1be1d678aSKris Buschelman 2ed3cc1f0SBarry Smith /* 3ed3cc1f0SBarry Smith Basic functions for basic parallel dense matrices. 4ed3cc1f0SBarry Smith */ 5ed3cc1f0SBarry Smith 6c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h> /*I "petscmat.h" I*/ 78949adfdSHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 8baa3c1c6SHong Zhang #include <petscblaslapack.h> 98965ea79SLois Curfman McInnes 10ab92ecdeSBarry Smith /*@ 11ab92ecdeSBarry Smith 12ab92ecdeSBarry Smith MatDenseGetLocalMatrix - For a MATMPIDENSE or MATSEQDENSE matrix returns the sequential 13ab92ecdeSBarry Smith matrix that represents the operator. For sequential matrices it returns itself. 14ab92ecdeSBarry Smith 15ab92ecdeSBarry Smith Input Parameter: 16ab92ecdeSBarry Smith . A - the Seq or MPI dense matrix 17ab92ecdeSBarry Smith 18ab92ecdeSBarry Smith Output Parameter: 19ab92ecdeSBarry Smith . B - the inner matrix 20ab92ecdeSBarry Smith 218e6c10adSSatish Balay Level: intermediate 228e6c10adSSatish Balay 23ab92ecdeSBarry Smith @*/ 24ab92ecdeSBarry Smith PetscErrorCode MatDenseGetLocalMatrix(Mat A,Mat *B) 25ab92ecdeSBarry Smith { 26ab92ecdeSBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 27ab92ecdeSBarry Smith PetscErrorCode ierr; 28ace3abfcSBarry Smith PetscBool flg; 29ab92ecdeSBarry Smith 30ab92ecdeSBarry Smith PetscFunctionBegin; 31d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 32d5ea218eSStefano Zampini PetscValidPointer(B,2); 33251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIDENSE,&flg);CHKERRQ(ierr); 342205254eSKarl Rupp if (flg) *B = mat->A; 352205254eSKarl Rupp else *B = A; 36ab92ecdeSBarry Smith PetscFunctionReturn(0); 37ab92ecdeSBarry Smith } 38ab92ecdeSBarry Smith 39ba8c8a56SBarry Smith PetscErrorCode MatGetRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 40ba8c8a56SBarry Smith { 41ba8c8a56SBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 42ba8c8a56SBarry Smith PetscErrorCode ierr; 43d0f46423SBarry Smith PetscInt lrow,rstart = A->rmap->rstart,rend = A->rmap->rend; 44ba8c8a56SBarry Smith 45ba8c8a56SBarry Smith PetscFunctionBegin; 46e7e72b3dSBarry Smith if (row < rstart || row >= rend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows"); 47ba8c8a56SBarry Smith lrow = row - rstart; 48ba8c8a56SBarry Smith ierr = MatGetRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v);CHKERRQ(ierr); 49ba8c8a56SBarry Smith PetscFunctionReturn(0); 50ba8c8a56SBarry Smith } 51ba8c8a56SBarry Smith 52637a0070SStefano Zampini PetscErrorCode MatRestoreRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 53ba8c8a56SBarry Smith { 54637a0070SStefano Zampini Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 55ba8c8a56SBarry Smith PetscErrorCode ierr; 56637a0070SStefano Zampini PetscInt lrow,rstart = A->rmap->rstart,rend = A->rmap->rend; 57ba8c8a56SBarry Smith 58ba8c8a56SBarry Smith PetscFunctionBegin; 59637a0070SStefano Zampini if (row < rstart || row >= rend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows"); 60637a0070SStefano Zampini lrow = row - rstart; 61637a0070SStefano Zampini ierr = MatRestoreRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v);CHKERRQ(ierr); 62ba8c8a56SBarry Smith PetscFunctionReturn(0); 63ba8c8a56SBarry Smith } 64ba8c8a56SBarry Smith 6511bd1e4dSLisandro Dalcin PetscErrorCode MatGetDiagonalBlock_MPIDense(Mat A,Mat *a) 660de54da6SSatish Balay { 670de54da6SSatish Balay Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 686849ba73SBarry Smith PetscErrorCode ierr; 69d0f46423SBarry Smith PetscInt m = A->rmap->n,rstart = A->rmap->rstart; 7087828ca2SBarry Smith PetscScalar *array; 710de54da6SSatish Balay MPI_Comm comm; 72637a0070SStefano Zampini PetscBool cong; 7311bd1e4dSLisandro Dalcin Mat B; 740de54da6SSatish Balay 750de54da6SSatish Balay PetscFunctionBegin; 76637a0070SStefano Zampini ierr = MatHasCongruentLayouts(A,&cong);CHKERRQ(ierr); 77637a0070SStefano Zampini if (!cong) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only square matrices supported."); 7811bd1e4dSLisandro Dalcin ierr = PetscObjectQuery((PetscObject)A,"DiagonalBlock",(PetscObject*)&B);CHKERRQ(ierr); 7911bd1e4dSLisandro Dalcin if (!B) { 800de54da6SSatish Balay ierr = PetscObjectGetComm((PetscObject)(mdn->A),&comm);CHKERRQ(ierr); 8111bd1e4dSLisandro Dalcin ierr = MatCreate(comm,&B);CHKERRQ(ierr); 8211bd1e4dSLisandro Dalcin ierr = MatSetSizes(B,m,m,m,m);CHKERRQ(ierr); 8311bd1e4dSLisandro Dalcin ierr = MatSetType(B,((PetscObject)mdn->A)->type_name);CHKERRQ(ierr); 848c778c55SBarry Smith ierr = MatDenseGetArray(mdn->A,&array);CHKERRQ(ierr); 8511bd1e4dSLisandro Dalcin ierr = MatSeqDenseSetPreallocation(B,array+m*rstart);CHKERRQ(ierr); 868c778c55SBarry Smith ierr = MatDenseRestoreArray(mdn->A,&array);CHKERRQ(ierr); 8711bd1e4dSLisandro Dalcin ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 8811bd1e4dSLisandro Dalcin ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 8911bd1e4dSLisandro Dalcin ierr = PetscObjectCompose((PetscObject)A,"DiagonalBlock",(PetscObject)B);CHKERRQ(ierr); 9011bd1e4dSLisandro Dalcin *a = B; 9111bd1e4dSLisandro Dalcin ierr = MatDestroy(&B);CHKERRQ(ierr); 922205254eSKarl Rupp } else *a = B; 930de54da6SSatish Balay PetscFunctionReturn(0); 940de54da6SSatish Balay } 950de54da6SSatish Balay 9613f74950SBarry Smith PetscErrorCode MatSetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],const PetscScalar v[],InsertMode addv) 978965ea79SLois Curfman McInnes { 9839b7565bSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)mat->data; 99dfbe8321SBarry Smith PetscErrorCode ierr; 100d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 101ace3abfcSBarry Smith PetscBool roworiented = A->roworiented; 1028965ea79SLois Curfman McInnes 1033a40ed3dSBarry Smith PetscFunctionBegin; 1048965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 1055ef9f2a5SBarry Smith if (idxm[i] < 0) continue; 106e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 1078965ea79SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 1088965ea79SLois Curfman McInnes row = idxm[i] - rstart; 10939b7565bSBarry Smith if (roworiented) { 11039b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv);CHKERRQ(ierr); 1113a40ed3dSBarry Smith } else { 1128965ea79SLois Curfman McInnes for (j=0; j<n; j++) { 1135ef9f2a5SBarry Smith if (idxn[j] < 0) continue; 114e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 11539b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv);CHKERRQ(ierr); 11639b7565bSBarry Smith } 1178965ea79SLois Curfman McInnes } 1182205254eSKarl Rupp } else if (!A->donotstash) { 1195080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 12039b7565bSBarry Smith if (roworiented) { 121b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,idxm[i],n,idxn,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 122d36fbae8SSatish Balay } else { 123b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,idxm[i],n,idxn,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 12439b7565bSBarry Smith } 125b49de8d1SLois Curfman McInnes } 126b49de8d1SLois Curfman McInnes } 1273a40ed3dSBarry Smith PetscFunctionReturn(0); 128b49de8d1SLois Curfman McInnes } 129b49de8d1SLois Curfman McInnes 13013f74950SBarry Smith PetscErrorCode MatGetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 131b49de8d1SLois Curfman McInnes { 132b49de8d1SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 133dfbe8321SBarry Smith PetscErrorCode ierr; 134d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 135b49de8d1SLois Curfman McInnes 1363a40ed3dSBarry Smith PetscFunctionBegin; 137b49de8d1SLois Curfman McInnes for (i=0; i<m; i++) { 138e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); */ 139e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 140b49de8d1SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 141b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 142b49de8d1SLois Curfman McInnes for (j=0; j<n; j++) { 143e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); */ 144e7e72b3dSBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 145b49de8d1SLois Curfman McInnes ierr = MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j);CHKERRQ(ierr); 146b49de8d1SLois Curfman McInnes } 147e7e72b3dSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 1488965ea79SLois Curfman McInnes } 1493a40ed3dSBarry Smith PetscFunctionReturn(0); 1508965ea79SLois Curfman McInnes } 1518965ea79SLois Curfman McInnes 15249a6ff4bSBarry Smith static PetscErrorCode MatDenseGetLDA_MPIDense(Mat A,PetscInt *lda) 15349a6ff4bSBarry Smith { 15449a6ff4bSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 15549a6ff4bSBarry Smith PetscErrorCode ierr; 15649a6ff4bSBarry Smith 15749a6ff4bSBarry Smith PetscFunctionBegin; 15849a6ff4bSBarry Smith ierr = MatDenseGetLDA(a->A,lda);CHKERRQ(ierr); 15949a6ff4bSBarry Smith PetscFunctionReturn(0); 16049a6ff4bSBarry Smith } 16149a6ff4bSBarry Smith 162637a0070SStefano Zampini static PetscErrorCode MatDenseGetArray_MPIDense(Mat A,PetscScalar **array) 163ff14e315SSatish Balay { 164ff14e315SSatish Balay Mat_MPIDense *a = (Mat_MPIDense*)A->data; 165dfbe8321SBarry Smith PetscErrorCode ierr; 166ff14e315SSatish Balay 1673a40ed3dSBarry Smith PetscFunctionBegin; 1688c778c55SBarry Smith ierr = MatDenseGetArray(a->A,array);CHKERRQ(ierr); 1693a40ed3dSBarry Smith PetscFunctionReturn(0); 170ff14e315SSatish Balay } 171ff14e315SSatish Balay 172637a0070SStefano Zampini static PetscErrorCode MatDenseGetArrayRead_MPIDense(Mat A,const PetscScalar **array) 1738572280aSBarry Smith { 1748572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1758572280aSBarry Smith PetscErrorCode ierr; 1768572280aSBarry Smith 1778572280aSBarry Smith PetscFunctionBegin; 1788572280aSBarry Smith ierr = MatDenseGetArrayRead(a->A,array);CHKERRQ(ierr); 1798572280aSBarry Smith PetscFunctionReturn(0); 1808572280aSBarry Smith } 1818572280aSBarry Smith 1826947451fSStefano Zampini static PetscErrorCode MatDenseGetArrayWrite_MPIDense(Mat A,PetscScalar **array) 1836947451fSStefano Zampini { 1846947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1856947451fSStefano Zampini PetscErrorCode ierr; 1866947451fSStefano Zampini 1876947451fSStefano Zampini PetscFunctionBegin; 1886947451fSStefano Zampini ierr = MatDenseGetArrayWrite(a->A,array);CHKERRQ(ierr); 1896947451fSStefano Zampini PetscFunctionReturn(0); 1906947451fSStefano Zampini } 1916947451fSStefano Zampini 192637a0070SStefano Zampini static PetscErrorCode MatDensePlaceArray_MPIDense(Mat A,const PetscScalar *array) 193d3042a70SBarry Smith { 194d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 195d3042a70SBarry Smith PetscErrorCode ierr; 196d3042a70SBarry Smith 197d3042a70SBarry Smith PetscFunctionBegin; 1986947451fSStefano Zampini if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first"); 199d3042a70SBarry Smith ierr = MatDensePlaceArray(a->A,array);CHKERRQ(ierr); 200d3042a70SBarry Smith PetscFunctionReturn(0); 201d3042a70SBarry Smith } 202d3042a70SBarry Smith 203d3042a70SBarry Smith static PetscErrorCode MatDenseResetArray_MPIDense(Mat A) 204d3042a70SBarry Smith { 205d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 206d3042a70SBarry Smith PetscErrorCode ierr; 207d3042a70SBarry Smith 208d3042a70SBarry Smith PetscFunctionBegin; 2096947451fSStefano Zampini if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first"); 210d3042a70SBarry Smith ierr = MatDenseResetArray(a->A);CHKERRQ(ierr); 211d3042a70SBarry Smith PetscFunctionReturn(0); 212d3042a70SBarry Smith } 213d3042a70SBarry Smith 214d5ea218eSStefano Zampini static PetscErrorCode MatDenseReplaceArray_MPIDense(Mat A,const PetscScalar *array) 215d5ea218eSStefano Zampini { 216d5ea218eSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 217d5ea218eSStefano Zampini PetscErrorCode ierr; 218d5ea218eSStefano Zampini 219d5ea218eSStefano Zampini PetscFunctionBegin; 220d5ea218eSStefano Zampini if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first"); 221d5ea218eSStefano Zampini ierr = MatDenseReplaceArray(a->A,array);CHKERRQ(ierr); 222d5ea218eSStefano Zampini PetscFunctionReturn(0); 223d5ea218eSStefano Zampini } 224d5ea218eSStefano Zampini 2257dae84e0SHong Zhang static PetscErrorCode MatCreateSubMatrix_MPIDense(Mat A,IS isrow,IS iscol,MatReuse scall,Mat *B) 226ca3fa75bSLois Curfman McInnes { 227ca3fa75bSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data,*newmatd; 2286849ba73SBarry Smith PetscErrorCode ierr; 229637a0070SStefano Zampini PetscInt lda,i,j,rstart,rend,nrows,ncols,Ncols,nlrows,nlcols; 2305d0c19d7SBarry Smith const PetscInt *irow,*icol; 231637a0070SStefano Zampini const PetscScalar *v; 232637a0070SStefano Zampini PetscScalar *bv; 233ca3fa75bSLois Curfman McInnes Mat newmat; 2344aa3045dSJed Brown IS iscol_local; 23542a884f0SBarry Smith MPI_Comm comm_is,comm_mat; 236ca3fa75bSLois Curfman McInnes 237ca3fa75bSLois Curfman McInnes PetscFunctionBegin; 23842a884f0SBarry Smith ierr = PetscObjectGetComm((PetscObject)A,&comm_mat);CHKERRQ(ierr); 23942a884f0SBarry Smith ierr = PetscObjectGetComm((PetscObject)iscol,&comm_is);CHKERRQ(ierr); 24042a884f0SBarry Smith if (comm_mat != comm_is) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NOTSAMECOMM,"IS communicator must match matrix communicator"); 24142a884f0SBarry Smith 2424aa3045dSJed Brown ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 243ca3fa75bSLois Curfman McInnes ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr); 2444aa3045dSJed Brown ierr = ISGetIndices(iscol_local,&icol);CHKERRQ(ierr); 245b9b97703SBarry Smith ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr); 246b9b97703SBarry Smith ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr); 2474aa3045dSJed Brown ierr = ISGetSize(iscol,&Ncols);CHKERRQ(ierr); /* global number of columns, size of iscol_local */ 248ca3fa75bSLois Curfman McInnes 249ca3fa75bSLois Curfman McInnes /* No parallel redistribution currently supported! Should really check each index set 2507eba5e9cSLois Curfman McInnes to comfirm that it is OK. ... Currently supports only submatrix same partitioning as 2517eba5e9cSLois Curfman McInnes original matrix! */ 252ca3fa75bSLois Curfman McInnes 253ca3fa75bSLois Curfman McInnes ierr = MatGetLocalSize(A,&nlrows,&nlcols);CHKERRQ(ierr); 2547eba5e9cSLois Curfman McInnes ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr); 255ca3fa75bSLois Curfman McInnes 256ca3fa75bSLois Curfman McInnes /* Check submatrix call */ 257ca3fa75bSLois Curfman McInnes if (scall == MAT_REUSE_MATRIX) { 258e32f2f54SBarry Smith /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */ 2597eba5e9cSLois Curfman McInnes /* Really need to test rows and column sizes! */ 260ca3fa75bSLois Curfman McInnes newmat = *B; 261ca3fa75bSLois Curfman McInnes } else { 262ca3fa75bSLois Curfman McInnes /* Create and fill new matrix */ 263ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&newmat);CHKERRQ(ierr); 2644aa3045dSJed Brown ierr = MatSetSizes(newmat,nrows,ncols,PETSC_DECIDE,Ncols);CHKERRQ(ierr); 2657adad957SLisandro Dalcin ierr = MatSetType(newmat,((PetscObject)A)->type_name);CHKERRQ(ierr); 2660298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr); 267ca3fa75bSLois Curfman McInnes } 268ca3fa75bSLois Curfman McInnes 269ca3fa75bSLois Curfman McInnes /* Now extract the data pointers and do the copy, column at a time */ 270ca3fa75bSLois Curfman McInnes newmatd = (Mat_MPIDense*)newmat->data; 271637a0070SStefano Zampini ierr = MatDenseGetArray(newmatd->A,&bv);CHKERRQ(ierr); 272637a0070SStefano Zampini ierr = MatDenseGetArrayRead(mat->A,&v);CHKERRQ(ierr); 273637a0070SStefano Zampini ierr = MatDenseGetLDA(mat->A,&lda);CHKERRQ(ierr); 2744aa3045dSJed Brown for (i=0; i<Ncols; i++) { 275637a0070SStefano Zampini const PetscScalar *av = v + lda*icol[i]; 276ca3fa75bSLois Curfman McInnes for (j=0; j<nrows; j++) { 2777eba5e9cSLois Curfman McInnes *bv++ = av[irow[j] - rstart]; 278ca3fa75bSLois Curfman McInnes } 279ca3fa75bSLois Curfman McInnes } 280637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(mat->A,&v);CHKERRQ(ierr); 281637a0070SStefano Zampini ierr = MatDenseRestoreArray(newmatd->A,&bv);CHKERRQ(ierr); 282ca3fa75bSLois Curfman McInnes 283ca3fa75bSLois Curfman McInnes /* Assemble the matrices so that the correct flags are set */ 284ca3fa75bSLois Curfman McInnes ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 285ca3fa75bSLois Curfman McInnes ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 286ca3fa75bSLois Curfman McInnes 287ca3fa75bSLois Curfman McInnes /* Free work space */ 288ca3fa75bSLois Curfman McInnes ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr); 2895bdf786aSShri Abhyankar ierr = ISRestoreIndices(iscol_local,&icol);CHKERRQ(ierr); 29032bb1f2dSLisandro Dalcin ierr = ISDestroy(&iscol_local);CHKERRQ(ierr); 291ca3fa75bSLois Curfman McInnes *B = newmat; 292ca3fa75bSLois Curfman McInnes PetscFunctionReturn(0); 293ca3fa75bSLois Curfman McInnes } 294ca3fa75bSLois Curfman McInnes 295637a0070SStefano Zampini PetscErrorCode MatDenseRestoreArray_MPIDense(Mat A,PetscScalar **array) 296ff14e315SSatish Balay { 29773a71a0fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 29873a71a0fSBarry Smith PetscErrorCode ierr; 29973a71a0fSBarry Smith 3003a40ed3dSBarry Smith PetscFunctionBegin; 3018c778c55SBarry Smith ierr = MatDenseRestoreArray(a->A,array);CHKERRQ(ierr); 3023a40ed3dSBarry Smith PetscFunctionReturn(0); 303ff14e315SSatish Balay } 304ff14e315SSatish Balay 305637a0070SStefano Zampini PetscErrorCode MatDenseRestoreArrayRead_MPIDense(Mat A,const PetscScalar **array) 3068572280aSBarry Smith { 3078572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 3088572280aSBarry Smith PetscErrorCode ierr; 3098572280aSBarry Smith 3108572280aSBarry Smith PetscFunctionBegin; 3118572280aSBarry Smith ierr = MatDenseRestoreArrayRead(a->A,array);CHKERRQ(ierr); 3128572280aSBarry Smith PetscFunctionReturn(0); 3138572280aSBarry Smith } 3148572280aSBarry Smith 3156947451fSStefano Zampini PetscErrorCode MatDenseRestoreArrayWrite_MPIDense(Mat A,PetscScalar **array) 3166947451fSStefano Zampini { 3176947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 3186947451fSStefano Zampini PetscErrorCode ierr; 3196947451fSStefano Zampini 3206947451fSStefano Zampini PetscFunctionBegin; 3216947451fSStefano Zampini ierr = MatDenseRestoreArrayWrite(a->A,array);CHKERRQ(ierr); 3226947451fSStefano Zampini PetscFunctionReturn(0); 3236947451fSStefano Zampini } 3246947451fSStefano Zampini 325dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode) 3268965ea79SLois Curfman McInnes { 32739ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 328dfbe8321SBarry Smith PetscErrorCode ierr; 32913f74950SBarry Smith PetscInt nstash,reallocs; 3308965ea79SLois Curfman McInnes 3313a40ed3dSBarry Smith PetscFunctionBegin; 332910cf402Sprj- if (mdn->donotstash || mat->nooffprocentries) return(0); 3338965ea79SLois Curfman McInnes 334d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 3358798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 336ae15b995SBarry Smith ierr = PetscInfo2(mdn->A,"Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 3373a40ed3dSBarry Smith PetscFunctionReturn(0); 3388965ea79SLois Curfman McInnes } 3398965ea79SLois Curfman McInnes 340dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode) 3418965ea79SLois Curfman McInnes { 34239ddd567SLois Curfman McInnes Mat_MPIDense *mdn=(Mat_MPIDense*)mat->data; 3436849ba73SBarry Smith PetscErrorCode ierr; 34413f74950SBarry Smith PetscInt i,*row,*col,flg,j,rstart,ncols; 34513f74950SBarry Smith PetscMPIInt n; 34687828ca2SBarry Smith PetscScalar *val; 3478965ea79SLois Curfman McInnes 3483a40ed3dSBarry Smith PetscFunctionBegin; 349910cf402Sprj- if (!mdn->donotstash && !mat->nooffprocentries) { 3508965ea79SLois Curfman McInnes /* wait on receives */ 3517ef1d9bdSSatish Balay while (1) { 3528798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 3537ef1d9bdSSatish Balay if (!flg) break; 3548965ea79SLois Curfman McInnes 3557ef1d9bdSSatish Balay for (i=0; i<n;) { 3567ef1d9bdSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 3572205254eSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 3582205254eSKarl Rupp if (row[j] != rstart) break; 3592205254eSKarl Rupp } 3607ef1d9bdSSatish Balay if (j < n) ncols = j-i; 3617ef1d9bdSSatish Balay else ncols = n-i; 3627ef1d9bdSSatish Balay /* Now assemble all these values with a single function call */ 3634b4eb8d3SJed Brown ierr = MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr); 3647ef1d9bdSSatish Balay i = j; 3658965ea79SLois Curfman McInnes } 3667ef1d9bdSSatish Balay } 3678798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 368910cf402Sprj- } 3698965ea79SLois Curfman McInnes 37039ddd567SLois Curfman McInnes ierr = MatAssemblyBegin(mdn->A,mode);CHKERRQ(ierr); 37139ddd567SLois Curfman McInnes ierr = MatAssemblyEnd(mdn->A,mode);CHKERRQ(ierr); 3728965ea79SLois Curfman McInnes 3736d4a8577SBarry Smith if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 37439ddd567SLois Curfman McInnes ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 3758965ea79SLois Curfman McInnes } 3763a40ed3dSBarry Smith PetscFunctionReturn(0); 3778965ea79SLois Curfman McInnes } 3788965ea79SLois Curfman McInnes 379dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIDense(Mat A) 3808965ea79SLois Curfman McInnes { 381dfbe8321SBarry Smith PetscErrorCode ierr; 38239ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 3833a40ed3dSBarry Smith 3843a40ed3dSBarry Smith PetscFunctionBegin; 3853a40ed3dSBarry Smith ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 3863a40ed3dSBarry Smith PetscFunctionReturn(0); 3878965ea79SLois Curfman McInnes } 3888965ea79SLois Curfman McInnes 389637a0070SStefano Zampini PetscErrorCode MatZeroRows_MPIDense(Mat A,PetscInt n,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 3908965ea79SLois Curfman McInnes { 39139ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 3926849ba73SBarry Smith PetscErrorCode ierr; 393637a0070SStefano Zampini PetscInt i,len,*lrows; 394637a0070SStefano Zampini 395637a0070SStefano Zampini PetscFunctionBegin; 396637a0070SStefano Zampini /* get locally owned rows */ 397637a0070SStefano Zampini ierr = PetscLayoutMapLocal(A->rmap,n,rows,&len,&lrows,NULL);CHKERRQ(ierr); 398637a0070SStefano Zampini /* fix right hand side if needed */ 399637a0070SStefano Zampini if (x && b) { 40097b48c8fSBarry Smith const PetscScalar *xx; 40197b48c8fSBarry Smith PetscScalar *bb; 4028965ea79SLois Curfman McInnes 40397b48c8fSBarry Smith ierr = VecGetArrayRead(x, &xx);CHKERRQ(ierr); 404637a0070SStefano Zampini ierr = VecGetArrayWrite(b, &bb);CHKERRQ(ierr); 405637a0070SStefano Zampini for (i=0;i<len;++i) bb[lrows[i]] = diag*xx[lrows[i]]; 40697b48c8fSBarry Smith ierr = VecRestoreArrayRead(x, &xx);CHKERRQ(ierr); 407637a0070SStefano Zampini ierr = VecRestoreArrayWrite(b, &bb);CHKERRQ(ierr); 40897b48c8fSBarry Smith } 409637a0070SStefano Zampini ierr = MatZeroRows(l->A,len,lrows,0.0,NULL,NULL);CHKERRQ(ierr); 410e2eb51b1SBarry Smith if (diag != 0.0) { 411637a0070SStefano Zampini Vec d; 412b9679d65SBarry Smith 413637a0070SStefano Zampini ierr = MatCreateVecs(A,NULL,&d);CHKERRQ(ierr); 414637a0070SStefano Zampini ierr = VecSet(d,diag);CHKERRQ(ierr); 415637a0070SStefano Zampini ierr = MatDiagonalSet(A,d,INSERT_VALUES);CHKERRQ(ierr); 416637a0070SStefano Zampini ierr = VecDestroy(&d);CHKERRQ(ierr); 417b9679d65SBarry Smith } 418606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 4193a40ed3dSBarry Smith PetscFunctionReturn(0); 4208965ea79SLois Curfman McInnes } 4218965ea79SLois Curfman McInnes 422cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMult_SeqDense(Mat,Vec,Vec); 423cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultAdd_SeqDense(Mat,Vec,Vec,Vec); 424cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTranspose_SeqDense(Mat,Vec,Vec); 425cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTransposeAdd_SeqDense(Mat,Vec,Vec,Vec); 426cc2e6a90SBarry Smith 427dfbe8321SBarry Smith PetscErrorCode MatMult_MPIDense(Mat mat,Vec xx,Vec yy) 4288965ea79SLois Curfman McInnes { 42939ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 430dfbe8321SBarry Smith PetscErrorCode ierr; 431637a0070SStefano Zampini const PetscScalar *ax; 432637a0070SStefano Zampini PetscScalar *ay; 433c456f294SBarry Smith 4343a40ed3dSBarry Smith PetscFunctionBegin; 435637a0070SStefano Zampini ierr = VecGetArrayReadInPlace(xx,&ax);CHKERRQ(ierr); 436637a0070SStefano Zampini ierr = VecGetArrayInPlace(mdn->lvec,&ay);CHKERRQ(ierr); 437637a0070SStefano Zampini ierr = PetscSFBcastBegin(mdn->Mvctx,MPIU_SCALAR,ax,ay);CHKERRQ(ierr); 438637a0070SStefano Zampini ierr = PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ax,ay);CHKERRQ(ierr); 439637a0070SStefano Zampini ierr = VecRestoreArrayInPlace(mdn->lvec,&ay);CHKERRQ(ierr); 440637a0070SStefano Zampini ierr = VecRestoreArrayReadInPlace(xx,&ax);CHKERRQ(ierr); 441637a0070SStefano Zampini ierr = (*mdn->A->ops->mult)(mdn->A,mdn->lvec,yy);CHKERRQ(ierr); 4423a40ed3dSBarry Smith PetscFunctionReturn(0); 4438965ea79SLois Curfman McInnes } 4448965ea79SLois Curfman McInnes 445dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz) 4468965ea79SLois Curfman McInnes { 44739ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 448dfbe8321SBarry Smith PetscErrorCode ierr; 449637a0070SStefano Zampini const PetscScalar *ax; 450637a0070SStefano Zampini PetscScalar *ay; 451c456f294SBarry Smith 4523a40ed3dSBarry Smith PetscFunctionBegin; 453637a0070SStefano Zampini ierr = VecGetArrayReadInPlace(xx,&ax);CHKERRQ(ierr); 454637a0070SStefano Zampini ierr = VecGetArrayInPlace(mdn->lvec,&ay);CHKERRQ(ierr); 455637a0070SStefano Zampini ierr = PetscSFBcastBegin(mdn->Mvctx,MPIU_SCALAR,ax,ay);CHKERRQ(ierr); 456637a0070SStefano Zampini ierr = PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ax,ay);CHKERRQ(ierr); 457637a0070SStefano Zampini ierr = VecRestoreArrayInPlace(mdn->lvec,&ay);CHKERRQ(ierr); 458637a0070SStefano Zampini ierr = VecRestoreArrayReadInPlace(xx,&ax);CHKERRQ(ierr); 459637a0070SStefano Zampini ierr = (*mdn->A->ops->multadd)(mdn->A,mdn->lvec,yy,zz);CHKERRQ(ierr); 4603a40ed3dSBarry Smith PetscFunctionReturn(0); 4618965ea79SLois Curfman McInnes } 4628965ea79SLois Curfman McInnes 463dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIDense(Mat A,Vec xx,Vec yy) 464096963f5SLois Curfman McInnes { 465096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 466dfbe8321SBarry Smith PetscErrorCode ierr; 467637a0070SStefano Zampini const PetscScalar *ax; 468637a0070SStefano Zampini PetscScalar *ay; 469096963f5SLois Curfman McInnes 4703a40ed3dSBarry Smith PetscFunctionBegin; 471637a0070SStefano Zampini ierr = VecSet(yy,0.0);CHKERRQ(ierr); 472637a0070SStefano Zampini ierr = (*a->A->ops->multtranspose)(a->A,xx,a->lvec);CHKERRQ(ierr); 473637a0070SStefano Zampini ierr = VecGetArrayReadInPlace(a->lvec,&ax);CHKERRQ(ierr); 474637a0070SStefano Zampini ierr = VecGetArrayInPlace(yy,&ay);CHKERRQ(ierr); 475637a0070SStefano Zampini ierr = PetscSFReduceBegin(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM);CHKERRQ(ierr); 476637a0070SStefano Zampini ierr = PetscSFReduceEnd(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM);CHKERRQ(ierr); 477637a0070SStefano Zampini ierr = VecRestoreArrayReadInPlace(a->lvec,&ax);CHKERRQ(ierr); 478637a0070SStefano Zampini ierr = VecRestoreArrayInPlace(yy,&ay);CHKERRQ(ierr); 4793a40ed3dSBarry Smith PetscFunctionReturn(0); 480096963f5SLois Curfman McInnes } 481096963f5SLois Curfman McInnes 482dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz) 483096963f5SLois Curfman McInnes { 484096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 485dfbe8321SBarry Smith PetscErrorCode ierr; 486637a0070SStefano Zampini const PetscScalar *ax; 487637a0070SStefano Zampini PetscScalar *ay; 488096963f5SLois Curfman McInnes 4893a40ed3dSBarry Smith PetscFunctionBegin; 4903501a2bdSLois Curfman McInnes ierr = VecCopy(yy,zz);CHKERRQ(ierr); 491637a0070SStefano Zampini ierr = (*a->A->ops->multtranspose)(a->A,xx,a->lvec);CHKERRQ(ierr); 492637a0070SStefano Zampini ierr = VecGetArrayReadInPlace(a->lvec,&ax);CHKERRQ(ierr); 493637a0070SStefano Zampini ierr = VecGetArrayInPlace(zz,&ay);CHKERRQ(ierr); 494637a0070SStefano Zampini ierr = PetscSFReduceBegin(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM);CHKERRQ(ierr); 495637a0070SStefano Zampini ierr = PetscSFReduceEnd(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM);CHKERRQ(ierr); 496637a0070SStefano Zampini ierr = VecRestoreArrayReadInPlace(a->lvec,&ax);CHKERRQ(ierr); 497637a0070SStefano Zampini ierr = VecRestoreArrayInPlace(zz,&ay);CHKERRQ(ierr); 4983a40ed3dSBarry Smith PetscFunctionReturn(0); 499096963f5SLois Curfman McInnes } 500096963f5SLois Curfman McInnes 501dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIDense(Mat A,Vec v) 5028965ea79SLois Curfman McInnes { 50339ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 504dfbe8321SBarry Smith PetscErrorCode ierr; 505637a0070SStefano Zampini PetscInt lda,len,i,n,m = A->rmap->n,radd; 50687828ca2SBarry Smith PetscScalar *x,zero = 0.0; 507637a0070SStefano Zampini const PetscScalar *av; 508ed3cc1f0SBarry Smith 5093a40ed3dSBarry Smith PetscFunctionBegin; 5102dcb1b2aSMatthew Knepley ierr = VecSet(v,zero);CHKERRQ(ierr); 5111ebc52fbSHong Zhang ierr = VecGetArray(v,&x);CHKERRQ(ierr); 512096963f5SLois Curfman McInnes ierr = VecGetSize(v,&n);CHKERRQ(ierr); 513e32f2f54SBarry Smith if (n != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec"); 514d0f46423SBarry Smith len = PetscMin(a->A->rmap->n,a->A->cmap->n); 515d0f46423SBarry Smith radd = A->rmap->rstart*m; 516637a0070SStefano Zampini ierr = MatDenseGetArrayRead(a->A,&av);CHKERRQ(ierr); 517637a0070SStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 51844cd7ae7SLois Curfman McInnes for (i=0; i<len; i++) { 519637a0070SStefano Zampini x[i] = av[radd + i*lda + i]; 520096963f5SLois Curfman McInnes } 521637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(a->A,&av);CHKERRQ(ierr); 5221ebc52fbSHong Zhang ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 5233a40ed3dSBarry Smith PetscFunctionReturn(0); 5248965ea79SLois Curfman McInnes } 5258965ea79SLois Curfman McInnes 526dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIDense(Mat mat) 5278965ea79SLois Curfman McInnes { 5283501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 529dfbe8321SBarry Smith PetscErrorCode ierr; 530ed3cc1f0SBarry Smith 5313a40ed3dSBarry Smith PetscFunctionBegin; 532aa482453SBarry Smith #if defined(PETSC_USE_LOG) 533d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D, Cols=%D",mat->rmap->N,mat->cmap->N); 5348965ea79SLois Curfman McInnes #endif 5358798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 5366bf464f9SBarry Smith ierr = MatDestroy(&mdn->A);CHKERRQ(ierr); 5376bf464f9SBarry Smith ierr = VecDestroy(&mdn->lvec);CHKERRQ(ierr); 538637a0070SStefano Zampini ierr = PetscSFDestroy(&mdn->Mvctx);CHKERRQ(ierr); 5396947451fSStefano Zampini ierr = VecDestroy(&mdn->cvec);CHKERRQ(ierr); 54001b82886SBarry Smith 541bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 542dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 5438baccfbdSHong Zhang 54449a6ff4bSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",NULL);CHKERRQ(ierr); 5458baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",NULL);CHKERRQ(ierr); 5468572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",NULL);CHKERRQ(ierr); 5478572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",NULL);CHKERRQ(ierr); 5488572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",NULL);CHKERRQ(ierr); 5496947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayWrite_C",NULL);CHKERRQ(ierr); 5506947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayWrite_C",NULL);CHKERRQ(ierr); 551d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",NULL);CHKERRQ(ierr); 552d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",NULL);CHKERRQ(ierr); 553d5ea218eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseReplaceArray_C",NULL);CHKERRQ(ierr); 5548baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 5558baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",NULL);CHKERRQ(ierr); 5568baccfbdSHong Zhang #endif 557bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",NULL);CHKERRQ(ierr); 5584222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 5594222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaij_C",NULL);CHKERRQ(ierr); 560bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 561bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 56252c5f739Sprj- ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_nest_mpidense_C",NULL);CHKERRQ(ierr); 56352c5f739Sprj- ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_nest_mpidense_C",NULL);CHKERRQ(ierr); 5648baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultSymbolic_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 5658baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultNumeric_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 56686aefd0dSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",NULL);CHKERRQ(ierr); 56786aefd0dSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",NULL);CHKERRQ(ierr); 5686947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",NULL);CHKERRQ(ierr); 5696947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",NULL);CHKERRQ(ierr); 5706947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",NULL);CHKERRQ(ierr); 5716947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",NULL);CHKERRQ(ierr); 5726947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",NULL);CHKERRQ(ierr); 5736947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",NULL);CHKERRQ(ierr); 5743a40ed3dSBarry Smith PetscFunctionReturn(0); 5758965ea79SLois Curfman McInnes } 57639ddd567SLois Curfman McInnes 57752c5f739Sprj- PETSC_INTERN PetscErrorCode MatView_SeqDense(Mat,PetscViewer); 57852c5f739Sprj- 5799804daf3SBarry Smith #include <petscdraw.h> 5806849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 5818965ea79SLois Curfman McInnes { 58239ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 583dfbe8321SBarry Smith PetscErrorCode ierr; 5847da1fb6eSBarry Smith PetscMPIInt rank = mdn->rank; 58519fd82e9SBarry Smith PetscViewerType vtype; 586ace3abfcSBarry Smith PetscBool iascii,isdraw; 587b0a32e0cSBarry Smith PetscViewer sviewer; 588f3ef73ceSBarry Smith PetscViewerFormat format; 5898965ea79SLois Curfman McInnes 5903a40ed3dSBarry Smith PetscFunctionBegin; 591251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 592251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 59332077d6dSBarry Smith if (iascii) { 594b0a32e0cSBarry Smith ierr = PetscViewerGetType(viewer,&vtype);CHKERRQ(ierr); 595b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 596456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 5974e220ebcSLois Curfman McInnes MatInfo info; 598888f2ed8SSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 5991575c14dSBarry Smith ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr); 6007b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer," [%d] local rows %D nz %D nz alloced %D mem %D \n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory);CHKERRQ(ierr); 601b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 6021575c14dSBarry Smith ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr); 603637a0070SStefano Zampini ierr = PetscSFView(mdn->Mvctx,viewer);CHKERRQ(ierr); 6043a40ed3dSBarry Smith PetscFunctionReturn(0); 605fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 6063a40ed3dSBarry Smith PetscFunctionReturn(0); 6078965ea79SLois Curfman McInnes } 608f1af5d2fSBarry Smith } else if (isdraw) { 609b0a32e0cSBarry Smith PetscDraw draw; 610ace3abfcSBarry Smith PetscBool isnull; 611f1af5d2fSBarry Smith 612b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 613b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 614f1af5d2fSBarry Smith if (isnull) PetscFunctionReturn(0); 615f1af5d2fSBarry Smith } 61677ed5343SBarry Smith 6177da1fb6eSBarry Smith { 6188965ea79SLois Curfman McInnes /* assemble the entire matrix onto first processor. */ 6198965ea79SLois Curfman McInnes Mat A; 620d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,m,row,i,nz; 621ba8c8a56SBarry Smith PetscInt *cols; 622ba8c8a56SBarry Smith PetscScalar *vals; 6238965ea79SLois Curfman McInnes 624ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr); 6258965ea79SLois Curfman McInnes if (!rank) { 626f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 6273a40ed3dSBarry Smith } else { 628f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 6298965ea79SLois Curfman McInnes } 6307adad957SLisandro Dalcin /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */ 631878740d9SKris Buschelman ierr = MatSetType(A,MATMPIDENSE);CHKERRQ(ierr); 6320298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(A,NULL);CHKERRQ(ierr); 6333bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr); 6348965ea79SLois Curfman McInnes 63539ddd567SLois Curfman McInnes /* Copy the matrix ... This isn't the most efficient means, 63639ddd567SLois Curfman McInnes but it's quick for now */ 63751022da4SBarry Smith A->insertmode = INSERT_VALUES; 6382205254eSKarl Rupp 6392205254eSKarl Rupp row = mat->rmap->rstart; 6402205254eSKarl Rupp m = mdn->A->rmap->n; 6418965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 642ba8c8a56SBarry Smith ierr = MatGetRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 643ba8c8a56SBarry Smith ierr = MatSetValues_MPIDense(A,1,&row,nz,cols,vals,INSERT_VALUES);CHKERRQ(ierr); 644ba8c8a56SBarry Smith ierr = MatRestoreRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 64539ddd567SLois Curfman McInnes row++; 6468965ea79SLois Curfman McInnes } 6478965ea79SLois Curfman McInnes 6486d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 6496d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 6503f08860eSBarry Smith ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 651b9b97703SBarry Smith if (!rank) { 6521a9d3c3cSBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPIDense*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr); 6537da1fb6eSBarry Smith ierr = MatView_SeqDense(((Mat_MPIDense*)(A->data))->A,sviewer);CHKERRQ(ierr); 6548965ea79SLois Curfman McInnes } 6553f08860eSBarry Smith ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 656b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 6576bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 6588965ea79SLois Curfman McInnes } 6593a40ed3dSBarry Smith PetscFunctionReturn(0); 6608965ea79SLois Curfman McInnes } 6618965ea79SLois Curfman McInnes 662dfbe8321SBarry Smith PetscErrorCode MatView_MPIDense(Mat mat,PetscViewer viewer) 6638965ea79SLois Curfman McInnes { 664dfbe8321SBarry Smith PetscErrorCode ierr; 665ace3abfcSBarry Smith PetscBool iascii,isbinary,isdraw,issocket; 6668965ea79SLois Curfman McInnes 667433994e6SBarry Smith PetscFunctionBegin; 668251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 669251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 670251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 671251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 6720f5bd95cSBarry Smith 67332077d6dSBarry Smith if (iascii || issocket || isdraw) { 674f1af5d2fSBarry Smith ierr = MatView_MPIDense_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 6750f5bd95cSBarry Smith } else if (isbinary) { 6768491ab44SLisandro Dalcin ierr = MatView_Dense_Binary(mat,viewer);CHKERRQ(ierr); 67711aeaf0aSBarry Smith } 6783a40ed3dSBarry Smith PetscFunctionReturn(0); 6798965ea79SLois Curfman McInnes } 6808965ea79SLois Curfman McInnes 681dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info) 6828965ea79SLois Curfman McInnes { 6833501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 6843501a2bdSLois Curfman McInnes Mat mdn = mat->A; 685dfbe8321SBarry Smith PetscErrorCode ierr; 6863966268fSBarry Smith PetscLogDouble isend[5],irecv[5]; 6878965ea79SLois Curfman McInnes 6883a40ed3dSBarry Smith PetscFunctionBegin; 6894e220ebcSLois Curfman McInnes info->block_size = 1.0; 6902205254eSKarl Rupp 6914e220ebcSLois Curfman McInnes ierr = MatGetInfo(mdn,MAT_LOCAL,info);CHKERRQ(ierr); 6922205254eSKarl Rupp 6934e220ebcSLois Curfman McInnes isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 6944e220ebcSLois Curfman McInnes isend[3] = info->memory; isend[4] = info->mallocs; 6958965ea79SLois Curfman McInnes if (flag == MAT_LOCAL) { 6964e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 6974e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 6984e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 6994e220ebcSLois Curfman McInnes info->memory = isend[3]; 7004e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 7018965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 7023966268fSBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 7032205254eSKarl Rupp 7044e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7054e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7064e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7074e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7084e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7098965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 7103966268fSBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 7112205254eSKarl Rupp 7124e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7134e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7144e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7154e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7164e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7178965ea79SLois