1be1d678aSKris Buschelman 2ed3cc1f0SBarry Smith /* 3ed3cc1f0SBarry Smith Basic functions for basic parallel dense matrices. 4ed3cc1f0SBarry Smith */ 5ed3cc1f0SBarry Smith 6c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h> /*I "petscmat.h" I*/ 78949adfdSHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 8baa3c1c6SHong Zhang #include <petscblaslapack.h> 98965ea79SLois Curfman McInnes 10ab92ecdeSBarry Smith /*@ 11ab92ecdeSBarry Smith 12ab92ecdeSBarry Smith MatDenseGetLocalMatrix - For a MATMPIDENSE or MATSEQDENSE matrix returns the sequential 13ab92ecdeSBarry Smith matrix that represents the operator. For sequential matrices it returns itself. 14ab92ecdeSBarry Smith 15ab92ecdeSBarry Smith Input Parameter: 16ab92ecdeSBarry Smith . A - the Seq or MPI dense matrix 17ab92ecdeSBarry Smith 18ab92ecdeSBarry Smith Output Parameter: 19ab92ecdeSBarry Smith . B - the inner matrix 20ab92ecdeSBarry Smith 218e6c10adSSatish Balay Level: intermediate 228e6c10adSSatish Balay 23ab92ecdeSBarry Smith @*/ 24ab92ecdeSBarry Smith PetscErrorCode MatDenseGetLocalMatrix(Mat A,Mat *B) 25ab92ecdeSBarry Smith { 26ab92ecdeSBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 27ab92ecdeSBarry Smith PetscErrorCode ierr; 28ace3abfcSBarry Smith PetscBool flg; 29ab92ecdeSBarry Smith 30ab92ecdeSBarry Smith PetscFunctionBegin; 31d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 32d5ea218eSStefano Zampini PetscValidPointer(B,2); 33251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIDENSE,&flg);CHKERRQ(ierr); 342205254eSKarl Rupp if (flg) *B = mat->A; 352205254eSKarl Rupp else *B = A; 36ab92ecdeSBarry Smith PetscFunctionReturn(0); 37ab92ecdeSBarry Smith } 38ab92ecdeSBarry Smith 39ba8c8a56SBarry Smith PetscErrorCode MatGetRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 40ba8c8a56SBarry Smith { 41ba8c8a56SBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 42ba8c8a56SBarry Smith PetscErrorCode ierr; 43d0f46423SBarry Smith PetscInt lrow,rstart = A->rmap->rstart,rend = A->rmap->rend; 44ba8c8a56SBarry Smith 45ba8c8a56SBarry Smith PetscFunctionBegin; 46e7e72b3dSBarry Smith if (row < rstart || row >= rend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows"); 47ba8c8a56SBarry Smith lrow = row - rstart; 48ba8c8a56SBarry Smith ierr = MatGetRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v);CHKERRQ(ierr); 49ba8c8a56SBarry Smith PetscFunctionReturn(0); 50ba8c8a56SBarry Smith } 51ba8c8a56SBarry Smith 52637a0070SStefano Zampini PetscErrorCode MatRestoreRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 53ba8c8a56SBarry Smith { 54637a0070SStefano Zampini Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 55ba8c8a56SBarry Smith PetscErrorCode ierr; 56637a0070SStefano Zampini PetscInt lrow,rstart = A->rmap->rstart,rend = A->rmap->rend; 57ba8c8a56SBarry Smith 58ba8c8a56SBarry Smith PetscFunctionBegin; 59637a0070SStefano Zampini if (row < rstart || row >= rend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows"); 60637a0070SStefano Zampini lrow = row - rstart; 61637a0070SStefano Zampini ierr = MatRestoreRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v);CHKERRQ(ierr); 62ba8c8a56SBarry Smith PetscFunctionReturn(0); 63ba8c8a56SBarry Smith } 64ba8c8a56SBarry Smith 6511bd1e4dSLisandro Dalcin PetscErrorCode MatGetDiagonalBlock_MPIDense(Mat A,Mat *a) 660de54da6SSatish Balay { 670de54da6SSatish Balay Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 686849ba73SBarry Smith PetscErrorCode ierr; 69d0f46423SBarry Smith PetscInt m = A->rmap->n,rstart = A->rmap->rstart; 7087828ca2SBarry Smith PetscScalar *array; 710de54da6SSatish Balay MPI_Comm comm; 724b6ae80fSStefano Zampini PetscBool flg; 7311bd1e4dSLisandro Dalcin Mat B; 740de54da6SSatish Balay 750de54da6SSatish Balay PetscFunctionBegin; 764b6ae80fSStefano Zampini ierr = MatHasCongruentLayouts(A,&flg);CHKERRQ(ierr); 774b6ae80fSStefano Zampini if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only square matrices supported."); 7811bd1e4dSLisandro Dalcin ierr = PetscObjectQuery((PetscObject)A,"DiagonalBlock",(PetscObject*)&B);CHKERRQ(ierr); 794b6ae80fSStefano Zampini if (!B) { /* This should use a new function, e.g. MatDenseGetSubMatrix (not create) */ 804b6ae80fSStefano Zampini 814b6ae80fSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)mdn->A,MATSEQDENSECUDA,&flg);CHKERRQ(ierr); 824b6ae80fSStefano Zampini if (flg) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Not coded for %s. Send an email to petsc-dev@mcs.anl.gov to request this feature",MATSEQDENSECUDA); 830de54da6SSatish Balay ierr = PetscObjectGetComm((PetscObject)(mdn->A),&comm);CHKERRQ(ierr); 8411bd1e4dSLisandro Dalcin ierr = MatCreate(comm,&B);CHKERRQ(ierr); 8511bd1e4dSLisandro Dalcin ierr = MatSetSizes(B,m,m,m,m);CHKERRQ(ierr); 8611bd1e4dSLisandro Dalcin ierr = MatSetType(B,((PetscObject)mdn->A)->type_name);CHKERRQ(ierr); 874b6ae80fSStefano Zampini ierr = MatDenseGetArrayRead(mdn->A,(const PetscScalar**)&array);CHKERRQ(ierr); 8811bd1e4dSLisandro Dalcin ierr = MatSeqDenseSetPreallocation(B,array+m*rstart);CHKERRQ(ierr); 894b6ae80fSStefano Zampini ierr = MatDenseRestoreArrayRead(mdn->A,(const PetscScalar**)&array);CHKERRQ(ierr); 9011bd1e4dSLisandro Dalcin ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 9111bd1e4dSLisandro Dalcin ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 9211bd1e4dSLisandro Dalcin ierr = PetscObjectCompose((PetscObject)A,"DiagonalBlock",(PetscObject)B);CHKERRQ(ierr); 9311bd1e4dSLisandro Dalcin *a = B; 9411bd1e4dSLisandro Dalcin ierr = MatDestroy(&B);CHKERRQ(ierr); 952205254eSKarl Rupp } else *a = B; 960de54da6SSatish Balay PetscFunctionReturn(0); 970de54da6SSatish Balay } 980de54da6SSatish Balay 9913f74950SBarry Smith PetscErrorCode MatSetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],const PetscScalar v[],InsertMode addv) 1008965ea79SLois Curfman McInnes { 10139b7565bSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)mat->data; 102dfbe8321SBarry Smith PetscErrorCode ierr; 103d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 104ace3abfcSBarry Smith PetscBool roworiented = A->roworiented; 1058965ea79SLois Curfman McInnes 1063a40ed3dSBarry Smith PetscFunctionBegin; 1078965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 1085ef9f2a5SBarry Smith if (idxm[i] < 0) continue; 109e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 1108965ea79SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 1118965ea79SLois Curfman McInnes row = idxm[i] - rstart; 11239b7565bSBarry Smith if (roworiented) { 11339b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv);CHKERRQ(ierr); 1143a40ed3dSBarry Smith } else { 1158965ea79SLois Curfman McInnes for (j=0; j<n; j++) { 1165ef9f2a5SBarry Smith if (idxn[j] < 0) continue; 117e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 11839b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv);CHKERRQ(ierr); 11939b7565bSBarry Smith } 1208965ea79SLois Curfman McInnes } 1212205254eSKarl Rupp } else if (!A->donotstash) { 1225080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 12339b7565bSBarry Smith if (roworiented) { 124b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,idxm[i],n,idxn,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 125d36fbae8SSatish Balay } else { 126b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,idxm[i],n,idxn,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 12739b7565bSBarry Smith } 128b49de8d1SLois Curfman McInnes } 129b49de8d1SLois Curfman McInnes } 1303a40ed3dSBarry Smith PetscFunctionReturn(0); 131b49de8d1SLois Curfman McInnes } 132b49de8d1SLois Curfman McInnes 13313f74950SBarry Smith PetscErrorCode MatGetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 134b49de8d1SLois Curfman McInnes { 135b49de8d1SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 136dfbe8321SBarry Smith PetscErrorCode ierr; 137d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 138b49de8d1SLois Curfman McInnes 1393a40ed3dSBarry Smith PetscFunctionBegin; 140b49de8d1SLois Curfman McInnes for (i=0; i<m; i++) { 141e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); */ 142e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 143b49de8d1SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 144b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 145b49de8d1SLois Curfman McInnes for (j=0; j<n; j++) { 146e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); */ 147e7e72b3dSBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 148b49de8d1SLois Curfman McInnes ierr = MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j);CHKERRQ(ierr); 149b49de8d1SLois Curfman McInnes } 150e7e72b3dSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 1518965ea79SLois Curfman McInnes } 1523a40ed3dSBarry Smith PetscFunctionReturn(0); 1538965ea79SLois Curfman McInnes } 1548965ea79SLois Curfman McInnes 15549a6ff4bSBarry Smith static PetscErrorCode MatDenseGetLDA_MPIDense(Mat A,PetscInt *lda) 15649a6ff4bSBarry Smith { 15749a6ff4bSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 15849a6ff4bSBarry Smith PetscErrorCode ierr; 15949a6ff4bSBarry Smith 16049a6ff4bSBarry Smith PetscFunctionBegin; 16149a6ff4bSBarry Smith ierr = MatDenseGetLDA(a->A,lda);CHKERRQ(ierr); 16249a6ff4bSBarry Smith PetscFunctionReturn(0); 16349a6ff4bSBarry Smith } 16449a6ff4bSBarry Smith 165ad16ce7aSStefano Zampini static PetscErrorCode MatDenseSetLDA_MPIDense(Mat A,PetscInt lda) 166ad16ce7aSStefano Zampini { 167ad16ce7aSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 168ad16ce7aSStefano Zampini PetscErrorCode ierr; 169ad16ce7aSStefano Zampini 170ad16ce7aSStefano Zampini PetscFunctionBegin; 171ad16ce7aSStefano Zampini ierr = MatDenseSetLDA(a->A,lda);CHKERRQ(ierr); 172ad16ce7aSStefano Zampini PetscFunctionReturn(0); 173ad16ce7aSStefano Zampini } 174ad16ce7aSStefano Zampini 175637a0070SStefano Zampini static PetscErrorCode MatDenseGetArray_MPIDense(Mat A,PetscScalar **array) 176ff14e315SSatish Balay { 177ff14e315SSatish Balay Mat_MPIDense *a = (Mat_MPIDense*)A->data; 178dfbe8321SBarry Smith PetscErrorCode ierr; 179ff14e315SSatish Balay 1803a40ed3dSBarry Smith PetscFunctionBegin; 1818c778c55SBarry Smith ierr = MatDenseGetArray(a->A,array);CHKERRQ(ierr); 1823a40ed3dSBarry Smith PetscFunctionReturn(0); 183ff14e315SSatish Balay } 184ff14e315SSatish Balay 185637a0070SStefano Zampini static PetscErrorCode MatDenseGetArrayRead_MPIDense(Mat A,const PetscScalar **array) 1868572280aSBarry Smith { 1878572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1888572280aSBarry Smith PetscErrorCode ierr; 1898572280aSBarry Smith 1908572280aSBarry Smith PetscFunctionBegin; 1918572280aSBarry Smith ierr = MatDenseGetArrayRead(a->A,array);CHKERRQ(ierr); 1928572280aSBarry Smith PetscFunctionReturn(0); 1938572280aSBarry Smith } 1948572280aSBarry Smith 1956947451fSStefano Zampini static PetscErrorCode MatDenseGetArrayWrite_MPIDense(Mat A,PetscScalar **array) 1966947451fSStefano Zampini { 1976947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1986947451fSStefano Zampini PetscErrorCode ierr; 1996947451fSStefano Zampini 2006947451fSStefano Zampini PetscFunctionBegin; 2016947451fSStefano Zampini ierr = MatDenseGetArrayWrite(a->A,array);CHKERRQ(ierr); 2026947451fSStefano Zampini PetscFunctionReturn(0); 2036947451fSStefano Zampini } 2046947451fSStefano Zampini 205637a0070SStefano Zampini static PetscErrorCode MatDensePlaceArray_MPIDense(Mat A,const PetscScalar *array) 206d3042a70SBarry Smith { 207d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 208d3042a70SBarry Smith PetscErrorCode ierr; 209d3042a70SBarry Smith 210d3042a70SBarry Smith PetscFunctionBegin; 211*5ea7661aSPierre Jolivet if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 212*5ea7661aSPierre Jolivet if (a->matinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 213d3042a70SBarry Smith ierr = MatDensePlaceArray(a->A,array);CHKERRQ(ierr); 214d3042a70SBarry Smith PetscFunctionReturn(0); 215d3042a70SBarry Smith } 216d3042a70SBarry Smith 217d3042a70SBarry Smith static PetscErrorCode MatDenseResetArray_MPIDense(Mat A) 218d3042a70SBarry Smith { 219d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 220d3042a70SBarry Smith PetscErrorCode ierr; 221d3042a70SBarry Smith 222d3042a70SBarry Smith PetscFunctionBegin; 223*5ea7661aSPierre Jolivet if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 224*5ea7661aSPierre Jolivet if (a->matinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 225d3042a70SBarry Smith ierr = MatDenseResetArray(a->A);CHKERRQ(ierr); 226d3042a70SBarry Smith PetscFunctionReturn(0); 227d3042a70SBarry Smith } 228d3042a70SBarry Smith 229d5ea218eSStefano Zampini static PetscErrorCode MatDenseReplaceArray_MPIDense(Mat A,const PetscScalar *array) 230d5ea218eSStefano Zampini { 231d5ea218eSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 232d5ea218eSStefano Zampini PetscErrorCode ierr; 233d5ea218eSStefano Zampini 234d5ea218eSStefano Zampini PetscFunctionBegin; 235*5ea7661aSPierre Jolivet if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 236*5ea7661aSPierre Jolivet if (a->matinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 237d5ea218eSStefano Zampini ierr = MatDenseReplaceArray(a->A,array);CHKERRQ(ierr); 238d5ea218eSStefano Zampini PetscFunctionReturn(0); 239d5ea218eSStefano Zampini } 240d5ea218eSStefano Zampini 2417dae84e0SHong Zhang static PetscErrorCode MatCreateSubMatrix_MPIDense(Mat A,IS isrow,IS iscol,MatReuse scall,Mat *B) 242ca3fa75bSLois Curfman McInnes { 243ca3fa75bSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data,*newmatd; 2446849ba73SBarry Smith PetscErrorCode ierr; 245637a0070SStefano Zampini PetscInt lda,i,j,rstart,rend,nrows,ncols,Ncols,nlrows,nlcols; 2465d0c19d7SBarry Smith const PetscInt *irow,*icol; 247637a0070SStefano Zampini const PetscScalar *v; 248637a0070SStefano Zampini PetscScalar *bv; 249ca3fa75bSLois Curfman McInnes Mat newmat; 2504aa3045dSJed Brown IS iscol_local; 25142a884f0SBarry Smith MPI_Comm comm_is,comm_mat; 252ca3fa75bSLois Curfman McInnes 253ca3fa75bSLois Curfman McInnes PetscFunctionBegin; 25442a884f0SBarry Smith ierr = PetscObjectGetComm((PetscObject)A,&comm_mat);CHKERRQ(ierr); 25542a884f0SBarry Smith ierr = PetscObjectGetComm((PetscObject)iscol,&comm_is);CHKERRQ(ierr); 25642a884f0SBarry Smith if (comm_mat != comm_is) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NOTSAMECOMM,"IS communicator must match matrix communicator"); 25742a884f0SBarry Smith 2584aa3045dSJed Brown ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 259ca3fa75bSLois Curfman McInnes ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr); 2604aa3045dSJed Brown ierr = ISGetIndices(iscol_local,&icol);CHKERRQ(ierr); 261b9b97703SBarry Smith ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr); 262b9b97703SBarry Smith ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr); 2634aa3045dSJed Brown ierr = ISGetSize(iscol,&Ncols);CHKERRQ(ierr); /* global number of columns, size of iscol_local */ 264ca3fa75bSLois Curfman McInnes 265ca3fa75bSLois Curfman McInnes /* No parallel redistribution currently supported! Should really check each index set 2667eba5e9cSLois Curfman McInnes to comfirm that it is OK. ... Currently supports only submatrix same partitioning as 2677eba5e9cSLois Curfman McInnes original matrix! */ 268ca3fa75bSLois Curfman McInnes 269ca3fa75bSLois Curfman McInnes ierr = MatGetLocalSize(A,&nlrows,&nlcols);CHKERRQ(ierr); 2707eba5e9cSLois Curfman McInnes ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr); 271ca3fa75bSLois Curfman McInnes 272ca3fa75bSLois Curfman McInnes /* Check submatrix call */ 273ca3fa75bSLois Curfman McInnes if (scall == MAT_REUSE_MATRIX) { 274e32f2f54SBarry Smith /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */ 2757eba5e9cSLois Curfman McInnes /* Really need to test rows and column sizes! */ 276ca3fa75bSLois Curfman McInnes newmat = *B; 277ca3fa75bSLois Curfman McInnes } else { 278ca3fa75bSLois Curfman McInnes /* Create and fill new matrix */ 279ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&newmat);CHKERRQ(ierr); 2804aa3045dSJed Brown ierr = MatSetSizes(newmat,nrows,ncols,PETSC_DECIDE,Ncols);CHKERRQ(ierr); 2817adad957SLisandro Dalcin ierr = MatSetType(newmat,((PetscObject)A)->type_name);CHKERRQ(ierr); 2820298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr); 283ca3fa75bSLois Curfman McInnes } 284ca3fa75bSLois Curfman McInnes 285ca3fa75bSLois Curfman McInnes /* Now extract the data pointers and do the copy, column at a time */ 286ca3fa75bSLois Curfman McInnes newmatd = (Mat_MPIDense*)newmat->data; 287637a0070SStefano Zampini ierr = MatDenseGetArray(newmatd->A,&bv);CHKERRQ(ierr); 288637a0070SStefano Zampini ierr = MatDenseGetArrayRead(mat->A,&v);CHKERRQ(ierr); 289637a0070SStefano Zampini ierr = MatDenseGetLDA(mat->A,&lda);CHKERRQ(ierr); 2904aa3045dSJed Brown for (i=0; i<Ncols; i++) { 291637a0070SStefano Zampini const PetscScalar *av = v + lda*icol[i]; 292ca3fa75bSLois Curfman McInnes for (j=0; j<nrows; j++) { 2937eba5e9cSLois Curfman McInnes *bv++ = av[irow[j] - rstart]; 294ca3fa75bSLois Curfman McInnes } 295ca3fa75bSLois Curfman McInnes } 296637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(mat->A,&v);CHKERRQ(ierr); 297637a0070SStefano Zampini ierr = MatDenseRestoreArray(newmatd->A,&bv);CHKERRQ(ierr); 298ca3fa75bSLois Curfman McInnes 299ca3fa75bSLois Curfman McInnes /* Assemble the matrices so that the correct flags are set */ 300ca3fa75bSLois Curfman McInnes ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 301ca3fa75bSLois Curfman McInnes ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 302ca3fa75bSLois Curfman McInnes 303ca3fa75bSLois Curfman McInnes /* Free work space */ 304ca3fa75bSLois Curfman McInnes ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr); 3055bdf786aSShri Abhyankar ierr = ISRestoreIndices(iscol_local,&icol);CHKERRQ(ierr); 30632bb1f2dSLisandro Dalcin ierr = ISDestroy(&iscol_local);CHKERRQ(ierr); 307ca3fa75bSLois Curfman McInnes *B = newmat; 308ca3fa75bSLois Curfman McInnes PetscFunctionReturn(0); 309ca3fa75bSLois Curfman McInnes } 310ca3fa75bSLois Curfman McInnes 311637a0070SStefano Zampini PetscErrorCode MatDenseRestoreArray_MPIDense(Mat A,PetscScalar **array) 312ff14e315SSatish Balay { 31373a71a0fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 31473a71a0fSBarry Smith PetscErrorCode ierr; 31573a71a0fSBarry Smith 3163a40ed3dSBarry Smith PetscFunctionBegin; 3178c778c55SBarry Smith ierr = MatDenseRestoreArray(a->A,array);CHKERRQ(ierr); 3183a40ed3dSBarry Smith PetscFunctionReturn(0); 319ff14e315SSatish Balay } 320ff14e315SSatish Balay 321637a0070SStefano Zampini PetscErrorCode MatDenseRestoreArrayRead_MPIDense(Mat A,const PetscScalar **array) 3228572280aSBarry Smith { 3238572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 3248572280aSBarry Smith PetscErrorCode ierr; 3258572280aSBarry Smith 3268572280aSBarry Smith PetscFunctionBegin; 3278572280aSBarry Smith ierr = MatDenseRestoreArrayRead(a->A,array);CHKERRQ(ierr); 3288572280aSBarry Smith PetscFunctionReturn(0); 3298572280aSBarry Smith } 3308572280aSBarry Smith 3316947451fSStefano Zampini PetscErrorCode MatDenseRestoreArrayWrite_MPIDense(Mat A,PetscScalar **array) 3326947451fSStefano Zampini { 3336947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 3346947451fSStefano Zampini PetscErrorCode ierr; 3356947451fSStefano Zampini 3366947451fSStefano Zampini PetscFunctionBegin; 3376947451fSStefano Zampini ierr = MatDenseRestoreArrayWrite(a->A,array);CHKERRQ(ierr); 3386947451fSStefano Zampini PetscFunctionReturn(0); 3396947451fSStefano Zampini } 3406947451fSStefano Zampini 341dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode) 3428965ea79SLois Curfman McInnes { 34339ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 344dfbe8321SBarry Smith PetscErrorCode ierr; 34513f74950SBarry Smith PetscInt nstash,reallocs; 3468965ea79SLois Curfman McInnes 3473a40ed3dSBarry Smith PetscFunctionBegin; 348910cf402Sprj- if (mdn->donotstash || mat->nooffprocentries) return(0); 3498965ea79SLois Curfman McInnes 350d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 3518798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 352ae15b995SBarry Smith ierr = PetscInfo2(mdn->A,"Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 3533a40ed3dSBarry Smith PetscFunctionReturn(0); 3548965ea79SLois Curfman McInnes } 3558965ea79SLois Curfman McInnes 356dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode) 3578965ea79SLois Curfman McInnes { 35839ddd567SLois Curfman McInnes Mat_MPIDense *mdn=(Mat_MPIDense*)mat->data; 3596849ba73SBarry Smith PetscErrorCode ierr; 36013f74950SBarry Smith PetscInt i,*row,*col,flg,j,rstart,ncols; 36113f74950SBarry Smith PetscMPIInt n; 36287828ca2SBarry Smith PetscScalar *val; 3638965ea79SLois Curfman McInnes 3643a40ed3dSBarry Smith PetscFunctionBegin; 365910cf402Sprj- if (!mdn->donotstash && !mat->nooffprocentries) { 3668965ea79SLois Curfman McInnes /* wait on receives */ 3677ef1d9bdSSatish Balay while (1) { 3688798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 3697ef1d9bdSSatish Balay if (!flg) break; 3708965ea79SLois Curfman McInnes 3717ef1d9bdSSatish Balay for (i=0; i<n;) { 3727ef1d9bdSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 3732205254eSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 3742205254eSKarl Rupp if (row[j] != rstart) break; 3752205254eSKarl Rupp } 3767ef1d9bdSSatish Balay if (j < n) ncols = j-i; 3777ef1d9bdSSatish Balay else ncols = n-i; 3787ef1d9bdSSatish Balay /* Now assemble all these values with a single function call */ 3794b4eb8d3SJed Brown ierr = MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr); 3807ef1d9bdSSatish Balay i = j; 3818965ea79SLois Curfman McInnes } 3827ef1d9bdSSatish Balay } 3838798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 384910cf402Sprj- } 3858965ea79SLois Curfman McInnes 38639ddd567SLois Curfman McInnes ierr = MatAssemblyBegin(mdn->A,mode);CHKERRQ(ierr); 