xref: /petsc/src/mat/impls/dense/mpi/mpidense.c (revision 5b2fa52080009d719f1c80545e2867c4a36b8e55)
1a5eb4965SSatish Balay #ifdef PETSC_RCS_HEADER
2*5b2fa520SLois Curfman McInnes static char vcid[] = "$Id: mpidense.c,v 1.120 1999/07/27 22:18:47 curfman Exp curfman $";
38965ea79SLois Curfman McInnes #endif
48965ea79SLois Curfman McInnes 
5ed3cc1f0SBarry Smith /*
6ed3cc1f0SBarry Smith    Basic functions for basic parallel dense matrices.
7ed3cc1f0SBarry Smith */
8ed3cc1f0SBarry Smith 
970f55243SBarry Smith #include "src/mat/impls/dense/mpi/mpidense.h"
10f5eb4b81SSatish Balay #include "src/vec/vecimpl.h"
118965ea79SLois Curfman McInnes 
127ef1d9bdSSatish Balay extern int MatSetUpMultiply_MPIDense(Mat);
137ef1d9bdSSatish Balay 
145615d1e5SSatish Balay #undef __FUNC__
155615d1e5SSatish Balay #define __FUNC__ "MatSetValues_MPIDense"
168f6be9afSLois Curfman McInnes int MatSetValues_MPIDense(Mat mat,int m,int *idxm,int n,int *idxn,Scalar *v,InsertMode addv)
178965ea79SLois Curfman McInnes {
1839b7565bSBarry Smith   Mat_MPIDense *A = (Mat_MPIDense *) mat->data;
1939b7565bSBarry Smith   int          ierr, i, j, rstart = A->rstart, rend = A->rend, row;
2039b7565bSBarry Smith   int          roworiented = A->roworiented;
218965ea79SLois Curfman McInnes 
223a40ed3dSBarry Smith   PetscFunctionBegin;
238965ea79SLois Curfman McInnes   for ( i=0; i<m; i++ ) {
245ef9f2a5SBarry Smith     if (idxm[i] < 0) continue;
25a8c6a408SBarry Smith     if (idxm[i] >= A->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large");
268965ea79SLois Curfman McInnes     if (idxm[i] >= rstart && idxm[i] < rend) {
278965ea79SLois Curfman McInnes       row = idxm[i] - rstart;
2839b7565bSBarry Smith       if (roworiented) {
2939b7565bSBarry Smith         ierr = MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv);CHKERRQ(ierr);
303a40ed3dSBarry Smith       } else {
318965ea79SLois Curfman McInnes         for ( j=0; j<n; j++ ) {
325ef9f2a5SBarry Smith           if (idxn[j] < 0) continue;
33a8c6a408SBarry Smith           if (idxn[j] >= A->N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Column too large");
3439b7565bSBarry Smith           ierr = MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv);CHKERRQ(ierr);
3539b7565bSBarry Smith         }
368965ea79SLois Curfman McInnes       }
373a40ed3dSBarry Smith     } else {
383782ba37SSatish Balay       if ( !A->donotstash) {
3939b7565bSBarry Smith         if (roworiented) {
408798bf22SSatish Balay           ierr = MatStashValuesRow_Private(&mat->stash,idxm[i],n,idxn,v+i*n);CHKERRQ(ierr);
41d36fbae8SSatish Balay         } else {
428798bf22SSatish Balay           ierr = MatStashValuesCol_Private(&mat->stash,idxm[i],n,idxn,v+i,m);CHKERRQ(ierr);
4339b7565bSBarry Smith         }
44b49de8d1SLois Curfman McInnes       }
45b49de8d1SLois Curfman McInnes     }
463782ba37SSatish Balay   }
473a40ed3dSBarry Smith   PetscFunctionReturn(0);
48b49de8d1SLois Curfman McInnes }
49b49de8d1SLois Curfman McInnes 
505615d1e5SSatish Balay #undef __FUNC__
515615d1e5SSatish Balay #define __FUNC__ "MatGetValues_MPIDense"
528f6be9afSLois Curfman McInnes int MatGetValues_MPIDense(Mat mat,int m,int *idxm,int n,int *idxn,Scalar *v)
53b49de8d1SLois Curfman McInnes {
54b49de8d1SLois Curfman McInnes   Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data;
55b49de8d1SLois Curfman McInnes   int          ierr, i, j, rstart = mdn->rstart, rend = mdn->rend, row;
56b49de8d1SLois Curfman McInnes 
573a40ed3dSBarry Smith   PetscFunctionBegin;
58b49de8d1SLois Curfman McInnes   for ( i=0; i<m; i++ ) {
59a8c6a408SBarry Smith     if (idxm[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative row");
60a8c6a408SBarry Smith     if (idxm[i] >= mdn->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large");
61b49de8d1SLois Curfman McInnes     if (idxm[i] >= rstart && idxm[i] < rend) {
62b49de8d1SLois Curfman McInnes       row = idxm[i] - rstart;
63b49de8d1SLois Curfman McInnes       for ( j=0; j<n; j++ ) {
64a8c6a408SBarry Smith         if (idxn[j] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative column");
65a8c6a408SBarry Smith         if (idxn[j] >= mdn->N) {
66a8c6a408SBarry Smith           SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Column too large");
67a8c6a408SBarry Smith         }
68b49de8d1SLois Curfman McInnes         ierr = MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j);CHKERRQ(ierr);
69b49de8d1SLois Curfman McInnes       }
70a8c6a408SBarry Smith     } else {
71a8c6a408SBarry Smith       SETERRQ(PETSC_ERR_SUP,0,"Only local values currently supported");
728965ea79SLois Curfman McInnes     }
738965ea79SLois Curfman McInnes   }
743a40ed3dSBarry Smith   PetscFunctionReturn(0);
758965ea79SLois Curfman McInnes }
768965ea79SLois Curfman McInnes 
775615d1e5SSatish Balay #undef __FUNC__
785615d1e5SSatish Balay #define __FUNC__ "MatGetArray_MPIDense"
798f6be9afSLois Curfman McInnes int MatGetArray_MPIDense(Mat A,Scalar **array)
80ff14e315SSatish Balay {
81ff14e315SSatish Balay   Mat_MPIDense *a = (Mat_MPIDense *) A->data;
82ff14e315SSatish Balay   int          ierr;
83ff14e315SSatish Balay 
843a40ed3dSBarry Smith   PetscFunctionBegin;
85ff14e315SSatish Balay   ierr = MatGetArray(a->A,array);CHKERRQ(ierr);
863a40ed3dSBarry Smith   PetscFunctionReturn(0);
87ff14e315SSatish Balay }
88ff14e315SSatish Balay 
895615d1e5SSatish Balay #undef __FUNC__
90ca3fa75bSLois Curfman McInnes #define __FUNC__ "MatGetSubMatrix_MPIDense"
91ca3fa75bSLois Curfman McInnes static int MatGetSubMatrix_MPIDense(Mat A,IS isrow,IS iscol,int cs,MatReuse scall,Mat *B)
92ca3fa75bSLois Curfman McInnes {
93ca3fa75bSLois Curfman McInnes   Mat_MPIDense *mat = (Mat_MPIDense *) A->data, *newmatd;
94ca3fa75bSLois Curfman McInnes   Mat_SeqDense *lmat = (Mat_SeqDense *) mat->A->data;
957eba5e9cSLois Curfman McInnes   int          i, j, ierr, *irow, *icol, n_lrows, n_lcols;
967eba5e9cSLois Curfman McInnes   int          rstart, rend, nrows, ncols, nlrows, nlcols, rank, ncols_all;
97ca3fa75bSLois Curfman McInnes   Scalar       *av, *bv, *v = lmat->v;
98ca3fa75bSLois Curfman McInnes   Mat          newmat;
99ca3fa75bSLois Curfman McInnes 
100ca3fa75bSLois Curfman McInnes   PetscFunctionBegin;
1017eba5e9cSLois Curfman McInnes   ierr = MPI_Comm_rank(A->comm,&rank);CHKERRQ(ierr);
102ca3fa75bSLois Curfman McInnes   ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr);
103ca3fa75bSLois Curfman McInnes   ierr = ISGetIndices(iscol,&icol);CHKERRQ(ierr);
104ca3fa75bSLois Curfman McInnes   ierr = ISGetSize(isrow,&nrows);CHKERRQ(ierr);
105ca3fa75bSLois Curfman McInnes   ierr = ISGetSize(iscol,&ncols);CHKERRQ(ierr);
106ca3fa75bSLois Curfman McInnes 
107ca3fa75bSLois Curfman McInnes   /* No parallel redistribution currently supported! Should really check each index set
1087eba5e9cSLois Curfman McInnes      to comfirm that it is OK.  ... Currently supports only submatrix same partitioning as
1097eba5e9cSLois Curfman McInnes      original matrix! */
110ca3fa75bSLois Curfman McInnes 
111ca3fa75bSLois Curfman McInnes   ierr = MatGetLocalSize(A,&nlrows,&nlcols);CHKERRQ(ierr);
1127eba5e9cSLois Curfman McInnes   ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr);
113ca3fa75bSLois Curfman McInnes 
114ca3fa75bSLois Curfman McInnes   /* Check submatrix call */
115ca3fa75bSLois Curfman McInnes   if (scall == MAT_REUSE_MATRIX) {
1167eba5e9cSLois Curfman McInnes     /* SETERRQ(PETSC_ERR_ARG_SIZ,0,"Reused submatrix wrong size"); */
1177eba5e9cSLois Curfman McInnes     /* Really need to test rows and column sizes! */
118ca3fa75bSLois Curfman McInnes     newmat = *B;
119ca3fa75bSLois Curfman McInnes   } else {
120ca3fa75bSLois Curfman McInnes     /* Create and fill new matrix */
121ca3fa75bSLois Curfman McInnes     ierr = MatCreateMPIDense(A->comm,nrows,ncols,PETSC_DECIDE,PETSC_DECIDE,PETSC_NULL,&newmat);CHKERRQ(ierr);
122ca3fa75bSLois Curfman McInnes   }
123ca3fa75bSLois Curfman McInnes 
124ca3fa75bSLois Curfman McInnes   /* Now extract the data pointers and do the copy, column at a time */
125ca3fa75bSLois Curfman McInnes   newmatd = (Mat_MPIDense *) newmat->data;
126ca3fa75bSLois Curfman McInnes   bv = ((Mat_SeqDense *)newmatd->A->data)->v;
127ca3fa75bSLois Curfman McInnes 
128ca3fa75bSLois Curfman McInnes   for ( i=0; i<ncols; i++ ) {
129ca3fa75bSLois Curfman McInnes     av = v + nlrows*icol[i];
130ca3fa75bSLois Curfman McInnes     for (j=0; j<nrows; j++ ) {
1317eba5e9cSLois Curfman McInnes       *bv++ = av[irow[j] - rstart];
132ca3fa75bSLois Curfman McInnes     }
133ca3fa75bSLois Curfman McInnes   }
134ca3fa75bSLois Curfman McInnes 
135ca3fa75bSLois Curfman McInnes   /* Assemble the matrices so that the correct flags are set */
136ca3fa75bSLois Curfman McInnes   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
137ca3fa75bSLois Curfman McInnes   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
138ca3fa75bSLois Curfman McInnes 
139ca3fa75bSLois Curfman McInnes   /* Free work space */
140ca3fa75bSLois Curfman McInnes   ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr);
141ca3fa75bSLois Curfman McInnes   ierr = ISRestoreIndices(iscol,&icol);CHKERRQ(ierr);
142ca3fa75bSLois Curfman McInnes   *B = newmat;
143ca3fa75bSLois Curfman McInnes   PetscFunctionReturn(0);
144ca3fa75bSLois Curfman McInnes }
145ca3fa75bSLois Curfman McInnes 
146ca3fa75bSLois Curfman McInnes #undef __FUNC__
1475615d1e5SSatish Balay #define __FUNC__ "MatRestoreArray_MPIDense"
1488f6be9afSLois Curfman McInnes int MatRestoreArray_MPIDense(Mat A,Scalar **array)
149ff14e315SSatish Balay {
1503a40ed3dSBarry Smith   PetscFunctionBegin;
1513a40ed3dSBarry Smith   PetscFunctionReturn(0);
152ff14e315SSatish Balay }
153ff14e315SSatish Balay 
1545615d1e5SSatish Balay #undef __FUNC__
1555615d1e5SSatish Balay #define __FUNC__ "MatAssemblyBegin_MPIDense"
1568f6be9afSLois Curfman McInnes int MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode)
1578965ea79SLois Curfman McInnes {
15839ddd567SLois Curfman McInnes   Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data;
1598965ea79SLois Curfman McInnes   MPI_Comm     comm = mat->comm;
160d36fbae8SSatish Balay   int          ierr,nstash,reallocs;
1618965ea79SLois Curfman McInnes   InsertMode   addv;
1628965ea79SLois Curfman McInnes 
1633a40ed3dSBarry Smith   PetscFunctionBegin;
1648965ea79SLois Curfman McInnes   /* make sure all processors are either in INSERTMODE or ADDMODE */
165ca161407SBarry Smith   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,comm);CHKERRQ(ierr);
1667056b6fcSBarry Smith   if (addv == (ADD_VALUES|INSERT_VALUES)) {
167a8c6a408SBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,0,"Cannot mix adds/inserts on different procs");
1688965ea79SLois Curfman McInnes   }
169e0fa3b82SLois Curfman McInnes   mat->insertmode = addv; /* in case this processor had no cache */
1708965ea79SLois Curfman McInnes 
1718798bf22SSatish Balay   ierr = MatStashScatterBegin_Private(&mat->stash,mdn->rowners);CHKERRQ(ierr);
