1be1d678aSKris Buschelman 2ed3cc1f0SBarry Smith /* 3ed3cc1f0SBarry Smith Basic functions for basic parallel dense matrices. 447d993e7Ssuyashtn Portions of this code are under: 547d993e7Ssuyashtn Copyright (c) 2022 Advanced Micro Devices, Inc. All rights reserved. 6ed3cc1f0SBarry Smith */ 7ed3cc1f0SBarry Smith 8c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h> /*I "petscmat.h" I*/ 98949adfdSHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 10baa3c1c6SHong Zhang #include <petscblaslapack.h> 118965ea79SLois Curfman McInnes 12ab92ecdeSBarry Smith /*@ 1311a5261eSBarry Smith MatDenseGetLocalMatrix - For a `MATMPIDENSE` or `MATSEQDENSE` matrix returns the sequential 14ab92ecdeSBarry Smith matrix that represents the operator. For sequential matrices it returns itself. 15ab92ecdeSBarry Smith 16ab92ecdeSBarry Smith Input Parameter: 172ef1f0ffSBarry Smith . A - the sequential or MPI `MATDENSE` matrix 18ab92ecdeSBarry Smith 19ab92ecdeSBarry Smith Output Parameter: 20ab92ecdeSBarry Smith . B - the inner matrix 21ab92ecdeSBarry Smith 228e6c10adSSatish Balay Level: intermediate 238e6c10adSSatish Balay 241cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MATMPIDENSE`, `MATSEQDENSE` 25ab92ecdeSBarry Smith @*/ 26d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetLocalMatrix(Mat A, Mat *B) 27d71ae5a4SJacob Faibussowitsch { 28ab92ecdeSBarry Smith Mat_MPIDense *mat = (Mat_MPIDense *)A->data; 29ace3abfcSBarry Smith PetscBool flg; 30ab92ecdeSBarry Smith 31ab92ecdeSBarry Smith PetscFunctionBegin; 32d5ea218eSStefano Zampini PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 334f572ea9SToby Isaac PetscAssertPointer(B, 2); 349566063dSJacob Faibussowitsch PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIDENSE, &flg)); 352205254eSKarl Rupp if (flg) *B = mat->A; 36f140bc17SStefano Zampini else { 379566063dSJacob Faibussowitsch PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATSEQDENSE, &flg)); 3828b400f6SJacob Faibussowitsch PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not for matrix type %s", ((PetscObject)A)->type_name); 39f140bc17SStefano Zampini *B = A; 40f140bc17SStefano Zampini } 413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42ab92ecdeSBarry Smith } 43ab92ecdeSBarry Smith 44*66976f2fSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIDense(Mat A, Mat B, MatStructure s) 45d71ae5a4SJacob Faibussowitsch { 46a76f77c3SStefano Zampini Mat_MPIDense *Amat = (Mat_MPIDense *)A->data; 47a76f77c3SStefano Zampini Mat_MPIDense *Bmat = (Mat_MPIDense *)B->data; 48a76f77c3SStefano Zampini 49a76f77c3SStefano Zampini PetscFunctionBegin; 509566063dSJacob Faibussowitsch PetscCall(MatCopy(Amat->A, Bmat->A, s)); 513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 52a76f77c3SStefano Zampini } 53a76f77c3SStefano Zampini 54d71ae5a4SJacob Faibussowitsch PetscErrorCode MatShift_MPIDense(Mat A, PetscScalar alpha) 55d71ae5a4SJacob Faibussowitsch { 562f605a99SJose E. Roman Mat_MPIDense *mat = (Mat_MPIDense *)A->data; 572f605a99SJose E. Roman PetscInt j, lda, rstart = A->rmap->rstart, rend = A->rmap->rend, rend2; 582f605a99SJose E. Roman PetscScalar *v; 592f605a99SJose E. Roman 602f605a99SJose E. Roman PetscFunctionBegin; 612f605a99SJose E. Roman PetscCall(MatDenseGetArray(mat->A, &v)); 622f605a99SJose E. Roman PetscCall(MatDenseGetLDA(mat->A, &lda)); 632f605a99SJose E. Roman rend2 = PetscMin(rend, A->cmap->N); 642f605a99SJose E. Roman if (rend2 > rstart) { 652f605a99SJose E. Roman for (j = rstart; j < rend2; j++) v[j - rstart + j * lda] += alpha; 662f605a99SJose E. Roman PetscCall(PetscLogFlops(rend2 - rstart)); 672f605a99SJose E. Roman } 682f605a99SJose E. Roman PetscCall(MatDenseRestoreArray(mat->A, &v)); 693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 702f605a99SJose E. Roman } 712f605a99SJose E. Roman 72*66976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRow_MPIDense(Mat A, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 73d71ae5a4SJacob Faibussowitsch { 74ba8c8a56SBarry Smith Mat_MPIDense *mat = (Mat_MPIDense *)A->data; 75d0f46423SBarry Smith PetscInt lrow, rstart = A->rmap->rstart, rend = A->rmap->rend; 76ba8c8a56SBarry Smith 77ba8c8a56SBarry Smith PetscFunctionBegin; 78aed4548fSBarry Smith PetscCheck(row >= rstart && row < rend, PETSC_COMM_SELF, PETSC_ERR_SUP, "only local rows"); 79ba8c8a56SBarry Smith lrow = row - rstart; 809566063dSJacob Faibussowitsch PetscCall(MatGetRow(mat->A, lrow, nz, (const PetscInt **)idx, (const PetscScalar **)v)); 813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 82ba8c8a56SBarry Smith } 83ba8c8a56SBarry Smith 84*66976f2fSJacob Faibussowitsch static PetscErrorCode MatRestoreRow_MPIDense(Mat A, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 85d71ae5a4SJacob Faibussowitsch { 86637a0070SStefano Zampini Mat_MPIDense *mat = (Mat_MPIDense *)A->data; 87637a0070SStefano Zampini PetscInt lrow, rstart = A->rmap->rstart, rend = A->rmap->rend; 88ba8c8a56SBarry Smith 89ba8c8a56SBarry Smith PetscFunctionBegin; 90aed4548fSBarry Smith PetscCheck(row >= rstart && row < rend, PETSC_COMM_SELF, PETSC_ERR_SUP, "only local rows"); 91637a0070SStefano Zampini lrow = row - rstart; 929566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(mat->A, lrow, nz, (const PetscInt **)idx, (const PetscScalar **)v)); 933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 94ba8c8a56SBarry Smith } 95ba8c8a56SBarry Smith 96*66976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonalBlock_MPIDense(Mat A, Mat *a) 97d71ae5a4SJacob Faibussowitsch { 980de54da6SSatish Balay Mat_MPIDense *mdn = (Mat_MPIDense *)A->data; 99d0f46423SBarry Smith PetscInt m = A->rmap->n, rstart = A->rmap->rstart; 10087828ca2SBarry Smith PetscScalar *array; 1010de54da6SSatish Balay MPI_Comm comm; 1024b6ae80fSStefano Zampini PetscBool flg; 10311bd1e4dSLisandro Dalcin Mat B; 1040de54da6SSatish Balay 1050de54da6SSatish Balay PetscFunctionBegin; 1069566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &flg)); 10728b400f6SJacob Faibussowitsch PetscCheck(flg, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only square matrices supported."); 1089566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)A, "DiagonalBlock", (PetscObject *)&B)); 109616b8fbbSStefano Zampini if (!B) { /* This should use MatDenseGetSubMatrix (not create), but we would need a call like MatRestoreDiagonalBlock */ 110a51cd166SPierre Jolivet #if PetscDefined(HAVE_CUDA) 1119566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)mdn->A, MATSEQDENSECUDA, &flg)); 11228b400f6SJacob Faibussowitsch PetscCheck(!flg, PETSC_COMM_SELF, PETSC_ERR_SUP, "Not coded for %s. Send an email to petsc-dev@mcs.anl.gov to request this feature", MATSEQDENSECUDA); 113a51cd166SPierre Jolivet #elif PetscDefined(HAVE_HIP) 11447d993e7Ssuyashtn PetscCall(PetscObjectTypeCompare((PetscObject)mdn->A, MATSEQDENSEHIP, &flg)); 11547d993e7Ssuyashtn PetscCheck(!flg, PETSC_COMM_SELF, PETSC_ERR_SUP, "Not coded for %s. Send an email to petsc-dev@mcs.anl.gov to request this feature", MATSEQDENSEHIP); 11647d993e7Ssuyashtn #endif 1179566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)(mdn->A), &comm)); 1189566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &B)); 1199566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, m, m, m, m)); 1209566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)mdn->A)->type_name)); 1219566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(mdn->A, (const PetscScalar **)&array)); 1229566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(B, array + m * rstart)); 1239566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(mdn->A, (const PetscScalar **)&array)); 1249566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)A, "DiagonalBlock", (PetscObject)B)); 12511bd1e4dSLisandro Dalcin *a = B; 1269566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 1272205254eSKarl Rupp } else *a = B; 1283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1290de54da6SSatish Balay } 1300de54da6SSatish Balay 131*66976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValues_MPIDense(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], const PetscScalar v[], InsertMode addv) 132d71ae5a4SJacob Faibussowitsch { 13339b7565bSBarry Smith Mat_MPIDense *A = (Mat_MPIDense *)mat->data; 134d0f46423SBarry Smith PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend, row; 135ace3abfcSBarry Smith PetscBool roworiented = A->roworiented; 1368965ea79SLois Curfman McInnes 1373a40ed3dSBarry Smith PetscFunctionBegin; 1388965ea79SLois Curfman McInnes for (i = 0; i < m; i++) { 1395ef9f2a5SBarry Smith if (idxm[i] < 0) continue; 14008401ef6SPierre Jolivet PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large"); 1418965ea79SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 1428965ea79SLois Curfman McInnes row = idxm[i] - rstart; 14339b7565bSBarry Smith if (roworiented) { 1449566063dSJacob Faibussowitsch PetscCall(MatSetValues(A->A, 1, &row, n, idxn, v + i * n, addv)); 1453a40ed3dSBarry Smith } else { 1468965ea79SLois Curfman McInnes for (j = 0; j < n; j++) { 1475ef9f2a5SBarry Smith if (idxn[j] < 0) continue; 14808401ef6SPierre Jolivet PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large"); 1499566063dSJacob Faibussowitsch PetscCall(MatSetValues(A->A, 1, &row, 1, &idxn[j], v + i + j * m, addv)); 15039b7565bSBarry Smith } 1518965ea79SLois Curfman McInnes } 1522205254eSKarl Rupp } else if (!A->donotstash) { 1535080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 15439b7565bSBarry Smith if (roworiented) { 1559566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, idxm[i], n, idxn, v + i * n, PETSC_FALSE)); 156d36fbae8SSatish Balay } else { 1579566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, idxm[i], n, idxn, v + i, m, PETSC_FALSE)); 15839b7565bSBarry Smith } 159b49de8d1SLois Curfman McInnes } 160b49de8d1SLois Curfman McInnes } 1613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 162b49de8d1SLois Curfman McInnes } 163b49de8d1SLois Curfman McInnes 164*66976f2fSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIDense(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 165d71ae5a4SJacob Faibussowitsch { 166b49de8d1SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 167d0f46423SBarry Smith PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend, row; 168b49de8d1SLois Curfman McInnes 1693a40ed3dSBarry Smith PetscFunctionBegin; 170b49de8d1SLois Curfman McInnes for (i = 0; i < m; i++) { 17154c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 17254c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large"); 173b49de8d1SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 174b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 175b49de8d1SLois Curfman McInnes for (j = 0; j < n; j++) { 17654c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 17754c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large"); 1789566063dSJacob Faibussowitsch PetscCall(MatGetValues(mdn->A, 1, &row, 1, &idxn[j], v + i * n + j)); 179b49de8d1SLois Curfman McInnes } 180e7e72b3dSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported"); 1818965ea79SLois Curfman McInnes } 1823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1838965ea79SLois Curfman McInnes } 1848965ea79SLois Curfman McInnes 185d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseGetLDA_MPIDense(Mat A, PetscInt *lda) 186d71ae5a4SJacob Faibussowitsch { 18749a6ff4bSBarry Smith Mat_MPIDense *a = (Mat_MPIDense *)A->data; 18849a6ff4bSBarry Smith 18949a6ff4bSBarry Smith PetscFunctionBegin; 1909566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, lda)); 1913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 19249a6ff4bSBarry Smith } 19349a6ff4bSBarry Smith 194d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseSetLDA_MPIDense(Mat A, PetscInt lda) 195d71ae5a4SJacob Faibussowitsch { 196ad16ce7aSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 19747d993e7Ssuyashtn MatType mtype = MATSEQDENSE; 198ad16ce7aSStefano Zampini 199ad16ce7aSStefano Zampini PetscFunctionBegin; 20017359960SJose E. Roman if (!a->A) { 20128b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 2029566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->rmap)); 2039566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->cmap)); 2049566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &a->A)); 2059566063dSJacob Faibussowitsch PetscCall(MatSetSizes(a->A, A->rmap->n, A->cmap->N, A->rmap->n, A->cmap->N)); 206a51cd166SPierre Jolivet #if PetscDefined(HAVE_CUDA) 20747d993e7Ssuyashtn PetscBool iscuda; 2089566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIDENSECUDA, &iscuda)); 20947d993e7Ssuyashtn if (iscuda) mtype = MATSEQDENSECUDA; 210a51cd166SPierre Jolivet #elif PetscDefined(HAVE_HIP) 21147d993e7Ssuyashtn PetscBool iship; 21247d993e7Ssuyashtn PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIDENSEHIP, &iship)); 21347d993e7Ssuyashtn if (iship) mtype = MATSEQDENSEHIP; 21447d993e7Ssuyashtn #endif 21547d993e7Ssuyashtn PetscCall(MatSetType(a->A, mtype)); 21617359960SJose E. Roman } 2179566063dSJacob Faibussowitsch PetscCall(MatDenseSetLDA(a->A, lda)); 2183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 219ad16ce7aSStefano Zampini } 220ad16ce7aSStefano Zampini 221d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseGetArray_MPIDense(Mat A, PetscScalar **array) 222d71ae5a4SJacob Faibussowitsch { 223ff14e315SSatish Balay Mat_MPIDense *a = (Mat_MPIDense *)A->data; 224ff14e315SSatish Balay 2253a40ed3dSBarry Smith PetscFunctionBegin; 22628b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 2279566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(a->A, array)); 2283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 229ff14e315SSatish Balay } 230ff14e315SSatish Balay 231d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseGetArrayRead_MPIDense(Mat A, const PetscScalar **array) 232d71ae5a4SJacob Faibussowitsch { 2338572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense *)A->data; 2348572280aSBarry Smith 2358572280aSBarry Smith PetscFunctionBegin; 23628b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 2379566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A, array)); 2383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2398572280aSBarry Smith } 2408572280aSBarry Smith 241d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseGetArrayWrite_MPIDense(Mat A, PetscScalar **array) 242d71ae5a4SJacob Faibussowitsch { 2436947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 2446947451fSStefano Zampini 2456947451fSStefano Zampini PetscFunctionBegin; 24628b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 2479566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(a->A, array)); 2483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2496947451fSStefano Zampini } 2506947451fSStefano Zampini 251d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDensePlaceArray_MPIDense(Mat A, const PetscScalar *array) 252d71ae5a4SJacob Faibussowitsch { 253d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense *)A->data; 254d3042a70SBarry Smith 255d3042a70SBarry Smith PetscFunctionBegin; 25628b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 25728b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 2589566063dSJacob Faibussowitsch PetscCall(MatDensePlaceArray(a->A, array)); 2593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 260d3042a70SBarry Smith } 261d3042a70SBarry Smith 262d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseResetArray_MPIDense(Mat A) 263d71ae5a4SJacob Faibussowitsch { 264d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense *)A->data; 265d3042a70SBarry Smith 266d3042a70SBarry Smith PetscFunctionBegin; 26728b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 26828b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 2699566063dSJacob Faibussowitsch PetscCall(MatDenseResetArray(a->A)); 2703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 271d3042a70SBarry Smith } 272d3042a70SBarry Smith 273d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseReplaceArray_MPIDense(Mat A, const PetscScalar *array) 274d71ae5a4SJacob Faibussowitsch { 275d5ea218eSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 276d5ea218eSStefano Zampini 277d5ea218eSStefano Zampini PetscFunctionBegin; 27828b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 27928b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 2809566063dSJacob Faibussowitsch PetscCall(MatDenseReplaceArray(a->A, array)); 2813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 282d5ea218eSStefano Zampini } 283d5ea218eSStefano Zampini 284d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrix_MPIDense(Mat A, IS isrow, IS iscol, MatReuse scall, Mat *B) 285d71ae5a4SJacob Faibussowitsch { 286ca3fa75bSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense *)A->data, *newmatd; 287637a0070SStefano Zampini PetscInt lda, i, j, rstart, rend, nrows, ncols, Ncols, nlrows, nlcols; 2885d0c19d7SBarry Smith const PetscInt *irow, *icol; 289637a0070SStefano Zampini const PetscScalar *v; 290637a0070SStefano Zampini PetscScalar *bv; 291ca3fa75bSLois Curfman McInnes Mat newmat; 2924aa3045dSJed Brown IS iscol_local; 29342a884f0SBarry Smith MPI_Comm comm_is, comm_mat; 294ca3fa75bSLois Curfman McInnes 295ca3fa75bSLois Curfman McInnes PetscFunctionBegin; 2969566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm_mat)); 2979566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)iscol, &comm_is)); 29808401ef6SPierre Jolivet PetscCheck(comm_mat == comm_is, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "IS communicator must match matrix communicator"); 29942a884f0SBarry Smith 3009566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol, &iscol_local)); 3019566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isrow, &irow)); 3029566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_local, &icol)); 3039566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &nrows)); 