18965ea79SLois Curfman McInnes #ifndef lint 2*4e220ebcSLois Curfman McInnes static char vcid[] = "$Id: mpidense.c,v 1.47 1996/08/15 16:05:25 bsmith Exp curfman $"; 38965ea79SLois Curfman McInnes #endif 48965ea79SLois Curfman McInnes 5ed3cc1f0SBarry Smith /* 6ed3cc1f0SBarry Smith Basic functions for basic parallel dense matrices. 7ed3cc1f0SBarry Smith */ 8ed3cc1f0SBarry Smith 970f55243SBarry Smith #include "src/mat/impls/dense/mpi/mpidense.h" 10f5eb4b81SSatish Balay #include "src/vec/vecimpl.h" 118965ea79SLois Curfman McInnes 127056b6fcSBarry Smith static int MatSetValues_MPIDense(Mat mat,int m,int *idxm,int n,int *idxn,Scalar *v,InsertMode addv) 138965ea79SLois Curfman McInnes { 1439b7565bSBarry Smith Mat_MPIDense *A = (Mat_MPIDense *) mat->data; 1539b7565bSBarry Smith int ierr, i, j, rstart = A->rstart, rend = A->rend, row; 1639b7565bSBarry Smith int roworiented = A->roworiented; 178965ea79SLois Curfman McInnes 1839b7565bSBarry Smith if (A->insertmode != NOT_SET_VALUES && A->insertmode != addv) { 1939ddd567SLois Curfman McInnes SETERRQ(1,"MatSetValues_MPIDense:Cannot mix inserts and adds"); 208965ea79SLois Curfman McInnes } 2139b7565bSBarry Smith A->insertmode = addv; 228965ea79SLois Curfman McInnes for ( i=0; i<m; i++ ) { 2339ddd567SLois Curfman McInnes if (idxm[i] < 0) SETERRQ(1,"MatSetValues_MPIDense:Negative row"); 2439b7565bSBarry Smith if (idxm[i] >= A->M) SETERRQ(1,"MatSetValues_MPIDense:Row too large"); 258965ea79SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 268965ea79SLois Curfman McInnes row = idxm[i] - rstart; 2739b7565bSBarry Smith if (roworiented) { 2839b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv); CHKERRQ(ierr); 2939b7565bSBarry Smith } 3039b7565bSBarry Smith else { 318965ea79SLois Curfman McInnes for ( j=0; j<n; j++ ) { 3239ddd567SLois Curfman McInnes if (idxn[j] < 0) SETERRQ(1,"MatSetValues_MPIDense:Negative column"); 3339b7565bSBarry Smith if (idxn[j] >= A->N) SETERRQ(1,"MatSetValues_MPIDense:Column too large"); 3439b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv); CHKERRQ(ierr); 3539b7565bSBarry Smith } 368965ea79SLois Curfman McInnes } 378965ea79SLois Curfman McInnes } 388965ea79SLois Curfman McInnes else { 3939b7565bSBarry Smith if (roworiented) { 4039b7565bSBarry Smith ierr = StashValues_Private(&A->stash,idxm[i],n,idxn,v+i*n,addv); CHKERRQ(ierr); 4139b7565bSBarry Smith } 4239b7565bSBarry Smith else { /* must stash each seperately */ 4339b7565bSBarry Smith row = idxm[i]; 4439b7565bSBarry Smith for ( j=0; j<n; j++ ) { 457056b6fcSBarry Smith ierr = StashValues_Private(&A->stash,row,1,&idxn[j],v+i+j*m,addv);CHKERRQ(ierr); 4639b7565bSBarry Smith } 4739b7565bSBarry Smith } 48b49de8d1SLois Curfman McInnes } 49b49de8d1SLois Curfman McInnes } 50b49de8d1SLois Curfman McInnes return 0; 51b49de8d1SLois Curfman McInnes } 52b49de8d1SLois Curfman McInnes 53b49de8d1SLois Curfman McInnes static int MatGetValues_MPIDense(Mat mat,int m,int *idxm,int n,int *idxn,Scalar *v) 54b49de8d1SLois Curfman McInnes { 55b49de8d1SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data; 56b49de8d1SLois Curfman McInnes int ierr, i, j, rstart = mdn->rstart, rend = mdn->rend, row; 57b49de8d1SLois Curfman McInnes 58b49de8d1SLois Curfman McInnes for ( i=0; i<m; i++ ) { 59b49de8d1SLois Curfman McInnes if (idxm[i] < 0) SETERRQ(1,"MatGetValues_MPIDense:Negative row"); 60b49de8d1SLois Curfman McInnes if (idxm[i] >= mdn->M) SETERRQ(1,"MatGetValues_MPIDense:Row too large"); 61b49de8d1SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 62b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 63b49de8d1SLois Curfman McInnes for ( j=0; j<n; j++ ) { 64b49de8d1SLois Curfman McInnes if (idxn[j] < 0) SETERRQ(1,"MatGetValues_MPIDense:Negative column"); 65b49de8d1SLois Curfman McInnes if (idxn[j] >= mdn->N) 66b49de8d1SLois Curfman McInnes SETERRQ(1,"MatGetValues_MPIDense:Column too large"); 67b49de8d1SLois Curfman McInnes ierr = MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j); CHKERRQ(ierr); 68b49de8d1SLois Curfman McInnes } 69b49de8d1SLois Curfman McInnes } 70b49de8d1SLois Curfman McInnes else { 71b49de8d1SLois Curfman McInnes SETERRQ(1,"MatGetValues_MPIDense:Only local values currently supported"); 728965ea79SLois Curfman McInnes } 738965ea79SLois Curfman McInnes } 748965ea79SLois Curfman McInnes return 0; 758965ea79SLois Curfman McInnes } 768965ea79SLois Curfman McInnes 77ff14e315SSatish Balay static int MatGetArray_MPIDense(Mat A,Scalar **array) 78ff14e315SSatish Balay { 79ff14e315SSatish Balay Mat_MPIDense *a = (Mat_MPIDense *) A->data; 80ff14e315SSatish Balay int ierr; 81ff14e315SSatish Balay 82ff14e315SSatish Balay ierr = MatGetArray(a->A,array); CHKERRQ(ierr); 83ff14e315SSatish Balay return 0; 84ff14e315SSatish Balay } 85ff14e315SSatish Balay 86ff14e315SSatish Balay static int MatRestoreArray_MPIDense(Mat A,Scalar **array) 87ff14e315SSatish Balay { 88ff14e315SSatish Balay return 0; 89ff14e315SSatish Balay } 90ff14e315SSatish Balay 9139ddd567SLois Curfman McInnes static int MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode) 928965ea79SLois Curfman McInnes { 9339ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data; 948965ea79SLois Curfman McInnes MPI_Comm comm = mat->comm; 9539ddd567SLois Curfman McInnes int size = mdn->size, *owners = mdn->rowners, rank = mdn->rank; 968965ea79SLois Curfman McInnes int *nprocs,i,j,idx,*procs,nsends,nreceives,nmax,*work; 9739ddd567SLois Curfman McInnes int tag = mat->tag, *owner,*starts,count,ierr; 988965ea79SLois Curfman McInnes InsertMode addv; 9939ddd567SLois Curfman McInnes MPI_Request *send_waits,*recv_waits; 1008965ea79SLois Curfman McInnes Scalar *rvalues,*svalues; 1018965ea79SLois Curfman McInnes 1028965ea79SLois Curfman McInnes /* make sure all processors are either in INSERTMODE or ADDMODE */ 1036d84be18SBarry Smith MPI_Allreduce(&mdn->insertmode,&addv,1,MPI_INT,MPI_BOR,comm); 1047056b6fcSBarry Smith if (addv == (ADD_VALUES|INSERT_VALUES)) { 1057056b6fcSBarry Smith SETERRQ(1,"MatAssemblyBegin_MPIDense:Cannot mix adds/inserts on different procs"); 1068965ea79SLois Curfman McInnes } 10739ddd567SLois Curfman McInnes mdn->insertmode = addv; /* in case this processor had no cache */ 1088965ea79SLois Curfman McInnes 1098965ea79SLois Curfman McInnes /* first count number of contributors to each processor */ 1100452661fSBarry Smith nprocs = (int *) PetscMalloc( 2*size*sizeof(int) ); CHKPTRQ(nprocs); 111cddf8d76SBarry Smith PetscMemzero(nprocs,2*size*sizeof(int)); procs = nprocs + size; 1120452661fSBarry Smith owner = (int *) PetscMalloc( (mdn->stash.n+1)*sizeof(int) ); CHKPTRQ(owner); 11339ddd567SLois Curfman McInnes for ( i=0; i<mdn->stash.n; i++ ) { 11439ddd567SLois Curfman McInnes idx = mdn->stash.idx[i]; 1158965ea79SLois Curfman McInnes for ( j=0; j<size; j++ ) { 1168965ea79SLois Curfman McInnes if (idx >= owners[j] && idx < owners[j+1]) { 1178965ea79SLois Curfman McInnes nprocs[j]++; procs[j] = 1; owner[i] = j; break; 1188965ea79SLois Curfman McInnes } 1198965ea79SLois Curfman McInnes } 1208965ea79SLois Curfman McInnes } 1218965ea79SLois Curfman McInnes nsends = 0; for ( i=0; i<size; i++ ) { nsends += procs[i];} 1228965ea79SLois Curfman McInnes 1238965ea79SLois Curfman McInnes /* inform other processors of number of messages and max length*/ 1240452661fSBarry Smith work = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(work); 1256d84be18SBarry Smith MPI_Allreduce(procs,work,size,MPI_INT,MPI_SUM,comm); 1268965ea79SLois Curfman McInnes nreceives = work[rank]; 1276d84be18SBarry Smith MPI_Allreduce(nprocs,work,size,MPI_INT,MPI_MAX,comm); 1288965ea79SLois Curfman McInnes nmax = work[rank]; 1290452661fSBarry Smith PetscFree(work); 1308965ea79SLois Curfman McInnes 1318965ea79SLois Curfman McInnes /* post receives: 1328965ea79SLois Curfman McInnes 1) each message will consist of ordered pairs 1338965ea79SLois Curfman McInnes (global index,value) we store the global index as a double 1348965ea79SLois Curfman McInnes to simplify the message passing. 1358965ea79SLois Curfman McInnes 2) since we don't know how long each individual message is we 1368965ea79SLois Curfman McInnes allocate the largest needed buffer for each receive. Potentially 1378965ea79SLois Curfman McInnes this is a lot of wasted space. 1388965ea79SLois Curfman McInnes 1398965ea79SLois Curfman McInnes This could be done better. 