1728798bf22SSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
173d36fbae8SSatish Balay   PLogInfo(mdn->A,"MatAssemblyBegin_MPIDense:Stash has %d entries, uses %d mallocs.\n",
174d36fbae8SSatish Balay            nstash,reallocs);
1753a40ed3dSBarry Smith   PetscFunctionReturn(0);
1768965ea79SLois Curfman McInnes }
1778965ea79SLois Curfman McInnes 
1785615d1e5SSatish Balay #undef __FUNC__
1795615d1e5SSatish Balay #define __FUNC__ "MatAssemblyEnd_MPIDense"
1808f6be9afSLois Curfman McInnes int MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode)
1818965ea79SLois Curfman McInnes {
18239ddd567SLois Curfman McInnes   Mat_MPIDense *mdn=(Mat_MPIDense*)mat->data;
1837ef1d9bdSSatish Balay   int          i,n,ierr,*row,*col,flg,j,rstart,ncols;
1847ef1d9bdSSatish Balay   Scalar       *val;
185e0fa3b82SLois Curfman McInnes   InsertMode   addv=mat->insertmode;
1868965ea79SLois Curfman McInnes 
1873a40ed3dSBarry Smith   PetscFunctionBegin;
1888965ea79SLois Curfman McInnes   /*  wait on receives */
1897ef1d9bdSSatish Balay   while (1) {
1908798bf22SSatish Balay     ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
1917ef1d9bdSSatish Balay     if (!flg) break;
1928965ea79SLois Curfman McInnes 
1937ef1d9bdSSatish Balay     for ( i=0; i<n; ) {
1947ef1d9bdSSatish Balay       /* Now identify the consecutive vals belonging to the same row */
1957ef1d9bdSSatish Balay       for ( j=i,rstart=row[j]; j<n; j++ ) { if (row[j] != rstart) break; }
1967ef1d9bdSSatish Balay       if (j < n) ncols = j-i;
1977ef1d9bdSSatish Balay       else       ncols = n-i;
1987ef1d9bdSSatish Balay       /* Now assemble all these values with a single function call */
1997ef1d9bdSSatish Balay       ierr = MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
2007ef1d9bdSSatish Balay       i = j;
2018965ea79SLois Curfman McInnes     }
2027ef1d9bdSSatish Balay   }
2038798bf22SSatish Balay   ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
2048965ea79SLois Curfman McInnes 
20539ddd567SLois Curfman McInnes   ierr = MatAssemblyBegin(mdn->A,mode);CHKERRQ(ierr);
20639ddd567SLois Curfman McInnes   ierr = MatAssemblyEnd(mdn->A,mode);CHKERRQ(ierr);
2078965ea79SLois Curfman McInnes 
2086d4a8577SBarry Smith   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
20939ddd567SLois Curfman McInnes     ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr);
2108965ea79SLois Curfman McInnes   }
2113a40ed3dSBarry Smith   PetscFunctionReturn(0);
2128965ea79SLois Curfman McInnes }
2138965ea79SLois Curfman McInnes 
2145615d1e5SSatish Balay #undef __FUNC__
2155615d1e5SSatish Balay #define __FUNC__ "MatZeroEntries_MPIDense"
2168f6be9afSLois Curfman McInnes int MatZeroEntries_MPIDense(Mat A)
2178965ea79SLois Curfman McInnes {
2183a40ed3dSBarry Smith   int          ierr;
21939ddd567SLois Curfman McInnes   Mat_MPIDense *l = (Mat_MPIDense *) A->data;
2203a40ed3dSBarry Smith 
2213a40ed3dSBarry Smith   PetscFunctionBegin;
2223a40ed3dSBarry Smith   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
2233a40ed3dSBarry Smith   PetscFunctionReturn(0);
2248965ea79SLois Curfman McInnes }
2258965ea79SLois Curfman McInnes 
2265615d1e5SSatish Balay #undef __FUNC__
2275615d1e5SSatish Balay #define __FUNC__ "MatGetBlockSize_MPIDense"
2288f6be9afSLois Curfman McInnes int MatGetBlockSize_MPIDense(Mat A,int *bs)
2294e220ebcSLois Curfman McInnes {
2303a40ed3dSBarry Smith   PetscFunctionBegin;
2314e220ebcSLois Curfman McInnes   *bs = 1;
2323a40ed3dSBarry Smith   PetscFunctionReturn(0);
2334e220ebcSLois Curfman McInnes }
2344e220ebcSLois Curfman McInnes 
2358965ea79SLois Curfman McInnes /* the code does not do the diagonal entries correctly unless the
2368965ea79SLois Curfman McInnes    matrix is square and the column and row owerships are identical.
2378965ea79SLois Curfman McInnes    This is a BUG. The only way to fix it seems to be to access
2383501a2bdSLois Curfman McInnes    mdn->A and mdn->B directly and not through the MatZeroRows()
2398965ea79SLois Curfman McInnes    routine.
2408965ea79SLois Curfman McInnes */
2415615d1e5SSatish Balay #undef __FUNC__
2425615d1e5SSatish Balay #define __FUNC__ "MatZeroRows_MPIDense"
2438f6be9afSLois Curfman McInnes int MatZeroRows_MPIDense(Mat A,IS is,Scalar *diag)
2448965ea79SLois Curfman McInnes {
24539ddd567SLois Curfman McInnes   Mat_MPIDense   *l = (Mat_MPIDense *) A->data;
2468965ea79SLois Curfman McInnes   int            i,ierr,N, *rows,*owners = l->rowners,size = l->size;
2478965ea79SLois Curfman McInnes   int            *procs,*nprocs,j,found,idx,nsends,*work;
2488965ea79SLois Curfman McInnes   int            nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank;
2498965ea79SLois Curfman McInnes   int            *rvalues,tag = A->tag,count,base,slen,n,*source;
2508965ea79SLois Curfman McInnes   int            *lens,imdex,*lrows,*values;
2518965ea79SLois Curfman McInnes   MPI_Comm       comm = A->comm;
2528965ea79SLois Curfman McInnes   MPI_Request    *send_waits,*recv_waits;
2538965ea79SLois Curfman McInnes   MPI_Status     recv_status,*send_status;
2548965ea79SLois Curfman McInnes   IS             istmp;
2558965ea79SLois Curfman McInnes 
2563a40ed3dSBarry Smith   PetscFunctionBegin;
25777c4ece6SBarry Smith   ierr = ISGetSize(is,&N);CHKERRQ(ierr);
2588965ea79SLois Curfman McInnes   ierr = ISGetIndices(is,&rows);CHKERRQ(ierr);
2598965ea79SLois Curfman McInnes 
2608965ea79SLois Curfman McInnes   /*  first count number of contributors to each processor */
2610452661fSBarry Smith   nprocs = (int *) PetscMalloc( 2*size*sizeof(int) );CHKPTRQ(nprocs);
262549d3d68SSatish Balay   ierr   = PetscMemzero(nprocs,2*size*sizeof(int));CHKERRQ(ierr);
263549d3d68SSatish Balay   procs  = nprocs + size;
2640452661fSBarry Smith   owner  = (int *) PetscMalloc((N+1)*sizeof(int));CHKPTRQ(owner); /* see note*/
2658965ea79SLois Curfman McInnes   for ( i=0; i<N; i++ ) {
2668965ea79SLois Curfman McInnes     idx = rows[i];
2678965ea79SLois Curfman McInnes     found = 0;
2688965ea79SLois Curfman McInnes     for ( j=0; j<size; j++ ) {
2698965ea79SLois Curfman McInnes       if (idx >= owners[j] && idx < owners[j+1]) {
2708965ea79SLois Curfman McInnes         nprocs[j]++; procs[j] = 1; owner[i] = j; found = 1; break;
2718965ea79SLois Curfman McInnes       }
2728965ea79SLois Curfman McInnes     }
273a8c6a408SBarry Smith     if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Index out of range");
2748965ea79SLois Curfman McInnes   }
2758965ea79SLois Curfman McInnes   nsends = 0;  for ( i=0; i<size; i++ ) { nsends += procs[i];}
2768965ea79SLois Curfman McInnes 
2778965ea79SLois Curfman McInnes   /* inform other processors of number of messages and max length*/
2780452661fSBarry Smith   work   = (int *) PetscMalloc( size*sizeof(int) );CHKPTRQ(work);
279ca161407SBarry Smith   ierr   = MPI_Allreduce( procs, work,size,MPI_INT,MPI_SUM,comm);CHKERRQ(ierr);
2808965ea79SLois Curfman McInnes   nrecvs = work[rank];
281ca161407SBarry Smith   ierr   = MPI_Allreduce( nprocs, work,size,MPI_INT,MPI_MAX,comm);CHKERRQ(ierr);
2828965ea79SLois Curfman McInnes   nmax   = work[rank];
283606d414cSSatish Balay   ierr = PetscFree(work);CHKERRQ(ierr);
2848965ea79SLois Curfman McInnes 
2858965ea79SLois Curfman McInnes   /* post receives:   */
2863a40ed3dSBarry Smith   rvalues    = (int *) PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(int));CHKPTRQ(rvalues);
2873a40ed3dSBarry Smith   recv_waits = (MPI_Request *) PetscMalloc((nrecvs+1)*sizeof(MPI_Request));CHKPTRQ(recv_waits);
2888965ea79SLois Curfman McInnes   for ( i=0; i<nrecvs; i++ ) {
289ca161407SBarry Smith     ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr);
2908965ea79SLois Curfman McInnes   }
2918965ea79SLois Curfman McInnes 
2928965ea79SLois Curfman McInnes   /* do sends:
2938965ea79SLois Curfman McInnes       1) starts[i] gives the starting index in svalues for stuff going to
2948965ea79SLois Curfman McInnes          the ith processor
2958965ea79SLois Curfman McInnes   */
2960452661fSBarry Smith   svalues    = (int *) PetscMalloc( (N+1)*sizeof(int) );CHKPTRQ(svalues);
2977056b6fcSBarry Smith   send_waits = (MPI_Request *) PetscMalloc((nsends+1)*sizeof(MPI_Request));CHKPTRQ(send_waits);
2980452661fSBarry Smith   starts     = (int *) PetscMalloc( (size+1)*sizeof(int) );CHKPTRQ(starts);
2998965ea79SLois Curfman McInnes   starts[0]  = 0;
3008965ea79SLois Curfman McInnes   for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];}
3018965ea79SLois Curfman McInnes   for ( i=0; i<N; i++ ) {
3028965ea79SLois Curfman McInnes     svalues[starts[owner[i]]++] = rows[i];
3038965ea79SLois Curfman McInnes   }
3048965ea79SLois Curfman McInnes   ISRestoreIndices(is,&rows);
3058965ea79SLois Curfman McInnes 
3068965ea79SLois Curfman McInnes   starts[0] = 0;
3078965ea79SLois Curfman McInnes   for ( i=1; i<size+1; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];}
3088965ea79SLois Curfman McInnes   count = 0;
3098965ea79SLois Curfman McInnes   for ( i=0; i<size; i++ ) {
3108965ea79SLois Curfman McInnes     if (procs[i]) {
311ca161407SBarry Smith       ierr = MPI_Isend(svalues+starts[i],nprocs[i],MPI_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr);
3128965ea79SLois Curfman McInnes     }
3138965ea79SLois Curfman McInnes   }
314606d414cSSatish Balay   ierr = PetscFree(starts);CHKERRQ(ierr);
3158965ea79SLois Curfman McInnes 
3168965ea79SLois Curfman McInnes   base = owners[rank];
3178965ea79SLois Curfman McInnes 
3188965ea79SLois Curfman McInnes   /*  wait on receives */
3190452661fSBarry Smith   lens   = (int *) PetscMalloc( 2*(nrecvs+1)*sizeof(int) );CHKPTRQ(lens);
3208965ea79SLois Curfman McInnes   source = lens + nrecvs;
3218965ea79SLois Curfman McInnes   count  = nrecvs; slen = 0;
3228965ea79SLois Curfman McInnes   while (count) {
323ca161407SBarry Smith     ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr);
3248965ea79SLois Curfman McInnes     /* unpack receives into our local space */
325ca161407SBarry Smith     ierr = MPI_Get_count(&recv_status,MPI_INT,&n);CHKERRQ(ierr);
3268965ea79SLois Curfman McInnes     source[imdex]  = recv_status.MPI_SOURCE;
3278965ea79SLois Curfman McInnes     lens[imdex]  = n;
3288965ea79SLois Curfman McInnes     slen += n;
3298965ea79SLois Curfman McInnes     count--;
3308965ea79SLois Curfman McInnes   }
331606d414cSSatish Balay   ierr = PetscFree(recv_waits);CHKERRQ(ierr);
3328965ea79SLois Curfman McInnes 
3338965ea79SLois Curfman McInnes   /* move the data into the send scatter */
3340452661fSBarry Smith   lrows = (int *) PetscMalloc( (slen+1)*sizeof(int) );CHKPTRQ(lrows);
3358965ea79SLois Curfman McInnes   count = 0;
3368965ea79SLois Curfman McInnes   for ( i=0; i<nrecvs; i++ ) {
3378965ea79SLois Curfman McInnes     values = rvalues + i*nmax;
3388965ea79SLois Curfman McInnes     for ( j=0; j<lens[i]; j++ ) {
3398965ea79SLois Curfman McInnes       lrows[count++] = values[j] - base;
3408965ea79SLois Curfman McInnes     }
3418965ea79SLois Curfman McInnes   }