Curfman McInnes } 7184e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 7194e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 7204e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 7213a40ed3dSBarry Smith PetscFunctionReturn(0); 7228965ea79SLois Curfman McInnes } 7238965ea79SLois Curfman McInnes 724ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIDense(Mat A,MatOption op,PetscBool flg) 7258965ea79SLois Curfman McInnes { 72639ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 727dfbe8321SBarry Smith PetscErrorCode ierr; 7288965ea79SLois Curfman McInnes 7293a40ed3dSBarry Smith PetscFunctionBegin; 73012c028f9SKris Buschelman switch (op) { 731512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 73212c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 73312c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 73443674050SBarry Smith MatCheckPreallocated(A,1); 7354e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 73612c028f9SKris Buschelman break; 73712c028f9SKris Buschelman case MAT_ROW_ORIENTED: 73843674050SBarry Smith MatCheckPreallocated(A,1); 7394e0d8c25SBarry Smith a->roworiented = flg; 7404e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 74112c028f9SKris Buschelman break; 7424e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 74313fa8e87SLisandro Dalcin case MAT_KEEP_NONZERO_PATTERN: 74412c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 745071fcb05SBarry Smith case MAT_SORTED_FULL: 746290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 74712c028f9SKris Buschelman break; 74812c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 7494e0d8c25SBarry Smith a->donotstash = flg; 75012c028f9SKris Buschelman break; 75177e54ba9SKris Buschelman case MAT_SYMMETRIC: 75277e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 7539a4540c5SBarry Smith case MAT_HERMITIAN: 7549a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 755600fe468SBarry Smith case MAT_IGNORE_LOWER_TRIANGULAR: 7565d7aebe8SStefano Zampini case MAT_IGNORE_ZERO_ENTRIES: 757290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 75877e54ba9SKris Buschelman break; 75912c028f9SKris Buschelman default: 760e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %s",MatOptions[op]); 7613a40ed3dSBarry Smith } 7623a40ed3dSBarry Smith PetscFunctionReturn(0); 7638965ea79SLois Curfman McInnes } 7648965ea79SLois Curfman McInnes 765dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIDense(Mat A,Vec ll,Vec rr) 7665b2fa520SLois Curfman McInnes { 7675b2fa520SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 768637a0070SStefano Zampini const PetscScalar *l; 769637a0070SStefano Zampini PetscScalar x,*v,*vv,*r; 770dfbe8321SBarry Smith PetscErrorCode ierr; 771637a0070SStefano Zampini PetscInt i,j,s2a,s3a,s2,s3,m=mdn->A->rmap->n,n=mdn->A->cmap->n,lda; 7725b2fa520SLois Curfman McInnes 7735b2fa520SLois Curfman McInnes PetscFunctionBegin; 774637a0070SStefano Zampini ierr = MatDenseGetArray(mdn->A,&vv);CHKERRQ(ierr); 775637a0070SStefano Zampini ierr = MatDenseGetLDA(mdn->A,&lda);CHKERRQ(ierr); 77672d926a5SLois Curfman McInnes ierr = MatGetLocalSize(A,&s2,&s3);CHKERRQ(ierr); 7775b2fa520SLois Curfman McInnes if (ll) { 77872d926a5SLois Curfman McInnes ierr = VecGetLocalSize(ll,&s2a);CHKERRQ(ierr); 779637a0070SStefano Zampini if (s2a != s2) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vector non-conforming local size, %D != %D", s2a, s2); 780bca11509SBarry Smith ierr = VecGetArrayRead(ll,&l);CHKERRQ(ierr); 7815b2fa520SLois Curfman McInnes for (i=0; i<m; i++) { 7825b2fa520SLois Curfman McInnes x = l[i]; 783637a0070SStefano Zampini v = vv + i; 784637a0070SStefano Zampini for (j=0; j<n; j++) { (*v) *= x; v+= lda;} 7855b2fa520SLois Curfman McInnes } 786bca11509SBarry Smith ierr = VecRestoreArrayRead(ll,&l);CHKERRQ(ierr); 787637a0070SStefano Zampini ierr = PetscLogFlops(1.0*n*m);CHKERRQ(ierr); 7885b2fa520SLois Curfman McInnes } 7895b2fa520SLois Curfman McInnes if (rr) { 790637a0070SStefano Zampini const PetscScalar *ar; 791637a0070SStefano Zampini 792175be7b4SMatthew Knepley ierr = VecGetLocalSize(rr,&s3a);CHKERRQ(ierr); 793e32f2f54SBarry Smith if (s3a != s3) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vec non-conforming local size, %d != %d.", s3a, s3); 794637a0070SStefano Zampini ierr = VecGetArrayRead(rr,&ar);CHKERRQ(ierr); 795637a0070SStefano Zampini ierr = VecGetArray(mdn->lvec,&r);CHKERRQ(ierr); 796637a0070SStefano Zampini ierr = PetscSFBcastBegin(mdn->Mvctx,MPIU_SCALAR,ar,r);CHKERRQ(ierr); 797637a0070SStefano Zampini ierr = PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ar,r);CHKERRQ(ierr); 798637a0070SStefano Zampini ierr = VecRestoreArrayRead(rr,&ar);CHKERRQ(ierr); 7995b2fa520SLois Curfman McInnes for (i=0; i<n; i++) { 8005b2fa520SLois Curfman McInnes x = r[i]; 801637a0070SStefano Zampini v = vv + i*lda; 8022205254eSKarl Rupp for (j=0; j<m; j++) (*v++) *= x; 8035b2fa520SLois Curfman McInnes } 804637a0070SStefano Zampini ierr = VecRestoreArray(mdn->lvec,&r);CHKERRQ(ierr); 805637a0070SStefano Zampini ierr = PetscLogFlops(1.0*n*m);CHKERRQ(ierr); 8065b2fa520SLois Curfman McInnes } 807637a0070SStefano Zampini ierr = MatDenseRestoreArray(mdn->A,&vv);CHKERRQ(ierr); 8085b2fa520SLois Curfman McInnes PetscFunctionReturn(0); 8095b2fa520SLois Curfman McInnes } 8105b2fa520SLois Curfman McInnes 811dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIDense(Mat A,NormType type,PetscReal *nrm) 812096963f5SLois Curfman McInnes { 8133501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 814dfbe8321SBarry Smith PetscErrorCode ierr; 81513f74950SBarry Smith PetscInt i,j; 816329f5518SBarry Smith PetscReal sum = 0.0; 817637a0070SStefano Zampini const PetscScalar *av,*v; 8183501a2bdSLois Curfman McInnes 8193a40ed3dSBarry Smith PetscFunctionBegin; 820637a0070SStefano Zampini ierr = MatDenseGetArrayRead(mdn->A,&av);CHKERRQ(ierr); 821637a0070SStefano Zampini v = av; 8223501a2bdSLois Curfman McInnes if (mdn->size == 1) { 823064f8208SBarry Smith ierr = MatNorm(mdn->A,type,nrm);CHKERRQ(ierr); 8243501a2bdSLois Curfman McInnes } else { 8253501a2bdSLois Curfman McInnes if (type == NORM_FROBENIUS) { 826d0f46423SBarry Smith for (i=0; i<mdn->A->cmap->n*mdn->A->rmap->n; i++) { 827329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 8283501a2bdSLois Curfman McInnes } 829b2566f29SBarry Smith ierr = MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 8308f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 831dc0b31edSSatish Balay ierr = PetscLogFlops(2.0*mdn->A->cmap->n*mdn->A->rmap->n);CHKERRQ(ierr); 8323a40ed3dSBarry Smith } else if (type == NORM_1) { 833329f5518SBarry Smith PetscReal *tmp,*tmp2; 834580bdb30SBarry Smith ierr = PetscCalloc2(A->cmap->N,&tmp,A->cmap->N,&tmp2);CHKERRQ(ierr); 835064f8208SBarry Smith *nrm = 0.0; 836637a0070SStefano Zampini v = av; 837d0f46423SBarry Smith for (j=0; j<mdn->A->cmap->n; j++) { 838d0f46423SBarry Smith for (i=0; i<mdn->A->rmap->n; i++) { 83967e560aaSBarry Smith tmp[j] += PetscAbsScalar(*v); v++; 8403501a2bdSLois Curfman McInnes } 8413501a2bdSLois Curfman McInnes } 842b2566f29SBarry Smith ierr = MPIU_Allreduce(tmp,tmp2,A->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 843d0f46423SBarry Smith for (j=0; j<A->cmap->N; j++) { 844064f8208SBarry Smith if (tmp2[j] > *nrm) *nrm = tmp2[j]; 8453501a2bdSLois Curfman McInnes } 8468627564fSBarry Smith ierr = PetscFree2(tmp,tmp2);CHKERRQ(ierr); 847d0f46423SBarry Smith ierr = PetscLogFlops(A->cmap->n*A->rmap->n);CHKERRQ(ierr); 8483a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 849329f5518SBarry Smith PetscReal ntemp; 8503501a2bdSLois Curfman McInnes ierr = MatNorm(mdn->A,type,&ntemp);CHKERRQ(ierr); 851b2566f29SBarry Smith ierr = MPIU_Allreduce(&ntemp,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 852ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"No support for two norm"); 8533501a2bdSLois Curfman McInnes } 854637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(mdn->A,&av);CHKERRQ(ierr); 8553a40ed3dSBarry Smith PetscFunctionReturn(0); 8563501a2bdSLois Curfman McInnes } 8573501a2bdSLois Curfman McInnes 858fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIDense(Mat A,MatReuse reuse,Mat *matout) 8593501a2bdSLois Curfman McInnes { 8603501a2bdSLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 8613501a2bdSLois Curfman McInnes Mat B; 862d0f46423SBarry Smith PetscInt M = A->rmap->N,N = A->cmap->N,m,n,*rwork,rstart = A->rmap->rstart; 8636849ba73SBarry Smith PetscErrorCode ierr; 864637a0070SStefano Zampini PetscInt j,i,lda; 86587828ca2SBarry Smith PetscScalar *v; 8663501a2bdSLois Curfman McInnes 8673a40ed3dSBarry Smith PetscFunctionBegin; 868cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 869ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 870d0f46423SBarry Smith ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr); 8717adad957SLisandro Dalcin ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr); 8720298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(B,NULL);CHKERRQ(ierr); 873637a0070SStefano Zampini } else B = *matout; 8743501a2bdSLois Curfman McInnes 875637a0070SStefano Zampini m = a->A->rmap->n; n = a->A->cmap->n; 876637a0070SStefano Zampini ierr = MatDenseGetArrayRead(a->A,(const PetscScalar**)&v);CHKERRQ(ierr); 877637a0070SStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 878785e854fSJed Brown ierr = PetscMalloc1(m,&rwork);CHKERRQ(ierr); 8793501a2bdSLois Curfman McInnes for (i=0; i<m; i++) rwork[i] = rstart + i; 8801acff37aSSatish Balay for (j=0; j<n; j++) { 8813501a2bdSLois Curfman McInnes ierr = MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES);CHKERRQ(ierr); 882637a0070SStefano Zampini v += lda; 8833501a2bdSLois Curfman McInnes } 884637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(a->A,(const PetscScalar**)&v);CHKERRQ(ierr); 885606d414cSSatish Balay ierr = PetscFree(rwork);CHKERRQ(ierr); 8866d4a8577SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 8876d4a8577SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 888cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) { 8893501a2bdSLois Curfman McInnes *matout = B; 8903501a2bdSLois Curfman McInnes } else { 89128be2f97SBarry Smith ierr = MatHeaderMerge(A,&B);CHKERRQ(ierr); 8923501a2bdSLois Curfman McInnes } 8933a40ed3dSBarry Smith PetscFunctionReturn(0); 894096963f5SLois Curfman McInnes } 895096963f5SLois Curfman McInnes 8966849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat*); 89752c5f739Sprj- PETSC_INTERN PetscErrorCode MatScale_MPIDense(Mat,PetscScalar); 8988965ea79SLois Curfman McInnes 8994994cf47SJed Brown PetscErrorCode MatSetUp_MPIDense(Mat A) 900273d9f13SBarry Smith { 901dfbe8321SBarry Smith PetscErrorCode ierr; 902273d9f13SBarry Smith 903273d9f13SBarry Smith PetscFunctionBegin; 90418992e5dSStefano Zampini ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr); 90518992e5dSStefano Zampini ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr); 90618992e5dSStefano Zampini if (!A->preallocated) { 907273d9f13SBarry Smith ierr = MatMPIDenseSetPreallocation(A,0);CHKERRQ(ierr); 90818992e5dSStefano Zampini } 909273d9f13SBarry Smith PetscFunctionReturn(0); 910273d9f13SBarry Smith } 911273d9f13SBarry Smith 912488007eeSBarry Smith PetscErrorCode MatAXPY_MPIDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str) 913488007eeSBarry Smith { 914488007eeSBarry Smith PetscErrorCode ierr; 915488007eeSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)Y->data, *B = (Mat_MPIDense*)X->data; 916488007eeSBarry Smith 917488007eeSBarry Smith PetscFunctionBegin; 918488007eeSBarry Smith ierr = MatAXPY(A->A,alpha,B->A,str);CHKERRQ(ierr); 919488007eeSBarry Smith PetscFunctionReturn(0); 920488007eeSBarry Smith } 921488007eeSBarry Smith 9227087cfbeSBarry Smith PetscErrorCode MatConjugate_MPIDense(Mat mat) 923ba337c44SJed Brown { 924ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)mat->data; 925ba337c44SJed Brown PetscErrorCode ierr; 926ba337c44SJed Brown 927ba337c44SJed Brown PetscFunctionBegin; 928ba337c44SJed Brown ierr = MatConjugate(a->A);CHKERRQ(ierr); 929ba337c44SJed Brown PetscFunctionReturn(0); 930ba337c44SJed Brown } 931ba337c44SJed Brown 932ba337c44SJed Brown PetscErrorCode MatRealPart_MPIDense(Mat A) 933ba337c44SJed Brown { 934ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 935ba337c44SJed Brown PetscErrorCode ierr; 936ba337c44SJed Brown 937ba337c44SJed Brown PetscFunctionBegin; 938ba337c44SJed Brown ierr = MatRealPart(a->A);CHKERRQ(ierr); 939ba337c44SJed Brown PetscFunctionReturn(0); 940ba337c44SJed Brown } 941ba337c44SJed Brown 942ba337c44SJed Brown PetscErrorCode MatImaginaryPart_MPIDense(Mat A) 943ba337c44SJed Brown { 944ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 945ba337c44SJed Brown PetscErrorCode ierr; 946ba337c44SJed Brown 947ba337c44SJed Brown PetscFunctionBegin; 948ba337c44SJed Brown ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 949ba337c44SJed Brown PetscFunctionReturn(0); 950ba337c44SJed Brown } 951ba337c44SJed Brown 95249a6ff4bSBarry Smith static PetscErrorCode MatGetColumnVector_MPIDense(Mat A,Vec v,PetscInt col) 95349a6ff4bSBarry Smith { 95449a6ff4bSBarry Smith PetscErrorCode ierr; 955637a0070SStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*) A->data; 95649a6ff4bSBarry Smith 95749a6ff4bSBarry Smith PetscFunctionBegin; 958637a0070SStefano Zampini if (!a->A) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Missing local matrix"); 959637a0070SStefano Zampini if (!a->A->ops->getcolumnvector) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Missing get column operation"); 960637a0070SStefano Zampini ierr = (*a->A->ops->getcolumnvector)(a->A,v,col);CHKERRQ(ierr); 96149a6ff4bSBarry Smith PetscFunctionReturn(0); 96249a6ff4bSBarry Smith } 96349a6ff4bSBarry Smith 96452c5f739Sprj- PETSC_INTERN PetscErrorCode MatGetColumnNorms_SeqDense(Mat,NormType,PetscReal*); 96552c5f739Sprj- 9660716a85fSBarry Smith PetscErrorCode MatGetColumnNorms_MPIDense(Mat A,NormType type,PetscReal *norms) 9670716a85fSBarry Smith { 9680716a85fSBarry Smith PetscErrorCode ierr; 9690716a85fSBarry Smith PetscInt i,n; 9700716a85fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*) A->data; 9710716a85fSBarry Smith PetscReal *work; 9720716a85fSBarry Smith 9730716a85fSBarry Smith PetscFunctionBegin; 9740298fd71SBarry Smith ierr = MatGetSize(A,NULL,&n);CHKERRQ(ierr); 975785e854fSJed Brown ierr = PetscMalloc1(n,&work);CHKERRQ(ierr); 9760716a85fSBarry Smith ierr = MatGetColumnNorms_SeqDense(a->A,type,work);CHKERRQ(ierr); 9770716a85fSBarry Smith if (type == NORM_2) { 9780716a85fSBarry Smith for (i=0; i<n; i++) work[i] *= work[i]; 9790716a85fSBarry Smith } 9800716a85fSBarry Smith if (type == NORM_INFINITY) { 981b2566f29SBarry Smith ierr = MPIU_Allreduce(work,norms,n,MPIU_REAL,MPIU_MAX,A->hdr.comm);CHKERRQ(ierr); 9820716a85fSBarry Smith } else { 983b2566f29SBarry Smith ierr = MPIU_Allreduce(work,norms,n,MPIU_REAL,MPIU_SUM,A->hdr.comm);CHKERRQ(ierr); 9840716a85fSBarry Smith } 9850716a85fSBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 9860716a85fSBarry Smith if (type == NORM_2) { 9878f1a2a5eSBarry Smith for (i=0; i<n; i++) norms[i] = PetscSqrtReal(norms[i]); 9880716a85fSBarry Smith } 9890716a85fSBarry Smith PetscFunctionReturn(0); 9900716a85fSBarry Smith } 9910716a85fSBarry Smith 992637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 9936947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVec_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 9946947451fSStefano Zampini { 9956947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 9966947451fSStefano Zampini PetscErrorCode ierr; 9976947451fSStefano Zampini PetscInt lda; 9986947451fSStefano Zampini 9996947451fSStefano Zampini PetscFunctionBegin; 10006947451fSStefano Zampini if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first"); 10016947451fSStefano Zampini if (!a->cvec) { 10026947451fSStefano Zampini ierr = VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr); 10036947451fSStefano Zampini } 10046947451fSStefano Zampini a->vecinuse = col + 1; 10056947451fSStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 10066947451fSStefano Zampini ierr = MatDenseCUDAGetArray(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 10076947451fSStefano Zampini ierr = VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr); 10086947451fSStefano Zampini *v = a->cvec; 10096947451fSStefano Zampini PetscFunctionReturn(0); 10106947451fSStefano Zampini } 10116947451fSStefano Zampini 10126947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVec_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10136947451fSStefano Zampini { 10146947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10156947451fSStefano Zampini PetscErrorCode ierr; 10166947451fSStefano Zampini 10176947451fSStefano Zampini PetscFunctionBegin; 10186947451fSStefano Zampini if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec first"); 10196947451fSStefano Zampini if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector"); 10206947451fSStefano Zampini a->vecinuse = 0; 10216947451fSStefano Zampini ierr = MatDenseCUDARestoreArray(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 10226947451fSStefano Zampini ierr = VecCUDAResetArray(a->cvec);CHKERRQ(ierr); 10236947451fSStefano Zampini *v = NULL; 10246947451fSStefano Zampini PetscFunctionReturn(0); 10256947451fSStefano Zampini } 10266947451fSStefano Zampini 10276947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecRead_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10286947451fSStefano Zampini { 10296947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10306947451fSStefano Zampini PetscInt lda; 10316947451fSStefano Zampini PetscErrorCode ierr; 10326947451fSStefano Zampini 10336947451fSStefano Zampini PetscFunctionBegin; 10346947451fSStefano Zampini if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first"); 10356947451fSStefano Zampini if (!a->cvec) { 10366947451fSStefano Zampini ierr = VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr); 10376947451fSStefano Zampini } 10386947451fSStefano Zampini a->vecinuse = col + 1; 10396947451fSStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 10406947451fSStefano Zampini ierr = MatDenseCUDAGetArrayRead(a->A,&a->ptrinuse);CHKERRQ(ierr); 10416947451fSStefano Zampini ierr = VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr); 10426947451fSStefano Zampini ierr = VecLockReadPush(a->cvec);CHKERRQ(ierr); 10436947451fSStefano Zampini *v = a->cvec; 10446947451fSStefano Zampini PetscFunctionReturn(0); 10456947451fSStefano Zampini } 10466947451fSStefano Zampini 10476947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecRead_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10486947451fSStefano Zampini { 10496947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10506947451fSStefano Zampini PetscErrorCode ierr; 10516947451fSStefano Zampini 10526947451fSStefano Zampini PetscFunctionBegin; 10536947451fSStefano Zampini if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec first"); 10546947451fSStefano Zampini if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector"); 10556947451fSStefano Zampini a->vecinuse = 0; 10566947451fSStefano Zampini ierr = MatDenseCUDARestoreArrayRead(a->A,&a->ptrinuse);CHKERRQ(ierr); 10576947451fSStefano Zampini ierr = VecLockReadPop(a->cvec);CHKERRQ(ierr); 10586947451fSStefano Zampini ierr = VecCUDAResetArray(a->cvec);CHKERRQ(ierr); 10596947451fSStefano Zampini *v = NULL; 10606947451fSStefano Zampini PetscFunctionReturn(0); 10616947451fSStefano Zampini } 10626947451fSStefano Zampini 10636947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecWrite_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10646947451fSStefano Zampini { 10656947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10666947451fSStefano Zampini PetscErrorCode ierr; 10676947451fSStefano Zampini PetscInt lda; 10686947451fSStefano Zampini 10696947451fSStefano Zampini PetscFunctionBegin; 10706947451fSStefano Zampini if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first"); 10716947451fSStefano Zampini if (!a->cvec) { 10726947451fSStefano Zampini ierr = VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr); 10736947451fSStefano Zampini } 10746947451fSStefano Zampini a->vecinuse = col + 1; 10756947451fSStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 10766947451fSStefano Zampini ierr = MatDenseCUDAGetArrayWrite(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 10776947451fSStefano Zampini ierr = VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr); 10786947451fSStefano Zampini *v = a->cvec; 10796947451fSStefano Zampini PetscFunctionReturn(0); 10806947451fSStefano Zampini } 