1be1d678aSKris Buschelman 2ed3cc1f0SBarry Smith /* 3ed3cc1f0SBarry Smith Basic functions for basic parallel dense matrices. 4ed3cc1f0SBarry Smith */ 5ed3cc1f0SBarry Smith 6c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h> /*I "petscmat.h" I*/ 78949adfdSHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 8baa3c1c6SHong Zhang #include <petscblaslapack.h> 98965ea79SLois Curfman McInnes 10ab92ecdeSBarry Smith /*@ 11ab92ecdeSBarry Smith 12ab92ecdeSBarry Smith MatDenseGetLocalMatrix - For a MATMPIDENSE or MATSEQDENSE matrix returns the sequential 13ab92ecdeSBarry Smith matrix that represents the operator. For sequential matrices it returns itself. 14ab92ecdeSBarry Smith 15ab92ecdeSBarry Smith Input Parameter: 16ab92ecdeSBarry Smith . A - the Seq or MPI dense matrix 17ab92ecdeSBarry Smith 18ab92ecdeSBarry Smith Output Parameter: 19ab92ecdeSBarry Smith . B - the inner matrix 20ab92ecdeSBarry Smith 218e6c10adSSatish Balay Level: intermediate 228e6c10adSSatish Balay 23ab92ecdeSBarry Smith @*/ 24ab92ecdeSBarry Smith PetscErrorCode MatDenseGetLocalMatrix(Mat A,Mat *B) 25ab92ecdeSBarry Smith { 26ab92ecdeSBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 27ace3abfcSBarry Smith PetscBool flg; 28ab92ecdeSBarry Smith 29ab92ecdeSBarry Smith PetscFunctionBegin; 30d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 31d5ea218eSStefano Zampini PetscValidPointer(B,2); 329566063dSJacob Faibussowitsch PetscCall(PetscObjectBaseTypeCompare((PetscObject)A,MATMPIDENSE,&flg)); 332205254eSKarl Rupp if (flg) *B = mat->A; 34f140bc17SStefano Zampini else { 359566063dSJacob Faibussowitsch PetscCall(PetscObjectBaseTypeCompare((PetscObject)A,MATSEQDENSE,&flg)); 3628b400f6SJacob Faibussowitsch PetscCheck(flg,PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Not for matrix type %s",((PetscObject)A)->type_name); 37f140bc17SStefano Zampini *B = A; 38f140bc17SStefano Zampini } 39ab92ecdeSBarry Smith PetscFunctionReturn(0); 40ab92ecdeSBarry Smith } 41ab92ecdeSBarry Smith 42a76f77c3SStefano Zampini PetscErrorCode MatCopy_MPIDense(Mat A, Mat B, MatStructure s) 43a76f77c3SStefano Zampini { 44a76f77c3SStefano Zampini Mat_MPIDense *Amat = (Mat_MPIDense*)A->data; 45a76f77c3SStefano Zampini Mat_MPIDense *Bmat = (Mat_MPIDense*)B->data; 46a76f77c3SStefano Zampini 47a76f77c3SStefano Zampini PetscFunctionBegin; 489566063dSJacob Faibussowitsch PetscCall(MatCopy(Amat->A,Bmat->A,s)); 49a76f77c3SStefano Zampini PetscFunctionReturn(0); 50a76f77c3SStefano Zampini } 51a76f77c3SStefano Zampini 52ba8c8a56SBarry Smith PetscErrorCode MatGetRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 53ba8c8a56SBarry Smith { 54ba8c8a56SBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 55d0f46423SBarry Smith PetscInt lrow,rstart = A->rmap->rstart,rend = A->rmap->rend; 56ba8c8a56SBarry Smith 57ba8c8a56SBarry Smith PetscFunctionBegin; 582c71b3e2SJacob Faibussowitsch PetscCheckFalse(row < rstart || row >= rend,PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows"); 59ba8c8a56SBarry Smith lrow = row - rstart; 609566063dSJacob Faibussowitsch PetscCall(MatGetRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v)); 61ba8c8a56SBarry Smith PetscFunctionReturn(0); 62ba8c8a56SBarry Smith } 63ba8c8a56SBarry Smith 64637a0070SStefano Zampini PetscErrorCode MatRestoreRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 65ba8c8a56SBarry Smith { 66637a0070SStefano Zampini Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 67637a0070SStefano Zampini PetscInt lrow,rstart = A->rmap->rstart,rend = A->rmap->rend; 68ba8c8a56SBarry Smith 69ba8c8a56SBarry Smith PetscFunctionBegin; 702c71b3e2SJacob Faibussowitsch PetscCheckFalse(row < rstart || row >= rend,PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows"); 71637a0070SStefano Zampini lrow = row - rstart; 729566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v)); 73ba8c8a56SBarry Smith PetscFunctionReturn(0); 74ba8c8a56SBarry Smith } 75ba8c8a56SBarry Smith 7611bd1e4dSLisandro Dalcin PetscErrorCode MatGetDiagonalBlock_MPIDense(Mat A,Mat *a) 770de54da6SSatish Balay { 780de54da6SSatish Balay Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 79d0f46423SBarry Smith PetscInt m = A->rmap->n,rstart = A->rmap->rstart; 8087828ca2SBarry Smith PetscScalar *array; 810de54da6SSatish Balay MPI_Comm comm; 824b6ae80fSStefano Zampini PetscBool flg; 8311bd1e4dSLisandro Dalcin Mat B; 840de54da6SSatish Balay 850de54da6SSatish Balay PetscFunctionBegin; 869566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A,&flg)); 8728b400f6SJacob Faibussowitsch PetscCheck(flg,PETSC_COMM_SELF,PETSC_ERR_SUP,"Only square matrices supported."); 889566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)A,"DiagonalBlock",(PetscObject*)&B)); 89616b8fbbSStefano Zampini if (!B) { /* This should use MatDenseGetSubMatrix (not create), but we would need a call like MatRestoreDiagonalBlock */ 904b6ae80fSStefano Zampini 919566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)mdn->A,MATSEQDENSECUDA,&flg)); 9228b400f6SJacob Faibussowitsch PetscCheck(!flg,PETSC_COMM_SELF,PETSC_ERR_SUP,"Not coded for %s. Send an email to petsc-dev@mcs.anl.gov to request this feature",MATSEQDENSECUDA); 939566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)(mdn->A),&comm)); 949566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,&B)); 959566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B,m,m,m,m)); 969566063dSJacob Faibussowitsch PetscCall(MatSetType(B,((PetscObject)mdn->A)->type_name)); 979566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(mdn->A,(const PetscScalar**)&array)); 989566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(B,array+m*rstart)); 999566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(mdn->A,(const PetscScalar**)&array)); 1009566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY)); 1019566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY)); 1029566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)A,"DiagonalBlock",(PetscObject)B)); 10311bd1e4dSLisandro Dalcin *a = B; 1049566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 1052205254eSKarl Rupp } else *a = B; 1060de54da6SSatish Balay PetscFunctionReturn(0); 1070de54da6SSatish Balay } 1080de54da6SSatish Balay 10913f74950SBarry Smith PetscErrorCode MatSetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],const PetscScalar v[],InsertMode addv) 1108965ea79SLois Curfman McInnes { 11139b7565bSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)mat->data; 112d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 113ace3abfcSBarry Smith PetscBool roworiented = A->roworiented; 1148965ea79SLois Curfman McInnes 1153a40ed3dSBarry Smith PetscFunctionBegin; 1168965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 1175ef9f2a5SBarry Smith if (idxm[i] < 0) continue; 11808401ef6SPierre Jolivet PetscCheck(idxm[i] < mat->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 1198965ea79SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 1208965ea79SLois Curfman McInnes row = idxm[i] - rstart; 12139b7565bSBarry Smith if (roworiented) { 1229566063dSJacob Faibussowitsch PetscCall(MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv)); 1233a40ed3dSBarry Smith } else { 1248965ea79SLois Curfman McInnes for (j=0; j<n; j++) { 1255ef9f2a5SBarry Smith if (idxn[j] < 0) continue; 12608401ef6SPierre Jolivet PetscCheck(idxn[j] < mat->cmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 1279566063dSJacob Faibussowitsch PetscCall(MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv)); 12839b7565bSBarry Smith } 1298965ea79SLois Curfman McInnes } 1302205254eSKarl Rupp } else if (!A->donotstash) { 1315080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 13239b7565bSBarry Smith if (roworiented) { 1339566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash,idxm[i],n,idxn,v+i*n,PETSC_FALSE)); 134d36fbae8SSatish Balay } else { 1359566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash,idxm[i],n,idxn,v+i,m,PETSC_FALSE)); 13639b7565bSBarry Smith } 137b49de8d1SLois Curfman McInnes } 138b49de8d1SLois Curfman McInnes } 1393a40ed3dSBarry Smith PetscFunctionReturn(0); 140b49de8d1SLois Curfman McInnes } 141b49de8d1SLois Curfman McInnes 14213f74950SBarry Smith PetscErrorCode MatGetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 143b49de8d1SLois Curfman McInnes { 144b49de8d1SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 145d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 146b49de8d1SLois Curfman McInnes 1473a40ed3dSBarry Smith PetscFunctionBegin; 148b49de8d1SLois Curfman McInnes for (i=0; i<m; i++) { 14954c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 15054c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 151b49de8d1SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 152b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 153b49de8d1SLois Curfman McInnes for (j=0; j<n; j++) { 15454c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 15554c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 1569566063dSJacob Faibussowitsch PetscCall(MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j)); 157b49de8d1SLois Curfman McInnes } 158e7e72b3dSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 1598965ea79SLois Curfman McInnes } 1603a40ed3dSBarry Smith PetscFunctionReturn(0); 1618965ea79SLois Curfman McInnes } 1628965ea79SLois Curfman McInnes 16349a6ff4bSBarry Smith static PetscErrorCode MatDenseGetLDA_MPIDense(Mat A,PetscInt *lda) 16449a6ff4bSBarry Smith { 16549a6ff4bSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 16649a6ff4bSBarry Smith 16749a6ff4bSBarry Smith PetscFunctionBegin; 1689566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,lda)); 16949a6ff4bSBarry Smith PetscFunctionReturn(0); 17049a6ff4bSBarry Smith } 17149a6ff4bSBarry Smith 172ad16ce7aSStefano Zampini static PetscErrorCode MatDenseSetLDA_MPIDense(Mat A,PetscInt lda) 173ad16ce7aSStefano Zampini { 174ad16ce7aSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17517359960SJose E. Roman PetscBool iscuda; 176ad16ce7aSStefano Zampini 177ad16ce7aSStefano Zampini PetscFunctionBegin; 17817359960SJose E. Roman if (!a->A) { 17928b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1809566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->rmap)); 1819566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->cmap)); 1829566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF,&a->A)); 1839566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)a->A)); 1849566063dSJacob Faibussowitsch PetscCall(MatSetSizes(a->A,A->rmap->n,A->cmap->N,A->rmap->n,A->cmap->N)); 1859566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A,MATMPIDENSECUDA,&iscuda)); 1869566063dSJacob Faibussowitsch PetscCall(MatSetType(a->A,iscuda ? MATSEQDENSECUDA : MATSEQDENSE)); 18717359960SJose E. Roman } 1889566063dSJacob Faibussowitsch PetscCall(MatDenseSetLDA(a->A,lda)); 189ad16ce7aSStefano Zampini PetscFunctionReturn(0); 190ad16ce7aSStefano Zampini } 191ad16ce7aSStefano Zampini 192637a0070SStefano Zampini static PetscErrorCode MatDenseGetArray_MPIDense(Mat A,PetscScalar **array) 193ff14e315SSatish Balay { 194ff14e315SSatish Balay Mat_MPIDense *a = (Mat_MPIDense*)A->data; 195ff14e315SSatish Balay 1963a40ed3dSBarry Smith PetscFunctionBegin; 19728b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1989566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(a->A,array)); 1993a40ed3dSBarry Smith PetscFunctionReturn(0); 200ff14e315SSatish Balay } 201ff14e315SSatish Balay 202637a0070SStefano Zampini static PetscErrorCode MatDenseGetArrayRead_MPIDense(Mat A,const PetscScalar **array) 2038572280aSBarry Smith { 2048572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 2058572280aSBarry Smith 2068572280aSBarry Smith PetscFunctionBegin; 20728b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2089566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A,array)); 2098572280aSBarry Smith PetscFunctionReturn(0); 2108572280aSBarry Smith } 2118572280aSBarry Smith 2126947451fSStefano Zampini static PetscErrorCode MatDenseGetArrayWrite_MPIDense(Mat A,PetscScalar **array) 2136947451fSStefano Zampini { 2146947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 2156947451fSStefano Zampini 2166947451fSStefano Zampini PetscFunctionBegin; 21728b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2189566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(a->A,array)); 2196947451fSStefano Zampini PetscFunctionReturn(0); 2206947451fSStefano Zampini } 2216947451fSStefano Zampini 222637a0070SStefano Zampini static PetscErrorCode MatDensePlaceArray_MPIDense(Mat A,const PetscScalar *array) 223d3042a70SBarry Smith { 224d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 225d3042a70SBarry Smith 226d3042a70SBarry Smith PetscFunctionBegin; 22728b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 22828b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2299566063dSJacob Faibussowitsch PetscCall(MatDensePlaceArray(a->A,array)); 230d3042a70SBarry Smith PetscFunctionReturn(0); 231d3042a70SBarry