend = A->rmap->rend;
44ba8c8a56SBarry Smith 
45ba8c8a56SBarry Smith   PetscFunctionBegin;
46e7e72b3dSBarry Smith   if (row < rstart || row >= rend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows");
47ba8c8a56SBarry Smith   lrow = row - rstart;
48ba8c8a56SBarry Smith   ierr = MatGetRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v);CHKERRQ(ierr);
49ba8c8a56SBarry Smith   PetscFunctionReturn(0);
50ba8c8a56SBarry Smith }
51ba8c8a56SBarry Smith 
52637a0070SStefano Zampini PetscErrorCode MatRestoreRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
53ba8c8a56SBarry Smith {
54637a0070SStefano Zampini   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
55ba8c8a56SBarry Smith   PetscErrorCode ierr;
56637a0070SStefano Zampini   PetscInt       lrow,rstart = A->rmap->rstart,rend = A->rmap->rend;
57ba8c8a56SBarry Smith 
58ba8c8a56SBarry Smith   PetscFunctionBegin;
59637a0070SStefano Zampini   if (row < rstart || row >= rend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows");
60637a0070SStefano Zampini   lrow = row - rstart;
61637a0070SStefano Zampini   ierr = MatRestoreRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v);CHKERRQ(ierr);
62ba8c8a56SBarry Smith   PetscFunctionReturn(0);
63ba8c8a56SBarry Smith }
64ba8c8a56SBarry Smith 
6511bd1e4dSLisandro Dalcin PetscErrorCode  MatGetDiagonalBlock_MPIDense(Mat A,Mat *a)
660de54da6SSatish Balay {
670de54da6SSatish Balay   Mat_MPIDense   *mdn = (Mat_MPIDense*)A->data;
686849ba73SBarry Smith   PetscErrorCode ierr;
69d0f46423SBarry Smith   PetscInt       m = A->rmap->n,rstart = A->rmap->rstart;
7087828ca2SBarry Smith   PetscScalar    *array;
710de54da6SSatish Balay   MPI_Comm       comm;
72*4b6ae80fSStefano Zampini   PetscBool      flg;
7311bd1e4dSLisandro Dalcin   Mat            B;
740de54da6SSatish Balay 
750de54da6SSatish Balay   PetscFunctionBegin;
76*4b6ae80fSStefano Zampini   ierr = MatHasCongruentLayouts(A,&flg);CHKERRQ(ierr);
77*4b6ae80fSStefano Zampini   if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only square matrices supported.");
7811bd1e4dSLisandro Dalcin   ierr = PetscObjectQuery((PetscObject)A,"DiagonalBlock",(PetscObject*)&B);CHKERRQ(ierr);
79*4b6ae80fSStefano Zampini   if (!B) { /* This should use a new function, e.g. MatDenseGetSubMatrix (not create) */
80*4b6ae80fSStefano Zampini 
81*4b6ae80fSStefano Zampini     ierr = PetscObjectTypeCompare((PetscObject)mdn->A,MATSEQDENSECUDA,&flg);CHKERRQ(ierr);
82*4b6ae80fSStefano Zampini     if (flg) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Not coded for %s. Send an email to petsc-dev@mcs.anl.gov to request this feature",MATSEQDENSECUDA);
830de54da6SSatish Balay     ierr = PetscObjectGetComm((PetscObject)(mdn->A),&comm);CHKERRQ(ierr);
8411bd1e4dSLisandro Dalcin     ierr = MatCreate(comm,&B);CHKERRQ(ierr);
8511bd1e4dSLisandro Dalcin     ierr = MatSetSizes(B,m,m,m,m);CHKERRQ(ierr);
8611bd1e4dSLisandro Dalcin     ierr = MatSetType(B,((PetscObject)mdn->A)->type_name);CHKERRQ(ierr);
87*4b6ae80fSStefano Zampini     ierr = MatDenseGetArrayRead(mdn->A,(const PetscScalar**)&array);CHKERRQ(ierr);
8811bd1e4dSLisandro Dalcin     ierr = MatSeqDenseSetPreallocation(B,array+m*rstart);CHKERRQ(ierr);
89*4b6ae80fSStefano Zampini     ierr = MatDenseRestoreArrayRead(mdn->A,(const PetscScalar**)&array);CHKERRQ(ierr);
9011bd1e4dSLisandro Dalcin     ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
9111bd1e4dSLisandro Dalcin     ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
9211bd1e4dSLisandro Dalcin     ierr = PetscObjectCompose((PetscObject)A,"DiagonalBlock",(PetscObject)B);CHKERRQ(ierr);
9311bd1e4dSLisandro Dalcin     *a   = B;
9411bd1e4dSLisandro Dalcin     ierr = MatDestroy(&B);CHKERRQ(ierr);
952205254eSKarl Rupp   } else *a = B;
960de54da6SSatish Balay   PetscFunctionReturn(0);
970de54da6SSatish Balay }
980de54da6SSatish Balay 
9913f74950SBarry Smith PetscErrorCode MatSetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],const PetscScalar v[],InsertMode addv)
1008965ea79SLois Curfman McInnes {
10139b7565bSBarry Smith   Mat_MPIDense   *A = (Mat_MPIDense*)mat->data;
102dfbe8321SBarry Smith   PetscErrorCode ierr;
103d0f46423SBarry Smith   PetscInt       i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row;
104ace3abfcSBarry Smith   PetscBool      roworiented = A->roworiented;
1058965ea79SLois Curfman McInnes 
1063a40ed3dSBarry Smith   PetscFunctionBegin;
1078965ea79SLois Curfman McInnes   for (i=0; i<m; i++) {
1085ef9f2a5SBarry Smith     if (idxm[i] < 0) continue;
109e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large");
1108965ea79SLois Curfman McInnes     if (idxm[i] >= rstart && idxm[i] < rend) {
1118965ea79SLois Curfman McInnes       row = idxm[i] - rstart;
11239b7565bSBarry Smith       if (roworiented) {
11339b7565bSBarry Smith         ierr = MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv);CHKERRQ(ierr);
1143a40ed3dSBarry Smith       } else {
1158965ea79SLois Curfman McInnes         for (j=0; j<n; j++) {
1165ef9f2a5SBarry Smith           if (idxn[j] < 0) continue;
117e32f2f54SBarry Smith           if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large");
11839b7565bSBarry Smith           ierr = MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv);CHKERRQ(ierr);
11939b7565bSBarry Smith         }
1208965ea79SLois Curfman McInnes       }
1212205254eSKarl Rupp     } else if (!A->donotstash) {
1225080c13bSMatthew G Knepley       mat->assembled = PETSC_FALSE;
12339b7565bSBarry Smith       if (roworiented) {
124b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,idxm[i],n,idxn,v+i*n,PETSC_FALSE);CHKERRQ(ierr);
125d36fbae8SSatish Balay       } else {
126b400d20cSBarry Smith         ierr = MatStashValuesCol_Private(&mat->stash,idxm[i],n,idxn,v+i,m,PETSC_FALSE);CHKERRQ(ierr);
12739b7565bSBarry Smith       }
128b49de8d1SLois Curfman McInnes     }
129b49de8d1SLois Curfman McInnes   }
1303a40ed3dSBarry Smith   PetscFunctionReturn(0);
131b49de8d1SLois Curfman McInnes }
132b49de8d1SLois Curfman McInnes 
13313f74950SBarry Smith PetscErrorCode MatGetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
134b49de8d1SLois Curfman McInnes {
135b49de8d1SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
136dfbe8321SBarry Smith   PetscErrorCode ierr;
137d0f46423SBarry Smith   PetscInt       i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row;
138b49de8d1SLois Curfman McInnes 
1393a40ed3dSBarry Smith   PetscFunctionBegin;
140b49de8d1SLois Curfman McInnes   for (i=0; i<m; i++) {
141e32f2f54SBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); */
142e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large");
143b49de8d1SLois Curfman McInnes     if (idxm[i] >= rstart && idxm[i] < rend) {
144b49de8d1SLois Curfman McInnes       row = idxm[i] - rstart;
145b49de8d1SLois Curfman McInnes       for (j=0; j<n; j++) {
146e32f2f54SBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); */
147e7e72b3dSBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large");
148b49de8d1SLois Curfman McInnes         ierr = MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j);CHKERRQ(ierr);
149b49de8d1SLois Curfman McInnes       }
150e7e72b3dSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
1518965ea79SLois Curfman McInnes   }
1523a40ed3dSBarry Smith   PetscFunctionReturn(0);
1538965ea79SLois Curfman McInnes }
1548965ea79SLois Curfman McInnes 
15549a6ff4bSBarry Smith static PetscErrorCode MatDenseGetLDA_MPIDense(Mat A,PetscInt *lda)
15649a6ff4bSBarry Smith {
15749a6ff4bSBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
15849a6ff4bSBarry Smith   PetscErrorCode ierr;
15949a6ff4bSBarry Smith 
16049a6ff4bSBarry Smith   PetscFunctionBegin;
16149a6ff4bSBarry Smith   ierr = MatDenseGetLDA(a->A,lda);CHKERRQ(ierr);
16249a6ff4bSBarry Smith   PetscFunctionReturn(0);
16349a6ff4bSBarry Smith }
16449a6ff4bSBarry Smith 
165637a0070SStefano Zampini static PetscErrorCode MatDenseGetArray_MPIDense(Mat A,PetscScalar **array)
166ff14e315SSatish Balay {
167ff14e315SSatish Balay   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
168dfbe8321SBarry Smith   PetscErrorCode ierr;
169ff14e315SSatish Balay 
1703a40ed3dSBarry Smith   PetscFunctionBegin;
1718c778c55SBarry Smith   ierr = MatDenseGetArray(a->A,array);CHKERRQ(ierr);
1723a40ed3dSBarry Smith   PetscFunctionReturn(0);
173ff14e315SSatish Balay }
174ff14e315SSatish Balay 
175637a0070SStefano Zampini static PetscErrorCode MatDenseGetArrayRead_MPIDense(Mat A,const PetscScalar **array)
1768572280aSBarry Smith {
1778572280aSBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
1788572280aSBarry Smith   PetscErrorCode ierr;
1798572280aSBarry Smith 
1808572280aSBarry Smith   PetscFunctionBegin;
1818572280aSBarry Smith   ierr = MatDenseGetArrayRead(a->A,array);CHKERRQ(ierr);
1828572280aSBarry Smith   PetscFunctionReturn(0);
1838572280aSBarry Smith }
1848572280aSBarry Smith 
1856947451fSStefano Zampini static PetscErrorCode MatDenseGetArrayWrite_MPIDense(Mat A,PetscScalar **array)
1866947451fSStefano Zampini {
1876947451fSStefano Zampini   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
1886947451fSStefano Zampini   PetscErrorCode ierr;
1896947451fSStefano Zampini 
1906947451fSStefano Zampini   PetscFunctionBegin;
1916947451fSStefano Zampini   ierr = MatDenseGetArrayWrite(a->A,array);CHKERRQ(ierr);
1926947451fSStefano Zampini   PetscFunctionReturn(0);
1936947451fSStefano Zampini }
1946947451fSStefano Zampini 
195637a0070SStefano Zampini static PetscErrorCode MatDensePlaceArray_MPIDense(Mat A,const PetscScalar *array)
196d3042a70SBarry Smith {
197d3042a70SBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
198d3042a70SBarry Smith   PetscErrorCode ierr;
199d3042a70SBarry Smith 
200d3042a70SBarry Smith   PetscFunctionBegin;
2016947451fSStefano Zampini   if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first");
202d3042a70SBarry Smith   ierr = MatDensePlaceArray(a->A,array);CHKERRQ(ierr);
203d3042a70SBarry Smith   PetscFunctionReturn(0);
204d3042a70SBarry Smith }
205d3042a70SBarry Smith 
206d3042a70SBarry Smith static PetscErrorCode MatDenseResetArray_MPIDense(Mat A)
207d3042a70SBarry Smith {
208d3042a70SBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
209d3042a70SBarry Smith   PetscErrorCode ierr;
210d3042a70SBarry Smith 
211d3042a70SBarry Smith   PetscFunctionBegin;
2126947451fSStefano Zampini   if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first");
213d3042a70SBarry Smith   ierr = MatDenseResetArray(a->A);CHKERRQ(ierr);
214d3042a70SBarry Smith   PetscFunctionReturn(0);
215d3042a70SBarry Smith }
216d3042a70SBarry Smith 
217d5ea218eSStefano Zampini static PetscErrorCode MatDenseReplaceArray_MPIDense(Mat A,const PetscScalar *array)
218d5ea218eSStefano Zampini {
219d5ea218eSStefano Zampini   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
220d5ea218eSStefano Zampini   PetscErrorCode ierr;
221d5ea218eSStefano Zampini 
222d5ea218eSStefano Zampini   PetscFunctionBegin;
223d5ea218eSStefano Zampini   if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first");
224d5ea218eSStefano Zampini   ierr = MatDenseReplaceArray(a->A,array);CHKERRQ(ierr);
225d5ea218eSStefano Zampini   PetscFunctionReturn(0);
226d5ea218eSStefano Zampini }
227d5ea218eSStefano Zampini 
2287dae84e0SHong Zhang static PetscErrorCode MatCreateSubMatrix_MPIDense(Mat A,IS isrow,IS iscol,MatReuse scall,Mat *B)
229ca3fa75bSLois Curfman McInnes {
230ca3fa75bSLois Curfman McInnes   Mat_MPIDense      *mat  = (Mat_MPIDense*)A->data,*newmatd;
2316849ba73SBarry Smith   PetscErrorCode    ierr;
232637a0070SStefano Zampini   PetscInt          lda,i,j,rstart,rend,nrows,ncols,Ncols,nlrows,nlcols;
2335d0c19d7SBarry Smith   const PetscInt    *irow,*icol;
234637a0070SStefano Zampini   const PetscScalar *v;
235637a0070SStefano Zampini   PetscScalar       *bv;
236ca3fa75bSLois Curfman McInnes   Mat               newmat;
2374aa3045dSJed Brown   IS                iscol_local;
23842a884f0SBarry Smith   MPI_Comm          comm_is,comm_mat;
239ca3fa75bSLois Curfman McInnes 
240ca3fa75bSLois Curfman McInnes   PetscFunctionBegin;
24142a884f0SBarry Smith   ierr = PetscObjectGetComm((PetscObject)A,&comm_mat);CHKERRQ(ierr);
24242a884f0SBarry Smith   ierr = PetscObjectGetComm((PetscObject)iscol,&comm_is);CHKERRQ(ierr);
24342a884f0SBarry Smith   if (comm_mat != comm_is) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NOTSAMECOMM,"IS communicator must match matrix communicator");
24442a884f0SBarry Smith 
2454aa3045dSJed Brown   ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr);
246ca3fa75bSLois Curfman McInnes   ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr);
2474aa3045dSJed Brown   ierr = ISGetIndices(iscol_local,&icol);CHKERRQ(ierr);
248b9b97703SBarry Smith   ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr);
249b9b97703SBarry Smith   ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr);
2504aa3045dSJed Brown   ierr = ISGetSize(iscol,&Ncols);CHKERRQ(ierr); /* global number of columns, size of iscol_local */
251ca3fa75bSLois Curfman McInnes 
252ca3fa75bSLois Curfman McInnes   /* No parallel redistribution currently supported! Should really check each index set
2537eba5e9cSLois Curfman McInnes      to comfirm that it is OK.  ... Currently supports only submatrix same partitioning as
2547eba5e9cSLois Curfman McInnes      original matrix! */
255ca3fa75bSLois Curfman McInnes 
256ca3fa75bSLois Curfman McInnes   ierr = MatGetLocalSize(A,&nlrows,&nlcols);CHKERRQ(ierr);
2577eba5e9cSLois Curfman McInnes   ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr);
258ca3fa75bSLois Curfman McInnes 
259ca3fa75bSLois Curfman McInnes   /* Check submatrix call */
260ca3fa75bSLois Curfman McInnes   if (scall == MAT_REUSE_MATRIX) {
261e32f2f54SBarry Smith     /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */
2627eba5e9cSLois Curfman McInnes     /* Really need to test rows and column sizes! */
263ca3fa75bSLois Curfman McInnes     newmat = *B;
264ca3fa75bSLois Curfman McInnes   } else {
265ca3fa75bSLois Curfman McInnes     /* Create and fill new matrix */
266ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)A),&newmat);CHKERRQ(ierr);
2674aa3045dSJed Brown     ierr = MatSetSizes(newmat,nrows,ncols,PETSC_DECIDE,Ncols);CHKERRQ(ierr);
2687adad957SLisandro Dalcin     ierr = MatSetType(newmat,((PetscObject)A)->type_name);CHKERRQ(ierr);
2690298fd71SBarry Smith     ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr);
270ca3fa75bSLois Curfman McInnes   }
271ca3fa75bSLois Curfman McInnes 
272ca3fa75bSLois Curfman McInnes   /* Now extract the data pointers and do the copy, column at a time */
273ca3fa75bSLois Curfman McInnes   newmatd = (Mat_MPIDense*)newmat->data;
274637a0070SStefano Zampini   ierr = MatDenseGetArray(newmatd->A,&bv);CHKERRQ(ierr);
275637a0070SStefano Zampini   ierr = MatDenseGetArrayRead(mat->A,&v);CHKERRQ(ierr);
276637a0070SStefano Zampini   ierr = MatDenseGetLDA(mat->A,&lda);CHKERRQ(ierr);
2774aa3045dSJed Brown   for (i=0; i<Ncols; i++) {
278637a0070SStefano Zampini     const PetscScalar *av = v + lda*icol[i];
279ca3fa75bSLois Curfman McInnes     for (j=0; j<nrows; j++) {
2807eba5e9cSLois Curfman McInnes       *bv++ = av[irow[j] - rstart];
281ca3fa75bSLois Curfman McInnes     }
282ca3fa75bSLois Curfman McInnes   }
283637a0070SStefano Zampini   ierr = MatDenseRestoreArrayRead(mat->A,&v);CHKERRQ(ierr);
284637a0070SStefano Zampini   ierr = MatDenseRestoreArray(newmatd->A,&bv);CHKERRQ(ierr);
285ca3fa75bSLois Curfman McInnes 
286ca3fa75bSLois Curfman McInnes   /* Assemble the matrices so that the correct flags are set */
287ca3fa75bSLois Curfman McInnes   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
288ca3fa75bSLois Curfman McInnes   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
289ca3fa75bSLois Curfman McInnes 
290ca3fa75bSLois Curfman McInnes   /* Free work space */
291ca3fa75bSLois Curfman McInnes   ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr);
2925bdf786aSShri Abhyankar   ierr = ISRestoreIndices(iscol_local,&icol);CHKERRQ(ierr);
29332bb1f2dSLisandro Dalcin   ierr = ISDestroy(&iscol_local);CHKERRQ(ierr);
294ca3fa75bSLois Curfman McInnes   *B   = newmat;
295ca3fa75bSLois Curfman McInnes   PetscFunctionReturn(0);
296ca3fa75bSLois Curfman McInnes }
297ca3fa75bSLois Curfman McInnes 
298637a0070SStefano Zampini PetscErrorCode MatDenseRestoreArray_MPIDense(Mat A,PetscScalar **array)
299ff14e315SSatish Balay {
30073a71a0fSBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
30173a71a0fSBarry Smith   PetscErrorCode ierr;
30273a71a0fSBarry Smith 
3033a40ed3dSBarry Smith   PetscFunctionBegin;
3048c778c55SBarry Smith   ierr = MatDenseRestoreArray(a->A,array);CHKERRQ(ierr);
3053a40ed3dSBarry Smith   PetscFunctionReturn(0);
306ff14e315SSatish Balay }
307ff14e315SSatish Balay 
308637a0070SStefano Zampini PetscErrorCode MatDenseRestoreArrayRead_MPIDense(Mat A,const PetscScalar **array)
3098572280aSBarry Smith {
3108572280aSBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
3118572280aSBarry Smith   PetscErrorCode ierr;
3128572280aSBarry Smith 
3138572280aSBarry Smith   PetscFunctionBegin;
3148572280aSBarry Smith   ierr = MatDenseRestoreArrayRead(a->A,array);CHKERRQ(ierr);
3158572280aSBarry Smith   PetscFunctionReturn(0);
3168572280aSBarry Smith }
3178572280aSBarry Smith 
3186947451fSStefano Zampini PetscErrorCode MatDenseRestoreArrayWrite_MPIDense(Mat A,PetscScalar **array)
3196947451fSStefano Zampini {
3206947451fSStefano Zampini   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
3216947451fSStefano Zampini   PetscErrorCode ierr;
3226947451fSStefano Zampini 
3236947451fSStefano Zampini   PetscFunctionBegin;
3246947451fSStefano Zampini   ierr = MatDenseRestoreArrayWrite(a->A,array);CHKERRQ(ierr);
3256947451fSStefano Zampini   PetscFunctionReturn(0);
3266947451fSStefano Zampini }
3276947451fSStefano Zampini 
328dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode)
3298965ea79SLois Curfman McInnes {
33039ddd567SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
331dfbe8321SBarry Smith   PetscErrorCode ierr;
33213f74950SBarry Smith   PetscInt       nstash,reallocs;
3338965ea79SLois Curfman McInnes 
3343a40ed3dSBarry Smith   PetscFunctionBegin;
335910cf402Sprj-   if (mdn->donotstash || mat->nooffprocentries) return(0);
3368965ea79SLois Curfman McInnes 
337d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
3388798bf22SSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
339ae15b995SBarry Smith   ierr = PetscInfo2(mdn->A,"Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
3403a40ed3dSBarry Smith   PetscFunctionReturn(0);
3418965ea79SLois Curfman McInnes }
3428965ea79SLois Curfman McInnes 
343dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode)
3448965ea79SLois Curfman McInnes {
34539ddd567SLois Curfman McInnes   Mat_MPIDense   *mdn=(Mat_MPIDense*)mat->data;
3466849ba73SBarry Smith   PetscErrorCode ierr;
34713f74950SBarry Smith   PetscInt       i,*row,*col,flg,j,rstart,ncols;
34813f74950SBarry Smith   PetscMPIInt    n;
34987828ca2SBarry Smith   PetscScalar    *val;
3508965ea79SLois Curfman McInnes 
3513a40ed3dSBarry Smith   PetscFunctionBegin;
352910cf402Sprj-   if (!mdn->donotstash && !mat->nooffprocentries) {
3538965ea79SLois Curfman McInnes     /*  wait on receives */
3547ef1d9bdSSatish Balay     while (1) {
3558798bf22SSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
3567ef1d9bdSSatish Balay       if (!flg) break;
3578965ea79SLois Curfman McInnes 
3587ef1d9bdSSatish Balay       for (i=0; i<n;) {
3597ef1d9bdSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
3602205254eSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
3612205254eSKarl Rupp           if (row[j] != rstart) break;
3622205254eSKarl Rupp         }
3637ef1d9bdSSatish Balay         if (j < n) ncols = j-i;
3647ef1d9bdSSatish Balay         else       ncols = n-i;
3657ef1d9bdSSatish Balay         /* Now assemble all these values with a single function call */
3664b4eb8d3SJed Brown         ierr = MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr);
3677ef1d9bdSSatish Balay         i    = j;
3688965ea79SLois Curfman McInnes       }
3697ef1d9bdSSatish Balay     }
3708798bf22SSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
371910cf402Sprj-   }
3728965ea79SLois Curfman McInnes 
37339ddd567SLois Curfman McInnes   ierr = MatAssemblyBegin(mdn->A,mode);CHKERRQ(ierr);
37439ddd567SLois Curfman McInnes   ierr = MatAssemblyEnd(mdn->A,mode);CHKERRQ(ierr);
3758965ea79SLois Curfman McInnes 
3766d4a8577SBarry Smith   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
37739ddd567SLois Curfman McInnes     ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr);
3788965ea79SLois Curfman McInnes   }
3793a40ed3dSBarry Smith   PetscFunctionReturn(0);
3808965ea79SLois Curfman McInnes }
3818965ea79SLois Curfman McInnes 
382dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIDense(Mat A)
3838965ea79SLois Curfman McInnes {
384dfbe8321SBarry Smith   PetscErrorCode ierr;
38539ddd567SLois Curfman McInnes   Mat_MPIDense   *l = (Mat_MPIDense*)A->data;
3863a40ed3dSBarry Smith 
3873a40ed3dSBarry Smith   PetscFunctionBegin;
3883a40ed3dSBarry Smith   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
3893a40ed3dSBarry Smith   PetscFunctionReturn(0);
3908965ea79SLois Curfman McInnes }
3918965ea79SLois Curfman McInnes 
392637a0070SStefano Zampini PetscErrorCode MatZeroRows_MPIDense(Mat A,PetscInt n,const PetscInt rows[],PetscScalar diag,Vec x,Vec b)
3938965ea79SLois Curfman McInnes {
39439ddd567SLois Curfman McInnes   Mat_MPIDense      *l = (Mat_MPIDense*)A->data;
3956849ba73SBarry Smith   PetscErrorCode    ierr;
396637a0070SStefano Zampini   PetscInt          i,len,*lrows;
397637a0070SStefano Zampini 
398637a0070SStefano Zampini   PetscFunctionBegin;
399637a0070SStefano Zampini   /* get locally owned rows */
400637a0070SStefano Zampini   ierr = PetscLayoutMapLocal(A->rmap,n,rows,&len,&lrows,NULL);CHKERRQ(ierr);
401637a0070SStefano Zampini   /* fix right hand side if needed */
402637a0070SStefano Zampini   if (x && b) {
40397b48c8fSBarry Smith     const PetscScalar *xx;
40497b48c8fSBarry Smith     PetscScalar       *bb;
4058965ea79SLois Curfman McInnes 
40697b48c8fSBarry Smith     ierr = VecGetArrayRead(x, &xx);CHKERRQ(ierr);
407637a0070SStefano Zampini     ierr = VecGetArrayWrite(b, &bb);CHKERRQ(ierr);
408637a0070SStefano Zampini     for (i=0;i<len;++i) bb[lrows[i]] = diag*xx[lrows[i]];
40997b48c8fSBarry Smith     ierr = VecRestoreArrayRead(x, &xx);CHKERRQ(ierr);
410637a0070SStefano Zampini     ierr = VecRestoreArrayWrite(b, &bb);CHKERRQ(ierr);
41197b48c8fSBarry Smith   }
412637a0070SStefano Zampini   ierr = MatZeroRows(l->A,len,lrows,0.0,NULL,NULL);CHKERRQ(ierr);
413e2eb51b1SBarry Smith   if (diag != 0.0) {
414637a0070SStefano Zampini     Vec d;
415b9679d65SBarry Smith 
416637a0070SStefano Zampini     ierr = MatCreateVecs(A,NULL,&d);CHKERRQ(ierr);
417637a0070SStefano Zampini     ierr = VecSet(d,diag);CHKERRQ(ierr);
418637a0070SStefano Zampini     ierr = MatDiagonalSet(A,d,INSERT_VALUES);CHKERRQ(ierr);
419637a0070SStefano Zampini     ierr = VecDestroy(&d);CHKERRQ(ierr);
420b9679d65SBarry Smith   }
421606d414cSSatish Balay   ierr = PetscFree(lrows);CHKERRQ(ierr);
4223a40ed3dSBarry Smith   PetscFunctionReturn(0);
4238965ea79SLois Curfman McInnes }
4248965ea79SLois Curfman McInnes 
425cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMult_SeqDense(Mat,Vec,Vec);
426cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultAdd_SeqDense(Mat,Vec,Vec,Vec);
427cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTranspose_SeqDense(Mat,Vec,Vec);
428cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTransposeAdd_SeqDense(Mat,Vec,Vec,Vec);
429cc2e6a90SBarry Smith 
430dfbe8321SBarry Smith PetscErrorCode MatMult_MPIDense(Mat mat,Vec xx,Vec yy)
4318965ea79SLois Curfman McInnes {
43239ddd567SLois Curfman McInnes   Mat_MPIDense      *mdn = (Mat_MPIDense*)mat->data;
433dfbe8321SBarry Smith   PetscErrorCode    ierr;
434637a0070SStefano Zampini   const PetscScalar *ax;
435637a0070SStefano Zampini   PetscScalar       *ay;
436c456f294SBarry Smith 
4373a40ed3dSBarry Smith   PetscFunctionBegin;
438637a0070SStefano Zampini   ierr = VecGetArrayReadInPlace(xx,&ax);CHKERRQ(ierr);
439637a0070SStefano Zampini   ierr = VecGetArrayInPlace(mdn->lvec,&ay);CHKERRQ(ierr);
440637a0070SStefano Zampini   ierr = PetscSFBcastBegin(mdn->Mvctx,MPIU_SCALAR,ax,ay);CHKERRQ(ierr);
441637a0070SStefano Zampini   ierr = PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ax,ay);CHKERRQ(ierr);
442637a0070SStefano Zampini   ierr = VecRestoreArrayInPlace(mdn->lvec,&ay);CHKERRQ(ierr);
443637a0070SStefano Zampini   ierr = VecRestoreArrayReadInPlace(xx,&ax);CHKERRQ(ierr);
444637a0070SStefano Zampini   ierr = (*mdn->A->ops->mult)(mdn->A,mdn->lvec,yy);CHKERRQ(ierr);
4453a40ed3dSBarry Smith   PetscFunctionReturn(0);
4468965ea79SLois Curfman McInnes }
4478965ea79SLois Curfman McInnes 
448dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz)
4498965ea79SLois Curfman McInnes {
45039ddd567SLois Curfman McInnes   Mat_MPIDense      *mdn = (Mat_MPIDense*)mat->data;
451dfbe8321SBarry Smith   PetscErrorCode    ierr;
452637a0070SStefano Zampini   const PetscScalar *ax;
453637a0070SStefano Zampini   PetscScalar       *ay;
454c456f294SBarry Smith 
4553a40ed3dSBarry Smith   PetscFunctionBegin;
456637a0070SStefano Zampini   ierr = VecGetArrayReadInPlace(xx,&ax);CHKERRQ(ierr);
457637a0070SStefano Zampini   ierr = VecGetArrayInPlace(mdn->lvec,&ay);CHKERRQ(ierr);
458637a0070SStefano Zampini   ierr = PetscSFBcastBegin(mdn->Mvctx,MPIU_SCALAR,ax,ay);CHKERRQ(ierr);
459637a0070SStefano Zampini   ierr = PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ax,ay);CHKERRQ(ierr);
460637a0070SStefano Zampini   ierr = VecRestoreArrayInPlace(mdn->lvec,&ay);CHKERRQ(ierr);
461637a0070SStefano Zampini   ierr = VecRestoreArrayReadInPlace(xx,&ax);CHKERRQ(ierr);
462637a0070SStefano Zampini   ierr = (*mdn->A->ops->multadd)(mdn->A,mdn->lvec,yy,zz);CHKERRQ(ierr);
4633a40ed3dSBarry Smith   PetscFunctionReturn(0);
4648965ea79SLois Curfman McInnes }
4658965ea79SLois Curfman McInnes 
466dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIDense(Mat A,Vec xx,Vec yy)
467096963f5SLois Curfman McInnes {
468096963f5SLois Curfman McInnes   Mat_MPIDense      *a = (Mat_MPIDense*)A->data;
469dfbe8321SBarry Smith   PetscErrorCode    ierr;
470637a0070SStefano Zampini   const PetscScalar *ax;
471637a0070SStefano Zampini   PetscScalar       *ay;
472096963f5SLois Curfman McInnes 
4733a40ed3dSBarry Smith   PetscFunctionBegin;
474637a0070SStefano Zampini   ierr = VecSet(yy,0.0);CHKERRQ(ierr);
475637a0070SStefano Zampini   ierr = (*a->A->ops->multtranspose)(a->A,xx,a->lvec);CHKERRQ(ierr);
476637a0070SStefano Zampini   ierr = VecGetArrayReadInPlace(a->lvec,&ax);CHKERRQ(ierr);
477637a0070SStefano Zampini   ierr = VecGetArrayInPlace(yy,&ay);CHKERRQ(ierr);
478637a0070SStefano Zampini   ierr = PetscSFReduceBegin(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM);CHKERRQ(ierr);
479637a0070SStefano Zampini   ierr = PetscSFReduceEnd(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM);CHKERRQ(ierr);
480637a0070SStefano Zampini   ierr = VecRestoreArrayReadInPlace(a->lvec,&ax);CHKERRQ(ierr);
481637a0070SStefano Zampini   ierr = VecRestoreArrayInPlace(yy,&ay);CHKERRQ(ierr);
4823a40ed3dSBarry Smith   PetscFunctionReturn(0);
483096963f5SLois Curfman McInnes }
484096963f5SLois Curfman McInnes 
485dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz)
486096963f5SLois Curfman McInnes {
487096963f5SLois Curfman McInnes   Mat_MPIDense      *a = (Mat_MPIDense*)A->data;
488dfbe8321SBarry Smith   PetscErrorCode    ierr;
489637a0070SStefano Zampini   const PetscScalar *ax;
490637a0070SStefano Zampini   PetscScalar       *ay;
491096963f5SLois Curfman McInnes 
4923a40ed3dSBarry Smith   PetscFunctionBegin;
4933501a2bdSLois Curfman McInnes   ierr = VecCopy(yy,zz);CHKERRQ(ierr);
494637a0070SStefano Zampini   ierr = (*a->A->ops->multtranspose)(a->A,xx,a->lvec);CHKERRQ(ierr);
495637a0070SStefano Zampini   ierr = VecGetArrayReadInPlace(a->lvec,&ax);CHKERRQ(ierr);
496637a0070SStefano Zampini   ierr = VecGetArrayInPlace(zz,&ay);CHKERRQ(ierr);
497637a0070SStefano Zampini   ierr = PetscSFReduceBegin(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM);CHKERRQ(ierr);
498637a0070SStefano Zampini   ierr = PetscSFReduceEnd(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM);CHKERRQ(ierr);
499637a0070SStefano Zampini   ierr = VecRestoreArrayReadInPlace(a->lvec,&ax);CHKERRQ(ierr);
500637a0070SStefano Zampini   ierr = VecRestoreArrayInPlace(zz,&ay);CHKERRQ(ierr);
5013a40ed3dSBarry Smith   PetscFunctionReturn(0);
502096963f5SLois Curfman McInnes }
503096963f5SLois Curfman McInnes 
504dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIDense(Mat A,Vec v)
5058965ea79SLois Curfman McInnes {
50639ddd567SLois Curfman McInnes   Mat_MPIDense      *a    = (Mat_MPIDense*)A->data;
507dfbe8321SBarry Smith   PetscErrorCode    ierr;
508637a0070SStefano Zampini   PetscInt          lda,len,i,n,m = A->rmap->n,radd;
50987828ca2SBarry Smith   PetscScalar       *x,zero = 0.0;
510637a0070SStefano Zampini   const PetscScalar *av;
511ed3cc1f0SBarry Smith 
5123a40ed3dSBarry Smith   PetscFunctionBegin;
5132dcb1b2aSMatthew Knepley   ierr = VecSet(v,zero);CHKERRQ(ierr);
5141ebc52fbSHong Zhang   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
515096963f5SLois Curfman McInnes   ierr = VecGetSize(v,&n);CHKERRQ(ierr);
516e32f2f54SBarry Smith   if (n != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec");
517d0f46423SBarry Smith   len  = PetscMin(a->A->rmap->n,a->A->cmap->n);
518d0f46423SBarry Smith   radd = A->rmap->rstart*m;
519637a0070SStefano Zampini   ierr = MatDenseGetArrayRead(a->A,&av);CHKERRQ(ierr);
520637a0070SStefano Zampini   ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr);
52144cd7ae7SLois Curfman McInnes   for (i=0; i<len; i++) {
522637a0070SStefano Zampini     x[i] = av[radd + i*lda + i];
523096963f5SLois Curfman McInnes   }
524637a0070SStefano Zampini   ierr = MatDenseRestoreArrayRead(a->A,&av);CHKERRQ(ierr);
5251ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
5263a40ed3dSBarry Smith   PetscFunctionReturn(0);
5278965ea79SLois Curfman McInnes }
5288965ea79SLois Curfman McInnes 
529dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIDense(Mat mat)
5308965ea79SLois Curfman McInnes {
5313501a2bdSLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
532dfbe8321SBarry Smith   PetscErrorCode ierr;
533ed3cc1f0SBarry Smith 
5343a40ed3dSBarry Smith   PetscFunctionBegin;
535aa482453SBarry Smith #if defined(PETSC_USE_LOG)
536d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D, Cols=%D",mat->rmap->N,mat->cmap->N);
5378965ea79SLois Curfman McInnes #endif
5388798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
5396bf464f9SBarry Smith   ierr = MatDestroy(&mdn->A);CHKERRQ(ierr);
5406bf464f9SBarry Smith   ierr = VecDestroy(&mdn->lvec);CHKERRQ(ierr);
541637a0070SStefano Zampini   ierr = PetscSFDestroy(&mdn->Mvctx);CHKERRQ(ierr);
5426947451fSStefano Zampini   ierr = VecDestroy(&mdn->cvec);CHKERRQ(ierr);
54301b82886SBarry Smith 
544bf0cc555SLisandro Dalcin   ierr = PetscFree(mat->data);CHKERRQ(ierr);
545dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
5468baccfbdSHong Zhang 
54749a6ff4bSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",NULL);CHKERRQ(ierr);
5488baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",NULL);CHKERRQ(ierr);
5498572280aSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",NULL);CHKERRQ(ierr);
5508572280aSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",NULL);CHKERRQ(ierr);
5518572280aSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",NULL);CHKERRQ(ierr);
5526947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayWrite_C",NULL);CHKERRQ(ierr);
5536947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayWrite_C",NULL);CHKERRQ(ierr);
554d3042a70SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",NULL);CHKERRQ(ierr);
555d3042a70SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",NULL);CHKERRQ(ierr);
556d5ea218eSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseReplaceArray_C",NULL);CHKERRQ(ierr);
5578baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
5588baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",NULL);CHKERRQ(ierr);
5598baccfbdSHong Zhang #endif
560bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",NULL);CHKERRQ(ierr);
5614222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaij_mpidense_C",NULL);CHKERRQ(ierr);
5624222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaij_C",NULL);CHKERRQ(ierr);
563bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C",NULL);CHKERRQ(ierr);
564bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C",NULL);CHKERRQ(ierr);
56552c5f739Sprj-   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_nest_mpidense_C",NULL);CHKERRQ(ierr);
56652c5f739Sprj-   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_nest_mpidense_C",NULL);CHKERRQ(ierr);
5678baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultSymbolic_mpiaij_mpidense_C",NULL);CHKERRQ(ierr);
5688baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultNumeric_mpiaij_mpidense_C",NULL);CHKERRQ(ierr);
56986aefd0dSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",NULL);CHKERRQ(ierr);
57086aefd0dSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",NULL);CHKERRQ(ierr);
5716947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",NULL);CHKERRQ(ierr);
5726947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",NULL);CHKERRQ(ierr);
5736947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",NULL);CHKERRQ(ierr);
5746947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",NULL);CHKERRQ(ierr);
5756947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",NULL);CHKERRQ(ierr);
5766947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",NULL);CHKERRQ(ierr);
5773a40ed3dSBarry Smith   PetscFunctionReturn(0);
5788965ea79SLois Curfman McInnes }
57939ddd567SLois Curfman McInnes 
58052c5f739Sprj- PETSC_INTERN PetscErrorCode MatView_SeqDense(Mat,PetscViewer);
58152c5f739Sprj- 
5829804daf3SBarry Smith #include <petscdraw.h>
5836849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
5848965ea79SLois Curfman McInnes {
58539ddd567SLois Curfman McInnes   Mat_MPIDense      *mdn = (Mat_MPIDense*)mat->data;
586dfbe8321SBarry Smith   PetscErrorCode    ierr;
5877da1fb6eSBarry Smith   PetscMPIInt       rank = mdn->rank;
58819fd82e9SBarry Smith   PetscViewerType   vtype;
589ace3abfcSBarry Smith   PetscBool         iascii,isdraw;
590b0a32e0cSBarry Smith   PetscViewer       sviewer;
591f3ef73ceSBarry Smith   PetscViewerFormat format;
5928965ea79SLois Curfman McInnes 
5933a40ed3dSBarry Smith   PetscFunctionBegin;
594251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
595251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
59632077d6dSBarry Smith   if (iascii) {
597b0a32e0cSBarry Smith     ierr = PetscViewerGetType(viewer,&vtype);CHKERRQ(ierr);
598b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
599456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
6004e220ebcSLois Curfman McInnes       MatInfo info;
601888f2ed8SSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
6021575c14dSBarry Smith       ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr);
6037b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"  [%d] local rows %D nz %D nz alloced %D mem %D \n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory);CHKERRQ(ierr);
604b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
6051575c14dSBarry Smith       ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr);
606637a0070SStefano Zampini       ierr = PetscSFView(mdn->Mvctx,viewer);CHKERRQ(ierr);
6073a40ed3dSBarry Smith       PetscFunctionReturn(0);
608fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
6093a40ed3dSBarry Smith       PetscFunctionReturn(0);
6108965ea79SLois Curfman McInnes     }
611f1af5d2fSBarry Smith   } else if (isdraw) {
612b0a32e0cSBarry Smith     PetscDraw draw;
613ace3abfcSBarry Smith     PetscBool isnull;
614f1af5d2fSBarry Smith 
615b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
616b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr);
617f1af5d2fSBarry Smith     if (isnull) PetscFunctionReturn(0);
618f1af5d2fSBarry Smith   }
61977ed5343SBarry Smith 
6207da1fb6eSBarry Smith   {
6218965ea79SLois Curfman McInnes     /* assemble the entire matrix onto first processor. */
6228965ea79SLois Curfman McInnes     Mat         A;
623d0f46423SBarry Smith     PetscInt    M = mat->rmap->N,N = mat->cmap->N,m,row,i,nz;
624ba8c8a56SBarry Smith     PetscInt    *cols;
625ba8c8a56SBarry Smith     PetscScalar *vals;
6268965ea79SLois Curfman McInnes 
627ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr);
6288965ea79SLois Curfman McInnes     if (!rank) {
629f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
6303a40ed3dSBarry Smith     } else {
631f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
6328965ea79SLois Curfman McInnes     }
6337adad957SLisandro Dalcin     /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */
634878740d9SKris Buschelman     ierr = MatSetType(A,MATMPIDENSE);CHKERRQ(ierr);
6350298fd71SBarry Smith     ierr = MatMPIDenseSetPreallocation(A,NULL);CHKERRQ(ierr);
6363bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr);
6378965ea79SLois Curfman McInnes 
63839ddd567SLois Curfman McInnes     /* Copy the matrix ... This isn't the most efficient means,
63939ddd567SLois Curfman McInnes        but it's quick for now */
64051022da4SBarry Smith     A->insertmode = INSERT_VALUES;
6412205254eSKarl Rupp 
6422205254eSKarl Rupp     row = mat->rmap->rstart;
6432205254eSKarl Rupp     m   = mdn->A->rmap->n;
6448965ea79SLois Curfman McInnes     for (i=0; i<m; i++) {
645ba8c8a56SBarry Smith       ierr = MatGetRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr);
646ba8c8a56SBarry Smith       ierr = MatSetValues_MPIDense(A,1,&row,nz,cols,vals,INSERT_VALUES);CHKERRQ(ierr);
647ba8c8a56SBarry Smith       ierr = MatRestoreRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr);
64839ddd567SLois Curfman McInnes       row++;
6498965ea79SLois Curfman McInnes     }
6508965ea79SLois Curfman McInnes 
6516d4a8577SBarry Smith     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
6526d4a8577SBarry Smith     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
6533f08860eSBarry Smith     ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr);
654b9b97703SBarry Smith     if (!rank) {
6551a9d3c3cSBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPIDense*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr);
6567da1fb6eSBarry Smith       ierr = MatView_SeqDense(((Mat_MPIDense*)(A->data))->A,sviewer);CHKERRQ(ierr);
6578965ea79SLois Curfman McInnes     }
6583f08860eSBarry Smith     ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr);
659b0a32e0cSBarry Smith     ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
6606bf464f9SBarry Smith     ierr = MatDestroy(&A);CHKERRQ(ierr);
6618965ea79SLois Curfman McInnes   }
6623a40ed3dSBarry Smith   PetscFunctionReturn(0);
6638965ea79SLois Curfman McInnes }
6648965ea79SLois Curfman McInnes 
665dfbe8321SBarry Smith PetscErrorCode MatView_MPIDense(Mat mat,PetscViewer viewer)
6668965ea79SLois Curfman McInnes {
667dfbe8321SBarry Smith   PetscErrorCode ierr;
668ace3abfcSBarry Smith   PetscBool      iascii,isbinary,isdraw,issocket;
6698965ea79SLois Curfman McInnes 
670433994e6SBarry Smith   PetscFunctionBegin;
671251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
672251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
673251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr);
674251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
6750f5bd95cSBarry Smith 
67632077d6dSBarry Smith   if (iascii || issocket || isdraw) {
677f1af5d2fSBarry Smith     ierr = MatView_MPIDense_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
6780f5bd95cSBarry Smith   } else if (isbinary) {
6798491ab44SLisandro Dalcin     ierr = MatView_Dense_Binary(mat,viewer);CHKERRQ(ierr);
68011aeaf0aSBarry Smith   }
6813a40ed3dSBarry Smith   PetscFunctionReturn(0);
6828965ea79SLois Curfman McInnes }
6838965ea79SLois Curfman McInnes 
684dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info)
6858965ea79SLois Curfman McInnes {
6863501a2bdSLois Curfman McInnes   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
6873501a2bdSLois Curfman McInnes   Mat            mdn  = mat->A;
688dfbe8321SBarry Smith   PetscErrorCode ierr;
6893966268fSBarry Smith   PetscLogDouble isend[5],irecv[5];
6908965ea79SLois Curfman McInnes 
6913a40ed3dSBarry Smith   PetscFunctionBegin;
6924e220ebcSLois Curfman McInnes   info->block_size = 1.0;
6932205254eSKarl Rupp 
6944e220ebcSLois Curfman McInnes   ierr = MatGetInfo(mdn,MAT_LOCAL,info);CHKERRQ(ierr);
6952205254eSKarl Rupp 
6964e220ebcSLois Curfman McInnes   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
6974e220ebcSLois Curfman McInnes   isend[3] = info->memory;  isend[4] = info->mallocs;
6988965ea79SLois Curfman McInnes   if (flag == MAT_LOCAL) {
6994e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
7004e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
7014e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
7024e220ebcSLois Curfman McInnes     info->memory       = isend[3];
7034e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
7048965ea79SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_MAX) {
7053966268fSBarry Smith     ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
7062205254eSKarl Rupp 
7074e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
7084e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
7094e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
7104e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
7114e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
7128965ea79SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_SUM) {
7133966268fSBarry Smith     ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
7142205254eSKarl Rupp 
7154e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
7164e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
7174e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
7184e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
7194e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
7208965ea79SLois Curfman McInnes   }
7214e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
7224e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
7234e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
7243a40ed3dSBarry Smith   PetscFunctionReturn(0);
7258965ea79SLois Curfman McInnes }
7268965ea79SLois Curfman McInnes 
727ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIDense(Mat A,MatOption op,PetscBool flg)
7288965ea79SLois Curfman McInnes {
72939ddd567SLois Curfman McInnes   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
730dfbe8321SBarry Smith   PetscErrorCode ierr;
7318965ea79SLois Curfman McInnes 
7323a40ed3dSBarry Smith   PetscFunctionBegin;
73312c028f9SKris Buschelman   switch (op) {
734512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
73512c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
73612c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
73743674050SBarry Smith     MatCheckPreallocated(A,1);
7384e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
73912c028f9SKris Buschelman     break;
74012c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
74143674050SBarry Smith     MatCheckPreallocated(A,1);
7424e0d8c25SBarry Smith     a->roworiented = flg;
7434e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
74412c028f9SKris Buschelman     break;
7454e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
74613fa8e87SLisandro Dalcin   case MAT_KEEP_NONZERO_PATTERN:
74712c028f9SKris Buschelman   case MAT_USE_HASH_TABLE:
748071fcb05SBarry Smith   case MAT_SORTED_FULL:
749290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
75012c028f9SKris Buschelman     break;
75112c028f9SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
7524e0d8c25SBarry Smith     a->donotstash = flg;
75312c028f9SKris Buschelman     break;
75477e54ba9SKris Buschelman   case MAT_SYMMETRIC:
75577e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
7569a4540c5SBarry Smith   case MAT_HERMITIAN:
7579a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
758600fe468SBarry Smith   case MAT_IGNORE_LOWER_TRIANGULAR:
7595d7aebe8SStefano Zampini   case MAT_IGNORE_ZERO_ENTRIES:
760290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
76177e54ba9SKris Buschelman     break;
76212c028f9SKris Buschelman   default:
763e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %s",MatOptions[op]);
7643a40ed3dSBarry Smith   }
7653a40ed3dSBarry Smith   PetscFunctionReturn(0);
7668965ea79SLois Curfman McInnes }
7678965ea79SLois Curfman McInnes 
768dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIDense(Mat A,Vec ll,Vec rr)
7695b2fa520SLois Curfman McInnes {
7705b2fa520SLois Curfman McInnes   Mat_MPIDense      *mdn = (Mat_MPIDense*)A->data;
771637a0070SStefano Zampini   const PetscScalar *l;
772637a0070SStefano Zampini   PetscScalar       x,*v,*vv,*r;
773dfbe8321SBarry Smith   PetscErrorCode    ierr;
774637a0070SStefano Zampini   PetscInt          i,j,s2a,s3a,s2,s3,m=mdn->A->rmap->n,n=mdn->A->cmap->n,lda;
7755b2fa520SLois Curfman McInnes 
7765b2fa520SLois Curfman McInnes   PetscFunctionBegin;
777637a0070SStefano Zampini   ierr = MatDenseGetArray(mdn->A,&vv);CHKERRQ(ierr);
778637a0070SStefano Zampini   ierr = MatDenseGetLDA(mdn->A,&lda);CHKERRQ(ierr);
77972d926a5SLois Curfman McInnes   ierr = MatGetLocalSize(A,&s2,&s3);CHKERRQ(ierr);
7805b2fa520SLois Curfman McInnes   if (ll) {
78172d926a5SLois Curfman McInnes     ierr = VecGetLocalSize(ll,&s2a);CHKERRQ(ierr);
782637a0070SStefano Zampini     if (s2a != s2) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vector non-conforming local size, %D != %D", s2a, s2);
783bca11509SBarry Smith     ierr = VecGetArrayRead(ll,&l);CHKERRQ(ierr);
7845b2fa520SLois Curfman McInnes     for (i=0; i<m; i++) {
7855b2fa520SLois Curfman McInnes       x = l[i];
786637a0070SStefano Zampini       v = vv + i;
787637a0070SStefano Zampini       for (j=0; j<n; j++) { (*v) *= x; v+= lda;}
7885b2fa520SLois Curfman McInnes     }
789bca11509SBarry Smith     ierr = VecRestoreArrayRead(ll,&l);CHKERRQ(ierr);
790637a0070SStefano Zampini     ierr = PetscLogFlops(1.0*n*m);CHKERRQ(ierr);
7915b2fa520SLois Curfman McInnes   }
7925b2fa520SLois Curfman McInnes   if (rr) {
793637a0070SStefano Zampini     const PetscScalar *ar;
794637a0070SStefano Zampini 