1408965ea79SLois Curfman McInnes */ 1410452661fSBarry Smith rvalues = (Scalar *) PetscMalloc(3*(nreceives+1)*(nmax+1)*sizeof(Scalar)); 1428965ea79SLois Curfman McInnes CHKPTRQ(rvalues); 1430452661fSBarry Smith recv_waits = (MPI_Request *) PetscMalloc((nreceives+1)*sizeof(MPI_Request)); 1448965ea79SLois Curfman McInnes CHKPTRQ(recv_waits); 1458965ea79SLois Curfman McInnes for ( i=0; i<nreceives; i++ ) { 1467056b6fcSBarry Smith MPI_Irecv(rvalues+3*nmax*i,3*nmax,MPIU_SCALAR,MPI_ANY_SOURCE,tag,comm,recv_waits+i); 1478965ea79SLois Curfman McInnes } 1488965ea79SLois Curfman McInnes 1498965ea79SLois Curfman McInnes /* do sends: 1508965ea79SLois Curfman McInnes 1) starts[i] gives the starting index in svalues for stuff going to 1518965ea79SLois Curfman McInnes the ith processor 1528965ea79SLois Curfman McInnes */ 1530452661fSBarry Smith svalues = (Scalar *) PetscMalloc( 3*(mdn->stash.n+1)*sizeof(Scalar) ); 15439ddd567SLois Curfman McInnes CHKPTRQ(svalues); 1550452661fSBarry Smith send_waits = (MPI_Request *) PetscMalloc( (nsends+1)*sizeof(MPI_Request)); 1568965ea79SLois Curfman McInnes CHKPTRQ(send_waits); 1570452661fSBarry Smith starts = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(starts); 1588965ea79SLois Curfman McInnes starts[0] = 0; 1598965ea79SLois Curfman McInnes for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 16039ddd567SLois Curfman McInnes for ( i=0; i<mdn->stash.n; i++ ) { 16139ddd567SLois Curfman McInnes svalues[3*starts[owner[i]]] = (Scalar) mdn->stash.idx[i]; 16239ddd567SLois Curfman McInnes svalues[3*starts[owner[i]]+1] = (Scalar) mdn->stash.idy[i]; 16339ddd567SLois Curfman McInnes svalues[3*(starts[owner[i]]++)+2] = mdn->stash.array[i]; 1648965ea79SLois Curfman McInnes } 1650452661fSBarry Smith PetscFree(owner); 1668965ea79SLois Curfman McInnes starts[0] = 0; 1678965ea79SLois Curfman McInnes for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 1688965ea79SLois Curfman McInnes count = 0; 1698965ea79SLois Curfman McInnes for ( i=0; i<size; i++ ) { 1708965ea79SLois Curfman McInnes if (procs[i]) { 1717056b6fcSBarry Smith MPI_Isend(svalues+3*starts[i],3*nprocs[i],MPIU_SCALAR,i,tag,comm,send_waits+count++); 1728965ea79SLois Curfman McInnes } 1738965ea79SLois Curfman McInnes } 1740452661fSBarry Smith PetscFree(starts); PetscFree(nprocs); 1758965ea79SLois Curfman McInnes 1768965ea79SLois Curfman McInnes /* Free cache space */ 17739ddd567SLois Curfman McInnes ierr = StashDestroy_Private(&mdn->stash); CHKERRQ(ierr); 1788965ea79SLois Curfman McInnes 17939ddd567SLois Curfman McInnes mdn->svalues = svalues; mdn->rvalues = rvalues; 18039ddd567SLois Curfman McInnes mdn->nsends = nsends; mdn->nrecvs = nreceives; 18139ddd567SLois Curfman McInnes mdn->send_waits = send_waits; mdn->recv_waits = recv_waits; 18239ddd567SLois Curfman McInnes mdn->rmax = nmax; 1838965ea79SLois Curfman McInnes 1848965ea79SLois Curfman McInnes return 0; 1858965ea79SLois Curfman McInnes } 18639ddd567SLois Curfman McInnes extern int MatSetUpMultiply_MPIDense(Mat); 1878965ea79SLois Curfman McInnes 18839ddd567SLois Curfman McInnes static int MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode) 1898965ea79SLois Curfman McInnes { 19039ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data; 1918965ea79SLois Curfman McInnes MPI_Status *send_status,recv_status; 19239ddd567SLois Curfman McInnes int imdex, nrecvs=mdn->nrecvs, count=nrecvs, i, n, ierr, row, col; 1938965ea79SLois Curfman McInnes Scalar *values,val; 19439ddd567SLois Curfman McInnes InsertMode addv = mdn->insertmode; 1958965ea79SLois Curfman McInnes 1968965ea79SLois Curfman McInnes /* wait on receives */ 1978965ea79SLois Curfman McInnes while (count) { 19839ddd567SLois Curfman McInnes MPI_Waitany(nrecvs,mdn->recv_waits,&imdex,&recv_status); 1998965ea79SLois Curfman McInnes /* unpack receives into our local space */ 20039ddd567SLois Curfman McInnes values = mdn->rvalues + 3*imdex*mdn->rmax; 2018965ea79SLois Curfman McInnes MPI_Get_count(&recv_status,MPIU_SCALAR,&n); 2028965ea79SLois Curfman McInnes n = n/3; 2038965ea79SLois Curfman McInnes for ( i=0; i<n; i++ ) { 204227d817aSBarry Smith row = (int) PetscReal(values[3*i]) - mdn->rstart; 205227d817aSBarry Smith col = (int) PetscReal(values[3*i+1]); 2068965ea79SLois Curfman McInnes val = values[3*i+2]; 20739ddd567SLois Curfman McInnes if (col >= 0 && col < mdn->N) { 20839ddd567SLois Curfman McInnes MatSetValues(mdn->A,1,&row,1,&col,&val,addv); 2098965ea79SLois Curfman McInnes } 21039ddd567SLois Curfman McInnes else {SETERRQ(1,"MatAssemblyEnd_MPIDense:Invalid column");} 2118965ea79SLois Curfman McInnes } 2128965ea79SLois Curfman McInnes count--; 2138965ea79SLois Curfman McInnes } 2140452661fSBarry Smith PetscFree(mdn->recv_waits); PetscFree(mdn->rvalues); 2158965ea79SLois Curfman McInnes 2168965ea79SLois Curfman McInnes /* wait on sends */ 21739ddd567SLois Curfman McInnes if (mdn->nsends) { 2187056b6fcSBarry Smith send_status = (MPI_Status *) PetscMalloc(mdn->nsends*sizeof(MPI_Status));CHKPTRQ(send_status); 21939ddd567SLois Curfman McInnes MPI_Waitall(mdn->nsends,mdn->send_waits,send_status); 2200452661fSBarry Smith PetscFree(send_status); 2218965ea79SLois Curfman McInnes } 2220452661fSBarry Smith PetscFree(mdn->send_waits); PetscFree(mdn->svalues); 2238965ea79SLois Curfman McInnes 22439ddd567SLois Curfman McInnes mdn->insertmode = NOT_SET_VALUES; 22539ddd567SLois Curfman McInnes ierr = MatAssemblyBegin(mdn->A,mode); CHKERRQ(ierr); 22639ddd567SLois Curfman McInnes ierr = MatAssemblyEnd(mdn->A,mode); CHKERRQ(ierr); 2278965ea79SLois Curfman McInnes 2286d4a8577SBarry Smith if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 22939ddd567SLois Curfman McInnes ierr = MatSetUpMultiply_MPIDense(mat); CHKERRQ(ierr); 2308965ea79SLois Curfman McInnes } 2318965ea79SLois Curfman McInnes return 0; 2328965ea79SLois Curfman McInnes } 2338965ea79SLois Curfman McInnes 23439ddd567SLois Curfman McInnes static int MatZeroEntries_MPIDense(Mat A) 2358965ea79SLois Curfman McInnes { 23639ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense *) A->data; 23739ddd567SLois Curfman McInnes return MatZeroEntries(l->A); 2388965ea79SLois Curfman McInnes } 2398965ea79SLois Curfman McInnes 240*4e220ebcSLois Curfman McInnes static int MatGetBlockSize_MPIDense(Mat A,int *bs) 241*4e220ebcSLois Curfman McInnes { 242*4e220ebcSLois Curfman McInnes *bs = 1; 243*4e220ebcSLois Curfman McInnes return 0; 244*4e220ebcSLois Curfman McInnes } 245*4e220ebcSLois Curfman McInnes 2468965ea79SLois Curfman McInnes /* the code does not do the diagonal entries correctly unless the 2478965ea79SLois Curfman McInnes matrix is square and the column and row owerships are identical. 2488965ea79SLois Curfman McInnes This is a BUG. The only way to fix it seems to be to access 2493501a2bdSLois Curfman McInnes mdn->A and mdn->B directly and not through the MatZeroRows() 2508965ea79SLois Curfman McInnes routine. 2518965ea79SLois Curfman McInnes */ 25239ddd567SLois Curfman McInnes static int MatZeroRows_MPIDense(Mat A,IS is,Scalar *diag) 2538965ea79SLois Curfman McInnes { 25439ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense *) A->data; 2558965ea79SLois Curfman McInnes int i,ierr,N, *rows,*owners = l->rowners,size = l->size; 2568965ea79SLois Curfman McInnes int *procs,*nprocs,j,found,idx,nsends,*work; 2578965ea79SLois Curfman McInnes int nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank; 2588965ea79SLois Curfman McInnes int *rvalues,tag = A->tag,count,base,slen,n,*source; 2598965ea79SLois Curfman McInnes int *lens,imdex,*lrows,*values; 2608965ea79SLois Curfman McInnes MPI_Comm comm = A->comm; 2618965ea79SLois Curfman McInnes MPI_Request *send_waits,*recv_waits; 2628965ea79SLois Curfman McInnes MPI_Status recv_status,*send_status; 2638965ea79SLois Curfman McInnes IS istmp; 2648965ea79SLois Curfman McInnes 26577c4ece6SBarry Smith ierr = ISGetSize(is,&N); CHKERRQ(ierr); 2668965ea79SLois Curfman McInnes ierr = ISGetIndices(is,&rows); CHKERRQ(ierr); 2678965ea79SLois Curfman McInnes 2688965ea79SLois Curfman McInnes /* first count number of contributors to each processor */ 2690452661fSBarry Smith nprocs = (int *) PetscMalloc( 2*size*sizeof(int) ); CHKPTRQ(nprocs); 270cddf8d76SBarry Smith PetscMemzero(nprocs,2*size*sizeof(int)); procs = nprocs + size; 2710452661fSBarry Smith owner = (int *) PetscMalloc((N+1)*sizeof(int)); CHKPTRQ(owner); /* see note*/ 2728965ea79SLois Curfman McInnes for ( i=0; i<N; i++ ) { 2738965ea79SLois Curfman McInnes idx = rows[i]; 2748965ea79SLois Curfman McInnes found = 0; 2758965ea79SLois Curfman McInnes for ( j=0; j<size; j++ ) { 2768965ea79SLois Curfman McInnes if (idx >= owners[j] && idx < owners[j+1]) { 2778965ea79SLois Curfman McInnes nprocs[j]++; procs[j] = 1; owner[i] = j; found = 1; break; 2788965ea79SLois Curfman McInnes } 2798965ea79SLois Curfman McInnes } 28039ddd567SLois Curfman McInnes if (!found) SETERRQ(1,"MatZeroRows_MPIDense:Index out of range"); 2818965ea79SLois Curfman McInnes } 2828965ea79SLois Curfman McInnes nsends = 0; for ( i=0; i<size; i++ ) { nsends += procs[i];} 2838965ea79SLois Curfman McInnes 2848965ea79SLois Curfman McInnes /* inform other processors of number of messages and max length*/ 2850452661fSBarry Smith work = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(work); 2868965ea79SLois Curfman McInnes MPI_Allreduce( procs, work,size,MPI_INT,MPI_SUM,comm); 2878965ea79SLois Curfman McInnes nrecvs = work[rank]; 2888965ea79SLois Curfman McInnes MPI_Allreduce( nprocs, work,size,MPI_INT,MPI_MAX,comm); 2898965ea79SLois Curfman McInnes nmax = work[rank]; 2900452661fSBarry Smith PetscFree(work); 2918965ea79SLois Curfman McInnes 2928965ea79SLois Curfman McInnes /* post receives: */ 2930452661fSBarry Smith rvalues = (int *) PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(int)); /*see note */ 2948965ea79SLois Curfman McInnes