38739ddd567SLois Curfman McInnes ierr = MatAssemblyEnd(mdn->A,mode);CHKERRQ(ierr); 3888965ea79SLois Curfman McInnes 3896d4a8577SBarry Smith if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 39039ddd567SLois Curfman McInnes ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 3918965ea79SLois Curfman McInnes } 3923a40ed3dSBarry Smith PetscFunctionReturn(0); 3938965ea79SLois Curfman McInnes } 3948965ea79SLois Curfman McInnes 395dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIDense(Mat A) 3968965ea79SLois Curfman McInnes { 397dfbe8321SBarry Smith PetscErrorCode ierr; 39839ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 3993a40ed3dSBarry Smith 4003a40ed3dSBarry Smith PetscFunctionBegin; 4013a40ed3dSBarry Smith ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 4023a40ed3dSBarry Smith PetscFunctionReturn(0); 4038965ea79SLois Curfman McInnes } 4048965ea79SLois Curfman McInnes 405637a0070SStefano Zampini PetscErrorCode MatZeroRows_MPIDense(Mat A,PetscInt n,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 4068965ea79SLois Curfman McInnes { 40739ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 4086849ba73SBarry Smith PetscErrorCode ierr; 409637a0070SStefano Zampini PetscInt i,len,*lrows; 410637a0070SStefano Zampini 411637a0070SStefano Zampini PetscFunctionBegin; 412637a0070SStefano Zampini /* get locally owned rows */ 413637a0070SStefano Zampini ierr = PetscLayoutMapLocal(A->rmap,n,rows,&len,&lrows,NULL);CHKERRQ(ierr); 414637a0070SStefano Zampini /* fix right hand side if needed */ 415637a0070SStefano Zampini if (x && b) { 41697b48c8fSBarry Smith const PetscScalar *xx; 41797b48c8fSBarry Smith PetscScalar *bb; 4188965ea79SLois Curfman McInnes 41997b48c8fSBarry Smith ierr = VecGetArrayRead(x, &xx);CHKERRQ(ierr); 420637a0070SStefano Zampini ierr = VecGetArrayWrite(b, &bb);CHKERRQ(ierr); 421637a0070SStefano Zampini for (i=0;i<len;++i) bb[lrows[i]] = diag*xx[lrows[i]]; 42297b48c8fSBarry Smith ierr = VecRestoreArrayRead(x, &xx);CHKERRQ(ierr); 423637a0070SStefano Zampini ierr = VecRestoreArrayWrite(b, &bb);CHKERRQ(ierr); 42497b48c8fSBarry Smith } 425637a0070SStefano Zampini ierr = MatZeroRows(l->A,len,lrows,0.0,NULL,NULL);CHKERRQ(ierr); 426e2eb51b1SBarry Smith if (diag != 0.0) { 427637a0070SStefano Zampini Vec d; 428b9679d65SBarry Smith 429637a0070SStefano Zampini ierr = MatCreateVecs(A,NULL,&d);CHKERRQ(ierr); 430637a0070SStefano Zampini ierr = VecSet(d,diag);CHKERRQ(ierr); 431637a0070SStefano Zampini ierr = MatDiagonalSet(A,d,INSERT_VALUES);CHKERRQ(ierr); 432637a0070SStefano Zampini ierr = VecDestroy(&d);CHKERRQ(ierr); 433b9679d65SBarry Smith } 434606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 4353a40ed3dSBarry Smith PetscFunctionReturn(0); 4368965ea79SLois Curfman McInnes } 4378965ea79SLois Curfman McInnes 438cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMult_SeqDense(Mat,Vec,Vec); 439cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultAdd_SeqDense(Mat,Vec,Vec,Vec); 440cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTranspose_SeqDense(Mat,Vec,Vec); 441cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTransposeAdd_SeqDense(Mat,Vec,Vec,Vec); 442cc2e6a90SBarry Smith 443dfbe8321SBarry Smith PetscErrorCode MatMult_MPIDense(Mat mat,Vec xx,Vec yy) 4448965ea79SLois Curfman McInnes { 44539ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 446dfbe8321SBarry Smith PetscErrorCode ierr; 447637a0070SStefano Zampini const PetscScalar *ax; 448637a0070SStefano Zampini PetscScalar *ay; 449c456f294SBarry Smith 4503a40ed3dSBarry Smith PetscFunctionBegin; 451637a0070SStefano Zampini ierr = VecGetArrayReadInPlace(xx,&ax);CHKERRQ(ierr); 452637a0070SStefano Zampini ierr = VecGetArrayInPlace(mdn->lvec,&ay);CHKERRQ(ierr); 453637a0070SStefano Zampini ierr = PetscSFBcastBegin(mdn->Mvctx,MPIU_SCALAR,ax,ay);CHKERRQ(ierr); 454637a0070SStefano Zampini ierr = PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ax,ay);CHKERRQ(ierr); 455637a0070SStefano Zampini ierr = VecRestoreArrayInPlace(mdn->lvec,&ay);CHKERRQ(ierr); 456637a0070SStefano Zampini ierr = VecRestoreArrayReadInPlace(xx,&ax);CHKERRQ(ierr); 457637a0070SStefano Zampini ierr = (*mdn->A->ops->mult)(mdn->A,mdn->lvec,yy);CHKERRQ(ierr); 4583a40ed3dSBarry Smith PetscFunctionReturn(0); 4598965ea79SLois Curfman McInnes } 4608965ea79SLois Curfman McInnes 461dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz) 4628965ea79SLois Curfman McInnes { 46339ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 464dfbe8321SBarry Smith PetscErrorCode ierr; 465637a0070SStefano Zampini const PetscScalar *ax; 466637a0070SStefano Zampini PetscScalar *ay; 467c456f294SBarry Smith 4683a40ed3dSBarry Smith PetscFunctionBegin; 469637a0070SStefano Zampini ierr = VecGetArrayReadInPlace(xx,&ax);CHKERRQ(ierr); 470637a0070SStefano Zampini ierr = VecGetArrayInPlace(mdn->lvec,&ay);CHKERRQ(ierr); 471637a0070SStefano Zampini ierr = PetscSFBcastBegin(mdn->Mvctx,MPIU_SCALAR,ax,ay);CHKERRQ(ierr); 472637a0070SStefano Zampini ierr = PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ax,ay);CHKERRQ(ierr); 473637a0070SStefano Zampini ierr = VecRestoreArrayInPlace(mdn->lvec,&ay);CHKERRQ(ierr); 474637a0070SStefano Zampini ierr = VecRestoreArrayReadInPlace(xx,&ax);CHKERRQ(ierr); 475637a0070SStefano Zampini ierr = (*mdn->A->ops->multadd)(mdn->A,mdn->lvec,yy,zz);CHKERRQ(ierr); 4763a40ed3dSBarry Smith PetscFunctionReturn(0); 4778965ea79SLois Curfman McInnes } 4788965ea79SLois Curfman McInnes 479dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIDense(Mat A,Vec xx,Vec yy) 480096963f5SLois Curfman McInnes { 481096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 482dfbe8321SBarry Smith PetscErrorCode ierr; 483637a0070SStefano Zampini const PetscScalar *ax; 484637a0070SStefano Zampini PetscScalar *ay; 485096963f5SLois Curfman McInnes 4863a40ed3dSBarry Smith PetscFunctionBegin; 487637a0070SStefano Zampini ierr = VecSet(yy,0.0);CHKERRQ(ierr); 488637a0070SStefano Zampini ierr = (*a->A->ops->multtranspose)(a->A,xx,a->lvec);CHKERRQ(ierr); 489637a0070SStefano Zampini ierr = VecGetArrayReadInPlace(a->lvec,&ax);CHKERRQ(ierr); 490637a0070SStefano Zampini ierr = VecGetArrayInPlace(yy,&ay);CHKERRQ(ierr); 491637a0070SStefano Zampini ierr = PetscSFReduceBegin(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM);CHKERRQ(ierr); 492637a0070SStefano Zampini ierr = PetscSFReduceEnd(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM);CHKERRQ(ierr); 493637a0070SStefano Zampini ierr = VecRestoreArrayReadInPlace(a->lvec,&ax);CHKERRQ(ierr); 494637a0070SStefano Zampini ierr = VecRestoreArrayInPlace(yy,&ay);CHKERRQ(ierr); 4953a40ed3dSBarry Smith PetscFunctionReturn(0); 496096963f5SLois Curfman McInnes } 497096963f5SLois Curfman McInnes 498dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz) 499096963f5SLois Curfman McInnes { 500096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 501dfbe8321SBarry Smith PetscErrorCode ierr; 502637a0070SStefano Zampini const PetscScalar *ax; 503637a0070SStefano Zampini PetscScalar *ay; 504096963f5SLois Curfman McInnes 5053a40ed3dSBarry Smith PetscFunctionBegin; 5063501a2bdSLois Curfman McInnes ierr = VecCopy(yy,zz);CHKERRQ(ierr); 507637a0070SStefano Zampini ierr = (*a->A->ops->multtranspose)(a->A,xx,a->lvec);CHKERRQ(ierr); 508637a0070SStefano Zampini ierr = VecGetArrayReadInPlace(a->lvec,&ax);CHKERRQ(ierr); 509637a0070SStefano Zampini ierr = VecGetArrayInPlace(zz,&ay);CHKERRQ(ierr); 510637a0070SStefano Zampini ierr = PetscSFReduceBegin(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM);CHKERRQ(ierr); 511637a0070SStefano Zampini ierr = PetscSFReduceEnd(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM);CHKERRQ(ierr); 512637a0070SStefano Zampini ierr = VecRestoreArrayReadInPlace(a->lvec,&ax);CHKERRQ(ierr); 513637a0070SStefano Zampini ierr = VecRestoreArrayInPlace(zz,&ay);CHKERRQ(ierr); 5143a40ed3dSBarry Smith PetscFunctionReturn(0); 515096963f5SLois Curfman McInnes } 516096963f5SLois Curfman McInnes 517dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIDense(Mat A,Vec v) 5188965ea79SLois Curfman McInnes { 51939ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 520dfbe8321SBarry Smith PetscErrorCode ierr; 521637a0070SStefano Zampini PetscInt lda,len,i,n,m = A->rmap->n,radd; 52287828ca2SBarry Smith PetscScalar *x,zero = 0.0; 523637a0070SStefano Zampini const PetscScalar *av; 524ed3cc1f0SBarry Smith 5253a40ed3dSBarry Smith PetscFunctionBegin; 5262dcb1b2aSMatthew Knepley ierr = VecSet(v,zero);CHKERRQ(ierr); 5271ebc52fbSHong Zhang ierr = VecGetArray(v,&x);CHKERRQ(ierr); 528096963f5SLois Curfman McInnes ierr = VecGetSize(v,&n);CHKERRQ(ierr); 529e32f2f54SBarry Smith if (n != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec"); 530d0f46423SBarry Smith len = PetscMin(a->A->rmap->n,a->A->cmap->n); 531d0f46423SBarry Smith radd = A->rmap->rstart*m; 532637a0070SStefano Zampini ierr = MatDenseGetArrayRead(a->A,&av);CHKERRQ(ierr); 533637a0070SStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 53444cd7ae7SLois Curfman McInnes for (i=0; i<len; i++) { 535637a0070SStefano Zampini x[i] = av[radd + i*lda + i]; 536096963f5SLois Curfman McInnes } 537637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(a->A,&av);CHKERRQ(ierr); 5381ebc52fbSHong Zhang ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 5393a40ed3dSBarry Smith PetscFunctionReturn(0); 5408965ea79SLois Curfman McInnes } 5418965ea79SLois Curfman McInnes 542dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIDense(Mat mat) 5438965ea79SLois Curfman McInnes { 5443501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 545dfbe8321SBarry Smith PetscErrorCode ierr; 546ed3cc1f0SBarry Smith 5473a40ed3dSBarry Smith PetscFunctionBegin; 548aa482453SBarry Smith #if defined(PETSC_USE_LOG) 549d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D, Cols=%D",mat->rmap->N,mat->cmap->N); 5508965ea79SLois Curfman McInnes #endif 5518798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 552*5ea7661aSPierre Jolivet if (mdn->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 553*5ea7661aSPierre Jolivet if (mdn->matinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 5546bf464f9SBarry Smith ierr = MatDestroy(&mdn->A);CHKERRQ(ierr); 5556bf464f9SBarry Smith ierr = VecDestroy(&mdn->lvec);CHKERRQ(ierr); 556637a0070SStefano Zampini ierr = PetscSFDestroy(&mdn->Mvctx);CHKERRQ(ierr); 5576947451fSStefano Zampini ierr = VecDestroy(&mdn->cvec);CHKERRQ(ierr); 558*5ea7661aSPierre Jolivet ierr = MatDestroy(&mdn->cmat);CHKERRQ(ierr); 55901b82886SBarry Smith 560bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 561dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 5628baccfbdSHong Zhang 56349a6ff4bSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",NULL);CHKERRQ(ierr); 564ad16ce7aSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseSetLDA_C",NULL);CHKERRQ(ierr); 5658baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",NULL);CHKERRQ(ierr); 5668572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",NULL);CHKERRQ(ierr); 5678572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",NULL);CHKERRQ(ierr); 5688572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",NULL);CHKERRQ(ierr); 5696947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayWrite_C",NULL);CHKERRQ(ierr); 5706947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayWrite_C",NULL);CHKERRQ(ierr); 571d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",NULL);CHKERRQ(ierr); 572d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",NULL);CHKERRQ(ierr); 573d5ea218eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseReplaceArray_C",NULL);CHKERRQ(ierr); 5748baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 5758baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",NULL);CHKERRQ(ierr); 5768baccfbdSHong Zhang #endif 577bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",NULL);CHKERRQ(ierr); 5784222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 5794222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaij_C",NULL);CHKERRQ(ierr); 5806718818eSStefano Zampini #if defined (PETSC_HAVE_CUDA) 5816718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaijcusparse_mpidense_C",NULL);CHKERRQ(ierr); 5826718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaijcusparse_C",NULL);CHKERRQ(ierr); 5836718818eSStefano Zampini #endif 58486aefd0dSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",NULL);CHKERRQ(ierr); 58586aefd0dSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",NULL);CHKERRQ(ierr); 5866947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",NULL);CHKERRQ(ierr); 5876947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",NULL);CHKERRQ(ierr); 5886947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",NULL);CHKERRQ(ierr); 5896947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",NULL);CHKERRQ(ierr); 5906947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",NULL);CHKERRQ(ierr); 5916947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",NULL);CHKERRQ(ierr); 592*5ea7661aSPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetSubMatrix_C",NULL);CHKERRQ(ierr); 593*5ea7661aSPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreSubMatrix_C",NULL);CHKERRQ(ierr); 5943a40ed3dSBarry Smith PetscFunctionReturn(0); 5958965ea79SLois Curfman McInnes } 59639ddd567SLois Curfman McInnes 59752c5f739Sprj- PETSC_INTERN PetscErrorCode MatView_SeqDense(Mat,PetscViewer); 59852c5f739Sprj- 5999804daf3SBarry Smith #include <petscdraw.h> 6006849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 6018965ea79SLois Curfman McInnes { 60239ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 603dfbe8321SBarry Smith PetscErrorCode ierr; 6047da1fb6eSBarry Smith PetscMPIInt rank = mdn->rank; 60519fd82e9SBarry Smith PetscViewerType vtype; 606ace3abfcSBarry Smith PetscBool iascii,isdraw; 607b0a32e0cSBarry Smith PetscViewer sviewer; 608f3ef73ceSBarry Smith PetscViewerFormat format; 6098965ea79SLois Curfman McInnes 6103a40ed3dSBarry Smith PetscFunctionBegin; 611251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 612251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 61332077d6dSBarry Smith if (iascii) { 614b0a32e0cSBarry Smith ierr = PetscViewerGetType(viewer,&vtype);CHKERRQ(ierr); 615b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 616456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 6174e220ebcSLois Curfman McInnes MatInfo info; 618888f2ed8SSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 6191575c14dSBarry Smith ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr); 6207b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer," [%d] local rows %D nz %D nz alloced %D mem %D \n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory);CHKERRQ(ierr); 621b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 6221575c14dSBarry Smith ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr); 623637a0070SStefano Zampini ierr = PetscSFView(mdn->Mvctx,viewer);CHKERRQ(ierr); 6243a40ed3dSBarry Smith PetscFunctionReturn(0); 625fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 6263a40ed3dSBarry Smith PetscFunctionReturn(0); 6278965ea79SLois Curfman McInnes } 628f1af5d2fSBarry Smith } else if (isdraw) { 629b0a32e0cSBarry Smith PetscDraw draw; 630ace3abfcSBarry Smith PetscBool isnull; 631f1af5d2fSBarry Smith 632b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 633b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 634f1af5d2fSBarry Smith if (isnull) PetscFunctionReturn(0); 635f1af5d2fSBarry Smith } 63677ed5343SBarry Smith 6377da1fb6eSBarry Smith { 6388965ea79SLois Curfman McInnes /* assemble the entire matrix onto first processor. */ 6398965ea79SLois Curfman McInnes Mat A; 640d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,m,row,i,nz; 641ba8c8a56SBarry Smith PetscInt *cols; 642ba8c8a56SBarry Smith PetscScalar *vals; 6438965ea79SLois Curfman McInnes 644ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr); 6458965ea79SLois Curfman McInnes if (!rank) { 646f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 6473a40ed3dSBarry Smith } else { 648f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 6498965ea79SLois Curfman McInnes } 6507adad957SLisandro Dalcin /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */ 651878740d9SKris Buschelman ierr = MatSetType(A,MATMPIDENSE);CHKERRQ(ierr); 6520298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(A,NULL);CHKERRQ(ierr); 6533bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr); 6548965ea79SLois Curfman McInnes 65539ddd567SLois Curfman McInnes /* Copy the matrix ... This isn't the most efficient means, 65639ddd567SLois Curfman McInnes but it's quick for now */ 65751022da4SBarry Smith A->insertmode = INSERT_VALUES; 6582205254eSKarl Rupp 6592205254eSKarl Rupp row = mat->rmap->rstart; 6602205254eSKarl Rupp m = mdn->A->rmap->n; 6618965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 662ba8c8a56SBarry Smith ierr = MatGetRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 663ba8c8a56SBarry Smith ierr = MatSetValues_MPIDense(A,1,&row,nz,cols,vals,INSERT_VALUES);CHKERRQ(ierr); 664ba8c8a56SBarry Smith ierr = MatRestoreRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 66539ddd567SLois Curfman McInnes row++; 6668965ea79SLois Curfman McInnes } 6678965ea79SLois Curfman McInnes 6686d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 6696d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 6703f08860eSBarry Smith ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 671b9b97703SBarry Smith if (!rank) { 6721a9d3c3cSBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPIDense*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr); 6737da1fb6eSBarry Smith ierr = MatView_SeqDense(((Mat_MPIDense*)(A->data))->A,sviewer);CHKERRQ(ierr); 6748965ea79SLois Curfman McInnes } 6753f08860eSBarry Smith ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 676b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 6776bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 6788965ea79SLois Curfman McInnes } 6793a40ed3dSBarry Smith PetscFunctionReturn(0); 6808965ea79SLois Curfman McInnes } 6818965ea79SLois Curfman McInnes 682dfbe8321SBarry Smith PetscErrorCode MatView_MPIDense(Mat mat,PetscViewer viewer) 6838965ea79SLois Curfman McInnes { 684dfbe8321SBarry Smith PetscErrorCode ierr; 685ace3abfcSBarry Smith PetscBool iascii,isbinary,isdraw,issocket; 6868965ea79SLois Curfman McInnes 687433994e6SBarry Smith PetscFunctionBegin; 688251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 689251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 690251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 691251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 6920f5bd95cSBarry Smith 69332077d6dSBarry Smith if (iascii || issocket || isdraw) { 694f1af5d2fSBarry Smith ierr = MatView_MPIDense_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 6950f5bd95cSBarry Smith } else if (isbinary) { 6968491ab44SLisandro Dalcin ierr = MatView_Dense_Binary(mat,viewer);CHKERRQ(ierr); 69711aeaf0aSBarry Smith } 6983a40ed3dSBarry Smith PetscFunctionReturn(0); 6998965ea79SLois Curfman McInnes } 7008965ea79SLois Curfman McInnes 701dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info) 7028965ea79SLois Curfman McInnes { 7033501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 7043501a2bdSLois Curfman McInnes Mat mdn = mat->A; 705dfbe8321SBarry Smith PetscErrorCode ierr; 7063966268fSBarry Smith PetscLogDouble isend[5],irecv[5]; 7078965ea79SLois Curfman McInnes 7083a40ed3dSBarry Smith PetscFunctionBegin; 7094e220ebcSLois Curfman McInnes info->block_size = 1.0; 7102205254eSKarl Rupp 7114e220ebcSLois Curfman McInnes ierr = MatGetInfo(mdn,MAT_LOCAL,info);CHKERRQ(ierr); 7122205254eSKarl Rupp 7134e220ebcSLois Curfman McInnes isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 7144e220ebcSLois Curfman McInnes isend[3] = info->memory; isend[4] = info->mallocs; 7158965ea79SLois Curfman McInnes if (flag == MAT_LOCAL) { 7164e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 7174e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 7184e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 7194e220ebcSLois Curfman McInnes info->memory = isend[3]; 7204e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 7218965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 7223966268fSBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 7232205254eSKarl Rupp 7244e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7254e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7264e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7274e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7284e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7298965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 7303966268fSBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 7312205254eSKarl Rupp 7324e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7334e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7344e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7354e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7364e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7378965ea79SLois Curfman McInnes } 7384e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 7394e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 7404e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 7413a40ed3dSBarry Smith PetscFunctionReturn(0); 7428965ea79SLois Curfman McInnes } 7438965ea79SLois Curfman McInnes 744ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIDense(Mat A,MatOption op,PetscBool flg) 7458965ea79SLois Curfman McInnes { 74639ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 747dfbe8321SBarry Smith PetscErrorCode ierr; 7488965ea79SLois Curfman McInnes 7493a40ed3dSBarry Smith PetscFunctionBegin; 75012c028f9SKris Buschelman switch (op) { 751512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 