795175be7b4SMatthew Knepley     ierr = VecGetLocalSize(rr,&s3a);CHKERRQ(ierr);
796e32f2f54SBarry Smith     if (s3a != s3) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vec non-conforming local size, %d != %d.", s3a, s3);
797637a0070SStefano Zampini     ierr = VecGetArrayRead(rr,&ar);CHKERRQ(ierr);
798637a0070SStefano Zampini     ierr = VecGetArray(mdn->lvec,&r);CHKERRQ(ierr);
799637a0070SStefano Zampini     ierr = PetscSFBcastBegin(mdn->Mvctx,MPIU_SCALAR,ar,r);CHKERRQ(ierr);
800637a0070SStefano Zampini     ierr = PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ar,r);CHKERRQ(ierr);
801637a0070SStefano Zampini     ierr = VecRestoreArrayRead(rr,&ar);CHKERRQ(ierr);
8025b2fa520SLois Curfman McInnes     for (i=0; i<n; i++) {
8035b2fa520SLois Curfman McInnes       x = r[i];
804637a0070SStefano Zampini       v = vv + i*lda;
8052205254eSKarl Rupp       for (j=0; j<m; j++) (*v++) *= x;
8065b2fa520SLois Curfman McInnes     }
807637a0070SStefano Zampini     ierr = VecRestoreArray(mdn->lvec,&r);CHKERRQ(ierr);
808637a0070SStefano Zampini     ierr = PetscLogFlops(1.0*n*m);CHKERRQ(ierr);
8095b2fa520SLois Curfman McInnes   }
810637a0070SStefano Zampini   ierr = MatDenseRestoreArray(mdn->A,&vv);CHKERRQ(ierr);
8115b2fa520SLois Curfman McInnes   PetscFunctionReturn(0);
8125b2fa520SLois Curfman McInnes }
8135b2fa520SLois Curfman McInnes 
814dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIDense(Mat A,NormType type,PetscReal *nrm)
815096963f5SLois Curfman McInnes {
8163501a2bdSLois Curfman McInnes   Mat_MPIDense      *mdn = (Mat_MPIDense*)A->data;
817dfbe8321SBarry Smith   PetscErrorCode    ierr;
81813f74950SBarry Smith   PetscInt          i,j;
819329f5518SBarry Smith   PetscReal         sum = 0.0;
820637a0070SStefano Zampini   const PetscScalar *av,*v;
8213501a2bdSLois Curfman McInnes 
8223a40ed3dSBarry Smith   PetscFunctionBegin;
823637a0070SStefano Zampini   ierr = MatDenseGetArrayRead(mdn->A,&av);CHKERRQ(ierr);
824637a0070SStefano Zampini   v    = av;
8253501a2bdSLois Curfman McInnes   if (mdn->size == 1) {
826064f8208SBarry Smith     ierr =  MatNorm(mdn->A,type,nrm);CHKERRQ(ierr);
8273501a2bdSLois Curfman McInnes   } else {
8283501a2bdSLois Curfman McInnes     if (type == NORM_FROBENIUS) {
829d0f46423SBarry Smith       for (i=0; i<mdn->A->cmap->n*mdn->A->rmap->n; i++) {
830329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
8313501a2bdSLois Curfman McInnes       }
832b2566f29SBarry Smith       ierr = MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
8338f1a2a5eSBarry Smith       *nrm = PetscSqrtReal(*nrm);
834dc0b31edSSatish Balay       ierr = PetscLogFlops(2.0*mdn->A->cmap->n*mdn->A->rmap->n);CHKERRQ(ierr);
8353a40ed3dSBarry Smith     } else if (type == NORM_1) {
836329f5518SBarry Smith       PetscReal *tmp,*tmp2;
837580bdb30SBarry Smith       ierr = PetscCalloc2(A->cmap->N,&tmp,A->cmap->N,&tmp2);CHKERRQ(ierr);
838064f8208SBarry Smith       *nrm = 0.0;
839637a0070SStefano Zampini       v    = av;
840d0f46423SBarry Smith       for (j=0; j<mdn->A->cmap->n; j++) {
841d0f46423SBarry Smith         for (i=0; i<mdn->A->rmap->n; i++) {
84267e560aaSBarry Smith           tmp[j] += PetscAbsScalar(*v);  v++;
8433501a2bdSLois Curfman McInnes         }
8443501a2bdSLois Curfman McInnes       }
845b2566f29SBarry Smith       ierr = MPIU_Allreduce(tmp,tmp2,A->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
846d0f46423SBarry Smith       for (j=0; j<A->cmap->N; j++) {
847064f8208SBarry Smith         if (tmp2[j] > *nrm) *nrm = tmp2[j];
8483501a2bdSLois Curfman McInnes       }
8498627564fSBarry Smith       ierr = PetscFree2(tmp,tmp2);CHKERRQ(ierr);
850d0f46423SBarry Smith       ierr = PetscLogFlops(A->cmap->n*A->rmap->n);CHKERRQ(ierr);
8513a40ed3dSBarry Smith     } else if (type == NORM_INFINITY) { /* max row norm */
852329f5518SBarry Smith       PetscReal ntemp;
8533501a2bdSLois Curfman McInnes       ierr = MatNorm(mdn->A,type,&ntemp);CHKERRQ(ierr);
854b2566f29SBarry Smith       ierr = MPIU_Allreduce(&ntemp,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
855ce94432eSBarry Smith     } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"No support for two norm");
8563501a2bdSLois Curfman McInnes   }
857637a0070SStefano Zampini   ierr = MatDenseRestoreArrayRead(mdn->A,&av);CHKERRQ(ierr);
8583a40ed3dSBarry Smith   PetscFunctionReturn(0);
8593501a2bdSLois Curfman McInnes }
8603501a2bdSLois Curfman McInnes 
861fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIDense(Mat A,MatReuse reuse,Mat *matout)
8623501a2bdSLois Curfman McInnes {
8633501a2bdSLois Curfman McInnes   Mat_MPIDense   *a    = (Mat_MPIDense*)A->data;
8643501a2bdSLois Curfman McInnes   Mat            B;
865d0f46423SBarry Smith   PetscInt       M = A->rmap->N,N = A->cmap->N,m,n,*rwork,rstart = A->rmap->rstart;
8666849ba73SBarry Smith   PetscErrorCode ierr;
867637a0070SStefano Zampini   PetscInt       j,i,lda;
86887828ca2SBarry Smith   PetscScalar    *v;
8693501a2bdSLois Curfman McInnes 
8703a40ed3dSBarry Smith   PetscFunctionBegin;
871cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) {
872ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
873d0f46423SBarry Smith     ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr);
8747adad957SLisandro Dalcin     ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr);
8750298fd71SBarry Smith     ierr = MatMPIDenseSetPreallocation(B,NULL);CHKERRQ(ierr);
876637a0070SStefano Zampini   } else B = *matout;
8773501a2bdSLois Curfman McInnes 
878637a0070SStefano Zampini   m    = a->A->rmap->n; n = a->A->cmap->n;
879637a0070SStefano Zampini   ierr = MatDenseGetArrayRead(a->A,(const PetscScalar**)&v);CHKERRQ(ierr);
880637a0070SStefano Zampini   ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr);
881785e854fSJed Brown   ierr = PetscMalloc1(m,&rwork);CHKERRQ(ierr);
8823501a2bdSLois Curfman McInnes   for (i=0; i<m; i++) rwork[i] = rstart + i;
8831acff37aSSatish Balay   for (j=0; j<n; j++) {
8843501a2bdSLois Curfman McInnes     ierr = MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES);CHKERRQ(ierr);
885637a0070SStefano Zampini     v   += lda;
8863501a2bdSLois Curfman McInnes   }
887637a0070SStefano Zampini   ierr = MatDenseRestoreArrayRead(a->A,(const PetscScalar**)&v);CHKERRQ(ierr);
888606d414cSSatish Balay   ierr = PetscFree(rwork);CHKERRQ(ierr);
8896d4a8577SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
8906d4a8577SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
891cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) {
8923501a2bdSLois Curfman McInnes     *matout = B;
8933501a2bdSLois Curfman McInnes   } else {
89428be2f97SBarry Smith     ierr = MatHeaderMerge(A,&B);CHKERRQ(ierr);
8953501a2bdSLois Curfman McInnes   }
8963a40ed3dSBarry Smith   PetscFunctionReturn(0);
897096963f5SLois Curfman McInnes }
898096963f5SLois Curfman McInnes 
8996849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat*);
90052c5f739Sprj- PETSC_INTERN PetscErrorCode MatScale_MPIDense(Mat,PetscScalar);
9018965ea79SLois Curfman McInnes 
9024994cf47SJed Brown PetscErrorCode MatSetUp_MPIDense(Mat A)
903273d9f13SBarry Smith {
904dfbe8321SBarry Smith   PetscErrorCode ierr;
905273d9f13SBarry Smith 
906273d9f13SBarry Smith   PetscFunctionBegin;
90718992e5dSStefano Zampini   ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr);
90818992e5dSStefano Zampini   ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr);
90918992e5dSStefano Zampini   if (!A->preallocated) {
910273d9f13SBarry Smith     ierr = MatMPIDenseSetPreallocation(A,0);CHKERRQ(ierr);
91118992e5dSStefano Zampini   }
912273d9f13SBarry Smith   PetscFunctionReturn(0);
913273d9f13SBarry Smith }
914273d9f13SBarry Smith 
915488007eeSBarry Smith PetscErrorCode MatAXPY_MPIDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str)
916488007eeSBarry Smith {
917488007eeSBarry Smith   PetscErrorCode ierr;
918488007eeSBarry Smith   Mat_MPIDense   *A = (Mat_MPIDense*)Y->data, *B = (Mat_MPIDense*)X->data;
919488007eeSBarry Smith 
920488007eeSBarry Smith   PetscFunctionBegin;
921488007eeSBarry Smith   ierr = MatAXPY(A->A,alpha,B->A,str);CHKERRQ(ierr);
922488007eeSBarry Smith   PetscFunctionReturn(0);
923488007eeSBarry Smith }
924488007eeSBarry Smith 
9257087cfbeSBarry Smith PetscErrorCode MatConjugate_MPIDense(Mat mat)
926ba337c44SJed Brown {
927ba337c44SJed Brown   Mat_MPIDense   *a = (Mat_MPIDense*)mat->data;
928ba337c44SJed Brown   PetscErrorCode ierr;
929ba337c44SJed Brown 
930ba337c44SJed Brown   PetscFunctionBegin;
931ba337c44SJed Brown   ierr = MatConjugate(a->A);CHKERRQ(ierr);
932ba337c44SJed Brown   PetscFunctionReturn(0);
933ba337c44SJed Brown }
934ba337c44SJed Brown 
935ba337c44SJed Brown PetscErrorCode MatRealPart_MPIDense(Mat A)
936ba337c44SJed Brown {
937ba337c44SJed Brown   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
938ba337c44SJed Brown   PetscErrorCode ierr;
939ba337c44SJed Brown 
940ba337c44SJed Brown   PetscFunctionBegin;
941ba337c44SJed Brown   ierr = MatRealPart(a->A);CHKERRQ(ierr);
942ba337c44SJed Brown   PetscFunctionReturn(0);
943ba337c44SJed Brown }
944ba337c44SJed Brown 
945ba337c44SJed Brown PetscErrorCode MatImaginaryPart_MPIDense(Mat A)
946ba337c44SJed Brown {
947ba337c44SJed Brown   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
948ba337c44SJed Brown   PetscErrorCode ierr;
949ba337c44SJed Brown 
950ba337c44SJed Brown   PetscFunctionBegin;
951ba337c44SJed Brown   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
952ba337c44SJed Brown   PetscFunctionReturn(0);
953ba337c44SJed Brown }
954ba337c44SJed Brown 
95549a6ff4bSBarry Smith static PetscErrorCode MatGetColumnVector_MPIDense(Mat A,Vec v,PetscInt col)
95649a6ff4bSBarry Smith {
95749a6ff4bSBarry Smith   PetscErrorCode ierr;
958637a0070SStefano Zampini   Mat_MPIDense   *a = (Mat_MPIDense*) A->data;
95949a6ff4bSBarry Smith 
96049a6ff4bSBarry Smith   PetscFunctionBegin;
961637a0070SStefano Zampini   if (!a->A) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Missing local matrix");
962637a0070SStefano Zampini   if (!a->A->ops->getcolumnvector) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Missing get column operation");
963637a0070SStefano Zampini   ierr = (*a->A->ops->getcolumnvector)(a->A,v,col);CHKERRQ(ierr);
96449a6ff4bSBarry Smith   PetscFunctionReturn(0);
96549a6ff4bSBarry Smith }
96649a6ff4bSBarry Smith 
96752c5f739Sprj- PETSC_INTERN PetscErrorCode MatGetColumnNorms_SeqDense(Mat,NormType,PetscReal*);
96852c5f739Sprj- 
9690716a85fSBarry Smith PetscErrorCode MatGetColumnNorms_MPIDense(Mat A,NormType type,PetscReal *norms)
9700716a85fSBarry Smith {
9710716a85fSBarry Smith   PetscErrorCode ierr;
9720716a85fSBarry Smith   PetscInt       i,n;
9730716a85fSBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*) A->data;
9740716a85fSBarry Smith   PetscReal      *work;
9750716a85fSBarry Smith 
9760716a85fSBarry Smith   PetscFunctionBegin;
9770298fd71SBarry Smith   ierr = MatGetSize(A,NULL,&n);CHKERRQ(ierr);
978785e854fSJed Brown   ierr = PetscMalloc1(n,&work);CHKERRQ(ierr);
9790716a85fSBarry Smith   ierr = MatGetColumnNorms_SeqDense(a->A,type,work);CHKERRQ(ierr);
9800716a85fSBarry Smith   if (type == NORM_2) {
9810716a85fSBarry Smith     for (i=0; i<n; i++) work[i] *= work[i];
9820716a85fSBarry Smith   }
9830716a85fSBarry Smith   if (type == NORM_INFINITY) {
984b2566f29SBarry Smith     ierr = MPIU_Allreduce(work,norms,n,MPIU_REAL,MPIU_MAX,A->hdr.comm);CHKERRQ(ierr);
9850716a85fSBarry Smith   } else {
986b2566f29SBarry Smith     ierr = MPIU_Allreduce(work,norms,n,MPIU_REAL,MPIU_SUM,A->hdr.comm);CHKERRQ(ierr);
9870716a85fSBarry Smith   }
9880716a85fSBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
9890716a85fSBarry Smith   if (type == NORM_2) {
9908f1a2a5eSBarry Smith     for (i=0; i<n; i++) norms[i] = PetscSqrtReal(norms[i]);
9910716a85fSBarry Smith   }
9920716a85fSBarry Smith   PetscFunctionReturn(0);
9930716a85fSBarry Smith }
9940716a85fSBarry Smith 
995637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA)
9966947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVec_MPIDenseCUDA(Mat A,PetscInt col,Vec *v)
9976947451fSStefano Zampini {
9986947451fSStefano Zampini   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
9996947451fSStefano Zampini   PetscErrorCode ierr;
10006947451fSStefano Zampini   PetscInt       lda;
10016947451fSStefano Zampini 
10026947451fSStefano Zampini   PetscFunctionBegin;
10036947451fSStefano Zampini   if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first");
10046947451fSStefano Zampini   if (!a->cvec) {
10056947451fSStefano Zampini     ierr = VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr);
10066947451fSStefano Zampini   }
10076947451fSStefano Zampini   a->vecinuse = col + 1;
10086947451fSStefano Zampini   ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr);
10096947451fSStefano Zampini   ierr = MatDenseCUDAGetArray(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr);
10106947451fSStefano Zampini   ierr = VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr);
10116947451fSStefano Zampini   *v   = a->cvec;
10126947451fSStefano Zampini   PetscFunctionReturn(0);
10136947451fSStefano Zampini }
10146947451fSStefano Zampini 
10156947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVec_MPIDenseCUDA(Mat A,PetscInt col,Vec *v)
10166947451fSStefano Zampini {
10176947451fSStefano Zampini   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
10186947451fSStefano Zampini   PetscErrorCode ierr;
10196947451fSStefano Zampini 
10206947451fSStefano Zampini   PetscFunctionBegin;
10216947451fSStefano Zampini   if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec first");
10226947451fSStefano Zampini   if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector");
10236947451fSStefano Zampini   a->vecinuse = 0;
10246947451fSStefano Zampini   ierr = MatDenseCUDARestoreArray(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr);
10256947451fSStefano Zampini   ierr = VecCUDAResetArray(a->cvec);CHKERRQ(ierr);
10266947451fSStefano Zampini   *v   = NULL;
10276947451fSStefano Zampini   PetscFunctionReturn(0);
10286947451fSStefano Zampini }
10296947451fSStefano Zampini 
10306947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecRead_MPIDenseCUDA(Mat A,PetscInt col,Vec *v)
10316947451fSStefano Zampini {
10326947451fSStefano Zampini   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
10336947451fSStefano Zampini   PetscInt       lda;
10346947451fSStefano Zampini   PetscErrorCode ierr;
10356947451fSStefano Zampini 
10366947451fSStefano Zampini   PetscFunctionBegin;
10376947451fSStefano Zampini   if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first");
10386947451fSStefano Zampini   if (!a->cvec) {
10396947451fSStefano Zampini     ierr = VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr);
10406947451fSStefano Zampini   }
10416947451fSStefano Zampini   a->vecinuse = col + 1;
10426947451fSStefano Zampini   ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr);
10436947451fSStefano Zampini   ierr = MatDenseCUDAGetArrayRead(a->A,&a->ptrinuse);CHKERRQ(ierr);
10446947451fSStefano Zampini   ierr = VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr);
10456947451fSStefano Zampini   ierr = VecLockReadPush(a->cvec);CHKERRQ(ierr);
10466947451fSStefano Zampini   *v   = a->cvec;
10476947451fSStefano Zampini   PetscFunctionReturn(0);
10486947451fSStefano Zampini }
10496947451fSStefano Zampini 
10506947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecRead_MPIDenseCUDA(Mat A,PetscInt col,Vec *v)
10516947451fSStefano Zampini {
10526947451fSStefano Zampini   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
10536947451fSStefano Zampini   PetscErrorCode ierr;
10546947451fSStefano Zampini 
10556947451fSStefano Zampini   PetscFunctionBegin;
10566947451fSStefano Zampini   if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec first");
10576947451fSStefano Zampini   if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector");
10586947451fSStefano Zampini   a->vecinuse = 0;
10596947451fSStefano Zampini   ierr = MatDenseCUDARestoreArrayRead(a->A,&a->ptrinuse);CHKERRQ(ierr);
10606947451fSStefano Zampini   ierr = VecLockReadPop(a->cvec);CHKERRQ(ierr);
10616947451fSStefano Zampini   ierr = VecCUDAResetArray(a->cvec);CHKERRQ(ierr);
10626947451fSStefano Zampini   *v   = NULL;
10636947451fSStefano Zampini   PetscFunctionReturn(0);
10646947451fSStefano Zampini }
10656947451fSStefano Zampini 
10666947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecWrite_MPIDenseCUDA(Mat A,PetscInt col,Vec *v)
10676947451fSStefano Zampini {
10686947451fSStefano Zampini   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
10696947451fSStefano Zampini   PetscErrorCode ierr;
10706947451fSStefano Zampini   PetscInt       lda;
10716947451fSStefano Zampini 
10726947451fSStefano Zampini   PetscFunctionBegin;
10736947451fSStefano Zampini   if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first");
10746947451fSStefano Zampini   if (!a->cvec) {
10756947451fSStefano Zampini     ierr = VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr);
10766947451fSStefano Zampini   }
10776947451fSStefano Zampini   a->vecinuse = col + 1;
10786947451fSStefano Zampini   ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr);
10796947451fSStefano Zampini   ierr = MatDenseCUDAGetArrayWrite(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr);
10806947451fSStefano Zampini   ierr = VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr);
10816947451fSStefano Zampini   *v   = a->cvec;
10826947451fSStefano Zampini   PetscFunctionReturn(0);
10836947451fSStefano Zampini }
10846947451fSStefano Zampini 
10856947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDenseCUDA(Mat A,PetscInt col,Vec *v)
10866947451fSStefano Zampini {
10876947451fSStefano Zampini   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
10886947451fSStefano Zampini   PetscErrorCode ierr;
10896947451fSStefano Zampini 
10906947451fSStefano Zampini   PetscFunctionBegin;
10916947451fSStefano Zampini   if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec first");
10926947451fSStefano Zampini   if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector");
10936947451fSStefano Zampini   a->vecinuse = 0;
10946947451fSStefano Zampini   ierr = MatDenseCUDARestoreArrayWrite(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr);
10956947451fSStefano Zampini   ierr = VecCUDAResetArray(a->cvec);CHKERRQ(ierr);
10966947451fSStefano Zampini   *v   = NULL;
10976947451fSStefano Zampini   PetscFunctionReturn(0);
10986947451fSStefano Zampini }
10996947451fSStefano Zampini 
1100637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAPlaceArray_MPIDenseCUDA(Mat A, const PetscScalar *a)
1101637a0070SStefano Zampini {
1102637a0070SStefano Zampini   Mat_MPIDense   *l = (Mat_MPIDense*) A->data;
1103637a0070SStefano Zampini   PetscErrorCode ierr;
1104637a0070SStefano Zampini 
1105637a0070SStefano Zampini   PetscFunctionBegin;
11066947451fSStefano Zampini   if (l->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first");
1107637a0070SStefano Zampini   ierr = MatDenseCUDAPlaceArray(l->A,a);CHKERRQ(ierr);
1108637a0070SStefano Zampini   PetscFunctionReturn(0);
1109637a0070SStefano Zampini }
1110637a0070SStefano Zampini 
1111637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAResetArray_MPIDenseCUDA(Mat A)
1112637a0070SStefano Zampini {
1113637a0070SStefano Zampini   Mat_MPIDense   *l = (Mat_MPIDense*) A->data;
1114637a0070SStefano Zampini   PetscErrorCode ierr;
1115637a0070SStefano Zampini 
1116637a0070SStefano Zampini   PetscFunctionBegin;
11176947451fSStefano Zampini   if (l->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first");
1118637a0070SStefano Zampini   ierr = MatDenseCUDAResetArray(l->A);CHKERRQ(ierr);
1119637a0070SStefano Zampini   PetscFunctionReturn(0);
1120637a0070SStefano Zampini }
1121637a0070SStefano Zampini 
1122d5ea218eSStefano Zampini static PetscErrorCode MatDenseCUDAReplaceArray_MPIDenseCUDA(Mat A, const PetscScalar *a)
1123d5ea218eSStefano Zampini {
1124d5ea218eSStefano Zampini   Mat_MPIDense   *l = (Mat_MPIDense*) A->data;
1125d5ea218eSStefano Zampini   PetscErrorCode ierr;
1126d5ea218eSStefano Zampini 
1127d5ea218eSStefano Zampini   PetscFunctionBegin;
1128d5ea218eSStefano Zampini   if (l->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first");
1129d5ea218eSStefano Zampini   ierr = MatDenseCUDAReplaceArray(l->A,a);CHKERRQ(ierr);
1130d5ea218eSStefano Zampini   PetscFunctionReturn(0);
1131d5ea218eSStefano Zampini }
1132d5ea218eSStefano Zampini 
1133637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArrayWrite_MPIDenseCUDA(Mat A, PetscScalar **a)
1134637a0070SStefano Zampini {
1135637a0070SStefano Zampini   Mat_MPIDense   *l = (Mat_MPIDense*) A->data;
1136637a0070SStefano Zampini   PetscErrorCode ierr;
1137637a0070SStefano Zampini 
1138637a0070SStefano Zampini   PetscFunctionBegin;
1139637a0070SStefano Zampini   ierr = MatDenseCUDAGetArrayWrite(l->A,a);CHKERRQ(ierr);
1140637a0070SStefano Zampini   PetscFunctionReturn(0);
1141637a0070SStefano Zampini }
1142637a0070SStefano Zampini 
1143637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArrayWrite_MPIDenseCUDA(Mat A, PetscScalar **a)
1144637a0070SStefano Zampini {
1145637a0070SStefano Zampini   Mat_MPIDense   *l = (Mat_MPIDense*) A->data;
1146637a0070SStefano Zampini   PetscErrorCode ierr;
1147637a0070SStefano Zampini 
1148637a0070SStefano Zampini   PetscFunctionBegin;
1149637a0070SStefano Zampini   ierr = MatDenseCUDARestoreArrayWrite(l->A,a);CHKERRQ(ierr);
1150637a0070SStefano Zampini   PetscFunctionReturn(0);
1151637a0070SStefano Zampini }
1152637a0070SStefano Zampini 
1153637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArrayRead_MPIDenseCUDA(Mat A, const PetscScalar **a)
1154637a0070SStefano Zampini {
1155637a0070SStefano Zampini   Mat_MPIDense   *l = (Mat_MPIDense*) A->data;
1156637a0070SStefano Zampini   PetscErrorCode ierr;
1157637a0070SStefano Zampini 
1158637a0070SStefano Zampini   PetscFunctionBegin;
1159637a0070SStefano Zampini   ierr = MatDenseCUDAGetArrayRead(l->A,a);CHKERRQ(ierr);
1160637a0070SStefano Zampini   PetscFunctionReturn(0);
1161637a0070SStefano Zampini }
1162637a0070SStefano Zampini 
1163637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArrayRead_MPIDenseCUDA(Mat A, const PetscScalar **a)
1164637a0070SStefano Zampini {
1165637a0070SStefano Zampini   Mat_MPIDense   *l = (Mat_MPIDense*) A->data;
1166637a0070SStefano Zampini   PetscErrorCode ierr;
1167637a0070SStefano Zampini 
1168637a0070SStefano Zampini   PetscFunctionBegin;
1169637a0070SStefano Zampini   ierr = MatDenseCUDARestoreArrayRead(l->A,a);CHKERRQ(ierr);
1170637a0070SStefano Zampini   PetscFunctionReturn(0);
1171637a0070SStefano Zampini }
1172637a0070SStefano Zampini 
1173637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArray_MPIDenseCUDA(Mat A, PetscScalar **a)
1174637a0070SStefano Zampini {
1175637a0070SStefano Zampini   Mat_MPIDense   *l = (Mat_MPIDense*) A->data;
1176637a0070SStefano Zampini   PetscErrorCode ierr;
1177637a0070SStefano Zampini 
1178637a0070SStefano Zampini   PetscFunctionBegin;
1179637a0070SStefano Zampini   ierr = MatDenseCUDAGetArray(l->A,a);CHKERRQ(ierr);
1180637a0070SStefano Zampini   PetscFunctionReturn(0);
1181637a0070SStefano Zampini }
1182637a0070SStefano Zampini 
1183637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArray_MPIDenseCUDA(Mat A, PetscScalar **a)