342606d414cSSatish Balay   ierr = PetscFree(rvalues);CHKERRQ(ierr);
343606d414cSSatish Balay   ierr = PetscFree(lens);CHKERRQ(ierr);
344606d414cSSatish Balay   ierr = PetscFree(owner);CHKERRQ(ierr);
345606d414cSSatish Balay   ierr = PetscFree(nprocs);CHKERRQ(ierr);
3468965ea79SLois Curfman McInnes 
3478965ea79SLois Curfman McInnes   /* actually zap the local rows */
348029af93fSBarry Smith   ierr = ISCreateGeneral(PETSC_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr);
3498965ea79SLois Curfman McInnes   PLogObjectParent(A,istmp);
350606d414cSSatish Balay   ierr = PetscFree(lrows);CHKERRQ(ierr);
3518965ea79SLois Curfman McInnes   ierr = MatZeroRows(l->A,istmp,diag);CHKERRQ(ierr);
3528965ea79SLois Curfman McInnes   ierr = ISDestroy(istmp);CHKERRQ(ierr);
3538965ea79SLois Curfman McInnes 
3548965ea79SLois Curfman McInnes   /* wait on sends */
3558965ea79SLois Curfman McInnes   if (nsends) {
3567056b6fcSBarry Smith     send_status = (MPI_Status *) PetscMalloc(nsends*sizeof(MPI_Status));CHKPTRQ(send_status);
357ca161407SBarry Smith     ierr        = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr);
358606d414cSSatish Balay     ierr = PetscFree(send_status);CHKERRQ(ierr);
3598965ea79SLois Curfman McInnes   }
360606d414cSSatish Balay   ierr = PetscFree(send_waits);CHKERRQ(ierr);
361606d414cSSatish Balay   ierr = PetscFree(svalues);CHKERRQ(ierr);
3628965ea79SLois Curfman McInnes 
3633a40ed3dSBarry Smith   PetscFunctionReturn(0);
3648965ea79SLois Curfman McInnes }
3658965ea79SLois Curfman McInnes 
3665615d1e5SSatish Balay #undef __FUNC__
3675615d1e5SSatish Balay #define __FUNC__ "MatMult_MPIDense"
3688f6be9afSLois Curfman McInnes int MatMult_MPIDense(Mat mat,Vec xx,Vec yy)
3698965ea79SLois Curfman McInnes {
37039ddd567SLois Curfman McInnes   Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data;
3718965ea79SLois Curfman McInnes   int          ierr;
372c456f294SBarry Smith 
3733a40ed3dSBarry Smith   PetscFunctionBegin;
37443a90d84SBarry Smith   ierr = VecScatterBegin(xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD,mdn->Mvctx);CHKERRQ(ierr);
37543a90d84SBarry Smith   ierr = VecScatterEnd(xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD,mdn->Mvctx);CHKERRQ(ierr);
37644cd7ae7SLois Curfman McInnes   ierr = MatMult_SeqDense(mdn->A,mdn->lvec,yy);CHKERRQ(ierr);
3773a40ed3dSBarry Smith   PetscFunctionReturn(0);
3788965ea79SLois Curfman McInnes }
3798965ea79SLois Curfman McInnes 
3805615d1e5SSatish Balay #undef __FUNC__
3815615d1e5SSatish Balay #define __FUNC__ "MatMultAdd_MPIDense"
3828f6be9afSLois Curfman McInnes int MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz)
3838965ea79SLois Curfman McInnes {
38439ddd567SLois Curfman McInnes   Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data;
3858965ea79SLois Curfman McInnes   int          ierr;
386c456f294SBarry Smith 
3873a40ed3dSBarry Smith   PetscFunctionBegin;
38843a90d84SBarry Smith   ierr = VecScatterBegin(xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD,mdn->Mvctx);CHKERRQ(ierr);
38943a90d84SBarry Smith   ierr = VecScatterEnd(xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD,mdn->Mvctx);CHKERRQ(ierr);
39044cd7ae7SLois Curfman McInnes   ierr = MatMultAdd_SeqDense(mdn->A,mdn->lvec,yy,zz);CHKERRQ(ierr);
3913a40ed3dSBarry Smith   PetscFunctionReturn(0);
3928965ea79SLois Curfman McInnes }
3938965ea79SLois Curfman McInnes 
3945615d1e5SSatish Balay #undef __FUNC__
3955615d1e5SSatish Balay #define __FUNC__ "MatMultTrans_MPIDense"
3968f6be9afSLois Curfman McInnes int MatMultTrans_MPIDense(Mat A,Vec xx,Vec yy)
397096963f5SLois Curfman McInnes {
398096963f5SLois Curfman McInnes   Mat_MPIDense *a = (Mat_MPIDense *) A->data;
399096963f5SLois Curfman McInnes   int          ierr;
4003501a2bdSLois Curfman McInnes   Scalar       zero = 0.0;
401096963f5SLois Curfman McInnes 
4023a40ed3dSBarry Smith   PetscFunctionBegin;
4033501a2bdSLois Curfman McInnes   ierr = VecSet(&zero,yy);CHKERRQ(ierr);
40444cd7ae7SLois Curfman McInnes   ierr = MatMultTrans_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr);
405537820f0SBarry Smith   ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
406537820f0SBarry Smith   ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
4073a40ed3dSBarry Smith   PetscFunctionReturn(0);
408096963f5SLois Curfman McInnes }
409096963f5SLois Curfman McInnes 
4105615d1e5SSatish Balay #undef __FUNC__
4115615d1e5SSatish Balay #define __FUNC__ "MatMultTransAdd_MPIDense"
4128f6be9afSLois Curfman McInnes int MatMultTransAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz)
413096963f5SLois Curfman McInnes {
414096963f5SLois Curfman McInnes   Mat_MPIDense *a = (Mat_MPIDense *) A->data;
415096963f5SLois Curfman McInnes   int          ierr;
416096963f5SLois Curfman McInnes 
4173a40ed3dSBarry Smith   PetscFunctionBegin;
4183501a2bdSLois Curfman McInnes   ierr = VecCopy(yy,zz);CHKERRQ(ierr);
41944cd7ae7SLois Curfman McInnes   ierr = MatMultTrans_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr);
420537820f0SBarry Smith   ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
421537820f0SBarry Smith   ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
4223a40ed3dSBarry Smith   PetscFunctionReturn(0);
423096963f5SLois Curfman McInnes }
424096963f5SLois Curfman McInnes 
4255615d1e5SSatish Balay #undef __FUNC__
4265615d1e5SSatish Balay #define __FUNC__ "MatGetDiagonal_MPIDense"
4278f6be9afSLois Curfman McInnes int MatGetDiagonal_MPIDense(Mat A,Vec v)
4288965ea79SLois Curfman McInnes {
42939ddd567SLois Curfman McInnes   Mat_MPIDense *a = (Mat_MPIDense *) A->data;
430096963f5SLois Curfman McInnes   Mat_SeqDense *aloc = (Mat_SeqDense *) a->A->data;
43144cd7ae7SLois Curfman McInnes   int          ierr, len, i, n, m = a->m, radd;
43244cd7ae7SLois Curfman McInnes   Scalar       *x, zero = 0.0;
433ed3cc1f0SBarry Smith 
4343a40ed3dSBarry Smith   PetscFunctionBegin;
43544cd7ae7SLois Curfman McInnes   VecSet(&zero,v);
436096963f5SLois Curfman McInnes   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
437096963f5SLois Curfman McInnes   ierr = VecGetSize(v,&n);CHKERRQ(ierr);
438a8c6a408SBarry Smith   if (n != a->M) SETERRQ(PETSC_ERR_ARG_SIZ,0,"Nonconforming mat and vec");
43944cd7ae7SLois Curfman McInnes   len = PetscMin(aloc->m,aloc->n);
4407ddc982cSLois Curfman McInnes   radd = a->rstart*m;
44144cd7ae7SLois Curfman McInnes   for ( i=0; i<len; i++ ) {
442096963f5SLois Curfman McInnes     x[i] = aloc->v[radd + i*m + i];
443096963f5SLois Curfman McInnes   }
4449a8c540fSSatish Balay   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
4453a40ed3dSBarry Smith   PetscFunctionReturn(0);
4468965ea79SLois Curfman McInnes }
4478965ea79SLois Curfman McInnes 
4485615d1e5SSatish Balay #undef __FUNC__
4495615d1e5SSatish Balay #define __FUNC__ "MatDestroy_MPIDense"
450e1311b90SBarry Smith int MatDestroy_MPIDense(Mat mat)
4518965ea79SLois Curfman McInnes {
4523501a2bdSLois Curfman McInnes   Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data;
4538965ea79SLois Curfman McInnes   int          ierr;
454ed3cc1f0SBarry Smith 
4553a40ed3dSBarry Smith   PetscFunctionBegin;
45694d884c6SBarry Smith 
45794d884c6SBarry Smith   if (mat->mapping) {
45894d884c6SBarry Smith     ierr = ISLocalToGlobalMappingDestroy(mat->mapping);CHKERRQ(ierr);
45994d884c6SBarry Smith   }
46094d884c6SBarry Smith   if (mat->bmapping) {
46194d884c6SBarry Smith     ierr = ISLocalToGlobalMappingDestroy(mat->bmapping);CHKERRQ(ierr);
46294d884c6SBarry Smith   }
463aa482453SBarry Smith #if defined(PETSC_USE_LOG)
464e1311b90SBarry Smith   PLogObjectState((PetscObject)mat,"Rows=%d, Cols=%d",mdn->M,mdn->N);
4658965ea79SLois Curfman McInnes #endif
4668798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
467606d414cSSatish Balay   ierr = PetscFree(mdn->rowners);CHKERRQ(ierr);
4683501a2bdSLois Curfman McInnes   ierr = MatDestroy(mdn->A);CHKERRQ(ierr);
4693501a2bdSLois Curfman McInnes   if (mdn->lvec)   VecDestroy(mdn->lvec);
4703501a2bdSLois Curfman McInnes   if (mdn->Mvctx)  VecScatterDestroy(mdn->Mvctx);
471622d7880SLois Curfman McInnes   if (mdn->factor) {
472606d414cSSatish Balay     if (mdn->factor->temp)   {ierr = PetscFree(mdn->factor->temp);CHKERRQ(ierr);}
473606d414cSSatish Balay     if (mdn->factor->tag)    {ierr = PetscFree(mdn->factor->tag);CHKERRQ(ierr);}
474606d414cSSatish Balay     if (mdn->factor->pivots) {ierr = PetscFree(mdn->factor->pivots);CHKERRQ(ierr);}
475606d414cSSatish Balay     ierr = PetscFree(mdn->factor);CHKERRQ(ierr);
476622d7880SLois Curfman McInnes   }
477606d414cSSatish Balay   ierr = PetscFree(mdn);CHKERRQ(ierr);
47861b13de0SBarry Smith   if (mat->rmap) {
47961b13de0SBarry Smith     ierr = MapDestroy(mat->rmap);CHKERRQ(ierr);
48061b13de0SBarry Smith   }
48161b13de0SBarry Smith   if (mat->cmap) {
48261b13de0SBarry Smith     ierr = MapDestroy(mat->cmap);CHKERRQ(ierr);
48390f02eecSBarry Smith   }
4848965ea79SLois Curfman McInnes   PLogObjectDestroy(mat);
4850452661fSBarry Smith   PetscHeaderDestroy(mat);
4863a40ed3dSBarry Smith   PetscFunctionReturn(0);
4878965ea79SLois Curfman McInnes }
48839ddd567SLois Curfman McInnes 
4895615d1e5SSatish Balay #undef __FUNC__
4905615d1e5SSatish Balay #define __FUNC__ "MatView_MPIDense_Binary"
49139ddd567SLois Curfman McInnes static int MatView_MPIDense_Binary(Mat mat,Viewer viewer)
4928965ea79SLois Curfman McInnes {
49339ddd567SLois Curfman McInnes   Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data;
4948965ea79SLois Curfman McInnes   int          ierr;
4957056b6fcSBarry Smith 
4963a40ed3dSBarry Smith   PetscFunctionBegin;
49739ddd567SLois Curfman McInnes   if (mdn->size == 1) {
49839ddd567SLois Curfman McInnes     ierr = MatView(mdn->A,viewer);CHKERRQ(ierr);
4998965ea79SLois Curfman McInnes   }
500a8c6a408SBarry Smith   else SETERRQ(PETSC_ERR_SUP,0,"Only uniprocessor output supported");
5013a40ed3dSBarry Smith   PetscFunctionReturn(0);
5028965ea79SLois Curfman McInnes }
5038965ea79SLois Curfman McInnes 
5045615d1e5SSatish Balay #undef __FUNC__
5055615d1e5SSatish Balay #define __FUNC__ "MatView_MPIDense_ASCII"
50639ddd567SLois Curfman McInnes static int MatView_MPIDense_ASCII(Mat mat,Viewer viewer)
5078965ea79SLois Curfman McInnes {
50839ddd567SLois Curfman McInnes   Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data;
50977ed5343SBarry Smith   int          ierr, format, size = mdn->size, rank = mdn->rank;
5108965ea79SLois Curfman McInnes   FILE         *fd;
51119bcc07fSBarry Smith   ViewerType   vtype;
5128965ea79SLois Curfman McInnes 
5133a40ed3dSBarry Smith   PetscFunctionBegin;
5143a40ed3dSBarry Smith   ierr = ViewerGetType(viewer,&vtype);CHKERRQ(ierr);
51590ace30eSBarry Smith   ierr = ViewerASCIIGetPointer(viewer,&fd);CHKERRQ(ierr);
516888f2ed8SSatish Balay   ierr = ViewerGetFormat(viewer,&format);CHKERRQ(ierr);
517639f9d9dSBarry Smith   if (format == VIEWER_FORMAT_ASCII_INFO_LONG) {
5184e220ebcSLois Curfman McInnes     MatInfo info;
