xref: /petsc/src/mat/impls/dense/mpi/mpidense.c (revision 637a00707ce14f5a4938f90425bc854823738873)
1be1d678aSKris Buschelman 
2ed3cc1f0SBarry Smith /*
3ed3cc1f0SBarry Smith    Basic functions for basic parallel dense matrices.
4ed3cc1f0SBarry Smith */
5ed3cc1f0SBarry Smith 
6c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h>    /*I   "petscmat.h"  I*/
78949adfdSHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h>
8baa3c1c6SHong Zhang #include <petscblaslapack.h>
98965ea79SLois Curfman McInnes 
10ab92ecdeSBarry Smith /*@
11ab92ecdeSBarry Smith 
12ab92ecdeSBarry Smith       MatDenseGetLocalMatrix - For a MATMPIDENSE or MATSEQDENSE matrix returns the sequential
13ab92ecdeSBarry Smith               matrix that represents the operator. For sequential matrices it returns itself.
14ab92ecdeSBarry Smith 
15ab92ecdeSBarry Smith     Input Parameter:
16ab92ecdeSBarry Smith .      A - the Seq or MPI dense matrix
17ab92ecdeSBarry Smith 
18ab92ecdeSBarry Smith     Output Parameter:
19ab92ecdeSBarry Smith .      B - the inner matrix
20ab92ecdeSBarry Smith 
218e6c10adSSatish Balay     Level: intermediate
228e6c10adSSatish Balay 
23ab92ecdeSBarry Smith @*/
24ab92ecdeSBarry Smith PetscErrorCode MatDenseGetLocalMatrix(Mat A,Mat *B)
25ab92ecdeSBarry Smith {
26ab92ecdeSBarry Smith   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
27ab92ecdeSBarry Smith   PetscErrorCode ierr;
28ace3abfcSBarry Smith   PetscBool      flg;
29ab92ecdeSBarry Smith 
30ab92ecdeSBarry Smith   PetscFunctionBegin;
31251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIDENSE,&flg);CHKERRQ(ierr);
322205254eSKarl Rupp   if (flg) *B = mat->A;
332205254eSKarl Rupp   else *B = A;
34ab92ecdeSBarry Smith   PetscFunctionReturn(0);
35ab92ecdeSBarry Smith }
36ab92ecdeSBarry Smith 
37ba8c8a56SBarry Smith PetscErrorCode MatGetRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
38ba8c8a56SBarry Smith {
39ba8c8a56SBarry Smith   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
40ba8c8a56SBarry Smith   PetscErrorCode ierr;
41d0f46423SBarry Smith   PetscInt       lrow,rstart = A->rmap->rstart,rend = A->rmap->rend;
42ba8c8a56SBarry Smith 
43ba8c8a56SBarry Smith   PetscFunctionBegin;
44e7e72b3dSBarry Smith   if (row < rstart || row >= rend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows");
45ba8c8a56SBarry Smith   lrow = row - rstart;
46ba8c8a56SBarry Smith   ierr = MatGetRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v);CHKERRQ(ierr);
47ba8c8a56SBarry Smith   PetscFunctionReturn(0);
48ba8c8a56SBarry Smith }
49ba8c8a56SBarry Smith 
50*637a0070SStefano Zampini PetscErrorCode MatRestoreRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
51ba8c8a56SBarry Smith {
52*637a0070SStefano Zampini   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
53ba8c8a56SBarry Smith   PetscErrorCode ierr;
54*637a0070SStefano Zampini   PetscInt       lrow,rstart = A->rmap->rstart,rend = A->rmap->rend;
55ba8c8a56SBarry Smith 
56ba8c8a56SBarry Smith   PetscFunctionBegin;
57*637a0070SStefano Zampini   if (row < rstart || row >= rend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows");
58*637a0070SStefano Zampini   lrow = row - rstart;
59*637a0070SStefano Zampini   ierr = MatRestoreRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v);CHKERRQ(ierr);
60ba8c8a56SBarry Smith   PetscFunctionReturn(0);
61ba8c8a56SBarry Smith }
62ba8c8a56SBarry Smith 
6311bd1e4dSLisandro Dalcin PetscErrorCode  MatGetDiagonalBlock_MPIDense(Mat A,Mat *a)
640de54da6SSatish Balay {
650de54da6SSatish Balay   Mat_MPIDense   *mdn = (Mat_MPIDense*)A->data;
666849ba73SBarry Smith   PetscErrorCode ierr;
67d0f46423SBarry Smith   PetscInt       m = A->rmap->n,rstart = A->rmap->rstart;
6887828ca2SBarry Smith   PetscScalar    *array;
690de54da6SSatish Balay   MPI_Comm       comm;
70*637a0070SStefano Zampini   PetscBool      cong;
7111bd1e4dSLisandro Dalcin   Mat            B;
720de54da6SSatish Balay 
730de54da6SSatish Balay   PetscFunctionBegin;
74*637a0070SStefano Zampini   ierr = MatHasCongruentLayouts(A,&cong);CHKERRQ(ierr);
75*637a0070SStefano Zampini   if (!cong) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only square matrices supported.");
7611bd1e4dSLisandro Dalcin   ierr = PetscObjectQuery((PetscObject)A,"DiagonalBlock",(PetscObject*)&B);CHKERRQ(ierr);
7711bd1e4dSLisandro Dalcin   if (!B) {
780de54da6SSatish Balay     ierr = PetscObjectGetComm((PetscObject)(mdn->A),&comm);CHKERRQ(ierr);
7911bd1e4dSLisandro Dalcin     ierr = MatCreate(comm,&B);CHKERRQ(ierr);
8011bd1e4dSLisandro Dalcin     ierr = MatSetSizes(B,m,m,m,m);CHKERRQ(ierr);
8111bd1e4dSLisandro Dalcin     ierr = MatSetType(B,((PetscObject)mdn->A)->type_name);CHKERRQ(ierr);
828c778c55SBarry Smith     ierr = MatDenseGetArray(mdn->A,&array);CHKERRQ(ierr);
8311bd1e4dSLisandro Dalcin     ierr = MatSeqDenseSetPreallocation(B,array+m*rstart);CHKERRQ(ierr);
848c778c55SBarry Smith     ierr = MatDenseRestoreArray(mdn->A,&array);CHKERRQ(ierr);
8511bd1e4dSLisandro Dalcin     ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
8611bd1e4dSLisandro Dalcin     ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
8711bd1e4dSLisandro Dalcin     ierr = PetscObjectCompose((PetscObject)A,"DiagonalBlock",(PetscObject)B);CHKERRQ(ierr);
8811bd1e4dSLisandro Dalcin     *a   = B;
8911bd1e4dSLisandro Dalcin     ierr = MatDestroy(&B);CHKERRQ(ierr);
902205254eSKarl Rupp   } else *a = B;
910de54da6SSatish Balay   PetscFunctionReturn(0);
920de54da6SSatish Balay }
930de54da6SSatish Balay 
9413f74950SBarry Smith PetscErrorCode MatSetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],const PetscScalar v[],InsertMode addv)
958965ea79SLois Curfman McInnes {
9639b7565bSBarry Smith   Mat_MPIDense   *A = (Mat_MPIDense*)mat->data;
97dfbe8321SBarry Smith   PetscErrorCode ierr;
98d0f46423SBarry Smith   PetscInt       i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row;
99ace3abfcSBarry Smith   PetscBool      roworiented = A->roworiented;
1008965ea79SLois Curfman McInnes 
1013a40ed3dSBarry Smith   PetscFunctionBegin;
1028965ea79SLois Curfman McInnes   for (i=0; i<m; i++) {
1035ef9f2a5SBarry Smith     if (idxm[i] < 0) continue;
104e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large");
1058965ea79SLois Curfman McInnes     if (idxm[i] >= rstart && idxm[i] < rend) {
1068965ea79SLois Curfman McInnes       row = idxm[i] - rstart;
10739b7565bSBarry Smith       if (roworiented) {
10839b7565bSBarry Smith         ierr = MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv);CHKERRQ(ierr);
1093a40ed3dSBarry Smith       } else {
1108965ea79SLois Curfman McInnes         for (j=0; j<n; j++) {
1115ef9f2a5SBarry Smith           if (idxn[j] < 0) continue;
112e32f2f54SBarry Smith           if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large");
11339b7565bSBarry Smith           ierr = MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv);CHKERRQ(ierr);
11439b7565bSBarry Smith         }
1158965ea79SLois Curfman McInnes       }
1162205254eSKarl Rupp     } else if (!A->donotstash) {
1175080c13bSMatthew G Knepley       mat->assembled = PETSC_FALSE;
11839b7565bSBarry Smith       if (roworiented) {
119b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,idxm[i],n,idxn,v+i*n,PETSC_FALSE);CHKERRQ(ierr);
120d36fbae8SSatish Balay       } else {
121b400d20cSBarry Smith         ierr = MatStashValuesCol_Private(&mat->stash,idxm[i],n,idxn,v+i,m,PETSC_FALSE);CHKERRQ(ierr);
12239b7565bSBarry Smith       }
123b49de8d1SLois Curfman McInnes     }
124b49de8d1SLois Curfman McInnes   }
1253a40ed3dSBarry Smith   PetscFunctionReturn(0);
126b49de8d1SLois Curfman McInnes }
127b49de8d1SLois Curfman McInnes 
12813f74950SBarry Smith PetscErrorCode MatGetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
129b49de8d1SLois Curfman McInnes {
130b49de8d1SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
131dfbe8321SBarry Smith   PetscErrorCode ierr;
132d0f46423SBarry Smith   PetscInt       i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row;
133b49de8d1SLois Curfman McInnes 
1343a40ed3dSBarry Smith   PetscFunctionBegin;
135b49de8d1SLois Curfman McInnes   for (i=0; i<m; i++) {
136e32f2f54SBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); */
137e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large");
138b49de8d1SLois Curfman McInnes     if (idxm[i] >= rstart && idxm[i] < rend) {
139b49de8d1SLois Curfman McInnes       row = idxm[i] - rstart;
140b49de8d1SLois Curfman McInnes       for (j=0; j<n; j++) {
141e32f2f54SBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); */
142e7e72b3dSBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large");
143b49de8d1SLois Curfman McInnes         ierr = MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j);CHKERRQ(ierr);
144b49de8d1SLois Curfman McInnes       }
145e7e72b3dSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
1468965ea79SLois Curfman McInnes   }
1473a40ed3dSBarry Smith   PetscFunctionReturn(0);
1488965ea79SLois Curfman McInnes }
1498965ea79SLois Curfman McInnes 
15049a6ff4bSBarry Smith static PetscErrorCode MatDenseGetLDA_MPIDense(Mat A,PetscInt *lda)
15149a6ff4bSBarry Smith {
15249a6ff4bSBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
15349a6ff4bSBarry Smith   PetscErrorCode ierr;
15449a6ff4bSBarry Smith 
15549a6ff4bSBarry Smith   PetscFunctionBegin;
15649a6ff4bSBarry Smith   ierr = MatDenseGetLDA(a->A,lda);CHKERRQ(ierr);
15749a6ff4bSBarry Smith   PetscFunctionReturn(0);
15849a6ff4bSBarry Smith }
15949a6ff4bSBarry Smith 
160*637a0070SStefano Zampini static PetscErrorCode MatDenseGetArray_MPIDense(Mat A,PetscScalar **array)
161ff14e315SSatish Balay {
162ff14e315SSatish Balay   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
163dfbe8321SBarry Smith   PetscErrorCode ierr;
164ff14e315SSatish Balay 
1653a40ed3dSBarry Smith   PetscFunctionBegin;
1668c778c55SBarry Smith   ierr = MatDenseGetArray(a->A,array);CHKERRQ(ierr);
1673a40ed3dSBarry Smith   PetscFunctionReturn(0);
168ff14e315SSatish Balay }
169ff14e315SSatish Balay 
170*637a0070SStefano Zampini static PetscErrorCode MatDenseGetArrayRead_MPIDense(Mat A,const PetscScalar **array)
1718572280aSBarry Smith {
1728572280aSBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
1738572280aSBarry Smith   PetscErrorCode ierr;
1748572280aSBarry Smith 
1758572280aSBarry Smith   PetscFunctionBegin;
1768572280aSBarry Smith   ierr = MatDenseGetArrayRead(a->A,array);CHKERRQ(ierr);
1778572280aSBarry Smith   PetscFunctionReturn(0);
1788572280aSBarry Smith }
1798572280aSBarry Smith 
180*637a0070SStefano Zampini static PetscErrorCode MatDensePlaceArray_MPIDense(Mat A,const PetscScalar *array)
181d3042a70SBarry Smith {
182d3042a70SBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
183d3042a70SBarry Smith   PetscErrorCode ierr;
184d3042a70SBarry Smith 
185d3042a70SBarry Smith   PetscFunctionBegin;
186d3042a70SBarry Smith   ierr = MatDensePlaceArray(a->A,array);CHKERRQ(ierr);
187d3042a70SBarry Smith   PetscFunctionReturn(0);
188d3042a70SBarry Smith }
189d3042a70SBarry Smith 
190d3042a70SBarry Smith static PetscErrorCode MatDenseResetArray_MPIDense(Mat A)
191d3042a70SBarry Smith {
192d3042a70SBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
193d3042a70SBarry Smith   PetscErrorCode ierr;
194d3042a70SBarry Smith 
195d3042a70SBarry Smith   PetscFunctionBegin;
196d3042a70SBarry Smith   ierr = MatDenseResetArray(a->A);CHKERRQ(ierr);
197d3042a70SBarry Smith   PetscFunctionReturn(0);
198d3042a70SBarry Smith }
199d3042a70SBarry Smith 
2007dae84e0SHong Zhang static PetscErrorCode MatCreateSubMatrix_MPIDense(Mat A,IS isrow,IS iscol,MatReuse scall,Mat *B)
201ca3fa75bSLois Curfman McInnes {
202ca3fa75bSLois Curfman McInnes   Mat_MPIDense      *mat  = (Mat_MPIDense*)A->data,*newmatd;
2036849ba73SBarry Smith   PetscErrorCode    ierr;
204*637a0070SStefano Zampini   PetscInt          lda,i,j,rstart,rend,nrows,ncols,Ncols,nlrows,nlcols;
2055d0c19d7SBarry Smith   const PetscInt    *irow,*icol;
206*637a0070SStefano Zampini   const PetscScalar *v;
207*637a0070SStefano Zampini   PetscScalar       *bv;
208ca3fa75bSLois Curfman McInnes   Mat               newmat;
2094aa3045dSJed Brown   IS                iscol_local;
21042a884f0SBarry Smith   MPI_Comm          comm_is,comm_mat;
211ca3fa75bSLois Curfman McInnes 
212ca3fa75bSLois Curfman McInnes   PetscFunctionBegin;
21342a884f0SBarry Smith   ierr = PetscObjectGetComm((PetscObject)A,&comm_mat);CHKERRQ(ierr);
21442a884f0SBarry Smith   ierr = PetscObjectGetComm((PetscObject)iscol,&comm_is);CHKERRQ(ierr);
21542a884f0SBarry Smith   if (comm_mat != comm_is) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NOTSAMECOMM,"IS communicator must match matrix communicator");
21642a884f0SBarry Smith 
2174aa3045dSJed Brown   ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr);
218ca3fa75bSLois Curfman McInnes   ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr);
2194aa3045dSJed Brown   ierr = ISGetIndices(iscol_local,&icol);CHKERRQ(ierr);
220b9b97703SBarry Smith   ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr);
221b9b97703SBarry Smith   ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr);
2224aa3045dSJed Brown   ierr = ISGetSize(iscol,&Ncols);CHKERRQ(ierr); /* global number of columns, size of iscol_local */
223ca3fa75bSLois Curfman McInnes 
224ca3fa75bSLois Curfman McInnes   /* No parallel redistribution currently supported! Should really check each index set
2257eba5e9cSLois Curfman McInnes      to comfirm that it is OK.  ... Currently supports only submatrix same partitioning as
2267eba5e9cSLois Curfman McInnes      original matrix! */
227ca3fa75bSLois Curfman McInnes 
228ca3fa75bSLois Curfman McInnes   ierr = MatGetLocalSize(A,&nlrows,&nlcols);CHKERRQ(ierr);
2297eba5e9cSLois Curfman McInnes   ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr);
230ca3fa75bSLois Curfman McInnes 
231ca3fa75bSLois Curfman McInnes   /* Check submatrix call */
232ca3fa75bSLois Curfman McInnes   if (scall == MAT_REUSE_MATRIX) {
233e32f2f54SBarry Smith     /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */
2347eba5e9cSLois Curfman McInnes     /* Really need to test rows and column sizes! */
235ca3fa75bSLois Curfman McInnes     newmat = *B;
236ca3fa75bSLois Curfman McInnes   } else {
237ca3fa75bSLois Curfman McInnes     /* Create and fill new matrix */
238ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)A),&newmat);CHKERRQ(ierr);
2394aa3045dSJed Brown     ierr = MatSetSizes(newmat,nrows,ncols,PETSC_DECIDE,Ncols);CHKERRQ(ierr);
2407adad957SLisandro Dalcin     ierr = MatSetType(newmat,((PetscObject)A)->type_name);CHKERRQ(ierr);
2410298fd71SBarry Smith     ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr);
242ca3fa75bSLois Curfman McInnes   }
243ca3fa75bSLois Curfman McInnes 
244ca3fa75bSLois Curfman McInnes   /* Now extract the data pointers and do the copy, column at a time */
245ca3fa75bSLois Curfman McInnes   newmatd = (Mat_MPIDense*)newmat->data;
246*637a0070SStefano Zampini   ierr = MatDenseGetArray(newmatd->A,&bv);CHKERRQ(ierr);
247*637a0070SStefano Zampini   ierr = MatDenseGetArrayRead(mat->A,&v);CHKERRQ(ierr);
248*637a0070SStefano Zampini   ierr = MatDenseGetLDA(mat->A,&lda);CHKERRQ(ierr);
2494aa3045dSJed Brown   for (i=0; i<Ncols; i++) {
250*637a0070SStefano Zampini     const PetscScalar *av = v + lda*icol[i];
251ca3fa75bSLois Curfman McInnes     for (j=0; j<nrows; j++) {
2527eba5e9cSLois Curfman McInnes       *bv++ = av[irow[j] - rstart];
253ca3fa75bSLois Curfman McInnes     }
254ca3fa75bSLois Curfman McInnes   }
255*637a0070SStefano Zampini   ierr = MatDenseRestoreArrayRead(mat->A,&v);CHKERRQ(ierr);
256*637a0070SStefano Zampini   ierr = MatDenseRestoreArray(newmatd->A,&bv);CHKERRQ(ierr);
257ca3fa75bSLois Curfman McInnes 
258ca3fa75bSLois Curfman McInnes   /* Assemble the matrices so that the correct flags are set */
259ca3fa75bSLois Curfman McInnes   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
260ca3fa75bSLois Curfman McInnes   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
261ca3fa75bSLois Curfman McInnes 
262ca3fa75bSLois Curfman McInnes   /* Free work space */
263ca3fa75bSLois Curfman McInnes   ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr);
2645bdf786aSShri Abhyankar   ierr = ISRestoreIndices(iscol_local,&icol);CHKERRQ(ierr);
26532bb1f2dSLisandro Dalcin   ierr = ISDestroy(&iscol_local);CHKERRQ(ierr);
266ca3fa75bSLois Curfman McInnes   *B   = newmat;
267ca3fa75bSLois Curfman McInnes   PetscFunctionReturn(0);
268ca3fa75bSLois Curfman McInnes }
269ca3fa75bSLois Curfman McInnes 
270*637a0070SStefano Zampini PetscErrorCode MatDenseRestoreArray_MPIDense(Mat A,PetscScalar **array)
271ff14e315SSatish Balay {
27273a71a0fSBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
27373a71a0fSBarry Smith   PetscErrorCode ierr;
27473a71a0fSBarry Smith 
2753a40ed3dSBarry Smith   PetscFunctionBegin;
2768c778c55SBarry Smith   ierr = MatDenseRestoreArray(a->A,array);CHKERRQ(ierr);
2773a40ed3dSBarry Smith   PetscFunctionReturn(0);
278ff14e315SSatish Balay }
279ff14e315SSatish Balay 
280*637a0070SStefano Zampini PetscErrorCode MatDenseRestoreArrayRead_MPIDense(Mat A,const PetscScalar **array)
2818572280aSBarry Smith {
2828572280aSBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
2838572280aSBarry Smith   PetscErrorCode ierr;
2848572280aSBarry Smith 
2858572280aSBarry Smith   PetscFunctionBegin;
2868572280aSBarry Smith   ierr = MatDenseRestoreArrayRead(a->A,array);CHKERRQ(ierr);
2878572280aSBarry Smith   PetscFunctionReturn(0);
2888572280aSBarry Smith }
2898572280aSBarry Smith 
290dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode)
2918965ea79SLois Curfman McInnes {
29239ddd567SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
293dfbe8321SBarry Smith   PetscErrorCode ierr;
29413f74950SBarry Smith   PetscInt       nstash,reallocs;
2958965ea79SLois Curfman McInnes 
2963a40ed3dSBarry Smith   PetscFunctionBegin;
297910cf402Sprj-   if (mdn->donotstash || mat->nooffprocentries) return(0);
2988965ea79SLois Curfman McInnes 
299d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
3008798bf22SSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
301ae15b995SBarry Smith   ierr = PetscInfo2(mdn->A,"Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
3023a40ed3dSBarry Smith   PetscFunctionReturn(0);
3038965ea79SLois Curfman McInnes }
3048965ea79SLois Curfman McInnes 
305dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode)
3068965ea79SLois Curfman McInnes {
30739ddd567SLois Curfman McInnes   Mat_MPIDense   *mdn=(Mat_MPIDense*)mat->data;
3086849ba73SBarry Smith   PetscErrorCode ierr;
30913f74950SBarry Smith   PetscInt       i,*row,*col,flg,j,rstart,ncols;
31013f74950SBarry Smith   PetscMPIInt    n;
31187828ca2SBarry Smith   PetscScalar    *val;
3128965ea79SLois Curfman McInnes 
3133a40ed3dSBarry Smith   PetscFunctionBegin;
314910cf402Sprj-   if (!mdn->donotstash && !mat->nooffprocentries) {
3158965ea79SLois Curfman McInnes     /*  wait on receives */
3167ef1d9bdSSatish Balay     while (1) {
3178798bf22SSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
3187ef1d9bdSSatish Balay       if (!flg) break;
3198965ea79SLois Curfman McInnes 
3207ef1d9bdSSatish Balay       for (i=0; i<n;) {
3217ef1d9bdSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
3222205254eSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
3232205254eSKarl Rupp           if (row[j] != rstart) break;
3242205254eSKarl Rupp         }
3257ef1d9bdSSatish Balay         if (j < n) ncols = j-i;
3267ef1d9bdSSatish Balay         else       ncols = n-i;
3277ef1d9bdSSatish Balay         /* Now assemble all these values with a single function call */
3284b4eb8d3SJed Brown         ierr = MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr);
3297ef1d9bdSSatish Balay         i    = j;
3308965ea79SLois Curfman McInnes       }
