1be1d678aSKris Buschelman 2ed3cc1f0SBarry Smith /* 3ed3cc1f0SBarry Smith Basic functions for basic parallel dense matrices. 4ed3cc1f0SBarry Smith */ 5ed3cc1f0SBarry Smith 6c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h> /*I "petscmat.h" I*/ 78949adfdSHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 8baa3c1c6SHong Zhang #include <petscblaslapack.h> 98965ea79SLois Curfman McInnes 10ab92ecdeSBarry Smith /*@ 11ab92ecdeSBarry Smith 12ab92ecdeSBarry Smith MatDenseGetLocalMatrix - For a MATMPIDENSE or MATSEQDENSE matrix returns the sequential 13ab92ecdeSBarry Smith matrix that represents the operator. For sequential matrices it returns itself. 14ab92ecdeSBarry Smith 15ab92ecdeSBarry Smith Input Parameter: 16ab92ecdeSBarry Smith . A - the Seq or MPI dense matrix 17ab92ecdeSBarry Smith 18ab92ecdeSBarry Smith Output Parameter: 19ab92ecdeSBarry Smith . B - the inner matrix 20ab92ecdeSBarry Smith 218e6c10adSSatish Balay Level: intermediate 228e6c10adSSatish Balay 23ab92ecdeSBarry Smith @*/ 24ab92ecdeSBarry Smith PetscErrorCode MatDenseGetLocalMatrix(Mat A,Mat *B) 25ab92ecdeSBarry Smith { 26ab92ecdeSBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 27ab92ecdeSBarry Smith PetscErrorCode ierr; 28ace3abfcSBarry Smith PetscBool flg; 29ab92ecdeSBarry Smith 30ab92ecdeSBarry Smith PetscFunctionBegin; 31251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIDENSE,&flg);CHKERRQ(ierr); 322205254eSKarl Rupp if (flg) *B = mat->A; 332205254eSKarl Rupp else *B = A; 34ab92ecdeSBarry Smith PetscFunctionReturn(0); 35ab92ecdeSBarry Smith } 36ab92ecdeSBarry Smith 37ba8c8a56SBarry Smith PetscErrorCode MatGetRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 38ba8c8a56SBarry Smith { 39ba8c8a56SBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 40ba8c8a56SBarry Smith PetscErrorCode ierr; 41d0f46423SBarry Smith PetscInt lrow,rstart = A->rmap->rstart,rend = A->rmap->rend; 42ba8c8a56SBarry Smith 43ba8c8a56SBarry Smith PetscFunctionBegin; 44e7e72b3dSBarry Smith if (row < rstart || row >= rend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows"); 45ba8c8a56SBarry Smith lrow = row - rstart; 46ba8c8a56SBarry Smith ierr = MatGetRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v);CHKERRQ(ierr); 47ba8c8a56SBarry Smith PetscFunctionReturn(0); 48ba8c8a56SBarry Smith } 49ba8c8a56SBarry Smith 50*637a0070SStefano Zampini PetscErrorCode MatRestoreRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 51ba8c8a56SBarry Smith { 52*637a0070SStefano Zampini Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 53ba8c8a56SBarry Smith PetscErrorCode ierr; 54*637a0070SStefano Zampini PetscInt lrow,rstart = A->rmap->rstart,rend = A->rmap->rend; 55ba8c8a56SBarry Smith 56ba8c8a56SBarry Smith PetscFunctionBegin; 57*637a0070SStefano Zampini if (row < rstart || row >= rend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows"); 58*637a0070SStefano Zampini lrow = row - rstart; 59*637a0070SStefano Zampini ierr = MatRestoreRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v);CHKERRQ(ierr); 60ba8c8a56SBarry Smith PetscFunctionReturn(0); 61ba8c8a56SBarry Smith } 62ba8c8a56SBarry Smith 6311bd1e4dSLisandro Dalcin PetscErrorCode MatGetDiagonalBlock_MPIDense(Mat A,Mat *a) 640de54da6SSatish Balay { 650de54da6SSatish Balay Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 666849ba73SBarry Smith PetscErrorCode ierr; 67d0f46423SBarry Smith PetscInt m = A->rmap->n,rstart = A->rmap->rstart; 6887828ca2SBarry Smith PetscScalar *array; 690de54da6SSatish Balay MPI_Comm comm; 70*637a0070SStefano Zampini PetscBool cong; 7111bd1e4dSLisandro Dalcin Mat B; 720de54da6SSatish Balay 730de54da6SSatish Balay PetscFunctionBegin; 74*637a0070SStefano Zampini ierr = MatHasCongruentLayouts(A,&cong);CHKERRQ(ierr); 75*637a0070SStefano Zampini if (!cong) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only square matrices supported."); 7611bd1e4dSLisandro Dalcin ierr = PetscObjectQuery((PetscObject)A,"DiagonalBlock",(PetscObject*)&B);CHKERRQ(ierr); 7711bd1e4dSLisandro Dalcin if (!B) { 780de54da6SSatish Balay ierr = PetscObjectGetComm((PetscObject)(mdn->A),&comm);CHKERRQ(ierr); 7911bd1e4dSLisandro Dalcin ierr = MatCreate(comm,&B);CHKERRQ(ierr); 8011bd1e4dSLisandro Dalcin ierr = MatSetSizes(B,m,m,m,m);CHKERRQ(ierr); 8111bd1e4dSLisandro Dalcin ierr = MatSetType(B,((PetscObject)mdn->A)->type_name);CHKERRQ(ierr); 828c778c55SBarry Smith ierr = MatDenseGetArray(mdn->A,&array);CHKERRQ(ierr); 8311bd1e4dSLisandro Dalcin ierr = MatSeqDenseSetPreallocation(B,array+m*rstart);CHKERRQ(ierr); 848c778c55SBarry Smith ierr = MatDenseRestoreArray(mdn->A,&array);CHKERRQ(ierr); 8511bd1e4dSLisandro Dalcin ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 8611bd1e4dSLisandro Dalcin ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 8711bd1e4dSLisandro Dalcin ierr = PetscObjectCompose((PetscObject)A,"DiagonalBlock",(PetscObject)B);CHKERRQ(ierr); 8811bd1e4dSLisandro Dalcin *a = B; 8911bd1e4dSLisandro Dalcin ierr = MatDestroy(&B);CHKERRQ(ierr); 902205254eSKarl Rupp } else *a = B; 910de54da6SSatish Balay PetscFunctionReturn(0); 920de54da6SSatish Balay } 930de54da6SSatish Balay 9413f74950SBarry Smith PetscErrorCode MatSetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],const PetscScalar v[],InsertMode addv) 958965ea79SLois Curfman McInnes { 9639b7565bSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)mat->data; 97dfbe8321SBarry Smith PetscErrorCode ierr; 98d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 99ace3abfcSBarry Smith PetscBool roworiented = A->roworiented; 1008965ea79SLois Curfman McInnes 1013a40ed3dSBarry Smith PetscFunctionBegin; 1028965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 1035ef9f2a5SBarry Smith if (idxm[i] < 0) continue; 104e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 1058965ea79SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 1068965ea79SLois Curfman McInnes row = idxm[i] - rstart; 10739b7565bSBarry Smith if (roworiented) { 10839b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv);CHKERRQ(ierr); 1093a40ed3dSBarry Smith } else { 1108965ea79SLois Curfman McInnes for (j=0; j<n; j++) { 1115ef9f2a5SBarry Smith if (idxn[j] < 0) continue; 112e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 11339b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv);CHKERRQ(ierr); 11439b7565bSBarry Smith } 1158965ea79SLois Curfman McInnes } 1162205254eSKarl Rupp } else if (!A->donotstash) { 1175080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 11839b7565bSBarry Smith if (roworiented) { 119b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,idxm[i],n,idxn,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 120d36fbae8SSatish Balay } else { 121b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,idxm[i],n,idxn,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 12239b7565bSBarry Smith } 123b49de8d1SLois Curfman McInnes } 124b49de8d1SLois Curfman McInnes } 1253a40ed3dSBarry Smith PetscFunctionReturn(0); 126b49de8d1SLois Curfman McInnes } 127b49de8d1SLois Curfman McInnes 12813f74950SBarry Smith PetscErrorCode MatGetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 129b49de8d1SLois Curfman McInnes { 130b49de8d1SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 131dfbe8321SBarry Smith PetscErrorCode ierr; 132d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 133b49de8d1SLois Curfman McInnes 1343a40ed3dSBarry Smith PetscFunctionBegin; 135b49de8d1SLois Curfman McInnes for (i=0; i<m; i++) { 136e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); */ 137e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 138b49de8d1SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 139b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 140b49de8d1SLois Curfman McInnes for (j=0; j<n; j++) { 141e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); */ 142e7e72b3dSBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 143b49de8d1SLois Curfman McInnes ierr = MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j);CHKERRQ(ierr); 144b49de8d1SLois Curfman McInnes } 145e7e72b3dSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 1468965ea79SLois Curfman McInnes } 1473a40ed3dSBarry Smith PetscFunctionReturn(0); 1488965ea79SLois Curfman McInnes } 1498965ea79SLois Curfman McInnes 15049a6ff4bSBarry Smith static PetscErrorCode MatDenseGetLDA_MPIDense(Mat A,PetscInt *lda) 15149a6ff4bSBarry Smith { 15249a6ff4bSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 15349a6ff4bSBarry Smith PetscErrorCode ierr; 15449a6ff4bSBarry Smith 15549a6ff4bSBarry Smith PetscFunctionBegin; 15649a6ff4bSBarry Smith ierr = MatDenseGetLDA(a->A,lda);CHKERRQ(ierr); 15749a6ff4bSBarry Smith PetscFunctionReturn(0); 15849a6ff4bSBarry Smith } 15949a6ff4bSBarry Smith 160*637a0070SStefano Zampini static PetscErrorCode MatDenseGetArray_MPIDense(Mat A,PetscScalar **array) 161ff14e315SSatish Balay { 162ff14e315SSatish Balay Mat_MPIDense *a = (Mat_MPIDense*)A->data; 163dfbe8321SBarry Smith PetscErrorCode ierr; 164ff14e315SSatish Balay 1653a40ed3dSBarry Smith PetscFunctionBegin; 1668c778c55SBarry Smith ierr = MatDenseGetArray(a->A,array);CHKERRQ(ierr); 1673a40ed3dSBarry Smith PetscFunctionReturn(0); 168ff14e315SSatish Balay } 169ff14e315SSatish Balay 170*637a0070SStefano Zampini static PetscErrorCode MatDenseGetArrayRead_MPIDense(Mat A,const PetscScalar **array) 1718572280aSBarry Smith { 1728572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1738572280aSBarry Smith PetscErrorCode ierr; 1748572280aSBarry Smith 1758572280aSBarry Smith PetscFunctionBegin; 1768572280aSBarry Smith ierr = MatDenseGetArrayRead(a->A,array);CHKERRQ(ierr); 1778572280aSBarry Smith PetscFunctionReturn(0); 1788572280aSBarry Smith } 1798572280aSBarry Smith 180*637a0070SStefano Zampini static PetscErrorCode MatDensePlaceArray_MPIDense(Mat A,const PetscScalar *array) 181d3042a70SBarry Smith { 182d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 183d3042a70SBarry Smith PetscErrorCode ierr; 184d3042a70SBarry Smith 185d3042a70SBarry Smith PetscFunctionBegin; 186d3042a70SBarry Smith ierr = MatDensePlaceArray(a->A,array);CHKERRQ(ierr); 187d3042a70SBarry Smith PetscFunctionReturn(0); 188d3042a70SBarry Smith } 189d3042a70SBarry Smith 190d3042a70SBarry Smith static PetscErrorCode MatDenseResetArray_MPIDense(Mat A) 191d3042a70SBarry Smith { 192d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 193d3042a70SBarry Smith PetscErrorCode ierr; 194d3042a70SBarry Smith 195d3042a70SBarry Smith PetscFunctionBegin; 196d3042a70SBarry Smith ierr = MatDenseResetArray(a->A);CHKERRQ(ierr); 197d3042a70SBarry Smith PetscFunctionReturn(0); 198d3042a70SBarry Smith } 199d3042a70SBarry Smith 2007dae84e0SHong Zhang static PetscErrorCode MatCreateSubMatrix_MPIDense(Mat A,IS isrow,IS iscol,MatReuse scall,Mat *B) 201ca3fa75bSLois Curfman McInnes { 202ca3fa75bSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data,*newmatd; 2036849ba73SBarry Smith PetscErrorCode ierr; 204*637a0070SStefano Zampini PetscInt lda,i,j,rstart,rend,nrows,ncols,Ncols,nlrows,nlcols; 2055d0c19d7SBarry Smith const PetscInt *irow,*icol; 206*637a0070SStefano Zampini const PetscScalar *v; 207*637a0070SStefano Zampini PetscScalar *bv; 208ca3fa75bSLois Curfman McInnes Mat newmat; 2094aa3045dSJed Brown IS iscol_local; 21042a884f0SBarry Smith MPI_Comm comm_is,comm_mat; 211ca3fa75bSLois Curfman McInnes 212ca3fa75bSLois Curfman McInnes PetscFunctionBegin; 21342a884f0SBarry Smith ierr = PetscObjectGetComm((PetscObject)A,&comm_mat);CHKERRQ(ierr); 21442a884f0SBarry Smith ierr = PetscObjectGetComm((PetscObject)iscol,&comm_is);CHKERRQ(ierr); 21542a884f0SBarry Smith if (comm_mat != comm_is) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NOTSAMECOMM,"IS communicator must match matrix communicator"); 21642a884f0SBarry Smith 2174aa3045dSJed Brown ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 218ca3fa75bSLois Curfman McInnes ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr); 2194aa3045dSJed Brown ierr = ISGetIndices(iscol_local,&icol);CHKERRQ(ierr); 220b9b97703SBarry Smith ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr); 221b9b97703SBarry Smith ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr); 2224aa3045dSJed Brown ierr = ISGetSize(iscol,&Ncols);CHKERRQ(ierr); /* global number of columns, size of iscol_local */ 223ca3fa75bSLois Curfman McInnes 224ca3fa75bSLois Curfman McInnes /* No parallel redistribution currently supported! Should really check each index set 2257eba5e9cSLois Curfman McInnes to comfirm that it is OK. ... Currently supports only submatrix same partitioning as 2267eba5e9cSLois Curfman McInnes original matrix! */ 227ca3fa75bSLois Curfman McInnes 228ca3fa75bSLois Curfman McInnes ierr = MatGetLocalSize(A,&nlrows,&nlcols);CHKERRQ(ierr); 2297eba5e9cSLois Curfman McInnes ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr); 230ca3fa75bSLois Curfman McInnes 231ca3fa75bSLois Curfman McInnes /* Check submatrix call */ 232ca3fa75bSLois Curfman McInnes if (scall == MAT_REUSE_MATRIX) { 233e32f2f54SBarry Smith /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */ 2347eba5e9cSLois Curfman McInnes /* Really need to test rows and column sizes! */ 235ca3fa75bSLois Curfman McInnes newmat = *B; 236ca3fa75bSLois Curfman McInnes } else { 237ca3fa75bSLois Curfman McInnes /* Create and fill new matrix */ 238ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&newmat);CHKERRQ(ierr); 2394aa3045dSJed Brown ierr = MatSetSizes(newmat,nrows,ncols,PETSC_DECIDE,Ncols);CHKERRQ(ierr); 2407adad957SLisandro Dalcin ierr = MatSetType(newmat,((PetscObject)A)->type_name);CHKERRQ(ierr); 2410298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr); 242ca3fa75bSLois Curfman McInnes } 243ca3fa75bSLois Curfman McInnes 244ca3fa75bSLois Curfman McInnes /* Now extract the data pointers and do the copy, column at a time */ 245ca3fa75bSLois Curfman McInnes newmatd = (Mat_MPIDense*)newmat->data; 246*637a0070SStefano Zampini ierr = MatDenseGetArray(newmatd->A,&bv);CHKERRQ(ierr); 247*637a0070SStefano Zampini ierr = MatDenseGetArrayRead(mat->A,&v);CHKERRQ(ierr); 248*637a0070SStefano Zampini ierr = MatDenseGetLDA(mat->A,&lda);CHKERRQ(ierr); 2494aa3045dSJed Brown for (i=0; i<Ncols; i++) { 250*637a0070SStefano Zampini const PetscScalar *av = v + lda*icol[i]; 251ca3fa75bSLois Curfman McInnes for (j=0; j<nrows; j++) { 2527eba5e9cSLois Curfman McInnes *bv++ = av[irow[j] - rstart]; 253ca3fa75bSLois Curfman McInnes } 254ca3fa75bSLois Curfman McInnes } 255*637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(mat->A,&v);CHKERRQ(ierr); 256*637a0070SStefano Zampini ierr = MatDenseRestoreArray(newmatd->A,&bv);CHKERRQ(ierr); 257ca3fa75bSLois Curfman McInnes 258ca3fa75bSLois Curfman McInnes /* Assemble the matrices so that the correct flags are set */ 259ca3fa75bSLois Curfman McInnes ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 260ca3fa75bSLois Curfman McInnes ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 261ca3fa75bSLois Curfman McInnes 262ca3fa75bSLois Curfman McInnes /* Free work space */ 263ca3fa75bSLois Curfman McInnes ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr); 2645bdf786aSShri Abhyankar ierr = ISRestoreIndices(iscol_local,&icol);CHKERRQ(ierr); 26532bb1f2dSLisandro Dalcin ierr = ISDestroy(&iscol_local);CHKERRQ(ierr); 266ca3fa75bSLois Curfman McInnes *B = newmat; 267ca3fa75bSLois Curfman McInnes PetscFunctionReturn(0); 268ca3fa75bSLois Curfman McInnes } 269ca3fa75bSLois Curfman McInnes 270*637a0070SStefano Zampini PetscErrorCode MatDenseRestoreArray_MPIDense(Mat A,PetscScalar **array) 271ff14e315SSatish Balay { 27273a71a0fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 27373a71a0fSBarry Smith PetscErrorCode ierr; 27473a71a0fSBarry Smith 2753a40ed3dSBarry Smith PetscFunctionBegin; 2768c778c55SBarry Smith ierr = MatDenseRestoreArray(a->A,array);CHKERRQ(ierr); 2773a40ed3dSBarry Smith PetscFunctionReturn(0); 278ff14e315SSatish Balay } 279ff14e315SSatish Balay 280*637a0070SStefano Zampini PetscErrorCode MatDenseRestoreArrayRead_MPIDense(Mat A,const PetscScalar **array) 2818572280aSBarry Smith { 2828572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 2838572280aSBarry Smith PetscErrorCode ierr; 2848572280aSBarry Smith 2858572280aSBarry Smith PetscFunctionBegin; 2868572280aSBarry Smith ierr = MatDenseRestoreArrayRead(a->A,array);CHKERRQ(ierr); 2878572280aSBarry Smith PetscFunctionReturn(0); 2888572280aSBarry Smith } 2898572280aSBarry Smith 290dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode) 2918965ea79SLois Curfman McInnes { 29239ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 293dfbe8321SBarry Smith PetscErrorCode ierr; 29413f74950SBarry Smith PetscInt nstash,reallocs; 2958965ea79SLois Curfman McInnes 2963a40ed3dSBarry Smith PetscFunctionBegin; 297910cf402Sprj- if (mdn->donotstash || mat->nooffprocentries) return(0); 2988965ea79SLois Curfman McInnes 299d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 3008798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 301ae15b995SBarry Smith ierr = PetscInfo2(mdn->A,"Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 3023a40ed3dSBarry Smith PetscFunctionReturn(0); 3038965ea79SLois Curfman McInnes } 3048965ea79SLois Curfman McInnes 305dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode) 3068965ea79SLois Curfman McInnes { 30739ddd567SLois Curfman McInnes Mat_MPIDense *mdn=(Mat_MPIDense*)mat->data; 3086849ba73SBarry Smith PetscErrorCode ierr; 30913f74950SBarry Smith PetscInt i,*row,*col,flg,j,rstart,ncols; 31013f74950SBarry Smith PetscMPIInt n; 31187828ca2SBarry Smith PetscScalar *val; 3128965ea79SLois Curfman McInnes 3133a40ed3dSBarry Smith PetscFunctionBegin; 314910cf402Sprj- if (!mdn->donotstash && !mat->nooffprocentries) { 3158965ea79SLois Curfman McInnes /* wait