3049566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &ncols)); 3059566063dSJacob Faibussowitsch PetscCall(ISGetSize(iscol, &Ncols)); /* global number of columns, size of iscol_local */ 306ca3fa75bSLois Curfman McInnes 307ca3fa75bSLois Curfman McInnes /* No parallel redistribution currently supported! Should really check each index set 308da81f932SPierre Jolivet to confirm that it is OK. ... Currently supports only submatrix same partitioning as 3097eba5e9cSLois Curfman McInnes original matrix! */ 310ca3fa75bSLois Curfman McInnes 3119566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, &nlrows, &nlcols)); 3129566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, &rend)); 313ca3fa75bSLois Curfman McInnes 314ca3fa75bSLois Curfman McInnes /* Check submatrix call */ 315ca3fa75bSLois Curfman McInnes if (scall == MAT_REUSE_MATRIX) { 316e32f2f54SBarry Smith /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */ 3177eba5e9cSLois Curfman McInnes /* Really need to test rows and column sizes! */ 318ca3fa75bSLois Curfman McInnes newmat = *B; 319ca3fa75bSLois Curfman McInnes } else { 320ca3fa75bSLois Curfman McInnes /* Create and fill new matrix */ 3219566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &newmat)); 3229566063dSJacob Faibussowitsch PetscCall(MatSetSizes(newmat, nrows, ncols, PETSC_DECIDE, Ncols)); 3239566063dSJacob Faibussowitsch PetscCall(MatSetType(newmat, ((PetscObject)A)->type_name)); 3249566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(newmat, NULL)); 325ca3fa75bSLois Curfman McInnes } 326ca3fa75bSLois Curfman McInnes 327ca3fa75bSLois Curfman McInnes /* Now extract the data pointers and do the copy, column at a time */ 328ca3fa75bSLois Curfman McInnes newmatd = (Mat_MPIDense *)newmat->data; 3299566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(newmatd->A, &bv)); 3309566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(mat->A, &v)); 3319566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(mat->A, &lda)); 3324aa3045dSJed Brown for (i = 0; i < Ncols; i++) { 333637a0070SStefano Zampini const PetscScalar *av = v + lda * icol[i]; 334ad540459SPierre Jolivet for (j = 0; j < nrows; j++) *bv++ = av[irow[j] - rstart]; 335ca3fa75bSLois Curfman McInnes } 3369566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(mat->A, &v)); 3379566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(newmatd->A, &bv)); 338ca3fa75bSLois Curfman McInnes 339ca3fa75bSLois Curfman McInnes /* Assemble the matrices so that the correct flags are set */ 3409566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(newmat, MAT_FINAL_ASSEMBLY)); 3419566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(newmat, MAT_FINAL_ASSEMBLY)); 342ca3fa75bSLois Curfman McInnes 343ca3fa75bSLois Curfman McInnes /* Free work space */ 3449566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isrow, &irow)); 3459566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_local, &icol)); 3469566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 347ca3fa75bSLois Curfman McInnes *B = newmat; 3483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 349ca3fa75bSLois Curfman McInnes } 350ca3fa75bSLois Curfman McInnes 351*66976f2fSJacob Faibussowitsch static PetscErrorCode MatDenseRestoreArray_MPIDense(Mat A, PetscScalar **array) 352d71ae5a4SJacob Faibussowitsch { 35373a71a0fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense *)A->data; 35473a71a0fSBarry Smith 3553a40ed3dSBarry Smith PetscFunctionBegin; 3569566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(a->A, array)); 3573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 358ff14e315SSatish Balay } 359ff14e315SSatish Balay 360*66976f2fSJacob Faibussowitsch static PetscErrorCode MatDenseRestoreArrayRead_MPIDense(Mat A, const PetscScalar **array) 361d71ae5a4SJacob Faibussowitsch { 3628572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense *)A->data; 3638572280aSBarry Smith 3648572280aSBarry Smith PetscFunctionBegin; 3659566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A, array)); 3663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3678572280aSBarry Smith } 3688572280aSBarry Smith 369*66976f2fSJacob Faibussowitsch static PetscErrorCode MatDenseRestoreArrayWrite_MPIDense(Mat A, PetscScalar **array) 370d71ae5a4SJacob Faibussowitsch { 3716947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 3726947451fSStefano Zampini 3736947451fSStefano Zampini PetscFunctionBegin; 3749566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(a->A, array)); 3753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3766947451fSStefano Zampini } 3776947451fSStefano Zampini 378*66976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat, MatAssemblyType mode) 379d71ae5a4SJacob Faibussowitsch { 38039ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 38113f74950SBarry Smith PetscInt nstash, reallocs; 3828965ea79SLois Curfman McInnes 3833a40ed3dSBarry Smith PetscFunctionBegin; 3843ba16761SJacob Faibussowitsch if (mdn->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS); 3858965ea79SLois Curfman McInnes 3869566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 3879566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 3889566063dSJacob Faibussowitsch PetscCall(PetscInfo(mdn->A, "Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 3893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3908965ea79SLois Curfman McInnes } 3918965ea79SLois Curfman McInnes 392*66976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat, MatAssemblyType mode) 393d71ae5a4SJacob Faibussowitsch { 39439ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 39513f74950SBarry Smith PetscInt i, *row, *col, flg, j, rstart, ncols; 39613f74950SBarry Smith PetscMPIInt n; 39787828ca2SBarry Smith PetscScalar *val; 3988965ea79SLois Curfman McInnes 3993a40ed3dSBarry Smith PetscFunctionBegin; 400910cf402Sprj- if (!mdn->donotstash && !mat->nooffprocentries) { 4018965ea79SLois Curfman McInnes /* wait on receives */ 4027ef1d9bdSSatish Balay while (1) { 4039566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 4047ef1d9bdSSatish Balay if (!flg) break; 4058965ea79SLois Curfman McInnes 4067ef1d9bdSSatish Balay for (i = 0; i < n;) { 4077ef1d9bdSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 4082205254eSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 4092205254eSKarl Rupp if (row[j] != rstart) break; 4102205254eSKarl Rupp } 4117ef1d9bdSSatish Balay if (j < n) ncols = j - i; 4127ef1d9bdSSatish Balay else ncols = n - i; 4137ef1d9bdSSatish Balay /* Now assemble all these values with a single function call */ 4149566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIDense(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode)); 4157ef1d9bdSSatish Balay i = j; 4168965ea79SLois Curfman McInnes } 4177ef1d9bdSSatish Balay } 4189566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 419910cf402Sprj- } 4208965ea79SLois Curfman McInnes 4219566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mdn->A, mode)); 4229566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mdn->A, mode)); 4233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4248965ea79SLois Curfman McInnes } 4258965ea79SLois Curfman McInnes 426*66976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIDense(Mat A) 427d71ae5a4SJacob Faibussowitsch { 42839ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense *)A->data; 4293a40ed3dSBarry Smith 4303a40ed3dSBarry Smith PetscFunctionBegin; 4319566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 4323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4338965ea79SLois Curfman McInnes } 4348965ea79SLois Curfman McInnes 435*66976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIDense(Mat A, PetscInt n, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 436d71ae5a4SJacob Faibussowitsch { 43739ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense *)A->data; 438637a0070SStefano Zampini PetscInt i, len, *lrows; 439637a0070SStefano Zampini 440637a0070SStefano Zampini PetscFunctionBegin; 441637a0070SStefano Zampini /* get locally owned rows */ 4429566063dSJacob Faibussowitsch PetscCall(PetscLayoutMapLocal(A->rmap, n, rows, &len, &lrows, NULL)); 443637a0070SStefano Zampini /* fix right hand side if needed */ 444637a0070SStefano Zampini if (x && b) { 44597b48c8fSBarry Smith const PetscScalar *xx; 44697b48c8fSBarry Smith PetscScalar *bb; 4478965ea79SLois Curfman McInnes 4489566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 4499566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(b, &bb)); 450637a0070SStefano Zampini for (i = 0; i < len; ++i) bb[lrows[i]] = diag * xx[lrows[i]]; 4519566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 4529566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(b, &bb)); 45397b48c8fSBarry Smith } 4549566063dSJacob Faibussowitsch PetscCall(MatZeroRows(l->A, len, lrows, 0.0, NULL, NULL)); 455e2eb51b1SBarry Smith if (diag != 0.0) { 456637a0070SStefano Zampini Vec d; 457b9679d65SBarry Smith 4589566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(A, NULL, &d)); 4599566063dSJacob Faibussowitsch PetscCall(VecSet(d, diag)); 4609566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet(A, d, INSERT_VALUES)); 4619566063dSJacob Faibussowitsch PetscCall(VecDestroy(&d)); 462b9679d65SBarry Smith } 4639566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 4643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4658965ea79SLois Curfman McInnes } 4668965ea79SLois Curfman McInnes 467cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMult_SeqDense(Mat, Vec, Vec); 468cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultAdd_SeqDense(Mat, Vec, Vec, Vec); 469cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTranspose_SeqDense(Mat, Vec, Vec); 470cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTransposeAdd_SeqDense(Mat, Vec, Vec, Vec); 471cc2e6a90SBarry Smith 472*66976f2fSJacob Faibussowitsch static PetscErrorCode MatMult_MPIDense(Mat mat, Vec xx, Vec yy) 473d71ae5a4SJacob Faibussowitsch { 47439ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 475637a0070SStefano Zampini const PetscScalar *ax; 476637a0070SStefano Zampini PetscScalar *ay; 477d0295fc0SJunchao Zhang PetscMemType axmtype, aymtype; 478c456f294SBarry Smith 4793a40ed3dSBarry Smith PetscFunctionBegin; 4806f08ad05SPierre Jolivet if (!mdn->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(mat)); 4819566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(xx, &ax, &axmtype)); 4829566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(mdn->lvec, &ay, &aymtype)); 4839566063dSJacob Faibussowitsch PetscCall(PetscSFBcastWithMemTypeBegin(mdn->Mvctx, MPIU_SCALAR, axmtype, ax, aymtype, ay, MPI_REPLACE)); 4849566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(mdn->Mvctx, MPIU_SCALAR, ax, ay, MPI_REPLACE)); 4859566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(mdn->lvec, &ay)); 4869566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(xx, &ax)); 4879566063dSJacob Faibussowitsch PetscCall((*mdn->A->ops->mult)(mdn->A, mdn->lvec, yy)); 4883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4898965ea79SLois Curfman McInnes } 4908965ea79SLois Curfman McInnes 491*66976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIDense(Mat mat, Vec xx, Vec yy, Vec zz) 492d71ae5a4SJacob Faibussowitsch { 49339ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 494637a0070SStefano Zampini const PetscScalar *ax; 495637a0070SStefano Zampini PetscScalar *ay; 496d0295fc0SJunchao Zhang PetscMemType axmtype, aymtype; 497c456f294SBarry Smith 4983a40ed3dSBarry Smith PetscFunctionBegin; 4996f08ad05SPierre Jolivet if (!mdn->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(mat)); 5009566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(xx, &ax, &axmtype)); 5019566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(mdn->lvec, &ay, &aymtype)); 5029566063dSJacob Faibussowitsch PetscCall(PetscSFBcastWithMemTypeBegin(mdn->Mvctx, MPIU_SCALAR, axmtype, ax, aymtype, ay, MPI_REPLACE)); 5039566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(mdn->Mvctx, MPIU_SCALAR, ax, ay, MPI_REPLACE)); 5049566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(mdn->lvec, &ay)); 5059566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(xx, &ax)); 5069566063dSJacob Faibussowitsch PetscCall((*mdn->A->ops->multadd)(mdn->A, mdn->lvec, yy, zz)); 5073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5088965ea79SLois Curfman McInnes } 5098965ea79SLois Curfman McInnes 510*66976f2fSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIDense(Mat A, Vec xx, Vec yy) 511d71ae5a4SJacob Faibussowitsch { 512096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense *)A->data; 513637a0070SStefano Zampini const PetscScalar *ax; 514637a0070SStefano Zampini PetscScalar *ay; 515d0295fc0SJunchao Zhang PetscMemType axmtype, aymtype; 516096963f5SLois Curfman McInnes 5173a40ed3dSBarry Smith PetscFunctionBegin; 5186f08ad05SPierre Jolivet if (!a->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); 5199566063dSJacob Faibussowitsch PetscCall(VecSet(yy, 0.0)); 5209566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A, xx, a->lvec)); 5219566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(a->lvec, &ax, &axmtype)); 5229566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(yy, &ay, &aymtype)); 5239566063dSJacob Faibussowitsch PetscCall(PetscSFReduceWithMemTypeBegin(a->Mvctx, MPIU_SCALAR, axmtype, ax, aymtype, ay, MPIU_SUM)); 5249566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(a->Mvctx, MPIU_SCALAR, ax, ay, MPIU_SUM)); 5259566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(a->lvec, &ax)); 5269566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(yy, &ay)); 5273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 528096963f5SLois Curfman McInnes } 529096963f5SLois Curfman McInnes 530*66976f2fSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A, Vec xx, Vec yy, Vec zz) 531d71ae5a4SJacob Faibussowitsch { 532096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense *)A->data; 533637a0070SStefano Zampini const PetscScalar *ax; 534637a0070SStefano Zampini PetscScalar *ay; 535d0295fc0SJunchao Zhang PetscMemType axmtype, aymtype; 536096963f5SLois Curfman McInnes 5373a40ed3dSBarry Smith PetscFunctionBegin; 5386f08ad05SPierre Jolivet if (!a->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); 5399566063dSJacob Faibussowitsch PetscCall(VecCopy(yy, zz)); 5409566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A, xx, a->lvec)); 5419566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(a->lvec, &ax, &axmtype)); 5429566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(zz, &ay, &aymtype)); 5439566063dSJacob Faibussowitsch PetscCall(PetscSFReduceWithMemTypeBegin(a->Mvctx, MPIU_SCALAR, axmtype, ax, aymtype, ay, MPIU_SUM)); 5449566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(a->Mvctx, MPIU_SCALAR, ax, ay, MPIU_SUM)); 5459566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(a->lvec, &ax)); 5469566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(zz, &ay)); 5473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 548096963f5SLois Curfman McInnes } 549096963f5SLois Curfman McInnes 550d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetDiagonal_MPIDense(Mat A, Vec v) 551d71ae5a4SJacob Faibussowitsch { 55239ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense *)A->data; 55379560b15SJacob Faibussowitsch PetscInt lda, len, i, nl, ng, m = A->rmap->n, radd; 55479560b15SJacob Faibussowitsch PetscScalar *x; 555637a0070SStefano Zampini const PetscScalar *av; 556ed3cc1f0SBarry Smith 5573a40ed3dSBarry Smith PetscFunctionBegin; 5589566063dSJacob Faibussowitsch PetscCall(VecGetArray(v, &x)); 55979560b15SJacob Faibussowitsch PetscCall(VecGetSize(v, &ng)); 56079560b15SJacob Faibussowitsch PetscCheck(ng == A->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Nonconforming mat and vec"); 56179560b15SJacob Faibussowitsch PetscCall(VecGetLocalSize(v, &nl)); 562d0f46423SBarry Smith len = PetscMin(a->A->rmap->n, a->A->cmap->n); 563d0f46423SBarry Smith radd = A->rmap->rstart * m; 5649566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A, &av)); 5659566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &lda)); 566ad540459SPierre Jolivet for (i = 0; i < len; i++) x[i] = av[radd + i * lda + i]; 5679566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A, &av)); 56879560b15SJacob Faibussowitsch PetscCall(PetscArrayzero(x + i, nl - i)); 5699566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v, &x)); 5703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5718965ea79SLois Curfman McInnes } 5728965ea79SLois Curfman McInnes 573*66976f2fSJacob Faibussowitsch static PetscErrorCode MatDestroy_MPIDense(Mat mat) 574d71ae5a4SJacob Faibussowitsch { 5753501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 576ed3cc1f0SBarry Smith 5773a40ed3dSBarry Smith PetscFunctionBegin; 5783ba16761SJacob Faibussowitsch PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N)); 5799566063dSJacob Faibussowitsch PetscCall(MatStashDestroy_Private(&mat->stash)); 58028b400f6SJacob Faibussowitsch PetscCheck(!mdn->vecinuse, PetscObjectComm((PetscObject)mat), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 58128b400f6SJacob Faibussowitsch PetscCheck(!mdn->matinuse, PetscObjectComm((PetscObject)mat), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 5829566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mdn->A)); 5839566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mdn->lvec)); 5849566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&mdn->Mvctx)); 5859566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mdn->cvec)); 5869566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mdn->cmat)); 58701b82886SBarry Smith 5889566063dSJacob Faibussowitsch PetscCall(PetscFree(mat->data)); 5899566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 5908baccfbdSHong Zhang 