Smith } 232d3042a70SBarry Smith 233d3042a70SBarry Smith static PetscErrorCode MatDenseResetArray_MPIDense(Mat A) 234d3042a70SBarry Smith { 235d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 236d3042a70SBarry Smith 237d3042a70SBarry Smith PetscFunctionBegin; 23828b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 23928b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2409566063dSJacob Faibussowitsch PetscCall(MatDenseResetArray(a->A)); 241d3042a70SBarry Smith PetscFunctionReturn(0); 242d3042a70SBarry Smith } 243d3042a70SBarry Smith 244d5ea218eSStefano Zampini static PetscErrorCode MatDenseReplaceArray_MPIDense(Mat A,const PetscScalar *array) 245d5ea218eSStefano Zampini { 246d5ea218eSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 247d5ea218eSStefano Zampini 248d5ea218eSStefano Zampini PetscFunctionBegin; 24928b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 25028b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2519566063dSJacob Faibussowitsch PetscCall(MatDenseReplaceArray(a->A,array)); 252d5ea218eSStefano Zampini PetscFunctionReturn(0); 253d5ea218eSStefano Zampini } 254d5ea218eSStefano Zampini 2557dae84e0SHong Zhang static PetscErrorCode MatCreateSubMatrix_MPIDense(Mat A,IS isrow,IS iscol,MatReuse scall,Mat *B) 256ca3fa75bSLois Curfman McInnes { 257ca3fa75bSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data,*newmatd; 258637a0070SStefano Zampini PetscInt lda,i,j,rstart,rend,nrows,ncols,Ncols,nlrows,nlcols; 2595d0c19d7SBarry Smith const PetscInt *irow,*icol; 260637a0070SStefano Zampini const PetscScalar *v; 261637a0070SStefano Zampini PetscScalar *bv; 262ca3fa75bSLois Curfman McInnes Mat newmat; 2634aa3045dSJed Brown IS iscol_local; 26442a884f0SBarry Smith MPI_Comm comm_is,comm_mat; 265ca3fa75bSLois Curfman McInnes 266ca3fa75bSLois Curfman McInnes PetscFunctionBegin; 2679566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A,&comm_mat)); 2689566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)iscol,&comm_is)); 26908401ef6SPierre Jolivet PetscCheck(comm_mat == comm_is,PETSC_COMM_SELF,PETSC_ERR_ARG_NOTSAMECOMM,"IS communicator must match matrix communicator"); 27042a884f0SBarry Smith 2719566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol,&iscol_local)); 2729566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isrow,&irow)); 2739566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_local,&icol)); 2749566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow,&nrows)); 2759566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol,&ncols)); 2769566063dSJacob Faibussowitsch PetscCall(ISGetSize(iscol,&Ncols)); /* global number of columns, size of iscol_local */ 277ca3fa75bSLois Curfman McInnes 278ca3fa75bSLois Curfman McInnes /* No parallel redistribution currently supported! Should really check each index set 2797eba5e9cSLois Curfman McInnes to comfirm that it is OK. ... Currently supports only submatrix same partitioning as 2807eba5e9cSLois Curfman McInnes original matrix! */ 281ca3fa75bSLois Curfman McInnes 2829566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A,&nlrows,&nlcols)); 2839566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A,&rstart,&rend)); 284ca3fa75bSLois Curfman McInnes 285ca3fa75bSLois Curfman McInnes /* Check submatrix call */ 286ca3fa75bSLois Curfman McInnes if (scall == MAT_REUSE_MATRIX) { 287e32f2f54SBarry Smith /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */ 2887eba5e9cSLois Curfman McInnes /* Really need to test rows and column sizes! */ 289ca3fa75bSLois Curfman McInnes newmat = *B; 290ca3fa75bSLois Curfman McInnes } else { 291ca3fa75bSLois Curfman McInnes /* Create and fill new matrix */ 2929566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&newmat)); 2939566063dSJacob Faibussowitsch PetscCall(MatSetSizes(newmat,nrows,ncols,PETSC_DECIDE,Ncols)); 2949566063dSJacob Faibussowitsch PetscCall(MatSetType(newmat,((PetscObject)A)->type_name)); 2959566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(newmat,NULL)); 296ca3fa75bSLois Curfman McInnes } 297ca3fa75bSLois Curfman McInnes 298ca3fa75bSLois Curfman McInnes /* Now extract the data pointers and do the copy, column at a time */ 299ca3fa75bSLois Curfman McInnes newmatd = (Mat_MPIDense*)newmat->data; 3009566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(newmatd->A,&bv)); 3019566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(mat->A,&v)); 3029566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(mat->A,&lda)); 3034aa3045dSJed Brown for (i=0; i<Ncols; i++) { 304637a0070SStefano Zampini const PetscScalar *av = v + lda*icol[i]; 305ca3fa75bSLois Curfman McInnes for (j=0; j<nrows; j++) { 3067eba5e9cSLois Curfman McInnes *bv++ = av[irow[j] - rstart]; 307ca3fa75bSLois Curfman McInnes } 308ca3fa75bSLois Curfman McInnes } 3099566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(mat->A,&v)); 3109566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(newmatd->A,&bv)); 311ca3fa75bSLois Curfman McInnes 312ca3fa75bSLois Curfman McInnes /* Assemble the matrices so that the correct flags are set */ 3139566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY)); 3149566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY)); 315ca3fa75bSLois Curfman McInnes 316ca3fa75bSLois Curfman McInnes /* Free work space */ 3179566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isrow,&irow)); 3189566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_local,&icol)); 3199566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 320ca3fa75bSLois Curfman McInnes *B = newmat; 321ca3fa75bSLois Curfman McInnes PetscFunctionReturn(0); 322ca3fa75bSLois Curfman McInnes } 323ca3fa75bSLois Curfman McInnes 324637a0070SStefano Zampini PetscErrorCode MatDenseRestoreArray_MPIDense(Mat A,PetscScalar **array) 325ff14e315SSatish Balay { 32673a71a0fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 32773a71a0fSBarry Smith 3283a40ed3dSBarry Smith PetscFunctionBegin; 3299566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(a->A,array)); 3303a40ed3dSBarry Smith PetscFunctionReturn(0); 331ff14e315SSatish Balay } 332ff14e315SSatish Balay 333637a0070SStefano Zampini PetscErrorCode MatDenseRestoreArrayRead_MPIDense(Mat A,const PetscScalar **array) 3348572280aSBarry Smith { 3358572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 3368572280aSBarry Smith 3378572280aSBarry Smith PetscFunctionBegin; 3389566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A,array)); 3398572280aSBarry Smith PetscFunctionReturn(0); 3408572280aSBarry Smith } 3418572280aSBarry Smith 3426947451fSStefano Zampini PetscErrorCode MatDenseRestoreArrayWrite_MPIDense(Mat A,PetscScalar **array) 3436947451fSStefano Zampini { 3446947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 3456947451fSStefano Zampini 3466947451fSStefano Zampini PetscFunctionBegin; 3479566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(a->A,array)); 3486947451fSStefano Zampini PetscFunctionReturn(0); 3496947451fSStefano Zampini } 3506947451fSStefano Zampini 351dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode) 3528965ea79SLois Curfman McInnes { 35339ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 35413f74950SBarry Smith PetscInt nstash,reallocs; 3558965ea79SLois Curfman McInnes 3563a40ed3dSBarry Smith PetscFunctionBegin; 3574067683fSStefano Zampini if (mdn->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 3588965ea79SLois Curfman McInnes 3599566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range)); 3609566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs)); 3619566063dSJacob Faibussowitsch PetscCall(PetscInfo(mdn->A,"Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n",nstash,reallocs)); 3623a40ed3dSBarry Smith PetscFunctionReturn(0); 3638965ea79SLois Curfman McInnes } 3648965ea79SLois Curfman McInnes 365dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode) 3668965ea79SLois Curfman McInnes { 36739ddd567SLois Curfman McInnes Mat_MPIDense *mdn=(Mat_MPIDense*)mat->data; 36813f74950SBarry Smith PetscInt i,*row,*col,flg,j,rstart,ncols; 36913f74950SBarry Smith PetscMPIInt n; 37087828ca2SBarry Smith PetscScalar *val; 3718965ea79SLois Curfman McInnes 3723a40ed3dSBarry Smith PetscFunctionBegin; 373910cf402Sprj- if (!mdn->donotstash && !mat->nooffprocentries) { 3748965ea79SLois Curfman McInnes /* wait on receives */ 3757ef1d9bdSSatish Balay while (1) { 3769566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg)); 3777ef1d9bdSSatish Balay if (!flg) break; 3788965ea79SLois Curfman McInnes 3797ef1d9bdSSatish Balay for (i=0; i<n;) { 3807ef1d9bdSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 3812205254eSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 3822205254eSKarl Rupp if (row[j] != rstart) break; 3832205254eSKarl Rupp } 3847ef1d9bdSSatish Balay if (j < n) ncols = j-i; 3857ef1d9bdSSatish Balay else ncols = n-i; 3867ef1d9bdSSatish Balay /* Now assemble all these values with a single function call */ 3879566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,mat->insertmode)); 3887ef1d9bdSSatish Balay i = j; 3898965ea79SLois Curfman McInnes } 3907ef1d9bdSSatish Balay } 3919566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 392910cf402Sprj- } 3938965ea79SLois Curfman McInnes 3949566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mdn->A,mode)); 3959566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mdn->A,mode)); 3963a40ed3dSBarry Smith PetscFunctionReturn(0); 3978965ea79SLois Curfman McInnes } 3988965ea79SLois Curfman McInnes 399dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIDense(Mat A) 4008965ea79SLois Curfman McInnes { 40139ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 4023a40ed3dSBarry Smith 4033a40ed3dSBarry Smith PetscFunctionBegin; 4049566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 4053a40ed3dSBarry Smith PetscFunctionReturn(0); 4068965ea79SLois Curfman McInnes } 4078965ea79SLois Curfman McInnes 408637a0070SStefano Zampini PetscErrorCode MatZeroRows_MPIDense(Mat A,PetscInt n,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 4098965ea79SLois Curfman McInnes { 41039ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 411637a0070SStefano Zampini PetscInt i,len,*lrows; 412637a0070SStefano Zampini 413637a0070SStefano Zampini PetscFunctionBegin; 414637a0070SStefano Zampini /* get locally owned rows */ 4159566063dSJacob Faibussowitsch PetscCall(PetscLayoutMapLocal(A->rmap,n,rows,&len,&lrows,NULL)); 416637a0070SStefano Zampini /* fix right hand side if needed */ 417637a0070SStefano Zampini if (x && b) { 41897b48c8fSBarry Smith const PetscScalar *xx; 41997b48c8fSBarry Smith PetscScalar *bb; 4208965ea79SLois Curfman McInnes 4219566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 4229566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(b, &bb)); 423637a0070SStefano Zampini for (i=0;i<len;++i) bb[lrows[i]] = diag*xx[lrows[i]]; 4249566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 4259566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(b, &bb)); 42697b48c8fSBarry Smith } 4279566063dSJacob Faibussowitsch PetscCall(MatZeroRows(l->A,len,lrows,0.0,NULL,NULL)); 428e2eb51b1SBarry Smith if (diag != 0.0) { 429637a0070SStefano Zampini Vec d; 430b9679d65SBarry Smith 4319566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(A,NULL,&d)); 4329566063dSJacob Faibussowitsch PetscCall(VecSet(d,diag)); 4339566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet(A,d,INSERT_VALUES)); 4349566063dSJacob Faibussowitsch PetscCall(VecDestroy(&d)); 435b9679d65SBarry Smith } 4369566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 4373a40ed3dSBarry Smith PetscFunctionReturn(0); 4388965ea79SLois Curfman McInnes } 4398965ea79SLois Curfman McInnes 440cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMult_SeqDense(Mat,Vec,Vec); 441cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultAdd_SeqDense(Mat,Vec,Vec,Vec); 442cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTranspose_SeqDense(Mat,Vec,Vec); 443cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTransposeAdd_SeqDense(Mat,Vec,Vec,Vec); 444cc2e6a90SBarry Smith 445dfbe8321SBarry Smith PetscErrorCode MatMult_MPIDense(Mat mat,Vec xx,Vec yy) 4468965ea79SLois Curfman McInnes { 44739ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 448637a0070SStefano Zampini const PetscScalar *ax; 449637a0070SStefano Zampini PetscScalar *ay; 450d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 451c456f294SBarry Smith 4523a40ed3dSBarry Smith PetscFunctionBegin; 453*6f08ad05SPierre Jolivet if (!mdn->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(mat)); 4549566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(xx,&ax,&axmtype)); 4559566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(mdn->lvec,&ay,&aymtype)); 4569566063dSJacob Faibussowitsch PetscCall(PetscSFBcastWithMemTypeBegin(mdn->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPI_REPLACE)); 4579566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ax,ay,MPI_REPLACE)); 