3317ef1d9bdSSatish Balay     }
3328798bf22SSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
333910cf402Sprj-   }
3348965ea79SLois Curfman McInnes 
33539ddd567SLois Curfman McInnes   ierr = MatAssemblyBegin(mdn->A,mode);CHKERRQ(ierr);
33639ddd567SLois Curfman McInnes   ierr = MatAssemblyEnd(mdn->A,mode);CHKERRQ(ierr);
3378965ea79SLois Curfman McInnes 
3386d4a8577SBarry Smith   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
33939ddd567SLois Curfman McInnes     ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr);
3408965ea79SLois Curfman McInnes   }
3413a40ed3dSBarry Smith   PetscFunctionReturn(0);
3428965ea79SLois Curfman McInnes }
3438965ea79SLois Curfman McInnes 
344dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIDense(Mat A)
3458965ea79SLois Curfman McInnes {
346dfbe8321SBarry Smith   PetscErrorCode ierr;
34739ddd567SLois Curfman McInnes   Mat_MPIDense   *l = (Mat_MPIDense*)A->data;
3483a40ed3dSBarry Smith 
3493a40ed3dSBarry Smith   PetscFunctionBegin;
3503a40ed3dSBarry Smith   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
3513a40ed3dSBarry Smith   PetscFunctionReturn(0);
3528965ea79SLois Curfman McInnes }
3538965ea79SLois Curfman McInnes 
354*637a0070SStefano Zampini PetscErrorCode MatZeroRows_MPIDense(Mat A,PetscInt n,const PetscInt rows[],PetscScalar diag,Vec x,Vec b)
3558965ea79SLois Curfman McInnes {
35639ddd567SLois Curfman McInnes   Mat_MPIDense      *l = (Mat_MPIDense*)A->data;
3576849ba73SBarry Smith   PetscErrorCode    ierr;
358*637a0070SStefano Zampini   PetscInt          i,len,*lrows;
359*637a0070SStefano Zampini 
360*637a0070SStefano Zampini   PetscFunctionBegin;
361*637a0070SStefano Zampini   /* get locally owned rows */
362*637a0070SStefano Zampini   ierr = PetscLayoutMapLocal(A->rmap,n,rows,&len,&lrows,NULL);CHKERRQ(ierr);
363*637a0070SStefano Zampini   /* fix right hand side if needed */
364*637a0070SStefano Zampini   if (x && b) {
36597b48c8fSBarry Smith     const PetscScalar *xx;
36697b48c8fSBarry Smith     PetscScalar       *bb;
3678965ea79SLois Curfman McInnes 
36897b48c8fSBarry Smith     ierr = VecGetArrayRead(x, &xx);CHKERRQ(ierr);
369*637a0070SStefano Zampini     ierr = VecGetArrayWrite(b, &bb);CHKERRQ(ierr);
370*637a0070SStefano Zampini     for (i=0;i<len;++i) bb[lrows[i]] = diag*xx[lrows[i]];
37197b48c8fSBarry Smith     ierr = VecRestoreArrayRead(x, &xx);CHKERRQ(ierr);
372*637a0070SStefano Zampini     ierr = VecRestoreArrayWrite(b, &bb);CHKERRQ(ierr);
37397b48c8fSBarry Smith   }
374*637a0070SStefano Zampini   ierr = MatZeroRows(l->A,len,lrows,0.0,NULL,NULL);CHKERRQ(ierr);
375e2eb51b1SBarry Smith   if (diag != 0.0) {
376*637a0070SStefano Zampini     Vec d;
377b9679d65SBarry Smith 
378*637a0070SStefano Zampini     ierr = MatCreateVecs(A,NULL,&d);CHKERRQ(ierr);
379*637a0070SStefano Zampini     ierr = VecSet(d,diag);CHKERRQ(ierr);
380*637a0070SStefano Zampini     ierr = MatDiagonalSet(A,d,INSERT_VALUES);CHKERRQ(ierr);
381*637a0070SStefano Zampini     ierr = VecDestroy(&d);CHKERRQ(ierr);
382b9679d65SBarry Smith   }
383606d414cSSatish Balay   ierr = PetscFree(lrows);CHKERRQ(ierr);
3843a40ed3dSBarry Smith   PetscFunctionReturn(0);
3858965ea79SLois Curfman McInnes }
3868965ea79SLois Curfman McInnes 
387cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMult_SeqDense(Mat,Vec,Vec);
388cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultAdd_SeqDense(Mat,Vec,Vec,Vec);
389cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTranspose_SeqDense(Mat,Vec,Vec);
390cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTransposeAdd_SeqDense(Mat,Vec,Vec,Vec);
391cc2e6a90SBarry Smith 
392dfbe8321SBarry Smith PetscErrorCode MatMult_MPIDense(Mat mat,Vec xx,Vec yy)
3938965ea79SLois Curfman McInnes {
39439ddd567SLois Curfman McInnes   Mat_MPIDense      *mdn = (Mat_MPIDense*)mat->data;
395dfbe8321SBarry Smith   PetscErrorCode    ierr;
396*637a0070SStefano Zampini   const PetscScalar *ax;
397*637a0070SStefano Zampini   PetscScalar       *ay;
398c456f294SBarry Smith 
3993a40ed3dSBarry Smith   PetscFunctionBegin;
400*637a0070SStefano Zampini   ierr = VecGetArrayReadInPlace(xx,&ax);CHKERRQ(ierr);
401*637a0070SStefano Zampini   ierr = VecGetArrayInPlace(mdn->lvec,&ay);CHKERRQ(ierr);
402*637a0070SStefano Zampini   ierr = PetscSFBcastBegin(mdn->Mvctx,MPIU_SCALAR,ax,ay);CHKERRQ(ierr);
403*637a0070SStefano Zampini   ierr = PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ax,ay);CHKERRQ(ierr);
404*637a0070SStefano Zampini   ierr = VecRestoreArrayInPlace(mdn->lvec,&ay);CHKERRQ(ierr);
405*637a0070SStefano Zampini   ierr = VecRestoreArrayReadInPlace(xx,&ax);CHKERRQ(ierr);
406*637a0070SStefano Zampini   ierr = (*mdn->A->ops->mult)(mdn->A,mdn->lvec,yy);CHKERRQ(ierr);
4073a40ed3dSBarry Smith   PetscFunctionReturn(0);
4088965ea79SLois Curfman McInnes }
4098965ea79SLois Curfman McInnes 
410dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz)
4118965ea79SLois Curfman McInnes {
41239ddd567SLois Curfman McInnes   Mat_MPIDense      *mdn = (Mat_MPIDense*)mat->data;
413dfbe8321SBarry Smith   PetscErrorCode    ierr;
414*637a0070SStefano Zampini   const PetscScalar *ax;
415*637a0070SStefano Zampini   PetscScalar       *ay;
416c456f294SBarry Smith 
4173a40ed3dSBarry Smith   PetscFunctionBegin;
418*637a0070SStefano Zampini   ierr = VecGetArrayReadInPlace(xx,&ax);CHKERRQ(ierr);
419*637a0070SStefano Zampini   ierr = VecGetArrayInPlace(mdn->lvec,&ay);CHKERRQ(ierr);
420*637a0070SStefano Zampini   ierr = PetscSFBcastBegin(mdn->Mvctx,MPIU_SCALAR,ax,ay);CHKERRQ(ierr);
421*637a0070SStefano Zampini   ierr = PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ax,ay);CHKERRQ(ierr);
422*637a0070SStefano Zampini   ierr = VecRestoreArrayInPlace(mdn->lvec,&ay);CHKERRQ(ierr);
423*637a0070SStefano Zampini   ierr = VecRestoreArrayReadInPlace(xx,&ax);CHKERRQ(ierr);
424*637a0070SStefano Zampini   ierr = (*mdn->A->ops->multadd)(mdn->A,mdn->lvec,yy,zz);CHKERRQ(ierr);
4253a40ed3dSBarry Smith   PetscFunctionReturn(0);
4268965ea79SLois Curfman McInnes }
4278965ea79SLois Curfman McInnes 
428dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIDense(Mat A,Vec xx,Vec yy)
429096963f5SLois Curfman McInnes {
430096963f5SLois Curfman McInnes   Mat_MPIDense      *a = (Mat_MPIDense*)A->data;
431dfbe8321SBarry Smith   PetscErrorCode    ierr;
432*637a0070SStefano Zampini   const PetscScalar *ax;
433*637a0070SStefano Zampini   PetscScalar       *ay;
434096963f5SLois Curfman McInnes 
4353a40ed3dSBarry Smith   PetscFunctionBegin;
436*637a0070SStefano Zampini   ierr = VecSet(yy,0.0);CHKERRQ(ierr);
437*637a0070SStefano Zampini   ierr = (*a->A->ops->multtranspose)(a->A,xx,a->lvec);CHKERRQ(ierr);
438*637a0070SStefano Zampini   ierr = VecGetArrayReadInPlace(a->lvec,&ax);CHKERRQ(ierr);
439*637a0070SStefano Zampini   ierr = VecGetArrayInPlace(yy,&ay);CHKERRQ(ierr);
440*637a0070SStefano Zampini   ierr = PetscSFReduceBegin(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM);CHKERRQ(ierr);
441*637a0070SStefano Zampini   ierr = PetscSFReduceEnd(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM);CHKERRQ(ierr);
442*637a0070SStefano Zampini   ierr = VecRestoreArrayReadInPlace(a->lvec,&ax);CHKERRQ(ierr);
443*637a0070SStefano Zampini   ierr = VecRestoreArrayInPlace(yy,&ay);CHKERRQ(ierr);
4443a40ed3dSBarry Smith   PetscFunctionReturn(0);
445096963f5SLois Curfman McInnes }
446096963f5SLois Curfman McInnes 
447dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz)
448096963f5SLois Curfman McInnes {
449096963f5SLois Curfman McInnes   Mat_MPIDense      *a = (Mat_MPIDense*)A->data;
450dfbe8321SBarry Smith   PetscErrorCode    ierr;
451*637a0070SStefano Zampini   const PetscScalar *ax;
452*637a0070SStefano Zampini   PetscScalar       *ay;
453096963f5SLois Curfman McInnes 
4543a40ed3dSBarry Smith   PetscFunctionBegin;
4553501a2bdSLois Curfman McInnes   ierr = VecCopy(yy,zz);CHKERRQ(ierr);
456*637a0070SStefano Zampini   ierr = (*a->A->ops->multtranspose)(a->A,xx,a->lvec);CHKERRQ(ierr);
457*637a0070SStefano Zampini   ierr = VecGetArrayReadInPlace(a->lvec,&ax);CHKERRQ(ierr);
458*637a0070SStefano Zampini   ierr = VecGetArrayInPlace(zz,&ay);CHKERRQ(ierr);
459*637a0070SStefano Zampini   ierr = PetscSFReduceBegin(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM);CHKERRQ(ierr);
460*637a0070SStefano Zampini   ierr = PetscSFReduceEnd(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM);CHKERRQ(ierr);
461*637a0070SStefano Zampini   ierr = VecRestoreArrayReadInPlace(a->lvec,&ax);CHKERRQ(ierr);
462*637a0070SStefano Zampini   ierr = VecRestoreArrayInPlace(zz,&ay);CHKERRQ(ierr);
4633a40ed3dSBarry Smith   PetscFunctionReturn(0);
464096963f5SLois Curfman McInnes }
465096963f5SLois Curfman McInnes 
466dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIDense(Mat A,Vec v)
4678965ea79SLois Curfman McInnes {
46839ddd567SLois Curfman McInnes   Mat_MPIDense      *a    = (Mat_MPIDense*)A->data;
469dfbe8321SBarry Smith   PetscErrorCode    ierr;
470*637a0070SStefano Zampini   PetscInt          lda,len,i,n,m = A->rmap->n,radd;
47187828ca2SBarry Smith   PetscScalar       *x,zero = 0.0;
472*637a0070SStefano Zampini   const PetscScalar *av;
473ed3cc1f0SBarry Smith 
4743a40ed3dSBarry Smith   PetscFunctionBegin;
4752dcb1b2aSMatthew Knepley   ierr = VecSet(v,zero);CHKERRQ(ierr);
4761ebc52fbSHong Zhang   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
477096963f5SLois Curfman McInnes   ierr = VecGetSize(v,&n);CHKERRQ(ierr);
478e32f2f54SBarry Smith   if (n != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec");
479d0f46423SBarry Smith   len  = PetscMin(a->A->rmap->n,a->A->cmap->n);
480d0f46423SBarry Smith   radd = A->rmap->rstart*m;
481*637a0070SStefano Zampini   ierr = MatDenseGetArrayRead(a->A,&av);CHKERRQ(ierr);
482*637a0070SStefano Zampini   ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr);
48344cd7ae7SLois Curfman McInnes   for (i=0; i<len; i++) {
484*637a0070SStefano Zampini     x[i] = av[radd + i*lda + i];
485096963f5SLois Curfman McInnes   }
486*637a0070SStefano Zampini   ierr = MatDenseRestoreArrayRead(a->A,&av);CHKERRQ(ierr);
4871ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
4883a40ed3dSBarry Smith   PetscFunctionReturn(0);
4898965ea79SLois Curfman McInnes }
4908965ea79SLois Curfman McInnes 
491dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIDense(Mat mat)
4928965ea79SLois Curfman McInnes {
4933501a2bdSLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
494dfbe8321SBarry Smith   PetscErrorCode ierr;
495ed3cc1f0SBarry Smith 
4963a40ed3dSBarry Smith   PetscFunctionBegin;
497aa482453SBarry Smith #if defined(PETSC_USE_LOG)
498d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D, Cols=%D",mat->rmap->N,mat->cmap->N);
4998965ea79SLois Curfman McInnes #endif
5008798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
5016bf464f9SBarry Smith   ierr = MatDestroy(&mdn->A);CHKERRQ(ierr);
5026bf464f9SBarry Smith   ierr = VecDestroy(&mdn->lvec);CHKERRQ(ierr);
503*637a0070SStefano Zampini   ierr = PetscSFDestroy(&mdn->Mvctx);CHKERRQ(ierr);
50401b82886SBarry Smith 
505bf0cc555SLisandro Dalcin   ierr = PetscFree(mat->data);CHKERRQ(ierr);
506dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
5078baccfbdSHong Zhang 
50849a6ff4bSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",NULL);CHKERRQ(ierr);
5098baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",NULL);CHKERRQ(ierr);
5108572280aSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",NULL);CHKERRQ(ierr);
5118572280aSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",NULL);CHKERRQ(ierr);
5128572280aSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",NULL);CHKERRQ(ierr);
513d3042a70SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",NULL);CHKERRQ(ierr);
514d3042a70SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",NULL);CHKERRQ(ierr);
5158baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
5168baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",NULL);CHKERRQ(ierr);
5178baccfbdSHong Zhang #endif
518bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",NULL);CHKERRQ(ierr);
5194222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaij_mpidense_C",NULL);CHKERRQ(ierr);
5204222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaij_C",NULL);CHKERRQ(ierr);
521bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C",NULL);CHKERRQ(ierr);
522bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C",NULL);CHKERRQ(ierr);
52352c5f739Sprj-   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_nest_mpidense_C",NULL);CHKERRQ(ierr);
52452c5f739Sprj-   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_nest_mpidense_C",NULL);CHKERRQ(ierr);
5258baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultSymbolic_mpiaij_mpidense_C",NULL);CHKERRQ(ierr);
5268baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultNumeric_mpiaij_mpidense_C",NULL);CHKERRQ(ierr);
52786aefd0dSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",NULL);CHKERRQ(ierr);
52886aefd0dSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",NULL);CHKERRQ(ierr);
5293a40ed3dSBarry Smith   PetscFunctionReturn(0);
5308965ea79SLois Curfman McInnes }
53139ddd567SLois Curfman McInnes 
53252c5f739Sprj- PETSC_INTERN PetscErrorCode MatView_SeqDense(Mat,PetscViewer);
53352c5f739Sprj- 
5349804daf3SBarry Smith #include <petscdraw.h>
5356849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
5368965ea79SLois Curfman McInnes {
53739ddd567SLois Curfman McInnes   Mat_MPIDense      *mdn = (Mat_MPIDense*)mat->data;
538dfbe8321SBarry Smith   PetscErrorCode    ierr;
5397da1fb6eSBarry Smith   PetscMPIInt       rank = mdn->rank;
54019fd82e9SBarry Smith   PetscViewerType   vtype;
541ace3abfcSBarry Smith   PetscBool         iascii,isdraw;
542b0a32e0cSBarry Smith   PetscViewer       sviewer;
543f3ef73ceSBarry Smith   PetscViewerFormat format;
5448965ea79SLois Curfman McInnes 
5453a40ed3dSBarry Smith   PetscFunctionBegin;
546251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
547251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
54832077d6dSBarry Smith   if (iascii) {
549b0a32e0cSBarry Smith     ierr = PetscViewerGetType(viewer,&vtype);CHKERRQ(ierr);
550b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
551456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
5524e220ebcSLois Curfman McInnes       MatInfo info;
553888f2ed8SSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
5541575c14dSBarry Smith       ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr);
5557b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"  [%d] local rows %D nz %D nz alloced %D mem %D \n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory);CHKERRQ(ierr);
556b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
5571575c14dSBarry Smith       ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr);
558*637a0070SStefano Zampini       ierr = PetscSFView(mdn->Mvctx,viewer);CHKERRQ(ierr);
5593a40ed3dSBarry Smith       PetscFunctionReturn(0);
560fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
5613a40ed3dSBarry Smith       PetscFunctionReturn(0);
5628965ea79SLois Curfman McInnes     }
563f1af5d2fSBarry Smith   } else if (isdraw) {
564b0a32e0cSBarry Smith     PetscDraw draw;
565ace3abfcSBarry Smith     PetscBool isnull;
566f1af5d2fSBarry Smith 
567b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
568b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr);
569f1af5d2fSBarry Smith     if (isnull) PetscFunctionReturn(0);
570f1af5d2fSBarry Smith   }
57177ed5343SBarry Smith 
5727da1fb6eSBarry Smith   {
5738965ea79SLois Curfman McInnes     /* assemble the entire matrix onto first processor. */
5748965ea79SLois Curfman McInnes     Mat         A;
575d0f46423SBarry Smith     PetscInt    M = mat->rmap->N,N = mat->cmap->N,m,row,i,nz;
576ba8c8a56SBarry Smith     PetscInt    *cols;
577ba8c8a56SBarry Smith     PetscScalar *vals;
5788965ea79SLois Curfman McInnes 
579ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr);
5808965ea79SLois Curfman McInnes     if (!rank) {
581f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
5823a40ed3dSBarry Smith     } else {
583f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
5848965ea79SLois Curfman McInnes     }
5857adad957SLisandro Dalcin     /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */
586878740d9SKris Buschelman     ierr = MatSetType(A,MATMPIDENSE);CHKERRQ(ierr);
5870298fd71SBarry Smith     ierr = MatMPIDenseSetPreallocation(A,NULL);CHKERRQ(ierr);
5883bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr);
5898965ea79SLois Curfman McInnes 
59039ddd567SLois Curfman McInnes     /* Copy the matrix ... This isn't the most efficient means,
59139ddd567SLois Curfman McInnes        but it's quick for now */
59251022da4SBarry Smith     A->insertmode = INSERT_VALUES;
5932205254eSKarl Rupp 
5942205254eSKarl Rupp     row = mat->rmap->rstart;
5952205254eSKarl Rupp     m   = mdn->A->rmap->n;
5968965ea79SLois Curfman McInnes     for (i=0; i<m; i++) {
597ba8c8a56SBarry Smith       ierr = MatGetRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr);
598ba8c8a56SBarry Smith       ierr = MatSetValues_MPIDense(A,1,&row,nz,cols,vals,INSERT_VALUES);CHKERRQ(ierr);
599ba8c8a56SBarry Smith       ierr = MatRestoreRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr);
60039ddd567SLois Curfman McInnes       row++;
6018965ea79SLois Curfman McInnes     }
6028965ea79SLois Curfman McInnes 
6036d4a8577SBarry Smith     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
6046d4a8577SBarry Smith     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
6053f08860eSBarry Smith     ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr);
606b9b97703SBarry Smith     if (!rank) {
6071a9d3c3cSBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPIDense*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr);
6087da1fb6eSBarry Smith       ierr = MatView_SeqDense(((Mat_MPIDense*)(A->data))->A,sviewer);CHKERRQ(ierr);
6098965ea79SLois Curfman McInnes     }
6103f08860eSBarry Smith     ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr);
611b0a32e0cSBarry Smith     ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
6126bf464f9SBarry Smith     ierr = MatDestroy(&A);CHKERRQ(ierr);
6138965ea79SLois Curfman McInnes   }
6143a40ed3dSBarry Smith   PetscFunctionReturn(0);
6158965ea79SLois Curfman McInnes }
6168965ea79SLois Curfman McInnes 
617dfbe8321SBarry Smith PetscErrorCode MatView_MPIDense(Mat mat,PetscViewer viewer)
6188965ea79SLois Curfman McInnes {
619dfbe8321SBarry Smith   PetscErrorCode ierr;
620ace3abfcSBarry Smith   PetscBool      iascii,isbinary,isdraw,issocket;
6218965ea79SLois Curfman McInnes 
622433994e6SBarry Smith   PetscFunctionBegin;
623251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
624251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
625251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr);
626251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
6270f5bd95cSBarry Smith 
62832077d6dSBarry Smith   if (iascii || issocket || isdraw) {
629f1af5d2fSBarry Smith     ierr = MatView_MPIDense_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
6300f5bd95cSBarry Smith   } else if (isbinary) {
6318491ab44SLisandro Dalcin     ierr = MatView_Dense_Binary(mat,viewer);CHKERRQ(ierr);
63211aeaf0aSBarry Smith   }
6333a40ed3dSBarry Smith   PetscFunctionReturn(0);
6348965ea79SLois Curfman McInnes }
6358965ea79SLois Curfman McInnes 
636dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info)
6378965ea79SLois Curfman McInnes {
6383501a2bdSLois Curfman McInnes   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
6393501a2bdSLois Curfman McInnes   Mat            mdn  = mat->A;
640dfbe8321SBarry Smith   PetscErrorCode ierr;
6413966268fSBarry Smith   PetscLogDouble isend[5],irecv[5];
6428965ea79SLois Curfman McInnes 
6433a40ed3dSBarry Smith   PetscFunctionBegin;