5919566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetLDA_C", NULL)); 5929566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseSetLDA_C", NULL)); 5939566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetArray_C", NULL)); 5949566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreArray_C", NULL)); 5959566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetArrayRead_C", NULL)); 5969566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreArrayRead_C", NULL)); 5979566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetArrayWrite_C", NULL)); 5989566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreArrayWrite_C", NULL)); 5999566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDensePlaceArray_C", NULL)); 6009566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseResetArray_C", NULL)); 6019566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseReplaceArray_C", NULL)); 6029566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpidense_C", NULL)); 6039566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_mpiaij_C", NULL)); 6048baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 6059566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_elemental_C", NULL)); 6068baccfbdSHong Zhang #endif 607d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 6089566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_scalapack_C", NULL)); 609d24d4204SJose E. Roman #endif 6109566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIDenseSetPreallocation_C", NULL)); 6119566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpidense_C", NULL)); 6129566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidense_mpiaij_C", NULL)); 6136718818eSStefano Zampini #if defined(PETSC_HAVE_CUDA) 6149566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaijcusparse_mpidense_C", NULL)); 6159566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidense_mpiaijcusparse_C", NULL)); 6162e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_mpidensecuda_C", NULL)); 6172e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidensecuda_mpidense_C", NULL)); 6182e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpidensecuda_C", NULL)); 6192e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaijcusparse_mpidensecuda_C", NULL)); 6202e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidensecuda_mpiaij_C", NULL)); 6212e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidensecuda_mpiaijcusparse_C", NULL)); 6222e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDAGetArray_C", NULL)); 6232e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDAGetArrayRead_C", NULL)); 6242e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDAGetArrayWrite_C", NULL)); 6252e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDARestoreArray_C", NULL)); 6262e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDARestoreArrayRead_C", NULL)); 6272e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDARestoreArrayWrite_C", NULL)); 6282e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDAPlaceArray_C", NULL)); 6292e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDAResetArray_C", NULL)); 6302e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDAReplaceArray_C", NULL)); 6313d9668e3SJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDASetPreallocation_C", NULL)); 6326718818eSStefano Zampini #endif 63347d993e7Ssuyashtn #if defined(PETSC_HAVE_HIP) 63447d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaijhipsparse_mpidense_C", NULL)); 63547d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidense_mpiaijhipsparse_C", NULL)); 63647d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_mpidensehip_C", NULL)); 63747d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidensehip_mpidense_C", NULL)); 63847d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpidensehip_C", NULL)); 63947d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaijhipsparse_mpidensehip_C", NULL)); 64047d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidensehip_mpiaij_C", NULL)); 64147d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidensehip_mpiaijhipsparse_C", NULL)); 64247d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPGetArray_C", NULL)); 64347d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPGetArrayRead_C", NULL)); 64447d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPGetArrayWrite_C", NULL)); 64547d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPRestoreArray_C", NULL)); 64647d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPRestoreArrayRead_C", NULL)); 64747d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPRestoreArrayWrite_C", NULL)); 64847d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPPlaceArray_C", NULL)); 64947d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPResetArray_C", NULL)); 65047d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPReplaceArray_C", NULL)); 6513d9668e3SJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPSetPreallocation_C", NULL)); 65247d993e7Ssuyashtn #endif 6539566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumn_C", NULL)); 6549566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumn_C", NULL)); 6559566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVec_C", NULL)); 6569566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVec_C", NULL)); 6579566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVecRead_C", NULL)); 6589566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVecRead_C", NULL)); 6599566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVecWrite_C", NULL)); 6609566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVecWrite_C", NULL)); 6619566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetSubMatrix_C", NULL)); 6629566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreSubMatrix_C", NULL)); 663f8103e6bSStefano Zampini 664f8103e6bSStefano Zampini PetscCall(PetscObjectCompose((PetscObject)mat, "DiagonalBlock", NULL)); 6653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6668965ea79SLois Curfman McInnes } 66739ddd567SLois Curfman McInnes 66852c5f739Sprj- PETSC_INTERN PetscErrorCode MatView_SeqDense(Mat, PetscViewer); 66952c5f739Sprj- 6709804daf3SBarry Smith #include <petscdraw.h> 671d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) 672d71ae5a4SJacob Faibussowitsch { 67339ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 674616b8fbbSStefano Zampini PetscMPIInt rank; 67519fd82e9SBarry Smith PetscViewerType vtype; 676ace3abfcSBarry Smith PetscBool iascii, isdraw; 677b0a32e0cSBarry Smith PetscViewer sviewer; 678f3ef73ceSBarry Smith PetscViewerFormat format; 6798965ea79SLois Curfman McInnes 6803a40ed3dSBarry Smith PetscFunctionBegin; 6819566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 6829566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 6839566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 68432077d6dSBarry Smith if (iascii) { 6859566063dSJacob Faibussowitsch PetscCall(PetscViewerGetType(viewer, &vtype)); 6869566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 687456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 6884e220ebcSLois Curfman McInnes MatInfo info; 6899566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 6909566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 6919371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, " [%d] local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %" PetscInt_FMT " \n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 6929371c9d4SSatish Balay (PetscInt)info.memory)); 6939566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 6949566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 6956f08ad05SPierre Jolivet if (mdn->Mvctx) PetscCall(PetscSFView(mdn->Mvctx, viewer)); 6963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 697fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 6983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6998965ea79SLois Curfman McInnes } 700f1af5d2fSBarry Smith } else if (isdraw) { 701b0a32e0cSBarry Smith PetscDraw draw; 702ace3abfcSBarry Smith PetscBool isnull; 703f1af5d2fSBarry Smith 7049566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 7059566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 7063ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 707f1af5d2fSBarry Smith } 70877ed5343SBarry Smith 7097da1fb6eSBarry Smith { 7108965ea79SLois Curfman McInnes /* assemble the entire matrix onto first processor. */ 7118965ea79SLois Curfman McInnes Mat A; 712d0f46423SBarry Smith PetscInt M = mat->rmap->N, N = mat->cmap->N, m, row, i, nz; 713ba8c8a56SBarry Smith PetscInt *cols; 714ba8c8a56SBarry Smith PetscScalar *vals; 7158965ea79SLois Curfman McInnes 7169566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A)); 717dd400576SPatrick Sanan if (rank == 0) { 7189566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, M, N, M, N)); 7193a40ed3dSBarry Smith } else { 7209566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, 0, 0, M, N)); 7218965ea79SLois Curfman McInnes } 7227adad957SLisandro Dalcin /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */ 7239566063dSJacob Faibussowitsch PetscCall(MatSetType(A, MATMPIDENSE)); 7249566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(A, NULL)); 7258965ea79SLois Curfman McInnes 72639ddd567SLois Curfman McInnes /* Copy the matrix ... This isn't the most efficient means, 72739ddd567SLois Curfman McInnes but it's quick for now */ 72851022da4SBarry Smith A->insertmode = INSERT_VALUES; 7292205254eSKarl Rupp 7302205254eSKarl Rupp row = mat->rmap->rstart; 7312205254eSKarl Rupp m = mdn->A->rmap->n; 7328965ea79SLois Curfman McInnes for (i = 0; i < m; i++) { 7339566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIDense(mat, row, &nz, &cols, &vals)); 7349566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIDense(A, 1, &row, nz, cols, vals, INSERT_VALUES)); 7359566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIDense(mat, row, &nz, &cols, &vals)); 73639ddd567SLois Curfman McInnes row++; 7378965ea79SLois Curfman McInnes } 7388965ea79SLois Curfman McInnes 7399566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 7409566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 7419566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 742dd400576SPatrick Sanan if (rank == 0) { 7439566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)((Mat_MPIDense *)(A->data))->A, ((PetscObject)mat)->name)); 7449566063dSJacob Faibussowitsch PetscCall(MatView_SeqDense(((Mat_MPIDense *)(A->data))->A, sviewer)); 7458965ea79SLois Curfman McInnes } 7469566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 7479566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 7489566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 7498965ea79SLois Curfman McInnes } 7503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7518965ea79SLois Curfman McInnes } 7528965ea79SLois Curfman McInnes 753*66976f2fSJacob Faibussowitsch static PetscErrorCode MatView_MPIDense(Mat mat, PetscViewer viewer) 754d71ae5a4SJacob Faibussowitsch { 755ace3abfcSBarry Smith PetscBool iascii, isbinary, isdraw, issocket; 7568965ea79SLois Curfman McInnes 757433994e6SBarry Smith PetscFunctionBegin; 7589566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 7599566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 7609566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 7619566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 7620f5bd95cSBarry Smith 76332077d6dSBarry Smith if (iascii || issocket || isdraw) { 7649566063dSJacob Faibussowitsch PetscCall(MatView_MPIDense_ASCIIorDraworSocket(mat, viewer)); 7651baa6e33SBarry Smith } else if (isbinary) PetscCall(MatView_Dense_Binary(mat, viewer)); 7663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7678965ea79SLois Curfman McInnes } 7688965ea79SLois Curfman McInnes 769*66976f2fSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIDense(Mat A, MatInfoType flag, MatInfo *info) 770d71ae5a4SJacob Faibussowitsch { 7713501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense *)A->data; 7723501a2bdSLois Curfman McInnes Mat mdn = mat->A; 7733966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 7748965ea79SLois Curfman McInnes 7753a40ed3dSBarry Smith PetscFunctionBegin; 7764e220ebcSLois Curfman McInnes info->block_size = 1.0; 7772205254eSKarl Rupp 7789566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mdn, MAT_LOCAL, info)); 7792205254eSKarl Rupp 7809371c9d4SSatish Balay isend[0] = info->nz_used; 7819371c9d4SSatish Balay isend[1] = info->nz_allocated; 7829371c9d4SSatish Balay isend[2] = info->nz_unneeded; 7839371c9d4SSatish Balay isend[3] = info->memory; 7849371c9d4SSatish Balay isend[4] = info->mallocs; 7858965ea79SLois Curfman McInnes if (flag == MAT_LOCAL) { 7864e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 7874e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 7884e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 7894e220ebcSLois Curfman McInnes info->memory = isend[3]; 7904e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 7918965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 7921c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)A))); 7932205254eSKarl Rupp 7944e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7954e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7964e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7974e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7984e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7998965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 8001c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)A))); 8012205254eSKarl Rupp 8024e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 8034e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 8044e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 8054e220ebcSLois Curfman McInnes info->memory = irecv[3]; 8064e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 8078965ea79SLois Curfman McInnes } 8084e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 8094e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 8104e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 8113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8128965ea79SLois Curfman McInnes } 8138965ea79SLois Curfman McInnes 814*66976f2fSJacob Faibussowitsch static PetscErrorCode MatSetOption_MPIDense(Mat A, MatOption op, PetscBool flg) 815d71ae5a4SJacob Faibussowitsch { 81639ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense *)A->data; 8178965ea79SLois Curfman McInnes 8183a40ed3dSBarry Smith PetscFunctionBegin; 81912c028f9SKris Buschelman switch (op) { 820512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 82112c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 82212c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 82343674050SBarry Smith MatCheckPreallocated(A, 1); 8249566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 82512c028f9SKris Buschelman break; 82612c028f9SKris Buschelman case MAT_ROW_ORIENTED: 82743674050SBarry Smith MatCheckPreallocated(A, 1); 8284e0d8c25SBarry Smith a->roworiented = flg; 8299566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 83012c028f9SKris Buschelman break; 8318c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 83213fa8e87SLisandro Dalcin case MAT_KEEP_NONZERO_PATTERN: 83312c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 834d71ae5a4SJacob Faibussowitsch case MAT_SORTED_FULL: 835d71ae5a4SJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 836d71ae5a4SJacob Faibussowitsch break; 837d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES: 838d71ae5a4SJacob Faibussowitsch a->donotstash = flg; 839d71ae5a4SJacob Faibussowitsch break; 84077e54ba9SKris Buschelman case MAT_SYMMETRIC: 84177e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 8429a4540c5SBarry Smith case MAT_HERMITIAN: 8439a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 844b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 845b94d7dedSBarry Smith case MAT_SPD: 846600fe468SBarry Smith case MAT_IGNORE_LOWER_TRIANGULAR: 8475d7aebe8SStefano Zampini case MAT_IGNORE_ZERO_ENTRIES: 848b94d7dedSBarry Smith case MAT_SPD_ETERNAL: 849b94d7dedSBarry Smith /* if the diagonal matrix is square it inherits some of the properties above */ 8509566063dSJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 85177e54ba9SKris Buschelman break; 852d71ae5a4SJacob Faibussowitsch default: 853d71ae5a4SJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "unknown option %s", MatOptions[op]); 8543a40ed3dSBarry Smith } 8553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8568965ea79SLois Curfman McInnes } 8578965ea79SLois Curfman McInnes 858*66976f2fSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIDense(Mat A, Vec ll, Vec rr) 859d71ae5a4SJacob Faibussowitsch { 8605b2fa520SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)A->data; 861637a0070SStefano Zampini const PetscScalar *l; 862637a0070SStefano Zampini PetscScalar x, *v, *vv, *r; 863637a0070SStefano Zampini PetscInt i, j, s2a, s3a, s2, s3, m = mdn->A->rmap->n, n = mdn->A->cmap->n, lda; 8645b2fa520SLois Curfman McInnes 8655b2fa520SLois Curfman McInnes PetscFunctionBegin; 8669566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(mdn->A, &vv)); 8679566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(mdn->A, &lda)); 8689566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, &s2, &s3)); 8695b2fa520SLois Curfman McInnes if (ll) { 8709566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll, &s2a)); 87108401ef6SPierre Jolivet PetscCheck(s2a == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Left scaling vector non-conforming local size, %" PetscInt_FMT " != %" PetscInt_FMT, s2a, s2); 8729566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(ll, &l)); 8735b2fa520SLois Curfman McInnes for (i = 0; i < m; i++) { 8745b2fa520SLois Curfman McInnes x = l[i]; 875637a0070SStefano Zampini v = vv + i; 8769371c9d4SSatish Balay for (j = 