CHKPTRQ(rvalues); 2950452661fSBarry Smith recv_waits = (MPI_Request *) PetscMalloc((nrecvs+1)*sizeof(MPI_Request)); 2968965ea79SLois Curfman McInnes CHKPTRQ(recv_waits); 2978965ea79SLois Curfman McInnes for ( i=0; i<nrecvs; i++ ) { 2988965ea79SLois Curfman McInnes MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i); 2998965ea79SLois Curfman McInnes } 3008965ea79SLois Curfman McInnes 3018965ea79SLois Curfman McInnes /* do sends: 3028965ea79SLois Curfman McInnes 1) starts[i] gives the starting index in svalues for stuff going to 3038965ea79SLois Curfman McInnes the ith processor 3048965ea79SLois Curfman McInnes */ 3050452661fSBarry Smith svalues = (int *) PetscMalloc( (N+1)*sizeof(int) ); CHKPTRQ(svalues); 3067056b6fcSBarry Smith send_waits = (MPI_Request *) PetscMalloc((nsends+1)*sizeof(MPI_Request));CHKPTRQ(send_waits); 3070452661fSBarry Smith starts = (int *) PetscMalloc( (size+1)*sizeof(int) ); CHKPTRQ(starts); 3088965ea79SLois Curfman McInnes starts[0] = 0; 3098965ea79SLois Curfman McInnes for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 3108965ea79SLois Curfman McInnes for ( i=0; i<N; i++ ) { 3118965ea79SLois Curfman McInnes svalues[starts[owner[i]]++] = rows[i]; 3128965ea79SLois Curfman McInnes } 3138965ea79SLois Curfman McInnes ISRestoreIndices(is,&rows); 3148965ea79SLois Curfman McInnes 3158965ea79SLois Curfman McInnes starts[0] = 0; 3168965ea79SLois Curfman McInnes for ( i=1; i<size+1; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 3178965ea79SLois Curfman McInnes count = 0; 3188965ea79SLois Curfman McInnes for ( i=0; i<size; i++ ) { 3198965ea79SLois Curfman McInnes if (procs[i]) { 3208965ea79SLois Curfman McInnes MPI_Isend(svalues+starts[i],nprocs[i],MPI_INT,i,tag,comm,send_waits+count++); 3218965ea79SLois Curfman McInnes } 3228965ea79SLois Curfman McInnes } 3230452661fSBarry Smith PetscFree(starts); 3248965ea79SLois Curfman McInnes 3258965ea79SLois Curfman McInnes base = owners[rank]; 3268965ea79SLois Curfman McInnes 3278965ea79SLois Curfman McInnes /* wait on receives */ 3280452661fSBarry Smith lens = (int *) PetscMalloc( 2*(nrecvs+1)*sizeof(int) ); CHKPTRQ(lens); 3298965ea79SLois Curfman McInnes source = lens + nrecvs; 3308965ea79SLois Curfman McInnes count = nrecvs; slen = 0; 3318965ea79SLois Curfman McInnes while (count) { 3328965ea79SLois Curfman McInnes MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status); 3338965ea79SLois Curfman McInnes /* unpack receives into our local space */ 3348965ea79SLois Curfman McInnes MPI_Get_count(&recv_status,MPI_INT,&n); 3358965ea79SLois Curfman McInnes source[imdex] = recv_status.MPI_SOURCE; 3368965ea79SLois Curfman McInnes lens[imdex] = n; 3378965ea79SLois Curfman McInnes slen += n; 3388965ea79SLois Curfman McInnes count--; 3398965ea79SLois Curfman McInnes } 3400452661fSBarry Smith PetscFree(recv_waits); 3418965ea79SLois Curfman McInnes 3428965ea79SLois Curfman McInnes /* move the data into the send scatter */ 3430452661fSBarry Smith lrows = (int *) PetscMalloc( (slen+1)*sizeof(int) ); CHKPTRQ(lrows); 3448965ea79SLois Curfman McInnes count = 0; 3458965ea79SLois Curfman McInnes for ( i=0; i<nrecvs; i++ ) { 3468965ea79SLois Curfman McInnes values = rvalues + i*nmax; 3478965ea79SLois Curfman McInnes for ( j=0; j<lens[i]; j++ ) { 3488965ea79SLois Curfman McInnes lrows[count++] = values[j] - base; 3498965ea79SLois Curfman McInnes } 3508965ea79SLois Curfman McInnes } 3510452661fSBarry Smith PetscFree(rvalues); PetscFree(lens); 3520452661fSBarry Smith PetscFree(owner); PetscFree(nprocs); 3538965ea79SLois Curfman McInnes 3548965ea79SLois Curfman McInnes /* actually zap the local rows */ 355537820f0SBarry Smith ierr = ISCreateGeneral(MPI_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr); 3568965ea79SLois Curfman McInnes PLogObjectParent(A,istmp); 3570452661fSBarry Smith PetscFree(lrows); 3588965ea79SLois Curfman McInnes ierr = MatZeroRows(l->A,istmp,diag); CHKERRQ(ierr); 3598965ea79SLois Curfman McInnes ierr = ISDestroy(istmp); CHKERRQ(ierr); 3608965ea79SLois Curfman McInnes 3618965ea79SLois Curfman McInnes /* wait on sends */ 3628965ea79SLois Curfman McInnes if (nsends) { 3637056b6fcSBarry Smith send_status = (MPI_Status *) PetscMalloc(nsends*sizeof(MPI_Status));CHKPTRQ(send_status); 3648965ea79SLois Curfman McInnes MPI_Waitall(nsends,send_waits,send_status); 3650452661fSBarry Smith PetscFree(send_status); 3668965ea79SLois Curfman McInnes } 3670452661fSBarry Smith PetscFree(send_waits); PetscFree(svalues); 3688965ea79SLois Curfman McInnes 3698965ea79SLois Curfman McInnes return 0; 3708965ea79SLois Curfman McInnes } 3718965ea79SLois Curfman McInnes 37239ddd567SLois Curfman McInnes static int MatMult_MPIDense(Mat mat,Vec xx,Vec yy) 3738965ea79SLois Curfman McInnes { 37439ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data; 3758965ea79SLois Curfman McInnes int ierr; 376c456f294SBarry Smith 3777056b6fcSBarry Smith ierr = VecScatterBegin(xx,mdn->lvec,INSERT_VALUES,SCATTER_ALL,mdn->Mvctx);CHKERRQ(ierr); 3787056b6fcSBarry Smith ierr = VecScatterEnd(xx,mdn->lvec,INSERT_VALUES,SCATTER_ALL,mdn->Mvctx);CHKERRQ(ierr); 37944cd7ae7SLois Curfman McInnes ierr = MatMult_SeqDense(mdn->A,mdn->lvec,yy); CHKERRQ(ierr); 3808965ea79SLois Curfman McInnes return 0; 3818965ea79SLois Curfman McInnes } 3828965ea79SLois Curfman McInnes 38339ddd567SLois Curfman McInnes static int MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz) 3848965ea79SLois Curfman McInnes { 38539ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data; 3868965ea79SLois Curfman McInnes int ierr; 387c456f294SBarry Smith 388c456f294SBarry Smith ierr = VecScatterBegin(xx,mdn->lvec,INSERT_VALUES,SCATTER_ALL,mdn->Mvctx);CHKERRQ(ierr); 389c456f294SBarry Smith ierr = VecScatterEnd(xx,mdn->lvec,INSERT_VALUES,SCATTER_ALL,mdn->Mvctx);CHKERRQ(ierr); 39044cd7ae7SLois Curfman McInnes ierr = MatMultAdd_SeqDense(mdn->A,mdn->lvec,yy,zz); CHKERRQ(ierr); 3918965ea79SLois Curfman McInnes return 0; 3928965ea79SLois Curfman McInnes } 3938965ea79SLois Curfman McInnes 394096963f5SLois Curfman McInnes static int MatMultTrans_MPIDense(Mat A,Vec xx,Vec yy) 395096963f5SLois Curfman McInnes { 396096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense *) A->data; 397096963f5SLois Curfman McInnes int ierr; 3983501a2bdSLois Curfman McInnes Scalar zero = 0.0; 399096963f5SLois Curfman McInnes 4003501a2bdSLois Curfman McInnes ierr = VecSet(&zero,yy); CHKERRQ(ierr); 40144cd7ae7SLois Curfman McInnes ierr = MatMultTrans_SeqDense(a->A,xx,a->lvec); CHKERRQ(ierr); 402537820f0SBarry Smith ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr); 403537820f0SBarry Smith ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr); 404096963f5SLois Curfman McInnes return 0; 405096963f5SLois Curfman McInnes } 406096963f5SLois Curfman McInnes 407096963f5SLois Curfman McInnes static int MatMultTransAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz) 408096963f5SLois Curfman McInnes { 409096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense *) A->data; 410096963f5SLois Curfman McInnes int ierr; 411096963f5SLois Curfman McInnes 4123501a2bdSLois Curfman McInnes ierr = VecCopy(yy,zz); CHKERRQ(ierr); 41344cd7ae7SLois Curfman McInnes ierr = MatMultTrans_SeqDense(a->A,xx,a->lvec); CHKERRQ(ierr); 414537820f0SBarry Smith ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr); 415537820f0SBarry Smith ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr); 416096963f5SLois Curfman McInnes return 0; 417096963f5SLois Curfman McInnes } 418096963f5SLois Curfman McInnes 41939ddd567SLois Curfman McInnes static int MatGetDiagonal_MPIDense(Mat A,Vec v) 4208965ea79SLois Curfman McInnes { 42139ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense *) A->data; 422096963f5SLois Curfman McInnes Mat_SeqDense *aloc = (Mat_SeqDense *) a->A->data; 42344cd7ae7SLois Curfman McInnes int ierr, len, i, n, m = a->m, radd; 42444cd7ae7SLois Curfman McInnes Scalar *x, zero = 0.0; 425ed3cc1f0SBarry Smith 42644cd7ae7SLois Curfman McInnes VecSet(&zero,v); 427096963f5SLois Curfman McInnes ierr = VecGetArray(v,&x); CHKERRQ(ierr); 428096963f5SLois Curfman McInnes ierr = VecGetSize(v,&n); CHKERRQ(ierr); 429096963f5SLois Curfman McInnes if (n != a->M) SETERRQ(1,"MatGetDiagonal_SeqDense:Nonconforming mat and vec"); 43044cd7ae7SLois Curfman McInnes len = PetscMin(aloc->m,aloc->n); 4317ddc982cSLois Curfman McInnes radd = a->rstart*m; 43244cd7ae7SLois Curfman McInnes for ( i=0; i<len; i++ ) { 433096963f5SLois Curfman McInnes x[i] = aloc->v[radd + i*m + i]; 434096963f5SLois Curfman McInnes } 435096963f5SLois Curfman McInnes return 0; 4368965ea79SLois Curfman McInnes } 4378965ea79SLois Curfman McInnes 43839ddd567SLois Curfman McInnes static int MatDestroy_MPIDense(PetscObject obj) 4398965ea79SLois Curfman McInnes { 4408965ea79SLois Curfman McInnes Mat mat = (Mat) obj; 4413501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data; 4428965ea79SLois Curfman McInnes int ierr; 443ed3cc1f0SBarry Smith 4448965ea79SLois Curfman McInnes #if defined(PETSC_LOG) 4453501a2bdSLois Curfman McInnes PLogObjectState(obj,"Rows=%d, Cols=%d",mdn->M,mdn->N); 