6444e220ebcSLois Curfman McInnes   info->block_size = 1.0;
6452205254eSKarl Rupp 
6464e220ebcSLois Curfman McInnes   ierr = MatGetInfo(mdn,MAT_LOCAL,info);CHKERRQ(ierr);
6472205254eSKarl Rupp 
6484e220ebcSLois Curfman McInnes   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
6494e220ebcSLois Curfman McInnes   isend[3] = info->memory;  isend[4] = info->mallocs;
6508965ea79SLois Curfman McInnes   if (flag == MAT_LOCAL) {
6514e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
6524e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
6534e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
6544e220ebcSLois Curfman McInnes     info->memory       = isend[3];
6554e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
6568965ea79SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_MAX) {
6573966268fSBarry Smith     ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
6582205254eSKarl Rupp 
6594e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
6604e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
6614e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
6624e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
6634e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
6648965ea79SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_SUM) {
6653966268fSBarry Smith     ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
6662205254eSKarl Rupp 
6674e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
6684e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
6694e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
6704e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
6714e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
6728965ea79SLois Curfman McInnes   }
6734e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
6744e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
6754e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
6763a40ed3dSBarry Smith   PetscFunctionReturn(0);
6778965ea79SLois Curfman McInnes }
6788965ea79SLois Curfman McInnes 
679ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIDense(Mat A,MatOption op,PetscBool flg)
6808965ea79SLois Curfman McInnes {
68139ddd567SLois Curfman McInnes   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
682dfbe8321SBarry Smith   PetscErrorCode ierr;
6838965ea79SLois Curfman McInnes 
6843a40ed3dSBarry Smith   PetscFunctionBegin;
68512c028f9SKris Buschelman   switch (op) {
686512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
68712c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
68812c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
68943674050SBarry Smith     MatCheckPreallocated(A,1);
6904e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
69112c028f9SKris Buschelman     break;
69212c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
69343674050SBarry Smith     MatCheckPreallocated(A,1);
6944e0d8c25SBarry Smith     a->roworiented = flg;
6954e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
69612c028f9SKris Buschelman     break;
6974e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
69813fa8e87SLisandro Dalcin   case MAT_KEEP_NONZERO_PATTERN:
69912c028f9SKris Buschelman   case MAT_USE_HASH_TABLE:
700071fcb05SBarry Smith   case MAT_SORTED_FULL:
701290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
70212c028f9SKris Buschelman     break;
70312c028f9SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
7044e0d8c25SBarry Smith     a->donotstash = flg;
70512c028f9SKris Buschelman     break;
70677e54ba9SKris Buschelman   case MAT_SYMMETRIC:
70777e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
7089a4540c5SBarry Smith   case MAT_HERMITIAN:
7099a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
710600fe468SBarry Smith   case MAT_IGNORE_LOWER_TRIANGULAR:
7115d7aebe8SStefano Zampini   case MAT_IGNORE_ZERO_ENTRIES:
712290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
71377e54ba9SKris Buschelman     break;
71412c028f9SKris Buschelman   default:
715e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %s",MatOptions[op]);
7163a40ed3dSBarry Smith   }
7173a40ed3dSBarry Smith   PetscFunctionReturn(0);
7188965ea79SLois Curfman McInnes }
7198965ea79SLois Curfman McInnes 
720dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIDense(Mat A,Vec ll,Vec rr)
7215b2fa520SLois Curfman McInnes {
7225b2fa520SLois Curfman McInnes   Mat_MPIDense      *mdn = (Mat_MPIDense*)A->data;
723*637a0070SStefano Zampini   const PetscScalar *l;
724*637a0070SStefano Zampini   PetscScalar       x,*v,*vv,*r;
725dfbe8321SBarry Smith   PetscErrorCode    ierr;
726*637a0070SStefano Zampini   PetscInt          i,j,s2a,s3a,s2,s3,m=mdn->A->rmap->n,n=mdn->A->cmap->n,lda;
7275b2fa520SLois Curfman McInnes 
7285b2fa520SLois Curfman McInnes   PetscFunctionBegin;
729*637a0070SStefano Zampini   ierr = MatDenseGetArray(mdn->A,&vv);CHKERRQ(ierr);
730*637a0070SStefano Zampini   ierr = MatDenseGetLDA(mdn->A,&lda);CHKERRQ(ierr);
73172d926a5SLois Curfman McInnes   ierr = MatGetLocalSize(A,&s2,&s3);CHKERRQ(ierr);
7325b2fa520SLois Curfman McInnes   if (ll) {
73372d926a5SLois Curfman McInnes     ierr = VecGetLocalSize(ll,&s2a);CHKERRQ(ierr);
734*637a0070SStefano Zampini     if (s2a != s2) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vector non-conforming local size, %D != %D", s2a, s2);
735bca11509SBarry Smith     ierr = VecGetArrayRead(ll,&l);CHKERRQ(ierr);
7365b2fa520SLois Curfman McInnes     for (i=0; i<m; i++) {
7375b2fa520SLois Curfman McInnes       x = l[i];
738*637a0070SStefano Zampini       v = vv + i;
739*637a0070SStefano Zampini       for (j=0; j<n; j++) { (*v) *= x; v+= lda;}
7405b2fa520SLois Curfman McInnes     }
741bca11509SBarry Smith     ierr = VecRestoreArrayRead(ll,&l);CHKERRQ(ierr);
742*637a0070SStefano Zampini     ierr = PetscLogFlops(1.0*n*m);CHKERRQ(ierr);
7435b2fa520SLois Curfman McInnes   }
7445b2fa520SLois Curfman McInnes   if (rr) {
745*637a0070SStefano Zampini     const PetscScalar *ar;
746*637a0070SStefano Zampini 
747175be7b4SMatthew Knepley     ierr = VecGetLocalSize(rr,&s3a);CHKERRQ(ierr);
748e32f2f54SBarry Smith     if (s3a != s3) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vec non-conforming local size, %d != %d.", s3a, s3);
749*637a0070SStefano Zampini     ierr = VecGetArrayRead(rr,&ar);CHKERRQ(ierr);
750*637a0070SStefano Zampini     ierr = VecGetArray(mdn->lvec,&r);CHKERRQ(ierr);
751*637a0070SStefano Zampini     ierr = PetscSFBcastBegin(mdn->Mvctx,MPIU_SCALAR,ar,r);CHKERRQ(ierr);
752*637a0070SStefano Zampini     ierr = PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ar,r);CHKERRQ(ierr);
753*637a0070SStefano Zampini     ierr = VecRestoreArrayRead(rr,&ar);CHKERRQ(ierr);
7545b2fa520SLois Curfman McInnes     for (i=0; i<n; i++) {
7555b2fa520SLois Curfman McInnes       x = r[i];
756*637a0070SStefano Zampini       v = vv + i*lda;
7572205254eSKarl Rupp       for (j=0; j<m; j++) (*v++) *= x;
7585b2fa520SLois Curfman McInnes     }
759*637a0070SStefano Zampini     ierr = VecRestoreArray(mdn->lvec,&r);CHKERRQ(ierr);
760*637a0070SStefano Zampini     ierr = PetscLogFlops(1.0*n*m);CHKERRQ(ierr);
7615b2fa520SLois Curfman McInnes   }
762*637a0070SStefano Zampini   ierr = MatDenseRestoreArray(mdn->A,&vv);CHKERRQ(ierr);
7635b2fa520SLois Curfman McInnes   PetscFunctionReturn(0);
7645b2fa520SLois Curfman McInnes }
7655b2fa520SLois Curfman McInnes 
766dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIDense(Mat A,NormType type,PetscReal *nrm)
767096963f5SLois Curfman McInnes {
7683501a2bdSLois Curfman McInnes   Mat_MPIDense      *mdn = (Mat_MPIDense*)A->data;
769dfbe8321SBarry Smith   PetscErrorCode    ierr;
77013f74950SBarry Smith   PetscInt          i,j;
771329f5518SBarry Smith   PetscReal         sum = 0.0;
772*637a0070SStefano Zampini   const PetscScalar *av,*v;
7733501a2bdSLois Curfman McInnes 
7743a40ed3dSBarry Smith   PetscFunctionBegin;
775*637a0070SStefano Zampini   ierr = MatDenseGetArrayRead(mdn->A,&av);CHKERRQ(ierr);
776*637a0070SStefano Zampini   v    = av;
7773501a2bdSLois Curfman McInnes   if (mdn->size == 1) {
778064f8208SBarry Smith     ierr =  MatNorm(mdn->A,type,nrm);CHKERRQ(ierr);
7793501a2bdSLois Curfman McInnes   } else {
7803501a2bdSLois Curfman McInnes     if (type == NORM_FROBENIUS) {
781d0f46423SBarry Smith       for (i=0; i<mdn->A->cmap->n*mdn->A->rmap->n; i++) {
782329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
7833501a2bdSLois Curfman McInnes       }
784b2566f29SBarry Smith       ierr = MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
7858f1a2a5eSBarry Smith       *nrm = PetscSqrtReal(*nrm);
786dc0b31edSSatish Balay       ierr = PetscLogFlops(2.0*mdn->A->cmap->n*mdn->A->rmap->n);CHKERRQ(ierr);
7873a40ed3dSBarry Smith     } else if (type == NORM_1) {
788329f5518SBarry Smith       PetscReal *tmp,*tmp2;
789580bdb30SBarry Smith       ierr = PetscCalloc2(A->cmap->N,&tmp,A->cmap->N,&tmp2);CHKERRQ(ierr);
790064f8208SBarry Smith       *nrm = 0.0;
791*637a0070SStefano Zampini       v    = av;
792d0f46423SBarry Smith       for (j=0; j<mdn->A->cmap->n; j++) {
793d0f46423SBarry Smith         for (i=0; i<mdn->A->rmap->n; i++) {
79467e560aaSBarry Smith           tmp[j] += PetscAbsScalar(*v);  v++;
7953501a2bdSLois Curfman McInnes         }
7963501a2bdSLois Curfman McInnes       }
797b2566f29SBarry Smith       ierr = MPIU_Allreduce(tmp,tmp2,A->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
798d0f46423SBarry Smith       for (j=0; j<A->cmap->N; j++) {
799064f8208SBarry Smith         if (tmp2[j] > *nrm) *nrm = tmp2[j];
8003501a2bdSLois Curfman McInnes       }
8018627564fSBarry Smith       ierr = PetscFree2(tmp,tmp2);CHKERRQ(ierr);
802d0f46423SBarry Smith       ierr = PetscLogFlops(A->cmap->n*A->rmap->n);CHKERRQ(ierr);
8033a40ed3dSBarry Smith     } else if (type == NORM_INFINITY) { /* max row norm */
804329f5518SBarry Smith       PetscReal ntemp;
8053501a2bdSLois Curfman McInnes       ierr = MatNorm(mdn->A,type,&ntemp);CHKERRQ(ierr);
806b2566f29SBarry Smith       ierr = MPIU_Allreduce(&ntemp,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
807ce94432eSBarry Smith     } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"No support for two norm");
8083501a2bdSLois Curfman McInnes   }
809*637a0070SStefano Zampini   ierr = MatDenseRestoreArrayRead(mdn->A,&av);CHKERRQ(ierr);
8103a40ed3dSBarry Smith   PetscFunctionReturn(0);
8113501a2bdSLois Curfman McInnes }
8123501a2bdSLois Curfman McInnes 
813fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIDense(Mat A,MatReuse reuse,Mat *matout)
8143501a2bdSLois Curfman McInnes {
8153501a2bdSLois Curfman McInnes   Mat_MPIDense   *a    = (Mat_MPIDense*)A->data;
8163501a2bdSLois Curfman McInnes   Mat            B;
817d0f46423SBarry Smith   PetscInt       M = A->rmap->N,N = A->cmap->N,m,n,*rwork,rstart = A->rmap->rstart;
8186849ba73SBarry Smith   PetscErrorCode ierr;
819*637a0070SStefano Zampini   PetscInt       j,i,lda;
82087828ca2SBarry Smith   PetscScalar    *v;
8213501a2bdSLois Curfman McInnes 
8223a40ed3dSBarry Smith   PetscFunctionBegin;
823cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) {
824ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
825d0f46423SBarry Smith     ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr);
8267adad957SLisandro Dalcin     ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr);
8270298fd71SBarry Smith     ierr = MatMPIDenseSetPreallocation(B,NULL);CHKERRQ(ierr);
828*637a0070SStefano Zampini   } else B = *matout;
8293501a2bdSLois Curfman McInnes 
830*637a0070SStefano Zampini   m    = a->A->rmap->n; n = a->A->cmap->n;
831*637a0070SStefano Zampini   ierr = MatDenseGetArrayRead(a->A,(const PetscScalar**)&v);CHKERRQ(ierr);
832*637a0070SStefano Zampini   ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr);
833785e854fSJed Brown   ierr = PetscMalloc1(m,&rwork);CHKERRQ(ierr);
8343501a2bdSLois Curfman McInnes   for (i=0; i<m; i++) rwork[i] = rstart + i;
8351acff37aSSatish Balay   for (j=0; j<n; j++) {
8363501a2bdSLois Curfman McInnes     ierr = MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES);CHKERRQ(ierr);
837*637a0070SStefano Zampini     v   += lda;
8383501a2bdSLois Curfman McInnes   }
839*637a0070SStefano Zampini   ierr = MatDenseRestoreArrayRead(a->A,(const PetscScalar**)&v);CHKERRQ(ierr);
840606d414cSSatish Balay   ierr = PetscFree(rwork);CHKERRQ(ierr);
8416d4a8577SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
8426d4a8577SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
843cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) {
8443501a2bdSLois Curfman McInnes     *matout = B;
8453501a2bdSLois Curfman McInnes   } else {
84628be2f97SBarry Smith     ierr = MatHeaderMerge(A,&B);CHKERRQ(ierr);
8473501a2bdSLois Curfman McInnes   }
8483a40ed3dSBarry Smith   PetscFunctionReturn(0);
849096963f5SLois Curfman McInnes }
850096963f5SLois Curfman McInnes 
8516849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat*);
85252c5f739Sprj- PETSC_INTERN PetscErrorCode MatScale_MPIDense(Mat,PetscScalar);
8538965ea79SLois Curfman McInnes 
8544994cf47SJed Brown PetscErrorCode MatSetUp_MPIDense(Mat A)
855273d9f13SBarry Smith {
856dfbe8321SBarry Smith   PetscErrorCode ierr;
857273d9f13SBarry Smith 
858273d9f13SBarry Smith   PetscFunctionBegin;
85918992e5dSStefano Zampini   ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr);
86018992e5dSStefano Zampini   ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr);
86118992e5dSStefano Zampini   if (!A->preallocated) {
862273d9f13SBarry Smith     ierr = MatMPIDenseSetPreallocation(A,0);CHKERRQ(ierr);
86318992e5dSStefano Zampini   }
864273d9f13SBarry Smith   PetscFunctionReturn(0);
865273d9f13SBarry Smith }
866273d9f13SBarry Smith 
867488007eeSBarry Smith PetscErrorCode MatAXPY_MPIDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str)
868488007eeSBarry Smith {
869488007eeSBarry Smith   PetscErrorCode ierr;
870488007eeSBarry Smith   Mat_MPIDense   *A = (Mat_MPIDense*)Y->data, *B = (Mat_MPIDense*)X->data;
871488007eeSBarry Smith 
872488007eeSBarry Smith   PetscFunctionBegin;
873488007eeSBarry Smith   ierr = MatAXPY(A->A,alpha,B->A,str);CHKERRQ(ierr);
874488007eeSBarry Smith   PetscFunctionReturn(0);
875488007eeSBarry Smith }
876488007eeSBarry Smith 
8777087cfbeSBarry Smith PetscErrorCode MatConjugate_MPIDense(Mat mat)
878ba337c44SJed Brown {
879ba337c44SJed Brown   Mat_MPIDense   *a = (Mat_MPIDense*)mat->data;
880ba337c44SJed Brown   PetscErrorCode ierr;
881ba337c44SJed Brown 
882ba337c44SJed Brown   PetscFunctionBegin;
883ba337c44SJed Brown   ierr = MatConjugate(a->A);CHKERRQ(ierr);
884ba337c44SJed Brown   PetscFunctionReturn(0);
885ba337c44SJed Brown }
886ba337c44SJed Brown 
887ba337c44SJed Brown PetscErrorCode MatRealPart_MPIDense(Mat A)
888ba337c44SJed Brown {
889ba337c44SJed Brown   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
890ba337c44SJed Brown   PetscErrorCode ierr;
891ba337c44SJed Brown 
892ba337c44SJed Brown   PetscFunctionBegin;
893ba337c44SJed Brown   ierr = MatRealPart(a->A);CHKERRQ(ierr);
894ba337c44SJed Brown   PetscFunctionReturn(0);
895ba337c44SJed Brown }
896ba337c44SJed Brown 
897ba337c44SJed Brown PetscErrorCode MatImaginaryPart_MPIDense(Mat A)
898ba337c44SJed Brown {
899ba337c44SJed Brown   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
900ba337c44SJed Brown   PetscErrorCode ierr;
901ba337c44SJed Brown 
902ba337c44SJed Brown   PetscFunctionBegin;
903ba337c44SJed Brown   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
904ba337c44SJed Brown   PetscFunctionReturn(0);
905ba337c44SJed Brown }
906ba337c44SJed Brown 
90749a6ff4bSBarry Smith static PetscErrorCode MatGetColumnVector_MPIDense(Mat A,Vec v,PetscInt col)
90849a6ff4bSBarry Smith {
90949a6ff4bSBarry Smith   PetscErrorCode ierr;
910*637a0070SStefano Zampini   Mat_MPIDense   *a = (Mat_MPIDense*) A->data;
91149a6ff4bSBarry Smith 
91249a6ff4bSBarry Smith   PetscFunctionBegin;
913*637a0070SStefano Zampini   if (!a->A) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Missing local matrix");
914*637a0070SStefano Zampini   if (!a->A->ops->getcolumnvector) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Missing get column operation");
915*637a0070SStefano Zampini   ierr = (*a->A->ops->getcolumnvector)(a->A,v,col);CHKERRQ(ierr);
91649a6ff4bSBarry Smith   PetscFunctionReturn(0);
91749a6ff4bSBarry Smith }
91849a6ff4bSBarry Smith 
91952c5f739Sprj- PETSC_INTERN PetscErrorCode MatGetColumnNorms_SeqDense(Mat,NormType,PetscReal*);
92052c5f739Sprj- 
9210716a85fSBarry Smith PetscErrorCode MatGetColumnNorms_MPIDense(Mat A,NormType type,PetscReal *norms)
9220716a85fSBarry Smith {
9230716a85fSBarry Smith   PetscErrorCode ierr;
9240716a85fSBarry Smith   PetscInt       i,n;
9250716a85fSBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*) A->data;
9260716a85fSBarry Smith   PetscReal      *work;
9270716a85fSBarry Smith 
9280716a85fSBarry Smith   PetscFunctionBegin;
9290298fd71SBarry Smith   ierr = MatGetSize(A,NULL,&n);CHKERRQ(ierr);
930785e854fSJed Brown   ierr = PetscMalloc1(n,&work);CHKERRQ(ierr);
9310716a85fSBarry Smith   ierr = MatGetColumnNorms_SeqDense(a->A,type,work);CHKERRQ(ierr);
9320716a85fSBarry Smith   if (type == NORM_2) {
9330716a85fSBarry Smith     for (i=0; i<n; i++) work[i] *= work[i];
9340716a85fSBarry Smith   }
9350716a85fSBarry Smith   if (type == NORM_INFINITY) {
936b2566f29SBarry Smith     ierr = MPIU_Allreduce(work,norms,n,MPIU_REAL,MPIU_MAX,A->hdr.comm);CHKERRQ(ierr);
9370716a85fSBarry Smith   } else {
938b2566f29SBarry Smith     ierr = MPIU_Allreduce(work,norms,n,MPIU_REAL,MPIU_SUM,A->hdr.comm);CHKERRQ(ierr);
9390716a85fSBarry Smith   }
9400716a85fSBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
9410716a85fSBarry Smith   if (type == NORM_2) {
9428f1a2a5eSBarry Smith     for (i=0; i<n; i++) norms[i] = PetscSqrtReal(norms[i]);
9430716a85fSBarry Smith   }
9440716a85fSBarry Smith   PetscFunctionReturn(0);
9450716a85fSBarry Smith }
9460716a85fSBarry Smith 
947*637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA)
948*637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAPlaceArray_MPIDenseCUDA(Mat A, const PetscScalar *a)
949*637a0070SStefano Zampini {
950*637a0070SStefano Zampini   Mat_MPIDense   *l = (Mat_MPIDense*) A->data;
951*637a0070SStefano Zampini   PetscErrorCode ierr;
952*637a0070SStefano Zampini 
953*637a0070SStefano Zampini   PetscFunctionBegin;
954*637a0070SStefano Zampini   ierr = MatDenseCUDAPlaceArray(l->A,a);CHKERRQ(ierr);
955*637a0070SStefano Zampini   PetscFunctionReturn(0);
956*637a0070SStefano Zampini }
957*637a0070SStefano Zampini 
958*637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAResetArray_MPIDenseCUDA(Mat A)
959*637a0070SStefano Zampini {
960*637a0070SStefano Zampini   Mat_MPIDense   *l = (Mat_MPIDense*) A->data;
961*637a0070SStefano Zampini   PetscErrorCode ierr;
962*637a0070SStefano Zampini 
963*637a0070SStefano Zampini   PetscFunctionBegin;
964*637a0070SStefano Zampini   ierr = MatDenseCUDAResetArray(l->A);CHKERRQ(ierr);
965*637a0070SStefano Zampini   PetscFunctionReturn(0);
966*637a0070SStefano Zampini }
967*637a0070SStefano Zampini 
968*637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArrayWrite_MPIDenseCUDA(Mat A, PetscScalar **a)
969*637a0070SStefano Zampini {
970*637a0070SStefano Zampini   Mat_MPIDense   *l = (Mat_MPIDense*) A->data;
971*637a0070SStefano Zampini   PetscErrorCode ierr;
972*637a0070SStefano Zampini 
973*637a0070SStefano Zampini   PetscFunctionBegin;
974*637a0070SStefano Zampini   ierr = MatDenseCUDAGetArrayWrite(l->A,a);CHKERRQ(ierr);
975*637a0070SStefano Zampini   PetscFunctionReturn(0);
976*637a0070SStefano Zampini }
977*637a0070SStefano Zampini 
978*637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArrayWrite_MPIDenseCUDA(Mat A, PetscScalar **a)
979*637a0070SStefano Zampini {
980*637a0070SStefano Zampini   Mat_MPIDense   *l = (Mat_MPIDense*) A->data;