on receives */ 3167ef1d9bdSSatish Balay while (1) { 3178798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 3187ef1d9bdSSatish Balay if (!flg) break; 3198965ea79SLois Curfman McInnes 3207ef1d9bdSSatish Balay for (i=0; i<n;) { 3217ef1d9bdSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 3222205254eSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 3232205254eSKarl Rupp if (row[j] != rstart) break; 3242205254eSKarl Rupp } 3257ef1d9bdSSatish Balay if (j < n) ncols = j-i; 3267ef1d9bdSSatish Balay else ncols = n-i; 3277ef1d9bdSSatish Balay /* Now assemble all these values with a single function call */ 3284b4eb8d3SJed Brown ierr = MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr); 3297ef1d9bdSSatish Balay i = j; 3308965ea79SLois Curfman McInnes } 3317ef1d9bdSSatish Balay } 3328798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 333910cf402Sprj- } 3348965ea79SLois Curfman McInnes 33539ddd567SLois Curfman McInnes ierr = MatAssemblyBegin(mdn->A,mode);CHKERRQ(ierr); 33639ddd567SLois Curfman McInnes ierr = MatAssemblyEnd(mdn->A,mode);CHKERRQ(ierr); 3378965ea79SLois Curfman McInnes 3386d4a8577SBarry Smith if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 33939ddd567SLois Curfman McInnes ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 3408965ea79SLois Curfman McInnes } 3413a40ed3dSBarry Smith PetscFunctionReturn(0); 3428965ea79SLois Curfman McInnes } 3438965ea79SLois Curfman McInnes 344dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIDense(Mat A) 3458965ea79SLois Curfman McInnes { 346dfbe8321SBarry Smith PetscErrorCode ierr; 34739ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 3483a40ed3dSBarry Smith 3493a40ed3dSBarry Smith PetscFunctionBegin; 3503a40ed3dSBarry Smith ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 3513a40ed3dSBarry Smith PetscFunctionReturn(0); 3528965ea79SLois Curfman McInnes } 3538965ea79SLois Curfman McInnes 354*637a0070SStefano Zampini PetscErrorCode MatZeroRows_MPIDense(Mat A,PetscInt n,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 3558965ea79SLois Curfman McInnes { 35639ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 3576849ba73SBarry Smith PetscErrorCode ierr; 358*637a0070SStefano Zampini PetscInt i,len,*lrows; 359*637a0070SStefano Zampini 360*637a0070SStefano Zampini PetscFunctionBegin; 361*637a0070SStefano Zampini /* get locally owned rows */ 362*637a0070SStefano Zampini ierr = PetscLayoutMapLocal(A->rmap,n,rows,&len,&lrows,NULL);CHKERRQ(ierr); 363*637a0070SStefano Zampini /* fix right hand side if needed */ 364*637a0070SStefano Zampini if (x && b) { 36597b48c8fSBarry Smith const PetscScalar *xx; 36697b48c8fSBarry Smith PetscScalar *bb; 3678965ea79SLois Curfman McInnes 36897b48c8fSBarry Smith ierr = VecGetArrayRead(x, &xx);CHKERRQ(ierr); 369*637a0070SStefano Zampini ierr = VecGetArrayWrite(b, &bb);CHKERRQ(ierr); 370*637a0070SStefano Zampini for (i=0;i<len;++i) bb[lrows[i]] = diag*xx[lrows[i]]; 37197b48c8fSBarry Smith ierr = VecRestoreArrayRead(x, &xx);CHKERRQ(ierr); 372*637a0070SStefano Zampini ierr = VecRestoreArrayWrite(b, &bb);CHKERRQ(ierr); 37397b48c8fSBarry Smith } 374*637a0070SStefano Zampini ierr = MatZeroRows(l->A,len,lrows,0.0,NULL,NULL);CHKERRQ(ierr); 375e2eb51b1SBarry Smith if (diag != 0.0) { 376*637a0070SStefano Zampini Vec d; 377b9679d65SBarry Smith 378*637a0070SStefano Zampini ierr = MatCreateVecs(A,NULL,&d);CHKERRQ(ierr); 379*637a0070SStefano Zampini ierr = VecSet(d,diag);CHKERRQ(ierr); 380*637a0070SStefano Zampini ierr = MatDiagonalSet(A,d,INSERT_VALUES);CHKERRQ(ierr); 381*637a0070SStefano Zampini ierr = VecDestroy(&d);CHKERRQ(ierr); 382b9679d65SBarry Smith } 383606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 3843a40ed3dSBarry Smith PetscFunctionReturn(0); 3858965ea79SLois Curfman McInnes } 3868965ea79SLois Curfman McInnes 387cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMult_SeqDense(Mat,Vec,Vec); 388cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultAdd_SeqDense(Mat,Vec,Vec,Vec); 389cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTranspose_SeqDense(Mat,Vec,Vec); 390cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTransposeAdd_SeqDense(Mat,Vec,Vec,Vec); 391cc2e6a90SBarry Smith 392dfbe8321SBarry Smith PetscErrorCode MatMult_MPIDense(Mat mat,Vec xx,Vec yy) 3938965ea79SLois Curfman McInnes { 39439ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 395dfbe8321SBarry Smith PetscErrorCode ierr; 396*637a0070SStefano Zampini const PetscScalar *ax; 397*637a0070SStefano Zampini PetscScalar *ay; 398c456f294SBarry Smith 3993a40ed3dSBarry Smith PetscFunctionBegin; 400*637a0070SStefano Zampini ierr = VecGetArrayReadInPlace(xx,&ax);CHKERRQ(ierr); 401*637a0070SStefano Zampini ierr = VecGetArrayInPlace(mdn->lvec,&ay);CHKERRQ(ierr); 402*637a0070SStefano Zampini ierr = PetscSFBcastBegin(mdn->Mvctx,MPIU_SCALAR,ax,ay);CHKERRQ(ierr); 403*637a0070SStefano Zampini ierr = PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ax,ay);CHKERRQ(ierr); 404*637a0070SStefano Zampini ierr = VecRestoreArrayInPlace(mdn->lvec,&ay);CHKERRQ(ierr); 405*637a0070SStefano Zampini ierr = VecRestoreArrayReadInPlace(xx,&ax);CHKERRQ(ierr); 406*637a0070SStefano Zampini ierr = (*mdn->A->ops->mult)(mdn->A,mdn->lvec,yy);CHKERRQ(ierr); 4073a40ed3dSBarry Smith PetscFunctionReturn(0); 4088965ea79SLois Curfman McInnes } 4098965ea79SLois Curfman McInnes 410dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz) 4118965ea79SLois Curfman McInnes { 41239ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 413dfbe8321SBarry Smith PetscErrorCode ierr; 414*637a0070SStefano Zampini const PetscScalar *ax; 415*637a0070SStefano Zampini PetscScalar *ay; 416c456f294SBarry Smith 4173a40ed3dSBarry Smith PetscFunctionBegin; 418*637a0070SStefano Zampini ierr = VecGetArrayReadInPlace(xx,&ax);CHKERRQ(ierr); 419*637a0070SStefano Zampini ierr = VecGetArrayInPlace(mdn->lvec,&ay);CHKERRQ(ierr); 420*637a0070SStefano Zampini ierr = PetscSFBcastBegin(mdn->Mvctx,MPIU_SCALAR,ax,ay);CHKERRQ(ierr); 421*637a0070SStefano Zampini ierr = PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ax,ay);CHKERRQ(ierr); 422*637a0070SStefano Zampini ierr = VecRestoreArrayInPlace(mdn->lvec,&ay);CHKERRQ(ierr); 423*637a0070SStefano Zampini ierr = VecRestoreArrayReadInPlace(xx,&ax);CHKERRQ(ierr); 424*637a0070SStefano Zampini ierr = (*mdn->A->ops->multadd)(mdn->A,mdn->lvec,yy,zz);CHKERRQ(ierr); 4253a40ed3dSBarry Smith PetscFunctionReturn(0); 4268965ea79SLois Curfman McInnes } 4278965ea79SLois Curfman McInnes 428dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIDense(Mat A,Vec xx,Vec yy) 429096963f5SLois Curfman McInnes { 430096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 431dfbe8321SBarry Smith PetscErrorCode ierr; 432*637a0070SStefano Zampini const PetscScalar *ax; 433*637a0070SStefano Zampini PetscScalar *ay; 434096963f5SLois Curfman McInnes 4353a40ed3dSBarry Smith PetscFunctionBegin; 436*637a0070SStefano Zampini ierr = VecSet(yy,0.0);CHKERRQ(ierr); 437*637a0070SStefano Zampini ierr = (*a->A->ops->multtranspose)(a->A,xx,a->lvec);CHKERRQ(ierr); 438*637a0070SStefano Zampini ierr = VecGetArrayReadInPlace(a->lvec,&ax);CHKERRQ(ierr); 439*637a0070SStefano Zampini ierr = VecGetArrayInPlace(yy,&ay);CHKERRQ(ierr); 440*637a0070SStefano Zampini ierr = PetscSFReduceBegin(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM);CHKERRQ(ierr); 441*637a0070SStefano Zampini ierr = PetscSFReduceEnd(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM);CHKERRQ(ierr); 442*637a0070SStefano Zampini ierr = VecRestoreArrayReadInPlace(a->lvec,&ax);CHKERRQ(ierr); 443*637a0070SStefano Zampini ierr = VecRestoreArrayInPlace(yy,&ay);CHKERRQ(ierr); 4443a40ed3dSBarry Smith PetscFunctionReturn(0); 445096963f5SLois Curfman McInnes } 446096963f5SLois Curfman McInnes 447dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz) 448096963f5SLois Curfman McInnes { 449096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 450dfbe8321SBarry Smith PetscErrorCode ierr; 451*637a0070SStefano Zampini const PetscScalar *ax; 452*637a0070SStefano Zampini PetscScalar *ay; 453096963f5SLois Curfman McInnes 4543a40ed3dSBarry Smith PetscFunctionBegin; 4553501a2bdSLois Curfman McInnes ierr = VecCopy(yy,zz);CHKERRQ(ierr); 456*637a0070SStefano Zampini ierr = (*a->A->ops->multtranspose)(a->A,xx,a->lvec);CHKERRQ(ierr); 457*637a0070SStefano Zampini ierr = VecGetArrayReadInPlace(a->lvec,&ax);CHKERRQ(ierr); 458*637a0070SStefano Zampini ierr = VecGetArrayInPlace(zz,&ay);CHKERRQ(ierr); 459*637a0070SStefano Zampini ierr = PetscSFReduceBegin(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM);CHKERRQ(ierr); 460*637a0070SStefano Zampini ierr = PetscSFReduceEnd(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM);CHKERRQ(ierr); 461*637a0070SStefano Zampini ierr = VecRestoreArrayReadInPlace(a->lvec,&ax);CHKERRQ(ierr); 462*637a0070SStefano Zampini ierr = VecRestoreArrayInPlace(zz,&ay);CHKERRQ(ierr); 4633a40ed3dSBarry Smith PetscFunctionReturn(0); 464096963f5SLois Curfman McInnes } 465096963f5SLois Curfman McInnes 466dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIDense(Mat A,Vec v) 4678965ea79SLois Curfman McInnes { 46839ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 469dfbe8321SBarry Smith PetscErrorCode ierr; 470*637a0070SStefano Zampini PetscInt lda,len,i,n,m = A->rmap->n,radd; 47187828ca2SBarry Smith PetscScalar *x,zero = 0.0; 472*637a0070SStefano Zampini const PetscScalar *av; 473ed3cc1f0SBarry Smith 4743a40ed3dSBarry Smith PetscFunctionBegin; 4752dcb1b2aSMatthew Knepley ierr = VecSet(v,zero);CHKERRQ(ierr); 4761ebc52fbSHong Zhang ierr = VecGetArray(v,&x);CHKERRQ(ierr); 477096963f5SLois Curfman McInnes ierr = VecGetSize(v,&n);CHKERRQ(ierr); 478e32f2f54SBarry Smith if (n != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec"); 479d0f46423SBarry Smith len = PetscMin(a->A->rmap->n,a->A->cmap->n); 480d0f46423SBarry Smith radd = A->rmap->rstart*m; 481*637a0070SStefano Zampini ierr = MatDenseGetArrayRead(a->A,&av);CHKERRQ(ierr); 482*637a0070SStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 48344cd7ae7SLois Curfman McInnes for (i=0; i<len; i++) { 484*637a0070SStefano Zampini x[i] = av[radd + i*lda + i]; 485096963f5SLois Curfman McInnes } 486*637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(a->A,&av);CHKERRQ(ierr); 4871ebc52fbSHong Zhang ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 4883a40ed3dSBarry Smith PetscFunctionReturn(0); 4898965ea79SLois Curfman McInnes } 4908965ea79SLois Curfman McInnes 491dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIDense(Mat mat) 4928965ea79SLois Curfman McInnes { 4933501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 494dfbe8321SBarry Smith PetscErrorCode ierr; 495ed3cc1f0SBarry Smith 4963a40ed3dSBarry Smith PetscFunctionBegin; 497aa482453SBarry Smith #if defined(PETSC_USE_LOG) 498d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D, Cols=%D",mat->rmap->N,mat->cmap->N); 4998965ea79SLois Curfman McInnes #endif 5008798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 5016bf464f9SBarry Smith ierr = MatDestroy(&mdn->A);CHKERRQ(ierr); 5026bf464f9SBarry Smith ierr = VecDestroy(&mdn->lvec);CHKERRQ(ierr); 503*637a0070SStefano Zampini ierr = PetscSFDestroy(&mdn->Mvctx);CHKERRQ(ierr); 50401b82886SBarry Smith 505bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 506dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 5078baccfbdSHong Zhang 50849a6ff4bSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",NULL);CHKERRQ(ierr); 5098baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",NULL);CHKERRQ(ierr); 5108572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",NULL);CHKERRQ(ierr); 5118572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",NULL);CHKERRQ(ierr); 5128572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",NULL);CHKERRQ(ierr); 513d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",NULL);CHKERRQ(ierr); 514d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",NULL);CHKERRQ(ierr); 5158baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 5168baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",NULL);CHKERRQ(ierr); 5178baccfbdSHong Zhang #endif 518bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",NULL);CHKERRQ(ierr); 5194222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 5204222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaij_C",NULL);CHKERRQ(ierr); 521bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 522bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 52352c5f739Sprj- ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_nest_mpidense_C",NULL);CHKERRQ(ierr); 52452c5f739Sprj- ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_nest_mpidense_C",NULL);CHKERRQ(ierr); 5258baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultSymbolic_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 5268baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultNumeric_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 52786aefd0dSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",NULL);CHKERRQ(ierr); 52886aefd0dSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",NULL);CHKERRQ(ierr); 5293a40ed3dSBarry Smith PetscFunctionReturn(0); 5308965ea79SLois Curfman McInnes } 53139ddd567SLois Curfman McInnes 53252c5f739Sprj- PETSC_INTERN PetscErrorCode MatView_SeqDense(Mat,PetscViewer); 53352c5f739Sprj- 5349804daf3SBarry Smith #include <petscdraw.h> 5356849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 5368965ea79SLois Curfman McInnes { 53739ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 538dfbe8321SBarry Smith PetscErrorCode ierr; 5397da1fb6eSBarry Smith PetscMPIInt rank = mdn->rank; 54019fd82e9SBarry Smith PetscViewerType vtype; 541ace3abfcSBarry Smith PetscBool iascii,isdraw; 542b0a32e0cSBarry Smith PetscViewer sviewer; 543f3ef73ceSBarry Smith PetscViewerFormat format; 5448965ea79SLois Curfman McInnes 5453a40ed3dSBarry Smith PetscFunctionBegin; 546251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 547251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 54832077d6dSBarry Smith if (iascii) { 549b0a32e0cSBarry Smith ierr = PetscViewerGetType(viewer,&vtype);CHKERRQ(ierr); 550b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 551456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 5524e220ebcSLois Curfman McInnes MatInfo info; 553888f2ed8SSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 5541575c14dSBarry Smith ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr); 5557b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer," [%d] local rows %D nz %D nz alloced %D mem %D \n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory);CHKERRQ(ierr); 556b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 5571575c14dSBarry Smith ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr); 558*637a0070SStefano Zampini ierr = PetscSFView(mdn->Mvctx,viewer);CHKERRQ(ierr); 5593a40ed3dSBarry Smith PetscFunctionReturn(0); 560fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 5613a40ed3dSBarry Smith PetscFunctionReturn(0); 5628965ea79SLois Curfman McInnes } 563f1af5d2fSBarry Smith } else if (isdraw) { 564b0a32e0cSBarry Smith PetscDraw draw; 565ace3abfcSBarry Smith PetscBool isnull; 566f1af5d2fSBarry Smith 567b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 568b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 569f1af5d2fSBarry Smith if (isnull) PetscFunctionReturn(0); 570f1af5d2fSBarry Smith } 57177ed5343SBarry Smith 5727da1fb6eSBarry Smith { 5738965ea79SLois Curfman McInnes /* assemble the entire matrix onto first processor. */ 5748965ea79SLois Curfman McInnes Mat A; 575d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,m,row,i,nz; 576ba8c8a56SBarry Smith PetscInt *cols; 577ba8c8a56SBarry Smith PetscScalar *vals; 5788965ea79SLois Curfman McInnes 579ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr); 5808965ea79SLois Curfman McInnes if (!rank) { 581f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 5823a40ed3dSBarry Smith } else { 583f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 5848965ea79SLois Curfman McInnes } 5857adad957SLisandro Dalcin /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */ 586878740d9SKris Buschelman ierr = MatSetType(A,MATMPIDENSE);CHKERRQ(ierr); 5870298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(A,NULL);CHKERRQ(ierr); 5883bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr); 5898965ea79SLois Curfman McInnes 59039ddd567SLois Curfman McInnes /* Copy the matrix ... This isn't the most efficient means, 59139ddd567SLois Curfman McInnes but it's quick for now */ 59251022da4SBarry Smith A->insertmode = INSERT_VALUES; 5932205254eSKarl Rupp 5942205254eSKarl Rupp row = mat->rmap->rstart; 5952205254eSKarl Rupp m = mdn->A->rmap->n; 5968965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 597ba8c8a56SBarry Smith ierr = MatGetRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 598ba8c8a56SBarry Smith ierr = MatSetValues_MPIDense(A,1,&row,nz,cols,vals,INSERT_VALUES);CHKERRQ(ierr); 599ba8c8a56SBarry Smith ierr = MatRestoreRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 60039ddd567SLois Curfman McInnes row++; 6018965ea79SLois Curfman McInnes } 6028965ea79SLois Curfman McInnes 6036d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 6046d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 6053f08860eSBarry Smith ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 606b9b97703SBarry Smith if (!rank) { 6071a9d3c3cSBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPIDense*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr); 6087da1fb6eSBarry Smith ierr = MatView_SeqDense(((Mat_MPIDense*)(A->data))->A,sviewer);CHKERRQ(ierr); 6098965ea79SLois Curfman McInnes } 6103f08860eSBarry Smith ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 611b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 6126bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 6138965ea79SLois Curfman McInnes } 6143a40ed3dSBarry Smith PetscFunctionReturn(0); 6158965ea79SLois Curfman McInnes } 6168965ea79SLois Curfman McInnes 617dfbe8321SBarry Smith PetscErrorCode MatView_MPIDense(Mat mat,PetscViewer viewer) 6188965ea79SLois Curfman McInnes { 619dfbe8321SBarry Smith PetscErrorCode ierr; 620ace3abfcSBarry Smith PetscBool iascii,isbinary,isdraw,issocket; 6218965ea79SLois Curfman McInnes 622433994e6SBarry Smith PetscFunctionBegin; 623251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 624251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 625251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 626251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 6270f5bd95cSBarry Smith 62832077d6dSBarry Smith if (iascii || issocket || isdraw) { 629f1af5d2fSBarry Smith ierr = MatView_MPIDense_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 6300f5bd95cSBarry Smith } else if (isbinary) { 6318491ab44SLisandro Dalcin ierr = MatView_Dense_Binary(mat,viewer);CHKERRQ(ierr); 63211aeaf0aSBarry Smith } 6333a40ed3dSBarry Smith PetscFunctionReturn(0); 6348965ea79SLois Curfman McInnes } 6358965ea79SLois Curfman McInnes 636dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info) 6378965ea79SLois Curfman McInnes { 6383501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 6393501a2bdSLois Curfman McInnes Mat mdn = mat->A; 640dfbe8321SBarry Smith PetscErrorCode ierr; 6413966268fSBarry Smith PetscLogDouble isend[5],irecv[5]; 6428965ea79SLois Curfman McInnes 6433a40ed3dSBarry Smith PetscFunctionBegin; 6444e220ebcSLois Curfman McInnes info->block_size = 1.0; 6452205254eSKarl Rupp 6464e220ebcSLois Curfman McInnes ierr = MatGetInfo(mdn,MAT_LOCAL,info);CHKERRQ(ierr); 6472205254eSKarl Rupp 6484e220ebcSLois Curfman McInnes isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 6494e220ebcSLois Curfman McInnes isend[3] = info->memory; isend[4] = info->mallocs; 6508965ea79SLois Curfman McInnes if (flag == MAT_LOCAL) { 6514e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 6524e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 6534e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 6544e220ebcSLois Curfman McInnes info->memory = isend[3]; 6554e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 6568965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 6573966268fSBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 6582205254eSKarl Rupp 6594e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 6604e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 6614e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 6624e220ebcSLois Curfman McInnes info->memory = irecv[3]; 6634e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 6648965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 6653966268fSBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 6662205254eSKarl Rupp 6674e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 6684e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 6694e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 6704e220ebcSLois Curfman McInnes info->memory = irecv[3]; 6714e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 6728965ea79SLois Curfman McInnes } 6734e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 6744e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 6754e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 6763a40ed3dSBarry Smith PetscFunctionReturn(0); 6778965ea79SLois Curfman McInnes } 6788965ea79SLois Curfman McInnes 679ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIDense(Mat A,MatOption op,PetscBool flg) 6808965ea79SLois Curfman McInnes { 68139ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 682dfbe8321SBarry Smith PetscErrorCode ierr; 6838965ea79SLois Curfman McInnes 6843a40ed3dSBarry Smith PetscFunctionBegin; 68512c028f9SKris Buschelman switch (op) { 686512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 68712c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 68812c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 68943674050SBarry Smith MatCheckPreallocated(A,1); 6904e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 69112c028f9SKris Buschelman break; 69212c028f9SKris Buschelman case MAT_ROW_ORIENTED: 69343674050SBarry Smith MatCheckPreallocated(A,1); 6944e0d8c25SBarry Smith a->roworiented = flg; 6954e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 69612c028f9SKris Buschelman break; 6974e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 69813fa8e87SLisandro Dalcin case MAT_KEEP_NONZERO_PATTERN: 69912c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 700071fcb05SBarry Smith case MAT_SORTED_FULL: 701290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 70212c028f9SKris Buschelman break; 70312c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 7044e0d8c25SBarry Smith a->donotstash = flg; 70512c028f9SKris Buschelman break; 70677e54ba9SKris Buschelman case MAT_SYMMETRIC: 70777e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 7089a4540c5SBarry Smith case MAT_HERMITIAN: 7099a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 710600fe468SBarry Smith case MAT_IGNORE_LOWER_TRIANGULAR: 7115d7aebe8SStefano Zampini case MAT_IGNORE_ZERO_ENTRIES: 712290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 71377e54ba9SKris Buschelman break; 71412c028f9SKris Buschelman default: 715e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %s",MatOptions[op]); 7163a40ed3dSBarry Smith } 7173a40ed3dSBarry Smith PetscFunctionReturn(0); 7188965ea79SLois Curfman McInnes } 7198965ea79SLois Curfman McInnes 720dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIDense(Mat A,Vec ll,Vec rr) 7215b2fa520SLois Curfman McInnes { 7225b2fa520SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 723*637a0070SStefano Zampini const PetscScalar *l; 724*637a0070SStefano Zampini PetscScalar x,*v,*vv,*r; 725dfbe8321SBarry Smith PetscErrorCode ierr; 726*637a0070SStefano Zampini PetscInt i,j,s2a,s3a,s2,s3,m=mdn->A->rmap->n,n=mdn->A->cmap->n,lda; 7275b2fa520SLois Curfman McInnes 7285b2fa520SLois Curfman McInnes PetscFunctionBegin; 729*637a0070SStefano Zampini ierr = MatDenseGetArray(mdn->A,&vv);CHKERRQ(ierr); 730*637a0070SStefano Zampini ierr = MatDenseGetLDA(mdn->A,&lda);CHKERRQ(ierr); 73172d926a5SLois Curfman McInnes ierr = MatGetLocalSize(A,&s2,&s3);CHKERRQ(ierr); 7325b2fa520SLois Curfman McInnes if (ll) { 73372d926a5SLois Curfman McInnes ierr = VecGetLocalSize(ll,&s2a);CHKERRQ(ierr); 734*637a0070SStefano Zampini if (s2a != s2) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vector non-conforming local size, %D != %D", s2a, s2); 735bca11509SBarry Smith ierr = VecGetArrayRead(ll,&l);CHKERRQ(ierr); 7365b2fa520SLois Curfman McInnes for (i=0; i<m; i++) { 7375b2fa520SLois Curfman McInnes x = l[i]; 738*637a0070SStefano Zampini v = vv + i; 739*637a0070SStefano Zampini for (j=0; j<n; j++) { (*v) *= x; v+= lda;} 7405b2fa520SLois Curfman McInnes } 741bca11509SBarry Smith ierr = VecRestoreArrayRead(ll,&l);CHKERRQ(ierr); 742*637a0070SStefano Zampini ierr = PetscLogFlops(1.0*n*m);CHKERRQ(ierr); 7435b2fa520SLois Curfman McInnes } 7445b2fa520SLois Curfman McInnes if (rr) { 745*637a0070SStefano Zampini const PetscScalar *ar; 746*637a0070SStefano Zampini 747175be7b4SMatthew Knepley ierr = VecGetLocalSize(rr,&s3a);CHKERRQ(ierr); 748e32f2f54SBarry Smith if (s3a != s3) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vec non-conforming local size, %d != %d.", s3a, s3); 749*637a0070SStefano Zampini ierr = VecGetArrayRead(rr,&ar);CHKERRQ(ierr); 750*637a0070SStefano Zampini ierr = VecGetArray(mdn->lvec,&r);CHKERRQ(ierr); 751*637a0070SStefano Zampini ierr = PetscSFBcastBegin(mdn->Mvctx,MPIU_SCALAR,ar,r);CHKERRQ(ierr); 752*637a0070SStefano Zampini ierr = PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ar,r);CHKERRQ(ierr); 753*637a0070SStefano Zampini ierr = VecRestoreArrayRead(rr,&ar);CHKERRQ(ierr); 7545b2fa520SLois Curfman McInnes for (i=0; i<n; i++) { 7555b2fa520SLois Curfman McInnes x = r[i]; 756*637a0070SStefano Zampini v = vv + i*lda; 7572205254eSKarl Rupp for (j=0; j<m; j++) (*v++) *= x; 7585b2fa520SLois Curfman McInnes } 759*637a0070SStefano Zampini ierr = VecRestoreArray(mdn->lvec,&r);CHKERRQ(ierr); 760*637a0070SStefano Zampini ierr = PetscLogFlops(1.0*n*m);CHKERRQ(ierr); 7615b2fa520SLois Curfman McInnes } 762*637a0070SStefano Zampini ierr = MatDenseRestoreArray(mdn->A,&vv);CHKERRQ(ierr); 7635b2fa520SLois Curfman McInnes PetscFunctionReturn(0); 7645b2fa520SLois Curfman McInnes } 7655b2fa520SLois Curfman McInnes 766dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIDense(Mat A,NormType type,PetscReal *nrm) 767096963f5SLois Curfman McInnes { 7683501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 769dfbe8321SBarry Smith PetscErrorCode ierr; 77013f74950SBarry Smith PetscInt i,j; 771329f5518SBarry Smith PetscReal sum = 0.0; 772*637a0070SStefano Zampini const PetscScalar *av,*v; 7733501a2bdSLois Curfman McInnes 7743a40ed3dSBarry Smith PetscFunctionBegin; 775*637a0070SStefano Zampini ierr = MatDenseGetArrayRead(mdn->A,&av);CHKERRQ(ierr); 776*637a0070SStefano Zampini v = av; 7773501a2bdSLois Curfman McInnes if (mdn->size == 1) { 778064f8208SBarry Smith ierr = MatNorm(mdn->A,type,nrm);CHKERRQ(ierr); 7793501a2bdSLois Curfman McInnes } else { 7803501a2bdSLois Curfman McInnes if (type == NORM_FROBENIUS) { 781d0f46423SBarry Smith for (i=0; i<mdn->A->cmap->n*mdn->A->rmap->n; i++) { 782329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 7833501a2bdSLois Curfman McInnes } 784b2566f29SBarry Smith ierr = MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 7858f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 786dc0b31edSSatish Balay ierr = PetscLogFlops(2.0*mdn->A->cmap->n*mdn->A->rmap->n);CHKERRQ(ierr); 7873a40ed3dSBarry Smith } else if (type == NORM_1) { 788329f5518SBarry Smith PetscReal *tmp,*tmp2; 789580bdb30SBarry Smith ierr = PetscCalloc2(A->cmap->N,&tmp,A->cmap->N,&tmp2);CHKERRQ(ierr); 790064f8208SBarry Smith *nrm = 0.0; 791*637a0070SStefano Zampini v = av; 792d0f46423SBarry Smith for (j=0; j<mdn->A->cmap->n; j++) { 793d0f46423SBarry Smith for (i=0; i<mdn->A->rmap->n; i++) { 79467e560aaSBarry Smith tmp[j] += PetscAbsScalar(*v); v++; 7953501a2bdSLois Curfman McInnes } 7963501a2bdSLois Curfman McInnes } 797b2566f29SBarry Smith ierr = MPIU_Allreduce(tmp,tmp2,A->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 798d0f46423SBarry Smith for (j=0; j<A->cmap->N; j++) { 799064f8208SBarry Smith if (tmp2[j] > *nrm) *nrm = tmp2[j]; 8003501a2bdSLois Curfman McInnes } 8018627564fSBarry Smith ierr = PetscFree2(tmp,tmp2);CHKERRQ(ierr); 802d0f46423SBarry Smith ierr = PetscLogFlops(A->cmap->n*A->rmap->n);CHKERRQ(ierr); 8033a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 804329f5518SBarry Smith PetscReal ntemp; 8053501a2bdSLois Curfman McInnes ierr = MatNorm(mdn->A,type,&ntemp);CHKERRQ(ierr); 806b2566f29SBarry Smith ierr = MPIU_Allreduce(&ntemp,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 807ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"No support for two norm"); 8083501a2bdSLois Curfman McInnes } 809*637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(mdn->A,&av);CHKERRQ(ierr); 8103a40ed3dSBarry Smith PetscFunctionReturn(0); 8113501a2bdSLois Curfman McInnes } 8123501a2bdSLois Curfman McInnes 813fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIDense(Mat A,MatReuse reuse,Mat *matout) 8143501a2bdSLois Curfman McInnes { 8153501a2bdSLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 8163501a2bdSLois Curfman McInnes Mat B; 817d0f46423SBarry Smith PetscInt M = A->rmap->N,N = A->cmap->N,m,n,*rwork,rstart = A->rmap->rstart; 8186849ba73SBarry Smith PetscErrorCode ierr; 819*637a0070SStefano Zampini PetscInt j,i,lda; 82087828ca2SBarry Smith PetscScalar *v; 8213501a2bdSLois Curfman McInnes 8223a40ed3dSBarry Smith PetscFunctionBegin; 823cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 824ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 825d0f46423SBarry Smith ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr); 8267adad957SLisandro Dalcin ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr); 8270298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(B,NULL);CHKERRQ(ierr); 828*637a0070SStefano Zampini } else B = *matout; 8293501a2bdSLois Curfman McInnes 830*637a0070SStefano Zampini m = a->A->rmap->n; n = a->A->cmap->n; 831*637a0070SStefano Zampini ierr = MatDenseGetArrayRead(a->A,(const PetscScalar**)&v);CHKERRQ(ierr); 832*637a0070SStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 833785e854fSJed Brown ierr = PetscMalloc1(m,&rwork);CHKERRQ(ierr); 8343501a2bdSLois Curfman McInnes for (i=0; i<m; i++) rwork[i] = rstart + i; 8351acff37aSSatish Balay for (j=0; j<n; j++) { 8363501a2bdSLois Curfman McInnes ierr = MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES);CHKERRQ(ierr); 837*637a0070SStefano Zampini v += lda; 8383501a2bdSLois Curfman McInnes } 839*637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(a->A,(const PetscScalar**)&v);CHKERRQ(ierr); 840606d414cSSatish Balay ierr = PetscFree(rwork);CHKERRQ(ierr); 8416d4a8577SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 8426d4a8577SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 843cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) { 8443501a2bdSLois Curfman McInnes *matout = B; 8453501a2bdSLois Curfman McInnes } else { 84628be2f97SBarry Smith ierr = MatHeaderMerge(A,&B);CHKERRQ(ierr); 8473501a2bdSLois Curfman McInnes } 8483a40ed3dSBarry Smith PetscFunctionReturn(0); 849096963f5SLois Curfman McInnes } 850096963f5SLois Curfman McInnes 8516849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat*); 85252c5f739Sprj- PETSC_INTERN PetscErrorCode MatScale_MPIDense(Mat,PetscScalar); 8538965ea79SLois Curfman McInnes 8544994cf47SJed Brown PetscErrorCode MatSetUp_MPIDense(Mat A) 855273d9f13SBarry Smith { 856dfbe8321SBarry Smith PetscErrorCode ierr; 857273d9f13SBarry Smith 858273d9f13SBarry Smith PetscFunctionBegin; 85918992e5dSStefano Zampini ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr); 86018992e5dSStefano Zampini ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr); 86118992e5dSStefano Zampini if (!A->preallocated) { 862273d9f13SBarry Smith ierr = MatMPIDenseSetPreallocation(A,0);CHKERRQ(ierr); 86318992e5dSStefano Zampini } 864273d9f13SBarry Smith PetscFunctionReturn(0); 865273d9f13SBarry Smith } 866273d9f13SBarry Smith 867488007eeSBarry Smith PetscErrorCode MatAXPY_MPIDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str) 868488007eeSBarry Smith { 869488007eeSBarry Smith PetscErrorCode ierr; 870488007eeSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)Y->data, *B = (Mat_MPIDense*)X->data; 871488007eeSBarry Smith 872488007eeSBarry Smith PetscFunctionBegin; 873488007eeSBarry Smith ierr = MatAXPY(A->A,alpha,B->A,str);CHKERRQ(ierr); 874488007eeSBarry Smith PetscFunctionReturn(0); 875488007eeSBarry Smith } 876488007eeSBarry Smith 8777087cfbeSBarry Smith PetscErrorCode MatConjugate_MPIDense(Mat mat) 878ba337c44SJed Brown { 879ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)mat->data; 880ba337c44SJed Brown PetscErrorCode ierr; 881ba337c44SJed Brown 882ba337c44SJed Brown PetscFunctionBegin; 883ba337c44SJed Brown ierr = MatConjugate(a->A);CHKERRQ(ierr); 884ba337c44SJed Brown PetscFunctionReturn(0); 885ba337c44SJed Brown } 886ba337c44SJed Brown 887ba337c44SJed Brown PetscErrorCode MatRealPart_MPIDense(Mat A) 888ba337c44SJed Brown { 889ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 890ba337c44SJed Brown PetscErrorCode ierr; 891ba337c44SJed Brown 892ba337c44SJed Brown PetscFunctionBegin; 893ba337c44SJed Brown ierr = MatRealPart(a->A);CHKERRQ(ierr); 894ba337c44SJed Brown PetscFunctionReturn(0); 895ba337c44SJed Brown } 896ba337c44SJed Brown 897ba337c44SJed Brown PetscErrorCode MatImaginaryPart_MPIDense(Mat A) 898ba337c44SJed Brown { 899ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 900ba337c44SJed Brown PetscErrorCode ierr; 901ba337c44SJed Brown 902ba337c44SJed Brown PetscFunctionBegin; 903ba337c44SJed Brown ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 904ba337c44SJed Brown PetscFunctionReturn(0); 905ba337c44SJed Brown } 906ba337c44SJed Brown 90749a6ff4bSBarry Smith static PetscErrorCode MatGetColumnVector_MPIDense(Mat A,Vec v,PetscInt col) 90849a6ff4bSBarry Smith { 90949a6ff4bSBarry Smith PetscErrorCode ierr; 910*637a0070SStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*) A->data; 91149a6ff4bSBarry Smith 91249a6ff4bSBarry Smith PetscFunctionBegin; 913*637a0070SStefano Zampini if (!a->A) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Missing local matrix"); 914*637a0070SStefano Zampini if (!a->A->ops->getcolumnvector) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Missing get column operation"); 915*637a0070SStefano Zampini ierr = (*a->A->ops->getcolumnvector)(a->A,v,col);CHKERRQ(ierr); 91649a6ff4bSBarry Smith PetscFunctionReturn(0); 91749a6ff4bSBarry Smith } 91849a6ff4bSBarry Smith 91952c5f739Sprj- PETSC_INTERN PetscErrorCode MatGetColumnNorms_SeqDense(Mat,NormType,PetscReal*); 92052c5f739Sprj- 9210716a85fSBarry Smith PetscErrorCode MatGetColumnNorms_MPIDense(Mat A,NormType type,PetscReal *norms) 9220716a85fSBarry Smith { 9230716a85fSBarry Smith PetscErrorCode ierr; 9240716a85fSBarry Smith PetscInt i,n; 9250716a85fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*) A->data; 9260716a85fSBarry Smith PetscReal *work; 9270716a85fSBarry Smith 9280716a85fSBarry Smith PetscFunctionBegin; 9290298fd71SBarry Smith ierr = MatGetSize(A,NULL,&n);CHKERRQ(ierr); 930785e854fSJed Brown ierr = PetscMalloc1(n,&work);CHKERRQ(ierr); 9310716a85fSBarry Smith ierr = MatGetColumnNorms_SeqDense(a->A,type,work);CHKERRQ(ierr); 9320716a85fSBarry Smith if (type == NORM_2) { 9330716a85fSBarry Smith for (i=0; i<n; i++) work[i] *= work[i]; 9340716a85fSBarry Smith } 9350716a85fSBarry Smith if (type == NORM_INFINITY) { 936b2566f29SBarry Smith ierr = MPIU_Allreduce(work,norms,n,MPIU_REAL,MPIU_MAX,A->hdr.comm);CHKERRQ(ierr); 9370716a85fSBarry Smith } else { 938b2566f29SBarry Smith ierr = MPIU_Allreduce(work,norms,n,MPIU_REAL,MPIU_SUM,A->hdr.comm);CHKERRQ(ierr); 9390716a85fSBarry Smith } 9400716a85fSBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 9410716a85fSBarry Smith if (type == NORM_2) { 9428f1a2a5eSBarry Smith for (i=0; i<n; i++) norms[i] = PetscSqrtReal(norms[i]); 9430716a85fSBarry Smith } 9440716a85fSBarry Smith PetscFunctionReturn(0); 9450716a85fSBarry Smith } 9460716a85fSBarry Smith 947*637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 948*637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAPlaceArray_MPIDenseCUDA(Mat A, const PetscScalar *a) 949*637a0070SStefano Zampini { 950*637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 951*637a0070SStefano Zampini PetscErrorCode ierr; 952*637a0070SStefano Zampini 953*637a0070SStefano Zampini PetscFunctionBegin; 954*637a0070SStefano Zampini ierr = MatDenseCUDAPlaceArray(l->A,a);CHKERRQ(ierr); 955*637a0070SStefano Zampini PetscFunctionReturn(0); 956*637a0070SStefano Zampini } 957*637a0070SStefano Zampini 958*637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAResetArray_MPIDenseCUDA(Mat A) 959*637a0070SStefano Zampini { 960*637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 961*637a0070SStefano Zampini PetscErrorCode ierr; 962*637a0070SStefano Zampini 963*637a0070SStefano Zampini PetscFunctionBegin; 964*637a0070SStefano Zampini ierr = MatDenseCUDAResetArray(l->A);CHKERRQ(ierr); 965*637a0070SStefano Zampini PetscFunctionReturn(0); 966*637a0070SStefano Zampini } 967*637a0070SStefano Zampini 968*637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArrayWrite_MPIDenseCUDA(Mat A, PetscScalar **a) 969*637a0070SStefano Zampini { 970*637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 971*637a0070SStefano Zampini PetscErrorCode ierr; 972*637a0070SStefano Zampini 973*637a0070SStefano Zampini PetscFunctionBegin; 974*637a0070SStefano Zampini ierr = MatDenseCUDAGetArrayWrite(l->A,a);CHKERRQ(ierr); 975*637a0070SStefano Zampini PetscFunctionReturn(0); 976*637a0070SStefano Zampini } 977*637a0070SStefano Zampini 978*637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArrayWrite_MPIDenseCUDA(Mat A, PetscScalar **a) 979*637a0070SStefano Zampini { 980*637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 981*637a0070SStefano Zampini PetscErrorCode ierr; 982*637a0070SStefano Zampini 983*637a0070SStefano Zampini PetscFunctionBegin; 984*637a0070SStefano Zampini ierr = MatDenseCUDARestoreArrayWrite(l->A,a);CHKERRQ(ierr); 985*637a0070SStefano Zampini PetscFunctionReturn(0); 986*637a0070SStefano Zampini } 987*637a0070SStefano Zampini 988*637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArrayRead_MPIDenseCUDA(Mat A, const PetscScalar **a) 989*637a0070SStefano Zampini { 990*637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 991*637a0070SStefano Zampini PetscErrorCode ierr; 992*637a0070SStefano Zampini 993*637a0070SStefano Zampini PetscFunctionBegin; 994*637a0070SStefano Zampini ierr = MatDenseCUDAGetArrayRead(l->A,a);CHKERRQ(ierr); 995*637a0070SStefano Zampini PetscFunctionReturn(0); 996*637a0070SStefano Zampini } 997*637a0070SStefano Zampini 998*637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArrayRead_MPIDenseCUDA(Mat A, const PetscScalar **a) 999*637a0070SStefano Zampini { 1000*637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1001*637a0070SStefano Zampini PetscErrorCode ierr; 1002*637a0070SStefano Zampini 1003*637a0070SStefano Zampini PetscFunctionBegin; 1004*637a0070SStefano Zampini ierr = MatDenseCUDARestoreArrayRead(l->A,a);CHKERRQ(ierr); 1005*637a0070SStefano Zampini PetscFunctionReturn(0); 1006*637a0070SStefano Zampini } 1007*637a0070SStefano Zampini 1008*637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArray_MPIDenseCUDA(Mat A, PetscScalar **a) 1009*637a0070SStefano Zampini { 1010*637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1011*637a0070SStefano Zampini PetscErrorCode ierr; 1012*637a0070SStefano Zampini 1013*637a0070SStefano Zampini PetscFunctionBegin; 1014*637a0070SStefano Zampini ierr = MatDenseCUDAGetArray(l->A,a);CHKERRQ(ierr); 1015*637a0070SStefano Zampini PetscFunctionReturn(0); 1016*637a0070SStefano Zampini } 1017*637a0070SStefano Zampini 1018*637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArray_MPIDenseCUDA(Mat A, PetscScalar **a) 1019*637a0070SStefano Zampini { 1020*637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1021*637a0070SStefano Zampini PetscErrorCode ierr; 1022*637a0070SStefano Zampini 1023*637a0070SStefano Zampini PetscFunctionBegin; 1024*637a0070SStefano Zampini ierr = MatDenseCUDARestoreArray(l->A,a);CHKERRQ(ierr); 1025*637a0070SStefano Zampini PetscFunctionReturn(0); 1026*637a0070SStefano Zampini } 1027*637a0070SStefano Zampini 1028*637a0070SStefano Zampini static PetscErrorCode MatBindToCPU_MPIDenseCUDA(Mat mat,PetscBool bind) 1029*637a0070SStefano Zampini { 1030*637a0070SStefano Zampini Mat_MPIDense *d = (Mat_MPIDense*)mat->data; 1031*637a0070SStefano Zampini PetscErrorCode ierr; 1032*637a0070SStefano Zampini 1033*637a0070SStefano Zampini PetscFunctionBegin; 1034*637a0070SStefano Zampini if (d->A) { 1035*637a0070SStefano Zampini ierr = MatBindToCPU(d->A,bind);CHKERRQ(ierr); 1036*637a0070SStefano Zampini } 1037*637a0070SStefano Zampini mat->boundtocpu = bind; 1038*637a0070SStefano Zampini PetscFunctionReturn(0); 1039*637a0070SStefano Zampini } 1040*637a0070SStefano Zampini 1041*637a0070SStefano Zampini PetscErrorCode MatMPIDenseCUDASetPreallocation(Mat A, PetscScalar *d_data) 1042*637a0070SStefano Zampini { 1043*637a0070SStefano Zampini Mat_MPIDense *d = (Mat_MPIDense*)A->data; 1044*637a0070SStefano Zampini PetscErrorCode ierr; 1045*637a0070SStefano Zampini PetscBool iscuda; 1046*637a0070SStefano Zampini 1047*637a0070SStefano Zampini PetscFunctionBegin; 1048*637a0070SStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIDENSECUDA,&iscuda);CHKERRQ(ierr); 1049*637a0070SStefano Zampini if (!iscuda) PetscFunctionReturn(0); 1050*637a0070SStefano Zampini ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr); 1051*637a0070SStefano Zampini ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr); 1052*637a0070SStefano Zampini if (!d->A) { 1053*637a0070SStefano Zampini ierr = MatCreate(PETSC_COMM_SELF,&d->A);CHKERRQ(ierr); 1054*637a0070SStefano Zampini ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)d->A);CHKERRQ(ierr); 1055*637a0070SStefano Zampini ierr = MatSetSizes(d->A,A->rmap->n,A->cmap->N,A->rmap->n,A->cmap->N);CHKERRQ(ierr); 1056*637a0070SStefano Zampini } 1057*637a0070SStefano Zampini ierr = MatSetType(d->A,MATSEQDENSECUDA);CHKERRQ(ierr); 1058*637a0070SStefano Zampini ierr = MatSeqDenseCUDASetPreallocation(d->A,d_data);CHKERRQ(ierr); 1059*637a0070SStefano Zampini A->preallocated = PETSC_TRUE; 1060*637a0070SStefano Zampini PetscFunctionReturn(0); 1061*637a0070SStefano Zampini } 1062*637a0070SStefano Zampini #endif 1063*637a0070SStefano Zampini 106473a71a0fSBarry Smith static PetscErrorCode MatSetRandom_MPIDense(Mat x,PetscRandom rctx) 106573a71a0fSBarry Smith { 106673a71a0fSBarry Smith Mat_MPIDense *d = (Mat_MPIDense*)x->data; 106773a71a0fSBarry Smith PetscErrorCode ierr; 106873a71a0fSBarry Smith 106973a71a0fSBarry Smith PetscFunctionBegin; 1070*637a0070SStefano Zampini ierr = MatSetRandom(d->A,rctx);CHKERRQ(ierr); 107173a71a0fSBarry Smith PetscFunctionReturn(0); 107273a71a0fSBarry Smith } 107373a71a0fSBarry Smith 107452c5f739Sprj- PETSC_INTERN PetscErrorCode MatMatMultNumeric_MPIDense(Mat A,Mat,Mat); 1075fd4e9aacSBarry Smith 10763b49f96aSBarry Smith static PetscErrorCode MatMissingDiagonal_MPIDense(Mat A,PetscBool *missing,PetscInt *d) 10773b49f96aSBarry Smith { 10783b49f96aSBarry Smith PetscFunctionBegin; 10793b49f96aSBarry Smith *missing = PETSC_FALSE; 10803b49f96aSBarry Smith PetscFunctionReturn(0); 10813b49f96aSBarry Smith } 10823b49f96aSBarry Smith 10834222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat,Mat,PetscReal,Mat); 1084cc48ffa7SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat,Mat,Mat); 1085cc48ffa7SToby Isaac 10868965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/ 108709dc0095SBarry Smith static struct _MatOps MatOps_Values = { MatSetValues_MPIDense, 108809dc0095SBarry Smith MatGetRow_MPIDense, 108909dc0095SBarry Smith MatRestoreRow_MPIDense, 109009dc0095SBarry Smith MatMult_MPIDense, 109197304618SKris Buschelman /* 4*/ MatMultAdd_MPIDense, 10927c922b88SBarry Smith MatMultTranspose_MPIDense, 10937c922b88SBarry Smith MatMultTransposeAdd_MPIDense, 10948965ea79SLois Curfman McInnes 0, 109509dc0095SBarry Smith 0, 109609dc0095SBarry Smith 0, 109797304618SKris Buschelman /* 10*/ 0, 109809dc0095SBarry Smith 0, 109909dc0095SBarry Smith 0, 110009dc0095SBarry Smith 0, 110109dc0095SBarry Smith MatTranspose_MPIDense, 110297304618SKris Buschelman /* 15*/ MatGetInfo_MPIDense, 11036e4ee0c6SHong Zhang MatEqual_MPIDense, 110409dc0095SBarry Smith MatGetDiagonal_MPIDense, 11055b2fa520SLois Curfman McInnes MatDiagonalScale_MPIDense, 110609dc0095SBarry Smith MatNorm_MPIDense, 110797304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPIDense, 110809dc0095SBarry Smith MatAssemblyEnd_MPIDense, 110909dc0095SBarry Smith MatSetOption_MPIDense, 111009dc0095SBarry Smith MatZeroEntries_MPIDense, 1111d519adbfSMatthew Knepley /* 24*/ MatZeroRows_MPIDense, 1112919b68f7SBarry Smith 0, 111301b82886SBarry Smith 0, 111401b82886SBarry Smith 0, 111501b82886SBarry Smith 0, 11164994cf47SJed Brown /* 29*/ MatSetUp_MPIDense, 1117273d9f13SBarry Smith 0, 111809dc0095SBarry Smith 0, 1119c56a70eeSBarry Smith MatGetDiagonalBlock_MPIDense, 11208c778c55SBarry Smith 0, 1121d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPIDense, 112209dc0095SBarry Smith 0, 112309dc0095SBarry Smith 0, 112409dc0095SBarry Smith 0, 112509dc0095SBarry Smith 0, 1126d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPIDense, 11277dae84e0SHong Zhang MatCreateSubMatrices_MPIDense, 112809dc0095SBarry Smith 0, 112909dc0095SBarry Smith MatGetValues_MPIDense, 113009dc0095SBarry Smith 0, 1131d519adbfSMatthew Knepley /* 44*/ 0, 113209dc0095SBarry Smith MatScale_MPIDense, 11337d68702bSBarry Smith MatShift_Basic, 113409dc0095SBarry Smith 0, 113509dc0095SBarry Smith 0, 113673a71a0fSBarry Smith /* 49*/ MatSetRandom_MPIDense, 113709dc0095SBarry Smith 0, 113809dc0095SBarry Smith 0, 113909dc0095SBarry Smith 0, 114009dc0095SBarry Smith 0, 1141d519adbfSMatthew Knepley /* 54*/ 0, 114209dc0095SBarry Smith 0, 114309dc0095SBarry Smith 0, 114409dc0095SBarry Smith 0, 114509dc0095SBarry Smith 0, 11467dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPIDense, 1147b9b97703SBarry Smith MatDestroy_MPIDense, 1148b9b97703SBarry Smith MatView_MPIDense, 1149357abbc8SBarry Smith 0, 115097304618SKris Buschelman 0, 1151d519adbfSMatthew Knepley /* 64*/ 0, 115297304618SKris Buschelman 0, 115397304618SKris Buschelman 0, 115497304618SKris Buschelman 0, 115597304618SKris Buschelman 0, 1156d519adbfSMatthew Knepley /* 69*/ 0, 115797304618SKris Buschelman 0, 115897304618SKris Buschelman 0, 115997304618SKris Buschelman 0, 116097304618SKris Buschelman 0, 1161d519adbfSMatthew Knepley /* 74*/ 0, 116297304618SKris Buschelman 0, 116397304618SKris Buschelman 0, 116497304618SKris Buschelman 0, 116597304618SKris Buschelman 0, 1166d519adbfSMatthew Knepley /* 79*/ 0, 116797304618SKris Buschelman 0, 116897304618SKris Buschelman 0, 116997304618SKris Buschelman 0, 11705bba2384SShri Abhyankar /* 83*/ MatLoad_MPIDense, 1171865e5f61SKris Buschelman 0, 1172865e5f61SKris Buschelman 0, 1173865e5f61SKris Buschelman 0, 1174865e5f61SKris Buschelman 0, 1175865e5f61SKris Buschelman 0, 11764222ddf1SHong Zhang /* 89*/ 0, 11774222ddf1SHong Zhang 0, 1178fd4e9aacSBarry Smith MatMatMultNumeric_MPIDense, 11792fbe02b9SBarry Smith 0, 1180ba337c44SJed Brown 0, 1181d519adbfSMatthew Knepley /* 94*/ 0, 11824222ddf1SHong Zhang 0, 11834222ddf1SHong Zhang 0, 1184cc48ffa7SToby Isaac MatMatTransposeMultNumeric_MPIDense_MPIDense, 1185ba337c44SJed Brown 0, 11864222ddf1SHong Zhang /* 99*/ MatProductSetFromOptions_MPIDense, 1187ba337c44SJed Brown 0, 1188ba337c44SJed Brown 0, 1189ba337c44SJed Brown MatConjugate_MPIDense, 1190ba337c44SJed Brown 0, 1191ba337c44SJed Brown /*104*/ 0, 1192ba337c44SJed Brown MatRealPart_MPIDense, 1193ba337c44SJed Brown MatImaginaryPart_MPIDense, 119486d161a7SShri Abhyankar 0, 119586d161a7SShri Abhyankar 0, 119686d161a7SShri Abhyankar /*109*/ 0, 119786d161a7SShri Abhyankar 0, 119886d161a7SShri Abhyankar 0, 119949a6ff4bSBarry Smith MatGetColumnVector_MPIDense, 12003b49f96aSBarry Smith MatMissingDiagonal_MPIDense, 120186d161a7SShri Abhyankar /*114*/ 0, 120286d161a7SShri Abhyankar 0, 120386d161a7SShri Abhyankar 0, 120486d161a7SShri Abhyankar 0, 120586d161a7SShri Abhyankar 0, 120686d161a7SShri Abhyankar /*119*/ 0, 120786d161a7SShri Abhyankar 0, 120886d161a7SShri Abhyankar 0, 12090716a85fSBarry Smith 0, 12100716a85fSBarry Smith 0, 12110716a85fSBarry Smith /*124*/ 0, 12123964eb88SJed Brown MatGetColumnNorms_MPIDense, 12133964eb88SJed Brown 0, 12143964eb88SJed Brown 0, 12153964eb88SJed Brown 0, 12163964eb88SJed Brown /*129*/ 0, 12174222ddf1SHong Zhang 0, 12184222ddf1SHong Zhang 0, 1219cb20be35SHong Zhang MatTransposeMatMultNumeric_MPIDense_MPIDense, 12203964eb88SJed Brown 0, 12213964eb88SJed Brown /*134*/ 0, 12223964eb88SJed Brown 0, 12233964eb88SJed Brown 0, 12243964eb88SJed Brown 0, 12253964eb88SJed Brown 0, 12263964eb88SJed Brown /*139*/ 0, 1227f9426fe0SMark Adams 0, 122894e2cb23SJakub Kruzik 0, 122994e2cb23SJakub Kruzik 0, 123094e2cb23SJakub Kruzik 0, 12314222ddf1SHong Zhang MatCreateMPIMatConcatenateSeqMat_MPIDense, 12324222ddf1SHong Zhang /*145*/ 0, 12334222ddf1SHong Zhang 0, 12344222ddf1SHong Zhang 0 1235ba337c44SJed Brown }; 12368965ea79SLois Curfman McInnes 12377087cfbeSBarry Smith PetscErrorCode MatMPIDenseSetPreallocation_MPIDense(Mat mat,PetscScalar *data) 1238a23d5eceSKris Buschelman { 1239*637a0070SStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)mat->data; 1240*637a0070SStefano Zampini PetscBool iscuda; 1241dfbe8321SBarry Smith PetscErrorCode ierr; 1242a23d5eceSKris Buschelman 1243a23d5eceSKris Buschelman PetscFunctionBegin; 124434ef9618SShri Abhyankar ierr = PetscLayoutSetUp(mat->rmap);CHKERRQ(ierr); 124534ef9618SShri Abhyankar ierr = PetscLayoutSetUp(mat->cmap);CHKERRQ(ierr); 1246*637a0070SStefano Zampini if (!a->A) { 1247f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&a->A);CHKERRQ(ierr); 12483bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 1249*637a0070SStefano Zampini ierr = MatSetSizes(a->A,mat->rmap->n,mat->cmap->N,mat->rmap->n,mat->cmap->N);CHKERRQ(ierr); 1250*637a0070SStefano Zampini } 1251*637a0070SStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)mat,MATMPIDENSECUDA,&iscuda);CHKERRQ(ierr); 1252*637a0070SStefano Zampini ierr = MatSetType(a->A,iscuda ? MATSEQDENSECUDA : MATSEQDENSE);CHKERRQ(ierr); 1253*637a0070SStefano Zampini ierr = MatSeqDenseSetPreallocation(a->A,data);CHKERRQ(ierr); 1254*637a0070SStefano Zampini mat->preallocated = PETSC_TRUE; 1255a23d5eceSKris Buschelman PetscFunctionReturn(0); 1256a23d5eceSKris Buschelman } 1257a23d5eceSKris Buschelman 125865b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 1259cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIDense_Elemental(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 12608baccfbdSHong Zhang { 12618ea901baSHong Zhang Mat mat_elemental; 12628ea901baSHong Zhang PetscErrorCode ierr; 126332d7a744SHong Zhang PetscScalar *v; 126432d7a744SHong Zhang PetscInt m=A->rmap->n,N=A->cmap->N,rstart=A->rmap->rstart,i,*rows,*cols; 12658ea901baSHong Zhang 12668baccfbdSHong Zhang PetscFunctionBegin; 1267378336b6SHong Zhang if (reuse == MAT_REUSE_MATRIX) { 1268378336b6SHong Zhang mat_elemental = *newmat; 1269378336b6SHong Zhang ierr = MatZeroEntries(*newmat);CHKERRQ(ierr); 1270378336b6SHong Zhang } else { 1271378336b6SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental);CHKERRQ(ierr); 1272378336b6SHong Zhang ierr = MatSetSizes(mat_elemental,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 1273378336b6SHong Zhang ierr = MatSetType(mat_elemental,MATELEMENTAL);CHKERRQ(ierr); 1274378336b6SHong Zhang ierr = MatSetUp(mat_elemental);CHKERRQ(ierr); 127532d7a744SHong Zhang ierr = MatSetOption(mat_elemental,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 1276378336b6SHong Zhang } 1277378336b6SHong Zhang 127832d7a744SHong Zhang ierr = PetscMalloc2(m,&rows,N,&cols);CHKERRQ(ierr); 127932d7a744SHong Zhang for (i=0; i<N; i++) cols[i] = i; 128032d7a744SHong Zhang for (i=0; i<m; i++) rows[i] = rstart + i; 12818ea901baSHong Zhang 1282*637a0070SStefano Zampini /* PETSc-Elemental interface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */ 128332d7a744SHong Zhang ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr); 128432d7a744SHong Zhang ierr = MatSetValues(mat_elemental,m,rows,N,cols,v,ADD_VALUES);CHKERRQ(ierr); 12858ea901baSHong Zhang ierr = MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 12868ea901baSHong Zhang ierr = MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 128732d7a744SHong Zhang ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr); 128832d7a744SHong Zhang ierr = PetscFree2(rows,cols);CHKERRQ(ierr); 12898ea901baSHong Zhang 1290511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 129128be2f97SBarry Smith ierr = MatHeaderReplace(A,&mat_elemental);CHKERRQ(ierr); 12928ea901baSHong Zhang } else { 12938ea901baSHong Zhang *newmat = mat_elemental; 12948ea901baSHong Zhang } 12958baccfbdSHong Zhang PetscFunctionReturn(0); 12968baccfbdSHong Zhang } 129765b80a83SHong Zhang #endif 12988baccfbdSHong Zhang 1299af53bab2SHong Zhang static PetscErrorCode MatDenseGetColumn_MPIDense(Mat A,PetscInt col,PetscScalar **vals) 130086aefd0dSHong Zhang { 130186aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 130286aefd0dSHong Zhang PetscErrorCode ierr; 130386aefd0dSHong Zhang 130486aefd0dSHong Zhang PetscFunctionBegin; 130586aefd0dSHong Zhang ierr = MatDenseGetColumn(mat->A,col,vals);CHKERRQ(ierr); 130686aefd0dSHong Zhang PetscFunctionReturn(0); 130786aefd0dSHong Zhang } 130886aefd0dSHong Zhang 1309af53bab2SHong Zhang static PetscErrorCode MatDenseRestoreColumn_MPIDense(Mat A,PetscScalar **vals) 131086aefd0dSHong Zhang { 131186aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 131286aefd0dSHong Zhang PetscErrorCode ierr; 131386aefd0dSHong Zhang 131486aefd0dSHong Zhang PetscFunctionBegin; 131586aefd0dSHong Zhang ierr = MatDenseRestoreColumn(mat->A,vals);CHKERRQ(ierr); 131686aefd0dSHong Zhang PetscFunctionReturn(0); 131786aefd0dSHong Zhang } 131886aefd0dSHong Zhang 131994e2cb23SJakub Kruzik PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIDense(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 132094e2cb23SJakub Kruzik { 132194e2cb23SJakub Kruzik PetscErrorCode ierr; 132294e2cb23SJakub Kruzik Mat_MPIDense *mat; 132394e2cb23SJakub Kruzik PetscInt m,nloc,N; 132494e2cb23SJakub Kruzik 132594e2cb23SJakub Kruzik PetscFunctionBegin; 132694e2cb23SJakub Kruzik ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr); 132794e2cb23SJakub Kruzik ierr = MatGetLocalSize(inmat,NULL,&nloc);CHKERRQ(ierr); 132894e2cb23SJakub Kruzik if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 132994e2cb23SJakub Kruzik PetscInt sum; 133094e2cb23SJakub Kruzik 133194e2cb23SJakub Kruzik if (n == PETSC_DECIDE) { 133294e2cb23SJakub Kruzik ierr = PetscSplitOwnership(comm,&n,&N);CHKERRQ(ierr); 133394e2cb23SJakub Kruzik } 133494e2cb23SJakub Kruzik /* Check sum(n) = N */ 133594e2cb23SJakub Kruzik ierr = MPIU_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 133694e2cb23SJakub Kruzik if (sum != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns %D != global columns %D",sum,N); 133794e2cb23SJakub Kruzik 133894e2cb23SJakub Kruzik ierr = MatCreateDense(comm,m,n,PETSC_DETERMINE,N,NULL,outmat);CHKERRQ(ierr); 133994e2cb23SJakub Kruzik } 134094e2cb23SJakub Kruzik 134194e2cb23SJakub Kruzik /* numeric phase */ 134294e2cb23SJakub Kruzik mat = (Mat_MPIDense*)(*outmat)->data; 134394e2cb23SJakub Kruzik ierr = MatCopy(inmat,mat->A,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 134494e2cb23SJakub Kruzik ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 134594e2cb23SJakub Kruzik ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 134694e2cb23SJakub Kruzik PetscFunctionReturn(0); 134794e2cb23SJakub Kruzik } 134894e2cb23SJakub Kruzik 1349*637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1350*637a0070SStefano Zampini PetscErrorCode MatConvert_MPIDenseCUDA_MPIDense(Mat M,MatType type,MatReuse reuse,Mat *newmat) 1351*637a0070SStefano Zampini { 1352*637a0070SStefano Zampini Mat B; 1353*637a0070SStefano Zampini Mat_MPIDense *m; 1354*637a0070SStefano Zampini PetscErrorCode ierr; 1355*637a0070SStefano Zampini 1356*637a0070SStefano Zampini PetscFunctionBegin; 1357*637a0070SStefano Zampini if (reuse == MAT_INITIAL_MATRIX) { 1358*637a0070SStefano Zampini ierr = MatDuplicate(M,MAT_COPY_VALUES,newmat);CHKERRQ(ierr); 1359*637a0070SStefano Zampini } else if (reuse == MAT_REUSE_MATRIX) { 1360*637a0070SStefano Zampini ierr = MatCopy(M,*newmat,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 1361*637a0070SStefano Zampini } 1362*637a0070SStefano Zampini 1363*637a0070SStefano Zampini B = *newmat; 1364*637a0070SStefano Zampini ierr = MatBindToCPU_MPIDenseCUDA(B,PETSC_TRUE);CHKERRQ(ierr); 1365*637a0070SStefano Zampini ierr = PetscFree(B->defaultvectype);CHKERRQ(ierr); 1366*637a0070SStefano Zampini ierr = PetscStrallocpy(VECSTANDARD,&B->defaultvectype);CHKERRQ(ierr); 1367*637a0070SStefano Zampini ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIDENSE);CHKERRQ(ierr); 1368*637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpidensecuda_mpidense_C",NULL);CHKERRQ(ierr); 1369*637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaij_mpidensecuda_C",NULL);CHKERRQ(ierr); 1370*637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaij_C",NULL);CHKERRQ(ierr); 1371*637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArray_C",NULL);CHKERRQ(ierr); 1372*637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayRead_C",NULL);CHKERRQ(ierr); 1373*637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayWrite_C",NULL);CHKERRQ(ierr); 1374*637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArray_C",NULL);CHKERRQ(ierr); 1375*637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayRead_C",NULL);CHKERRQ(ierr); 1376*637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayWrite_C",NULL);CHKERRQ(ierr); 1377*637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAPlaceArray_C",NULL);CHKERRQ(ierr); 1378*637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAResetArray_C",NULL);CHKERRQ(ierr); 1379*637a0070SStefano Zampini m = (Mat_MPIDense*)(B)->data; 1380*637a0070SStefano Zampini if (m->A) { 1381*637a0070SStefano Zampini ierr = MatConvert(m->A,MATSEQDENSE,MAT_INPLACE_MATRIX,&m->A);CHKERRQ(ierr); 1382*637a0070SStefano Zampini ierr = MatSetUpMultiply_MPIDense(B);CHKERRQ(ierr); 1383*637a0070SStefano Zampini } 1384*637a0070SStefano Zampini B->ops->bindtocpu = NULL; 1385*637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_CPU; 1386*637a0070SStefano Zampini PetscFunctionReturn(0); 1387*637a0070SStefano Zampini } 1388*637a0070SStefano Zampini 1389*637a0070SStefano Zampini PetscErrorCode MatConvert_MPIDense_MPIDenseCUDA(Mat M,MatType type,MatReuse reuse,Mat *newmat) 1390*637a0070SStefano Zampini { 1391*637a0070SStefano Zampini Mat B; 1392*637a0070SStefano Zampini Mat_MPIDense *m; 1393*637a0070SStefano Zampini PetscErrorCode ierr; 1394*637a0070SStefano Zampini 1395*637a0070SStefano Zampini PetscFunctionBegin; 1396*637a0070SStefano Zampini if (reuse == MAT_INITIAL_MATRIX) { 1397*637a0070SStefano Zampini ierr = MatDuplicate(M,MAT_COPY_VALUES,newmat);CHKERRQ(ierr); 1398*637a0070SStefano Zampini } else if (reuse == MAT_REUSE_MATRIX) { 1399*637a0070SStefano Zampini ierr = MatCopy(M,*newmat,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 1400*637a0070SStefano Zampini } 1401*637a0070SStefano Zampini 1402*637a0070SStefano Zampini B = *newmat; 1403*637a0070SStefano Zampini ierr = PetscFree(B->defaultvectype);CHKERRQ(ierr); 1404*637a0070SStefano Zampini ierr = PetscStrallocpy(VECCUDA,&B->defaultvectype);CHKERRQ(ierr); 1405*637a0070SStefano Zampini ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIDENSECUDA);CHKERRQ(ierr); 1406*637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpidensecuda_mpidense_C", MatConvert_MPIDenseCUDA_MPIDense);CHKERRQ(ierr); 1407*637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaij_mpidensecuda_C",MatProductSetFromOptions_MPIAIJ_MPIDense);CHKERRQ(ierr); 1408*637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaij_C",MatProductSetFromOptions_MPIDense_MPIAIJ);CHKERRQ(ierr); 1409*637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArray_C", MatDenseCUDAGetArray_MPIDenseCUDA);CHKERRQ(ierr); 1410*637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayRead_C", MatDenseCUDAGetArrayRead_MPIDenseCUDA);CHKERRQ(ierr); 1411*637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayWrite_C", MatDenseCUDAGetArrayWrite_MPIDenseCUDA);CHKERRQ(ierr); 1412*637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArray_C", MatDenseCUDARestoreArray_MPIDenseCUDA);CHKERRQ(ierr); 1413*637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayRead_C", MatDenseCUDARestoreArrayRead_MPIDenseCUDA);CHKERRQ(ierr); 1414*637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayWrite_C", MatDenseCUDARestoreArrayWrite_MPIDenseCUDA);CHKERRQ(ierr); 1415*637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAPlaceArray_C", MatDenseCUDAPlaceArray_MPIDenseCUDA);CHKERRQ(ierr); 1416*637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAResetArray_C", MatDenseCUDAResetArray_MPIDenseCUDA);CHKERRQ(ierr); 1417*637a0070SStefano Zampini m = (Mat_MPIDense*)(B)->data; 1418*637a0070SStefano Zampini if (m->A) { 1419*637a0070SStefano Zampini ierr = MatConvert(m->A,MATSEQDENSECUDA,MAT_INPLACE_MATRIX,&m->A);CHKERRQ(ierr); 1420*637a0070SStefano Zampini ierr = MatSetUpMultiply_MPIDense(B);CHKERRQ(ierr); 1421*637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_BOTH; 1422*637a0070SStefano Zampini } else { 1423*637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_UNALLOCATED; 1424*637a0070SStefano Zampini } 1425*637a0070SStefano Zampini ierr = MatBindToCPU_MPIDenseCUDA(B,PETSC_FALSE);CHKERRQ(ierr); 1426*637a0070SStefano Zampini 1427*637a0070SStefano Zampini B->ops->bindtocpu = MatBindToCPU_MPIDenseCUDA; 1428*637a0070SStefano Zampini PetscFunctionReturn(0); 1429*637a0070SStefano Zampini } 1430*637a0070SStefano Zampini #endif 1431*637a0070SStefano Zampini 14328cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIDense(Mat mat) 1433273d9f13SBarry Smith { 1434273d9f13SBarry Smith Mat_MPIDense *a; 1435dfbe8321SBarry Smith PetscErrorCode ierr; 1436273d9f13SBarry Smith 1437273d9f13SBarry Smith PetscFunctionBegin; 1438b00a9115SJed Brown ierr = PetscNewLog(mat,&a);CHKERRQ(ierr); 1439b0a32e0cSBarry Smith mat->data = (void*)a; 1440273d9f13SBarry Smith ierr = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1441273d9f13SBarry Smith 1442273d9f13SBarry Smith mat->insertmode = NOT_SET_VALUES; 1443ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&a->rank);CHKERRQ(ierr); 1444ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&a->size);CHKERRQ(ierr); 1445273d9f13SBarry Smith 1446273d9f13SBarry Smith /* build cache for off array entries formed */ 1447273d9f13SBarry Smith a->donotstash = PETSC_FALSE; 14482205254eSKarl Rupp 1449ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)mat),1,&mat->stash);CHKERRQ(ierr); 1450273d9f13SBarry Smith 1451273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 1452273d9f13SBarry Smith a->lvec = 0; 1453273d9f13SBarry Smith a->Mvctx = 0; 1454273d9f13SBarry Smith a->roworiented = PETSC_TRUE; 1455273d9f13SBarry Smith 145649a6ff4bSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",MatDenseGetLDA_MPIDense);CHKERRQ(ierr); 1457bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",MatDenseGetArray_MPIDense);CHKERRQ(ierr); 14588572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",MatDenseRestoreArray_MPIDense);CHKERRQ(ierr); 14598572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",MatDenseGetArrayRead_MPIDense);CHKERRQ(ierr); 14608572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",MatDenseRestoreArrayRead_MPIDense);CHKERRQ(ierr); 1461d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",MatDensePlaceArray_MPIDense);CHKERRQ(ierr); 1462d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",MatDenseResetArray_MPIDense);CHKERRQ(ierr); 14638baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 14648baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",MatConvert_MPIDense_Elemental);CHKERRQ(ierr); 14658baccfbdSHong Zhang #endif 1466*637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1467*637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_mpidensecuda_C",MatConvert_MPIDense_MPIDenseCUDA);CHKERRQ(ierr); 1468*637a0070SStefano Zampini #endif 1469bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",MatMPIDenseSetPreallocation_MPIDense);CHKERRQ(ierr); 14704222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaij_mpidense_C",MatProductSetFromOptions_MPIAIJ_MPIDense);CHKERRQ(ierr); 14714222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaij_C",MatProductSetFromOptions_MPIDense_MPIAIJ);CHKERRQ(ierr); 1472bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C",MatMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr); 1473bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C",MatMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr); 147452c5f739Sprj- ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_nest_mpidense_C",MatMatMultSymbolic_Nest_Dense);CHKERRQ(ierr); 147552c5f739Sprj- ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_nest_mpidense_C",MatMatMultNumeric_Nest_Dense);CHKERRQ(ierr); 14768949adfdSHong Zhang 14778949adfdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultSymbolic_mpiaij_mpidense_C",MatTransposeMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr); 14788949adfdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultNumeric_mpiaij_mpidense_C",MatTransposeMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr); 1479af53bab2SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",MatDenseGetColumn_MPIDense);CHKERRQ(ierr); 1480af53bab2SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",MatDenseRestoreColumn_MPIDense);CHKERRQ(ierr); 148138aed534SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)mat,MATMPIDENSE);CHKERRQ(ierr); 1482273d9f13SBarry Smith PetscFunctionReturn(0); 1483273d9f13SBarry Smith } 1484273d9f13SBarry Smith 1485209238afSKris Buschelman /*MC 1486*637a0070SStefano Zampini MATMPIDENSECUDA - MATMPIDENSECUDA = "mpidensecuda" - A matrix type to be used for distributed dense matrices on GPUs. 1487*637a0070SStefano Zampini 1488*637a0070SStefano Zampini Options Database Keys: 1489*637a0070SStefano Zampini . -mat_type mpidensecuda - sets the matrix type to "mpidensecuda" during a call to MatSetFromOptions() 1490*637a0070SStefano Zampini 1491*637a0070SStefano Zampini Level: beginner 1492*637a0070SStefano Zampini 1493*637a0070SStefano Zampini .seealso: 1494*637a0070SStefano Zampini 1495*637a0070SStefano Zampini M*/ 1496*637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1497*637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreate_MPIDenseCUDA(Mat B) 1498*637a0070SStefano Zampini { 1499*637a0070SStefano Zampini PetscErrorCode ierr; 1500*637a0070SStefano Zampini 1501*637a0070SStefano Zampini PetscFunctionBegin; 1502*637a0070SStefano Zampini ierr = MatCreate_MPIDense(B);CHKERRQ(ierr); 1503*637a0070SStefano Zampini ierr = MatConvert_MPIDense_MPIDenseCUDA(B,MATMPIDENSECUDA,MAT_INPLACE_MATRIX,&B);CHKERRQ(ierr); 1504*637a0070SStefano Zampini PetscFunctionReturn(0); 1505*637a0070SStefano Zampini } 1506*637a0070SStefano Zampini #endif 1507*637a0070SStefano Zampini 1508*637a0070SStefano Zampini /*MC 1509002d173eSKris Buschelman MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices. 1510209238afSKris Buschelman 1511209238afSKris Buschelman This matrix type is identical to MATSEQDENSE when constructed with a single process communicator, 1512209238afSKris Buschelman and MATMPIDENSE otherwise. 1513209238afSKris Buschelman 1514209238afSKris Buschelman Options Database Keys: 1515209238afSKris Buschelman . -mat_type dense - sets the matrix type to "dense" during a call to MatSetFromOptions() 1516209238afSKris Buschelman 1517209238afSKris Buschelman Level: beginner 1518209238afSKris Buschelman 151901b82886SBarry Smith 152052c5f739Sprj- .seealso: MATSEQDENSE,MATMPIDENSE 1521209238afSKris Buschelman M*/ 1522209238afSKris Buschelman 1523273d9f13SBarry Smith /*@C 1524273d9f13SBarry Smith MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries 1525273d9f13SBarry Smith 1526273d9f13SBarry Smith Not collective 1527273d9f13SBarry Smith 1528273d9f13SBarry Smith Input Parameters: 15291c4f3114SJed Brown . B - the matrix 15300298fd71SBarry Smith - data - optional location of matrix data. Set data=NULL for PETSc 1531273d9f13SBarry Smith to control all matrix memory allocation. 1532273d9f13SBarry Smith 1533273d9f13SBarry Smith Notes: 1534273d9f13SBarry Smith The dense format is fully compatible with standard Fortran 77 1535273d9f13SBarry Smith storage by columns. 1536273d9f13SBarry Smith 1537273d9f13SBarry Smith The data input variable is intended primarily for Fortran programmers 1538273d9f13SBarry Smith who wish to allocate their own matrix memory space. Most users should 15390298fd71SBarry Smith set data=NULL. 1540273d9f13SBarry Smith 1541273d9f13SBarry Smith Level: intermediate 1542273d9f13SBarry Smith 1543273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 1544273d9f13SBarry Smith @*/ 15451c4f3114SJed Brown PetscErrorCode MatMPIDenseSetPreallocation(Mat B,PetscScalar *data) 1546273d9f13SBarry Smith { 15474ac538c5SBarry Smith PetscErrorCode ierr; 1548273d9f13SBarry Smith 1549273d9f13SBarry Smith PetscFunctionBegin; 15501c4f3114SJed Brown ierr = PetscTryMethod(B,"MatMPIDenseSetPreallocation_C",(Mat,PetscScalar*),(B,data));CHKERRQ(ierr); 1551273d9f13SBarry Smith PetscFunctionReturn(0); 1552273d9f13SBarry Smith } 1553273d9f13SBarry Smith 1554d3042a70SBarry Smith /*@ 1555*637a0070SStefano Zampini MatDensePlaceArray - Allows one to replace the array in a dense matrix with an 1556d3042a70SBarry Smith array provided by the user. This is useful to avoid copying an array 1557d3042a70SBarry Smith into a matrix 1558d3042a70SBarry Smith 1559d3042a70SBarry Smith Not Collective 1560d3042a70SBarry Smith 1561d3042a70SBarry Smith Input Parameters: 1562d3042a70SBarry Smith + mat - the matrix 1563d3042a70SBarry Smith - array - the array in column major order 1564d3042a70SBarry Smith 1565d3042a70SBarry Smith Notes: 1566d3042a70SBarry Smith You can return to the original array with a call to MatDenseResetArray(). The user is responsible for freeing this array; it will not be 1567d3042a70SBarry Smith freed when the matrix is destroyed. 