4589566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(mdn->lvec,&ay)); 4599566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(xx,&ax)); 4609566063dSJacob Faibussowitsch PetscCall((*mdn->A->ops->mult)(mdn->A,mdn->lvec,yy)); 4613a40ed3dSBarry Smith PetscFunctionReturn(0); 4628965ea79SLois Curfman McInnes } 4638965ea79SLois Curfman McInnes 464dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz) 4658965ea79SLois Curfman McInnes { 46639ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 467637a0070SStefano Zampini const PetscScalar *ax; 468637a0070SStefano Zampini PetscScalar *ay; 469d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 470c456f294SBarry Smith 4713a40ed3dSBarry Smith PetscFunctionBegin; 472*6f08ad05SPierre Jolivet if (!mdn->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(mat)); 4739566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(xx,&ax,&axmtype)); 4749566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(mdn->lvec,&ay,&aymtype)); 4759566063dSJacob Faibussowitsch PetscCall(PetscSFBcastWithMemTypeBegin(mdn->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPI_REPLACE)); 4769566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ax,ay,MPI_REPLACE)); 4779566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(mdn->lvec,&ay)); 4789566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(xx,&ax)); 4799566063dSJacob Faibussowitsch PetscCall((*mdn->A->ops->multadd)(mdn->A,mdn->lvec,yy,zz)); 4803a40ed3dSBarry Smith PetscFunctionReturn(0); 4818965ea79SLois Curfman McInnes } 4828965ea79SLois Curfman McInnes 483dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIDense(Mat A,Vec xx,Vec yy) 484096963f5SLois Curfman McInnes { 485096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 486637a0070SStefano Zampini const PetscScalar *ax; 487637a0070SStefano Zampini PetscScalar *ay; 488d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 489096963f5SLois Curfman McInnes 4903a40ed3dSBarry Smith PetscFunctionBegin; 491*6f08ad05SPierre Jolivet if (!a->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); 4929566063dSJacob Faibussowitsch PetscCall(VecSet(yy,0.0)); 4939566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A,xx,a->lvec)); 4949566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(a->lvec,&ax,&axmtype)); 4959566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(yy,&ay,&aymtype)); 4969566063dSJacob Faibussowitsch PetscCall(PetscSFReduceWithMemTypeBegin(a->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPIU_SUM)); 4979566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM)); 4989566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(a->lvec,&ax)); 4999566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(yy,&ay)); 5003a40ed3dSBarry Smith PetscFunctionReturn(0); 501096963f5SLois Curfman McInnes } 502096963f5SLois Curfman McInnes 503dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz) 504096963f5SLois Curfman McInnes { 505096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 506637a0070SStefano Zampini const PetscScalar *ax; 507637a0070SStefano Zampini PetscScalar *ay; 508d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 509096963f5SLois Curfman McInnes 5103a40ed3dSBarry Smith PetscFunctionBegin; 511*6f08ad05SPierre Jolivet if (!a->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); 5129566063dSJacob Faibussowitsch PetscCall(VecCopy(yy,zz)); 5139566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A,xx,a->lvec)); 5149566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(a->lvec,&ax,&axmtype)); 5159566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(zz,&ay,&aymtype)); 5169566063dSJacob Faibussowitsch PetscCall(PetscSFReduceWithMemTypeBegin(a->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPIU_SUM)); 5179566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM)); 5189566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(a->lvec,&ax)); 5199566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(zz,&ay)); 5203a40ed3dSBarry Smith PetscFunctionReturn(0); 521096963f5SLois Curfman McInnes } 522096963f5SLois Curfman McInnes 523dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIDense(Mat A,Vec v) 5248965ea79SLois Curfman McInnes { 52539ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 526637a0070SStefano Zampini PetscInt lda,len,i,n,m = A->rmap->n,radd; 52787828ca2SBarry Smith PetscScalar *x,zero = 0.0; 528637a0070SStefano Zampini const PetscScalar *av; 529ed3cc1f0SBarry Smith 5303a40ed3dSBarry Smith PetscFunctionBegin; 5319566063dSJacob Faibussowitsch PetscCall(VecSet(v,zero)); 5329566063dSJacob Faibussowitsch PetscCall(VecGetArray(v,&x)); 5339566063dSJacob Faibussowitsch PetscCall(VecGetSize(v,&n)); 53408401ef6SPierre Jolivet PetscCheck(n == A->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec"); 535d0f46423SBarry Smith len = PetscMin(a->A->rmap->n,a->A->cmap->n); 536d0f46423SBarry Smith radd = A->rmap->rstart*m; 5379566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A,&av)); 5389566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 53944cd7ae7SLois Curfman McInnes for (i=0; i<len; i++) { 540637a0070SStefano Zampini x[i] = av[radd + i*lda + i]; 541096963f5SLois Curfman McInnes } 5429566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A,&av)); 5439566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v,&x)); 5443a40ed3dSBarry Smith PetscFunctionReturn(0); 5458965ea79SLois Curfman McInnes } 5468965ea79SLois Curfman McInnes 547dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIDense(Mat mat) 5488965ea79SLois Curfman McInnes { 5493501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 550ed3cc1f0SBarry Smith 5513a40ed3dSBarry Smith PetscFunctionBegin; 552aa482453SBarry Smith #if defined(PETSC_USE_LOG) 553c0aa6a63SJacob Faibussowitsch PetscLogObjectState((PetscObject)mat,"Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT,mat->rmap->N,mat->cmap->N); 5548965ea79SLois Curfman McInnes #endif 5559566063dSJacob Faibussowitsch PetscCall(MatStashDestroy_Private(&mat->stash)); 55628b400f6SJacob Faibussowitsch PetscCheck(!mdn->vecinuse,PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 55728b400f6SJacob Faibussowitsch PetscCheck(!mdn->matinuse,PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 5589566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mdn->A)); 5599566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mdn->lvec)); 5609566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&mdn->Mvctx)); 5619566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mdn->cvec)); 5629566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mdn->cmat)); 56301b82886SBarry Smith 5649566063dSJacob Faibussowitsch PetscCall(PetscFree(mat->data)); 5659566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)mat,NULL)); 5668baccfbdSHong Zhang 5679566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",NULL)); 5689566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseSetLDA_C",NULL)); 5699566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",NULL)); 5709566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",NULL)); 5719566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",NULL)); 5729566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",NULL)); 5739566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayWrite_C",NULL)); 5749566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayWrite_C",NULL)); 5759566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",NULL)); 5769566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",NULL)); 5779566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseReplaceArray_C",NULL)); 5789566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpiaij_mpidense_C",NULL)); 5799566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_mpiaij_C",NULL)); 5808baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 5819566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",NULL)); 5828baccfbdSHong Zhang #endif 583d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 5849566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_scalapack_C",NULL)); 585d24d4204SJose E. Roman #endif 5869566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",NULL)); 5879566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaij_mpidense_C",NULL)); 5889566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaij_C",NULL)); 5896718818eSStefano Zampini #if defined (PETSC_HAVE_CUDA) 5909566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaijcusparse_mpidense_C",NULL)); 5919566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaijcusparse_C",NULL)); 5926718818eSStefano Zampini #endif 5939566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",NULL)); 5949566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",NULL)); 5959566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",NULL)); 5969566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",NULL)); 5979566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",NULL)); 5989566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",NULL)); 5999566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",NULL)); 6009566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",NULL)); 6019566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetSubMatrix_C",NULL)); 6029566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreSubMatrix_C",NULL)); 6033a40ed3dSBarry Smith PetscFunctionReturn(0); 6048965ea79SLois Curfman McInnes } 60539ddd567SLois Curfman McInnes 60652c5f739Sprj- PETSC_INTERN PetscErrorCode MatView_SeqDense(Mat,PetscViewer); 60752c5f739Sprj- 6089804daf3SBarry Smith #include <petscdraw.h> 6096849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 6108965ea79SLois Curfman McInnes { 61139ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 612616b8fbbSStefano Zampini PetscMPIInt rank; 61319fd82e9SBarry Smith PetscViewerType vtype; 614ace3abfcSBarry Smith PetscBool iascii,isdraw; 615b0a32e0cSBarry Smith PetscViewer sviewer; 616f3ef73ceSBarry Smith PetscViewerFormat format; 6178965ea79SLois Curfman McInnes 6183a40ed3dSBarry Smith PetscFunctionBegin; 6199566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank)); 6209566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii)); 6219566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw)); 62232077d6dSBarry Smith if (iascii) { 6239566063dSJacob Faibussowitsch PetscCall(PetscViewerGetType(viewer,&vtype)); 6249566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer,&format)); 625456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 6264e220ebcSLois Curfman McInnes MatInfo info; 6279566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat,MAT_LOCAL,&info)); 6289566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 6299566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer," [%d] local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %" PetscInt_FMT " \n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory)); 6309566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 6319566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 632*6f08ad05SPierre Jolivet if (mdn->Mvctx) PetscCall(PetscSFView(mdn->Mvctx,viewer)); 6333a40ed3dSBarry Smith PetscFunctionReturn(0); 634fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 6353a40ed3dSBarry Smith PetscFunctionReturn(0); 6368965ea79SLois Curfman McInnes } 637f1af5d2fSBarry Smith } else if (isdraw) { 638b0a32e0cSBarry Smith PetscDraw draw; 639ace3abfcSBarry Smith PetscBool isnull; 640f1af5d2fSBarry Smith 6419566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer,0,&draw)); 6429566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw,&isnull)); 643f1af5d2fSBarry Smith if (isnull) PetscFunctionReturn(0); 644f1af5d2fSBarry Smith } 64577ed5343SBarry Smith 6467da1fb6eSBarry Smith { 6478965ea79SLois Curfman McInnes /* assemble the entire matrix onto first processor. */ 6488965ea79SLois Curfman McInnes Mat A; 649d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,m,row,i,nz; 650ba8c8a56SBarry Smith PetscInt *cols; 651ba8c8a56SBarry Smith PetscScalar *vals; 6528965ea79SLois Curfman McInnes 6539566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat),&A)); 654dd400576SPatrick Sanan if (rank == 0) { 6559566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A,M,N,M,N)); 6563a40ed3dSBarry Smith } else { 6579566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A,0,0,M,N)); 6588965ea79SLois Curfman McInnes } 6597adad957SLisandro Dalcin /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */ 6609566063dSJacob Faibussowitsch PetscCall(MatSetType(A,MATMPIDENSE)); 6619566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(A,NULL)); 6629566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)A)); 6638965ea79SLois Curfman McInnes 66439ddd567SLois Curfman McInnes /* Copy the matrix ... This isn't the most efficient means, 66539ddd567SLois Curfman McInnes but it's quick for now */ 66651022da4SBarry Smith A->insertmode = INSERT_VALUES; 6672205254eSKarl Rupp 6682205254eSKarl Rupp row = mat->rmap->rstart; 6692205254eSKarl Rupp m = mdn->A->rmap->n; 6708965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 6719566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIDense(mat,row,&nz,&cols,&vals)); 6729566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIDense(A,1,&row,nz,cols,vals,INSERT_VALUES)); 6739566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIDense(mat,row,&nz,&cols,&vals)); 67439ddd567SLois Curfman McInnes row++; 6758965ea79SLois Curfman McInnes } 6768965ea79SLois Curfman McInnes 6779566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY)); 6789566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY)); 6799566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer)); 680dd400576SPatrick Sanan if (rank == 0) { 6819566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)((Mat_MPIDense*)(A->data))->A,((PetscObject)mat)->name)); 6829566063dSJacob Faibussowitsch PetscCall(MatView_SeqDense(((Mat_MPIDense*)(A->data))->A,sviewer)); 6838965ea79SLois Curfman McInnes } 6849566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer)); 6859566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 6869566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 6878965ea79SLois Curfman McInnes } 6883a40ed3dSBarry Smith PetscFunctionReturn(0); 6898965ea79SLois Curfman McInnes } 6908965ea79SLois Curfman McInnes 691dfbe8321SBarry Smith PetscErrorCode MatView_MPIDense(Mat mat,PetscViewer viewer) 6928965ea79SLois Curfman McInnes { 693ace3abfcSBarry Smith PetscBool iascii,isbinary,isdraw,issocket; 6948965ea79SLois Curfman McInnes 695433994e6SBarry Smith PetscFunctionBegin; 6969566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii)); 6979566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary)); 6989566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket)); 6999566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw)); 7000f5bd95cSBarry Smith 70132077d6dSBarry Smith if (iascii || issocket || isdraw) { 7029566063dSJacob Faibussowitsch PetscCall(MatView_MPIDense_ASCIIorDraworSocket(mat,viewer)); 7030f5bd95cSBarry Smith } else if (isbinary) { 7049566063dSJacob Faibussowitsch PetscCall(MatView_Dense_Binary(mat,viewer)); 70511aeaf0aSBarry Smith } 7063a40ed3dSBarry Smith PetscFunctionReturn(0); 7078965ea79SLois Curfman McInnes } 7088965ea79SLois Curfman McInnes 709dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info) 7108965ea79SLois Curfman McInnes { 7113501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 7123501a2bdSLois Curfman McInnes Mat mdn = mat->A; 7133966268fSBarry Smith PetscLogDouble isend[5],irecv[5]; 7148965ea79SLois Curfman McInnes 7153a40ed3dSBarry Smith PetscFunctionBegin; 7164e220ebcSLois Curfman McInnes info->block_size = 1.0; 7172205254eSKarl Rupp 7189566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mdn,MAT_LOCAL,info)); 7192205254eSKarl Rupp 7204e220ebcSLois Curfman McInnes isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 7214e220ebcSLois Curfman McInnes isend[3] = info->memory; isend[4] = info->mallocs; 7228965ea79SLois Curfman McInnes if (flag == MAT_LOCAL) { 7234e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 7244e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 7254e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 7264e220ebcSLois Curfman McInnes info->memory = isend[3]; 7274e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 7288965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 7291c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_MAX,PetscObjectComm((PetscObject)A))); 7302205254eSKarl Rupp 7314e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7324e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7334e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7344e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7354e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7368965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 7371c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_SUM,PetscObjectComm((PetscObject)A))); 7382205254eSKarl Rupp 7394e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7404e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7414e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7424e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7434e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7448965ea79SLois Curfman McInnes } 7454e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 7464e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 7474e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 7483a40ed3dSBarry Smith PetscFunctionReturn(0); 7498965ea79SLois Curfman McInnes } 7508965ea79SLois Curfman McInnes 751ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIDense(Mat A,MatOption op,PetscBool flg) 7528965ea79SLois Curfman McInnes { 75339ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 7548965ea79SLois Curfman McInnes 7553a40ed3dSBarry Smith PetscFunctionBegin; 75612c028f9SKris Buschelman switch (op) { 757512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 75812c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 75912c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 76043674050SBarry Smith MatCheckPreallocated(A,1); 7619566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A,op,flg)); 76212c028f9SKris Buschelman break; 76312c028f9SKris Buschelman case MAT_ROW_ORIENTED: 76443674050SBarry Smith MatCheckPreallocated(A,1); 7654e0d8c25SBarry Smith a->roworiented = flg; 7669566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A,op,flg)); 76712c028f9SKris Buschelman break; 7688c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 76913fa8e87SLisandro Dalcin case MAT_KEEP_NONZERO_PATTERN: 77012c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 771071fcb05SBarry Smith case MAT_SORTED_FULL: 7729566063dSJacob Faibussowitsch PetscCall(PetscInfo(A,"Option %s ignored\n",MatOptions[op])); 77312c028f9SKris Buschelman break; 77412c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 7754e0d8c25SBarry Smith a->donotstash = flg; 77612c028f9SKris Buschelman break; 77777e54ba9SKris Buschelman case MAT_SYMMETRIC: 77877e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 7799a4540c5SBarry Smith case MAT_HERMITIAN: 7809a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 781600fe468SBarry Smith case MAT_IGNORE_LOWER_TRIANGULAR: 7825d7aebe8SStefano Zampini case MAT_IGNORE_ZERO_ENTRIES: 7839566063dSJacob Faibussowitsch PetscCall(PetscInfo(A,"Option %s ignored\n",MatOptions[op])); 78477e54ba9SKris Buschelman break; 78512c028f9SKris Buschelman default: 78698921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %s",MatOptions[op]); 7873a40ed3dSBarry Smith } 7883a40ed3dSBarry Smith PetscFunctionReturn(0); 7898965ea79SLois Curfman McInnes } 7908965ea79SLois Curfman McInnes 791dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIDense(Mat A,Vec ll,Vec rr) 7925b2fa520SLois Curfman McInnes { 7935b2fa520SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 794637a0070SStefano Zampini const PetscScalar *l; 795637a0070SStefano Zampini PetscScalar x,*v,*vv,*r; 796637a0070SStefano Zampini PetscInt i,j,s2a,s3a,s2,s3,m=mdn->A->rmap->n,n=mdn->A->cmap->n,lda; 7975b2fa520SLois Curfman McInnes 7985b2fa520SLois Curfman McInnes PetscFunctionBegin; 7999566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(mdn->A,&vv)); 8009566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(mdn->A,&lda)); 8019566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A,&s2,&s3)); 8025b2fa520SLois Curfman McInnes if (ll) { 8039566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll,&s2a)); 80408401ef6SPierre Jolivet PetscCheck(s2a == s2,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vector non-conforming local size, %" PetscInt_FMT " != %" PetscInt_FMT, s2a, s2); 8059566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(ll,&l)); 8065b2fa520SLois Curfman McInnes for (i=0; i<m; i++) { 8075b2fa520SLois Curfman McInnes x = l[i]; 808637a0070SStefano Zampini v = vv + i; 809637a0070SStefano Zampini for (j=0; j<n; j++) { (*v) *= x; v+= lda;} 8105b2fa520SLois Curfman McInnes } 8119566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(ll,&l)); 8129566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(1.0*n*m)); 8135b2fa520SLois Curfman McInnes } 8145b2fa520SLois Curfman McInnes if (rr) { 815637a0070SStefano Zampini const PetscScalar *ar; 816637a0070SStefano Zampini 8179566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr,&s3a)); 81808401ef6SPierre Jolivet PetscCheck(s3a == s3,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vec non-conforming local size, %" PetscInt_FMT " != %" PetscInt_FMT ".", s3a, s3); 8199566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(rr,&ar)); 820*6f08ad05SPierre Jolivet if (!mdn->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); 8219566063dSJacob Faibussowitsch PetscCall(VecGetArray(mdn->lvec,&r)); 8229566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(mdn->Mvctx,MPIU_SCALAR,ar,r,MPI_REPLACE)); 8239566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ar,r,MPI_REPLACE)); 8249566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(rr,&ar)); 8255b2fa520SLois Curfman McInnes for (i=0; i<n; i++) { 8265b2fa520SLois Curfman McInnes x = r[i]; 827637a0070SStefano Zampini v = vv + i*lda; 8282205254eSKarl Rupp for (j=0; j<m; j++) (*v++) *= x; 8295b2fa520SLois Curfman McInnes } 8309566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mdn->lvec,&r)); 8319566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(1.0*n*m)); 8325b2fa520SLois Curfman McInnes } 8339566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(mdn->A,&vv)); 8345b2fa520SLois Curfman McInnes PetscFunctionReturn(0); 8355b2fa520SLois Curfman McInnes } 8365b2fa520SLois Curfman McInnes 837dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIDense(Mat A,NormType type,PetscReal *nrm) 838096963f5SLois Curfman McInnes { 8393501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 84013f74950SBarry Smith PetscInt i,j; 841616b8fbbSStefano Zampini PetscMPIInt size; 842329f5518SBarry Smith PetscReal sum = 0.0; 843637a0070SStefano Zampini const PetscScalar *av,*v; 8443501a2bdSLois Curfman McInnes 8453a40ed3dSBarry Smith PetscFunctionBegin; 8469566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(mdn->A,&av)); 847637a0070SStefano Zampini v = av; 8489566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A),&size)); 849616b8fbbSStefano Zampini if (size == 1) { 8509566063dSJacob Faibussowitsch PetscCall(MatNorm(mdn->A,type,nrm)); 8513501a2bdSLois Curfman McInnes } else { 8523501a2bdSLois Curfman McInnes if (type == NORM_FROBENIUS) { 853d0f46423SBarry Smith for (i=0; i<mdn->A->cmap->n*mdn->A->rmap->n; i++) { 854329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 8553501a2bdSLois Curfman McInnes } 8561c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A))); 8578f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 8589566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0*mdn->A->cmap->n*mdn->A->rmap->n)); 8593a40ed3dSBarry Smith } else if (type == NORM_1) { 860329f5518SBarry Smith PetscReal *tmp,*tmp2; 8619566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(A->cmap->N,&tmp,A->cmap->N,&tmp2)); 862064f8208SBarry Smith *nrm = 0.0; 863637a0070SStefano Zampini v = av; 864d0f46423SBarry Smith for (j=0; j<mdn->A->cmap->n; j++) { 865d0f46423SBarry Smith for (i=0; i<mdn->A->rmap->n; i++) { 86667e560aaSBarry Smith tmp[j] += PetscAbsScalar(*v); v++; 8673501a2bdSLois Curfman McInnes } 8683501a2bdSLois Curfman McInnes } 8691c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(tmp,tmp2,A->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A))); 870d0f46423SBarry Smith for (j=0; j<A->cmap->N; j++) { 871064f8208SBarry Smith if (tmp2[j] > *nrm) *nrm = tmp2[j]; 8723501a2bdSLois Curfman McInnes } 8739566063dSJacob Faibussowitsch PetscCall(PetscFree2(tmp,tmp2)); 8749566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(A->cmap->n*A->rmap->n)); 8753a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 876329f5518SBarry Smith PetscReal ntemp; 8779566063dSJacob Faibussowitsch PetscCall(MatNorm(mdn->A,type,&ntemp)); 8781c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&ntemp,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A))); 879ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"No support for two norm"); 8803501a2bdSLois Curfman McInnes } 8819566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(mdn->A,&av)); 8823a40ed3dSBarry Smith PetscFunctionReturn(0); 8833501a2bdSLois Curfman McInnes } 8843501a2bdSLois Curfman McInnes 885fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIDense(Mat A,MatReuse reuse,Mat *matout) 8863501a2bdSLois Curfman McInnes { 8873501a2bdSLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 8883501a2bdSLois Curfman McInnes Mat B; 889d0f46423SBarry Smith PetscInt M = A->rmap->N,N = A->cmap->N,m,n,*rwork,rstart = A->rmap->rstart; 890637a0070SStefano Zampini PetscInt j,i,lda; 89187828ca2SBarry Smith