75212c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 75312c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 75443674050SBarry Smith MatCheckPreallocated(A,1); 7554e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 75612c028f9SKris Buschelman break; 75712c028f9SKris Buschelman case MAT_ROW_ORIENTED: 75843674050SBarry Smith MatCheckPreallocated(A,1); 7594e0d8c25SBarry Smith a->roworiented = flg; 7604e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 76112c028f9SKris Buschelman break; 7624e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 76313fa8e87SLisandro Dalcin case MAT_KEEP_NONZERO_PATTERN: 76412c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 765071fcb05SBarry Smith case MAT_SORTED_FULL: 766290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 76712c028f9SKris Buschelman break; 76812c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 7694e0d8c25SBarry Smith a->donotstash = flg; 77012c028f9SKris Buschelman break; 77177e54ba9SKris Buschelman case MAT_SYMMETRIC: 77277e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 7739a4540c5SBarry Smith case MAT_HERMITIAN: 7749a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 775600fe468SBarry Smith case MAT_IGNORE_LOWER_TRIANGULAR: 7765d7aebe8SStefano Zampini case MAT_IGNORE_ZERO_ENTRIES: 777290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 77877e54ba9SKris Buschelman break; 77912c028f9SKris Buschelman default: 780e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %s",MatOptions[op]); 7813a40ed3dSBarry Smith } 7823a40ed3dSBarry Smith PetscFunctionReturn(0); 7838965ea79SLois Curfman McInnes } 7848965ea79SLois Curfman McInnes 785dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIDense(Mat A,Vec ll,Vec rr) 7865b2fa520SLois Curfman McInnes { 7875b2fa520SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 788637a0070SStefano Zampini const PetscScalar *l; 789637a0070SStefano Zampini PetscScalar x,*v,*vv,*r; 790dfbe8321SBarry Smith PetscErrorCode ierr; 791637a0070SStefano Zampini PetscInt i,j,s2a,s3a,s2,s3,m=mdn->A->rmap->n,n=mdn->A->cmap->n,lda; 7925b2fa520SLois Curfman McInnes 7935b2fa520SLois Curfman McInnes PetscFunctionBegin; 794637a0070SStefano Zampini ierr = MatDenseGetArray(mdn->A,&vv);CHKERRQ(ierr); 795637a0070SStefano Zampini ierr = MatDenseGetLDA(mdn->A,&lda);CHKERRQ(ierr); 79672d926a5SLois Curfman McInnes ierr = MatGetLocalSize(A,&s2,&s3);CHKERRQ(ierr); 7975b2fa520SLois Curfman McInnes if (ll) { 79872d926a5SLois Curfman McInnes ierr = VecGetLocalSize(ll,&s2a);CHKERRQ(ierr); 799637a0070SStefano Zampini if (s2a != s2) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vector non-conforming local size, %D != %D", s2a, s2); 800bca11509SBarry Smith ierr = VecGetArrayRead(ll,&l);CHKERRQ(ierr); 8015b2fa520SLois Curfman McInnes for (i=0; i<m; i++) { 8025b2fa520SLois Curfman McInnes x = l[i]; 803637a0070SStefano Zampini v = vv + i; 804637a0070SStefano Zampini for (j=0; j<n; j++) { (*v) *= x; v+= lda;} 8055b2fa520SLois Curfman McInnes } 806bca11509SBarry Smith ierr = VecRestoreArrayRead(ll,&l);CHKERRQ(ierr); 807637a0070SStefano Zampini ierr = PetscLogFlops(1.0*n*m);CHKERRQ(ierr); 8085b2fa520SLois Curfman McInnes } 8095b2fa520SLois Curfman McInnes if (rr) { 810637a0070SStefano Zampini const PetscScalar *ar; 811637a0070SStefano Zampini 812175be7b4SMatthew Knepley ierr = VecGetLocalSize(rr,&s3a);CHKERRQ(ierr); 813e32f2f54SBarry Smith if (s3a != s3) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vec non-conforming local size, %d != %d.", s3a, s3); 814637a0070SStefano Zampini ierr = VecGetArrayRead(rr,&ar);CHKERRQ(ierr); 815637a0070SStefano Zampini ierr = VecGetArray(mdn->lvec,&r);CHKERRQ(ierr); 816637a0070SStefano Zampini ierr = PetscSFBcastBegin(mdn->Mvctx,MPIU_SCALAR,ar,r);CHKERRQ(ierr); 817637a0070SStefano Zampini ierr = PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ar,r);CHKERRQ(ierr); 818637a0070SStefano Zampini ierr = VecRestoreArrayRead(rr,&ar);CHKERRQ(ierr); 8195b2fa520SLois Curfman McInnes for (i=0; i<n; i++) { 8205b2fa520SLois Curfman McInnes x = r[i]; 821637a0070SStefano Zampini v = vv + i*lda; 8222205254eSKarl Rupp for (j=0; j<m; j++) (*v++) *= x; 8235b2fa520SLois Curfman McInnes } 824637a0070SStefano Zampini ierr = VecRestoreArray(mdn->lvec,&r);CHKERRQ(ierr); 825637a0070SStefano Zampini ierr = PetscLogFlops(1.0*n*m);CHKERRQ(ierr); 8265b2fa520SLois Curfman McInnes } 827637a0070SStefano Zampini ierr = MatDenseRestoreArray(mdn->A,&vv);CHKERRQ(ierr); 8285b2fa520SLois Curfman McInnes PetscFunctionReturn(0); 8295b2fa520SLois Curfman McInnes } 8305b2fa520SLois Curfman McInnes 831dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIDense(Mat A,NormType type,PetscReal *nrm) 832096963f5SLois Curfman McInnes { 8333501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 834dfbe8321SBarry Smith PetscErrorCode ierr; 83513f74950SBarry Smith PetscInt i,j; 836329f5518SBarry Smith PetscReal sum = 0.0; 837637a0070SStefano Zampini const PetscScalar *av,*v; 8383501a2bdSLois Curfman McInnes 8393a40ed3dSBarry Smith PetscFunctionBegin; 840637a0070SStefano Zampini ierr = MatDenseGetArrayRead(mdn->A,&av);CHKERRQ(ierr); 841637a0070SStefano Zampini v = av; 8423501a2bdSLois Curfman McInnes if (mdn->size == 1) { 843064f8208SBarry Smith ierr = MatNorm(mdn->A,type,nrm);CHKERRQ(ierr); 8443501a2bdSLois Curfman McInnes } else { 8453501a2bdSLois Curfman McInnes if (type == NORM_FROBENIUS) { 846d0f46423SBarry Smith for (i=0; i<mdn->A->cmap->n*mdn->A->rmap->n; i++) { 847329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 8483501a2bdSLois Curfman McInnes } 849b2566f29SBarry Smith ierr = MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 8508f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 851dc0b31edSSatish Balay ierr = PetscLogFlops(2.0*mdn->A->cmap->n*mdn->A->rmap->n);CHKERRQ(ierr); 8523a40ed3dSBarry Smith } else if (type == NORM_1) { 853329f5518SBarry Smith PetscReal *tmp,*tmp2; 854580bdb30SBarry Smith ierr = PetscCalloc2(A->cmap->N,&tmp,A->cmap->N,&tmp2);CHKERRQ(ierr); 855064f8208SBarry Smith *nrm = 0.0; 856637a0070SStefano Zampini v = av; 857d0f46423SBarry Smith for (j=0; j<mdn->A->cmap->n; j++) { 858d0f46423SBarry Smith for (i=0; i<mdn->A->rmap->n; i++) { 85967e560aaSBarry Smith tmp[j] += PetscAbsScalar(*v); v++; 8603501a2bdSLois Curfman McInnes } 8613501a2bdSLois Curfman McInnes } 862b2566f29SBarry Smith ierr = MPIU_Allreduce(tmp,tmp2,A->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 863d0f46423SBarry Smith for (j=0; j<A->cmap->N; j++) { 864064f8208SBarry Smith if (tmp2[j] > *nrm) *nrm = tmp2[j]; 8653501a2bdSLois Curfman McInnes } 8668627564fSBarry Smith ierr = PetscFree2(tmp,tmp2);CHKERRQ(ierr); 867d0f46423SBarry Smith ierr = PetscLogFlops(A->cmap->n*A->rmap->n);CHKERRQ(ierr); 8683a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 869329f5518SBarry Smith PetscReal ntemp; 8703501a2bdSLois Curfman McInnes ierr = MatNorm(mdn->A,type,&ntemp);CHKERRQ(ierr); 871b2566f29SBarry Smith ierr = MPIU_Allreduce(&ntemp,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 872ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"No support for two norm"); 8733501a2bdSLois Curfman McInnes } 874637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(mdn->A,&av);CHKERRQ(ierr); 8753a40ed3dSBarry Smith PetscFunctionReturn(0); 8763501a2bdSLois Curfman McInnes } 8773501a2bdSLois Curfman McInnes 878fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIDense(Mat A,MatReuse reuse,Mat *matout) 8793501a2bdSLois Curfman McInnes { 8803501a2bdSLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 8813501a2bdSLois Curfman McInnes Mat B; 882d0f46423SBarry Smith PetscInt M = A->rmap->N,N = A->cmap->N,m,n,*rwork,rstart = A->rmap->rstart; 8836849ba73SBarry Smith PetscErrorCode ierr; 884637a0070SStefano Zampini PetscInt j,i,lda; 88587828ca2SBarry Smith PetscScalar *v; 8863501a2bdSLois Curfman McInnes 8873a40ed3dSBarry Smith PetscFunctionBegin; 888cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 889ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 890d0f46423SBarry Smith ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr); 8917adad957SLisandro Dalcin ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr); 8920298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(B,NULL);CHKERRQ(ierr); 893637a0070SStefano Zampini } else B = *matout; 8943501a2bdSLois Curfman McInnes 895637a0070SStefano Zampini m = a->A->rmap->n; n = a->A->cmap->n; 896637a0070SStefano Zampini ierr = MatDenseGetArrayRead(a->A,(const PetscScalar**)&v);CHKERRQ(ierr); 897637a0070SStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 898785e854fSJed Brown ierr = PetscMalloc1(m,&rwork);CHKERRQ(ierr); 8993501a2bdSLois Curfman McInnes for (i=0; i<m; i++) rwork[i] = rstart + i; 9001acff37aSSatish Balay for (j=0; j<n; j++) { 9013501a2bdSLois Curfman McInnes ierr = MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES);CHKERRQ(ierr); 902637a0070SStefano Zampini v += lda; 9033501a2bdSLois Curfman McInnes } 904637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(a->A,(const PetscScalar**)&v);CHKERRQ(ierr); 905606d414cSSatish Balay ierr = PetscFree(rwork);CHKERRQ(ierr); 9066d4a8577SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 9076d4a8577SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 908cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) { 9093501a2bdSLois Curfman McInnes *matout = B; 9103501a2bdSLois Curfman McInnes } else { 91128be2f97SBarry Smith ierr = MatHeaderMerge(A,&B);CHKERRQ(ierr); 9123501a2bdSLois Curfman McInnes } 9133a40ed3dSBarry Smith PetscFunctionReturn(0); 914096963f5SLois Curfman McInnes } 915096963f5SLois Curfman McInnes 9166849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat*); 91752c5f739Sprj- PETSC_INTERN PetscErrorCode MatScale_MPIDense(Mat,PetscScalar); 9188965ea79SLois Curfman McInnes 9194994cf47SJed Brown PetscErrorCode MatSetUp_MPIDense(Mat A) 920273d9f13SBarry Smith { 921dfbe8321SBarry Smith PetscErrorCode ierr; 922273d9f13SBarry Smith 923273d9f13SBarry Smith PetscFunctionBegin; 92418992e5dSStefano Zampini ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr); 92518992e5dSStefano Zampini ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr); 92618992e5dSStefano Zampini if (!A->preallocated) { 927273d9f13SBarry Smith ierr = MatMPIDenseSetPreallocation(A,0);CHKERRQ(ierr); 92818992e5dSStefano Zampini } 929273d9f13SBarry Smith PetscFunctionReturn(0); 930273d9f13SBarry Smith } 931273d9f13SBarry Smith 932488007eeSBarry Smith PetscErrorCode MatAXPY_MPIDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str) 933488007eeSBarry Smith { 934488007eeSBarry Smith PetscErrorCode ierr; 935488007eeSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)Y->data, *B = (Mat_MPIDense*)X->data; 936488007eeSBarry Smith 937488007eeSBarry Smith PetscFunctionBegin; 938488007eeSBarry Smith ierr = MatAXPY(A->A,alpha,B->A,str);CHKERRQ(ierr); 939488007eeSBarry Smith PetscFunctionReturn(0); 940488007eeSBarry Smith } 941488007eeSBarry Smith 9427087cfbeSBarry Smith PetscErrorCode MatConjugate_MPIDense(Mat mat) 943ba337c44SJed Brown { 944ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)mat->data; 945ba337c44SJed Brown PetscErrorCode ierr; 946ba337c44SJed Brown 947ba337c44SJed Brown PetscFunctionBegin; 948ba337c44SJed Brown ierr = MatConjugate(a->A);CHKERRQ(ierr); 949ba337c44SJed Brown PetscFunctionReturn(0); 950ba337c44SJed Brown } 951ba337c44SJed Brown 952ba337c44SJed Brown PetscErrorCode MatRealPart_MPIDense(Mat A) 953ba337c44SJed Brown { 954ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 955ba337c44SJed Brown PetscErrorCode ierr; 956ba337c44SJed Brown 957ba337c44SJed Brown PetscFunctionBegin; 958ba337c44SJed Brown ierr = MatRealPart(a->A);CHKERRQ(ierr); 959ba337c44SJed Brown PetscFunctionReturn(0); 960ba337c44SJed Brown } 961ba337c44SJed Brown 962ba337c44SJed Brown PetscErrorCode MatImaginaryPart_MPIDense(Mat A) 963ba337c44SJed Brown { 964ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 965ba337c44SJed Brown PetscErrorCode ierr; 966ba337c44SJed Brown 967ba337c44SJed Brown PetscFunctionBegin; 968ba337c44SJed Brown ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 969ba337c44SJed Brown PetscFunctionReturn(0); 970ba337c44SJed Brown } 971ba337c44SJed Brown 97249a6ff4bSBarry Smith static PetscErrorCode MatGetColumnVector_MPIDense(Mat A,Vec v,PetscInt col) 97349a6ff4bSBarry Smith { 97449a6ff4bSBarry Smith PetscErrorCode ierr; 975637a0070SStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*) A->data; 97649a6ff4bSBarry Smith 97749a6ff4bSBarry Smith PetscFunctionBegin; 978637a0070SStefano Zampini if (!a->A) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Missing local matrix"); 979637a0070SStefano Zampini if (!a->A->ops->getcolumnvector) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Missing get column operation"); 980637a0070SStefano Zampini ierr = (*a->A->ops->getcolumnvector)(a->A,v,col);CHKERRQ(ierr); 98149a6ff4bSBarry Smith PetscFunctionReturn(0); 98249a6ff4bSBarry Smith } 98349a6ff4bSBarry Smith 98452c5f739Sprj- PETSC_INTERN PetscErrorCode MatGetColumnNorms_SeqDense(Mat,NormType,PetscReal*); 98552c5f739Sprj- 9860716a85fSBarry Smith PetscErrorCode MatGetColumnNorms_MPIDense(Mat A,NormType type,PetscReal *norms) 9870716a85fSBarry Smith { 9880716a85fSBarry Smith PetscErrorCode ierr; 9890716a85fSBarry Smith PetscInt i,n; 9900716a85fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*) A->data; 9910716a85fSBarry Smith PetscReal *work; 9920716a85fSBarry Smith 9930716a85fSBarry Smith PetscFunctionBegin; 9940298fd71SBarry Smith ierr = MatGetSize(A,NULL,&n);CHKERRQ(ierr); 995785e854fSJed Brown ierr = PetscMalloc1(n,&work);CHKERRQ(ierr); 9960716a85fSBarry Smith ierr = MatGetColumnNorms_SeqDense(a->A,type,work);CHKERRQ(ierr); 9970716a85fSBarry Smith if (type == NORM_2) { 9980716a85fSBarry Smith for (i=0; i<n; i++) work[i] *= work[i]; 9990716a85fSBarry Smith } 10000716a85fSBarry Smith if (type == NORM_INFINITY) { 1001b2566f29SBarry Smith ierr = MPIU_Allreduce(work,norms,n,MPIU_REAL,MPIU_MAX,A->hdr.comm);CHKERRQ(ierr); 10020716a85fSBarry Smith } else { 1003b2566f29SBarry Smith ierr = MPIU_Allreduce(work,norms,n,MPIU_REAL,MPIU_SUM,A->hdr.comm);CHKERRQ(ierr); 10040716a85fSBarry Smith } 10050716a85fSBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 10060716a85fSBarry Smith if (type == NORM_2) { 10078f1a2a5eSBarry Smith for (i=0; i<n; i++) norms[i] = PetscSqrtReal(norms[i]); 10080716a85fSBarry Smith } 10090716a85fSBarry Smith PetscFunctionReturn(0); 10100716a85fSBarry Smith } 10110716a85fSBarry Smith 1012637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 10136947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVec_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10146947451fSStefano Zampini { 10156947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10166947451fSStefano Zampini PetscErrorCode ierr; 10176947451fSStefano Zampini PetscInt lda; 10186947451fSStefano Zampini 10196947451fSStefano Zampini PetscFunctionBegin; 1020*5ea7661aSPierre Jolivet if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1021*5ea7661aSPierre Jolivet if (a->matinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 10226947451fSStefano Zampini if (!a->cvec) { 10236947451fSStefano Zampini ierr = VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr); 10246947451fSStefano Zampini } 10256947451fSStefano Zampini a->vecinuse = col + 1; 10266947451fSStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 10276947451fSStefano Zampini ierr = MatDenseCUDAGetArray(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 10286947451fSStefano Zampini ierr = VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr); 10296947451fSStefano Zampini *v = a->cvec; 10306947451fSStefano Zampini PetscFunctionReturn(0); 10316947451fSStefano Zampini } 10326947451fSStefano Zampini 10336947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVec_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10346947451fSStefano Zampini { 10356947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10366947451fSStefano Zampini PetscErrorCode ierr; 10376947451fSStefano Zampini 10386947451fSStefano Zampini PetscFunctionBegin; 1039*5ea7661aSPierre Jolivet if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 10406947451fSStefano Zampini if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector"); 10416947451fSStefano Zampini a->vecinuse = 0; 10426947451fSStefano Zampini ierr = MatDenseCUDARestoreArray(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 10436947451fSStefano Zampini ierr = VecCUDAResetArray(a->cvec);CHKERRQ(ierr); 10446947451fSStefano Zampini *v = NULL; 10456947451fSStefano Zampini PetscFunctionReturn(0); 10466947451fSStefano Zampini } 10476947451fSStefano Zampini 10486947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecRead_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10496947451fSStefano Zampini { 10506947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10516947451fSStefano Zampini PetscInt lda; 10526947451fSStefano Zampini PetscErrorCode ierr; 10536947451fSStefano Zampini 10546947451fSStefano Zampini PetscFunctionBegin; 1055*5ea7661aSPierre Jolivet if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1056*5ea7661aSPierre Jolivet if (a->matinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 10576947451fSStefano Zampini if (!a->cvec) { 10586947451fSStefano Zampini ierr = VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr); 10596947451fSStefano Zampini } 10606947451fSStefano Zampini a->vecinuse = col + 1; 10616947451fSStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 10626947451fSStefano Zampini ierr = MatDenseCUDAGetArrayRead(a->A,&a->ptrinuse);CHKERRQ(ierr); 10636947451fSStefano Zampini ierr = VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr); 10646947451fSStefano Zampini ierr = VecLockReadPush(a->cvec);CHKERRQ(ierr); 10656947451fSStefano Zampini *v = a->cvec; 10666947451fSStefano Zampini PetscFunctionReturn(0); 10676947451fSStefano Zampini } 10686947451fSStefano Zampini 10696947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecRead_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10706947451fSStefano Zampini { 10716947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10726947451fSStefano Zampini PetscErrorCode ierr; 10736947451fSStefano Zampini 10746947451fSStefano Zampini PetscFunctionBegin; 1075*5ea7661aSPierre Jolivet if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 10766947451fSStefano Zampini if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector"); 10776947451fSStefano Zampini a->vecinuse = 0; 10786947451fSStefano Zampini ierr = MatDenseCUDARestoreArrayRead(a->A,&a->ptrinuse);CHKERRQ(ierr); 10796947451fSStefano Zampini ierr = VecLockReadPop(a->cvec);CHKERRQ(ierr); 10806947451fSStefano Zampini ierr = VecCUDAResetArray(a->cvec);CHKERRQ(ierr); 10816947451fSStefano Zampini *v = NULL; 10826947451fSStefano Zampini PetscFunctionReturn(0); 10836947451fSStefano Zampini } 10846947451fSStefano Zampini 10856947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecWrite_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10866947451fSStefano Zampini { 10876947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10886947451fSStefano Zampini PetscErrorCode ierr; 10896947451fSStefano Zampini PetscInt lda; 10906947451fSStefano Zampini 10916947451fSStefano Zampini PetscFunctionBegin; 1092*5ea7661aSPierre Jolivet if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1093*5ea7661aSPierre Jolivet if (a->matinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 10946947451fSStefano Zampini if (!a->cvec) { 10956947451fSStefano Zampini ierr = VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr); 10966947451fSStefano Zampini } 10976947451fSStefano Zampini a->vecinuse = col + 1; 10986947451fSStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 10996947451fSStefano Zampini ierr = MatDenseCUDAGetArrayWrite(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 11006947451fSStefano Zampini ierr = VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr); 11016947451fSStefano Zampini *v = a->cvec; 11026947451fSStefano Zampini PetscFunctionReturn(0); 11036947451fSStefano Zampini } 11046947451fSStefano Zampini 11056947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 11066947451fSStefano Zampini { 11076947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 11086947451fSStefano Zampini PetscErrorCode ierr; 11096947451fSStefano Zampini 11106947451fSStefano Zampini PetscFunctionBegin; 1111*5ea7661aSPierre Jolivet if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 11126947451fSStefano Zampini if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector"); 11136947451fSStefano Zampini a->vecinuse = 0; 11146947451fSStefano Zampini ierr = MatDenseCUDARestoreArrayWrite(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 11156947451fSStefano Zampini ierr = VecCUDAResetArray(a->cvec);CHKERRQ(ierr); 11166947451fSStefano Zampini *v = NULL; 11176947451fSStefano Zampini PetscFunctionReturn(0); 11186947451fSStefano Zampini } 11196947451fSStefano Zampini 1120*5ea7661aSPierre Jolivet static PetscErrorCode MatDenseGetSubMatrix_MPIDenseCUDA(Mat A,PetscInt cbegin,PetscInt cend,Mat *v) 1121*5ea7661aSPierre Jolivet { 1122*5ea7661aSPierre Jolivet Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1123*5ea7661aSPierre Jolivet PetscInt lda; 1124*5ea7661aSPierre Jolivet PetscErrorCode ierr; 1125*5ea7661aSPierre Jolivet 1126*5ea7661aSPierre Jolivet PetscFunctionBegin; 1127*5ea7661aSPierre Jolivet if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1128*5ea7661aSPierre Jolivet if (a->matinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1129*5ea7661aSPierre Jolivet if (a->cmat && cend-cbegin != a->cmat->cmap->N) { 1130*5ea7661aSPierre Jolivet ierr = MatDestroy(&a->cmat);CHKERRQ(ierr); 1131*5ea7661aSPierre Jolivet } 1132*5ea7661aSPierre Jolivet ierr = MatDenseCUDAGetArray(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 1133*5ea7661aSPierre Jolivet ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 1134*5ea7661aSPierre Jolivet if (!a->cmat) { 1135*5ea7661aSPierre Jolivet ierr = MatCreateDenseCUDA(PetscObjectComm((PetscObject)A),A->rmap->n,PETSC_DECIDE,A->rmap->N,cend-cbegin,(PetscScalar*)a->ptrinuse + (size_t)cbegin * (size_t)lda,&a->cmat);CHKERRQ(ierr); 1136*5ea7661aSPierre Jolivet ierr = MatDenseSetLDA(a->cmat,lda);CHKERRQ(ierr); 1137*5ea7661aSPierre Jolivet } else { 1138*5ea7661aSPierre Jolivet ierr = MatDenseCUDAPlaceArray(a->cmat,a->ptrinuse + (size_t)cbegin * (size_t)lda);CHKERRQ(ierr); 1139*5ea7661aSPierre Jolivet } 1140*5ea7661aSPierre Jolivet a->matinuse = cbegin + 1; 1141*5ea7661aSPierre Jolivet *v = a->cmat; 1142*5ea7661aSPierre Jolivet PetscFunctionReturn(0); 1143*5ea7661aSPierre Jolivet } 1144*5ea7661aSPierre Jolivet 1145*5ea7661aSPierre Jolivet static PetscErrorCode MatDenseRestoreSubMatrix_MPIDenseCUDA(Mat A,Mat *v) 1146*5ea7661aSPierre Jolivet { 1147*5ea7661aSPierre Jolivet Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1148*5ea7661aSPierre Jolivet PetscErrorCode ierr; 1149*5ea7661aSPierre Jolivet 1150*5ea7661aSPierre Jolivet PetscFunctionBegin; 1151*5ea7661aSPierre Jolivet if (!a->matinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetSubMatrix() first"); 1152*5ea7661aSPierre Jolivet if (!a->cmat) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column matrix"); 1153*5ea7661aSPierre Jolivet a->matinuse = 0; 1154*5ea7661aSPierre Jolivet ierr = MatDenseCUDARestoreArray(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 1155*5ea7661aSPierre Jolivet ierr = MatDenseCUDAResetArray(a->cmat);CHKERRQ(ierr); 1156*5ea7661aSPierre Jolivet *v = NULL; 1157*5ea7661aSPierre Jolivet PetscFunctionReturn(0); 1158*5ea7661aSPierre Jolivet } 1159*5ea7661aSPierre Jolivet 1160637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAPlaceArray_MPIDenseCUDA(Mat A, const PetscScalar *a) 1161637a0070SStefano Zampini { 1162637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1163637a0070SStefano Zampini PetscErrorCode ierr; 1164637a0070SStefano Zampini 1165637a0070SStefano Zampini PetscFunctionBegin; 1166*5ea7661aSPierre Jolivet if (l->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1167*5ea7661aSPierre Jolivet if (l->matinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1168637a0070SStefano Zampini ierr = MatDenseCUDAPlaceArray(l->A,a);CHKERRQ(ierr); 1169637a0070SStefano Zampini PetscFunctionReturn(0); 1170637a0070SStefano Zampini } 1171637a0070SStefano Zampini 1172637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAResetArray_MPIDenseCUDA(Mat A) 1173637a0070SStefano Zampini { 1174637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1175637a0070SStefano Zampini PetscErrorCode ierr; 1176637a0070SStefano Zampini 1177637a0070SStefano Zampini PetscFunctionBegin; 1178*5ea7661aSPierre Jolivet if (l->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1179*5ea7661aSPierre Jolivet if (l->matinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1180637a0070SStefano Zampini ierr = MatDenseCUDAResetArray(l->A);CHKERRQ(ierr); 1181637a0070SStefano Zampini PetscFunctionReturn(0); 1182637a0070SStefano Zampini } 1183637a0070SStefano Zampini 1184d5ea218eSStefano Zampini static PetscErrorCode MatDenseCUDAReplaceArray_MPIDenseCUDA(Mat A, const PetscScalar *a) 1185d5ea218eSStefano Zampini { 1186d5ea218eSStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1187d5ea218eSStefano Zampini PetscErrorCode ierr; 1188d5ea218eSStefano Zampini 1189d5ea218eSStefano Zampini PetscFunctionBegin; 1190*5ea7661aSPierre Jolivet if (l->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1191*5ea7661aSPierre Jolivet if (l->matinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1192d5ea218eSStefano Zampini ierr = MatDenseCUDAReplaceArray(l->A,a);CHKERRQ(ierr); 1193d5ea218eSStefano Zampini PetscFunctionReturn(0); 1194d5ea218eSStefano Zampini } 1195d5ea218eSStefano Zampini 1196637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArrayWrite_MPIDenseCUDA(Mat A, PetscScalar **a) 1197637a0070SStefano Zampini { 1198637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1199637a0070SStefano Zampini PetscErrorCode ierr; 1200637a0070SStefano Zampini 1201637a0070SStefano Zampini PetscFunctionBegin; 1202637a0070SStefano Zampini ierr = MatDenseCUDAGetArrayWrite(l->A,a);CHKERRQ(ierr); 1203637a0070SStefano Zampini PetscFunctionReturn(0); 1204637a0070SStefano Zampini } 1205637a0070SStefano Zampini 1206637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArrayWrite_MPIDenseCUDA(Mat A, PetscScalar **a) 1207637a0070SStefano Zampini { 1208637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1209637a0070SStefano Zampini PetscErrorCode ierr; 1210637a0070SStefano Zampini 1211637a0070SStefano Zampini PetscFunctionBegin; 1212637a0070SStefano Zampini ierr = MatDenseCUDARestoreArrayWrite(l->A,a);CHKERRQ(ierr); 1213637a0070SStefano Zampini PetscFunctionReturn(0); 1214637a0070SStefano Zampini } 1215637a0070SStefano Zampini 1216637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArrayRead_MPIDenseCUDA(Mat A, const PetscScalar **a) 1217637a0070SStefano Zampini { 1218637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1219637a0070SStefano Zampini PetscErrorCode ierr; 1220637a0070SStefano Zampini 1221637a0070SStefano Zampini PetscFunctionBegin; 1222637a0070SStefano Zampini ierr = MatDenseCUDAGetArrayRead(l->A,a);CHKERRQ(ierr); 1223637a0070SStefano Zampini PetscFunctionReturn(0); 1224637a0070SStefano Zampini } 1225637a0070SStefano Zampini 1226637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArrayRead_MPIDenseCUDA(Mat A, const PetscScalar **a) 1227637a0070SStefano Zampini { 1228637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1229637a0070SStefano Zampini PetscErrorCode ierr; 1230637a0070SStefano Zampini 1231637a0070SStefano Zampini PetscFunctionBegin; 1232637a0070SStefano Zampini ierr = MatDenseCUDARestoreArrayRead(l->A,a);CHKERRQ(ierr); 1233637a0070SStefano Zampini PetscFunctionReturn(0); 1234637a0070SStefano Zampini } 1235637a0070SStefano Zampini 1236637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArray_MPIDenseCUDA(Mat A, PetscScalar **a) 1237637a0070SStefano Zampini { 1238637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1239637a0070SStefano Zampini PetscErrorCode ierr; 1240637a0070SStefano Zampini 1241637a0070SStefano Zampini PetscFunctionBegin; 1242637a0070SStefano Zampini ierr = MatDenseCUDAGetArray(l->A,a);CHKERRQ(ierr); 1243637a0070SStefano Zampini PetscFunctionReturn(0); 1244637a0070SStefano Zampini } 1245637a0070SStefano Zampini 1246637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArray_MPIDenseCUDA(Mat A, PetscScalar **a) 1247637a0070SStefano Zampini { 1248637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1249637a0070SStefano Zampini PetscErrorCode ierr; 1250637a0070SStefano Zampini 1251637a0070SStefano Zampini PetscFunctionBegin; 1252637a0070SStefano Zampini ierr = MatDenseCUDARestoreArray(l->A,a);CHKERRQ(ierr); 1253637a0070SStefano Zampini PetscFunctionReturn(0); 1254637a0070SStefano Zampini } 1255637a0070SStefano Zampini 12566947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecWrite_MPIDense(Mat,PetscInt,Vec*); 12576947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecRead_MPIDense(Mat,PetscInt,Vec*); 12586947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVec_MPIDense(Mat,PetscInt,Vec*); 1259*5ea7661aSPierre Jolivet static PetscErrorCode MatDenseGetSubMatrix_MPIDense(Mat,PetscInt,PetscInt,Mat*); 12606947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDense(Mat,PetscInt,Vec*); 12616947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecRead_MPIDense(Mat,PetscInt,Vec*); 12626947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVec_MPIDense(Mat,PetscInt,Vec*); 1263*5ea7661aSPierre Jolivet static PetscErrorCode MatDenseRestoreSubMatrix_MPIDense(Mat,Mat*); 12646947451fSStefano Zampini 1265637a0070SStefano Zampini static PetscErrorCode MatBindToCPU_MPIDenseCUDA(Mat mat,PetscBool bind) 1266637a0070SStefano Zampini { 1267637a0070SStefano Zampini Mat_MPIDense *d = (Mat_MPIDense*)mat->data; 1268637a0070SStefano Zampini PetscErrorCode ierr; 1269637a0070SStefano Zampini 1270637a0070SStefano Zampini PetscFunctionBegin; 1271*5ea7661aSPierre Jolivet if (d->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1272*5ea7661aSPierre Jolivet if (d->matinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1273637a0070SStefano Zampini if (d->A) { 1274637a0070SStefano Zampini ierr = MatBindToCPU(d->A,bind);CHKERRQ(ierr); 1275637a0070SStefano Zampini } 1276637a0070SStefano Zampini mat->boundtocpu = bind; 12776947451fSStefano Zampini if (!bind) { 12786947451fSStefano Zampini PetscBool iscuda; 12796947451fSStefano Zampini 12806947451fSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)d->cvec,VECMPICUDA,&iscuda);CHKERRQ(ierr); 12816947451fSStefano Zampini if (!iscuda) { 12826947451fSStefano Zampini ierr = VecDestroy(&d->cvec);CHKERRQ(ierr); 1283*5ea7661aSPierre Jolivet ierr = MatDestroy(&d->cmat);CHKERRQ(ierr); 12846947451fSStefano Zampini } 12856947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDenseCUDA);CHKERRQ(ierr); 12866947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDenseCUDA);CHKERRQ(ierr); 12876947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDenseCUDA);CHKERRQ(ierr); 12886947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDenseCUDA);CHKERRQ(ierr); 12896947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDenseCUDA);CHKERRQ(ierr); 12906947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDenseCUDA);CHKERRQ(ierr); 1291*5ea7661aSPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetSubMatrix_C",MatDenseGetSubMatrix_MPIDenseCUDA);CHKERRQ(ierr); 1292*5ea7661aSPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreSubMatrix_C",MatDenseRestoreSubMatrix_MPIDenseCUDA);CHKERRQ(ierr); 12936947451fSStefano Zampini } else { 12946947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDense);CHKERRQ(ierr); 12956947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDense);CHKERRQ(ierr); 12966947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDense);CHKERRQ(ierr); 12976947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDense);CHKERRQ(ierr); 12986947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDense);CHKERRQ(ierr); 12996947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDense);CHKERRQ(ierr); 1300*5ea7661aSPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetSubMatrix_C",MatDenseGetSubMatrix_MPIDense);CHKERRQ(ierr); 1301*5ea7661aSPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreSubMatrix_C",MatDenseRestoreSubMatrix_MPIDense);CHKERRQ(ierr); 13026947451fSStefano Zampini } 1303637a0070SStefano Zampini PetscFunctionReturn(0); 1304637a0070SStefano Zampini } 1305637a0070SStefano Zampini 1306637a0070SStefano Zampini PetscErrorCode MatMPIDenseCUDASetPreallocation(Mat A, PetscScalar *d_data) 1307637a0070SStefano Zampini { 1308637a0070SStefano Zampini Mat_MPIDense *d = (Mat_MPIDense*)A->data; 1309637a0070SStefano Zampini PetscErrorCode ierr; 1310637a0070SStefano Zampini PetscBool iscuda; 1311637a0070SStefano Zampini 1312637a0070SStefano Zampini PetscFunctionBegin; 1313d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 1314637a0070SStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIDENSECUDA,&iscuda);CHKERRQ(ierr); 1315637a0070SStefano Zampini if (!iscuda) PetscFunctionReturn(0); 1316637a0070SStefano Zampini ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr); 1317637a0070SStefano Zampini ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr); 1318637a0070SStefano Zampini if (!d->A) { 1319637a0070SStefano Zampini ierr = MatCreate(PETSC_COMM_SELF,&d->A);CHKERRQ(ierr); 1320637a0070SStefano Zampini ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)d->A);CHKERRQ(ierr); 1321637a0070SStefano Zampini ierr = MatSetSizes(d->A,A->rmap->n,A->cmap->N,A->rmap->n,A->cmap->N);CHKERRQ(ierr); 1322637a0070SStefano Zampini } 1323637a0070SStefano Zampini ierr = MatSetType(d->A,MATSEQDENSECUDA);CHKERRQ(ierr); 1324637a0070SStefano Zampini ierr = MatSeqDenseCUDASetPreallocation(d->A,d_data);CHKERRQ(ierr); 1325637a0070SStefano Zampini A->preallocated = PETSC_TRUE; 1326637a0070SStefano Zampini PetscFunctionReturn(0); 1327637a0070SStefano Zampini } 1328637a0070SStefano Zampini #endif 1329637a0070SStefano Zampini 133073a71a0fSBarry Smith static PetscErrorCode MatSetRandom_MPIDense(Mat x,PetscRandom rctx) 133173a71a0fSBarry Smith { 133273a71a0fSBarry Smith Mat_MPIDense *d = (Mat_MPIDense*)x->data; 133373a71a0fSBarry Smith PetscErrorCode ierr; 133473a71a0fSBarry Smith 133573a71a0fSBarry Smith PetscFunctionBegin; 1336637a0070SStefano Zampini ierr = MatSetRandom(d->A,rctx);CHKERRQ(ierr); 133773a71a0fSBarry Smith PetscFunctionReturn(0); 133873a71a0fSBarry Smith } 133973a71a0fSBarry Smith 13403b49f96aSBarry Smith static PetscErrorCode MatMissingDiagonal_MPIDense(Mat A,PetscBool *missing,PetscInt *d) 13413b49f96aSBarry Smith { 13423b49f96aSBarry Smith PetscFunctionBegin; 13433b49f96aSBarry Smith *missing = PETSC_FALSE; 13443b49f96aSBarry Smith PetscFunctionReturn(0); 13453b49f96aSBarry Smith } 13463b49f96aSBarry Smith 13474222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat,Mat,PetscReal,Mat); 1348cc48ffa7SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat,Mat,Mat); 13496718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat,Mat,Mat); 13506718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat,Mat,PetscReal,Mat); 13516718818eSStefano Zampini static PetscErrorCode MatEqual_MPIDense(Mat,Mat,PetscBool*); 13526718818eSStefano Zampini static PetscErrorCode MatLoad_MPIDense(Mat,PetscViewer); 1353cc48ffa7SToby Isaac 13548965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/ 135509dc0095SBarry Smith static struct _MatOps MatOps_Values = { MatSetValues_MPIDense, 135609dc0095SBarry Smith MatGetRow_MPIDense, 135709dc0095SBarry Smith MatRestoreRow_MPIDense, 135809dc0095SBarry Smith MatMult_MPIDense, 135997304618SKris Buschelman /* 4*/ MatMultAdd_MPIDense, 13607c922b88SBarry Smith MatMultTranspose_MPIDense, 13617c922b88SBarry Smith MatMultTransposeAdd_MPIDense, 13628965ea79SLois Curfman McInnes 0, 136309dc0095SBarry Smith 0, 136409dc0095SBarry Smith 0, 136597304618SKris Buschelman /* 10*/ 0, 136609dc0095SBarry Smith 0, 136709dc0095SBarry Smith 0, 136809dc0095SBarry Smith 0, 136909dc0095SBarry Smith MatTranspose_MPIDense, 137097304618SKris Buschelman /* 15*/ MatGetInfo_MPIDense, 13716e4ee0c6SHong Zhang MatEqual_MPIDense, 137209dc0095SBarry Smith MatGetDiagonal_MPIDense, 13735b2fa520SLois Curfman McInnes MatDiagonalScale_MPIDense, 137409dc0095SBarry Smith MatNorm_MPIDense, 137597304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPIDense, 137609dc0095SBarry Smith MatAssemblyEnd_MPIDense, 137709dc0095SBarry Smith MatSetOption_MPIDense, 137809dc0095SBarry Smith MatZeroEntries_MPIDense, 1379d519adbfSMatthew Knepley /* 24*/ MatZeroRows_MPIDense, 1380919b68f7SBarry Smith 0, 138101b82886SBarry Smith 0, 138201b82886SBarry Smith 0, 138301b82886SBarry Smith 0, 13844994cf47SJed Brown /* 29*/ MatSetUp_MPIDense, 1385273d9f13SBarry Smith 0, 138609dc0095SBarry Smith 0, 1387c56a70eeSBarry Smith MatGetDiagonalBlock_MPIDense, 13888c778c55SBarry Smith 0, 1389d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPIDense, 139009dc0095SBarry Smith 0, 139109dc0095SBarry Smith 0, 139209dc0095SBarry Smith 0, 139309dc0095SBarry Smith 0, 1394d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPIDense, 13957dae84e0SHong Zhang MatCreateSubMatrices_MPIDense, 139609dc0095SBarry Smith 0, 139709dc0095SBarry Smith MatGetValues_MPIDense, 139809dc0095SBarry Smith 0, 1399d519adbfSMatthew Knepley /* 44*/ 0, 140009dc0095SBarry Smith MatScale_MPIDense, 14017d68702bSBarry Smith MatShift_Basic, 140209dc0095SBarry Smith 0, 140309dc0095SBarry Smith 0, 140473a71a0fSBarry Smith /* 49*/ MatSetRandom_MPIDense, 140509dc0095SBarry Smith 0, 140609dc0095SBarry Smith 0, 140709dc0095SBarry Smith 0, 140809dc0095SBarry Smith 0, 1409d519adbfSMatthew Knepley /* 54*/ 0, 141009dc0095SBarry Smith 0, 141109dc0095SBarry Smith 0, 141209dc0095SBarry Smith 0, 141309dc0095SBarry Smith 0, 14147dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPIDense, 1415b9b97703SBarry Smith MatDestroy_MPIDense, 1416b9b97703SBarry Smith MatView_MPIDense, 1417357abbc8SBarry Smith 0, 141897304618SKris Buschelman 0, 1419d519adbfSMatthew Knepley /* 64*/ 0, 142097304618SKris Buschelman 0, 142197304618SKris Buschelman 0, 142297304618SKris Buschelman 0, 142397304618SKris Buschelman 0, 1424d519adbfSMatthew Knepley /* 69*/ 0, 142597304618SKris Buschelman 0, 142697304618SKris Buschelman 0, 142797304618SKris Buschelman 0, 142897304618SKris Buschelman 0, 1429d519adbfSMatthew Knepley /* 74*/ 0, 143097304618SKris Buschelman 0, 143197304618SKris Buschelman 0, 143297304618SKris Buschelman 0, 143397304618SKris Buschelman 0, 1434d519adbfSMatthew Knepley /* 79*/ 0, 143597304618SKris Buschelman 0, 143697304618SKris Buschelman 0, 143797304618SKris Buschelman 0, 14385bba2384SShri Abhyankar /* 83*/ MatLoad_MPIDense, 1439865e5f61SKris Buschelman 0, 1440865e5f61SKris Buschelman 0, 1441865e5f61SKris Buschelman 0, 1442865e5f61SKris Buschelman 0, 1443865e5f61SKris Buschelman 0, 14444222ddf1SHong Zhang /* 89*/ 0, 14454222ddf1SHong Zhang 0, 14466718818eSStefano Zampini 0, 14472fbe02b9SBarry Smith 0, 1448ba337c44SJed Brown 0, 1449d519adbfSMatthew Knepley /* 94*/ 0, 14504222ddf1SHong Zhang 0, 14516718818eSStefano Zampini MatMatTransposeMultSymbolic_MPIDense_MPIDense, 1452cc48ffa7SToby Isaac MatMatTransposeMultNumeric_MPIDense_MPIDense, 1453ba337c44SJed Brown 0, 14544222ddf1SHong Zhang /* 99*/ MatProductSetFromOptions_MPIDense, 1455ba337c44SJed Brown 0, 1456ba337c44SJed Brown 0, 1457ba337c44SJed Brown MatConjugate_MPIDense, 1458ba337c44SJed Brown 0, 1459ba337c44SJed Brown /*104*/ 0, 1460ba337c44SJed Brown MatRealPart_MPIDense, 1461ba337c44SJed Brown MatImaginaryPart_MPIDense, 146286d161a7SShri Abhyankar 0, 146386d161a7SShri Abhyankar 0, 146486d161a7SShri Abhyankar /*109*/ 0, 146586d161a7SShri Abhyankar 0, 146686d161a7SShri Abhyankar 0, 146749a6ff4bSBarry Smith MatGetColumnVector_MPIDense, 14683b49f96aSBarry Smith MatMissingDiagonal_MPIDense, 146986d161a7SShri Abhyankar /*114*/ 0, 147086d161a7SShri Abhyankar 0, 147186d161a7SShri Abhyankar 0, 147286d161a7SShri Abhyankar 0, 147386d161a7SShri Abhyankar 0, 147486d161a7SShri Abhyankar /*119*/ 0, 147586d161a7SShri Abhyankar 0, 147686d161a7SShri Abhyankar 0, 14770716a85fSBarry Smith 0, 14780716a85fSBarry Smith 0, 14790716a85fSBarry Smith /*124*/ 0, 14803964eb88SJed Brown MatGetColumnNorms_MPIDense, 14813964eb88SJed Brown 0, 14823964eb88SJed Brown 0, 14833964eb88SJed Brown 0, 14843964eb88SJed Brown /*129*/ 0, 14854222ddf1SHong Zhang 0, 14866718818eSStefano Zampini MatTransposeMatMultSymbolic_MPIDense_MPIDense, 1487cb20be35SHong Zhang MatTransposeMatMultNumeric_MPIDense_MPIDense, 14883964eb88SJed Brown 0, 14893964eb88SJed Brown /*134*/ 0, 14903964eb88SJed Brown 0, 14913964eb88SJed Brown 0, 14923964eb88SJed Brown 0, 14933964eb88SJed Brown 0, 14943964eb88SJed Brown /*139*/ 0, 1495f9426fe0SMark Adams 0, 149694e2cb23SJakub Kruzik 0, 149794e2cb23SJakub Kruzik 0, 149894e2cb23SJakub Kruzik 0, 14994222ddf1SHong Zhang MatCreateMPIMatConcatenateSeqMat_MPIDense, 15004222ddf1SHong Zhang /*145*/ 0, 15014222ddf1SHong Zhang 0, 15024222ddf1SHong Zhang 0 1503ba337c44SJed Brown }; 15048965ea79SLois Curfman McInnes 15057087cfbeSBarry Smith PetscErrorCode MatMPIDenseSetPreallocation_MPIDense(Mat mat,PetscScalar *data) 1506a23d5eceSKris Buschelman { 1507637a0070SStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)mat->data; 1508637a0070SStefano Zampini PetscBool iscuda; 1509dfbe8321SBarry Smith PetscErrorCode ierr; 1510a23d5eceSKris Buschelman 1511a23d5eceSKris Buschelman PetscFunctionBegin; 151234ef9618SShri Abhyankar ierr = PetscLayoutSetUp(mat->rmap);CHKERRQ(ierr); 151334ef9618SShri Abhyankar ierr = PetscLayoutSetUp(mat->cmap);CHKERRQ(ierr); 1514637a0070SStefano Zampini if (!a->A) { 1515f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&a->A);CHKERRQ(ierr); 15163bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 1517637a0070SStefano Zampini ierr = MatSetSizes(a->A,mat->rmap->n,mat->cmap->N,mat->rmap->n,mat->cmap->N);CHKERRQ(ierr); 1518637a0070SStefano Zampini } 1519637a0070SStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)mat,MATMPIDENSECUDA,&iscuda);CHKERRQ(ierr); 1520637a0070SStefano Zampini ierr = MatSetType(a->A,iscuda ? MATSEQDENSECUDA : MATSEQDENSE);CHKERRQ(ierr); 1521637a0070SStefano Zampini ierr = MatSeqDenseSetPreallocation(a->A,data);CHKERRQ(ierr); 1522637a0070SStefano Zampini mat->preallocated = PETSC_TRUE; 1523a23d5eceSKris Buschelman PetscFunctionReturn(0); 1524a23d5eceSKris Buschelman } 1525a23d5eceSKris Buschelman 152665b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 1527cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIDense_Elemental(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 15288baccfbdSHong Zhang { 15298ea901baSHong Zhang Mat mat_elemental; 15308ea901baSHong Zhang PetscErrorCode ierr; 153132d7a744SHong Zhang PetscScalar *v; 153232d7a744SHong Zhang PetscInt m=A->rmap->n,N=A->cmap->N,rstart=A->rmap->rstart,i,*rows,*cols; 15338ea901baSHong Zhang 15348baccfbdSHong Zhang PetscFunctionBegin; 1535378336b6SHong Zhang if (reuse == MAT_REUSE_MATRIX) { 1536378336b6SHong Zhang mat_elemental = *newmat; 1537378336b6SHong Zhang ierr = MatZeroEntries(*newmat);CHKERRQ(ierr); 1538378336b6SHong Zhang } else { 1539378336b6SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental);CHKERRQ(ierr); 1540378336b6SHong Zhang ierr = MatSetSizes(mat_elemental,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 1541378336b6SHong Zhang ierr = MatSetType(mat_elemental,MATELEMENTAL);CHKERRQ(ierr); 1542378336b6SHong