519888f2ed8SSatish Balay     ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
52077c4ece6SBarry Smith     PetscSequentialPhaseBegin(mat->comm,1);
5214e220ebcSLois Curfman McInnes       fprintf(fd,"  [%d] local rows %d nz %d nz alloced %d mem %d \n",rank,mdn->m,
5224e220ebcSLois Curfman McInnes          (int)info.nz_used,(int)info.nz_allocated,(int)info.memory);
523096963f5SLois Curfman McInnes       fflush(fd);
52477c4ece6SBarry Smith     PetscSequentialPhaseEnd(mat->comm,1);
5253501a2bdSLois Curfman McInnes     ierr = VecScatterView(mdn->Mvctx,viewer);CHKERRQ(ierr);
5263a40ed3dSBarry Smith     PetscFunctionReturn(0);
52796f6c058SBarry Smith   } else if (format == VIEWER_FORMAT_ASCII_INFO) {
5283a40ed3dSBarry Smith     PetscFunctionReturn(0);
5298965ea79SLois Curfman McInnes   }
53077ed5343SBarry Smith 
5318965ea79SLois Curfman McInnes   if (size == 1) {
53239ddd567SLois Curfman McInnes     ierr = MatView(mdn->A,viewer);CHKERRQ(ierr);
5333a40ed3dSBarry Smith   } else {
5348965ea79SLois Curfman McInnes     /* assemble the entire matrix onto first processor. */
5358965ea79SLois Curfman McInnes     Mat          A;
53639ddd567SLois Curfman McInnes     int          M = mdn->M, N = mdn->N,m,row,i, nz, *cols;
53739ddd567SLois Curfman McInnes     Scalar       *vals;
53839ddd567SLois Curfman McInnes     Mat_SeqDense *Amdn = (Mat_SeqDense*) mdn->A->data;
5398965ea79SLois Curfman McInnes 
5408965ea79SLois Curfman McInnes     if (!rank) {
5410513a670SBarry Smith       ierr = MatCreateMPIDense(mat->comm,M,N,M,N,PETSC_NULL,&A);CHKERRQ(ierr);
5423a40ed3dSBarry Smith     } else {
5430513a670SBarry Smith       ierr = MatCreateMPIDense(mat->comm,0,N,M,N,PETSC_NULL,&A);CHKERRQ(ierr);
5448965ea79SLois Curfman McInnes     }
5458965ea79SLois Curfman McInnes     PLogObjectParent(mat,A);
5468965ea79SLois Curfman McInnes 
54739ddd567SLois Curfman McInnes     /* Copy the matrix ... This isn't the most efficient means,
54839ddd567SLois Curfman McInnes        but it's quick for now */
54939ddd567SLois Curfman McInnes     row = mdn->rstart; m = Amdn->m;
5508965ea79SLois Curfman McInnes     for ( i=0; i<m; i++ ) {
55139ddd567SLois Curfman McInnes       ierr = MatGetRow(mat,row,&nz,&cols,&vals);CHKERRQ(ierr);
55239ddd567SLois Curfman McInnes       ierr = MatSetValues(A,1,&row,nz,cols,vals,INSERT_VALUES);CHKERRQ(ierr);
55339ddd567SLois Curfman McInnes       ierr = MatRestoreRow(mat,row,&nz,&cols,&vals);CHKERRQ(ierr);
55439ddd567SLois Curfman McInnes       row++;
5558965ea79SLois Curfman McInnes     }
5568965ea79SLois Curfman McInnes 
5576d4a8577SBarry Smith     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
5586d4a8577SBarry Smith     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
5598965ea79SLois Curfman McInnes     if (!rank) {
56039ddd567SLois Curfman McInnes       ierr = MatView(((Mat_MPIDense*)(A->data))->A,viewer);CHKERRQ(ierr);
5618965ea79SLois Curfman McInnes     }
5628965ea79SLois Curfman McInnes     ierr = MatDestroy(A);CHKERRQ(ierr);
5638965ea79SLois Curfman McInnes   }
5643a40ed3dSBarry Smith   PetscFunctionReturn(0);
5658965ea79SLois Curfman McInnes }
5668965ea79SLois Curfman McInnes 
5675615d1e5SSatish Balay #undef __FUNC__
5685615d1e5SSatish Balay #define __FUNC__ "MatView_MPIDense"
569e1311b90SBarry Smith int MatView_MPIDense(Mat mat,Viewer viewer)
5708965ea79SLois Curfman McInnes {
57139ddd567SLois Curfman McInnes   int          ierr;
572bcd2baecSBarry Smith   ViewerType   vtype;
5738965ea79SLois Curfman McInnes 
574bcd2baecSBarry Smith   ierr = ViewerGetType(viewer,&vtype);CHKERRQ(ierr);
5753f1db9ecSBarry Smith   if (PetscTypeCompare(vtype,ASCII_VIEWER)) {
57639ddd567SLois Curfman McInnes     ierr = MatView_MPIDense_ASCII(mat,viewer);CHKERRQ(ierr);
5773f1db9ecSBarry Smith   } else if (PetscTypeCompare(vtype,BINARY_VIEWER)) {
5783a40ed3dSBarry Smith     ierr = MatView_MPIDense_Binary(mat,viewer);CHKERRQ(ierr);
5795cd90555SBarry Smith   } else {
5805cd90555SBarry Smith     SETERRQ(1,1,"Viewer type not supported by PETSc object");
5818965ea79SLois Curfman McInnes   }
5823a40ed3dSBarry Smith   PetscFunctionReturn(0);
5838965ea79SLois Curfman McInnes }
5848965ea79SLois Curfman McInnes 
5855615d1e5SSatish Balay #undef __FUNC__
5865615d1e5SSatish Balay #define __FUNC__ "MatGetInfo_MPIDense"
5878f6be9afSLois Curfman McInnes int MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info)
5888965ea79SLois Curfman McInnes {
5893501a2bdSLois Curfman McInnes   Mat_MPIDense *mat = (Mat_MPIDense *) A->data;
5903501a2bdSLois Curfman McInnes   Mat          mdn = mat->A;
5914e220ebcSLois Curfman McInnes   int          ierr;
5924e220ebcSLois Curfman McInnes   double       isend[5], irecv[5];
5938965ea79SLois Curfman McInnes 
5943a40ed3dSBarry Smith   PetscFunctionBegin;
5954e220ebcSLois Curfman McInnes   info->rows_global    = (double)mat->M;
5964e220ebcSLois Curfman McInnes   info->columns_global = (double)mat->N;
5974e220ebcSLois Curfman McInnes   info->rows_local     = (double)mat->m;
5984e220ebcSLois Curfman McInnes   info->columns_local  = (double)mat->N;
5994e220ebcSLois Curfman McInnes   info->block_size     = 1.0;
6004e220ebcSLois Curfman McInnes   ierr = MatGetInfo(mdn,MAT_LOCAL,info);CHKERRQ(ierr);
6014e220ebcSLois Curfman McInnes   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
6024e220ebcSLois Curfman McInnes   isend[3] = info->memory;  isend[4] = info->mallocs;
6038965ea79SLois Curfman McInnes   if (flag == MAT_LOCAL) {
6044e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
6054e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
6064e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
6074e220ebcSLois Curfman McInnes     info->memory       = isend[3];
6084e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
6098965ea79SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_MAX) {
610f7cdd7c9SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPI_DOUBLE,MPI_MAX,A->comm);CHKERRQ(ierr);
6114e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
6124e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
6134e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
6144e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
6154e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
6168965ea79SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_SUM) {
617f7cdd7c9SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPI_DOUBLE,MPI_SUM,A->comm);CHKERRQ(ierr);
6184e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
6194e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
6204e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
6214e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
6224e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
6238965ea79SLois Curfman McInnes   }
6244e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
6254e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
6264e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
6273a40ed3dSBarry Smith   PetscFunctionReturn(0);
6288965ea79SLois Curfman McInnes }
6298965ea79SLois Curfman McInnes 
6308c469469SLois Curfman McInnes /* extern int MatLUFactorSymbolic_MPIDense(Mat,IS,IS,double,Mat*);
6318aaee692SLois Curfman McInnes    extern int MatLUFactorNumeric_MPIDense(Mat,Mat*);
6328aaee692SLois Curfman McInnes    extern int MatLUFactor_MPIDense(Mat,IS,IS,double);
6338aaee692SLois Curfman McInnes    extern int MatSolve_MPIDense(Mat,Vec,Vec);
6348c469469SLois Curfman McInnes    extern int MatSolveAdd_MPIDense(Mat,Vec,Vec,Vec);
6358aaee692SLois Curfman McInnes    extern int MatSolveTrans_MPIDense(Mat,Vec,Vec);
6368aaee692SLois Curfman McInnes    extern int MatSolveTransAdd_MPIDense(Mat,Vec,Vec,Vec); */
6378aaee692SLois Curfman McInnes 
6385615d1e5SSatish Balay #undef __FUNC__
6395615d1e5SSatish Balay #define __FUNC__ "MatSetOption_MPIDense"
6408f6be9afSLois Curfman McInnes int MatSetOption_MPIDense(Mat A,MatOption op)
6418965ea79SLois Curfman McInnes {
64239ddd567SLois Curfman McInnes   Mat_MPIDense *a = (Mat_MPIDense *) A->data;
6438965ea79SLois Curfman McInnes 
6443a40ed3dSBarry Smith   PetscFunctionBegin;
6456d4a8577SBarry Smith   if (op == MAT_NO_NEW_NONZERO_LOCATIONS ||
6466d4a8577SBarry Smith       op == MAT_YES_NEW_NONZERO_LOCATIONS ||
6474787f768SSatish Balay       op == MAT_NEW_NONZERO_LOCATION_ERR ||
6484787f768SSatish Balay       op == MAT_NEW_NONZERO_ALLOCATION_ERR ||
649219d9a1aSLois Curfman McInnes       op == MAT_COLUMNS_SORTED ||
650219d9a1aSLois Curfman McInnes       op == MAT_COLUMNS_UNSORTED) {
651b1fbbac0SLois Curfman McInnes         MatSetOption(a->A,op);
652b1fbbac0SLois Curfman McInnes   } else if (op == MAT_ROW_ORIENTED) {
653aeafbbfcSLois Curfman McInnes         a->roworiented = 1;
6548965ea79SLois Curfman McInnes         MatSetOption(a->A,op);
655b1fbbac0SLois Curfman McInnes   } else if (op == MAT_ROWS_SORTED ||
656219d9a1aSLois Curfman McInnes              op == MAT_ROWS_UNSORTED ||
6576d4a8577SBarry Smith              op == MAT_SYMMETRIC ||
6586d4a8577SBarry Smith              op == MAT_STRUCTURALLY_SYMMETRIC ||
659b51ba29fSSatish Balay              op == MAT_YES_NEW_DIAGONALS ||
660b51ba29fSSatish Balay              op == MAT_USE_HASH_TABLE) {
661981c4779SBarry Smith     PLogInfo(A,"MatSetOption_MPIDense:Option ignored\n");
6623a40ed3dSBarry Smith   } else if (op == MAT_COLUMN_ORIENTED) {
6633a40ed3dSBarry Smith     a->roworiented = 0; MatSetOption(a->A,op);
6643782ba37SSatish Balay   } else if (op == MAT_IGNORE_OFF_PROC_ENTRIES) {
6653782ba37SSatish Balay     a->donotstash = 1;
6663a40ed3dSBarry Smith   } else if (op == MAT_NO_NEW_DIAGONALS) {
6673a40ed3dSBarry Smith     SETERRQ(PETSC_ERR_SUP,0,"MAT_NO_NEW_DIAGONALS");
6683a40ed3dSBarry Smith   } else {
6693a40ed3dSBarry Smith     SETERRQ(PETSC_ERR_SUP,0,"unknown option");
6703a40ed3dSBarry Smith   }
6713a40ed3dSBarry Smith   PetscFunctionReturn(0);
6728965ea79SLois Curfman McInnes }
6738965ea79SLois Curfman McInnes 
6745615d1e5SSatish Balay #undef __FUNC__
6755615d1e5SSatish Balay #define __FUNC__ "MatGetSize_MPIDense"
6768f6be9afSLois Curfman McInnes int MatGetSize_MPIDense(Mat A,int *m,int *n)
6778965ea79SLois Curfman McInnes {
6783501a2bdSLois Curfman McInnes   Mat_MPIDense *mat = (Mat_MPIDense *) A->data;
6793a40ed3dSBarry Smith 
6803a40ed3dSBarry Smith   PetscFunctionBegin;
6818965ea79SLois Curfman McInnes   *m = mat->M; *n = mat->N;
6823a40ed3dSBarry Smith   PetscFunctionReturn(0);
6838965ea79SLois Curfman McInnes }
6848965ea79SLois Curfman McInnes 
6855615d1e5SSatish Balay #undef __FUNC__
6865615d1e5SSatish Balay #define __FUNC__ "MatGetLocalSize_MPIDense"
6878f6be9afSLois Curfman McInnes int MatGetLocalSize_MPIDense(Mat A,int *m,int *n)
6888965ea79SLois Curfman McInnes {
6893501a2bdSLois Curfman McInnes   Mat_MPIDense *mat = (Mat_MPIDense *) A->data;
6903a40ed3dSBarry Smith 
6913a40ed3dSBarry Smith   PetscFunctionBegin;
6928965ea79SLois Curfman McInnes   *m = mat->m; *n = mat->N;
6933a40ed3dSBarry Smith   PetscFunctionReturn(0);
