1ed3cc1f0SBarry Smith /* 2ed3cc1f0SBarry Smith Basic functions for basic parallel dense matrices. 347d993e7Ssuyashtn Portions of this code are under: 447d993e7Ssuyashtn Copyright (c) 2022 Advanced Micro Devices, Inc. All rights reserved. 5ed3cc1f0SBarry Smith */ 6ed3cc1f0SBarry Smith 7c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h> /*I "petscmat.h" I*/ 88949adfdSHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 9baa3c1c6SHong Zhang #include <petscblaslapack.h> 104186a4bbSPierre Jolivet #include <petsc/private/vecimpl.h> 118965ea79SLois Curfman McInnes 12ab92ecdeSBarry Smith /*@ 1311a5261eSBarry Smith MatDenseGetLocalMatrix - For a `MATMPIDENSE` or `MATSEQDENSE` matrix returns the sequential 14ab92ecdeSBarry Smith matrix that represents the operator. For sequential matrices it returns itself. 15ab92ecdeSBarry Smith 16ab92ecdeSBarry Smith Input Parameter: 172ef1f0ffSBarry Smith . A - the sequential or MPI `MATDENSE` matrix 18ab92ecdeSBarry Smith 19ab92ecdeSBarry Smith Output Parameter: 20ab92ecdeSBarry Smith . B - the inner matrix 21ab92ecdeSBarry Smith 228e6c10adSSatish Balay Level: intermediate 238e6c10adSSatish Balay 241cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MATMPIDENSE`, `MATSEQDENSE` 25ab92ecdeSBarry Smith @*/ 26d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetLocalMatrix(Mat A, Mat *B) 27d71ae5a4SJacob Faibussowitsch { 28ab92ecdeSBarry Smith Mat_MPIDense *mat = (Mat_MPIDense *)A->data; 29ace3abfcSBarry Smith PetscBool flg; 30ab92ecdeSBarry Smith 31ab92ecdeSBarry Smith PetscFunctionBegin; 32d5ea218eSStefano Zampini PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 334f572ea9SToby Isaac PetscAssertPointer(B, 2); 349566063dSJacob Faibussowitsch PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIDENSE, &flg)); 352205254eSKarl Rupp if (flg) *B = mat->A; 36f140bc17SStefano Zampini else { 379566063dSJacob Faibussowitsch PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATSEQDENSE, &flg)); 3828b400f6SJacob Faibussowitsch PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not for matrix type %s", ((PetscObject)A)->type_name); 39f140bc17SStefano Zampini *B = A; 40f140bc17SStefano Zampini } 413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42ab92ecdeSBarry Smith } 43ab92ecdeSBarry Smith 4466976f2fSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIDense(Mat A, Mat B, MatStructure s) 45d71ae5a4SJacob Faibussowitsch { 46a76f77c3SStefano Zampini Mat_MPIDense *Amat = (Mat_MPIDense *)A->data; 47a76f77c3SStefano Zampini Mat_MPIDense *Bmat = (Mat_MPIDense *)B->data; 48a76f77c3SStefano Zampini 49a76f77c3SStefano Zampini PetscFunctionBegin; 509566063dSJacob Faibussowitsch PetscCall(MatCopy(Amat->A, Bmat->A, s)); 513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 52a76f77c3SStefano Zampini } 53a76f77c3SStefano Zampini 54d71ae5a4SJacob Faibussowitsch PetscErrorCode MatShift_MPIDense(Mat A, PetscScalar alpha) 55d71ae5a4SJacob Faibussowitsch { 562f605a99SJose E. Roman Mat_MPIDense *mat = (Mat_MPIDense *)A->data; 572f605a99SJose E. Roman PetscInt j, lda, rstart = A->rmap->rstart, rend = A->rmap->rend, rend2; 582f605a99SJose E. Roman PetscScalar *v; 592f605a99SJose E. Roman 602f605a99SJose E. Roman PetscFunctionBegin; 612f605a99SJose E. Roman PetscCall(MatDenseGetArray(mat->A, &v)); 622f605a99SJose E. Roman PetscCall(MatDenseGetLDA(mat->A, &lda)); 632f605a99SJose E. Roman rend2 = PetscMin(rend, A->cmap->N); 642f605a99SJose E. Roman if (rend2 > rstart) { 652f605a99SJose E. Roman for (j = rstart; j < rend2; j++) v[j - rstart + j * lda] += alpha; 662f605a99SJose E. Roman PetscCall(PetscLogFlops(rend2 - rstart)); 672f605a99SJose E. Roman } 682f605a99SJose E. Roman PetscCall(MatDenseRestoreArray(mat->A, &v)); 693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 702f605a99SJose E. Roman } 712f605a99SJose E. Roman 7266976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRow_MPIDense(Mat A, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 73d71ae5a4SJacob Faibussowitsch { 74ba8c8a56SBarry Smith Mat_MPIDense *mat = (Mat_MPIDense *)A->data; 75d0f46423SBarry Smith PetscInt lrow, rstart = A->rmap->rstart, rend = A->rmap->rend; 76ba8c8a56SBarry Smith 77ba8c8a56SBarry Smith PetscFunctionBegin; 78aed4548fSBarry Smith PetscCheck(row >= rstart && row < rend, PETSC_COMM_SELF, PETSC_ERR_SUP, "only local rows"); 79ba8c8a56SBarry Smith lrow = row - rstart; 809566063dSJacob Faibussowitsch PetscCall(MatGetRow(mat->A, lrow, nz, (const PetscInt **)idx, (const PetscScalar **)v)); 813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 82ba8c8a56SBarry Smith } 83ba8c8a56SBarry Smith 8466976f2fSJacob Faibussowitsch static PetscErrorCode MatRestoreRow_MPIDense(Mat A, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 85d71ae5a4SJacob Faibussowitsch { 86637a0070SStefano Zampini Mat_MPIDense *mat = (Mat_MPIDense *)A->data; 87637a0070SStefano Zampini PetscInt lrow, rstart = A->rmap->rstart, rend = A->rmap->rend; 88ba8c8a56SBarry Smith 89ba8c8a56SBarry Smith PetscFunctionBegin; 90aed4548fSBarry Smith PetscCheck(row >= rstart && row < rend, PETSC_COMM_SELF, PETSC_ERR_SUP, "only local rows"); 91637a0070SStefano Zampini lrow = row - rstart; 929566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(mat->A, lrow, nz, (const PetscInt **)idx, (const PetscScalar **)v)); 933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 94ba8c8a56SBarry Smith } 95ba8c8a56SBarry Smith 9666976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonalBlock_MPIDense(Mat A, Mat *a) 97d71ae5a4SJacob Faibussowitsch { 980de54da6SSatish Balay Mat_MPIDense *mdn = (Mat_MPIDense *)A->data; 99d0f46423SBarry Smith PetscInt m = A->rmap->n, rstart = A->rmap->rstart; 10087828ca2SBarry Smith PetscScalar *array; 1010de54da6SSatish Balay MPI_Comm comm; 1024b6ae80fSStefano Zampini PetscBool flg; 10311bd1e4dSLisandro Dalcin Mat B; 1040de54da6SSatish Balay 1050de54da6SSatish Balay PetscFunctionBegin; 1069566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &flg)); 10728b400f6SJacob Faibussowitsch PetscCheck(flg, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only square matrices supported."); 1089566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)A, "DiagonalBlock", (PetscObject *)&B)); 109616b8fbbSStefano Zampini if (!B) { /* This should use MatDenseGetSubMatrix (not create), but we would need a call like MatRestoreDiagonalBlock */ 110a51cd166SPierre Jolivet #if PetscDefined(HAVE_CUDA) 1119566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)mdn->A, MATSEQDENSECUDA, &flg)); 11228b400f6SJacob Faibussowitsch PetscCheck(!flg, PETSC_COMM_SELF, PETSC_ERR_SUP, "Not coded for %s. Send an email to petsc-dev@mcs.anl.gov to request this feature", MATSEQDENSECUDA); 113a51cd166SPierre Jolivet #elif PetscDefined(HAVE_HIP) 11447d993e7Ssuyashtn PetscCall(PetscObjectTypeCompare((PetscObject)mdn->A, MATSEQDENSEHIP, &flg)); 11547d993e7Ssuyashtn PetscCheck(!flg, PETSC_COMM_SELF, PETSC_ERR_SUP, "Not coded for %s. Send an email to petsc-dev@mcs.anl.gov to request this feature", MATSEQDENSEHIP); 11647d993e7Ssuyashtn #endif 117f4f49eeaSPierre Jolivet PetscCall(PetscObjectGetComm((PetscObject)mdn->A, &comm)); 1189566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &B)); 1199566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, m, m, m, m)); 1209566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)mdn->A)->type_name)); 1219566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(mdn->A, (const PetscScalar **)&array)); 1229566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(B, array + m * rstart)); 1239566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(mdn->A, (const PetscScalar **)&array)); 1249566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)A, "DiagonalBlock", (PetscObject)B)); 12511bd1e4dSLisandro Dalcin *a = B; 1269566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 1272205254eSKarl Rupp } else *a = B; 1283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1290de54da6SSatish Balay } 1300de54da6SSatish Balay 13166976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValues_MPIDense(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], const PetscScalar v[], InsertMode addv) 132d71ae5a4SJacob Faibussowitsch { 13339b7565bSBarry Smith Mat_MPIDense *A = (Mat_MPIDense *)mat->data; 134d0f46423SBarry Smith PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend, row; 135ace3abfcSBarry Smith PetscBool roworiented = A->roworiented; 1368965ea79SLois Curfman McInnes 1373a40ed3dSBarry Smith PetscFunctionBegin; 1388965ea79SLois Curfman McInnes for (i = 0; i < m; i++) { 1395ef9f2a5SBarry Smith if (idxm[i] < 0) continue; 14008401ef6SPierre Jolivet PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large"); 1418965ea79SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 1428965ea79SLois Curfman McInnes row = idxm[i] - rstart; 14339b7565bSBarry Smith if (roworiented) { 144de0a9f35SPierre Jolivet PetscCall(MatSetValues(A->A, 1, &row, n, idxn, PetscSafePointerPlusOffset(v, i * n), addv)); 1453a40ed3dSBarry Smith } else { 1468965ea79SLois Curfman McInnes for (j = 0; j < n; j++) { 1475ef9f2a5SBarry Smith if (idxn[j] < 0) continue; 14808401ef6SPierre Jolivet PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large"); 149de0a9f35SPierre Jolivet PetscCall(MatSetValues(A->A, 1, &row, 1, &idxn[j], PetscSafePointerPlusOffset(v, i + j * m), addv)); 15039b7565bSBarry Smith } 1518965ea79SLois Curfman McInnes } 1522205254eSKarl Rupp } else if (!A->donotstash) { 1535080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 15439b7565bSBarry Smith if (roworiented) { 155de0a9f35SPierre Jolivet PetscCall(MatStashValuesRow_Private(&mat->stash, idxm[i], n, idxn, PetscSafePointerPlusOffset(v, i * n), PETSC_FALSE)); 156d36fbae8SSatish Balay } else { 157de0a9f35SPierre Jolivet PetscCall(MatStashValuesCol_Private(&mat->stash, idxm[i], n, idxn, PetscSafePointerPlusOffset(v, i), m, PETSC_FALSE)); 15839b7565bSBarry Smith } 159b49de8d1SLois Curfman McInnes } 160b49de8d1SLois Curfman McInnes } 1613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 162b49de8d1SLois Curfman McInnes } 163b49de8d1SLois Curfman McInnes 16466976f2fSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIDense(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 165d71ae5a4SJacob Faibussowitsch { 166b49de8d1SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 167d0f46423SBarry Smith PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend, row; 168b49de8d1SLois Curfman McInnes 1693a40ed3dSBarry Smith PetscFunctionBegin; 170b49de8d1SLois Curfman McInnes for (i = 0; i < m; i++) { 17154c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 17254c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large"); 173b49de8d1SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 174b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 175b49de8d1SLois Curfman McInnes for (j = 0; j < n; j++) { 17654c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 17754c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large"); 1789566063dSJacob Faibussowitsch PetscCall(MatGetValues(mdn->A, 1, &row, 1, &idxn[j], v + i * n + j)); 179b49de8d1SLois Curfman McInnes } 180e7e72b3dSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported"); 1818965ea79SLois Curfman McInnes } 1823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1838965ea79SLois Curfman McInnes } 1848965ea79SLois Curfman McInnes 185d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseGetLDA_MPIDense(Mat A, PetscInt *lda) 186d71ae5a4SJacob Faibussowitsch { 18749a6ff4bSBarry Smith Mat_MPIDense *a = (Mat_MPIDense *)A->data; 18849a6ff4bSBarry Smith 18949a6ff4bSBarry Smith PetscFunctionBegin; 1909566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, lda)); 1913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 19249a6ff4bSBarry Smith } 19349a6ff4bSBarry Smith 194d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseSetLDA_MPIDense(Mat A, PetscInt lda) 195d71ae5a4SJacob Faibussowitsch { 196ad16ce7aSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 19747d993e7Ssuyashtn MatType mtype = MATSEQDENSE; 198ad16ce7aSStefano Zampini 199ad16ce7aSStefano Zampini PetscFunctionBegin; 20017359960SJose E. Roman if (!a->A) { 20128b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 2029566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->rmap)); 2039566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->cmap)); 2049566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &a->A)); 2059566063dSJacob Faibussowitsch PetscCall(MatSetSizes(a->A, A->rmap->n, A->cmap->N, A->rmap->n, A->cmap->N)); 206a51cd166SPierre Jolivet #if PetscDefined(HAVE_CUDA) 20747d993e7Ssuyashtn PetscBool iscuda; 2089566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIDENSECUDA, &iscuda)); 20947d993e7Ssuyashtn if (iscuda) mtype = MATSEQDENSECUDA; 210a51cd166SPierre Jolivet #elif PetscDefined(HAVE_HIP) 21147d993e7Ssuyashtn PetscBool iship; 21247d993e7Ssuyashtn PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIDENSEHIP, &iship)); 21347d993e7Ssuyashtn if (iship) mtype = MATSEQDENSEHIP; 21447d993e7Ssuyashtn #endif 21547d993e7Ssuyashtn PetscCall(MatSetType(a->A, mtype)); 21617359960SJose E. Roman } 2179566063dSJacob Faibussowitsch PetscCall(MatDenseSetLDA(a->A, lda)); 2183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 219ad16ce7aSStefano Zampini } 220ad16ce7aSStefano Zampini 221d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseGetArray_MPIDense(Mat A, PetscScalar **array) 222d71ae5a4SJacob Faibussowitsch { 223ff14e315SSatish Balay Mat_MPIDense *a = (Mat_MPIDense *)A->data; 224ff14e315SSatish Balay 2253a40ed3dSBarry Smith PetscFunctionBegin; 22628b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 2279566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(a->A, array)); 2283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 229ff14e315SSatish Balay } 230ff14e315SSatish Balay 231f1e99121SPierre Jolivet static PetscErrorCode MatDenseGetArrayRead_MPIDense(Mat A, PetscScalar **array) 232d71ae5a4SJacob Faibussowitsch { 2338572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense *)A->data; 2348572280aSBarry Smith 2358572280aSBarry Smith PetscFunctionBegin; 23628b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 237f1e99121SPierre Jolivet PetscCall(MatDenseGetArrayRead(a->A, (const PetscScalar **)array)); 2383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2398572280aSBarry Smith } 2408572280aSBarry Smith 241d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseGetArrayWrite_MPIDense(Mat A, PetscScalar **array) 242d71ae5a4SJacob Faibussowitsch { 2436947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 2446947451fSStefano Zampini 2456947451fSStefano Zampini PetscFunctionBegin; 24628b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 2479566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(a->A, array)); 2483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2496947451fSStefano Zampini } 2506947451fSStefano Zampini 251d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDensePlaceArray_MPIDense(Mat A, const PetscScalar *array) 252d71ae5a4SJacob Faibussowitsch { 253d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense *)A->data; 254d3042a70SBarry Smith 255d3042a70SBarry Smith PetscFunctionBegin; 25628b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 25728b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 2589566063dSJacob Faibussowitsch PetscCall(MatDensePlaceArray(a->A, array)); 2593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 260d3042a70SBarry Smith } 261d3042a70SBarry Smith 262d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseResetArray_MPIDense(Mat A) 263d71ae5a4SJacob Faibussowitsch { 264d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense *)A->data; 265d3042a70SBarry Smith 266d3042a70SBarry Smith PetscFunctionBegin; 26728b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 26828b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 2699566063dSJacob Faibussowitsch PetscCall(MatDenseResetArray(a->A)); 2703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 271d3042a70SBarry Smith } 272d3042a70SBarry Smith 273d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseReplaceArray_MPIDense(Mat A, const PetscScalar *array) 274d71ae5a4SJacob Faibussowitsch { 275d5ea218eSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 276d5ea218eSStefano Zampini 277d5ea218eSStefano Zampini PetscFunctionBegin; 27828b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 27928b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 2809566063dSJacob Faibussowitsch PetscCall(MatDenseReplaceArray(a->A, array)); 2813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 282d5ea218eSStefano Zampini } 283d5ea218eSStefano Zampini 284d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrix_MPIDense(Mat A, IS isrow, IS iscol, MatReuse scall, Mat *B) 285d71ae5a4SJacob Faibussowitsch { 286ca3fa75bSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense *)A->data, *newmatd; 287637a0070SStefano Zampini PetscInt lda, i, j, rstart, rend, nrows, ncols, Ncols, nlrows, nlcols; 2885d0c19d7SBarry Smith const PetscInt *irow, *icol; 289637a0070SStefano Zampini const PetscScalar *v; 290637a0070SStefano Zampini PetscScalar *bv; 291ca3fa75bSLois Curfman McInnes Mat newmat; 2924aa3045dSJed Brown IS iscol_local; 29342a884f0SBarry Smith MPI_Comm comm_is, comm_mat; 294ca3fa75bSLois Curfman McInnes 295ca3fa75bSLois Curfman McInnes PetscFunctionBegin; 2969566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm_mat)); 2979566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)iscol, &comm_is)); 29808401ef6SPierre Jolivet PetscCheck(comm_mat == comm_is, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "IS communicator must match matrix communicator"); 29942a884f0SBarry Smith 3009566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol, &iscol_local)); 3019566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isrow, &irow)); 3029566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_local, &icol)); 3039566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &nrows)); 3049566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &ncols)); 3059566063dSJacob Faibussowitsch PetscCall(ISGetSize(iscol, &Ncols)); /* global number of columns, size of iscol_local */ 306ca3fa75bSLois Curfman McInnes 307ca3fa75bSLois Curfman McInnes /* No parallel redistribution currently supported! Should really check each index set 308da81f932SPierre Jolivet to confirm that it is OK. ... Currently supports only submatrix same partitioning as 3097eba5e9cSLois Curfman McInnes original matrix! */ 310ca3fa75bSLois Curfman McInnes 3119566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, &nlrows, &nlcols)); 3129566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, &rend)); 313ca3fa75bSLois Curfman McInnes 314ca3fa75bSLois Curfman McInnes /* Check submatrix call */ 315ca3fa75bSLois Curfman McInnes if (scall == MAT_REUSE_MATRIX) { 316e32f2f54SBarry Smith /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */ 3177eba5e9cSLois Curfman McInnes /* Really need to test rows and column sizes! */ 318ca3fa75bSLois Curfman McInnes newmat = *B; 319ca3fa75bSLois Curfman McInnes } else { 320ca3fa75bSLois Curfman McInnes /* Create and fill new matrix */ 3219566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &newmat)); 3229566063dSJacob Faibussowitsch PetscCall(MatSetSizes(newmat, nrows, ncols, PETSC_DECIDE, Ncols)); 