981*637a0070SStefano Zampini   PetscErrorCode ierr;
982*637a0070SStefano Zampini 
983*637a0070SStefano Zampini   PetscFunctionBegin;
984*637a0070SStefano Zampini   ierr = MatDenseCUDARestoreArrayWrite(l->A,a);CHKERRQ(ierr);
985*637a0070SStefano Zampini   PetscFunctionReturn(0);
986*637a0070SStefano Zampini }
987*637a0070SStefano Zampini 
988*637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArrayRead_MPIDenseCUDA(Mat A, const PetscScalar **a)
989*637a0070SStefano Zampini {
990*637a0070SStefano Zampini   Mat_MPIDense   *l = (Mat_MPIDense*) A->data;
991*637a0070SStefano Zampini   PetscErrorCode ierr;
992*637a0070SStefano Zampini 
993*637a0070SStefano Zampini   PetscFunctionBegin;
994*637a0070SStefano Zampini   ierr = MatDenseCUDAGetArrayRead(l->A,a);CHKERRQ(ierr);
995*637a0070SStefano Zampini   PetscFunctionReturn(0);
996*637a0070SStefano Zampini }
997*637a0070SStefano Zampini 
998*637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArrayRead_MPIDenseCUDA(Mat A, const PetscScalar **a)
999*637a0070SStefano Zampini {
1000*637a0070SStefano Zampini   Mat_MPIDense   *l = (Mat_MPIDense*) A->data;
1001*637a0070SStefano Zampini   PetscErrorCode ierr;
1002*637a0070SStefano Zampini 
1003*637a0070SStefano Zampini   PetscFunctionBegin;
1004*637a0070SStefano Zampini   ierr = MatDenseCUDARestoreArrayRead(l->A,a);CHKERRQ(ierr);
1005*637a0070SStefano Zampini   PetscFunctionReturn(0);
1006*637a0070SStefano Zampini }
1007*637a0070SStefano Zampini 
1008*637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArray_MPIDenseCUDA(Mat A, PetscScalar **a)
1009*637a0070SStefano Zampini {
1010*637a0070SStefano Zampini   Mat_MPIDense   *l = (Mat_MPIDense*) A->data;
1011*637a0070SStefano Zampini   PetscErrorCode ierr;
1012*637a0070SStefano Zampini 
1013*637a0070SStefano Zampini   PetscFunctionBegin;
1014*637a0070SStefano Zampini   ierr = MatDenseCUDAGetArray(l->A,a);CHKERRQ(ierr);
1015*637a0070SStefano Zampini   PetscFunctionReturn(0);
1016*637a0070SStefano Zampini }
1017*637a0070SStefano Zampini 
1018*637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArray_MPIDenseCUDA(Mat A, PetscScalar **a)
1019*637a0070SStefano Zampini {
1020*637a0070SStefano Zampini   Mat_MPIDense   *l = (Mat_MPIDense*) A->data;
1021*637a0070SStefano Zampini   PetscErrorCode ierr;
1022*637a0070SStefano Zampini 
1023*637a0070SStefano Zampini   PetscFunctionBegin;
1024*637a0070SStefano Zampini   ierr = MatDenseCUDARestoreArray(l->A,a);CHKERRQ(ierr);
1025*637a0070SStefano Zampini   PetscFunctionReturn(0);
1026*637a0070SStefano Zampini }
1027*637a0070SStefano Zampini 
1028*637a0070SStefano Zampini static PetscErrorCode MatBindToCPU_MPIDenseCUDA(Mat mat,PetscBool bind)
1029*637a0070SStefano Zampini {
1030*637a0070SStefano Zampini   Mat_MPIDense   *d = (Mat_MPIDense*)mat->data;
1031*637a0070SStefano Zampini   PetscErrorCode ierr;
1032*637a0070SStefano Zampini 
1033*637a0070SStefano Zampini   PetscFunctionBegin;
1034*637a0070SStefano Zampini   if (d->A) {
1035*637a0070SStefano Zampini     ierr = MatBindToCPU(d->A,bind);CHKERRQ(ierr);
1036*637a0070SStefano Zampini   }
1037*637a0070SStefano Zampini   mat->boundtocpu = bind;
1038*637a0070SStefano Zampini   PetscFunctionReturn(0);
1039*637a0070SStefano Zampini }
1040*637a0070SStefano Zampini 
1041*637a0070SStefano Zampini PetscErrorCode MatMPIDenseCUDASetPreallocation(Mat A, PetscScalar *d_data)
1042*637a0070SStefano Zampini {
1043*637a0070SStefano Zampini   Mat_MPIDense   *d = (Mat_MPIDense*)A->data;
1044*637a0070SStefano Zampini   PetscErrorCode ierr;
1045*637a0070SStefano Zampini   PetscBool      iscuda;
1046*637a0070SStefano Zampini 
1047*637a0070SStefano Zampini   PetscFunctionBegin;
1048*637a0070SStefano Zampini   ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIDENSECUDA,&iscuda);CHKERRQ(ierr);
1049*637a0070SStefano Zampini   if (!iscuda) PetscFunctionReturn(0);
1050*637a0070SStefano Zampini   ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr);
1051*637a0070SStefano Zampini   ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr);
1052*637a0070SStefano Zampini   if (!d->A) {
1053*637a0070SStefano Zampini     ierr = MatCreate(PETSC_COMM_SELF,&d->A);CHKERRQ(ierr);
1054*637a0070SStefano Zampini     ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)d->A);CHKERRQ(ierr);
1055*637a0070SStefano Zampini     ierr = MatSetSizes(d->A,A->rmap->n,A->cmap->N,A->rmap->n,A->cmap->N);CHKERRQ(ierr);
1056*637a0070SStefano Zampini   }
1057*637a0070SStefano Zampini   ierr = MatSetType(d->A,MATSEQDENSECUDA);CHKERRQ(ierr);
1058*637a0070SStefano Zampini   ierr = MatSeqDenseCUDASetPreallocation(d->A,d_data);CHKERRQ(ierr);
1059*637a0070SStefano Zampini   A->preallocated = PETSC_TRUE;
1060*637a0070SStefano Zampini   PetscFunctionReturn(0);
1061*637a0070SStefano Zampini }
1062*637a0070SStefano Zampini #endif
1063*637a0070SStefano Zampini 
106473a71a0fSBarry Smith static PetscErrorCode MatSetRandom_MPIDense(Mat x,PetscRandom rctx)
106573a71a0fSBarry Smith {
106673a71a0fSBarry Smith   Mat_MPIDense   *d = (Mat_MPIDense*)x->data;
106773a71a0fSBarry Smith   PetscErrorCode ierr;
106873a71a0fSBarry Smith 
106973a71a0fSBarry Smith   PetscFunctionBegin;
1070*637a0070SStefano Zampini   ierr = MatSetRandom(d->A,rctx);CHKERRQ(ierr);
107173a71a0fSBarry Smith   PetscFunctionReturn(0);
107273a71a0fSBarry Smith }
107373a71a0fSBarry Smith 
107452c5f739Sprj- PETSC_INTERN PetscErrorCode MatMatMultNumeric_MPIDense(Mat A,Mat,Mat);
1075fd4e9aacSBarry Smith 
10763b49f96aSBarry Smith static PetscErrorCode MatMissingDiagonal_MPIDense(Mat A,PetscBool  *missing,PetscInt *d)
10773b49f96aSBarry Smith {
10783b49f96aSBarry Smith   PetscFunctionBegin;
10793b49f96aSBarry Smith   *missing = PETSC_FALSE;
10803b49f96aSBarry Smith   PetscFunctionReturn(0);
10813b49f96aSBarry Smith }
10823b49f96aSBarry Smith 
10834222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat,Mat,PetscReal,Mat);
1084cc48ffa7SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat,Mat,Mat);
1085cc48ffa7SToby Isaac 
10868965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/
108709dc0095SBarry Smith static struct _MatOps MatOps_Values = { MatSetValues_MPIDense,
108809dc0095SBarry Smith                                         MatGetRow_MPIDense,
108909dc0095SBarry Smith                                         MatRestoreRow_MPIDense,
109009dc0095SBarry Smith                                         MatMult_MPIDense,
109197304618SKris Buschelman                                 /*  4*/ MatMultAdd_MPIDense,
10927c922b88SBarry Smith                                         MatMultTranspose_MPIDense,
10937c922b88SBarry Smith                                         MatMultTransposeAdd_MPIDense,
10948965ea79SLois Curfman McInnes                                         0,
109509dc0095SBarry Smith                                         0,
109609dc0095SBarry Smith                                         0,
109797304618SKris Buschelman                                 /* 10*/ 0,
109809dc0095SBarry Smith                                         0,
109909dc0095SBarry Smith                                         0,
110009dc0095SBarry Smith                                         0,
110109dc0095SBarry Smith                                         MatTranspose_MPIDense,
110297304618SKris Buschelman                                 /* 15*/ MatGetInfo_MPIDense,
11036e4ee0c6SHong Zhang                                         MatEqual_MPIDense,
110409dc0095SBarry Smith                                         MatGetDiagonal_MPIDense,
11055b2fa520SLois Curfman McInnes                                         MatDiagonalScale_MPIDense,
110609dc0095SBarry Smith                                         MatNorm_MPIDense,
110797304618SKris Buschelman                                 /* 20*/ MatAssemblyBegin_MPIDense,
110809dc0095SBarry Smith                                         MatAssemblyEnd_MPIDense,
110909dc0095SBarry Smith                                         MatSetOption_MPIDense,
111009dc0095SBarry Smith                                         MatZeroEntries_MPIDense,
1111d519adbfSMatthew Knepley                                 /* 24*/ MatZeroRows_MPIDense,
1112919b68f7SBarry Smith                                         0,
111301b82886SBarry Smith                                         0,
111401b82886SBarry Smith                                         0,
111501b82886SBarry Smith                                         0,
11164994cf47SJed Brown                                 /* 29*/ MatSetUp_MPIDense,
1117273d9f13SBarry Smith                                         0,
111809dc0095SBarry Smith                                         0,
1119c56a70eeSBarry Smith                                         MatGetDiagonalBlock_MPIDense,
11208c778c55SBarry Smith                                         0,
1121d519adbfSMatthew Knepley                                 /* 34*/ MatDuplicate_MPIDense,
112209dc0095SBarry Smith                                         0,
112309dc0095SBarry Smith                                         0,
112409dc0095SBarry Smith                                         0,
112509dc0095SBarry Smith                                         0,
1126d519adbfSMatthew Knepley                                 /* 39*/ MatAXPY_MPIDense,
11277dae84e0SHong Zhang                                         MatCreateSubMatrices_MPIDense,
112809dc0095SBarry Smith                                         0,
112909dc0095SBarry Smith                                         MatGetValues_MPIDense,
113009dc0095SBarry Smith                                         0,
1131d519adbfSMatthew Knepley                                 /* 44*/ 0,
113209dc0095SBarry Smith                                         MatScale_MPIDense,
11337d68702bSBarry Smith                                         MatShift_Basic,
113409dc0095SBarry Smith                                         0,
113509dc0095SBarry Smith                                         0,
113673a71a0fSBarry Smith                                 /* 49*/ MatSetRandom_MPIDense,
113709dc0095SBarry Smith                                         0,
113809dc0095SBarry Smith                                         0,
113909dc0095SBarry Smith                                         0,
114009dc0095SBarry Smith                                         0,
1141d519adbfSMatthew Knepley                                 /* 54*/ 0,
114209dc0095SBarry Smith                                         0,
114309dc0095SBarry Smith                                         0,
114409dc0095SBarry Smith                                         0,
114509dc0095SBarry Smith                                         0,
11467dae84e0SHong Zhang                                 /* 59*/ MatCreateSubMatrix_MPIDense,
1147b9b97703SBarry Smith                                         MatDestroy_MPIDense,
1148b9b97703SBarry Smith                                         MatView_MPIDense,
1149357abbc8SBarry Smith                                         0,
115097304618SKris Buschelman                                         0,
1151d519adbfSMatthew Knepley                                 /* 64*/ 0,
115297304618SKris Buschelman                                         0,
115397304618SKris Buschelman                                         0,
115497304618SKris Buschelman                                         0,
115597304618SKris Buschelman                                         0,
1156d519adbfSMatthew Knepley                                 /* 69*/ 0,
115797304618SKris Buschelman                                         0,
115897304618SKris Buschelman                                         0,
115997304618SKris Buschelman                                         0,
116097304618SKris Buschelman                                         0,
1161d519adbfSMatthew Knepley                                 /* 74*/ 0,
116297304618SKris Buschelman                                         0,
116397304618SKris Buschelman                                         0,
116497304618SKris Buschelman                                         0,
116597304618SKris Buschelman                                         0,
1166d519adbfSMatthew Knepley                                 /* 79*/ 0,
116797304618SKris Buschelman                                         0,
116897304618SKris Buschelman                                         0,
116997304618SKris Buschelman                                         0,
11705bba2384SShri Abhyankar                                 /* 83*/ MatLoad_MPIDense,
1171865e5f61SKris Buschelman                                         0,
1172865e5f61SKris Buschelman                                         0,
1173865e5f61SKris Buschelman                                         0,
1174865e5f61SKris Buschelman                                         0,
1175865e5f61SKris Buschelman                                         0,
11764222ddf1SHong Zhang                                 /* 89*/ 0,
11774222ddf1SHong Zhang                                         0,
1178fd4e9aacSBarry Smith                                         MatMatMultNumeric_MPIDense,
11792fbe02b9SBarry Smith                                         0,
1180ba337c44SJed Brown                                         0,
1181d519adbfSMatthew Knepley                                 /* 94*/ 0,
11824222ddf1SHong Zhang                                         0,
11834222ddf1SHong Zhang                                         0,
1184cc48ffa7SToby Isaac                                         MatMatTransposeMultNumeric_MPIDense_MPIDense,
1185ba337c44SJed Brown                                         0,
11864222ddf1SHong Zhang                                 /* 99*/ MatProductSetFromOptions_MPIDense,
1187ba337c44SJed Brown                                         0,
1188ba337c44SJed Brown                                         0,
1189ba337c44SJed Brown                                         MatConjugate_MPIDense,
1190ba337c44SJed Brown                                         0,
1191ba337c44SJed Brown                                 /*104*/ 0,
1192ba337c44SJed Brown                                         MatRealPart_MPIDense,
1193ba337c44SJed Brown                                         MatImaginaryPart_MPIDense,
119486d161a7SShri Abhyankar                                         0,
119586d161a7SShri Abhyankar                                         0,
119686d161a7SShri Abhyankar                                 /*109*/ 0,
119786d161a7SShri Abhyankar                                         0,
119886d161a7SShri Abhyankar                                         0,
119949a6ff4bSBarry Smith                                         MatGetColumnVector_MPIDense,
12003b49f96aSBarry Smith                                         MatMissingDiagonal_MPIDense,
120186d161a7SShri Abhyankar                                 /*114*/ 0,
120286d161a7SShri Abhyankar                                         0,
120386d161a7SShri Abhyankar                                         0,
120486d161a7SShri Abhyankar                                         0,
120586d161a7SShri Abhyankar                                         0,
120686d161a7SShri Abhyankar                                 /*119*/ 0,
120786d161a7SShri Abhyankar                                         0,
120886d161a7SShri Abhyankar                                         0,
12090716a85fSBarry Smith                                         0,
12100716a85fSBarry Smith                                         0,
12110716a85fSBarry Smith                                 /*124*/ 0,
12123964eb88SJed Brown                                         MatGetColumnNorms_MPIDense,
12133964eb88SJed Brown                                         0,
12143964eb88SJed Brown                                         0,
12153964eb88SJed Brown                                         0,
12163964eb88SJed Brown                                 /*129*/ 0,
12174222ddf1SHong Zhang                                         0,
12184222ddf1SHong Zhang                                         0,
1219cb20be35SHong Zhang                                         MatTransposeMatMultNumeric_MPIDense_MPIDense,
12203964eb88SJed Brown                                         0,
12213964eb88SJed Brown                                 /*134*/ 0,
12223964eb88SJed Brown                                         0,
12233964eb88SJed Brown                                         0,
12243964eb88SJed Brown                                         0,
12253964eb88SJed Brown                                         0,
12263964eb88SJed Brown                                 /*139*/ 0,
1227f9426fe0SMark Adams                                         0,
122894e2cb23SJakub Kruzik                                         0,
122994e2cb23SJakub Kruzik                                         0,
123094e2cb23SJakub Kruzik                                         0,
12314222ddf1SHong Zhang                                         MatCreateMPIMatConcatenateSeqMat_MPIDense,
12324222ddf1SHong Zhang                                 /*145*/ 0,
12334222ddf1SHong Zhang                                         0,
12344222ddf1SHong Zhang                                         0
1235ba337c44SJed Brown };
12368965ea79SLois Curfman McInnes 
12377087cfbeSBarry Smith PetscErrorCode  MatMPIDenseSetPreallocation_MPIDense(Mat mat,PetscScalar *data)
1238a23d5eceSKris Buschelman {
1239*637a0070SStefano Zampini   Mat_MPIDense   *a = (Mat_MPIDense*)mat->data;
1240*637a0070SStefano Zampini   PetscBool      iscuda;
1241dfbe8321SBarry Smith   PetscErrorCode ierr;
1242a23d5eceSKris Buschelman 
1243a23d5eceSKris Buschelman   PetscFunctionBegin;
124434ef9618SShri Abhyankar   ierr = PetscLayoutSetUp(mat->rmap);CHKERRQ(ierr);
124534ef9618SShri Abhyankar   ierr = PetscLayoutSetUp(mat->cmap);CHKERRQ(ierr);
1246*637a0070SStefano Zampini   if (!a->A) {
1247f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&a->A);CHKERRQ(ierr);
12483bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr);
1249*637a0070SStefano Zampini     ierr = MatSetSizes(a->A,mat->rmap->n,mat->cmap->N,mat->rmap->n,mat->cmap->N);CHKERRQ(ierr);
1250*637a0070SStefano Zampini   }
1251*637a0070SStefano Zampini   ierr = PetscObjectTypeCompare((PetscObject)mat,MATMPIDENSECUDA,&iscuda);CHKERRQ(ierr);
1252*637a0070SStefano Zampini   ierr = MatSetType(a->A,iscuda ? MATSEQDENSECUDA : MATSEQDENSE);CHKERRQ(ierr);
1253*637a0070SStefano Zampini   ierr = MatSeqDenseSetPreallocation(a->A,data);CHKERRQ(ierr);
1254*637a0070SStefano Zampini   mat->preallocated = PETSC_TRUE;
1255a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1256a23d5eceSKris Buschelman }
1257a23d5eceSKris Buschelman 
125865b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
1259cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIDense_Elemental(Mat A, MatType newtype,MatReuse reuse,Mat *newmat)
12608baccfbdSHong Zhang {
12618ea901baSHong Zhang   Mat            mat_elemental;
12628ea901baSHong Zhang   PetscErrorCode ierr;
126332d7a744SHong Zhang   PetscScalar    *v;
126432d7a744SHong Zhang   PetscInt       m=A->rmap->n,N=A->cmap->N,rstart=A->rmap->rstart,i,*rows,*cols;
12658ea901baSHong Zhang 
12668baccfbdSHong Zhang   PetscFunctionBegin;
1267378336b6SHong Zhang   if (reuse == MAT_REUSE_MATRIX) {
1268378336b6SHong Zhang     mat_elemental = *newmat;
1269378336b6SHong Zhang     ierr = MatZeroEntries(*newmat);CHKERRQ(ierr);
1270378336b6SHong Zhang   } else {
1271378336b6SHong Zhang     ierr = MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental);CHKERRQ(ierr);
1272378336b6SHong Zhang     ierr = MatSetSizes(mat_elemental,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
1273378336b6SHong Zhang     ierr = MatSetType(mat_elemental,MATELEMENTAL);CHKERRQ(ierr);