0; j < n; j++) { 8779371c9d4SSatish Balay (*v) *= x; 8789371c9d4SSatish Balay v += lda; 8799371c9d4SSatish Balay } 8805b2fa520SLois Curfman McInnes } 8819566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(ll, &l)); 8829566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(1.0 * n * m)); 8835b2fa520SLois Curfman McInnes } 8845b2fa520SLois Curfman McInnes if (rr) { 885637a0070SStefano Zampini const PetscScalar *ar; 886637a0070SStefano Zampini 8879566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &s3a)); 88808401ef6SPierre Jolivet PetscCheck(s3a == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Right scaling vec non-conforming local size, %" PetscInt_FMT " != %" PetscInt_FMT ".", s3a, s3); 8899566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(rr, &ar)); 8906f08ad05SPierre Jolivet if (!mdn->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); 8919566063dSJacob Faibussowitsch PetscCall(VecGetArray(mdn->lvec, &r)); 8929566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(mdn->Mvctx, MPIU_SCALAR, ar, r, MPI_REPLACE)); 8939566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(mdn->Mvctx, MPIU_SCALAR, ar, r, MPI_REPLACE)); 8949566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(rr, &ar)); 8955b2fa520SLois Curfman McInnes for (i = 0; i < n; i++) { 8965b2fa520SLois Curfman McInnes x = r[i]; 897637a0070SStefano Zampini v = vv + i * lda; 8982205254eSKarl Rupp for (j = 0; j < m; j++) (*v++) *= x; 8995b2fa520SLois Curfman McInnes } 9009566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mdn->lvec, &r)); 9019566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(1.0 * n * m)); 9025b2fa520SLois Curfman McInnes } 9039566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(mdn->A, &vv)); 9043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9055b2fa520SLois Curfman McInnes } 9065b2fa520SLois Curfman McInnes 907*66976f2fSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIDense(Mat A, NormType type, PetscReal *nrm) 908d71ae5a4SJacob Faibussowitsch { 9093501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)A->data; 91013f74950SBarry Smith PetscInt i, j; 911616b8fbbSStefano Zampini PetscMPIInt size; 912329f5518SBarry Smith PetscReal sum = 0.0; 913637a0070SStefano Zampini const PetscScalar *av, *v; 9143501a2bdSLois Curfman McInnes 9153a40ed3dSBarry Smith PetscFunctionBegin; 9169566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(mdn->A, &av)); 917637a0070SStefano Zampini v = av; 9189566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 919616b8fbbSStefano Zampini if (size == 1) { 9209566063dSJacob Faibussowitsch PetscCall(MatNorm(mdn->A, type, nrm)); 9213501a2bdSLois Curfman McInnes } else { 9223501a2bdSLois Curfman McInnes if (type == NORM_FROBENIUS) { 923d0f46423SBarry Smith for (i = 0; i < mdn->A->cmap->n * mdn->A->rmap->n; i++) { 9249371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 9259371c9d4SSatish Balay v++; 9263501a2bdSLois Curfman McInnes } 9271c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A))); 9288f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 9299566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * mdn->A->cmap->n * mdn->A->rmap->n)); 9303a40ed3dSBarry Smith } else if (type == NORM_1) { 931329f5518SBarry Smith PetscReal *tmp, *tmp2; 9329566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(A->cmap->N, &tmp, A->cmap->N, &tmp2)); 933064f8208SBarry Smith *nrm = 0.0; 934637a0070SStefano Zampini v = av; 935d0f46423SBarry Smith for (j = 0; j < mdn->A->cmap->n; j++) { 936d0f46423SBarry Smith for (i = 0; i < mdn->A->rmap->n; i++) { 9379371c9d4SSatish Balay tmp[j] += PetscAbsScalar(*v); 9389371c9d4SSatish Balay v++; 9393501a2bdSLois Curfman McInnes } 9403501a2bdSLois Curfman McInnes } 9411c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(tmp, tmp2, A->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A))); 942d0f46423SBarry Smith for (j = 0; j < A->cmap->N; j++) { 943064f8208SBarry Smith if (tmp2[j] > *nrm) *nrm = tmp2[j]; 9443501a2bdSLois Curfman McInnes } 9459566063dSJacob Faibussowitsch PetscCall(PetscFree2(tmp, tmp2)); 9469566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(A->cmap->n * A->rmap->n)); 9473a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 948329f5518SBarry Smith PetscReal ntemp; 9499566063dSJacob Faibussowitsch PetscCall(MatNorm(mdn->A, type, &ntemp)); 9501c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&ntemp, nrm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A))); 951ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "No support for two norm"); 9523501a2bdSLois Curfman McInnes } 9539566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(mdn->A, &av)); 9543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9553501a2bdSLois Curfman McInnes } 9563501a2bdSLois Curfman McInnes 957*66976f2fSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIDense(Mat A, MatReuse reuse, Mat *matout) 958d71ae5a4SJacob Faibussowitsch { 9593501a2bdSLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense *)A->data; 9603501a2bdSLois Curfman McInnes Mat B; 961d0f46423SBarry Smith PetscInt M = A->rmap->N, N = A->cmap->N, m, n, *rwork, rstart = A->rmap->rstart; 962637a0070SStefano Zampini PetscInt j, i, lda; 96387828ca2SBarry Smith PetscScalar *v; 9643501a2bdSLois Curfman McInnes 9653a40ed3dSBarry Smith PetscFunctionBegin; 9667fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout)); 967cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 9689566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 9699566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M)); 9709566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)A)->type_name)); 9719566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(B, NULL)); 972637a0070SStefano Zampini } else B = *matout; 9733501a2bdSLois Curfman McInnes 9749371c9d4SSatish Balay m = a->A->rmap->n; 9759371c9d4SSatish Balay n = a->A->cmap->n; 9769566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A, (const PetscScalar **)&v)); 9779566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &lda)); 9789566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &rwork)); 9793501a2bdSLois Curfman McInnes for (i = 0; i < m; i++) rwork[i] = rstart + i; 9801acff37aSSatish Balay for (j = 0; j < n; j++) { 9819566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, 1, &j, m, rwork, v, INSERT_VALUES)); 982637a0070SStefano Zampini v += lda; 9833501a2bdSLois Curfman McInnes } 9849566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A, (const PetscScalar **)&v)); 9859566063dSJacob Faibussowitsch PetscCall(PetscFree(rwork)); 9869566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 9879566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 988cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) { 9893501a2bdSLois Curfman McInnes *matout = B; 9903501a2bdSLois Curfman McInnes } else { 9919566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(A, &B)); 9923501a2bdSLois Curfman McInnes } 9933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 994096963f5SLois Curfman McInnes } 995096963f5SLois Curfman McInnes 9966849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat, MatDuplicateOption, Mat *); 99752c5f739Sprj- PETSC_INTERN PetscErrorCode MatScale_MPIDense(Mat, PetscScalar); 9988965ea79SLois Curfman McInnes 999*66976f2fSJacob Faibussowitsch static PetscErrorCode MatSetUp_MPIDense(Mat A) 1000d71ae5a4SJacob Faibussowitsch { 1001273d9f13SBarry Smith PetscFunctionBegin; 10029566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->rmap)); 10039566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->cmap)); 100448a46eb9SPierre Jolivet if (!A->preallocated) PetscCall(MatMPIDenseSetPreallocation(A, NULL)); 10053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1006273d9f13SBarry Smith } 1007273d9f13SBarry Smith 1008*66976f2fSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIDense(Mat Y, PetscScalar alpha, Mat X, MatStructure str) 1009d71ae5a4SJacob Faibussowitsch { 1010488007eeSBarry Smith Mat_MPIDense *A = (Mat_MPIDense *)Y->data, *B = (Mat_MPIDense *)X->data; 1011488007eeSBarry Smith 1012488007eeSBarry Smith PetscFunctionBegin; 10139566063dSJacob Faibussowitsch PetscCall(MatAXPY(A->A, alpha, B->A, str)); 10143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1015488007eeSBarry Smith } 1016488007eeSBarry Smith 1017*66976f2fSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIDense(Mat mat) 1018d71ae5a4SJacob Faibussowitsch { 1019ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense *)mat->data; 1020ba337c44SJed Brown 1021ba337c44SJed Brown PetscFunctionBegin; 10229566063dSJacob Faibussowitsch PetscCall(MatConjugate(a->A)); 10233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1024ba337c44SJed Brown } 1025ba337c44SJed Brown 1026*66976f2fSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIDense(Mat A) 1027d71ae5a4SJacob Faibussowitsch { 1028ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense *)A->data; 1029ba337c44SJed Brown 1030ba337c44SJed Brown PetscFunctionBegin; 10319566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 10323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1033ba337c44SJed Brown } 1034ba337c44SJed Brown 1035*66976f2fSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIDense(Mat A) 1036d71ae5a4SJacob Faibussowitsch { 1037ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense *)A->data; 1038ba337c44SJed Brown 1039ba337c44SJed Brown PetscFunctionBegin; 10409566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 10413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1042ba337c44SJed Brown } 1043ba337c44SJed Brown 1044d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatGetColumnVector_MPIDense(Mat A, Vec v, PetscInt col) 1045d71ae5a4SJacob Faibussowitsch { 1046637a0070SStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 104749a6ff4bSBarry Smith 104849a6ff4bSBarry Smith PetscFunctionBegin; 104928b400f6SJacob Faibussowitsch PetscCheck(a->A, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Missing local matrix"); 105028b400f6SJacob Faibussowitsch PetscCheck(a->A->ops->getcolumnvector, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Missing get column operation"); 10519566063dSJacob Faibussowitsch PetscCall((*a->A->ops->getcolumnvector)(a->A, v, col)); 10523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 105349a6ff4bSBarry Smith } 105449a6ff4bSBarry Smith 1055857cbf51SRichard Tran Mills PETSC_INTERN PetscErrorCode MatGetColumnReductions_SeqDense(Mat, PetscInt, PetscReal *); 105652c5f739Sprj- 1057*66976f2fSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIDense(Mat A, PetscInt type, PetscReal *reductions) 1058d71ae5a4SJacob Faibussowitsch { 1059a873a8cdSSam Reynolds PetscInt i, m, n; 10600716a85fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense *)A->data; 10610716a85fSBarry Smith PetscReal *work; 10620716a85fSBarry Smith 10630716a85fSBarry Smith PetscFunctionBegin; 10649566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &n)); 10659566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &work)); 1066857cbf51SRichard Tran Mills if (type == REDUCTION_MEAN_REALPART) { 10679566063dSJacob Faibussowitsch PetscCall(MatGetColumnReductions_SeqDense(a->A, (PetscInt)REDUCTION_SUM_REALPART, work)); 1068857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_IMAGINARYPART) { 10699566063dSJacob Faibussowitsch PetscCall(MatGetColumnReductions_SeqDense(a->A, (PetscInt)REDUCTION_SUM_IMAGINARYPART, work)); 1070a873a8cdSSam Reynolds } else { 10719566063dSJacob Faibussowitsch PetscCall(MatGetColumnReductions_SeqDense(a->A, type, work)); 1072a873a8cdSSam Reynolds } 1073857cbf51SRichard Tran Mills if (type == NORM_2) { 10740716a85fSBarry Smith for (i = 0; i < n; i++) work[i] *= work[i]; 10750716a85fSBarry Smith } 1076857cbf51SRichard Tran Mills if (type == NORM_INFINITY) { 10771c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_MAX, A->hdr.comm)); 10780716a85fSBarry Smith } else { 10791c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_SUM, A->hdr.comm)); 10800716a85fSBarry Smith } 10819566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 1082857cbf51SRichard Tran Mills if (type == NORM_2) { 1083a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] = PetscSqrtReal(reductions[i]); 1084857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 1085a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] /= m; 10860716a85fSBarry Smith } 10873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 10880716a85fSBarry Smith } 10890716a85fSBarry Smith 1090d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetRandom_MPIDense(Mat x, PetscRandom rctx) 1091d71ae5a4SJacob Faibussowitsch { 109273a71a0fSBarry Smith Mat_MPIDense *d = (Mat_MPIDense *)x->data; 109373a71a0fSBarry Smith 109473a71a0fSBarry Smith PetscFunctionBegin; 10959566063dSJacob Faibussowitsch PetscCall(MatSetRandom(d->A, rctx)); 10963faff063SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 10973faff063SStefano Zampini x->offloadmask = d->A->offloadmask; 10983faff063SStefano Zampini #endif 10993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 110073a71a0fSBarry Smith } 110173a71a0fSBarry Smith 1102d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIDense(Mat A, PetscBool *missing, PetscInt *d) 1103d71ae5a4SJacob Faibussowitsch { 11043b49f96aSBarry Smith PetscFunctionBegin; 11053b49f96aSBarry Smith *missing = PETSC_FALSE; 11063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 11073b49f96aSBarry Smith } 11083b49f96aSBarry Smith 11094222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat, Mat, PetscReal, Mat); 1110cc48ffa7SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat, Mat, Mat); 11116718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat, Mat, PetscReal, Mat); 1112a1f9a5e6SStefano Zampini static PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat, Mat, Mat); 11136718818eSStefano Zampini static PetscErrorCode MatEqual_MPIDense(Mat, Mat, PetscBool *); 11146718818eSStefano Zampini static PetscErrorCode MatLoad_MPIDense(Mat, PetscViewer); 1115cc48ffa7SToby Isaac 111609dc0095SBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIDense, 111709dc0095SBarry Smith MatGetRow_MPIDense, 111809dc0095SBarry Smith MatRestoreRow_MPIDense, 111909dc0095SBarry Smith MatMult_MPIDense, 112097304618SKris Buschelman /* 4*/ MatMultAdd_MPIDense, 11217c922b88SBarry Smith MatMultTranspose_MPIDense, 11227c922b88SBarry Smith MatMultTransposeAdd_MPIDense, 1123f4259b30SLisandro Dalcin NULL, 1124f4259b30SLisandro Dalcin NULL, 1125f4259b30SLisandro Dalcin NULL, 1126f4259b30SLisandro Dalcin /* 10*/ NULL, 1127f4259b30SLisandro Dalcin NULL, 1128f4259b30SLisandro Dalcin NULL, 1129f4259b30SLisandro Dalcin NULL, 113009dc0095SBarry Smith MatTranspose_MPIDense, 113197304618SKris Buschelman /* 15*/ MatGetInfo_MPIDense, 11326e4ee0c6SHong Zhang MatEqual_MPIDense, 113309dc0095SBarry Smith MatGetDiagonal_MPIDense, 11345b2fa520SLois Curfman McInnes MatDiagonalScale_MPIDense, 113509dc0095SBarry Smith MatNorm_MPIDense, 113697304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPIDense, 113709dc0095SBarry Smith MatAssemblyEnd_MPIDense, 113809dc0095SBarry Smith MatSetOption_MPIDense, 113909dc0095SBarry Smith MatZeroEntries_MPIDense, 1140d519adbfSMatthew Knepley /* 24*/ MatZeroRows_MPIDense, 1141f4259b30SLisandro Dalcin NULL, 1142f4259b30SLisandro Dalcin NULL, 1143f4259b30SLisandro Dalcin NULL, 1144f4259b30SLisandro Dalcin NULL, 11454994cf47SJed Brown /* 29*/ MatSetUp_MPIDense, 1146f4259b30SLisandro Dalcin NULL, 1147f4259b30SLisandro Dalcin NULL, 1148c56a70eeSBarry Smith MatGetDiagonalBlock_MPIDense, 1149f4259b30SLisandro Dalcin NULL, 1150d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPIDense, 1151f4259b30SLisandro Dalcin NULL, 1152f4259b30SLisandro Dalcin NULL, 1153f4259b30SLisandro Dalcin NULL, 1154f4259b30SLisandro Dalcin NULL, 1155d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPIDense, 11567dae84e0SHong Zhang MatCreateSubMatrices_MPIDense, 1157f4259b30SLisandro Dalcin NULL, 115809dc0095SBarry Smith MatGetValues_MPIDense, 1159a76f77c3SStefano Zampini MatCopy_MPIDense, 1160f4259b30SLisandro Dalcin /* 44*/ NULL, 116109dc0095SBarry Smith MatScale_MPIDense, 11622f605a99SJose E. Roman MatShift_MPIDense, 1163f4259b30SLisandro Dalcin NULL, 1164f4259b30SLisandro Dalcin NULL, 116573a71a0fSBarry Smith /* 49*/ MatSetRandom_MPIDense, 1166f4259b30SLisandro Dalcin NULL, 1167f4259b30SLisandro Dalcin NULL, 1168f4259b30SLisandro Dalcin NULL, 1169f4259b30SLisandro Dalcin NULL, 1170f4259b30SLisandro Dalcin /* 54*/ NULL, 1171f4259b30SLisandro Dalcin NULL, 1172f4259b30SLisandro Dalcin NULL, 1173f4259b30SLisandro Dalcin NULL, 1174f4259b30SLisandro Dalcin NULL, 11757dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPIDense, 1176b9b97703SBarry Smith MatDestroy_MPIDense, 1177b9b97703SBarry Smith MatView_MPIDense, 1178f4259b30SLisandro Dalcin NULL, 1179f4259b30SLisandro Dalcin NULL, 1180f4259b30SLisandro Dalcin /* 64*/ NULL, 1181f4259b30SLisandro Dalcin NULL, 1182f4259b30SLisandro Dalcin NULL, 1183f4259b30SLisandro Dalcin NULL, 1184f4259b30SLisandro Dalcin NULL, 1185f4259b30SLisandro Dalcin /* 69*/ NULL, 1186f4259b30SLisandro Dalcin NULL, 1187f4259b30SLisandro Dalcin NULL, 1188f4259b30SLisandro Dalcin NULL, 1189f4259b30SLisandro Dalcin NULL, 1190f4259b30SLisandro Dalcin /* 74*/ NULL, 1191f4259b30SLisandro Dalcin NULL, 1192f4259b30SLisandro Dalcin NULL, 1193f4259b30SLisandro Dalcin NULL, 1194f4259b30SLisandro Dalcin NULL, 1195f4259b30SLisandro Dalcin /* 79*/ NULL, 1196f4259b30SLisandro Dalcin NULL, 1197f4259b30SLisandro Dalcin NULL, 1198f4259b30SLisandro Dalcin NULL, 11995bba2384SShri Abhyankar /* 83*/ MatLoad_MPIDense, 1200f4259b30SLisandro Dalcin NULL, 1201f4259b30SLisandro Dalcin NULL, 1202f4259b30SLisandro Dalcin NULL, 1203f4259b30SLisandro Dalcin NULL, 1204f4259b30SLisandro Dalcin NULL, 1205f4259b30SLisandro Dalcin /* 89*/ NULL, 1206f4259b30SLisandro Dalcin NULL, 