PetscScalar *v; 8923501a2bdSLois Curfman McInnes 8933a40ed3dSBarry Smith PetscFunctionBegin; 894cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 8959566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&B)); 8969566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B,A->cmap->n,A->rmap->n,N,M)); 8979566063dSJacob Faibussowitsch PetscCall(MatSetType(B,((PetscObject)A)->type_name)); 8989566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(B,NULL)); 899637a0070SStefano Zampini } else B = *matout; 9003501a2bdSLois Curfman McInnes 901637a0070SStefano Zampini m = a->A->rmap->n; n = a->A->cmap->n; 9029566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A,(const PetscScalar**)&v)); 9039566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 9049566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m,&rwork)); 9053501a2bdSLois Curfman McInnes for (i=0; i<m; i++) rwork[i] = rstart + i; 9061acff37aSSatish Balay for (j=0; j<n; j++) { 9079566063dSJacob Faibussowitsch PetscCall(MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES)); 908637a0070SStefano Zampini v += lda; 9093501a2bdSLois Curfman McInnes } 9109566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A,(const PetscScalar**)&v)); 9119566063dSJacob Faibussowitsch PetscCall(PetscFree(rwork)); 9129566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY)); 9139566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY)); 914cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) { 9153501a2bdSLois Curfman McInnes *matout = B; 9163501a2bdSLois Curfman McInnes } else { 9179566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(A,&B)); 9183501a2bdSLois Curfman McInnes } 9193a40ed3dSBarry Smith PetscFunctionReturn(0); 920096963f5SLois Curfman McInnes } 921096963f5SLois Curfman McInnes 9226849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat*); 92352c5f739Sprj- PETSC_INTERN PetscErrorCode MatScale_MPIDense(Mat,PetscScalar); 9248965ea79SLois Curfman McInnes 9254994cf47SJed Brown PetscErrorCode MatSetUp_MPIDense(Mat A) 926273d9f13SBarry Smith { 927273d9f13SBarry Smith PetscFunctionBegin; 9289566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->rmap)); 9299566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->cmap)); 93018992e5dSStefano Zampini if (!A->preallocated) { 9319566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(A,NULL)); 93218992e5dSStefano Zampini } 933273d9f13SBarry Smith PetscFunctionReturn(0); 934273d9f13SBarry Smith } 935273d9f13SBarry Smith 936488007eeSBarry Smith PetscErrorCode MatAXPY_MPIDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str) 937488007eeSBarry Smith { 938488007eeSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)Y->data, *B = (Mat_MPIDense*)X->data; 939488007eeSBarry Smith 940488007eeSBarry Smith PetscFunctionBegin; 9419566063dSJacob Faibussowitsch PetscCall(MatAXPY(A->A,alpha,B->A,str)); 942488007eeSBarry Smith PetscFunctionReturn(0); 943488007eeSBarry Smith } 944488007eeSBarry Smith 9457087cfbeSBarry Smith PetscErrorCode MatConjugate_MPIDense(Mat mat) 946ba337c44SJed Brown { 947ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)mat->data; 948ba337c44SJed Brown 949ba337c44SJed Brown PetscFunctionBegin; 9509566063dSJacob Faibussowitsch PetscCall(MatConjugate(a->A)); 951ba337c44SJed Brown PetscFunctionReturn(0); 952ba337c44SJed Brown } 953ba337c44SJed Brown 954ba337c44SJed Brown PetscErrorCode MatRealPart_MPIDense(Mat A) 955ba337c44SJed Brown { 956ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 957ba337c44SJed Brown 958ba337c44SJed Brown PetscFunctionBegin; 9599566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 960ba337c44SJed Brown PetscFunctionReturn(0); 961ba337c44SJed Brown } 962ba337c44SJed Brown 963ba337c44SJed Brown PetscErrorCode MatImaginaryPart_MPIDense(Mat A) 964ba337c44SJed Brown { 965ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 966ba337c44SJed Brown 967ba337c44SJed Brown PetscFunctionBegin; 9689566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 969ba337c44SJed Brown PetscFunctionReturn(0); 970ba337c44SJed Brown } 971ba337c44SJed Brown 97249a6ff4bSBarry Smith static PetscErrorCode MatGetColumnVector_MPIDense(Mat A,Vec v,PetscInt col) 97349a6ff4bSBarry Smith { 974637a0070SStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*) A->data; 97549a6ff4bSBarry Smith 97649a6ff4bSBarry Smith PetscFunctionBegin; 97728b400f6SJacob Faibussowitsch PetscCheck(a->A,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Missing local matrix"); 97828b400f6SJacob Faibussowitsch PetscCheck(a->A->ops->getcolumnvector,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Missing get column operation"); 9799566063dSJacob Faibussowitsch PetscCall((*a->A->ops->getcolumnvector)(a->A,v,col)); 98049a6ff4bSBarry Smith PetscFunctionReturn(0); 98149a6ff4bSBarry Smith } 98249a6ff4bSBarry Smith 983857cbf51SRichard Tran Mills PETSC_INTERN PetscErrorCode MatGetColumnReductions_SeqDense(Mat,PetscInt,PetscReal*); 98452c5f739Sprj- 985857cbf51SRichard Tran Mills PetscErrorCode MatGetColumnReductions_MPIDense(Mat A,PetscInt type,PetscReal *reductions) 9860716a85fSBarry Smith { 987a873a8cdSSam Reynolds PetscInt i,m,n; 9880716a85fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*) A->data; 9890716a85fSBarry Smith PetscReal *work; 9900716a85fSBarry Smith 9910716a85fSBarry Smith PetscFunctionBegin; 9929566063dSJacob Faibussowitsch PetscCall(MatGetSize(A,&m,&n)); 9939566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n,&work)); 994857cbf51SRichard Tran Mills if (type == REDUCTION_MEAN_REALPART) { 9959566063dSJacob Faibussowitsch PetscCall(MatGetColumnReductions_SeqDense(a->A,(PetscInt)REDUCTION_SUM_REALPART,work)); 996857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_IMAGINARYPART) { 9979566063dSJacob Faibussowitsch PetscCall(MatGetColumnReductions_SeqDense(a->A,(PetscInt)REDUCTION_SUM_IMAGINARYPART,work)); 998a873a8cdSSam Reynolds } else { 9999566063dSJacob Faibussowitsch PetscCall(MatGetColumnReductions_SeqDense(a->A,type,work)); 1000a873a8cdSSam Reynolds } 1001857cbf51SRichard Tran Mills if (type == NORM_2) { 10020716a85fSBarry Smith for (i=0; i<n; i++) work[i] *= work[i]; 10030716a85fSBarry Smith } 1004857cbf51SRichard Tran Mills if (type == NORM_INFINITY) { 10051c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work,reductions,n,MPIU_REAL,MPIU_MAX,A->hdr.comm)); 10060716a85fSBarry Smith } else { 10071c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work,reductions,n,MPIU_REAL,MPIU_SUM,A->hdr.comm)); 10080716a85fSBarry Smith } 10099566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 1010857cbf51SRichard Tran Mills if (type == NORM_2) { 1011a873a8cdSSam Reynolds for (i=0; i<n; i++) reductions[i] = PetscSqrtReal(reductions[i]); 1012857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 1013a873a8cdSSam Reynolds for (i=0; i<n; i++) reductions[i] /= m; 10140716a85fSBarry Smith } 10150716a85fSBarry Smith PetscFunctionReturn(0); 10160716a85fSBarry Smith } 10170716a85fSBarry Smith 1018637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 10196947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVec_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10206947451fSStefano Zampini { 10216947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10226947451fSStefano Zampini PetscInt lda; 10236947451fSStefano Zampini 10246947451fSStefano Zampini PetscFunctionBegin; 102528b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 102628b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 10276947451fSStefano Zampini if (!a->cvec) { 10289566063dSJacob Faibussowitsch PetscCall(VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 10299566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec)); 10306947451fSStefano Zampini } 10316947451fSStefano Zampini a->vecinuse = col + 1; 10329566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 10339566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArray(a->A,(PetscScalar**)&a->ptrinuse)); 10349566063dSJacob Faibussowitsch PetscCall(VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 10356947451fSStefano Zampini *v = a->cvec; 10366947451fSStefano Zampini PetscFunctionReturn(0); 10376947451fSStefano Zampini } 10386947451fSStefano Zampini 10396947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVec_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10406947451fSStefano Zampini { 10416947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10426947451fSStefano Zampini 10436947451fSStefano Zampini PetscFunctionBegin; 104428b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 104528b400f6SJacob Faibussowitsch PetscCheck(a->cvec,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector"); 10466947451fSStefano Zampini a->vecinuse = 0; 10479566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArray(a->A,(PetscScalar**)&a->ptrinuse)); 10489566063dSJacob Faibussowitsch PetscCall(VecCUDAResetArray(a->cvec)); 10496947451fSStefano Zampini *v = NULL; 10506947451fSStefano Zampini PetscFunctionReturn(0); 10516947451fSStefano Zampini } 10526947451fSStefano Zampini 10536947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecRead_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10546947451fSStefano Zampini { 10556947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10566947451fSStefano Zampini PetscInt lda; 10576947451fSStefano Zampini 10586947451fSStefano Zampini PetscFunctionBegin; 105928b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 106028b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 10616947451fSStefano Zampini if (!a->cvec) { 10629566063dSJacob Faibussowitsch PetscCall(VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 10639566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec)); 10646947451fSStefano Zampini } 10656947451fSStefano Zampini a->vecinuse = col + 1; 10669566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 10679566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArrayRead(a->A,&a->ptrinuse)); 10689566063dSJacob Faibussowitsch PetscCall(VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 10699566063dSJacob Faibussowitsch PetscCall(VecLockReadPush(a->cvec)); 10706947451fSStefano Zampini *v = a->cvec; 10716947451fSStefano Zampini PetscFunctionReturn(0); 10726947451fSStefano Zampini } 10736947451fSStefano Zampini 10746947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecRead_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10756947451fSStefano Zampini { 10766947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10776947451fSStefano Zampini 10786947451fSStefano Zampini PetscFunctionBegin; 107928b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 108028b400f6SJacob Faibussowitsch PetscCheck(a->cvec,PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 10816947451fSStefano Zampini a->vecinuse = 0; 10829566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArrayRead(a->A,&a->ptrinuse)); 10839566063dSJacob Faibussowitsch PetscCall(VecLockReadPop(a->cvec)); 10849566063dSJacob Faibussowitsch PetscCall(VecCUDAResetArray(a->cvec)); 10856947451fSStefano Zampini *v = NULL; 10866947451fSStefano Zampini PetscFunctionReturn(0); 10876947451fSStefano Zampini } 10886947451fSStefano Zampini 10896947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecWrite_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10906947451fSStefano Zampini { 10916947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10926947451fSStefano Zampini PetscInt lda; 10936947451fSStefano Zampini 10946947451fSStefano Zampini PetscFunctionBegin; 109528b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 109628b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 10976947451fSStefano Zampini if (!a->cvec) { 10989566063dSJacob Faibussowitsch PetscCall(VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 10999566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec)); 11006947451fSStefano Zampini } 11016947451fSStefano Zampini a->vecinuse = col + 1; 11029566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 11039566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArrayWrite(a->A,(PetscScalar**)&a->ptrinuse)); 11049566063dSJacob Faibussowitsch PetscCall(VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 11056947451fSStefano Zampini *v = a->cvec; 11066947451fSStefano Zampini PetscFunctionReturn(0); 11076947451fSStefano Zampini } 11086947451fSStefano Zampini 11096947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 11106947451fSStefano Zampini { 11116947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 11126947451fSStefano Zampini 11136947451fSStefano Zampini PetscFunctionBegin; 111428b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 111528b400f6SJacob Faibussowitsch PetscCheck(a->cvec,PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 11166947451fSStefano Zampini a->vecinuse = 0; 11179566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArrayWrite(a->A,(PetscScalar**)&a->ptrinuse)); 11189566063dSJacob Faibussowitsch