1274378336b6SHong Zhang     ierr = MatSetUp(mat_elemental);CHKERRQ(ierr);
127532d7a744SHong Zhang     ierr = MatSetOption(mat_elemental,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr);
1276378336b6SHong Zhang   }
1277378336b6SHong Zhang 
127832d7a744SHong Zhang   ierr = PetscMalloc2(m,&rows,N,&cols);CHKERRQ(ierr);
127932d7a744SHong Zhang   for (i=0; i<N; i++) cols[i] = i;
128032d7a744SHong Zhang   for (i=0; i<m; i++) rows[i] = rstart + i;
12818ea901baSHong Zhang 
1282*637a0070SStefano Zampini   /* PETSc-Elemental interface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */
128332d7a744SHong Zhang   ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr);
128432d7a744SHong Zhang   ierr = MatSetValues(mat_elemental,m,rows,N,cols,v,ADD_VALUES);CHKERRQ(ierr);
12858ea901baSHong Zhang   ierr = MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
12868ea901baSHong Zhang   ierr = MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
128732d7a744SHong Zhang   ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr);
128832d7a744SHong Zhang   ierr = PetscFree2(rows,cols);CHKERRQ(ierr);
12898ea901baSHong Zhang 
1290511c6705SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
129128be2f97SBarry Smith     ierr = MatHeaderReplace(A,&mat_elemental);CHKERRQ(ierr);
12928ea901baSHong Zhang   } else {
12938ea901baSHong Zhang     *newmat = mat_elemental;
12948ea901baSHong Zhang   }
12958baccfbdSHong Zhang   PetscFunctionReturn(0);
12968baccfbdSHong Zhang }
129765b80a83SHong Zhang #endif
12988baccfbdSHong Zhang 
1299af53bab2SHong Zhang static PetscErrorCode MatDenseGetColumn_MPIDense(Mat A,PetscInt col,PetscScalar **vals)
130086aefd0dSHong Zhang {
130186aefd0dSHong Zhang   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
130286aefd0dSHong Zhang   PetscErrorCode ierr;
130386aefd0dSHong Zhang 
130486aefd0dSHong Zhang   PetscFunctionBegin;
130586aefd0dSHong Zhang   ierr = MatDenseGetColumn(mat->A,col,vals);CHKERRQ(ierr);
130686aefd0dSHong Zhang   PetscFunctionReturn(0);
130786aefd0dSHong Zhang }
130886aefd0dSHong Zhang 
1309af53bab2SHong Zhang static PetscErrorCode MatDenseRestoreColumn_MPIDense(Mat A,PetscScalar **vals)
131086aefd0dSHong Zhang {
131186aefd0dSHong Zhang   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
131286aefd0dSHong Zhang   PetscErrorCode ierr;
131386aefd0dSHong Zhang 
131486aefd0dSHong Zhang   PetscFunctionBegin;
131586aefd0dSHong Zhang   ierr = MatDenseRestoreColumn(mat->A,vals);CHKERRQ(ierr);
131686aefd0dSHong Zhang   PetscFunctionReturn(0);
131786aefd0dSHong Zhang }
131886aefd0dSHong Zhang 
131994e2cb23SJakub Kruzik PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIDense(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat)
132094e2cb23SJakub Kruzik {
132194e2cb23SJakub Kruzik   PetscErrorCode ierr;
132294e2cb23SJakub Kruzik   Mat_MPIDense   *mat;
132394e2cb23SJakub Kruzik   PetscInt       m,nloc,N;
132494e2cb23SJakub Kruzik 
132594e2cb23SJakub Kruzik   PetscFunctionBegin;
132694e2cb23SJakub Kruzik   ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr);
132794e2cb23SJakub Kruzik   ierr = MatGetLocalSize(inmat,NULL,&nloc);CHKERRQ(ierr);
132894e2cb23SJakub Kruzik   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
132994e2cb23SJakub Kruzik     PetscInt sum;
133094e2cb23SJakub Kruzik 
133194e2cb23SJakub Kruzik     if (n == PETSC_DECIDE) {
133294e2cb23SJakub Kruzik       ierr = PetscSplitOwnership(comm,&n,&N);CHKERRQ(ierr);
133394e2cb23SJakub Kruzik     }
133494e2cb23SJakub Kruzik     /* Check sum(n) = N */
133594e2cb23SJakub Kruzik     ierr = MPIU_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr);
133694e2cb23SJakub Kruzik     if (sum != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns %D != global columns %D",sum,N);
133794e2cb23SJakub Kruzik 
133894e2cb23SJakub Kruzik     ierr = MatCreateDense(comm,m,n,PETSC_DETERMINE,N,NULL,outmat);CHKERRQ(ierr);
133994e2cb23SJakub Kruzik   }
134094e2cb23SJakub Kruzik 
134194e2cb23SJakub Kruzik   /* numeric phase */
134294e2cb23SJakub Kruzik   mat = (Mat_MPIDense*)(*outmat)->data;
134394e2cb23SJakub Kruzik   ierr = MatCopy(inmat,mat->A,SAME_NONZERO_PATTERN);CHKERRQ(ierr);
134494e2cb23SJakub Kruzik   ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
134594e2cb23SJakub Kruzik   ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
134694e2cb23SJakub Kruzik   PetscFunctionReturn(0);
134794e2cb23SJakub Kruzik }
134894e2cb23SJakub Kruzik 
1349*637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA)
1350*637a0070SStefano Zampini PetscErrorCode MatConvert_MPIDenseCUDA_MPIDense(Mat M,MatType type,MatReuse reuse,Mat *newmat)
1351*637a0070SStefano Zampini {
1352*637a0070SStefano Zampini   Mat            B;
1353*637a0070SStefano Zampini   Mat_MPIDense   *m;
1354*637a0070SStefano Zampini   PetscErrorCode ierr;
1355*637a0070SStefano Zampini 
1356*637a0070SStefano Zampini   PetscFunctionBegin;
1357*637a0070SStefano Zampini   if (reuse == MAT_INITIAL_MATRIX) {
1358*637a0070SStefano Zampini     ierr = MatDuplicate(M,MAT_COPY_VALUES,newmat);CHKERRQ(ierr);
1359*637a0070SStefano Zampini   } else if (reuse == MAT_REUSE_MATRIX) {
1360*637a0070SStefano Zampini     ierr = MatCopy(M,*newmat,SAME_NONZERO_PATTERN);CHKERRQ(ierr);
1361*637a0070SStefano Zampini   }
1362*637a0070SStefano Zampini 
1363*637a0070SStefano Zampini   B    = *newmat;
1364*637a0070SStefano Zampini   ierr = MatBindToCPU_MPIDenseCUDA(B,PETSC_TRUE);CHKERRQ(ierr);
1365*637a0070SStefano Zampini   ierr = PetscFree(B->defaultvectype);CHKERRQ(ierr);
1366*637a0070SStefano Zampini   ierr = PetscStrallocpy(VECSTANDARD,&B->defaultvectype);CHKERRQ(ierr);
1367*637a0070SStefano Zampini   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIDENSE);CHKERRQ(ierr);
1368*637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpidensecuda_mpidense_C",NULL);CHKERRQ(ierr);
1369*637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaij_mpidensecuda_C",NULL);CHKERRQ(ierr);
1370*637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaij_C",NULL);CHKERRQ(ierr);
1371*637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArray_C",NULL);CHKERRQ(ierr);
1372*637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayRead_C",NULL);CHKERRQ(ierr);
1373*637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayWrite_C",NULL);CHKERRQ(ierr);
1374*637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArray_C",NULL);CHKERRQ(ierr);
1375*637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayRead_C",NULL);CHKERRQ(ierr);
1376*637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayWrite_C",NULL);CHKERRQ(ierr);
1377*637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAPlaceArray_C",NULL);CHKERRQ(ierr);
1378*637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAResetArray_C",NULL);CHKERRQ(ierr);
1379*637a0070SStefano Zampini   m    = (Mat_MPIDense*)(B)->data;
1380*637a0070SStefano Zampini   if (m->A) {
1381*637a0070SStefano Zampini     ierr = MatConvert(m->A,MATSEQDENSE,MAT_INPLACE_MATRIX,&m->A);CHKERRQ(ierr);
1382*637a0070SStefano Zampini     ierr = MatSetUpMultiply_MPIDense(B);CHKERRQ(ierr);
1383*637a0070SStefano Zampini   }
1384*637a0070SStefano Zampini   B->ops->bindtocpu = NULL;
1385*637a0070SStefano Zampini   B->offloadmask    = PETSC_OFFLOAD_CPU;
1386*637a0070SStefano Zampini   PetscFunctionReturn(0);
1387*637a0070SStefano Zampini }
1388*637a0070SStefano Zampini 
1389*637a0070SStefano Zampini PetscErrorCode MatConvert_MPIDense_MPIDenseCUDA(Mat M,MatType type,MatReuse reuse,Mat *newmat)
1390*637a0070SStefano Zampini {
1391*637a0070SStefano Zampini   Mat            B;
1392*637a0070SStefano Zampini   Mat_MPIDense   *m;
1393*637a0070SStefano Zampini   PetscErrorCode ierr;
1394*637a0070SStefano Zampini 
1395*637a0070SStefano Zampini   PetscFunctionBegin;
1396*637a0070SStefano Zampini   if (reuse == MAT_INITIAL_MATRIX) {
1397*637a0070SStefano Zampini     ierr = MatDuplicate(M,MAT_COPY_VALUES,newmat);CHKERRQ(ierr);
1398*637a0070SStefano Zampini   } else if (reuse == MAT_REUSE_MATRIX) {
1399*637a0070SStefano Zampini     ierr = MatCopy(M,*newmat,SAME_NONZERO_PATTERN);CHKERRQ(ierr);
1400*637a0070SStefano Zampini   }
1401*637a0070SStefano Zampini 
1402*637a0070SStefano Zampini   B    = *newmat;
1403*637a0070SStefano Zampini   ierr = PetscFree(B->defaultvectype);CHKERRQ(ierr);
1404*637a0070SStefano Zampini   ierr = PetscStrallocpy(VECCUDA,&B->defaultvectype);CHKERRQ(ierr);
1405*637a0070SStefano Zampini   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIDENSECUDA);CHKERRQ(ierr);
1406*637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpidensecuda_mpidense_C",            MatConvert_MPIDenseCUDA_MPIDense);CHKERRQ(ierr);
1407*637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaij_mpidensecuda_C",MatProductSetFromOptions_MPIAIJ_MPIDense);CHKERRQ(ierr);
1408*637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaij_C",MatProductSetFromOptions_MPIDense_MPIAIJ);CHKERRQ(ierr);
1409*637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArray_C",                        MatDenseCUDAGetArray_MPIDenseCUDA);CHKERRQ(ierr);
1410*637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayRead_C",                    MatDenseCUDAGetArrayRead_MPIDenseCUDA);CHKERRQ(ierr);
1411*637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayWrite_C",                   MatDenseCUDAGetArrayWrite_MPIDenseCUDA);CHKERRQ(ierr);
1412*637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArray_C",                    MatDenseCUDARestoreArray_MPIDenseCUDA);CHKERRQ(ierr);
1413*637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayRead_C",                MatDenseCUDARestoreArrayRead_MPIDenseCUDA);CHKERRQ(ierr);
1414*637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayWrite_C",               MatDenseCUDARestoreArrayWrite_MPIDenseCUDA);CHKERRQ(ierr);
1415*637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAPlaceArray_C",                      MatDenseCUDAPlaceArray_MPIDenseCUDA);CHKERRQ(ierr);
1416*637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAResetArray_C",                      MatDenseCUDAResetArray_MPIDenseCUDA);CHKERRQ(ierr);
1417*637a0070SStefano Zampini   m    = (Mat_MPIDense*)(B)->data;
1418*637a0070SStefano Zampini   if (m->A) {
1419*637a0070SStefano Zampini     ierr = MatConvert(m->A,MATSEQDENSECUDA,MAT_INPLACE_MATRIX,&m->A);CHKERRQ(ierr);
1420*637a0070SStefano Zampini     ierr = MatSetUpMultiply_MPIDense(B);CHKERRQ(ierr);
1421*637a0070SStefano Zampini     B->offloadmask = PETSC_OFFLOAD_BOTH;
1422*637a0070SStefano Zampini   } else {
1423*637a0070SStefano Zampini     B->offloadmask = PETSC_OFFLOAD_UNALLOCATED;
1424*637a0070SStefano Zampini   }
1425*637a0070SStefano Zampini   ierr = MatBindToCPU_MPIDenseCUDA(B,PETSC_FALSE);CHKERRQ(ierr);
1426*637a0070SStefano Zampini 
1427*637a0070SStefano Zampini   B->ops->bindtocpu = MatBindToCPU_MPIDenseCUDA;
1428*637a0070SStefano Zampini   PetscFunctionReturn(0);
1429*637a0070SStefano Zampini }
1430*637a0070SStefano Zampini #endif
1431*637a0070SStefano Zampini 
14328cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIDense(Mat mat)
1433273d9f13SBarry Smith {
1434273d9f13SBarry Smith   Mat_MPIDense   *a;
1435dfbe8321SBarry Smith   PetscErrorCode ierr;
1436273d9f13SBarry Smith 
1437273d9f13SBarry Smith   PetscFunctionBegin;
1438b00a9115SJed Brown   ierr      = PetscNewLog(mat,&a);CHKERRQ(ierr);
1439b0a32e0cSBarry Smith   mat->data = (void*)a;
1440273d9f13SBarry Smith   ierr      = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1441273d9f13SBarry Smith 
1442273d9f13SBarry Smith   mat->insertmode = NOT_SET_VALUES;
1443ce94432eSBarry Smith   ierr            = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&a->rank);CHKERRQ(ierr);
1444ce94432eSBarry Smith   ierr            = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&a->size);CHKERRQ(ierr);
1445273d9f13SBarry Smith 
1446273d9f13SBarry Smith   /* build cache for off array entries formed */
1447273d9f13SBarry Smith   a->donotstash = PETSC_FALSE;
14482205254eSKarl Rupp 
1449ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)mat),1,&mat->stash);CHKERRQ(ierr);
1450273d9f13SBarry Smith 
1451273d9f13SBarry Smith   /* stuff used for matrix vector multiply */
1452273d9f13SBarry Smith   a->lvec        = 0;
1453273d9f13SBarry Smith   a->Mvctx       = 0;
1454273d9f13SBarry Smith   a->roworiented = PETSC_TRUE;
1455273d9f13SBarry Smith 
145649a6ff4bSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",MatDenseGetLDA_MPIDense);CHKERRQ(ierr);
1457bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",MatDenseGetArray_MPIDense);CHKERRQ(ierr);
14588572280aSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",MatDenseRestoreArray_MPIDense);CHKERRQ(ierr);
14598572280aSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",MatDenseGetArrayRead_MPIDense);CHKERRQ(ierr);
14608572280aSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",MatDenseRestoreArrayRead_MPIDense);CHKERRQ(ierr);
1461d3042a70SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",MatDensePlaceArray_MPIDense);CHKERRQ(ierr);
1462d3042a70SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",MatDenseResetArray_MPIDense);CHKERRQ(ierr);
14638baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
14648baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",MatConvert_MPIDense_Elemental);CHKERRQ(ierr);
14658baccfbdSHong Zhang #endif
1466*637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA)
1467*637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_mpidensecuda_C",MatConvert_MPIDense_MPIDenseCUDA);CHKERRQ(ierr);
1468*637a0070SStefano Zampini #endif
1469bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",MatMPIDenseSetPreallocation_MPIDense);CHKERRQ(ierr);
14704222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaij_mpidense_C",MatProductSetFromOptions_MPIAIJ_MPIDense);CHKERRQ(ierr);
14714222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaij_C",MatProductSetFromOptions_MPIDense_MPIAIJ);CHKERRQ(ierr);
1472bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C",MatMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr);
1473bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C",MatMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr);
147452c5f739Sprj-   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_nest_mpidense_C",MatMatMultSymbolic_Nest_Dense);CHKERRQ(ierr);
147552c5f739Sprj-   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_nest_mpidense_C",MatMatMultNumeric_Nest_Dense);CHKERRQ(ierr);
14768949adfdSHong Zhang 
14778949adfdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultSymbolic_mpiaij_mpidense_C",MatTransposeMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr);
14788949adfdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultNumeric_mpiaij_mpidense_C",MatTransposeMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr);
1479af53bab2SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",MatDenseGetColumn_MPIDense);CHKERRQ(ierr);
1480af53bab2SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",MatDenseRestoreColumn_MPIDense);CHKERRQ(ierr);
148138aed534SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)mat,MATMPIDENSE);CHKERRQ(ierr);
1482273d9f13SBarry Smith   PetscFunctionReturn(0);
1483273d9f13SBarry Smith }
1484273d9f13SBarry Smith 
1485209238afSKris Buschelman /*MC
1486*637a0070SStefano Zampini    MATMPIDENSECUDA - MATMPIDENSECUDA = "mpidensecuda" - A matrix type to be used for distributed dense matrices on GPUs.
1487*637a0070SStefano Zampini 
1488*637a0070SStefano Zampini    Options Database Keys:
1489*637a0070SStefano Zampini . -mat_type mpidensecuda - sets the matrix type to "mpidensecuda" during a call to MatSetFromOptions()
1490*637a0070SStefano Zampini 
1491*637a0070SStefano Zampini   Level: beginner
1492*637a0070SStefano Zampini 
1493*637a0070SStefano Zampini .seealso:
1494*637a0070SStefano Zampini 
1495*637a0070SStefano Zampini M*/
1496*637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA)
1497*637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreate_MPIDenseCUDA(Mat B)
1498*637a0070SStefano Zampini {
1499*637a0070SStefano Zampini   PetscErrorCode ierr;
1500*637a0070SStefano Zampini 
1501*637a0070SStefano Zampini   PetscFunctionBegin;
1502*637a0070SStefano Zampini   ierr = MatCreate_MPIDense(B);CHKERRQ(ierr);
1503*637a0070SStefano Zampini   ierr = MatConvert_MPIDense_MPIDenseCUDA(B,MATMPIDENSECUDA,MAT_INPLACE_MATRIX,&B);CHKERRQ(ierr);
1504*637a0070SStefano Zampini   PetscFunctionReturn(0);
1505*637a0070SStefano Zampini }
1506*637a0070SStefano Zampini #endif
1507*637a0070SStefano Zampini 
1508*637a0070SStefano Zampini /*MC
1509002d173eSKris Buschelman    MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices.
1510209238afSKris Buschelman 
1511209238afSKris Buschelman    This matrix type is identical to MATSEQDENSE when constructed with a single process communicator,
1512209238afSKris Buschelman    and MATMPIDENSE otherwise.
1513209238afSKris Buschelman 
1514209238afSKris Buschelman    Options Database Keys:
1515209238afSKris Buschelman . -mat_type dense - sets the matrix type to "dense" during a call to MatSetFromOptions()
1516209238afSKris Buschelman 
1517209238afSKris Buschelman   Level: beginner
1518209238afSKris Buschelman 
151901b82886SBarry Smith 
152052c5f739Sprj- .seealso: MATSEQDENSE,MATMPIDENSE
1521209238afSKris Buschelman M*/
1522209238afSKris Buschelman 
1523273d9f13SBarry Smith /*@C
1524273d9f13SBarry Smith    MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries
1525273d9f13SBarry Smith 
1526273d9f13SBarry Smith    Not collective
1527273d9f13SBarry Smith 
1528273d9f13SBarry Smith    Input Parameters:
15291c4f3114SJed Brown .  B - the matrix
15300298fd71SBarry Smith -  data - optional location of matrix data.  Set data=NULL for PETSc
1531273d9f13SBarry Smith    to control all matrix memory allocation.
1532273d9f13SBarry Smith 
1533273d9f13SBarry Smith    Notes:
1534273d9f13SBarry Smith    The dense format is fully compatible with standard Fortran 77
1535273d9f13SBarry Smith    storage by columns.
1536273d9f13SBarry Smith 
1537273d9f13SBarry Smith    The data input variable is intended primarily for Fortran programmers
1538273d9f13SBarry Smith    who wish to allocate their own matrix memory space.  Most users should
15390298fd71SBarry Smith    set data=NULL.
1540273d9f13SBarry Smith 
1541273d9f13SBarry Smith    Level: intermediate
1542273d9f13SBarry Smith 
1543273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues()
1544273d9f13SBarry Smith @*/
15451c4f3114SJed Brown PetscErrorCode  MatMPIDenseSetPreallocation(Mat B,PetscScalar *data)
1546273d9f13SBarry Smith {
15474ac538c5SBarry Smith   PetscErrorCode ierr;
1548273d9f13SBarry Smith 
1549273d9f13SBarry Smith   PetscFunctionBegin;
15501c4f3114SJed Brown   ierr = PetscTryMethod(B,"MatMPIDenseSetPreallocation_C",(Mat,PetscScalar*),(B,data));CHKERRQ(ierr);
1551273d9f13SBarry Smith   PetscFunctionReturn(0);
1552273d9f13SBarry Smith }
1553273d9f13SBarry Smith 
1554d3042a70SBarry Smith /*@
1555*637a0070SStefano Zampini    MatDensePlaceArray - Allows one to replace the array in a dense matrix with an
1556d3042a70SBarry Smith    array provided by the user. This is useful to avoid copying an array
1557d3042a70SBarry Smith    into a matrix
1558d3042a70SBarry Smith 
1559d3042a70SBarry Smith    Not Collective
1560d3042a70SBarry Smith 
1561d3042a70SBarry Smith    Input Parameters:
1562d3042a70SBarry Smith +  mat - the matrix
1563d3042a70SBarry Smith -  array - the array in column major order
1564d3042a70SBarry Smith 
1565d3042a70SBarry Smith    Notes:
1566d3042a70SBarry Smith    You can return to the original array with a call to MatDenseResetArray(). The user is responsible for freeing this array; it will not be
1567d3042a70SBarry Smith    freed when the matrix is destroyed.