1207f4259b30SLisandro Dalcin NULL, 1208f4259b30SLisandro Dalcin NULL, 1209f4259b30SLisandro Dalcin NULL, 1210f4259b30SLisandro Dalcin /* 94*/ NULL, 1211f4259b30SLisandro Dalcin NULL, 12126718818eSStefano Zampini MatMatTransposeMultSymbolic_MPIDense_MPIDense, 1213cc48ffa7SToby Isaac MatMatTransposeMultNumeric_MPIDense_MPIDense, 1214f4259b30SLisandro Dalcin NULL, 12154222ddf1SHong Zhang /* 99*/ MatProductSetFromOptions_MPIDense, 1216f4259b30SLisandro Dalcin NULL, 1217f4259b30SLisandro Dalcin NULL, 1218ba337c44SJed Brown MatConjugate_MPIDense, 1219f4259b30SLisandro Dalcin NULL, 1220f4259b30SLisandro Dalcin /*104*/ NULL, 1221ba337c44SJed Brown MatRealPart_MPIDense, 1222ba337c44SJed Brown MatImaginaryPart_MPIDense, 1223f4259b30SLisandro Dalcin NULL, 1224f4259b30SLisandro Dalcin NULL, 1225f4259b30SLisandro Dalcin /*109*/ NULL, 1226f4259b30SLisandro Dalcin NULL, 1227f4259b30SLisandro Dalcin NULL, 122849a6ff4bSBarry Smith MatGetColumnVector_MPIDense, 12293b49f96aSBarry Smith MatMissingDiagonal_MPIDense, 1230f4259b30SLisandro Dalcin /*114*/ NULL, 1231f4259b30SLisandro Dalcin NULL, 1232f4259b30SLisandro Dalcin NULL, 1233f4259b30SLisandro Dalcin NULL, 1234f4259b30SLisandro Dalcin NULL, 1235f4259b30SLisandro Dalcin /*119*/ NULL, 1236f4259b30SLisandro Dalcin NULL, 1237f4259b30SLisandro Dalcin NULL, 1238f4259b30SLisandro Dalcin NULL, 1239f4259b30SLisandro Dalcin NULL, 1240f4259b30SLisandro Dalcin /*124*/ NULL, 1241a873a8cdSSam Reynolds MatGetColumnReductions_MPIDense, 1242f4259b30SLisandro Dalcin NULL, 1243f4259b30SLisandro Dalcin NULL, 1244f4259b30SLisandro Dalcin NULL, 1245f4259b30SLisandro Dalcin /*129*/ NULL, 1246f4259b30SLisandro Dalcin NULL, 12476718818eSStefano Zampini MatTransposeMatMultSymbolic_MPIDense_MPIDense, 1248cb20be35SHong Zhang MatTransposeMatMultNumeric_MPIDense_MPIDense, 1249f4259b30SLisandro Dalcin NULL, 1250f4259b30SLisandro Dalcin /*134*/ NULL, 1251f4259b30SLisandro Dalcin NULL, 1252f4259b30SLisandro Dalcin NULL, 1253f4259b30SLisandro Dalcin NULL, 1254f4259b30SLisandro Dalcin NULL, 1255f4259b30SLisandro Dalcin /*139*/ NULL, 1256f4259b30SLisandro Dalcin NULL, 1257f4259b30SLisandro Dalcin NULL, 1258f4259b30SLisandro Dalcin NULL, 1259f4259b30SLisandro Dalcin NULL, 12604222ddf1SHong Zhang MatCreateMPIMatConcatenateSeqMat_MPIDense, 1261f4259b30SLisandro Dalcin /*145*/ NULL, 1262f4259b30SLisandro Dalcin NULL, 126399a7f59eSMark Adams NULL, 126499a7f59eSMark Adams NULL, 12657fb60732SBarry Smith NULL, 1266dec0b466SHong Zhang /*150*/ NULL, 1267dec0b466SHong Zhang NULL}; 12688965ea79SLois Curfman McInnes 1269*66976f2fSJacob Faibussowitsch static PetscErrorCode MatMPIDenseSetPreallocation_MPIDense(Mat mat, PetscScalar *data) 1270d71ae5a4SJacob Faibussowitsch { 1271637a0070SStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)mat->data; 127247d993e7Ssuyashtn MatType mtype = MATSEQDENSE; 1273a23d5eceSKris Buschelman 1274a23d5eceSKris Buschelman PetscFunctionBegin; 127528b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)mat), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 12769566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 12779566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 1278637a0070SStefano Zampini if (!a->A) { 12799566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &a->A)); 12809566063dSJacob Faibussowitsch PetscCall(MatSetSizes(a->A, mat->rmap->n, mat->cmap->N, mat->rmap->n, mat->cmap->N)); 1281637a0070SStefano Zampini } 128247d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) 128347d993e7Ssuyashtn PetscBool iscuda; 12849566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)mat, MATMPIDENSECUDA, &iscuda)); 128547d993e7Ssuyashtn if (iscuda) mtype = MATSEQDENSECUDA; 128647d993e7Ssuyashtn #endif 128747d993e7Ssuyashtn #if defined(PETSC_HAVE_HIP) 128847d993e7Ssuyashtn PetscBool iship; 128947d993e7Ssuyashtn PetscCall(PetscObjectTypeCompare((PetscObject)mat, MATMPIDENSEHIP, &iship)); 129047d993e7Ssuyashtn if (iship) mtype = MATSEQDENSEHIP; 129147d993e7Ssuyashtn #endif 129247d993e7Ssuyashtn PetscCall(MatSetType(a->A, mtype)); 12939566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(a->A, data)); 129447d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) 12953faff063SStefano Zampini mat->offloadmask = a->A->offloadmask; 12963faff063SStefano Zampini #endif 1297637a0070SStefano Zampini mat->preallocated = PETSC_TRUE; 12986f08ad05SPierre Jolivet mat->assembled = PETSC_TRUE; 12993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1300a23d5eceSKris Buschelman } 1301a23d5eceSKris Buschelman 1302d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIDense(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 1303d71ae5a4SJacob Faibussowitsch { 13044e29119aSPierre Jolivet Mat B, C; 13054e29119aSPierre Jolivet 13064e29119aSPierre Jolivet PetscFunctionBegin; 13079566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &C)); 13089566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqAIJ_SeqDense(C, MATSEQDENSE, MAT_INITIAL_MATRIX, &B)); 13099566063dSJacob Faibussowitsch PetscCall(MatDestroy(&C)); 13104e29119aSPierre Jolivet if (reuse == MAT_REUSE_MATRIX) { 13114e29119aSPierre Jolivet C = *newmat; 13124e29119aSPierre Jolivet } else C = NULL; 13139566063dSJacob Faibussowitsch PetscCall(MatCreateMPIMatConcatenateSeqMat(PetscObjectComm((PetscObject)A), B, A->cmap->n, !C ? MAT_INITIAL_MATRIX : MAT_REUSE_MATRIX, &C)); 13149566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 13154e29119aSPierre Jolivet if (reuse == MAT_INPLACE_MATRIX) { 13169566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &C)); 13174e29119aSPierre Jolivet } else if (reuse == MAT_INITIAL_MATRIX) *newmat = C; 13183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13194e29119aSPierre Jolivet } 13204e29119aSPierre Jolivet 1321*66976f2fSJacob Faibussowitsch static PetscErrorCode MatConvert_MPIDense_MPIAIJ(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 1322d71ae5a4SJacob Faibussowitsch { 13234e29119aSPierre Jolivet Mat B, C; 13244e29119aSPierre Jolivet 13254e29119aSPierre Jolivet PetscFunctionBegin; 13269566063dSJacob Faibussowitsch PetscCall(MatDenseGetLocalMatrix(A, &C)); 13279566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqDense_SeqAIJ(C, MATSEQAIJ, MAT_INITIAL_MATRIX, &B)); 13284e29119aSPierre Jolivet if (reuse == MAT_REUSE_MATRIX) { 13294e29119aSPierre Jolivet C = *newmat; 13304e29119aSPierre Jolivet } else C = NULL; 13319566063dSJacob Faibussowitsch PetscCall(MatCreateMPIMatConcatenateSeqMat(PetscObjectComm((PetscObject)A), B, A->cmap->n, !C ? MAT_INITIAL_MATRIX : MAT_REUSE_MATRIX, &C)); 13329566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 13334e29119aSPierre Jolivet if (reuse == MAT_INPLACE_MATRIX) { 13349566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &C)); 13354e29119aSPierre Jolivet } else if (reuse == MAT_INITIAL_MATRIX) *newmat = C; 13363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13374e29119aSPierre Jolivet } 13384e29119aSPierre Jolivet 133965b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 1340d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIDense_Elemental(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 1341d71ae5a4SJacob Faibussowitsch { 13428ea901baSHong Zhang Mat mat_elemental; 134332d7a744SHong Zhang PetscScalar *v; 134432d7a744SHong Zhang PetscInt m = A->rmap->n, N = A->cmap->N, rstart = A->rmap->rstart, i, *rows, *cols; 13458ea901baSHong Zhang 13468baccfbdSHong Zhang PetscFunctionBegin; 1347378336b6SHong Zhang if (reuse == MAT_REUSE_MATRIX) { 1348378336b6SHong Zhang mat_elemental = *newmat; 13499566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(*newmat)); 1350378336b6SHong Zhang } else { 13519566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental)); 13529566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat_elemental, PETSC_DECIDE, PETSC_DECIDE, A->rmap->N, A->cmap->N)); 13539566063dSJacob Faibussowitsch PetscCall(MatSetType(mat_elemental, MATELEMENTAL)); 13549566063dSJacob Faibussowitsch PetscCall(MatSetUp(mat_elemental)); 13559566063dSJacob Faibussowitsch PetscCall(MatSetOption(mat_elemental, MAT_ROW_ORIENTED, PETSC_FALSE)); 1356378336b6SHong Zhang } 1357378336b6SHong Zhang 13589566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &rows, N, &cols)); 135932d7a744SHong Zhang for (i = 0; i < N; i++) cols[i] = i; 136032d7a744SHong Zhang for (i = 0; i < m; i++) rows[i] = rstart + i; 13618ea901baSHong Zhang 1362637a0070SStefano Zampini /* PETSc-Elemental interface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */ 13639566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(A, &v)); 13649566063dSJacob Faibussowitsch PetscCall(MatSetValues(mat_elemental, m, rows, N, cols, v, ADD_VALUES)); 13659566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY)); 13669566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY)); 13679566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(A, &v)); 13689566063dSJacob Faibussowitsch PetscCall(PetscFree2(rows, cols)); 13698ea901baSHong Zhang 1370511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 13719566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &mat_elemental)); 13728ea901baSHong Zhang } else { 13738ea901baSHong Zhang *newmat = mat_elemental; 13748ea901baSHong Zhang } 13753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13768baccfbdSHong Zhang } 137765b80a83SHong Zhang #endif 13788baccfbdSHong Zhang 1379d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseGetColumn_MPIDense(Mat A, PetscInt col, PetscScalar **vals) 1380d71ae5a4SJacob Faibussowitsch { 138186aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense *)A->data; 138286aefd0dSHong Zhang 138386aefd0dSHong Zhang PetscFunctionBegin; 13849566063dSJacob Faibussowitsch PetscCall(MatDenseGetColumn(mat->A, col, vals)); 13853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 138686aefd0dSHong Zhang } 138786aefd0dSHong Zhang 1388d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseRestoreColumn_MPIDense(Mat A, PetscScalar **vals) 1389d71ae5a4SJacob Faibussowitsch { 139086aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense *)A->data; 139186aefd0dSHong Zhang 139286aefd0dSHong Zhang PetscFunctionBegin; 13939566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreColumn(mat->A, vals)); 13943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 139586aefd0dSHong Zhang } 139686aefd0dSHong Zhang 1397d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIDense(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) 1398d71ae5a4SJacob Faibussowitsch { 139994e2cb23SJakub Kruzik Mat_MPIDense *mat; 140094e2cb23SJakub Kruzik PetscInt m, nloc, N; 140194e2cb23SJakub Kruzik 140294e2cb23SJakub Kruzik PetscFunctionBegin; 14039566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat, &m, &N)); 14049566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(inmat, NULL, &nloc)); 140594e2cb23SJakub Kruzik if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 140694e2cb23SJakub Kruzik PetscInt sum; 140794e2cb23SJakub Kruzik 140848a46eb9SPierre Jolivet if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnership(comm, &n, &N)); 140994e2cb23SJakub Kruzik /* Check sum(n) = N */ 14101c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&n, &sum, 1, MPIU_INT, MPI_SUM, comm)); 141108401ef6SPierre Jolivet PetscCheck(sum == N, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local columns %" PetscInt_FMT " != global columns %" PetscInt_FMT, sum, N); 141294e2cb23SJakub Kruzik 14139566063dSJacob Faibussowitsch PetscCall(MatCreateDense(comm, m, n, PETSC_DETERMINE, N, NULL, outmat)); 14149566063dSJacob Faibussowitsch PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 141594e2cb23SJakub Kruzik } 141694e2cb23SJakub Kruzik 141794e2cb23SJakub Kruzik /* numeric phase */ 141894e2cb23SJakub Kruzik mat = (Mat_MPIDense *)(*outmat)->data; 14199566063dSJacob Faibussowitsch PetscCall(MatCopy(inmat, mat->A, SAME_NONZERO_PATTERN)); 14203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 142194e2cb23SJakub Kruzik } 142294e2cb23SJakub Kruzik 1423d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetColumnVec_MPIDense(Mat A, PetscInt col, Vec *v) 1424d71ae5a4SJacob Faibussowitsch { 14256947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 14266947451fSStefano Zampini PetscInt lda; 14276947451fSStefano Zampini 14286947451fSStefano Zampini PetscFunctionBegin; 142928b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 143028b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 1431d16ceb75SStefano Zampini if (!a->cvec) PetscCall(MatDenseCreateColumnVec_Private(A, &a->cvec)); 14326947451fSStefano Zampini a->vecinuse = col + 1; 14339566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &lda)); 14349566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(a->A, (PetscScalar **)&a->ptrinuse)); 14359566063dSJacob Faibussowitsch PetscCall(VecPlaceArray(a->cvec, a->ptrinuse + (size_t)col * (size_t)lda)); 14366947451fSStefano Zampini *v = a->cvec; 14373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14386947451fSStefano Zampini } 14396947451fSStefano Zampini 1440d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreColumnVec_MPIDense(Mat A, PetscInt col, Vec *v) 1441d71ae5a4SJacob Faibussowitsch { 14426947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 14436947451fSStefano Zampini 14446947451fSStefano Zampini PetscFunctionBegin; 144528b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseGetColumnVec() first"); 144628b400f6SJacob Faibussowitsch PetscCheck(a->cvec, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Missing internal column vector"); 14476947451fSStefano Zampini a->vecinuse = 0; 14489566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(a->A, (PetscScalar **)&a->ptrinuse)); 14499566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 1450742765d3SMatthew Knepley if (v) *v = NULL; 14513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14526947451fSStefano Zampini } 14536947451fSStefano Zampini 1454d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetColumnVecRead_MPIDense(Mat A, PetscInt col, Vec *v) 1455d71ae5a4SJacob Faibussowitsch { 14566947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 14576947451fSStefano Zampini PetscInt lda; 14586947451fSStefano Zampini 14596947451fSStefano Zampini PetscFunctionBegin; 146028b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 146128b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 1462d16ceb75SStefano Zampini if (!a->cvec) PetscCall(MatDenseCreateColumnVec_Private(A, &a->cvec)); 14636947451fSStefano Zampini a->vecinuse = col + 1; 14649566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &lda)); 14659566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A, &a->ptrinuse)); 14669566063dSJacob Faibussowitsch PetscCall(VecPlaceArray(a->cvec, a->ptrinuse + (size_t)col * (size_t)lda)); 14679566063dSJacob Faibussowitsch PetscCall(VecLockReadPush(a->cvec)); 14686947451fSStefano Zampini *v = a->cvec; 14693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14706947451fSStefano Zampini } 14716947451fSStefano Zampini 1472d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreColumnVecRead_MPIDense(Mat A, PetscInt col, Vec *v) 1473d71ae5a4SJacob Faibussowitsch { 14746947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 14756947451fSStefano Zampini 14766947451fSStefano Zampini PetscFunctionBegin; 14775f80ce2aSJacob Faibussowitsch PetscCheck(a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseGetColumnVec() first"); 14785f80ce2aSJacob Faibussowitsch PetscCheck(a->cvec, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing internal column vector"); 14796947451fSStefano Zampini a->vecinuse = 0; 14809566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A, &a->ptrinuse)); 14819566063dSJacob Faibussowitsch PetscCall(VecLockReadPop(a->cvec)); 14829566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 1483742765d3SMatthew Knepley if (v) *v = NULL; 14843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14856947451fSStefano Zampini } 14866947451fSStefano Zampini 1487d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetColumnVecWrite_MPIDense(Mat A, PetscInt col, Vec *v) 1488d71ae5a4SJacob Faibussowitsch { 14896947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 14906947451fSStefano Zampini PetscInt lda; 14916947451fSStefano Zampini 14926947451fSStefano Zampini PetscFunctionBegin; 14935f80ce2aSJacob Faibussowitsch PetscCheck(!a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 14945f80ce2aSJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 1495d16ceb75SStefano Zampini if (!a->cvec) PetscCall(MatDenseCreateColumnVec_Private(A, &a->cvec)); 14966947451fSStefano Zampini a->vecinuse = col + 1; 14979566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &lda)); 14989566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(a->A, (PetscScalar **)&a->ptrinuse)); 14999566063dSJacob Faibussowitsch PetscCall(VecPlaceArray(a->cvec, a->ptrinuse + (size_t)col * (size_t)lda)); 15006947451fSStefano Zampini *v = a->cvec; 15013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15026947451fSStefano Zampini } 15036947451fSStefano Zampini 1504d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDense(Mat A, PetscInt col, Vec *v) 1505d71ae5a4SJacob Faibussowitsch { 15066947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 15076947451fSStefano Zampini 15086947451fSStefano Zampini PetscFunctionBegin; 15095f80ce2aSJacob Faibussowitsch PetscCheck(a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseGetColumnVec() first"); 15105f80ce2aSJacob Faibussowitsch PetscCheck(a->cvec, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing internal column vector"); 15116947451fSStefano Zampini a->vecinuse = 0; 15129566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(a->A, (PetscScalar **)&a->ptrinuse)); 15139566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 1514742765d3SMatthew Knepley if (v) *v = NULL; 15153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15166947451fSStefano