3239566063dSJacob Faibussowitsch PetscCall(MatSetType(newmat, ((PetscObject)A)->type_name)); 3249566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(newmat, NULL)); 325ca3fa75bSLois Curfman McInnes } 326ca3fa75bSLois Curfman McInnes 327ca3fa75bSLois Curfman McInnes /* Now extract the data pointers and do the copy, column at a time */ 328ca3fa75bSLois Curfman McInnes newmatd = (Mat_MPIDense *)newmat->data; 3299566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(newmatd->A, &bv)); 3309566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(mat->A, &v)); 3319566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(mat->A, &lda)); 3324aa3045dSJed Brown for (i = 0; i < Ncols; i++) { 333637a0070SStefano Zampini const PetscScalar *av = v + lda * icol[i]; 334ad540459SPierre Jolivet for (j = 0; j < nrows; j++) *bv++ = av[irow[j] - rstart]; 335ca3fa75bSLois Curfman McInnes } 3369566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(mat->A, &v)); 3379566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(newmatd->A, &bv)); 338ca3fa75bSLois Curfman McInnes 339ca3fa75bSLois Curfman McInnes /* Assemble the matrices so that the correct flags are set */ 3409566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(newmat, MAT_FINAL_ASSEMBLY)); 3419566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(newmat, MAT_FINAL_ASSEMBLY)); 342ca3fa75bSLois Curfman McInnes 343ca3fa75bSLois Curfman McInnes /* Free work space */ 3449566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isrow, &irow)); 3459566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_local, &icol)); 3469566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 347ca3fa75bSLois Curfman McInnes *B = newmat; 3483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 349ca3fa75bSLois Curfman McInnes } 350ca3fa75bSLois Curfman McInnes 35166976f2fSJacob Faibussowitsch static PetscErrorCode MatDenseRestoreArray_MPIDense(Mat A, PetscScalar **array) 352d71ae5a4SJacob Faibussowitsch { 35373a71a0fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense *)A->data; 35473a71a0fSBarry Smith 3553a40ed3dSBarry Smith PetscFunctionBegin; 3569566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(a->A, array)); 3573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 358ff14e315SSatish Balay } 359ff14e315SSatish Balay 360f1e99121SPierre Jolivet static PetscErrorCode MatDenseRestoreArrayRead_MPIDense(Mat A, PetscScalar **array) 361d71ae5a4SJacob Faibussowitsch { 3628572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense *)A->data; 3638572280aSBarry Smith 3648572280aSBarry Smith PetscFunctionBegin; 365f1e99121SPierre Jolivet PetscCall(MatDenseRestoreArrayRead(a->A, (const PetscScalar **)array)); 3663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3678572280aSBarry Smith } 3688572280aSBarry Smith 36966976f2fSJacob Faibussowitsch static PetscErrorCode MatDenseRestoreArrayWrite_MPIDense(Mat A, PetscScalar **array) 370d71ae5a4SJacob Faibussowitsch { 3716947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 3726947451fSStefano Zampini 3736947451fSStefano Zampini PetscFunctionBegin; 3749566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(a->A, array)); 3753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3766947451fSStefano Zampini } 3776947451fSStefano Zampini 37866976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat, MatAssemblyType mode) 379d71ae5a4SJacob Faibussowitsch { 38039ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 38113f74950SBarry Smith PetscInt nstash, reallocs; 3828965ea79SLois Curfman McInnes 3833a40ed3dSBarry Smith PetscFunctionBegin; 3843ba16761SJacob Faibussowitsch if (mdn->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS); 3858965ea79SLois Curfman McInnes 3869566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 3879566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 3889566063dSJacob Faibussowitsch PetscCall(PetscInfo(mdn->A, "Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 3893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3908965ea79SLois Curfman McInnes } 3918965ea79SLois Curfman McInnes 39266976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat, MatAssemblyType mode) 393d71ae5a4SJacob Faibussowitsch { 39439ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 39513f74950SBarry Smith PetscInt i, *row, *col, flg, j, rstart, ncols; 39613f74950SBarry Smith PetscMPIInt n; 39787828ca2SBarry Smith PetscScalar *val; 3988965ea79SLois Curfman McInnes 3993a40ed3dSBarry Smith PetscFunctionBegin; 400910cf402Sprj- if (!mdn->donotstash && !mat->nooffprocentries) { 4018965ea79SLois Curfman McInnes /* wait on receives */ 4027ef1d9bdSSatish Balay while (1) { 4039566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 4047ef1d9bdSSatish Balay if (!flg) break; 4058965ea79SLois Curfman McInnes 4067ef1d9bdSSatish Balay for (i = 0; i < n;) { 4077ef1d9bdSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 4082205254eSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 4092205254eSKarl Rupp if (row[j] != rstart) break; 4102205254eSKarl Rupp } 4117ef1d9bdSSatish Balay if (j < n) ncols = j - i; 4127ef1d9bdSSatish Balay else ncols = n - i; 4137ef1d9bdSSatish Balay /* Now assemble all these values with a single function call */ 4149566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIDense(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode)); 4157ef1d9bdSSatish Balay i = j; 4168965ea79SLois Curfman McInnes } 4177ef1d9bdSSatish Balay } 4189566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 419910cf402Sprj- } 4208965ea79SLois Curfman McInnes 4219566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mdn->A, mode)); 4229566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mdn->A, mode)); 4233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4248965ea79SLois Curfman McInnes } 4258965ea79SLois Curfman McInnes 42666976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIDense(Mat A) 427d71ae5a4SJacob Faibussowitsch { 42839ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense *)A->data; 4293a40ed3dSBarry Smith 4303a40ed3dSBarry Smith PetscFunctionBegin; 4319566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 4323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4338965ea79SLois Curfman McInnes } 4348965ea79SLois Curfman McInnes 43566976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIDense(Mat A, PetscInt n, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 436d71ae5a4SJacob Faibussowitsch { 43739ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense *)A->data; 438637a0070SStefano Zampini PetscInt i, len, *lrows; 439637a0070SStefano Zampini 440637a0070SStefano Zampini PetscFunctionBegin; 441637a0070SStefano Zampini /* get locally owned rows */ 4429566063dSJacob Faibussowitsch PetscCall(PetscLayoutMapLocal(A->rmap, n, rows, &len, &lrows, NULL)); 443dd8e379bSPierre Jolivet /* fix right-hand side if needed */ 444637a0070SStefano Zampini if (x && b) { 44597b48c8fSBarry Smith const PetscScalar *xx; 44697b48c8fSBarry Smith PetscScalar *bb; 4478965ea79SLois Curfman McInnes 4489566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 4499566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(b, &bb)); 450637a0070SStefano Zampini for (i = 0; i < len; ++i) bb[lrows[i]] = diag * xx[lrows[i]]; 4519566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 4529566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(b, &bb)); 45397b48c8fSBarry Smith } 4549566063dSJacob Faibussowitsch PetscCall(MatZeroRows(l->A, len, lrows, 0.0, NULL, NULL)); 455e2eb51b1SBarry Smith if (diag != 0.0) { 456637a0070SStefano Zampini Vec d; 457b9679d65SBarry Smith 4589566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(A, NULL, &d)); 4599566063dSJacob Faibussowitsch PetscCall(VecSet(d, diag)); 4609566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet(A, d, INSERT_VALUES)); 4619566063dSJacob Faibussowitsch PetscCall(VecDestroy(&d)); 462b9679d65SBarry Smith } 4639566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 4643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4658965ea79SLois Curfman McInnes } 4668965ea79SLois Curfman McInnes 4670be0d8bdSHansol Suh PETSC_INTERN PetscErrorCode MatMult_SeqDense(Mat, Vec, Vec); 4680be0d8bdSHansol Suh PETSC_INTERN PetscErrorCode MatMultAdd_SeqDense(Mat, Vec, Vec, Vec); 4690be0d8bdSHansol Suh PETSC_INTERN PetscErrorCode MatMultTranspose_SeqDense(Mat, Vec, Vec); 4700be0d8bdSHansol Suh PETSC_INTERN PetscErrorCode MatMultTransposeAdd_SeqDense(Mat, Vec, Vec, Vec); 4710be0d8bdSHansol Suh 47266976f2fSJacob Faibussowitsch static PetscErrorCode MatMult_MPIDense(Mat mat, Vec xx, Vec yy) 473d71ae5a4SJacob Faibussowitsch { 47439ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 475637a0070SStefano Zampini const PetscScalar *ax; 476637a0070SStefano Zampini PetscScalar *ay; 477d0295fc0SJunchao Zhang PetscMemType axmtype, aymtype; 478c456f294SBarry Smith 4793a40ed3dSBarry Smith PetscFunctionBegin; 4806f08ad05SPierre Jolivet if (!mdn->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(mat)); 4819566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(xx, &ax, &axmtype)); 4829566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(mdn->lvec, &ay, &aymtype)); 4839566063dSJacob Faibussowitsch PetscCall(PetscSFBcastWithMemTypeBegin(mdn->Mvctx, MPIU_SCALAR, axmtype, ax, aymtype, ay, MPI_REPLACE)); 4849566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(mdn->Mvctx, MPIU_SCALAR, ax, ay, MPI_REPLACE)); 4859566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(mdn->lvec, &ay)); 4869566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(xx, &ax)); 4879566063dSJacob Faibussowitsch PetscCall((*mdn->A->ops->mult)(mdn->A, mdn->lvec, yy)); 4883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4898965ea79SLois Curfman McInnes } 4908965ea79SLois Curfman McInnes 4910be0d8bdSHansol Suh static PetscErrorCode MatMultAddColumnRange_MPIDense(Mat mat, Vec xx, Vec yy, Vec zz, PetscInt c_start, PetscInt c_end) 4920be0d8bdSHansol Suh { 4930be0d8bdSHansol Suh Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 4940be0d8bdSHansol Suh const PetscScalar *ax; 4950be0d8bdSHansol Suh PetscScalar *ay; 4960be0d8bdSHansol Suh PetscMemType axmtype, aymtype; 4970be0d8bdSHansol Suh 4980be0d8bdSHansol Suh PetscFunctionBegin; 4990be0d8bdSHansol Suh if (!mdn->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(mat)); 5000be0d8bdSHansol Suh PetscCall(VecGetArrayReadAndMemType(xx, &ax, &axmtype)); 5010be0d8bdSHansol Suh PetscCall(VecGetArrayAndMemType(mdn->lvec, &ay, &aymtype)); 5020be0d8bdSHansol Suh PetscCall(PetscSFBcastWithMemTypeBegin(mdn->Mvctx, MPIU_SCALAR, axmtype, ax, aymtype, ay, MPI_REPLACE)); 5030be0d8bdSHansol Suh PetscCall(PetscSFBcastEnd(mdn->Mvctx, MPIU_SCALAR, ax, ay, MPI_REPLACE)); 5040be0d8bdSHansol Suh PetscCall(VecRestoreArrayAndMemType(mdn->lvec, &ay)); 5050be0d8bdSHansol Suh PetscCall(VecRestoreArrayReadAndMemType(xx, &ax)); 5060be0d8bdSHansol Suh PetscUseMethod(mdn->A, "MatMultAddColumnRange_C", (Mat, Vec, Vec, Vec, PetscInt, PetscInt), (mdn->A, mdn->lvec, yy, zz, c_start, c_end)); 5070be0d8bdSHansol Suh PetscFunctionReturn(PETSC_SUCCESS); 5080be0d8bdSHansol Suh } 5090be0d8bdSHansol Suh 51066976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIDense(Mat mat, Vec xx, Vec yy, Vec zz) 511d71ae5a4SJacob Faibussowitsch { 51239ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 513637a0070SStefano Zampini const PetscScalar *ax; 514637a0070SStefano Zampini PetscScalar *ay; 515d0295fc0SJunchao Zhang PetscMemType axmtype, aymtype; 516c456f294SBarry Smith 5173a40ed3dSBarry Smith PetscFunctionBegin; 5186f08ad05SPierre Jolivet if (!mdn->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(mat)); 5199566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(xx, &ax, &axmtype)); 5209566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(mdn->lvec, &ay, &aymtype)); 5219566063dSJacob Faibussowitsch PetscCall(PetscSFBcastWithMemTypeBegin(mdn->Mvctx, MPIU_SCALAR, axmtype, ax, aymtype, ay, MPI_REPLACE)); 5229566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(mdn->Mvctx, MPIU_SCALAR, ax, ay, MPI_REPLACE)); 5239566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(mdn->lvec, &ay)); 5249566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(xx, &ax)); 5259566063dSJacob Faibussowitsch PetscCall((*mdn->A->ops->multadd)(mdn->A, mdn->lvec, yy, zz)); 5263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5278965ea79SLois Curfman McInnes } 5288965ea79SLois Curfman McInnes 5290be0d8bdSHansol Suh static PetscErrorCode MatMultHermitianTransposeColumnRange_MPIDense(Mat A, Vec xx, Vec yy, PetscInt c_start, PetscInt c_end) 5300be0d8bdSHansol Suh { 5310be0d8bdSHansol Suh Mat_MPIDense *a = (Mat_MPIDense *)A->data; 5320be0d8bdSHansol Suh const PetscScalar *ax; 5330be0d8bdSHansol Suh PetscScalar *ay; 5340be0d8bdSHansol Suh PetscMemType axmtype, aymtype; 5350be0d8bdSHansol Suh 5360be0d8bdSHansol Suh PetscFunctionBegin; 5370be0d8bdSHansol Suh if (!a->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); 5380be0d8bdSHansol Suh PetscCall(VecSet(yy, 0.0)); 5390be0d8bdSHansol Suh PetscUseMethod(a->A, "MatMultHermitianTransposeColumnRange_C", (Mat, Vec, Vec, PetscInt, PetscInt), (a->A, xx, a->lvec, c_start, c_end)); 5400be0d8bdSHansol Suh PetscCall(VecGetArrayReadAndMemType(a->lvec, &ax, &axmtype)); 5410be0d8bdSHansol Suh PetscCall(VecGetArrayAndMemType(yy, &ay, &aymtype)); 5420be0d8bdSHansol Suh PetscCall(PetscSFReduceWithMemTypeBegin(a->Mvctx, MPIU_SCALAR, axmtype, ax, aymtype, ay, MPIU_SUM)); 5430be0d8bdSHansol Suh PetscCall(PetscSFReduceEnd(a->Mvctx, MPIU_SCALAR, ax, ay, MPIU_SUM)); 5440be0d8bdSHansol Suh PetscCall(VecRestoreArrayReadAndMemType(a->lvec, &ax)); 5450be0d8bdSHansol Suh PetscCall(VecRestoreArrayAndMemType(yy, &ay)); 5460be0d8bdSHansol Suh PetscFunctionReturn(PETSC_SUCCESS); 5470be0d8bdSHansol Suh } 5480be0d8bdSHansol Suh 549459e8d23SBlanca Mellado Pinto static PetscErrorCode MatMultTransposeKernel_MPIDense(Mat A, Vec xx, Vec yy, PetscBool herm) 550d71ae5a4SJacob Faibussowitsch { 551096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense *)A->data; 552637a0070SStefano Zampini const PetscScalar *ax; 553637a0070SStefano Zampini PetscScalar *ay; 554d0295fc0SJunchao Zhang PetscMemType axmtype, aymtype; 5554d86920dSPierre Jolivet 5563a40ed3dSBarry Smith PetscFunctionBegin; 5576f08ad05SPierre Jolivet if (!a->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); 5589566063dSJacob Faibussowitsch PetscCall(VecSet(yy, 0.0)); 559459e8d23SBlanca Mellado Pinto if (herm) PetscCall((*a->A->ops->multhermitiantranspose)(a->A, xx, a->lvec)); 560459e8d23SBlanca Mellado Pinto else PetscCall((*a->A->ops->multtranspose)(a->A, xx, a->lvec)); 5619566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(a->lvec, &ax, &axmtype)); 5629566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(yy, &ay, &aymtype)); 5639566063dSJacob Faibussowitsch PetscCall(PetscSFReduceWithMemTypeBegin(a->Mvctx, MPIU_SCALAR, axmtype, ax, aymtype, ay, MPIU_SUM)); 5649566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(a->Mvctx, MPIU_SCALAR, ax, ay, MPIU_SUM)); 5659566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(a->lvec, &ax)); 5669566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(yy, &ay)); 5673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 568096963f5SLois Curfman McInnes } 569096963f5SLois Curfman McInnes 5700be0d8bdSHansol Suh static PetscErrorCode MatMultHermitianTransposeAddColumnRange_MPIDense(Mat A, Vec xx, Vec yy, Vec zz, PetscInt c_start, PetscInt c_end) 5710be0d8bdSHansol Suh { 5720be0d8bdSHansol Suh Mat_MPIDense *a = (Mat_MPIDense *)A->data; 5730be0d8bdSHansol Suh const PetscScalar *ax; 5740be0d8bdSHansol Suh PetscScalar *ay; 5750be0d8bdSHansol Suh PetscMemType axmtype, aymtype; 5760be0d8bdSHansol Suh 5770be0d8bdSHansol Suh PetscFunctionBegin; 5780be0d8bdSHansol Suh if (!a->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); 5790be0d8bdSHansol Suh PetscCall(VecCopy(yy, zz)); 5800be0d8bdSHansol Suh PetscMPIInt rank; 5810be0d8bdSHansol Suh PetscCallMPI(MPI_Comm_rank(MPI_COMM_WORLD, &rank)); 5820be0d8bdSHansol Suh PetscUseMethod(a->A, "MatMultHermitianTransposeColumnRange_C", (Mat, Vec, Vec, PetscInt, PetscInt), (a->A, xx, a->lvec, c_start, c_end)); 5830be0d8bdSHansol Suh PetscCall(VecGetArrayReadAndMemType(a->lvec, &ax, &axmtype)); 5840be0d8bdSHansol Suh PetscCall(VecGetArrayAndMemType(zz, &ay, &aymtype)); 5850be0d8bdSHansol Suh PetscCall(PetscSFReduceWithMemTypeBegin(a->Mvctx, MPIU_SCALAR, axmtype, ax, aymtype, ay, MPIU_SUM)); 5860be0d8bdSHansol Suh PetscCall(PetscSFReduceEnd(a->Mvctx, MPIU_SCALAR, ax, ay, MPIU_SUM)); 5870be0d8bdSHansol Suh PetscCall(VecRestoreArrayReadAndMemType(a->lvec, &ax)); 5880be0d8bdSHansol Suh PetscCall(VecRestoreArrayAndMemType(zz, &ay)); 5890be0d8bdSHansol Suh PetscFunctionReturn(PETSC_SUCCESS); 5900be0d8bdSHansol Suh } 5910be0d8bdSHansol Suh 592459e8d23SBlanca Mellado Pinto static PetscErrorCode MatMultTransposeAddKernel_MPIDense(Mat A, Vec xx, Vec yy, Vec zz, PetscBool herm) 593d71ae5a4SJacob Faibussowitsch { 594096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense *)A->data; 595637a0070SStefano Zampini const PetscScalar *ax; 596637a0070SStefano Zampini PetscScalar *ay; 597d0295fc0SJunchao Zhang PetscMemType axmtype, aymtype; 598096963f5SLois Curfman McInnes 5993a40ed3dSBarry Smith PetscFunctionBegin; 6006f08ad05SPierre Jolivet if (!a->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); 6019566063dSJacob Faibussowitsch PetscCall(VecCopy(yy, zz)); 602459e8d23SBlanca Mellado Pinto if (herm) PetscCall((*a->A->ops->multhermitiantranspose)(a->A, xx, a->lvec)); 603459e8d23SBlanca Mellado Pinto else PetscCall((*a->A->ops->multtranspose)(a->A, xx, a->lvec)); 6049566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(a->lvec, &ax, &axmtype)); 6059566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(zz, &ay, &aymtype)); 6069566063dSJacob Faibussowitsch PetscCall(PetscSFReduceWithMemTypeBegin(a->Mvctx, MPIU_SCALAR, axmtype, ax, aymtype, ay, MPIU_SUM)); 6079566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(a->Mvctx, MPIU_SCALAR, ax, ay, MPIU_SUM)); 6089566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(a->lvec, &ax)); 6099566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(zz, &ay)); 6103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 611096963f5SLois Curfman McInnes } 612096963f5SLois Curfman McInnes 613459e8d23SBlanca Mellado Pinto static PetscErrorCode MatMultTranspose_MPIDense(Mat A, Vec xx, Vec yy) 614459e8d23SBlanca Mellado Pinto { 615459e8d23SBlanca Mellado Pinto PetscFunctionBegin; 616459e8d23SBlanca Mellado Pinto PetscCall(MatMultTransposeKernel_MPIDense(A, xx, yy, PETSC_FALSE)); 617459e8d23SBlanca Mellado Pinto PetscFunctionReturn(PETSC_SUCCESS); 618459e8d23SBlanca Mellado Pinto } 619459e8d23SBlanca Mellado Pinto 620459e8d23SBlanca Mellado Pinto static PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A, Vec xx, Vec yy, Vec zz) 621459e8d23SBlanca Mellado Pinto { 622459e8d23SBlanca Mellado Pinto PetscFunctionBegin; 623459e8d23SBlanca Mellado Pinto PetscCall(MatMultTransposeAddKernel_MPIDense(A, xx, yy, zz, PETSC_FALSE)); 624459e8d23SBlanca Mellado Pinto PetscFunctionReturn(PETSC_SUCCESS); 625459e8d23SBlanca Mellado Pinto } 626459e8d23SBlanca Mellado Pinto 627459e8d23SBlanca Mellado Pinto static PetscErrorCode MatMultHermitianTranspose_MPIDense(Mat A, Vec xx, Vec yy) 628459e8d23SBlanca