1568d3042a70SBarry Smith 
1569d3042a70SBarry Smith    Level: developer
1570d3042a70SBarry Smith 
1571d3042a70SBarry Smith .seealso: MatDenseGetArray(), MatDenseResetArray(), VecPlaceArray(), VecGetArray(), VecRestoreArray(), VecReplaceArray(), VecResetArray()
1572d3042a70SBarry Smith 
1573d3042a70SBarry Smith @*/
1574*637a0070SStefano Zampini PetscErrorCode  MatDensePlaceArray(Mat mat,const PetscScalar *array)
1575d3042a70SBarry Smith {
1576d3042a70SBarry Smith   PetscErrorCode ierr;
1577*637a0070SStefano Zampini 
1578d3042a70SBarry Smith   PetscFunctionBegin;
1579d3042a70SBarry Smith   ierr = PetscUseMethod(mat,"MatDensePlaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr);
1580d3042a70SBarry Smith   ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr);
1581*637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA)
1582*637a0070SStefano Zampini   mat->offloadmask = PETSC_OFFLOAD_CPU;
1583*637a0070SStefano Zampini #endif
1584d3042a70SBarry Smith   PetscFunctionReturn(0);
1585d3042a70SBarry Smith }
1586d3042a70SBarry Smith 
1587d3042a70SBarry Smith /*@
1588d3042a70SBarry Smith    MatDenseResetArray - Resets the matrix array to that it previously had before the call to MatDensePlaceArray()
1589d3042a70SBarry Smith 
1590d3042a70SBarry Smith    Not Collective
1591d3042a70SBarry Smith 
1592d3042a70SBarry Smith    Input Parameters:
1593d3042a70SBarry Smith .  mat - the matrix
1594d3042a70SBarry Smith 
1595d3042a70SBarry Smith    Notes:
1596d3042a70SBarry Smith    You can only call this after a call to MatDensePlaceArray()
1597d3042a70SBarry Smith 
1598d3042a70SBarry Smith    Level: developer
1599d3042a70SBarry Smith 
1600d3042a70SBarry Smith .seealso: MatDenseGetArray(), MatDensePlaceArray(), VecPlaceArray(), VecGetArray(), VecRestoreArray(), VecReplaceArray(), VecResetArray()
1601d3042a70SBarry Smith 
1602d3042a70SBarry Smith @*/
1603d3042a70SBarry Smith PetscErrorCode  MatDenseResetArray(Mat mat)
1604d3042a70SBarry Smith {
1605d3042a70SBarry Smith   PetscErrorCode ierr;
1606*637a0070SStefano Zampini 
1607d3042a70SBarry Smith   PetscFunctionBegin;
1608d3042a70SBarry Smith   ierr = PetscUseMethod(mat,"MatDenseResetArray_C",(Mat),(mat));CHKERRQ(ierr);
1609d3042a70SBarry Smith   ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr);
1610d3042a70SBarry Smith   PetscFunctionReturn(0);
1611d3042a70SBarry Smith }
1612d3042a70SBarry Smith 
1613*637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA)
16148965ea79SLois Curfman McInnes /*@C
1615*637a0070SStefano Zampini    MatDenseCUDAPlaceArray - Allows one to replace the GPU array in a dense matrix with an
1616*637a0070SStefano Zampini    array provided by the user. This is useful to avoid copying an array
1617*637a0070SStefano Zampini    into a matrix
1618*637a0070SStefano Zampini 
1619*637a0070SStefano Zampini    Not Collective
1620*637a0070SStefano Zampini 
1621*637a0070SStefano Zampini    Input Parameters:
1622*637a0070SStefano Zampini +  mat - the matrix
1623*637a0070SStefano Zampini -  array - the array in column major order
1624*637a0070SStefano Zampini 
1625*637a0070SStefano Zampini    Notes:
1626*637a0070SStefano Zampini    You can return to the original array with a call to MatDenseCUDAResetArray(). The user is responsible for freeing this array; it will not be
1627*637a0070SStefano Zampini    freed when the matrix is destroyed. The array must have been allocated with cudaMalloc().
1628*637a0070SStefano Zampini 
1629*637a0070SStefano Zampini    Level: developer
1630*637a0070SStefano Zampini 
1631*637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDAResetArray()
1632*637a0070SStefano Zampini @*/
1633*637a0070SStefano Zampini PetscErrorCode  MatDenseCUDAPlaceArray(Mat mat,const PetscScalar *array)
1634*637a0070SStefano Zampini {
1635*637a0070SStefano Zampini   PetscErrorCode ierr;
1636*637a0070SStefano Zampini 
1637*637a0070SStefano Zampini   PetscFunctionBegin;
1638*637a0070SStefano Zampini   ierr = PetscUseMethod(mat,"MatDenseCUDAPlaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr);
1639*637a0070SStefano Zampini   ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr);
1640*637a0070SStefano Zampini   mat->offloadmask = PETSC_OFFLOAD_GPU;
1641*637a0070SStefano Zampini   PetscFunctionReturn(0);
1642*637a0070SStefano Zampini }
1643*637a0070SStefano Zampini 
1644*637a0070SStefano Zampini /*@C
1645*637a0070SStefano Zampini    MatDenseCUDAResetArray - Resets the matrix array to that it previously had before the call to MatDenseCUDAPlaceArray()
1646*637a0070SStefano Zampini 
1647*637a0070SStefano Zampini    Not Collective
1648*637a0070SStefano Zampini 
1649*637a0070SStefano Zampini    Input Parameters:
1650*637a0070SStefano Zampini .  mat - the matrix
1651*637a0070SStefano Zampini 
1652*637a0070SStefano Zampini    Notes:
1653*637a0070SStefano Zampini    You can only call this after a call to MatDenseCUDAPlaceArray()
1654*637a0070SStefano Zampini 
1655*637a0070SStefano Zampini    Level: developer
1656*637a0070SStefano Zampini 
1657*637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDAPlaceArray()
1658*637a0070SStefano Zampini 
1659*637a0070SStefano Zampini @*/
1660*637a0070SStefano Zampini PetscErrorCode  MatDenseCUDAResetArray(Mat mat)
1661*637a0070SStefano Zampini {
1662*637a0070SStefano Zampini   PetscErrorCode ierr;
1663*637a0070SStefano Zampini 
1664*637a0070SStefano Zampini   PetscFunctionBegin;
1665*637a0070SStefano Zampini   ierr = PetscUseMethod(mat,"MatDenseCUDAResetArray_C",(Mat),(mat));CHKERRQ(ierr);
1666*637a0070SStefano Zampini   ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr);
1667*637a0070SStefano Zampini   PetscFunctionReturn(0);
1668*637a0070SStefano Zampini }
1669*637a0070SStefano Zampini 
1670*637a0070SStefano Zampini /*@C
1671*637a0070SStefano Zampini    MatDenseCUDAGetArrayWrite - Provides write access to the CUDA buffer inside a dense matrix.
1672*637a0070SStefano Zampini 
1673*637a0070SStefano Zampini    Not Collective
1674*637a0070SStefano Zampini 
1675*637a0070SStefano Zampini    Input Parameters:
1676*637a0070SStefano Zampini .  A - the matrix
1677*637a0070SStefano Zampini 
1678*637a0070SStefano Zampini    Output Parameters
1679*637a0070SStefano Zampini .  array - the GPU array in column major order
1680*637a0070SStefano Zampini 
1681*637a0070SStefano Zampini    Notes:
1682*637a0070SStefano Zampini    The data on the GPU may not be updated due to operations done on the CPU. If you need updated data, use MatDenseCUDAGetArray(). The array must be restored with MatDenseCUDARestoreArrayWrite() when no longer needed.
1683*637a0070SStefano Zampini 
1684*637a0070SStefano Zampini    Level: developer
1685*637a0070SStefano Zampini 
1686*637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayRead(), MatDenseCUDARestoreArrayRead()
1687*637a0070SStefano Zampini @*/
1688*637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArrayWrite(Mat A, PetscScalar **a)
1689*637a0070SStefano Zampini {
1690*637a0070SStefano Zampini   PetscErrorCode ierr;
1691*637a0070SStefano Zampini 
1692*637a0070SStefano Zampini   PetscFunctionBegin;
1693*637a0070SStefano Zampini   ierr = PetscUseMethod(A,"MatDenseCUDAGetArrayWrite_C",(Mat,PetscScalar**),(A,a));CHKERRQ(ierr);
1694*637a0070SStefano Zampini   ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr);
1695*637a0070SStefano Zampini   PetscFunctionReturn(0);
1696*637a0070SStefano Zampini }
1697*637a0070SStefano Zampini 
1698*637a0070SStefano Zampini /*@C
1699*637a0070SStefano Zampini    MatDenseCUDARestoreArrayWrite - Restore write access to the CUDA buffer inside a dense matrix previously obtained with MatDenseCUDAGetArrayWrite().
1700*637a0070SStefano Zampini 
1701*637a0070SStefano Zampini    Not Collective
1702*637a0070SStefano Zampini 
1703*637a0070SStefano Zampini    Input Parameters:
1704*637a0070SStefano Zampini +  A - the matrix
1705*637a0070SStefano Zampini -  array - the GPU array in column major order
1706*637a0070SStefano Zampini 
1707*637a0070SStefano Zampini    Notes:
1708*637a0070SStefano Zampini 
1709*637a0070SStefano Zampini    Level: developer
1710*637a0070SStefano Zampini 
1711*637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead(), MatDenseCUDAGetArrayRead()
1712*637a0070SStefano Zampini @*/
1713*637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArrayWrite(Mat A, PetscScalar **a)
1714*637a0070SStefano Zampini {
1715*637a0070SStefano Zampini   PetscErrorCode ierr;
1716*637a0070SStefano Zampini 
1717*637a0070SStefano Zampini   PetscFunctionBegin;
1718*637a0070SStefano Zampini   ierr = PetscUseMethod(A,"MatDenseCUDARestoreArrayWrite_C",(Mat,PetscScalar**),(A,a));CHKERRQ(ierr);
1719*637a0070SStefano Zampini   ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr);
1720*637a0070SStefano Zampini   A->offloadmask = PETSC_OFFLOAD_GPU;
1721*637a0070SStefano Zampini   PetscFunctionReturn(0);
1722*637a0070SStefano Zampini }
1723*637a0070SStefano Zampini 
1724*637a0070SStefano Zampini /*@C
1725*637a0070SStefano Zampini    MatDenseCUDAGetArrayRead - Provides read-only access to the CUDA buffer inside a dense matrix. The array must be restored with MatDenseCUDARestoreArrayRead() when no longer needed.
1726*637a0070SStefano Zampini 
1727*637a0070SStefano Zampini    Not Collective
1728*637a0070SStefano Zampini 
1729*637a0070SStefano Zampini    Input Parameters:
1730*637a0070SStefano Zampini .  A - the matrix
1731*637a0070SStefano Zampini 
1732*637a0070SStefano Zampini    Output Parameters
1733*637a0070SStefano Zampini .  array - the GPU array in column major order
1734*637a0070SStefano Zampini 
1735*637a0070SStefano Zampini    Notes:
1736*637a0070SStefano Zampini    Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite().
1737*637a0070SStefano Zampini 
1738*637a0070SStefano Zampini    Level: developer
1739*637a0070SStefano Zampini 
1740*637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead()
1741*637a0070SStefano Zampini @*/
1742*637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArrayRead(Mat A, const PetscScalar **a)
1743*637a0070SStefano Zampini {
1744*637a0070SStefano Zampini   PetscErrorCode ierr;
1745*637a0070SStefano Zampini 
1746*637a0070SStefano Zampini   PetscFunctionBegin;
1747*637a0070SStefano Zampini   ierr = PetscUseMethod(A,"MatDenseCUDAGetArrayRead_C",(Mat,const PetscScalar**),(A,a));CHKERRQ(ierr);
1748*637a0070SStefano Zampini   PetscFunctionReturn(0);
1749*637a0070SStefano Zampini }
1750*637a0070SStefano Zampini 
1751*637a0070SStefano Zampini /*@C
1752*637a0070SStefano Zampini    MatDenseCUDARestoreArrayRead - Restore read-only access to the CUDA buffer inside a dense matrix previously obtained with a call to MatDenseCUDAGetArrayRead().
1753*637a0070SStefano Zampini 
1754*637a0070SStefano Zampini    Not Collective
1755*637a0070SStefano Zampini 
1756*637a0070SStefano Zampini    Input Parameters:
1757*637a0070SStefano Zampini +  A - the matrix
1758*637a0070SStefano Zampini -  array - the GPU array in column major order
1759*637a0070SStefano Zampini 
1760*637a0070SStefano Zampini    Notes:
1761*637a0070SStefano Zampini    Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite().
1762*637a0070SStefano Zampini 
1763*637a0070SStefano Zampini    Level: developer
1764*637a0070SStefano Zampini 
1765*637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDAGetArrayRead()
1766*637a0070SStefano Zampini @*/
1767*637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArrayRead(Mat A, const PetscScalar **a)
1768*637a0070SStefano Zampini {
1769*637a0070SStefano Zampini   PetscErrorCode ierr;
1770*637a0070SStefano Zampini 
1771*637a0070SStefano Zampini   PetscFunctionBegin;
1772*637a0070SStefano Zampini   ierr = PetscUseMethod(A,"MatDenseCUDARestoreArrayRead_C",(Mat,const PetscScalar**),(A,a));CHKERRQ(ierr);
1773*637a0070SStefano Zampini   PetscFunctionReturn(0);
1774*637a0070SStefano Zampini }
1775*637a0070SStefano Zampini 
1776*637a0070SStefano Zampini /*@C
1777*637a0070SStefano Zampini    MatDenseCUDAGetArray - Provides access to the CUDA buffer inside a dense matrix. The array must be restored with MatDenseCUDARestoreArray() when no longer needed.
1778*637a0070SStefano Zampini 
1779*637a0070SStefano Zampini    Not Collective
1780*637a0070SStefano Zampini 
1781*637a0070SStefano Zampini    Input Parameters:
1782*637a0070SStefano Zampini .  A - the matrix
1783*637a0070SStefano Zampini 
1784*637a0070SStefano Zampini    Output Parameters
1785*637a0070SStefano Zampini .  array - the GPU array in column major order
1786*637a0070SStefano Zampini 
1787*637a0070SStefano Zampini    Notes:
1788*637a0070SStefano Zampini    Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). For read-only access, use MatDenseCUDAGetArrayRead().
1789*637a0070SStefano Zampini 
1790*637a0070SStefano Zampini    Level: developer
1791*637a0070SStefano Zampini 
1792*637a0070SStefano Zampini .seealso: MatDenseCUDAGetArrayRead(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead()
1793*637a0070SStefano Zampini @*/
1794*637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArray(Mat A, PetscScalar **a)
1795*637a0070SStefano Zampini {
1796*637a0070SStefano Zampini   PetscErrorCode ierr;
1797*637a0070SStefano Zampini 
1798*637a0070SStefano Zampini   PetscFunctionBegin;
1799*637a0070SStefano Zampini   ierr = PetscUseMethod(A,"MatDenseCUDAGetArray_C",(Mat,PetscScalar**),(A,a));CHKERRQ(ierr);
1800*637a0070SStefano Zampini   ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr);
1801*637a0070SStefano Zampini   PetscFunctionReturn(0);
1802*637a0070SStefano Zampini }
1803*637a0070SStefano Zampini 
1804*637a0070SStefano Zampini /*@C
1805*637a0070SStefano Zampini    MatDenseCUDARestoreArray - Restore access to the CUDA buffer inside a dense matrix previously obtained with MatDenseCUDAGetArray().
1806*637a0070SStefano Zampini 
1807*637a0070SStefano Zampini    Not Collective
1808*637a0070SStefano Zampini 
1809*637a0070SStefano Zampini    Input Parameters:
1810*637a0070SStefano Zampini +  A - the matrix
1811*637a0070SStefano Zampini -  array - the GPU array in column major order
1812*637a0070SStefano Zampini 
1813*637a0070SStefano Zampini    Notes:
1814*637a0070SStefano Zampini 
1815*637a0070SStefano Zampini    Level: developer
1816*637a0070SStefano Zampini 
1817*637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead(), MatDenseCUDAGetArrayRead()
1818*637a0070SStefano Zampini @*/
1819*637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArray(Mat A, PetscScalar **a)
1820*637a0070SStefano Zampini {
1821*637a0070SStefano Zampini   PetscErrorCode ierr;
1822*637a0070SStefano Zampini 
1823*637a0070SStefano Zampini   PetscFunctionBegin;
1824*637a0070SStefano Zampini   ierr = PetscUseMethod(A,"MatDenseCUDARestoreArray_C",(Mat,PetscScalar**),(A,a));CHKERRQ(ierr);
1825*637a0070SStefano Zampini   ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr);
1826*637a0070SStefano Zampini   A->offloadmask = PETSC_OFFLOAD_GPU;
1827*637a0070SStefano Zampini   PetscFunctionReturn(0);
1828*637a0070SStefano Zampini }
1829*637a0070SStefano Zampini #endif
1830*637a0070SStefano Zampini 
1831*637a0070SStefano Zampini /*@C
1832*637a0070SStefano Zampini    MatCreateDense - Creates a matrix in dense format.
18338965ea79SLois Curfman McInnes 
1834d083f849SBarry Smith    Collective
1835db81eaa0SLois Curfman McInnes 
18368965ea79SLois Curfman McInnes    Input Parameters:
1837db81eaa0SLois Curfman McInnes +  comm - MPI communicator
18388965ea79SLois Curfman McInnes .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1839db81eaa0SLois Curfman McInnes .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
18408965ea79SLois Curfman McInnes .  M - number of global rows (or PETSC_DECIDE to have calculated if m is given)
1841db81eaa0SLois Curfman McInnes .  N - number of global columns (or PETSC_DECIDE to have calculated if n is given)
18426cfe35ddSJose E. Roman -  data - optional location of matrix data.  Set data=NULL (PETSC_NULL_SCALAR for Fortran users) for PETSc
1843dfc5480cSLois Curfman McInnes    to control all matrix memory allocation.
18448965ea79SLois Curfman McInnes 
18458965ea79SLois Curfman McInnes    Output Parameter:
1846477f1c0bSLois Curfman McInnes .  A - the matrix
18478965ea79SLois Curfman McInnes 
1848b259b22eSLois Curfman McInnes    Notes:
184939ddd567SLois Curfman McInnes    The dense format is fully compatible with standard Fortran 77
185039ddd567SLois Curfman McInnes    storage by columns.
18518965ea79SLois Curfman McInnes 
185218f449edSLois Curfman McInnes    The data input variable is intended primarily for Fortran programmers
185318f449edSLois Curfman McInnes    who wish to allocate their own matrix memory space.  Most users should
18546cfe35ddSJose E. Roman    set data=NULL (PETSC_NULL_SCALAR for Fortran users).
185518f449edSLois Curfman McInnes 
18568965ea79SLois Curfman McInnes    The user MUST specify either the local or global matrix dimensions
18578965ea79SLois Curfman McInnes    (possibly both).
18588965ea79SLois Curfman McInnes 
1859027ccd11SLois Curfman McInnes    Level: intermediate
1860027ccd11SLois Curfman McInnes 
186139ddd567SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues()
18628965ea79SLois Curfman McInnes @*/
186369b1f4b7SBarry Smith PetscErrorCode  MatCreateDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A)
18648965ea79SLois Curfman McInnes {
18656849ba73SBarry Smith   PetscErrorCode ierr;
186613f74950SBarry Smith   PetscMPIInt    size;
18678965ea79SLois Curfman McInnes 
18683a40ed3dSBarry Smith   PetscFunctionBegin;
1869f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
18708491ab44SLisandro Dalcin   PetscValidLogicalCollectiveBool(*A,!!data,6);
1871f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
1872273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
1873273d9f13SBarry Smith   if (size > 1) {
1874273d9f13SBarry Smith     ierr = MatSetType(*A,MATMPIDENSE);CHKERRQ(ierr);
1875273d9f13SBarry Smith     ierr = MatMPIDenseSetPreallocation(*A,data);CHKERRQ(ierr);
18766cfe35ddSJose E. Roman     if (data) {  /* user provided data array, so no need to assemble */
18776cfe35ddSJose E. Roman       ierr = MatSetUpMultiply_MPIDense(*A);CHKERRQ(ierr);
18786cfe35ddSJose E. Roman       (*A)->assembled = PETSC_TRUE;
18796cfe35ddSJose E. Roman     }
1880273d9f13SBarry Smith   } else {
1881273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr);
1882273d9f13SBarry Smith     ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr);
18838c469469SLois Curfman McInnes   }
18843a40ed3dSBarry Smith   PetscFunctionReturn(0);
18858965ea79SLois Curfman McInnes }
18868965ea79SLois Curfman McInnes 
1887*637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA)
1888*637a0070SStefano Zampini /*@C
1889*637a0070SStefano Zampini    MatCreateDenseCUDA - Creates a matrix in dense format using CUDA.
1890*637a0070SStefano Zampini 
1891*637a0070SStefano Zampini    Collective
1892*637a0070SStefano Zampini 
1893*637a0070SStefano Zampini    Input Parameters:
1894*637a0070SStefano Zampini +  comm - MPI communicator
1895*637a0070SStefano Zampini .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1896*637a0070SStefano Zampini .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
1897*637a0070SStefano Zampini .  M - number of global rows (or PETSC_DECIDE to have calculated if m is given)
1898*637a0070SStefano Zampini .  N - number of global columns (or PETSC_DECIDE to have calculated if n is given)
1899*637a0070SStefano Zampini -  data - optional location of GPU matrix data.  Set data=NULL for PETSc
1900*637a0070SStefano Zampini    to control matrix memory allocation.