Zhang ierr = MatSetUp(mat_elemental);CHKERRQ(ierr); 154332d7a744SHong Zhang ierr = MatSetOption(mat_elemental,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 1544378336b6SHong Zhang } 1545378336b6SHong Zhang 154632d7a744SHong Zhang ierr = PetscMalloc2(m,&rows,N,&cols);CHKERRQ(ierr); 154732d7a744SHong Zhang for (i=0; i<N; i++) cols[i] = i; 154832d7a744SHong Zhang for (i=0; i<m; i++) rows[i] = rstart + i; 15498ea901baSHong Zhang 1550637a0070SStefano Zampini /* PETSc-Elemental interface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */ 155132d7a744SHong Zhang ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr); 155232d7a744SHong Zhang ierr = MatSetValues(mat_elemental,m,rows,N,cols,v,ADD_VALUES);CHKERRQ(ierr); 15538ea901baSHong Zhang ierr = MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 15548ea901baSHong Zhang ierr = MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 155532d7a744SHong Zhang ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr); 155632d7a744SHong Zhang ierr = PetscFree2(rows,cols);CHKERRQ(ierr); 15578ea901baSHong Zhang 1558511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 155928be2f97SBarry Smith ierr = MatHeaderReplace(A,&mat_elemental);CHKERRQ(ierr); 15608ea901baSHong Zhang } else { 15618ea901baSHong Zhang *newmat = mat_elemental; 15628ea901baSHong Zhang } 15638baccfbdSHong Zhang PetscFunctionReturn(0); 15648baccfbdSHong Zhang } 156565b80a83SHong Zhang #endif 15668baccfbdSHong Zhang 1567af53bab2SHong Zhang static PetscErrorCode MatDenseGetColumn_MPIDense(Mat A,PetscInt col,PetscScalar **vals) 156886aefd0dSHong Zhang { 156986aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 157086aefd0dSHong Zhang PetscErrorCode ierr; 157186aefd0dSHong Zhang 157286aefd0dSHong Zhang PetscFunctionBegin; 157386aefd0dSHong Zhang ierr = MatDenseGetColumn(mat->A,col,vals);CHKERRQ(ierr); 157486aefd0dSHong Zhang PetscFunctionReturn(0); 157586aefd0dSHong Zhang } 157686aefd0dSHong Zhang 1577af53bab2SHong Zhang static PetscErrorCode MatDenseRestoreColumn_MPIDense(Mat A,PetscScalar **vals) 157886aefd0dSHong Zhang { 157986aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 158086aefd0dSHong Zhang PetscErrorCode ierr; 158186aefd0dSHong Zhang 158286aefd0dSHong Zhang PetscFunctionBegin; 158386aefd0dSHong Zhang ierr = MatDenseRestoreColumn(mat->A,vals);CHKERRQ(ierr); 158486aefd0dSHong Zhang PetscFunctionReturn(0); 158586aefd0dSHong Zhang } 158686aefd0dSHong Zhang 158794e2cb23SJakub Kruzik PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIDense(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 158894e2cb23SJakub Kruzik { 158994e2cb23SJakub Kruzik PetscErrorCode ierr; 159094e2cb23SJakub Kruzik Mat_MPIDense *mat; 159194e2cb23SJakub Kruzik PetscInt m,nloc,N; 159294e2cb23SJakub Kruzik 159394e2cb23SJakub Kruzik PetscFunctionBegin; 159494e2cb23SJakub Kruzik ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr); 159594e2cb23SJakub Kruzik ierr = MatGetLocalSize(inmat,NULL,&nloc);CHKERRQ(ierr); 159694e2cb23SJakub Kruzik if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 159794e2cb23SJakub Kruzik PetscInt sum; 159894e2cb23SJakub Kruzik 159994e2cb23SJakub Kruzik if (n == PETSC_DECIDE) { 160094e2cb23SJakub Kruzik ierr = PetscSplitOwnership(comm,&n,&N);CHKERRQ(ierr); 160194e2cb23SJakub Kruzik } 160294e2cb23SJakub Kruzik /* Check sum(n) = N */ 160394e2cb23SJakub Kruzik ierr = MPIU_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 160494e2cb23SJakub Kruzik if (sum != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns %D != global columns %D",sum,N); 160594e2cb23SJakub Kruzik 160694e2cb23SJakub Kruzik ierr = MatCreateDense(comm,m,n,PETSC_DETERMINE,N,NULL,outmat);CHKERRQ(ierr); 160794e2cb23SJakub Kruzik } 160894e2cb23SJakub Kruzik 160994e2cb23SJakub Kruzik /* numeric phase */ 161094e2cb23SJakub Kruzik mat = (Mat_MPIDense*)(*outmat)->data; 161194e2cb23SJakub Kruzik ierr = MatCopy(inmat,mat->A,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 161294e2cb23SJakub Kruzik ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 161394e2cb23SJakub Kruzik ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 161494e2cb23SJakub Kruzik PetscFunctionReturn(0); 161594e2cb23SJakub Kruzik } 161694e2cb23SJakub Kruzik 1617637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1618637a0070SStefano Zampini PetscErrorCode MatConvert_MPIDenseCUDA_MPIDense(Mat M,MatType type,MatReuse reuse,Mat *newmat) 1619637a0070SStefano Zampini { 1620637a0070SStefano Zampini Mat B; 1621637a0070SStefano Zampini Mat_MPIDense *m; 1622637a0070SStefano Zampini PetscErrorCode ierr; 1623637a0070SStefano Zampini 1624637a0070SStefano Zampini PetscFunctionBegin; 1625637a0070SStefano Zampini if (reuse == MAT_INITIAL_MATRIX) { 1626637a0070SStefano Zampini ierr = MatDuplicate(M,MAT_COPY_VALUES,newmat);CHKERRQ(ierr); 1627637a0070SStefano Zampini } else if (reuse == MAT_REUSE_MATRIX) { 1628637a0070SStefano Zampini ierr = MatCopy(M,*newmat,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 1629637a0070SStefano Zampini } 1630637a0070SStefano Zampini 1631637a0070SStefano Zampini B = *newmat; 1632637a0070SStefano Zampini ierr = MatBindToCPU_MPIDenseCUDA(B,PETSC_TRUE);CHKERRQ(ierr); 1633637a0070SStefano Zampini ierr = PetscFree(B->defaultvectype);CHKERRQ(ierr); 1634637a0070SStefano Zampini ierr = PetscStrallocpy(VECSTANDARD,&B->defaultvectype);CHKERRQ(ierr); 1635637a0070SStefano Zampini ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIDENSE);CHKERRQ(ierr); 1636637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpidensecuda_mpidense_C",NULL);CHKERRQ(ierr); 1637637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaij_mpidensecuda_C",NULL);CHKERRQ(ierr); 16386718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaijcusparse_mpidensecuda_C",NULL);CHKERRQ(ierr); 1639637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaij_C",NULL);CHKERRQ(ierr); 16406718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaijcusparse_C",NULL);CHKERRQ(ierr); 1641637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArray_C",NULL);CHKERRQ(ierr); 1642637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayRead_C",NULL);CHKERRQ(ierr); 1643637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayWrite_C",NULL);CHKERRQ(ierr); 1644637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArray_C",NULL);CHKERRQ(ierr); 1645637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayRead_C",NULL);CHKERRQ(ierr); 1646637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayWrite_C",NULL);CHKERRQ(ierr); 1647637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAPlaceArray_C",NULL);CHKERRQ(ierr); 1648637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAResetArray_C",NULL);CHKERRQ(ierr); 1649d5ea218eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAReplaceArray_C",NULL);CHKERRQ(ierr); 1650637a0070SStefano Zampini m = (Mat_MPIDense*)(B)->data; 1651637a0070SStefano Zampini if (m->A) { 1652637a0070SStefano Zampini ierr = MatConvert(m->A,MATSEQDENSE,MAT_INPLACE_MATRIX,&m->A);CHKERRQ(ierr); 1653637a0070SStefano Zampini ierr = MatSetUpMultiply_MPIDense(B);CHKERRQ(ierr); 1654637a0070SStefano Zampini } 1655637a0070SStefano Zampini B->ops->bindtocpu = NULL; 1656637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_CPU; 1657637a0070SStefano Zampini PetscFunctionReturn(0); 1658637a0070SStefano Zampini } 1659637a0070SStefano Zampini 1660637a0070SStefano Zampini PetscErrorCode MatConvert_MPIDense_MPIDenseCUDA(Mat M,MatType type,MatReuse reuse,Mat *newmat) 1661637a0070SStefano Zampini { 1662637a0070SStefano Zampini Mat B; 1663637a0070SStefano Zampini Mat_MPIDense *m; 1664637a0070SStefano Zampini PetscErrorCode ierr; 1665637a0070SStefano Zampini 1666637a0070SStefano Zampini PetscFunctionBegin; 1667637a0070SStefano Zampini if (reuse == MAT_INITIAL_MATRIX) { 1668637a0070SStefano Zampini ierr = MatDuplicate(M,MAT_COPY_VALUES,newmat);CHKERRQ(ierr); 1669637a0070SStefano Zampini } else if (reuse == MAT_REUSE_MATRIX) { 1670637a0070SStefano Zampini ierr = MatCopy(M,*newmat,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 1671637a0070SStefano Zampini } 1672637a0070SStefano Zampini 1673637a0070SStefano Zampini B = *newmat; 1674637a0070SStefano Zampini ierr = PetscFree(B->defaultvectype);CHKERRQ(ierr); 1675637a0070SStefano Zampini ierr = PetscStrallocpy(VECCUDA,&B->defaultvectype);CHKERRQ(ierr); 1676637a0070SStefano Zampini ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIDENSECUDA);CHKERRQ(ierr); 1677637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpidensecuda_mpidense_C", MatConvert_MPIDenseCUDA_MPIDense);CHKERRQ(ierr); 1678637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaij_mpidensecuda_C", MatProductSetFromOptions_MPIAIJ_MPIDense);CHKERRQ(ierr); 16796718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaijcusparse_mpidensecuda_C",MatProductSetFromOptions_MPIAIJ_MPIDense);CHKERRQ(ierr); 1680637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaij_C", MatProductSetFromOptions_MPIDense_MPIAIJ);CHKERRQ(ierr); 16816718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaijcusparse_C",MatProductSetFromOptions_MPIDense_MPIAIJ);CHKERRQ(ierr); 1682637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArray_C", MatDenseCUDAGetArray_MPIDenseCUDA);CHKERRQ(ierr); 1683637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayRead_C", MatDenseCUDAGetArrayRead_MPIDenseCUDA);CHKERRQ(ierr); 1684637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayWrite_C", MatDenseCUDAGetArrayWrite_MPIDenseCUDA);CHKERRQ(ierr); 1685637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArray_C", MatDenseCUDARestoreArray_MPIDenseCUDA);CHKERRQ(ierr); 1686637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayRead_C", MatDenseCUDARestoreArrayRead_MPIDenseCUDA);CHKERRQ(ierr); 1687637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayWrite_C", MatDenseCUDARestoreArrayWrite_MPIDenseCUDA);CHKERRQ(ierr); 1688637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAPlaceArray_C", MatDenseCUDAPlaceArray_MPIDenseCUDA);CHKERRQ(ierr); 1689637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAResetArray_C", MatDenseCUDAResetArray_MPIDenseCUDA);CHKERRQ(ierr); 1690d5ea218eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAReplaceArray_C", MatDenseCUDAReplaceArray_MPIDenseCUDA);CHKERRQ(ierr); 1691637a0070SStefano Zampini m = (Mat_MPIDense*)(B)->data; 1692637a0070SStefano Zampini if (m->A) { 1693637a0070SStefano Zampini ierr = MatConvert(m->A,MATSEQDENSECUDA,MAT_INPLACE_MATRIX,&m->A);CHKERRQ(ierr); 1694637a0070SStefano Zampini ierr = MatSetUpMultiply_MPIDense(B);CHKERRQ(ierr); 1695637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_BOTH; 1696637a0070SStefano Zampini } else { 1697637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_UNALLOCATED; 1698637a0070SStefano Zampini } 1699637a0070SStefano Zampini ierr = MatBindToCPU_MPIDenseCUDA(B,PETSC_FALSE);CHKERRQ(ierr); 1700637a0070SStefano Zampini 1701637a0070SStefano Zampini B->ops->bindtocpu = MatBindToCPU_MPIDenseCUDA; 1702637a0070SStefano Zampini PetscFunctionReturn(0); 1703637a0070SStefano Zampini } 1704637a0070SStefano Zampini #endif 1705637a0070SStefano Zampini 17066947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVec_MPIDense(Mat A,PetscInt col,Vec *v) 17076947451fSStefano Zampini { 17086947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17096947451fSStefano Zampini PetscErrorCode ierr; 17106947451fSStefano Zampini PetscInt lda; 17116947451fSStefano Zampini 17126947451fSStefano Zampini PetscFunctionBegin; 1713*5ea7661aSPierre Jolivet if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1714*5ea7661aSPierre Jolivet if (a->matinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 17156947451fSStefano Zampini if (!a->cvec) { 17166947451fSStefano Zampini ierr = VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr); 17176947451fSStefano Zampini } 17186947451fSStefano Zampini a->vecinuse = col + 1; 17196947451fSStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 17206947451fSStefano Zampini ierr = MatDenseGetArray(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 17216947451fSStefano Zampini ierr = VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr); 17226947451fSStefano Zampini *v = a->cvec; 17236947451fSStefano Zampini PetscFunctionReturn(0); 17246947451fSStefano Zampini } 17256947451fSStefano Zampini 17266947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVec_MPIDense(Mat A,PetscInt col,Vec *v) 17276947451fSStefano Zampini { 17286947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17296947451fSStefano Zampini PetscErrorCode ierr; 17306947451fSStefano Zampini 17316947451fSStefano Zampini PetscFunctionBegin; 1732*5ea7661aSPierre Jolivet if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 17336947451fSStefano Zampini if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector"); 17346947451fSStefano Zampini a->vecinuse = 0; 17356947451fSStefano Zampini ierr = MatDenseRestoreArray(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 17366947451fSStefano Zampini ierr = VecResetArray(a->cvec);CHKERRQ(ierr); 17376947451fSStefano Zampini *v = NULL; 17386947451fSStefano Zampini PetscFunctionReturn(0); 17396947451fSStefano Zampini } 17406947451fSStefano Zampini 17416947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecRead_MPIDense(Mat A,PetscInt col,Vec *v) 17426947451fSStefano Zampini { 17436947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17446947451fSStefano Zampini PetscErrorCode ierr; 17456947451fSStefano Zampini PetscInt lda; 17466947451fSStefano Zampini 17476947451fSStefano Zampini PetscFunctionBegin; 1748*5ea7661aSPierre Jolivet if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1749*5ea7661aSPierre Jolivet if (a->matinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 17506947451fSStefano Zampini if (!a->cvec) { 17516947451fSStefano Zampini ierr = VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr); 17526947451fSStefano Zampini } 17536947451fSStefano Zampini a->vecinuse = col + 1; 17546947451fSStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 17556947451fSStefano Zampini ierr = MatDenseGetArrayRead(a->A,&a->ptrinuse);CHKERRQ(ierr); 17566947451fSStefano Zampini ierr = VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr); 17576947451fSStefano Zampini ierr = VecLockReadPush(a->cvec);CHKERRQ(ierr); 17586947451fSStefano Zampini *v = a->cvec; 17596947451fSStefano Zampini PetscFunctionReturn(0); 17606947451fSStefano Zampini } 17616947451fSStefano Zampini 17626947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecRead_MPIDense(Mat A,PetscInt col,Vec *v) 17636947451fSStefano Zampini { 17646947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17656947451fSStefano Zampini PetscErrorCode ierr; 17666947451fSStefano Zampini 17676947451fSStefano Zampini PetscFunctionBegin; 1768*5ea7661aSPierre Jolivet if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 17696947451fSStefano Zampini if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector"); 17706947451fSStefano Zampini a->vecinuse = 0; 17716947451fSStefano Zampini ierr = MatDenseRestoreArrayRead(a->A,&a->ptrinuse);CHKERRQ(ierr); 17726947451fSStefano Zampini ierr = VecLockReadPop(a->cvec);CHKERRQ(ierr); 17736947451fSStefano Zampini ierr = VecResetArray(a->cvec);CHKERRQ(ierr); 17746947451fSStefano Zampini *v = NULL; 17756947451fSStefano Zampini PetscFunctionReturn(0); 17766947451fSStefano Zampini } 17776947451fSStefano Zampini 17786947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecWrite_MPIDense(Mat A,PetscInt col,Vec *v) 17796947451fSStefano Zampini { 17806947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17816947451fSStefano Zampini PetscErrorCode ierr; 17826947451fSStefano Zampini PetscInt lda; 17836947451fSStefano Zampini 17846947451fSStefano Zampini PetscFunctionBegin; 1785*5ea7661aSPierre Jolivet if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1786*5ea7661aSPierre Jolivet if (a->matinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 17876947451fSStefano Zampini if (!a->cvec) { 17886947451fSStefano Zampini ierr = VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr); 17896947451fSStefano Zampini } 17906947451fSStefano Zampini a->vecinuse = col + 1; 17916947451fSStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 17926947451fSStefano Zampini ierr = MatDenseGetArrayWrite(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 17936947451fSStefano Zampini ierr = VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr); 17946947451fSStefano Zampini *v = a->cvec; 17956947451fSStefano Zampini PetscFunctionReturn(0); 17966947451fSStefano Zampini } 17976947451fSStefano Zampini 17986947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDense(Mat A,PetscInt col,Vec *v) 17996947451fSStefano Zampini { 18006947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 18016947451fSStefano Zampini PetscErrorCode ierr; 18026947451fSStefano Zampini 18036947451fSStefano Zampini PetscFunctionBegin; 1804*5ea7661aSPierre Jolivet if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 18056947451fSStefano Zampini if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector"); 18066947451fSStefano Zampini a->vecinuse = 0; 18076947451fSStefano Zampini ierr = MatDenseRestoreArrayWrite(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 18086947451fSStefano Zampini ierr = VecResetArray(a->cvec);CHKERRQ(ierr); 18096947451fSStefano Zampini *v = NULL; 18106947451fSStefano Zampini PetscFunctionReturn(0); 18116947451fSStefano Zampini } 18126947451fSStefano Zampini 1813*5ea7661aSPierre Jolivet PetscErrorCode MatDenseGetSubMatrix_MPIDense(Mat A,PetscInt cbegin,PetscInt cend,Mat *v) 1814*5ea7661aSPierre Jolivet { 1815*5ea7661aSPierre Jolivet Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1816*5ea7661aSPierre Jolivet PetscInt lda; 1817*5ea7661aSPierre Jolivet PetscErrorCode ierr; 1818*5ea7661aSPierre Jolivet 1819*5ea7661aSPierre Jolivet PetscFunctionBegin; 1820*5ea7661aSPierre Jolivet if (a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1821*5ea7661aSPierre Jolivet if (a->matinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1822*5ea7661aSPierre Jolivet if (a->cmat && cend-cbegin != a->cmat->cmap->N) { 1823*5ea7661aSPierre Jolivet ierr = MatDestroy(&a->cmat);CHKERRQ(ierr); 1824*5ea7661aSPierre Jolivet } 1825*5ea7661aSPierre Jolivet ierr = MatDenseGetArray(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 1826*5ea7661aSPierre Jolivet ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 1827*5ea7661aSPierre Jolivet if (!a->cmat) { 1828*5ea7661aSPierre Jolivet ierr = MatCreateDense(PetscObjectComm((PetscObject)A),A->rmap->n,PETSC_DECIDE,A->rmap->N,cend-cbegin,(PetscScalar*)a->ptrinuse + (size_t)cbegin * (size_t)lda,&a->cmat);CHKERRQ(ierr); 1829*5ea7661aSPierre Jolivet ierr = MatDenseSetLDA(a->cmat,lda);CHKERRQ(ierr); 1830*5ea7661aSPierre Jolivet } else { 1831*5ea7661aSPierre Jolivet ierr = MatDensePlaceArray(a->cmat,a->ptrinuse + (size_t)cbegin * (size_t)lda);CHKERRQ(ierr); 1832*5ea7661aSPierre Jolivet } 1833*5ea7661aSPierre Jolivet a->matinuse = cbegin + 1; 1834*5ea7661aSPierre Jolivet *v = a->cmat; 1835*5ea7661aSPierre Jolivet PetscFunctionReturn(0); 1836*5ea7661aSPierre Jolivet } 1837*5ea7661aSPierre Jolivet 1838*5ea7661aSPierre Jolivet PetscErrorCode MatDenseRestoreSubMatrix_MPIDense(Mat A,Mat *v) 1839*5ea7661aSPierre Jolivet { 1840*5ea7661aSPierre Jolivet Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1841*5ea7661aSPierre Jolivet PetscErrorCode ierr; 1842*5ea7661aSPierre Jolivet 1843*5ea7661aSPierre Jolivet PetscFunctionBegin; 1844*5ea7661aSPierre Jolivet if (!a->matinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetSubMatrix() first"); 1845*5ea7661aSPierre Jolivet if (!a->cmat) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal matrix"); 1846*5ea7661aSPierre Jolivet a->matinuse = 0; 1847*5ea7661aSPierre Jolivet ierr = MatDenseRestoreArray(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 1848*5ea7661aSPierre Jolivet ierr = MatDenseResetArray(a->cmat);CHKERRQ(ierr); 1849*5ea7661aSPierre Jolivet *v = NULL; 1850*5ea7661aSPierre Jolivet PetscFunctionReturn(0); 1851*5ea7661aSPierre Jolivet } 1852*5ea7661aSPierre Jolivet 18538cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIDense(Mat mat) 1854273d9f13SBarry Smith { 1855273d9f13SBarry Smith Mat_MPIDense *a; 1856dfbe8321SBarry Smith PetscErrorCode ierr; 1857273d9f13SBarry Smith 1858273d9f13SBarry Smith PetscFunctionBegin; 1859b00a9115SJed Brown ierr = PetscNewLog(mat,&a);CHKERRQ(ierr); 1860b0a32e0cSBarry Smith mat->data = (void*)a; 1861273d9f13SBarry Smith ierr = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1862273d9f13SBarry Smith 1863273d9f13SBarry Smith mat->insertmode = NOT_SET_VALUES; 1864ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&a->rank);CHKERRQ(ierr); 1865ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&a->size);CHKERRQ(ierr); 1866273d9f13SBarry Smith 1867273d9f13SBarry Smith /* build cache for off array entries formed */ 1868273d9f13SBarry Smith a->donotstash = PETSC_FALSE; 18692205254eSKarl Rupp 1870ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)mat),1,&mat->stash);CHKERRQ(ierr); 1871273d9f13SBarry Smith 1872273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 1873273d9f13SBarry Smith a->lvec = 0; 1874273d9f13SBarry Smith a->Mvctx = 0; 1875273d9f13SBarry Smith a->roworiented = PETSC_TRUE; 1876273d9f13SBarry Smith 187749a6ff4bSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",MatDenseGetLDA_MPIDense);CHKERRQ(ierr); 1878ad16ce7aSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseSetLDA_C",MatDenseSetLDA_MPIDense);CHKERRQ(ierr); 1879bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",MatDenseGetArray_MPIDense);CHKERRQ(ierr); 18808572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",MatDenseRestoreArray_MPIDense);CHKERRQ(ierr); 18818572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",MatDenseGetArrayRead_MPIDense);CHKERRQ(ierr); 