Mellado Pinto { 629459e8d23SBlanca Mellado Pinto PetscFunctionBegin; 630459e8d23SBlanca Mellado Pinto PetscCall(MatMultTransposeKernel_MPIDense(A, xx, yy, PETSC_TRUE)); 631459e8d23SBlanca Mellado Pinto PetscFunctionReturn(PETSC_SUCCESS); 632459e8d23SBlanca Mellado Pinto } 633459e8d23SBlanca Mellado Pinto 634459e8d23SBlanca Mellado Pinto static PetscErrorCode MatMultHermitianTransposeAdd_MPIDense(Mat A, Vec xx, Vec yy, Vec zz) 635459e8d23SBlanca Mellado Pinto { 636459e8d23SBlanca Mellado Pinto PetscFunctionBegin; 637459e8d23SBlanca Mellado Pinto PetscCall(MatMultTransposeAddKernel_MPIDense(A, xx, yy, zz, PETSC_TRUE)); 638459e8d23SBlanca Mellado Pinto PetscFunctionReturn(PETSC_SUCCESS); 639459e8d23SBlanca Mellado Pinto } 640459e8d23SBlanca Mellado Pinto 641d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetDiagonal_MPIDense(Mat A, Vec v) 642d71ae5a4SJacob Faibussowitsch { 64339ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense *)A->data; 64479560b15SJacob Faibussowitsch PetscInt lda, len, i, nl, ng, m = A->rmap->n, radd; 64579560b15SJacob Faibussowitsch PetscScalar *x; 646637a0070SStefano Zampini const PetscScalar *av; 647ed3cc1f0SBarry Smith 6483a40ed3dSBarry Smith PetscFunctionBegin; 6499566063dSJacob Faibussowitsch PetscCall(VecGetArray(v, &x)); 65079560b15SJacob Faibussowitsch PetscCall(VecGetSize(v, &ng)); 65179560b15SJacob Faibussowitsch PetscCheck(ng == A->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Nonconforming mat and vec"); 65279560b15SJacob Faibussowitsch PetscCall(VecGetLocalSize(v, &nl)); 653d0f46423SBarry Smith len = PetscMin(a->A->rmap->n, a->A->cmap->n); 654d0f46423SBarry Smith radd = A->rmap->rstart * m; 6559566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A, &av)); 6569566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &lda)); 657ad540459SPierre Jolivet for (i = 0; i < len; i++) x[i] = av[radd + i * lda + i]; 6589566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A, &av)); 6590be0d8bdSHansol Suh if (nl - i > 0) PetscCall(PetscArrayzero(x + i, nl - i)); 6609566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v, &x)); 6613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6628965ea79SLois Curfman McInnes } 6638965ea79SLois Curfman McInnes 66466976f2fSJacob Faibussowitsch static PetscErrorCode MatDestroy_MPIDense(Mat mat) 665d71ae5a4SJacob Faibussowitsch { 6663501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 667ed3cc1f0SBarry Smith 6683a40ed3dSBarry Smith PetscFunctionBegin; 6693ba16761SJacob Faibussowitsch PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N)); 6709566063dSJacob Faibussowitsch PetscCall(MatStashDestroy_Private(&mat->stash)); 67128b400f6SJacob Faibussowitsch PetscCheck(!mdn->vecinuse, PetscObjectComm((PetscObject)mat), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 67228b400f6SJacob Faibussowitsch PetscCheck(!mdn->matinuse, PetscObjectComm((PetscObject)mat), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 6739566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mdn->A)); 6749566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mdn->lvec)); 6759566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&mdn->Mvctx)); 6769566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mdn->cvec)); 6779566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mdn->cmat)); 67801b82886SBarry Smith 6799566063dSJacob Faibussowitsch PetscCall(PetscFree(mat->data)); 6809566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 6818baccfbdSHong Zhang 6829566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetLDA_C", NULL)); 6839566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseSetLDA_C", NULL)); 6849566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetArray_C", NULL)); 6859566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreArray_C", NULL)); 6869566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetArrayRead_C", NULL)); 6879566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreArrayRead_C", NULL)); 6889566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetArrayWrite_C", NULL)); 6899566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreArrayWrite_C", NULL)); 6909566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDensePlaceArray_C", NULL)); 6919566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseResetArray_C", NULL)); 6929566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseReplaceArray_C", NULL)); 6939566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpidense_C", NULL)); 6949566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_mpiaij_C", NULL)); 6958baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 6969566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_elemental_C", NULL)); 6978baccfbdSHong Zhang #endif 698d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 6999566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_scalapack_C", NULL)); 700d24d4204SJose E. Roman #endif 7019566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIDenseSetPreallocation_C", NULL)); 7029566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpidense_C", NULL)); 7039566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidense_mpiaij_C", NULL)); 7046718818eSStefano Zampini #if defined(PETSC_HAVE_CUDA) 7059566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaijcusparse_mpidense_C", NULL)); 7069566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidense_mpiaijcusparse_C", NULL)); 7072e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_mpidensecuda_C", NULL)); 7082e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidensecuda_mpidense_C", NULL)); 7092e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpidensecuda_C", NULL)); 7102e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaijcusparse_mpidensecuda_C", NULL)); 7112e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidensecuda_mpiaij_C", NULL)); 7122e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidensecuda_mpiaijcusparse_C", NULL)); 7132e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDAGetArray_C", NULL)); 7142e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDAGetArrayRead_C", NULL)); 7152e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDAGetArrayWrite_C", NULL)); 7162e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDARestoreArray_C", NULL)); 7172e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDARestoreArrayRead_C", NULL)); 7182e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDARestoreArrayWrite_C", NULL)); 7192e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDAPlaceArray_C", NULL)); 7202e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDAResetArray_C", NULL)); 7212e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDAReplaceArray_C", NULL)); 7223d9668e3SJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDASetPreallocation_C", NULL)); 7236718818eSStefano Zampini #endif 72447d993e7Ssuyashtn #if defined(PETSC_HAVE_HIP) 72547d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaijhipsparse_mpidense_C", NULL)); 72647d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidense_mpiaijhipsparse_C", NULL)); 72747d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_mpidensehip_C", NULL)); 72847d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidensehip_mpidense_C", NULL)); 72947d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpidensehip_C", NULL)); 73047d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaijhipsparse_mpidensehip_C", NULL)); 73147d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidensehip_mpiaij_C", NULL)); 73247d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidensehip_mpiaijhipsparse_C", NULL)); 73347d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPGetArray_C", NULL)); 73447d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPGetArrayRead_C", NULL)); 73547d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPGetArrayWrite_C", NULL)); 73647d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPRestoreArray_C", NULL)); 73747d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPRestoreArrayRead_C", NULL)); 73847d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPRestoreArrayWrite_C", NULL)); 73947d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPPlaceArray_C", NULL)); 74047d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPResetArray_C", NULL)); 74147d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPReplaceArray_C", NULL)); 7423d9668e3SJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPSetPreallocation_C", NULL)); 74347d993e7Ssuyashtn #endif 7449566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumn_C", NULL)); 7459566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumn_C", NULL)); 7469566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVec_C", NULL)); 7479566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVec_C", NULL)); 7489566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVecRead_C", NULL)); 7499566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVecRead_C", NULL)); 7509566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVecWrite_C", NULL)); 7519566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVecWrite_C", NULL)); 7529566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetSubMatrix_C", NULL)); 7539566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreSubMatrix_C", NULL)); 7540be0d8bdSHansol Suh PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMultAddColumnRange_C", NULL)); 7550be0d8bdSHansol Suh PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMultHermitianTransposeColumnRange_C", NULL)); 7560be0d8bdSHansol Suh PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMultHermitianTransposeAddColumnRange_C", NULL)); 757f8103e6bSStefano Zampini 758f8103e6bSStefano Zampini PetscCall(PetscObjectCompose((PetscObject)mat, "DiagonalBlock", NULL)); 7593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7608965ea79SLois Curfman McInnes } 76139ddd567SLois Curfman McInnes 7629804daf3SBarry Smith #include <petscdraw.h> 763d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) 764d71ae5a4SJacob Faibussowitsch { 76539ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 766616b8fbbSStefano Zampini PetscMPIInt rank; 76719fd82e9SBarry Smith PetscViewerType vtype; 768ace3abfcSBarry Smith PetscBool iascii, isdraw; 769b0a32e0cSBarry Smith PetscViewer sviewer; 770f3ef73ceSBarry Smith PetscViewerFormat format; 7718965ea79SLois Curfman McInnes 7723a40ed3dSBarry Smith PetscFunctionBegin; 7739566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 7749566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 7759566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 77632077d6dSBarry Smith if (iascii) { 7779566063dSJacob Faibussowitsch PetscCall(PetscViewerGetType(viewer, &vtype)); 7789566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 779456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 7804e220ebcSLois Curfman McInnes MatInfo info; 7819566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 7829566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 7839371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, " [%d] local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %" PetscInt_FMT " \n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 7849371c9d4SSatish Balay (PetscInt)info.memory)); 7859566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 7869566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 7876f08ad05SPierre Jolivet if (mdn->Mvctx) PetscCall(PetscSFView(mdn->Mvctx, viewer)); 7883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 789fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 7903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7918965ea79SLois Curfman McInnes } 792f1af5d2fSBarry Smith } else if (isdraw) { 793b0a32e0cSBarry Smith PetscDraw draw; 794ace3abfcSBarry Smith PetscBool isnull; 795f1af5d2fSBarry Smith 7969566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 7979566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 7983ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 799f1af5d2fSBarry Smith } 80077ed5343SBarry Smith 8017da1fb6eSBarry Smith { 8028965ea79SLois Curfman McInnes /* assemble the entire matrix onto first processor. */ 8038965ea79SLois Curfman McInnes Mat A; 804d0f46423SBarry Smith PetscInt M = mat->rmap->N, N = mat->cmap->N, m, row, i, nz; 805ba8c8a56SBarry Smith PetscInt *cols; 806ba8c8a56SBarry Smith PetscScalar *vals; 8078965ea79SLois Curfman McInnes 8089566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A)); 809dd400576SPatrick Sanan if (rank == 0) { 8109566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, M, N, M, N)); 8113a40ed3dSBarry Smith } else { 8129566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, 0, 0, M, N)); 8138965ea79SLois Curfman McInnes } 8147adad957SLisandro Dalcin /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */ 8159566063dSJacob Faibussowitsch PetscCall(MatSetType(A, MATMPIDENSE)); 8169566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(A, NULL)); 8178965ea79SLois Curfman McInnes 81839ddd567SLois Curfman McInnes /* Copy the matrix ... This isn't the most efficient means, 81939ddd567SLois Curfman McInnes but it's quick for now */ 82051022da4SBarry Smith A->insertmode = INSERT_VALUES; 8212205254eSKarl Rupp 8222205254eSKarl Rupp row = mat->rmap->rstart; 8232205254eSKarl Rupp m = mdn->A->rmap->n; 8248965ea79SLois Curfman McInnes for (i = 0; i < m; i++) { 8259566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIDense(mat, row, &nz, &cols, &vals)); 8269566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIDense(A, 1, &row, nz, cols, vals, INSERT_VALUES)); 8279566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIDense(mat, row, &nz, &cols, &vals)); 82839ddd567SLois Curfman McInnes row++; 8298965ea79SLois Curfman McInnes } 8308965ea79SLois Curfman McInnes 8319566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 8329566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 8339566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 834dd400576SPatrick Sanan if (rank == 0) { 835f4f49eeaSPierre Jolivet PetscCall(PetscObjectSetName((PetscObject)((Mat_MPIDense *)A->data)->A, ((PetscObject)mat)->name)); 836f4f49eeaSPierre Jolivet PetscCall(MatView_SeqDense(((Mat_MPIDense *)A->data)->A, sviewer)); 8378965ea79SLois Curfman McInnes } 8389566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 8399566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 8408965ea79SLois Curfman McInnes } 8413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8428965ea79SLois Curfman McInnes } 8438965ea79SLois Curfman McInnes 84466976f2fSJacob Faibussowitsch static PetscErrorCode MatView_MPIDense(Mat mat, PetscViewer viewer) 845d71ae5a4SJacob Faibussowitsch { 846ace3abfcSBarry Smith PetscBool iascii, isbinary, isdraw, issocket; 8478965ea79SLois Curfman McInnes 848433994e6SBarry Smith PetscFunctionBegin; 8499566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 8509566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 8519566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 8529566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 8530f5bd95cSBarry Smith 85432077d6dSBarry Smith if (iascii || issocket || isdraw) { 8559566063dSJacob Faibussowitsch PetscCall(MatView_MPIDense_ASCIIorDraworSocket(mat, viewer)); 8561baa6e33SBarry Smith } else if (isbinary) PetscCall(MatView_Dense_Binary(mat, viewer)); 8573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8588965ea79SLois Curfman McInnes } 8598965ea79SLois Curfman McInnes 86066976f2fSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIDense(Mat A, MatInfoType flag, MatInfo *info) 861d71ae5a4SJacob Faibussowitsch { 8623501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense *)A->data; 8633501a2bdSLois Curfman McInnes Mat mdn = mat->A; 8643966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 8658965ea79SLois Curfman McInnes 8663a40ed3dSBarry Smith PetscFunctionBegin; 8674e220ebcSLois Curfman McInnes info->block_size = 1.0; 8682205254eSKarl Rupp 8699566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mdn, MAT_LOCAL, info)); 8702205254eSKarl Rupp 8719371c9d4SSatish Balay isend[0] = info->nz_used; 8729371c9d4SSatish Balay isend[1] = info->nz_allocated; 8739371c9d4SSatish Balay isend[2] = info->nz_unneeded; 8749371c9d4SSatish Balay isend[3] = info->memory; 8759371c9d4SSatish Balay isend[4] = info->mallocs; 8768965ea79SLois Curfman McInnes if (flag == MAT_LOCAL) { 8774e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 8784e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 8794e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 8804e220ebcSLois Curfman McInnes info->memory = isend[3]; 8814e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 8828965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 883462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)A))); 8842205254eSKarl Rupp 8854e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 8864e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 8874e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 8884e220ebcSLois Curfman McInnes info->memory = irecv[3]; 8894e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 8908965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 891462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)A))); 8922205254eSKarl Rupp 8934e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 8944e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 8954e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 8964e220ebcSLois Curfman McInnes info->memory = irecv[3]; 8974e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 8988965ea79SLois Curfman McInnes } 8994e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 9004e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 9014e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 9023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9038965ea79SLois Curfman McInnes } 9048965ea79SLois Curfman McInnes 90566976f2fSJacob Faibussowitsch static PetscErrorCode MatSetOption_MPIDense(Mat A, MatOption op, PetscBool flg) 906d71ae5a4SJacob Faibussowitsch { 90739ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense *)A->data; 9088965ea79SLois Curfman McInnes 9093a40ed3dSBarry Smith PetscFunctionBegin; 91012c028f9SKris Buschelman switch (op) { 911512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 91212c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 91312c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 91443674050SBarry Smith MatCheckPreallocated(A, 1); 9159566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 91612c028f9SKris Buschelman break; 91712c028f9SKris Buschelman case MAT_ROW_ORIENTED: 91843674050SBarry Smith MatCheckPreallocated(A, 1); 9194e0d8c25SBarry Smith a->roworiented = flg; 9209566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 92112c028f9SKris Buschelman break; 9228c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 92313fa8e87SLisandro Dalcin case MAT_KEEP_NONZERO_PATTERN: 92412c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 925d71ae5a4SJacob Faibussowitsch case MAT_SORTED_FULL: 926d71ae5a4SJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 927d71ae5a4SJacob Faibussowitsch break; 928d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES: 929d71ae5a4SJacob Faibussowitsch a->donotstash = flg; 930d71ae5a4SJacob Faibussowitsch break; 93177e54ba9SKris Buschelman case MAT_SYMMETRIC: 