1184637a0070SStefano Zampini {
1185637a0070SStefano Zampini   Mat_MPIDense   *l = (Mat_MPIDense*) A->data;
1186637a0070SStefano Zampini   PetscErrorCode ierr;
1187637a0070SStefano Zampini 
1188637a0070SStefano Zampini   PetscFunctionBegin;
1189637a0070SStefano Zampini   ierr = MatDenseCUDARestoreArray(l->A,a);CHKERRQ(ierr);
1190637a0070SStefano Zampini   PetscFunctionReturn(0);
1191637a0070SStefano Zampini }
1192637a0070SStefano Zampini 
11936947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecWrite_MPIDense(Mat,PetscInt,Vec*);
11946947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecRead_MPIDense(Mat,PetscInt,Vec*);
11956947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVec_MPIDense(Mat,PetscInt,Vec*);
11966947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDense(Mat,PetscInt,Vec*);
11976947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecRead_MPIDense(Mat,PetscInt,Vec*);
11986947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVec_MPIDense(Mat,PetscInt,Vec*);
11996947451fSStefano Zampini 
1200637a0070SStefano Zampini static PetscErrorCode MatBindToCPU_MPIDenseCUDA(Mat mat,PetscBool bind)
1201637a0070SStefano Zampini {
1202637a0070SStefano Zampini   Mat_MPIDense   *d = (Mat_MPIDense*)mat->data;
1203637a0070SStefano Zampini   PetscErrorCode ierr;
1204637a0070SStefano Zampini 
1205637a0070SStefano Zampini   PetscFunctionBegin;
12066947451fSStefano Zampini   if (d->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first");
1207637a0070SStefano Zampini   if (d->A) {
1208637a0070SStefano Zampini     ierr = MatBindToCPU(d->A,bind);CHKERRQ(ierr);
1209637a0070SStefano Zampini   }
1210637a0070SStefano Zampini   mat->boundtocpu = bind;
12116947451fSStefano Zampini   if (!bind) {
12126947451fSStefano Zampini     PetscBool iscuda;
12136947451fSStefano Zampini 
12146947451fSStefano Zampini     ierr = PetscObjectTypeCompare((PetscObject)d->cvec,VECMPICUDA,&iscuda);CHKERRQ(ierr);
12156947451fSStefano Zampini     if (!iscuda) {
12166947451fSStefano Zampini       ierr = VecDestroy(&d->cvec);CHKERRQ(ierr);
12176947451fSStefano Zampini     }
12186947451fSStefano Zampini     ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDenseCUDA);CHKERRQ(ierr);
12196947451fSStefano Zampini     ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDenseCUDA);CHKERRQ(ierr);
12206947451fSStefano Zampini     ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDenseCUDA);CHKERRQ(ierr);
12216947451fSStefano Zampini     ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDenseCUDA);CHKERRQ(ierr);
12226947451fSStefano Zampini     ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDenseCUDA);CHKERRQ(ierr);
12236947451fSStefano Zampini     ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDenseCUDA);CHKERRQ(ierr);
12246947451fSStefano Zampini   } else {
12256947451fSStefano Zampini     ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDense);CHKERRQ(ierr);
12266947451fSStefano Zampini     ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDense);CHKERRQ(ierr);
12276947451fSStefano Zampini     ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDense);CHKERRQ(ierr);
12286947451fSStefano Zampini     ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDense);CHKERRQ(ierr);
12296947451fSStefano Zampini     ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDense);CHKERRQ(ierr);
12306947451fSStefano Zampini     ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDense);CHKERRQ(ierr);
12316947451fSStefano Zampini   }
1232637a0070SStefano Zampini   PetscFunctionReturn(0);
1233637a0070SStefano Zampini }
1234637a0070SStefano Zampini 
1235637a0070SStefano Zampini PetscErrorCode MatMPIDenseCUDASetPreallocation(Mat A, PetscScalar *d_data)
1236637a0070SStefano Zampini {
1237637a0070SStefano Zampini   Mat_MPIDense   *d = (Mat_MPIDense*)A->data;
1238637a0070SStefano Zampini   PetscErrorCode ierr;
1239637a0070SStefano Zampini   PetscBool      iscuda;
1240637a0070SStefano Zampini 
1241637a0070SStefano Zampini   PetscFunctionBegin;
1242d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
1243637a0070SStefano Zampini   ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIDENSECUDA,&iscuda);CHKERRQ(ierr);
1244637a0070SStefano Zampini   if (!iscuda) PetscFunctionReturn(0);
1245637a0070SStefano Zampini   ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr);
1246637a0070SStefano Zampini   ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr);
1247637a0070SStefano Zampini   if (!d->A) {
1248637a0070SStefano Zampini     ierr = MatCreate(PETSC_COMM_SELF,&d->A);CHKERRQ(ierr);
1249637a0070SStefano Zampini     ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)d->A);CHKERRQ(ierr);
1250637a0070SStefano Zampini     ierr = MatSetSizes(d->A,A->rmap->n,A->cmap->N,A->rmap->n,A->cmap->N);CHKERRQ(ierr);
1251637a0070SStefano Zampini   }
1252637a0070SStefano Zampini   ierr = MatSetType(d->A,MATSEQDENSECUDA);CHKERRQ(ierr);
1253637a0070SStefano Zampini   ierr = MatSeqDenseCUDASetPreallocation(d->A,d_data);CHKERRQ(ierr);
1254637a0070SStefano Zampini   A->preallocated = PETSC_TRUE;
1255637a0070SStefano Zampini   PetscFunctionReturn(0);
1256637a0070SStefano Zampini }
1257637a0070SStefano Zampini #endif
1258637a0070SStefano Zampini 
125973a71a0fSBarry Smith static PetscErrorCode MatSetRandom_MPIDense(Mat x,PetscRandom rctx)
126073a71a0fSBarry Smith {
126173a71a0fSBarry Smith   Mat_MPIDense   *d = (Mat_MPIDense*)x->data;
126273a71a0fSBarry Smith   PetscErrorCode ierr;
126373a71a0fSBarry Smith 
126473a71a0fSBarry Smith   PetscFunctionBegin;
1265637a0070SStefano Zampini   ierr = MatSetRandom(d->A,rctx);CHKERRQ(ierr);
126673a71a0fSBarry Smith   PetscFunctionReturn(0);
126773a71a0fSBarry Smith }
126873a71a0fSBarry Smith 
126952c5f739Sprj- PETSC_INTERN PetscErrorCode MatMatMultNumeric_MPIDense(Mat A,Mat,Mat);
1270fd4e9aacSBarry Smith 
12713b49f96aSBarry Smith static PetscErrorCode MatMissingDiagonal_MPIDense(Mat A,PetscBool  *missing,PetscInt *d)
12723b49f96aSBarry Smith {
12733b49f96aSBarry Smith   PetscFunctionBegin;
12743b49f96aSBarry Smith   *missing = PETSC_FALSE;
12753b49f96aSBarry Smith   PetscFunctionReturn(0);
12763b49f96aSBarry Smith }
12773b49f96aSBarry Smith 
12784222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat,Mat,PetscReal,Mat);
1279cc48ffa7SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat,Mat,Mat);
1280cc48ffa7SToby Isaac 
12818965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/
128209dc0095SBarry Smith static struct _MatOps MatOps_Values = { MatSetValues_MPIDense,
128309dc0095SBarry Smith                                         MatGetRow_MPIDense,
128409dc0095SBarry Smith                                         MatRestoreRow_MPIDense,
128509dc0095SBarry Smith                                         MatMult_MPIDense,
128697304618SKris Buschelman                                 /*  4*/ MatMultAdd_MPIDense,
12877c922b88SBarry Smith                                         MatMultTranspose_MPIDense,
12887c922b88SBarry Smith                                         MatMultTransposeAdd_MPIDense,
12898965ea79SLois Curfman McInnes                                         0,
129009dc0095SBarry Smith                                         0,
129109dc0095SBarry Smith                                         0,
129297304618SKris Buschelman                                 /* 10*/ 0,
129309dc0095SBarry Smith                                         0,
129409dc0095SBarry Smith                                         0,
129509dc0095SBarry Smith                                         0,
129609dc0095SBarry Smith                                         MatTranspose_MPIDense,
129797304618SKris Buschelman                                 /* 15*/ MatGetInfo_MPIDense,
12986e4ee0c6SHong Zhang                                         MatEqual_MPIDense,
129909dc0095SBarry Smith                                         MatGetDiagonal_MPIDense,
13005b2fa520SLois Curfman McInnes                                         MatDiagonalScale_MPIDense,
130109dc0095SBarry Smith                                         MatNorm_MPIDense,
130297304618SKris Buschelman                                 /* 20*/ MatAssemblyBegin_MPIDense,
130309dc0095SBarry Smith                                         MatAssemblyEnd_MPIDense,
130409dc0095SBarry Smith                                         MatSetOption_MPIDense,
130509dc0095SBarry Smith                                         MatZeroEntries_MPIDense,
1306d519adbfSMatthew Knepley                                 /* 24*/ MatZeroRows_MPIDense,
1307919b68f7SBarry Smith                                         0,
130801b82886SBarry Smith                                         0,
130901b82886SBarry Smith                                         0,
131001b82886SBarry Smith                                         0,
13114994cf47SJed Brown                                 /* 29*/ MatSetUp_MPIDense,
1312273d9f13SBarry Smith                                         0,
131309dc0095SBarry Smith                                         0,
1314c56a70eeSBarry Smith                                         MatGetDiagonalBlock_MPIDense,
13158c778c55SBarry Smith                                         0,
1316d519adbfSMatthew Knepley                                 /* 34*/ MatDuplicate_MPIDense,
131709dc0095SBarry Smith                                         0,
131809dc0095SBarry Smith                                         0,
131909dc0095SBarry Smith                                         0,
132009dc0095SBarry Smith                                         0,
1321d519adbfSMatthew Knepley                                 /* 39*/ MatAXPY_MPIDense,
13227dae84e0SHong Zhang                                         MatCreateSubMatrices_MPIDense,
132309dc0095SBarry Smith                                         0,
132409dc0095SBarry Smith                                         MatGetValues_MPIDense,
132509dc0095SBarry Smith                                         0,
1326d519adbfSMatthew Knepley                                 /* 44*/ 0,
132709dc0095SBarry Smith                                         MatScale_MPIDense,
13287d68702bSBarry Smith                                         MatShift_Basic,
132909dc0095SBarry Smith                                         0,
133009dc0095SBarry Smith                                         0,
133173a71a0fSBarry Smith                                 /* 49*/ MatSetRandom_MPIDense,
133209dc0095SBarry Smith                                         0,
133309dc0095SBarry Smith                                         0,
133409dc0095SBarry Smith                                         0,
133509dc0095SBarry Smith                                         0,
1336d519adbfSMatthew Knepley                                 /* 54*/ 0,
133709dc0095SBarry Smith                                         0,
133809dc0095SBarry Smith                                         0,
133909dc0095SBarry Smith                                         0,
134009dc0095SBarry Smith                                         0,
13417dae84e0SHong Zhang                                 /* 59*/ MatCreateSubMatrix_MPIDense,
1342b9b97703SBarry Smith                                         MatDestroy_MPIDense,
1343b9b97703SBarry Smith                                         MatView_MPIDense,
1344357abbc8SBarry Smith                                         0,
134597304618SKris Buschelman                                         0,
1346d519adbfSMatthew Knepley                                 /* 64*/ 0,
134797304618SKris Buschelman                                         0,
134897304618SKris Buschelman                                         0,
134997304618SKris Buschelman                                         0,
135097304618SKris Buschelman                                         0,
1351d519adbfSMatthew Knepley                                 /* 69*/ 0,
135297304618SKris Buschelman                                         0,
135397304618SKris Buschelman                                         0,
135497304618SKris Buschelman                                         0,
135597304618SKris Buschelman                                         0,
1356d519adbfSMatthew Knepley                                 /* 74*/ 0,
135797304618SKris Buschelman                                         0,
135897304618SKris Buschelman                                         0,
135997304618SKris Buschelman                                         0,
136097304618SKris Buschelman                                         0,
1361d519adbfSMatthew Knepley                                 /* 79*/ 0,
136297304618SKris Buschelman                                         0,
136397304618SKris Buschelman                                         0,
136497304618SKris Buschelman                                         0,
13655bba2384SShri Abhyankar                                 /* 83*/ MatLoad_MPIDense,
1366865e5f61SKris Buschelman                                         0,
1367865e5f61SKris Buschelman                                         0,
1368865e5f61SKris Buschelman                                         0,
1369865e5f61SKris Buschelman                                         0,
1370865e5f61SKris Buschelman                                         0,
13714222ddf1SHong Zhang                                 /* 89*/ 0,
13724222ddf1SHong Zhang                                         0,
1373fd4e9aacSBarry Smith                                         MatMatMultNumeric_MPIDense,
13742fbe02b9SBarry Smith                                         0,
1375ba337c44SJed Brown                                         0,
1376d519adbfSMatthew Knepley                                 /* 94*/ 0,
13774222ddf1SHong Zhang                                         0,
13784222ddf1SHong Zhang                                         0,
1379cc48ffa7SToby Isaac                                         MatMatTransposeMultNumeric_MPIDense_MPIDense,
1380ba337c44SJed Brown                                         0,
13814222ddf1SHong Zhang                                 /* 99*/ MatProductSetFromOptions_MPIDense,
1382ba337c44SJed Brown                                         0,
1383ba337c44SJed Brown                                         0,
1384ba337c44SJed Brown                                         MatConjugate_MPIDense,
1385ba337c44SJed Brown                                         0,
1386ba337c44SJed Brown                                 /*104*/ 0,
1387ba337c44SJed Brown                                         MatRealPart_MPIDense,
1388ba337c44SJed Brown                                         MatImaginaryPart_MPIDense,
138986d161a7SShri Abhyankar                                         0,
139086d161a7SShri Abhyankar                                         0,
139186d161a7SShri Abhyankar                                 /*109*/ 0,
139286d161a7SShri Abhyankar                                         0,
139386d161a7SShri Abhyankar                                         0,
139449a6ff4bSBarry Smith                                         MatGetColumnVector_MPIDense,
13953b49f96aSBarry Smith                                         MatMissingDiagonal_MPIDense,
139686d161a7SShri Abhyankar                                 /*114*/ 0,
139786d161a7SShri Abhyankar                                         0,
139886d161a7SShri Abhyankar                                         0,
139986d161a7SShri Abhyankar                                         0,
140086d161a7SShri Abhyankar                                         0,
140186d161a7SShri Abhyankar                                 /*119*/ 0,
140286d161a7SShri Abhyankar                                         0,
140386d161a7SShri Abhyankar                                         0,
14040716a85fSBarry Smith                                         0,
14050716a85fSBarry Smith                                         0,
14060716a85fSBarry Smith                                 /*124*/ 0,
14073964eb88SJed Brown                                         MatGetColumnNorms_MPIDense,
14083964eb88SJed Brown                                         0,
14093964eb88SJed Brown                                         0,
14103964eb88SJed Brown                                         0,
14113964eb88SJed Brown                                 /*129*/ 0,
14124222ddf1SHong Zhang                                         0,
14134222ddf1SHong Zhang                                         0,
1414cb20be35SHong Zhang                                         MatTransposeMatMultNumeric_MPIDense_MPIDense,
14153964eb88SJed Brown                                         0,
14163964eb88SJed Brown                                 /*134*/ 0,
14173964eb88SJed Brown                                         0,
14183964eb88SJed Brown                                         0,
14193964eb88SJed Brown                                         0,
14203964eb88SJed Brown                                         0,
14213964eb88SJed Brown                                 /*139*/ 0,
1422f9426fe0SMark Adams                                         0,
142394e2cb23SJakub Kruzik                                         0,
142494e2cb23SJakub Kruzik                                         0,
142594e2cb23SJakub Kruzik                                         0,
14264222ddf1SHong Zhang                                         MatCreateMPIMatConcatenateSeqMat_MPIDense,
14274222ddf1SHong Zhang                                 /*145*/ 0,
14284222ddf1SHong Zhang                                         0,
14294222ddf1SHong Zhang                                         0
1430ba337c44SJed Brown };
14318965ea79SLois Curfman McInnes 
14327087cfbeSBarry Smith PetscErrorCode  MatMPIDenseSetPreallocation_MPIDense(Mat mat,PetscScalar *data)
1433a23d5eceSKris Buschelman {
1434637a0070SStefano Zampini   Mat_MPIDense   *a = (Mat_MPIDense*)mat->data;
1435637a0070SStefano Zampini   PetscBool      iscuda;
1436dfbe8321SBarry Smith   PetscErrorCode ierr;
1437a23d5eceSKris Buschelman 
1438a23d5eceSKris Buschelman   PetscFunctionBegin;
143934ef9618SShri Abhyankar   ierr = PetscLayoutSetUp(mat->rmap);CHKERRQ(ierr);
144034ef9618SShri Abhyankar   ierr = PetscLayoutSetUp(mat->cmap);CHKERRQ(ierr);
1441637a0070SStefano Zampini   if (!a->A) {
1442f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&a->A);CHKERRQ(ierr);
14433bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr);
1444637a0070SStefano Zampini     ierr = MatSetSizes(a->A,mat->rmap->n,mat->cmap->N,mat->rmap->n,mat->cmap->N);CHKERRQ(ierr);
1445637a0070SStefano Zampini   }
1446637a0070SStefano Zampini   ierr = PetscObjectTypeCompare((PetscObject)mat,MATMPIDENSECUDA,&iscuda);CHKERRQ(ierr);
1447637a0070SStefano Zampini   ierr = MatSetType(a->A,iscuda ? MATSEQDENSECUDA : MATSEQDENSE);CHKERRQ(ierr);
1448637a0070SStefano Zampini   ierr = MatSeqDenseSetPreallocation(a->A,data);CHKERRQ(ierr);
1449637a0070SStefano Zampini   mat->preallocated = PETSC_TRUE;
1450a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1451a23d5eceSKris Buschelman }
1452a23d5eceSKris Buschelman 
145365b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
1454cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIDense_Elemental(Mat A, MatType newtype,MatReuse reuse,Mat *newmat)
14558baccfbdSHong Zhang {
14568ea901baSHong Zhang   Mat            mat_elemental;
14578ea901baSHong Zhang   PetscErrorCode ierr;
145832d7a744SHong Zhang   PetscScalar    *v;
145932d7a744SHong Zhang   PetscInt       m=A->rmap->n,N=A->cmap->N,rstart=A->rmap->rstart,i,*rows,*cols;
14608ea901baSHong Zhang 
14618baccfbdSHong Zhang   PetscFunctionBegin;
1462378336b6SHong Zhang   if (reuse == MAT_REUSE_MATRIX) {
1463378336b6SHong Zhang     mat_elemental = *newmat;
1464378336b6SHong Zhang     ierr = MatZeroEntries(*newmat);CHKERRQ(ierr);
1465378336b6SHong Zhang   } else {
1466378336b6SHong Zhang     ierr = MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental);CHKERRQ(ierr);
1467378336b6SHong Zhang     ierr = MatSetSizes(mat_elemental,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
1468378336b6SHong Zhang     ierr = MatSetType(mat_elemental,MATELEMENTAL);CHKERRQ(ierr);
1469378336b6SHong Zhang     ierr = MatSetUp(mat_elemental);CHKERRQ(ierr);
147032d7a744SHong Zhang     ierr = MatSetOption(mat_elemental,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr);
1471378336b6SHong Zhang   }
1472378336b6SHong Zhang 
147332d7a744SHong Zhang   ierr = PetscMalloc2(m,&rows,N,&cols);CHKERRQ(ierr);
147432d7a744SHong Zhang   for (i=0; i<N; i++) cols[i] = i;
147532d7a744SHong Zhang   for (i=0; i<m; i++) rows[i] = rstart + i;
14768ea901baSHong Zhang 
1477637a0070SStefano Zampini   /* PETSc-Elemental interface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */
147832d7a744SHong Zhang   ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr);
147932d7a744SHong Zhang   ierr = MatSetValues(mat_elemental,m,rows,N,cols,v,ADD_VALUES);CHKERRQ(ierr);
14808ea901baSHong Zhang   ierr = MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
14818ea901baSHong Zhang   ierr = MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
148232d7a744SHong Zhang   ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr);
148332d7a744SHong Zhang   ierr = PetscFree2(rows,cols);CHKERRQ(ierr);
14848ea901baSHong Zhang 
1485511c6705SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
148628be2f97SBarry Smith     ierr = MatHeaderReplace(A,&mat_elemental);CHKERRQ(ierr);
14878ea901baSHong Zhang   } else {
14888ea901baSHong Zhang     *newmat = mat_elemental;
14898ea901baSHong Zhang   }
14908baccfbdSHong Zhang   PetscFunctionReturn(0);
14918baccfbdSHong Zhang }
149265b80a83SHong Zhang #endif
14938baccfbdSHong Zhang 
1494af53bab2SHong Zhang static PetscErrorCode MatDenseGetColumn_MPIDense(Mat A,PetscInt col,PetscScalar **vals)
149586aefd0dSHong Zhang {
149686aefd0dSHong Zhang   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
149786aefd0dSHong Zhang   PetscErrorCode ierr;
149886aefd0dSHong Zhang 
149986aefd0dSHong Zhang   PetscFunctionBegin;
150086aefd0dSHong Zhang   ierr = MatDenseGetColumn(mat->A,col,vals);CHKERRQ(ierr);
150186aefd0dSHong Zhang   PetscFunctionReturn(0);
150286aefd0dSHong Zhang }
150386aefd0dSHong Zhang 
1504af53bab2SHong Zhang static PetscErrorCode MatDenseRestoreColumn_MPIDense(Mat A,PetscScalar **vals)
150586aefd0dSHong Zhang {
150686aefd0dSHong Zhang   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
150786aefd0dSHong Zhang   PetscErrorCode ierr;
150886aefd0dSHong Zhang 
150986aefd0dSHong Zhang   PetscFunctionBegin;
151086aefd0dSHong Zhang   ierr = MatDenseRestoreColumn(mat->A,vals);CHKERRQ(ierr);
151186aefd0dSHong Zhang   PetscFunctionReturn(0);
151286aefd0dSHong Zhang }
151386aefd0dSHong Zhang 
151494e2cb23SJakub Kruzik PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIDense(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat)
151594e2cb23SJakub Kruzik {
151694e2cb23SJakub Kruzik   PetscErrorCode ierr;
151794e2cb23SJakub Kruzik   Mat_MPIDense   *mat;
151894e2cb23SJakub Kruzik   PetscInt       m,nloc,N;
151994e2cb23SJakub Kruzik 
152094e2cb23SJakub Kruzik   PetscFunctionBegin;
152194e2cb23SJakub Kruzik   ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr);
152294e2cb23SJakub Kruzik   ierr = MatGetLocalSize(inmat,NULL,&nloc);CHKERRQ(ierr);