18828572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",MatDenseRestoreArrayRead_MPIDense);CHKERRQ(ierr); 18836947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayWrite_C",MatDenseGetArrayWrite_MPIDense);CHKERRQ(ierr); 18846947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayWrite_C",MatDenseRestoreArrayWrite_MPIDense);CHKERRQ(ierr); 1885d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",MatDensePlaceArray_MPIDense);CHKERRQ(ierr); 1886d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",MatDenseResetArray_MPIDense);CHKERRQ(ierr); 1887d5ea218eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseReplaceArray_C",MatDenseReplaceArray_MPIDense);CHKERRQ(ierr); 18886947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDense);CHKERRQ(ierr); 18896947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDense);CHKERRQ(ierr); 18906947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDense);CHKERRQ(ierr); 18916947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDense);CHKERRQ(ierr); 18926947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDense);CHKERRQ(ierr); 18936947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDense);CHKERRQ(ierr); 1894*5ea7661aSPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetSubMatrix_C",MatDenseGetSubMatrix_MPIDense);CHKERRQ(ierr); 1895*5ea7661aSPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreSubMatrix_C",MatDenseRestoreSubMatrix_MPIDense);CHKERRQ(ierr); 18968baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 18978baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",MatConvert_MPIDense_Elemental);CHKERRQ(ierr); 18988baccfbdSHong Zhang #endif 1899637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1900637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_mpidensecuda_C",MatConvert_MPIDense_MPIDenseCUDA);CHKERRQ(ierr); 1901637a0070SStefano Zampini #endif 1902bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",MatMPIDenseSetPreallocation_MPIDense);CHKERRQ(ierr); 19034222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaij_mpidense_C",MatProductSetFromOptions_MPIAIJ_MPIDense);CHKERRQ(ierr); 19044222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaij_C",MatProductSetFromOptions_MPIDense_MPIAIJ);CHKERRQ(ierr); 19056718818eSStefano Zampini #if defined(PETSC_HAVE_CUDA) 19066718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaijcusparse_mpidense_C",MatProductSetFromOptions_MPIAIJ_MPIDense);CHKERRQ(ierr); 19076718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaijcusparse_C",MatProductSetFromOptions_MPIDense_MPIAIJ);CHKERRQ(ierr); 19086718818eSStefano Zampini #endif 19098949adfdSHong Zhang 1910af53bab2SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",MatDenseGetColumn_MPIDense);CHKERRQ(ierr); 1911af53bab2SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",MatDenseRestoreColumn_MPIDense);CHKERRQ(ierr); 191238aed534SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)mat,MATMPIDENSE);CHKERRQ(ierr); 1913273d9f13SBarry Smith PetscFunctionReturn(0); 1914273d9f13SBarry Smith } 1915273d9f13SBarry Smith 1916209238afSKris Buschelman /*MC 1917637a0070SStefano Zampini MATMPIDENSECUDA - MATMPIDENSECUDA = "mpidensecuda" - A matrix type to be used for distributed dense matrices on GPUs. 1918637a0070SStefano Zampini 1919637a0070SStefano Zampini Options Database Keys: 1920637a0070SStefano Zampini . -mat_type mpidensecuda - sets the matrix type to "mpidensecuda" during a call to MatSetFromOptions() 1921637a0070SStefano Zampini 1922637a0070SStefano Zampini Level: beginner 1923637a0070SStefano Zampini 1924637a0070SStefano Zampini .seealso: 1925637a0070SStefano Zampini 1926637a0070SStefano Zampini M*/ 1927637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1928637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreate_MPIDenseCUDA(Mat B) 1929637a0070SStefano Zampini { 1930637a0070SStefano Zampini PetscErrorCode ierr; 1931637a0070SStefano Zampini 1932637a0070SStefano Zampini PetscFunctionBegin; 1933637a0070SStefano Zampini ierr = MatCreate_MPIDense(B);CHKERRQ(ierr); 1934637a0070SStefano Zampini ierr = MatConvert_MPIDense_MPIDenseCUDA(B,MATMPIDENSECUDA,MAT_INPLACE_MATRIX,&B);CHKERRQ(ierr); 1935637a0070SStefano Zampini PetscFunctionReturn(0); 1936637a0070SStefano Zampini } 1937637a0070SStefano Zampini #endif 1938637a0070SStefano Zampini 1939637a0070SStefano Zampini /*MC 1940002d173eSKris Buschelman MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices. 1941209238afSKris Buschelman 1942209238afSKris Buschelman This matrix type is identical to MATSEQDENSE when constructed with a single process communicator, 1943209238afSKris Buschelman and MATMPIDENSE otherwise. 1944209238afSKris Buschelman 1945209238afSKris Buschelman Options Database Keys: 1946209238afSKris Buschelman . -mat_type dense - sets the matrix type to "dense" during a call to MatSetFromOptions() 1947209238afSKris Buschelman 1948209238afSKris Buschelman Level: beginner 1949209238afSKris Buschelman 195001b82886SBarry Smith 19516947451fSStefano Zampini .seealso: MATSEQDENSE,MATMPIDENSE,MATDENSECUDA 19526947451fSStefano Zampini M*/ 19536947451fSStefano Zampini 19546947451fSStefano Zampini /*MC 19556947451fSStefano Zampini MATDENSECUDA - MATDENSECUDA = "densecuda" - A matrix type to be used for dense matrices on GPUs. 19566947451fSStefano Zampini 19576947451fSStefano Zampini This matrix type is identical to MATSEQDENSECUDA when constructed with a single process communicator, 19586947451fSStefano Zampini and MATMPIDENSECUDA otherwise. 19596947451fSStefano Zampini 19606947451fSStefano Zampini Options Database Keys: 19616947451fSStefano Zampini . -mat_type densecuda - sets the matrix type to "densecuda" during a call to MatSetFromOptions() 19626947451fSStefano Zampini 19636947451fSStefano Zampini Level: beginner 19646947451fSStefano Zampini 19656947451fSStefano Zampini .seealso: MATSEQDENSECUDA,MATMPIDENSECUDA,MATDENSE 1966209238afSKris Buschelman M*/ 1967209238afSKris Buschelman 1968273d9f13SBarry Smith /*@C 1969273d9f13SBarry Smith MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries 1970273d9f13SBarry Smith 1971273d9f13SBarry Smith Not collective 1972273d9f13SBarry Smith 1973273d9f13SBarry Smith Input Parameters: 19741c4f3114SJed Brown . B - the matrix 19750298fd71SBarry Smith - data - optional location of matrix data. Set data=NULL for PETSc 1976273d9f13SBarry Smith to control all matrix memory allocation. 1977273d9f13SBarry Smith 1978273d9f13SBarry Smith Notes: 1979273d9f13SBarry Smith The dense format is fully compatible with standard Fortran 77 1980273d9f13SBarry Smith storage by columns. 1981273d9f13SBarry Smith 1982273d9f13SBarry Smith The data input variable is intended primarily for Fortran programmers 1983273d9f13SBarry Smith who wish to allocate their own matrix memory space. Most users should 19840298fd71SBarry Smith set data=NULL. 1985273d9f13SBarry Smith 1986273d9f13SBarry Smith Level: intermediate 1987273d9f13SBarry Smith 1988273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 1989273d9f13SBarry Smith @*/ 19901c4f3114SJed Brown PetscErrorCode MatMPIDenseSetPreallocation(Mat B,PetscScalar *data) 1991273d9f13SBarry Smith { 19924ac538c5SBarry Smith PetscErrorCode ierr; 1993273d9f13SBarry Smith 1994273d9f13SBarry Smith PetscFunctionBegin; 1995d5ea218eSStefano Zampini PetscValidHeaderSpecific(B,MAT_CLASSID,1); 19961c4f3114SJed Brown ierr = PetscTryMethod(B,"MatMPIDenseSetPreallocation_C",(Mat,PetscScalar*),(B,data));CHKERRQ(ierr); 1997273d9f13SBarry Smith PetscFunctionReturn(0); 1998273d9f13SBarry Smith } 1999273d9f13SBarry Smith 2000d3042a70SBarry Smith /*@ 2001637a0070SStefano Zampini MatDensePlaceArray - Allows one to replace the array in a dense matrix with an 2002d3042a70SBarry Smith array provided by the user. This is useful to avoid copying an array 2003d3042a70SBarry Smith into a matrix 2004d3042a70SBarry Smith 2005d3042a70SBarry Smith Not Collective 2006d3042a70SBarry Smith 2007d3042a70SBarry Smith Input Parameters: 2008d3042a70SBarry Smith + mat - the matrix 2009d3042a70SBarry Smith - array - the array in column major order 2010d3042a70SBarry Smith 2011d3042a70SBarry Smith Notes: 2012d3042a70SBarry Smith You can return to the original array with a call to MatDenseResetArray(). The user is responsible for freeing this array; it will not be 2013d3042a70SBarry Smith freed when the matrix is destroyed. 2014d3042a70SBarry Smith 2015d3042a70SBarry Smith Level: developer 2016d3042a70SBarry Smith 2017d3042a70SBarry Smith .seealso: MatDenseGetArray(), MatDenseResetArray(), VecPlaceArray(), VecGetArray(), VecRestoreArray(), VecReplaceArray(), VecResetArray() 2018d3042a70SBarry Smith 2019d3042a70SBarry Smith @*/ 2020637a0070SStefano Zampini PetscErrorCode MatDensePlaceArray(Mat mat,const PetscScalar *array) 2021d3042a70SBarry Smith { 2022d3042a70SBarry Smith PetscErrorCode ierr; 2023637a0070SStefano Zampini 2024d3042a70SBarry Smith PetscFunctionBegin; 2025d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2026d3042a70SBarry Smith ierr = PetscUseMethod(mat,"MatDensePlaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr); 2027d3042a70SBarry Smith ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 2028637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 2029637a0070SStefano Zampini mat->offloadmask = PETSC_OFFLOAD_CPU; 2030637a0070SStefano Zampini #endif 2031d3042a70SBarry Smith PetscFunctionReturn(0); 2032d3042a70SBarry Smith } 2033d3042a70SBarry Smith 2034d3042a70SBarry Smith /*@ 2035d3042a70SBarry Smith MatDenseResetArray - Resets the matrix array to that it previously had before the call to MatDensePlaceArray() 2036d3042a70SBarry Smith 2037d3042a70SBarry Smith Not Collective 2038d3042a70SBarry Smith 2039d3042a70SBarry Smith Input Parameters: 2040d3042a70SBarry Smith . mat - the matrix 2041d3042a70SBarry Smith 2042d3042a70SBarry Smith Notes: 2043d3042a70SBarry Smith You can only call this after a call to MatDensePlaceArray() 2044d3042a70SBarry Smith 2045d3042a70SBarry Smith Level: developer 2046d3042a70SBarry Smith 2047d3042a70SBarry Smith .seealso: MatDenseGetArray(), MatDensePlaceArray(), VecPlaceArray(), VecGetArray(), VecRestoreArray(), VecReplaceArray(), VecResetArray() 2048d3042a70SBarry Smith 2049d3042a70SBarry Smith @*/ 2050d3042a70SBarry Smith PetscErrorCode MatDenseResetArray(Mat mat) 2051d3042a70SBarry Smith { 2052d3042a70SBarry Smith PetscErrorCode ierr; 2053637a0070SStefano Zampini 2054d3042a70SBarry Smith PetscFunctionBegin; 2055d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2056d3042a70SBarry Smith ierr = PetscUseMethod(mat,"MatDenseResetArray_C",(Mat),(mat));CHKERRQ(ierr); 2057d3042a70SBarry Smith ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 2058d3042a70SBarry Smith PetscFunctionReturn(0); 2059d3042a70SBarry Smith } 2060d3042a70SBarry Smith 2061d5ea218eSStefano Zampini /*@ 2062d5ea218eSStefano Zampini MatDenseReplaceArray - Allows one to replace the array in a dense matrix with an 2063d5ea218eSStefano Zampini array provided by the user. This is useful to avoid copying an array 2064d5ea218eSStefano Zampini into a matrix 2065d5ea218eSStefano Zampini 2066d5ea218eSStefano Zampini Not Collective 2067d5ea218eSStefano Zampini 2068d5ea218eSStefano Zampini Input Parameters: 2069d5ea218eSStefano Zampini + mat - the matrix 2070d5ea218eSStefano Zampini - array - the array in column major order 2071d5ea218eSStefano Zampini 2072d5ea218eSStefano Zampini Notes: 2073d5ea218eSStefano Zampini The memory passed in MUST be obtained with PetscMalloc() and CANNOT be 2074d5ea218eSStefano Zampini freed by the user. It will be freed when the matrix is destroyed. 2075d5ea218eSStefano Zampini 2076d5ea218eSStefano Zampini Level: developer 2077d5ea218eSStefano Zampini 2078d5ea218eSStefano Zampini .seealso: MatDenseGetArray(), VecReplaceArray() 2079d5ea218eSStefano Zampini @*/ 2080d5ea218eSStefano Zampini PetscErrorCode MatDenseReplaceArray(Mat mat,const PetscScalar *array) 2081d5ea218eSStefano Zampini { 2082d5ea218eSStefano Zampini PetscErrorCode ierr; 2083d5ea218eSStefano Zampini 2084d5ea218eSStefano Zampini PetscFunctionBegin; 2085d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2086d5ea218eSStefano Zampini ierr = PetscUseMethod(mat,"MatDenseReplaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr); 2087d5ea218eSStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 2088d5ea218eSStefano Zampini #if defined(PETSC_HAVE_CUDA) 2089d5ea218eSStefano Zampini mat->offloadmask = PETSC_OFFLOAD_CPU; 2090d5ea218eSStefano Zampini #endif 2091d5ea218eSStefano Zampini PetscFunctionReturn(0); 2092d5ea218eSStefano Zampini } 2093d5ea218eSStefano Zampini 2094637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 20958965ea79SLois Curfman McInnes /*@C 2096637a0070SStefano Zampini MatDenseCUDAPlaceArray - Allows one to replace the GPU array in a dense matrix with an 2097637a0070SStefano Zampini array provided by the user. This is useful to avoid copying an array 2098637a0070SStefano Zampini into a matrix 2099637a0070SStefano Zampini 2100637a0070SStefano Zampini Not Collective 2101637a0070SStefano Zampini 2102637a0070SStefano Zampini Input Parameters: 2103637a0070SStefano Zampini + mat - the matrix 2104637a0070SStefano Zampini - array - the array in column major order 2105637a0070SStefano Zampini 2106637a0070SStefano Zampini Notes: 2107637a0070SStefano Zampini You can return to the original array with a call to MatDenseCUDAResetArray(). The user is responsible for freeing this array; it will not be 2108637a0070SStefano Zampini freed when the matrix is destroyed. The array must have been allocated with cudaMalloc(). 2109637a0070SStefano Zampini 2110637a0070SStefano Zampini Level: developer 2111637a0070SStefano Zampini 2112637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDAResetArray() 2113637a0070SStefano Zampini @*/ 2114637a0070SStefano Zampini PetscErrorCode MatDenseCUDAPlaceArray(Mat mat,const PetscScalar *array) 2115637a0070SStefano Zampini { 2116637a0070SStefano Zampini PetscErrorCode ierr; 2117637a0070SStefano Zampini 2118637a0070SStefano Zampini PetscFunctionBegin; 2119d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2120637a0070SStefano Zampini ierr = PetscUseMethod(mat,"MatDenseCUDAPlaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr); 2121637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 2122637a0070SStefano Zampini mat->offloadmask = PETSC_OFFLOAD_GPU; 2123637a0070SStefano Zampini PetscFunctionReturn(0); 2124637a0070SStefano Zampini } 2125637a0070SStefano Zampini 2126637a0070SStefano Zampini /*@C 2127637a0070SStefano Zampini MatDenseCUDAResetArray - Resets the matrix array to that it previously had before the call to MatDenseCUDAPlaceArray() 2128637a0070SStefano Zampini 2129637a0070SStefano Zampini Not Collective 2130637a0070SStefano Zampini 2131637a0070SStefano Zampini Input Parameters: 2132637a0070SStefano Zampini . mat - the matrix 2133637a0070SStefano Zampini 2134637a0070SStefano Zampini Notes: 2135637a0070SStefano Zampini You can only call this after a call to MatDenseCUDAPlaceArray() 2136637a0070SStefano Zampini 2137637a0070SStefano Zampini Level: developer 2138637a0070SStefano Zampini 2139637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDAPlaceArray() 2140637a0070SStefano Zampini 2141637a0070SStefano Zampini @*/ 2142637a0070SStefano Zampini PetscErrorCode MatDenseCUDAResetArray(Mat mat) 2143637a0070SStefano Zampini { 2144637a0070SStefano Zampini PetscErrorCode ierr; 2145637a0070SStefano Zampini 2146637a0070SStefano Zampini PetscFunctionBegin; 2147d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2148637a0070SStefano Zampini ierr = PetscUseMethod(mat,"MatDenseCUDAResetArray_C",(Mat),(mat));CHKERRQ(ierr); 2149637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 2150637a0070SStefano Zampini PetscFunctionReturn(0); 2151637a0070SStefano Zampini } 2152637a0070SStefano Zampini 2153637a0070SStefano Zampini /*@C 2154d5ea218eSStefano Zampini MatDenseCUDAReplaceArray - Allows one to replace the GPU array in a dense matrix with an 2155d5ea218eSStefano Zampini array provided by the user. This is useful to avoid copying an array 2156d5ea218eSStefano Zampini into a matrix 2157d5ea218eSStefano Zampini 2158d5ea218eSStefano Zampini Not Collective 2159d5ea218eSStefano Zampini 2160d5ea218eSStefano Zampini Input Parameters: 2161d5ea218eSStefano Zampini + mat - the matrix 2162d5ea218eSStefano Zampini - array - the array in column major order 2163d5ea218eSStefano Zampini 2164d5ea218eSStefano Zampini Notes: 2165d5ea218eSStefano Zampini This permanently replaces the GPU array and frees the memory associated with the old GPU array. 2166d5ea218eSStefano Zampini The memory passed in CANNOT be freed by the user. It will be freed 2167d5ea218eSStefano Zampini when the matrix is destroyed. The array should respect the matrix leading dimension. 2168d5ea218eSStefano Zampini 2169d5ea218eSStefano Zampini Level: developer 2170d5ea218eSStefano Zampini 2171d5ea218eSStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDAPlaceArray(), MatDenseCUDAResetArray() 2172d5ea218eSStefano Zampini @*/ 2173d5ea218eSStefano Zampini PetscErrorCode MatDenseCUDAReplaceArray(Mat mat,const PetscScalar *array) 2174d5ea218eSStefano Zampini { 2175d5ea218eSStefano Zampini PetscErrorCode ierr; 2176d5ea218eSStefano Zampini 2177d5ea218eSStefano Zampini PetscFunctionBegin; 2178d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2179d5ea218eSStefano Zampini ierr = PetscUseMethod(mat,"MatDenseCUDAReplaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr); 2180d5ea218eSStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 2181d5ea218eSStefano Zampini mat->offloadmask = PETSC_OFFLOAD_GPU; 2182d5ea218eSStefano Zampini PetscFunctionReturn(0); 2183d5ea218eSStefano Zampini } 2184d5ea218eSStefano Zampini 2185d5ea218eSStefano Zampini /*@C 2186637a0070SStefano Zampini MatDenseCUDAGetArrayWrite - Provides write access to the CUDA buffer inside a dense matrix. 2187637a0070SStefano Zampini 2188637a0070SStefano Zampini Not Collective 2189637a0070SStefano Zampini 2190637a0070SStefano Zampini Input Parameters: 2191637a0070SStefano Zampini . A - the matrix 2192637a0070SStefano Zampini 2193637a0070SStefano Zampini Output Parameters 2194637a0070SStefano Zampini . array - the GPU array in column major order 2195637a0070SStefano Zampini 2196637a0070SStefano Zampini Notes: 2197637a0070SStefano Zampini The data on the GPU may not be updated due to operations done on the CPU. If you need updated data, use MatDenseCUDAGetArray(). The array must be restored with MatDenseCUDARestoreArrayWrite() when no longer needed. 2198637a0070SStefano Zampini 2199637a0070SStefano Zampini Level: developer 2200637a0070SStefano Zampini 2201637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayRead(), MatDenseCUDARestoreArrayRead() 2202637a0070SStefano Zampini @*/ 2203637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArrayWrite(Mat A, PetscScalar **a) 2204637a0070SStefano Zampini { 2205637a0070SStefano Zampini PetscErrorCode ierr; 2206637a0070SStefano Zampini 2207637a0070SStefano Zampini PetscFunctionBegin; 2208d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2209637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDAGetArrayWrite_C",(Mat,PetscScalar**),(A,a));CHKERRQ(ierr); 2210637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr); 2211637a0070SStefano Zampini PetscFunctionReturn(0); 2212637a0070SStefano Zampini } 2213637a0070SStefano Zampini 2214637a0070SStefano Zampini /*@C 2215637a0070SStefano Zampini MatDenseCUDARestoreArrayWrite - Restore write access to the CUDA buffer inside a dense matrix previously obtained with MatDenseCUDAGetArrayWrite(). 2216637a0070SStefano Zampini 2217637a0070SStefano Zampini Not Collective 2218637a0070SStefano Zampini 2219637a0070SStefano Zampini Input Parameters: 2220637a0070SStefano Zampini + A - the matrix 2221637a0070SStefano Zampini - array - the GPU array in column major order 2222637a0070SStefano Zampini 2223637a0070SStefano Zampini Notes: 2224637a0070SStefano Zampini 2225637a0070SStefano Zampini Level: developer 2226637a0070SStefano Zampini 2227637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead(), MatDenseCUDAGetArrayRead() 2228637a0070SStefano Zampini @*/ 2229637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArrayWrite(Mat A, PetscScalar **a) 2230637a0070SStefano Zampini { 2231637a0070SStefano Zampini PetscErrorCode ierr; 2232637a0070SStefano Zampini 2233637a0070SStefano Zampini PetscFunctionBegin; 2234d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2235637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDARestoreArrayWrite_C",(Mat,PetscScalar**),(A,a));CHKERRQ(ierr); 2236637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr); 2237637a0070SStefano Zampini A->offloadmask = PETSC_OFFLOAD_GPU; 2238637a0070SStefano Zampini PetscFunctionReturn(0); 2239637a0070SStefano Zampini } 2240637a0070SStefano Zampini 2241637a0070SStefano Zampini /*@C 2242637a0070SStefano Zampini MatDenseCUDAGetArrayRead - Provides read-only access to the CUDA buffer inside a dense matrix. The array must be restored with MatDenseCUDARestoreArrayRead() when no longer needed. 2243637a0070SStefano Zampini 2244637a0070SStefano Zampini Not Collective 2245637a0070SStefano Zampini 2246637a0070SStefano Zampini Input Parameters: 2247637a0070SStefano Zampini . A - the matrix 2248637a0070SStefano Zampini 2249637a0070SStefano Zampini Output Parameters 2250637a0070SStefano Zampini . array - the GPU array in column major order 2251637a0070SStefano Zampini 2252637a0070SStefano Zampini Notes: 2253637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). 