93277e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 9339a4540c5SBarry Smith case MAT_HERMITIAN: 9349a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 935b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 936b94d7dedSBarry Smith case MAT_SPD: 937600fe468SBarry Smith case MAT_IGNORE_LOWER_TRIANGULAR: 9385d7aebe8SStefano Zampini case MAT_IGNORE_ZERO_ENTRIES: 939b94d7dedSBarry Smith case MAT_SPD_ETERNAL: 940b94d7dedSBarry Smith /* if the diagonal matrix is square it inherits some of the properties above */ 9419566063dSJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 94277e54ba9SKris Buschelman break; 943d71ae5a4SJacob Faibussowitsch default: 944d71ae5a4SJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "unknown option %s", MatOptions[op]); 9453a40ed3dSBarry Smith } 9463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9478965ea79SLois Curfman McInnes } 9488965ea79SLois Curfman McInnes 94966976f2fSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIDense(Mat A, Vec ll, Vec rr) 950d71ae5a4SJacob Faibussowitsch { 9515b2fa520SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)A->data; 952637a0070SStefano Zampini const PetscScalar *l; 953637a0070SStefano Zampini PetscScalar x, *v, *vv, *r; 954637a0070SStefano Zampini PetscInt i, j, s2a, s3a, s2, s3, m = mdn->A->rmap->n, n = mdn->A->cmap->n, lda; 9555b2fa520SLois Curfman McInnes 9565b2fa520SLois Curfman McInnes PetscFunctionBegin; 9579566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(mdn->A, &vv)); 9589566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(mdn->A, &lda)); 9599566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, &s2, &s3)); 9605b2fa520SLois Curfman McInnes if (ll) { 9619566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll, &s2a)); 96208401ef6SPierre Jolivet PetscCheck(s2a == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Left scaling vector non-conforming local size, %" PetscInt_FMT " != %" PetscInt_FMT, s2a, s2); 9639566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(ll, &l)); 9645b2fa520SLois Curfman McInnes for (i = 0; i < m; i++) { 9655b2fa520SLois Curfman McInnes x = l[i]; 966637a0070SStefano Zampini v = vv + i; 9679371c9d4SSatish Balay for (j = 0; j < n; j++) { 9689371c9d4SSatish Balay (*v) *= x; 9699371c9d4SSatish Balay v += lda; 9709371c9d4SSatish Balay } 9715b2fa520SLois Curfman McInnes } 9729566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(ll, &l)); 9739566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(1.0 * n * m)); 9745b2fa520SLois Curfman McInnes } 9755b2fa520SLois Curfman McInnes if (rr) { 976637a0070SStefano Zampini const PetscScalar *ar; 977637a0070SStefano Zampini 9789566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &s3a)); 97908401ef6SPierre Jolivet PetscCheck(s3a == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Right scaling vec non-conforming local size, %" PetscInt_FMT " != %" PetscInt_FMT ".", s3a, s3); 9809566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(rr, &ar)); 9816f08ad05SPierre Jolivet if (!mdn->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); 9829566063dSJacob Faibussowitsch PetscCall(VecGetArray(mdn->lvec, &r)); 9839566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(mdn->Mvctx, MPIU_SCALAR, ar, r, MPI_REPLACE)); 9849566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(mdn->Mvctx, MPIU_SCALAR, ar, r, MPI_REPLACE)); 9859566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(rr, &ar)); 9865b2fa520SLois Curfman McInnes for (i = 0; i < n; i++) { 9875b2fa520SLois Curfman McInnes x = r[i]; 988637a0070SStefano Zampini v = vv + i * lda; 9892205254eSKarl Rupp for (j = 0; j < m; j++) (*v++) *= x; 9905b2fa520SLois Curfman McInnes } 9919566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mdn->lvec, &r)); 9929566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(1.0 * n * m)); 9935b2fa520SLois Curfman McInnes } 9949566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(mdn->A, &vv)); 9953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9965b2fa520SLois Curfman McInnes } 9975b2fa520SLois Curfman McInnes 99866976f2fSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIDense(Mat A, NormType type, PetscReal *nrm) 999d71ae5a4SJacob Faibussowitsch { 10003501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)A->data; 100113f74950SBarry Smith PetscInt i, j; 10026497c311SBarry Smith PetscMPIInt size, iN; 1003329f5518SBarry Smith PetscReal sum = 0.0; 1004637a0070SStefano Zampini const PetscScalar *av, *v; 10053501a2bdSLois Curfman McInnes 10063a40ed3dSBarry Smith PetscFunctionBegin; 10079566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(mdn->A, &av)); 1008637a0070SStefano Zampini v = av; 10099566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 1010616b8fbbSStefano Zampini if (size == 1) { 10119566063dSJacob Faibussowitsch PetscCall(MatNorm(mdn->A, type, nrm)); 10123501a2bdSLois Curfman McInnes } else { 10133501a2bdSLois Curfman McInnes if (type == NORM_FROBENIUS) { 1014d0f46423SBarry Smith for (i = 0; i < mdn->A->cmap->n * mdn->A->rmap->n; i++) { 10159371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 10169371c9d4SSatish Balay v++; 10173501a2bdSLois Curfman McInnes } 1018462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A))); 10198f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 10209566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * mdn->A->cmap->n * mdn->A->rmap->n)); 10213a40ed3dSBarry Smith } else if (type == NORM_1) { 1022329f5518SBarry Smith PetscReal *tmp, *tmp2; 10239566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(A->cmap->N, &tmp, A->cmap->N, &tmp2)); 1024064f8208SBarry Smith *nrm = 0.0; 1025637a0070SStefano Zampini v = av; 1026d0f46423SBarry Smith for (j = 0; j < mdn->A->cmap->n; j++) { 1027d0f46423SBarry Smith for (i = 0; i < mdn->A->rmap->n; i++) { 10289371c9d4SSatish Balay tmp[j] += PetscAbsScalar(*v); 10299371c9d4SSatish Balay v++; 10303501a2bdSLois Curfman McInnes } 10313501a2bdSLois Curfman McInnes } 10326497c311SBarry Smith PetscCall(PetscMPIIntCast(A->cmap->N, &iN)); 1033462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(tmp, tmp2, iN, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A))); 1034d0f46423SBarry Smith for (j = 0; j < A->cmap->N; j++) { 1035064f8208SBarry Smith if (tmp2[j] > *nrm) *nrm = tmp2[j]; 10363501a2bdSLois Curfman McInnes } 10379566063dSJacob Faibussowitsch PetscCall(PetscFree2(tmp, tmp2)); 10389566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(A->cmap->n * A->rmap->n)); 10393a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 1040329f5518SBarry Smith PetscReal ntemp; 10419566063dSJacob Faibussowitsch PetscCall(MatNorm(mdn->A, type, &ntemp)); 1042462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&ntemp, nrm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A))); 1043ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "No support for two norm"); 10443501a2bdSLois Curfman McInnes } 10459566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(mdn->A, &av)); 10463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 10473501a2bdSLois Curfman McInnes } 10483501a2bdSLois Curfman McInnes 104966976f2fSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIDense(Mat A, MatReuse reuse, Mat *matout) 1050d71ae5a4SJacob Faibussowitsch { 10513501a2bdSLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense *)A->data; 10523501a2bdSLois Curfman McInnes Mat B; 1053d0f46423SBarry Smith PetscInt M = A->rmap->N, N = A->cmap->N, m, n, *rwork, rstart = A->rmap->rstart; 1054637a0070SStefano Zampini PetscInt j, i, lda; 105587828ca2SBarry Smith PetscScalar *v; 10563501a2bdSLois Curfman McInnes 10573a40ed3dSBarry Smith PetscFunctionBegin; 10587fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout)); 1059cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 10609566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 10619566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M)); 10629566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)A)->type_name)); 10639566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(B, NULL)); 1064637a0070SStefano Zampini } else B = *matout; 10653501a2bdSLois Curfman McInnes 10669371c9d4SSatish Balay m = a->A->rmap->n; 10679371c9d4SSatish Balay n = a->A->cmap->n; 10689566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A, (const PetscScalar **)&v)); 10699566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &lda)); 10709566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &rwork)); 10713501a2bdSLois Curfman McInnes for (i = 0; i < m; i++) rwork[i] = rstart + i; 10721acff37aSSatish Balay for (j = 0; j < n; j++) { 10739566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, 1, &j, m, rwork, v, INSERT_VALUES)); 10748e3a54c0SPierre Jolivet v = PetscSafePointerPlusOffset(v, lda); 10753501a2bdSLois Curfman McInnes } 10769566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A, (const PetscScalar **)&v)); 10779566063dSJacob Faibussowitsch PetscCall(PetscFree(rwork)); 10789566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 10799566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 1080cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) { 10813501a2bdSLois Curfman McInnes *matout = B; 10823501a2bdSLois Curfman McInnes } else { 10839566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(A, &B)); 10843501a2bdSLois Curfman McInnes } 10853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1086096963f5SLois Curfman McInnes } 1087096963f5SLois Curfman McInnes 10886849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat, MatDuplicateOption, Mat *); 108952c5f739Sprj- PETSC_INTERN PetscErrorCode MatScale_MPIDense(Mat, PetscScalar); 10908965ea79SLois Curfman McInnes 109166976f2fSJacob Faibussowitsch static PetscErrorCode MatSetUp_MPIDense(Mat A) 1092d71ae5a4SJacob Faibussowitsch { 1093273d9f13SBarry Smith PetscFunctionBegin; 10949566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->rmap)); 10959566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->cmap)); 109648a46eb9SPierre Jolivet if (!A->preallocated) PetscCall(MatMPIDenseSetPreallocation(A, NULL)); 10973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1098273d9f13SBarry Smith } 1099273d9f13SBarry Smith 110066976f2fSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIDense(Mat Y, PetscScalar alpha, Mat X, MatStructure str) 1101d71ae5a4SJacob Faibussowitsch { 1102488007eeSBarry Smith Mat_MPIDense *A = (Mat_MPIDense *)Y->data, *B = (Mat_MPIDense *)X->data; 1103488007eeSBarry Smith 1104488007eeSBarry Smith PetscFunctionBegin; 11059566063dSJacob Faibussowitsch PetscCall(MatAXPY(A->A, alpha, B->A, str)); 11063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1107488007eeSBarry Smith } 1108488007eeSBarry Smith 110966976f2fSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIDense(Mat mat) 1110d71ae5a4SJacob Faibussowitsch { 1111ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense *)mat->data; 1112ba337c44SJed Brown 1113ba337c44SJed Brown PetscFunctionBegin; 11149566063dSJacob Faibussowitsch PetscCall(MatConjugate(a->A)); 11153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1116ba337c44SJed Brown } 1117ba337c44SJed Brown 111866976f2fSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIDense(Mat A) 1119d71ae5a4SJacob Faibussowitsch { 1120ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense *)A->data; 1121ba337c44SJed Brown 1122ba337c44SJed Brown PetscFunctionBegin; 11239566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 11243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1125ba337c44SJed Brown } 1126ba337c44SJed Brown 112766976f2fSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIDense(Mat A) 1128d71ae5a4SJacob Faibussowitsch { 1129ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense *)A->data; 1130ba337c44SJed Brown 1131ba337c44SJed Brown PetscFunctionBegin; 11329566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 11333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1134ba337c44SJed Brown } 1135ba337c44SJed Brown 1136d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatGetColumnVector_MPIDense(Mat A, Vec v, PetscInt col) 1137d71ae5a4SJacob Faibussowitsch { 1138637a0070SStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 113949a6ff4bSBarry Smith 114049a6ff4bSBarry Smith PetscFunctionBegin; 114128b400f6SJacob Faibussowitsch PetscCheck(a->A, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Missing local matrix"); 114228b400f6SJacob Faibussowitsch PetscCheck(a->A->ops->getcolumnvector, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Missing get column operation"); 11439566063dSJacob Faibussowitsch PetscCall((*a->A->ops->getcolumnvector)(a->A, v, col)); 11443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 114549a6ff4bSBarry Smith } 114649a6ff4bSBarry Smith 1147857cbf51SRichard Tran Mills PETSC_INTERN PetscErrorCode MatGetColumnReductions_SeqDense(Mat, PetscInt, PetscReal *); 114852c5f739Sprj- 114966976f2fSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIDense(Mat A, PetscInt type, PetscReal *reductions) 1150d71ae5a4SJacob Faibussowitsch { 1151a873a8cdSSam Reynolds PetscInt i, m, n; 11520716a85fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense *)A->data; 11530716a85fSBarry Smith PetscReal *work; 11546497c311SBarry Smith PetscMPIInt in; 11550716a85fSBarry Smith 11560716a85fSBarry Smith PetscFunctionBegin; 11579566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &n)); 11589566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &work)); 1159857cbf51SRichard Tran Mills if (type == REDUCTION_MEAN_REALPART) { 11609566063dSJacob Faibussowitsch PetscCall(MatGetColumnReductions_SeqDense(a->A, (PetscInt)REDUCTION_SUM_REALPART, work)); 1161857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_IMAGINARYPART) { 11629566063dSJacob Faibussowitsch PetscCall(MatGetColumnReductions_SeqDense(a->A, (PetscInt)REDUCTION_SUM_IMAGINARYPART, work)); 1163a873a8cdSSam Reynolds } else { 11649566063dSJacob Faibussowitsch PetscCall(MatGetColumnReductions_SeqDense(a->A, type, work)); 1165a873a8cdSSam Reynolds } 1166857cbf51SRichard Tran Mills if (type == NORM_2) { 11670716a85fSBarry Smith for (i = 0; i < n; i++) work[i] *= work[i]; 11680716a85fSBarry Smith } 11696497c311SBarry Smith PetscCall(PetscMPIIntCast(n, &in)); 1170857cbf51SRichard Tran Mills if (type == NORM_INFINITY) { 1171462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(work, reductions, in, MPIU_REAL, MPIU_MAX, A->hdr.comm)); 11720716a85fSBarry Smith } else { 1173462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(work, reductions, in, MPIU_REAL, MPIU_SUM, A->hdr.comm)); 11740716a85fSBarry Smith } 11759566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 1176857cbf51SRichard Tran Mills if (type == NORM_2) { 1177a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] = PetscSqrtReal(reductions[i]); 1178857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 1179a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] /= m; 11800716a85fSBarry Smith } 11813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 11820716a85fSBarry Smith } 11830716a85fSBarry Smith 1184d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetRandom_MPIDense(Mat x, PetscRandom rctx) 1185d71ae5a4SJacob Faibussowitsch { 118673a71a0fSBarry Smith Mat_MPIDense *d = (Mat_MPIDense *)x->data; 118773a71a0fSBarry Smith 118873a71a0fSBarry Smith PetscFunctionBegin; 11899566063dSJacob Faibussowitsch PetscCall(MatSetRandom(d->A, rctx)); 11903faff063SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 11913faff063SStefano Zampini x->offloadmask = d->A->offloadmask; 11923faff063SStefano Zampini #endif 11933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 119473a71a0fSBarry Smith } 119573a71a0fSBarry Smith 1196d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIDense(Mat A, PetscBool *missing, PetscInt *d) 1197d71ae5a4SJacob Faibussowitsch { 11983b49f96aSBarry Smith PetscFunctionBegin; 11993b49f96aSBarry Smith *missing = PETSC_FALSE; 12003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 12013b49f96aSBarry Smith } 12023b49f96aSBarry Smith 12034222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat, Mat, PetscReal, Mat); 1204cc48ffa7SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat, Mat, Mat); 12056718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat, Mat, PetscReal, Mat); 1206a1f9a5e6SStefano Zampini static PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat, Mat, Mat); 12076718818eSStefano Zampini static PetscErrorCode MatEqual_MPIDense(Mat, Mat, PetscBool *); 12086718818eSStefano Zampini static PetscErrorCode MatLoad_MPIDense(Mat, PetscViewer); 12095d8c7819SPierre Jolivet static PetscErrorCode MatProductSetFromOptions_MPIDense(Mat); 1210cc48ffa7SToby Isaac 121109dc0095SBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIDense, 121209dc0095SBarry Smith MatGetRow_MPIDense, 121309dc0095SBarry Smith MatRestoreRow_MPIDense, 121409dc0095SBarry Smith MatMult_MPIDense, 121597304618SKris Buschelman /* 4*/ MatMultAdd_MPIDense, 12167c922b88SBarry Smith MatMultTranspose_MPIDense, 12177c922b88SBarry Smith MatMultTransposeAdd_MPIDense, 1218f4259b30SLisandro Dalcin NULL, 1219f4259b30SLisandro Dalcin NULL, 1220f4259b30SLisandro Dalcin NULL, 1221f4259b30SLisandro Dalcin /* 10*/ NULL, 1222f4259b30SLisandro Dalcin NULL, 1223f4259b30SLisandro Dalcin NULL, 1224f4259b30SLisandro Dalcin NULL, 122509dc0095SBarry Smith MatTranspose_MPIDense, 122697304618SKris Buschelman /* 15*/ MatGetInfo_MPIDense, 12276e4ee0c6SHong Zhang MatEqual_MPIDense, 122809dc0095SBarry Smith MatGetDiagonal_MPIDense, 12295b2fa520SLois Curfman McInnes MatDiagonalScale_MPIDense, 123009dc0095SBarry Smith MatNorm_MPIDense, 123197304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPIDense, 123209dc0095SBarry Smith MatAssemblyEnd_MPIDense, 123309dc0095SBarry Smith MatSetOption_MPIDense, 123409dc0095SBarry Smith MatZeroEntries_MPIDense, 1235d519adbfSMatthew Knepley /* 24*/ MatZeroRows_MPIDense, 1236f4259b30SLisandro Dalcin NULL, 1237f4259b30SLisandro Dalcin NULL, 1238f4259b30SLisandro Dalcin NULL, 1239f4259b30SLisandro Dalcin NULL, 12404994cf47SJed Brown /* 29*/ MatSetUp_MPIDense, 1241f4259b30SLisandro Dalcin NULL, 1242f4259b30SLisandro Dalcin NULL, 1243c56a70eeSBarry Smith MatGetDiagonalBlock_MPIDense, 1244f4259b30SLisandro Dalcin NULL, 1245d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPIDense, 1246f4259b30SLisandro Dalcin NULL, 1247f4259b30SLisandro Dalcin NULL, 1248f4259b30SLisandro Dalcin NULL, 1249f4259b30SLisandro Dalcin NULL, 1250d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPIDense, 12517dae84e0SHong Zhang MatCreateSubMatrices_MPIDense, 1252f4259b30SLisandro Dalcin NULL, 125309dc0095SBarry Smith MatGetValues_MPIDense, 1254a76f77c3SStefano Zampini MatCopy_MPIDense, 1255f4259b30SLisandro Dalcin /* 44*/ NULL, 125609dc0095SBarry Smith MatScale_MPIDense, 12572f605a99SJose E. Roman MatShift_MPIDense, 1258f4259b30SLisandro Dalcin NULL, 1259f4259b30SLisandro Dalcin NULL, 126073a71a0fSBarry Smith /* 49*/ MatSetRandom_MPIDense, 1261f4259b30SLisandro Dalcin NULL, 1262f4259b30SLisandro Dalcin NULL, 1263f4259b30SLisandro Dalcin NULL, 1264f4259b30SLisandro Dalcin NULL, 1265f4259b30SLisandro Dalcin /* 54*/ NULL, 1266f4259b30SLisandro Dalcin NULL, 1267f4259b30SLisandro Dalcin NULL, 1268f4259b30SLisandro Dalcin NULL, 1269f4259b30SLisandro Dalcin NULL, 12707dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPIDense, 