152394e2cb23SJakub Kruzik   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
152494e2cb23SJakub Kruzik     PetscInt sum;
152594e2cb23SJakub Kruzik 
152694e2cb23SJakub Kruzik     if (n == PETSC_DECIDE) {
152794e2cb23SJakub Kruzik       ierr = PetscSplitOwnership(comm,&n,&N);CHKERRQ(ierr);
152894e2cb23SJakub Kruzik     }
152994e2cb23SJakub Kruzik     /* Check sum(n) = N */
153094e2cb23SJakub Kruzik     ierr = MPIU_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr);
153194e2cb23SJakub Kruzik     if (sum != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns %D != global columns %D",sum,N);
153294e2cb23SJakub Kruzik 
153394e2cb23SJakub Kruzik     ierr = MatCreateDense(comm,m,n,PETSC_DETERMINE,N,NULL,outmat);CHKERRQ(ierr);
153494e2cb23SJakub Kruzik   }
153594e2cb23SJakub Kruzik 
153694e2cb23SJakub Kruzik   /* numeric phase */
153794e2cb23SJakub Kruzik   mat = (Mat_MPIDense*)(*outmat)->data;
153894e2cb23SJakub Kruzik   ierr = MatCopy(inmat,mat->A,SAME_NONZERO_PATTERN);CHKERRQ(ierr);
153994e2cb23SJakub Kruzik   ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
154094e2cb23SJakub Kruzik   ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
154194e2cb23SJakub Kruzik   PetscFunctionReturn(0);
154294e2cb23SJakub Kruzik }
154394e2cb23SJakub Kruzik 
1544637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA)
1545637a0070SStefano Zampini PetscErrorCode MatConvert_MPIDenseCUDA_MPIDense(Mat M,MatType type,MatReuse reuse,Mat *newmat)
1546637a0070SStefano Zampini {
1547637a0070SStefano Zampini   Mat            B;
1548637a0070SStefano Zampini   Mat_MPIDense   *m;
1549637a0070SStefano Zampini   PetscErrorCode ierr;
1550637a0070SStefano Zampini 
1551637a0070SStefano Zampini   PetscFunctionBegin;
1552637a0070SStefano Zampini   if (reuse == MAT_INITIAL_MATRIX) {
1553637a0070SStefano Zampini     ierr = MatDuplicate(M,MAT_COPY_VALUES,newmat);CHKERRQ(ierr);
1554637a0070SStefano Zampini   } else if (reuse == MAT_REUSE_MATRIX) {
1555637a0070SStefano Zampini     ierr = MatCopy(M,*newmat,SAME_NONZERO_PATTERN);CHKERRQ(ierr);
1556637a0070SStefano Zampini   }
1557637a0070SStefano Zampini 
1558637a0070SStefano Zampini   B    = *newmat;
1559637a0070SStefano Zampini   ierr = MatBindToCPU_MPIDenseCUDA(B,PETSC_TRUE);CHKERRQ(ierr);
1560637a0070SStefano Zampini   ierr = PetscFree(B->defaultvectype);CHKERRQ(ierr);
1561637a0070SStefano Zampini   ierr = PetscStrallocpy(VECSTANDARD,&B->defaultvectype);CHKERRQ(ierr);
1562637a0070SStefano Zampini   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIDENSE);CHKERRQ(ierr);
1563637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpidensecuda_mpidense_C",NULL);CHKERRQ(ierr);
1564637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaij_mpidensecuda_C",NULL);CHKERRQ(ierr);
1565637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaij_C",NULL);CHKERRQ(ierr);
1566637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArray_C",NULL);CHKERRQ(ierr);
1567637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayRead_C",NULL);CHKERRQ(ierr);
1568637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayWrite_C",NULL);CHKERRQ(ierr);
1569637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArray_C",NULL);CHKERRQ(ierr);
1570637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayRead_C",NULL);CHKERRQ(ierr);
1571637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayWrite_C",NULL);CHKERRQ(ierr);
1572637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAPlaceArray_C",NULL);CHKERRQ(ierr);
1573637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAResetArray_C",NULL);CHKERRQ(ierr);
1574d5ea218eSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAReplaceArray_C",NULL);CHKERRQ(ierr);
1575637a0070SStefano Zampini   m    = (Mat_MPIDense*)(B)->data;
1576637a0070SStefano Zampini   if (m->A) {
1577637a0070SStefano Zampini     ierr = MatConvert(m->A,MATSEQDENSE,MAT_INPLACE_MATRIX,&m->A);CHKERRQ(ierr);
1578637a0070SStefano Zampini     ierr = MatSetUpMultiply_MPIDense(B);CHKERRQ(ierr);
1579637a0070SStefano Zampini   }
1580637a0070SStefano Zampini   B->ops->bindtocpu = NULL;
1581637a0070SStefano Zampini   B->offloadmask    = PETSC_OFFLOAD_CPU;
1582637a0070SStefano Zampini   PetscFunctionReturn(0);
1583637a0070SStefano Zampini }
1584637a0070SStefano Zampini 
1585637a0070SStefano Zampini PetscErrorCode MatConvert_MPIDense_MPIDenseCUDA(Mat M,MatType type,MatReuse reuse,Mat *newmat)
1586637a0070SStefano Zampini {
1587637a0070SStefano Zampini   Mat            B;
1588637a0070SStefano Zampini   Mat_MPIDense   *m;
1589637a0070SStefano Zampini   PetscErrorCode ierr;
1590637a0070SStefano Zampini 
1591637a0070SStefano Zampini   PetscFunctionBegin;
1592637a0070SStefano Zampini   if (reuse == MAT_INITIAL_MATRIX) {
1593637a0070SStefano Zampini     ierr = MatDuplicate(M,MAT_COPY_VALUES,newmat);CHKERRQ(ierr);
1594637a0070SStefano Zampini   } else if (reuse == MAT_REUSE_MATRIX) {
1595637a0070SStefano Zampini     ierr = MatCopy(M,*newmat,SAME_NONZERO_PATTERN);CHKERRQ(ierr);
1596637a0070SStefano Zampini   }
1597637a0070SStefano Zampini 
1598637a0070SStefano Zampini   B    = *newmat;
1599637a0070SStefano Zampini   ierr = PetscFree(B->defaultvectype);CHKERRQ(ierr);
1600637a0070SStefano Zampini   ierr = PetscStrallocpy(VECCUDA,&B->defaultvectype);CHKERRQ(ierr);
1601637a0070SStefano Zampini   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIDENSECUDA);CHKERRQ(ierr);
1602637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpidensecuda_mpidense_C",            MatConvert_MPIDenseCUDA_MPIDense);CHKERRQ(ierr);
1603637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaij_mpidensecuda_C",MatProductSetFromOptions_MPIAIJ_MPIDense);CHKERRQ(ierr);
1604637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaij_C",MatProductSetFromOptions_MPIDense_MPIAIJ);CHKERRQ(ierr);
1605637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArray_C",                        MatDenseCUDAGetArray_MPIDenseCUDA);CHKERRQ(ierr);
1606637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayRead_C",                    MatDenseCUDAGetArrayRead_MPIDenseCUDA);CHKERRQ(ierr);
1607637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayWrite_C",                   MatDenseCUDAGetArrayWrite_MPIDenseCUDA);CHKERRQ(ierr);
1608637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArray_C",                    MatDenseCUDARestoreArray_MPIDenseCUDA);CHKERRQ(ierr);
1609637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayRead_C",                MatDenseCUDARestoreArrayRead_MPIDenseCUDA);CHKERRQ(ierr);
1610637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayWrite_C",               MatDenseCUDARestoreArrayWrite_MPIDenseCUDA);CHKERRQ(ierr);
1611637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAPlaceArray_C",                      MatDenseCUDAPlaceArray_MPIDenseCUDA);CHKERRQ(ierr);
1612637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAResetArray_C",                      MatDenseCUDAResetArray_MPIDenseCUDA);CHKERRQ(ierr);
1613d5ea218eSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAReplaceArray_C",                    MatDenseCUDAReplaceArray_MPIDenseCUDA);CHKERRQ(ierr);
1614637a0070SStefano Zampini   m    = (Mat_MPIDense*)(B)->data;
1615637a0070SStefano Zampini   if (m->A) {
1616637a0070SStefano Zampini     ierr = MatConvert(m->A,MATSEQDENSECUDA,MAT_INPLACE_MATRIX,&m->A);CHKERRQ(ierr);
1617637a0070SStefano Zampini     ierr = MatSetUpMultiply_MPIDense(B);CHKERRQ(ierr);
1618637a0070SStefano Zampini     B->offloadmask = PETSC_OFFLOAD_BOTH;
1619637a0070SStefano Zampini   } else {
1620637a0070SStefano Zampini     B->offloadmask = PETSC_OFFLOAD_UNALLOCATED;
1621637a0070SStefano Zampini   }
1622637a0070SStefano Zampini   ierr = MatBindToCPU_MPIDenseCUDA(B,PETSC_FALSE);CHKERRQ(ierr);
1623637a0070SStefano Zampini 
1624637a0070SStefano Zampini   B->ops->bindtocpu = MatBindToCPU_MPIDenseCUDA;
1625637a0070SStefano Zampini   PetscFunctionReturn(0);
1626637a0070SStefano Zampini }
1627637a0070SStefano Zampini #endif
1628637a0070SStefano Zampini 
16296947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVec_MPIDense(Mat A,PetscInt col,Vec *v)
16306947451fSStefano Zampini {
16316947451fSStefano Zampini   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
16326947451fSStefano Zampini   PetscErrorCode ierr;
16336947451fSStefano Zampini   PetscInt       lda;
16346947451fSStefano Zampini 
16356947451fSStefano Zampini   PetscFunctionBegin;
16366947451fSStefano Zampini   if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first");
16376947451fSStefano Zampini   if (!a->cvec) {
16386947451fSStefano Zampini     ierr = VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr);
16396947451fSStefano Zampini   }
16406947451fSStefano Zampini   a->vecinuse = col + 1;
16416947451fSStefano Zampini   ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr);
16426947451fSStefano Zampini   ierr = MatDenseGetArray(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr);
16436947451fSStefano Zampini   ierr = VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr);
16446947451fSStefano Zampini   *v   = a->cvec;
16456947451fSStefano Zampini   PetscFunctionReturn(0);
16466947451fSStefano Zampini }
16476947451fSStefano Zampini 
16486947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVec_MPIDense(Mat A,PetscInt col,Vec *v)
16496947451fSStefano Zampini {
16506947451fSStefano Zampini   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
16516947451fSStefano Zampini   PetscErrorCode ierr;
16526947451fSStefano Zampini 
16536947451fSStefano Zampini   PetscFunctionBegin;
16546947451fSStefano Zampini   if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec first");
16556947451fSStefano Zampini   if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector");
16566947451fSStefano Zampini   a->vecinuse = 0;
16576947451fSStefano Zampini   ierr = MatDenseRestoreArray(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr);
16586947451fSStefano Zampini   ierr = VecResetArray(a->cvec);CHKERRQ(ierr);
16596947451fSStefano Zampini   *v   = NULL;
16606947451fSStefano Zampini   PetscFunctionReturn(0);
16616947451fSStefano Zampini }
16626947451fSStefano Zampini 
16636947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecRead_MPIDense(Mat A,PetscInt col,Vec *v)
16646947451fSStefano Zampini {
16656947451fSStefano Zampini   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
16666947451fSStefano Zampini   PetscErrorCode ierr;
16676947451fSStefano Zampini   PetscInt       lda;
16686947451fSStefano Zampini 
16696947451fSStefano Zampini   PetscFunctionBegin;
16706947451fSStefano Zampini   if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first");
16716947451fSStefano Zampini   if (!a->cvec) {
16726947451fSStefano Zampini     ierr = VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr);
16736947451fSStefano Zampini   }
16746947451fSStefano Zampini   a->vecinuse = col + 1;
16756947451fSStefano Zampini   ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr);
16766947451fSStefano Zampini   ierr = MatDenseGetArrayRead(a->A,&a->ptrinuse);CHKERRQ(ierr);
16776947451fSStefano Zampini   ierr = VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr);
16786947451fSStefano Zampini   ierr = VecLockReadPush(a->cvec);CHKERRQ(ierr);
16796947451fSStefano Zampini   *v   = a->cvec;
16806947451fSStefano Zampini   PetscFunctionReturn(0);
16816947451fSStefano Zampini }
16826947451fSStefano Zampini 
16836947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecRead_MPIDense(Mat A,PetscInt col,Vec *v)
16846947451fSStefano Zampini {
16856947451fSStefano Zampini   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
16866947451fSStefano Zampini   PetscErrorCode ierr;
16876947451fSStefano Zampini 
16886947451fSStefano Zampini   PetscFunctionBegin;
16896947451fSStefano Zampini   if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec first");
16906947451fSStefano Zampini   if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector");
16916947451fSStefano Zampini   a->vecinuse = 0;
16926947451fSStefano Zampini   ierr = MatDenseRestoreArrayRead(a->A,&a->ptrinuse);CHKERRQ(ierr);
16936947451fSStefano Zampini   ierr = VecLockReadPop(a->cvec);CHKERRQ(ierr);
16946947451fSStefano Zampini   ierr = VecResetArray(a->cvec);CHKERRQ(ierr);
16956947451fSStefano Zampini   *v   = NULL;
16966947451fSStefano Zampini   PetscFunctionReturn(0);
16976947451fSStefano Zampini }
16986947451fSStefano Zampini 
16996947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecWrite_MPIDense(Mat A,PetscInt col,Vec *v)
17006947451fSStefano Zampini {
17016947451fSStefano Zampini   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
17026947451fSStefano Zampini   PetscErrorCode ierr;
17036947451fSStefano Zampini   PetscInt       lda;
17046947451fSStefano Zampini 
17056947451fSStefano Zampini   PetscFunctionBegin;
17066947451fSStefano Zampini   if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first");
17076947451fSStefano Zampini   if (!a->cvec) {
17086947451fSStefano Zampini     ierr = VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr);
17096947451fSStefano Zampini   }
17106947451fSStefano Zampini   a->vecinuse = col + 1;
17116947451fSStefano Zampini   ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr);
17126947451fSStefano Zampini   ierr = MatDenseGetArrayWrite(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr);
17136947451fSStefano Zampini   ierr = VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr);
17146947451fSStefano Zampini   *v   = a->cvec;
17156947451fSStefano Zampini   PetscFunctionReturn(0);
17166947451fSStefano Zampini }
17176947451fSStefano Zampini 
17186947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDense(Mat A,PetscInt col,Vec *v)
17196947451fSStefano Zampini {
17206947451fSStefano Zampini   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
17216947451fSStefano Zampini   PetscErrorCode ierr;
17226947451fSStefano Zampini 
17236947451fSStefano Zampini   PetscFunctionBegin;
17246947451fSStefano Zampini   if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec first");
17256947451fSStefano Zampini   if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector");
17266947451fSStefano Zampini   a->vecinuse = 0;
17276947451fSStefano Zampini   ierr = MatDenseRestoreArrayWrite(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr);
17286947451fSStefano Zampini   ierr = VecResetArray(a->cvec);CHKERRQ(ierr);
17296947451fSStefano Zampini   *v   = NULL;
17306947451fSStefano Zampini   PetscFunctionReturn(0);
17316947451fSStefano Zampini }
17326947451fSStefano Zampini 
17338cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIDense(Mat mat)
1734273d9f13SBarry Smith {
1735273d9f13SBarry Smith   Mat_MPIDense   *a;
1736dfbe8321SBarry Smith   PetscErrorCode ierr;
1737273d9f13SBarry Smith 
1738273d9f13SBarry Smith   PetscFunctionBegin;
1739b00a9115SJed Brown   ierr      = PetscNewLog(mat,&a);CHKERRQ(ierr);
1740b0a32e0cSBarry Smith   mat->data = (void*)a;
1741273d9f13SBarry Smith   ierr      = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1742273d9f13SBarry Smith 
1743273d9f13SBarry Smith   mat->insertmode = NOT_SET_VALUES;
1744ce94432eSBarry Smith   ierr            = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&a->rank);CHKERRQ(ierr);
1745ce94432eSBarry Smith   ierr            = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&a->size);CHKERRQ(ierr);
1746273d9f13SBarry Smith 
1747273d9f13SBarry Smith   /* build cache for off array entries formed */
1748273d9f13SBarry Smith   a->donotstash = PETSC_FALSE;
17492205254eSKarl Rupp 
1750ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)mat),1,&mat->stash);CHKERRQ(ierr);
1751273d9f13SBarry Smith 
1752273d9f13SBarry Smith   /* stuff used for matrix vector multiply */
1753273d9f13SBarry Smith   a->lvec        = 0;
1754273d9f13SBarry Smith   a->Mvctx       = 0;
1755273d9f13SBarry Smith   a->roworiented = PETSC_TRUE;
1756273d9f13SBarry Smith 
175749a6ff4bSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",MatDenseGetLDA_MPIDense);CHKERRQ(ierr);
1758bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",MatDenseGetArray_MPIDense);CHKERRQ(ierr);
17598572280aSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",MatDenseRestoreArray_MPIDense);CHKERRQ(ierr);
17608572280aSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",MatDenseGetArrayRead_MPIDense);CHKERRQ(ierr);
17618572280aSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",MatDenseRestoreArrayRead_MPIDense);CHKERRQ(ierr);
17626947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayWrite_C",MatDenseGetArrayWrite_MPIDense);CHKERRQ(ierr);
17636947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayWrite_C",MatDenseRestoreArrayWrite_MPIDense);CHKERRQ(ierr);
1764d3042a70SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",MatDensePlaceArray_MPIDense);CHKERRQ(ierr);
1765d3042a70SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",MatDenseResetArray_MPIDense);CHKERRQ(ierr);
1766d5ea218eSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseReplaceArray_C",MatDenseReplaceArray_MPIDense);CHKERRQ(ierr);
17676947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDense);CHKERRQ(ierr);
17686947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDense);CHKERRQ(ierr);
17696947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDense);CHKERRQ(ierr);
17706947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDense);CHKERRQ(ierr);
17716947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDense);CHKERRQ(ierr);
17726947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDense);CHKERRQ(ierr);
17738baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
17748baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",MatConvert_MPIDense_Elemental);CHKERRQ(ierr);
17758baccfbdSHong Zhang #endif
1776637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA)
1777637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_mpidensecuda_C",MatConvert_MPIDense_MPIDenseCUDA);CHKERRQ(ierr);
1778637a0070SStefano Zampini #endif
1779bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",MatMPIDenseSetPreallocation_MPIDense);CHKERRQ(ierr);
17804222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaij_mpidense_C",MatProductSetFromOptions_MPIAIJ_MPIDense);CHKERRQ(ierr);
17814222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaij_C",MatProductSetFromOptions_MPIDense_MPIAIJ);CHKERRQ(ierr);
1782bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C",MatMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr);
1783bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C",MatMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr);
178452c5f739Sprj-   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_nest_mpidense_C",MatMatMultSymbolic_Nest_Dense);CHKERRQ(ierr);
178552c5f739Sprj-   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_nest_mpidense_C",MatMatMultNumeric_Nest_Dense);CHKERRQ(ierr);
17868949adfdSHong Zhang 
17878949adfdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultSymbolic_mpiaij_mpidense_C",MatTransposeMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr);
17888949adfdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultNumeric_mpiaij_mpidense_C",MatTransposeMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr);
1789af53bab2SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",MatDenseGetColumn_MPIDense);CHKERRQ(ierr);
1790af53bab2SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",MatDenseRestoreColumn_MPIDense);CHKERRQ(ierr);
179138aed534SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)mat,MATMPIDENSE);CHKERRQ(ierr);
1792273d9f13SBarry Smith   PetscFunctionReturn(0);
1793273d9f13SBarry Smith }
1794273d9f13SBarry Smith 
1795209238afSKris Buschelman /*MC
1796637a0070SStefano Zampini    MATMPIDENSECUDA - MATMPIDENSECUDA = "mpidensecuda" - A matrix type to be used for distributed dense matrices on GPUs.
1797637a0070SStefano Zampini 
1798637a0070SStefano Zampini    Options Database Keys:
1799637a0070SStefano Zampini . -mat_type mpidensecuda - sets the matrix type to "mpidensecuda" during a call to MatSetFromOptions()
1800637a0070SStefano Zampini 
1801637a0070SStefano Zampini   Level: beginner
1802637a0070SStefano Zampini 
1803637a0070SStefano Zampini .seealso:
1804637a0070SStefano Zampini 
1805637a0070SStefano Zampini M*/
1806637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA)
1807637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreate_MPIDenseCUDA(Mat B)
1808637a0070SStefano Zampini {
1809637a0070SStefano Zampini   PetscErrorCode ierr;
1810637a0070SStefano Zampini 
1811637a0070SStefano Zampini   PetscFunctionBegin;
1812637a0070SStefano Zampini   ierr = MatCreate_MPIDense(B);CHKERRQ(ierr);
1813637a0070SStefano Zampini   ierr = MatConvert_MPIDense_MPIDenseCUDA(B,MATMPIDENSECUDA,MAT_INPLACE_MATRIX,&B);CHKERRQ(ierr);
1814637a0070SStefano Zampini   PetscFunctionReturn(0);
1815637a0070SStefano Zampini }
1816637a0070SStefano Zampini #endif
1817637a0070SStefano Zampini 
1818637a0070SStefano Zampini /*MC
1819002d173eSKris Buschelman    MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices.
1820209238afSKris Buschelman 
1821209238afSKris Buschelman    This matrix type is identical to MATSEQDENSE when constructed with a single process communicator,
1822209238afSKris Buschelman    and MATMPIDENSE otherwise.
1823209238afSKris Buschelman 
1824209238afSKris Buschelman    Options Database Keys:
1825209238afSKris Buschelman . -mat_type dense - sets the matrix type to "dense" during a call to MatSetFromOptions()
1826209238afSKris Buschelman 
1827209238afSKris Buschelman   Level: beginner
1828209238afSKris Buschelman 
182901b82886SBarry Smith 
18306947451fSStefano Zampini .seealso: MATSEQDENSE,MATMPIDENSE,MATDENSECUDA
18316947451fSStefano Zampini M*/
18326947451fSStefano Zampini 
18336947451fSStefano Zampini /*MC
18346947451fSStefano Zampini    MATDENSECUDA - MATDENSECUDA = "densecuda" - A matrix type to be used for dense matrices on GPUs.
18356947451fSStefano Zampini 
18366947451fSStefano Zampini    This matrix type is identical to MATSEQDENSECUDA when constructed with a single process communicator,
18376947451fSStefano Zampini    and MATMPIDENSECUDA otherwise.
18386947451fSStefano Zampini 
18396947451fSStefano Zampini    Options Database Keys:
18406947451fSStefano Zampini . -mat_type densecuda - sets the matrix type to "densecuda" during a call to MatSetFromOptions()
18416947451fSStefano Zampini 
18426947451fSStefano Zampini   Level: beginner
18436947451fSStefano Zampini 
18446947451fSStefano Zampini .seealso: MATSEQDENSECUDA,MATMPIDENSECUDA,MATDENSE
1845209238afSKris Buschelman M*/
1846209238afSKris Buschelman 
1847273d9f13SBarry Smith /*@C
1848273d9f13SBarry Smith    MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries
1849273d9f13SBarry Smith 
1850273d9f13SBarry Smith    Not collective
1851273d9f13SBarry Smith 
1852273d9f13SBarry Smith    Input Parameters:
18531c4f3114SJed Brown .  B - the matrix
18540298fd71SBarry Smith -  data - optional location of matrix data.  Set data=NULL for PETSc
1855273d9f13SBarry Smith    to control all matrix memory allocation.
1856273d9f13SBarry Smith 
1857273d9f13SBarry Smith    Notes:
1858273d9f13SBarry Smith    The dense format is fully compatible with standard Fortran 77
1859273d9f13SBarry Smith    storage by columns.