2254637a0070SStefano Zampini 2255637a0070SStefano Zampini Level: developer 2256637a0070SStefano Zampini 2257637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead() 2258637a0070SStefano Zampini @*/ 2259637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArrayRead(Mat A, const PetscScalar **a) 2260637a0070SStefano Zampini { 2261637a0070SStefano Zampini PetscErrorCode ierr; 2262637a0070SStefano Zampini 2263637a0070SStefano Zampini PetscFunctionBegin; 2264d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2265637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDAGetArrayRead_C",(Mat,const PetscScalar**),(A,a));CHKERRQ(ierr); 2266637a0070SStefano Zampini PetscFunctionReturn(0); 2267637a0070SStefano Zampini } 2268637a0070SStefano Zampini 2269637a0070SStefano Zampini /*@C 2270637a0070SStefano Zampini MatDenseCUDARestoreArrayRead - Restore read-only access to the CUDA buffer inside a dense matrix previously obtained with a call to MatDenseCUDAGetArrayRead(). 2271637a0070SStefano Zampini 2272637a0070SStefano Zampini Not Collective 2273637a0070SStefano Zampini 2274637a0070SStefano Zampini Input Parameters: 2275637a0070SStefano Zampini + A - the matrix 2276637a0070SStefano Zampini - array - the GPU array in column major order 2277637a0070SStefano Zampini 2278637a0070SStefano Zampini Notes: 2279637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). 2280637a0070SStefano Zampini 2281637a0070SStefano Zampini Level: developer 2282637a0070SStefano Zampini 2283637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDAGetArrayRead() 2284637a0070SStefano Zampini @*/ 2285637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArrayRead(Mat A, const PetscScalar **a) 2286637a0070SStefano Zampini { 2287637a0070SStefano Zampini PetscErrorCode ierr; 2288637a0070SStefano Zampini 2289637a0070SStefano Zampini PetscFunctionBegin; 2290637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDARestoreArrayRead_C",(Mat,const PetscScalar**),(A,a));CHKERRQ(ierr); 2291637a0070SStefano Zampini PetscFunctionReturn(0); 2292637a0070SStefano Zampini } 2293637a0070SStefano Zampini 2294637a0070SStefano Zampini /*@C 2295637a0070SStefano Zampini MatDenseCUDAGetArray - Provides access to the CUDA buffer inside a dense matrix. The array must be restored with MatDenseCUDARestoreArray() when no longer needed. 2296637a0070SStefano Zampini 2297637a0070SStefano Zampini Not Collective 2298637a0070SStefano Zampini 2299637a0070SStefano Zampini Input Parameters: 2300637a0070SStefano Zampini . A - the matrix 2301637a0070SStefano Zampini 2302637a0070SStefano Zampini Output Parameters 2303637a0070SStefano Zampini . array - the GPU array in column major order 2304637a0070SStefano Zampini 2305637a0070SStefano Zampini Notes: 2306637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). For read-only access, use MatDenseCUDAGetArrayRead(). 2307637a0070SStefano Zampini 2308637a0070SStefano Zampini Level: developer 2309637a0070SStefano Zampini 2310637a0070SStefano Zampini .seealso: MatDenseCUDAGetArrayRead(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead() 2311637a0070SStefano Zampini @*/ 2312637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArray(Mat A, PetscScalar **a) 2313637a0070SStefano Zampini { 2314637a0070SStefano Zampini PetscErrorCode ierr; 2315637a0070SStefano Zampini 2316637a0070SStefano Zampini PetscFunctionBegin; 2317d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2318637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDAGetArray_C",(Mat,PetscScalar**),(A,a));CHKERRQ(ierr); 2319637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr); 2320637a0070SStefano Zampini PetscFunctionReturn(0); 2321637a0070SStefano Zampini } 2322637a0070SStefano Zampini 2323637a0070SStefano Zampini /*@C 2324637a0070SStefano Zampini MatDenseCUDARestoreArray - Restore access to the CUDA buffer inside a dense matrix previously obtained with MatDenseCUDAGetArray(). 2325637a0070SStefano Zampini 2326637a0070SStefano Zampini Not Collective 2327637a0070SStefano Zampini 2328637a0070SStefano Zampini Input Parameters: 2329637a0070SStefano Zampini + A - the matrix 2330637a0070SStefano Zampini - array - the GPU array in column major order 2331637a0070SStefano Zampini 2332637a0070SStefano Zampini Notes: 2333637a0070SStefano Zampini 2334637a0070SStefano Zampini Level: developer 2335637a0070SStefano Zampini 2336637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead(), MatDenseCUDAGetArrayRead() 2337637a0070SStefano Zampini @*/ 2338637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArray(Mat A, PetscScalar **a) 2339637a0070SStefano Zampini { 2340637a0070SStefano Zampini PetscErrorCode ierr; 2341637a0070SStefano Zampini 2342637a0070SStefano Zampini PetscFunctionBegin; 2343d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2344637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDARestoreArray_C",(Mat,PetscScalar**),(A,a));CHKERRQ(ierr); 2345637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr); 2346637a0070SStefano Zampini A->offloadmask = PETSC_OFFLOAD_GPU; 2347637a0070SStefano Zampini PetscFunctionReturn(0); 2348637a0070SStefano Zampini } 2349637a0070SStefano Zampini #endif 2350637a0070SStefano Zampini 2351637a0070SStefano Zampini /*@C 2352637a0070SStefano Zampini MatCreateDense - Creates a matrix in dense format. 23538965ea79SLois Curfman McInnes 2354d083f849SBarry Smith Collective 2355db81eaa0SLois Curfman McInnes 23568965ea79SLois Curfman McInnes Input Parameters: 2357db81eaa0SLois Curfman McInnes + comm - MPI communicator 23588965ea79SLois Curfman McInnes . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2359db81eaa0SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 23608965ea79SLois Curfman McInnes . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 2361db81eaa0SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 23626cfe35ddSJose E. Roman - data - optional location of matrix data. Set data=NULL (PETSC_NULL_SCALAR for Fortran users) for PETSc 2363dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 23648965ea79SLois Curfman McInnes 23658965ea79SLois Curfman McInnes Output Parameter: 2366477f1c0bSLois Curfman McInnes . A - the matrix 23678965ea79SLois Curfman McInnes 2368b259b22eSLois Curfman McInnes Notes: 236939ddd567SLois Curfman McInnes The dense format is fully compatible with standard Fortran 77 237039ddd567SLois Curfman McInnes storage by columns. 23718965ea79SLois Curfman McInnes 237218f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 237318f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 23746cfe35ddSJose E. Roman set data=NULL (PETSC_NULL_SCALAR for Fortran users). 237518f449edSLois Curfman McInnes 23768965ea79SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 23778965ea79SLois Curfman McInnes (possibly both). 23788965ea79SLois Curfman McInnes 2379027ccd11SLois Curfman McInnes Level: intermediate 2380027ccd11SLois Curfman McInnes 238139ddd567SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 23828965ea79SLois Curfman McInnes @*/ 238369b1f4b7SBarry Smith PetscErrorCode MatCreateDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 23848965ea79SLois Curfman McInnes { 23856849ba73SBarry Smith PetscErrorCode ierr; 238613f74950SBarry Smith PetscMPIInt size; 23878965ea79SLois Curfman McInnes 23883a40ed3dSBarry Smith PetscFunctionBegin; 2389f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 23908491ab44SLisandro Dalcin PetscValidLogicalCollectiveBool(*A,!!data,6); 2391f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2392273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2393273d9f13SBarry Smith if (size > 1) { 2394273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIDENSE);CHKERRQ(ierr); 2395273d9f13SBarry Smith ierr = MatMPIDenseSetPreallocation(*A,data);CHKERRQ(ierr); 23966cfe35ddSJose E. Roman if (data) { /* user provided data array, so no need to assemble */ 23976cfe35ddSJose E. Roman ierr = MatSetUpMultiply_MPIDense(*A);CHKERRQ(ierr); 23986cfe35ddSJose E. Roman (*A)->assembled = PETSC_TRUE; 23996cfe35ddSJose E. Roman } 2400273d9f13SBarry Smith } else { 2401273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr); 2402273d9f13SBarry Smith ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr); 24038c469469SLois Curfman McInnes } 24043a40ed3dSBarry Smith PetscFunctionReturn(0); 24058965ea79SLois Curfman McInnes } 24068965ea79SLois Curfman McInnes 2407637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 2408637a0070SStefano Zampini /*@C 2409637a0070SStefano Zampini MatCreateDenseCUDA - Creates a matrix in dense format using CUDA. 2410637a0070SStefano Zampini 2411637a0070SStefano Zampini Collective 2412637a0070SStefano Zampini 2413637a0070SStefano Zampini Input Parameters: 2414637a0070SStefano Zampini + comm - MPI communicator 2415637a0070SStefano Zampini . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2416637a0070SStefano Zampini . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 2417637a0070SStefano Zampini . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 2418637a0070SStefano Zampini . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 2419637a0070SStefano Zampini - data - optional location of GPU matrix data. Set data=NULL for PETSc 2420637a0070SStefano Zampini to control matrix memory allocation. 2421637a0070SStefano Zampini 2422637a0070SStefano Zampini Output Parameter: 2423637a0070SStefano Zampini . A - the matrix 2424637a0070SStefano Zampini 2425637a0070SStefano Zampini Notes: 2426637a0070SStefano Zampini 2427637a0070SStefano Zampini Level: intermediate 2428637a0070SStefano Zampini 2429637a0070SStefano Zampini .seealso: MatCreate(), MatCreateDense() 2430637a0070SStefano Zampini @*/ 2431637a0070SStefano Zampini PetscErrorCode MatCreateDenseCUDA(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 2432637a0070SStefano Zampini { 2433637a0070SStefano Zampini PetscErrorCode ierr; 2434637a0070SStefano Zampini PetscMPIInt size; 2435637a0070SStefano Zampini 2436637a0070SStefano Zampini PetscFunctionBegin; 2437637a0070SStefano Zampini ierr = MatCreate(comm,A);CHKERRQ(ierr); 2438637a0070SStefano Zampini PetscValidLogicalCollectiveBool(*A,!!data,6); 2439637a0070SStefano Zampini ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2440637a0070SStefano Zampini ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2441637a0070SStefano Zampini if (size > 1) { 2442637a0070SStefano Zampini ierr = MatSetType(*A,MATMPIDENSECUDA);CHKERRQ(ierr); 2443637a0070SStefano Zampini ierr = MatMPIDenseCUDASetPreallocation(*A,data);CHKERRQ(ierr); 2444637a0070SStefano Zampini if (data) { /* user provided data array, so no need to assemble */ 2445637a0070SStefano Zampini ierr = MatSetUpMultiply_MPIDense(*A);CHKERRQ(ierr); 2446637a0070SStefano Zampini (*A)->assembled = PETSC_TRUE; 2447637a0070SStefano Zampini } 2448637a0070SStefano Zampini } else { 2449637a0070SStefano Zampini ierr = MatSetType(*A,MATSEQDENSECUDA);CHKERRQ(ierr); 2450637a0070SStefano Zampini ierr = MatSeqDenseCUDASetPreallocation(*A,data);CHKERRQ(ierr); 2451637a0070SStefano Zampini } 2452637a0070SStefano Zampini PetscFunctionReturn(0); 2453637a0070SStefano Zampini } 2454637a0070SStefano Zampini #endif 2455637a0070SStefano Zampini 24566849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat) 24578965ea79SLois Curfman McInnes { 24588965ea79SLois Curfman McInnes Mat mat; 24593501a2bdSLois Curfman McInnes Mat_MPIDense *a,*oldmat = (Mat_MPIDense*)A->data; 2460dfbe8321SBarry Smith PetscErrorCode ierr; 24618965ea79SLois Curfman McInnes 24623a40ed3dSBarry Smith PetscFunctionBegin; 24638965ea79SLois Curfman McInnes *newmat = 0; 2464ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&mat);CHKERRQ(ierr); 2465d0f46423SBarry Smith ierr = MatSetSizes(mat,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 24667adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)A)->type_name);CHKERRQ(ierr); 2467834f8fabSBarry Smith a = (Mat_MPIDense*)mat->data; 24685aa7edbeSHong Zhang 2469d5f3da31SBarry Smith mat->factortype = A->factortype; 2470c456f294SBarry Smith mat->assembled = PETSC_TRUE; 2471273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 24728965ea79SLois Curfman McInnes 24738965ea79SLois Curfman McInnes a->size = oldmat->size; 24748965ea79SLois Curfman McInnes a->rank = oldmat->rank; 2475e0fa3b82SLois Curfman McInnes mat->insertmode = NOT_SET_VALUES; 24763782ba37SSatish Balay a->donotstash = oldmat->donotstash; 2477e04c1aa4SHong Zhang 24781e1e43feSBarry Smith ierr = PetscLayoutReference(A->rmap,&mat->rmap);CHKERRQ(ierr); 24791e1e43feSBarry Smith ierr = PetscLayoutReference(A->cmap,&mat->cmap);CHKERRQ(ierr); 24808965ea79SLois Curfman McInnes 24815609ef8eSBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 24823bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 2483637a0070SStefano Zampini ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 248401b82886SBarry Smith 24858965ea79SLois Curfman McInnes *newmat = mat; 24863a40ed3dSBarry Smith PetscFunctionReturn(0); 24878965ea79SLois Curfman McInnes } 24888965ea79SLois Curfman McInnes 2489eb91f321SVaclav Hapla PetscErrorCode MatLoad_MPIDense(Mat newMat, PetscViewer viewer) 2490eb91f321SVaclav Hapla { 2491eb91f321SVaclav Hapla PetscErrorCode ierr; 249287d5ce66SSatish Balay PetscBool isbinary; 249387d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 249487d5ce66SSatish Balay PetscBool ishdf5; 249587d5ce66SSatish Balay #endif 2496eb91f321SVaclav Hapla 2497eb91f321SVaclav Hapla PetscFunctionBegin; 2498eb91f321SVaclav Hapla PetscValidHeaderSpecific(newMat,MAT_CLASSID,1); 2499eb91f321SVaclav Hapla PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2); 2500eb91f321SVaclav Hapla /* force binary viewer to load .info file if it has not yet done so */ 2501eb91f321SVaclav Hapla ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr); 2502eb91f321SVaclav Hapla ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 250387d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 2504eb91f321SVaclav Hapla ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERHDF5, &ishdf5);CHKERRQ(ierr); 250587d5ce66SSatish Balay #endif 2506eb91f321SVaclav Hapla if (isbinary) { 25078491ab44SLisandro Dalcin ierr = MatLoad_Dense_Binary(newMat,viewer);CHKERRQ(ierr); 2508eb91f321SVaclav Hapla #if defined(PETSC_HAVE_HDF5) 250987d5ce66SSatish Balay } else if (ishdf5) { 2510eb91f321SVaclav Hapla ierr = MatLoad_Dense_HDF5(newMat,viewer);CHKERRQ(ierr); 2511eb91f321SVaclav Hapla #endif 251287d5ce66SSatish Balay } else SETERRQ2(PetscObjectComm((PetscObject)newMat),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)newMat)->type_name); 2513eb91f321SVaclav Hapla PetscFunctionReturn(0); 2514eb91f321SVaclav Hapla } 2515eb91f321SVaclav Hapla 25166718818eSStefano Zampini static PetscErrorCode MatEqual_MPIDense(Mat A,Mat B,PetscBool *flag) 25176e4ee0c6SHong Zhang { 25186e4ee0c6SHong Zhang Mat_MPIDense *matB = (Mat_MPIDense*)B->data,*matA = (Mat_MPIDense*)A->data; 25196e4ee0c6SHong Zhang Mat a,b; 2520ace3abfcSBarry Smith PetscBool flg; 25216e4ee0c6SHong Zhang PetscErrorCode ierr; 252290ace30eSBarry Smith 25236e4ee0c6SHong Zhang PetscFunctionBegin; 25246e4ee0c6SHong Zhang a = matA->A; 25256e4ee0c6SHong Zhang b = matB->A; 25266e4ee0c6SHong Zhang ierr = MatEqual(a,b,&flg);CHKERRQ(ierr); 2527b2566f29SBarry Smith ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 25286e4ee0c6SHong Zhang PetscFunctionReturn(0); 25296e4ee0c6SHong Zhang } 253090ace30eSBarry Smith 25316718818eSStefano Zampini PetscErrorCode MatDestroy_MatTransMatMult_MPIDense_MPIDense(void *data) 2532baa3c1c6SHong Zhang { 2533baa3c1c6SHong Zhang PetscErrorCode ierr; 25346718818eSStefano Zampini Mat_TransMatMultDense *atb = (Mat_TransMatMultDense *)data; 2535baa3c1c6SHong Zhang 2536baa3c1c6SHong Zhang PetscFunctionBegin; 2537637a0070SStefano Zampini ierr = PetscFree2(atb->sendbuf,atb->recvcounts);CHKERRQ(ierr); 2538637a0070SStefano Zampini ierr = MatDestroy(&atb->atb);CHKERRQ(ierr); 2539baa3c1c6SHong Zhang ierr = PetscFree(atb);CHKERRQ(ierr); 2540baa3c1c6SHong Zhang PetscFunctionReturn(0); 2541baa3c1c6SHong Zhang } 2542baa3c1c6SHong Zhang 25436718818eSStefano Zampini PetscErrorCode MatDestroy_MatMatTransMult_MPIDense_MPIDense(void *data) 2544cc48ffa7SToby Isaac { 2545cc48ffa7SToby Isaac PetscErrorCode ierr; 25466718818eSStefano Zampini Mat_MatTransMultDense *abt = (Mat_MatTransMultDense *)data; 2547cc48ffa7SToby Isaac 2548cc48ffa7SToby Isaac PetscFunctionBegin; 2549cc48ffa7SToby Isaac ierr = PetscFree2(abt->buf[0],abt->buf[1]);CHKERRQ(ierr); 2550faa55883SToby Isaac ierr = PetscFree2(abt->recvcounts,abt->recvdispls);CHKERRQ(ierr); 2551cc48ffa7SToby Isaac ierr = PetscFree(abt);CHKERRQ(ierr); 2552cc48ffa7SToby Isaac PetscFunctionReturn(0); 2553cc48ffa7SToby Isaac } 2554cc48ffa7SToby Isaac 25556718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 2556cb20be35SHong Zhang { 2557baa3c1c6SHong Zhang Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 25586718818eSStefano Zampini Mat_TransMatMultDense *atb; 2559cb20be35SHong Zhang PetscErrorCode ierr; 2560cb20be35SHong Zhang MPI_Comm comm; 25616718818eSStefano Zampini PetscMPIInt size,*recvcounts; 25626718818eSStefano Zampini PetscScalar *carray,*sendbuf; 2563637a0070SStefano Zampini const PetscScalar *atbarray; 2564d5017740SHong Zhang PetscInt i,cN=C->cmap->N,cM=C->rmap->N,proc,k,j; 2565e68c0b26SHong Zhang const PetscInt *ranges; 2566cb20be35SHong Zhang 2567cb20be35SHong Zhang PetscFunctionBegin; 25686718818eSStefano Zampini MatCheckProduct(C,3); 25696718818eSStefano Zampini if (!C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 25706718818eSStefano Zampini atb = (Mat_TransMatMultDense *)C->product->data; 25716718818eSStefano Zampini recvcounts = atb->recvcounts; 25726718818eSStefano Zampini sendbuf = atb->sendbuf; 25736718818eSStefano Zampini 2574cb20be35SHong Zhang ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 2575cb20be35SHong Zhang ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2576e68c0b26SHong Zhang 2577c5ef1628SHong Zhang /* compute atbarray = aseq^T * bseq */ 2578637a0070SStefano Zampini ierr = MatTransposeMatMult(a->A,b->A,atb->atb ? MAT_REUSE_MATRIX : MAT_INITIAL_MATRIX,PETSC_DEFAULT,&atb->atb);CHKERRQ(ierr); 2579cb20be35SHong Zhang 2580cb20be35SHong Zhang ierr = MatGetOwnershipRanges(C,&ranges);CHKERRQ(ierr); 2581c5ef1628SHong Zhang for (i=0; i<size; i++) recvcounts[i] = (ranges[i+1] - ranges[i])*cN; 2582cb20be35SHong Zhang 2583660d5466SHong Zhang /* arrange atbarray into sendbuf */ 2584637a0070SStefano Zampini ierr = MatDenseGetArrayRead(atb->atb,&atbarray);CHKERRQ(ierr); 2585637a0070SStefano Zampini for (proc=0, k=0; proc<size; proc++) { 2586baa3c1c6SHong Zhang for (j=0; j<cN; j++) { 2587c5ef1628SHong Zhang for (i=ranges[proc]; i<ranges[proc+1]; i++) sendbuf[k++] = atbarray[i+j*cM]; 2588cb20be35SHong Zhang } 2589cb20be35SHong Zhang } 2590637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(atb->atb,&atbarray);CHKERRQ(ierr); 2591637a0070SStefano Zampini 2592c5ef1628SHong Zhang /* sum all atbarray to local values of C */ 2593660d5466SHong Zhang ierr = MatDenseGetArray(c->A,&carray);CHKERRQ(ierr); 25943462b7efSHong Zhang ierr = MPI_Reduce_scatter(sendbuf,carray,recvcounts,MPIU_SCALAR,MPIU_SUM,comm);CHKERRQ(ierr); 2595660d5466SHong Zhang ierr = MatDenseRestoreArray(c->A,&carray);CHKERRQ(ierr); 2596cb20be35SHong Zhang PetscFunctionReturn(0); 2597cb20be35SHong Zhang } 2598cb20be35SHong Zhang 25996718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat C) 2600cb20be35SHong Zhang { 2601cb20be35SHong Zhang PetscErrorCode ierr; 2602cb20be35SHong Zhang MPI_Comm comm; 2603baa3c1c6SHong Zhang PetscMPIInt size; 2604660d5466SHong Zhang PetscInt cm=A->cmap->n,cM,cN=B->cmap->N; 2605baa3c1c6SHong Zhang Mat_TransMatMultDense *atb; 26066718818eSStefano Zampini PetscBool cisdense; 2607cb20be35SHong Zhang 2608cb20be35SHong Zhang PetscFunctionBegin; 26096718818eSStefano Zampini MatCheckProduct(C,3); 26106718818eSStefano Zampini if (C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty"); 2611baa3c1c6SHong Zhang ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 2612cb20be35SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) { 2613cb20be35SHong Zhang SETERRQ4(comm,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != B (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 2614cb20be35SHong Zhang } 2615cb20be35SHong Zhang 26164222ddf1SHong Zhang /* create matrix product C */ 26176718818eSStefano Zampini ierr = MatSetSizes(C,cm,B->cmap->n,A->cmap->N,B->cmap->N);CHKERRQ(ierr); 26186718818eSStefano Zampini ierr = PetscObjectTypeCompareAny((PetscObject)C,&cisdense,MATMPIDENSE,MATMPIDENSECUDA,"");CHKERRQ(ierr); 26196718818eSStefano Zampini if (!cisdense) { 26206718818eSStefano Zampini ierr = MatSetType(C,((PetscObject)A)->type_name);CHKERRQ(ierr); 26216718818eSStefano Zampini } 262218992e5dSStefano Zampini ierr = MatSetUp(C);CHKERRQ(ierr); 26234222ddf1SHong Zhang ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 26244222ddf1SHong Zhang ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2625baa3c1c6SHong Zhang 26264222ddf1SHong Zhang /* create data structure for reuse C */ 2627baa3c1c6SHong Zhang ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2628baa3c1c6SHong Zhang ierr = PetscNew(&atb);CHKERRQ(ierr); 26294222ddf1SHong Zhang cM = C->rmap->N; 26306718818eSStefano Zampini ierr = PetscMalloc2((size_t)cM*(size_t)cN,&atb->sendbuf,size,&atb->recvcounts);CHKERRQ(ierr); 2631baa3c1c6SHong Zhang 26326718818eSStefano Zampini C->product->data = atb; 26336718818eSStefano Zampini C->product->destroy = MatDestroy_MatTransMatMult_MPIDense_MPIDense; 2634cb20be35SHong Zhang PetscFunctionReturn(0); 2635cb20be35SHong Zhang } 2636cb20be35SHong Zhang 26374222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat A, Mat B, PetscReal fill, Mat C) 2638cb20be35SHong Zhang { 2639cb20be35SHong Zhang PetscErrorCode ierr; 2640cc48ffa7SToby Isaac MPI_Comm comm; 2641cc48ffa7SToby Isaac PetscMPIInt i, size; 2642cc48ffa7SToby Isaac PetscInt maxRows, bufsiz; 2643cc48ffa7SToby Isaac PetscMPIInt tag; 26444222ddf1SHong Zhang PetscInt alg; 2645cc48ffa7SToby Isaac Mat_MatTransMultDense *abt; 26464222ddf1SHong Zhang Mat_Product *product = C->product; 26474222ddf1SHong Zhang PetscBool flg; 2648cc48ffa7SToby Isaac 2649cc48ffa7SToby Isaac PetscFunctionBegin; 26506718818eSStefano Zampini MatCheckProduct(C,4); 26516718818eSStefano Zampini if (C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty"); 26524222ddf1SHong Zhang /* check local size of A and B */ 2653637a0070SStefano Zampini if (A->cmap->n != B->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local column dimensions are incompatible, A (%D) != B (%D)",A->cmap->n,B->cmap->n); 2654cc48ffa7SToby Isaac 26554222ddf1SHong Zhang ierr = PetscStrcmp(product->alg,"allgatherv",&flg);CHKERRQ(ierr); 2656637a0070SStefano Zampini alg = flg ? 