4468965ea79SLois Curfman McInnes #endif 4470452661fSBarry Smith PetscFree(mdn->rowners); 4483501a2bdSLois Curfman McInnes ierr = MatDestroy(mdn->A); CHKERRQ(ierr); 4493501a2bdSLois Curfman McInnes if (mdn->lvec) VecDestroy(mdn->lvec); 4503501a2bdSLois Curfman McInnes if (mdn->Mvctx) VecScatterDestroy(mdn->Mvctx); 451622d7880SLois Curfman McInnes if (mdn->factor) { 452622d7880SLois Curfman McInnes if (mdn->factor->temp) PetscFree(mdn->factor->temp); 453622d7880SLois Curfman McInnes if (mdn->factor->tag) PetscFree(mdn->factor->tag); 454622d7880SLois Curfman McInnes if (mdn->factor->pivots) PetscFree(mdn->factor->pivots); 455622d7880SLois Curfman McInnes PetscFree(mdn->factor); 456622d7880SLois Curfman McInnes } 4570452661fSBarry Smith PetscFree(mdn); 4588965ea79SLois Curfman McInnes PLogObjectDestroy(mat); 4590452661fSBarry Smith PetscHeaderDestroy(mat); 4608965ea79SLois Curfman McInnes return 0; 4618965ea79SLois Curfman McInnes } 46239ddd567SLois Curfman McInnes 4638965ea79SLois Curfman McInnes #include "pinclude/pviewer.h" 4648965ea79SLois Curfman McInnes 46539ddd567SLois Curfman McInnes static int MatView_MPIDense_Binary(Mat mat,Viewer viewer) 4668965ea79SLois Curfman McInnes { 46739ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data; 4688965ea79SLois Curfman McInnes int ierr; 4697056b6fcSBarry Smith 47039ddd567SLois Curfman McInnes if (mdn->size == 1) { 47139ddd567SLois Curfman McInnes ierr = MatView(mdn->A,viewer); CHKERRQ(ierr); 4728965ea79SLois Curfman McInnes } 47339ddd567SLois Curfman McInnes else SETERRQ(1,"MatView_MPIDense_Binary:Only uniprocessor output supported"); 4748965ea79SLois Curfman McInnes return 0; 4758965ea79SLois Curfman McInnes } 4768965ea79SLois Curfman McInnes 47739ddd567SLois Curfman McInnes static int MatView_MPIDense_ASCII(Mat mat,Viewer viewer) 4788965ea79SLois Curfman McInnes { 47939ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data; 48039ddd567SLois Curfman McInnes int ierr, format; 4818965ea79SLois Curfman McInnes FILE *fd; 48219bcc07fSBarry Smith ViewerType vtype; 4838965ea79SLois Curfman McInnes 48419bcc07fSBarry Smith ViewerGetType(viewer,&vtype); 48590ace30eSBarry Smith ierr = ViewerASCIIGetPointer(viewer,&fd); CHKERRQ(ierr); 48690ace30eSBarry Smith ierr = ViewerGetFormat(viewer,&format); 48790ace30eSBarry Smith if (format == ASCII_FORMAT_INFO_DETAILED) { 488*4e220ebcSLois Curfman McInnes int rank; 489*4e220ebcSLois Curfman McInnes MatInfo info; 490096963f5SLois Curfman McInnes MPI_Comm_rank(mat->comm,&rank); 491*4e220ebcSLois Curfman McInnes ierr = MatGetInfo(mat,MAT_LOCAL,&info); 49277c4ece6SBarry Smith PetscSequentialPhaseBegin(mat->comm,1); 493*4e220ebcSLois Curfman McInnes fprintf(fd," [%d] local rows %d nz %d nz alloced %d mem %d \n",rank,mdn->m, 494*4e220ebcSLois Curfman McInnes (int)info.nz_used,(int)info.nz_allocated,(int)info.memory); 495096963f5SLois Curfman McInnes fflush(fd); 49677c4ece6SBarry Smith PetscSequentialPhaseEnd(mat->comm,1); 4973501a2bdSLois Curfman McInnes ierr = VecScatterView(mdn->Mvctx,viewer); CHKERRQ(ierr); 4983501a2bdSLois Curfman McInnes return 0; 4993501a2bdSLois Curfman McInnes } 50090ace30eSBarry Smith else if (format == ASCII_FORMAT_INFO) { 501096963f5SLois Curfman McInnes return 0; 5028965ea79SLois Curfman McInnes } 50319bcc07fSBarry Smith if (vtype == ASCII_FILE_VIEWER) { 50477c4ece6SBarry Smith PetscSequentialPhaseBegin(mat->comm,1); 50539ddd567SLois Curfman McInnes fprintf(fd,"[%d] rows %d starts %d ends %d cols %d\n", 50639ddd567SLois Curfman McInnes mdn->rank,mdn->m,mdn->rstart,mdn->rend,mdn->n); 50739ddd567SLois Curfman McInnes ierr = MatView(mdn->A,viewer); CHKERRQ(ierr); 5088965ea79SLois Curfman McInnes fflush(fd); 50977c4ece6SBarry Smith PetscSequentialPhaseEnd(mat->comm,1); 5108965ea79SLois Curfman McInnes } 5118965ea79SLois Curfman McInnes else { 51239ddd567SLois Curfman McInnes int size = mdn->size, rank = mdn->rank; 5138965ea79SLois Curfman McInnes if (size == 1) { 51439ddd567SLois Curfman McInnes ierr = MatView(mdn->A,viewer); CHKERRQ(ierr); 5158965ea79SLois Curfman McInnes } 5168965ea79SLois Curfman McInnes else { 5178965ea79SLois Curfman McInnes /* assemble the entire matrix onto first processor. */ 5188965ea79SLois Curfman McInnes Mat A; 51939ddd567SLois Curfman McInnes int M = mdn->M, N = mdn->N,m,row,i, nz, *cols; 52039ddd567SLois Curfman McInnes Scalar *vals; 52139ddd567SLois Curfman McInnes Mat_SeqDense *Amdn = (Mat_SeqDense*) mdn->A->data; 5228965ea79SLois Curfman McInnes 5238965ea79SLois Curfman McInnes if (!rank) { 524b4fd4287SBarry Smith ierr = MatCreateMPIDense(mat->comm,M,M,N,N,PETSC_NULL,&A); CHKERRQ(ierr); 5258965ea79SLois Curfman McInnes } 5268965ea79SLois Curfman McInnes else { 527b4fd4287SBarry Smith ierr = MatCreateMPIDense(mat->comm,0,M,N,N,PETSC_NULL,&A); CHKERRQ(ierr); 5288965ea79SLois Curfman McInnes } 5298965ea79SLois Curfman McInnes PLogObjectParent(mat,A); 5308965ea79SLois Curfman McInnes 53139ddd567SLois Curfman McInnes /* Copy the matrix ... This isn't the most efficient means, 53239ddd567SLois Curfman McInnes but it's quick for now */ 53339ddd567SLois Curfman McInnes row = mdn->rstart; m = Amdn->m; 5348965ea79SLois Curfman McInnes for ( i=0; i<m; i++ ) { 53539ddd567SLois Curfman McInnes ierr = MatGetRow(mat,row,&nz,&cols,&vals); CHKERRQ(ierr); 53639ddd567SLois Curfman McInnes ierr = MatSetValues(A,1,&row,nz,cols,vals,INSERT_VALUES); CHKERRQ(ierr); 53739ddd567SLois Curfman McInnes ierr = MatRestoreRow(mat,row,&nz,&cols,&vals); CHKERRQ(ierr); 53839ddd567SLois Curfman McInnes row++; 5398965ea79SLois Curfman McInnes } 5408965ea79SLois Curfman McInnes 5416d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 5426d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 5438965ea79SLois Curfman McInnes if (!rank) { 54439ddd567SLois Curfman McInnes ierr = MatView(((Mat_MPIDense*)(A->data))->A,viewer); CHKERRQ(ierr); 5458965ea79SLois Curfman McInnes } 5468965ea79SLois Curfman McInnes ierr = MatDestroy(A); CHKERRQ(ierr); 5478965ea79SLois Curfman McInnes } 5488965ea79SLois Curfman McInnes } 5498965ea79SLois Curfman McInnes return 0; 5508965ea79SLois Curfman McInnes } 5518965ea79SLois Curfman McInnes 55239ddd567SLois Curfman McInnes static int MatView_MPIDense(PetscObject obj,Viewer viewer) 5538965ea79SLois Curfman McInnes { 5548965ea79SLois Curfman McInnes Mat mat = (Mat) obj; 55539ddd567SLois Curfman McInnes int ierr; 556bcd2baecSBarry Smith ViewerType vtype; 5578965ea79SLois Curfman McInnes 558bcd2baecSBarry Smith ierr = ViewerGetType(viewer,&vtype); CHKERRQ(ierr); 559bcd2baecSBarry Smith if (vtype == ASCII_FILE_VIEWER) { 56039ddd567SLois Curfman McInnes ierr = MatView_MPIDense_ASCII(mat,viewer); CHKERRQ(ierr); 5618965ea79SLois Curfman McInnes } 562bcd2baecSBarry Smith else if (vtype == ASCII_FILES_VIEWER) { 56339ddd567SLois Curfman McInnes ierr = MatView_MPIDense_ASCII(mat,viewer); CHKERRQ(ierr); 5648965ea79SLois Curfman McInnes } 565bcd2baecSBarry Smith else if (vtype == BINARY_FILE_VIEWER) { 56639ddd567SLois Curfman McInnes return MatView_MPIDense_Binary(mat,viewer); 5678965ea79SLois Curfman McInnes } 5688965ea79SLois Curfman McInnes return 0; 5698965ea79SLois Curfman McInnes } 5708965ea79SLois Curfman McInnes 571*4e220ebcSLois Curfman McInnes static int MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info) 5728965ea79SLois Curfman McInnes { 5733501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense *) A->data; 5743501a2bdSLois Curfman McInnes Mat mdn = mat->A; 575*4e220ebcSLois Curfman McInnes int ierr; 576*4e220ebcSLois Curfman McInnes double isend[5], irecv[5]; 5778965ea79SLois Curfman McInnes 578*4e220ebcSLois Curfman McInnes info->rows_global = (double)mat->M; 579*4e220ebcSLois Curfman McInnes info->columns_global = (double)mat->N; 580*4e220ebcSLois Curfman McInnes info->rows_local = (double)mat->m; 581*4e220ebcSLois Curfman McInnes info->columns_local = (double)mat->N; 582*4e220ebcSLois Curfman McInnes info->block_size = 1.0; 583*4e220ebcSLois Curfman McInnes ierr = MatGetInfo(mdn,MAT_LOCAL,info); CHKERRQ(ierr); 584*4e220ebcSLois Curfman McInnes isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 585*4e220ebcSLois Curfman McInnes isend[3] = info->memory; isend[4] = info->mallocs; 5868965ea79SLois Curfman McInnes if (flag == MAT_LOCAL) { 587*4e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 588*4e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 589*4e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 590*4e220ebcSLois Curfman McInnes info->memory = isend[3]; 591*4e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 5928965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 5933501a2bdSLois Curfman McInnes MPI_Allreduce(isend,irecv,3,MPI_INT,MPI_MAX,A->comm); 594*4e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 595*4e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 596*4e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 597*4e220ebcSLois Curfman McInnes info->memory = irecv[3]; 598*4e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 5998965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 6003501a2bdSLois Curfman