Zampini } 15176947451fSStefano Zampini 1518*66976f2fSJacob Faibussowitsch static PetscErrorCode MatDenseGetSubMatrix_MPIDense(Mat A, PetscInt rbegin, PetscInt rend, PetscInt cbegin, PetscInt cend, Mat *v) 1519d71ae5a4SJacob Faibussowitsch { 15205ea7661aSPierre Jolivet Mat_MPIDense *a = (Mat_MPIDense *)A->data; 1521616b8fbbSStefano Zampini Mat_MPIDense *c; 1522616b8fbbSStefano Zampini MPI_Comm comm; 1523a2748737SPierre Jolivet PetscInt pbegin, pend; 15245ea7661aSPierre Jolivet 15255ea7661aSPierre Jolivet PetscFunctionBegin; 15269566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 15275f80ce2aSJacob Faibussowitsch PetscCheck(!a->vecinuse, comm, PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 15285f80ce2aSJacob Faibussowitsch PetscCheck(!a->matinuse, comm, PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 1529a2748737SPierre Jolivet pbegin = PetscMax(0, PetscMin(A->rmap->rend, rbegin) - A->rmap->rstart); 1530a2748737SPierre Jolivet pend = PetscMin(A->rmap->n, PetscMax(0, rend - A->rmap->rstart)); 15315ea7661aSPierre Jolivet if (!a->cmat) { 15329566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &a->cmat)); 15339566063dSJacob Faibussowitsch PetscCall(MatSetType(a->cmat, ((PetscObject)A)->type_name)); 1534a2748737SPierre Jolivet if (rend - rbegin == A->rmap->N) PetscCall(PetscLayoutReference(A->rmap, &a->cmat->rmap)); 1535a2748737SPierre Jolivet else { 1536a2748737SPierre Jolivet PetscCall(PetscLayoutSetLocalSize(a->cmat->rmap, pend - pbegin)); 1537a2748737SPierre Jolivet PetscCall(PetscLayoutSetSize(a->cmat->rmap, rend - rbegin)); 1538a2748737SPierre Jolivet PetscCall(PetscLayoutSetUp(a->cmat->rmap)); 1539a2748737SPierre Jolivet } 15409566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(a->cmat->cmap, cend - cbegin)); 15419566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(a->cmat->cmap)); 1542a2748737SPierre Jolivet } else { 1543a2748737SPierre Jolivet PetscBool same = (PetscBool)(rend - rbegin == a->cmat->rmap->N); 1544a2748737SPierre Jolivet if (same && a->cmat->rmap->N != A->rmap->N) { 1545a2748737SPierre Jolivet same = (PetscBool)(pend - pbegin == a->cmat->rmap->n); 1546a2748737SPierre Jolivet PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &same, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 1547a2748737SPierre Jolivet } 1548a2748737SPierre Jolivet if (!same) { 1549a2748737SPierre Jolivet PetscCall(PetscLayoutDestroy(&a->cmat->rmap)); 1550a2748737SPierre Jolivet PetscCall(PetscLayoutCreate(comm, &a->cmat->rmap)); 1551a2748737SPierre Jolivet PetscCall(PetscLayoutSetLocalSize(a->cmat->rmap, pend - pbegin)); 1552a2748737SPierre Jolivet PetscCall(PetscLayoutSetSize(a->cmat->rmap, rend - rbegin)); 1553a2748737SPierre Jolivet PetscCall(PetscLayoutSetUp(a->cmat->rmap)); 1554a2748737SPierre Jolivet } 1555a2748737SPierre Jolivet if (cend - cbegin != a->cmat->cmap->N) { 15569566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&a->cmat->cmap)); 15579566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &a->cmat->cmap)); 15589566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(a->cmat->cmap, cend - cbegin)); 15599566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(a->cmat->cmap)); 15605ea7661aSPierre Jolivet } 1561a2748737SPierre Jolivet } 1562616b8fbbSStefano Zampini c = (Mat_MPIDense *)a->cmat->data; 15635f80ce2aSJacob Faibussowitsch PetscCheck(!c->A, comm, PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 1564a2748737SPierre Jolivet PetscCall(MatDenseGetSubMatrix(a->A, pbegin, pend, cbegin, cend, &c->A)); 15653faff063SStefano Zampini 1566616b8fbbSStefano Zampini a->cmat->preallocated = PETSC_TRUE; 1567616b8fbbSStefano Zampini a->cmat->assembled = PETSC_TRUE; 15683faff063SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 15693faff063SStefano Zampini a->cmat->offloadmask = c->A->offloadmask; 15703faff063SStefano Zampini #endif 15715ea7661aSPierre Jolivet a->matinuse = cbegin + 1; 15725ea7661aSPierre Jolivet *v = a->cmat; 15733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15745ea7661aSPierre Jolivet } 15755ea7661aSPierre Jolivet 1576*66976f2fSJacob Faibussowitsch static PetscErrorCode MatDenseRestoreSubMatrix_MPIDense(Mat A, Mat *v) 1577d71ae5a4SJacob Faibussowitsch { 15785ea7661aSPierre Jolivet Mat_MPIDense *a = (Mat_MPIDense *)A->data; 1579616b8fbbSStefano Zampini Mat_MPIDense *c; 15805ea7661aSPierre Jolivet 15815ea7661aSPierre Jolivet PetscFunctionBegin; 15825f80ce2aSJacob Faibussowitsch PetscCheck(a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseGetSubMatrix() first"); 15835f80ce2aSJacob Faibussowitsch PetscCheck(a->cmat, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing internal matrix"); 15845f80ce2aSJacob Faibussowitsch PetscCheck(*v == a->cmat, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Not the matrix obtained from MatDenseGetSubMatrix()"); 15855ea7661aSPierre Jolivet a->matinuse = 0; 1586616b8fbbSStefano Zampini c = (Mat_MPIDense *)a->cmat->data; 15879566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreSubMatrix(a->A, &c->A)); 1588742765d3SMatthew Knepley if (v) *v = NULL; 15893faff063SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 15903faff063SStefano Zampini A->offloadmask = a->A->offloadmask; 15913faff063SStefano Zampini #endif 15923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15935ea7661aSPierre Jolivet } 15945ea7661aSPierre Jolivet 1595002bc6daSRichard Tran Mills /*MC 1596002bc6daSRichard Tran Mills MATMPIDENSE - MATMPIDENSE = "mpidense" - A matrix type to be used for distributed dense matrices. 1597002bc6daSRichard Tran Mills 15982ef1f0ffSBarry Smith Options Database Key: 159911a5261eSBarry Smith . -mat_type mpidense - sets the matrix type to `MATMPIDENSE` during a call to `MatSetFromOptions()` 1600002bc6daSRichard Tran Mills 1601002bc6daSRichard Tran Mills Level: beginner 1602002bc6daSRichard Tran Mills 16031cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateDense()`, `MATSEQDENSE`, `MATDENSE` 1604002bc6daSRichard Tran Mills M*/ 16054742e46bSJacob Faibussowitsch PetscErrorCode MatCreate_MPIDense(Mat mat) 1606d71ae5a4SJacob Faibussowitsch { 1607273d9f13SBarry Smith Mat_MPIDense *a; 1608273d9f13SBarry Smith 1609273d9f13SBarry Smith PetscFunctionBegin; 16104dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&a)); 1611b0a32e0cSBarry Smith mat->data = (void *)a; 1612aea10558SJacob Faibussowitsch mat->ops[0] = MatOps_Values; 1613273d9f13SBarry Smith 1614273d9f13SBarry Smith mat->insertmode = NOT_SET_VALUES; 1615273d9f13SBarry Smith 1616273d9f13SBarry Smith /* build cache for off array entries formed */ 1617273d9f13SBarry Smith a->donotstash = PETSC_FALSE; 16182205254eSKarl Rupp 16199566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)mat), 1, &mat->stash)); 1620273d9f13SBarry Smith 1621273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 1622f4259b30SLisandro Dalcin a->lvec = NULL; 1623f4259b30SLisandro Dalcin a->Mvctx = NULL; 1624273d9f13SBarry Smith a->roworiented = PETSC_TRUE; 1625273d9f13SBarry Smith 16269566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetLDA_C", MatDenseGetLDA_MPIDense)); 16279566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseSetLDA_C", MatDenseSetLDA_MPIDense)); 16289566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetArray_C", MatDenseGetArray_MPIDense)); 16299566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreArray_C", MatDenseRestoreArray_MPIDense)); 16309566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetArrayRead_C", MatDenseGetArrayRead_MPIDense)); 16319566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreArrayRead_C", MatDenseRestoreArrayRead_MPIDense)); 16329566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetArrayWrite_C", MatDenseGetArrayWrite_MPIDense)); 16339566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreArrayWrite_C", MatDenseRestoreArrayWrite_MPIDense)); 16349566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDensePlaceArray_C", MatDensePlaceArray_MPIDense)); 16359566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseResetArray_C", MatDenseResetArray_MPIDense)); 16369566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseReplaceArray_C", MatDenseReplaceArray_MPIDense)); 16379566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVec_C", MatDenseGetColumnVec_MPIDense)); 16389566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVec_C", MatDenseRestoreColumnVec_MPIDense)); 16399566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVecRead_C", MatDenseGetColumnVecRead_MPIDense)); 16409566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVecRead_C", MatDenseRestoreColumnVecRead_MPIDense)); 16419566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVecWrite_C", MatDenseGetColumnVecWrite_MPIDense)); 16429566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVecWrite_C", MatDenseRestoreColumnVecWrite_MPIDense)); 16439566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetSubMatrix_C", MatDenseGetSubMatrix_MPIDense)); 16449566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreSubMatrix_C", MatDenseRestoreSubMatrix_MPIDense)); 16459566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpidense_C", MatConvert_MPIAIJ_MPIDense)); 16469566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_mpiaij_C", MatConvert_MPIDense_MPIAIJ)); 16478baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 16489566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_elemental_C", MatConvert_MPIDense_Elemental)); 16498baccfbdSHong Zhang #endif 1650d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 16519566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_scalapack_C", MatConvert_Dense_ScaLAPACK)); 1652d24d4204SJose E. Roman #endif 1653637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 16549566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_mpidensecuda_C", MatConvert_MPIDense_MPIDenseCUDA)); 1655637a0070SStefano Zampini #endif 16569566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIDenseSetPreallocation_C", MatMPIDenseSetPreallocation_MPIDense)); 16579566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpidense_C", MatProductSetFromOptions_MPIAIJ_MPIDense)); 16589566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidense_mpiaij_C", MatProductSetFromOptions_MPIDense_MPIAIJ)); 16596718818eSStefano Zampini #if defined(PETSC_HAVE_CUDA) 16609566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaijcusparse_mpidense_C", MatProductSetFromOptions_MPIAIJ_MPIDense)); 16619566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidense_mpiaijcusparse_C", MatProductSetFromOptions_MPIDense_MPIAIJ)); 16626718818eSStefano Zampini #endif 166347d993e7Ssuyashtn #if defined(PETSC_HAVE_HIP) 166447d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_mpidensehip_C", MatConvert_MPIDense_MPIDenseHIP)); 166547d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaijhipsparse_mpidense_C", MatProductSetFromOptions_MPIAIJ_MPIDense)); 166647d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidense_mpiaijhipsparse_C", MatProductSetFromOptions_MPIDense_MPIAIJ)); 166747d993e7Ssuyashtn #endif 16689566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumn_C", MatDenseGetColumn_MPIDense)); 16699566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumn_C", MatDenseRestoreColumn_MPIDense)); 16709566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)mat, MATMPIDENSE)); 16713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1672273d9f13SBarry Smith } 1673273d9f13SBarry Smith 1674209238afSKris Buschelman /*MC 1675002d173eSKris Buschelman MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices. 1676209238afSKris Buschelman 167711a5261eSBarry Smith This matrix type is identical to `MATSEQDENSE` when constructed with a single process communicator, 167811a5261eSBarry Smith and `MATMPIDENSE` otherwise. 1679209238afSKris Buschelman 16802ef1f0ffSBarry Smith Options Database Key: 168111a5261eSBarry Smith . -mat_type dense - sets the matrix type to `MATDENSE` during a call to `MatSetFromOptions()` 1682209238afSKris Buschelman 1683209238afSKris Buschelman Level: beginner 1684209238afSKris Buschelman 16851cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQDENSE`, `MATMPIDENSE`, `MATDENSECUDA`, `MATDENSEHIP` 16866947451fSStefano Zampini M*/ 16876947451fSStefano Zampini 1688273d9f13SBarry Smith /*@C 1689273d9f13SBarry Smith MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries 1690273d9f13SBarry Smith 16918f490ea3SStefano Zampini Collective 1692273d9f13SBarry Smith 1693273d9f13SBarry Smith Input Parameters: 1694fe59aa6dSJacob Faibussowitsch + B - the matrix 16952ef1f0ffSBarry Smith - data - optional location of matrix data. Set to `NULL` for PETSc 1696273d9f13SBarry Smith to control all matrix memory allocation. 1697273d9f13SBarry Smith 16982ef1f0ffSBarry Smith Level: intermediate 16992ef1f0ffSBarry Smith 1700273d9f13SBarry Smith Notes: 17012ef1f0ffSBarry Smith The dense format is fully compatible with standard Fortran 1702273d9f13SBarry Smith storage by columns. 1703273d9f13SBarry Smith 1704273d9f13SBarry Smith The data input variable is intended primarily for Fortran programmers 1705273d9f13SBarry Smith who wish to allocate their own matrix memory space. Most users should 17062ef1f0ffSBarry Smith set `data` to `NULL`. 1707273d9f13SBarry Smith 17081cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIDENSE`, `MatCreate()`, `MatCreateSeqDense()`, `MatSetValues()` 1709273d9f13SBarry Smith @*/ 1710d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIDenseSetPreallocation(Mat B, PetscScalar *data) 1711d71ae5a4SJacob Faibussowitsch { 1712273d9f13SBarry Smith PetscFunctionBegin; 1713d5ea218eSStefano Zampini PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 1714cac4c232SBarry Smith PetscTryMethod(B, "MatMPIDenseSetPreallocation_C", (Mat, PetscScalar *), (B, data)); 17153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1716273d9f13SBarry Smith } 1717273d9f13SBarry Smith 1718d3042a70SBarry Smith /*@ 171911a5261eSBarry Smith MatDensePlaceArray - Allows one to replace the array in a `MATDENSE` matrix with an 1720d3042a70SBarry Smith array provided by the user. This is useful to avoid copying an array 1721d3042a70SBarry Smith into a matrix 1722d3042a70SBarry Smith 1723d3042a70SBarry Smith Not Collective 1724d3042a70SBarry Smith 1725d3042a70SBarry Smith Input Parameters: 1726d3042a70SBarry Smith + mat - the matrix 1727d3042a70SBarry Smith - array - the array in column major order 1728d3042a70SBarry Smith 17292ef1f0ffSBarry Smith Level: developer 17302ef1f0ffSBarry Smith 173111a5261eSBarry Smith Note: 173211a5261eSBarry Smith You can return to the original array with a call to `MatDenseResetArray()`. The user is responsible for freeing this array; it will not be 1733d3042a70SBarry Smith freed when the matrix is destroyed. 1734d3042a70SBarry Smith 17351cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MatDenseGetArray()`, `MatDenseResetArray()`, `VecPlaceArray()`, `VecGetArray()`, `VecRestoreArray()`, `VecReplaceArray()`, `VecResetArray()`, 173611a5261eSBarry Smith `MatDenseReplaceArray()` 1737d3042a70SBarry Smith @*/ 1738d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDensePlaceArray(Mat mat, const PetscScalar *array) 1739d71ae5a4SJacob Faibussowitsch { 1740d3042a70SBarry Smith PetscFunctionBegin; 1741d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 1742cac4c232SBarry Smith PetscUseMethod(mat, "MatDensePlaceArray_C", (Mat, const PetscScalar *), (mat, array)); 17439566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 174447d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) 1745637a0070SStefano Zampini mat->offloadmask = PETSC_OFFLOAD_CPU; 1746637a0070SStefano Zampini #endif 17473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1748d3042a70SBarry Smith } 1749d3042a70SBarry Smith 1750d3042a70SBarry Smith /*@ 175111a5261eSBarry Smith MatDenseResetArray - Resets the matrix array to that it previously had before the call to `MatDensePlaceArray()` 1752d3042a70SBarry Smith 1753d3042a70SBarry Smith Not Collective 1754d3042a70SBarry Smith 17552fe279fdSBarry Smith Input Parameter: 1756d3042a70SBarry Smith . mat - the matrix 1757d3042a70SBarry Smith 17582ef1f0ffSBarry Smith Level: developer 17592ef1f0ffSBarry Smith 176011a5261eSBarry Smith Note: 176111a5261eSBarry Smith You can only call this after a call to `MatDensePlaceArray()` 1762d3042a70SBarry Smith 17631cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MatDenseGetArray()`, `MatDensePlaceArray()`, `VecPlaceArray()`, `VecGetArray()`, `VecRestoreArray()`, `VecReplaceArray()`, `VecResetArray()` 1764d3042a70SBarry Smith @*/ 1765d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseResetArray(Mat mat) 1766d71ae5a4SJacob Faibussowitsch { 1767d3042a70SBarry Smith PetscFunctionBegin; 1768d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 1769cac4c232SBarry Smith PetscUseMethod(mat, "MatDenseResetArray_C", (Mat), (mat)); 17709566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 17713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1772d3042a70SBarry Smith } 1773d3042a70SBarry Smith 1774d5ea218eSStefano Zampini /*@ 1775d5ea218eSStefano Zampini MatDenseReplaceArray - Allows one to replace the array in a dense matrix with an 1776d5ea218eSStefano Zampini array provided by the user. This is useful to avoid copying an array 1777d5ea218eSStefano Zampini into a matrix 1778d5ea218eSStefano Zampini 1779d5ea218eSStefano Zampini Not Collective 1780d5ea218eSStefano Zampini 1781d5ea218eSStefano Zampini Input Parameters: 1782d5ea218eSStefano Zampini + mat - the matrix 1783d5ea218eSStefano Zampini - array - the array in column major order 1784d5ea218eSStefano Zampini 17852ef1f0ffSBarry Smith Level: developer 17862ef1f0ffSBarry Smith 178711a5261eSBarry Smith Note: 178811a5261eSBarry Smith The memory passed in MUST be obtained with `PetscMalloc()` and CANNOT be 1789d5ea218eSStefano Zampini freed by the user. It will be freed when the matrix is destroyed. 