1271b9b97703SBarry Smith MatDestroy_MPIDense, 1272b9b97703SBarry Smith MatView_MPIDense, 1273f4259b30SLisandro Dalcin NULL, 1274f4259b30SLisandro Dalcin NULL, 1275f4259b30SLisandro Dalcin /* 64*/ NULL, 1276f4259b30SLisandro Dalcin NULL, 1277f4259b30SLisandro Dalcin NULL, 1278f4259b30SLisandro Dalcin NULL, 1279f4259b30SLisandro Dalcin NULL, 1280f4259b30SLisandro Dalcin /* 69*/ NULL, 1281f4259b30SLisandro Dalcin NULL, 1282f4259b30SLisandro Dalcin NULL, 1283f4259b30SLisandro Dalcin NULL, 1284f4259b30SLisandro Dalcin NULL, 1285f4259b30SLisandro Dalcin /* 74*/ NULL, 1286f4259b30SLisandro Dalcin NULL, 1287f4259b30SLisandro Dalcin NULL, 1288f4259b30SLisandro Dalcin NULL, 1289f4259b30SLisandro Dalcin NULL, 1290f4259b30SLisandro Dalcin /* 79*/ NULL, 1291f4259b30SLisandro Dalcin NULL, 1292f4259b30SLisandro Dalcin NULL, 1293f4259b30SLisandro Dalcin NULL, 12945bba2384SShri Abhyankar /* 83*/ MatLoad_MPIDense, 1295f4259b30SLisandro Dalcin NULL, 1296f4259b30SLisandro Dalcin NULL, 1297f4259b30SLisandro Dalcin NULL, 1298f4259b30SLisandro Dalcin NULL, 1299f4259b30SLisandro Dalcin NULL, 1300f4259b30SLisandro Dalcin /* 89*/ NULL, 1301f4259b30SLisandro Dalcin NULL, 1302f4259b30SLisandro Dalcin NULL, 1303f4259b30SLisandro Dalcin NULL, 1304f4259b30SLisandro Dalcin NULL, 1305f4259b30SLisandro Dalcin /* 94*/ NULL, 1306f4259b30SLisandro Dalcin NULL, 13076718818eSStefano Zampini MatMatTransposeMultSymbolic_MPIDense_MPIDense, 1308cc48ffa7SToby Isaac MatMatTransposeMultNumeric_MPIDense_MPIDense, 1309f4259b30SLisandro Dalcin NULL, 13104222ddf1SHong Zhang /* 99*/ MatProductSetFromOptions_MPIDense, 1311f4259b30SLisandro Dalcin NULL, 1312f4259b30SLisandro Dalcin NULL, 1313ba337c44SJed Brown MatConjugate_MPIDense, 1314f4259b30SLisandro Dalcin NULL, 1315f4259b30SLisandro Dalcin /*104*/ NULL, 1316ba337c44SJed Brown MatRealPart_MPIDense, 1317ba337c44SJed Brown MatImaginaryPart_MPIDense, 1318f4259b30SLisandro Dalcin NULL, 1319f4259b30SLisandro Dalcin NULL, 1320f4259b30SLisandro Dalcin /*109*/ NULL, 1321f4259b30SLisandro Dalcin NULL, 1322f4259b30SLisandro Dalcin NULL, 132349a6ff4bSBarry Smith MatGetColumnVector_MPIDense, 13243b49f96aSBarry Smith MatMissingDiagonal_MPIDense, 1325f4259b30SLisandro Dalcin /*114*/ NULL, 1326f4259b30SLisandro Dalcin NULL, 1327f4259b30SLisandro Dalcin NULL, 1328f4259b30SLisandro Dalcin NULL, 1329f4259b30SLisandro Dalcin NULL, 1330f4259b30SLisandro Dalcin /*119*/ NULL, 1331f4259b30SLisandro Dalcin NULL, 1332459e8d23SBlanca Mellado Pinto MatMultHermitianTranspose_MPIDense, 1333459e8d23SBlanca Mellado Pinto MatMultHermitianTransposeAdd_MPIDense, 1334f4259b30SLisandro Dalcin NULL, 1335f4259b30SLisandro Dalcin /*124*/ NULL, 1336a873a8cdSSam Reynolds MatGetColumnReductions_MPIDense, 1337f4259b30SLisandro Dalcin NULL, 1338f4259b30SLisandro Dalcin NULL, 1339f4259b30SLisandro Dalcin NULL, 1340f4259b30SLisandro Dalcin /*129*/ NULL, 1341f4259b30SLisandro Dalcin NULL, 13426718818eSStefano Zampini MatTransposeMatMultSymbolic_MPIDense_MPIDense, 1343cb20be35SHong Zhang MatTransposeMatMultNumeric_MPIDense_MPIDense, 1344f4259b30SLisandro Dalcin NULL, 1345f4259b30SLisandro Dalcin /*134*/ NULL, 1346f4259b30SLisandro Dalcin NULL, 1347f4259b30SLisandro Dalcin NULL, 1348f4259b30SLisandro Dalcin NULL, 1349f4259b30SLisandro Dalcin NULL, 1350f4259b30SLisandro Dalcin /*139*/ NULL, 1351f4259b30SLisandro Dalcin NULL, 1352f4259b30SLisandro Dalcin NULL, 1353f4259b30SLisandro Dalcin NULL, 1354f4259b30SLisandro Dalcin NULL, 13554222ddf1SHong Zhang MatCreateMPIMatConcatenateSeqMat_MPIDense, 1356f4259b30SLisandro Dalcin /*145*/ NULL, 1357f4259b30SLisandro Dalcin NULL, 135899a7f59eSMark Adams NULL, 135999a7f59eSMark Adams NULL, 13607fb60732SBarry Smith NULL, 1361dec0b466SHong Zhang /*150*/ NULL, 1362eede4a3fSMark Adams NULL, 13634cc2b5b5SPierre Jolivet NULL, 136442ce410bSJunchao Zhang NULL, 136542ce410bSJunchao Zhang NULL, 1366dec0b466SHong Zhang NULL}; 13678965ea79SLois Curfman McInnes 136866976f2fSJacob Faibussowitsch static PetscErrorCode MatMPIDenseSetPreallocation_MPIDense(Mat mat, PetscScalar *data) 1369d71ae5a4SJacob Faibussowitsch { 1370637a0070SStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)mat->data; 137147d993e7Ssuyashtn MatType mtype = MATSEQDENSE; 1372a23d5eceSKris Buschelman 1373a23d5eceSKris Buschelman PetscFunctionBegin; 137428b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)mat), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 13759566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 13769566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 1377637a0070SStefano Zampini if (!a->A) { 13789566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &a->A)); 13799566063dSJacob Faibussowitsch PetscCall(MatSetSizes(a->A, mat->rmap->n, mat->cmap->N, mat->rmap->n, mat->cmap->N)); 1380637a0070SStefano Zampini } 138147d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) 138247d993e7Ssuyashtn PetscBool iscuda; 13839566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)mat, MATMPIDENSECUDA, &iscuda)); 138447d993e7Ssuyashtn if (iscuda) mtype = MATSEQDENSECUDA; 138547d993e7Ssuyashtn #endif 138647d993e7Ssuyashtn #if defined(PETSC_HAVE_HIP) 138747d993e7Ssuyashtn PetscBool iship; 138847d993e7Ssuyashtn PetscCall(PetscObjectTypeCompare((PetscObject)mat, MATMPIDENSEHIP, &iship)); 138947d993e7Ssuyashtn if (iship) mtype = MATSEQDENSEHIP; 139047d993e7Ssuyashtn #endif 139147d993e7Ssuyashtn PetscCall(MatSetType(a->A, mtype)); 13929566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(a->A, data)); 139347d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) 13943faff063SStefano Zampini mat->offloadmask = a->A->offloadmask; 13953faff063SStefano Zampini #endif 1396637a0070SStefano Zampini mat->preallocated = PETSC_TRUE; 13976f08ad05SPierre Jolivet mat->assembled = PETSC_TRUE; 13983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1399a23d5eceSKris Buschelman } 1400a23d5eceSKris Buschelman 1401d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIDense(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 1402d71ae5a4SJacob Faibussowitsch { 14034e29119aSPierre Jolivet Mat B, C; 14044e29119aSPierre Jolivet 14054e29119aSPierre Jolivet PetscFunctionBegin; 14069566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &C)); 14079566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqAIJ_SeqDense(C, MATSEQDENSE, MAT_INITIAL_MATRIX, &B)); 14089566063dSJacob Faibussowitsch PetscCall(MatDestroy(&C)); 14094e29119aSPierre Jolivet if (reuse == MAT_REUSE_MATRIX) { 14104e29119aSPierre Jolivet C = *newmat; 14114e29119aSPierre Jolivet } else C = NULL; 14129566063dSJacob Faibussowitsch PetscCall(MatCreateMPIMatConcatenateSeqMat(PetscObjectComm((PetscObject)A), B, A->cmap->n, !C ? MAT_INITIAL_MATRIX : MAT_REUSE_MATRIX, &C)); 14139566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 14144e29119aSPierre Jolivet if (reuse == MAT_INPLACE_MATRIX) { 14159566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &C)); 14164e29119aSPierre Jolivet } else if (reuse == MAT_INITIAL_MATRIX) *newmat = C; 14173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14184e29119aSPierre Jolivet } 14194e29119aSPierre Jolivet 142066976f2fSJacob Faibussowitsch static PetscErrorCode MatConvert_MPIDense_MPIAIJ(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 1421d71ae5a4SJacob Faibussowitsch { 14224e29119aSPierre Jolivet Mat B, C; 14234e29119aSPierre Jolivet 14244e29119aSPierre Jolivet PetscFunctionBegin; 14259566063dSJacob Faibussowitsch PetscCall(MatDenseGetLocalMatrix(A, &C)); 14269566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqDense_SeqAIJ(C, MATSEQAIJ, MAT_INITIAL_MATRIX, &B)); 14274e29119aSPierre Jolivet if (reuse == MAT_REUSE_MATRIX) { 14284e29119aSPierre Jolivet C = *newmat; 14294e29119aSPierre Jolivet } else C = NULL; 14309566063dSJacob Faibussowitsch PetscCall(MatCreateMPIMatConcatenateSeqMat(PetscObjectComm((PetscObject)A), B, A->cmap->n, !C ? MAT_INITIAL_MATRIX : MAT_REUSE_MATRIX, &C)); 14319566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 14324e29119aSPierre Jolivet if (reuse == MAT_INPLACE_MATRIX) { 14339566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &C)); 14344e29119aSPierre Jolivet } else if (reuse == MAT_INITIAL_MATRIX) *newmat = C; 14353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14364e29119aSPierre Jolivet } 14374e29119aSPierre Jolivet 143865b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 1439d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIDense_Elemental(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 1440d71ae5a4SJacob Faibussowitsch { 1441f709e8d7SPierre Jolivet Mat_MPIDense *a = (Mat_MPIDense *)A->data; 14428ea901baSHong Zhang Mat mat_elemental; 144332d7a744SHong Zhang PetscScalar *v; 1444f709e8d7SPierre Jolivet PetscInt m = A->rmap->n, N = A->cmap->N, rstart = A->rmap->rstart, i, *rows, *cols, lda; 14458ea901baSHong Zhang 14468baccfbdSHong Zhang PetscFunctionBegin; 1447378336b6SHong Zhang if (reuse == MAT_REUSE_MATRIX) { 1448378336b6SHong Zhang mat_elemental = *newmat; 14499566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(*newmat)); 1450378336b6SHong Zhang } else { 14519566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental)); 14529566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat_elemental, PETSC_DECIDE, PETSC_DECIDE, A->rmap->N, A->cmap->N)); 14539566063dSJacob Faibussowitsch PetscCall(MatSetType(mat_elemental, MATELEMENTAL)); 14549566063dSJacob Faibussowitsch PetscCall(MatSetUp(mat_elemental)); 14559566063dSJacob Faibussowitsch PetscCall(MatSetOption(mat_elemental, MAT_ROW_ORIENTED, PETSC_FALSE)); 1456378336b6SHong Zhang } 1457378336b6SHong Zhang 14589566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &rows, N, &cols)); 145932d7a744SHong Zhang for (i = 0; i < N; i++) cols[i] = i; 146032d7a744SHong Zhang for (i = 0; i < m; i++) rows[i] = rstart + i; 14618ea901baSHong Zhang 1462637a0070SStefano Zampini /* PETSc-Elemental interface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */ 14639566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(A, &v)); 1464f709e8d7SPierre Jolivet PetscCall(MatDenseGetLDA(a->A, &lda)); 1465f709e8d7SPierre Jolivet if (lda == m) PetscCall(MatSetValues(mat_elemental, m, rows, N, cols, v, ADD_VALUES)); 1466f709e8d7SPierre Jolivet else { 1467f709e8d7SPierre Jolivet for (i = 0; i < N; i++) PetscCall(MatSetValues(mat_elemental, m, rows, 1, &i, v + lda * i, ADD_VALUES)); 1468f709e8d7SPierre Jolivet } 14699566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY)); 14709566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY)); 14719566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(A, &v)); 14729566063dSJacob Faibussowitsch PetscCall(PetscFree2(rows, cols)); 14738ea901baSHong Zhang 1474511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 14759566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &mat_elemental)); 14768ea901baSHong Zhang } else { 14778ea901baSHong Zhang *newmat = mat_elemental; 14788ea901baSHong Zhang } 14793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14808baccfbdSHong Zhang } 148165b80a83SHong Zhang #endif 14828baccfbdSHong Zhang 1483d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseGetColumn_MPIDense(Mat A, PetscInt col, PetscScalar **vals) 1484d71ae5a4SJacob Faibussowitsch { 148586aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense *)A->data; 148686aefd0dSHong Zhang 148786aefd0dSHong Zhang PetscFunctionBegin; 14889566063dSJacob Faibussowitsch PetscCall(MatDenseGetColumn(mat->A, col, vals)); 14893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 149086aefd0dSHong Zhang } 149186aefd0dSHong Zhang 1492d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseRestoreColumn_MPIDense(Mat A, PetscScalar **vals) 1493d71ae5a4SJacob Faibussowitsch { 149486aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense *)A->data; 149586aefd0dSHong Zhang 149686aefd0dSHong Zhang PetscFunctionBegin; 14979566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreColumn(mat->A, vals)); 14983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 149986aefd0dSHong Zhang } 150086aefd0dSHong Zhang 1501d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIDense(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) 1502d71ae5a4SJacob Faibussowitsch { 150394e2cb23SJakub Kruzik Mat_MPIDense *mat; 150494e2cb23SJakub Kruzik PetscInt m, nloc, N; 150594e2cb23SJakub Kruzik 150694e2cb23SJakub Kruzik PetscFunctionBegin; 15079566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat, &m, &N)); 15089566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(inmat, NULL, &nloc)); 150994e2cb23SJakub Kruzik if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 151094e2cb23SJakub Kruzik PetscInt sum; 151194e2cb23SJakub Kruzik 151248a46eb9SPierre Jolivet if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnership(comm, &n, &N)); 151394e2cb23SJakub Kruzik /* Check sum(n) = N */ 1514462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&n, &sum, 1, MPIU_INT, MPI_SUM, comm)); 151508401ef6SPierre Jolivet PetscCheck(sum == N, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local columns %" PetscInt_FMT " != global columns %" PetscInt_FMT, sum, N); 151694e2cb23SJakub Kruzik 15179566063dSJacob Faibussowitsch PetscCall(MatCreateDense(comm, m, n, PETSC_DETERMINE, N, NULL, outmat)); 15189566063dSJacob Faibussowitsch PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 151994e2cb23SJakub Kruzik } 152094e2cb23SJakub Kruzik 152194e2cb23SJakub Kruzik /* numeric phase */ 152294e2cb23SJakub Kruzik mat = (Mat_MPIDense *)(*outmat)->data; 15239566063dSJacob Faibussowitsch PetscCall(MatCopy(inmat, mat->A, SAME_NONZERO_PATTERN)); 15243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 152594e2cb23SJakub Kruzik } 152694e2cb23SJakub Kruzik 1527d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetColumnVec_MPIDense(Mat A, PetscInt col, Vec *v) 1528d71ae5a4SJacob Faibussowitsch { 15296947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 15306947451fSStefano Zampini PetscInt lda; 15316947451fSStefano Zampini 15326947451fSStefano Zampini PetscFunctionBegin; 153328b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 153428b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 1535d16ceb75SStefano Zampini if (!a->cvec) PetscCall(MatDenseCreateColumnVec_Private(A, &a->cvec)); 15366947451fSStefano Zampini a->vecinuse = col + 1; 15379566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &lda)); 15389566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(a->A, (PetscScalar **)&a->ptrinuse)); 15398e3a54c0SPierre Jolivet PetscCall(VecPlaceArray(a->cvec, PetscSafePointerPlusOffset(a->ptrinuse, (size_t)col * (size_t)lda))); 15406947451fSStefano Zampini *v = a->cvec; 15413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15426947451fSStefano Zampini } 15436947451fSStefano Zampini 1544d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreColumnVec_MPIDense(Mat A, PetscInt col, Vec *v) 1545d71ae5a4SJacob Faibussowitsch { 15466947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 15476947451fSStefano Zampini 15486947451fSStefano Zampini PetscFunctionBegin; 154928b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseGetColumnVec() first"); 155028b400f6SJacob Faibussowitsch PetscCheck(a->cvec, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Missing internal column vector"); 15514186a4bbSPierre Jolivet VecCheckAssembled(a->cvec); 15526947451fSStefano Zampini a->vecinuse = 0; 15539566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(a->A, (PetscScalar **)&a->ptrinuse)); 15549566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 1555742765d3SMatthew Knepley if (v) *v = NULL; 15563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15576947451fSStefano Zampini } 15586947451fSStefano Zampini 1559d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetColumnVecRead_MPIDense(Mat A, PetscInt col, Vec *v) 1560d71ae5a4SJacob Faibussowitsch { 15616947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 15626947451fSStefano Zampini PetscInt lda; 15636947451fSStefano Zampini 15646947451fSStefano Zampini PetscFunctionBegin; 156528b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 156628b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 1567d16ceb75SStefano Zampini if (!a->cvec) PetscCall(MatDenseCreateColumnVec_Private(A, &a->cvec)); 15686947451fSStefano Zampini a->vecinuse = col + 1; 15699566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &lda)); 15709566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A, &a->ptrinuse)); 15718e3a54c0SPierre Jolivet PetscCall(VecPlaceArray(a->cvec, PetscSafePointerPlusOffset(a->ptrinuse, (size_t)col * (size_t)lda))); 15729566063dSJacob Faibussowitsch PetscCall(VecLockReadPush(a->cvec)); 15736947451fSStefano Zampini *v = a->cvec; 15743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15756947451fSStefano Zampini } 15766947451fSStefano Zampini 1577d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreColumnVecRead_MPIDense(Mat A, PetscInt col, Vec *v) 1578d71ae5a4SJacob Faibussowitsch { 15796947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 15806947451fSStefano Zampini 15816947451fSStefano Zampini PetscFunctionBegin; 15825f80ce2aSJacob Faibussowitsch PetscCheck(a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseGetColumnVec() first"); 15835f80ce2aSJacob Faibussowitsch PetscCheck(a->cvec, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing internal column vector"); 15844186a4bbSPierre Jolivet VecCheckAssembled(a->cvec); 15856947451fSStefano Zampini a->vecinuse = 0; 15869566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A, &a->ptrinuse)); 15879566063dSJacob Faibussowitsch PetscCall(VecLockReadPop(a->cvec)); 15889566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 1589742765d3SMatthew Knepley if (v) *v = NULL; 15903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15916947451fSStefano Zampini } 15926947451fSStefano Zampini 1593d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetColumnVecWrite_MPIDense(Mat A, PetscInt col, Vec *v) 1594d71ae5a4SJacob Faibussowitsch { 15956947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 15966947451fSStefano Zampini PetscInt lda; 15976947451fSStefano Zampini 15986947451fSStefano Zampini PetscFunctionBegin; 15995f80ce2aSJacob Faibussowitsch PetscCheck(!a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 16005f80ce2aSJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 1601d16ceb75SStefano Zampini if (!a->cvec) PetscCall(MatDenseCreateColumnVec_Private(A, &a->cvec)); 16026947451fSStefano Zampini a->vecinuse = col + 1; 16039566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &lda)); 16049566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(a->A, (PetscScalar **)&a->ptrinuse)); 16058e3a54c0SPierre Jolivet PetscCall(VecPlaceArray(a->cvec, PetscSafePointerPlusOffset(a->ptrinuse, (size_t)col * (size_t)lda))); 16066947451fSStefano Zampini *v = a->cvec; 16073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16086947451fSStefano Zampini } 16096947451fSStefano Zampini 1610d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDense(Mat A, PetscInt col, Vec *v) 1611d71ae5a4SJacob Faibussowitsch { 16126947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 16136947451fSStefano Zampini 16146947451fSStefano Zampini PetscFunctionBegin; 16155f80ce2aSJacob Faibussowitsch PetscCheck(a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseGetColumnVec() first"); 16165f80ce2aSJacob Faibussowitsch