PetscCall(VecCUDAResetArray(a->cvec)); 11196947451fSStefano Zampini *v = NULL; 11206947451fSStefano Zampini PetscFunctionReturn(0); 11216947451fSStefano Zampini } 11226947451fSStefano Zampini 1123637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAPlaceArray_MPIDenseCUDA(Mat A, const PetscScalar *a) 1124637a0070SStefano Zampini { 1125637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1126637a0070SStefano Zampini 1127637a0070SStefano Zampini PetscFunctionBegin; 112828b400f6SJacob Faibussowitsch PetscCheck(!l->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 112928b400f6SJacob Faibussowitsch PetscCheck(!l->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 11309566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAPlaceArray(l->A,a)); 1131637a0070SStefano Zampini PetscFunctionReturn(0); 1132637a0070SStefano Zampini } 1133637a0070SStefano Zampini 1134637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAResetArray_MPIDenseCUDA(Mat A) 1135637a0070SStefano Zampini { 1136637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1137637a0070SStefano Zampini 1138637a0070SStefano Zampini PetscFunctionBegin; 113928b400f6SJacob Faibussowitsch PetscCheck(!l->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 114028b400f6SJacob Faibussowitsch PetscCheck(!l->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 11419566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAResetArray(l->A)); 1142637a0070SStefano Zampini PetscFunctionReturn(0); 1143637a0070SStefano Zampini } 1144637a0070SStefano Zampini 1145d5ea218eSStefano Zampini static PetscErrorCode MatDenseCUDAReplaceArray_MPIDenseCUDA(Mat A, const PetscScalar *a) 1146d5ea218eSStefano Zampini { 1147d5ea218eSStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1148d5ea218eSStefano Zampini 1149d5ea218eSStefano Zampini PetscFunctionBegin; 115028b400f6SJacob Faibussowitsch PetscCheck(!l->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 115128b400f6SJacob Faibussowitsch PetscCheck(!l->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 11529566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAReplaceArray(l->A,a)); 1153d5ea218eSStefano Zampini PetscFunctionReturn(0); 1154d5ea218eSStefano Zampini } 1155d5ea218eSStefano Zampini 1156637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArrayWrite_MPIDenseCUDA(Mat A, PetscScalar **a) 1157637a0070SStefano Zampini { 1158637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1159637a0070SStefano Zampini 1160637a0070SStefano Zampini PetscFunctionBegin; 11619566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArrayWrite(l->A,a)); 1162637a0070SStefano Zampini PetscFunctionReturn(0); 1163637a0070SStefano Zampini } 1164637a0070SStefano Zampini 1165637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArrayWrite_MPIDenseCUDA(Mat A, PetscScalar **a) 1166637a0070SStefano Zampini { 1167637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1168637a0070SStefano Zampini 1169637a0070SStefano Zampini PetscFunctionBegin; 11709566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArrayWrite(l->A,a)); 1171637a0070SStefano Zampini PetscFunctionReturn(0); 1172637a0070SStefano Zampini } 1173637a0070SStefano Zampini 1174637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArrayRead_MPIDenseCUDA(Mat A, const PetscScalar **a) 1175637a0070SStefano Zampini { 1176637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1177637a0070SStefano Zampini 1178637a0070SStefano Zampini PetscFunctionBegin; 11799566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArrayRead(l->A,a)); 1180637a0070SStefano Zampini PetscFunctionReturn(0); 1181637a0070SStefano Zampini } 1182637a0070SStefano Zampini 1183637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArrayRead_MPIDenseCUDA(Mat A, const PetscScalar **a) 1184637a0070SStefano Zampini { 1185637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1186637a0070SStefano Zampini 1187637a0070SStefano Zampini PetscFunctionBegin; 11889566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArrayRead(l->A,a)); 1189637a0070SStefano Zampini PetscFunctionReturn(0); 1190637a0070SStefano Zampini } 1191637a0070SStefano Zampini 1192637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArray_MPIDenseCUDA(Mat A, PetscScalar **a) 1193637a0070SStefano Zampini { 1194637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1195637a0070SStefano Zampini 1196637a0070SStefano Zampini PetscFunctionBegin; 11979566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArray(l->A,a)); 1198637a0070SStefano Zampini PetscFunctionReturn(0); 1199637a0070SStefano Zampini } 1200637a0070SStefano Zampini 1201637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArray_MPIDenseCUDA(Mat A, PetscScalar **a) 1202637a0070SStefano Zampini { 1203637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1204637a0070SStefano Zampini 1205637a0070SStefano Zampini PetscFunctionBegin; 12069566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArray(l->A,a)); 1207637a0070SStefano Zampini PetscFunctionReturn(0); 1208637a0070SStefano Zampini } 1209637a0070SStefano Zampini 12106947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecWrite_MPIDense(Mat,PetscInt,Vec*); 12116947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecRead_MPIDense(Mat,PetscInt,Vec*); 12126947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVec_MPIDense(Mat,PetscInt,Vec*); 12136947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDense(Mat,PetscInt,Vec*); 12146947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecRead_MPIDense(Mat,PetscInt,Vec*); 12156947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVec_MPIDense(Mat,PetscInt,Vec*); 12165ea7661aSPierre Jolivet static PetscErrorCode MatDenseRestoreSubMatrix_MPIDense(Mat,Mat*); 12176947451fSStefano Zampini 1218637a0070SStefano Zampini static PetscErrorCode MatBindToCPU_MPIDenseCUDA(Mat mat,PetscBool bind) 1219637a0070SStefano Zampini { 1220637a0070SStefano Zampini Mat_MPIDense *d = (Mat_MPIDense*)mat->data; 1221637a0070SStefano Zampini 1222637a0070SStefano Zampini PetscFunctionBegin; 122328b400f6SJacob Faibussowitsch PetscCheck(!d->vecinuse,PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 122428b400f6SJacob Faibussowitsch PetscCheck(!d->matinuse,PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1225637a0070SStefano Zampini if (d->A) { 12269566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(d->A,bind)); 1227637a0070SStefano Zampini } 1228637a0070SStefano Zampini mat->boundtocpu = bind; 12296947451fSStefano Zampini if (!bind) { 12306947451fSStefano Zampini PetscBool iscuda; 12316947451fSStefano Zampini 12329566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)d->cvec,VECMPICUDA,&iscuda)); 12336947451fSStefano Zampini if (!iscuda) { 12349566063dSJacob Faibussowitsch PetscCall(VecDestroy(&d->cvec)); 1235616b8fbbSStefano Zampini } 12369566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)d->cmat,MATMPIDENSECUDA,&iscuda)); 1237616b8fbbSStefano Zampini if (!iscuda) { 12389566063dSJacob Faibussowitsch PetscCall(MatDestroy(&d->cmat)); 12396947451fSStefano Zampini } 12409566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDenseCUDA)); 12419566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDenseCUDA)); 12429566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDenseCUDA)); 12439566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDenseCUDA)); 12449566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDenseCUDA)); 12459566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDenseCUDA)); 12466947451fSStefano Zampini } else { 12479566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDense)); 12489566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDense)); 12499566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDense)); 12509566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDense)); 12519566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDense)); 12529566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDense)); 1253616b8fbbSStefano Zampini } 1254616b8fbbSStefano Zampini if (d->cmat) { 12559566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(d->cmat,bind)); 12566947451fSStefano Zampini } 1257637a0070SStefano Zampini PetscFunctionReturn(0); 1258637a0070SStefano Zampini } 1259637a0070SStefano Zampini 1260637a0070SStefano Zampini PetscErrorCode MatMPIDenseCUDASetPreallocation(Mat A, PetscScalar *d_data) 1261637a0070SStefano Zampini { 1262637a0070SStefano Zampini Mat_MPIDense *d = (Mat_MPIDense*)A->data; 1263637a0070SStefano Zampini PetscBool iscuda; 1264637a0070SStefano Zampini 1265637a0070SStefano Zampini PetscFunctionBegin; 1266d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 12679566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A,MATMPIDENSECUDA,&iscuda)); 1268637a0070SStefano Zampini if (!iscuda) PetscFunctionReturn(0); 12699566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->rmap)); 12709566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->cmap)); 1271637a0070SStefano Zampini if (!d->A) { 12729566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF,&d->A)); 12739566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)d->A)); 12749566063dSJacob Faibussowitsch PetscCall(MatSetSizes(d->A,A->rmap->n,A->cmap->N,A->rmap->n,A->cmap->N)); 1275637a0070SStefano Zampini } 12769566063dSJacob Faibussowitsch PetscCall(MatSetType(d->A,MATSEQDENSECUDA)); 12779566063dSJacob Faibussowitsch PetscCall(MatSeqDenseCUDASetPreallocation(d->A,d_data)); 1278637a0070SStefano Zampini A->preallocated = PETSC_TRUE; 1279*6f08ad05SPierre Jolivet A->assembled = PETSC_TRUE; 1280637a0070SStefano Zampini PetscFunctionReturn(0); 1281637a0070SStefano Zampini } 1282637a0070SStefano Zampini #endif 1283637a0070SStefano Zampini 128473a71a0fSBarry Smith static PetscErrorCode MatSetRandom_MPIDense(Mat x,PetscRandom rctx) 128573a71a0fSBarry Smith { 128673a71a0fSBarry Smith Mat_MPIDense *d = (Mat_MPIDense*)x->data; 128773a71a0fSBarry Smith 128873a71a0fSBarry Smith PetscFunctionBegin; 12899566063dSJacob Faibussowitsch PetscCall(MatSetRandom(d->A,rctx)); 129073a71a0fSBarry Smith PetscFunctionReturn(0); 129173a71a0fSBarry Smith } 129273a71a0fSBarry Smith 12933b49f96aSBarry Smith static PetscErrorCode MatMissingDiagonal_MPIDense(Mat A,PetscBool *missing,PetscInt *d) 12943b49f96aSBarry Smith { 12953b49f96aSBarry Smith PetscFunctionBegin; 12963b49f96aSBarry Smith *missing = PETSC_FALSE; 12973b49f96aSBarry Smith PetscFunctionReturn(0); 12983b49f96aSBarry Smith } 12993b49f96aSBarry Smith 13004222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat,Mat,PetscReal,Mat); 1301cc48ffa7SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat,Mat,Mat); 13026718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat,Mat,PetscReal,Mat); 1303a1f9a5e6SStefano Zampini static PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat,Mat,Mat); 13046718818eSStefano Zampini static PetscErrorCode MatEqual_MPIDense(Mat,Mat,PetscBool*); 13056718818eSStefano Zampini static PetscErrorCode MatLoad_MPIDense(Mat,PetscViewer); 1306cc48ffa7SToby Isaac 13078965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/ 130809dc0095SBarry Smith static struct _MatOps MatOps_Values = { MatSetValues_MPIDense, 130909dc0095SBarry Smith MatGetRow_MPIDense, 131009dc0095SBarry Smith MatRestoreRow_MPIDense, 131109dc0095SBarry Smith MatMult_MPIDense, 131297304618SKris Buschelman /* 4*/ MatMultAdd_MPIDense, 13137c922b88SBarry Smith MatMultTranspose_MPIDense, 13147c922b88SBarry Smith MatMultTransposeAdd_MPIDense, 1315f4259b30SLisandro Dalcin NULL, 1316f4259b30SLisandro Dalcin NULL, 1317f4259b30SLisandro Dalcin NULL, 1318f4259b30SLisandro Dalcin /* 10*/ NULL, 1319f4259b30SLisandro Dalcin NULL, 1320f4259b30SLisandro Dalcin NULL, 1321f4259b30SLisandro Dalcin NULL, 132209dc0095SBarry Smith MatTranspose_MPIDense, 132397304618SKris Buschelman /* 15*/ MatGetInfo_MPIDense, 13246e4ee0c6SHong Zhang MatEqual_MPIDense, 132509dc0095SBarry Smith MatGetDiagonal_MPIDense, 13265b2fa520SLois Curfman McInnes MatDiagonalScale_MPIDense, 132709dc0095SBarry Smith MatNorm_MPIDense, 132897304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPIDense, 132909dc0095SBarry Smith MatAssemblyEnd_MPIDense, 133009dc0095SBarry Smith MatSetOption_MPIDense, 133109dc0095SBarry Smith MatZeroEntries_MPIDense, 1332d519adbfSMatthew Knepley /* 24*/ MatZeroRows_MPIDense, 1333f4259b30SLisandro Dalcin NULL, 1334f4259b30SLisandro Dalcin NULL, 1335f4259b30SLisandro Dalcin NULL, 1336f4259b30SLisandro Dalcin NULL, 13374994cf47SJed Brown /* 29*/ MatSetUp_MPIDense, 1338f4259b30SLisandro Dalcin NULL, 1339f4259b30SLisandro Dalcin NULL, 1340c56a70eeSBarry Smith MatGetDiagonalBlock_MPIDense, 1341f4259b30SLisandro Dalcin NULL, 1342d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPIDense, 1343f4259b30SLisandro Dalcin NULL, 1344f4259b30SLisandro Dalcin NULL, 1345f4259b30SLisandro Dalcin NULL, 1346f4259b30SLisandro Dalcin NULL, 1347d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPIDense, 13487dae84e0SHong Zhang MatCreateSubMatrices_MPIDense, 