6948965ea79SLois Curfman McInnes }
6958965ea79SLois Curfman McInnes 
6965615d1e5SSatish Balay #undef __FUNC__
6975615d1e5SSatish Balay #define __FUNC__ "MatGetOwnershipRange_MPIDense"
6988f6be9afSLois Curfman McInnes int MatGetOwnershipRange_MPIDense(Mat A,int *m,int *n)
6998965ea79SLois Curfman McInnes {
7003501a2bdSLois Curfman McInnes   Mat_MPIDense *mat = (Mat_MPIDense *) A->data;
7013a40ed3dSBarry Smith 
7023a40ed3dSBarry Smith   PetscFunctionBegin;
7038965ea79SLois Curfman McInnes   *m = mat->rstart; *n = mat->rend;
7043a40ed3dSBarry Smith   PetscFunctionReturn(0);
7058965ea79SLois Curfman McInnes }
7068965ea79SLois Curfman McInnes 
7075615d1e5SSatish Balay #undef __FUNC__
7085615d1e5SSatish Balay #define __FUNC__ "MatGetRow_MPIDense"
7098f6be9afSLois Curfman McInnes int MatGetRow_MPIDense(Mat A,int row,int *nz,int **idx,Scalar **v)
7108965ea79SLois Curfman McInnes {
7113501a2bdSLois Curfman McInnes   Mat_MPIDense *mat = (Mat_MPIDense *) A->data;
7123a40ed3dSBarry Smith   int          lrow, rstart = mat->rstart, rend = mat->rend,ierr;
7138965ea79SLois Curfman McInnes 
7143a40ed3dSBarry Smith   PetscFunctionBegin;
715a8c6a408SBarry Smith   if (row < rstart || row >= rend) SETERRQ(PETSC_ERR_SUP,0,"only local rows")
7168965ea79SLois Curfman McInnes   lrow = row - rstart;
7173a40ed3dSBarry Smith   ierr = MatGetRow(mat->A,lrow,nz,idx,v);CHKERRQ(ierr);
7183a40ed3dSBarry Smith   PetscFunctionReturn(0);
7198965ea79SLois Curfman McInnes }
7208965ea79SLois Curfman McInnes 
7215615d1e5SSatish Balay #undef __FUNC__
7225615d1e5SSatish Balay #define __FUNC__ "MatRestoreRow_MPIDense"
7238f6be9afSLois Curfman McInnes int MatRestoreRow_MPIDense(Mat mat,int row,int *nz,int **idx,Scalar **v)
7248965ea79SLois Curfman McInnes {
725606d414cSSatish Balay   int ierr;
726606d414cSSatish Balay 
7273a40ed3dSBarry Smith   PetscFunctionBegin;
728606d414cSSatish Balay   if (idx) {ierr = PetscFree(*idx);CHKERRQ(ierr);}
729606d414cSSatish Balay   if (v) {ierr = PetscFree(*v);CHKERRQ(ierr);}
7303a40ed3dSBarry Smith   PetscFunctionReturn(0);
7318965ea79SLois Curfman McInnes }
7328965ea79SLois Curfman McInnes 
7335615d1e5SSatish Balay #undef __FUNC__
734*5b2fa520SLois Curfman McInnes #define __FUNC__ "MatDiagonalScale_MPIDense"
735*5b2fa520SLois Curfman McInnes int MatDiagonalScale_MPIDense(Mat A,Vec ll,Vec rr)
736*5b2fa520SLois Curfman McInnes {
737*5b2fa520SLois Curfman McInnes   Mat_MPIDense *mdn = (Mat_MPIDense *) A->data;
738*5b2fa520SLois Curfman McInnes   Mat_SeqDense *mat = (Mat_SeqDense*) mdn->A->data;
739*5b2fa520SLois Curfman McInnes   Scalar       *l,*r,x,*v;
740*5b2fa520SLois Curfman McInnes   int          ierr,i,j,m = mat->m, n = mat->n;
741*5b2fa520SLois Curfman McInnes 
742*5b2fa520SLois Curfman McInnes   PetscFunctionBegin;
743*5b2fa520SLois Curfman McInnes   if (ll) {
744*5b2fa520SLois Curfman McInnes     ierr = VecGetSize(ll,&m);CHKERRQ(ierr);
745*5b2fa520SLois Curfman McInnes     ierr = VecGetArray(ll,&l);CHKERRQ(ierr);
746*5b2fa520SLois Curfman McInnes     if (m != mat->m) SETERRQ(PETSC_ERR_ARG_SIZ,0,"Left scaling vec wrong size");
747*5b2fa520SLois Curfman McInnes     for ( i=0; i<m; i++ ) {
748*5b2fa520SLois Curfman McInnes       x = l[i];
749*5b2fa520SLois Curfman McInnes       v = mat->v + i;
750*5b2fa520SLois Curfman McInnes       for ( j=0; j<n; j++ ) { (*v) *= x; v+= m;}
751*5b2fa520SLois Curfman McInnes     }
752*5b2fa520SLois Curfman McInnes     ierr = VecRestoreArray(ll,&l);CHKERRQ(ierr);
753*5b2fa520SLois Curfman McInnes     PLogFlops(n*m);
754*5b2fa520SLois Curfman McInnes   }
755*5b2fa520SLois Curfman McInnes   if (rr) {
756*5b2fa520SLois Curfman McInnes     ierr = VecGetSize(rr,&n);CHKERRQ(ierr);
757*5b2fa520SLois Curfman McInnes     if (n != mat->n) SETERRQ(PETSC_ERR_ARG_SIZ,0,"Right scaling vec wrong size");
758*5b2fa520SLois Curfman McInnes     ierr = VecScatterBegin(rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD,mdn->Mvctx);CHKERRQ(ierr);
759*5b2fa520SLois Curfman McInnes     ierr = VecScatterEnd(rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD,mdn->Mvctx);CHKERRQ(ierr);
760*5b2fa520SLois Curfman McInnes     ierr = VecGetArray(mdn->lvec,&r);CHKERRQ(ierr);
761*5b2fa520SLois Curfman McInnes     for ( i=0; i<n; i++ ) {
762*5b2fa520SLois Curfman McInnes       x = r[i];
763*5b2fa520SLois Curfman McInnes       v = mat->v + i*m;
764*5b2fa520SLois Curfman McInnes       for ( j=0; j<m; j++ ) { (*v++) *= x;}
765*5b2fa520SLois Curfman McInnes     }
766*5b2fa520SLois Curfman McInnes     ierr = VecRestoreArray(rr,&r);CHKERRQ(ierr);
767*5b2fa520SLois Curfman McInnes     PLogFlops(n*m);
768*5b2fa520SLois Curfman McInnes   }
769*5b2fa520SLois Curfman McInnes   PetscFunctionReturn(0);
770*5b2fa520SLois Curfman McInnes }
771*5b2fa520SLois Curfman McInnes 
772*5b2fa520SLois Curfman McInnes #undef __FUNC__
7735615d1e5SSatish Balay #define __FUNC__ "MatNorm_MPIDense"
7748f6be9afSLois Curfman McInnes int MatNorm_MPIDense(Mat A,NormType type,double *norm)
775096963f5SLois Curfman McInnes {
7763501a2bdSLois Curfman McInnes   Mat_MPIDense *mdn = (Mat_MPIDense *) A->data;
7773501a2bdSLois Curfman McInnes   Mat_SeqDense *mat = (Mat_SeqDense*) mdn->A->data;
7783501a2bdSLois Curfman McInnes   int          ierr, i, j;
7793501a2bdSLois Curfman McInnes   double       sum = 0.0;
7803501a2bdSLois Curfman McInnes   Scalar       *v = mat->v;
7813501a2bdSLois Curfman McInnes 
7823a40ed3dSBarry Smith   PetscFunctionBegin;
7833501a2bdSLois Curfman McInnes   if (mdn->size == 1) {
7843501a2bdSLois Curfman McInnes     ierr =  MatNorm(mdn->A,type,norm);CHKERRQ(ierr);
7853501a2bdSLois Curfman McInnes   } else {
7863501a2bdSLois Curfman McInnes     if (type == NORM_FROBENIUS) {
7873501a2bdSLois Curfman McInnes       for (i=0; i<mat->n*mat->m; i++ ) {
788aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
789e20fef11SSatish Balay         sum += PetscReal(PetscConj(*v)*(*v)); v++;
7903501a2bdSLois Curfman McInnes #else
7913501a2bdSLois Curfman McInnes         sum += (*v)*(*v); v++;
7923501a2bdSLois Curfman McInnes #endif
7933501a2bdSLois Curfman McInnes       }
794ca161407SBarry Smith       ierr = MPI_Allreduce(&sum,norm,1,MPI_DOUBLE,MPI_SUM,A->comm);CHKERRQ(ierr);
7953501a2bdSLois Curfman McInnes       *norm = sqrt(*norm);
7963501a2bdSLois Curfman McInnes       PLogFlops(2*mat->n*mat->m);
7973a40ed3dSBarry Smith     } else if (type == NORM_1) {
7983501a2bdSLois Curfman McInnes       double *tmp, *tmp2;
7990452661fSBarry Smith       tmp  = (double *) PetscMalloc( 2*mdn->N*sizeof(double) );CHKPTRQ(tmp);
8003501a2bdSLois Curfman McInnes       tmp2 = tmp + mdn->N;
801549d3d68SSatish Balay       ierr = PetscMemzero(tmp,2*mdn->N*sizeof(double));CHKERRQ(ierr);
802096963f5SLois Curfman McInnes       *norm = 0.0;
8033501a2bdSLois Curfman McInnes       v = mat->v;
8043501a2bdSLois Curfman McInnes       for ( j=0; j<mat->n; j++ ) {
8053501a2bdSLois Curfman McInnes         for ( i=0; i<mat->m; i++ ) {
80667e560aaSBarry Smith           tmp[j] += PetscAbsScalar(*v);  v++;
8073501a2bdSLois Curfman McInnes         }
8083501a2bdSLois Curfman McInnes       }
809ca161407SBarry Smith       ierr = MPI_Allreduce(tmp,tmp2,mdn->N,MPI_DOUBLE,MPI_SUM,A->comm);CHKERRQ(ierr);
8103501a2bdSLois Curfman McInnes       for ( j=0; j<mdn->N; j++ ) {
8113501a2bdSLois Curfman McInnes         if (tmp2[j] > *norm) *norm = tmp2[j];
8123501a2bdSLois Curfman McInnes       }
813606d414cSSatish Balay       ierr = PetscFree(tmp);CHKERRQ(ierr);
8143501a2bdSLois Curfman McInnes       PLogFlops(mat->n*mat->m);
8153a40ed3dSBarry Smith     } else if (type == NORM_INFINITY) { /* max row norm */
8163501a2bdSLois Curfman McInnes       double ntemp;
8173501a2bdSLois Curfman McInnes       ierr = MatNorm(mdn->A,type,&ntemp);CHKERRQ(ierr);
818ca161407SBarry Smith       ierr = MPI_Allreduce(&ntemp,norm,1,MPI_DOUBLE,MPI_MAX,A->comm);CHKERRQ(ierr);
8193a40ed3dSBarry Smith     } else {
820a8c6a408SBarry Smith       SETERRQ(PETSC_ERR_SUP,0,"No support for two norm");
8213501a2bdSLois Curfman McInnes     }
8223501a2bdSLois Curfman McInnes   }
8233a40ed3dSBarry Smith   PetscFunctionReturn(0);
8243501a2bdSLois Curfman McInnes }
8253501a2bdSLois Curfman McInnes 
8265615d1e5SSatish Balay #undef __FUNC__
8275615d1e5SSatish Balay #define __FUNC__ "MatTranspose_MPIDense"
8288f6be9afSLois Curfman McInnes int MatTranspose_MPIDense(Mat A,Mat *matout)
8293501a2bdSLois Curfman McInnes {
8303501a2bdSLois Curfman McInnes   Mat_MPIDense *a = (Mat_MPIDense *) A->data;
8313501a2bdSLois Curfman McInnes   Mat_SeqDense *Aloc = (Mat_SeqDense *) a->A->data;
8323501a2bdSLois Curfman McInnes   Mat          B;
8333501a2bdSLois Curfman McInnes   int          M = a->M, N = a->N, m, n, *rwork, rstart = a->rstart;
8343501a2bdSLois Curfman McInnes   int          j, i, ierr;
8353501a2bdSLois Curfman McInnes   Scalar       *v;
8363501a2bdSLois Curfman McInnes 
8373a40ed3dSBarry Smith   PetscFunctionBegin;
8387056b6fcSBarry Smith   if (matout == PETSC_NULL && M != N) {
839a8c6a408SBarry Smith     SETERRQ(PETSC_ERR_SUP,0,"Supports square matrix only in-place");
8407056b6fcSBarry Smith   }
8417056b6fcSBarry Smith   ierr = MatCreateMPIDense(A->comm,PETSC_DECIDE,PETSC_DECIDE,N,M,PETSC_NULL,&B);CHKERRQ(ierr);
8423501a2bdSLois Curfman McInnes 
8433501a2bdSLois Curfman McInnes   m = Aloc->m; n = Aloc->n; v = Aloc->v;
8440452661fSBarry Smith   rwork = (int *) PetscMalloc(n*sizeof(int));CHKPTRQ(rwork);
8453501a2bdSLois Curfman McInnes   for ( j=0; j<n; j++ ) {
8463501a2bdSLois Curfman McInnes     for (i=0; i<m; i++) rwork[i] = rstart + i;
8473501a2bdSLois Curfman McInnes     ierr = MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES);CHKERRQ(ierr);
8483501a2bdSLois Curfman McInnes     v   += m;
8493501a2bdSLois Curfman McInnes   }
850606d414cSSatish Balay   ierr = PetscFree(rwork);CHKERRQ(ierr);
8516d4a8577SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
8526d4a8577SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
8533638b69dSLois Curfman McInnes   if (matout != PETSC_NULL) {
8543501a2bdSLois Curfman McInnes     *matout = B;
8553501a2bdSLois Curfman McInnes   } else {
856f830108cSBarry Smith     PetscOps *Abops;
85709dc0095SBarry Smith     MatOps   Aops;
858f830108cSBarry Smith 
8593501a2bdSLois Curfman McInnes     /* This isn't really an in-place transpose, but free data struct from a */
860606d414cSSatish Balay     ierr = PetscFree(a->rowners);CHKERRQ(ierr);
8613501a2bdSLois Curfman McInnes     ierr = MatDestroy(a->A);CHKERRQ(ierr);
8623501a2bdSLois Curfman McInnes     if (a->lvec) VecDestroy(a->lvec);
8633501a2bdSLois Curfman McInnes     if (a->Mvctx) VecScatterDestroy(a->Mvctx);
864606d414cSSatish Balay     ierr = PetscFree(a);CHKERRQ(ierr);
865f830108cSBarry Smith 
866f830108cSBarry Smith     /*
867f830108cSBarry Smith          This is horrible, horrible code. We need to keep the
868f830108cSBarry Smith       A pointers for the bops and ops but copy everything
869f830108cSBarry Smith       else from C.