1860273d9f13SBarry Smith 
1861273d9f13SBarry Smith    The data input variable is intended primarily for Fortran programmers
1862273d9f13SBarry Smith    who wish to allocate their own matrix memory space.  Most users should
18630298fd71SBarry Smith    set data=NULL.
1864273d9f13SBarry Smith 
1865273d9f13SBarry Smith    Level: intermediate
1866273d9f13SBarry Smith 
1867273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues()
1868273d9f13SBarry Smith @*/
18691c4f3114SJed Brown PetscErrorCode  MatMPIDenseSetPreallocation(Mat B,PetscScalar *data)
1870273d9f13SBarry Smith {
18714ac538c5SBarry Smith   PetscErrorCode ierr;
1872273d9f13SBarry Smith 
1873273d9f13SBarry Smith   PetscFunctionBegin;
1874d5ea218eSStefano Zampini   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
18751c4f3114SJed Brown   ierr = PetscTryMethod(B,"MatMPIDenseSetPreallocation_C",(Mat,PetscScalar*),(B,data));CHKERRQ(ierr);
1876273d9f13SBarry Smith   PetscFunctionReturn(0);
1877273d9f13SBarry Smith }
1878273d9f13SBarry Smith 
1879d3042a70SBarry Smith /*@
1880637a0070SStefano Zampini    MatDensePlaceArray - Allows one to replace the array in a dense matrix with an
1881d3042a70SBarry Smith    array provided by the user. This is useful to avoid copying an array
1882d3042a70SBarry Smith    into a matrix
1883d3042a70SBarry Smith 
1884d3042a70SBarry Smith    Not Collective
1885d3042a70SBarry Smith 
1886d3042a70SBarry Smith    Input Parameters:
1887d3042a70SBarry Smith +  mat - the matrix
1888d3042a70SBarry Smith -  array - the array in column major order
1889d3042a70SBarry Smith 
1890d3042a70SBarry Smith    Notes:
1891d3042a70SBarry Smith    You can return to the original array with a call to MatDenseResetArray(). The user is responsible for freeing this array; it will not be
1892d3042a70SBarry Smith    freed when the matrix is destroyed.
1893d3042a70SBarry Smith 
1894d3042a70SBarry Smith    Level: developer
1895d3042a70SBarry Smith 
1896d3042a70SBarry Smith .seealso: MatDenseGetArray(), MatDenseResetArray(), VecPlaceArray(), VecGetArray(), VecRestoreArray(), VecReplaceArray(), VecResetArray()
1897d3042a70SBarry Smith 
1898d3042a70SBarry Smith @*/
1899637a0070SStefano Zampini PetscErrorCode  MatDensePlaceArray(Mat mat,const PetscScalar *array)
1900d3042a70SBarry Smith {
1901d3042a70SBarry Smith   PetscErrorCode ierr;
1902637a0070SStefano Zampini 
1903d3042a70SBarry Smith   PetscFunctionBegin;
1904d5ea218eSStefano Zampini   PetscValidHeaderSpecific(mat,MAT_CLASSID,1);
1905d3042a70SBarry Smith   ierr = PetscUseMethod(mat,"MatDensePlaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr);
1906d3042a70SBarry Smith   ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr);
1907637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA)
1908637a0070SStefano Zampini   mat->offloadmask = PETSC_OFFLOAD_CPU;
1909637a0070SStefano Zampini #endif
1910d3042a70SBarry Smith   PetscFunctionReturn(0);
1911d3042a70SBarry Smith }
1912d3042a70SBarry Smith 
1913d3042a70SBarry Smith /*@
1914d3042a70SBarry Smith    MatDenseResetArray - Resets the matrix array to that it previously had before the call to MatDensePlaceArray()
1915d3042a70SBarry Smith 
1916d3042a70SBarry Smith    Not Collective
1917d3042a70SBarry Smith 
1918d3042a70SBarry Smith    Input Parameters:
1919d3042a70SBarry Smith .  mat - the matrix
1920d3042a70SBarry Smith 
1921d3042a70SBarry Smith    Notes:
1922d3042a70SBarry Smith    You can only call this after a call to MatDensePlaceArray()
1923d3042a70SBarry Smith 
1924d3042a70SBarry Smith    Level: developer
1925d3042a70SBarry Smith 
1926d3042a70SBarry Smith .seealso: MatDenseGetArray(), MatDensePlaceArray(), VecPlaceArray(), VecGetArray(), VecRestoreArray(), VecReplaceArray(), VecResetArray()
1927d3042a70SBarry Smith 
1928d3042a70SBarry Smith @*/
1929d3042a70SBarry Smith PetscErrorCode  MatDenseResetArray(Mat mat)
1930d3042a70SBarry Smith {
1931d3042a70SBarry Smith   PetscErrorCode ierr;
1932637a0070SStefano Zampini 
1933d3042a70SBarry Smith   PetscFunctionBegin;
1934d5ea218eSStefano Zampini   PetscValidHeaderSpecific(mat,MAT_CLASSID,1);
1935d3042a70SBarry Smith   ierr = PetscUseMethod(mat,"MatDenseResetArray_C",(Mat),(mat));CHKERRQ(ierr);
1936d3042a70SBarry Smith   ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr);
1937d3042a70SBarry Smith   PetscFunctionReturn(0);
1938d3042a70SBarry Smith }
1939d3042a70SBarry Smith 
1940d5ea218eSStefano Zampini /*@
1941d5ea218eSStefano Zampini    MatDenseReplaceArray - Allows one to replace the array in a dense matrix with an
1942d5ea218eSStefano Zampini    array provided by the user. This is useful to avoid copying an array
1943d5ea218eSStefano Zampini    into a matrix
1944d5ea218eSStefano Zampini 
1945d5ea218eSStefano Zampini    Not Collective
1946d5ea218eSStefano Zampini 
1947d5ea218eSStefano Zampini    Input Parameters:
1948d5ea218eSStefano Zampini +  mat - the matrix
1949d5ea218eSStefano Zampini -  array - the array in column major order
1950d5ea218eSStefano Zampini 
1951d5ea218eSStefano Zampini    Notes:
1952d5ea218eSStefano Zampini    The memory passed in MUST be obtained with PetscMalloc() and CANNOT be
1953d5ea218eSStefano Zampini    freed by the user. It will be freed when the matrix is destroyed.
1954d5ea218eSStefano Zampini 
1955d5ea218eSStefano Zampini    Level: developer
1956d5ea218eSStefano Zampini 
1957d5ea218eSStefano Zampini .seealso: MatDenseGetArray(), VecReplaceArray()
1958d5ea218eSStefano Zampini @*/
1959d5ea218eSStefano Zampini PetscErrorCode  MatDenseReplaceArray(Mat mat,const PetscScalar *array)
1960d5ea218eSStefano Zampini {
1961d5ea218eSStefano Zampini   PetscErrorCode ierr;
1962d5ea218eSStefano Zampini 
1963d5ea218eSStefano Zampini   PetscFunctionBegin;
1964d5ea218eSStefano Zampini   PetscValidHeaderSpecific(mat,MAT_CLASSID,1);
1965d5ea218eSStefano Zampini   ierr = PetscUseMethod(mat,"MatDenseReplaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr);
1966d5ea218eSStefano Zampini   ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr);
1967d5ea218eSStefano Zampini #if defined(PETSC_HAVE_CUDA)
1968d5ea218eSStefano Zampini   mat->offloadmask = PETSC_OFFLOAD_CPU;
1969d5ea218eSStefano Zampini #endif
1970d5ea218eSStefano Zampini   PetscFunctionReturn(0);
1971d5ea218eSStefano Zampini }
1972d5ea218eSStefano Zampini 
1973637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA)
19748965ea79SLois Curfman McInnes /*@C
1975637a0070SStefano Zampini    MatDenseCUDAPlaceArray - Allows one to replace the GPU array in a dense matrix with an
1976637a0070SStefano Zampini    array provided by the user. This is useful to avoid copying an array
1977637a0070SStefano Zampini    into a matrix
1978637a0070SStefano Zampini 
1979637a0070SStefano Zampini    Not Collective
1980637a0070SStefano Zampini 
1981637a0070SStefano Zampini    Input Parameters:
1982637a0070SStefano Zampini +  mat - the matrix
1983637a0070SStefano Zampini -  array - the array in column major order
1984637a0070SStefano Zampini 
1985637a0070SStefano Zampini    Notes:
1986637a0070SStefano Zampini    You can return to the original array with a call to MatDenseCUDAResetArray(). The user is responsible for freeing this array; it will not be
1987637a0070SStefano Zampini    freed when the matrix is destroyed. The array must have been allocated with cudaMalloc().
1988637a0070SStefano Zampini 
1989637a0070SStefano Zampini    Level: developer
1990637a0070SStefano Zampini 
1991637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDAResetArray()
1992637a0070SStefano Zampini @*/
1993637a0070SStefano Zampini PetscErrorCode  MatDenseCUDAPlaceArray(Mat mat,const PetscScalar *array)
1994637a0070SStefano Zampini {
1995637a0070SStefano Zampini   PetscErrorCode ierr;
1996637a0070SStefano Zampini 
1997637a0070SStefano Zampini   PetscFunctionBegin;
1998d5ea218eSStefano Zampini   PetscValidHeaderSpecific(mat,MAT_CLASSID,1);
1999637a0070SStefano Zampini   ierr = PetscUseMethod(mat,"MatDenseCUDAPlaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr);
2000637a0070SStefano Zampini   ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr);
2001637a0070SStefano Zampini   mat->offloadmask = PETSC_OFFLOAD_GPU;
2002637a0070SStefano Zampini   PetscFunctionReturn(0);
2003637a0070SStefano Zampini }
2004637a0070SStefano Zampini 
2005637a0070SStefano Zampini /*@C
2006637a0070SStefano Zampini    MatDenseCUDAResetArray - Resets the matrix array to that it previously had before the call to MatDenseCUDAPlaceArray()
2007637a0070SStefano Zampini 
2008637a0070SStefano Zampini    Not Collective
2009637a0070SStefano Zampini 
2010637a0070SStefano Zampini    Input Parameters:
2011637a0070SStefano Zampini .  mat - the matrix
2012637a0070SStefano Zampini 
2013637a0070SStefano Zampini    Notes:
2014637a0070SStefano Zampini    You can only call this after a call to MatDenseCUDAPlaceArray()
2015637a0070SStefano Zampini 
2016637a0070SStefano Zampini    Level: developer
2017637a0070SStefano Zampini 
2018637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDAPlaceArray()
2019637a0070SStefano Zampini 
2020637a0070SStefano Zampini @*/
2021637a0070SStefano Zampini PetscErrorCode  MatDenseCUDAResetArray(Mat mat)
2022637a0070SStefano Zampini {
2023637a0070SStefano Zampini   PetscErrorCode ierr;
2024637a0070SStefano Zampini 
2025637a0070SStefano Zampini   PetscFunctionBegin;
2026d5ea218eSStefano Zampini   PetscValidHeaderSpecific(mat,MAT_CLASSID,1);
2027637a0070SStefano Zampini   ierr = PetscUseMethod(mat,"MatDenseCUDAResetArray_C",(Mat),(mat));CHKERRQ(ierr);
2028637a0070SStefano Zampini   ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr);
2029637a0070SStefano Zampini   PetscFunctionReturn(0);
2030637a0070SStefano Zampini }
2031637a0070SStefano Zampini 
2032637a0070SStefano Zampini /*@C
2033d5ea218eSStefano Zampini    MatDenseCUDAReplaceArray - Allows one to replace the GPU array in a dense matrix with an
2034d5ea218eSStefano Zampini    array provided by the user. This is useful to avoid copying an array
2035d5ea218eSStefano Zampini    into a matrix
2036d5ea218eSStefano Zampini 
2037d5ea218eSStefano Zampini    Not Collective
2038d5ea218eSStefano Zampini 
2039d5ea218eSStefano Zampini    Input Parameters:
2040d5ea218eSStefano Zampini +  mat - the matrix
2041d5ea218eSStefano Zampini -  array - the array in column major order
2042d5ea218eSStefano Zampini 
2043d5ea218eSStefano Zampini    Notes:
2044d5ea218eSStefano Zampini    This permanently replaces the GPU array and frees the memory associated with the old GPU array.
2045d5ea218eSStefano Zampini    The memory passed in CANNOT be freed by the user. It will be freed
2046d5ea218eSStefano Zampini    when the matrix is destroyed. The array should respect the matrix leading dimension.
2047d5ea218eSStefano Zampini 
2048d5ea218eSStefano Zampini    Level: developer
2049d5ea218eSStefano Zampini 
2050d5ea218eSStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDAPlaceArray(), MatDenseCUDAResetArray()
2051d5ea218eSStefano Zampini @*/
2052d5ea218eSStefano Zampini PetscErrorCode  MatDenseCUDAReplaceArray(Mat mat,const PetscScalar *array)
2053d5ea218eSStefano Zampini {
2054d5ea218eSStefano Zampini   PetscErrorCode ierr;
2055d5ea218eSStefano Zampini 
2056d5ea218eSStefano Zampini   PetscFunctionBegin;
2057d5ea218eSStefano Zampini   PetscValidHeaderSpecific(mat,MAT_CLASSID,1);
2058d5ea218eSStefano Zampini   ierr = PetscUseMethod(mat,"MatDenseCUDAReplaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr);
2059d5ea218eSStefano Zampini   ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr);
2060d5ea218eSStefano Zampini   mat->offloadmask = PETSC_OFFLOAD_GPU;
2061d5ea218eSStefano Zampini   PetscFunctionReturn(0);
2062d5ea218eSStefano Zampini }
2063d5ea218eSStefano Zampini 
2064d5ea218eSStefano Zampini /*@C
2065637a0070SStefano Zampini    MatDenseCUDAGetArrayWrite - Provides write access to the CUDA buffer inside a dense matrix.
2066637a0070SStefano Zampini 
2067637a0070SStefano Zampini    Not Collective
2068637a0070SStefano Zampini 
2069637a0070SStefano Zampini    Input Parameters:
2070637a0070SStefano Zampini .  A - the matrix
2071637a0070SStefano Zampini 
2072637a0070SStefano Zampini    Output Parameters
2073637a0070SStefano Zampini .  array - the GPU array in column major order
2074637a0070SStefano Zampini 
2075637a0070SStefano Zampini    Notes:
2076637a0070SStefano Zampini    The data on the GPU may not be updated due to operations done on the CPU. If you need updated data, use MatDenseCUDAGetArray(). The array must be restored with MatDenseCUDARestoreArrayWrite() when no longer needed.
2077637a0070SStefano Zampini 
2078637a0070SStefano Zampini    Level: developer
2079637a0070SStefano Zampini 
2080637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayRead(), MatDenseCUDARestoreArrayRead()
2081637a0070SStefano Zampini @*/
2082637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArrayWrite(Mat A, PetscScalar **a)
2083637a0070SStefano Zampini {
2084637a0070SStefano Zampini   PetscErrorCode ierr;
2085637a0070SStefano Zampini 
2086637a0070SStefano Zampini   PetscFunctionBegin;
2087d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
2088637a0070SStefano Zampini   ierr = PetscUseMethod(A,"MatDenseCUDAGetArrayWrite_C",(Mat,PetscScalar**),(A,a));CHKERRQ(ierr);
2089637a0070SStefano Zampini   ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr);
2090637a0070SStefano Zampini   PetscFunctionReturn(0);
2091637a0070SStefano Zampini }
2092637a0070SStefano Zampini 
2093637a0070SStefano Zampini /*@C
2094637a0070SStefano Zampini    MatDenseCUDARestoreArrayWrite - Restore write access to the CUDA buffer inside a dense matrix previously obtained with MatDenseCUDAGetArrayWrite().
2095637a0070SStefano Zampini 
2096637a0070SStefano Zampini    Not Collective
2097637a0070SStefano Zampini 
2098637a0070SStefano Zampini    Input Parameters:
2099637a0070SStefano Zampini +  A - the matrix
2100637a0070SStefano Zampini -  array - the GPU array in column major order
2101637a0070SStefano Zampini 
2102637a0070SStefano Zampini    Notes:
2103637a0070SStefano Zampini 
2104637a0070SStefano Zampini    Level: developer
2105637a0070SStefano Zampini 
2106637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead(), MatDenseCUDAGetArrayRead()
2107637a0070SStefano Zampini @*/
2108637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArrayWrite(Mat A, PetscScalar **a)
2109637a0070SStefano Zampini {
2110637a0070SStefano Zampini   PetscErrorCode ierr;
2111637a0070SStefano Zampini 
2112637a0070SStefano Zampini   PetscFunctionBegin;
2113d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
2114637a0070SStefano Zampini   ierr = PetscUseMethod(A,"MatDenseCUDARestoreArrayWrite_C",(Mat,PetscScalar**),(A,a));CHKERRQ(ierr);
2115637a0070SStefano Zampini   ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr);
2116637a0070SStefano Zampini   A->offloadmask = PETSC_OFFLOAD_GPU;
2117637a0070SStefano Zampini   PetscFunctionReturn(0);
2118637a0070SStefano Zampini }
2119637a0070SStefano Zampini 
2120637a0070SStefano Zampini /*@C
2121637a0070SStefano Zampini    MatDenseCUDAGetArrayRead - Provides read-only access to the CUDA buffer inside a dense matrix. The array must be restored with MatDenseCUDARestoreArrayRead() when no longer needed.
2122637a0070SStefano Zampini 
2123637a0070SStefano Zampini    Not Collective
2124637a0070SStefano Zampini 
2125637a0070SStefano Zampini    Input Parameters:
2126637a0070SStefano Zampini .  A - the matrix
2127637a0070SStefano Zampini 
2128637a0070SStefano Zampini    Output Parameters
2129637a0070SStefano Zampini .  array - the GPU array in column major order
2130637a0070SStefano Zampini 
2131637a0070SStefano Zampini    Notes:
2132637a0070SStefano Zampini    Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite().
2133637a0070SStefano Zampini 
2134637a0070SStefano Zampini    Level: developer
2135637a0070SStefano Zampini 
2136637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead()
2137637a0070SStefano Zampini @*/
2138637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArrayRead(Mat A, const PetscScalar **a)
2139637a0070SStefano Zampini {
2140637a0070SStefano Zampini   PetscErrorCode ierr;
2141637a0070SStefano Zampini 
2142637a0070SStefano Zampini   PetscFunctionBegin;
2143d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
2144637a0070SStefano Zampini   ierr = PetscUseMethod(A,"MatDenseCUDAGetArrayRead_C",(Mat,const PetscScalar**),(A,a));CHKERRQ(ierr);
2145637a0070SStefano Zampini   PetscFunctionReturn(0);
2146637a0070SStefano Zampini }
2147637a0070SStefano Zampini 
2148637a0070SStefano Zampini /*@C
2149637a0070SStefano Zampini    MatDenseCUDARestoreArrayRead - Restore read-only access to the CUDA buffer inside a dense matrix previously obtained with a call to MatDenseCUDAGetArrayRead().
2150637a0070SStefano Zampini 
2151637a0070SStefano Zampini    Not Collective
2152637a0070SStefano Zampini 
2153637a0070SStefano Zampini    Input Parameters:
2154637a0070SStefano Zampini +  A - the matrix
2155637a0070SStefano Zampini -  array - the GPU array in column major order
2156637a0070SStefano Zampini 
2157637a0070SStefano Zampini    Notes:
2158637a0070SStefano Zampini    Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite().
2159637a0070SStefano Zampini 
2160637a0070SStefano Zampini    Level: developer
2161637a0070SStefano Zampini 
2162637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDAGetArrayRead()
2163637a0070SStefano Zampini @*/
2164637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArrayRead(Mat A, const PetscScalar **a)
2165637a0070SStefano Zampini {
2166637a0070SStefano Zampini   PetscErrorCode ierr;
2167637a0070SStefano Zampini 
2168637a0070SStefano Zampini   PetscFunctionBegin;
2169637a0070SStefano Zampini   ierr = PetscUseMethod(A,"MatDenseCUDARestoreArrayRead_C",(Mat,const PetscScalar**),(A,a));CHKERRQ(ierr);
2170637a0070SStefano Zampini   PetscFunctionReturn(0);
2171637a0070SStefano Zampini }
2172637a0070SStefano Zampini 
2173637a0070SStefano Zampini /*@C
2174637a0070SStefano Zampini    MatDenseCUDAGetArray - Provides access to the CUDA buffer inside a dense matrix. The array must be restored with MatDenseCUDARestoreArray() when no longer needed.
2175637a0070SStefano Zampini 
2176637a0070SStefano Zampini    Not Collective
2177637a0070SStefano Zampini 
2178637a0070SStefano Zampini    Input Parameters:
2179637a0070SStefano Zampini .  A - the matrix
2180637a0070SStefano Zampini 
2181637a0070SStefano Zampini    Output Parameters
2182637a0070SStefano Zampini .  array - the GPU array in column major order
2183637a0070SStefano Zampini 
2184637a0070SStefano Zampini    Notes:
2185637a0070SStefano Zampini    Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). For read-only access, use MatDenseCUDAGetArrayRead().
2186637a0070SStefano Zampini 
2187637a0070SStefano Zampini    Level: developer
2188637a0070SStefano Zampini 
2189637a0070SStefano Zampini .seealso: MatDenseCUDAGetArrayRead(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead()
2190637a0070SStefano Zampini @*/
2191637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArray(Mat A, PetscScalar **a)
2192637a0070SStefano Zampini {
2193637a0070SStefano Zampini   PetscErrorCode ierr;
2194637a0070SStefano Zampini 
2195637a0070SStefano Zampini   PetscFunctionBegin;
2196d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
2197637a0070SStefano Zampini   ierr = PetscUseMethod(A,"MatDenseCUDAGetArray_C",(Mat,PetscScalar**),(A,a));CHKERRQ(ierr);
2198637a0070SStefano Zampini   ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr);
2199637a0070SStefano Zampini   PetscFunctionReturn(0);
2200637a0070SStefano Zampini }
2201637a0070SStefano Zampini 
2202637a0070SStefano Zampini /*@C
2203637a0070SStefano Zampini    MatDenseCUDARestoreArray - Restore access to the CUDA buffer inside a dense matrix previously obtained with MatDenseCUDAGetArray().
2204637a0070SStefano Zampini 
2205637a0070SStefano Zampini    Not Collective
2206637a0070SStefano Zampini 
2207637a0070SStefano Zampini    Input Parameters:
2208637a0070SStefano Zampini +  A - the matrix
2209637a0070SStefano Zampini -  array - the GPU array in column major order
2210637a0070SStefano Zampini 
2211637a0070SStefano Zampini    Notes:
2212637a0070SStefano Zampini 
2213637a0070SStefano Zampini    Level: developer
2214637a0070SStefano Zampini 
2215637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead(), MatDenseCUDAGetArrayRead()
2216637a0070SStefano Zampini @*/
2217637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArray(Mat A, PetscScalar **a)
2218637a0070SStefano Zampini {
2219637a0070SStefano Zampini   PetscErrorCode ierr;
2220637a0070SStefano Zampini 
2221637a0070SStefano Zampini   PetscFunctionBegin;
2222d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
2223637a0070SStefano Zampini   ierr = PetscUseMethod(A,"MatDenseCUDARestoreArray_C",(Mat,PetscScalar**),(A,a));CHKERRQ(ierr);
2224637a0070SStefano Zampini   ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr);
2225637a0070SStefano Zampini   A->offloadmask = PETSC_OFFLOAD_GPU;
2226637a0070SStefano Zampini   PetscFunctionReturn(0);
2227637a0070SStefano Zampini }
2228637a0070SStefano Zampini #endif
2229637a0070SStefano Zampini 
2230637a0070SStefano Zampini /*@C
2231637a0070SStefano Zampini    MatCreateDense - Creates a matrix in dense format.
22328965ea79SLois Curfman McInnes 
2233d083f849SBarry Smith    Collective
2234db81eaa0SLois Curfman McInnes 
22358965ea79SLois Curfman McInnes    Input Parameters:
2236db81eaa0SLois Curfman McInnes +  comm - MPI communicator
22378965ea79SLois Curfman McInnes .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
2238db81eaa0SLois Curfman McInnes .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
22398965ea79SLois Curfman McInnes .  M - number of global rows (or PETSC_DECIDE to have calculated if m is given)
2240db81eaa0SLois Curfman McInnes .  N - number of global columns (or PETSC_DECIDE to have calculated if n is given)
22416cfe35ddSJose E. Roman -  data - optional location of matrix data.  Set data=NULL (PETSC_NULL_SCALAR for Fortran users) for PETSc
2242dfc5480cSLois Curfman McInnes    to control all matrix memory allocation.
22438965ea79SLois Curfman McInnes 
22448965ea79SLois Curfman McInnes    Output Parameter:
2245477f1c0bSLois Curfman McInnes .  A - the matrix
22468965ea79SLois Curfman McInnes 
2247b259b22eSLois Curfman McInnes    Notes:
224839ddd567SLois Curfman McInnes    The dense format is fully compatible with standard Fortran 77
224939ddd567SLois Curfman McInnes    storage by columns.