PetscCheck(a->cvec, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing internal column vector"); 16174186a4bbSPierre Jolivet VecCheckAssembled(a->cvec); 16186947451fSStefano Zampini a->vecinuse = 0; 16199566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(a->A, (PetscScalar **)&a->ptrinuse)); 16209566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 1621742765d3SMatthew Knepley if (v) *v = NULL; 16223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16236947451fSStefano Zampini } 16246947451fSStefano Zampini 162566976f2fSJacob Faibussowitsch static PetscErrorCode MatDenseGetSubMatrix_MPIDense(Mat A, PetscInt rbegin, PetscInt rend, PetscInt cbegin, PetscInt cend, Mat *v) 1626d71ae5a4SJacob Faibussowitsch { 16275ea7661aSPierre Jolivet Mat_MPIDense *a = (Mat_MPIDense *)A->data; 1628616b8fbbSStefano Zampini Mat_MPIDense *c; 1629616b8fbbSStefano Zampini MPI_Comm comm; 1630a2748737SPierre Jolivet PetscInt pbegin, pend; 16315ea7661aSPierre Jolivet 16325ea7661aSPierre Jolivet PetscFunctionBegin; 16339566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 16345f80ce2aSJacob Faibussowitsch PetscCheck(!a->vecinuse, comm, PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 16355f80ce2aSJacob Faibussowitsch PetscCheck(!a->matinuse, comm, PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 1636a2748737SPierre Jolivet pbegin = PetscMax(0, PetscMin(A->rmap->rend, rbegin) - A->rmap->rstart); 1637a2748737SPierre Jolivet pend = PetscMin(A->rmap->n, PetscMax(0, rend - A->rmap->rstart)); 16385ea7661aSPierre Jolivet if (!a->cmat) { 16399566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &a->cmat)); 16409566063dSJacob Faibussowitsch PetscCall(MatSetType(a->cmat, ((PetscObject)A)->type_name)); 1641a2748737SPierre Jolivet if (rend - rbegin == A->rmap->N) PetscCall(PetscLayoutReference(A->rmap, &a->cmat->rmap)); 1642a2748737SPierre Jolivet else { 1643a2748737SPierre Jolivet PetscCall(PetscLayoutSetLocalSize(a->cmat->rmap, pend - pbegin)); 1644a2748737SPierre Jolivet PetscCall(PetscLayoutSetSize(a->cmat->rmap, rend - rbegin)); 1645a2748737SPierre Jolivet PetscCall(PetscLayoutSetUp(a->cmat->rmap)); 1646a2748737SPierre Jolivet } 16479566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(a->cmat->cmap, cend - cbegin)); 16489566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(a->cmat->cmap)); 1649a2748737SPierre Jolivet } else { 1650a2748737SPierre Jolivet PetscBool same = (PetscBool)(rend - rbegin == a->cmat->rmap->N); 1651a2748737SPierre Jolivet if (same && a->cmat->rmap->N != A->rmap->N) { 1652a2748737SPierre Jolivet same = (PetscBool)(pend - pbegin == a->cmat->rmap->n); 1653462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &same, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 1654a2748737SPierre Jolivet } 1655a2748737SPierre Jolivet if (!same) { 1656a2748737SPierre Jolivet PetscCall(PetscLayoutDestroy(&a->cmat->rmap)); 1657a2748737SPierre Jolivet PetscCall(PetscLayoutCreate(comm, &a->cmat->rmap)); 1658a2748737SPierre Jolivet PetscCall(PetscLayoutSetLocalSize(a->cmat->rmap, pend - pbegin)); 1659a2748737SPierre Jolivet PetscCall(PetscLayoutSetSize(a->cmat->rmap, rend - rbegin)); 1660a2748737SPierre Jolivet PetscCall(PetscLayoutSetUp(a->cmat->rmap)); 1661a2748737SPierre Jolivet } 1662a2748737SPierre Jolivet if (cend - cbegin != a->cmat->cmap->N) { 16639566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&a->cmat->cmap)); 16649566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &a->cmat->cmap)); 16659566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(a->cmat->cmap, cend - cbegin)); 16669566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(a->cmat->cmap)); 16675ea7661aSPierre Jolivet } 1668a2748737SPierre Jolivet } 1669616b8fbbSStefano Zampini c = (Mat_MPIDense *)a->cmat->data; 16705f80ce2aSJacob Faibussowitsch PetscCheck(!c->A, comm, PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 1671a2748737SPierre Jolivet PetscCall(MatDenseGetSubMatrix(a->A, pbegin, pend, cbegin, cend, &c->A)); 16723faff063SStefano Zampini 1673616b8fbbSStefano Zampini a->cmat->preallocated = PETSC_TRUE; 1674616b8fbbSStefano Zampini a->cmat->assembled = PETSC_TRUE; 16753faff063SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 16763faff063SStefano Zampini a->cmat->offloadmask = c->A->offloadmask; 16773faff063SStefano Zampini #endif 16785ea7661aSPierre Jolivet a->matinuse = cbegin + 1; 16795ea7661aSPierre Jolivet *v = a->cmat; 16803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16815ea7661aSPierre Jolivet } 16825ea7661aSPierre Jolivet 168366976f2fSJacob Faibussowitsch static PetscErrorCode MatDenseRestoreSubMatrix_MPIDense(Mat A, Mat *v) 1684d71ae5a4SJacob Faibussowitsch { 16855ea7661aSPierre Jolivet Mat_MPIDense *a = (Mat_MPIDense *)A->data; 1686616b8fbbSStefano Zampini Mat_MPIDense *c; 16875ea7661aSPierre Jolivet 16885ea7661aSPierre Jolivet PetscFunctionBegin; 16895f80ce2aSJacob Faibussowitsch PetscCheck(a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseGetSubMatrix() first"); 16905f80ce2aSJacob Faibussowitsch PetscCheck(a->cmat, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing internal matrix"); 16915f80ce2aSJacob Faibussowitsch PetscCheck(*v == a->cmat, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Not the matrix obtained from MatDenseGetSubMatrix()"); 16925ea7661aSPierre Jolivet a->matinuse = 0; 1693616b8fbbSStefano Zampini c = (Mat_MPIDense *)a->cmat->data; 16949566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreSubMatrix(a->A, &c->A)); 1695742765d3SMatthew Knepley if (v) *v = NULL; 16963faff063SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 16973faff063SStefano Zampini A->offloadmask = a->A->offloadmask; 16983faff063SStefano Zampini #endif 16993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17005ea7661aSPierre Jolivet } 17015ea7661aSPierre Jolivet 1702002bc6daSRichard Tran Mills /*MC 1703002bc6daSRichard Tran Mills MATMPIDENSE - MATMPIDENSE = "mpidense" - A matrix type to be used for distributed dense matrices. 1704002bc6daSRichard Tran Mills 17052ef1f0ffSBarry Smith Options Database Key: 170611a5261eSBarry Smith . -mat_type mpidense - sets the matrix type to `MATMPIDENSE` during a call to `MatSetFromOptions()` 1707002bc6daSRichard Tran Mills 1708002bc6daSRichard Tran Mills Level: beginner 1709002bc6daSRichard Tran Mills 17101cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateDense()`, `MATSEQDENSE`, `MATDENSE` 1711002bc6daSRichard Tran Mills M*/ 17124742e46bSJacob Faibussowitsch PetscErrorCode MatCreate_MPIDense(Mat mat) 1713d71ae5a4SJacob Faibussowitsch { 1714273d9f13SBarry Smith Mat_MPIDense *a; 1715273d9f13SBarry Smith 1716273d9f13SBarry Smith PetscFunctionBegin; 17174dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&a)); 1718b0a32e0cSBarry Smith mat->data = (void *)a; 1719aea10558SJacob Faibussowitsch mat->ops[0] = MatOps_Values; 1720273d9f13SBarry Smith 1721273d9f13SBarry Smith mat->insertmode = NOT_SET_VALUES; 1722273d9f13SBarry Smith 1723273d9f13SBarry Smith /* build cache for off array entries formed */ 1724273d9f13SBarry Smith a->donotstash = PETSC_FALSE; 17252205254eSKarl Rupp 17269566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)mat), 1, &mat->stash)); 1727273d9f13SBarry Smith 1728273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 1729f4259b30SLisandro Dalcin a->lvec = NULL; 1730f4259b30SLisandro Dalcin a->Mvctx = NULL; 1731273d9f13SBarry Smith a->roworiented = PETSC_TRUE; 1732273d9f13SBarry Smith 17339566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetLDA_C", MatDenseGetLDA_MPIDense)); 17349566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseSetLDA_C", MatDenseSetLDA_MPIDense)); 17359566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetArray_C", MatDenseGetArray_MPIDense)); 17369566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreArray_C", MatDenseRestoreArray_MPIDense)); 17379566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetArrayRead_C", MatDenseGetArrayRead_MPIDense)); 17389566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreArrayRead_C", MatDenseRestoreArrayRead_MPIDense)); 17399566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetArrayWrite_C", MatDenseGetArrayWrite_MPIDense)); 17409566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreArrayWrite_C", MatDenseRestoreArrayWrite_MPIDense)); 17419566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDensePlaceArray_C", MatDensePlaceArray_MPIDense)); 17429566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseResetArray_C", MatDenseResetArray_MPIDense)); 17439566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseReplaceArray_C", MatDenseReplaceArray_MPIDense)); 17449566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVec_C", MatDenseGetColumnVec_MPIDense)); 17459566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVec_C", MatDenseRestoreColumnVec_MPIDense)); 17469566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVecRead_C", MatDenseGetColumnVecRead_MPIDense)); 17479566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVecRead_C", MatDenseRestoreColumnVecRead_MPIDense)); 17489566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVecWrite_C", MatDenseGetColumnVecWrite_MPIDense)); 17499566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVecWrite_C", MatDenseRestoreColumnVecWrite_MPIDense)); 17509566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetSubMatrix_C", MatDenseGetSubMatrix_MPIDense)); 17519566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreSubMatrix_C", MatDenseRestoreSubMatrix_MPIDense)); 17529566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpidense_C", MatConvert_MPIAIJ_MPIDense)); 17539566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_mpiaij_C", MatConvert_MPIDense_MPIAIJ)); 17548baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 17559566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_elemental_C", MatConvert_MPIDense_Elemental)); 17568baccfbdSHong Zhang #endif 1757d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 17589566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_scalapack_C", MatConvert_Dense_ScaLAPACK)); 1759d24d4204SJose E. Roman #endif 1760637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 17619566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_mpidensecuda_C", MatConvert_MPIDense_MPIDenseCUDA)); 1762637a0070SStefano Zampini #endif 17639566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIDenseSetPreallocation_C", MatMPIDenseSetPreallocation_MPIDense)); 17649566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpidense_C", MatProductSetFromOptions_MPIAIJ_MPIDense)); 17659566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidense_mpiaij_C", MatProductSetFromOptions_MPIDense_MPIAIJ)); 17666718818eSStefano Zampini #if defined(PETSC_HAVE_CUDA) 17679566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaijcusparse_mpidense_C", MatProductSetFromOptions_MPIAIJ_MPIDense)); 17689566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidense_mpiaijcusparse_C", MatProductSetFromOptions_MPIDense_MPIAIJ)); 17696718818eSStefano Zampini #endif 177047d993e7Ssuyashtn #if defined(PETSC_HAVE_HIP) 177147d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_mpidensehip_C", MatConvert_MPIDense_MPIDenseHIP)); 177247d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaijhipsparse_mpidense_C", MatProductSetFromOptions_MPIAIJ_MPIDense)); 177347d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidense_mpiaijhipsparse_C", MatProductSetFromOptions_MPIDense_MPIAIJ)); 177447d993e7Ssuyashtn #endif 17759566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumn_C", MatDenseGetColumn_MPIDense)); 17769566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumn_C", MatDenseRestoreColumn_MPIDense)); 17770be0d8bdSHansol Suh PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMultAddColumnRange_C", MatMultAddColumnRange_MPIDense)); 17780be0d8bdSHansol Suh PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMultHermitianTransposeColumnRange_C", MatMultHermitianTransposeColumnRange_MPIDense)); 17790be0d8bdSHansol Suh PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMultHermitianTransposeAddColumnRange_C", MatMultHermitianTransposeAddColumnRange_MPIDense)); 17809566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)mat, MATMPIDENSE)); 17813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1782273d9f13SBarry Smith } 1783273d9f13SBarry Smith 1784209238afSKris Buschelman /*MC 1785002d173eSKris Buschelman MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices. 1786209238afSKris Buschelman 178711a5261eSBarry Smith This matrix type is identical to `MATSEQDENSE` when constructed with a single process communicator, 178811a5261eSBarry Smith and `MATMPIDENSE` otherwise. 1789209238afSKris Buschelman 17902ef1f0ffSBarry Smith Options Database Key: 179111a5261eSBarry Smith . -mat_type dense - sets the matrix type to `MATDENSE` during a call to `MatSetFromOptions()` 1792209238afSKris Buschelman 1793209238afSKris Buschelman Level: beginner 1794209238afSKris Buschelman 17951cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQDENSE`, `MATMPIDENSE`, `MATDENSECUDA`, `MATDENSEHIP` 17966947451fSStefano Zampini M*/ 17976947451fSStefano Zampini 17985d83a8b1SBarry Smith /*@ 1799273d9f13SBarry Smith MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries 1800273d9f13SBarry Smith 18018f490ea3SStefano Zampini Collective 1802273d9f13SBarry Smith 1803273d9f13SBarry Smith Input Parameters: 1804fe59aa6dSJacob Faibussowitsch + B - the matrix 18052ef1f0ffSBarry Smith - data - optional location of matrix data. Set to `NULL` for PETSc 1806273d9f13SBarry Smith to control all matrix memory allocation. 1807273d9f13SBarry Smith 18082ef1f0ffSBarry Smith Level: intermediate 18092ef1f0ffSBarry Smith 1810273d9f13SBarry Smith Notes: 18112ef1f0ffSBarry Smith The dense format is fully compatible with standard Fortran 1812273d9f13SBarry Smith storage by columns. 1813273d9f13SBarry Smith 1814273d9f13SBarry Smith The data input variable is intended primarily for Fortran programmers 1815273d9f13SBarry Smith who wish to allocate their own matrix memory space. Most users should 18162ef1f0ffSBarry Smith set `data` to `NULL`. 1817273d9f13SBarry Smith 18181cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIDENSE`, `MatCreate()`, `MatCreateSeqDense()`, `MatSetValues()` 1819273d9f13SBarry Smith @*/ 1820d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIDenseSetPreallocation(Mat B, PetscScalar *data) 1821d71ae5a4SJacob Faibussowitsch { 1822273d9f13SBarry Smith PetscFunctionBegin; 1823d5ea218eSStefano Zampini PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 1824cac4c232SBarry Smith PetscTryMethod(B, "MatMPIDenseSetPreallocation_C", (Mat, PetscScalar *), (B, data)); 18253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1826273d9f13SBarry Smith } 1827273d9f13SBarry Smith 1828d3042a70SBarry Smith /*@ 182911a5261eSBarry Smith MatDensePlaceArray - Allows one to replace the array in a `MATDENSE` matrix with an 1830d3042a70SBarry Smith array provided by the user. This is useful to avoid copying an array 1831d3042a70SBarry Smith into a matrix 1832d3042a70SBarry Smith 1833d3042a70SBarry Smith Not Collective 1834d3042a70SBarry Smith 1835d3042a70SBarry Smith Input Parameters: 1836d3042a70SBarry Smith + mat - the matrix 1837d3042a70SBarry Smith - array - the array in column major order 1838d3042a70SBarry Smith 18392ef1f0ffSBarry Smith Level: developer 18402ef1f0ffSBarry Smith 184111a5261eSBarry Smith Note: 184211a5261eSBarry Smith You can return to the original array with a call to `MatDenseResetArray()`. The user is responsible for freeing this array; it will not be 1843d3042a70SBarry Smith freed when the matrix is destroyed. 1844d3042a70SBarry Smith 18451cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MatDenseGetArray()`, `MatDenseResetArray()`, `VecPlaceArray()`, `VecGetArray()`, `VecRestoreArray()`, `VecReplaceArray()`, `VecResetArray()`, 184611a5261eSBarry Smith `MatDenseReplaceArray()` 1847d3042a70SBarry Smith @*/ 1848d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDensePlaceArray(Mat mat, const PetscScalar *array) 1849d71ae5a4SJacob Faibussowitsch { 1850d3042a70SBarry Smith PetscFunctionBegin; 1851d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 1852cac4c232SBarry Smith PetscUseMethod(mat, "MatDensePlaceArray_C", (Mat, const PetscScalar *), (mat, array)); 18539566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 185447d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) 1855637a0070SStefano Zampini mat->offloadmask = PETSC_OFFLOAD_CPU; 1856637a0070SStefano Zampini #endif 18573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1858d3042a70SBarry Smith } 1859d3042a70SBarry Smith 1860d3042a70SBarry Smith /*@ 186111a5261eSBarry Smith MatDenseResetArray - Resets the matrix array to that it previously had before the call to `MatDensePlaceArray()` 1862d3042a70SBarry Smith 1863d3042a70SBarry Smith Not Collective 1864d3042a70SBarry Smith 18652fe279fdSBarry Smith Input Parameter: 1866d3042a70SBarry Smith . mat - the matrix 1867d3042a70SBarry Smith 18682ef1f0ffSBarry Smith Level: developer 18692ef1f0ffSBarry Smith 187011a5261eSBarry Smith Note: 187111a5261eSBarry Smith You can only call this after a call to `MatDensePlaceArray()` 1872d3042a70SBarry Smith 18731cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MatDenseGetArray()`, `MatDensePlaceArray()`, `VecPlaceArray()`, `VecGetArray()`, `VecRestoreArray()`, `VecReplaceArray()`, `VecResetArray()` 1874d3042a70SBarry Smith @*/ 1875d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseResetArray(Mat mat) 1876d71ae5a4SJacob Faibussowitsch { 1877d3042a70SBarry Smith PetscFunctionBegin; 1878d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 1879cac4c232SBarry Smith PetscUseMethod(mat, "MatDenseResetArray_C", (Mat), (mat)); 18809566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 18813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1882d3042a70SBarry Smith } 1883d3042a70SBarry Smith 1884d5ea218eSStefano Zampini /*@ 1885d5ea218eSStefano Zampini MatDenseReplaceArray - Allows one to replace the array in a dense matrix with an 1886d5ea218eSStefano Zampini array provided by the user. This is useful to avoid copying an array 1887d5ea218eSStefano Zampini into a matrix 1888d5ea218eSStefano Zampini 1889d5ea218eSStefano Zampini Not Collective 1890d5ea218eSStefano Zampini 1891d5ea218eSStefano Zampini Input Parameters: 1892d5ea218eSStefano Zampini + mat - the matrix 1893d5ea218eSStefano Zampini - array - the array in column major order 1894d5ea218eSStefano Zampini 18952ef1f0ffSBarry Smith Level: developer 18962ef1f0ffSBarry Smith 189711a5261eSBarry Smith Note: 189811a5261eSBarry Smith The memory passed in MUST be obtained with `PetscMalloc()` and CANNOT be 1899d5ea218eSStefano Zampini freed by the user. It will be freed when the matrix is destroyed. 1900d5ea218eSStefano Zampini 19011cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatDensePlaceArray()`, `MatDenseGetArray()`, `VecReplaceArray()` 1902d5ea218eSStefano Zampini @*/ 1903d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseReplaceArray(Mat mat, const PetscScalar *array) 1904d71ae5a4SJacob Faibussowitsch { 1905d5ea218eSStefano Zampini PetscFunctionBegin; 1906d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 1907cac4c232SBarry Smith PetscUseMethod(mat, "MatDenseReplaceArray_C", (Mat, const PetscScalar *), (mat, array)); 19089566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 190947d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) 1910d5ea218eSStefano Zampini mat->offloadmask = PETSC_OFFLOAD_CPU; 1911d5ea218eSStefano Zampini #endif 19123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1913d5ea218eSStefano Zampini } 1914d5ea218eSStefano Zampini 19155d83a8b1SBarry Smith /*@ 191611a5261eSBarry Smith MatCreateDense - Creates a matrix in `MATDENSE` format. 