870f830108cSBarry Smith     */
871f830108cSBarry Smith     Abops   = A->bops;
872f830108cSBarry Smith     Aops    = A->ops;
873549d3d68SSatish Balay     ierr    = PetscMemcpy(A,B,sizeof(struct _p_Mat));CHKERRQ(ierr);
874f830108cSBarry Smith     A->bops = Abops;
875f830108cSBarry Smith     A->ops  = Aops;
876f830108cSBarry Smith 
8770452661fSBarry Smith     PetscHeaderDestroy(B);
8783501a2bdSLois Curfman McInnes   }
8793a40ed3dSBarry Smith   PetscFunctionReturn(0);
880096963f5SLois Curfman McInnes }
881096963f5SLois Curfman McInnes 
882eadb2fb4SBarry Smith #include "pinclude/blaslapack.h"
8835615d1e5SSatish Balay #undef __FUNC__
8845615d1e5SSatish Balay #define __FUNC__ "MatScale_MPIDense"
8858f6be9afSLois Curfman McInnes int MatScale_MPIDense(Scalar *alpha,Mat inA)
88644cd7ae7SLois Curfman McInnes {
88744cd7ae7SLois Curfman McInnes   Mat_MPIDense *A = (Mat_MPIDense *) inA->data;
88844cd7ae7SLois Curfman McInnes   Mat_SeqDense *a = (Mat_SeqDense *) A->A->data;
88944cd7ae7SLois Curfman McInnes   int          one = 1, nz;
89044cd7ae7SLois Curfman McInnes 
8913a40ed3dSBarry Smith   PetscFunctionBegin;
89244cd7ae7SLois Curfman McInnes   nz = a->m*a->n;
89344cd7ae7SLois Curfman McInnes   BLscal_( &nz, alpha, a->v, &one );
89444cd7ae7SLois Curfman McInnes   PLogFlops(nz);
8953a40ed3dSBarry Smith   PetscFunctionReturn(0);
89644cd7ae7SLois Curfman McInnes }
89744cd7ae7SLois Curfman McInnes 
8985609ef8eSBarry Smith static int MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat *);
8997b2a1423SBarry Smith extern int MatGetSubMatrices_MPIDense(Mat,int,IS *,IS *,MatReuse,Mat **);
9008965ea79SLois Curfman McInnes 
9018965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/
90209dc0095SBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIDense,
90309dc0095SBarry Smith        MatGetRow_MPIDense,
90409dc0095SBarry Smith        MatRestoreRow_MPIDense,
90509dc0095SBarry Smith        MatMult_MPIDense,
90609dc0095SBarry Smith        MatMultAdd_MPIDense,
90709dc0095SBarry Smith        MatMultTrans_MPIDense,
90809dc0095SBarry Smith        MatMultTransAdd_MPIDense,
9098965ea79SLois Curfman McInnes        0,
91009dc0095SBarry Smith        0,
91109dc0095SBarry Smith        0,
91209dc0095SBarry Smith        0,
91309dc0095SBarry Smith        0,
91409dc0095SBarry Smith        0,
91509dc0095SBarry Smith        0,
91609dc0095SBarry Smith        MatTranspose_MPIDense,
91709dc0095SBarry Smith        MatGetInfo_MPIDense,0,
91809dc0095SBarry Smith        MatGetDiagonal_MPIDense,
919*5b2fa520SLois Curfman McInnes        MatDiagonalScale_MPIDense,
92009dc0095SBarry Smith        MatNorm_MPIDense,
92109dc0095SBarry Smith        MatAssemblyBegin_MPIDense,
92209dc0095SBarry Smith        MatAssemblyEnd_MPIDense,
92309dc0095SBarry Smith        0,
92409dc0095SBarry Smith        MatSetOption_MPIDense,
92509dc0095SBarry Smith        MatZeroEntries_MPIDense,
92609dc0095SBarry Smith        MatZeroRows_MPIDense,
92709dc0095SBarry Smith        0,
92809dc0095SBarry Smith        0,
92909dc0095SBarry Smith        0,
93009dc0095SBarry Smith        0,
93109dc0095SBarry Smith        MatGetSize_MPIDense,
93209dc0095SBarry Smith        MatGetLocalSize_MPIDense,
93339ddd567SLois Curfman McInnes        MatGetOwnershipRange_MPIDense,
93409dc0095SBarry Smith        0,
93509dc0095SBarry Smith        0,
93609dc0095SBarry Smith        MatGetArray_MPIDense,
93709dc0095SBarry Smith        MatRestoreArray_MPIDense,
9385609ef8eSBarry Smith        MatDuplicate_MPIDense,
93909dc0095SBarry Smith        0,
94009dc0095SBarry Smith        0,
94109dc0095SBarry Smith        0,
94209dc0095SBarry Smith        0,
94309dc0095SBarry Smith        0,
9442ce60cd0SSatish Balay        MatGetSubMatrices_MPIDense,
94509dc0095SBarry Smith        0,
94609dc0095SBarry Smith        MatGetValues_MPIDense,
94709dc0095SBarry Smith        0,
94809dc0095SBarry Smith        0,
94909dc0095SBarry Smith        MatScale_MPIDense,
95009dc0095SBarry Smith        0,
95109dc0095SBarry Smith        0,
95209dc0095SBarry Smith        0,
95309dc0095SBarry Smith        MatGetBlockSize_MPIDense,
95409dc0095SBarry Smith        0,
95509dc0095SBarry Smith        0,
95609dc0095SBarry Smith        0,
95709dc0095SBarry Smith        0,
95809dc0095SBarry Smith        0,
95909dc0095SBarry Smith        0,
96009dc0095SBarry Smith        0,
96109dc0095SBarry Smith        0,
96209dc0095SBarry Smith        0,
963ca3fa75bSLois Curfman McInnes        MatGetSubMatrix_MPIDense,
96409dc0095SBarry Smith        0,
96509dc0095SBarry Smith        0,
96609dc0095SBarry Smith        MatGetMaps_Petsc};
9678965ea79SLois Curfman McInnes 
9685615d1e5SSatish Balay #undef __FUNC__
9695615d1e5SSatish Balay #define __FUNC__ "MatCreateMPIDense"
9708965ea79SLois Curfman McInnes /*@C
97139ddd567SLois Curfman McInnes    MatCreateMPIDense - Creates a sparse parallel matrix in dense format.
9728965ea79SLois Curfman McInnes 
973db81eaa0SLois Curfman McInnes    Collective on MPI_Comm
974db81eaa0SLois Curfman McInnes 
9758965ea79SLois Curfman McInnes    Input Parameters:
976db81eaa0SLois Curfman McInnes +  comm - MPI communicator
9778965ea79SLois Curfman McInnes .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
978db81eaa0SLois Curfman McInnes .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
9798965ea79SLois Curfman McInnes .  M - number of global rows (or PETSC_DECIDE to have calculated if m is given)
980db81eaa0SLois Curfman McInnes .  N - number of global columns (or PETSC_DECIDE to have calculated if n is given)
981db81eaa0SLois Curfman McInnes -  data - optional location of matrix data.  Set data=PETSC_NULL for PETSc
982dfc5480cSLois Curfman McInnes    to control all matrix memory allocation.
9838965ea79SLois Curfman McInnes 
9848965ea79SLois Curfman McInnes    Output Parameter:
985477f1c0bSLois Curfman McInnes .  A - the matrix
9868965ea79SLois Curfman McInnes 
987b259b22eSLois Curfman McInnes    Notes:
98839ddd567SLois Curfman McInnes    The dense format is fully compatible with standard Fortran 77
98939ddd567SLois Curfman McInnes    storage by columns.
9908965ea79SLois Curfman McInnes 
99118f449edSLois Curfman McInnes    The data input variable is intended primarily for Fortran programmers
99218f449edSLois Curfman McInnes    who wish to allocate their own matrix memory space.  Most users should
993b4fd4287SBarry Smith    set data=PETSC_NULL.
99418f449edSLois Curfman McInnes 
9958965ea79SLois Curfman McInnes    The user MUST specify either the local or global matrix dimensions
9968965ea79SLois Curfman McInnes    (possibly both).
9978965ea79SLois Curfman McInnes 
9983501a2bdSLois Curfman McInnes    Currently, the only parallel dense matrix decomposition is by rows,
9993501a2bdSLois Curfman McInnes    so that n=N and each submatrix owns all of the global columns.