0 : 1; 2657cc48ffa7SToby Isaac 26584222ddf1SHong Zhang /* setup matrix product C */ 26594222ddf1SHong Zhang ierr = MatSetSizes(C,A->rmap->n,B->rmap->n,A->rmap->N,B->rmap->N);CHKERRQ(ierr); 26604222ddf1SHong Zhang ierr = MatSetType(C,MATMPIDENSE);CHKERRQ(ierr); 266118992e5dSStefano Zampini ierr = MatSetUp(C);CHKERRQ(ierr); 26624222ddf1SHong Zhang ierr = PetscObjectGetNewTag((PetscObject)C,&tag);CHKERRQ(ierr); 26634222ddf1SHong Zhang ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 26644222ddf1SHong Zhang ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 26654222ddf1SHong Zhang 26664222ddf1SHong Zhang /* create data structure for reuse C */ 26674222ddf1SHong Zhang ierr = PetscObjectGetComm((PetscObject)C,&comm);CHKERRQ(ierr); 2668cc48ffa7SToby Isaac ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2669cc48ffa7SToby Isaac ierr = PetscNew(&abt);CHKERRQ(ierr); 2670cc48ffa7SToby Isaac abt->tag = tag; 2671faa55883SToby Isaac abt->alg = alg; 2672faa55883SToby Isaac switch (alg) { 26734222ddf1SHong Zhang case 1: /* alg: "cyclic" */ 2674cc48ffa7SToby Isaac for (maxRows = 0, i = 0; i < size; i++) maxRows = PetscMax(maxRows, (B->rmap->range[i + 1] - B->rmap->range[i])); 2675cc48ffa7SToby Isaac bufsiz = A->cmap->N * maxRows; 2676cc48ffa7SToby Isaac ierr = PetscMalloc2(bufsiz,&(abt->buf[0]),bufsiz,&(abt->buf[1]));CHKERRQ(ierr); 2677faa55883SToby Isaac break; 26784222ddf1SHong Zhang default: /* alg: "allgatherv" */ 2679faa55883SToby Isaac ierr = PetscMalloc2(B->rmap->n * B->cmap->N, &(abt->buf[0]), B->rmap->N * B->cmap->N, &(abt->buf[1]));CHKERRQ(ierr); 2680faa55883SToby Isaac ierr = PetscMalloc2(size,&(abt->recvcounts),size+1,&(abt->recvdispls));CHKERRQ(ierr); 2681faa55883SToby Isaac for (i = 0; i <= size; i++) abt->recvdispls[i] = B->rmap->range[i] * A->cmap->N; 2682faa55883SToby Isaac for (i = 0; i < size; i++) abt->recvcounts[i] = abt->recvdispls[i + 1] - abt->recvdispls[i]; 2683faa55883SToby Isaac break; 2684faa55883SToby Isaac } 2685cc48ffa7SToby Isaac 26866718818eSStefano Zampini C->product->data = abt; 26876718818eSStefano Zampini C->product->destroy = MatDestroy_MatMatTransMult_MPIDense_MPIDense; 26884222ddf1SHong Zhang C->ops->mattransposemultnumeric = MatMatTransposeMultNumeric_MPIDense_MPIDense; 2689cc48ffa7SToby Isaac PetscFunctionReturn(0); 2690cc48ffa7SToby Isaac } 2691cc48ffa7SToby Isaac 2692faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(Mat A, Mat B, Mat C) 2693cc48ffa7SToby Isaac { 2694cc48ffa7SToby Isaac Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 26956718818eSStefano Zampini Mat_MatTransMultDense *abt; 2696cc48ffa7SToby Isaac PetscErrorCode ierr; 2697cc48ffa7SToby Isaac MPI_Comm comm; 2698cc48ffa7SToby Isaac PetscMPIInt rank,size, sendsiz, recvsiz, sendto, recvfrom, recvisfrom; 2699637a0070SStefano Zampini PetscScalar *sendbuf, *recvbuf=0, *cv; 2700cc48ffa7SToby Isaac PetscInt i,cK=A->cmap->N,k,j,bn; 2701cc48ffa7SToby Isaac PetscScalar _DOne=1.0,_DZero=0.0; 2702637a0070SStefano Zampini const PetscScalar *av,*bv; 2703637a0070SStefano Zampini PetscBLASInt cm, cn, ck, alda, blda, clda; 2704cc48ffa7SToby Isaac MPI_Request reqs[2]; 2705cc48ffa7SToby Isaac const PetscInt *ranges; 2706cc48ffa7SToby Isaac 2707cc48ffa7SToby Isaac PetscFunctionBegin; 27086718818eSStefano Zampini MatCheckProduct(C,3); 27096718818eSStefano Zampini if (!C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 27106718818eSStefano Zampini abt = (Mat_MatTransMultDense*)C->product->data; 27116718818eSStefano Zampini ierr = PetscObjectGetComm((PetscObject)C,&comm);CHKERRQ(ierr); 2712cc48ffa7SToby Isaac ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 2713cc48ffa7SToby Isaac ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2714637a0070SStefano Zampini ierr = MatDenseGetArrayRead(a->A,&av);CHKERRQ(ierr); 2715637a0070SStefano Zampini ierr = MatDenseGetArrayRead(b->A,&bv);CHKERRQ(ierr); 2716637a0070SStefano Zampini ierr = MatDenseGetArray(c->A,&cv);CHKERRQ(ierr); 2717637a0070SStefano Zampini ierr = MatDenseGetLDA(a->A,&i);CHKERRQ(ierr); 2718637a0070SStefano Zampini ierr = PetscBLASIntCast(i,&alda);CHKERRQ(ierr); 2719637a0070SStefano Zampini ierr = MatDenseGetLDA(b->A,&i);CHKERRQ(ierr); 2720637a0070SStefano Zampini ierr = PetscBLASIntCast(i,&blda);CHKERRQ(ierr); 2721637a0070SStefano Zampini ierr = MatDenseGetLDA(c->A,&i);CHKERRQ(ierr); 2722637a0070SStefano Zampini ierr = PetscBLASIntCast(i,&clda);CHKERRQ(ierr); 2723cc48ffa7SToby Isaac ierr = MatGetOwnershipRanges(B,&ranges);CHKERRQ(ierr); 2724cc48ffa7SToby Isaac bn = B->rmap->n; 2725637a0070SStefano Zampini if (blda == bn) { 2726637a0070SStefano Zampini sendbuf = (PetscScalar*)bv; 2727cc48ffa7SToby Isaac } else { 2728cc48ffa7SToby Isaac sendbuf = abt->buf[0]; 2729cc48ffa7SToby Isaac for (k = 0, i = 0; i < cK; i++) { 2730cc48ffa7SToby Isaac for (j = 0; j < bn; j++, k++) { 2731637a0070SStefano Zampini sendbuf[k] = bv[i * blda + j]; 2732cc48ffa7SToby Isaac } 2733cc48ffa7SToby Isaac } 2734cc48ffa7SToby Isaac } 2735cc48ffa7SToby Isaac if (size > 1) { 2736cc48ffa7SToby Isaac sendto = (rank + size - 1) % size; 2737cc48ffa7SToby Isaac recvfrom = (rank + size + 1) % size; 2738cc48ffa7SToby Isaac } else { 2739cc48ffa7SToby Isaac sendto = recvfrom = 0; 2740cc48ffa7SToby Isaac } 2741cc48ffa7SToby Isaac ierr = PetscBLASIntCast(cK,&ck);CHKERRQ(ierr); 2742cc48ffa7SToby Isaac ierr = PetscBLASIntCast(c->A->rmap->n,&cm);CHKERRQ(ierr); 2743cc48ffa7SToby Isaac recvisfrom = rank; 2744cc48ffa7SToby Isaac for (i = 0; i < size; i++) { 2745cc48ffa7SToby Isaac /* we have finished receiving in sending, bufs can be read/modified */ 2746cc48ffa7SToby Isaac PetscInt nextrecvisfrom = (recvisfrom + 1) % size; /* which process the next recvbuf will originate on */ 2747cc48ffa7SToby Isaac PetscInt nextbn = ranges[nextrecvisfrom + 1] - ranges[nextrecvisfrom]; 2748cc48ffa7SToby Isaac 2749cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2750cc48ffa7SToby Isaac /* start the cyclic sends from sendbuf, to recvbuf (which will switch to sendbuf) */ 2751cc48ffa7SToby Isaac sendsiz = cK * bn; 2752cc48ffa7SToby Isaac recvsiz = cK * nextbn; 2753cc48ffa7SToby Isaac recvbuf = (i & 1) ? abt->buf[0] : abt->buf[1]; 2754cc48ffa7SToby Isaac ierr = MPI_Isend(sendbuf, sendsiz, MPIU_SCALAR, sendto, abt->tag, comm, &reqs[0]);CHKERRQ(ierr); 2755cc48ffa7SToby Isaac ierr = MPI_Irecv(recvbuf, recvsiz, MPIU_SCALAR, recvfrom, abt->tag, comm, &reqs[1]);CHKERRQ(ierr); 2756cc48ffa7SToby Isaac } 2757cc48ffa7SToby Isaac 2758cc48ffa7SToby Isaac /* local aseq * sendbuf^T */ 2759cc48ffa7SToby Isaac ierr = PetscBLASIntCast(ranges[recvisfrom + 1] - ranges[recvisfrom], &cn);CHKERRQ(ierr); 276050ce3c9cSStefano Zampini if (cm && cn && ck) PetscStackCallBLAS("BLASgemm",BLASgemm_("N","T",&cm,&cn,&ck,&_DOne,av,&alda,sendbuf,&cn,&_DZero,cv + clda * ranges[recvisfrom],&clda)); 2761cc48ffa7SToby Isaac 2762cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2763cc48ffa7SToby Isaac /* wait for the sends and receives to complete, swap sendbuf and recvbuf */ 2764cc48ffa7SToby Isaac ierr = MPI_Waitall(2, reqs, MPI_STATUSES_IGNORE);CHKERRQ(ierr); 2765cc48ffa7SToby Isaac } 2766cc48ffa7SToby Isaac bn = nextbn; 2767cc48ffa7SToby Isaac recvisfrom = nextrecvisfrom; 2768cc48ffa7SToby Isaac sendbuf = recvbuf; 2769cc48ffa7SToby Isaac } 2770637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(a->A,&av);CHKERRQ(ierr); 2771637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(b->A,&bv);CHKERRQ(ierr); 2772637a0070SStefano Zampini ierr = MatDenseRestoreArray(c->A,&cv);CHKERRQ(ierr); 2773cc48ffa7SToby Isaac PetscFunctionReturn(0); 2774cc48ffa7SToby Isaac } 2775cc48ffa7SToby Isaac 2776faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(Mat A, Mat B, Mat C) 2777faa55883SToby Isaac { 2778faa55883SToby Isaac Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 27796718818eSStefano Zampini Mat_MatTransMultDense *abt; 2780faa55883SToby Isaac PetscErrorCode ierr; 2781faa55883SToby Isaac MPI_Comm comm; 2782637a0070SStefano Zampini PetscMPIInt size; 2783637a0070SStefano Zampini PetscScalar *cv, *sendbuf, *recvbuf; 2784637a0070SStefano Zampini const PetscScalar *av,*bv; 2785637a0070SStefano Zampini PetscInt blda,i,cK=A->cmap->N,k,j,bn; 2786faa55883SToby Isaac PetscScalar _DOne=1.0,_DZero=0.0; 2787637a0070SStefano Zampini PetscBLASInt cm, cn, ck, alda, clda; 2788faa55883SToby Isaac 2789faa55883SToby Isaac PetscFunctionBegin; 27906718818eSStefano Zampini MatCheckProduct(C,3); 27916718818eSStefano Zampini if (!C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 27926718818eSStefano Zampini abt = (Mat_MatTransMultDense*)C->product->data; 2793faa55883SToby Isaac ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 2794faa55883SToby Isaac ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2795637a0070SStefano Zampini ierr = MatDenseGetArrayRead(a->A,&av);CHKERRQ(ierr); 2796637a0070SStefano Zampini ierr = MatDenseGetArrayRead(b->A,&bv);CHKERRQ(ierr); 2797637a0070SStefano Zampini ierr = MatDenseGetArray(c->A,&cv);CHKERRQ(ierr); 2798637a0070SStefano Zampini ierr = MatDenseGetLDA(a->A,&i);CHKERRQ(ierr); 2799637a0070SStefano Zampini ierr = PetscBLASIntCast(i,&alda);CHKERRQ(ierr); 2800637a0070SStefano Zampini ierr = MatDenseGetLDA(b->A,&blda);CHKERRQ(ierr); 2801637a0070SStefano Zampini ierr = MatDenseGetLDA(c->A,&i);CHKERRQ(ierr); 2802637a0070SStefano Zampini ierr = PetscBLASIntCast(i,&clda);CHKERRQ(ierr); 2803faa55883SToby Isaac /* copy transpose of B into buf[0] */ 2804faa55883SToby Isaac bn = B->rmap->n; 2805faa55883SToby Isaac sendbuf = abt->buf[0]; 2806faa55883SToby Isaac recvbuf = abt->buf[1]; 2807faa55883SToby Isaac for (k = 0, j = 0; j < bn; j++) { 2808faa55883SToby Isaac for (i = 0; i < cK; i++, k++) { 2809637a0070SStefano Zampini sendbuf[k] = bv[i * blda + j]; 2810faa55883SToby Isaac } 2811faa55883SToby Isaac } 2812637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(b->A,&bv);CHKERRQ(ierr); 2813faa55883SToby Isaac ierr = MPI_Allgatherv(sendbuf, bn * cK, MPIU_SCALAR, recvbuf, abt->recvcounts, abt->recvdispls, MPIU_SCALAR, comm);CHKERRQ(ierr); 2814faa55883SToby Isaac ierr = PetscBLASIntCast(cK,&ck);CHKERRQ(ierr); 2815faa55883SToby Isaac ierr = PetscBLASIntCast(c->A->rmap->n,&cm);CHKERRQ(ierr); 2816faa55883SToby Isaac ierr = PetscBLASIntCast(c->A->cmap->n,&cn);CHKERRQ(ierr); 281750ce3c9cSStefano Zampini if (cm && cn && ck) PetscStackCallBLAS("BLASgemm",BLASgemm_("N","N",&cm,&cn,&ck,&_DOne,av,&alda,recvbuf,&ck,&_DZero,cv,&clda)); 2818637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(a->A,&av);CHKERRQ(ierr); 2819637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(b->A,&bv);CHKERRQ(ierr); 2820637a0070SStefano Zampini ierr = MatDenseRestoreArray(c->A,&cv);CHKERRQ(ierr); 2821faa55883SToby Isaac PetscFunctionReturn(0); 2822faa55883SToby Isaac } 2823faa55883SToby Isaac 2824faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat A, Mat B, Mat C) 2825faa55883SToby Isaac { 28266718818eSStefano Zampini Mat_MatTransMultDense *abt; 2827faa55883SToby Isaac PetscErrorCode ierr; 2828faa55883SToby Isaac 2829faa55883SToby Isaac PetscFunctionBegin; 28306718818eSStefano Zampini MatCheckProduct(C,3); 28316718818eSStefano Zampini if (!C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 28326718818eSStefano Zampini abt = (Mat_MatTransMultDense*)C->product->data; 2833faa55883SToby Isaac switch (abt->alg) { 2834faa55883SToby Isaac case 1: 2835faa55883SToby Isaac ierr = MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(A, B, C);CHKERRQ(ierr); 2836faa55883SToby Isaac break; 2837faa55883SToby Isaac default: 2838faa55883SToby Isaac ierr = MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(A, B, C);CHKERRQ(ierr); 2839faa55883SToby Isaac break; 2840faa55883SToby Isaac } 2841faa55883SToby Isaac PetscFunctionReturn(0); 2842faa55883SToby Isaac } 2843faa55883SToby Isaac 28446718818eSStefano Zampini PetscErrorCode MatDestroy_MatMatMult_MPIDense_MPIDense(void *data) 2845320f2790SHong Zhang { 2846320f2790SHong Zhang PetscErrorCode ierr; 28476718818eSStefano Zampini Mat_MatMultDense *ab = (Mat_MatMultDense*)data; 2848320f2790SHong Zhang 2849320f2790SHong Zhang PetscFunctionBegin; 2850320f2790SHong Zhang ierr = MatDestroy(&ab->Ce);CHKERRQ(ierr); 2851320f2790SHong Zhang ierr = MatDestroy(&ab->Ae);CHKERRQ(ierr); 2852320f2790SHong Zhang ierr = MatDestroy(&ab->Be);CHKERRQ(ierr); 2853320f2790SHong Zhang ierr = PetscFree(ab);CHKERRQ(ierr); 2854320f2790SHong Zhang PetscFunctionReturn(0); 2855320f2790SHong Zhang } 2856320f2790SHong Zhang 28575242a7b1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 2858320f2790SHong Zhang PetscErrorCode MatMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 2859320f2790SHong Zhang { 2860320f2790SHong Zhang PetscErrorCode ierr; 28616718818eSStefano Zampini Mat_MatMultDense *ab; 2862320f2790SHong Zhang 2863320f2790SHong Zhang PetscFunctionBegin; 28646718818eSStefano Zampini MatCheckProduct(C,3); 28656718818eSStefano Zampini if (!C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Missing product data"); 28666718818eSStefano Zampini ab = (Mat_MatMultDense*)C->product->data; 2867de0a22f0SHong Zhang ierr = MatConvert_MPIDense_Elemental(A,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Ae);CHKERRQ(ierr); 2868de0a22f0SHong Zhang ierr = MatConvert_MPIDense_Elemental(B,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Be);CHKERRQ(ierr); 28694222ddf1SHong Zhang ierr = MatMatMultNumeric_Elemental(ab->Ae,ab->Be,ab->Ce);CHKERRQ(ierr); 2870de0a22f0SHong Zhang ierr = MatConvert(ab->Ce,MATMPIDENSE,MAT_REUSE_MATRIX,&C);CHKERRQ(ierr); 2871320f2790SHong Zhang PetscFunctionReturn(0); 2872320f2790SHong Zhang } 2873320f2790SHong Zhang 28746718818eSStefano Zampini static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat C) 2875320f2790SHong Zhang { 2876320f2790SHong Zhang PetscErrorCode ierr; 2877320f2790SHong Zhang Mat Ae,Be,Ce; 2878320f2790SHong Zhang Mat_MatMultDense *ab; 2879320f2790SHong Zhang 2880320f2790SHong Zhang PetscFunctionBegin; 28816718818eSStefano Zampini MatCheckProduct(C,4); 28826718818eSStefano Zampini if (C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty"); 28834222ddf1SHong Zhang /* check local size of A and B */ 2884320f2790SHong Zhang if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend) { 2885378336b6SHong Zhang SETERRQ4(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != B (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 2886320f2790SHong Zhang } 2887320f2790SHong Zhang 28884222ddf1SHong Zhang /* create elemental matrices Ae and Be */ 28894222ddf1SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)A), &Ae);CHKERRQ(ierr); 28904222ddf1SHong Zhang ierr = MatSetSizes(Ae,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 28914222ddf1SHong Zhang ierr = MatSetType(Ae,MATELEMENTAL);CHKERRQ(ierr); 28924222ddf1SHong Zhang ierr = MatSetUp(Ae);CHKERRQ(ierr); 28934222ddf1SHong Zhang ierr = MatSetOption(Ae,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 2894320f2790SHong Zhang 28954222ddf1SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)B), &Be);CHKERRQ(ierr); 28964222ddf1SHong Zhang ierr = MatSetSizes(Be,PETSC_DECIDE,PETSC_DECIDE,B->rmap->N,B->cmap->N);CHKERRQ(ierr); 28974222ddf1SHong Zhang ierr = MatSetType(Be,MATELEMENTAL);CHKERRQ(ierr); 28984222ddf1SHong Zhang ierr = MatSetUp(Be);CHKERRQ(ierr); 28994222ddf1SHong Zhang ierr = MatSetOption(Be,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 2900320f2790SHong Zhang 29014222ddf1SHong Zhang /* compute symbolic Ce = Ae*Be */ 29024222ddf1SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)C),&Ce);CHKERRQ(ierr); 29034222ddf1SHong Zhang ierr = MatMatMultSymbolic_Elemental(Ae,Be,fill,Ce);CHKERRQ(ierr); 29044222ddf1SHong Zhang 29054222ddf1SHong Zhang /* setup C */ 29064222ddf1SHong Zhang ierr = MatSetSizes(C,A->rmap->n,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 29074222ddf1SHong Zhang ierr = MatSetType(C,MATDENSE);CHKERRQ(ierr); 29084222ddf1SHong Zhang ierr = MatSetUp(C);CHKERRQ(ierr); 2909320f2790SHong Zhang 2910320f2790SHong Zhang /* create data structure for reuse Cdense */ 2911320f2790SHong Zhang ierr = PetscNew(&ab);CHKERRQ(ierr); 2912320f2790SHong Zhang ab->Ae = Ae; 2913320f2790SHong Zhang ab->Be = Be; 2914320f2790SHong Zhang ab->Ce = Ce; 29156718818eSStefano Zampini 29166718818eSStefano Zampini C->product->data = ab; 29176718818eSStefano Zampini C->product->destroy = MatDestroy_MatMatMult_MPIDense_MPIDense; 29184222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIDense; 2919320f2790SHong Zhang PetscFunctionReturn(0); 2920320f2790SHong Zhang } 29214222ddf1SHong Zhang #endif 29224222ddf1SHong Zhang /* ----------------------------------------------- */ 29234222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 29244222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_AB(Mat C) 2925320f2790SHong Zhang { 2926320f2790SHong Zhang PetscFunctionBegin; 29274222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIDense; 29284222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 2929320f2790SHong Zhang PetscFunctionReturn(0); 2930320f2790SHong Zhang } 29315242a7b1SHong Zhang #endif 293286aefd0dSHong Zhang 29334222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_AtB(Mat C) 29344222ddf1SHong Zhang { 29354222ddf1SHong Zhang Mat_Product *product = C->product; 29364222ddf1SHong Zhang Mat A = product->A,B=product->B; 29374222ddf1SHong Zhang 29384222ddf1SHong Zhang PetscFunctionBegin; 29394222ddf1SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) 29404222ddf1SHong Zhang SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, (%D, %D) != (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 29416718818eSStefano Zampini C->ops->transposematmultsymbolic = MatTransposeMatMultSymbolic_MPIDense_MPIDense; 29426718818eSStefano Zampini C->ops->productsymbolic = MatProductSymbolic_AtB; 29434222ddf1SHong Zhang PetscFunctionReturn(0); 29444222ddf1SHong Zhang } 29454222ddf1SHong Zhang 29464222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_ABt(Mat C) 29474222ddf1SHong Zhang { 29484222ddf1SHong Zhang PetscErrorCode ierr; 29494222ddf1SHong Zhang Mat_Product *product = C->product; 29504222ddf1SHong Zhang const char *algTypes[2] = {"allgatherv","cyclic"}; 29514222ddf1SHong Zhang PetscInt alg,nalg = 2; 29524222ddf1SHong Zhang PetscBool flg = PETSC_FALSE; 29534222ddf1SHong Zhang 29544222ddf1SHong Zhang PetscFunctionBegin; 29554222ddf1SHong Zhang /* Set default algorithm */ 29564222ddf1SHong Zhang alg = 0; /* default is allgatherv */ 29574222ddf1SHong Zhang ierr = PetscStrcmp(product->alg,"default",&flg);CHKERRQ(ierr); 29584222ddf1SHong Zhang if (flg) { 29594222ddf1SHong Zhang ierr = MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]);CHKERRQ(ierr); 29604222ddf1SHong Zhang } 29614222ddf1SHong Zhang 29624222ddf1SHong Zhang /* Get runtime option */ 29634222ddf1SHong Zhang if (product->api_user) { 29644222ddf1SHong Zhang ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatMatTransposeMult","Mat");CHKERRQ(ierr); 29654222ddf1SHong Zhang ierr = PetscOptionsEList("-matmattransmult_mpidense_mpidense_via","Algorithmic approach","MatMatTransposeMult",algTypes,nalg,algTypes[alg],&alg,&flg);CHKERRQ(ierr); 29664222ddf1SHong Zhang ierr = PetscOptionsEnd();CHKERRQ(ierr); 29674222ddf1SHong Zhang } else { 29684222ddf1SHong Zhang ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatProduct_ABt","Mat");CHKERRQ(ierr); 29694222ddf1SHong Zhang ierr = PetscOptionsEList("-matproduct_abt_mpidense_mpidense_via","Algorithmic approach","MatProduct_ABt",algTypes,nalg,algTypes[alg],&alg,&flg);CHKERRQ(ierr); 29704222ddf1SHong Zhang ierr = PetscOptionsEnd();CHKERRQ(ierr); 29714222ddf1SHong Zhang } 29724222ddf1SHong Zhang if (flg) { 29734222ddf1SHong Zhang ierr = MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]);CHKERRQ(ierr); 29744222ddf1SHong Zhang } 29754222ddf1SHong Zhang 29764222ddf1SHong Zhang C->ops->mattransposemultsymbolic = MatMatTransposeMultSymbolic_MPIDense_MPIDense; 29774222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_ABt; 29784222ddf1SHong Zhang PetscFunctionReturn(0); 29794222ddf1SHong Zhang } 29804222ddf1SHong Zhang 29814222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense(Mat C) 29824222ddf1SHong Zhang { 29834222ddf1SHong Zhang PetscErrorCode ierr; 29844222ddf1SHong Zhang Mat_Product *product = C->product; 29854222ddf1SHong Zhang 29864222ddf1SHong Zhang PetscFunctionBegin; 29874222ddf1SHong Zhang switch (product->type) { 29884222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 29894222ddf1SHong Zhang case MATPRODUCT_AB: 29904222ddf1SHong Zhang ierr = MatProductSetFromOptions_MPIDense_AB(C);CHKERRQ(ierr); 29914222ddf1SHong Zhang break; 29924222ddf1SHong Zhang #endif 29934222ddf1SHong Zhang case MATPRODUCT_AtB: 29944222ddf1SHong Zhang ierr = MatProductSetFromOptions_MPIDense_AtB(C);CHKERRQ(ierr); 29954222ddf1SHong Zhang break; 29964222ddf1SHong Zhang case MATPRODUCT_ABt: 29974222ddf1SHong Zhang ierr = MatProductSetFromOptions_MPIDense_ABt(C);CHKERRQ(ierr); 29984222ddf1SHong Zhang break; 29996718818eSStefano Zampini default: 30006718818eSStefano Zampini break; 30014222ddf1SHong Zhang } 30024222ddf1SHong Zhang PetscFunctionReturn(0); 30034222ddf1SHong Zhang } 3004