22508965ea79SLois Curfman McInnes 
225118f449edSLois Curfman McInnes    The data input variable is intended primarily for Fortran programmers
225218f449edSLois Curfman McInnes    who wish to allocate their own matrix memory space.  Most users should
22536cfe35ddSJose E. Roman    set data=NULL (PETSC_NULL_SCALAR for Fortran users).
225418f449edSLois Curfman McInnes 
22558965ea79SLois Curfman McInnes    The user MUST specify either the local or global matrix dimensions
22568965ea79SLois Curfman McInnes    (possibly both).
22578965ea79SLois Curfman McInnes 
2258027ccd11SLois Curfman McInnes    Level: intermediate
2259027ccd11SLois Curfman McInnes 
226039ddd567SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues()
22618965ea79SLois Curfman McInnes @*/
226269b1f4b7SBarry Smith PetscErrorCode  MatCreateDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A)
22638965ea79SLois Curfman McInnes {
22646849ba73SBarry Smith   PetscErrorCode ierr;
226513f74950SBarry Smith   PetscMPIInt    size;
22668965ea79SLois Curfman McInnes 
22673a40ed3dSBarry Smith   PetscFunctionBegin;
2268f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
22698491ab44SLisandro Dalcin   PetscValidLogicalCollectiveBool(*A,!!data,6);
2270f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2271273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2272273d9f13SBarry Smith   if (size > 1) {
2273273d9f13SBarry Smith     ierr = MatSetType(*A,MATMPIDENSE);CHKERRQ(ierr);
2274273d9f13SBarry Smith     ierr = MatMPIDenseSetPreallocation(*A,data);CHKERRQ(ierr);
22756cfe35ddSJose E. Roman     if (data) {  /* user provided data array, so no need to assemble */
22766cfe35ddSJose E. Roman       ierr = MatSetUpMultiply_MPIDense(*A);CHKERRQ(ierr);
22776cfe35ddSJose E. Roman       (*A)->assembled = PETSC_TRUE;
22786cfe35ddSJose E. Roman     }
2279273d9f13SBarry Smith   } else {
2280273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr);
2281273d9f13SBarry Smith     ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr);
22828c469469SLois Curfman McInnes   }
22833a40ed3dSBarry Smith   PetscFunctionReturn(0);
22848965ea79SLois Curfman McInnes }
22858965ea79SLois Curfman McInnes 
2286637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA)
2287637a0070SStefano Zampini /*@C
2288637a0070SStefano Zampini    MatCreateDenseCUDA - Creates a matrix in dense format using CUDA.
2289637a0070SStefano Zampini 
2290637a0070SStefano Zampini    Collective
2291637a0070SStefano Zampini 
2292637a0070SStefano Zampini    Input Parameters:
2293637a0070SStefano Zampini +  comm - MPI communicator
2294637a0070SStefano Zampini .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
2295637a0070SStefano Zampini .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
2296637a0070SStefano Zampini .  M - number of global rows (or PETSC_DECIDE to have calculated if m is given)
2297637a0070SStefano Zampini .  N - number of global columns (or PETSC_DECIDE to have calculated if n is given)
2298637a0070SStefano Zampini -  data - optional location of GPU matrix data.  Set data=NULL for PETSc
2299637a0070SStefano Zampini    to control matrix memory allocation.
2300637a0070SStefano Zampini 
2301637a0070SStefano Zampini    Output Parameter:
2302637a0070SStefano Zampini .  A - the matrix
2303637a0070SStefano Zampini 
2304637a0070SStefano Zampini    Notes:
2305637a0070SStefano Zampini 
2306637a0070SStefano Zampini    Level: intermediate
2307637a0070SStefano Zampini 
2308637a0070SStefano Zampini .seealso: MatCreate(), MatCreateDense()
2309637a0070SStefano Zampini @*/
2310637a0070SStefano Zampini PetscErrorCode  MatCreateDenseCUDA(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A)
2311637a0070SStefano Zampini {
2312637a0070SStefano Zampini   PetscErrorCode ierr;
2313637a0070SStefano Zampini   PetscMPIInt    size;
2314637a0070SStefano Zampini 
2315637a0070SStefano Zampini   PetscFunctionBegin;
2316637a0070SStefano Zampini   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2317637a0070SStefano Zampini   PetscValidLogicalCollectiveBool(*A,!!data,6);
2318637a0070SStefano Zampini   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2319637a0070SStefano Zampini   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2320637a0070SStefano Zampini   if (size > 1) {
2321637a0070SStefano Zampini     ierr = MatSetType(*A,MATMPIDENSECUDA);CHKERRQ(ierr);
2322637a0070SStefano Zampini     ierr = MatMPIDenseCUDASetPreallocation(*A,data);CHKERRQ(ierr);
2323637a0070SStefano Zampini     if (data) {  /* user provided data array, so no need to assemble */
2324637a0070SStefano Zampini       ierr = MatSetUpMultiply_MPIDense(*A);CHKERRQ(ierr);
2325637a0070SStefano Zampini       (*A)->assembled = PETSC_TRUE;
2326637a0070SStefano Zampini     }
2327637a0070SStefano Zampini   } else {
2328637a0070SStefano Zampini     ierr = MatSetType(*A,MATSEQDENSECUDA);CHKERRQ(ierr);
2329637a0070SStefano Zampini     ierr = MatSeqDenseCUDASetPreallocation(*A,data);CHKERRQ(ierr);
2330637a0070SStefano Zampini   }
2331637a0070SStefano Zampini   PetscFunctionReturn(0);
2332637a0070SStefano Zampini }
2333637a0070SStefano Zampini #endif
2334637a0070SStefano Zampini 
23356849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat)
23368965ea79SLois Curfman McInnes {
23378965ea79SLois Curfman McInnes   Mat            mat;
23383501a2bdSLois Curfman McInnes   Mat_MPIDense   *a,*oldmat = (Mat_MPIDense*)A->data;
2339dfbe8321SBarry Smith   PetscErrorCode ierr;
23408965ea79SLois Curfman McInnes 
23413a40ed3dSBarry Smith   PetscFunctionBegin;
23428965ea79SLois Curfman McInnes   *newmat = 0;
2343ce94432eSBarry Smith   ierr    = MatCreate(PetscObjectComm((PetscObject)A),&mat);CHKERRQ(ierr);
2344d0f46423SBarry Smith   ierr    = MatSetSizes(mat,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
23457adad957SLisandro Dalcin   ierr    = MatSetType(mat,((PetscObject)A)->type_name);CHKERRQ(ierr);
2346834f8fabSBarry Smith   a       = (Mat_MPIDense*)mat->data;
23475aa7edbeSHong Zhang 
2348d5f3da31SBarry Smith   mat->factortype   = A->factortype;
2349c456f294SBarry Smith   mat->assembled    = PETSC_TRUE;
2350273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
23518965ea79SLois Curfman McInnes 
23528965ea79SLois Curfman McInnes   a->size         = oldmat->size;
23538965ea79SLois Curfman McInnes   a->rank         = oldmat->rank;
2354e0fa3b82SLois Curfman McInnes   mat->insertmode = NOT_SET_VALUES;
23553782ba37SSatish Balay   a->donotstash   = oldmat->donotstash;
2356e04c1aa4SHong Zhang 
23571e1e43feSBarry Smith   ierr = PetscLayoutReference(A->rmap,&mat->rmap);CHKERRQ(ierr);
23581e1e43feSBarry Smith   ierr = PetscLayoutReference(A->cmap,&mat->cmap);CHKERRQ(ierr);
23598965ea79SLois Curfman McInnes 
23605609ef8eSBarry Smith   ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
23613bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr);
2362637a0070SStefano Zampini   ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr);
236301b82886SBarry Smith 
23648965ea79SLois Curfman McInnes   *newmat = mat;
23653a40ed3dSBarry Smith   PetscFunctionReturn(0);
23668965ea79SLois Curfman McInnes }
23678965ea79SLois Curfman McInnes 
2368eb91f321SVaclav Hapla PetscErrorCode MatLoad_MPIDense(Mat newMat, PetscViewer viewer)
2369eb91f321SVaclav Hapla {
2370eb91f321SVaclav Hapla   PetscErrorCode ierr;
237187d5ce66SSatish Balay   PetscBool      isbinary;
237287d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5)
237387d5ce66SSatish Balay   PetscBool      ishdf5;
237487d5ce66SSatish Balay #endif
2375eb91f321SVaclav Hapla 
2376eb91f321SVaclav Hapla   PetscFunctionBegin;
2377eb91f321SVaclav Hapla   PetscValidHeaderSpecific(newMat,MAT_CLASSID,1);
2378eb91f321SVaclav Hapla   PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2);
2379eb91f321SVaclav Hapla   /* force binary viewer to load .info file if it has not yet done so */
2380eb91f321SVaclav Hapla   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
2381eb91f321SVaclav Hapla   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
238287d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5)
2383eb91f321SVaclav Hapla   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERHDF5,  &ishdf5);CHKERRQ(ierr);
238487d5ce66SSatish Balay #endif
2385eb91f321SVaclav Hapla   if (isbinary) {
23868491ab44SLisandro Dalcin     ierr = MatLoad_Dense_Binary(newMat,viewer);CHKERRQ(ierr);
2387eb91f321SVaclav Hapla #if defined(PETSC_HAVE_HDF5)
238887d5ce66SSatish Balay   } else if (ishdf5) {
2389eb91f321SVaclav Hapla     ierr = MatLoad_Dense_HDF5(newMat,viewer);CHKERRQ(ierr);
2390eb91f321SVaclav Hapla #endif
239187d5ce66SSatish Balay   } else SETERRQ2(PetscObjectComm((PetscObject)newMat),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)newMat)->type_name);
2392eb91f321SVaclav Hapla   PetscFunctionReturn(0);
2393eb91f321SVaclav Hapla }
2394eb91f321SVaclav Hapla 
2395ace3abfcSBarry Smith PetscErrorCode MatEqual_MPIDense(Mat A,Mat B,PetscBool  *flag)
23966e4ee0c6SHong Zhang {
23976e4ee0c6SHong Zhang   Mat_MPIDense   *matB = (Mat_MPIDense*)B->data,*matA = (Mat_MPIDense*)A->data;
23986e4ee0c6SHong Zhang   Mat            a,b;
2399ace3abfcSBarry Smith   PetscBool      flg;
24006e4ee0c6SHong Zhang   PetscErrorCode ierr;
240190ace30eSBarry Smith 
24026e4ee0c6SHong Zhang   PetscFunctionBegin;
24036e4ee0c6SHong Zhang   a    = matA->A;
24046e4ee0c6SHong Zhang   b    = matB->A;
24056e4ee0c6SHong Zhang   ierr = MatEqual(a,b,&flg);CHKERRQ(ierr);
2406b2566f29SBarry Smith   ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
24076e4ee0c6SHong Zhang   PetscFunctionReturn(0);
24086e4ee0c6SHong Zhang }
240990ace30eSBarry Smith 
2410baa3c1c6SHong Zhang PetscErrorCode MatDestroy_MatTransMatMult_MPIDense_MPIDense(Mat A)
2411baa3c1c6SHong Zhang {
2412baa3c1c6SHong Zhang   PetscErrorCode        ierr;
2413baa3c1c6SHong Zhang   Mat_MPIDense          *a = (Mat_MPIDense*)A->data;
2414baa3c1c6SHong Zhang   Mat_TransMatMultDense *atb = a->atbdense;
2415baa3c1c6SHong Zhang 
2416baa3c1c6SHong Zhang   PetscFunctionBegin;
2417637a0070SStefano Zampini   ierr = PetscFree2(atb->sendbuf,atb->recvcounts);CHKERRQ(ierr);
2418637a0070SStefano Zampini   ierr = MatDestroy(&atb->atb);CHKERRQ(ierr);
2419637a0070SStefano Zampini   ierr = (*atb->destroy)(A);CHKERRQ(ierr);
2420baa3c1c6SHong Zhang   ierr = PetscFree(atb);CHKERRQ(ierr);
2421baa3c1c6SHong Zhang   PetscFunctionReturn(0);
2422baa3c1c6SHong Zhang }
2423baa3c1c6SHong Zhang 
2424cc48ffa7SToby Isaac PetscErrorCode MatDestroy_MatMatTransMult_MPIDense_MPIDense(Mat A)
2425cc48ffa7SToby Isaac {
2426cc48ffa7SToby Isaac   PetscErrorCode        ierr;
2427cc48ffa7SToby Isaac   Mat_MPIDense          *a = (Mat_MPIDense*)A->data;
2428cc48ffa7SToby Isaac   Mat_MatTransMultDense *abt = a->abtdense;
2429cc48ffa7SToby Isaac 
2430cc48ffa7SToby Isaac   PetscFunctionBegin;
2431cc48ffa7SToby Isaac   ierr = PetscFree2(abt->buf[0],abt->buf[1]);CHKERRQ(ierr);
2432faa55883SToby Isaac   ierr = PetscFree2(abt->recvcounts,abt->recvdispls);CHKERRQ(ierr);
2433cc48ffa7SToby Isaac   ierr = (abt->destroy)(A);CHKERRQ(ierr);
2434cc48ffa7SToby Isaac   ierr = PetscFree(abt);CHKERRQ(ierr);
2435cc48ffa7SToby Isaac   PetscFunctionReturn(0);
2436cc48ffa7SToby Isaac }
2437cc48ffa7SToby Isaac 
2438cb20be35SHong Zhang PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C)
2439cb20be35SHong Zhang {
2440baa3c1c6SHong Zhang   Mat_MPIDense          *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data;
2441baa3c1c6SHong Zhang   Mat_TransMatMultDense *atb = c->atbdense;
2442cb20be35SHong Zhang   PetscErrorCode        ierr;
2443cb20be35SHong Zhang   MPI_Comm              comm;
2444637a0070SStefano Zampini   PetscMPIInt           size,*recvcounts=atb->recvcounts;
2445637a0070SStefano Zampini   PetscScalar           *carray,*sendbuf=atb->sendbuf;
2446637a0070SStefano Zampini   const PetscScalar     *atbarray;
2447d5017740SHong Zhang   PetscInt              i,cN=C->cmap->N,cM=C->rmap->N,proc,k,j;
2448e68c0b26SHong Zhang   const PetscInt        *ranges;
2449cb20be35SHong Zhang 
2450cb20be35SHong Zhang   PetscFunctionBegin;
2451cb20be35SHong Zhang   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
2452cb20be35SHong Zhang   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2453e68c0b26SHong Zhang 
2454c5ef1628SHong Zhang   /* compute atbarray = aseq^T * bseq */
2455637a0070SStefano Zampini   ierr = MatTransposeMatMult(a->A,b->A,atb->atb ? MAT_REUSE_MATRIX : MAT_INITIAL_MATRIX,PETSC_DEFAULT,&atb->atb);CHKERRQ(ierr);
2456cb20be35SHong Zhang 
2457cb20be35SHong Zhang   ierr = MatGetOwnershipRanges(C,&ranges);CHKERRQ(ierr);
2458c5ef1628SHong Zhang   for (i=0; i<size; i++) recvcounts[i] = (ranges[i+1] - ranges[i])*cN;
2459cb20be35SHong Zhang 
2460660d5466SHong Zhang   /* arrange atbarray into sendbuf */
2461637a0070SStefano Zampini   ierr = MatDenseGetArrayRead(atb->atb,&atbarray);CHKERRQ(ierr);
2462637a0070SStefano Zampini   for (proc=0, k=0; proc<size; proc++) {
2463baa3c1c6SHong Zhang     for (j=0; j<cN; j++) {
2464c5ef1628SHong Zhang       for (i=ranges[proc]; i<ranges[proc+1]; i++) sendbuf[k++] = atbarray[i+j*cM];
2465cb20be35SHong Zhang     }
2466cb20be35SHong Zhang   }
2467637a0070SStefano Zampini   ierr = MatDenseRestoreArrayRead(atb->atb,&atbarray);CHKERRQ(ierr);
2468637a0070SStefano Zampini 
2469c5ef1628SHong Zhang   /* sum all atbarray to local values of C */
2470660d5466SHong Zhang   ierr = MatDenseGetArray(c->A,&carray);CHKERRQ(ierr);
24713462b7efSHong Zhang   ierr = MPI_Reduce_scatter(sendbuf,carray,recvcounts,MPIU_SCALAR,MPIU_SUM,comm);CHKERRQ(ierr);
2472660d5466SHong Zhang   ierr = MatDenseRestoreArray(c->A,&carray);CHKERRQ(ierr);
2473cb20be35SHong Zhang   PetscFunctionReturn(0);
2474cb20be35SHong Zhang }
2475cb20be35SHong Zhang 
24764222ddf1SHong Zhang PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat C)
2477cb20be35SHong Zhang {
2478cb20be35SHong Zhang   PetscErrorCode        ierr;
2479cb20be35SHong Zhang   MPI_Comm              comm;
2480baa3c1c6SHong Zhang   PetscMPIInt           size;
2481660d5466SHong Zhang   PetscInt              cm=A->cmap->n,cM,cN=B->cmap->N;
2482baa3c1c6SHong Zhang   Mat_MPIDense          *c;
2483baa3c1c6SHong Zhang   Mat_TransMatMultDense *atb;
2484cb20be35SHong Zhang 
2485cb20be35SHong Zhang   PetscFunctionBegin;
2486baa3c1c6SHong Zhang   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
2487cb20be35SHong Zhang   if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) {
2488cb20be35SHong Zhang     SETERRQ4(comm,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != B (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend);
2489cb20be35SHong Zhang   }
2490cb20be35SHong Zhang 
24914222ddf1SHong Zhang   /* create matrix product C */
24924222ddf1SHong Zhang   ierr = MatSetSizes(C,cm,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr);
24934222ddf1SHong Zhang   ierr = MatSetType(C,MATMPIDENSE);CHKERRQ(ierr);
249418992e5dSStefano Zampini   ierr = MatSetUp(C);CHKERRQ(ierr);
24954222ddf1SHong Zhang   ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
24964222ddf1SHong Zhang   ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2497baa3c1c6SHong Zhang 
24984222ddf1SHong Zhang   /* create data structure for reuse C */
2499baa3c1c6SHong Zhang   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2500baa3c1c6SHong Zhang   ierr = PetscNew(&atb);CHKERRQ(ierr);
25014222ddf1SHong Zhang   cM   = C->rmap->N;
2502637a0070SStefano Zampini   ierr = PetscMalloc2(cM*cN,&atb->sendbuf,size,&atb->recvcounts);CHKERRQ(ierr);
2503baa3c1c6SHong Zhang 
25044222ddf1SHong Zhang   c               = (Mat_MPIDense*)C->data;
2505baa3c1c6SHong Zhang   c->atbdense     = atb;
25064222ddf1SHong Zhang   atb->destroy    = C->ops->destroy;
25074222ddf1SHong Zhang   C->ops->destroy = MatDestroy_MatTransMatMult_MPIDense_MPIDense;
2508cb20be35SHong Zhang   PetscFunctionReturn(0);
2509cb20be35SHong Zhang }
2510cb20be35SHong Zhang 
25114222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat A, Mat B, PetscReal fill, Mat C)
2512cb20be35SHong Zhang {
2513cb20be35SHong Zhang   PetscErrorCode        ierr;
2514cc48ffa7SToby Isaac   MPI_Comm              comm;
2515cc48ffa7SToby Isaac   PetscMPIInt           i, size;
2516cc48ffa7SToby Isaac   PetscInt              maxRows, bufsiz;
2517cc48ffa7SToby Isaac   Mat_MPIDense          *c;
2518cc48ffa7SToby Isaac   PetscMPIInt           tag;
25194222ddf1SHong Zhang   PetscInt              alg;
2520cc48ffa7SToby Isaac   Mat_MatTransMultDense *abt;
25214222ddf1SHong Zhang   Mat_Product           *product = C->product;
25224222ddf1SHong Zhang   PetscBool             flg;
2523cc48ffa7SToby Isaac 
2524cc48ffa7SToby Isaac   PetscFunctionBegin;
25254222ddf1SHong Zhang   /* check local size of A and B */
2526637a0070SStefano Zampini   if (A->cmap->n != B->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local column dimensions are incompatible, A (%D) != B (%D)",A->cmap->n,B->cmap->n);
2527cc48ffa7SToby Isaac 
25284222ddf1SHong Zhang   ierr = PetscStrcmp(product->alg,"allgatherv",&flg);CHKERRQ(ierr);
2529637a0070SStefano Zampini   alg  = flg ? 0 : 1;
2530cc48ffa7SToby Isaac 
25314222ddf1SHong Zhang   /* setup matrix product C */
25324222ddf1SHong Zhang   ierr = MatSetSizes(C,A->rmap->n,B->rmap->n,A->rmap->N,B->rmap->N);CHKERRQ(ierr);
25334222ddf1SHong Zhang   ierr = MatSetType(C,MATMPIDENSE);CHKERRQ(ierr);
253418992e5dSStefano Zampini   ierr = MatSetUp(C);CHKERRQ(ierr);
25354222ddf1SHong Zhang   ierr = PetscObjectGetNewTag((PetscObject)C, &tag);CHKERRQ(ierr);
25364222ddf1SHong Zhang   ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
25374222ddf1SHong Zhang   ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
25384222ddf1SHong Zhang 
25394222ddf1SHong Zhang   /* create data structure for reuse C */
25404222ddf1SHong Zhang   ierr = PetscObjectGetComm((PetscObject)C,&comm);CHKERRQ(ierr);
2541cc48ffa7SToby Isaac   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2542cc48ffa7SToby Isaac   ierr = PetscNew(&abt);CHKERRQ(ierr);
2543cc48ffa7SToby Isaac   abt->tag = tag;
2544faa55883SToby Isaac   abt->alg = alg;
2545faa55883SToby Isaac   switch (alg) {
25464222ddf1SHong Zhang   case 1: /* alg: "cyclic" */
2547cc48ffa7SToby Isaac     for (maxRows = 0, i = 0; i < size; i++) maxRows = PetscMax(maxRows, (B->rmap->range[i + 1] - B->rmap->range[i]));
2548cc48ffa7SToby Isaac     bufsiz = A->cmap->N * maxRows;
2549cc48ffa7SToby Isaac     ierr = PetscMalloc2(bufsiz,&(abt->buf[0]),bufsiz,&(abt->buf[1]));CHKERRQ(ierr);
2550faa55883SToby Isaac     break;
25514222ddf1SHong Zhang   default: /* alg: "allgatherv" */
2552faa55883SToby Isaac     ierr = PetscMalloc2(B->rmap->n * B->cmap->N, &(abt->buf[0]), B->rmap->N * B->cmap->N, &(abt->buf[1]));CHKERRQ(ierr);
2553faa55883SToby Isaac     ierr = PetscMalloc2(size,&(abt->recvcounts),size+1,&(abt->recvdispls));CHKERRQ(ierr);
2554faa55883SToby Isaac     for (i = 0; i <= size; i++) abt->recvdispls[i] = B->rmap->range[i] * A->cmap->N;
2555faa55883SToby Isaac     for (i = 0; i < size; i++) abt->recvcounts[i] = abt->recvdispls[i + 1] - abt->recvdispls[i];
2556faa55883SToby Isaac     break;
2557faa55883SToby Isaac   }
2558cc48ffa7SToby Isaac 
25594222ddf1SHong Zhang   c                               = (Mat_MPIDense*)C->data;
2560cc48ffa7SToby Isaac   c->abtdense                     = abt;
25614222ddf1SHong Zhang   abt->destroy                    = C->ops->destroy;
25624222ddf1SHong Zhang   C->ops->destroy                 = MatDestroy_MatMatTransMult_MPIDense_MPIDense;
25634222ddf1SHong Zhang   C->ops->mattransposemultnumeric = MatMatTransposeMultNumeric_MPIDense_MPIDense;
2564cc48ffa7SToby Isaac   PetscFunctionReturn(0);
2565cc48ffa7SToby Isaac }
2566cc48ffa7SToby Isaac 
2567faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(Mat A, Mat B, Mat C)
2568cc48ffa7SToby Isaac {
2569cc48ffa7SToby Isaac   Mat_MPIDense          *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data;
2570cc48ffa7SToby Isaac   Mat_MatTransMultDense *abt = c->abtdense;
2571cc48ffa7SToby Isaac   PetscErrorCode        ierr;