10816947451fSStefano Zampini 10826947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10836947451fSStefano Zampini { 10846947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10856947451fSStefano Zampini PetscErrorCode ierr; 10866947451fSStefano Zampini 10876947451fSStefano Zampini PetscFunctionBegin; 10886947451fSStefano Zampini if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec first"); 10896947451fSStefano Zampini if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector"); 10906947451fSStefano Zampini a->vecinuse = 0; 10916947451fSStefano Zampini ierr = MatDenseCUDARestoreArrayWrite(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 10926947451fSStefano Zampini ierr = VecCUDAResetArray(a->cvec);CHKERRQ(ierr); 10936947451fSStefano Zampini *v = NULL; 10946947451fSStefano Zampini PetscFunctionReturn(0); 10956947451fSStefano Zampini } 10966947451fSStefano Zampini 1097637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAPlaceArray_MPIDenseCUDA(Mat A, const PetscScalar *a) 1098637a0070SStefano Zampini { 1099637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1100637a0070SStefano Zampini PetscErrorCode ierr; 1101637a0070SStefano Zampini 1102637a0070SStefano Zampini PetscFunctionBegin; 11036947451fSStefano Zampini if (l->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first"); 1104637a0070SStefano Zampini ierr = MatDenseCUDAPlaceArray(l->A,a);CHKERRQ(ierr); 1105637a0070SStefano Zampini PetscFunctionReturn(0); 1106637a0070SStefano Zampini } 1107637a0070SStefano Zampini 1108637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAResetArray_MPIDenseCUDA(Mat A) 1109637a0070SStefano Zampini { 1110637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1111637a0070SStefano Zampini PetscErrorCode ierr; 1112637a0070SStefano Zampini 1113637a0070SStefano Zampini PetscFunctionBegin; 11146947451fSStefano Zampini if (l->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first"); 1115637a0070SStefano Zampini ierr = MatDenseCUDAResetArray(l->A);CHKERRQ(ierr); 1116637a0070SStefano Zampini PetscFunctionReturn(0); 1117637a0070SStefano Zampini } 1118637a0070SStefano Zampini 1119d5ea218eSStefano Zampini static PetscErrorCode MatDenseCUDAReplaceArray_MPIDenseCUDA(Mat A, const PetscScalar *a) 1120d5ea218eSStefano Zampini { 1121d5ea218eSStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1122d5ea218eSStefano Zampini PetscErrorCode ierr; 1123d5ea218eSStefano Zampini 1124d5ea218eSStefano Zampini PetscFunctionBegin; 1125d5ea218eSStefano Zampini if (l->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first"); 1126d5ea218eSStefano Zampini ierr = MatDenseCUDAReplaceArray(l->A,a);CHKERRQ(ierr); 1127d5ea218eSStefano Zampini PetscFunctionReturn(0); 1128d5ea218eSStefano Zampini } 1129d5ea218eSStefano Zampini 1130637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArrayWrite_MPIDenseCUDA(Mat A, PetscScalar **a) 1131637a0070SStefano Zampini { 1132637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1133637a0070SStefano Zampini PetscErrorCode ierr; 1134637a0070SStefano Zampini 1135637a0070SStefano Zampini PetscFunctionBegin; 1136637a0070SStefano Zampini ierr = MatDenseCUDAGetArrayWrite(l->A,a);CHKERRQ(ierr); 1137637a0070SStefano Zampini PetscFunctionReturn(0); 1138637a0070SStefano Zampini } 1139637a0070SStefano Zampini 1140637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArrayWrite_MPIDenseCUDA(Mat A, PetscScalar **a) 1141637a0070SStefano Zampini { 1142637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1143637a0070SStefano Zampini PetscErrorCode ierr; 1144637a0070SStefano Zampini 1145637a0070SStefano Zampini PetscFunctionBegin; 1146637a0070SStefano Zampini ierr = MatDenseCUDARestoreArrayWrite(l->A,a);CHKERRQ(ierr); 1147637a0070SStefano Zampini PetscFunctionReturn(0); 1148637a0070SStefano Zampini } 1149637a0070SStefano Zampini 1150637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArrayRead_MPIDenseCUDA(Mat A, const PetscScalar **a) 1151637a0070SStefano Zampini { 1152637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1153637a0070SStefano Zampini PetscErrorCode ierr; 1154637a0070SStefano Zampini 1155637a0070SStefano Zampini PetscFunctionBegin; 1156637a0070SStefano Zampini ierr = MatDenseCUDAGetArrayRead(l->A,a);CHKERRQ(ierr); 1157637a0070SStefano Zampini PetscFunctionReturn(0); 1158637a0070SStefano Zampini } 1159637a0070SStefano Zampini 1160637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArrayRead_MPIDenseCUDA(Mat A, const PetscScalar **a) 1161637a0070SStefano Zampini { 1162637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1163637a0070SStefano Zampini PetscErrorCode ierr; 1164637a0070SStefano Zampini 1165637a0070SStefano Zampini PetscFunctionBegin; 1166637a0070SStefano Zampini ierr = MatDenseCUDARestoreArrayRead(l->A,a);CHKERRQ(ierr); 1167637a0070SStefano Zampini PetscFunctionReturn(0); 1168637a0070SStefano Zampini } 1169637a0070SStefano Zampini 1170637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArray_MPIDenseCUDA(Mat A, PetscScalar **a) 1171637a0070SStefano Zampini { 1172637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1173637a0070SStefano Zampini PetscErrorCode ierr; 1174637a0070SStefano Zampini 1175637a0070SStefano Zampini PetscFunctionBegin; 1176637a0070SStefano Zampini ierr = MatDenseCUDAGetArray(l->A,a);CHKERRQ(ierr); 1177637a0070SStefano Zampini PetscFunctionReturn(0); 1178637a0070SStefano Zampini } 1179637a0070SStefano Zampini 1180637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArray_MPIDenseCUDA(Mat A, PetscScalar **a) 1181637a0070SStefano Zampini { 1182637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1183637a0070SStefano Zampini PetscErrorCode ierr; 1184637a0070SStefano Zampini 1185637a0070SStefano Zampini PetscFunctionBegin; 1186637a0070SStefano Zampini ierr = MatDenseCUDARestoreArray(l->A,a);CHKERRQ(ierr); 1187637a0070SStefano Zampini PetscFunctionReturn(0); 1188637a0070SStefano Zampini } 1189637a0070SStefano Zampini 11906947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecWrite_MPIDense(Mat,PetscInt,Vec*); 11916947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecRead_MPIDense(Mat,PetscInt,Vec*); 11926947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVec_MPIDense(Mat,PetscInt,Vec*); 11936947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDense(Mat,PetscInt,Vec*); 11946947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecRead_MPIDense(Mat,PetscInt,Vec*); 11956947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVec_MPIDense(Mat,PetscInt,Vec*); 11966947451fSStefano Zampini 1197637a0070SStefano Zampini static PetscErrorCode MatBindToCPU_MPIDenseCUDA(Mat mat,PetscBool bind) 1198637a0070SStefano Zampini { 1199637a0070SStefano Zampini Mat_MPIDense *d = (Mat_MPIDense*)mat->data; 1200637a0070SStefano Zampini PetscErrorCode ierr; 1201637a0070SStefano Zampini 1202637a0070SStefano Zampini PetscFunctionBegin; 12036947451fSStefano Zampini if (d->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first"); 1204637a0070SStefano Zampini if (d->A) { 1205637a0070SStefano Zampini ierr = MatBindToCPU(d->A,bind);CHKERRQ(ierr); 1206637a0070SStefano Zampini } 1207637a0070SStefano Zampini mat->boundtocpu = bind; 12086947451fSStefano Zampini if (!bind) { 12096947451fSStefano Zampini PetscBool iscuda; 12106947451fSStefano Zampini 12116947451fSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)d->cvec,VECMPICUDA,&iscuda);CHKERRQ(ierr); 12126947451fSStefano Zampini if (!iscuda) { 12136947451fSStefano Zampini ierr = VecDestroy(&d->cvec);CHKERRQ(ierr); 12146947451fSStefano Zampini } 12156947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDenseCUDA);CHKERRQ(ierr); 12166947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDenseCUDA);CHKERRQ(ierr); 12176947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDenseCUDA);CHKERRQ(ierr); 12186947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDenseCUDA);CHKERRQ(ierr); 12196947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDenseCUDA);CHKERRQ(ierr); 12206947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDenseCUDA);CHKERRQ(ierr); 12216947451fSStefano Zampini } else { 12226947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDense);CHKERRQ(ierr); 12236947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDense);CHKERRQ(ierr); 12246947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDense);CHKERRQ(ierr); 12256947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDense);CHKERRQ(ierr); 12266947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDense);CHKERRQ(ierr); 12276947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDense);CHKERRQ(ierr); 12286947451fSStefano Zampini } 1229637a0070SStefano Zampini PetscFunctionReturn(0); 1230637a0070SStefano Zampini } 1231637a0070SStefano Zampini 1232637a0070SStefano Zampini PetscErrorCode MatMPIDenseCUDASetPreallocation(Mat A, PetscScalar *d_data) 1233637a0070SStefano Zampini { 1234637a0070SStefano Zampini Mat_MPIDense *d = (Mat_MPIDense*)A->data; 1235637a0070SStefano Zampini PetscErrorCode ierr; 1236637a0070SStefano Zampini PetscBool iscuda; 1237637a0070SStefano Zampini 1238637a0070SStefano Zampini PetscFunctionBegin; 1239d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 1240637a0070SStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIDENSECUDA,&iscuda);CHKERRQ(ierr); 1241637a0070SStefano Zampini if (!iscuda) PetscFunctionReturn(0); 1242637a0070SStefano Zampini ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr); 1243637a0070SStefano Zampini ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr); 1244637a0070SStefano Zampini if (!d->A) { 1245637a0070SStefano Zampini ierr = MatCreate(PETSC_COMM_SELF,&d->A);CHKERRQ(ierr); 1246637a0070SStefano Zampini ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)d->A);CHKERRQ(ierr); 1247637a0070SStefano Zampini ierr = MatSetSizes(d->A,A->rmap->n,A->cmap->N,A->rmap->n,A->cmap->N);CHKERRQ(ierr); 1248637a0070SStefano Zampini } 1249637a0070SStefano Zampini ierr = MatSetType(d->A,MATSEQDENSECUDA);CHKERRQ(ierr); 1250637a0070SStefano Zampini ierr = MatSeqDenseCUDASetPreallocation(d->A,d_data);CHKERRQ(ierr); 1251637a0070SStefano Zampini A->preallocated = PETSC_TRUE; 1252637a0070SStefano Zampini PetscFunctionReturn(0); 1253637a0070SStefano Zampini } 1254637a0070SStefano Zampini #endif 1255637a0070SStefano Zampini 125673a71a0fSBarry Smith static PetscErrorCode MatSetRandom_MPIDense(Mat x,PetscRandom rctx) 125773a71a0fSBarry Smith { 125873a71a0fSBarry Smith Mat_MPIDense *d = (Mat_MPIDense*)x->data; 125973a71a0fSBarry Smith PetscErrorCode ierr; 126073a71a0fSBarry Smith 126173a71a0fSBarry Smith PetscFunctionBegin; 1262637a0070SStefano Zampini ierr = MatSetRandom(d->A,rctx);CHKERRQ(ierr); 126373a71a0fSBarry Smith PetscFunctionReturn(0); 126473a71a0fSBarry Smith } 126573a71a0fSBarry Smith 126652c5f739Sprj- PETSC_INTERN PetscErrorCode MatMatMultNumeric_MPIDense(Mat A,Mat,Mat); 1267fd4e9aacSBarry Smith 12683b49f96aSBarry Smith static PetscErrorCode MatMissingDiagonal_MPIDense(Mat A,PetscBool *missing,PetscInt *d) 12693b49f96aSBarry Smith { 12703b49f96aSBarry Smith PetscFunctionBegin; 12713b49f96aSBarry Smith *missing = PETSC_FALSE; 12723b49f96aSBarry Smith PetscFunctionReturn(0); 12733b49f96aSBarry Smith } 12743b49f96aSBarry Smith 12754222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat,Mat,PetscReal,Mat); 1276cc48ffa7SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat,Mat,Mat); 1277cc48ffa7SToby Isaac 12788965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/ 127909dc0095SBarry Smith static struct _MatOps MatOps_Values = { MatSetValues_MPIDense, 128009dc0095SBarry Smith MatGetRow_MPIDense, 128109dc0095SBarry Smith MatRestoreRow_MPIDense, 128209dc0095SBarry Smith MatMult_MPIDense, 128397304618SKris Buschelman /* 4*/ MatMultAdd_MPIDense, 12847c922b88SBarry Smith MatMultTranspose_MPIDense, 12857c922b88SBarry Smith MatMultTransposeAdd_MPIDense, 12868965ea79SLois Curfman McInnes 0, 128709dc0095SBarry Smith 0, 128809dc0095SBarry Smith 0, 128997304618SKris Buschelman /* 10*/ 0, 129009dc0095SBarry Smith 0, 129109dc0095SBarry Smith 0, 129209dc0095SBarry Smith 0, 129309dc0095SBarry Smith MatTranspose_MPIDense, 129497304618SKris Buschelman /* 15*/ MatGetInfo_MPIDense, 12956e4ee0c6SHong Zhang MatEqual_MPIDense, 129609dc0095SBarry Smith MatGetDiagonal_MPIDense, 12975b2fa520SLois Curfman McInnes MatDiagonalScale_MPIDense, 129809dc0095SBarry Smith MatNorm_MPIDense, 129997304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPIDense, 130009dc0095SBarry Smith MatAssemblyEnd_MPIDense, 130109dc0095SBarry Smith MatSetOption_MPIDense, 130209dc0095SBarry Smith MatZeroEntries_MPIDense, 1303d519adbfSMatthew Knepley /* 24*/ MatZeroRows_MPIDense, 1304919b68f7SBarry Smith 0, 130501b82886SBarry Smith 0, 130601b82886SBarry Smith 0, 130701b82886SBarry Smith 0, 13084994cf47SJed Brown /* 29*/ MatSetUp_MPIDense, 1309273d9f13SBarry Smith 0, 131009dc0095SBarry Smith 0, 1311c56a70eeSBarry Smith MatGetDiagonalBlock_MPIDense, 13128c778c55SBarry Smith 0, 1313d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPIDense, 131409dc0095SBarry Smith 0, 131509dc0095SBarry Smith 0, 131609dc0095SBarry Smith 0, 131709dc0095SBarry Smith 0, 1318d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPIDense, 13197dae84e0SHong Zhang MatCreateSubMatrices_MPIDense, 132009dc0095SBarry Smith 0, 132109dc0095SBarry Smith MatGetValues_MPIDense, 132209dc0095SBarry Smith 0, 1323d519adbfSMatthew Knepley /* 44*/ 0, 132409dc0095SBarry Smith MatScale_MPIDense, 13257d68702bSBarry Smith MatShift_Basic, 132609dc0095SBarry Smith 0, 132709dc0095SBarry Smith 0, 132873a71a0fSBarry Smith /* 49*/ MatSetRandom_MPIDense, 132909dc0095SBarry Smith 0, 133009dc0095SBarry Smith 0, 133109dc0095SBarry Smith 0, 133209dc0095SBarry Smith 0, 1333d519adbfSMatthew Knepley /* 54*/ 0, 133409dc0095SBarry Smith 0, 133509dc0095SBarry Smith 0, 133609dc0095SBarry Smith 0, 133709dc0095SBarry Smith 0, 13387dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPIDense, 1339b9b97703SBarry Smith MatDestroy_MPIDense, 1340b9b97703SBarry Smith MatView_MPIDense, 1341357abbc8SBarry Smith 0, 134297304618SKris Buschelman 0, 1343d519adbfSMatthew Knepley /* 64*/ 0, 134497304618SKris Buschelman 0, 134597304618SKris Buschelman 0, 134697304618SKris Buschelman 0, 134797304618SKris Buschelman 0, 1348d519adbfSMatthew Knepley /* 69*/ 0, 134997304618SKris Buschelman 0, 135097304618SKris Buschelman 0, 135197304618SKris Buschelman 0, 135297304618SKris Buschelman 0, 1353d519adbfSMatthew Knepley /* 74*/ 0, 135497304618SKris Buschelman 0, 135597304618SKris Buschelman 0, 135697304618SKris Buschelman 0, 135797304618SKris Buschelman 0, 1358d519adbfSMatthew Knepley /* 79*/ 0, 135997304618SKris Buschelman 0, 136097304618SKris Buschelman 0, 136197304618SKris Buschelman 0, 13625bba2384SShri Abhyankar /* 83*/ MatLoad_MPIDense, 1363865e5f61SKris Buschelman 0, 1364865e5f61SKris Buschelman 0, 1365865e5f61SKris Buschelman 0, 1366865e5f61SKris Buschelman 0, 1367865e5f61SKris Buschelman 0, 13684222ddf1SHong Zhang /* 89*/ 0, 13694222ddf1SHong Zhang 0, 1370fd4e9aacSBarry Smith MatMatMultNumeric_MPIDense, 13712fbe02b9SBarry Smith 0, 1372ba337c44SJed Brown 0, 1373d519adbfSMatthew Knepley /* 94*/ 0, 13744222ddf1SHong Zhang 0, 13754222ddf1SHong Zhang 0, 1376cc48ffa7SToby Isaac MatMatTransposeMultNumeric_MPIDense_MPIDense, 1377ba337c44SJed Brown 0, 13784222ddf1SHong Zhang /* 99*/ MatProductSetFromOptions_MPIDense, 1379ba337c44SJed Brown 0, 1380ba337c44SJed Brown 0, 1381ba337c44SJed Brown MatConjugate_MPIDense, 1382ba337c44SJed Brown 0, 1383ba337c44SJed Brown /*104*/ 0, 1384ba337c44SJed Brown MatRealPart_MPIDense, 1385ba337c44SJed Brown MatImaginaryPart_MPIDense, 138686d161a7SShri Abhyankar 0, 138786d161a7SShri Abhyankar 0, 138886d161a7SShri Abhyankar /*109*/ 0, 138986d161a7SShri Abhyankar 0, 139086d161a7SShri Abhyankar 0, 139149a6ff4bSBarry Smith MatGetColumnVector_MPIDense, 13923b49f96aSBarry Smith MatMissingDiagonal_MPIDense, 139386d161a7SShri Abhyankar /*114*/ 0, 139486d161a7SShri Abhyankar 0, 139586d161a7SShri Abhyankar 0, 139686d161a7SShri Abhyankar 0, 139786d161a7SShri Abhyankar 0, 139886d161a7SShri Abhyankar /*119*/ 0, 139986d161a7SShri Abhyankar 0, 140086d161a7SShri Abhyankar 0, 14010716a85fSBarry Smith 0, 14020716a85fSBarry Smith 0, 14030716a85fSBarry Smith /*124*/ 0, 14043964eb88SJed Brown MatGetColumnNorms_MPIDense, 14053964eb88SJed Brown 0, 14063964eb88SJed Brown 0, 14073964eb88SJed Brown 0, 14083964eb88SJed Brown /*129*/ 0, 14094222ddf1SHong Zhang 0, 14104222ddf1SHong Zhang 0, 1411cb20be35SHong Zhang MatTransposeMatMultNumeric_MPIDense_MPIDense, 14123964eb88SJed Brown 0, 14133964eb88SJed Brown /*134*/ 0, 14143964eb88SJed Brown 0, 14153964eb88SJed Brown 0, 14163964eb88SJed Brown 0, 14173964eb88SJed Brown 0, 14183964eb88SJed Brown /*139*/ 0, 1419f9426fe0SMark Adams 0, 142094e2cb23SJakub Kruzik 0, 142194e2cb23SJakub Kruzik 0, 142294e2cb23SJakub Kruzik 0, 14234222ddf1SHong Zhang MatCreateMPIMatConcatenateSeqMat_MPIDense, 14244222ddf1SHong Zhang /*145*/ 0, 14254222ddf1SHong Zhang 0, 14264222ddf1SHong Zhang 0 1427ba337c44SJed Brown }; 14288965ea79SLois Curfman McInnes 14297087cfbeSBarry Smith PetscErrorCode MatMPIDenseSetPreallocation_MPIDense(Mat mat,PetscScalar *data) 1430a23d5eceSKris Buschelman { 1431637a0070SStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)mat->data; 1432637a0070SStefano Zampini PetscBool iscuda; 1433dfbe8321SBarry Smith PetscErrorCode ierr; 1434a23d5eceSKris Buschelman 1435a23d5eceSKris Buschelman PetscFunctionBegin; 143634ef9618SShri Abhyankar ierr = PetscLayoutSetUp(mat->rmap);CHKERRQ(ierr); 143734ef9618SShri Abhyankar ierr = PetscLayoutSetUp(mat->cmap);CHKERRQ(ierr); 1438637a0070SStefano Zampini if (!a->A) { 1439f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&a->A);CHKERRQ(ierr); 14403bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 1441637a0070SStefano Zampini ierr = MatSetSizes(a->A,mat->rmap->n,mat->cmap->N,mat->rmap->n,mat->cmap->N);CHKERRQ(ierr); 1442637a0070SStefano Zampini } 1443637a0070SStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)mat,MATMPIDENSECUDA,&iscuda);CHKERRQ(ierr); 1444637a0070SStefano Zampini ierr = MatSetType(a->A,iscuda ? MATSEQDENSECUDA : MATSEQDENSE);CHKERRQ(ierr); 1445637a0070SStefano Zampini ierr = MatSeqDenseSetPreallocation(a->A,data);CHKERRQ(ierr); 1446637a0070SStefano Zampini mat->preallocated = PETSC_TRUE; 1447a23d5eceSKris Buschelman PetscFunctionReturn(0); 1448a23d5eceSKris Buschelman } 1449a23d5eceSKris Buschelman 145065b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 1451cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIDense_Elemental(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 14528baccfbdSHong Zhang { 14538ea901baSHong Zhang Mat mat_elemental; 14548ea901baSHong Zhang PetscErrorCode ierr; 145532d7a744SHong Zhang PetscScalar *v; 145632d7a744SHong Zhang PetscInt m=A->rmap->n,N=A->cmap->N,rstart=A->rmap->rstart,i,*rows,*cols; 14578ea901baSHong Zhang 14588baccfbdSHong Zhang PetscFunctionBegin; 1459378336b6SHong Zhang if (reuse == MAT_REUSE_MATRIX) { 1460378336b6SHong Zhang mat_elemental = *newmat; 1461378336b6SHong Zhang ierr = MatZeroEntries(*newmat);CHKERRQ(ierr); 1462378336b6SHong Zhang } else { 1463378336b6SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental);CHKERRQ(ierr); 1464378336b6SHong Zhang ierr = MatSetSizes(mat_elemental,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 1465378336b6SHong Zhang ierr = MatSetType(mat_elemental,MATELEMENTAL);CHKERRQ(ierr); 1466378336b6SHong Zhang ierr = MatSetUp(mat_elemental);CHKERRQ(ierr); 146732d7a744SHong Zhang ierr = MatSetOption(mat_elemental,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 1468378336b6SHong Zhang } 1469378336b6SHong Zhang 147032d7a744SHong Zhang ierr = PetscMalloc2(m,&rows,N,&cols);CHKERRQ(ierr); 147132d7a744SHong Zhang for (i=0; i<N; i++) cols[i] = i; 147232d7a744SHong Zhang for (i=0; i<m; i++) rows[i] = rstart + i; 14738ea901baSHong Zhang 1474637a0070SStefano Zampini /* PETSc-Elemental interface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */ 147532d7a744SHong Zhang ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr); 147632d7a744SHong Zhang ierr = MatSetValues(mat_elemental,m,rows,N,cols,v,ADD_VALUES);CHKERRQ(ierr); 14778ea901baSHong Zhang ierr = MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 14788ea901baSHong Zhang ierr = MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 147932d7a744SHong Zhang ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr); 148032d7a744SHong Zhang ierr = PetscFree2(rows,cols);CHKERRQ(ierr); 14818ea901baSHong Zhang 1482511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 148328be2f97SBarry Smith ierr = MatHeaderReplace(A,&mat_elemental);CHKERRQ(ierr); 14848ea901baSHong Zhang } else { 14858ea901baSHong Zhang *newmat = mat_elemental; 14868ea901baSHong Zhang } 14878baccfbdSHong Zhang PetscFunctionReturn(0); 14888baccfbdSHong Zhang } 148965b80a83SHong Zhang #endif 14908baccfbdSHong Zhang 1491af53bab2SHong Zhang static PetscErrorCode MatDenseGetColumn_MPIDense(Mat A,PetscInt col,PetscScalar **vals) 149286aefd0dSHong Zhang { 149386aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 149486aefd0dSHong Zhang PetscErrorCode ierr; 149586aefd0dSHong Zhang 149686aefd0dSHong Zhang PetscFunctionBegin; 149786aefd0dSHong Zhang ierr = MatDenseGetColumn(mat->A,col,vals);CHKERRQ(ierr); 149886aefd0dSHong Zhang PetscFunctionReturn(0); 149986aefd0dSHong Zhang } 150086aefd0dSHong Zhang 1501af53bab2SHong Zhang static PetscErrorCode MatDenseRestoreColumn_MPIDense(Mat A,PetscScalar **vals) 150286aefd0dSHong Zhang { 150386aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 150486aefd0dSHong Zhang PetscErrorCode ierr; 150586aefd0dSHong Zhang 150686aefd0dSHong Zhang PetscFunctionBegin; 150786aefd0dSHong Zhang ierr = MatDenseRestoreColumn(mat->A,vals);CHKERRQ(ierr); 150886aefd0dSHong Zhang PetscFunctionReturn(0); 150986aefd0dSHong Zhang } 151086aefd0dSHong Zhang 151194e2cb23SJakub Kruzik PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIDense(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 151294e2cb23SJakub Kruzik { 151394e2cb23SJakub Kruzik PetscErrorCode ierr; 151494e2cb23SJakub Kruzik Mat_MPIDense *mat; 151594e2cb23SJakub Kruzik PetscInt m,nloc,N; 151694e2cb23SJakub Kruzik 151794e2cb23SJakub Kruzik PetscFunctionBegin; 151894e2cb23SJakub Kruzik ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr); 151994e2cb23SJakub Kruzik ierr = MatGetLocalSize(inmat,NULL,&nloc);CHKERRQ(ierr); 152094e2cb23SJakub Kruzik if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 152194e2cb23SJakub Kruzik PetscInt sum; 152294e2cb23SJakub Kruzik 152394e2cb23SJakub Kruzik if (n == PETSC_DECIDE) { 152494e2cb23SJakub Kruzik ierr = PetscSplitOwnership(comm,&n,&N);CHKERRQ(ierr); 152594e2cb23SJakub Kruzik } 152694e2cb23SJakub Kruzik /* Check sum(n) = N */ 152794e2cb23SJakub Kruzik ierr = MPIU_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 152894e2cb23SJakub Kruzik if (sum != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns %D != global columns %D",sum,N); 152994e2cb23SJakub Kruzik 153094e2cb23SJakub Kruzik ierr = MatCreateDense(comm,m,n,PETSC_DETERMINE,N,NULL,outmat);CHKERRQ(ierr); 153194e2cb23SJakub Kruzik } 153294e2cb23SJakub Kruzik 153394e2cb23SJakub Kruzik /* numeric phase */ 153494e2cb23SJakub Kruzik mat = (Mat_MPIDense*)(*outmat)->data; 153594e2cb23SJakub Kruzik ierr = MatCopy(inmat,mat->A,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 153694e2cb23SJakub Kruzik ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 153794e2cb23SJakub Kruzik ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 153894e2cb23SJakub Kruzik PetscFunctionReturn(0); 153994e2cb23SJakub Kruzik } 154094e2cb23SJakub Kruzik 1541637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1542637a0070SStefano Zampini PetscErrorCode MatConvert_MPIDenseCUDA_MPIDense(Mat M,MatType type,MatReuse reuse,Mat *newmat) 1543637a0070SStefano Zampini { 1544637a0070SStefano Zampini Mat B; 1545637a0070SStefano Zampini Mat_MPIDense *m; 1546637a0070SStefano Zampini PetscErrorCode ierr; 1547637a0070SStefano Zampini 1548637a0070SStefano Zampini PetscFunctionBegin; 1549637a0070SStefano Zampini if (reuse == MAT_INITIAL_MATRIX) { 1550637a0070SStefano Zampini ierr = MatDuplicate(M,MAT_COPY_VALUES,newmat);CHKERRQ(ierr); 1551637a0070SStefano Zampini } else if (reuse == MAT_REUSE_MATRIX) { 1552637a0070SStefano Zampini ierr = MatCopy(M,*newmat,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 1553637a0070SStefano Zampini } 1554637a0070SStefano Zampini 1555637a0070SStefano Zampini B = *newmat; 1556637a0070SStefano Zampini ierr = MatBindToCPU_MPIDenseCUDA(B,PETSC_TRUE);CHKERRQ(ierr); 1557637a0070SStefano Zampini ierr = PetscFree(B->defaultvectype);CHKERRQ(ierr); 1558637a0070SStefano Zampini ierr = PetscStrallocpy(VECSTANDARD,&B->defaultvectype);CHKERRQ(ierr); 1559637a0070SStefano Zampini ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIDENSE);CHKERRQ(ierr); 1560637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpidensecuda_mpidense_C",NULL);CHKERRQ(ierr); 1561637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaij_mpidensecuda_C",NULL);CHKERRQ(ierr); 1562637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaij_C",NULL);CHKERRQ(ierr); 1563637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArray_C",NULL);CHKERRQ(ierr); 1564637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayRead_C",NULL);CHKERRQ(ierr); 1565637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayWrite_C",NULL);CHKERRQ(ierr); 1566637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArray_C",NULL);CHKERRQ(ierr); 1567637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayRead_C",NULL);CHKERRQ(ierr); 1568637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayWrite_C",NULL);CHKERRQ(ierr); 1569637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAPlaceArray_C",NULL);CHKERRQ(ierr); 1570637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAResetArray_C",NULL);CHKERRQ(ierr); 1571d5ea218eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAReplaceArray_C",NULL);CHKERRQ(ierr); 1572637a0070SStefano Zampini m = (Mat_MPIDense*)(B)->data; 1573637a0070SStefano Zampini if (m->A) { 1574637a0070SStefano Zampini ierr = MatConvert(m->A,MATSEQDENSE,MAT_INPLACE_MATRIX,&m->A);CHKERRQ(ierr); 1575637a0070SStefano Zampini ierr = MatSetUpMultiply_MPIDense(B);CHKERRQ(ierr); 1576637a0070SStefano Zampini } 1577637a0070SStefano Zampini B->ops->bindtocpu = NULL; 1578637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_CPU; 1579637a0070SStefano Zampini PetscFunctionReturn(0); 1580637a0070SStefano Zampini } 1581637a0070SStefano Zampini 1582637a0070SStefano Zampini PetscErrorCode MatConvert_MPIDense_MPIDenseCUDA(Mat M,MatType type,MatReuse reuse,Mat *newmat) 1583637a0070SStefano Zampini { 1584637a0070SStefano Zampini Mat B; 1585637a0070SStefano Zampini Mat_MPIDense *m; 1586637a0070SStefano Zampini PetscErrorCode ierr; 1587637a0070SStefano Zampini 1588637a0070SStefano Zampini PetscFunctionBegin; 1589637a0070SStefano Zampini if (reuse == MAT_INITIAL_MATRIX) { 1590637a0070SStefano Zampini ierr = MatDuplicate(M,MAT_COPY_VALUES,newmat);CHKERRQ(ierr); 1591637a0070SStefano Zampini } else if (reuse == MAT_REUSE_MATRIX) { 1592637a0070SStefano Zampini ierr = MatCopy(M,*newmat,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 1593637a0070SStefano Zampini } 1594637a0070SStefano Zampini 1595637a0070SStefano Zampini B = *newmat; 1596637a0070SStefano Zampini ierr = PetscFree(B->defaultvectype);CHKERRQ(ierr); 1597637a0070SStefano Zampini ierr = PetscStrallocpy(VECCUDA,&B->defaultvectype);CHKERRQ(ierr); 1598637a0070SStefano Zampini ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIDENSECUDA);CHKERRQ(ierr); 1599637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpidensecuda_mpidense_C", MatConvert_MPIDenseCUDA_MPIDense);CHKERRQ(ierr); 1600637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaij_mpidensecuda_C",MatProductSetFromOptions_MPIAIJ_MPIDense);CHKERRQ(ierr); 1601637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaij_C",MatProductSetFromOptions_MPIDense_MPIAIJ);CHKERRQ(ierr); 1602637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArray_C", MatDenseCUDAGetArray_MPIDenseCUDA);CHKERRQ(ierr); 1603637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayRead_C", MatDenseCUDAGetArrayRead_MPIDenseCUDA);CHKERRQ(ierr); 1604637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayWrite_C", MatDenseCUDAGetArrayWrite_MPIDenseCUDA);CHKERRQ(ierr); 1605637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArray_C", MatDenseCUDARestoreArray_MPIDenseCUDA);CHKERRQ(ierr); 1606637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayRead_C", MatDenseCUDARestoreArrayRead_MPIDenseCUDA);CHKERRQ(ierr); 1607637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayWrite_C", MatDenseCUDARestoreArrayWrite_MPIDenseCUDA);CHKERRQ(ierr); 1608637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAPlaceArray_C", MatDenseCUDAPlaceArray_MPIDenseCUDA);CHKERRQ(ierr); 1609637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAResetArray_C", MatDenseCUDAResetArray_MPIDenseCUDA);CHKERRQ(ierr); 1610d5ea218eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAReplaceArray_C", MatDenseCUDAReplaceArray_MPIDenseCUDA);CHKERRQ(ierr); 1611637a0070SStefano Zampini m = (Mat_MPIDense*)(B)->data; 1612637a0070SStefano Zampini if (m->A) { 1613637a0070SStefano Zampini ierr = MatConvert(m->A,MATSEQDENSECUDA,MAT_INPLACE_MATRIX,&m->A);CHKERRQ(ierr); 1614637a0070SStefano Zampini ierr = MatSetUpMultiply_MPIDense(B);CHKERRQ(ierr); 1615637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_BOTH; 1616637a0070SStefano Zampini } else { 1617637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_UNALLOCATED; 1618637a0070SStefano Zampini } 1619637a0070SStefano Zampini ierr = MatBindToCPU_MPIDenseCUDA(B,PETSC_FALSE);CHKERRQ(ierr); 1620637a0070SStefano Zampini 1621637a0070SStefano Zampini B->ops->bindtocpu = MatBindToCPU_MPIDenseCUDA; 1622637a0070SStefano Zampini PetscFunctionReturn(0); 1623637a0070SStefano Zampini } 1624637a0070SStefano Zampini #endif 1625637a0070SStefano Zampini 16266947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVec_MPIDense(Mat A,PetscInt col,Vec *v) 16276947451fSStefano Zampini { 16286947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 16296947451fSStefano Zampini PetscErrorCode ierr; 16306947451fSStefano Zampini PetscInt lda; 16316947451fSStefano Zampini 16326947451fSStefano Zampini PetscFunctionBegin; 16336947451fSStefano Zampini if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first"); 16346947451fSStefano Zampini if (!a->cvec) { 16356947451fSStefano Zampini ierr = VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr); 16366947451fSStefano Zampini } 16376947451fSStefano Zampini a->vecinuse = col + 1; 16386947451fSStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 16396947451fSStefano Zampini ierr = MatDenseGetArray(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 16406947451fSStefano Zampini ierr = VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr); 16416947451fSStefano Zampini *v = a->cvec; 16426947451fSStefano Zampini PetscFunctionReturn(0); 16436947451fSStefano Zampini } 16446947451fSStefano Zampini 16456947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVec_MPIDense(Mat A,PetscInt col,Vec *v) 16466947451fSStefano Zampini { 16476947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 16486947451fSStefano Zampini PetscErrorCode ierr; 16496947451fSStefano Zampini 16506947451fSStefano Zampini PetscFunctionBegin; 16516947451fSStefano Zampini if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec first"); 16526947451fSStefano Zampini if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector"); 16536947451fSStefano Zampini a->vecinuse = 0; 16546947451fSStefano Zampini ierr = MatDenseRestoreArray(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 16556947451fSStefano Zampini ierr = VecResetArray(a->cvec);CHKERRQ(ierr); 16566947451fSStefano Zampini *v = NULL; 16576947451fSStefano Zampini PetscFunctionReturn(0); 16586947451fSStefano Zampini } 16596947451fSStefano Zampini 16606947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecRead_MPIDense(Mat A,PetscInt col,Vec *v) 16616947451fSStefano Zampini { 16626947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 16636947451fSStefano Zampini PetscErrorCode ierr; 16646947451fSStefano Zampini PetscInt lda; 16656947451fSStefano Zampini 16666947451fSStefano Zampini PetscFunctionBegin; 16676947451fSStefano Zampini if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first"); 16686947451fSStefano Zampini if (!a->cvec) { 16696947451fSStefano Zampini ierr = VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr); 16706947451fSStefano Zampini } 16716947451fSStefano Zampini a->vecinuse = col + 1; 16726947451fSStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 16736947451fSStefano Zampini ierr = MatDenseGetArrayRead(a->A,&a->ptrinuse);CHKERRQ(ierr); 16746947451fSStefano Zampini ierr = VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr); 16756947451fSStefano Zampini ierr = VecLockReadPush(a->cvec);CHKERRQ(ierr); 16766947451fSStefano Zampini *v = a->cvec; 16776947451fSStefano Zampini PetscFunctionReturn(0); 16786947451fSStefano Zampini } 16796947451fSStefano Zampini 16806947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecRead_MPIDense(Mat A,PetscInt col,Vec *v) 16816947451fSStefano Zampini { 16826947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 16836947451fSStefano Zampini PetscErrorCode ierr; 16846947451fSStefano Zampini 16856947451fSStefano Zampini PetscFunctionBegin; 16866947451fSStefano Zampini if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec first"); 16876947451fSStefano Zampini if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector"); 16886947451fSStefano Zampini a->vecinuse = 0; 16896947451fSStefano Zampini ierr = MatDenseRestoreArrayRead(a->A,&a->ptrinuse);CHKERRQ(ierr); 16906947451fSStefano Zampini ierr = VecLockReadPop(a->cvec);CHKERRQ(ierr); 16916947451fSStefano Zampini ierr = VecResetArray(a->cvec);CHKERRQ(ierr); 16926947451fSStefano Zampini *v = NULL; 16936947451fSStefano Zampini PetscFunctionReturn(0); 16946947451fSStefano Zampini } 16956947451fSStefano Zampini 16966947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecWrite_MPIDense(Mat A,PetscInt col,Vec *v) 16976947451fSStefano Zampini { 16986947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 16996947451fSStefano Zampini PetscErrorCode ierr; 17006947451fSStefano Zampini PetscInt lda; 17016947451fSStefano Zampini 17026947451fSStefano Zampini PetscFunctionBegin; 17036947451fSStefano Zampini if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec first"); 17046947451fSStefano Zampini if (!a->cvec) { 17056947451fSStefano Zampini ierr = VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr); 17066947451fSStefano Zampini } 17076947451fSStefano Zampini a->vecinuse = col + 1; 17086947451fSStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 17096947451fSStefano Zampini ierr = MatDenseGetArrayWrite(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 17106947451fSStefano Zampini ierr = VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr); 17116947451fSStefano Zampini *v = a->cvec; 17126947451fSStefano Zampini PetscFunctionReturn(0); 17136947451fSStefano Zampini } 17146947451fSStefano Zampini 17156947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDense(Mat A,PetscInt col,Vec *v) 17166947451fSStefano Zampini { 17176947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17186947451fSStefano Zampini PetscErrorCode ierr; 17196947451fSStefano Zampini 17206947451fSStefano Zampini PetscFunctionBegin; 17216947451fSStefano Zampini if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec first"); 17226947451fSStefano Zampini if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector"); 17236947451fSStefano Zampini a->vecinuse = 0; 17246947451fSStefano Zampini ierr = MatDenseRestoreArrayWrite(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 17256947451fSStefano Zampini ierr = VecResetArray(a->cvec);CHKERRQ(ierr); 17266947451fSStefano Zampini *v = NULL; 17276947451fSStefano Zampini PetscFunctionReturn(0); 17286947451fSStefano Zampini } 17296947451fSStefano Zampini 17308cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIDense(Mat mat) 1731273d9f13SBarry Smith { 1732273d9f13SBarry Smith Mat_MPIDense *a; 1733dfbe8321SBarry Smith PetscErrorCode ierr; 1734273d9f13SBarry Smith 1735273d9f13SBarry Smith PetscFunctionBegin; 1736b00a9115SJed Brown ierr = PetscNewLog(mat,&a);CHKERRQ(ierr); 1737b0a32e0cSBarry Smith mat->data = (void*)a; 1738273d9f13SBarry Smith ierr = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1739273d9f13SBarry Smith 1740273d9f13SBarry Smith mat->insertmode = NOT_SET_VALUES; 1741ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&a->rank);CHKERRQ(ierr); 1742ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&a->size);CHKERRQ(ierr); 1743273d9f13SBarry Smith 1744273d9f13SBarry Smith /* build cache for off array entries formed */ 1745273d9f13SBarry Smith a->donotstash = PETSC_FALSE; 17462205254eSKarl Rupp 1747ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)mat),1,&mat->stash);CHKERRQ(ierr); 1748273d9f13SBarry Smith 1749273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 1750273d9f13SBarry Smith a->lvec = 0; 1751273d9f13SBarry Smith a->Mvctx = 0; 1752273d9f13SBarry Smith a->roworiented = PETSC_TRUE; 1753273d9f13SBarry Smith 175449a6ff4bSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",MatDenseGetLDA_MPIDense);CHKERRQ(ierr); 1755bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",MatDenseGetArray_MPIDense);CHKERRQ(ierr); 17568572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",MatDenseRestoreArray_MPIDense);CHKERRQ(ierr); 17578572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",MatDenseGetArrayRead_MPIDense);CHKERRQ(ierr); 17588572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",MatDenseRestoreArrayRead_MPIDense);CHKERRQ(ierr); 17596947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayWrite_C",MatDenseGetArrayWrite_MPIDense);CHKERRQ(ierr); 17606947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayWrite_C",MatDenseRestoreArrayWrite_MPIDense);CHKERRQ(ierr); 1761d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",MatDensePlaceArray_MPIDense);CHKERRQ(ierr); 1762d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",MatDenseResetArray_MPIDense);CHKERRQ(ierr); 1763d5ea218eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseReplaceArray_C",MatDenseReplaceArray_MPIDense);CHKERRQ(ierr); 17646947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDense);CHKERRQ(ierr); 17656947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDense);CHKERRQ(ierr); 17666947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDense);CHKERRQ(ierr); 17676947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDense);CHKERRQ(ierr); 17686947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDense);CHKERRQ(ierr); 17696947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDense);CHKERRQ(ierr); 17708baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 17718baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",MatConvert_MPIDense_Elemental);CHKERRQ(ierr); 17728baccfbdSHong Zhang #endif 1773637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1774637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_mpidensecuda_C",MatConvert_MPIDense_MPIDenseCUDA);CHKERRQ(ierr); 1775637a0070SStefano Zampini #endif 1776bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",MatMPIDenseSetPreallocation_MPIDense);CHKERRQ(ierr); 17774222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaij_mpidense_C",MatProductSetFromOptions_MPIAIJ_MPIDense);CHKERRQ(ierr); 17784222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaij_C",MatProductSetFromOptions_MPIDense_MPIAIJ);CHKERRQ(ierr); 1779bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C",MatMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr); 1780bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C",MatMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr); 178152c5f739Sprj- ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_nest_mpidense_C",MatMatMultSymbolic_Nest_Dense);CHKERRQ(ierr); 178252c5f739Sprj- ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_nest_mpidense_C",MatMatMultNumeric_Nest_Dense);CHKERRQ(ierr); 17838949adfdSHong Zhang 17848949adfdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultSymbolic_mpiaij_mpidense_C",MatTransposeMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr); 17858949adfdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultNumeric_mpiaij_mpidense_C",MatTransposeMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr); 1786af53bab2SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",MatDenseGetColumn_MPIDense);CHKERRQ(ierr); 1787af53bab2SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",MatDenseRestoreColumn_MPIDense);CHKERRQ(ierr); 178838aed534SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)mat,MATMPIDENSE);CHKERRQ(ierr); 1789273d9f13SBarry Smith PetscFunctionReturn(0); 1790273d9f13SBarry Smith } 1791273d9f13SBarry Smith 1792209238afSKris Buschelman /*MC 1793637a0070SStefano Zampini MATMPIDENSECUDA - MATMPIDENSECUDA = "mpidensecuda" - A matrix type to be used for distributed dense matrices on GPUs. 1794637a0070SStefano Zampini 1795637a0070SStefano Zampini Options Database Keys: 1796637a0070SStefano Zampini . -mat_type mpidensecuda - sets the matrix type to "mpidensecuda" during a call to MatSetFromOptions() 1797637a0070SStefano Zampini 1798637a0070SStefano Zampini Level: beginner 1799637a0070SStefano Zampini 1800637a0070SStefano Zampini .seealso: 1801637a0070SStefano Zampini 1802637a0070SStefano Zampini M*/ 1803637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1804637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreate_MPIDenseCUDA(Mat B) 1805637a0070SStefano Zampini { 1806637a0070SStefano Zampini PetscErrorCode ierr; 1807637a0070SStefano Zampini 1808637a0070SStefano Zampini PetscFunctionBegin; 1809637a0070SStefano Zampini ierr = MatCreate_MPIDense(B);CHKERRQ(ierr); 1810637a0070SStefano Zampini ierr = MatConvert_MPIDense_MPIDenseCUDA(B,MATMPIDENSECUDA,MAT_INPLACE_MATRIX,&B);CHKERRQ(ierr); 1811637a0070SStefano Zampini PetscFunctionReturn(0); 1812637a0070SStefano Zampini } 1813637a0070SStefano Zampini #endif 1814637a0070SStefano Zampini 1815637a0070SStefano Zampini /*MC 1816002d173eSKris Buschelman MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices. 1817209238afSKris Buschelman 1818209238afSKris Buschelman This matrix type is identical to MATSEQDENSE when constructed with a single process communicator, 1819209238afSKris Buschelman and MATMPIDENSE otherwise. 