1349f4259b30SLisandro Dalcin NULL, 135009dc0095SBarry Smith MatGetValues_MPIDense, 1351a76f77c3SStefano Zampini MatCopy_MPIDense, 1352f4259b30SLisandro Dalcin /* 44*/ NULL, 135309dc0095SBarry Smith MatScale_MPIDense, 13547d68702bSBarry Smith MatShift_Basic, 1355f4259b30SLisandro Dalcin NULL, 1356f4259b30SLisandro Dalcin NULL, 135773a71a0fSBarry Smith /* 49*/ MatSetRandom_MPIDense, 1358f4259b30SLisandro Dalcin NULL, 1359f4259b30SLisandro Dalcin NULL, 1360f4259b30SLisandro Dalcin NULL, 1361f4259b30SLisandro Dalcin NULL, 1362f4259b30SLisandro Dalcin /* 54*/ NULL, 1363f4259b30SLisandro Dalcin NULL, 1364f4259b30SLisandro Dalcin NULL, 1365f4259b30SLisandro Dalcin NULL, 1366f4259b30SLisandro Dalcin NULL, 13677dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPIDense, 1368b9b97703SBarry Smith MatDestroy_MPIDense, 1369b9b97703SBarry Smith MatView_MPIDense, 1370f4259b30SLisandro Dalcin NULL, 1371f4259b30SLisandro Dalcin NULL, 1372f4259b30SLisandro Dalcin /* 64*/ NULL, 1373f4259b30SLisandro Dalcin NULL, 1374f4259b30SLisandro Dalcin NULL, 1375f4259b30SLisandro Dalcin NULL, 1376f4259b30SLisandro Dalcin NULL, 1377f4259b30SLisandro Dalcin /* 69*/ NULL, 1378f4259b30SLisandro Dalcin NULL, 1379f4259b30SLisandro Dalcin NULL, 1380f4259b30SLisandro Dalcin NULL, 1381f4259b30SLisandro Dalcin NULL, 1382f4259b30SLisandro Dalcin /* 74*/ NULL, 1383f4259b30SLisandro Dalcin NULL, 1384f4259b30SLisandro Dalcin NULL, 1385f4259b30SLisandro Dalcin NULL, 1386f4259b30SLisandro Dalcin NULL, 1387f4259b30SLisandro Dalcin /* 79*/ NULL, 1388f4259b30SLisandro Dalcin NULL, 1389f4259b30SLisandro Dalcin NULL, 1390f4259b30SLisandro Dalcin NULL, 13915bba2384SShri Abhyankar /* 83*/ MatLoad_MPIDense, 1392f4259b30SLisandro Dalcin NULL, 1393f4259b30SLisandro Dalcin NULL, 1394f4259b30SLisandro Dalcin NULL, 1395f4259b30SLisandro Dalcin NULL, 1396f4259b30SLisandro Dalcin NULL, 1397f4259b30SLisandro Dalcin /* 89*/ NULL, 1398f4259b30SLisandro Dalcin NULL, 1399f4259b30SLisandro Dalcin NULL, 1400f4259b30SLisandro Dalcin NULL, 1401f4259b30SLisandro Dalcin NULL, 1402f4259b30SLisandro Dalcin /* 94*/ NULL, 1403f4259b30SLisandro Dalcin NULL, 14046718818eSStefano Zampini MatMatTransposeMultSymbolic_MPIDense_MPIDense, 1405cc48ffa7SToby Isaac MatMatTransposeMultNumeric_MPIDense_MPIDense, 1406f4259b30SLisandro Dalcin NULL, 14074222ddf1SHong Zhang /* 99*/ MatProductSetFromOptions_MPIDense, 1408f4259b30SLisandro Dalcin NULL, 1409f4259b30SLisandro Dalcin NULL, 1410ba337c44SJed Brown MatConjugate_MPIDense, 1411f4259b30SLisandro Dalcin NULL, 1412f4259b30SLisandro Dalcin /*104*/ NULL, 1413ba337c44SJed Brown MatRealPart_MPIDense, 1414ba337c44SJed Brown MatImaginaryPart_MPIDense, 1415f4259b30SLisandro Dalcin NULL, 1416f4259b30SLisandro Dalcin NULL, 1417f4259b30SLisandro Dalcin /*109*/ NULL, 1418f4259b30SLisandro Dalcin NULL, 1419f4259b30SLisandro Dalcin NULL, 142049a6ff4bSBarry Smith MatGetColumnVector_MPIDense, 14213b49f96aSBarry Smith MatMissingDiagonal_MPIDense, 1422f4259b30SLisandro Dalcin /*114*/ NULL, 1423f4259b30SLisandro Dalcin NULL, 1424f4259b30SLisandro Dalcin NULL, 1425f4259b30SLisandro Dalcin NULL, 1426f4259b30SLisandro Dalcin NULL, 1427f4259b30SLisandro Dalcin /*119*/ NULL, 1428f4259b30SLisandro Dalcin NULL, 1429f4259b30SLisandro Dalcin NULL, 1430f4259b30SLisandro Dalcin NULL, 1431f4259b30SLisandro Dalcin NULL, 1432f4259b30SLisandro Dalcin /*124*/ NULL, 1433a873a8cdSSam Reynolds MatGetColumnReductions_MPIDense, 1434f4259b30SLisandro Dalcin NULL, 1435f4259b30SLisandro Dalcin NULL, 1436f4259b30SLisandro Dalcin NULL, 1437f4259b30SLisandro Dalcin /*129*/ NULL, 1438f4259b30SLisandro Dalcin NULL, 14396718818eSStefano Zampini MatTransposeMatMultSymbolic_MPIDense_MPIDense, 1440cb20be35SHong Zhang MatTransposeMatMultNumeric_MPIDense_MPIDense, 1441f4259b30SLisandro Dalcin NULL, 1442f4259b30SLisandro Dalcin /*134*/ NULL, 1443f4259b30SLisandro Dalcin NULL, 1444f4259b30SLisandro Dalcin NULL, 1445f4259b30SLisandro Dalcin NULL, 1446f4259b30SLisandro Dalcin NULL, 1447f4259b30SLisandro Dalcin /*139*/ NULL, 1448f4259b30SLisandro Dalcin NULL, 1449f4259b30SLisandro Dalcin NULL, 1450f4259b30SLisandro Dalcin NULL, 1451f4259b30SLisandro Dalcin NULL, 14524222ddf1SHong Zhang MatCreateMPIMatConcatenateSeqMat_MPIDense, 1453f4259b30SLisandro Dalcin /*145*/ NULL, 1454f4259b30SLisandro Dalcin NULL, 1455f4259b30SLisandro Dalcin NULL 1456ba337c44SJed Brown }; 14578965ea79SLois Curfman McInnes 14587087cfbeSBarry Smith PetscErrorCode MatMPIDenseSetPreallocation_MPIDense(Mat mat,PetscScalar *data) 1459a23d5eceSKris Buschelman { 1460637a0070SStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)mat->data; 1461637a0070SStefano Zampini PetscBool iscuda; 1462a23d5eceSKris Buschelman 1463a23d5eceSKris Buschelman PetscFunctionBegin; 146428b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 14659566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 14669566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 1467637a0070SStefano Zampini if (!a->A) { 14689566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF,&a->A)); 14699566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A)); 14709566063dSJacob Faibussowitsch PetscCall(MatSetSizes(a->A,mat->rmap->n,mat->cmap->N,mat->rmap->n,mat->cmap->N)); 1471637a0070SStefano Zampini } 14729566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)mat,MATMPIDENSECUDA,&iscuda)); 14739566063dSJacob Faibussowitsch PetscCall(MatSetType(a->A,iscuda ? MATSEQDENSECUDA : MATSEQDENSE)); 14749566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(a->A,data)); 1475637a0070SStefano Zampini mat->preallocated = PETSC_TRUE; 1476*6f08ad05SPierre Jolivet mat->assembled = PETSC_TRUE; 1477a23d5eceSKris Buschelman PetscFunctionReturn(0); 1478a23d5eceSKris Buschelman } 1479a23d5eceSKris Buschelman 14804e29119aSPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIDense(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 14814e29119aSPierre Jolivet { 14824e29119aSPierre Jolivet Mat B,C; 14834e29119aSPierre Jolivet 14844e29119aSPierre Jolivet PetscFunctionBegin; 14859566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(A,MAT_INITIAL_MATRIX,&C)); 14869566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqAIJ_SeqDense(C,MATSEQDENSE,MAT_INITIAL_MATRIX,&B)); 14879566063dSJacob Faibussowitsch PetscCall(MatDestroy(&C)); 14884e29119aSPierre Jolivet if (reuse == MAT_REUSE_MATRIX) { 14894e29119aSPierre Jolivet C = *newmat; 14904e29119aSPierre Jolivet } else C = NULL; 14919566063dSJacob Faibussowitsch PetscCall(MatCreateMPIMatConcatenateSeqMat(PetscObjectComm((PetscObject)A),B,A->cmap->n,!C?MAT_INITIAL_MATRIX:MAT_REUSE_MATRIX,&C)); 14929566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 14934e29119aSPierre Jolivet if (reuse == MAT_INPLACE_MATRIX) { 14949566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A,&C)); 14954e29119aSPierre Jolivet } else if (reuse == MAT_INITIAL_MATRIX) *newmat = C; 14964e29119aSPierre Jolivet PetscFunctionReturn(0); 14974e29119aSPierre Jolivet } 14984e29119aSPierre Jolivet 14994e29119aSPierre Jolivet PetscErrorCode MatConvert_MPIDense_MPIAIJ(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 15004e29119aSPierre Jolivet { 15014e29119aSPierre Jolivet Mat B,C; 15024e29119aSPierre Jolivet 15034e29119aSPierre Jolivet PetscFunctionBegin; 15049566063dSJacob Faibussowitsch PetscCall(MatDenseGetLocalMatrix(A,&C)); 15059566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqDense_SeqAIJ(C,MATSEQAIJ,MAT_INITIAL_MATRIX,&B)); 15064e29119aSPierre Jolivet if (reuse == MAT_REUSE_MATRIX) { 15074e29119aSPierre Jolivet C = *newmat; 15084e29119aSPierre Jolivet } else C = NULL; 15099566063dSJacob Faibussowitsch PetscCall(MatCreateMPIMatConcatenateSeqMat(PetscObjectComm((PetscObject)A),B,A->cmap->n,!C?MAT_INITIAL_MATRIX:MAT_REUSE_MATRIX,&C)); 15109566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 15114e29119aSPierre Jolivet if (reuse == MAT_INPLACE_MATRIX) { 15129566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A,&C)); 15134e29119aSPierre Jolivet } else if (reuse == MAT_INITIAL_MATRIX) *newmat = C; 15144e29119aSPierre Jolivet PetscFunctionReturn(0); 15154e29119aSPierre Jolivet } 15164e29119aSPierre Jolivet 151765b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 1518cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIDense_Elemental(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 15198baccfbdSHong Zhang { 15208ea901baSHong Zhang Mat mat_elemental; 152132d7a744SHong Zhang PetscScalar *v; 152232d7a744SHong Zhang PetscInt m=A->rmap->n,N=A->cmap->N,rstart=A->rmap->rstart,i,*rows,*cols; 15238ea901baSHong Zhang 15248baccfbdSHong Zhang PetscFunctionBegin; 1525378336b6SHong Zhang if (reuse == MAT_REUSE_MATRIX) { 1526378336b6SHong Zhang mat_elemental = *newmat; 15279566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(*newmat)); 1528378336b6SHong Zhang } else { 15299566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental)); 15309566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat_elemental,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N)); 15319566063dSJacob Faibussowitsch PetscCall(MatSetType(mat_elemental,MATELEMENTAL)); 15329566063dSJacob Faibussowitsch PetscCall(MatSetUp(mat_elemental)); 15339566063dSJacob Faibussowitsch PetscCall(MatSetOption(mat_elemental,MAT_ROW_ORIENTED,PETSC_FALSE)); 1534378336b6SHong Zhang } 1535378336b6SHong Zhang 15369566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m,&rows,N,&cols)); 153732d7a744SHong Zhang for (i=0; i<N; i++) cols[i] = i; 153832d7a744SHong Zhang for (i=0; i<m; i++) rows[i] = rstart + i; 15398ea901baSHong Zhang 1540637a0070SStefano Zampini /* PETSc-Elemental interface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */ 15419566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(A,&v)); 15429566063dSJacob Faibussowitsch PetscCall(MatSetValues(mat_elemental,m,rows,N,cols,v,ADD_VALUES)); 15439566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY)); 15449566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY)); 15459566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(A,&v)); 15469566063dSJacob Faibussowitsch PetscCall(PetscFree2(rows,cols)); 15478ea901baSHong Zhang 1548511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 15499566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A,&mat_elemental)); 15508ea901baSHong Zhang } else { 15518ea901baSHong Zhang *newmat = mat_elemental; 15528ea901baSHong Zhang } 15538baccfbdSHong Zhang PetscFunctionReturn(0); 15548baccfbdSHong Zhang } 155565b80a83SHong Zhang #endif 15568baccfbdSHong Zhang 1557af53bab2SHong Zhang static PetscErrorCode MatDenseGetColumn_MPIDense(Mat A,PetscInt col,PetscScalar **vals) 155886aefd0dSHong Zhang { 155986aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 156086aefd0dSHong Zhang 156186aefd0dSHong Zhang PetscFunctionBegin; 15629566063dSJacob Faibussowitsch PetscCall(MatDenseGetColumn(mat->A,col,vals)); 156386aefd0dSHong Zhang PetscFunctionReturn(0); 156486aefd0dSHong Zhang } 156586aefd0dSHong Zhang 1566af53bab2SHong Zhang static PetscErrorCode MatDenseRestoreColumn_MPIDense(Mat A,PetscScalar **vals) 156786aefd0dSHong Zhang { 156886aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 156986aefd0dSHong Zhang 157086aefd0dSHong Zhang PetscFunctionBegin; 15719566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreColumn(mat->A,vals)); 157286aefd0dSHong Zhang PetscFunctionReturn(0); 157386aefd0dSHong Zhang } 157486aefd0dSHong Zhang 157594e2cb23SJakub Kruzik PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIDense(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 157694e2cb23SJakub Kruzik { 157794e2cb23SJakub Kruzik Mat_MPIDense *mat; 157894e2cb23SJakub Kruzik PetscInt m,nloc,N; 157994e2cb23SJakub Kruzik 158094e2cb23SJakub Kruzik PetscFunctionBegin; 15819566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat,&m,&N)); 15829566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(inmat,NULL,&nloc)); 158394e2cb23SJakub Kruzik if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 158494e2cb23SJakub Kruzik PetscInt sum; 158594e2cb23SJakub Kruzik 158694e2cb23SJakub Kruzik if (n == PETSC_DECIDE) { 15879566063dSJacob Faibussowitsch PetscCall(PetscSplitOwnership(comm,&n,&N)); 158894e2cb23SJakub Kruzik } 158994e2cb23SJakub Kruzik /* Check sum(n) = N */ 15901c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm)); 159108401ef6SPierre Jolivet PetscCheck(sum == N,PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns %" PetscInt_FMT " != global columns %" PetscInt_FMT,sum,N); 159294e2cb23SJakub Kruzik 15939566063dSJacob Faibussowitsch PetscCall(MatCreateDense(comm,m,n,PETSC_DETERMINE,N,NULL,outmat)); 15949566063dSJacob Faibussowitsch PetscCall(MatSetOption(*outmat,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE)); 159594e2cb23SJakub Kruzik } 159694e2cb23SJakub Kruzik 159794e2cb23SJakub Kruzik /* numeric phase */ 159894e2cb23SJakub Kruzik mat = (Mat_MPIDense*)(*outmat)->data; 15999566063dSJacob Faibussowitsch PetscCall(MatCopy(inmat,mat->A,SAME_NONZERO_PATTERN)); 