2572cc48ffa7SToby Isaac   MPI_Comm              comm;
2573cc48ffa7SToby Isaac   PetscMPIInt           rank,size, sendsiz, recvsiz, sendto, recvfrom, recvisfrom;
2574637a0070SStefano Zampini   PetscScalar           *sendbuf, *recvbuf=0, *cv;
2575cc48ffa7SToby Isaac   PetscInt              i,cK=A->cmap->N,k,j,bn;
2576cc48ffa7SToby Isaac   PetscScalar           _DOne=1.0,_DZero=0.0;
2577637a0070SStefano Zampini   const PetscScalar     *av,*bv;
2578637a0070SStefano Zampini   PetscBLASInt          cm, cn, ck, alda, blda, clda;
2579cc48ffa7SToby Isaac   MPI_Request           reqs[2];
2580cc48ffa7SToby Isaac   const PetscInt        *ranges;
2581cc48ffa7SToby Isaac 
2582cc48ffa7SToby Isaac   PetscFunctionBegin;
2583cc48ffa7SToby Isaac   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
2584cc48ffa7SToby Isaac   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
2585cc48ffa7SToby Isaac   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2586637a0070SStefano Zampini   ierr = MatDenseGetArrayRead(a->A,&av);CHKERRQ(ierr);
2587637a0070SStefano Zampini   ierr = MatDenseGetArrayRead(b->A,&bv);CHKERRQ(ierr);
2588637a0070SStefano Zampini   ierr = MatDenseGetArray(c->A,&cv);CHKERRQ(ierr);
2589637a0070SStefano Zampini   ierr = MatDenseGetLDA(a->A,&i);CHKERRQ(ierr);
2590637a0070SStefano Zampini   ierr = PetscBLASIntCast(i,&alda);CHKERRQ(ierr);
2591637a0070SStefano Zampini   ierr = MatDenseGetLDA(b->A,&i);CHKERRQ(ierr);
2592637a0070SStefano Zampini   ierr = PetscBLASIntCast(i,&blda);CHKERRQ(ierr);
2593637a0070SStefano Zampini   ierr = MatDenseGetLDA(c->A,&i);CHKERRQ(ierr);
2594637a0070SStefano Zampini   ierr = PetscBLASIntCast(i,&clda);CHKERRQ(ierr);
2595cc48ffa7SToby Isaac   ierr = MatGetOwnershipRanges(B,&ranges);CHKERRQ(ierr);
2596cc48ffa7SToby Isaac   bn   = B->rmap->n;
2597637a0070SStefano Zampini   if (blda == bn) {
2598637a0070SStefano Zampini     sendbuf = (PetscScalar*)bv;
2599cc48ffa7SToby Isaac   } else {
2600cc48ffa7SToby Isaac     sendbuf = abt->buf[0];
2601cc48ffa7SToby Isaac     for (k = 0, i = 0; i < cK; i++) {
2602cc48ffa7SToby Isaac       for (j = 0; j < bn; j++, k++) {
2603637a0070SStefano Zampini         sendbuf[k] = bv[i * blda + j];
2604cc48ffa7SToby Isaac       }
2605cc48ffa7SToby Isaac     }
2606cc48ffa7SToby Isaac   }
2607cc48ffa7SToby Isaac   if (size > 1) {
2608cc48ffa7SToby Isaac     sendto = (rank + size - 1) % size;
2609cc48ffa7SToby Isaac     recvfrom = (rank + size + 1) % size;
2610cc48ffa7SToby Isaac   } else {
2611cc48ffa7SToby Isaac     sendto = recvfrom = 0;
2612cc48ffa7SToby Isaac   }
2613cc48ffa7SToby Isaac   ierr = PetscBLASIntCast(cK,&ck);CHKERRQ(ierr);
2614cc48ffa7SToby Isaac   ierr = PetscBLASIntCast(c->A->rmap->n,&cm);CHKERRQ(ierr);
2615cc48ffa7SToby Isaac   recvisfrom = rank;
2616cc48ffa7SToby Isaac   for (i = 0; i < size; i++) {
2617cc48ffa7SToby Isaac     /* we have finished receiving in sending, bufs can be read/modified */
2618cc48ffa7SToby Isaac     PetscInt nextrecvisfrom = (recvisfrom + 1) % size; /* which process the next recvbuf will originate on */
2619cc48ffa7SToby Isaac     PetscInt nextbn = ranges[nextrecvisfrom + 1] - ranges[nextrecvisfrom];
2620cc48ffa7SToby Isaac 
2621cc48ffa7SToby Isaac     if (nextrecvisfrom != rank) {
2622cc48ffa7SToby Isaac       /* start the cyclic sends from sendbuf, to recvbuf (which will switch to sendbuf) */
2623cc48ffa7SToby Isaac       sendsiz = cK * bn;
2624cc48ffa7SToby Isaac       recvsiz = cK * nextbn;
2625cc48ffa7SToby Isaac       recvbuf = (i & 1) ? abt->buf[0] : abt->buf[1];
2626cc48ffa7SToby Isaac       ierr = MPI_Isend(sendbuf, sendsiz, MPIU_SCALAR, sendto, abt->tag, comm, &reqs[0]);CHKERRQ(ierr);
2627cc48ffa7SToby Isaac       ierr = MPI_Irecv(recvbuf, recvsiz, MPIU_SCALAR, recvfrom, abt->tag, comm, &reqs[1]);CHKERRQ(ierr);
2628cc48ffa7SToby Isaac     }
2629cc48ffa7SToby Isaac 
2630cc48ffa7SToby Isaac     /* local aseq * sendbuf^T */
2631cc48ffa7SToby Isaac     ierr = PetscBLASIntCast(ranges[recvisfrom + 1] - ranges[recvisfrom], &cn);CHKERRQ(ierr);
263250ce3c9cSStefano Zampini     if (cm && cn && ck) PetscStackCallBLAS("BLASgemm",BLASgemm_("N","T",&cm,&cn,&ck,&_DOne,av,&alda,sendbuf,&cn,&_DZero,cv + clda * ranges[recvisfrom],&clda));
2633cc48ffa7SToby Isaac 
2634cc48ffa7SToby Isaac     if (nextrecvisfrom != rank) {
2635cc48ffa7SToby Isaac       /* wait for the sends and receives to complete, swap sendbuf and recvbuf */
2636cc48ffa7SToby Isaac       ierr = MPI_Waitall(2, reqs, MPI_STATUSES_IGNORE);CHKERRQ(ierr);
2637cc48ffa7SToby Isaac     }
2638cc48ffa7SToby Isaac     bn = nextbn;
2639cc48ffa7SToby Isaac     recvisfrom = nextrecvisfrom;
2640cc48ffa7SToby Isaac     sendbuf = recvbuf;
2641cc48ffa7SToby Isaac   }
2642637a0070SStefano Zampini   ierr = MatDenseRestoreArrayRead(a->A,&av);CHKERRQ(ierr);
2643637a0070SStefano Zampini   ierr = MatDenseRestoreArrayRead(b->A,&bv);CHKERRQ(ierr);
2644637a0070SStefano Zampini   ierr = MatDenseRestoreArray(c->A,&cv);CHKERRQ(ierr);
2645cc48ffa7SToby Isaac   PetscFunctionReturn(0);
2646cc48ffa7SToby Isaac }
2647cc48ffa7SToby Isaac 
2648faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(Mat A, Mat B, Mat C)
2649faa55883SToby Isaac {
2650faa55883SToby Isaac   Mat_MPIDense          *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data;
2651faa55883SToby Isaac   Mat_MatTransMultDense *abt = c->abtdense;
2652faa55883SToby Isaac   PetscErrorCode        ierr;
2653faa55883SToby Isaac   MPI_Comm              comm;
2654637a0070SStefano Zampini   PetscMPIInt           size;
2655637a0070SStefano Zampini   PetscScalar           *cv, *sendbuf, *recvbuf;
2656637a0070SStefano Zampini   const PetscScalar     *av,*bv;
2657637a0070SStefano Zampini   PetscInt              blda,i,cK=A->cmap->N,k,j,bn;
2658faa55883SToby Isaac   PetscScalar           _DOne=1.0,_DZero=0.0;
2659637a0070SStefano Zampini   PetscBLASInt          cm, cn, ck, alda, clda;
2660faa55883SToby Isaac 
2661faa55883SToby Isaac   PetscFunctionBegin;
2662faa55883SToby Isaac   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
2663faa55883SToby Isaac   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2664637a0070SStefano Zampini   ierr = MatDenseGetArrayRead(a->A,&av);CHKERRQ(ierr);
2665637a0070SStefano Zampini   ierr = MatDenseGetArrayRead(b->A,&bv);CHKERRQ(ierr);
2666637a0070SStefano Zampini   ierr = MatDenseGetArray(c->A,&cv);CHKERRQ(ierr);
2667637a0070SStefano Zampini   ierr = MatDenseGetLDA(a->A,&i);CHKERRQ(ierr);
2668637a0070SStefano Zampini   ierr = PetscBLASIntCast(i,&alda);CHKERRQ(ierr);
2669637a0070SStefano Zampini   ierr = MatDenseGetLDA(b->A,&blda);CHKERRQ(ierr);
2670637a0070SStefano Zampini   ierr = MatDenseGetLDA(c->A,&i);CHKERRQ(ierr);
2671637a0070SStefano Zampini   ierr = PetscBLASIntCast(i,&clda);CHKERRQ(ierr);
2672faa55883SToby Isaac   /* copy transpose of B into buf[0] */
2673faa55883SToby Isaac   bn      = B->rmap->n;
2674faa55883SToby Isaac   sendbuf = abt->buf[0];
2675faa55883SToby Isaac   recvbuf = abt->buf[1];
2676faa55883SToby Isaac   for (k = 0, j = 0; j < bn; j++) {
2677faa55883SToby Isaac     for (i = 0; i < cK; i++, k++) {
2678637a0070SStefano Zampini       sendbuf[k] = bv[i * blda + j];
2679faa55883SToby Isaac     }
2680faa55883SToby Isaac   }
2681637a0070SStefano Zampini   ierr = MatDenseRestoreArrayRead(b->A,&bv);CHKERRQ(ierr);
2682faa55883SToby Isaac   ierr = MPI_Allgatherv(sendbuf, bn * cK, MPIU_SCALAR, recvbuf, abt->recvcounts, abt->recvdispls, MPIU_SCALAR, comm);CHKERRQ(ierr);
2683faa55883SToby Isaac   ierr = PetscBLASIntCast(cK,&ck);CHKERRQ(ierr);
2684faa55883SToby Isaac   ierr = PetscBLASIntCast(c->A->rmap->n,&cm);CHKERRQ(ierr);
2685faa55883SToby Isaac   ierr = PetscBLASIntCast(c->A->cmap->n,&cn);CHKERRQ(ierr);
268650ce3c9cSStefano Zampini   if (cm && cn && ck) PetscStackCallBLAS("BLASgemm",BLASgemm_("N","N",&cm,&cn,&ck,&_DOne,av,&alda,recvbuf,&ck,&_DZero,cv,&clda));
2687637a0070SStefano Zampini   ierr = MatDenseRestoreArrayRead(a->A,&av);CHKERRQ(ierr);
2688637a0070SStefano Zampini   ierr = MatDenseRestoreArrayRead(b->A,&bv);CHKERRQ(ierr);
2689637a0070SStefano Zampini   ierr = MatDenseRestoreArray(c->A,&cv);CHKERRQ(ierr);
2690faa55883SToby Isaac   PetscFunctionReturn(0);
2691faa55883SToby Isaac }
2692faa55883SToby Isaac 
2693faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat A, Mat B, Mat C)
2694faa55883SToby Isaac {
2695faa55883SToby Isaac   Mat_MPIDense          *c=(Mat_MPIDense*)C->data;
2696faa55883SToby Isaac   Mat_MatTransMultDense *abt = c->abtdense;
2697faa55883SToby Isaac   PetscErrorCode        ierr;
2698faa55883SToby Isaac 
2699faa55883SToby Isaac   PetscFunctionBegin;
2700faa55883SToby Isaac   switch (abt->alg) {
2701faa55883SToby Isaac   case 1:
2702faa55883SToby Isaac     ierr = MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(A, B, C);CHKERRQ(ierr);
2703faa55883SToby Isaac     break;
2704faa55883SToby Isaac   default:
2705faa55883SToby Isaac     ierr = MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(A, B, C);CHKERRQ(ierr);
2706faa55883SToby Isaac     break;
2707faa55883SToby Isaac   }
2708faa55883SToby Isaac   PetscFunctionReturn(0);
2709faa55883SToby Isaac }
2710faa55883SToby Isaac 
2711320f2790SHong Zhang PetscErrorCode MatDestroy_MatMatMult_MPIDense_MPIDense(Mat A)
2712320f2790SHong Zhang {
2713320f2790SHong Zhang   PetscErrorCode   ierr;
2714320f2790SHong Zhang   Mat_MPIDense     *a = (Mat_MPIDense*)A->data;
2715320f2790SHong Zhang   Mat_MatMultDense *ab = a->abdense;
2716320f2790SHong Zhang 
2717320f2790SHong Zhang   PetscFunctionBegin;
2718320f2790SHong Zhang   ierr = MatDestroy(&ab->Ce);CHKERRQ(ierr);
2719320f2790SHong Zhang   ierr = MatDestroy(&ab->Ae);CHKERRQ(ierr);
2720320f2790SHong Zhang   ierr = MatDestroy(&ab->Be);CHKERRQ(ierr);
2721320f2790SHong Zhang 
2722320f2790SHong Zhang   ierr = (ab->destroy)(A);CHKERRQ(ierr);
2723320f2790SHong Zhang   ierr = PetscFree(ab);CHKERRQ(ierr);
2724320f2790SHong Zhang   PetscFunctionReturn(0);
2725320f2790SHong Zhang }
2726320f2790SHong Zhang 
27275242a7b1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
2728320f2790SHong Zhang PetscErrorCode MatMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C)
2729320f2790SHong Zhang {
2730320f2790SHong Zhang   PetscErrorCode   ierr;
2731320f2790SHong Zhang   Mat_MPIDense     *c=(Mat_MPIDense*)C->data;
2732320f2790SHong Zhang   Mat_MatMultDense *ab=c->abdense;
2733320f2790SHong Zhang 
2734320f2790SHong Zhang   PetscFunctionBegin;
2735de0a22f0SHong Zhang   ierr = MatConvert_MPIDense_Elemental(A,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Ae);CHKERRQ(ierr);
2736de0a22f0SHong Zhang   ierr = MatConvert_MPIDense_Elemental(B,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Be);CHKERRQ(ierr);
27374222ddf1SHong Zhang   ierr = MatMatMultNumeric_Elemental(ab->Ae,ab->Be,ab->Ce);CHKERRQ(ierr);
2738de0a22f0SHong Zhang   ierr = MatConvert(ab->Ce,MATMPIDENSE,MAT_REUSE_MATRIX,&C);CHKERRQ(ierr);
2739320f2790SHong Zhang   PetscFunctionReturn(0);
2740320f2790SHong Zhang }
2741320f2790SHong Zhang 
27424222ddf1SHong Zhang PetscErrorCode MatMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat C)
2743320f2790SHong Zhang {
2744320f2790SHong Zhang   PetscErrorCode   ierr;
2745320f2790SHong Zhang   Mat              Ae,Be,Ce;
2746320f2790SHong Zhang   Mat_MPIDense     *c;
2747320f2790SHong Zhang   Mat_MatMultDense *ab;
2748320f2790SHong Zhang 
2749320f2790SHong Zhang   PetscFunctionBegin;
27504222ddf1SHong Zhang   /* check local size of A and B */
2751320f2790SHong Zhang   if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend) {
2752378336b6SHong Zhang     SETERRQ4(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != B (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend);
2753320f2790SHong Zhang   }
2754320f2790SHong Zhang 
27554222ddf1SHong Zhang   /* create elemental matrices Ae and Be */
27564222ddf1SHong Zhang   ierr = MatCreate(PetscObjectComm((PetscObject)A), &Ae);CHKERRQ(ierr);
27574222ddf1SHong Zhang   ierr = MatSetSizes(Ae,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
27584222ddf1SHong Zhang   ierr = MatSetType(Ae,MATELEMENTAL);CHKERRQ(ierr);
27594222ddf1SHong Zhang   ierr = MatSetUp(Ae);CHKERRQ(ierr);
27604222ddf1SHong Zhang   ierr = MatSetOption(Ae,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr);
2761320f2790SHong Zhang 
27624222ddf1SHong Zhang   ierr = MatCreate(PetscObjectComm((PetscObject)B), &Be);CHKERRQ(ierr);
27634222ddf1SHong Zhang   ierr = MatSetSizes(Be,PETSC_DECIDE,PETSC_DECIDE,B->rmap->N,B->cmap->N);CHKERRQ(ierr);
27644222ddf1SHong Zhang   ierr = MatSetType(Be,MATELEMENTAL);CHKERRQ(ierr);
27654222ddf1SHong Zhang   ierr = MatSetUp(Be);CHKERRQ(ierr);
27664222ddf1SHong Zhang   ierr = MatSetOption(Be,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr);
2767320f2790SHong Zhang 
27684222ddf1SHong Zhang   /* compute symbolic Ce = Ae*Be */
27694222ddf1SHong Zhang   ierr = MatCreate(PetscObjectComm((PetscObject)C),&Ce);CHKERRQ(ierr);
27704222ddf1SHong Zhang   ierr = MatMatMultSymbolic_Elemental(Ae,Be,fill,Ce);CHKERRQ(ierr);
27714222ddf1SHong Zhang 
27724222ddf1SHong Zhang   /* setup C */
27734222ddf1SHong Zhang   ierr = MatSetSizes(C,A->rmap->n,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr);
27744222ddf1SHong Zhang   ierr = MatSetType(C,MATDENSE);CHKERRQ(ierr);
27754222ddf1SHong Zhang   ierr = MatSetUp(C);CHKERRQ(ierr);
2776320f2790SHong Zhang 
2777320f2790SHong Zhang   /* create data structure for reuse Cdense */
2778320f2790SHong Zhang   ierr = PetscNew(&ab);CHKERRQ(ierr);
27794222ddf1SHong Zhang   c                  = (Mat_MPIDense*)C->data;
2780320f2790SHong Zhang   c->abdense         = ab;
2781320f2790SHong Zhang 
2782320f2790SHong Zhang   ab->Ae             = Ae;
2783320f2790SHong Zhang   ab->Be             = Be;
2784320f2790SHong Zhang   ab->Ce             = Ce;
27854222ddf1SHong Zhang   ab->destroy        = C->ops->destroy;
27864222ddf1SHong Zhang   C->ops->destroy        = MatDestroy_MatMatMult_MPIDense_MPIDense;
27874222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIDense;
27884222ddf1SHong Zhang   C->ops->productnumeric = MatProductNumeric_AB;
2789320f2790SHong Zhang   PetscFunctionReturn(0);
2790320f2790SHong Zhang }
27914222ddf1SHong Zhang #endif
27924222ddf1SHong Zhang /* ----------------------------------------------- */
27934222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
27944222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_AB(Mat C)
2795320f2790SHong Zhang {
2796320f2790SHong Zhang   PetscFunctionBegin;
27974222ddf1SHong Zhang   C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIDense;
27984222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AB;
27994222ddf1SHong Zhang   C->ops->productnumeric  = MatProductNumeric_AB;
2800320f2790SHong Zhang   PetscFunctionReturn(0);
2801320f2790SHong Zhang }
28025242a7b1SHong Zhang #endif
280386aefd0dSHong Zhang 
28044222ddf1SHong Zhang static PetscErrorCode MatProductSymbolic_AtB_MPIDense(Mat C)
28054222ddf1SHong Zhang {
28064222ddf1SHong Zhang   PetscErrorCode ierr;
28074222ddf1SHong Zhang   Mat_Product    *product = C->product;
28084222ddf1SHong Zhang 
28094222ddf1SHong Zhang   PetscFunctionBegin;
28104222ddf1SHong Zhang   ierr = MatTransposeMatMultSymbolic_MPIDense_MPIDense(product->A,product->B,product->fill,C);CHKERRQ(ierr);
28114222ddf1SHong Zhang   C->ops->productnumeric          = MatProductNumeric_AtB;
28124222ddf1SHong Zhang   C->ops->transposematmultnumeric = MatTransposeMatMultNumeric_MPIDense_MPIDense;
28134222ddf1SHong Zhang   PetscFunctionReturn(0);
28144222ddf1SHong Zhang }
28154222ddf1SHong Zhang 
28164222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_AtB(Mat C)
28174222ddf1SHong Zhang {
28184222ddf1SHong Zhang   Mat_Product *product = C->product;
28194222ddf1SHong Zhang   Mat         A = product->A,B=product->B;
28204222ddf1SHong Zhang 
28214222ddf1SHong Zhang   PetscFunctionBegin;
28224222ddf1SHong Zhang   if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend)
28234222ddf1SHong Zhang     SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, (%D, %D) != (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend);
28244222ddf1SHong Zhang 
28254222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AtB_MPIDense;
28264222ddf1SHong Zhang   PetscFunctionReturn(0);
28274222ddf1SHong Zhang }
28284222ddf1SHong Zhang 
28294222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_ABt(Mat C)
28304222ddf1SHong Zhang {
28314222ddf1SHong Zhang   PetscErrorCode ierr;
28324222ddf1SHong Zhang   Mat_Product    *product = C->product;
28334222ddf1SHong Zhang   const char     *algTypes[2] = {"allgatherv","cyclic"};
28344222ddf1SHong Zhang   PetscInt       alg,nalg = 2;
28354222ddf1SHong Zhang   PetscBool      flg = PETSC_FALSE;
28364222ddf1SHong Zhang 
28374222ddf1SHong Zhang   PetscFunctionBegin;
28384222ddf1SHong Zhang   /* Set default algorithm */
28394222ddf1SHong Zhang   alg = 0; /* default is allgatherv */
28404222ddf1SHong Zhang   ierr = PetscStrcmp(product->alg,"default",&flg);CHKERRQ(ierr);
28414222ddf1SHong Zhang   if (flg) {
28424222ddf1SHong Zhang     ierr = MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]);CHKERRQ(ierr);
28434222ddf1SHong Zhang   }
28444222ddf1SHong Zhang 
28454222ddf1SHong Zhang   /* Get runtime option */
28464222ddf1SHong Zhang   if (product->api_user) {
28474222ddf1SHong Zhang     ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatMatTransposeMult","Mat");CHKERRQ(ierr);
28484222ddf1SHong Zhang     ierr = PetscOptionsEList("-matmattransmult_mpidense_mpidense_via","Algorithmic approach","MatMatTransposeMult",algTypes,nalg,algTypes[alg],&alg,&flg);CHKERRQ(ierr);
28494222ddf1SHong Zhang     ierr = PetscOptionsEnd();CHKERRQ(ierr);
28504222ddf1SHong Zhang   } else {
28514222ddf1SHong Zhang     ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatProduct_ABt","Mat");CHKERRQ(ierr);
28524222ddf1SHong Zhang     ierr = PetscOptionsEList("-matproduct_abt_mpidense_mpidense_via","Algorithmic approach","MatProduct_ABt",algTypes,nalg,algTypes[alg],&alg,&flg);CHKERRQ(ierr);
28534222ddf1SHong Zhang     ierr = PetscOptionsEnd();CHKERRQ(ierr);
28544222ddf1SHong Zhang   }
28554222ddf1SHong Zhang   if (flg) {
28564222ddf1SHong Zhang     ierr = MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]);CHKERRQ(ierr);
28574222ddf1SHong Zhang   }
28584222ddf1SHong Zhang 
28594222ddf1SHong Zhang   C->ops->mattransposemultsymbolic = MatMatTransposeMultSymbolic_MPIDense_MPIDense;
28604222ddf1SHong Zhang   C->ops->productsymbolic          = MatProductSymbolic_ABt;
28614222ddf1SHong Zhang   C->ops->productnumeric           = MatProductNumeric_ABt;
28624222ddf1SHong Zhang   PetscFunctionReturn(0);
28634222ddf1SHong Zhang }
28644222ddf1SHong Zhang 
28654222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense(Mat C)
28664222ddf1SHong Zhang {
28674222ddf1SHong Zhang   PetscErrorCode ierr;
28684222ddf1SHong Zhang   Mat_Product    *product = C->product;
28694222ddf1SHong Zhang 
28704222ddf1SHong Zhang   PetscFunctionBegin;
28714222ddf1SHong Zhang   switch (product->type) {
28724222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
28734222ddf1SHong Zhang   case MATPRODUCT_AB:
28744222ddf1SHong Zhang     ierr = MatProductSetFromOptions_MPIDense_AB(C);CHKERRQ(ierr);
28754222ddf1SHong Zhang     break;
28764222ddf1SHong Zhang #endif
28774222ddf1SHong Zhang   case MATPRODUCT_AtB:
28784222ddf1SHong Zhang     ierr = MatProductSetFromOptions_MPIDense_AtB(C);CHKERRQ(ierr);
28794222ddf1SHong Zhang     break;
28804222ddf1SHong Zhang   case MATPRODUCT_ABt:
28814222ddf1SHong Zhang     ierr = MatProductSetFromOptions_MPIDense_ABt(C);CHKERRQ(ierr);
28824222ddf1SHong Zhang     break;
2883544a5e07SHong Zhang   default: SETERRQ1(PetscObjectComm((PetscObject)C),PETSC_ERR_SUP,"MatProduct type %s is not supported for MPIDense and MPIDense matrices",MatProductTypes[product->type]);
28844222ddf1SHong Zhang   }
28854222ddf1SHong Zhang   PetscFunctionReturn(0);
28864222ddf1SHong Zhang }
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