1901*637a0070SStefano Zampini 
1902*637a0070SStefano Zampini    Output Parameter:
1903*637a0070SStefano Zampini .  A - the matrix
1904*637a0070SStefano Zampini 
1905*637a0070SStefano Zampini    Notes:
1906*637a0070SStefano Zampini 
1907*637a0070SStefano Zampini    Level: intermediate
1908*637a0070SStefano Zampini 
1909*637a0070SStefano Zampini .seealso: MatCreate(), MatCreateDense()
1910*637a0070SStefano Zampini @*/
1911*637a0070SStefano Zampini PetscErrorCode  MatCreateDenseCUDA(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A)
1912*637a0070SStefano Zampini {
1913*637a0070SStefano Zampini   PetscErrorCode ierr;
1914*637a0070SStefano Zampini   PetscMPIInt    size;
1915*637a0070SStefano Zampini 
1916*637a0070SStefano Zampini   PetscFunctionBegin;
1917*637a0070SStefano Zampini   ierr = MatCreate(comm,A);CHKERRQ(ierr);
1918*637a0070SStefano Zampini   PetscValidLogicalCollectiveBool(*A,!!data,6);
1919*637a0070SStefano Zampini   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
1920*637a0070SStefano Zampini   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
1921*637a0070SStefano Zampini   if (size > 1) {
1922*637a0070SStefano Zampini     ierr = MatSetType(*A,MATMPIDENSECUDA);CHKERRQ(ierr);
1923*637a0070SStefano Zampini     ierr = MatMPIDenseCUDASetPreallocation(*A,data);CHKERRQ(ierr);
1924*637a0070SStefano Zampini     if (data) {  /* user provided data array, so no need to assemble */
1925*637a0070SStefano Zampini       ierr = MatSetUpMultiply_MPIDense(*A);CHKERRQ(ierr);
1926*637a0070SStefano Zampini       (*A)->assembled = PETSC_TRUE;
1927*637a0070SStefano Zampini     }
1928*637a0070SStefano Zampini   } else {
1929*637a0070SStefano Zampini     ierr = MatSetType(*A,MATSEQDENSECUDA);CHKERRQ(ierr);
1930*637a0070SStefano Zampini     ierr = MatSeqDenseCUDASetPreallocation(*A,data);CHKERRQ(ierr);
1931*637a0070SStefano Zampini   }
1932*637a0070SStefano Zampini   PetscFunctionReturn(0);
1933*637a0070SStefano Zampini }
1934*637a0070SStefano Zampini #endif
1935*637a0070SStefano Zampini 
19366849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat)
19378965ea79SLois Curfman McInnes {
19388965ea79SLois Curfman McInnes   Mat            mat;
19393501a2bdSLois Curfman McInnes   Mat_MPIDense   *a,*oldmat = (Mat_MPIDense*)A->data;
1940dfbe8321SBarry Smith   PetscErrorCode ierr;
19418965ea79SLois Curfman McInnes 
19423a40ed3dSBarry Smith   PetscFunctionBegin;
19438965ea79SLois Curfman McInnes   *newmat = 0;
1944ce94432eSBarry Smith   ierr    = MatCreate(PetscObjectComm((PetscObject)A),&mat);CHKERRQ(ierr);
1945d0f46423SBarry Smith   ierr    = MatSetSizes(mat,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
19467adad957SLisandro Dalcin   ierr    = MatSetType(mat,((PetscObject)A)->type_name);CHKERRQ(ierr);
1947834f8fabSBarry Smith   a       = (Mat_MPIDense*)mat->data;
19485aa7edbeSHong Zhang 
1949d5f3da31SBarry Smith   mat->factortype   = A->factortype;
1950c456f294SBarry Smith   mat->assembled    = PETSC_TRUE;
1951273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
19528965ea79SLois Curfman McInnes 
19538965ea79SLois Curfman McInnes   a->size         = oldmat->size;
19548965ea79SLois Curfman McInnes   a->rank         = oldmat->rank;
1955e0fa3b82SLois Curfman McInnes   mat->insertmode = NOT_SET_VALUES;
19563782ba37SSatish Balay   a->donotstash   = oldmat->donotstash;
1957e04c1aa4SHong Zhang 
19581e1e43feSBarry Smith   ierr = PetscLayoutReference(A->rmap,&mat->rmap);CHKERRQ(ierr);
19591e1e43feSBarry Smith   ierr = PetscLayoutReference(A->cmap,&mat->cmap);CHKERRQ(ierr);
19608965ea79SLois Curfman McInnes 
19615609ef8eSBarry Smith   ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
19623bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr);
1963*637a0070SStefano Zampini   ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr);
196401b82886SBarry Smith 
19658965ea79SLois Curfman McInnes   *newmat = mat;
19663a40ed3dSBarry Smith   PetscFunctionReturn(0);
19678965ea79SLois Curfman McInnes }
19688965ea79SLois Curfman McInnes 
1969eb91f321SVaclav Hapla PetscErrorCode MatLoad_MPIDense(Mat newMat, PetscViewer viewer)
1970eb91f321SVaclav Hapla {
1971eb91f321SVaclav Hapla   PetscErrorCode ierr;
197287d5ce66SSatish Balay   PetscBool      isbinary;
197387d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5)
197487d5ce66SSatish Balay   PetscBool      ishdf5;
197587d5ce66SSatish Balay #endif
1976eb91f321SVaclav Hapla 
1977eb91f321SVaclav Hapla   PetscFunctionBegin;
1978eb91f321SVaclav Hapla   PetscValidHeaderSpecific(newMat,MAT_CLASSID,1);
1979eb91f321SVaclav Hapla   PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2);
1980eb91f321SVaclav Hapla   /* force binary viewer to load .info file if it has not yet done so */
1981eb91f321SVaclav Hapla   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
1982eb91f321SVaclav Hapla   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
198387d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5)
1984eb91f321SVaclav Hapla   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERHDF5,  &ishdf5);CHKERRQ(ierr);
198587d5ce66SSatish Balay #endif
1986eb91f321SVaclav Hapla   if (isbinary) {
19878491ab44SLisandro Dalcin     ierr = MatLoad_Dense_Binary(newMat,viewer);CHKERRQ(ierr);
1988eb91f321SVaclav Hapla #if defined(PETSC_HAVE_HDF5)
198987d5ce66SSatish Balay   } else if (ishdf5) {
1990eb91f321SVaclav Hapla     ierr = MatLoad_Dense_HDF5(newMat,viewer);CHKERRQ(ierr);
1991eb91f321SVaclav Hapla #endif
199287d5ce66SSatish Balay   } else SETERRQ2(PetscObjectComm((PetscObject)newMat),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)newMat)->type_name);
1993eb91f321SVaclav Hapla   PetscFunctionReturn(0);
1994eb91f321SVaclav Hapla }
1995eb91f321SVaclav Hapla 
1996ace3abfcSBarry Smith PetscErrorCode MatEqual_MPIDense(Mat A,Mat B,PetscBool  *flag)
19976e4ee0c6SHong Zhang {
19986e4ee0c6SHong Zhang   Mat_MPIDense   *matB = (Mat_MPIDense*)B->data,*matA = (Mat_MPIDense*)A->data;
19996e4ee0c6SHong Zhang   Mat            a,b;
2000ace3abfcSBarry Smith   PetscBool      flg;
20016e4ee0c6SHong Zhang   PetscErrorCode ierr;
200290ace30eSBarry Smith 
20036e4ee0c6SHong Zhang   PetscFunctionBegin;
20046e4ee0c6SHong Zhang   a    = matA->A;
20056e4ee0c6SHong Zhang   b    = matB->A;
20066e4ee0c6SHong Zhang   ierr = MatEqual(a,b,&flg);CHKERRQ(ierr);
2007b2566f29SBarry Smith   ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
20086e4ee0c6SHong Zhang   PetscFunctionReturn(0);
20096e4ee0c6SHong Zhang }
201090ace30eSBarry Smith 
2011baa3c1c6SHong Zhang PetscErrorCode MatDestroy_MatTransMatMult_MPIDense_MPIDense(Mat A)
2012baa3c1c6SHong Zhang {
2013baa3c1c6SHong Zhang   PetscErrorCode        ierr;
2014baa3c1c6SHong Zhang   Mat_MPIDense          *a = (Mat_MPIDense*)A->data;
2015baa3c1c6SHong Zhang   Mat_TransMatMultDense *atb = a->atbdense;
2016baa3c1c6SHong Zhang 
2017baa3c1c6SHong Zhang   PetscFunctionBegin;
2018*637a0070SStefano Zampini   ierr = PetscFree2(atb->sendbuf,atb->recvcounts);CHKERRQ(ierr);
2019*637a0070SStefano Zampini   ierr = MatDestroy(&atb->atb);CHKERRQ(ierr);
2020*637a0070SStefano Zampini   ierr = (*atb->destroy)(A);CHKERRQ(ierr);
2021baa3c1c6SHong Zhang   ierr = PetscFree(atb);CHKERRQ(ierr);
2022baa3c1c6SHong Zhang   PetscFunctionReturn(0);
2023baa3c1c6SHong Zhang }
2024baa3c1c6SHong Zhang 
2025cc48ffa7SToby Isaac PetscErrorCode MatDestroy_MatMatTransMult_MPIDense_MPIDense(Mat A)
2026cc48ffa7SToby Isaac {
2027cc48ffa7SToby Isaac   PetscErrorCode        ierr;
2028cc48ffa7SToby Isaac   Mat_MPIDense          *a = (Mat_MPIDense*)A->data;
2029cc48ffa7SToby Isaac   Mat_MatTransMultDense *abt = a->abtdense;
2030cc48ffa7SToby Isaac 
2031cc48ffa7SToby Isaac   PetscFunctionBegin;
2032cc48ffa7SToby Isaac   ierr = PetscFree2(abt->buf[0],abt->buf[1]);CHKERRQ(ierr);
2033faa55883SToby Isaac   ierr = PetscFree2(abt->recvcounts,abt->recvdispls);CHKERRQ(ierr);
2034cc48ffa7SToby Isaac   ierr = (abt->destroy)(A);CHKERRQ(ierr);
2035cc48ffa7SToby Isaac   ierr = PetscFree(abt);CHKERRQ(ierr);
2036cc48ffa7SToby Isaac   PetscFunctionReturn(0);
2037cc48ffa7SToby Isaac }
2038cc48ffa7SToby Isaac 
2039cb20be35SHong Zhang PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C)
2040cb20be35SHong Zhang {
2041baa3c1c6SHong Zhang   Mat_MPIDense          *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data;
2042baa3c1c6SHong Zhang   Mat_TransMatMultDense *atb = c->atbdense;
2043cb20be35SHong Zhang   PetscErrorCode        ierr;
2044cb20be35SHong Zhang   MPI_Comm              comm;
2045*637a0070SStefano Zampini   PetscMPIInt           size,*recvcounts=atb->recvcounts;
2046*637a0070SStefano Zampini   PetscScalar           *carray,*sendbuf=atb->sendbuf;
2047*637a0070SStefano Zampini   const PetscScalar     *atbarray;
2048d5017740SHong Zhang   PetscInt              i,cN=C->cmap->N,cM=C->rmap->N,proc,k,j;
2049e68c0b26SHong Zhang   const PetscInt        *ranges;
2050cb20be35SHong Zhang 
2051cb20be35SHong Zhang   PetscFunctionBegin;
2052cb20be35SHong Zhang   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
2053cb20be35SHong Zhang   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2054e68c0b26SHong Zhang 
2055c5ef1628SHong Zhang   /* compute atbarray = aseq^T * bseq */
2056*637a0070SStefano Zampini   ierr = MatTransposeMatMult(a->A,b->A,atb->atb ? MAT_REUSE_MATRIX : MAT_INITIAL_MATRIX,PETSC_DEFAULT,&atb->atb);CHKERRQ(ierr);
2057cb20be35SHong Zhang 
2058cb20be35SHong Zhang   ierr = MatGetOwnershipRanges(C,&ranges);CHKERRQ(ierr);
2059c5ef1628SHong Zhang   for (i=0; i<size; i++) recvcounts[i] = (ranges[i+1] - ranges[i])*cN;
2060cb20be35SHong Zhang 
2061660d5466SHong Zhang   /* arrange atbarray into sendbuf */
2062*637a0070SStefano Zampini   ierr = MatDenseGetArrayRead(atb->atb,&atbarray);CHKERRQ(ierr);
2063*637a0070SStefano Zampini   for (proc=0, k=0; proc<size; proc++) {
2064baa3c1c6SHong Zhang     for (j=0; j<cN; j++) {
2065c5ef1628SHong Zhang       for (i=ranges[proc]; i<ranges[proc+1]; i++) sendbuf[k++] = atbarray[i+j*cM];
2066cb20be35SHong Zhang     }
2067cb20be35SHong Zhang   }
2068*637a0070SStefano Zampini   ierr = MatDenseRestoreArrayRead(atb->atb,&atbarray);CHKERRQ(ierr);
2069*637a0070SStefano Zampini 
2070c5ef1628SHong Zhang   /* sum all atbarray to local values of C */
2071660d5466SHong Zhang   ierr = MatDenseGetArray(c->A,&carray);CHKERRQ(ierr);
20723462b7efSHong Zhang   ierr = MPI_Reduce_scatter(sendbuf,carray,recvcounts,MPIU_SCALAR,MPIU_SUM,comm);CHKERRQ(ierr);
2073660d5466SHong Zhang   ierr = MatDenseRestoreArray(c->A,&carray);CHKERRQ(ierr);
2074cb20be35SHong Zhang   PetscFunctionReturn(0);
2075cb20be35SHong Zhang }
2076cb20be35SHong Zhang 
20774222ddf1SHong Zhang PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat C)
2078cb20be35SHong Zhang {
2079cb20be35SHong Zhang   PetscErrorCode        ierr;
2080cb20be35SHong Zhang   MPI_Comm              comm;
2081baa3c1c6SHong Zhang   PetscMPIInt           size;
2082660d5466SHong Zhang   PetscInt              cm=A->cmap->n,cM,cN=B->cmap->N;
2083baa3c1c6SHong Zhang   Mat_MPIDense          *c;
2084baa3c1c6SHong Zhang   Mat_TransMatMultDense *atb;
2085cb20be35SHong Zhang 
2086cb20be35SHong Zhang   PetscFunctionBegin;
2087baa3c1c6SHong Zhang   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
2088cb20be35SHong Zhang   if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) {
2089cb20be35SHong Zhang     SETERRQ4(comm,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != B (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend);
2090cb20be35SHong Zhang   }
2091cb20be35SHong Zhang 
20924222ddf1SHong Zhang   /* create matrix product C */
20934222ddf1SHong Zhang   ierr = MatSetSizes(C,cm,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr);
20944222ddf1SHong Zhang   ierr = MatSetType(C,MATMPIDENSE);CHKERRQ(ierr);
209518992e5dSStefano Zampini   ierr = MatSetUp(C);CHKERRQ(ierr);
20964222ddf1SHong Zhang   ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
20974222ddf1SHong Zhang   ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2098baa3c1c6SHong Zhang 
20994222ddf1SHong Zhang   /* create data structure for reuse C */
2100baa3c1c6SHong Zhang   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2101baa3c1c6SHong Zhang   ierr = PetscNew(&atb);CHKERRQ(ierr);
21024222ddf1SHong Zhang   cM   = C->rmap->N;
2103*637a0070SStefano Zampini   ierr = PetscMalloc2(cM*cN,&atb->sendbuf,size,&atb->recvcounts);CHKERRQ(ierr);
2104baa3c1c6SHong Zhang 
21054222ddf1SHong Zhang   c               = (Mat_MPIDense*)C->data;
2106baa3c1c6SHong Zhang   c->atbdense     = atb;
21074222ddf1SHong Zhang   atb->destroy    = C->ops->destroy;
21084222ddf1SHong Zhang   C->ops->destroy = MatDestroy_MatTransMatMult_MPIDense_MPIDense;
2109cb20be35SHong Zhang   PetscFunctionReturn(0);
2110cb20be35SHong Zhang }
2111cb20be35SHong Zhang 
21124222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat A, Mat B, PetscReal fill, Mat C)
2113cb20be35SHong Zhang {
2114cb20be35SHong Zhang   PetscErrorCode        ierr;
2115cc48ffa7SToby Isaac   MPI_Comm              comm;
2116cc48ffa7SToby Isaac   PetscMPIInt           i, size;
2117cc48ffa7SToby Isaac   PetscInt              maxRows, bufsiz;
2118cc48ffa7SToby Isaac   Mat_MPIDense          *c;
2119cc48ffa7SToby Isaac   PetscMPIInt           tag;
21204222ddf1SHong Zhang   PetscInt              alg;
2121cc48ffa7SToby Isaac   Mat_MatTransMultDense *abt;
21224222ddf1SHong Zhang   Mat_Product           *product = C->product;
21234222ddf1SHong Zhang   PetscBool             flg;
2124cc48ffa7SToby Isaac 
2125cc48ffa7SToby Isaac   PetscFunctionBegin;
21264222ddf1SHong Zhang   /* check local size of A and B */
2127*637a0070SStefano Zampini   if (A->cmap->n != B->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local column dimensions are incompatible, A (%D) != B (%D)",A->cmap->n,B->cmap->n);
2128cc48ffa7SToby Isaac 
21294222ddf1SHong Zhang   ierr = PetscStrcmp(product->alg,"allgatherv",&flg);CHKERRQ(ierr);
2130*637a0070SStefano Zampini   alg  = flg ? 0 : 1;
2131cc48ffa7SToby Isaac 
21324222ddf1SHong Zhang   /* setup matrix product C */
21334222ddf1SHong Zhang   ierr = MatSetSizes(C,A->rmap->n,B->rmap->n,A->rmap->N,B->rmap->N);CHKERRQ(ierr);
21344222ddf1SHong Zhang   ierr = MatSetType(C,MATMPIDENSE);CHKERRQ(ierr);
213518992e5dSStefano Zampini   ierr = MatSetUp(C);CHKERRQ(ierr);
21364222ddf1SHong Zhang   ierr = PetscObjectGetNewTag((PetscObject)C, &tag);CHKERRQ(ierr);
21374222ddf1SHong Zhang   ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
21384222ddf1SHong Zhang   ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
21394222ddf1SHong Zhang 
21404222ddf1SHong Zhang   /* create data structure for reuse C */
21414222ddf1SHong Zhang   ierr = PetscObjectGetComm((PetscObject)C,&comm);CHKERRQ(ierr);
2142cc48ffa7SToby Isaac   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2143cc48ffa7SToby Isaac   ierr = PetscNew(&abt);CHKERRQ(ierr);
2144cc48ffa7SToby Isaac   abt->tag = tag;
2145faa55883SToby Isaac   abt->alg = alg;
2146faa55883SToby Isaac   switch (alg) {
21474222ddf1SHong Zhang   case 1: /* alg: "cyclic" */
2148cc48ffa7SToby Isaac     for (maxRows = 0, i = 0; i < size; i++) maxRows = PetscMax(maxRows, (B->rmap->range[i + 1] - B->rmap->range[i]));
2149cc48ffa7SToby Isaac     bufsiz = A->cmap->N * maxRows;
2150cc48ffa7SToby Isaac     ierr = PetscMalloc2(bufsiz,&(abt->buf[0]),bufsiz,&(abt->buf[1]));CHKERRQ(ierr);
2151faa55883SToby Isaac     break;
21524222ddf1SHong Zhang   default: /* alg: "allgatherv" */
2153faa55883SToby Isaac     ierr = PetscMalloc2(B->rmap->n * B->cmap->N, &(abt->buf[0]), B->rmap->N * B->cmap->N, &(abt->buf[1]));CHKERRQ(ierr);
2154faa55883SToby Isaac     ierr = PetscMalloc2(size,&(abt->recvcounts),size+1,&(abt->recvdispls));CHKERRQ(ierr);
2155faa55883SToby Isaac     for (i = 0; i <= size; i++) abt->recvdispls[i] = B->rmap->range[i] * A->cmap->N;
2156faa55883SToby Isaac     for (i = 0; i < size; i++) abt->recvcounts[i] = abt->recvdispls[i + 1] - abt->recvdispls[i];
2157faa55883SToby Isaac     break;
2158faa55883SToby Isaac   }
2159cc48ffa7SToby Isaac 
21604222ddf1SHong Zhang   c                               = (Mat_MPIDense*)C->data;
2161cc48ffa7SToby Isaac   c->abtdense                     = abt;
21624222ddf1SHong Zhang   abt->destroy                    = C->ops->destroy;
21634222ddf1SHong Zhang   C->ops->destroy                 = MatDestroy_MatMatTransMult_MPIDense_MPIDense;
21644222ddf1SHong Zhang   C->ops->mattransposemultnumeric = MatMatTransposeMultNumeric_MPIDense_MPIDense;
2165cc48ffa7SToby Isaac   PetscFunctionReturn(0);
2166cc48ffa7SToby Isaac }
2167cc48ffa7SToby Isaac 
2168faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(Mat A, Mat B, Mat C)
2169cc48ffa7SToby Isaac {
2170cc48ffa7SToby Isaac   Mat_MPIDense          *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data;
2171cc48ffa7SToby Isaac   Mat_MatTransMultDense *abt = c->abtdense;
2172cc48ffa7SToby Isaac   PetscErrorCode        ierr;
2173cc48ffa7SToby Isaac   MPI_Comm              comm;
2174cc48ffa7SToby Isaac   PetscMPIInt           rank,size, sendsiz, recvsiz, sendto, recvfrom, recvisfrom;
2175*637a0070SStefano Zampini   PetscScalar           *sendbuf, *recvbuf=0, *cv;
2176cc48ffa7SToby Isaac   PetscInt              i,cK=A->cmap->N,k,j,bn;
2177cc48ffa7SToby Isaac   PetscScalar           _DOne=1.0,_DZero=0.0;
2178*637a0070SStefano Zampini   const PetscScalar     *av,*bv;
2179*637a0070SStefano Zampini   PetscBLASInt          cm, cn, ck, alda, blda, clda;
2180cc48ffa7SToby Isaac   MPI_Request           reqs[2];
2181cc48ffa7SToby Isaac   const PetscInt        *ranges;
2182cc48ffa7SToby Isaac 
2183cc48ffa7SToby Isaac   PetscFunctionBegin;
2184cc48ffa7SToby Isaac   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
2185cc48ffa7SToby Isaac   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
2186cc48ffa7SToby Isaac   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2187*637a0070SStefano Zampini   ierr = MatDenseGetArrayRead(a->A,&av);CHKERRQ(ierr);
2188*637a0070SStefano Zampini   ierr = MatDenseGetArrayRead(b->A,&bv);CHKERRQ(ierr);
2189*637a0070SStefano Zampini   ierr = MatDenseGetArray(c->A,&cv);CHKERRQ(ierr);
2190*637a0070SStefano Zampini   ierr = MatDenseGetLDA(a->A,&i);CHKERRQ(ierr);
2191*637a0070SStefano Zampini   ierr = PetscBLASIntCast(i,&alda);CHKERRQ(ierr);
2192*637a0070SStefano Zampini   ierr = MatDenseGetLDA(b->A,&i);CHKERRQ(ierr);
2193*637a0070SStefano Zampini   ierr = PetscBLASIntCast(i,&blda);CHKERRQ(ierr);