1568d3042a70SBarry Smith 1569d3042a70SBarry Smith Level: developer 1570d3042a70SBarry Smith 1571d3042a70SBarry Smith .seealso: MatDenseGetArray(), MatDenseResetArray(), VecPlaceArray(), VecGetArray(), VecRestoreArray(), VecReplaceArray(), VecResetArray() 1572d3042a70SBarry Smith 1573d3042a70SBarry Smith @*/ 1574*637a0070SStefano Zampini PetscErrorCode MatDensePlaceArray(Mat mat,const PetscScalar *array) 1575d3042a70SBarry Smith { 1576d3042a70SBarry Smith PetscErrorCode ierr; 1577*637a0070SStefano Zampini 1578d3042a70SBarry Smith PetscFunctionBegin; 1579d3042a70SBarry Smith ierr = PetscUseMethod(mat,"MatDensePlaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr); 1580d3042a70SBarry Smith ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 1581*637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1582*637a0070SStefano Zampini mat->offloadmask = PETSC_OFFLOAD_CPU; 1583*637a0070SStefano Zampini #endif 1584d3042a70SBarry Smith PetscFunctionReturn(0); 1585d3042a70SBarry Smith } 1586d3042a70SBarry Smith 1587d3042a70SBarry Smith /*@ 1588d3042a70SBarry Smith MatDenseResetArray - Resets the matrix array to that it previously had before the call to MatDensePlaceArray() 1589d3042a70SBarry Smith 1590d3042a70SBarry Smith Not Collective 1591d3042a70SBarry Smith 1592d3042a70SBarry Smith Input Parameters: 1593d3042a70SBarry Smith . mat - the matrix 1594d3042a70SBarry Smith 1595d3042a70SBarry Smith Notes: 1596d3042a70SBarry Smith You can only call this after a call to MatDensePlaceArray() 1597d3042a70SBarry Smith 1598d3042a70SBarry Smith Level: developer 1599d3042a70SBarry Smith 1600d3042a70SBarry Smith .seealso: MatDenseGetArray(), MatDensePlaceArray(), VecPlaceArray(), VecGetArray(), VecRestoreArray(), VecReplaceArray(), VecResetArray() 1601d3042a70SBarry Smith 1602d3042a70SBarry Smith @*/ 1603d3042a70SBarry Smith PetscErrorCode MatDenseResetArray(Mat mat) 1604d3042a70SBarry Smith { 1605d3042a70SBarry Smith PetscErrorCode ierr; 1606*637a0070SStefano Zampini 1607d3042a70SBarry Smith PetscFunctionBegin; 1608d3042a70SBarry Smith ierr = PetscUseMethod(mat,"MatDenseResetArray_C",(Mat),(mat));CHKERRQ(ierr); 1609d3042a70SBarry Smith ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 1610d3042a70SBarry Smith PetscFunctionReturn(0); 1611d3042a70SBarry Smith } 1612d3042a70SBarry Smith 1613*637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 16148965ea79SLois Curfman McInnes /*@C 1615*637a0070SStefano Zampini MatDenseCUDAPlaceArray - Allows one to replace the GPU array in a dense matrix with an 1616*637a0070SStefano Zampini array provided by the user. This is useful to avoid copying an array 1617*637a0070SStefano Zampini into a matrix 1618*637a0070SStefano Zampini 1619*637a0070SStefano Zampini Not Collective 1620*637a0070SStefano Zampini 1621*637a0070SStefano Zampini Input Parameters: 1622*637a0070SStefano Zampini + mat - the matrix 1623*637a0070SStefano Zampini - array - the array in column major order 1624*637a0070SStefano Zampini 1625*637a0070SStefano Zampini Notes: 1626*637a0070SStefano Zampini You can return to the original array with a call to MatDenseCUDAResetArray(). The user is responsible for freeing this array; it will not be 1627*637a0070SStefano Zampini freed when the matrix is destroyed. The array must have been allocated with cudaMalloc(). 1628*637a0070SStefano Zampini 1629*637a0070SStefano Zampini Level: developer 1630*637a0070SStefano Zampini 1631*637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDAResetArray() 1632*637a0070SStefano Zampini @*/ 1633*637a0070SStefano Zampini PetscErrorCode MatDenseCUDAPlaceArray(Mat mat,const PetscScalar *array) 1634*637a0070SStefano Zampini { 1635*637a0070SStefano Zampini PetscErrorCode ierr; 1636*637a0070SStefano Zampini 1637*637a0070SStefano Zampini PetscFunctionBegin; 1638*637a0070SStefano Zampini ierr = PetscUseMethod(mat,"MatDenseCUDAPlaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr); 1639*637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 1640*637a0070SStefano Zampini mat->offloadmask = PETSC_OFFLOAD_GPU; 1641*637a0070SStefano Zampini PetscFunctionReturn(0); 1642*637a0070SStefano Zampini } 1643*637a0070SStefano Zampini 1644*637a0070SStefano Zampini /*@C 1645*637a0070SStefano Zampini MatDenseCUDAResetArray - Resets the matrix array to that it previously had before the call to MatDenseCUDAPlaceArray() 1646*637a0070SStefano Zampini 1647*637a0070SStefano Zampini Not Collective 1648*637a0070SStefano Zampini 1649*637a0070SStefano Zampini Input Parameters: 1650*637a0070SStefano Zampini . mat - the matrix 1651*637a0070SStefano Zampini 1652*637a0070SStefano Zampini Notes: 1653*637a0070SStefano Zampini You can only call this after a call to MatDenseCUDAPlaceArray() 1654*637a0070SStefano Zampini 1655*637a0070SStefano Zampini Level: developer 1656*637a0070SStefano Zampini 1657*637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDAPlaceArray() 1658*637a0070SStefano Zampini 1659*637a0070SStefano Zampini @*/ 1660*637a0070SStefano Zampini PetscErrorCode MatDenseCUDAResetArray(Mat mat) 1661*637a0070SStefano Zampini { 1662*637a0070SStefano Zampini PetscErrorCode ierr; 1663*637a0070SStefano Zampini 1664*637a0070SStefano Zampini PetscFunctionBegin; 1665*637a0070SStefano Zampini ierr = PetscUseMethod(mat,"MatDenseCUDAResetArray_C",(Mat),(mat));CHKERRQ(ierr); 1666*637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 1667*637a0070SStefano Zampini PetscFunctionReturn(0); 1668*637a0070SStefano Zampini } 1669*637a0070SStefano Zampini 1670*637a0070SStefano Zampini /*@C 1671*637a0070SStefano Zampini MatDenseCUDAGetArrayWrite - Provides write access to the CUDA buffer inside a dense matrix. 1672*637a0070SStefano Zampini 1673*637a0070SStefano Zampini Not Collective 1674*637a0070SStefano Zampini 1675*637a0070SStefano Zampini Input Parameters: 1676*637a0070SStefano Zampini . A - the matrix 1677*637a0070SStefano Zampini 1678*637a0070SStefano Zampini Output Parameters 1679*637a0070SStefano Zampini . array - the GPU array in column major order 1680*637a0070SStefano Zampini 1681*637a0070SStefano Zampini Notes: 1682*637a0070SStefano Zampini The data on the GPU may not be updated due to operations done on the CPU. If you need updated data, use MatDenseCUDAGetArray(). The array must be restored with MatDenseCUDARestoreArrayWrite() when no longer needed. 1683*637a0070SStefano Zampini 1684*637a0070SStefano Zampini Level: developer 1685*637a0070SStefano Zampini 1686*637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayRead(), MatDenseCUDARestoreArrayRead() 1687*637a0070SStefano Zampini @*/ 1688*637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArrayWrite(Mat A, PetscScalar **a) 1689*637a0070SStefano Zampini { 1690*637a0070SStefano Zampini PetscErrorCode ierr; 1691*637a0070SStefano Zampini 1692*637a0070SStefano Zampini PetscFunctionBegin; 1693*637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDAGetArrayWrite_C",(Mat,PetscScalar**),(A,a));CHKERRQ(ierr); 1694*637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr); 1695*637a0070SStefano Zampini PetscFunctionReturn(0); 1696*637a0070SStefano Zampini } 1697*637a0070SStefano Zampini 1698*637a0070SStefano Zampini /*@C 1699*637a0070SStefano Zampini MatDenseCUDARestoreArrayWrite - Restore write access to the CUDA buffer inside a dense matrix previously obtained with MatDenseCUDAGetArrayWrite(). 1700*637a0070SStefano Zampini 1701*637a0070SStefano Zampini Not Collective 1702*637a0070SStefano Zampini 1703*637a0070SStefano Zampini Input Parameters: 1704*637a0070SStefano Zampini + A - the matrix 1705*637a0070SStefano Zampini - array - the GPU array in column major order 1706*637a0070SStefano Zampini 1707*637a0070SStefano Zampini Notes: 1708*637a0070SStefano Zampini 1709*637a0070SStefano Zampini Level: developer 1710*637a0070SStefano Zampini 1711*637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead(), MatDenseCUDAGetArrayRead() 1712*637a0070SStefano Zampini @*/ 1713*637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArrayWrite(Mat A, PetscScalar **a) 1714*637a0070SStefano Zampini { 1715*637a0070SStefano Zampini PetscErrorCode ierr; 1716*637a0070SStefano Zampini 1717*637a0070SStefano Zampini PetscFunctionBegin; 1718*637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDARestoreArrayWrite_C",(Mat,PetscScalar**),(A,a));CHKERRQ(ierr); 1719*637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr); 1720*637a0070SStefano Zampini A->offloadmask = PETSC_OFFLOAD_GPU; 1721*637a0070SStefano Zampini PetscFunctionReturn(0); 1722*637a0070SStefano Zampini } 1723*637a0070SStefano Zampini 1724*637a0070SStefano Zampini /*@C 1725*637a0070SStefano Zampini MatDenseCUDAGetArrayRead - Provides read-only access to the CUDA buffer inside a dense matrix. The array must be restored with MatDenseCUDARestoreArrayRead() when no longer needed. 1726*637a0070SStefano Zampini 1727*637a0070SStefano Zampini Not Collective 1728*637a0070SStefano Zampini 1729*637a0070SStefano Zampini Input Parameters: 1730*637a0070SStefano Zampini . A - the matrix 1731*637a0070SStefano Zampini 1732*637a0070SStefano Zampini Output Parameters 1733*637a0070SStefano Zampini . array - the GPU array in column major order 1734*637a0070SStefano Zampini 1735*637a0070SStefano Zampini Notes: 1736*637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). 1737*637a0070SStefano Zampini 1738*637a0070SStefano Zampini Level: developer 1739*637a0070SStefano Zampini 1740*637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead() 1741*637a0070SStefano Zampini @*/ 1742*637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArrayRead(Mat A, const PetscScalar **a) 1743*637a0070SStefano Zampini { 1744*637a0070SStefano Zampini PetscErrorCode ierr; 1745*637a0070SStefano Zampini 1746*637a0070SStefano Zampini PetscFunctionBegin; 1747*637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDAGetArrayRead_C",(Mat,const PetscScalar**),(A,a));CHKERRQ(ierr); 1748*637a0070SStefano Zampini PetscFunctionReturn(0); 1749*637a0070SStefano Zampini } 1750*637a0070SStefano Zampini 1751*637a0070SStefano Zampini /*@C 1752*637a0070SStefano Zampini MatDenseCUDARestoreArrayRead - Restore read-only access to the CUDA buffer inside a dense matrix previously obtained with a call to MatDenseCUDAGetArrayRead(). 1753*637a0070SStefano Zampini 1754*637a0070SStefano Zampini Not Collective 1755*637a0070SStefano Zampini 1756*637a0070SStefano Zampini Input Parameters: 1757*637a0070SStefano Zampini + A - the matrix 1758*637a0070SStefano Zampini - array - the GPU array in column major order 1759*637a0070SStefano Zampini 1760*637a0070SStefano Zampini Notes: 1761*637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). 1762*637a0070SStefano Zampini 1763*637a0070SStefano Zampini Level: developer 1764*637a0070SStefano Zampini 1765*637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDAGetArrayRead() 1766*637a0070SStefano Zampini @*/ 1767*637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArrayRead(Mat A, const PetscScalar **a) 1768*637a0070SStefano Zampini { 1769*637a0070SStefano Zampini PetscErrorCode ierr; 1770*637a0070SStefano Zampini 1771*637a0070SStefano Zampini PetscFunctionBegin; 1772*637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDARestoreArrayRead_C",(Mat,const PetscScalar**),(A,a));CHKERRQ(ierr); 1773*637a0070SStefano Zampini PetscFunctionReturn(0); 1774*637a0070SStefano Zampini } 1775*637a0070SStefano Zampini 1776*637a0070SStefano Zampini /*@C 1777*637a0070SStefano Zampini MatDenseCUDAGetArray - Provides access to the CUDA buffer inside a dense matrix. The array must be restored with MatDenseCUDARestoreArray() when no longer needed. 1778*637a0070SStefano Zampini 1779*637a0070SStefano Zampini Not Collective 1780*637a0070SStefano Zampini 1781*637a0070SStefano Zampini Input Parameters: 1782*637a0070SStefano Zampini . A - the matrix 1783*637a0070SStefano Zampini 1784*637a0070SStefano Zampini Output Parameters 1785*637a0070SStefano Zampini . array - the GPU array in column major order 1786*637a0070SStefano Zampini 1787*637a0070SStefano Zampini Notes: 1788*637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). For read-only access, use MatDenseCUDAGetArrayRead(). 1789*637a0070SStefano Zampini 1790*637a0070SStefano Zampini Level: developer 1791*637a0070SStefano Zampini 1792*637a0070SStefano Zampini .seealso: MatDenseCUDAGetArrayRead(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead() 1793*637a0070SStefano Zampini @*/ 1794*637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArray(Mat A, PetscScalar **a) 1795*637a0070SStefano Zampini { 1796*637a0070SStefano Zampini PetscErrorCode ierr; 1797*637a0070SStefano Zampini 1798*637a0070SStefano Zampini PetscFunctionBegin; 1799*637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDAGetArray_C",(Mat,PetscScalar**),(A,a));CHKERRQ(ierr); 1800*637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr); 1801*637a0070SStefano Zampini PetscFunctionReturn(0); 1802*637a0070SStefano Zampini } 1803*637a0070SStefano Zampini 1804*637a0070SStefano Zampini /*@C 1805*637a0070SStefano Zampini MatDenseCUDARestoreArray - Restore access to the CUDA buffer inside a dense matrix previously obtained with MatDenseCUDAGetArray(). 1806*637a0070SStefano Zampini 1807*637a0070SStefano Zampini Not Collective 1808*637a0070SStefano Zampini 1809*637a0070SStefano Zampini Input Parameters: 1810*637a0070SStefano Zampini + A - the matrix 1811*637a0070SStefano Zampini - array - the GPU array in column major order 1812*637a0070SStefano Zampini 1813*637a0070SStefano Zampini Notes: 1814*637a0070SStefano Zampini 1815*637a0070SStefano Zampini Level: developer 1816*637a0070SStefano Zampini 1817*637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead(), MatDenseCUDAGetArrayRead() 1818*637a0070SStefano Zampini @*/ 1819*637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArray(Mat A, PetscScalar **a) 1820*637a0070SStefano Zampini { 1821*637a0070SStefano Zampini PetscErrorCode ierr; 1822*637a0070SStefano Zampini 1823*637a0070SStefano Zampini PetscFunctionBegin; 1824*637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDARestoreArray_C",(Mat,PetscScalar**),(A,a));CHKERRQ(ierr); 1825*637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr); 1826*637a0070SStefano Zampini A->offloadmask = PETSC_OFFLOAD_GPU; 1827*637a0070SStefano Zampini PetscFunctionReturn(0); 1828*637a0070SStefano Zampini } 1829*637a0070SStefano Zampini #endif 1830*637a0070SStefano Zampini 1831*637a0070SStefano Zampini /*@C 1832*637a0070SStefano Zampini MatCreateDense - Creates a matrix in dense format. 18338965ea79SLois Curfman McInnes 1834d083f849SBarry Smith Collective 1835db81eaa0SLois Curfman McInnes 18368965ea79SLois Curfman McInnes Input Parameters: 1837db81eaa0SLois Curfman McInnes + comm - MPI communicator 18388965ea79SLois Curfman McInnes . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1839db81eaa0SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 18408965ea79SLois Curfman McInnes . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 1841db81eaa0SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 18426cfe35ddSJose E. Roman - data - optional location of matrix data. Set data=NULL (PETSC_NULL_SCALAR for Fortran users) for PETSc 1843dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 18448965ea79SLois Curfman McInnes 18458965ea79SLois Curfman McInnes Output Parameter: 1846477f1c0bSLois Curfman McInnes . A - the matrix 18478965ea79SLois Curfman McInnes 1848b259b22eSLois Curfman McInnes Notes: 184939ddd567SLois Curfman McInnes The dense format is fully compatible with standard Fortran 77 185039ddd567SLois Curfman McInnes storage by columns. 18518965ea79SLois Curfman McInnes 185218f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 185318f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 18546cfe35ddSJose E. Roman set data=NULL (PETSC_NULL_SCALAR for Fortran users). 185518f449edSLois Curfman McInnes 18568965ea79SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 18578965ea79SLois Curfman McInnes (possibly both). 18588965ea79SLois Curfman McInnes 1859027ccd11SLois Curfman McInnes Level: intermediate 1860027ccd11SLois Curfman McInnes 186139ddd567SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 18628965ea79SLois Curfman McInnes @*/ 186369b1f4b7SBarry Smith PetscErrorCode MatCreateDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 18648965ea79SLois Curfman McInnes { 18656849ba73SBarry Smith PetscErrorCode ierr; 186613f74950SBarry Smith PetscMPIInt size; 18678965ea79SLois Curfman McInnes 18683a40ed3dSBarry Smith PetscFunctionBegin; 1869f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 18708491ab44SLisandro Dalcin PetscValidLogicalCollectiveBool(*A,!!data,6); 1871f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 1872273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1873273d9f13SBarry Smith if (size > 1) { 1874273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIDENSE);CHKERRQ(ierr); 1875273d9f13SBarry Smith ierr = MatMPIDenseSetPreallocation(*A,data);CHKERRQ(ierr); 18766cfe35ddSJose E. Roman if (data) { /* user provided data array, so no need to assemble */ 18776cfe35ddSJose E. Roman ierr = MatSetUpMultiply_MPIDense(*A);CHKERRQ(ierr); 18786cfe35ddSJose E. Roman (*A)->assembled = PETSC_TRUE; 18796cfe35ddSJose E. Roman } 1880273d9f13SBarry Smith } else { 1881273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr); 1882273d9f13SBarry Smith ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr); 18838c469469SLois Curfman McInnes } 18843a40ed3dSBarry Smith PetscFunctionReturn(0); 18858965ea79SLois Curfman McInnes } 18868965ea79SLois Curfman McInnes 1887*637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1888*637a0070SStefano Zampini /*@C 1889*637a0070SStefano Zampini MatCreateDenseCUDA - Creates a matrix in dense format using CUDA. 1890*637a0070SStefano Zampini 1891*637a0070SStefano Zampini Collective 1892*637a0070SStefano Zampini 1893*637a0070SStefano Zampini Input Parameters: 1894*637a0070SStefano Zampini + comm - MPI communicator 1895*637a0070SStefano Zampini . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1896*637a0070SStefano Zampini . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 1897*637a0070SStefano Zampini . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 1898*637a0070SStefano Zampini . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 1899*637a0070SStefano Zampini - data - optional location of GPU matrix data. Set data=NULL for PETSc 1900*637a0070SStefano Zampini to control matrix memory allocation. 1901*637a0070SStefano Zampini 1902*637a0070SStefano Zampini Output Parameter: 1903*637a0070SStefano Zampini . A - the matrix 1904*637a0070SStefano Zampini 1905*637a0070SStefano Zampini Notes: 1906*637a0070SStefano Zampini 1907*637a0070SStefano Zampini Level: intermediate 1908*637a0070SStefano Zampini 1909*637a0070SStefano Zampini .seealso: MatCreate(), MatCreateDense() 1910*637a0070SStefano Zampini @*/ 1911*637a0070SStefano Zampini PetscErrorCode MatCreateDenseCUDA(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 1912*637a0070SStefano Zampini { 1913*637a0070SStefano Zampini PetscErrorCode ierr; 1914*637a0070SStefano Zampini PetscMPIInt size; 1915*637a0070SStefano Zampini 1916*637a0070SStefano Zampini PetscFunctionBegin; 1917*637a0070SStefano Zampini ierr = MatCreate(comm,A);CHKERRQ(ierr); 1918*637a0070SStefano Zampini PetscValidLogicalCollectiveBool(*A,!!data,6); 1919*637a0070SStefano Zampini ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 1920*637a0070SStefano Zampini ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1921*637a0070SStefano Zampini if (size > 1) { 1922*637a0070SStefano Zampini ierr = MatSetType(*A,MATMPIDENSECUDA);CHKERRQ(ierr); 1923*637a0070SStefano Zampini ierr = MatMPIDenseCUDASetPreallocation(*A,data);CHKERRQ(ierr); 1924*637a0070SStefano Zampini if (data) { /* user provided data array, so no need to assemble */ 1925*637a0070SStefano Zampini ierr = MatSetUpMultiply_MPIDense(*A);CHKERRQ(ierr); 1926*637a0070SStefano Zampini (*A)->assembled = PETSC_TRUE; 1927*637a0070SStefano Zampini } 1928*637a0070SStefano Zampini } else { 1929*637a0070SStefano Zampini ierr = MatSetType(*A,MATSEQDENSECUDA);CHKERRQ(ierr); 1930*637a0070SStefano Zampini ierr = MatSeqDenseCUDASetPreallocation(*A,data);CHKERRQ(ierr); 1931*637a0070SStefano Zampini } 1932*637a0070SStefano Zampini PetscFunctionReturn(0); 1933*637a0070SStefano Zampini } 1934*637a0070SStefano Zampini #endif 1935*637a0070SStefano Zampini 19366849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat) 19378965ea79SLois Curfman McInnes { 19388965ea79SLois Curfman McInnes Mat mat; 19393501a2bdSLois Curfman McInnes Mat_MPIDense *a,*oldmat = (Mat_MPIDense*)A->data; 1940dfbe8321SBarry Smith PetscErrorCode ierr; 19418965ea79SLois Curfman McInnes 19423a40ed3dSBarry Smith PetscFunctionBegin; 19438965ea79SLois Curfman McInnes *newmat = 0; 1944ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&mat);CHKERRQ(ierr); 1945d0f46423SBarry Smith ierr = MatSetSizes(mat,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 19467adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)A)->type_name);CHKERRQ(ierr); 1947834f8fabSBarry Smith a = (Mat_MPIDense*)mat->data; 19485aa7edbeSHong Zhang 1949d5f3da31SBarry Smith mat->factortype = A->factortype; 1950c456f294SBarry Smith mat->assembled = PETSC_TRUE; 1951273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 19528965ea79SLois Curfman McInnes 19538965ea79SLois Curfman McInnes a->size = oldmat->size; 19548965ea79SLois Curfman McInnes a->rank = oldmat->rank; 1955e0fa3b82SLois Curfman McInnes mat->insertmode = NOT_SET_VALUES; 19563782ba37SSatish Balay a->donotstash = oldmat->donotstash; 1957e04c1aa4SHong Zhang 19581e1e43feSBarry Smith ierr = PetscLayoutReference(A->rmap,&mat->rmap);CHKERRQ(ierr); 19591e1e43feSBarry Smith ierr = PetscLayoutReference(A->cmap,&mat->cmap);CHKERRQ(ierr); 19608965ea79SLois Curfman McInnes 19615609ef8eSBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 19623bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 1963*637a0070SStefano Zampini ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 196401b82886SBarry Smith 19658965ea79SLois Curfman McInnes *newmat = mat; 19663a40ed3dSBarry Smith PetscFunctionReturn(0); 19678965ea79SLois Curfman McInnes } 19688965ea79SLois Curfman McInnes 1969eb91f321SVaclav Hapla PetscErrorCode MatLoad_MPIDense(Mat newMat, PetscViewer viewer) 1970eb91f321SVaclav Hapla { 1971eb91f321SVaclav Hapla PetscErrorCode ierr; 197287d5ce66SSatish Balay PetscBool isbinary; 197387d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 197487d5ce66SSatish Balay PetscBool ishdf5; 197587d5ce66SSatish Balay #endif 1976eb91f321SVaclav Hapla 1977eb91f321SVaclav Hapla PetscFunctionBegin; 1978eb91f321SVaclav Hapla PetscValidHeaderSpecific(newMat,MAT_CLASSID,1); 1979eb91f321SVaclav Hapla PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2); 1980eb91f321SVaclav Hapla /* force binary viewer to load .info file if it has not yet done so */ 1981eb91f321SVaclav Hapla ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr); 1982eb91f321SVaclav Hapla ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 198387d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 1984eb91f321SVaclav Hapla ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERHDF5, &ishdf5);CHKERRQ(ierr); 198587d5ce66SSatish Balay #endif 1986eb91f321SVaclav Hapla if (isbinary) { 19878491ab44SLisandro Dalcin ierr = MatLoad_Dense_Binary(newMat,viewer);CHKERRQ(ierr); 1988eb91f321SVaclav Hapla #if defined(PETSC_HAVE_HDF5) 198987d5ce66SSatish Balay } else if (ishdf5) { 1990eb91f321SVaclav Hapla ierr = MatLoad_Dense_HDF5(newMat,viewer);CHKERRQ(ierr); 1991eb91f321SVaclav Hapla #endif 199287d5ce66SSatish Balay } else SETERRQ2(PetscObjectComm((PetscObject)newMat),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)newMat)->type_name); 1993eb91f321SVaclav Hapla PetscFunctionReturn(0); 1994eb91f321SVaclav Hapla } 1995eb91f321SVaclav Hapla 1996ace3abfcSBarry Smith PetscErrorCode MatEqual_MPIDense(Mat A,Mat B,PetscBool *flag) 19976e4ee0c6SHong Zhang { 19986e4ee0c6SHong Zhang Mat_MPIDense *matB = (Mat_MPIDense*)B->data,*matA = (Mat_MPIDense*)A->data; 19996e4ee0c6SHong Zhang Mat a,b; 2000ace3abfcSBarry Smith PetscBool flg; 20016e4ee0c6SHong Zhang PetscErrorCode ierr; 200290ace30eSBarry Smith 20036e4ee0c6SHong Zhang PetscFunctionBegin; 20046e4ee0c6SHong Zhang a = matA->A; 20056e4ee0c6SHong Zhang b = matB->A; 20066e4ee0c6SHong Zhang ierr = MatEqual(a,b,&flg);CHKERRQ(ierr); 2007b2566f29SBarry Smith ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 20086e4ee0c6SHong Zhang PetscFunctionReturn(0); 20096e4ee0c6SHong Zhang } 201090ace30eSBarry Smith 2011baa3c1c6SHong Zhang PetscErrorCode MatDestroy_MatTransMatMult_MPIDense_MPIDense(Mat A) 2012baa3c1c6SHong Zhang { 2013baa3c1c6SHong Zhang PetscErrorCode ierr; 2014baa3c1c6SHong Zhang Mat_MPIDense *a = (Mat_MPIDense*)A->data; 2015baa3c1c6SHong Zhang Mat_TransMatMultDense *atb = a->atbdense; 2016baa3c1c6SHong Zhang 2017baa3c1c6SHong Zhang PetscFunctionBegin; 2018*637a0070SStefano Zampini ierr = PetscFree2(atb->sendbuf,atb->recvcounts);CHKERRQ(ierr); 2019*637a0070SStefano Zampini ierr = MatDestroy(&atb->atb);CHKERRQ(ierr); 2020*637a0070SStefano Zampini ierr = (*atb->destroy)(A);CHKERRQ(ierr); 2021baa3c1c6SHong Zhang ierr = PetscFree(atb);CHKERRQ(ierr); 2022baa3c1c6SHong Zhang PetscFunctionReturn(0); 2023baa3c1c6SHong Zhang } 2024baa3c1c6SHong Zhang 2025cc48ffa7SToby Isaac PetscErrorCode MatDestroy_MatMatTransMult_MPIDense_MPIDense(Mat A) 2026cc48ffa7SToby Isaac { 2027cc48ffa7SToby Isaac PetscErrorCode ierr; 2028cc48ffa7SToby Isaac Mat_MPIDense *a = (Mat_MPIDense*)A->data; 2029cc48ffa7SToby Isaac Mat_MatTransMultDense *abt = a->abtdense; 2030cc48ffa7SToby Isaac 2031cc48ffa7SToby Isaac PetscFunctionBegin; 2032cc48ffa7SToby Isaac ierr = PetscFree2(abt->buf[0],abt->buf[1]);CHKERRQ(ierr); 2033faa55883SToby Isaac ierr = PetscFree2(abt->recvcounts,abt->recvdispls);CHKERRQ(ierr); 2034cc48ffa7SToby Isaac ierr = (abt->destroy)(A);CHKERRQ(ierr); 2035cc48ffa7SToby Isaac ierr = PetscFree(abt);CHKERRQ(ierr); 2036cc48ffa7SToby Isaac PetscFunctionReturn(0); 2037cc48ffa7SToby Isaac } 2038cc48ffa7SToby Isaac 2039cb20be35SHong Zhang PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 2040cb20be35SHong Zhang { 2041baa3c1c6SHong Zhang Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 2042baa3c1c6SHong Zhang Mat_TransMatMultDense *atb = c->atbdense; 2043cb20be35SHong Zhang PetscErrorCode ierr; 2044cb20be35SHong Zhang MPI_Comm comm; 2045*637a0070SStefano Zampini PetscMPIInt size,*recvcounts=atb->recvcounts; 2046*637a0070SStefano Zampini PetscScalar *carray,*sendbuf=atb->sendbuf; 2047*637a0070SStefano Zampini const PetscScalar *atbarray; 2048d5017740SHong Zhang PetscInt i,cN=C->cmap->N,cM=C->rmap->N,proc,k,j; 2049e68c0b26SHong Zhang const PetscInt *ranges; 2050cb20be35SHong Zhang 2051cb20be35SHong Zhang PetscFunctionBegin; 2052cb20be35SHong Zhang ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 2053cb20be35SHong Zhang ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2054e68c0b26SHong Zhang 2055c5ef1628SHong Zhang /* compute atbarray = aseq^T * bseq */ 2056*637a0070SStefano Zampini ierr = MatTransposeMatMult(a->A,b->A,atb->atb ? MAT_REUSE_MATRIX : MAT_INITIAL_MATRIX,PETSC_DEFAULT,&atb->atb);CHKERRQ(ierr); 2057cb20be35SHong Zhang 2058cb20be35SHong Zhang ierr = MatGetOwnershipRanges(C,&ranges);CHKERRQ(ierr); 2059c5ef1628SHong Zhang for (i=0; i<size; i++) recvcounts[i] = (ranges[i+1] - ranges[i])*cN; 2060cb20be35SHong Zhang 2061660d5466SHong Zhang /* arrange atbarray into sendbuf */ 2062*637a0070SStefano Zampini ierr = MatDenseGetArrayRead(atb->atb,&atbarray);CHKERRQ(ierr); 2063*637a0070SStefano Zampini for (proc=0, k=0; proc<size; proc++) { 2064baa3c1c6SHong Zhang for (j=0; j<cN; j++) { 2065c5ef1628SHong Zhang for (i=ranges[proc]; i<ranges[proc+1]; i++) sendbuf[k++] = atbarray[i+j*cM]; 2066cb20be35SHong Zhang } 2067cb20be35SHong Zhang } 2068*637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(atb->atb,&atbarray);CHKERRQ(ierr); 2069*637a0070SStefano Zampini 2070c5ef1628SHong Zhang /* sum all atbarray to local values of C */ 2071660d5466SHong Zhang ierr = MatDenseGetArray(c->A,&carray);CHKERRQ(ierr); 20723462b7efSHong Zhang ierr = MPI_Reduce_scatter(sendbuf,carray,recvcounts,MPIU_SCALAR,MPIU_SUM,comm);CHKERRQ(ierr); 2073660d5466SHong Zhang ierr = MatDenseRestoreArray(c->A,&carray);CHKERRQ(ierr); 2074cb20be35SHong Zhang PetscFunctionReturn(0); 2075cb20be35SHong Zhang } 2076cb20be35SHong Zhang 20774222ddf1SHong Zhang PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat C) 2078cb20be35SHong Zhang { 2079cb20be35SHong Zhang PetscErrorCode ierr; 2080cb20be35SHong Zhang MPI_Comm comm; 2081baa3c1c6SHong Zhang PetscMPIInt size; 2082660d5466SHong Zhang PetscInt cm=A->cmap->n,cM,cN=B->cmap->N; 2083baa3c1c6SHong Zhang Mat_MPIDense *c; 2084baa3c1c6SHong Zhang Mat_TransMatMultDense *atb; 2085cb20be35SHong Zhang 2086cb20be35SHong Zhang PetscFunctionBegin; 2087baa3c1c6SHong Zhang ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 2088cb20be35SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) { 2089cb20be35SHong Zhang SETERRQ4(comm,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != B (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 2090cb20be35SHong Zhang } 2091cb20be35SHong Zhang 20924222ddf1SHong Zhang /* create matrix product C */ 20934222ddf1SHong Zhang ierr = MatSetSizes(C,cm,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 20944222ddf1SHong Zhang ierr = MatSetType(C,MATMPIDENSE);CHKERRQ(ierr); 209518992e5dSStefano Zampini ierr = MatSetUp(C);CHKERRQ(ierr); 20964222ddf1SHong Zhang ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 20974222ddf1SHong Zhang ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2098baa3c1c6SHong Zhang 20994222ddf1SHong Zhang /* create data structure for reuse C */ 2100baa3c1c6SHong Zhang ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2101baa3c1c6SHong Zhang ierr = PetscNew(&atb);CHKERRQ(ierr); 21024222ddf1SHong Zhang cM = C->rmap->N; 2103*637a0070SStefano Zampini ierr = PetscMalloc2(cM*cN,&atb->sendbuf,size,&atb->recvcounts);CHKERRQ(ierr); 2104baa3c1c6SHong Zhang 21054222ddf1SHong Zhang c = (Mat_MPIDense*)C->data; 2106baa3c1c6SHong Zhang c->atbdense = atb; 21074222ddf1SHong Zhang atb->destroy = C->ops->destroy; 21084222ddf1SHong Zhang C->ops->destroy = MatDestroy_MatTransMatMult_MPIDense_MPIDense; 2109cb20be35SHong Zhang PetscFunctionReturn(0); 2110cb20be35SHong Zhang } 2111cb20be35SHong Zhang 21124222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat A, Mat B, PetscReal fill, Mat C) 2113cb20be35SHong Zhang { 2114cb20be35SHong Zhang PetscErrorCode ierr; 2115cc48ffa7SToby Isaac MPI_Comm comm; 2116cc48ffa7SToby Isaac PetscMPIInt i, size; 2117cc48ffa7SToby Isaac PetscInt maxRows, bufsiz; 2118cc48ffa7SToby Isaac Mat_MPIDense *c; 2119cc48ffa7SToby Isaac PetscMPIInt tag; 21204222ddf1SHong Zhang PetscInt alg; 2121cc48ffa7SToby Isaac Mat_MatTransMultDense *abt; 21224222ddf1SHong Zhang Mat_Product *product = C->product; 21234222ddf1SHong Zhang PetscBool flg; 2124cc48ffa7SToby Isaac 2125cc48ffa7SToby Isaac PetscFunctionBegin; 21264222ddf1SHong Zhang /* check local size of A and B */ 2127*637a0070SStefano Zampini if (A->cmap->n != B->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local column dimensions are incompatible, A (%D) != B (%D)",A->cmap->n,B->cmap->n); 2128cc48ffa7SToby Isaac 21294222ddf1SHong Zhang ierr = PetscStrcmp(product->alg,"allgatherv",&flg);CHKERRQ(ierr); 2130*637a0070SStefano Zampini alg = flg ? 0 : 1; 2131cc48ffa7SToby Isaac 21324222ddf1SHong Zhang /* setup matrix product C */ 21334222ddf1SHong Zhang ierr = MatSetSizes(C,A->rmap->n,B->rmap->n,A->rmap->N,B->rmap->N);CHKERRQ(ierr); 21344222ddf1SHong Zhang ierr = MatSetType(C,MATMPIDENSE);CHKERRQ(ierr); 213518992e5dSStefano Zampini ierr = MatSetUp(C);CHKERRQ(ierr); 21364222ddf1SHong Zhang ierr = PetscObjectGetNewTag((PetscObject)C, &tag);CHKERRQ(ierr); 21374222ddf1SHong Zhang ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 21384222ddf1SHong Zhang ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 21394222ddf1SHong Zhang 21404222ddf1SHong Zhang /* create data structure for reuse C */ 21414222ddf1SHong Zhang ierr = PetscObjectGetComm((PetscObject)C,&comm);CHKERRQ(ierr); 2142cc48ffa7SToby Isaac ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2143cc48ffa7SToby Isaac ierr = PetscNew(&abt);CHKERRQ(ierr); 2144cc48ffa7SToby Isaac abt->tag = tag; 2145faa55883SToby Isaac abt->alg = alg; 2146faa55883SToby Isaac switch (alg) { 21474222ddf1SHong Zhang case 1: /* alg: "cyclic" */ 2148cc48ffa7SToby Isaac for (maxRows = 0, i = 0; i < size; i++) maxRows = PetscMax(maxRows, (B->rmap->range[i + 1] - B->rmap->range[i])); 2149cc48ffa7SToby Isaac bufsiz = A->cmap->N * maxRows; 2150cc48ffa7SToby Isaac ierr = PetscMalloc2(bufsiz,&(abt->buf[0]),bufsiz,&(abt->buf[1]));CHKERRQ(ierr); 2151faa55883SToby Isaac break; 21524222ddf1SHong Zhang default: /* alg: "allgatherv" */ 2153faa55883SToby Isaac ierr = PetscMalloc2(B->rmap->n * B->cmap->N, &(abt->buf[0]), B->rmap->N * B->cmap->N, &(abt->buf[1]));CHKERRQ(ierr); 2154faa55883SToby Isaac ierr = PetscMalloc2(size,&(abt->recvcounts),size+1,&(abt->recvdispls));CHKERRQ(ierr); 2155faa55883SToby Isaac for (i = 0; i <= size; i++) abt->recvdispls[i] = B->rmap->range[i] * A->cmap->N; 2156faa55883SToby Isaac for (i = 0; i < size; i++) abt->recvcounts[i] = abt->recvdispls[i + 1] - abt->recvdispls[i]; 2157faa55883SToby Isaac break; 2158faa55883SToby Isaac } 2159cc48ffa7SToby Isaac 21604222ddf1SHong Zhang c = (Mat_MPIDense*)C->data; 2161cc48ffa7SToby Isaac c->abtdense = abt; 21624222ddf1SHong Zhang abt->destroy = C->ops->destroy; 21634222ddf1SHong Zhang C->ops->destroy = MatDestroy_MatMatTransMult_MPIDense_MPIDense; 21644222ddf1SHong Zhang C->ops->mattransposemultnumeric = MatMatTransposeMultNumeric_MPIDense_MPIDense; 2165cc48ffa7SToby Isaac PetscFunctionReturn(0); 2166cc48ffa7SToby Isaac } 2167cc48ffa7SToby Isaac 2168faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(Mat A, Mat B, Mat C) 2169cc48ffa7SToby Isaac { 2170cc48ffa7SToby Isaac Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 2171cc48ffa7SToby Isaac Mat_MatTransMultDense *abt = c->abtdense; 2172cc48ffa7SToby Isaac PetscErrorCode ierr; 2173cc48ffa7SToby Isaac MPI_Comm comm; 2174cc48ffa7SToby Isaac PetscMPIInt rank,size, sendsiz, recvsiz, sendto, recvfrom, recvisfrom; 2175*637a0070SStefano Zampini PetscScalar *sendbuf, *recvbuf=0, *cv; 2176cc48ffa7SToby Isaac PetscInt i,cK=A->cmap->N,k,j,bn; 2177cc48ffa7SToby Isaac PetscScalar _DOne=1.0,_DZero=0.0; 2178*637a0070SStefano Zampini const PetscScalar *av,*bv; 2179*637a0070SStefano Zampini PetscBLASInt cm, cn, ck, alda, blda, clda; 2180cc48ffa7SToby Isaac MPI_Request reqs[2]; 2181cc48ffa7SToby Isaac const PetscInt *ranges; 2182cc48ffa7SToby Isaac 2183cc48ffa7SToby Isaac PetscFunctionBegin; 2184cc48ffa7SToby Isaac ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 2185cc48ffa7SToby Isaac ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 2186cc48ffa7SToby Isaac ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2187*637a0070SStefano Zampini ierr = MatDenseGetArrayRead(a->A,&av);CHKERRQ(ierr); 2188*637a0070SStefano Zampini ierr = MatDenseGetArrayRead(b->A,&bv);CHKERRQ(ierr); 2189*637a0070SStefano Zampini ierr = MatDenseGetArray(c->A,&cv);CHKERRQ(ierr); 