19178965ea79SLois Curfman McInnes 1918d083f849SBarry Smith Collective 1919db81eaa0SLois Curfman McInnes 19208965ea79SLois Curfman McInnes Input Parameters: 1921db81eaa0SLois Curfman McInnes + comm - MPI communicator 19222ef1f0ffSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if `M` is given) 19232ef1f0ffSBarry Smith . n - number of local columns (or `PETSC_DECIDE` to have calculated if `N` is given) 19242ef1f0ffSBarry Smith . M - number of global rows (or `PETSC_DECIDE` to have calculated if `m` is given) 19252ef1f0ffSBarry Smith . N - number of global columns (or `PETSC_DECIDE` to have calculated if `n` is given) 19262ef1f0ffSBarry Smith - data - optional location of matrix data. Set data to `NULL` (`PETSC_NULL_SCALAR` for Fortran users) for PETSc 1927dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 19288965ea79SLois Curfman McInnes 19298965ea79SLois Curfman McInnes Output Parameter: 1930477f1c0bSLois Curfman McInnes . A - the matrix 19318965ea79SLois Curfman McInnes 19322ef1f0ffSBarry Smith Level: intermediate 19332ef1f0ffSBarry Smith 1934b259b22eSLois Curfman McInnes Notes: 19352ef1f0ffSBarry Smith The dense format is fully compatible with standard Fortran 193639ddd567SLois Curfman McInnes storage by columns. 193711a5261eSBarry Smith 193811a5261eSBarry Smith Although local portions of the matrix are stored in column-major 1939002bc6daSRichard Tran Mills order, the matrix is partitioned across MPI ranks by row. 19408965ea79SLois Curfman McInnes 194118f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 194218f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 19432ef1f0ffSBarry Smith set `data` to `NULL` (`PETSC_NULL_SCALAR` for Fortran users). 194418f449edSLois Curfman McInnes 19458965ea79SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 19468965ea79SLois Curfman McInnes (possibly both). 19478965ea79SLois Curfman McInnes 19481cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MatCreate()`, `MatCreateSeqDense()`, `MatSetValues()` 19498965ea79SLois Curfman McInnes @*/ 1950d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateDense(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscScalar *data, Mat *A) 1951d71ae5a4SJacob Faibussowitsch { 19523a40ed3dSBarry Smith PetscFunctionBegin; 19539566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 19549566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 19556f08ad05SPierre Jolivet PetscCall(MatSetType(*A, MATDENSE)); 19569566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(*A, data)); 19576f08ad05SPierre Jolivet PetscCall(MatMPIDenseSetPreallocation(*A, data)); 19583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 19598965ea79SLois Curfman McInnes } 19608965ea79SLois Curfman McInnes 1961d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDuplicate_MPIDense(Mat A, MatDuplicateOption cpvalues, Mat *newmat) 1962d71ae5a4SJacob Faibussowitsch { 19638965ea79SLois Curfman McInnes Mat mat; 19643501a2bdSLois Curfman McInnes Mat_MPIDense *a, *oldmat = (Mat_MPIDense *)A->data; 19658965ea79SLois Curfman McInnes 19663a40ed3dSBarry Smith PetscFunctionBegin; 1967f4259b30SLisandro Dalcin *newmat = NULL; 19689566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &mat)); 19699566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N)); 19709566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)A)->type_name)); 1971834f8fabSBarry Smith a = (Mat_MPIDense *)mat->data; 19725aa7edbeSHong Zhang 1973d5f3da31SBarry Smith mat->factortype = A->factortype; 1974c456f294SBarry Smith mat->assembled = PETSC_TRUE; 1975273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 19768965ea79SLois Curfman McInnes 1977e0fa3b82SLois Curfman McInnes mat->insertmode = NOT_SET_VALUES; 19783782ba37SSatish Balay a->donotstash = oldmat->donotstash; 1979e04c1aa4SHong Zhang 19809566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->rmap, &mat->rmap)); 19819566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->cmap, &mat->cmap)); 19828965ea79SLois Curfman McInnes 19839566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 198401b82886SBarry Smith 19858965ea79SLois Curfman McInnes *newmat = mat; 19863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 19878965ea79SLois Curfman McInnes } 19888965ea79SLois Curfman McInnes 198966976f2fSJacob Faibussowitsch static PetscErrorCode MatLoad_MPIDense(Mat newMat, PetscViewer viewer) 1990d71ae5a4SJacob Faibussowitsch { 199187d5ce66SSatish Balay PetscBool isbinary; 199287d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 199387d5ce66SSatish Balay PetscBool ishdf5; 199487d5ce66SSatish Balay #endif 1995eb91f321SVaclav Hapla 1996eb91f321SVaclav Hapla PetscFunctionBegin; 1997eb91f321SVaclav Hapla PetscValidHeaderSpecific(newMat, MAT_CLASSID, 1); 1998eb91f321SVaclav Hapla PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 1999eb91f321SVaclav Hapla /* force binary viewer to load .info file if it has not yet done so */ 20009566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 20019566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 200287d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 20039566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 200487d5ce66SSatish Balay #endif 2005eb91f321SVaclav Hapla if (isbinary) { 20069566063dSJacob Faibussowitsch PetscCall(MatLoad_Dense_Binary(newMat, viewer)); 2007eb91f321SVaclav Hapla #if defined(PETSC_HAVE_HDF5) 200887d5ce66SSatish Balay } else if (ishdf5) { 20099566063dSJacob Faibussowitsch PetscCall(MatLoad_Dense_HDF5(newMat, viewer)); 2010eb91f321SVaclav Hapla #endif 201198921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)newMat)->type_name); 20123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2013eb91f321SVaclav Hapla } 2014eb91f321SVaclav Hapla 2015d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatEqual_MPIDense(Mat A, Mat B, PetscBool *flag) 2016d71ae5a4SJacob Faibussowitsch { 20176e4ee0c6SHong Zhang Mat_MPIDense *matB = (Mat_MPIDense *)B->data, *matA = (Mat_MPIDense *)A->data; 20186e4ee0c6SHong Zhang Mat a, b; 201990ace30eSBarry Smith 20206e4ee0c6SHong Zhang PetscFunctionBegin; 20216e4ee0c6SHong Zhang a = matA->A; 20226e4ee0c6SHong Zhang b = matB->A; 20232cf15c64SPierre Jolivet PetscCall(MatEqual(a, b, flag)); 2024462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 20253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 20266e4ee0c6SHong Zhang } 202790ace30eSBarry Smith 202866976f2fSJacob Faibussowitsch static PetscErrorCode MatDestroy_MatTransMatMult_MPIDense_MPIDense(void *data) 2029d71ae5a4SJacob Faibussowitsch { 20306718818eSStefano Zampini Mat_TransMatMultDense *atb = (Mat_TransMatMultDense *)data; 2031baa3c1c6SHong Zhang 2032baa3c1c6SHong Zhang PetscFunctionBegin; 20339566063dSJacob Faibussowitsch PetscCall(PetscFree2(atb->sendbuf, atb->recvcounts)); 20349566063dSJacob Faibussowitsch PetscCall(MatDestroy(&atb->atb)); 20359566063dSJacob Faibussowitsch PetscCall(PetscFree(atb)); 20363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2037baa3c1c6SHong Zhang } 2038baa3c1c6SHong Zhang 203966976f2fSJacob Faibussowitsch static PetscErrorCode MatDestroy_MatMatTransMult_MPIDense_MPIDense(void *data) 2040d71ae5a4SJacob Faibussowitsch { 20416718818eSStefano Zampini Mat_MatTransMultDense *abt = (Mat_MatTransMultDense *)data; 2042cc48ffa7SToby Isaac 2043cc48ffa7SToby Isaac PetscFunctionBegin; 20449566063dSJacob Faibussowitsch PetscCall(PetscFree2(abt->buf[0], abt->buf[1])); 20459566063dSJacob Faibussowitsch PetscCall(PetscFree2(abt->recvcounts, abt->recvdispls)); 20469566063dSJacob Faibussowitsch PetscCall(PetscFree(abt)); 20473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2048cc48ffa7SToby Isaac } 2049cc48ffa7SToby Isaac 2050d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat A, Mat B, Mat C) 2051d71ae5a4SJacob Faibussowitsch { 2052baa3c1c6SHong Zhang Mat_MPIDense *a = (Mat_MPIDense *)A->data, *b = (Mat_MPIDense *)B->data, *c = (Mat_MPIDense *)C->data; 20536718818eSStefano Zampini Mat_TransMatMultDense *atb; 2054cb20be35SHong Zhang MPI_Comm comm; 20556718818eSStefano Zampini PetscMPIInt size, *recvcounts; 20566718818eSStefano Zampini PetscScalar *carray, *sendbuf; 2057637a0070SStefano Zampini const PetscScalar *atbarray; 2058a1f9a5e6SStefano Zampini PetscInt i, cN = C->cmap->N, proc, k, j, lda; 2059e68c0b26SHong Zhang const PetscInt *ranges; 2060cb20be35SHong Zhang 2061cb20be35SHong Zhang PetscFunctionBegin; 20626718818eSStefano Zampini MatCheckProduct(C, 3); 20635f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 20646718818eSStefano Zampini atb = (Mat_TransMatMultDense *)C->product->data; 20656718818eSStefano Zampini recvcounts = atb->recvcounts; 20666718818eSStefano Zampini sendbuf = atb->sendbuf; 20676718818eSStefano Zampini 20689566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 20699566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 2070e68c0b26SHong Zhang 2071c5ef1628SHong Zhang /* compute atbarray = aseq^T * bseq */ 2072fb842aefSJose E. Roman PetscCall(MatTransposeMatMult(a->A, b->A, atb->atb ? MAT_REUSE_MATRIX : MAT_INITIAL_MATRIX, PETSC_DETERMINE, &atb->atb)); 2073cb20be35SHong Zhang 20749566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRanges(C, &ranges)); 2075cb20be35SHong Zhang 2076660d5466SHong Zhang /* arrange atbarray into sendbuf */ 20779566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(atb->atb, &atbarray)); 20789566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(atb->atb, &lda)); 2079637a0070SStefano Zampini for (proc = 0, k = 0; proc < size; proc++) { 2080baa3c1c6SHong Zhang for (j = 0; j < cN; j++) { 2081a1f9a5e6SStefano Zampini for (i = ranges[proc]; i < ranges[proc + 1]; i++) sendbuf[k++] = atbarray[i + j * lda]; 2082cb20be35SHong Zhang } 2083cb20be35SHong Zhang } 20849566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(atb->atb, &atbarray)); 2085637a0070SStefano Zampini 2086c5ef1628SHong Zhang /* sum all atbarray to local values of C */ 20879566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(c->A, &carray)); 20889566063dSJacob Faibussowitsch PetscCallMPI(MPI_Reduce_scatter(sendbuf, carray, recvcounts, MPIU_SCALAR, MPIU_SUM, comm)); 20899566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(c->A, &carray)); 209067af85e8SPierre Jolivet PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 20919566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 20929566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 20933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2094cb20be35SHong Zhang } 2095cb20be35SHong Zhang 2096d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat A, Mat B, PetscReal fill, Mat C) 2097d71ae5a4SJacob Faibussowitsch { 2098cb20be35SHong Zhang MPI_Comm comm; 2099baa3c1c6SHong Zhang PetscMPIInt size; 2100660d5466SHong Zhang PetscInt cm = A->cmap->n, cM, cN = B->cmap->N; 2101baa3c1c6SHong Zhang Mat_TransMatMultDense *atb; 210247d993e7Ssuyashtn PetscBool cisdense = PETSC_FALSE; 21030acaeb71SStefano Zampini const PetscInt *ranges; 2104cb20be35SHong Zhang 2105cb20be35SHong Zhang PetscFunctionBegin; 21068f83a4d9SJacob Faibussowitsch MatCheckProduct(C, 4); 21075f80ce2aSJacob Faibussowitsch PetscCheck(!C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty"); 21089566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 2109cb20be35SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) { 211098921bdaSJacob Faibussowitsch SETERRQ(comm, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != B (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->rstart, A->rmap->rend, B->rmap->rstart, B->rmap->rend); 2111cb20be35SHong Zhang } 2112cb20be35SHong Zhang 21134222ddf1SHong Zhang /* create matrix product C */ 21149566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, cm, B->cmap->n, A->cmap->N, B->cmap->N)); 211547d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) 21169566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATMPIDENSE, MATMPIDENSECUDA, "")); 211747d993e7Ssuyashtn #endif 211847d993e7Ssuyashtn #if defined(PETSC_HAVE_HIP) 211947d993e7Ssuyashtn PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATMPIDENSE, MATMPIDENSEHIP, "")); 212047d993e7Ssuyashtn #endif 212148a46eb9SPierre Jolivet if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)A)->type_name)); 21229566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 2123baa3c1c6SHong Zhang 21244222ddf1SHong Zhang /* create data structure for reuse C */ 21259566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 21269566063dSJacob Faibussowitsch PetscCall(PetscNew(&atb)); 21274222ddf1SHong Zhang cM = C->rmap->N; 21289566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(cM * cN, &atb->sendbuf, size, &atb->recvcounts)); 21299566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRanges(C, &ranges)); 21306497c311SBarry Smith for (PetscMPIInt i = 0; i < size; i++) PetscCall(PetscMPIIntCast((ranges[i + 1] - ranges[i]) * cN, &atb->recvcounts[i])); 21316718818eSStefano Zampini C->product->data = atb; 21326718818eSStefano Zampini C->product->destroy = MatDestroy_MatTransMatMult_MPIDense_MPIDense; 21333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2134cb20be35SHong Zhang } 2135cb20be35SHong Zhang 2136d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat A, Mat B, PetscReal fill, Mat C) 2137d71ae5a4SJacob Faibussowitsch { 2138cc48ffa7SToby Isaac MPI_Comm comm; 2139cc48ffa7SToby Isaac PetscMPIInt i, size; 2140cc48ffa7SToby Isaac PetscInt maxRows, bufsiz; 2141cc48ffa7SToby Isaac PetscMPIInt tag; 21424222ddf1SHong Zhang PetscInt alg; 2143cc48ffa7SToby Isaac Mat_MatTransMultDense *abt; 21444222ddf1SHong Zhang Mat_Product *product = C->product; 21454222ddf1SHong Zhang PetscBool flg; 2146cc48ffa7SToby Isaac 2147cc48ffa7SToby Isaac PetscFunctionBegin; 21486718818eSStefano Zampini MatCheckProduct(C, 4); 21495f80ce2aSJacob Faibussowitsch PetscCheck(!C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty"); 21504222ddf1SHong Zhang /* check local size of A and B */ 21515f80ce2aSJacob Faibussowitsch PetscCheck(A->cmap->n == B->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local column dimensions are incompatible, A (%" PetscInt_FMT ") != B (%" PetscInt_FMT ")", A->cmap->n, B->cmap->n); 2152cc48ffa7SToby Isaac 21539566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg, "allgatherv", &flg)); 2154637a0070SStefano Zampini alg = flg ? 0 : 1; 2155cc48ffa7SToby Isaac 21564222ddf1SHong Zhang /* setup matrix product C */ 21579566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, A->rmap->n, B->rmap->n, A->rmap->N, B->rmap->N)); 21589566063dSJacob Faibussowitsch PetscCall(MatSetType(C, MATMPIDENSE)); 21599566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 21609566063dSJacob Faibussowitsch PetscCall(PetscObjectGetNewTag((PetscObject)C, &tag)); 21614222ddf1SHong Zhang 21624222ddf1SHong Zhang /* create data structure for reuse C */ 21639566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C, &comm)); 21649566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 21659566063dSJacob Faibussowitsch PetscCall(PetscNew(&abt)); 2166cc48ffa7SToby Isaac abt->tag = tag; 2167faa55883SToby Isaac abt->alg = alg; 2168faa55883SToby Isaac switch (alg) { 21694222ddf1SHong Zhang case 1: /* alg: "cyclic" */ 2170*57508eceSPierre Jolivet for (maxRows = 0, i = 0; i < size; i++) maxRows = PetscMax(maxRows, B->rmap->range[i + 1] - B->rmap->range[i]); 2171cc48ffa7SToby Isaac bufsiz = A->cmap->N * maxRows; 2172f4f49eeaSPierre Jolivet PetscCall(PetscMalloc2(bufsiz, &abt->buf[0], bufsiz, &abt->buf[1])); 2173faa55883SToby Isaac break; 21744222ddf1SHong Zhang default: /* alg: "allgatherv" */ 2175f4f49eeaSPierre Jolivet PetscCall(PetscMalloc2(B->rmap->n * B->cmap->N, &abt->buf[0], B->rmap->N * B->cmap->N, &abt->buf[1])); 2176f4f49eeaSPierre Jolivet PetscCall(PetscMalloc2(size, &abt->recvcounts, size + 1, &abt->recvdispls)); 21776497c311SBarry Smith for (i = 0; i <= size; i++) PetscCall(PetscMPIIntCast(B->rmap->range[i] * A->cmap->N, &abt->recvdispls[i])); 21786497c311SBarry Smith for (i = 0; i < size; i++) PetscCall(PetscMPIIntCast(abt->recvdispls[i + 1] - abt->recvdispls[i], &abt->recvcounts[i])); 2179faa55883SToby Isaac break; 2180faa55883SToby Isaac } 2181cc48ffa7SToby Isaac 21826718818eSStefano Zampini C->product->data = abt; 21836718818eSStefano Zampini C->product->destroy = MatDestroy_MatMatTransMult_MPIDense_MPIDense; 21844222ddf1SHong Zhang C->ops->mattransposemultnumeric = MatMatTransposeMultNumeric_MPIDense_MPIDense; 21853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2186cc48ffa7SToby Isaac } 2187cc48ffa7SToby Isaac 2188d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(Mat A, Mat B, Mat C) 2189d71ae5a4SJacob Faibussowitsch { 2190cc48ffa7SToby Isaac Mat_MPIDense *a = (Mat_MPIDense *)A->data, *b = (Mat_MPIDense *)B->data, *c = (Mat_MPIDense *)C->data; 21916718818eSStefano Zampini Mat_MatTransMultDense *abt; 2192cc48ffa7SToby Isaac MPI_Comm comm; 21936497c311SBarry Smith PetscMPIInt rank, size, sendto, recvfrom, recvisfrom; 2194f4259b30SLisandro Dalcin PetscScalar *sendbuf, *recvbuf = NULL, *cv; 21956497c311SBarry Smith PetscInt i, cK = A->cmap->N, sendsiz, recvsiz, k, j, bn; 2196cc48ffa7SToby Isaac PetscScalar _DOne = 1.0, _DZero = 0.0; 2197637a0070SStefano Zampini const PetscScalar *av, *bv; 219823fff9afSBarry Smith PetscBLASInt cm, cn, ck, alda, blda = 0, clda; 2199cc48ffa7SToby Isaac MPI_Request reqs[2]; 2200cc48ffa7SToby Isaac const PetscInt *ranges; 2201cc48ffa7SToby Isaac 2202cc48ffa7SToby Isaac PetscFunctionBegin; 22036718818eSStefano Zampini MatCheckProduct(C, 3); 22045f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 22056718818eSStefano Zampini abt = (Mat_MatTransMultDense *)C->product->data; 22069566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C, &comm)); 22079566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 22089566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 22099566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A, &av)); 22109566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(b->A, &bv)); 22119566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(c->A, &cv)); 22129566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &i)); 22139566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i, &alda)); 22149566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(b->A, &i)); 22159566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i, &blda)); 22169566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(c->A, &i)); 22179566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i, &clda)); 22189566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRanges(B, &ranges)); 2219cc48ffa7SToby Isaac bn = B->rmap->n; 2220637a0070SStefano Zampini if (blda == bn) { 2221637a0070SStefano Zampini sendbuf = (PetscScalar *)bv; 2222cc48ffa7SToby Isaac } else { 2223cc48ffa7SToby Isaac sendbuf = abt->buf[0]; 2224cc48ffa7SToby Isaac for (k = 0, i = 0; i < cK; i++) { 2225ad540459SPierre Jolivet for (j = 0; j < bn; j++, k++) sendbuf[k] = bv[i * blda + j]; 2226cc48ffa7SToby Isaac } 2227cc48ffa7SToby Isaac } 2228cc48ffa7SToby Isaac if (size > 1) { 2229cc48ffa7SToby Isaac sendto = (rank + size - 1) % size; 2230cc48ffa7SToby Isaac recvfrom = (rank + size + 1) % size; 2231cc48ffa7SToby Isaac } else { 2232cc48ffa7SToby Isaac sendto = recvfrom = 0; 2233cc48ffa7SToby Isaac } 22349566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(cK, &ck)); 22359566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(c->A->rmap->n, &cm)); 2236cc48ffa7SToby Isaac recvisfrom = rank; 2237cc48ffa7SToby Isaac for (i = 0; i < size; i++) { 2238cc48ffa7SToby Isaac /* we have finished receiving in sending, bufs can be read/modified */ 22396497c311SBarry Smith PetscMPIInt nextrecvisfrom = (recvisfrom + 1) % size; /* which process the next recvbuf will originate on */ 2240cc48ffa7SToby Isaac PetscInt nextbn = ranges[nextrecvisfrom + 1] - ranges[nextrecvisfrom]; 2241cc48ffa7SToby Isaac 2242cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2243cc48ffa7SToby Isaac /* start the cyclic sends from sendbuf, to recvbuf (which will switch to sendbuf) */ 2244cc48ffa7SToby Isaac sendsiz = cK * bn; 2245cc48ffa7SToby Isaac recvsiz = cK * nextbn; 2246cc48ffa7SToby Isaac recvbuf = (i & 1) ? abt->buf[0] : abt->buf[1]; 22476497c311SBarry Smith PetscCallMPI(MPIU_Isend(sendbuf, sendsiz, MPIU_SCALAR, sendto, abt->tag, comm, &reqs[0])); 22486497c311SBarry Smith PetscCallMPI(MPIU_Irecv(recvbuf, recvsiz, MPIU_SCALAR, recvfrom, abt->tag, comm, &reqs[1])); 2249cc48ffa7SToby Isaac } 2250cc48ffa7SToby Isaac 2251cc48ffa7SToby Isaac /* local aseq * sendbuf^T */ 22529566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(ranges[recvisfrom + 1] - ranges[recvisfrom], &cn)); 2253792fecdfSBarry Smith if (cm && cn && ck) PetscCallBLAS("BLASgemm", BLASgemm_("N", "T", &cm, &cn, &ck, &_DOne, av, &alda, sendbuf, &cn, &_DZero, cv + clda * ranges[recvisfrom], &clda)); 2254cc48ffa7SToby Isaac 2255cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2256cc48ffa7SToby Isaac /* wait for the sends and receives to complete, swap sendbuf and recvbuf */ 22579566063dSJacob Faibussowitsch PetscCallMPI(MPI_Waitall(2, reqs, MPI_STATUSES_IGNORE)); 2258cc48ffa7SToby Isaac } 2259cc48ffa7SToby Isaac bn = nextbn; 2260cc48ffa7SToby Isaac recvisfrom = nextrecvisfrom; 2261cc48ffa7SToby Isaac sendbuf = recvbuf; 2262cc48ffa7SToby Isaac } 22639566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A, &av)); 22649566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(b->A, &bv)); 22659566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(c->A, &cv)); 226667af85e8SPierre Jolivet PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 22679566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 22689566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 22693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2270cc48ffa7SToby Isaac } 2271cc48ffa7SToby Isaac 2272d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(Mat A, Mat B, Mat C) 2273d71ae5a4SJacob Faibussowitsch { 2274faa55883SToby Isaac Mat_MPIDense *a = (Mat_MPIDense *)A->data, *b = (Mat_MPIDense *)B->data, *c = (Mat_MPIDense *)C->data; 22756718818eSStefano Zampini Mat_MatTransMultDense *abt; 2276faa55883SToby Isaac MPI_Comm comm; 22776497c311SBarry Smith PetscMPIInt size, ibn; 2278637a0070SStefano Zampini PetscScalar *cv, *sendbuf, *recvbuf; 2279637a0070SStefano Zampini const PetscScalar *av, *bv; 2280637a0070SStefano Zampini PetscInt blda, i, cK = A->cmap->N, k, j, bn; 2281faa55883SToby Isaac PetscScalar _DOne = 1.0, _DZero = 0.0; 2282637a0070SStefano Zampini PetscBLASInt cm, cn, ck, alda, clda; 2283faa55883SToby Isaac 2284faa55883SToby Isaac PetscFunctionBegin; 22856718818eSStefano Zampini MatCheckProduct(C, 3); 22865f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 22876718818eSStefano Zampini abt = (Mat_MatTransMultDense *)C->product->data; 22889566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 22899566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 22909566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A, &av)); 22919566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(b->A, &bv)); 22929566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(c->A, &cv)); 22939566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &i)); 22949566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i, &alda)); 22959566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(b->A, &blda)); 22969566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(c->A, &i)); 22979566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i, &clda)); 2298faa55883SToby Isaac /* copy transpose of B into buf[0] */ 2299faa55883SToby Isaac bn = B->rmap->n; 2300faa55883SToby Isaac sendbuf = abt->buf[0]; 2301faa55883SToby Isaac recvbuf = abt->buf[1]; 2302faa55883SToby Isaac for (k = 0, j = 0; j < bn; j++) { 2303ad540459SPierre Jolivet for (i = 0; i < cK; i++, k++) sendbuf[k] = bv[i * blda + j]; 2304faa55883SToby Isaac } 23059566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(b->A, &bv)); 23066497c311SBarry Smith PetscCall(PetscMPIIntCast(bn * cK, &ibn)); 23076497c311SBarry Smith PetscCallMPI(MPI_Allgatherv(sendbuf, ibn, MPIU_SCALAR, recvbuf, abt->recvcounts, abt->recvdispls, MPIU_SCALAR, comm)); 23089566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(cK, &ck)); 23099566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(c->A->rmap->n, &cm)); 23109566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(c->A->cmap->n, &cn)); 2311792fecdfSBarry Smith if (cm && cn && ck) PetscCallBLAS("BLASgemm", BLASgemm_("N", "N", &cm, &cn, &ck, &_DOne, av, &alda, recvbuf, &ck, &_DZero, cv, &clda)); 23129566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A, &av)); 23139566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(b->A, &bv)); 23149566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(c->A, &cv)); 231567af85e8SPierre Jolivet PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 23169566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 23179566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 23183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2319faa55883SToby Isaac } 2320faa55883SToby Isaac 2321d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat A, Mat B, Mat C) 2322d71ae5a4SJacob Faibussowitsch { 23236718818eSStefano Zampini Mat_MatTransMultDense *abt; 2324faa55883SToby Isaac 2325faa55883SToby Isaac PetscFunctionBegin; 23266718818eSStefano Zampini MatCheckProduct(C, 3); 23275f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 23286718818eSStefano Zampini abt = (Mat_MatTransMultDense *)C->product->data; 2329faa55883SToby Isaac switch (abt->alg) { 2330d71ae5a4SJacob Faibussowitsch case 1: 2331d71ae5a4SJacob Faibussowitsch PetscCall(MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(A, B, C)); 2332d71ae5a4SJacob Faibussowitsch break; 2333d71ae5a4SJacob Faibussowitsch default: 2334d71ae5a4SJacob Faibussowitsch PetscCall(MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(A, B, C)); 2335d71ae5a4SJacob Faibussowitsch break; 2336faa55883SToby Isaac } 23373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2338faa55883SToby Isaac } 2339faa55883SToby Isaac 234066976f2fSJacob Faibussowitsch static PetscErrorCode MatDestroy_MatMatMult_MPIDense_MPIDense(void *data) 2341d71ae5a4SJacob Faibussowitsch { 23426718818eSStefano Zampini Mat_MatMultDense *ab = (Mat_MatMultDense *)data; 2343320f2790SHong Zhang 2344320f2790SHong Zhang PetscFunctionBegin; 23459566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ab->Ce)); 23469566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ab->Ae)); 23479566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ab->Be)); 23489566063dSJacob Faibussowitsch PetscCall(PetscFree(ab)); 23493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2350320f2790SHong Zhang } 2351320f2790SHong Zhang 23525d8c7819SPierre Jolivet static PetscErrorCode MatMatMultNumeric_MPIDense_MPIDense(Mat A, Mat B, Mat C) 2353d71ae5a4SJacob Faibussowitsch { 23546718818eSStefano Zampini Mat_MatMultDense *ab; 23555d8c7819SPierre Jolivet Mat_MPIDense *mdn = (Mat_MPIDense *)A->data; 2356320f2790SHong Zhang 2357320f2790SHong Zhang PetscFunctionBegin; 23586718818eSStefano Zampini MatCheckProduct(C, 3); 23595f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Missing product data"); 23606718818eSStefano Zampini ab = (Mat_MatMultDense *)C->product->data; 23615d8c7819SPierre Jolivet if (ab->Ae && ab->Ce) { 23625d8c7819SPierre Jolivet #if PetscDefined(HAVE_ELEMENTAL) 23639566063dSJacob Faibussowitsch PetscCall(MatConvert_MPIDense_Elemental(A, MATELEMENTAL, MAT_REUSE_MATRIX, &ab->Ae)); 23649566063dSJacob Faibussowitsch PetscCall(MatConvert_MPIDense_Elemental(B, MATELEMENTAL, MAT_REUSE_MATRIX, &ab->Be)); 23659566063dSJacob Faibussowitsch PetscCall(MatMatMultNumeric_Elemental(ab->Ae, ab->Be, ab->Ce)); 23669566063dSJacob Faibussowitsch PetscCall(MatConvert(ab->Ce, MATMPIDENSE, MAT_REUSE_MATRIX, &C)); 23675d8c7819SPierre Jolivet #else 23685d8c7819SPierre Jolivet SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "PETSC_HAVE_ELEMENTAL not defined"); 23695d8c7819SPierre Jolivet #endif 23705d8c7819SPierre Jolivet } else { 23715d8c7819SPierre Jolivet const PetscScalar *read; 23725d8c7819SPierre Jolivet PetscScalar *write; 23735d8c7819SPierre Jolivet PetscInt lda; 23745d8c7819SPierre Jolivet 23755d8c7819SPierre Jolivet PetscCall(MatDenseGetLDA(B, &lda)); 23765d8c7819SPierre Jolivet PetscCall(MatDenseGetArrayRead(B, &read)); 23775d8c7819SPierre Jolivet PetscCall(MatDenseGetArrayWrite(ab->Be, &write)); 23785d8c7819SPierre Jolivet if (!mdn->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); /* cannot be done during the symbolic phase because of possible calls to MatProductReplaceMats() */ 23795d8c7819SPierre Jolivet for (PetscInt i = 0; i < C->cmap->N; ++i) { 23805d8c7819SPierre Jolivet PetscCall(PetscSFBcastBegin(mdn->Mvctx, MPIU_SCALAR, read + i * lda, write + i * ab->Be->rmap->n, MPI_REPLACE)); 23815d8c7819SPierre Jolivet PetscCall(PetscSFBcastEnd(mdn->Mvctx, MPIU_SCALAR, read + i * lda, write + i * ab->Be->rmap->n, MPI_REPLACE)); 23825d8c7819SPierre Jolivet } 23835d8c7819SPierre Jolivet PetscCall(MatDenseRestoreArrayWrite(ab->Be, &write)); 23845d8c7819SPierre Jolivet PetscCall(MatDenseRestoreArrayRead(B, &read)); 2385f4f49eeaSPierre Jolivet PetscCall(MatMatMultNumeric_SeqDense_SeqDense(((Mat_MPIDense *)A->data)->A, ab->Be, ((Mat_MPIDense *)C->data)->A)); 23865d8c7819SPierre Jolivet } 23873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2388320f2790SHong Zhang } 2389320f2790SHong Zhang 2390d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIDense(Mat A, Mat B, PetscReal fill, Mat C) 2391d71ae5a4SJacob Faibussowitsch { 23925d8c7819SPierre Jolivet Mat_Product *product = C->product; 23935d8c7819SPierre Jolivet PetscInt alg; 2394320f2790SHong Zhang Mat_MatMultDense *ab; 23955d8c7819SPierre Jolivet PetscBool flg; 2396320f2790SHong Zhang 2397320f2790SHong Zhang PetscFunctionBegin; 23986718818eSStefano Zampini MatCheckProduct(C, 4); 23995f80ce2aSJacob Faibussowitsch PetscCheck(!C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty"); 24004222ddf1SHong Zhang /* check local size of A and B */ 24015d8c7819SPierre Jolivet PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != B (%" PetscInt_FMT ", %" PetscInt_FMT ")", 24025d8c7819SPierre Jolivet A->rmap->rstart, A->rmap->rend, B->rmap->rstart, B->rmap->rend); 2403320f2790SHong Zhang 24045d8c7819SPierre Jolivet PetscCall(PetscStrcmp(product->alg, "petsc", &flg)); 24055d8c7819SPierre Jolivet alg = flg ? 0 : 1; 24064222ddf1SHong Zhang 24074222ddf1SHong Zhang /* setup C */ 24085d8c7819SPierre Jolivet PetscCall(MatSetSizes(C, A->rmap->n, B->cmap->n, A->rmap->N, B->cmap->N)); 24095d8c7819SPierre Jolivet PetscCall(MatSetType(C, MATMPIDENSE)); 24109566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 2411320f2790SHong Zhang 2412320f2790SHong Zhang /* create data structure for reuse Cdense */ 24139566063dSJacob Faibussowitsch PetscCall(PetscNew(&ab)); 24145d8c7819SPierre Jolivet 24155d8c7819SPierre Jolivet switch (alg) { 24165d8c7819SPierre Jolivet case 1: /* alg: "elemental" */ 24175d8c7819SPierre Jolivet #if PetscDefined(HAVE_ELEMENTAL) 24185d8c7819SPierre Jolivet /* create elemental matrices Ae and Be */ 24195d8c7819SPierre Jolivet PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &ab->Ae)); 24205d8c7819SPierre Jolivet PetscCall(MatSetSizes(ab->Ae, PETSC_DECIDE, PETSC_DECIDE, A->rmap->N, A->cmap->N)); 24215d8c7819SPierre Jolivet PetscCall(MatSetType(ab->Ae, MATELEMENTAL)); 24225d8c7819SPierre Jolivet PetscCall(MatSetUp(ab->Ae)); 24235d8c7819SPierre Jolivet PetscCall(MatSetOption(ab->Ae, MAT_ROW_ORIENTED, PETSC_FALSE)); 24245d8c7819SPierre Jolivet 24255d8c7819SPierre Jolivet PetscCall(MatCreate(PetscObjectComm((PetscObject)B), &ab->Be)); 24265d8c7819SPierre Jolivet PetscCall(MatSetSizes(ab->Be, PETSC_DECIDE, PETSC_DECIDE, B->rmap->N, B->cmap->N)); 24275d8c7819SPierre Jolivet PetscCall(MatSetType(ab->Be, MATELEMENTAL)); 24285d8c7819SPierre Jolivet PetscCall(MatSetUp(ab->Be)); 24295d8c7819SPierre Jolivet PetscCall(MatSetOption(ab->Be, MAT_ROW_ORIENTED, PETSC_FALSE)); 24305d8c7819SPierre Jolivet 24315d8c7819SPierre Jolivet /* compute symbolic Ce = Ae*Be */ 24325d8c7819SPierre Jolivet PetscCall(MatCreate(PetscObjectComm((PetscObject)C), &ab->Ce)); 24335d8c7819SPierre Jolivet PetscCall(MatMatMultSymbolic_Elemental(ab->Ae, ab->Be, fill, ab->Ce)); 24345d8c7819SPierre Jolivet #else 24355d8c7819SPierre Jolivet SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "PETSC_HAVE_ELEMENTAL not defined"); 24365d8c7819SPierre Jolivet #endif 24375d8c7819SPierre Jolivet break; 24385d8c7819SPierre Jolivet default: /* alg: "petsc" */ 24395d8c7819SPierre Jolivet ab->Ae = NULL; 24405d8c7819SPierre Jolivet PetscCall(MatCreateSeqDense(PETSC_COMM_SELF, A->cmap->N, B->cmap->N, NULL, &ab->Be)); 24415d8c7819SPierre Jolivet ab->Ce = NULL; 24425d8c7819SPierre Jolivet break; 24435d8c7819SPierre Jolivet } 24446718818eSStefano Zampini 24456718818eSStefano Zampini C->product->data = ab; 24466718818eSStefano Zampini C->product->destroy = MatDestroy_MatMatMult_MPIDense_MPIDense; 24474222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIDense; 24483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2449320f2790SHong Zhang } 24502ef1f0ffSBarry Smith 2451d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_AB(Mat C) 2452d71ae5a4SJacob Faibussowitsch { 24535d8c7819SPierre Jolivet Mat_Product *product = C->product; 24545d8c7819SPierre Jolivet const char *algTypes[2] = {"petsc", "elemental"}; 24555d8c7819SPierre Jolivet PetscInt alg, nalg = PetscDefined(HAVE_ELEMENTAL) ? 2 : 1; 24565d8c7819SPierre Jolivet PetscBool flg = PETSC_FALSE; 24575d8c7819SPierre Jolivet 24584d86920dSPierre Jolivet PetscFunctionBegin; 24595d8c7819SPierre Jolivet /* Set default algorithm */ 24605d8c7819SPierre Jolivet alg = 0; /* default is petsc */ 24615d8c7819SPierre Jolivet PetscCall(PetscStrcmp(product->alg, "default", &flg)); 24625d8c7819SPierre Jolivet if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 24635d8c7819SPierre Jolivet 24645d8c7819SPierre Jolivet /* Get runtime option */ 24655d8c7819SPierre Jolivet PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AB", "Mat"); 24665d8c7819SPierre Jolivet PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatProduct_AB", algTypes, nalg, algTypes[alg], &alg, &flg)); 24675d8c7819SPierre Jolivet PetscOptionsEnd(); 24685d8c7819SPierre Jolivet if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 24695d8c7819SPierre Jolivet 24704222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIDense; 24714222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 24723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2473320f2790SHong Zhang } 247486aefd0dSHong Zhang 2475d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_AtB(Mat C) 2476d71ae5a4SJacob Faibussowitsch { 24774222ddf1SHong Zhang Mat_Product *product = C->product; 24784222ddf1SHong Zhang Mat A = product->A, B = product->B; 24794222ddf1SHong Zhang 24804222ddf1SHong Zhang PetscFunctionBegin; 248107e90273SPierre Jolivet PetscCheck(A->rmap->rstart == B->rmap->rstart && A->rmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 248207e90273SPierre Jolivet A->rmap->rstart, A->rmap->rend, B->rmap->rstart, B->rmap->rend); 24836718818eSStefano Zampini C->ops->transposematmultsymbolic = MatTransposeMatMultSymbolic_MPIDense_MPIDense; 24846718818eSStefano Zampini C->ops->productsymbolic = MatProductSymbolic_AtB; 24853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24864222ddf1SHong Zhang } 24874222ddf1SHong Zhang 2488d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_ABt(Mat C) 2489d71ae5a4SJacob Faibussowitsch { 24904222ddf1SHong Zhang Mat_Product *product = C->product; 24914222ddf1SHong Zhang const char *algTypes[2] = {"allgatherv", "cyclic"}; 24924222ddf1SHong Zhang PetscInt alg, nalg = 2; 24934222ddf1SHong Zhang PetscBool flg = PETSC_FALSE; 24944222ddf1SHong Zhang 24954222ddf1SHong Zhang PetscFunctionBegin; 24964222ddf1SHong Zhang /* Set default algorithm */ 24974222ddf1SHong Zhang alg = 0; /* default is allgatherv */ 24989566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg, "default", &flg)); 249948a46eb9SPierre Jolivet if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 25004222ddf1SHong Zhang 25014222ddf1SHong Zhang /* Get runtime option */ 25024222ddf1SHong Zhang if (product->api_user) { 2503d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatTransposeMult", "Mat"); 25049566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-matmattransmult_mpidense_mpidense_via", "Algorithmic approach", "MatMatTransposeMult", algTypes, nalg, algTypes[alg], &alg, &flg)); 2505d0609cedSBarry Smith PetscOptionsEnd(); 25064222ddf1SHong Zhang } else { 2507d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_ABt", "Mat"); 25089566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatProduct_ABt", algTypes, nalg, algTypes[alg], &alg, &flg)); 2509d0609cedSBarry Smith PetscOptionsEnd(); 25104222ddf1SHong Zhang } 251148a46eb9SPierre Jolivet if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 25124222ddf1SHong Zhang 25134222ddf1SHong Zhang C->ops->mattransposemultsymbolic = MatMatTransposeMultSymbolic_MPIDense_MPIDense; 25144222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_ABt; 25153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 25164222ddf1SHong Zhang } 25174222ddf1SHong Zhang 25185d8c7819SPierre Jolivet static PetscErrorCode MatProductSetFromOptions_MPIDense(Mat C) 2519d71ae5a4SJacob Faibussowitsch { 25204222ddf1SHong Zhang Mat_Product *product = C->product; 25214222ddf1SHong Zhang 25224222ddf1SHong Zhang PetscFunctionBegin; 25234222ddf1SHong Zhang switch (product->type) { 2524d71ae5a4SJacob Faibussowitsch case MATPRODUCT_AB: 2525d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIDense_AB(C)); 2526d71ae5a4SJacob Faibussowitsch break; 2527d71ae5a4SJacob Faibussowitsch case MATPRODUCT_AtB: 2528d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIDense_AtB(C)); 2529d71ae5a4SJacob Faibussowitsch break; 2530d71ae5a4SJacob Faibussowitsch case MATPRODUCT_ABt: 2531d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIDense_ABt(C)); 2532d71ae5a4SJacob Faibussowitsch break; 2533d71ae5a4SJacob Faibussowitsch default: 2534d71ae5a4SJacob Faibussowitsch break; 25354222ddf1SHong Zhang } 25363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 25374222ddf1SHong Zhang } 2538