10003501a2bdSLois Curfman McInnes 
1001027ccd11SLois Curfman McInnes    Level: intermediate
1002027ccd11SLois Curfman McInnes 
100339ddd567SLois Curfman McInnes .keywords: matrix, dense, parallel
10048965ea79SLois Curfman McInnes 
100539ddd567SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues()
10068965ea79SLois Curfman McInnes @*/
1007477f1c0bSLois Curfman McInnes int MatCreateMPIDense(MPI_Comm comm,int m,int n,int M,int N,Scalar *data,Mat *A)
10088965ea79SLois Curfman McInnes {
10098965ea79SLois Curfman McInnes   Mat          mat;
101039ddd567SLois Curfman McInnes   Mat_MPIDense *a;
101125cdf11fSBarry Smith   int          ierr, i,flg;
10128965ea79SLois Curfman McInnes 
10133a40ed3dSBarry Smith   PetscFunctionBegin;
1014ed2daf61SLois Curfman McInnes   /* Note:  For now, when data is specified above, this assumes the user correctly
1015ed2daf61SLois Curfman McInnes    allocates the local dense storage space.  We should add error checking. */
101618f449edSLois Curfman McInnes 
1017477f1c0bSLois Curfman McInnes   *A = 0;
10183f1db9ecSBarry Smith   PetscHeaderCreate(mat,_p_Mat,struct _MatOps,MAT_COOKIE,MATMPIDENSE,"Mat",comm,MatDestroy,MatView);
10198965ea79SLois Curfman McInnes   PLogObjectCreate(mat);
10200452661fSBarry Smith   mat->data         = (void *) (a = PetscNew(Mat_MPIDense));CHKPTRQ(a);
1021549d3d68SSatish Balay   ierr              = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1022e1311b90SBarry Smith   mat->ops->destroy = MatDestroy_MPIDense;
1023e1311b90SBarry Smith   mat->ops->view    = MatView_MPIDense;
10248965ea79SLois Curfman McInnes   mat->factor       = 0;
102590f02eecSBarry Smith   mat->mapping      = 0;
10268965ea79SLois Curfman McInnes 
1027622d7880SLois Curfman McInnes   a->factor       = 0;
1028e0fa3b82SLois Curfman McInnes   mat->insertmode = NOT_SET_VALUES;
1029d132466eSBarry Smith   ierr = MPI_Comm_rank(comm,&a->rank);CHKERRQ(ierr);
1030d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&a->size);CHKERRQ(ierr);
10318965ea79SLois Curfman McInnes 
103296f6c058SBarry Smith   ierr = PetscSplitOwnership(comm,&m,&M);CHKERRQ(ierr);
103339ddd567SLois Curfman McInnes 
1034c7fcc2eaSBarry Smith   /*
1035c7fcc2eaSBarry Smith      The computation of n is wrong below, n should represent the number of local
1036c7fcc2eaSBarry Smith      rows in the right (column vector)
1037c7fcc2eaSBarry Smith   */
1038c7fcc2eaSBarry Smith 
103939ddd567SLois Curfman McInnes   /* each row stores all columns */
104039ddd567SLois Curfman McInnes   if (N == PETSC_DECIDE) N = n;
1041d7e8b826SBarry Smith   if (n == PETSC_DECIDE) {n = N/a->size + ((N % a->size) > a->rank);}
1042a8c6a408SBarry Smith   /*  if (n != N) SETERRQ(PETSC_ERR_SUP,0,"For now, only n=N is supported"); */
1043aca0ad90SLois Curfman McInnes   a->N = mat->N = N;
1044aca0ad90SLois Curfman McInnes   a->M = mat->M = M;
1045aca0ad90SLois Curfman McInnes   a->m = mat->m = m;
1046aca0ad90SLois Curfman McInnes   a->n = mat->n = n;
10478965ea79SLois Curfman McInnes 
1048c7fcc2eaSBarry Smith   /* the information in the maps duplicates the information computed below, eventually
1049c7fcc2eaSBarry Smith      we should remove the duplicate information that is not contained in the maps */
1050488ecbafSBarry Smith   ierr = MapCreateMPI(comm,m,M,&mat->rmap);CHKERRQ(ierr);
105196f6c058SBarry Smith   ierr = MapCreateMPI(comm,PETSC_DECIDE,N,&mat->cmap);CHKERRQ(ierr);
1052c7fcc2eaSBarry Smith 
10538965ea79SLois Curfman McInnes   /* build local table of row and column ownerships */
1054d7e8b826SBarry Smith   a->rowners = (int *) PetscMalloc(2*(a->size+2)*sizeof(int));CHKPTRQ(a->rowners);
1055d7e8b826SBarry Smith   a->cowners = a->rowners + a->size + 1;
1056f09e8eb9SSatish Balay   PLogObjectMemory(mat,2*(a->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPIDense));
1057ca161407SBarry Smith   ierr = MPI_Allgather(&m,1,MPI_INT,a->rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
10588965ea79SLois Curfman McInnes   a->rowners[0] = 0;
10598965ea79SLois Curfman McInnes   for ( i=2; i<=a->size; i++ ) {
10608965ea79SLois Curfman McInnes     a->rowners[i] += a->rowners[i-1];
10618965ea79SLois Curfman McInnes   }
10628965ea79SLois Curfman McInnes   a->rstart = a->rowners[a->rank];
10638965ea79SLois Curfman McInnes   a->rend   = a->rowners[a->rank+1];
1064ca161407SBarry Smith   ierr      = MPI_Allgather(&n,1,MPI_INT,a->cowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
1065d7e8b826SBarry Smith   a->cowners[0] = 0;
1066d7e8b826SBarry Smith   for ( i=2; i<=a->size; i++ ) {
1067d7e8b826SBarry Smith     a->cowners[i] += a->cowners[i-1];
1068d7e8b826SBarry Smith   }
10698965ea79SLois Curfman McInnes 
1070029af93fSBarry Smith   ierr = MatCreateSeqDense(PETSC_COMM_SELF,m,N,data,&a->A);CHKERRQ(ierr);
10718965ea79SLois Curfman McInnes   PLogObjectParent(mat,a->A);
10728965ea79SLois Curfman McInnes 
10738965ea79SLois Curfman McInnes   /* build cache for off array entries formed */
10743782ba37SSatish Balay   a->donotstash = 0;
10758798bf22SSatish Balay   ierr = MatStashCreate_Private(comm,1,&mat->stash);CHKERRQ(ierr);
10768965ea79SLois Curfman McInnes 
10778965ea79SLois Curfman McInnes   /* stuff used for matrix vector multiply */
10788965ea79SLois Curfman McInnes   a->lvec        = 0;
10798965ea79SLois Curfman McInnes   a->Mvctx       = 0;
108039b7565bSBarry Smith   a->roworiented = 1;
10818965ea79SLois Curfman McInnes 
1082477f1c0bSLois Curfman McInnes   *A = mat;
108325cdf11fSBarry Smith   ierr = OptionsHasName(PETSC_NULL,"-help",&flg);CHKERRQ(ierr);
108425cdf11fSBarry Smith   if (flg) {
10858c469469SLois Curfman McInnes     ierr = MatPrintHelp(mat);CHKERRQ(ierr);
10868c469469SLois Curfman McInnes   }
10873a40ed3dSBarry Smith   PetscFunctionReturn(0);
10888965ea79SLois Curfman McInnes }
10898965ea79SLois Curfman McInnes 
10905615d1e5SSatish Balay #undef __FUNC__
10915609ef8eSBarry Smith #define __FUNC__ "MatDuplicate_MPIDense"
10925609ef8eSBarry Smith static int MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat)
10938965ea79SLois Curfman McInnes {
10948965ea79SLois Curfman McInnes   Mat          mat;
10953501a2bdSLois Curfman McInnes   Mat_MPIDense *a,*oldmat = (Mat_MPIDense *) A->data;
109639ddd567SLois Curfman McInnes   int          ierr;
10972ba99913SLois Curfman McInnes   FactorCtx    *factor;
10988965ea79SLois Curfman McInnes 
10993a40ed3dSBarry Smith   PetscFunctionBegin;
11008965ea79SLois Curfman McInnes   *newmat       = 0;
11013f1db9ecSBarry Smith   PetscHeaderCreate(mat,_p_Mat,struct _MatOps,MAT_COOKIE,MATMPIDENSE,"Mat",A->comm,MatDestroy,MatView);
11028965ea79SLois Curfman McInnes   PLogObjectCreate(mat);
11030452661fSBarry Smith   mat->data         = (void *) (a = PetscNew(Mat_MPIDense));CHKPTRQ(a);
1104549d3d68SSatish Balay   ierr              = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1105e1311b90SBarry Smith   mat->ops->destroy = MatDestroy_MPIDense;
1106e1311b90SBarry Smith   mat->ops->view    = MatView_MPIDense;
11073501a2bdSLois Curfman McInnes   mat->factor       = A->factor;
1108c456f294SBarry Smith   mat->assembled    = PETSC_TRUE;
11098965ea79SLois Curfman McInnes 
111044cd7ae7SLois Curfman McInnes   a->m = mat->m = oldmat->m;
111144cd7ae7SLois Curfman McInnes   a->n = mat->n = oldmat->n;
111244cd7ae7SLois Curfman McInnes   a->M = mat->M = oldmat->M;
111344cd7ae7SLois Curfman McInnes   a->N = mat->N = oldmat->N;
11142ba99913SLois Curfman McInnes   if (oldmat->factor) {
11152ba99913SLois Curfman McInnes     a->factor = (FactorCtx *) (factor = PetscNew(FactorCtx));CHKPTRQ(factor);
11162ba99913SLois Curfman McInnes     /* copy factor contents ... add this code! */
11172ba99913SLois Curfman McInnes   } else a->factor = 0;
11188965ea79SLois Curfman McInnes 
11198965ea79SLois Curfman McInnes   a->rstart       = oldmat->rstart;
11208965ea79SLois Curfman McInnes   a->rend         = oldmat->rend;
11218965ea79SLois Curfman McInnes   a->size         = oldmat->size;
11228965ea79SLois Curfman McInnes   a->rank         = oldmat->rank;
1123e0fa3b82SLois Curfman McInnes   mat->insertmode = NOT_SET_VALUES;
11243782ba37SSatish Balay   a->donotstash   = oldmat->donotstash;
11250452661fSBarry Smith   a->rowners = (int *) PetscMalloc((a->size+1)*sizeof(int));CHKPTRQ(a->rowners);
1126f09e8eb9SSatish Balay   PLogObjectMemory(mat,(a->size+1)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPIDense));
1127549d3d68SSatish Balay   ierr = PetscMemcpy(a->rowners,oldmat->rowners,(a->size+1)*sizeof(int));CHKERRQ(ierr);
11288798bf22SSatish Balay   ierr = MatStashCreate_Private(A->comm,1,&mat->stash);CHKERRQ(ierr);
11298965ea79SLois Curfman McInnes 
11308965ea79SLois Curfman McInnes   ierr =  VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
11318965ea79SLois Curfman McInnes   PLogObjectParent(mat,a->lvec);
113255659b69SBarry Smith   ierr =  VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
11338965ea79SLois Curfman McInnes   PLogObjectParent(mat,a->Mvctx);
11345609ef8eSBarry Smith   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
11358965ea79SLois Curfman McInnes   PLogObjectParent(mat,a->A);
11368965ea79SLois Curfman McInnes   *newmat = mat;
11373a40ed3dSBarry Smith   PetscFunctionReturn(0);
11388965ea79SLois Curfman McInnes }
11398965ea79SLois Curfman McInnes 
114077c4ece6SBarry Smith #include "sys.h"
11418965ea79SLois Curfman McInnes 
11425615d1e5SSatish Balay #undef __FUNC__
11435615d1e5SSatish Balay #define __FUNC__ "MatLoad_MPIDense_DenseInFile"
114490ace30eSBarry Smith int MatLoad_MPIDense_DenseInFile(MPI_Comm comm,int fd,int M, int N, Mat *newmat)
114590ace30eSBarry Smith {
114640011551SBarry Smith   int        *rowners, i,size,rank,m,ierr,nz,j;
114790ace30eSBarry Smith   Scalar     *array,*vals,*vals_ptr;
114890ace30eSBarry Smith   MPI_Status status;
114990ace30eSBarry Smith 
11503a40ed3dSBarry Smith   PetscFunctionBegin;
1151d132466eSBarry Smith   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
1152d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
115390ace30eSBarry Smith 
115490ace30eSBarry Smith   /* determine ownership of all rows */
115590ace30eSBarry Smith   m          = M/size + ((M % size) > rank);
115690ace30eSBarry Smith   rowners    = (int *) PetscMalloc((size+2)*sizeof(int));CHKPTRQ(rowners);
1157ca161407SBarry Smith   ierr       = MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
115890ace30eSBarry Smith   rowners[0] = 0;
115990ace30eSBarry Smith   for ( i=2; i<=size; i++ ) {
116090ace30eSBarry Smith     rowners[i] += rowners[i-1];
116190ace30eSBarry Smith   }
116290ace30eSBarry Smith 
116390ace30eSBarry Smith   ierr = MatCreateMPIDense(comm,m,PETSC_DECIDE,M,N,PETSC_NULL,newmat);CHKERRQ(ierr);
116490ace30eSBarry Smith   ierr = MatGetArray(*newmat,&array);CHKERRQ(ierr);
116590ace30eSBarry Smith 
116690ace30eSBarry Smith   if (!rank) {
116790ace30eSBarry Smith     vals = (Scalar *) PetscMalloc( m*N*sizeof(Scalar) );CHKPTRQ(vals);
116890ace30eSBarry Smith 
116990ace30eSBarry Smith     /* read in my part of the matrix numerical values  */
11700752156aSBarry Smith     ierr = PetscBinaryRead(fd,vals,m*N,PETSC_SCALAR);CHKERRQ(ierr);
117190ace30eSBarry Smith 
117290ace30eSBarry Smith     /* insert into matrix-by row (this is why cannot directly read into array */
117390ace30eSBarry Smith     vals_ptr = vals;
117490ace30eSBarry Smith     for ( i=0; i<m; i++ ) {
117590ace30eSBarry Smith       for ( j=0; j<N; j++ ) {
117690ace30eSBarry Smith         array[i + j*m] = *vals_ptr++;
117790ace30eSBarry Smith       }
117890ace30eSBarry Smith     }
117990ace30eSBarry Smith 
118090ace30eSBarry Smith     /* read in other processors and ship out */
118190ace30eSBarry Smith     for ( i=1; i<size; i++ ) {
118290ace30eSBarry Smith       nz   = (rowners[i+1] - rowners[i])*N;
11830752156aSBarry Smith       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
1184ca161407SBarry Smith       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,(*newmat)->tag,comm);CHKERRQ(ierr);
118590ace30eSBarry Smith     }
11863a40ed3dSBarry Smith   } else {
118790ace30eSBarry Smith     /* receive numeric values */
118890ace30eSBarry Smith     vals = (Scalar*) PetscMalloc( m*N*sizeof(Scalar) );CHKPTRQ(vals);
118990ace30eSBarry Smith 
119090ace30eSBarry Smith     /* receive message of values*/
1191ca161407SBarry Smith     ierr = MPI_Recv(vals,m*N,MPIU_SCALAR,0,(*newmat)->tag,comm,&status);CHKERRQ(ierr);
119290ace30eSBarry Smith 
119390ace30eSBarry Smith     /* insert into matrix-by row (this is why cannot directly read into array */