McInnes MPI_Allreduce(isend,irecv,3,MPI_INT,MPI_SUM,A->comm); 601*4e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 602*4e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 603*4e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 604*4e220ebcSLois Curfman McInnes info->memory = irecv[3]; 605*4e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 6068965ea79SLois Curfman McInnes } 607*4e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 608*4e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 609*4e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 6108965ea79SLois Curfman McInnes return 0; 6118965ea79SLois Curfman McInnes } 6128965ea79SLois Curfman McInnes 6138c469469SLois Curfman McInnes /* extern int MatLUFactorSymbolic_MPIDense(Mat,IS,IS,double,Mat*); 6148aaee692SLois Curfman McInnes extern int MatLUFactorNumeric_MPIDense(Mat,Mat*); 6158aaee692SLois Curfman McInnes extern int MatLUFactor_MPIDense(Mat,IS,IS,double); 6168aaee692SLois Curfman McInnes extern int MatSolve_MPIDense(Mat,Vec,Vec); 6178c469469SLois Curfman McInnes extern int MatSolveAdd_MPIDense(Mat,Vec,Vec,Vec); 6188aaee692SLois Curfman McInnes extern int MatSolveTrans_MPIDense(Mat,Vec,Vec); 6198aaee692SLois Curfman McInnes extern int MatSolveTransAdd_MPIDense(Mat,Vec,Vec,Vec); */ 6208aaee692SLois Curfman McInnes 62139ddd567SLois Curfman McInnes static int MatSetOption_MPIDense(Mat A,MatOption op) 6228965ea79SLois Curfman McInnes { 62339ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense *) A->data; 6248965ea79SLois Curfman McInnes 6256d4a8577SBarry Smith if (op == MAT_NO_NEW_NONZERO_LOCATIONS || 6266d4a8577SBarry Smith op == MAT_YES_NEW_NONZERO_LOCATIONS || 6276d4a8577SBarry Smith op == MAT_COLUMNS_SORTED || 6286d4a8577SBarry Smith op == MAT_ROW_ORIENTED) { 6298965ea79SLois Curfman McInnes MatSetOption(a->A,op); 6308965ea79SLois Curfman McInnes } 6316d4a8577SBarry Smith else if (op == MAT_ROWS_SORTED || 6326d4a8577SBarry Smith op == MAT_SYMMETRIC || 6336d4a8577SBarry Smith op == MAT_STRUCTURALLY_SYMMETRIC || 6346d4a8577SBarry Smith op == MAT_YES_NEW_DIAGONALS) 63594a424c1SBarry Smith PLogInfo(A,"Info:MatSetOption_MPIDense:Option ignored\n"); 6366d4a8577SBarry Smith else if (op == MAT_COLUMN_ORIENTED) 63739b7565bSBarry Smith { a->roworiented = 0; MatSetOption(a->A,op);} 6386d4a8577SBarry Smith else if (op == MAT_NO_NEW_DIAGONALS) 6396d4a8577SBarry Smith {SETERRQ(PETSC_ERR_SUP,"MatSetOption_MPIDense:MAT_NO_NEW_DIAGONALS");} 6408965ea79SLois Curfman McInnes else 64139ddd567SLois Curfman McInnes {SETERRQ(PETSC_ERR_SUP,"MatSetOption_MPIDense:unknown option");} 6428965ea79SLois Curfman McInnes return 0; 6438965ea79SLois Curfman McInnes } 6448965ea79SLois Curfman McInnes 6453501a2bdSLois Curfman McInnes static int MatGetSize_MPIDense(Mat A,int *m,int *n) 6468965ea79SLois Curfman McInnes { 6473501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense *) A->data; 6488965ea79SLois Curfman McInnes *m = mat->M; *n = mat->N; 6498965ea79SLois Curfman McInnes return 0; 6508965ea79SLois Curfman McInnes } 6518965ea79SLois Curfman McInnes 6523501a2bdSLois Curfman McInnes static int MatGetLocalSize_MPIDense(Mat A,int *m,int *n) 6538965ea79SLois Curfman McInnes { 6543501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense *) A->data; 6558965ea79SLois Curfman McInnes *m = mat->m; *n = mat->N; 6568965ea79SLois Curfman McInnes return 0; 6578965ea79SLois Curfman McInnes } 6588965ea79SLois Curfman McInnes 6593501a2bdSLois Curfman McInnes static int MatGetOwnershipRange_MPIDense(Mat A,int *m,int *n) 6608965ea79SLois Curfman McInnes { 6613501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense *) A->data; 6628965ea79SLois Curfman McInnes *m = mat->rstart; *n = mat->rend; 6638965ea79SLois Curfman McInnes return 0; 6648965ea79SLois Curfman McInnes } 6658965ea79SLois Curfman McInnes 6663501a2bdSLois Curfman McInnes static int MatGetRow_MPIDense(Mat A,int row,int *nz,int **idx,Scalar **v) 6678965ea79SLois Curfman McInnes { 6683501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense *) A->data; 66939ddd567SLois Curfman McInnes int lrow, rstart = mat->rstart, rend = mat->rend; 6708965ea79SLois Curfman McInnes 67139ddd567SLois Curfman McInnes if (row < rstart || row >= rend) SETERRQ(1,"MatGetRow_MPIDense:only local rows") 6728965ea79SLois Curfman McInnes lrow = row - rstart; 67339ddd567SLois Curfman McInnes return MatGetRow(mat->A,lrow,nz,idx,v); 6748965ea79SLois Curfman McInnes } 6758965ea79SLois Curfman McInnes 67639ddd567SLois Curfman McInnes static int MatRestoreRow_MPIDense(Mat mat,int row,int *nz,int **idx,Scalar **v) 6778965ea79SLois Curfman McInnes { 6780452661fSBarry Smith if (idx) PetscFree(*idx); 6790452661fSBarry Smith if (v) PetscFree(*v); 6808965ea79SLois Curfman McInnes return 0; 6818965ea79SLois Curfman McInnes } 6828965ea79SLois Curfman McInnes 683cddf8d76SBarry Smith static int MatNorm_MPIDense(Mat A,NormType type,double *norm) 684096963f5SLois Curfman McInnes { 6853501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *) A->data; 6863501a2bdSLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*) mdn->A->data; 6873501a2bdSLois Curfman McInnes int ierr, i, j; 6883501a2bdSLois Curfman McInnes double sum = 0.0; 6893501a2bdSLois Curfman McInnes Scalar *v = mat->v; 6903501a2bdSLois Curfman McInnes 6913501a2bdSLois Curfman McInnes if (mdn->size == 1) { 6923501a2bdSLois Curfman McInnes ierr = MatNorm(mdn->A,type,norm); CHKERRQ(ierr); 6933501a2bdSLois Curfman McInnes } else { 6943501a2bdSLois Curfman McInnes if (type == NORM_FROBENIUS) { 6953501a2bdSLois Curfman McInnes for (i=0; i<mat->n*mat->m; i++ ) { 6963501a2bdSLois Curfman McInnes #if defined(PETSC_COMPLEX) 6973501a2bdSLois Curfman McInnes sum += real(conj(*v)*(*v)); v++; 6983501a2bdSLois Curfman McInnes #else 6993501a2bdSLois Curfman McInnes sum += (*v)*(*v); v++; 7003501a2bdSLois Curfman McInnes #endif 7013501a2bdSLois Curfman McInnes } 7026d84be18SBarry Smith MPI_Allreduce(&sum,norm,1,MPI_DOUBLE,MPI_SUM,A->comm); 7033501a2bdSLois Curfman McInnes *norm = sqrt(*norm); 7043501a2bdSLois Curfman McInnes PLogFlops(2*mat->n*mat->m); 7053501a2bdSLois Curfman McInnes } 7063501a2bdSLois Curfman McInnes else if (type == NORM_1) { 7073501a2bdSLois Curfman McInnes double *tmp, *tmp2; 7080452661fSBarry Smith tmp = (double *) PetscMalloc( 2*mdn->N*sizeof(double) ); CHKPTRQ(tmp); 7093501a2bdSLois Curfman McInnes tmp2 = tmp + mdn->N; 710cddf8d76SBarry Smith PetscMemzero(tmp,2*mdn->N*sizeof(double)); 711096963f5SLois Curfman McInnes *norm = 0.0; 7123501a2bdSLois Curfman McInnes v = mat->v; 7133501a2bdSLois Curfman McInnes for ( j=0; j<mat->n; j++ ) { 7143501a2bdSLois Curfman McInnes for ( i=0; i<mat->m; i++ ) { 71567e560aaSBarry Smith tmp[j] += PetscAbsScalar(*v); v++; 7163501a2bdSLois Curfman McInnes } 7173501a2bdSLois Curfman McInnes } 7186d84be18SBarry Smith MPI_Allreduce(tmp,tmp2,mdn->N,MPI_DOUBLE,MPI_SUM,A->comm); 7193501a2bdSLois Curfman McInnes for ( j=0; j<mdn->N; j++ ) { 7203501a2bdSLois Curfman McInnes if (tmp2[j] > *norm) *norm = tmp2[j]; 7213501a2bdSLois Curfman McInnes } 7220452661fSBarry Smith PetscFree(tmp); 7233501a2bdSLois Curfman McInnes PLogFlops(mat->n*mat->m); 7243501a2bdSLois Curfman McInnes } 7253501a2bdSLois Curfman McInnes else if (type == NORM_INFINITY) { /* max row norm */ 7263501a2bdSLois Curfman McInnes double ntemp; 7273501a2bdSLois Curfman McInnes ierr = MatNorm(mdn->A,type,&ntemp); CHKERRQ(ierr); 7286d84be18SBarry Smith MPI_Allreduce(&ntemp,norm,1,MPI_DOUBLE,MPI_MAX,A->comm); 7293501a2bdSLois Curfman McInnes } 7303501a2bdSLois Curfman McInnes else { 7313501a2bdSLois Curfman McInnes SETERRQ(1,"MatNorm_MPIDense:No support for two norm"); 7323501a2bdSLois Curfman McInnes } 7333501a2bdSLois Curfman McInnes } 7343501a2bdSLois Curfman McInnes return 0; 7353501a2bdSLois Curfman McInnes } 7363501a2bdSLois Curfman McInnes 7373501a2bdSLois Curfman McInnes static int MatTranspose_MPIDense(Mat A,Mat *matout) 7383501a2bdSLois Curfman McInnes { 7393501a2bdSLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense *) A->data; 7403501a2bdSLois Curfman McInnes Mat_SeqDense *Aloc = (Mat_SeqDense *) a->A->data; 7413501a2bdSLois Curfman McInnes Mat B; 7423501a2bdSLois Curfman McInnes int M = a->M, N = a->N, m, n, *rwork, rstart = a->rstart; 7433501a2bdSLois Curfman McInnes int j, i, ierr; 7443501a2bdSLois Curfman McInnes Scalar *v; 7453501a2bdSLois Curfman McInnes 7467056b6fcSBarry Smith if (matout == PETSC_NULL && M != N) { 7473501a2bdSLois Curfman McInnes SETERRQ(1,"MatTranspose_MPIDense:Supports square matrix only in-place"); 7487056b6fcSBarry Smith } 7497056b6fcSBarry Smith ierr = MatCreateMPIDense(A->comm,PETSC_DECIDE,PETSC_DECIDE,N,M,PETSC_NULL,&B);CHKERRQ(ierr); 7503501a2bdSLois Curfman McInnes 7513501a2bdSLois Curfman McInnes m = Aloc->m; n = Aloc->n; v = Aloc->v; 7520452661fSBarry Smith rwork = (int *) PetscMalloc(n*sizeof(int)); CHKPTRQ(rwork); 7533501a2bdSLois Curfman McInnes for ( j=0; j<n; j++ ) { 7543501a2bdSLois Curfman McInnes for (i=0; i<m; i++) rwork[i] = rstart + i; 7553501a2bdSLois Curfman McInnes ierr = MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES); CHKERRQ(ierr); 7563501a2bdSLois Curfman McInnes v += m; 7573501a2bdSLois Curfman McInnes } 7580452661fSBarry Smith PetscFree(rwork); 7596d4a8577SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 7606d4a8577SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 7613638b69dSLois Curfman McInnes if (matout != PETSC_NULL) { 7623501a2bdSLois Curfman McInnes *matout = B; 7633501a2bdSLois Curfman McInnes } else { 7643501a2bdSLois Curfman McInnes /* This isn't really an in-place transpose, but free data struct from a */ 7650452661fSBarry Smith PetscFree(a->rowners); 7663501a2bdSLois Curfman McInnes ierr = MatDestroy(a->A); CHKERRQ(ierr); 7673501a2bdSLois Curfman McInnes if (a->lvec) VecDestroy(a->lvec); 7683501a2bdSLois Curfman McInnes if (a->Mvctx) VecScatterDestroy(a->Mvctx); 7690452661fSBarry Smith PetscFree(a); 7703501a2bdSLois Curfman McInnes PetscMemcpy(A,B,sizeof(struct _Mat)); 7710452661fSBarry Smith PetscHeaderDestroy(B); 7723501a2bdSLois Curfman McInnes } 773096963f5SLois Curfman McInnes return 0; 774096963f5SLois Curfman McInnes } 775096963f5SLois Curfman McInnes 77644cd7ae7SLois Curfman McInnes #include "pinclude/plapack.h" 77744cd7ae7SLois Curfman McInnes static int MatScale_MPIDense(Scalar *alpha,Mat inA) 77844cd7ae7SLois Curfman McInnes { 77944cd7ae7SLois Curfman McInnes Mat_MPIDense *A = (Mat_MPIDense *) inA->data; 78044cd7ae7SLois Curfman McInnes Mat_SeqDense *a = (Mat_SeqDense *) A->A->data; 78144cd7ae7SLois Curfman McInnes int one = 1, nz; 78244cd7ae7SLois Curfman McInnes 78344cd7ae7SLois Curfman McInnes nz = a->m*a->n; 78444cd7ae7SLois Curfman McInnes BLscal_( &nz, alpha, a->v, &one ); 78544cd7ae7SLois Curfman McInnes PLogFlops(nz); 78644cd7ae7SLois Curfman McInnes return 0; 78744cd7ae7SLois Curfman McInnes } 78844cd7ae7SLois Curfman McInnes 7893d1612f7SBarry Smith static int MatConvertSameType_MPIDense(Mat,Mat *,int); 7908965ea79SLois Curfman McInnes 7918965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/ 79239ddd567SLois Curfman McInnes static struct _MatOps MatOps = {MatSetValues_MPIDense, 79339ddd567SLois Curfman McInnes MatGetRow_MPIDense,MatRestoreRow_MPIDense, 79439ddd567SLois Curfman McInnes MatMult_MPIDense,MatMultAdd_MPIDense, 795096963f5SLois Curfman McInnes MatMultTrans_MPIDense,MatMultTransAdd_MPIDense, 796e7ca0642SLois Curfman McInnes /* MatSolve_MPIDense,0, */ 797e7ca0642SLois Curfman McInnes 0,0, 79839ddd567SLois Curfman McInnes 0,0, 7998c469469SLois Curfman McInnes 0,0, 8008c469469SLois Curfman McInnes /* MatLUFactor_MPIDense,0, */ 8018aaee692SLois Curfman McInnes 0,MatTranspose_MPIDense, 80239ddd567SLois Curfman McInnes MatGetInfo_MPIDense,0, 803096963f5SLois Curfman McInnes MatGetDiagonal_MPIDense,0,MatNorm_MPIDense, 80439ddd567SLois Curfman McInnes MatAssemblyBegin_MPIDense,MatAssemblyEnd_MPIDense, 8058965ea79SLois Curfman McInnes 0, 80639ddd567SLois Curfman McInnes MatSetOption_MPIDense,MatZeroEntries_MPIDense,MatZeroRows_MPIDense, 8078c469469SLois Curfman McInnes 0,0,0, 8088c469469SLois Curfman McInnes /* 0,MatLUFactorSymbolic_MPIDense,MatLUFactorNumeric_MPIDense, */ 8098aaee692SLois Curfman McInnes 0,0, 81039ddd567SLois Curfman McInnes MatGetSize_MPIDense,MatGetLocalSize_MPIDense, 81139ddd567SLois Curfman McInnes MatGetOwnershipRange_MPIDense, 812ff14e315SSatish Balay 0,0, MatGetArray_MPIDense, MatRestoreArray_MPIDense, 813905e6a2fSBarry Smith 0,MatConvertSameType_MPIDense, 814b49de8d1SLois Curfman McInnes 0,0,0,0,0, 815*4e220ebcSLois Curfman McInnes 0,0,MatGetValues_MPIDense,0,0,MatScale_MPIDense, 816*4e220ebcSLois Curfman McInnes 0,0,0,MatGetBlockSize_MPIDense}; 8178965ea79SLois Curfman McInnes 8188965ea79SLois Curfman McInnes /*@C 81939ddd567SLois Curfman McInnes MatCreateMPIDense - Creates a sparse parallel matrix in dense format. 8208965ea79SLois Curfman McInnes 8218965ea79SLois Curfman McInnes Input Parameters: 8228965ea79SLois Curfman McInnes . comm - MPI communicator 8238965ea79SLois Curfman McInnes . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 8248965ea79SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated 8258965ea79SLois Curfman McInnes if N is given) 8268965ea79SLois Curfman McInnes . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 8278965ea79SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated 8288965ea79SLois Curfman McInnes if n is given) 829b4fd4287SBarry Smith . data - optional location of matrix data. Set data=PETSC_NULL for PETSc 830dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 8318965ea79SLois Curfman McInnes 8328965ea79SLois Curfman McInnes Output Parameter: 833477f1c0bSLois Curfman McInnes . A - the matrix 8348965ea79SLois Curfman McInnes 8358965ea79SLois Curfman McInnes Notes: 83639ddd567SLois Curfman McInnes The dense format is fully compatible with standard Fortran 77 83739ddd567SLois Curfman McInnes storage by columns. 8388965ea79SLois Curfman McInnes 83918f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 84018f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 841b4fd4287SBarry Smith set data=PETSC_NULL. 84218f449edSLois Curfman McInnes 8438965ea79SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 8448965ea79SLois Curfman McInnes (possibly both). 8458965ea79SLois Curfman McInnes 8463501a2bdSLois Curfman McInnes Currently, the only parallel dense matrix decomposition is by rows, 8473501a2bdSLois Curfman McInnes so that n=N and each submatrix owns all of the global columns. 8483501a2bdSLois Curfman McInnes 84939ddd567SLois Curfman McInnes .keywords: matrix, dense, parallel 8508965ea79SLois Curfman McInnes 85139ddd567SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 8528965ea79SLois Curfman McInnes @*/ 853477f1c0bSLois Curfman McInnes int MatCreateMPIDense(MPI_Comm comm,int m,int n,int M,int N,Scalar *data,Mat *A) 8548965ea79SLois Curfman McInnes { 8558965ea79SLois Curfman McInnes Mat mat; 85639ddd567SLois Curfman McInnes Mat_MPIDense *a; 85725cdf11fSBarry Smith int ierr, i,flg; 8588965ea79SLois Curfman McInnes 859ed2daf61SLois Curfman McInnes /* Note: For now, when data is specified above, this assumes the user correctly 860ed2daf61SLois Curfman McInnes allocates the local dense storage space. We should add error checking. */ 86118f449edSLois Curfman McInnes 862477f1c0bSLois Curfman McInnes *A = 0; 8630452661fSBarry Smith PetscHeaderCreate(mat,_Mat,MAT_COOKIE,MATMPIDENSE,comm); 8648965ea79SLois Curfman McInnes PLogObjectCreate(mat); 8650452661fSBarry Smith mat->data = (void *) (a = PetscNew(Mat_MPIDense)); CHKPTRQ(a); 8668965ea79SLois Curfman McInnes PetscMemcpy(&mat->ops,&MatOps,sizeof(struct _MatOps)); 86739ddd567SLois Curfman McInnes mat->destroy = MatDestroy_MPIDense; 86839ddd567SLois Curfman McInnes mat->view = MatView_MPIDense; 8698965ea79SLois Curfman McInnes mat->factor = 0; 8708965ea79SLois Curfman McInnes 871622d7880SLois Curfman McInnes a->factor = 0; 8728965ea79SLois Curfman McInnes a->insertmode = NOT_SET_VALUES; 8738965ea79SLois Curfman McInnes MPI_Comm_rank(comm,&a->rank); 8748965ea79SLois Curfman McInnes MPI_Comm_size(comm,&a->size); 8758965ea79SLois Curfman McInnes 87639ddd567SLois Curfman McInnes if (M == PETSC_DECIDE) MPI_Allreduce(&m,&M,1,MPI_INT,MPI_SUM,comm); 8778965ea79SLois Curfman McInnes if (m == PETSC_DECIDE) {m = M/a->size + ((M % a->size) > a->rank);} 87839ddd567SLois Curfman McInnes 87939ddd567SLois Curfman McInnes /* each row stores all columns */ 88039ddd567SLois Curfman McInnes if (N == PETSC_DECIDE) N = n; 881d7e8b826SBarry Smith if (n == PETSC_DECIDE) {n = N/a->size + ((N % a->size) > a->rank);} 882d7e8b826SBarry Smith /* if (n != N) SETERRQ(1,"MatCreateMPIDense:For now, only n=N is supported"); */ 883aca0ad90SLois Curfman McInnes a->N = mat->N = N; 884aca0ad90SLois Curfman McInnes a->M = mat->M = M; 885aca0ad90SLois Curfman McInnes a->m = mat->m = m; 886aca0ad90SLois Curfman McInnes a->n = mat->n = n; 8878965ea79SLois Curfman McInnes 8888965ea79SLois Curfman McInnes /* build local table of row and column ownerships */ 889d7e8b826SBarry Smith a->rowners = (int *) PetscMalloc(2*(a->size+2)*sizeof(int)); CHKPTRQ(a->rowners); 890d7e8b826SBarry Smith a->cowners = a->rowners + a->size + 1; 8917056b6fcSBarry Smith PLogObjectMemory(mat,2*(a->size+2)*sizeof(int)+sizeof(struct _Mat)+sizeof(Mat_MPIDense)); 8928965ea79SLois Curfman McInnes MPI_Allgather(&m,1,MPI_INT,a->rowners+1,1,MPI_INT,comm); 8938965ea79SLois Curfman McInnes a->rowners[0] = 0; 8948965ea79SLois Curfman McInnes for ( i=2; i<=a->size; i++ ) { 8958965ea79SLois Curfman McInnes a->rowners[i] += a->rowners[i-1]; 8968965ea79SLois Curfman McInnes } 8978965ea79SLois Curfman McInnes a->rstart = a->rowners[a->rank]; 8988965ea79SLois Curfman McInnes a->rend = a->rowners[a->rank+1]; 899d7e8b826SBarry Smith MPI_Allgather(&n,1,MPI_INT,a->cowners+1,1,MPI_INT,comm); 900d7e8b826SBarry Smith a->cowners[0] = 0; 901d7e8b826SBarry Smith for ( i=2; i<=a->size; i++ ) { 902d7e8b826SBarry Smith a->cowners[i] += a->cowners[i-1]; 903d7e8b826SBarry Smith } 9048965ea79SLois Curfman McInnes 90518f449edSLois Curfman McInnes ierr = MatCreateSeqDense(MPI_COMM_SELF,m,N,data,&a->A); CHKERRQ(ierr); 