1820209238afSKris Buschelman 1821209238afSKris Buschelman Options Database Keys: 1822209238afSKris Buschelman . -mat_type dense - sets the matrix type to "dense" during a call to MatSetFromOptions() 1823209238afSKris Buschelman 1824209238afSKris Buschelman Level: beginner 1825209238afSKris Buschelman 182601b82886SBarry Smith 18276947451fSStefano Zampini .seealso: MATSEQDENSE,MATMPIDENSE,MATDENSECUDA 18286947451fSStefano Zampini M*/ 18296947451fSStefano Zampini 18306947451fSStefano Zampini /*MC 18316947451fSStefano Zampini MATDENSECUDA - MATDENSECUDA = "densecuda" - A matrix type to be used for dense matrices on GPUs. 18326947451fSStefano Zampini 18336947451fSStefano Zampini This matrix type is identical to MATSEQDENSECUDA when constructed with a single process communicator, 18346947451fSStefano Zampini and MATMPIDENSECUDA otherwise. 18356947451fSStefano Zampini 18366947451fSStefano Zampini Options Database Keys: 18376947451fSStefano Zampini . -mat_type densecuda - sets the matrix type to "densecuda" during a call to MatSetFromOptions() 18386947451fSStefano Zampini 18396947451fSStefano Zampini Level: beginner 18406947451fSStefano Zampini 18416947451fSStefano Zampini .seealso: MATSEQDENSECUDA,MATMPIDENSECUDA,MATDENSE 1842209238afSKris Buschelman M*/ 1843209238afSKris Buschelman 1844273d9f13SBarry Smith /*@C 1845273d9f13SBarry Smith MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries 1846273d9f13SBarry Smith 1847273d9f13SBarry Smith Not collective 1848273d9f13SBarry Smith 1849273d9f13SBarry Smith Input Parameters: 18501c4f3114SJed Brown . B - the matrix 18510298fd71SBarry Smith - data - optional location of matrix data. Set data=NULL for PETSc 1852273d9f13SBarry Smith to control all matrix memory allocation. 1853273d9f13SBarry Smith 1854273d9f13SBarry Smith Notes: 1855273d9f13SBarry Smith The dense format is fully compatible with standard Fortran 77 1856273d9f13SBarry Smith storage by columns. 1857273d9f13SBarry Smith 1858273d9f13SBarry Smith The data input variable is intended primarily for Fortran programmers 1859273d9f13SBarry Smith who wish to allocate their own matrix memory space. Most users should 18600298fd71SBarry Smith set data=NULL. 1861273d9f13SBarry Smith 1862273d9f13SBarry Smith Level: intermediate 1863273d9f13SBarry Smith 1864273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 1865273d9f13SBarry Smith @*/ 18661c4f3114SJed Brown PetscErrorCode MatMPIDenseSetPreallocation(Mat B,PetscScalar *data) 1867273d9f13SBarry Smith { 18684ac538c5SBarry Smith PetscErrorCode ierr; 1869273d9f13SBarry Smith 1870273d9f13SBarry Smith PetscFunctionBegin; 1871d5ea218eSStefano Zampini PetscValidHeaderSpecific(B,MAT_CLASSID,1); 18721c4f3114SJed Brown ierr = PetscTryMethod(B,"MatMPIDenseSetPreallocation_C",(Mat,PetscScalar*),(B,data));CHKERRQ(ierr); 1873273d9f13SBarry Smith PetscFunctionReturn(0); 1874273d9f13SBarry Smith } 1875273d9f13SBarry Smith 1876d3042a70SBarry Smith /*@ 1877637a0070SStefano Zampini MatDensePlaceArray - Allows one to replace the array in a dense matrix with an 1878d3042a70SBarry Smith array provided by the user. This is useful to avoid copying an array 1879d3042a70SBarry Smith into a matrix 1880d3042a70SBarry Smith 1881d3042a70SBarry Smith Not Collective 1882d3042a70SBarry Smith 1883d3042a70SBarry Smith Input Parameters: 1884d3042a70SBarry Smith + mat - the matrix 1885d3042a70SBarry Smith - array - the array in column major order 1886d3042a70SBarry Smith 1887d3042a70SBarry Smith Notes: 1888d3042a70SBarry Smith You can return to the original array with a call to MatDenseResetArray(). The user is responsible for freeing this array; it will not be 1889d3042a70SBarry Smith freed when the matrix is destroyed. 1890d3042a70SBarry Smith 1891d3042a70SBarry Smith Level: developer 1892d3042a70SBarry Smith 1893d3042a70SBarry Smith .seealso: MatDenseGetArray(), MatDenseResetArray(), VecPlaceArray(), VecGetArray(), VecRestoreArray(), VecReplaceArray(), VecResetArray() 1894d3042a70SBarry Smith 1895d3042a70SBarry Smith @*/ 1896637a0070SStefano Zampini PetscErrorCode MatDensePlaceArray(Mat mat,const PetscScalar *array) 1897d3042a70SBarry Smith { 1898d3042a70SBarry Smith PetscErrorCode ierr; 1899637a0070SStefano Zampini 1900d3042a70SBarry Smith PetscFunctionBegin; 1901d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 1902d3042a70SBarry Smith ierr = PetscUseMethod(mat,"MatDensePlaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr); 1903d3042a70SBarry Smith ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 1904637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1905637a0070SStefano Zampini mat->offloadmask = PETSC_OFFLOAD_CPU; 1906637a0070SStefano Zampini #endif 1907d3042a70SBarry Smith PetscFunctionReturn(0); 1908d3042a70SBarry Smith } 1909d3042a70SBarry Smith 1910d3042a70SBarry Smith /*@ 1911d3042a70SBarry Smith MatDenseResetArray - Resets the matrix array to that it previously had before the call to MatDensePlaceArray() 1912d3042a70SBarry Smith 1913d3042a70SBarry Smith Not Collective 1914d3042a70SBarry Smith 1915d3042a70SBarry Smith Input Parameters: 1916d3042a70SBarry Smith . mat - the matrix 1917d3042a70SBarry Smith 1918d3042a70SBarry Smith Notes: 1919d3042a70SBarry Smith You can only call this after a call to MatDensePlaceArray() 1920d3042a70SBarry Smith 1921d3042a70SBarry Smith Level: developer 1922d3042a70SBarry Smith 1923d3042a70SBarry Smith .seealso: MatDenseGetArray(), MatDensePlaceArray(), VecPlaceArray(), VecGetArray(), VecRestoreArray(), VecReplaceArray(), VecResetArray() 1924d3042a70SBarry Smith 1925d3042a70SBarry Smith @*/ 1926d3042a70SBarry Smith PetscErrorCode MatDenseResetArray(Mat mat) 1927d3042a70SBarry Smith { 1928d3042a70SBarry Smith PetscErrorCode ierr; 1929637a0070SStefano Zampini 1930d3042a70SBarry Smith PetscFunctionBegin; 1931d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 1932d3042a70SBarry Smith ierr = PetscUseMethod(mat,"MatDenseResetArray_C",(Mat),(mat));CHKERRQ(ierr); 1933d3042a70SBarry Smith ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 1934d3042a70SBarry Smith PetscFunctionReturn(0); 1935d3042a70SBarry Smith } 1936d3042a70SBarry Smith 1937d5ea218eSStefano Zampini /*@ 1938d5ea218eSStefano Zampini MatDenseReplaceArray - Allows one to replace the array in a dense matrix with an 1939d5ea218eSStefano Zampini array provided by the user. This is useful to avoid copying an array 1940d5ea218eSStefano Zampini into a matrix 1941d5ea218eSStefano Zampini 1942d5ea218eSStefano Zampini Not Collective 1943d5ea218eSStefano Zampini 1944d5ea218eSStefano Zampini Input Parameters: 1945d5ea218eSStefano Zampini + mat - the matrix 1946d5ea218eSStefano Zampini - array - the array in column major order 1947d5ea218eSStefano Zampini 1948d5ea218eSStefano Zampini Notes: 1949d5ea218eSStefano Zampini The memory passed in MUST be obtained with PetscMalloc() and CANNOT be 1950d5ea218eSStefano Zampini freed by the user. It will be freed when the matrix is destroyed. 1951d5ea218eSStefano Zampini 1952d5ea218eSStefano Zampini Level: developer 1953d5ea218eSStefano Zampini 1954d5ea218eSStefano Zampini .seealso: MatDenseGetArray(), VecReplaceArray() 1955d5ea218eSStefano Zampini @*/ 1956d5ea218eSStefano Zampini PetscErrorCode MatDenseReplaceArray(Mat mat,const PetscScalar *array) 1957d5ea218eSStefano Zampini { 1958d5ea218eSStefano Zampini PetscErrorCode ierr; 1959d5ea218eSStefano Zampini 1960d5ea218eSStefano Zampini PetscFunctionBegin; 1961d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 1962d5ea218eSStefano Zampini ierr = PetscUseMethod(mat,"MatDenseReplaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr); 1963d5ea218eSStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 1964d5ea218eSStefano Zampini #if defined(PETSC_HAVE_CUDA) 1965d5ea218eSStefano Zampini mat->offloadmask = PETSC_OFFLOAD_CPU; 1966d5ea218eSStefano Zampini #endif 1967d5ea218eSStefano Zampini PetscFunctionReturn(0); 1968d5ea218eSStefano Zampini } 1969d5ea218eSStefano Zampini 1970637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 19718965ea79SLois Curfman McInnes /*@C 1972637a0070SStefano Zampini MatDenseCUDAPlaceArray - Allows one to replace the GPU array in a dense matrix with an 1973637a0070SStefano Zampini array provided by the user. This is useful to avoid copying an array 1974637a0070SStefano Zampini into a matrix 1975637a0070SStefano Zampini 1976637a0070SStefano Zampini Not Collective 1977637a0070SStefano Zampini 1978637a0070SStefano Zampini Input Parameters: 1979637a0070SStefano Zampini + mat - the matrix 1980637a0070SStefano Zampini - array - the array in column major order 1981637a0070SStefano Zampini 1982637a0070SStefano Zampini Notes: 1983637a0070SStefano Zampini You can return to the original array with a call to MatDenseCUDAResetArray(). The user is responsible for freeing this array; it will not be 1984637a0070SStefano Zampini freed when the matrix is destroyed. The array must have been allocated with cudaMalloc(). 1985637a0070SStefano Zampini 1986637a0070SStefano Zampini Level: developer 1987637a0070SStefano Zampini 1988637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDAResetArray() 1989637a0070SStefano Zampini @*/ 1990637a0070SStefano Zampini PetscErrorCode MatDenseCUDAPlaceArray(Mat mat,const PetscScalar *array) 1991637a0070SStefano Zampini { 1992637a0070SStefano Zampini PetscErrorCode ierr; 1993637a0070SStefano Zampini 1994637a0070SStefano Zampini PetscFunctionBegin; 1995d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 1996637a0070SStefano Zampini ierr = PetscUseMethod(mat,"MatDenseCUDAPlaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr); 1997637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 1998637a0070SStefano Zampini mat->offloadmask = PETSC_OFFLOAD_GPU; 1999637a0070SStefano Zampini PetscFunctionReturn(0); 2000637a0070SStefano Zampini } 2001637a0070SStefano Zampini 2002637a0070SStefano Zampini /*@C 2003637a0070SStefano Zampini MatDenseCUDAResetArray - Resets the matrix array to that it previously had before the call to MatDenseCUDAPlaceArray() 2004637a0070SStefano Zampini 2005637a0070SStefano Zampini Not Collective 2006637a0070SStefano Zampini 2007637a0070SStefano Zampini Input Parameters: 2008637a0070SStefano Zampini . mat - the matrix 2009637a0070SStefano Zampini 2010637a0070SStefano Zampini Notes: 2011637a0070SStefano Zampini You can only call this after a call to MatDenseCUDAPlaceArray() 2012637a0070SStefano Zampini 2013637a0070SStefano Zampini Level: developer 2014637a0070SStefano Zampini 2015637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDAPlaceArray() 2016637a0070SStefano Zampini 2017637a0070SStefano Zampini @*/ 2018637a0070SStefano Zampini PetscErrorCode MatDenseCUDAResetArray(Mat mat) 2019637a0070SStefano Zampini { 2020637a0070SStefano Zampini PetscErrorCode ierr; 2021637a0070SStefano Zampini 2022637a0070SStefano Zampini PetscFunctionBegin; 2023d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2024637a0070SStefano Zampini ierr = PetscUseMethod(mat,"MatDenseCUDAResetArray_C",(Mat),(mat));CHKERRQ(ierr); 2025637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 2026637a0070SStefano Zampini PetscFunctionReturn(0); 2027637a0070SStefano Zampini } 2028637a0070SStefano Zampini 2029637a0070SStefano Zampini /*@C 2030d5ea218eSStefano Zampini MatDenseCUDAReplaceArray - Allows one to replace the GPU array in a dense matrix with an 2031d5ea218eSStefano Zampini array provided by the user. This is useful to avoid copying an array 2032d5ea218eSStefano Zampini into a matrix 2033d5ea218eSStefano Zampini 2034d5ea218eSStefano Zampini Not Collective 2035d5ea218eSStefano Zampini 2036d5ea218eSStefano Zampini Input Parameters: 2037d5ea218eSStefano Zampini + mat - the matrix 2038d5ea218eSStefano Zampini - array - the array in column major order 2039d5ea218eSStefano Zampini 2040d5ea218eSStefano Zampini Notes: 2041d5ea218eSStefano Zampini This permanently replaces the GPU array and frees the memory associated with the old GPU array. 2042d5ea218eSStefano Zampini The memory passed in CANNOT be freed by the user. It will be freed 2043d5ea218eSStefano Zampini when the matrix is destroyed. The array should respect the matrix leading dimension. 2044d5ea218eSStefano Zampini 2045d5ea218eSStefano Zampini Level: developer 2046d5ea218eSStefano Zampini 2047d5ea218eSStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDAPlaceArray(), MatDenseCUDAResetArray() 2048d5ea218eSStefano Zampini @*/ 2049d5ea218eSStefano Zampini PetscErrorCode MatDenseCUDAReplaceArray(Mat mat,const PetscScalar *array) 2050d5ea218eSStefano Zampini { 2051d5ea218eSStefano Zampini PetscErrorCode ierr; 2052d5ea218eSStefano Zampini 2053d5ea218eSStefano Zampini PetscFunctionBegin; 2054d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2055d5ea218eSStefano Zampini ierr = PetscUseMethod(mat,"MatDenseCUDAReplaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr); 2056d5ea218eSStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 2057d5ea218eSStefano Zampini mat->offloadmask = PETSC_OFFLOAD_GPU; 2058d5ea218eSStefano Zampini PetscFunctionReturn(0); 2059d5ea218eSStefano Zampini } 2060d5ea218eSStefano Zampini 2061d5ea218eSStefano Zampini /*@C 2062637a0070SStefano Zampini MatDenseCUDAGetArrayWrite - Provides write access to the CUDA buffer inside a dense matrix. 2063637a0070SStefano Zampini 2064637a0070SStefano Zampini Not Collective 2065637a0070SStefano Zampini 2066637a0070SStefano Zampini Input Parameters: 2067637a0070SStefano Zampini . A - the matrix 2068637a0070SStefano Zampini 2069637a0070SStefano Zampini Output Parameters 2070637a0070SStefano Zampini . array - the GPU array in column major order 2071637a0070SStefano Zampini 2072637a0070SStefano Zampini Notes: 2073637a0070SStefano Zampini The data on the GPU may not be updated due to operations done on the CPU. If you need updated data, use MatDenseCUDAGetArray(). The array must be restored with MatDenseCUDARestoreArrayWrite() when no longer needed. 2074637a0070SStefano Zampini 2075637a0070SStefano Zampini Level: developer 2076637a0070SStefano Zampini 2077637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayRead(), MatDenseCUDARestoreArrayRead() 2078637a0070SStefano Zampini @*/ 2079637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArrayWrite(Mat A, PetscScalar **a) 2080637a0070SStefano Zampini { 2081637a0070SStefano Zampini PetscErrorCode ierr; 2082637a0070SStefano Zampini 2083637a0070SStefano Zampini PetscFunctionBegin; 2084d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2085637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDAGetArrayWrite_C",(Mat,PetscScalar**),(A,a));CHKERRQ(ierr); 2086637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr); 2087637a0070SStefano Zampini PetscFunctionReturn(0); 2088637a0070SStefano Zampini } 2089637a0070SStefano Zampini 2090637a0070SStefano Zampini /*@C 2091637a0070SStefano Zampini MatDenseCUDARestoreArrayWrite - Restore write access to the CUDA buffer inside a dense matrix previously obtained with MatDenseCUDAGetArrayWrite(). 2092637a0070SStefano Zampini 2093637a0070SStefano Zampini Not Collective 2094637a0070SStefano Zampini 2095637a0070SStefano Zampini Input Parameters: 2096637a0070SStefano Zampini + A - the matrix 2097637a0070SStefano Zampini - array - the GPU array in column major order 2098637a0070SStefano Zampini 2099637a0070SStefano Zampini Notes: 2100637a0070SStefano Zampini 2101637a0070SStefano Zampini Level: developer 2102637a0070SStefano Zampini 2103637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead(), MatDenseCUDAGetArrayRead() 2104637a0070SStefano Zampini @*/ 2105637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArrayWrite(Mat A, PetscScalar **a) 2106637a0070SStefano Zampini { 2107637a0070SStefano Zampini PetscErrorCode ierr; 2108637a0070SStefano Zampini 2109637a0070SStefano Zampini PetscFunctionBegin; 2110d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2111637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDARestoreArrayWrite_C",(Mat,PetscScalar**),(A,a));CHKERRQ(ierr); 2112637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr); 2113637a0070SStefano Zampini A->offloadmask = PETSC_OFFLOAD_GPU; 2114637a0070SStefano Zampini PetscFunctionReturn(0); 2115637a0070SStefano Zampini } 2116637a0070SStefano Zampini 2117637a0070SStefano Zampini /*@C 2118637a0070SStefano Zampini MatDenseCUDAGetArrayRead - Provides read-only access to the CUDA buffer inside a dense matrix. The array must be restored with MatDenseCUDARestoreArrayRead() when no longer needed. 2119637a0070SStefano Zampini 2120637a0070SStefano Zampini Not Collective 2121637a0070SStefano Zampini 2122637a0070SStefano Zampini Input Parameters: 2123637a0070SStefano Zampini . A - the matrix 2124637a0070SStefano Zampini 2125637a0070SStefano Zampini Output Parameters 2126637a0070SStefano Zampini . array - the GPU array in column major order 2127637a0070SStefano Zampini 2128637a0070SStefano Zampini Notes: 2129637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). 2130637a0070SStefano Zampini 2131637a0070SStefano Zampini Level: developer 2132637a0070SStefano Zampini 2133637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead() 2134637a0070SStefano Zampini @*/ 2135637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArrayRead(Mat A, const PetscScalar **a) 2136637a0070SStefano Zampini { 2137637a0070SStefano Zampini PetscErrorCode ierr; 2138637a0070SStefano Zampini 2139637a0070SStefano Zampini PetscFunctionBegin; 2140d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2141637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDAGetArrayRead_C",(Mat,const PetscScalar**),(A,a));CHKERRQ(ierr); 2142637a0070SStefano Zampini PetscFunctionReturn(0); 2143637a0070SStefano Zampini } 2144637a0070SStefano Zampini 2145637a0070SStefano Zampini /*@C 2146637a0070SStefano Zampini MatDenseCUDARestoreArrayRead - Restore read-only access to the CUDA buffer inside a dense matrix previously obtained with a call to MatDenseCUDAGetArrayRead(). 2147637a0070SStefano Zampini 2148637a0070SStefano Zampini Not Collective 2149637a0070SStefano Zampini 2150637a0070SStefano Zampini Input Parameters: 2151637a0070SStefano Zampini + A - the matrix 2152637a0070SStefano Zampini - array - the GPU array in column major order 2153637a0070SStefano Zampini 2154637a0070SStefano Zampini Notes: 2155637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). 2156637a0070SStefano Zampini 2157637a0070SStefano Zampini Level: developer 2158637a0070SStefano Zampini 2159637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDAGetArrayRead() 2160637a0070SStefano Zampini @*/ 2161637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArrayRead(Mat A, const PetscScalar **a) 2162637a0070SStefano Zampini { 2163637a0070SStefano Zampini PetscErrorCode ierr; 2164637a0070SStefano Zampini 2165637a0070SStefano Zampini PetscFunctionBegin; 2166637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDARestoreArrayRead_C",(Mat,const PetscScalar**),(A,a));CHKERRQ(ierr); 2167637a0070SStefano Zampini PetscFunctionReturn(0); 2168637a0070SStefano Zampini } 2169637a0070SStefano Zampini 2170637a0070SStefano Zampini /*@C 2171637a0070SStefano Zampini MatDenseCUDAGetArray - Provides access to the CUDA buffer inside a dense matrix. The array must be restored with MatDenseCUDARestoreArray() when no longer needed. 