119490ace30eSBarry Smith     vals_ptr = vals;
119590ace30eSBarry Smith     for ( i=0; i<m; i++ ) {
119690ace30eSBarry Smith       for ( j=0; j<N; j++ ) {
119790ace30eSBarry Smith         array[i + j*m] = *vals_ptr++;
119890ace30eSBarry Smith       }
119990ace30eSBarry Smith     }
120090ace30eSBarry Smith   }
1201606d414cSSatish Balay   ierr = PetscFree(rowners);CHKERRQ(ierr);
1202606d414cSSatish Balay   ierr = PetscFree(vals);CHKERRQ(ierr);
12036d4a8577SBarry Smith   ierr = MatAssemblyBegin(*newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
12046d4a8577SBarry Smith   ierr = MatAssemblyEnd(*newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
12053a40ed3dSBarry Smith   PetscFunctionReturn(0);
120690ace30eSBarry Smith }
120790ace30eSBarry Smith 
120890ace30eSBarry Smith 
12095615d1e5SSatish Balay #undef __FUNC__
12105615d1e5SSatish Balay #define __FUNC__ "MatLoad_MPIDense"
121119bcc07fSBarry Smith int MatLoad_MPIDense(Viewer viewer,MatType type,Mat *newmat)
12128965ea79SLois Curfman McInnes {
12138965ea79SLois Curfman McInnes   Mat          A;
12148965ea79SLois Curfman McInnes   Scalar       *vals,*svals;
121519bcc07fSBarry Smith   MPI_Comm     comm = ((PetscObject)viewer)->comm;
12168965ea79SLois Curfman McInnes   MPI_Status   status;
12178965ea79SLois Curfman McInnes   int          header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,maxnz,*cols;
12188965ea79SLois Curfman McInnes   int          *ourlens,*sndcounts = 0,*procsnz = 0, *offlens,jj,*mycols,*smycols;
121919bcc07fSBarry Smith   int          tag = ((PetscObject)viewer)->tag;
12203a40ed3dSBarry Smith   int          i, nz, ierr, j,rstart, rend, fd;
12218965ea79SLois Curfman McInnes 
12223a40ed3dSBarry Smith   PetscFunctionBegin;
1223d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
1224d132466eSBarry Smith   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
12258965ea79SLois Curfman McInnes   if (!rank) {
122690ace30eSBarry Smith     ierr = ViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
12270752156aSBarry Smith     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
1228a8c6a408SBarry Smith     if (header[0] != MAT_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"not matrix object");
12298965ea79SLois Curfman McInnes   }
12308965ea79SLois Curfman McInnes 
1231ca161407SBarry Smith   ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr);
123290ace30eSBarry Smith   M = header[1]; N = header[2]; nz = header[3];
123390ace30eSBarry Smith 
123490ace30eSBarry Smith   /*
123590ace30eSBarry Smith        Handle case where matrix is stored on disk as a dense matrix
123690ace30eSBarry Smith   */
123790ace30eSBarry Smith   if (nz == MATRIX_BINARY_FORMAT_DENSE) {
12383a40ed3dSBarry Smith     ierr = MatLoad_MPIDense_DenseInFile(comm,fd,M,N,newmat);CHKERRQ(ierr);
12393a40ed3dSBarry Smith     PetscFunctionReturn(0);
124090ace30eSBarry Smith   }
124190ace30eSBarry Smith 
12428965ea79SLois Curfman McInnes   /* determine ownership of all rows */
12438965ea79SLois Curfman McInnes   m          = M/size + ((M % size) > rank);
12440452661fSBarry Smith   rowners    = (int *) PetscMalloc((size+2)*sizeof(int));CHKPTRQ(rowners);
1245ca161407SBarry Smith   ierr       = MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
12468965ea79SLois Curfman McInnes   rowners[0] = 0;
12478965ea79SLois Curfman McInnes   for ( i=2; i<=size; i++ ) {
12488965ea79SLois Curfman McInnes     rowners[i] += rowners[i-1];
12498965ea79SLois Curfman McInnes   }
12508965ea79SLois Curfman McInnes   rstart = rowners[rank];
12518965ea79SLois Curfman McInnes   rend   = rowners[rank+1];
12528965ea79SLois Curfman McInnes 
12538965ea79SLois Curfman McInnes   /* distribute row lengths to all processors */
12540452661fSBarry Smith   ourlens = (int*) PetscMalloc( 2*(rend-rstart)*sizeof(int) );CHKPTRQ(ourlens);
12558965ea79SLois Curfman McInnes   offlens = ourlens + (rend-rstart);
12568965ea79SLois Curfman McInnes   if (!rank) {
12570452661fSBarry Smith     rowlengths = (int*) PetscMalloc( M*sizeof(int) );CHKPTRQ(rowlengths);
12580752156aSBarry Smith     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
12590452661fSBarry Smith     sndcounts = (int*) PetscMalloc( size*sizeof(int) );CHKPTRQ(sndcounts);
12608965ea79SLois Curfman McInnes     for ( i=0; i<size; i++ ) sndcounts[i] = rowners[i+1] - rowners[i];
1261ca161407SBarry Smith     ierr = MPI_Scatterv(rowlengths,sndcounts,rowners,MPI_INT,ourlens,rend-rstart,MPI_INT,0,comm);CHKERRQ(ierr);
1262606d414cSSatish Balay     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
1263ca161407SBarry Smith   } else {
1264ca161407SBarry Smith     ierr = MPI_Scatterv(0,0,0,MPI_INT,ourlens,rend-rstart,MPI_INT, 0,comm);CHKERRQ(ierr);
12658965ea79SLois Curfman McInnes   }
12668965ea79SLois Curfman McInnes 
12678965ea79SLois Curfman McInnes   if (!rank) {
12688965ea79SLois Curfman McInnes     /* calculate the number of nonzeros on each processor */
12690452661fSBarry Smith     procsnz = (int*) PetscMalloc( size*sizeof(int) );CHKPTRQ(procsnz);
1270549d3d68SSatish Balay     ierr    = PetscMemzero(procsnz,size*sizeof(int));CHKERRQ(ierr);
12718965ea79SLois Curfman McInnes     for ( i=0; i<size; i++ ) {
12728965ea79SLois Curfman McInnes       for ( j=rowners[i]; j< rowners[i+1]; j++ ) {
12738965ea79SLois Curfman McInnes         procsnz[i] += rowlengths[j];
12748965ea79SLois Curfman McInnes       }
12758965ea79SLois Curfman McInnes     }
1276606d414cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
12778965ea79SLois Curfman McInnes 
12788965ea79SLois Curfman McInnes     /* determine max buffer needed and allocate it */
12798965ea79SLois Curfman McInnes     maxnz = 0;
12808965ea79SLois Curfman McInnes     for ( i=0; i<size; i++ ) {
12810452661fSBarry Smith       maxnz = PetscMax(maxnz,procsnz[i]);
12828965ea79SLois Curfman McInnes     }
12830452661fSBarry Smith     cols = (int *) PetscMalloc( maxnz*sizeof(int) );CHKPTRQ(cols);
12848965ea79SLois Curfman McInnes 
12858965ea79SLois Curfman McInnes     /* read in my part of the matrix column indices  */
12868965ea79SLois Curfman McInnes     nz = procsnz[0];
12870452661fSBarry Smith     mycols = (int *) PetscMalloc( nz*sizeof(int) );CHKPTRQ(mycols);
12880752156aSBarry Smith     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
12898965ea79SLois Curfman McInnes 
12908965ea79SLois Curfman McInnes     /* read in every one elses and ship off */
12918965ea79SLois Curfman McInnes     for ( i=1; i<size; i++ ) {
12928965ea79SLois Curfman McInnes       nz   = procsnz[i];
12930752156aSBarry Smith       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
1294ca161407SBarry Smith       ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr);
12958965ea79SLois Curfman McInnes     }
1296606d414cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
12973a40ed3dSBarry Smith   } else {
12988965ea79SLois Curfman McInnes     /* determine buffer space needed for message */
12998965ea79SLois Curfman McInnes     nz = 0;
13008965ea79SLois Curfman McInnes     for ( i=0; i<m; i++ ) {
13018965ea79SLois Curfman McInnes       nz += ourlens[i];
13028965ea79SLois Curfman McInnes     }
13030452661fSBarry Smith     mycols = (int*) PetscMalloc( nz*sizeof(int) );CHKPTRQ(mycols);
13048965ea79SLois Curfman McInnes 
13058965ea79SLois Curfman McInnes     /* receive message of column indices*/
1306ca161407SBarry Smith     ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr);
1307ca161407SBarry Smith     ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr);
1308a8c6a408SBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"something is wrong with file");
13098965ea79SLois Curfman McInnes   }
13108965ea79SLois Curfman McInnes 
13118965ea79SLois Curfman McInnes   /* loop over local rows, determining number of off diagonal entries */
1312549d3d68SSatish Balay   ierr = PetscMemzero(offlens,m*sizeof(int));CHKERRQ(ierr);
13138965ea79SLois Curfman McInnes   jj = 0;
13148965ea79SLois Curfman McInnes   for ( i=0; i<m; i++ ) {
13158965ea79SLois Curfman McInnes     for ( j=0; j<ourlens[i]; j++ ) {
13168965ea79SLois Curfman McInnes       if (mycols[jj] < rstart || mycols[jj] >= rend) offlens[i]++;
13178965ea79SLois Curfman McInnes       jj++;
13188965ea79SLois Curfman McInnes     }
13198965ea79SLois Curfman McInnes   }
13208965ea79SLois Curfman McInnes 
13218965ea79SLois Curfman McInnes   /* create our matrix */
13228965ea79SLois Curfman McInnes   for ( i=0; i<m; i++ ) {
13238965ea79SLois Curfman McInnes     ourlens[i] -= offlens[i];
13248965ea79SLois Curfman McInnes   }
1325b4fd4287SBarry Smith   ierr = MatCreateMPIDense(comm,m,PETSC_DECIDE,M,N,PETSC_NULL,newmat);CHKERRQ(ierr);
13268965ea79SLois Curfman McInnes   A = *newmat;
13278965ea79SLois Curfman McInnes   for ( i=0; i<m; i++ ) {
13288965ea79SLois Curfman McInnes     ourlens[i] += offlens[i];
13298965ea79SLois Curfman McInnes   }
13308965ea79SLois Curfman McInnes 
13318965ea79SLois Curfman McInnes   if (!rank) {
13320452661fSBarry Smith     vals = (Scalar *) PetscMalloc( maxnz*sizeof(Scalar) );CHKPTRQ(vals);
13338965ea79SLois Curfman McInnes 
13348965ea79SLois Curfman McInnes     /* read in my part of the matrix numerical values  */
13358965ea79SLois Curfman McInnes     nz = procsnz[0];
13360752156aSBarry Smith     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
13378965ea79SLois Curfman McInnes 
13388965ea79SLois Curfman McInnes     /* insert into matrix */
13398965ea79SLois Curfman McInnes     jj      = rstart;
13408965ea79SLois Curfman McInnes     smycols = mycols;
13418965ea79SLois Curfman McInnes     svals   = vals;
13428965ea79SLois Curfman McInnes     for ( i=0; i<m; i++ ) {
13438965ea79SLois Curfman McInnes       ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr);
13448965ea79SLois Curfman McInnes       smycols += ourlens[i];
13458965ea79SLois Curfman McInnes       svals   += ourlens[i];
13468965ea79SLois Curfman McInnes       jj++;
13478965ea79SLois Curfman McInnes     }
13488965ea79SLois Curfman McInnes 
13498965ea79SLois Curfman McInnes     /* read in other processors and ship out */
13508965ea79SLois Curfman McInnes     for ( i=1; i<size; i++ ) {
13518965ea79SLois Curfman McInnes       nz   = procsnz[i];
13520752156aSBarry Smith       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
1353ca161407SBarry Smith       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr);
13548965ea79SLois Curfman McInnes     }
1355606d414cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
13563a40ed3dSBarry Smith   } else {
13578965ea79SLois Curfman McInnes     /* receive numeric values */
13580452661fSBarry Smith     vals = (Scalar*) PetscMalloc( nz*sizeof(Scalar) );CHKPTRQ(vals);
13598965ea79SLois Curfman McInnes 
13608965ea79SLois Curfman McInnes     /* receive message of values*/
1361ca161407SBarry Smith     ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr);
1362ca161407SBarry Smith     ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
1363a8c6a408SBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"something is wrong with file");
13648965ea79SLois Curfman McInnes 
13658965ea79SLois Curfman McInnes     /* insert into matrix */
13668965ea79SLois Curfman McInnes     jj      = rstart;
13678965ea79SLois Curfman McInnes     smycols = mycols;
13688965ea79SLois Curfman McInnes     svals   = vals;
13698965ea79SLois Curfman McInnes     for ( i=0; i<m; i++ ) {
13708965ea79SLois Curfman McInnes       ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr);
13718965ea79SLois Curfman McInnes       smycols += ourlens[i];
13728965ea79SLois Curfman McInnes       svals   += ourlens[i];
13738965ea79SLois Curfman McInnes       jj++;
13748965ea79SLois Curfman McInnes     }
13758965ea79SLois Curfman McInnes   }
1376606d414cSSatish Balay   ierr = PetscFree(ourlens);CHKERRQ(ierr);
1377606d414cSSatish Balay   ierr = PetscFree(vals);CHKERRQ(ierr);
1378606d414cSSatish Balay   ierr = PetscFree(mycols);CHKERRQ(ierr);
1379606d414cSSatish Balay   ierr = PetscFree(rowners);CHKERRQ(ierr);
13808965ea79SLois Curfman McInnes 
13816d4a8577SBarry Smith   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
13826d4a8577SBarry Smith   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
13833a40ed3dSBarry Smith   PetscFunctionReturn(0);
13848965ea79SLois Curfman McInnes }
138590ace30eSBarry Smith 
138690ace30eSBarry Smith 
138790ace30eSBarry Smith 
138890ace30eSBarry Smith 
138990ace30eSBarry Smith 
1390