9068965ea79SLois Curfman McInnes PLogObjectParent(mat,a->A); 9078965ea79SLois Curfman McInnes 9088965ea79SLois Curfman McInnes /* build cache for off array entries formed */ 9098965ea79SLois Curfman McInnes ierr = StashBuild_Private(&a->stash); CHKERRQ(ierr); 9108965ea79SLois Curfman McInnes 9118965ea79SLois Curfman McInnes /* stuff used for matrix vector multiply */ 9128965ea79SLois Curfman McInnes a->lvec = 0; 9138965ea79SLois Curfman McInnes a->Mvctx = 0; 91439b7565bSBarry Smith a->roworiented = 1; 9158965ea79SLois Curfman McInnes 916477f1c0bSLois Curfman McInnes *A = mat; 91725cdf11fSBarry Smith ierr = OptionsHasName(PETSC_NULL,"-help",&flg); CHKERRQ(ierr); 91825cdf11fSBarry Smith if (flg) { 9198c469469SLois Curfman McInnes ierr = MatPrintHelp(mat); CHKERRQ(ierr); 9208c469469SLois Curfman McInnes } 9218965ea79SLois Curfman McInnes return 0; 9228965ea79SLois Curfman McInnes } 9238965ea79SLois Curfman McInnes 9243d1612f7SBarry Smith static int MatConvertSameType_MPIDense(Mat A,Mat *newmat,int cpvalues) 9258965ea79SLois Curfman McInnes { 9268965ea79SLois Curfman McInnes Mat mat; 9273501a2bdSLois Curfman McInnes Mat_MPIDense *a,*oldmat = (Mat_MPIDense *) A->data; 92839ddd567SLois Curfman McInnes int ierr; 9292ba99913SLois Curfman McInnes FactorCtx *factor; 9308965ea79SLois Curfman McInnes 9318965ea79SLois Curfman McInnes *newmat = 0; 9320452661fSBarry Smith PetscHeaderCreate(mat,_Mat,MAT_COOKIE,MATMPIDENSE,A->comm); 9338965ea79SLois Curfman McInnes PLogObjectCreate(mat); 9340452661fSBarry Smith mat->data = (void *) (a = PetscNew(Mat_MPIDense)); CHKPTRQ(a); 9358965ea79SLois Curfman McInnes PetscMemcpy(&mat->ops,&MatOps,sizeof(struct _MatOps)); 93639ddd567SLois Curfman McInnes mat->destroy = MatDestroy_MPIDense; 93739ddd567SLois Curfman McInnes mat->view = MatView_MPIDense; 9383501a2bdSLois Curfman McInnes mat->factor = A->factor; 939c456f294SBarry Smith mat->assembled = PETSC_TRUE; 9408965ea79SLois Curfman McInnes 94144cd7ae7SLois Curfman McInnes a->m = mat->m = oldmat->m; 94244cd7ae7SLois Curfman McInnes a->n = mat->n = oldmat->n; 94344cd7ae7SLois Curfman McInnes a->M = mat->M = oldmat->M; 94444cd7ae7SLois Curfman McInnes a->N = mat->N = oldmat->N; 9452ba99913SLois Curfman McInnes if (oldmat->factor) { 9462ba99913SLois Curfman McInnes a->factor = (FactorCtx *) (factor = PetscNew(FactorCtx)); CHKPTRQ(factor); 9472ba99913SLois Curfman McInnes /* copy factor contents ... add this code! */ 9482ba99913SLois Curfman McInnes } else a->factor = 0; 9498965ea79SLois Curfman McInnes 9508965ea79SLois Curfman McInnes a->rstart = oldmat->rstart; 9518965ea79SLois Curfman McInnes a->rend = oldmat->rend; 9528965ea79SLois Curfman McInnes a->size = oldmat->size; 9538965ea79SLois Curfman McInnes a->rank = oldmat->rank; 9548965ea79SLois Curfman McInnes a->insertmode = NOT_SET_VALUES; 9558965ea79SLois Curfman McInnes 9560452661fSBarry Smith a->rowners = (int *) PetscMalloc((a->size+1)*sizeof(int)); CHKPTRQ(a->rowners); 95739ddd567SLois Curfman McInnes PLogObjectMemory(mat,(a->size+1)*sizeof(int)+sizeof(struct _Mat)+sizeof(Mat_MPIDense)); 9588965ea79SLois Curfman McInnes PetscMemcpy(a->rowners,oldmat->rowners,(a->size+1)*sizeof(int)); 9598965ea79SLois Curfman McInnes ierr = StashInitialize_Private(&a->stash); CHKERRQ(ierr); 9608965ea79SLois Curfman McInnes 9618965ea79SLois Curfman McInnes ierr = VecDuplicate(oldmat->lvec,&a->lvec); CHKERRQ(ierr); 9628965ea79SLois Curfman McInnes PLogObjectParent(mat,a->lvec); 96355659b69SBarry Smith ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx); CHKERRQ(ierr); 9648965ea79SLois Curfman McInnes PLogObjectParent(mat,a->Mvctx); 9658965ea79SLois Curfman McInnes ierr = MatConvert(oldmat->A,MATSAME,&a->A); CHKERRQ(ierr); 9668965ea79SLois Curfman McInnes PLogObjectParent(mat,a->A); 9678965ea79SLois Curfman McInnes *newmat = mat; 9688965ea79SLois Curfman McInnes return 0; 9698965ea79SLois Curfman McInnes } 9708965ea79SLois Curfman McInnes 97177c4ece6SBarry Smith #include "sys.h" 9728965ea79SLois Curfman McInnes 97390ace30eSBarry Smith int MatLoad_MPIDense_DenseInFile(MPI_Comm comm,int fd,int M, int N, Mat *newmat) 97490ace30eSBarry Smith { 97590ace30eSBarry Smith int *rowners, i,size,rank,m,rstart,rend,ierr,nz,j; 97690ace30eSBarry Smith Scalar *array,*vals,*vals_ptr; 97790ace30eSBarry Smith MPI_Status status; 97890ace30eSBarry Smith 97990ace30eSBarry Smith MPI_Comm_rank(comm,&rank); 98090ace30eSBarry Smith MPI_Comm_size(comm,&size); 98190ace30eSBarry Smith 98290ace30eSBarry Smith /* determine ownership of all rows */ 98390ace30eSBarry Smith m = M/size + ((M % size) > rank); 98490ace30eSBarry Smith rowners = (int *) PetscMalloc((size+2)*sizeof(int)); CHKPTRQ(rowners); 98590ace30eSBarry Smith MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm); 98690ace30eSBarry Smith rowners[0] = 0; 98790ace30eSBarry Smith for ( i=2; i<=size; i++ ) { 98890ace30eSBarry Smith rowners[i] += rowners[i-1]; 98990ace30eSBarry Smith } 99090ace30eSBarry Smith rstart = rowners[rank]; 99190ace30eSBarry Smith rend = rowners[rank+1]; 99290ace30eSBarry Smith 99390ace30eSBarry Smith ierr = MatCreateMPIDense(comm,m,PETSC_DECIDE,M,N,PETSC_NULL,newmat);CHKERRQ(ierr); 99490ace30eSBarry Smith ierr = MatGetArray(*newmat,&array); CHKERRQ(ierr); 99590ace30eSBarry Smith 99690ace30eSBarry Smith if (!rank) { 99790ace30eSBarry Smith vals = (Scalar *) PetscMalloc( m*N*sizeof(Scalar) ); CHKPTRQ(vals); 99890ace30eSBarry Smith 99990ace30eSBarry Smith /* read in my part of the matrix numerical values */ 100077c4ece6SBarry Smith ierr = PetscBinaryRead(fd,vals,m*N,BINARY_SCALAR); CHKERRQ(ierr); 100190ace30eSBarry Smith 100290ace30eSBarry Smith /* insert into matrix-by row (this is why cannot directly read into array */ 100390ace30eSBarry Smith vals_ptr = vals; 100490ace30eSBarry Smith for ( i=0; i<m; i++ ) { 100590ace30eSBarry Smith for ( j=0; j<N; j++ ) { 100690ace30eSBarry Smith array[i + j*m] = *vals_ptr++; 100790ace30eSBarry Smith } 100890ace30eSBarry Smith } 100990ace30eSBarry Smith 101090ace30eSBarry Smith /* read in other processors and ship out */ 101190ace30eSBarry Smith for ( i=1; i<size; i++ ) { 101290ace30eSBarry Smith nz = (rowners[i+1] - rowners[i])*N; 101377c4ece6SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,BINARY_SCALAR); CHKERRQ(ierr); 101490ace30eSBarry Smith MPI_Send(vals,nz,MPIU_SCALAR,i,(*newmat)->tag,comm); 101590ace30eSBarry Smith } 101690ace30eSBarry Smith } 101790ace30eSBarry Smith else { 101890ace30eSBarry Smith /* receive numeric values */ 101990ace30eSBarry Smith vals = (Scalar*) PetscMalloc( m*N*sizeof(Scalar) ); CHKPTRQ(vals); 102090ace30eSBarry Smith 102190ace30eSBarry Smith /* receive message of values*/ 102290ace30eSBarry Smith MPI_Recv(vals,m*N,MPIU_SCALAR,0,(*newmat)->tag,comm,&status); 102390ace30eSBarry Smith 102490ace30eSBarry Smith /* insert into matrix-by row (this is why cannot directly read into array */ 102590ace30eSBarry Smith vals_ptr = vals; 102690ace30eSBarry Smith for ( i=0; i<m; i++ ) { 102790ace30eSBarry Smith for ( j=0; j<N; j++ ) { 102890ace30eSBarry Smith array[i + j*m] = *vals_ptr++; 102990ace30eSBarry Smith } 103090ace30eSBarry Smith } 103190ace30eSBarry Smith } 103290ace30eSBarry Smith PetscFree(rowners); 103390ace30eSBarry Smith PetscFree(vals); 10346d4a8577SBarry Smith ierr = MatAssemblyBegin(*newmat,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 10356d4a8577SBarry Smith ierr = MatAssemblyEnd(*newmat,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 103690ace30eSBarry Smith return 0; 103790ace30eSBarry Smith } 103890ace30eSBarry Smith 103990ace30eSBarry Smith 104019bcc07fSBarry Smith int MatLoad_MPIDense(Viewer viewer,MatType type,Mat *newmat) 10418965ea79SLois Curfman McInnes { 10428965ea79SLois Curfman McInnes Mat A; 10438965ea79SLois Curfman McInnes int i, nz, ierr, j,rstart, rend, fd; 10448965ea79SLois Curfman McInnes Scalar *vals,*svals; 104519bcc07fSBarry Smith MPI_Comm comm = ((PetscObject)viewer)->comm; 10468965ea79SLois Curfman McInnes MPI_Status status; 10478965ea79SLois Curfman McInnes int header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,maxnz,*cols; 10488965ea79SLois Curfman McInnes int *ourlens,*sndcounts = 0,*procsnz = 0, *offlens,jj,*mycols,*smycols; 104919bcc07fSBarry Smith int tag = ((PetscObject)viewer)->tag; 10508965ea79SLois Curfman McInnes 10518965ea79SLois Curfman McInnes MPI_Comm_size(comm,&size); MPI_Comm_rank(comm,&rank); 10528965ea79SLois Curfman McInnes if (!rank) { 105390ace30eSBarry Smith ierr = ViewerBinaryGetDescriptor(viewer,&fd); CHKERRQ(ierr); 105477c4ece6SBarry Smith ierr = PetscBinaryRead(fd,(char *)header,4,BINARY_INT); CHKERRQ(ierr); 105539ddd567SLois Curfman McInnes if (header[0] != MAT_COOKIE) SETERRQ(1,"MatLoad_MPIDenseorMPIRow:not matrix object"); 10568965ea79SLois Curfman McInnes } 10578965ea79SLois Curfman McInnes 10588965ea79SLois Curfman McInnes MPI_Bcast(header+1,3,MPI_INT,0,comm); 105990ace30eSBarry Smith M = header[1]; N = header[2]; nz = header[3]; 106090ace30eSBarry Smith 106190ace30eSBarry Smith /* 106290ace30eSBarry Smith Handle case where matrix is stored on disk as a dense matrix 