2172637a0070SStefano Zampini 2173637a0070SStefano Zampini Not Collective 2174637a0070SStefano Zampini 2175637a0070SStefano Zampini Input Parameters: 2176637a0070SStefano Zampini . A - the matrix 2177637a0070SStefano Zampini 2178637a0070SStefano Zampini Output Parameters 2179637a0070SStefano Zampini . array - the GPU array in column major order 2180637a0070SStefano Zampini 2181637a0070SStefano Zampini Notes: 2182637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). For read-only access, use MatDenseCUDAGetArrayRead(). 2183637a0070SStefano Zampini 2184637a0070SStefano Zampini Level: developer 2185637a0070SStefano Zampini 2186637a0070SStefano Zampini .seealso: MatDenseCUDAGetArrayRead(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead() 2187637a0070SStefano Zampini @*/ 2188637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArray(Mat A, PetscScalar **a) 2189637a0070SStefano Zampini { 2190637a0070SStefano Zampini PetscErrorCode ierr; 2191637a0070SStefano Zampini 2192637a0070SStefano Zampini PetscFunctionBegin; 2193d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2194637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDAGetArray_C",(Mat,PetscScalar**),(A,a));CHKERRQ(ierr); 2195637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr); 2196637a0070SStefano Zampini PetscFunctionReturn(0); 2197637a0070SStefano Zampini } 2198637a0070SStefano Zampini 2199637a0070SStefano Zampini /*@C 2200637a0070SStefano Zampini MatDenseCUDARestoreArray - Restore access to the CUDA buffer inside a dense matrix previously obtained with MatDenseCUDAGetArray(). 2201637a0070SStefano Zampini 2202637a0070SStefano Zampini Not Collective 2203637a0070SStefano Zampini 2204637a0070SStefano Zampini Input Parameters: 2205637a0070SStefano Zampini + A - the matrix 2206637a0070SStefano Zampini - array - the GPU array in column major order 2207637a0070SStefano Zampini 2208637a0070SStefano Zampini Notes: 2209637a0070SStefano Zampini 2210637a0070SStefano Zampini Level: developer 2211637a0070SStefano Zampini 2212637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead(), MatDenseCUDAGetArrayRead() 2213637a0070SStefano Zampini @*/ 2214637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArray(Mat A, PetscScalar **a) 2215637a0070SStefano Zampini { 2216637a0070SStefano Zampini PetscErrorCode ierr; 2217637a0070SStefano Zampini 2218637a0070SStefano Zampini PetscFunctionBegin; 2219d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2220637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDARestoreArray_C",(Mat,PetscScalar**),(A,a));CHKERRQ(ierr); 2221637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr); 2222637a0070SStefano Zampini A->offloadmask = PETSC_OFFLOAD_GPU; 2223637a0070SStefano Zampini PetscFunctionReturn(0); 2224637a0070SStefano Zampini } 2225637a0070SStefano Zampini #endif 2226637a0070SStefano Zampini 2227637a0070SStefano Zampini /*@C 2228637a0070SStefano Zampini MatCreateDense - Creates a matrix in dense format. 22298965ea79SLois Curfman McInnes 2230d083f849SBarry Smith Collective 2231db81eaa0SLois Curfman McInnes 22328965ea79SLois Curfman McInnes Input Parameters: 2233db81eaa0SLois Curfman McInnes + comm - MPI communicator 22348965ea79SLois Curfman McInnes . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2235db81eaa0SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 22368965ea79SLois Curfman McInnes . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 2237db81eaa0SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 22386cfe35ddSJose E. Roman - data - optional location of matrix data. Set data=NULL (PETSC_NULL_SCALAR for Fortran users) for PETSc 2239dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 22408965ea79SLois Curfman McInnes 22418965ea79SLois Curfman McInnes Output Parameter: 2242477f1c0bSLois Curfman McInnes . A - the matrix 22438965ea79SLois Curfman McInnes 2244b259b22eSLois Curfman McInnes Notes: 224539ddd567SLois Curfman McInnes The dense format is fully compatible with standard Fortran 77 224639ddd567SLois Curfman McInnes storage by columns. 22478965ea79SLois Curfman McInnes 224818f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 224918f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 22506cfe35ddSJose E. Roman set data=NULL (PETSC_NULL_SCALAR for Fortran users). 225118f449edSLois Curfman McInnes 22528965ea79SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 22538965ea79SLois Curfman McInnes (possibly both). 22548965ea79SLois Curfman McInnes 2255027ccd11SLois Curfman McInnes Level: intermediate 2256027ccd11SLois Curfman McInnes 225739ddd567SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 22588965ea79SLois Curfman McInnes @*/ 225969b1f4b7SBarry Smith PetscErrorCode MatCreateDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 22608965ea79SLois Curfman McInnes { 22616849ba73SBarry Smith PetscErrorCode ierr; 226213f74950SBarry Smith PetscMPIInt size; 22638965ea79SLois Curfman McInnes 22643a40ed3dSBarry Smith PetscFunctionBegin; 2265f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 22668491ab44SLisandro Dalcin PetscValidLogicalCollectiveBool(*A,!!data,6); 2267f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2268273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2269273d9f13SBarry Smith if (size > 1) { 2270273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIDENSE);CHKERRQ(ierr); 2271273d9f13SBarry Smith ierr = MatMPIDenseSetPreallocation(*A,data);CHKERRQ(ierr); 22726cfe35ddSJose E. Roman if (data) { /* user provided data array, so no need to assemble */ 22736cfe35ddSJose E. Roman ierr = MatSetUpMultiply_MPIDense(*A);CHKERRQ(ierr); 22746cfe35ddSJose E. Roman (*A)->assembled = PETSC_TRUE; 22756cfe35ddSJose E. Roman } 2276273d9f13SBarry Smith } else { 2277273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr); 2278273d9f13SBarry Smith ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr); 22798c469469SLois Curfman McInnes } 22803a40ed3dSBarry Smith PetscFunctionReturn(0); 22818965ea79SLois Curfman McInnes } 22828965ea79SLois Curfman McInnes 2283637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 2284637a0070SStefano Zampini /*@C 2285637a0070SStefano Zampini MatCreateDenseCUDA - Creates a matrix in dense format using CUDA. 2286637a0070SStefano Zampini 2287637a0070SStefano Zampini Collective 2288637a0070SStefano Zampini 2289637a0070SStefano Zampini Input Parameters: 2290637a0070SStefano Zampini + comm - MPI communicator 2291637a0070SStefano Zampini . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2292637a0070SStefano Zampini . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 2293637a0070SStefano Zampini . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 2294637a0070SStefano Zampini . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 2295637a0070SStefano Zampini - data - optional location of GPU matrix data. Set data=NULL for PETSc 2296637a0070SStefano Zampini to control matrix memory allocation. 2297637a0070SStefano Zampini 2298637a0070SStefano Zampini Output Parameter: 2299637a0070SStefano Zampini . A - the matrix 2300637a0070SStefano Zampini 2301637a0070SStefano Zampini Notes: 2302637a0070SStefano Zampini 2303637a0070SStefano Zampini Level: intermediate 2304637a0070SStefano Zampini 2305637a0070SStefano Zampini .seealso: MatCreate(), MatCreateDense() 2306637a0070SStefano Zampini @*/ 2307637a0070SStefano Zampini PetscErrorCode MatCreateDenseCUDA(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 2308637a0070SStefano Zampini { 2309637a0070SStefano Zampini PetscErrorCode ierr; 2310637a0070SStefano Zampini PetscMPIInt size; 2311637a0070SStefano Zampini 2312637a0070SStefano Zampini PetscFunctionBegin; 2313637a0070SStefano Zampini ierr = MatCreate(comm,A);CHKERRQ(ierr); 2314637a0070SStefano Zampini PetscValidLogicalCollectiveBool(*A,!!data,6); 2315637a0070SStefano Zampini ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2316637a0070SStefano Zampini ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2317637a0070SStefano Zampini if (size > 1) { 2318637a0070SStefano Zampini ierr = MatSetType(*A,MATMPIDENSECUDA);CHKERRQ(ierr); 2319637a0070SStefano Zampini ierr = MatMPIDenseCUDASetPreallocation(*A,data);CHKERRQ(ierr); 2320637a0070SStefano Zampini if (data) { /* user provided data array, so no need to assemble */ 2321637a0070SStefano Zampini ierr = MatSetUpMultiply_MPIDense(*A);CHKERRQ(ierr); 2322637a0070SStefano Zampini (*A)->assembled = PETSC_TRUE; 2323637a0070SStefano Zampini } 2324637a0070SStefano Zampini } else { 2325637a0070SStefano Zampini ierr = MatSetType(*A,MATSEQDENSECUDA);CHKERRQ(ierr); 2326637a0070SStefano Zampini ierr = MatSeqDenseCUDASetPreallocation(*A,data);CHKERRQ(ierr); 2327637a0070SStefano Zampini } 2328637a0070SStefano Zampini PetscFunctionReturn(0); 2329637a0070SStefano Zampini } 2330637a0070SStefano Zampini #endif 2331637a0070SStefano Zampini 23326849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat) 23338965ea79SLois Curfman McInnes { 23348965ea79SLois Curfman McInnes Mat mat; 23353501a2bdSLois Curfman McInnes Mat_MPIDense *a,*oldmat = (Mat_MPIDense*)A->data; 2336dfbe8321SBarry Smith PetscErrorCode ierr; 23378965ea79SLois Curfman McInnes 23383a40ed3dSBarry Smith PetscFunctionBegin; 23398965ea79SLois Curfman McInnes *newmat = 0; 2340ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&mat);CHKERRQ(ierr); 2341d0f46423SBarry Smith ierr = MatSetSizes(mat,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 23427adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)A)->type_name);CHKERRQ(ierr); 2343834f8fabSBarry Smith a = (Mat_MPIDense*)mat->data; 23445aa7edbeSHong Zhang 2345d5f3da31SBarry Smith mat->factortype = A->factortype; 2346c456f294SBarry Smith mat->assembled = PETSC_TRUE; 2347273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 23488965ea79SLois Curfman McInnes 23498965ea79SLois Curfman McInnes a->size = oldmat->size; 23508965ea79SLois Curfman McInnes a->rank = oldmat->rank; 2351e0fa3b82SLois Curfman McInnes mat->insertmode = NOT_SET_VALUES; 23523782ba37SSatish Balay a->donotstash = oldmat->donotstash; 2353e04c1aa4SHong Zhang 23541e1e43feSBarry Smith ierr = PetscLayoutReference(A->rmap,&mat->rmap);CHKERRQ(ierr); 23551e1e43feSBarry Smith ierr = PetscLayoutReference(A->cmap,&mat->cmap);CHKERRQ(ierr); 23568965ea79SLois Curfman McInnes 23575609ef8eSBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 23583bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 2359637a0070SStefano Zampini ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 236001b82886SBarry Smith 23618965ea79SLois Curfman McInnes *newmat = mat; 23623a40ed3dSBarry Smith PetscFunctionReturn(0); 23638965ea79SLois Curfman McInnes } 23648965ea79SLois Curfman McInnes 2365eb91f321SVaclav Hapla PetscErrorCode MatLoad_MPIDense(Mat newMat, PetscViewer viewer) 2366eb91f321SVaclav Hapla { 2367eb91f321SVaclav Hapla PetscErrorCode ierr; 236887d5ce66SSatish Balay PetscBool isbinary; 236987d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 237087d5ce66SSatish Balay PetscBool ishdf5; 237187d5ce66SSatish Balay #endif 2372eb91f321SVaclav Hapla 2373eb91f321SVaclav Hapla PetscFunctionBegin; 2374eb91f321SVaclav Hapla PetscValidHeaderSpecific(newMat,MAT_CLASSID,1); 2375eb91f321SVaclav Hapla PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2); 2376eb91f321SVaclav Hapla /* force binary viewer to load .info file if it has not yet done so */ 2377eb91f321SVaclav Hapla ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr); 2378eb91f321SVaclav Hapla ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 237987d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 2380eb91f321SVaclav Hapla ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERHDF5, &ishdf5);CHKERRQ(ierr); 238187d5ce66SSatish Balay #endif 2382eb91f321SVaclav Hapla if (isbinary) { 23838491ab44SLisandro Dalcin ierr = MatLoad_Dense_Binary(newMat,viewer);CHKERRQ(ierr); 2384eb91f321SVaclav Hapla #if defined(PETSC_HAVE_HDF5) 238587d5ce66SSatish Balay } else if (ishdf5) { 2386eb91f321SVaclav Hapla ierr = MatLoad_Dense_HDF5(newMat,viewer);CHKERRQ(ierr); 2387eb91f321SVaclav Hapla #endif 238887d5ce66SSatish Balay } else SETERRQ2(PetscObjectComm((PetscObject)newMat),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)newMat)->type_name); 2389eb91f321SVaclav Hapla PetscFunctionReturn(0); 2390eb91f321SVaclav Hapla } 2391eb91f321SVaclav Hapla 2392ace3abfcSBarry Smith PetscErrorCode MatEqual_MPIDense(Mat A,Mat B,PetscBool *flag) 23936e4ee0c6SHong Zhang { 23946e4ee0c6SHong Zhang Mat_MPIDense *matB = (Mat_MPIDense*)B->data,*matA = (Mat_MPIDense*)A->data; 23956e4ee0c6SHong Zhang Mat a,b; 2396ace3abfcSBarry Smith PetscBool flg; 23976e4ee0c6SHong Zhang PetscErrorCode ierr; 239890ace30eSBarry Smith 23996e4ee0c6SHong Zhang PetscFunctionBegin; 24006e4ee0c6SHong Zhang a = matA->A; 24016e4ee0c6SHong Zhang b = matB->A; 24026e4ee0c6SHong Zhang ierr = MatEqual(a,b,&flg);CHKERRQ(ierr); 2403b2566f29SBarry Smith ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 24046e4ee0c6SHong Zhang PetscFunctionReturn(0); 24056e4ee0c6SHong Zhang } 240690ace30eSBarry Smith 2407baa3c1c6SHong Zhang PetscErrorCode MatDestroy_MatTransMatMult_MPIDense_MPIDense(Mat A) 2408baa3c1c6SHong Zhang { 2409baa3c1c6SHong Zhang PetscErrorCode ierr; 2410baa3c1c6SHong Zhang Mat_MPIDense *a = (Mat_MPIDense*)A->data; 2411baa3c1c6SHong Zhang Mat_TransMatMultDense *atb = a->atbdense; 2412baa3c1c6SHong Zhang 2413baa3c1c6SHong Zhang PetscFunctionBegin; 2414637a0070SStefano Zampini ierr = PetscFree2(atb->sendbuf,atb->recvcounts);CHKERRQ(ierr); 2415637a0070SStefano Zampini ierr = MatDestroy(&atb->atb);CHKERRQ(ierr); 2416637a0070SStefano Zampini ierr = (*atb->destroy)(A);CHKERRQ(ierr); 2417baa3c1c6SHong Zhang ierr = PetscFree(atb);CHKERRQ(ierr); 2418baa3c1c6SHong Zhang PetscFunctionReturn(0); 2419baa3c1c6SHong Zhang } 2420baa3c1c6SHong Zhang 2421cc48ffa7SToby Isaac PetscErrorCode MatDestroy_MatMatTransMult_MPIDense_MPIDense(Mat A) 2422cc48ffa7SToby Isaac { 2423cc48ffa7SToby Isaac PetscErrorCode ierr; 2424cc48ffa7SToby Isaac Mat_MPIDense *a = (Mat_MPIDense*)A->data; 2425cc48ffa7SToby Isaac Mat_MatTransMultDense *abt = a->abtdense; 2426cc48ffa7SToby Isaac 2427cc48ffa7SToby Isaac PetscFunctionBegin; 2428cc48ffa7SToby Isaac ierr = PetscFree2(abt->buf[0],abt->buf[1]);CHKERRQ(ierr); 2429faa55883SToby Isaac ierr = PetscFree2(abt->recvcounts,abt->recvdispls);CHKERRQ(ierr); 2430cc48ffa7SToby Isaac ierr = (abt->destroy)(A);CHKERRQ(ierr); 2431cc48ffa7SToby Isaac ierr = PetscFree(abt);CHKERRQ(ierr); 2432cc48ffa7SToby Isaac PetscFunctionReturn(0); 2433cc48ffa7SToby Isaac } 2434cc48ffa7SToby Isaac 2435cb20be35SHong Zhang PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 2436cb20be35SHong Zhang { 2437baa3c1c6SHong Zhang Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 2438baa3c1c6SHong Zhang Mat_TransMatMultDense *atb = c->atbdense; 2439cb20be35SHong Zhang PetscErrorCode ierr; 2440cb20be35SHong Zhang MPI_Comm comm; 2441637a0070SStefano Zampini PetscMPIInt size,*recvcounts=atb->recvcounts; 2442637a0070SStefano Zampini PetscScalar *carray,*sendbuf=atb->sendbuf; 2443637a0070SStefano Zampini const PetscScalar *atbarray; 2444d5017740SHong Zhang PetscInt i,cN=C->cmap->N,cM=C->rmap->N,proc,k,j; 2445e68c0b26SHong Zhang const PetscInt *ranges; 2446cb20be35SHong Zhang 2447cb20be35SHong Zhang PetscFunctionBegin; 2448cb20be35SHong Zhang ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 2449cb20be35SHong Zhang ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2450e68c0b26SHong Zhang 2451c5ef1628SHong Zhang /* compute atbarray = aseq^T * bseq */ 2452637a0070SStefano Zampini ierr = MatTransposeMatMult(a->A,b->A,atb->atb ? MAT_REUSE_MATRIX : MAT_INITIAL_MATRIX,PETSC_DEFAULT,&atb->atb);CHKERRQ(ierr); 2453cb20be35SHong Zhang 2454cb20be35SHong Zhang ierr = MatGetOwnershipRanges(C,&ranges);CHKERRQ(ierr); 2455c5ef1628SHong Zhang for (i=0; i<size; i++) recvcounts[i] = (ranges[i+1] - ranges[i])*cN; 2456cb20be35SHong Zhang 2457660d5466SHong Zhang /* arrange atbarray into sendbuf */ 2458637a0070SStefano Zampini ierr = MatDenseGetArrayRead(atb->atb,&atbarray);CHKERRQ(ierr); 2459637a0070SStefano Zampini for (proc=0, k=0; proc<size; proc++) { 2460baa3c1c6SHong Zhang for (j=0; j<cN; j++) { 2461c5ef1628SHong Zhang for (i=ranges[proc]; i<ranges[proc+1]; i++) sendbuf[k++] = atbarray[i+j*cM]; 2462cb20be35SHong Zhang } 2463cb20be35SHong Zhang } 2464637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(atb->atb,&atbarray);CHKERRQ(ierr); 2465637a0070SStefano Zampini 2466c5ef1628SHong Zhang /* sum all atbarray to local values of C */ 2467660d5466SHong Zhang ierr = MatDenseGetArray(c->A,&carray);CHKERRQ(ierr); 24683462b7efSHong Zhang ierr = MPI_Reduce_scatter(sendbuf,carray,recvcounts,MPIU_SCALAR,MPIU_SUM,comm);CHKERRQ(ierr); 2469660d5466SHong Zhang ierr = MatDenseRestoreArray(c->A,&carray);CHKERRQ(ierr); 2470cb20be35SHong Zhang PetscFunctionReturn(0); 2471cb20be35SHong Zhang } 2472cb20be35SHong Zhang 24734222ddf1SHong Zhang PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat C) 2474cb20be35SHong Zhang { 2475cb20be35SHong Zhang PetscErrorCode ierr; 2476cb20be35SHong Zhang MPI_Comm comm; 2477baa3c1c6SHong Zhang PetscMPIInt size; 2478660d5466SHong Zhang PetscInt cm=A->cmap->n,cM,cN=B->cmap->N; 2479baa3c1c6SHong Zhang Mat_MPIDense *c; 2480baa3c1c6SHong Zhang Mat_TransMatMultDense *atb; 2481cb20be35SHong Zhang 2482cb20be35SHong Zhang PetscFunctionBegin; 2483baa3c1c6SHong Zhang ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 2484cb20be35SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) { 2485cb20be35SHong Zhang SETERRQ4(comm,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != B (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 2486cb20be35SHong Zhang } 2487cb20be35SHong Zhang 24884222ddf1SHong Zhang /* create matrix product C */ 24894222ddf1SHong Zhang ierr = MatSetSizes(C,cm,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 24904222ddf1SHong Zhang ierr = MatSetType(C,MATMPIDENSE);CHKERRQ(ierr); 249118992e5dSStefano Zampini ierr = MatSetUp(C);CHKERRQ(ierr); 24924222ddf1SHong Zhang ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 24934222ddf1SHong Zhang ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2494baa3c1c6SHong Zhang 24954222ddf1SHong Zhang /* create data structure for reuse C */ 2496baa3c1c6SHong Zhang ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2497baa3c1c6SHong Zhang ierr = PetscNew(&atb);CHKERRQ(ierr); 24984222ddf1SHong Zhang cM = C->rmap->N; 2499637a0070SStefano Zampini ierr = PetscMalloc2(cM*cN,&atb->sendbuf,size,&atb->recvcounts);CHKERRQ(ierr); 2500baa3c1c6SHong Zhang 25014222ddf1SHong Zhang c = (Mat_MPIDense*)C->data; 2502baa3c1c6SHong Zhang c->atbdense = atb; 25034222ddf1SHong Zhang atb->destroy = C->ops->destroy; 25044222ddf1SHong Zhang C->ops->destroy = MatDestroy_MatTransMatMult_MPIDense_MPIDense; 2505cb20be35SHong Zhang PetscFunctionReturn(0); 2506cb20be35SHong Zhang } 2507cb20be35SHong Zhang 25084222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat A, Mat B, PetscReal fill, Mat C) 2509cb20be35SHong Zhang { 2510cb20be35SHong Zhang PetscErrorCode ierr; 2511cc48ffa7SToby Isaac MPI_Comm comm; 2512cc48ffa7SToby Isaac PetscMPIInt i, size; 2513cc48ffa7SToby Isaac PetscInt maxRows, bufsiz; 2514cc48ffa7SToby Isaac Mat_MPIDense *c; 2515cc48ffa7SToby Isaac PetscMPIInt tag; 25164222ddf1SHong Zhang PetscInt alg; 2517cc48ffa7SToby Isaac Mat_MatTransMultDense *abt; 25184222ddf1SHong Zhang Mat_Product *product = C->product; 25194222ddf1SHong Zhang PetscBool flg; 2520cc48ffa7SToby Isaac 2521cc48ffa7SToby Isaac PetscFunctionBegin; 25224222ddf1SHong Zhang /* check local size of A and B */ 2523637a0070SStefano Zampini if (A->cmap->n != B->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local column dimensions are incompatible, A (%D) != B (%D)",A->cmap->n,B->cmap->n); 2524cc48ffa7SToby Isaac 25254222ddf1SHong Zhang ierr = PetscStrcmp(product->alg,"allgatherv",&flg);CHKERRQ(ierr); 2526637a0070SStefano Zampini alg = flg ? 