2194*637a0070SStefano Zampini   ierr = MatDenseGetLDA(c->A,&i);CHKERRQ(ierr);
2195*637a0070SStefano Zampini   ierr = PetscBLASIntCast(i,&clda);CHKERRQ(ierr);
2196cc48ffa7SToby Isaac   ierr = MatGetOwnershipRanges(B,&ranges);CHKERRQ(ierr);
2197cc48ffa7SToby Isaac   bn   = B->rmap->n;
2198*637a0070SStefano Zampini   if (blda == bn) {
2199*637a0070SStefano Zampini     sendbuf = (PetscScalar*)bv;
2200cc48ffa7SToby Isaac   } else {
2201cc48ffa7SToby Isaac     sendbuf = abt->buf[0];
2202cc48ffa7SToby Isaac     for (k = 0, i = 0; i < cK; i++) {
2203cc48ffa7SToby Isaac       for (j = 0; j < bn; j++, k++) {
2204*637a0070SStefano Zampini         sendbuf[k] = bv[i * blda + j];
2205cc48ffa7SToby Isaac       }
2206cc48ffa7SToby Isaac     }
2207cc48ffa7SToby Isaac   }
2208cc48ffa7SToby Isaac   if (size > 1) {
2209cc48ffa7SToby Isaac     sendto = (rank + size - 1) % size;
2210cc48ffa7SToby Isaac     recvfrom = (rank + size + 1) % size;
2211cc48ffa7SToby Isaac   } else {
2212cc48ffa7SToby Isaac     sendto = recvfrom = 0;
2213cc48ffa7SToby Isaac   }
2214cc48ffa7SToby Isaac   ierr = PetscBLASIntCast(cK,&ck);CHKERRQ(ierr);
2215cc48ffa7SToby Isaac   ierr = PetscBLASIntCast(c->A->rmap->n,&cm);CHKERRQ(ierr);
2216cc48ffa7SToby Isaac   recvisfrom = rank;
2217cc48ffa7SToby Isaac   for (i = 0; i < size; i++) {
2218cc48ffa7SToby Isaac     /* we have finished receiving in sending, bufs can be read/modified */
2219cc48ffa7SToby Isaac     PetscInt nextrecvisfrom = (recvisfrom + 1) % size; /* which process the next recvbuf will originate on */
2220cc48ffa7SToby Isaac     PetscInt nextbn = ranges[nextrecvisfrom + 1] - ranges[nextrecvisfrom];
2221cc48ffa7SToby Isaac 
2222cc48ffa7SToby Isaac     if (nextrecvisfrom != rank) {
2223cc48ffa7SToby Isaac       /* start the cyclic sends from sendbuf, to recvbuf (which will switch to sendbuf) */
2224cc48ffa7SToby Isaac       sendsiz = cK * bn;
2225cc48ffa7SToby Isaac       recvsiz = cK * nextbn;
2226cc48ffa7SToby Isaac       recvbuf = (i & 1) ? abt->buf[0] : abt->buf[1];
2227cc48ffa7SToby Isaac       ierr = MPI_Isend(sendbuf, sendsiz, MPIU_SCALAR, sendto, abt->tag, comm, &reqs[0]);CHKERRQ(ierr);
2228cc48ffa7SToby Isaac       ierr = MPI_Irecv(recvbuf, recvsiz, MPIU_SCALAR, recvfrom, abt->tag, comm, &reqs[1]);CHKERRQ(ierr);
2229cc48ffa7SToby Isaac     }
2230cc48ffa7SToby Isaac 
2231cc48ffa7SToby Isaac     /* local aseq * sendbuf^T */
2232cc48ffa7SToby Isaac     ierr = PetscBLASIntCast(ranges[recvisfrom + 1] - ranges[recvisfrom], &cn);CHKERRQ(ierr);
2233*637a0070SStefano Zampini     PetscStackCallBLAS("BLASgemm",BLASgemm_("N","T",&cm,&cn,&ck,&_DOne,av,&alda,sendbuf,&cn,&_DZero,cv + clda * ranges[recvisfrom],&clda));
2234cc48ffa7SToby Isaac 
2235cc48ffa7SToby Isaac     if (nextrecvisfrom != rank) {
2236cc48ffa7SToby Isaac       /* wait for the sends and receives to complete, swap sendbuf and recvbuf */
2237cc48ffa7SToby Isaac       ierr = MPI_Waitall(2, reqs, MPI_STATUSES_IGNORE);CHKERRQ(ierr);
2238cc48ffa7SToby Isaac     }
2239cc48ffa7SToby Isaac     bn = nextbn;
2240cc48ffa7SToby Isaac     recvisfrom = nextrecvisfrom;
2241cc48ffa7SToby Isaac     sendbuf = recvbuf;
2242cc48ffa7SToby Isaac   }
2243*637a0070SStefano Zampini   ierr = MatDenseRestoreArrayRead(a->A,&av);CHKERRQ(ierr);
2244*637a0070SStefano Zampini   ierr = MatDenseRestoreArrayRead(b->A,&bv);CHKERRQ(ierr);
2245*637a0070SStefano Zampini   ierr = MatDenseRestoreArray(c->A,&cv);CHKERRQ(ierr);
2246cc48ffa7SToby Isaac   PetscFunctionReturn(0);
2247cc48ffa7SToby Isaac }
2248cc48ffa7SToby Isaac 
2249faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(Mat A, Mat B, Mat C)
2250faa55883SToby Isaac {
2251faa55883SToby Isaac   Mat_MPIDense          *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data;
2252faa55883SToby Isaac   Mat_MatTransMultDense *abt = c->abtdense;
2253faa55883SToby Isaac   PetscErrorCode        ierr;
2254faa55883SToby Isaac   MPI_Comm              comm;
2255*637a0070SStefano Zampini   PetscMPIInt           size;
2256*637a0070SStefano Zampini   PetscScalar           *cv, *sendbuf, *recvbuf;
2257*637a0070SStefano Zampini   const PetscScalar     *av,*bv;
2258*637a0070SStefano Zampini   PetscInt              blda,i,cK=A->cmap->N,k,j,bn;
2259faa55883SToby Isaac   PetscScalar           _DOne=1.0,_DZero=0.0;
2260*637a0070SStefano Zampini   PetscBLASInt          cm, cn, ck, alda, clda;
2261faa55883SToby Isaac 
2262faa55883SToby Isaac   PetscFunctionBegin;
2263faa55883SToby Isaac   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
2264faa55883SToby Isaac   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2265*637a0070SStefano Zampini   ierr = MatDenseGetArrayRead(a->A,&av);CHKERRQ(ierr);
2266*637a0070SStefano Zampini   ierr = MatDenseGetArrayRead(b->A,&bv);CHKERRQ(ierr);
2267*637a0070SStefano Zampini   ierr = MatDenseGetArray(c->A,&cv);CHKERRQ(ierr);
2268*637a0070SStefano Zampini   ierr = MatDenseGetLDA(a->A,&i);CHKERRQ(ierr);
2269*637a0070SStefano Zampini   ierr = PetscBLASIntCast(i,&alda);CHKERRQ(ierr);
2270*637a0070SStefano Zampini   ierr = MatDenseGetLDA(b->A,&blda);CHKERRQ(ierr);
2271*637a0070SStefano Zampini   ierr = MatDenseGetLDA(c->A,&i);CHKERRQ(ierr);
2272*637a0070SStefano Zampini   ierr = PetscBLASIntCast(i,&clda);CHKERRQ(ierr);
2273faa55883SToby Isaac   /* copy transpose of B into buf[0] */
2274faa55883SToby Isaac   bn      = B->rmap->n;
2275faa55883SToby Isaac   sendbuf = abt->buf[0];
2276faa55883SToby Isaac   recvbuf = abt->buf[1];
2277faa55883SToby Isaac   for (k = 0, j = 0; j < bn; j++) {
2278faa55883SToby Isaac     for (i = 0; i < cK; i++, k++) {
2279*637a0070SStefano Zampini       sendbuf[k] = bv[i * blda + j];
2280faa55883SToby Isaac     }
2281faa55883SToby Isaac   }
2282*637a0070SStefano Zampini   ierr = MatDenseRestoreArrayRead(b->A,&bv);CHKERRQ(ierr);
2283faa55883SToby Isaac   ierr = MPI_Allgatherv(sendbuf, bn * cK, MPIU_SCALAR, recvbuf, abt->recvcounts, abt->recvdispls, MPIU_SCALAR, comm);CHKERRQ(ierr);
2284faa55883SToby Isaac   ierr = PetscBLASIntCast(cK,&ck);CHKERRQ(ierr);
2285faa55883SToby Isaac   ierr = PetscBLASIntCast(c->A->rmap->n,&cm);CHKERRQ(ierr);
2286faa55883SToby Isaac   ierr = PetscBLASIntCast(c->A->cmap->n,&cn);CHKERRQ(ierr);
2287*637a0070SStefano Zampini   PetscStackCallBLAS("BLASgemm",BLASgemm_("N","N",&cm,&cn,&ck,&_DOne,av,&alda,recvbuf,&ck,&_DZero,cv,&clda));
2288*637a0070SStefano Zampini   ierr = MatDenseRestoreArrayRead(a->A,&av);CHKERRQ(ierr);
2289*637a0070SStefano Zampini   ierr = MatDenseRestoreArrayRead(b->A,&bv);CHKERRQ(ierr);
2290*637a0070SStefano Zampini   ierr = MatDenseRestoreArray(c->A,&cv);CHKERRQ(ierr);
2291faa55883SToby Isaac   PetscFunctionReturn(0);
2292faa55883SToby Isaac }
2293faa55883SToby Isaac 
2294faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat A, Mat B, Mat C)
2295faa55883SToby Isaac {
2296faa55883SToby Isaac   Mat_MPIDense          *c=(Mat_MPIDense*)C->data;
2297faa55883SToby Isaac   Mat_MatTransMultDense *abt = c->abtdense;
2298faa55883SToby Isaac   PetscErrorCode        ierr;
2299faa55883SToby Isaac 
2300faa55883SToby Isaac   PetscFunctionBegin;
2301faa55883SToby Isaac   switch (abt->alg) {
2302faa55883SToby Isaac   case 1:
2303faa55883SToby Isaac     ierr = MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(A, B, C);CHKERRQ(ierr);
2304faa55883SToby Isaac     break;
2305faa55883SToby Isaac   default:
2306faa55883SToby Isaac     ierr = MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(A, B, C);CHKERRQ(ierr);
2307faa55883SToby Isaac     break;
2308faa55883SToby Isaac   }
2309faa55883SToby Isaac   PetscFunctionReturn(0);
2310faa55883SToby Isaac }
2311faa55883SToby Isaac 
2312320f2790SHong Zhang PetscErrorCode MatDestroy_MatMatMult_MPIDense_MPIDense(Mat A)
2313320f2790SHong Zhang {
2314320f2790SHong Zhang   PetscErrorCode   ierr;
2315320f2790SHong Zhang   Mat_MPIDense     *a = (Mat_MPIDense*)A->data;
2316320f2790SHong Zhang   Mat_MatMultDense *ab = a->abdense;
2317320f2790SHong Zhang 
2318320f2790SHong Zhang   PetscFunctionBegin;
2319320f2790SHong Zhang   ierr = MatDestroy(&ab->Ce);CHKERRQ(ierr);
2320320f2790SHong Zhang   ierr = MatDestroy(&ab->Ae);CHKERRQ(ierr);
2321320f2790SHong Zhang   ierr = MatDestroy(&ab->Be);CHKERRQ(ierr);
2322320f2790SHong Zhang 
2323320f2790SHong Zhang   ierr = (ab->destroy)(A);CHKERRQ(ierr);
2324320f2790SHong Zhang   ierr = PetscFree(ab);CHKERRQ(ierr);
2325320f2790SHong Zhang   PetscFunctionReturn(0);
2326320f2790SHong Zhang }
2327320f2790SHong Zhang 
23285242a7b1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
2329320f2790SHong Zhang PetscErrorCode MatMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C)
2330320f2790SHong Zhang {
2331320f2790SHong Zhang   PetscErrorCode   ierr;
2332320f2790SHong Zhang   Mat_MPIDense     *c=(Mat_MPIDense*)C->data;
2333320f2790SHong Zhang   Mat_MatMultDense *ab=c->abdense;
2334320f2790SHong Zhang 
2335320f2790SHong Zhang   PetscFunctionBegin;
2336de0a22f0SHong Zhang   ierr = MatConvert_MPIDense_Elemental(A,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Ae);CHKERRQ(ierr);
2337de0a22f0SHong Zhang   ierr = MatConvert_MPIDense_Elemental(B,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Be);CHKERRQ(ierr);
23384222ddf1SHong Zhang   ierr = MatMatMultNumeric_Elemental(ab->Ae,ab->Be,ab->Ce);CHKERRQ(ierr);
2339de0a22f0SHong Zhang   ierr = MatConvert(ab->Ce,MATMPIDENSE,MAT_REUSE_MATRIX,&C);CHKERRQ(ierr);
2340320f2790SHong Zhang   PetscFunctionReturn(0);
2341320f2790SHong Zhang }
2342320f2790SHong Zhang 
23434222ddf1SHong Zhang PetscErrorCode MatMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat C)
2344320f2790SHong Zhang {
2345320f2790SHong Zhang   PetscErrorCode   ierr;
2346320f2790SHong Zhang   Mat              Ae,Be,Ce;
2347320f2790SHong Zhang   Mat_MPIDense     *c;
2348320f2790SHong Zhang   Mat_MatMultDense *ab;
2349320f2790SHong Zhang 
2350320f2790SHong Zhang   PetscFunctionBegin;
23514222ddf1SHong Zhang   /* check local size of A and B */
2352320f2790SHong Zhang   if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend) {
2353378336b6SHong Zhang     SETERRQ4(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != B (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend);
2354320f2790SHong Zhang   }
2355320f2790SHong Zhang 
23564222ddf1SHong Zhang   /* create elemental matrices Ae and Be */
23574222ddf1SHong Zhang   ierr = MatCreate(PetscObjectComm((PetscObject)A), &Ae);CHKERRQ(ierr);
23584222ddf1SHong Zhang   ierr = MatSetSizes(Ae,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
23594222ddf1SHong Zhang   ierr = MatSetType(Ae,MATELEMENTAL);CHKERRQ(ierr);
23604222ddf1SHong Zhang   ierr = MatSetUp(Ae);CHKERRQ(ierr);
23614222ddf1SHong Zhang   ierr = MatSetOption(Ae,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr);
2362320f2790SHong Zhang 
23634222ddf1SHong Zhang   ierr = MatCreate(PetscObjectComm((PetscObject)B), &Be);CHKERRQ(ierr);
23644222ddf1SHong Zhang   ierr = MatSetSizes(Be,PETSC_DECIDE,PETSC_DECIDE,B->rmap->N,B->cmap->N);CHKERRQ(ierr);
23654222ddf1SHong Zhang   ierr = MatSetType(Be,MATELEMENTAL);CHKERRQ(ierr);
23664222ddf1SHong Zhang   ierr = MatSetUp(Be);CHKERRQ(ierr);
23674222ddf1SHong Zhang   ierr = MatSetOption(Be,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr);
2368320f2790SHong Zhang 
23694222ddf1SHong Zhang   /* compute symbolic Ce = Ae*Be */
23704222ddf1SHong Zhang   ierr = MatCreate(PetscObjectComm((PetscObject)C),&Ce);CHKERRQ(ierr);
23714222ddf1SHong Zhang   ierr = MatMatMultSymbolic_Elemental(Ae,Be,fill,Ce);CHKERRQ(ierr);
23724222ddf1SHong Zhang 
23734222ddf1SHong Zhang   /* setup C */
23744222ddf1SHong Zhang   ierr = MatSetSizes(C,A->rmap->n,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr);
23754222ddf1SHong Zhang   ierr = MatSetType(C,MATDENSE);CHKERRQ(ierr);
23764222ddf1SHong Zhang   ierr = MatSetUp(C);CHKERRQ(ierr);
2377320f2790SHong Zhang 
2378320f2790SHong Zhang   /* create data structure for reuse Cdense */
2379320f2790SHong Zhang   ierr = PetscNew(&ab);CHKERRQ(ierr);
23804222ddf1SHong Zhang   c                  = (Mat_MPIDense*)C->data;
2381320f2790SHong Zhang   c->abdense         = ab;
2382320f2790SHong Zhang 
2383320f2790SHong Zhang   ab->Ae             = Ae;
2384320f2790SHong Zhang   ab->Be             = Be;
2385320f2790SHong Zhang   ab->Ce             = Ce;
23864222ddf1SHong Zhang   ab->destroy        = C->ops->destroy;
23874222ddf1SHong Zhang   C->ops->destroy        = MatDestroy_MatMatMult_MPIDense_MPIDense;
23884222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIDense;
23894222ddf1SHong Zhang   C->ops->productnumeric = MatProductNumeric_AB;
2390320f2790SHong Zhang   PetscFunctionReturn(0);
2391320f2790SHong Zhang }
23924222ddf1SHong Zhang #endif
23934222ddf1SHong Zhang /* ----------------------------------------------- */
23944222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
23954222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_AB(Mat C)
2396320f2790SHong Zhang {
2397320f2790SHong Zhang   PetscFunctionBegin;
23984222ddf1SHong Zhang   C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIDense;
23994222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AB;
24004222ddf1SHong Zhang   C->ops->productnumeric  = MatProductNumeric_AB;
2401320f2790SHong Zhang   PetscFunctionReturn(0);
2402320f2790SHong Zhang }
24035242a7b1SHong Zhang #endif
240486aefd0dSHong Zhang 
24054222ddf1SHong Zhang static PetscErrorCode MatProductSymbolic_AtB_MPIDense(Mat C)
24064222ddf1SHong Zhang {
24074222ddf1SHong Zhang   PetscErrorCode ierr;
24084222ddf1SHong Zhang   Mat_Product    *product = C->product;
24094222ddf1SHong Zhang 
24104222ddf1SHong Zhang   PetscFunctionBegin;
24114222ddf1SHong Zhang   ierr = MatTransposeMatMultSymbolic_MPIDense_MPIDense(product->A,product->B,product->fill,C);CHKERRQ(ierr);
24124222ddf1SHong Zhang   C->ops->productnumeric          = MatProductNumeric_AtB;
24134222ddf1SHong Zhang   C->ops->transposematmultnumeric = MatTransposeMatMultNumeric_MPIDense_MPIDense;
24144222ddf1SHong Zhang   PetscFunctionReturn(0);
24154222ddf1SHong Zhang }
24164222ddf1SHong Zhang 
24174222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_AtB(Mat C)
24184222ddf1SHong Zhang {
24194222ddf1SHong Zhang   Mat_Product *product = C->product;
24204222ddf1SHong Zhang   Mat         A = product->A,B=product->B;
24214222ddf1SHong Zhang 
24224222ddf1SHong Zhang   PetscFunctionBegin;
24234222ddf1SHong Zhang   if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend)
24244222ddf1SHong Zhang     SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, (%D, %D) != (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend);
24254222ddf1SHong Zhang 
24264222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AtB_MPIDense;
24274222ddf1SHong Zhang   PetscFunctionReturn(0);
24284222ddf1SHong Zhang }
24294222ddf1SHong Zhang 
24304222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_ABt(Mat C)
24314222ddf1SHong Zhang {
24324222ddf1SHong Zhang   PetscErrorCode ierr;
24334222ddf1SHong Zhang   Mat_Product    *product = C->product;
24344222ddf1SHong Zhang   const char     *algTypes[2] = {"allgatherv","cyclic"};
24354222ddf1SHong Zhang   PetscInt       alg,nalg = 2;
24364222ddf1SHong Zhang   PetscBool      flg = PETSC_FALSE;
24374222ddf1SHong Zhang 
24384222ddf1SHong Zhang   PetscFunctionBegin;
24394222ddf1SHong Zhang   /* Set default algorithm */
24404222ddf1SHong Zhang   alg = 0; /* default is allgatherv */
24414222ddf1SHong Zhang   ierr = PetscStrcmp(product->alg,"default",&flg);CHKERRQ(ierr);
24424222ddf1SHong Zhang   if (flg) {
24434222ddf1SHong Zhang     ierr = MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]);CHKERRQ(ierr);
24444222ddf1SHong Zhang   }
24454222ddf1SHong Zhang 
24464222ddf1SHong Zhang   /* Get runtime option */
24474222ddf1SHong Zhang   if (product->api_user) {
24484222ddf1SHong Zhang     ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatMatTransposeMult","Mat");CHKERRQ(ierr);
24494222ddf1SHong Zhang     ierr = PetscOptionsEList("-matmattransmult_mpidense_mpidense_via","Algorithmic approach","MatMatTransposeMult",algTypes,nalg,algTypes[alg],&alg,&flg);CHKERRQ(ierr);
24504222ddf1SHong Zhang     ierr = PetscOptionsEnd();CHKERRQ(ierr);
24514222ddf1SHong Zhang   } else {
24524222ddf1SHong Zhang     ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatProduct_ABt","Mat");CHKERRQ(ierr);
24534222ddf1SHong Zhang     ierr = PetscOptionsEList("-matproduct_abt_mpidense_mpidense_via","Algorithmic approach","MatProduct_ABt",algTypes,nalg,algTypes[alg],&alg,&flg);CHKERRQ(ierr);
24544222ddf1SHong Zhang     ierr = PetscOptionsEnd();CHKERRQ(ierr);
24554222ddf1SHong Zhang   }
24564222ddf1SHong Zhang   if (flg) {
24574222ddf1SHong Zhang     ierr = MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]);CHKERRQ(ierr);
24584222ddf1SHong Zhang   }
24594222ddf1SHong Zhang 
24604222ddf1SHong Zhang   C->ops->mattransposemultsymbolic = MatMatTransposeMultSymbolic_MPIDense_MPIDense;
24614222ddf1SHong Zhang   C->ops->productsymbolic          = MatProductSymbolic_ABt;
24624222ddf1SHong Zhang   C->ops->productnumeric           = MatProductNumeric_ABt;
24634222ddf1SHong Zhang   PetscFunctionReturn(0);
24644222ddf1SHong Zhang }
24654222ddf1SHong Zhang 
24664222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense(Mat C)
24674222ddf1SHong Zhang {
24684222ddf1SHong Zhang   PetscErrorCode ierr;
24694222ddf1SHong Zhang   Mat_Product    *product = C->product;
24704222ddf1SHong Zhang 
24714222ddf1SHong Zhang   PetscFunctionBegin;
24724222ddf1SHong Zhang   switch (product->type) {
24734222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
24744222ddf1SHong Zhang   case MATPRODUCT_AB:
24754222ddf1SHong Zhang     ierr = MatProductSetFromOptions_MPIDense_AB(C);CHKERRQ(ierr);
24764222ddf1SHong Zhang     break;
24774222ddf1SHong Zhang #endif
24784222ddf1SHong Zhang   case MATPRODUCT_AtB:
24794222ddf1SHong Zhang     ierr = MatProductSetFromOptions_MPIDense_AtB(C);CHKERRQ(ierr);
24804222ddf1SHong Zhang     break;
24814222ddf1SHong Zhang   case MATPRODUCT_ABt:
24824222ddf1SHong Zhang     ierr = MatProductSetFromOptions_MPIDense_ABt(C);CHKERRQ(ierr);
24834222ddf1SHong Zhang     break;
2484544a5e07SHong Zhang   default: SETERRQ1(PetscObjectComm((PetscObject)C),PETSC_ERR_SUP,"MatProduct type %s is not supported for MPIDense and MPIDense matrices",MatProductTypes[product->type]);
24854222ddf1SHong Zhang   }
24864222ddf1SHong Zhang   PetscFunctionReturn(0);
24874222ddf1SHong Zhang }
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