1790d5ea218eSStefano Zampini 17911cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatDensePlaceArray()`, `MatDenseGetArray()`, `VecReplaceArray()` 1792d5ea218eSStefano Zampini @*/ 1793d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseReplaceArray(Mat mat, const PetscScalar *array) 1794d71ae5a4SJacob Faibussowitsch { 1795d5ea218eSStefano Zampini PetscFunctionBegin; 1796d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 1797cac4c232SBarry Smith PetscUseMethod(mat, "MatDenseReplaceArray_C", (Mat, const PetscScalar *), (mat, array)); 17989566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 179947d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) 1800d5ea218eSStefano Zampini mat->offloadmask = PETSC_OFFLOAD_CPU; 1801d5ea218eSStefano Zampini #endif 18023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1803d5ea218eSStefano Zampini } 1804d5ea218eSStefano Zampini 1805637a0070SStefano Zampini /*@C 180611a5261eSBarry Smith MatCreateDense - Creates a matrix in `MATDENSE` format. 18078965ea79SLois Curfman McInnes 1808d083f849SBarry Smith Collective 1809db81eaa0SLois Curfman McInnes 18108965ea79SLois Curfman McInnes Input Parameters: 1811db81eaa0SLois Curfman McInnes + comm - MPI communicator 18122ef1f0ffSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if `M` is given) 18132ef1f0ffSBarry Smith . n - number of local columns (or `PETSC_DECIDE` to have calculated if `N` is given) 18142ef1f0ffSBarry Smith . M - number of global rows (or `PETSC_DECIDE` to have calculated if `m` is given) 18152ef1f0ffSBarry Smith . N - number of global columns (or `PETSC_DECIDE` to have calculated if `n` is given) 18162ef1f0ffSBarry Smith - data - optional location of matrix data. Set data to `NULL` (`PETSC_NULL_SCALAR` for Fortran users) for PETSc 1817dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 18188965ea79SLois Curfman McInnes 18198965ea79SLois Curfman McInnes Output Parameter: 1820477f1c0bSLois Curfman McInnes . A - the matrix 18218965ea79SLois Curfman McInnes 18222ef1f0ffSBarry Smith Level: intermediate 18232ef1f0ffSBarry Smith 1824b259b22eSLois Curfman McInnes Notes: 18252ef1f0ffSBarry Smith The dense format is fully compatible with standard Fortran 182639ddd567SLois Curfman McInnes storage by columns. 182711a5261eSBarry Smith 182811a5261eSBarry Smith Although local portions of the matrix are stored in column-major 1829002bc6daSRichard Tran Mills order, the matrix is partitioned across MPI ranks by row. 18308965ea79SLois Curfman McInnes 183118f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 183218f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 18332ef1f0ffSBarry Smith set `data` to `NULL` (`PETSC_NULL_SCALAR` for Fortran users). 183418f449edSLois Curfman McInnes 18358965ea79SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 18368965ea79SLois Curfman McInnes (possibly both). 18378965ea79SLois Curfman McInnes 18381cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MatCreate()`, `MatCreateSeqDense()`, `MatSetValues()` 18398965ea79SLois Curfman McInnes @*/ 1840d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateDense(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscScalar *data, Mat *A) 1841d71ae5a4SJacob Faibussowitsch { 18423a40ed3dSBarry Smith PetscFunctionBegin; 18439566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 18449566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 18456f08ad05SPierre Jolivet PetscCall(MatSetType(*A, MATDENSE)); 18469566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(*A, data)); 18476f08ad05SPierre Jolivet PetscCall(MatMPIDenseSetPreallocation(*A, data)); 18483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18498965ea79SLois Curfman McInnes } 18508965ea79SLois Curfman McInnes 1851d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDuplicate_MPIDense(Mat A, MatDuplicateOption cpvalues, Mat *newmat) 1852d71ae5a4SJacob Faibussowitsch { 18538965ea79SLois Curfman McInnes Mat mat; 18543501a2bdSLois Curfman McInnes Mat_MPIDense *a, *oldmat = (Mat_MPIDense *)A->data; 18558965ea79SLois Curfman McInnes 18563a40ed3dSBarry Smith PetscFunctionBegin; 1857f4259b30SLisandro Dalcin *newmat = NULL; 18589566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &mat)); 18599566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N)); 18609566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)A)->type_name)); 1861834f8fabSBarry Smith a = (Mat_MPIDense *)mat->data; 18625aa7edbeSHong Zhang 1863d5f3da31SBarry Smith mat->factortype = A->factortype; 1864c456f294SBarry Smith mat->assembled = PETSC_TRUE; 1865273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 18668965ea79SLois Curfman McInnes 1867e0fa3b82SLois Curfman McInnes mat->insertmode = NOT_SET_VALUES; 18683782ba37SSatish Balay a->donotstash = oldmat->donotstash; 1869e04c1aa4SHong Zhang 18709566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->rmap, &mat->rmap)); 18719566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->cmap, &mat->cmap)); 18728965ea79SLois Curfman McInnes 18739566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 187401b82886SBarry Smith 18758965ea79SLois Curfman McInnes *newmat = mat; 18763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18778965ea79SLois Curfman McInnes } 18788965ea79SLois Curfman McInnes 1879*66976f2fSJacob Faibussowitsch static PetscErrorCode MatLoad_MPIDense(Mat newMat, PetscViewer viewer) 1880d71ae5a4SJacob Faibussowitsch { 188187d5ce66SSatish Balay PetscBool isbinary; 188287d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 188387d5ce66SSatish Balay PetscBool ishdf5; 188487d5ce66SSatish Balay #endif 1885eb91f321SVaclav Hapla 1886eb91f321SVaclav Hapla PetscFunctionBegin; 1887eb91f321SVaclav Hapla PetscValidHeaderSpecific(newMat, MAT_CLASSID, 1); 1888eb91f321SVaclav Hapla PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 1889eb91f321SVaclav Hapla /* force binary viewer to load .info file if it has not yet done so */ 18909566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 18919566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 189287d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 18939566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 189487d5ce66SSatish Balay #endif 1895eb91f321SVaclav Hapla if (isbinary) { 18969566063dSJacob Faibussowitsch PetscCall(MatLoad_Dense_Binary(newMat, viewer)); 1897eb91f321SVaclav Hapla #if defined(PETSC_HAVE_HDF5) 189887d5ce66SSatish Balay } else if (ishdf5) { 18999566063dSJacob Faibussowitsch PetscCall(MatLoad_Dense_HDF5(newMat, viewer)); 1900eb91f321SVaclav Hapla #endif 190198921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)newMat)->type_name); 19023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1903eb91f321SVaclav Hapla } 1904eb91f321SVaclav Hapla 1905d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatEqual_MPIDense(Mat A, Mat B, PetscBool *flag) 1906d71ae5a4SJacob Faibussowitsch { 19076e4ee0c6SHong Zhang Mat_MPIDense *matB = (Mat_MPIDense *)B->data, *matA = (Mat_MPIDense *)A->data; 19086e4ee0c6SHong Zhang Mat a, b; 190990ace30eSBarry Smith 19106e4ee0c6SHong Zhang PetscFunctionBegin; 19116e4ee0c6SHong Zhang a = matA->A; 19126e4ee0c6SHong Zhang b = matB->A; 19132cf15c64SPierre Jolivet PetscCall(MatEqual(a, b, flag)); 19142cf15c64SPierre Jolivet PetscCall(MPIU_Allreduce(MPI_IN_PLACE, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 19153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 19166e4ee0c6SHong Zhang } 191790ace30eSBarry Smith 1918*66976f2fSJacob Faibussowitsch static PetscErrorCode MatDestroy_MatTransMatMult_MPIDense_MPIDense(void *data) 1919d71ae5a4SJacob Faibussowitsch { 19206718818eSStefano Zampini Mat_TransMatMultDense *atb = (Mat_TransMatMultDense *)data; 1921baa3c1c6SHong Zhang 1922baa3c1c6SHong Zhang PetscFunctionBegin; 19239566063dSJacob Faibussowitsch PetscCall(PetscFree2(atb->sendbuf, atb->recvcounts)); 19249566063dSJacob Faibussowitsch PetscCall(MatDestroy(&atb->atb)); 19259566063dSJacob Faibussowitsch PetscCall(PetscFree(atb)); 19263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1927baa3c1c6SHong Zhang } 1928baa3c1c6SHong Zhang 1929*66976f2fSJacob Faibussowitsch static PetscErrorCode MatDestroy_MatMatTransMult_MPIDense_MPIDense(void *data) 1930d71ae5a4SJacob Faibussowitsch { 19316718818eSStefano Zampini Mat_MatTransMultDense *abt = (Mat_MatTransMultDense *)data; 1932cc48ffa7SToby Isaac 1933cc48ffa7SToby Isaac PetscFunctionBegin; 19349566063dSJacob Faibussowitsch PetscCall(PetscFree2(abt->buf[0], abt->buf[1])); 19359566063dSJacob Faibussowitsch PetscCall(PetscFree2(abt->recvcounts, abt->recvdispls)); 19369566063dSJacob Faibussowitsch PetscCall(PetscFree(abt)); 19373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1938cc48ffa7SToby Isaac } 1939cc48ffa7SToby Isaac 1940d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat A, Mat B, Mat C) 1941d71ae5a4SJacob Faibussowitsch { 1942baa3c1c6SHong Zhang Mat_MPIDense *a = (Mat_MPIDense *)A->data, *b = (Mat_MPIDense *)B->data, *c = (Mat_MPIDense *)C->data; 19436718818eSStefano Zampini Mat_TransMatMultDense *atb; 1944cb20be35SHong Zhang MPI_Comm comm; 19456718818eSStefano Zampini PetscMPIInt size, *recvcounts; 19466718818eSStefano Zampini PetscScalar *carray, *sendbuf; 1947637a0070SStefano Zampini const PetscScalar *atbarray; 1948a1f9a5e6SStefano Zampini PetscInt i, cN = C->cmap->N, proc, k, j, lda; 1949e68c0b26SHong Zhang const PetscInt *ranges; 1950cb20be35SHong Zhang 1951cb20be35SHong Zhang PetscFunctionBegin; 19526718818eSStefano Zampini MatCheckProduct(C, 3); 19535f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 19546718818eSStefano Zampini atb = (Mat_TransMatMultDense *)C->product->data; 19556718818eSStefano Zampini recvcounts = atb->recvcounts; 19566718818eSStefano Zampini sendbuf = atb->sendbuf; 19576718818eSStefano Zampini 19589566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 19599566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 1960e68c0b26SHong Zhang 1961c5ef1628SHong Zhang /* compute atbarray = aseq^T * bseq */ 19629566063dSJacob Faibussowitsch PetscCall(MatTransposeMatMult(a->A, b->A, atb->atb ? MAT_REUSE_MATRIX : MAT_INITIAL_MATRIX, PETSC_DEFAULT, &atb->atb)); 1963cb20be35SHong Zhang 19649566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRanges(C, &ranges)); 1965cb20be35SHong Zhang 1966660d5466SHong Zhang /* arrange atbarray into sendbuf */ 19679566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(atb->atb, &atbarray)); 19689566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(atb->atb, &lda)); 1969637a0070SStefano Zampini for (proc = 0, k = 0; proc < size; proc++) { 1970baa3c1c6SHong Zhang for (j = 0; j < cN; j++) { 1971a1f9a5e6SStefano Zampini for (i = ranges[proc]; i < ranges[proc + 1]; i++) sendbuf[k++] = atbarray[i + j * lda]; 1972cb20be35SHong Zhang } 1973cb20be35SHong Zhang } 19749566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(atb->atb, &atbarray)); 1975637a0070SStefano Zampini 1976c5ef1628SHong Zhang /* sum all atbarray to local values of C */ 19779566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(c->A, &carray)); 19789566063dSJacob Faibussowitsch PetscCallMPI(MPI_Reduce_scatter(sendbuf, carray, recvcounts, MPIU_SCALAR, MPIU_SUM, comm)); 19799566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(c->A, &carray)); 19809566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 19819566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 19823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1983cb20be35SHong Zhang } 1984cb20be35SHong Zhang 1985d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat A, Mat B, PetscReal fill, Mat C) 1986d71ae5a4SJacob Faibussowitsch { 1987cb20be35SHong Zhang MPI_Comm comm; 1988baa3c1c6SHong Zhang PetscMPIInt size; 1989660d5466SHong Zhang PetscInt cm = A->cmap->n, cM, cN = B->cmap->N; 1990baa3c1c6SHong Zhang Mat_TransMatMultDense *atb; 199147d993e7Ssuyashtn PetscBool cisdense = PETSC_FALSE; 19920acaeb71SStefano Zampini PetscInt i; 19930acaeb71SStefano Zampini const PetscInt *ranges; 1994cb20be35SHong Zhang 1995cb20be35SHong Zhang PetscFunctionBegin; 19968f83a4d9SJacob Faibussowitsch MatCheckProduct(C, 4); 19975f80ce2aSJacob Faibussowitsch PetscCheck(!C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty"); 19989566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 1999cb20be35SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) { 200098921bdaSJacob Faibussowitsch SETERRQ(comm, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != B (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->rstart, A->rmap->rend, B->rmap->rstart, B->rmap->rend); 2001cb20be35SHong Zhang } 2002cb20be35SHong Zhang 20034222ddf1SHong Zhang /* create matrix product C */ 20049566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, cm, B->cmap->n, A->cmap->N, B->cmap->N)); 200547d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) 20069566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATMPIDENSE, MATMPIDENSECUDA, "")); 200747d993e7Ssuyashtn #endif 200847d993e7Ssuyashtn #if defined(PETSC_HAVE_HIP) 200947d993e7Ssuyashtn PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATMPIDENSE, MATMPIDENSEHIP, "")); 201047d993e7Ssuyashtn #endif 201148a46eb9SPierre Jolivet if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)A)->type_name)); 20129566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 2013baa3c1c6SHong Zhang 20144222ddf1SHong Zhang /* create data structure for reuse C */ 20159566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 20169566063dSJacob Faibussowitsch PetscCall(PetscNew(&atb)); 20174222ddf1SHong Zhang cM = C->rmap->N; 20189566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(cM * cN, &atb->sendbuf, size, &atb->recvcounts)); 20199566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRanges(C, &ranges)); 20200acaeb71SStefano Zampini for (i = 0; i < size; i++) atb->recvcounts[i] = (ranges[i + 1] - ranges[i]) * cN; 2021baa3c1c6SHong Zhang 20226718818eSStefano Zampini C->product->data = atb; 20236718818eSStefano Zampini C->product->destroy = MatDestroy_MatTransMatMult_MPIDense_MPIDense; 20243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2025cb20be35SHong Zhang } 2026cb20be35SHong Zhang 2027d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat A, Mat B, PetscReal fill, Mat C) 2028d71ae5a4SJacob Faibussowitsch { 2029cc48ffa7SToby Isaac MPI_Comm comm; 2030cc48ffa7SToby Isaac PetscMPIInt i, size; 2031cc48ffa7SToby Isaac PetscInt maxRows, bufsiz; 2032cc48ffa7SToby Isaac PetscMPIInt tag; 20334222ddf1SHong Zhang PetscInt alg; 2034cc48ffa7SToby Isaac Mat_MatTransMultDense *abt; 20354222ddf1SHong Zhang Mat_Product *product = C->product; 20364222ddf1SHong Zhang PetscBool flg; 2037cc48ffa7SToby Isaac 2038cc48ffa7SToby Isaac PetscFunctionBegin; 20396718818eSStefano Zampini MatCheckProduct(C, 4); 20405f80ce2aSJacob Faibussowitsch PetscCheck(!C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty"); 20414222ddf1SHong Zhang /* check local size of A and B */ 20425f80ce2aSJacob Faibussowitsch PetscCheck(A->cmap->n == B->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local column dimensions are incompatible, A (%" PetscInt_FMT ") != B (%" PetscInt_FMT ")", A->cmap->n, B->cmap->n); 2043cc48ffa7SToby Isaac 20449566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg, "allgatherv", &flg)); 2045637a0070SStefano Zampini alg = flg ? 