0 : 1; 2527cc48ffa7SToby Isaac 25284222ddf1SHong Zhang /* setup matrix product C */ 25294222ddf1SHong Zhang ierr = MatSetSizes(C,A->rmap->n,B->rmap->n,A->rmap->N,B->rmap->N);CHKERRQ(ierr); 25304222ddf1SHong Zhang ierr = MatSetType(C,MATMPIDENSE);CHKERRQ(ierr); 253118992e5dSStefano Zampini ierr = MatSetUp(C);CHKERRQ(ierr); 25324222ddf1SHong Zhang ierr = PetscObjectGetNewTag((PetscObject)C, &tag);CHKERRQ(ierr); 25334222ddf1SHong Zhang ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 25344222ddf1SHong Zhang ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 25354222ddf1SHong Zhang 25364222ddf1SHong Zhang /* create data structure for reuse C */ 25374222ddf1SHong Zhang ierr = PetscObjectGetComm((PetscObject)C,&comm);CHKERRQ(ierr); 2538cc48ffa7SToby Isaac ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2539cc48ffa7SToby Isaac ierr = PetscNew(&abt);CHKERRQ(ierr); 2540cc48ffa7SToby Isaac abt->tag = tag; 2541faa55883SToby Isaac abt->alg = alg; 2542faa55883SToby Isaac switch (alg) { 25434222ddf1SHong Zhang case 1: /* alg: "cyclic" */ 2544cc48ffa7SToby Isaac for (maxRows = 0, i = 0; i < size; i++) maxRows = PetscMax(maxRows, (B->rmap->range[i + 1] - B->rmap->range[i])); 2545cc48ffa7SToby Isaac bufsiz = A->cmap->N * maxRows; 2546cc48ffa7SToby Isaac ierr = PetscMalloc2(bufsiz,&(abt->buf[0]),bufsiz,&(abt->buf[1]));CHKERRQ(ierr); 2547faa55883SToby Isaac break; 25484222ddf1SHong Zhang default: /* alg: "allgatherv" */ 2549faa55883SToby Isaac ierr = PetscMalloc2(B->rmap->n * B->cmap->N, &(abt->buf[0]), B->rmap->N * B->cmap->N, &(abt->buf[1]));CHKERRQ(ierr); 2550faa55883SToby Isaac ierr = PetscMalloc2(size,&(abt->recvcounts),size+1,&(abt->recvdispls));CHKERRQ(ierr); 2551faa55883SToby Isaac for (i = 0; i <= size; i++) abt->recvdispls[i] = B->rmap->range[i] * A->cmap->N; 2552faa55883SToby Isaac for (i = 0; i < size; i++) abt->recvcounts[i] = abt->recvdispls[i + 1] - abt->recvdispls[i]; 2553faa55883SToby Isaac break; 2554faa55883SToby Isaac } 2555cc48ffa7SToby Isaac 25564222ddf1SHong Zhang c = (Mat_MPIDense*)C->data; 2557cc48ffa7SToby Isaac c->abtdense = abt; 25584222ddf1SHong Zhang abt->destroy = C->ops->destroy; 25594222ddf1SHong Zhang C->ops->destroy = MatDestroy_MatMatTransMult_MPIDense_MPIDense; 25604222ddf1SHong Zhang C->ops->mattransposemultnumeric = MatMatTransposeMultNumeric_MPIDense_MPIDense; 2561cc48ffa7SToby Isaac PetscFunctionReturn(0); 2562cc48ffa7SToby Isaac } 2563cc48ffa7SToby Isaac 2564faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(Mat A, Mat B, Mat C) 2565cc48ffa7SToby Isaac { 2566cc48ffa7SToby Isaac Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 2567cc48ffa7SToby Isaac Mat_MatTransMultDense *abt = c->abtdense; 2568cc48ffa7SToby Isaac PetscErrorCode ierr; 2569cc48ffa7SToby Isaac MPI_Comm comm; 2570cc48ffa7SToby Isaac PetscMPIInt rank,size, sendsiz, recvsiz, sendto, recvfrom, recvisfrom; 2571637a0070SStefano Zampini PetscScalar *sendbuf, *recvbuf=0, *cv; 2572cc48ffa7SToby Isaac PetscInt i,cK=A->cmap->N,k,j,bn; 2573cc48ffa7SToby Isaac PetscScalar _DOne=1.0,_DZero=0.0; 2574637a0070SStefano Zampini const PetscScalar *av,*bv; 2575637a0070SStefano Zampini PetscBLASInt cm, cn, ck, alda, blda, clda; 2576cc48ffa7SToby Isaac MPI_Request reqs[2]; 2577cc48ffa7SToby Isaac const PetscInt *ranges; 2578cc48ffa7SToby Isaac 2579cc48ffa7SToby Isaac PetscFunctionBegin; 2580cc48ffa7SToby Isaac ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 2581cc48ffa7SToby Isaac ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 2582cc48ffa7SToby Isaac ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2583637a0070SStefano Zampini ierr = MatDenseGetArrayRead(a->A,&av);CHKERRQ(ierr); 2584637a0070SStefano Zampini ierr = MatDenseGetArrayRead(b->A,&bv);CHKERRQ(ierr); 2585637a0070SStefano Zampini ierr = MatDenseGetArray(c->A,&cv);CHKERRQ(ierr); 2586637a0070SStefano Zampini ierr = MatDenseGetLDA(a->A,&i);CHKERRQ(ierr); 2587637a0070SStefano Zampini ierr = PetscBLASIntCast(i,&alda);CHKERRQ(ierr); 2588637a0070SStefano Zampini ierr = MatDenseGetLDA(b->A,&i);CHKERRQ(ierr); 2589637a0070SStefano Zampini ierr = PetscBLASIntCast(i,&blda);CHKERRQ(ierr); 2590637a0070SStefano Zampini ierr = MatDenseGetLDA(c->A,&i);CHKERRQ(ierr); 2591637a0070SStefano Zampini ierr = PetscBLASIntCast(i,&clda);CHKERRQ(ierr); 2592cc48ffa7SToby Isaac ierr = MatGetOwnershipRanges(B,&ranges);CHKERRQ(ierr); 2593cc48ffa7SToby Isaac bn = B->rmap->n; 2594637a0070SStefano Zampini if (blda == bn) { 2595637a0070SStefano Zampini sendbuf = (PetscScalar*)bv; 2596cc48ffa7SToby Isaac } else { 2597cc48ffa7SToby Isaac sendbuf = abt->buf[0]; 2598cc48ffa7SToby Isaac for (k = 0, i = 0; i < cK; i++) { 2599cc48ffa7SToby Isaac for (j = 0; j < bn; j++, k++) { 2600637a0070SStefano Zampini sendbuf[k] = bv[i * blda + j]; 2601cc48ffa7SToby Isaac } 2602cc48ffa7SToby Isaac } 2603cc48ffa7SToby Isaac } 2604cc48ffa7SToby Isaac if (size > 1) { 2605cc48ffa7SToby Isaac sendto = (rank + size - 1) % size; 2606cc48ffa7SToby Isaac recvfrom = (rank + size + 1) % size; 2607cc48ffa7SToby Isaac } else { 2608cc48ffa7SToby Isaac sendto = recvfrom = 0; 2609cc48ffa7SToby Isaac } 2610cc48ffa7SToby Isaac ierr = PetscBLASIntCast(cK,&ck);CHKERRQ(ierr); 2611cc48ffa7SToby Isaac ierr = PetscBLASIntCast(c->A->rmap->n,&cm);CHKERRQ(ierr); 2612cc48ffa7SToby Isaac recvisfrom = rank; 2613cc48ffa7SToby Isaac for (i = 0; i < size; i++) { 2614cc48ffa7SToby Isaac /* we have finished receiving in sending, bufs can be read/modified */ 2615cc48ffa7SToby Isaac PetscInt nextrecvisfrom = (recvisfrom + 1) % size; /* which process the next recvbuf will originate on */ 2616cc48ffa7SToby Isaac PetscInt nextbn = ranges[nextrecvisfrom + 1] - ranges[nextrecvisfrom]; 2617cc48ffa7SToby Isaac 2618cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2619cc48ffa7SToby Isaac /* start the cyclic sends from sendbuf, to recvbuf (which will switch to sendbuf) */ 2620cc48ffa7SToby Isaac sendsiz = cK * bn; 2621cc48ffa7SToby Isaac recvsiz = cK * nextbn; 2622cc48ffa7SToby Isaac recvbuf = (i & 1) ? abt->buf[0] : abt->buf[1]; 2623cc48ffa7SToby Isaac ierr = MPI_Isend(sendbuf, sendsiz, MPIU_SCALAR, sendto, abt->tag, comm, &reqs[0]);CHKERRQ(ierr); 2624cc48ffa7SToby Isaac ierr = MPI_Irecv(recvbuf, recvsiz, MPIU_SCALAR, recvfrom, abt->tag, comm, &reqs[1]);CHKERRQ(ierr); 2625cc48ffa7SToby Isaac } 2626cc48ffa7SToby Isaac 2627cc48ffa7SToby Isaac /* local aseq * sendbuf^T */ 2628cc48ffa7SToby Isaac ierr = PetscBLASIntCast(ranges[recvisfrom + 1] - ranges[recvisfrom], &cn);CHKERRQ(ierr); 2629*50ce3c9cSStefano Zampini if (cm && cn && ck) PetscStackCallBLAS("BLASgemm",BLASgemm_("N","T",&cm,&cn,&ck,&_DOne,av,&alda,sendbuf,&cn,&_DZero,cv + clda * ranges[recvisfrom],&clda)); 2630cc48ffa7SToby Isaac 2631cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2632cc48ffa7SToby Isaac /* wait for the sends and receives to complete, swap sendbuf and recvbuf */ 2633cc48ffa7SToby Isaac ierr = MPI_Waitall(2, reqs, MPI_STATUSES_IGNORE);CHKERRQ(ierr); 2634cc48ffa7SToby Isaac } 2635cc48ffa7SToby Isaac bn = nextbn; 2636cc48ffa7SToby Isaac recvisfrom = nextrecvisfrom; 2637cc48ffa7SToby Isaac sendbuf = recvbuf; 2638cc48ffa7SToby Isaac } 2639637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(a->A,&av);CHKERRQ(ierr); 2640637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(b->A,&bv);CHKERRQ(ierr); 2641637a0070SStefano Zampini ierr = MatDenseRestoreArray(c->A,&cv);CHKERRQ(ierr); 2642cc48ffa7SToby Isaac PetscFunctionReturn(0); 2643cc48ffa7SToby Isaac } 2644cc48ffa7SToby Isaac 2645faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(Mat A, Mat B, Mat C) 2646faa55883SToby Isaac { 2647faa55883SToby Isaac Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 2648faa55883SToby Isaac Mat_MatTransMultDense *abt = c->abtdense; 2649faa55883SToby Isaac PetscErrorCode ierr; 2650faa55883SToby Isaac MPI_Comm comm; 2651637a0070SStefano Zampini PetscMPIInt size; 2652637a0070SStefano Zampini PetscScalar *cv, *sendbuf, *recvbuf; 2653637a0070SStefano Zampini const PetscScalar *av,*bv; 2654637a0070SStefano Zampini PetscInt blda,i,cK=A->cmap->N,k,j,bn; 2655faa55883SToby Isaac PetscScalar _DOne=1.0,_DZero=0.0; 2656637a0070SStefano Zampini PetscBLASInt cm, cn, ck, alda, clda; 2657faa55883SToby Isaac 2658faa55883SToby Isaac PetscFunctionBegin; 2659faa55883SToby Isaac ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 2660faa55883SToby Isaac ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2661637a0070SStefano Zampini ierr = MatDenseGetArrayRead(a->A,&av);CHKERRQ(ierr); 2662637a0070SStefano Zampini ierr = MatDenseGetArrayRead(b->A,&bv);CHKERRQ(ierr); 2663637a0070SStefano Zampini ierr = MatDenseGetArray(c->A,&cv);CHKERRQ(ierr); 2664637a0070SStefano Zampini ierr = MatDenseGetLDA(a->A,&i);CHKERRQ(ierr); 2665637a0070SStefano Zampini ierr = PetscBLASIntCast(i,&alda);CHKERRQ(ierr); 2666637a0070SStefano Zampini ierr = MatDenseGetLDA(b->A,&blda);CHKERRQ(ierr); 2667637a0070SStefano Zampini ierr = MatDenseGetLDA(c->A,&i);CHKERRQ(ierr); 2668637a0070SStefano Zampini ierr = PetscBLASIntCast(i,&clda);CHKERRQ(ierr); 2669faa55883SToby Isaac /* copy transpose of B into buf[0] */ 2670faa55883SToby Isaac bn = B->rmap->n; 2671faa55883SToby Isaac sendbuf = abt->buf[0]; 2672faa55883SToby Isaac recvbuf = abt->buf[1]; 2673faa55883SToby Isaac for (k = 0, j = 0; j < bn; j++) { 2674faa55883SToby Isaac for (i = 0; i < cK; i++, k++) { 2675637a0070SStefano Zampini sendbuf[k] = bv[i * blda + j]; 2676faa55883SToby Isaac } 2677faa55883SToby Isaac } 2678637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(b->A,&bv);CHKERRQ(ierr); 2679faa55883SToby Isaac ierr = MPI_Allgatherv(sendbuf, bn * cK, MPIU_SCALAR, recvbuf, abt->recvcounts, abt->recvdispls, MPIU_SCALAR, comm);CHKERRQ(ierr); 2680faa55883SToby Isaac ierr = PetscBLASIntCast(cK,&ck);CHKERRQ(ierr); 2681faa55883SToby Isaac ierr = PetscBLASIntCast(c->A->rmap->n,&cm);CHKERRQ(ierr); 2682faa55883SToby Isaac ierr = PetscBLASIntCast(c->A->cmap->n,&cn);CHKERRQ(ierr); 2683*50ce3c9cSStefano Zampini if (cm && cn && ck) PetscStackCallBLAS("BLASgemm",BLASgemm_("N","N",&cm,&cn,&ck,&_DOne,av,&alda,recvbuf,&ck,&_DZero,cv,&clda)); 2684637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(a->A,&av);CHKERRQ(ierr); 2685637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(b->A,&bv);CHKERRQ(ierr); 2686637a0070SStefano Zampini ierr = MatDenseRestoreArray(c->A,&cv);CHKERRQ(ierr); 2687faa55883SToby Isaac PetscFunctionReturn(0); 2688faa55883SToby Isaac } 2689faa55883SToby Isaac 2690faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat A, Mat B, Mat C) 2691faa55883SToby Isaac { 2692faa55883SToby Isaac Mat_MPIDense *c=(Mat_MPIDense*)C->data; 2693faa55883SToby Isaac Mat_MatTransMultDense *abt = c->abtdense; 2694faa55883SToby Isaac PetscErrorCode ierr; 2695faa55883SToby Isaac 2696faa55883SToby Isaac PetscFunctionBegin; 2697faa55883SToby Isaac switch (abt->alg) { 2698faa55883SToby Isaac case 1: 2699faa55883SToby Isaac ierr = MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(A, B, C);CHKERRQ(ierr); 2700faa55883SToby Isaac break; 2701faa55883SToby Isaac default: 2702faa55883SToby Isaac ierr = MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(A, B, C);CHKERRQ(ierr); 2703faa55883SToby Isaac break; 2704faa55883SToby Isaac } 2705faa55883SToby Isaac PetscFunctionReturn(0); 2706faa55883SToby Isaac } 2707faa55883SToby Isaac 2708320f2790SHong Zhang PetscErrorCode MatDestroy_MatMatMult_MPIDense_MPIDense(Mat A) 2709320f2790SHong Zhang { 2710320f2790SHong Zhang PetscErrorCode ierr; 2711320f2790SHong Zhang Mat_MPIDense *a = (Mat_MPIDense*)A->data; 2712320f2790SHong Zhang Mat_MatMultDense *ab = a->abdense; 2713320f2790SHong Zhang 2714320f2790SHong Zhang PetscFunctionBegin; 2715320f2790SHong Zhang ierr = MatDestroy(&ab->Ce);CHKERRQ(ierr); 2716320f2790SHong Zhang ierr = MatDestroy(&ab->Ae);CHKERRQ(ierr); 2717320f2790SHong Zhang ierr = MatDestroy(&ab->Be);CHKERRQ(ierr); 2718320f2790SHong Zhang 2719320f2790SHong Zhang ierr = (ab->destroy)(A);CHKERRQ(ierr); 2720320f2790SHong Zhang ierr = PetscFree(ab);CHKERRQ(ierr); 2721320f2790SHong Zhang PetscFunctionReturn(0); 2722320f2790SHong Zhang } 2723320f2790SHong Zhang 27245242a7b1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 2725320f2790SHong Zhang PetscErrorCode MatMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 2726320f2790SHong Zhang { 2727320f2790SHong Zhang PetscErrorCode ierr; 2728320f2790SHong Zhang Mat_MPIDense *c=(Mat_MPIDense*)C->data; 2729320f2790SHong Zhang Mat_MatMultDense *ab=c->abdense; 2730320f2790SHong Zhang 2731320f2790SHong Zhang PetscFunctionBegin; 2732de0a22f0SHong Zhang ierr = MatConvert_MPIDense_Elemental(A,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Ae);CHKERRQ(ierr); 2733de0a22f0SHong Zhang ierr = MatConvert_MPIDense_Elemental(B,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Be);CHKERRQ(ierr); 27344222ddf1SHong Zhang ierr = MatMatMultNumeric_Elemental(ab->Ae,ab->Be,ab->Ce);CHKERRQ(ierr); 2735de0a22f0SHong Zhang ierr = MatConvert(ab->Ce,MATMPIDENSE,MAT_REUSE_MATRIX,&C);CHKERRQ(ierr); 2736320f2790SHong Zhang PetscFunctionReturn(0); 2737320f2790SHong Zhang } 2738320f2790SHong Zhang 27394222ddf1SHong Zhang PetscErrorCode MatMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat C) 2740320f2790SHong Zhang { 2741320f2790SHong Zhang PetscErrorCode ierr; 2742320f2790SHong Zhang Mat Ae,Be,Ce; 2743320f2790SHong Zhang Mat_MPIDense *c; 2744320f2790SHong Zhang Mat_MatMultDense *ab; 2745320f2790SHong Zhang 2746320f2790SHong Zhang PetscFunctionBegin; 27474222ddf1SHong Zhang /* check local size of A and B */ 2748320f2790SHong Zhang if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend) { 2749378336b6SHong Zhang SETERRQ4(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != B (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 2750320f2790SHong Zhang } 2751320f2790SHong Zhang 27524222ddf1SHong Zhang /* create elemental matrices Ae and Be */ 27534222ddf1SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)A), &Ae);CHKERRQ(ierr); 27544222ddf1SHong Zhang ierr = MatSetSizes(Ae,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 27554222ddf1SHong Zhang ierr = MatSetType(Ae,MATELEMENTAL);CHKERRQ(ierr); 27564222ddf1SHong Zhang ierr = MatSetUp(Ae);CHKERRQ(ierr); 27574222ddf1SHong Zhang ierr = MatSetOption(Ae,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 2758320f2790SHong Zhang 27594222ddf1SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)B), &Be);CHKERRQ(ierr); 27604222ddf1SHong Zhang ierr = MatSetSizes(Be,PETSC_DECIDE,PETSC_DECIDE,B->rmap->N,B->cmap->N);CHKERRQ(ierr); 27614222ddf1SHong Zhang ierr = MatSetType(Be,MATELEMENTAL);CHKERRQ(ierr); 27624222ddf1SHong Zhang ierr = MatSetUp(Be);CHKERRQ(ierr); 27634222ddf1SHong Zhang ierr = MatSetOption(Be,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 2764320f2790SHong Zhang 27654222ddf1SHong Zhang /* compute symbolic Ce = Ae*Be */ 27664222ddf1SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)C),&Ce);CHKERRQ(ierr); 27674222ddf1SHong Zhang ierr = MatMatMultSymbolic_Elemental(Ae,Be,fill,Ce);CHKERRQ(ierr); 27684222ddf1SHong Zhang 27694222ddf1SHong Zhang /* setup C */ 27704222ddf1SHong Zhang ierr = MatSetSizes(C,A->rmap->n,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 27714222ddf1SHong Zhang ierr = MatSetType(C,MATDENSE);CHKERRQ(ierr); 27724222ddf1SHong Zhang ierr = MatSetUp(C);CHKERRQ(ierr); 2773320f2790SHong Zhang 2774320f2790SHong Zhang /* create data structure for reuse Cdense */ 2775320f2790SHong Zhang ierr = PetscNew(&ab);CHKERRQ(ierr); 27764222ddf1SHong Zhang c = (Mat_MPIDense*)C->data; 2777320f2790SHong Zhang c->abdense = ab; 2778320f2790SHong Zhang 2779320f2790SHong Zhang ab->Ae = Ae; 2780320f2790SHong Zhang ab->Be = Be; 2781320f2790SHong Zhang ab->Ce = Ce; 27824222ddf1SHong Zhang ab->destroy = C->ops->destroy; 27834222ddf1SHong Zhang C->ops->destroy = MatDestroy_MatMatMult_MPIDense_MPIDense; 27844222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIDense; 27854222ddf1SHong Zhang C->ops->productnumeric = MatProductNumeric_AB; 2786320f2790SHong Zhang PetscFunctionReturn(0); 2787320f2790SHong Zhang } 27884222ddf1SHong Zhang #endif 27894222ddf1SHong Zhang /* ----------------------------------------------- */ 27904222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 27914222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_AB(Mat C) 2792320f2790SHong Zhang { 2793320f2790SHong Zhang PetscFunctionBegin; 27944222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIDense; 27954222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 27964222ddf1SHong Zhang C->ops->productnumeric = MatProductNumeric_AB; 2797320f2790SHong Zhang PetscFunctionReturn(0); 2798320f2790SHong Zhang } 27995242a7b1SHong Zhang #endif 280086aefd0dSHong Zhang 28014222ddf1SHong Zhang static PetscErrorCode MatProductSymbolic_AtB_MPIDense(Mat C) 28024222ddf1SHong Zhang { 28034222ddf1SHong Zhang PetscErrorCode ierr; 28044222ddf1SHong Zhang Mat_Product *product = C->product; 28054222ddf1SHong Zhang 28064222ddf1SHong Zhang PetscFunctionBegin; 28074222ddf1SHong Zhang ierr = MatTransposeMatMultSymbolic_MPIDense_MPIDense(product->A,product->B,product->fill,C);CHKERRQ(ierr); 28084222ddf1SHong Zhang C->ops->productnumeric = MatProductNumeric_AtB; 28094222ddf1SHong Zhang C->ops->transposematmultnumeric = MatTransposeMatMultNumeric_MPIDense_MPIDense; 28104222ddf1SHong Zhang PetscFunctionReturn(0); 28114222ddf1SHong Zhang } 28124222ddf1SHong Zhang 28134222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_AtB(Mat C) 28144222ddf1SHong Zhang { 28154222ddf1SHong Zhang Mat_Product *product = C->product; 28164222ddf1SHong Zhang Mat A = product->A,B=product->B; 28174222ddf1SHong Zhang 28184222ddf1SHong Zhang PetscFunctionBegin; 28194222ddf1SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) 28204222ddf1SHong Zhang SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, (%D, %D) != (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 28214222ddf1SHong Zhang 28224222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AtB_MPIDense; 28234222ddf1SHong Zhang PetscFunctionReturn(0); 28244222ddf1SHong Zhang } 28254222ddf1SHong Zhang 28264222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_ABt(Mat C) 28274222ddf1SHong Zhang { 28284222ddf1SHong Zhang PetscErrorCode ierr; 28294222ddf1SHong Zhang Mat_Product *product = C->product; 28304222ddf1SHong Zhang const char *algTypes[2] = {"allgatherv","cyclic"}; 28314222ddf1SHong Zhang PetscInt alg,nalg = 2; 28324222ddf1SHong Zhang PetscBool flg = PETSC_FALSE; 28334222ddf1SHong Zhang 28344222ddf1SHong Zhang PetscFunctionBegin; 28354222ddf1SHong Zhang /* Set default algorithm */ 28364222ddf1SHong Zhang alg = 0; /* default is allgatherv */ 28374222ddf1SHong Zhang ierr = PetscStrcmp(product->alg,"default",&flg);CHKERRQ(ierr); 28384222ddf1SHong Zhang if (flg) { 28394222ddf1SHong Zhang ierr = MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]);CHKERRQ(ierr); 28404222ddf1SHong Zhang } 28414222ddf1SHong Zhang 28424222ddf1SHong Zhang /* Get runtime option */ 28434222ddf1SHong Zhang if (product->api_user) { 28444222ddf1SHong Zhang ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatMatTransposeMult","Mat");CHKERRQ(ierr); 28454222ddf1SHong Zhang ierr = PetscOptionsEList("-matmattransmult_mpidense_mpidense_via","Algorithmic approach","MatMatTransposeMult",algTypes,nalg,algTypes[alg],&alg,&flg);CHKERRQ(ierr); 28464222ddf1SHong Zhang ierr = PetscOptionsEnd();CHKERRQ(ierr); 28474222ddf1SHong Zhang } else { 28484222ddf1SHong Zhang ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatProduct_ABt","Mat");CHKERRQ(ierr); 28494222ddf1SHong Zhang ierr = PetscOptionsEList("-matproduct_abt_mpidense_mpidense_via","Algorithmic approach","MatProduct_ABt",algTypes,nalg,algTypes[alg],&alg,&flg);CHKERRQ(ierr); 28504222ddf1SHong Zhang ierr = PetscOptionsEnd();CHKERRQ(ierr); 28514222ddf1SHong Zhang } 28524222ddf1SHong Zhang if (flg) { 28534222ddf1SHong Zhang ierr = MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]);CHKERRQ(ierr); 28544222ddf1SHong Zhang } 28554222ddf1SHong Zhang 28564222ddf1SHong Zhang C->ops->mattransposemultsymbolic = MatMatTransposeMultSymbolic_MPIDense_MPIDense; 28574222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_ABt; 28584222ddf1SHong Zhang C->ops->productnumeric = MatProductNumeric_ABt; 28594222ddf1SHong Zhang PetscFunctionReturn(0); 28604222ddf1SHong Zhang } 28614222ddf1SHong Zhang 28624222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense(Mat C) 28634222ddf1SHong Zhang { 28644222ddf1SHong Zhang PetscErrorCode ierr; 28654222ddf1SHong Zhang Mat_Product *product = C->product; 28664222ddf1SHong Zhang 28674222ddf1SHong Zhang PetscFunctionBegin; 28684222ddf1SHong Zhang switch (product->type) { 28694222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 28704222ddf1SHong Zhang case MATPRODUCT_AB: 28714222ddf1SHong Zhang ierr = MatProductSetFromOptions_MPIDense_AB(C);CHKERRQ(ierr); 28724222ddf1SHong Zhang break; 28734222ddf1SHong Zhang #endif 28744222ddf1SHong Zhang case MATPRODUCT_AtB: 28754222ddf1SHong Zhang ierr = MatProductSetFromOptions_MPIDense_AtB(C);CHKERRQ(ierr); 28764222ddf1SHong Zhang break; 28774222ddf1SHong Zhang case MATPRODUCT_ABt: 28784222ddf1SHong Zhang ierr = MatProductSetFromOptions_MPIDense_ABt(C);CHKERRQ(ierr); 28794222ddf1SHong Zhang break; 2880544a5e07SHong Zhang default: SETERRQ1(PetscObjectComm((PetscObject)C),PETSC_ERR_SUP,"MatProduct type %s is not supported for MPIDense and MPIDense matrices",MatProductTypes[product->type]); 28814222ddf1SHong Zhang } 28824222ddf1SHong Zhang PetscFunctionReturn(0); 28834222ddf1SHong Zhang } 2884