106390ace30eSBarry Smith */ 106490ace30eSBarry Smith if (nz == MATRIX_BINARY_FORMAT_DENSE) { 106590ace30eSBarry Smith return MatLoad_MPIDense_DenseInFile(comm,fd,M,N,newmat); 106690ace30eSBarry Smith } 106790ace30eSBarry Smith 10688965ea79SLois Curfman McInnes /* determine ownership of all rows */ 10698965ea79SLois Curfman McInnes m = M/size + ((M % size) > rank); 10700452661fSBarry Smith rowners = (int *) PetscMalloc((size+2)*sizeof(int)); CHKPTRQ(rowners); 10718965ea79SLois Curfman McInnes MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm); 10728965ea79SLois Curfman McInnes rowners[0] = 0; 10738965ea79SLois Curfman McInnes for ( i=2; i<=size; i++ ) { 10748965ea79SLois Curfman McInnes rowners[i] += rowners[i-1]; 10758965ea79SLois Curfman McInnes } 10768965ea79SLois Curfman McInnes rstart = rowners[rank]; 10778965ea79SLois Curfman McInnes rend = rowners[rank+1]; 10788965ea79SLois Curfman McInnes 10798965ea79SLois Curfman McInnes /* distribute row lengths to all processors */ 10800452661fSBarry Smith ourlens = (int*) PetscMalloc( 2*(rend-rstart)*sizeof(int) ); CHKPTRQ(ourlens); 10818965ea79SLois Curfman McInnes offlens = ourlens + (rend-rstart); 10828965ea79SLois Curfman McInnes if (!rank) { 10830452661fSBarry Smith rowlengths = (int*) PetscMalloc( M*sizeof(int) ); CHKPTRQ(rowlengths); 108477c4ece6SBarry Smith ierr = PetscBinaryRead(fd,rowlengths,M,BINARY_INT); CHKERRQ(ierr); 10850452661fSBarry Smith sndcounts = (int*) PetscMalloc( size*sizeof(int) ); CHKPTRQ(sndcounts); 10868965ea79SLois Curfman McInnes for ( i=0; i<size; i++ ) sndcounts[i] = rowners[i+1] - rowners[i]; 10878965ea79SLois Curfman McInnes MPI_Scatterv(rowlengths,sndcounts,rowners,MPI_INT,ourlens,rend-rstart,MPI_INT,0,comm); 10880452661fSBarry Smith PetscFree(sndcounts); 10898965ea79SLois Curfman McInnes } 10908965ea79SLois Curfman McInnes else { 10918965ea79SLois Curfman McInnes MPI_Scatterv(0,0,0,MPI_INT,ourlens,rend-rstart,MPI_INT, 0,comm); 10928965ea79SLois Curfman McInnes } 10938965ea79SLois Curfman McInnes 10948965ea79SLois Curfman McInnes if (!rank) { 10958965ea79SLois Curfman McInnes /* calculate the number of nonzeros on each processor */ 10960452661fSBarry Smith procsnz = (int*) PetscMalloc( size*sizeof(int) ); CHKPTRQ(procsnz); 1097cddf8d76SBarry Smith PetscMemzero(procsnz,size*sizeof(int)); 10988965ea79SLois Curfman McInnes for ( i=0; i<size; i++ ) { 10998965ea79SLois Curfman McInnes for ( j=rowners[i]; j< rowners[i+1]; j++ ) { 11008965ea79SLois Curfman McInnes procsnz[i] += rowlengths[j]; 11018965ea79SLois Curfman McInnes } 11028965ea79SLois Curfman McInnes } 11030452661fSBarry Smith PetscFree(rowlengths); 11048965ea79SLois Curfman McInnes 11058965ea79SLois Curfman McInnes /* determine max buffer needed and allocate it */ 11068965ea79SLois Curfman McInnes maxnz = 0; 11078965ea79SLois Curfman McInnes for ( i=0; i<size; i++ ) { 11080452661fSBarry Smith maxnz = PetscMax(maxnz,procsnz[i]); 11098965ea79SLois Curfman McInnes } 11100452661fSBarry Smith cols = (int *) PetscMalloc( maxnz*sizeof(int) ); CHKPTRQ(cols); 11118965ea79SLois Curfman McInnes 11128965ea79SLois Curfman McInnes /* read in my part of the matrix column indices */ 11138965ea79SLois Curfman McInnes nz = procsnz[0]; 11140452661fSBarry Smith mycols = (int *) PetscMalloc( nz*sizeof(int) ); CHKPTRQ(mycols); 111577c4ece6SBarry Smith ierr = PetscBinaryRead(fd,mycols,nz,BINARY_INT); CHKERRQ(ierr); 11168965ea79SLois Curfman McInnes 11178965ea79SLois Curfman McInnes /* read in every one elses and ship off */ 11188965ea79SLois Curfman McInnes for ( i=1; i<size; i++ ) { 11198965ea79SLois Curfman McInnes nz = procsnz[i]; 112077c4ece6SBarry Smith ierr = PetscBinaryRead(fd,cols,nz,BINARY_INT); CHKERRQ(ierr); 11218965ea79SLois Curfman McInnes MPI_Send(cols,nz,MPI_INT,i,tag,comm); 11228965ea79SLois Curfman McInnes } 11230452661fSBarry Smith PetscFree(cols); 11248965ea79SLois Curfman McInnes } 11258965ea79SLois Curfman McInnes else { 11268965ea79SLois Curfman McInnes /* determine buffer space needed for message */ 11278965ea79SLois Curfman McInnes nz = 0; 11288965ea79SLois Curfman McInnes for ( i=0; i<m; i++ ) { 11298965ea79SLois Curfman McInnes nz += ourlens[i]; 11308965ea79SLois Curfman McInnes } 11310452661fSBarry Smith mycols = (int*) PetscMalloc( nz*sizeof(int) ); CHKPTRQ(mycols); 11328965ea79SLois Curfman McInnes 11338965ea79SLois Curfman McInnes /* receive message of column indices*/ 11348965ea79SLois Curfman McInnes MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status); 11358965ea79SLois Curfman McInnes MPI_Get_count(&status,MPI_INT,&maxnz); 113639ddd567SLois Curfman McInnes if (maxnz != nz) SETERRQ(1,"MatLoad_MPIDenseorMPIRow:something is wrong with file"); 11378965ea79SLois Curfman McInnes } 11388965ea79SLois Curfman McInnes 11398965ea79SLois Curfman McInnes /* loop over local rows, determining number of off diagonal entries */ 1140cddf8d76SBarry Smith PetscMemzero(offlens,m*sizeof(int)); 11418965ea79SLois Curfman McInnes jj = 0; 11428965ea79SLois Curfman McInnes for ( i=0; i<m; i++ ) { 11438965ea79SLois Curfman McInnes for ( j=0; j<ourlens[i]; j++ ) { 11448965ea79SLois Curfman McInnes if (mycols[jj] < rstart || mycols[jj] >= rend) offlens[i]++; 11458965ea79SLois Curfman McInnes jj++; 11468965ea79SLois Curfman McInnes } 11478965ea79SLois Curfman McInnes } 11488965ea79SLois Curfman McInnes 11498965ea79SLois Curfman McInnes /* create our matrix */ 11508965ea79SLois Curfman McInnes for ( i=0; i<m; i++ ) { 11518965ea79SLois Curfman McInnes ourlens[i] -= offlens[i]; 11528965ea79SLois Curfman McInnes } 1153b4fd4287SBarry Smith ierr = MatCreateMPIDense(comm,m,PETSC_DECIDE,M,N,PETSC_NULL,newmat);CHKERRQ(ierr); 11548965ea79SLois Curfman McInnes A = *newmat; 11558965ea79SLois Curfman McInnes for ( i=0; i<m; i++ ) { 11568965ea79SLois Curfman McInnes ourlens[i] += offlens[i]; 11578965ea79SLois Curfman McInnes } 11588965ea79SLois Curfman McInnes 11598965ea79SLois Curfman McInnes if (!rank) { 11600452661fSBarry Smith vals = (Scalar *) PetscMalloc( maxnz*sizeof(Scalar) ); CHKPTRQ(vals); 11618965ea79SLois Curfman McInnes 11628965ea79SLois Curfman McInnes /* read in my part of the matrix numerical values */ 11638965ea79SLois Curfman McInnes nz = procsnz[0]; 116477c4ece6SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,BINARY_SCALAR); CHKERRQ(ierr); 11658965ea79SLois Curfman McInnes 11668965ea79SLois Curfman McInnes /* insert into matrix */ 11678965ea79SLois Curfman McInnes jj = rstart; 11688965ea79SLois Curfman McInnes smycols = mycols; 11698965ea79SLois Curfman McInnes svals = vals; 11708965ea79SLois Curfman McInnes for ( i=0; i<m; i++ ) { 11718965ea79SLois Curfman McInnes ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 11728965ea79SLois Curfman McInnes smycols += ourlens[i]; 11738965ea79SLois Curfman McInnes svals += ourlens[i]; 11748965ea79SLois Curfman McInnes jj++; 11758965ea79SLois Curfman McInnes } 11768965ea79SLois Curfman McInnes 11778965ea79SLois Curfman McInnes /* read in other processors and ship out */ 11788965ea79SLois Curfman McInnes for ( i=1; i<size; i++ ) { 11798965ea79SLois Curfman McInnes nz = procsnz[i]; 118077c4ece6SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,BINARY_SCALAR); CHKERRQ(ierr); 11818965ea79SLois Curfman McInnes MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm); 11828965ea79SLois Curfman McInnes } 11830452661fSBarry Smith PetscFree(procsnz); 11848965ea79SLois Curfman McInnes } 11858965ea79SLois Curfman McInnes else { 11868965ea79SLois Curfman McInnes /* receive numeric values */ 11870452661fSBarry Smith vals = (Scalar*) PetscMalloc( nz*sizeof(Scalar) ); CHKPTRQ(vals); 11888965ea79SLois Curfman McInnes 11898965ea79SLois Curfman McInnes /* receive message of values*/ 11908965ea79SLois Curfman McInnes MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status); 11918965ea79SLois Curfman McInnes MPI_Get_count(&status,MPIU_SCALAR,&maxnz); 119239ddd567SLois Curfman McInnes if (maxnz != nz) SETERRQ(1,"MatLoad_MPIDenseorMPIRow:something is wrong with file"); 11938965ea79SLois Curfman McInnes 11948965ea79SLois Curfman McInnes /* insert into matrix */ 11958965ea79SLois Curfman McInnes jj = rstart; 11968965ea79SLois Curfman McInnes smycols = mycols; 11978965ea79SLois Curfman McInnes svals = vals; 11988965ea79SLois Curfman McInnes for ( i=0; i<m; i++ ) { 11998965ea79SLois Curfman McInnes ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 12008965ea79SLois Curfman McInnes smycols += ourlens[i]; 12018965ea79SLois Curfman McInnes svals += ourlens[i]; 12028965ea79SLois Curfman McInnes jj++; 12038965ea79SLois Curfman McInnes } 12048965ea79SLois Curfman McInnes } 12050452661fSBarry Smith PetscFree(ourlens); PetscFree(vals); PetscFree(mycols); PetscFree(rowners); 12068965ea79SLois Curfman McInnes 12076d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 12086d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 12098965ea79SLois Curfman McInnes return 0; 12108965ea79SLois Curfman McInnes } 121190ace30eSBarry Smith 121290ace30eSBarry Smith 121390ace30eSBarry Smith 121490ace30eSBarry Smith 121590ace30eSBarry Smith 1216