2190*637a0070SStefano Zampini ierr = MatDenseGetLDA(a->A,&i);CHKERRQ(ierr); 2191*637a0070SStefano Zampini ierr = PetscBLASIntCast(i,&alda);CHKERRQ(ierr); 2192*637a0070SStefano Zampini ierr = MatDenseGetLDA(b->A,&i);CHKERRQ(ierr); 2193*637a0070SStefano Zampini ierr = PetscBLASIntCast(i,&blda);CHKERRQ(ierr); 2194*637a0070SStefano Zampini ierr = MatDenseGetLDA(c->A,&i);CHKERRQ(ierr); 2195*637a0070SStefano Zampini ierr = PetscBLASIntCast(i,&clda);CHKERRQ(ierr); 2196cc48ffa7SToby Isaac ierr = MatGetOwnershipRanges(B,&ranges);CHKERRQ(ierr); 2197cc48ffa7SToby Isaac bn = B->rmap->n; 2198*637a0070SStefano Zampini if (blda == bn) { 2199*637a0070SStefano Zampini sendbuf = (PetscScalar*)bv; 2200cc48ffa7SToby Isaac } else { 2201cc48ffa7SToby Isaac sendbuf = abt->buf[0]; 2202cc48ffa7SToby Isaac for (k = 0, i = 0; i < cK; i++) { 2203cc48ffa7SToby Isaac for (j = 0; j < bn; j++, k++) { 2204*637a0070SStefano Zampini sendbuf[k] = bv[i * blda + j]; 2205cc48ffa7SToby Isaac } 2206cc48ffa7SToby Isaac } 2207cc48ffa7SToby Isaac } 2208cc48ffa7SToby Isaac if (size > 1) { 2209cc48ffa7SToby Isaac sendto = (rank + size - 1) % size; 2210cc48ffa7SToby Isaac recvfrom = (rank + size + 1) % size; 2211cc48ffa7SToby Isaac } else { 2212cc48ffa7SToby Isaac sendto = recvfrom = 0; 2213cc48ffa7SToby Isaac } 2214cc48ffa7SToby Isaac ierr = PetscBLASIntCast(cK,&ck);CHKERRQ(ierr); 2215cc48ffa7SToby Isaac ierr = PetscBLASIntCast(c->A->rmap->n,&cm);CHKERRQ(ierr); 2216cc48ffa7SToby Isaac recvisfrom = rank; 2217cc48ffa7SToby Isaac for (i = 0; i < size; i++) { 2218cc48ffa7SToby Isaac /* we have finished receiving in sending, bufs can be read/modified */ 2219cc48ffa7SToby Isaac PetscInt nextrecvisfrom = (recvisfrom + 1) % size; /* which process the next recvbuf will originate on */ 2220cc48ffa7SToby Isaac PetscInt nextbn = ranges[nextrecvisfrom + 1] - ranges[nextrecvisfrom]; 2221cc48ffa7SToby Isaac 2222cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2223cc48ffa7SToby Isaac /* start the cyclic sends from sendbuf, to recvbuf (which will switch to sendbuf) */ 2224cc48ffa7SToby Isaac sendsiz = cK * bn; 2225cc48ffa7SToby Isaac recvsiz = cK * nextbn; 2226cc48ffa7SToby Isaac recvbuf = (i & 1) ? abt->buf[0] : abt->buf[1]; 2227cc48ffa7SToby Isaac ierr = MPI_Isend(sendbuf, sendsiz, MPIU_SCALAR, sendto, abt->tag, comm, &reqs[0]);CHKERRQ(ierr); 2228cc48ffa7SToby Isaac ierr = MPI_Irecv(recvbuf, recvsiz, MPIU_SCALAR, recvfrom, abt->tag, comm, &reqs[1]);CHKERRQ(ierr); 2229cc48ffa7SToby Isaac } 2230cc48ffa7SToby Isaac 2231cc48ffa7SToby Isaac /* local aseq * sendbuf^T */ 2232cc48ffa7SToby Isaac ierr = PetscBLASIntCast(ranges[recvisfrom + 1] - ranges[recvisfrom], &cn);CHKERRQ(ierr); 2233*637a0070SStefano Zampini PetscStackCallBLAS("BLASgemm",BLASgemm_("N","T",&cm,&cn,&ck,&_DOne,av,&alda,sendbuf,&cn,&_DZero,cv + clda * ranges[recvisfrom],&clda)); 2234cc48ffa7SToby Isaac 2235cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2236cc48ffa7SToby Isaac /* wait for the sends and receives to complete, swap sendbuf and recvbuf */ 2237cc48ffa7SToby Isaac ierr = MPI_Waitall(2, reqs, MPI_STATUSES_IGNORE);CHKERRQ(ierr); 2238cc48ffa7SToby Isaac } 2239cc48ffa7SToby Isaac bn = nextbn; 2240cc48ffa7SToby Isaac recvisfrom = nextrecvisfrom; 2241cc48ffa7SToby Isaac sendbuf = recvbuf; 2242cc48ffa7SToby Isaac } 2243*637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(a->A,&av);CHKERRQ(ierr); 2244*637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(b->A,&bv);CHKERRQ(ierr); 2245*637a0070SStefano Zampini ierr = MatDenseRestoreArray(c->A,&cv);CHKERRQ(ierr); 2246cc48ffa7SToby Isaac PetscFunctionReturn(0); 2247cc48ffa7SToby Isaac } 2248cc48ffa7SToby Isaac 2249faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(Mat A, Mat B, Mat C) 2250faa55883SToby Isaac { 2251faa55883SToby Isaac Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 2252faa55883SToby Isaac Mat_MatTransMultDense *abt = c->abtdense; 2253faa55883SToby Isaac PetscErrorCode ierr; 2254faa55883SToby Isaac MPI_Comm comm; 2255*637a0070SStefano Zampini PetscMPIInt size; 2256*637a0070SStefano Zampini PetscScalar *cv, *sendbuf, *recvbuf; 2257*637a0070SStefano Zampini const PetscScalar *av,*bv; 2258*637a0070SStefano Zampini PetscInt blda,i,cK=A->cmap->N,k,j,bn; 2259faa55883SToby Isaac PetscScalar _DOne=1.0,_DZero=0.0; 2260*637a0070SStefano Zampini PetscBLASInt cm, cn, ck, alda, clda; 2261faa55883SToby Isaac 2262faa55883SToby Isaac PetscFunctionBegin; 2263faa55883SToby Isaac ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 2264faa55883SToby Isaac ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2265*637a0070SStefano Zampini ierr = MatDenseGetArrayRead(a->A,&av);CHKERRQ(ierr); 2266*637a0070SStefano Zampini ierr = MatDenseGetArrayRead(b->A,&bv);CHKERRQ(ierr); 2267*637a0070SStefano Zampini ierr = MatDenseGetArray(c->A,&cv);CHKERRQ(ierr); 2268*637a0070SStefano Zampini ierr = MatDenseGetLDA(a->A,&i);CHKERRQ(ierr); 2269*637a0070SStefano Zampini ierr = PetscBLASIntCast(i,&alda);CHKERRQ(ierr); 2270*637a0070SStefano Zampini ierr = MatDenseGetLDA(b->A,&blda);CHKERRQ(ierr); 2271*637a0070SStefano Zampini ierr = MatDenseGetLDA(c->A,&i);CHKERRQ(ierr); 2272*637a0070SStefano Zampini ierr = PetscBLASIntCast(i,&clda);CHKERRQ(ierr); 2273faa55883SToby Isaac /* copy transpose of B into buf[0] */ 2274faa55883SToby Isaac bn = B->rmap->n; 2275faa55883SToby Isaac sendbuf = abt->buf[0]; 2276faa55883SToby Isaac recvbuf = abt->buf[1]; 2277faa55883SToby Isaac for (k = 0, j = 0; j < bn; j++) { 2278faa55883SToby Isaac for (i = 0; i < cK; i++, k++) { 2279*637a0070SStefano Zampini sendbuf[k] = bv[i * blda + j]; 2280faa55883SToby Isaac } 2281faa55883SToby Isaac } 2282*637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(b->A,&bv);CHKERRQ(ierr); 2283faa55883SToby Isaac ierr = MPI_Allgatherv(sendbuf, bn * cK, MPIU_SCALAR, recvbuf, abt->recvcounts, abt->recvdispls, MPIU_SCALAR, comm);CHKERRQ(ierr); 2284faa55883SToby Isaac ierr = PetscBLASIntCast(cK,&ck);CHKERRQ(ierr); 2285faa55883SToby Isaac ierr = PetscBLASIntCast(c->A->rmap->n,&cm);CHKERRQ(ierr); 2286faa55883SToby Isaac ierr = PetscBLASIntCast(c->A->cmap->n,&cn);CHKERRQ(ierr); 2287*637a0070SStefano Zampini PetscStackCallBLAS("BLASgemm",BLASgemm_("N","N",&cm,&cn,&ck,&_DOne,av,&alda,recvbuf,&ck,&_DZero,cv,&clda)); 2288*637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(a->A,&av);CHKERRQ(ierr); 2289*637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(b->A,&bv);CHKERRQ(ierr); 2290*637a0070SStefano Zampini ierr = MatDenseRestoreArray(c->A,&cv);CHKERRQ(ierr); 2291faa55883SToby Isaac PetscFunctionReturn(0); 2292faa55883SToby Isaac } 2293faa55883SToby Isaac 2294faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat A, Mat B, Mat C) 2295faa55883SToby Isaac { 2296faa55883SToby Isaac Mat_MPIDense *c=(Mat_MPIDense*)C->data; 2297faa55883SToby Isaac Mat_MatTransMultDense *abt = c->abtdense; 2298faa55883SToby Isaac PetscErrorCode ierr; 2299faa55883SToby Isaac 2300faa55883SToby Isaac PetscFunctionBegin; 2301faa55883SToby Isaac switch (abt->alg) { 2302faa55883SToby Isaac case 1: 2303faa55883SToby Isaac ierr = MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(A, B, C);CHKERRQ(ierr); 2304faa55883SToby Isaac break; 2305faa55883SToby Isaac default: 2306faa55883SToby Isaac ierr = MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(A, B, C);CHKERRQ(ierr); 2307faa55883SToby Isaac break; 2308faa55883SToby Isaac } 2309faa55883SToby Isaac PetscFunctionReturn(0); 2310faa55883SToby Isaac } 2311faa55883SToby Isaac 2312320f2790SHong Zhang PetscErrorCode MatDestroy_MatMatMult_MPIDense_MPIDense(Mat A) 2313320f2790SHong Zhang { 2314320f2790SHong Zhang PetscErrorCode ierr; 2315320f2790SHong Zhang Mat_MPIDense *a = (Mat_MPIDense*)A->data; 2316320f2790SHong Zhang Mat_MatMultDense *ab = a->abdense; 2317320f2790SHong Zhang 2318320f2790SHong Zhang PetscFunctionBegin; 2319320f2790SHong Zhang ierr = MatDestroy(&ab->Ce);CHKERRQ(ierr); 2320320f2790SHong Zhang ierr = MatDestroy(&ab->Ae);CHKERRQ(ierr); 2321320f2790SHong Zhang ierr = MatDestroy(&ab->Be);CHKERRQ(ierr); 2322320f2790SHong Zhang 2323320f2790SHong Zhang ierr = (ab->destroy)(A);CHKERRQ(ierr); 2324320f2790SHong Zhang ierr = PetscFree(ab);CHKERRQ(ierr); 2325320f2790SHong Zhang PetscFunctionReturn(0); 2326320f2790SHong Zhang } 2327320f2790SHong Zhang 23285242a7b1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 2329320f2790SHong Zhang PetscErrorCode MatMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 2330320f2790SHong Zhang { 2331320f2790SHong Zhang PetscErrorCode ierr; 2332320f2790SHong Zhang Mat_MPIDense *c=(Mat_MPIDense*)C->data; 2333320f2790SHong Zhang Mat_MatMultDense *ab=c->abdense; 2334320f2790SHong Zhang 2335320f2790SHong Zhang PetscFunctionBegin; 2336de0a22f0SHong Zhang ierr = MatConvert_MPIDense_Elemental(A,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Ae);CHKERRQ(ierr); 2337de0a22f0SHong Zhang ierr = MatConvert_MPIDense_Elemental(B,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Be);CHKERRQ(ierr); 23384222ddf1SHong Zhang ierr = MatMatMultNumeric_Elemental(ab->Ae,ab->Be,ab->Ce);CHKERRQ(ierr); 2339de0a22f0SHong Zhang ierr = MatConvert(ab->Ce,MATMPIDENSE,MAT_REUSE_MATRIX,&C);CHKERRQ(ierr); 2340320f2790SHong Zhang PetscFunctionReturn(0); 2341320f2790SHong Zhang } 2342320f2790SHong Zhang 23434222ddf1SHong Zhang PetscErrorCode MatMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat C) 2344320f2790SHong Zhang { 2345320f2790SHong Zhang PetscErrorCode ierr; 2346320f2790SHong Zhang Mat Ae,Be,Ce; 2347320f2790SHong Zhang Mat_MPIDense *c; 2348320f2790SHong Zhang Mat_MatMultDense *ab; 2349320f2790SHong Zhang 2350320f2790SHong Zhang PetscFunctionBegin; 23514222ddf1SHong Zhang /* check local size of A and B */ 2352320f2790SHong Zhang if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend) { 2353378336b6SHong Zhang SETERRQ4(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != B (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 2354320f2790SHong Zhang } 2355320f2790SHong Zhang 23564222ddf1SHong Zhang /* create elemental matrices Ae and Be */ 23574222ddf1SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)A), &Ae);CHKERRQ(ierr); 23584222ddf1SHong Zhang ierr = MatSetSizes(Ae,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 23594222ddf1SHong Zhang ierr = MatSetType(Ae,MATELEMENTAL);CHKERRQ(ierr); 23604222ddf1SHong Zhang ierr = MatSetUp(Ae);CHKERRQ(ierr); 23614222ddf1SHong Zhang ierr = MatSetOption(Ae,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 2362320f2790SHong Zhang 23634222ddf1SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)B), &Be);CHKERRQ(ierr); 23644222ddf1SHong Zhang ierr = MatSetSizes(Be,PETSC_DECIDE,PETSC_DECIDE,B->rmap->N,B->cmap->N);CHKERRQ(ierr); 23654222ddf1SHong Zhang ierr = MatSetType(Be,MATELEMENTAL);CHKERRQ(ierr); 23664222ddf1SHong Zhang ierr = MatSetUp(Be);CHKERRQ(ierr); 23674222ddf1SHong Zhang ierr = MatSetOption(Be,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 2368320f2790SHong Zhang 23694222ddf1SHong Zhang /* compute symbolic Ce = Ae*Be */ 23704222ddf1SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)C),&Ce);CHKERRQ(ierr); 23714222ddf1SHong Zhang ierr = MatMatMultSymbolic_Elemental(Ae,Be,fill,Ce);CHKERRQ(ierr); 23724222ddf1SHong Zhang 23734222ddf1SHong Zhang /* setup C */ 23744222ddf1SHong Zhang ierr = MatSetSizes(C,A->rmap->n,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 23754222ddf1SHong Zhang ierr = MatSetType(C,MATDENSE);CHKERRQ(ierr); 23764222ddf1SHong Zhang ierr = MatSetUp(C);CHKERRQ(ierr); 2377320f2790SHong Zhang 2378320f2790SHong Zhang /* create data structure for reuse Cdense */ 2379320f2790SHong Zhang ierr = PetscNew(&ab);CHKERRQ(ierr); 23804222ddf1SHong Zhang c = (Mat_MPIDense*)C->data; 2381320f2790SHong Zhang c->abdense = ab; 2382320f2790SHong Zhang 2383320f2790SHong Zhang ab->Ae = Ae; 2384320f2790SHong Zhang ab->Be = Be; 2385320f2790SHong Zhang ab->Ce = Ce; 23864222ddf1SHong Zhang ab->destroy = C->ops->destroy; 23874222ddf1SHong Zhang C->ops->destroy = MatDestroy_MatMatMult_MPIDense_MPIDense; 23884222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIDense; 23894222ddf1SHong Zhang C->ops->productnumeric = MatProductNumeric_AB; 2390320f2790SHong Zhang PetscFunctionReturn(0); 2391320f2790SHong Zhang } 23924222ddf1SHong Zhang #endif 23934222ddf1SHong Zhang /* ----------------------------------------------- */ 23944222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 23954222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_AB(Mat C) 2396320f2790SHong Zhang { 2397320f2790SHong Zhang PetscFunctionBegin; 23984222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIDense; 23994222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 24004222ddf1SHong Zhang C->ops->productnumeric = MatProductNumeric_AB; 2401320f2790SHong Zhang PetscFunctionReturn(0); 2402320f2790SHong Zhang } 24035242a7b1SHong Zhang #endif 240486aefd0dSHong Zhang 24054222ddf1SHong Zhang static PetscErrorCode MatProductSymbolic_AtB_MPIDense(Mat C) 24064222ddf1SHong Zhang { 24074222ddf1SHong Zhang PetscErrorCode ierr; 24084222ddf1SHong Zhang Mat_Product *product = C->product; 24094222ddf1SHong Zhang 24104222ddf1SHong Zhang PetscFunctionBegin; 24114222ddf1SHong Zhang ierr = MatTransposeMatMultSymbolic_MPIDense_MPIDense(product->A,product->B,product->fill,C);CHKERRQ(ierr); 24124222ddf1SHong Zhang C->ops->productnumeric = MatProductNumeric_AtB; 24134222ddf1SHong Zhang C->ops->transposematmultnumeric = MatTransposeMatMultNumeric_MPIDense_MPIDense; 24144222ddf1SHong Zhang PetscFunctionReturn(0); 24154222ddf1SHong Zhang } 24164222ddf1SHong Zhang 24174222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_AtB(Mat C) 24184222ddf1SHong Zhang { 24194222ddf1SHong Zhang Mat_Product *product = C->product; 24204222ddf1SHong Zhang Mat A = product->A,B=product->B; 24214222ddf1SHong Zhang 24224222ddf1SHong Zhang PetscFunctionBegin; 24234222ddf1SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) 24244222ddf1SHong Zhang SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, (%D, %D) != (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 24254222ddf1SHong Zhang 24264222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AtB_MPIDense; 24274222ddf1SHong Zhang PetscFunctionReturn(0); 24284222ddf1SHong Zhang } 24294222ddf1SHong Zhang 24304222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_ABt(Mat C) 24314222ddf1SHong Zhang { 24324222ddf1SHong Zhang PetscErrorCode ierr; 24334222ddf1SHong Zhang Mat_Product *product = C->product; 24344222ddf1SHong Zhang const char *algTypes[2] = {"allgatherv","cyclic"}; 24354222ddf1SHong Zhang PetscInt alg,nalg = 2; 24364222ddf1SHong Zhang PetscBool flg = PETSC_FALSE; 24374222ddf1SHong Zhang 24384222ddf1SHong Zhang PetscFunctionBegin; 24394222ddf1SHong Zhang /* Set default algorithm */ 24404222ddf1SHong Zhang alg = 0; /* default is allgatherv */ 24414222ddf1SHong Zhang ierr = PetscStrcmp(product->alg,"default",&flg);CHKERRQ(ierr); 24424222ddf1SHong Zhang if (flg) { 24434222ddf1SHong Zhang ierr = MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]);CHKERRQ(ierr); 24444222ddf1SHong Zhang } 24454222ddf1SHong Zhang 24464222ddf1SHong Zhang /* Get runtime option */ 24474222ddf1SHong Zhang if (product->api_user) { 24484222ddf1SHong Zhang ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatMatTransposeMult","Mat");CHKERRQ(ierr); 24494222ddf1SHong Zhang ierr = PetscOptionsEList("-matmattransmult_mpidense_mpidense_via","Algorithmic approach","MatMatTransposeMult",algTypes,nalg,algTypes[alg],&alg,&flg);CHKERRQ(ierr); 24504222ddf1SHong Zhang ierr = PetscOptionsEnd();CHKERRQ(ierr); 24514222ddf1SHong Zhang } else { 24524222ddf1SHong Zhang ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatProduct_ABt","Mat");CHKERRQ(ierr); 24534222ddf1SHong Zhang ierr = PetscOptionsEList("-matproduct_abt_mpidense_mpidense_via","Algorithmic approach","MatProduct_ABt",algTypes,nalg,algTypes[alg],&alg,&flg);CHKERRQ(ierr); 24544222ddf1SHong Zhang ierr = PetscOptionsEnd();CHKERRQ(ierr); 24554222ddf1SHong Zhang } 24564222ddf1SHong Zhang if (flg) { 24574222ddf1SHong Zhang ierr = MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]);CHKERRQ(ierr); 24584222ddf1SHong Zhang } 24594222ddf1SHong Zhang 24604222ddf1SHong Zhang C->ops->mattransposemultsymbolic = MatMatTransposeMultSymbolic_MPIDense_MPIDense; 24614222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_ABt; 24624222ddf1SHong Zhang C->ops->productnumeric = MatProductNumeric_ABt; 24634222ddf1SHong Zhang PetscFunctionReturn(0); 24644222ddf1SHong Zhang } 24654222ddf1SHong Zhang 24664222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense(Mat C) 24674222ddf1SHong Zhang { 24684222ddf1SHong Zhang PetscErrorCode ierr; 24694222ddf1SHong Zhang Mat_Product *product = C->product; 24704222ddf1SHong Zhang 24714222ddf1SHong Zhang PetscFunctionBegin; 24724222ddf1SHong Zhang switch (product->type) { 24734222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 24744222ddf1SHong Zhang case MATPRODUCT_AB: 24754222ddf1SHong Zhang ierr = MatProductSetFromOptions_MPIDense_AB(C);CHKERRQ(ierr); 24764222ddf1SHong Zhang break; 24774222ddf1SHong Zhang #endif 24784222ddf1SHong Zhang case MATPRODUCT_AtB: 24794222ddf1SHong Zhang ierr = MatProductSetFromOptions_MPIDense_AtB(C);CHKERRQ(ierr); 24804222ddf1SHong Zhang break; 24814222ddf1SHong Zhang case MATPRODUCT_ABt: 24824222ddf1SHong Zhang ierr = MatProductSetFromOptions_MPIDense_ABt(C);CHKERRQ(ierr); 24834222ddf1SHong Zhang break; 2484544a5e07SHong Zhang default: SETERRQ1(PetscObjectComm((PetscObject)C),PETSC_ERR_SUP,"MatProduct type %s is not supported for MPIDense and MPIDense matrices",MatProductTypes[product->type]); 24854222ddf1SHong Zhang } 24864222ddf1SHong Zhang PetscFunctionReturn(0); 24874222ddf1SHong Zhang } 2488