0 : 1; 2046cc48ffa7SToby Isaac 20474222ddf1SHong Zhang /* setup matrix product C */ 20489566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, A->rmap->n, B->rmap->n, A->rmap->N, B->rmap->N)); 20499566063dSJacob Faibussowitsch PetscCall(MatSetType(C, MATMPIDENSE)); 20509566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 20519566063dSJacob Faibussowitsch PetscCall(PetscObjectGetNewTag((PetscObject)C, &tag)); 20524222ddf1SHong Zhang 20534222ddf1SHong Zhang /* create data structure for reuse C */ 20549566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C, &comm)); 20559566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 20569566063dSJacob Faibussowitsch PetscCall(PetscNew(&abt)); 2057cc48ffa7SToby Isaac abt->tag = tag; 2058faa55883SToby Isaac abt->alg = alg; 2059faa55883SToby Isaac switch (alg) { 20604222ddf1SHong Zhang case 1: /* alg: "cyclic" */ 2061cc48ffa7SToby Isaac for (maxRows = 0, i = 0; i < size; i++) maxRows = PetscMax(maxRows, (B->rmap->range[i + 1] - B->rmap->range[i])); 2062cc48ffa7SToby Isaac bufsiz = A->cmap->N * maxRows; 20639566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(bufsiz, &(abt->buf[0]), bufsiz, &(abt->buf[1]))); 2064faa55883SToby Isaac break; 20654222ddf1SHong Zhang default: /* alg: "allgatherv" */ 20669566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(B->rmap->n * B->cmap->N, &(abt->buf[0]), B->rmap->N * B->cmap->N, &(abt->buf[1]))); 20679566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(size, &(abt->recvcounts), size + 1, &(abt->recvdispls))); 2068faa55883SToby Isaac for (i = 0; i <= size; i++) abt->recvdispls[i] = B->rmap->range[i] * A->cmap->N; 2069faa55883SToby Isaac for (i = 0; i < size; i++) abt->recvcounts[i] = abt->recvdispls[i + 1] - abt->recvdispls[i]; 2070faa55883SToby Isaac break; 2071faa55883SToby Isaac } 2072cc48ffa7SToby Isaac 20736718818eSStefano Zampini C->product->data = abt; 20746718818eSStefano Zampini C->product->destroy = MatDestroy_MatMatTransMult_MPIDense_MPIDense; 20754222ddf1SHong Zhang C->ops->mattransposemultnumeric = MatMatTransposeMultNumeric_MPIDense_MPIDense; 20763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2077cc48ffa7SToby Isaac } 2078cc48ffa7SToby Isaac 2079d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(Mat A, Mat B, Mat C) 2080d71ae5a4SJacob Faibussowitsch { 2081cc48ffa7SToby Isaac Mat_MPIDense *a = (Mat_MPIDense *)A->data, *b = (Mat_MPIDense *)B->data, *c = (Mat_MPIDense *)C->data; 20826718818eSStefano Zampini Mat_MatTransMultDense *abt; 2083cc48ffa7SToby Isaac MPI_Comm comm; 2084cc48ffa7SToby Isaac PetscMPIInt rank, size, sendsiz, recvsiz, sendto, recvfrom, recvisfrom; 2085f4259b30SLisandro Dalcin PetscScalar *sendbuf, *recvbuf = NULL, *cv; 2086cc48ffa7SToby Isaac PetscInt i, cK = A->cmap->N, k, j, bn; 2087cc48ffa7SToby Isaac PetscScalar _DOne = 1.0, _DZero = 0.0; 2088637a0070SStefano Zampini const PetscScalar *av, *bv; 208923fff9afSBarry Smith PetscBLASInt cm, cn, ck, alda, blda = 0, clda; 2090cc48ffa7SToby Isaac MPI_Request reqs[2]; 2091cc48ffa7SToby Isaac const PetscInt *ranges; 2092cc48ffa7SToby Isaac 2093cc48ffa7SToby Isaac PetscFunctionBegin; 20946718818eSStefano Zampini MatCheckProduct(C, 3); 20955f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 20966718818eSStefano Zampini abt = (Mat_MatTransMultDense *)C->product->data; 20979566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C, &comm)); 20989566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 20999566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 21009566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A, &av)); 21019566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(b->A, &bv)); 21029566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(c->A, &cv)); 21039566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &i)); 21049566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i, &alda)); 21059566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(b->A, &i)); 21069566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i, &blda)); 21079566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(c->A, &i)); 21089566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i, &clda)); 21099566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRanges(B, &ranges)); 2110cc48ffa7SToby Isaac bn = B->rmap->n; 2111637a0070SStefano Zampini if (blda == bn) { 2112637a0070SStefano Zampini sendbuf = (PetscScalar *)bv; 2113cc48ffa7SToby Isaac } else { 2114cc48ffa7SToby Isaac sendbuf = abt->buf[0]; 2115cc48ffa7SToby Isaac for (k = 0, i = 0; i < cK; i++) { 2116ad540459SPierre Jolivet for (j = 0; j < bn; j++, k++) sendbuf[k] = bv[i * blda + j]; 2117cc48ffa7SToby Isaac } 2118cc48ffa7SToby Isaac } 2119cc48ffa7SToby Isaac if (size > 1) { 2120cc48ffa7SToby Isaac sendto = (rank + size - 1) % size; 2121cc48ffa7SToby Isaac recvfrom = (rank + size + 1) % size; 2122cc48ffa7SToby Isaac } else { 2123cc48ffa7SToby Isaac sendto = recvfrom = 0; 2124cc48ffa7SToby Isaac } 21259566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(cK, &ck)); 21269566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(c->A->rmap->n, &cm)); 2127cc48ffa7SToby Isaac recvisfrom = rank; 2128cc48ffa7SToby Isaac for (i = 0; i < size; i++) { 2129cc48ffa7SToby Isaac /* we have finished receiving in sending, bufs can be read/modified */ 2130cc48ffa7SToby Isaac PetscInt nextrecvisfrom = (recvisfrom + 1) % size; /* which process the next recvbuf will originate on */ 2131cc48ffa7SToby Isaac PetscInt nextbn = ranges[nextrecvisfrom + 1] - ranges[nextrecvisfrom]; 2132cc48ffa7SToby Isaac 2133cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2134cc48ffa7SToby Isaac /* start the cyclic sends from sendbuf, to recvbuf (which will switch to sendbuf) */ 2135cc48ffa7SToby Isaac sendsiz = cK * bn; 2136cc48ffa7SToby Isaac recvsiz = cK * nextbn; 2137cc48ffa7SToby Isaac recvbuf = (i & 1) ? abt->buf[0] : abt->buf[1]; 21389566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(sendbuf, sendsiz, MPIU_SCALAR, sendto, abt->tag, comm, &reqs[0])); 21399566063dSJacob Faibussowitsch PetscCallMPI(MPI_Irecv(recvbuf, recvsiz, MPIU_SCALAR, recvfrom, abt->tag, comm, &reqs[1])); 2140cc48ffa7SToby Isaac } 2141cc48ffa7SToby Isaac 2142cc48ffa7SToby Isaac /* local aseq * sendbuf^T */ 21439566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(ranges[recvisfrom + 1] - ranges[recvisfrom], &cn)); 2144792fecdfSBarry Smith if (cm && cn && ck) PetscCallBLAS("BLASgemm", BLASgemm_("N", "T", &cm, &cn, &ck, &_DOne, av, &alda, sendbuf, &cn, &_DZero, cv + clda * ranges[recvisfrom], &clda)); 2145cc48ffa7SToby Isaac 2146cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2147cc48ffa7SToby Isaac /* wait for the sends and receives to complete, swap sendbuf and recvbuf */ 21489566063dSJacob Faibussowitsch PetscCallMPI(MPI_Waitall(2, reqs, MPI_STATUSES_IGNORE)); 2149cc48ffa7SToby Isaac } 2150cc48ffa7SToby Isaac bn = nextbn; 2151cc48ffa7SToby Isaac recvisfrom = nextrecvisfrom; 2152cc48ffa7SToby Isaac sendbuf = recvbuf; 2153cc48ffa7SToby Isaac } 21549566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A, &av)); 21559566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(b->A, &bv)); 21569566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(c->A, &cv)); 21579566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 21589566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 21593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2160cc48ffa7SToby Isaac } 2161cc48ffa7SToby Isaac 2162d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(Mat A, Mat B, Mat C) 2163d71ae5a4SJacob Faibussowitsch { 2164faa55883SToby Isaac Mat_MPIDense *a = (Mat_MPIDense *)A->data, *b = (Mat_MPIDense *)B->data, *c = (Mat_MPIDense *)C->data; 21656718818eSStefano Zampini Mat_MatTransMultDense *abt; 2166faa55883SToby Isaac MPI_Comm comm; 2167637a0070SStefano Zampini PetscMPIInt size; 2168637a0070SStefano Zampini PetscScalar *cv, *sendbuf, *recvbuf; 2169637a0070SStefano Zampini const PetscScalar *av, *bv; 2170637a0070SStefano Zampini PetscInt blda, i, cK = A->cmap->N, k, j, bn; 2171faa55883SToby Isaac PetscScalar _DOne = 1.0, _DZero = 0.0; 2172637a0070SStefano Zampini PetscBLASInt cm, cn, ck, alda, clda; 2173faa55883SToby Isaac 2174faa55883SToby Isaac PetscFunctionBegin; 21756718818eSStefano Zampini MatCheckProduct(C, 3); 21765f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 21776718818eSStefano Zampini abt = (Mat_MatTransMultDense *)C->product->data; 21789566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 21799566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 21809566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A, &av)); 21819566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(b->A, &bv)); 21829566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(c->A, &cv)); 21839566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &i)); 21849566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i, &alda)); 21859566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(b->A, &blda)); 21869566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(c->A, &i)); 21879566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i, &clda)); 2188faa55883SToby Isaac /* copy transpose of B into buf[0] */ 2189faa55883SToby Isaac bn = B->rmap->n; 2190faa55883SToby Isaac sendbuf = abt->buf[0]; 2191faa55883SToby Isaac recvbuf = abt->buf[1]; 2192faa55883SToby Isaac for (k = 0, j = 0; j < bn; j++) { 2193ad540459SPierre Jolivet for (i = 0; i < cK; i++, k++) sendbuf[k] = bv[i * blda + j]; 2194faa55883SToby Isaac } 21959566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(b->A, &bv)); 21969566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgatherv(sendbuf, bn * cK, MPIU_SCALAR, recvbuf, abt->recvcounts, abt->recvdispls, MPIU_SCALAR, comm)); 21979566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(cK, &ck)); 21989566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(c->A->rmap->n, &cm)); 21999566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(c->A->cmap->n, &cn)); 2200792fecdfSBarry Smith if (cm && cn && ck) PetscCallBLAS("BLASgemm", BLASgemm_("N", "N", &cm, &cn, &ck, &_DOne, av, &alda, recvbuf, &ck, &_DZero, cv, &clda)); 22019566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A, &av)); 22029566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(b->A, &bv)); 22039566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(c->A, &cv)); 22049566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 22059566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 22063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2207faa55883SToby Isaac } 2208faa55883SToby Isaac 2209d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat A, Mat B, Mat C) 2210d71ae5a4SJacob Faibussowitsch { 22116718818eSStefano Zampini Mat_MatTransMultDense *abt; 2212faa55883SToby Isaac 2213faa55883SToby Isaac PetscFunctionBegin; 22146718818eSStefano Zampini MatCheckProduct(C, 3); 22155f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 22166718818eSStefano Zampini abt = (Mat_MatTransMultDense *)C->product->data; 2217faa55883SToby Isaac switch (abt->alg) { 2218d71ae5a4SJacob Faibussowitsch case 1: 2219d71ae5a4SJacob Faibussowitsch PetscCall(MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(A, B, C)); 2220d71ae5a4SJacob Faibussowitsch break; 2221d71ae5a4SJacob Faibussowitsch default: 2222d71ae5a4SJacob Faibussowitsch PetscCall(MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(A, B, C)); 2223d71ae5a4SJacob Faibussowitsch break; 2224faa55883SToby Isaac } 22253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2226faa55883SToby Isaac } 2227faa55883SToby Isaac 2228*66976f2fSJacob Faibussowitsch #if defined(PETSC_HAVE_ELEMENTAL) 2229*66976f2fSJacob Faibussowitsch static PetscErrorCode MatDestroy_MatMatMult_MPIDense_MPIDense(void *data) 2230d71ae5a4SJacob Faibussowitsch { 22316718818eSStefano Zampini Mat_MatMultDense *ab = (Mat_MatMultDense *)data; 2232320f2790SHong Zhang 2233320f2790SHong Zhang PetscFunctionBegin; 22349566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ab->Ce)); 22359566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ab->Ae)); 22369566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ab->Be)); 22379566063dSJacob Faibussowitsch PetscCall(PetscFree(ab)); 22383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2239320f2790SHong Zhang } 2240320f2790SHong Zhang 2241d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultNumeric_MPIDense_MPIDense(Mat A, Mat B, Mat C) 2242d71ae5a4SJacob Faibussowitsch { 22436718818eSStefano Zampini Mat_MatMultDense *ab; 2244320f2790SHong Zhang 2245320f2790SHong Zhang PetscFunctionBegin; 22466718818eSStefano Zampini MatCheckProduct(C, 3); 22475f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Missing product data"); 22486718818eSStefano Zampini ab = (Mat_MatMultDense *)C->product->data; 22499566063dSJacob Faibussowitsch PetscCall(MatConvert_MPIDense_Elemental(A, MATELEMENTAL, MAT_REUSE_MATRIX, &ab->Ae)); 22509566063dSJacob Faibussowitsch PetscCall(MatConvert_MPIDense_Elemental(B, MATELEMENTAL, MAT_REUSE_MATRIX, &ab->Be)); 22519566063dSJacob Faibussowitsch PetscCall(MatMatMultNumeric_Elemental(ab->Ae, ab->Be, ab->Ce)); 22529566063dSJacob Faibussowitsch PetscCall(MatConvert(ab->Ce, MATMPIDENSE, MAT_REUSE_MATRIX, &C)); 22533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2254320f2790SHong Zhang } 2255320f2790SHong Zhang 2256d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIDense(Mat A, Mat B, PetscReal fill, Mat C) 2257d71ae5a4SJacob Faibussowitsch { 2258320f2790SHong Zhang Mat Ae, Be, Ce; 2259320f2790SHong Zhang Mat_MatMultDense *ab; 2260320f2790SHong Zhang 2261320f2790SHong Zhang PetscFunctionBegin; 22626718818eSStefano Zampini MatCheckProduct(C, 4); 22635f80ce2aSJacob Faibussowitsch PetscCheck(!C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty"); 22644222ddf1SHong Zhang /* check local size of A and B */ 2265320f2790SHong Zhang if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend) { 226698921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != B (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->rstart, A->rmap->rend, B->rmap->rstart, B->rmap->rend); 2267320f2790SHong Zhang } 2268320f2790SHong Zhang 22694222ddf1SHong Zhang /* create elemental matrices Ae and Be */ 22709566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &Ae)); 22719566063dSJacob Faibussowitsch PetscCall(MatSetSizes(Ae, PETSC_DECIDE, PETSC_DECIDE, A->rmap->N, A->cmap->N)); 22729566063dSJacob Faibussowitsch PetscCall(MatSetType(Ae, MATELEMENTAL)); 22739566063dSJacob Faibussowitsch PetscCall(MatSetUp(Ae)); 22749566063dSJacob Faibussowitsch PetscCall(MatSetOption(Ae, MAT_ROW_ORIENTED, PETSC_FALSE)); 2275320f2790SHong Zhang 22769566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)B), &Be)); 22779566063dSJacob Faibussowitsch PetscCall(MatSetSizes(Be, PETSC_DECIDE, PETSC_DECIDE, B->rmap->N, B->cmap->N)); 22789566063dSJacob Faibussowitsch PetscCall(MatSetType(Be, MATELEMENTAL)); 22799566063dSJacob Faibussowitsch PetscCall(MatSetUp(Be)); 22809566063dSJacob Faibussowitsch PetscCall(MatSetOption(Be, MAT_ROW_ORIENTED, PETSC_FALSE)); 2281320f2790SHong Zhang 22824222ddf1SHong Zhang /* compute symbolic Ce = Ae*Be */ 22839566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)C), &Ce)); 22849566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_Elemental(Ae, Be, fill, Ce)); 22854222ddf1SHong Zhang 22864222ddf1SHong Zhang /* setup C */ 22879566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, A->rmap->n, B->cmap->n, PETSC_DECIDE, PETSC_DECIDE)); 22889566063dSJacob Faibussowitsch PetscCall(MatSetType(C, MATDENSE)); 22899566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 2290320f2790SHong Zhang 2291320f2790SHong Zhang /* create data structure for reuse Cdense */ 22929566063dSJacob Faibussowitsch PetscCall(PetscNew(&ab)); 2293320f2790SHong Zhang ab->Ae = Ae; 2294320f2790SHong Zhang ab->Be = Be; 2295320f2790SHong Zhang ab->Ce = Ce; 22966718818eSStefano Zampini 22976718818eSStefano Zampini C->product->data = ab; 22986718818eSStefano Zampini C->product->destroy = MatDestroy_MatMatMult_MPIDense_MPIDense; 22994222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIDense; 23003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2301320f2790SHong Zhang } 23024222ddf1SHong Zhang #endif 23032ef1f0ffSBarry Smith 23044222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 2305d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_AB(Mat C) 2306d71ae5a4SJacob Faibussowitsch { 2307320f2790SHong Zhang PetscFunctionBegin; 23084222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIDense; 23094222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 23103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2311320f2790SHong Zhang } 23125242a7b1SHong Zhang #endif 231386aefd0dSHong Zhang 2314d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_AtB(Mat C) 2315d71ae5a4SJacob Faibussowitsch { 23164222ddf1SHong Zhang Mat_Product *product = C->product; 23174222ddf1SHong Zhang Mat A = product->A, B = product->B; 23184222ddf1SHong Zhang 23194222ddf1SHong Zhang PetscFunctionBegin; 23204222ddf1SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) 232198921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->rstart, A->rmap->rend, B->rmap->rstart, B->rmap->rend); 23226718818eSStefano Zampini C->ops->transposematmultsymbolic = MatTransposeMatMultSymbolic_MPIDense_MPIDense; 23236718818eSStefano Zampini C->ops->productsymbolic = MatProductSymbolic_AtB; 23243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23254222ddf1SHong Zhang } 23264222ddf1SHong Zhang 2327d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_ABt(Mat C) 2328d71ae5a4SJacob Faibussowitsch { 23294222ddf1SHong Zhang Mat_Product *product = C->product; 23304222ddf1SHong Zhang const char *algTypes[2] = {"allgatherv", "cyclic"}; 23314222ddf1SHong Zhang PetscInt alg, nalg = 2; 23324222ddf1SHong Zhang PetscBool flg = PETSC_FALSE; 23334222ddf1SHong Zhang 23344222ddf1SHong Zhang PetscFunctionBegin; 23354222ddf1SHong Zhang /* Set default algorithm */ 23364222ddf1SHong Zhang alg = 0; /* default is allgatherv */ 23379566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg, "default", &flg)); 233848a46eb9SPierre Jolivet if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 23394222ddf1SHong Zhang 23404222ddf1SHong Zhang /* Get runtime option */ 23414222ddf1SHong Zhang if (product->api_user) { 2342d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatTransposeMult", "Mat"); 23439566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-matmattransmult_mpidense_mpidense_via", "Algorithmic approach", "MatMatTransposeMult", algTypes, nalg, algTypes[alg], &alg, &flg)); 2344d0609cedSBarry Smith PetscOptionsEnd(); 23454222ddf1SHong Zhang } else { 2346d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_ABt", "Mat"); 23479566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatProduct_ABt", algTypes, nalg, algTypes[alg], &alg, &flg)); 2348d0609cedSBarry Smith PetscOptionsEnd(); 23494222ddf1SHong Zhang } 235048a46eb9SPierre Jolivet if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 23514222ddf1SHong Zhang 23524222ddf1SHong Zhang C->ops->mattransposemultsymbolic = MatMatTransposeMultSymbolic_MPIDense_MPIDense; 23534222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_ABt; 23543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23554222ddf1SHong Zhang } 23564222ddf1SHong Zhang 2357d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense(Mat C) 2358d71ae5a4SJacob Faibussowitsch { 23594222ddf1SHong Zhang Mat_Product *product = C->product; 23604222ddf1SHong Zhang 23614222ddf1SHong Zhang PetscFunctionBegin; 23624222ddf1SHong Zhang switch (product->type) { 23634222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 2364d71ae5a4SJacob Faibussowitsch case MATPRODUCT_AB: 2365d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIDense_AB(C)); 2366d71ae5a4SJacob Faibussowitsch break; 23674222ddf1SHong Zhang #endif 2368d71ae5a4SJacob Faibussowitsch case MATPRODUCT_AtB: 2369d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIDense_AtB(C)); 2370d71ae5a4SJacob Faibussowitsch break; 2371d71ae5a4SJacob Faibussowitsch case MATPRODUCT_ABt: 2372d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIDense_ABt(C)); 2373d71ae5a4SJacob Faibussowitsch break; 2374d71ae5a4SJacob Faibussowitsch default: 2375d71ae5a4SJacob Faibussowitsch break; 23764222ddf1SHong Zhang } 23773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23784222ddf1SHong Zhang } 2379