16009566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY)); 16019566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY)); 160294e2cb23SJakub Kruzik PetscFunctionReturn(0); 160394e2cb23SJakub Kruzik } 160494e2cb23SJakub Kruzik 1605637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1606637a0070SStefano Zampini PetscErrorCode MatConvert_MPIDenseCUDA_MPIDense(Mat M,MatType type,MatReuse reuse,Mat *newmat) 1607637a0070SStefano Zampini { 1608637a0070SStefano Zampini Mat B; 1609637a0070SStefano Zampini Mat_MPIDense *m; 1610637a0070SStefano Zampini 1611637a0070SStefano Zampini PetscFunctionBegin; 1612637a0070SStefano Zampini if (reuse == MAT_INITIAL_MATRIX) { 16139566063dSJacob Faibussowitsch PetscCall(MatDuplicate(M,MAT_COPY_VALUES,newmat)); 1614637a0070SStefano Zampini } else if (reuse == MAT_REUSE_MATRIX) { 16159566063dSJacob Faibussowitsch PetscCall(MatCopy(M,*newmat,SAME_NONZERO_PATTERN)); 1616637a0070SStefano Zampini } 1617637a0070SStefano Zampini 1618637a0070SStefano Zampini B = *newmat; 16199566063dSJacob Faibussowitsch PetscCall(MatBindToCPU_MPIDenseCUDA(B,PETSC_TRUE)); 16209566063dSJacob Faibussowitsch PetscCall(PetscFree(B->defaultvectype)); 16219566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(VECSTANDARD,&B->defaultvectype)); 16229566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B,MATMPIDENSE)); 16239566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpidensecuda_mpidense_C",NULL)); 16249566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaij_mpidensecuda_C",NULL)); 16259566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaijcusparse_mpidensecuda_C",NULL)); 16269566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaij_C",NULL)); 16279566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaijcusparse_C",NULL)); 16289566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArray_C",NULL)); 16299566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayRead_C",NULL)); 16309566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayWrite_C",NULL)); 16319566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArray_C",NULL)); 16329566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayRead_C",NULL)); 16339566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayWrite_C",NULL)); 16349566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAPlaceArray_C",NULL)); 16359566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAResetArray_C",NULL)); 16369566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAReplaceArray_C",NULL)); 1637637a0070SStefano Zampini m = (Mat_MPIDense*)(B)->data; 1638637a0070SStefano Zampini if (m->A) { 16399566063dSJacob Faibussowitsch PetscCall(MatConvert(m->A,MATSEQDENSE,MAT_INPLACE_MATRIX,&m->A)); 1640637a0070SStefano Zampini } 1641637a0070SStefano Zampini B->ops->bindtocpu = NULL; 1642637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_CPU; 1643637a0070SStefano Zampini PetscFunctionReturn(0); 1644637a0070SStefano Zampini } 1645637a0070SStefano Zampini 1646637a0070SStefano Zampini PetscErrorCode MatConvert_MPIDense_MPIDenseCUDA(Mat M,MatType type,MatReuse reuse,Mat *newmat) 1647637a0070SStefano Zampini { 1648637a0070SStefano Zampini Mat B; 1649637a0070SStefano Zampini Mat_MPIDense *m; 1650637a0070SStefano Zampini 1651637a0070SStefano Zampini PetscFunctionBegin; 1652637a0070SStefano Zampini if (reuse == MAT_INITIAL_MATRIX) { 16539566063dSJacob Faibussowitsch PetscCall(MatDuplicate(M,MAT_COPY_VALUES,newmat)); 1654637a0070SStefano Zampini } else if (reuse == MAT_REUSE_MATRIX) { 16559566063dSJacob Faibussowitsch PetscCall(MatCopy(M,*newmat,SAME_NONZERO_PATTERN)); 1656637a0070SStefano Zampini } 1657637a0070SStefano Zampini 1658637a0070SStefano Zampini B = *newmat; 16599566063dSJacob Faibussowitsch PetscCall(PetscFree(B->defaultvectype)); 16609566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(VECCUDA,&B->defaultvectype)); 16619566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B,MATMPIDENSECUDA)); 16629566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpidensecuda_mpidense_C", MatConvert_MPIDenseCUDA_MPIDense)); 16639566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaij_mpidensecuda_C", MatProductSetFromOptions_MPIAIJ_MPIDense)); 16649566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaijcusparse_mpidensecuda_C",MatProductSetFromOptions_MPIAIJ_MPIDense)); 16659566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaij_C", MatProductSetFromOptions_MPIDense_MPIAIJ)); 16669566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaijcusparse_C",MatProductSetFromOptions_MPIDense_MPIAIJ)); 16679566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArray_C", MatDenseCUDAGetArray_MPIDenseCUDA)); 16689566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayRead_C", MatDenseCUDAGetArrayRead_MPIDenseCUDA)); 16699566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayWrite_C", MatDenseCUDAGetArrayWrite_MPIDenseCUDA)); 16709566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArray_C", MatDenseCUDARestoreArray_MPIDenseCUDA)); 16719566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayRead_C", MatDenseCUDARestoreArrayRead_MPIDenseCUDA)); 16729566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayWrite_C", MatDenseCUDARestoreArrayWrite_MPIDenseCUDA)); 16739566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAPlaceArray_C", MatDenseCUDAPlaceArray_MPIDenseCUDA)); 16749566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAResetArray_C", MatDenseCUDAResetArray_MPIDenseCUDA)); 16759566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAReplaceArray_C", MatDenseCUDAReplaceArray_MPIDenseCUDA)); 1676f5ff9c66SStefano Zampini m = (Mat_MPIDense*)(B->data); 1677637a0070SStefano Zampini if (m->A) { 16789566063dSJacob Faibussowitsch PetscCall(MatConvert(m->A,MATSEQDENSECUDA,MAT_INPLACE_MATRIX,&m->A)); 1679637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_BOTH; 1680637a0070SStefano Zampini } else { 1681637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_UNALLOCATED; 1682637a0070SStefano Zampini } 16839566063dSJacob Faibussowitsch PetscCall(MatBindToCPU_MPIDenseCUDA(B,PETSC_FALSE)); 1684637a0070SStefano Zampini 1685637a0070SStefano Zampini B->ops->bindtocpu = MatBindToCPU_MPIDenseCUDA; 1686637a0070SStefano Zampini PetscFunctionReturn(0); 1687637a0070SStefano Zampini } 1688637a0070SStefano Zampini #endif 1689637a0070SStefano Zampini 16906947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVec_MPIDense(Mat A,PetscInt col,Vec *v) 16916947451fSStefano Zampini { 16926947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 16936947451fSStefano Zampini PetscInt lda; 16946947451fSStefano Zampini 16956947451fSStefano Zampini PetscFunctionBegin; 169628b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 169728b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 16986947451fSStefano Zampini if (!a->cvec) { 16999566063dSJacob Faibussowitsch PetscCall(VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 17006947451fSStefano Zampini } 17016947451fSStefano Zampini a->vecinuse = col + 1; 17029566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 17039566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(a->A,(PetscScalar**)&a->ptrinuse)); 17049566063dSJacob Faibussowitsch PetscCall(VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 17056947451fSStefano Zampini *v = a->cvec; 17066947451fSStefano Zampini PetscFunctionReturn(0); 17076947451fSStefano Zampini } 17086947451fSStefano Zampini 17096947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVec_MPIDense(Mat A,PetscInt col,Vec *v) 17106947451fSStefano Zampini { 17116947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17126947451fSStefano Zampini 17136947451fSStefano Zampini PetscFunctionBegin; 171428b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 171528b400f6SJacob Faibussowitsch PetscCheck(a->cvec,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector"); 17166947451fSStefano Zampini a->vecinuse = 0; 17179566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(a->A,(PetscScalar**)&a->ptrinuse)); 17189566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 17196947451fSStefano Zampini *v = NULL; 17206947451fSStefano Zampini PetscFunctionReturn(0); 17216947451fSStefano Zampini } 17226947451fSStefano Zampini 17236947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecRead_MPIDense(Mat A,PetscInt col,Vec *v) 17246947451fSStefano Zampini { 17256947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17266947451fSStefano Zampini PetscInt lda; 17276947451fSStefano Zampini 17286947451fSStefano Zampini PetscFunctionBegin; 172928b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 173028b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 17316947451fSStefano Zampini if (!a->cvec) { 17329566063dSJacob Faibussowitsch PetscCall(VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 17336947451fSStefano Zampini } 17346947451fSStefano Zampini a->vecinuse = col + 1; 17359566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 17369566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A,&a->ptrinuse)); 17379566063dSJacob Faibussowitsch PetscCall(VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 17389566063dSJacob Faibussowitsch PetscCall(VecLockReadPush(a->cvec)); 17396947451fSStefano Zampini *v = a->cvec; 17406947451fSStefano Zampini PetscFunctionReturn(0); 17416947451fSStefano Zampini } 17426947451fSStefano Zampini 17436947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecRead_MPIDense(Mat A,PetscInt col,Vec *v) 17446947451fSStefano Zampini { 17456947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17466947451fSStefano Zampini 17476947451fSStefano Zampini PetscFunctionBegin; 17485f80ce2aSJacob Faibussowitsch PetscCheck(a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 17495f80ce2aSJacob Faibussowitsch PetscCheck(a->cvec,PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 17506947451fSStefano Zampini a->vecinuse = 0; 17519566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A,&a->ptrinuse)); 17529566063dSJacob Faibussowitsch PetscCall(VecLockReadPop(a->cvec)); 17539566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 17546947451fSStefano Zampini *v = NULL; 17556947451fSStefano Zampini PetscFunctionReturn(0); 17566947451fSStefano Zampini } 17576947451fSStefano Zampini 17586947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecWrite_MPIDense(Mat A,PetscInt col,Vec *v) 17596947451fSStefano Zampini { 17606947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17616947451fSStefano Zampini PetscInt lda; 17626947451fSStefano Zampini 17636947451fSStefano Zampini PetscFunctionBegin; 17645f80ce2aSJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 17655f80ce2aSJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 17666947451fSStefano Zampini if (!a->cvec) { 17679566063dSJacob Faibussowitsch PetscCall(VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 17686947451fSStefano Zampini } 17696947451fSStefano Zampini a->vecinuse = col + 1; 17709566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 17719566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(a->A,(PetscScalar**)&a->ptrinuse)); 17729566063dSJacob Faibussowitsch PetscCall(VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 17736947451fSStefano Zampini *v = a->cvec; 17746947451fSStefano Zampini PetscFunctionReturn(0); 17756947451fSStefano Zampini } 17766947451fSStefano Zampini 17776947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDense(Mat A,PetscInt col,Vec *v) 17786947451fSStefano Zampini { 17796947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17806947451fSStefano Zampini 17816947451fSStefano Zampini PetscFunctionBegin; 17825f80ce2aSJacob Faibussowitsch PetscCheck(a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 17835f80ce2aSJacob Faibussowitsch PetscCheck(a->cvec,PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 17846947451fSStefano Zampini a->vecinuse = 0; 17859566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(a->A,(PetscScalar**)&a->ptrinuse)); 17869566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 17876947451fSStefano Zampini *v = NULL; 17886947451fSStefano Zampini PetscFunctionReturn(0); 17896947451fSStefano Zampini } 17906947451fSStefano Zampini 17915ea7661aSPierre Jolivet PetscErrorCode MatDenseGetSubMatrix_MPIDense(Mat A,PetscInt cbegin,PetscInt cend,Mat *v) 17925ea7661aSPierre Jolivet { 17935ea7661aSPierre Jolivet Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1794616b8fbbSStefano Zampini Mat_MPIDense *c; 1795616b8fbbSStefano Zampini MPI_Comm comm; 17965ea7661aSPierre Jolivet 17975ea7661aSPierre Jolivet PetscFunctionBegin; 17989566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A,&comm)); 17995f80ce2aSJacob Faibussowitsch PetscCheck(!a->vecinuse,comm,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 18005f80ce2aSJacob Faibussowitsch PetscCheck(!a->matinuse,comm,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 18015ea7661aSPierre Jolivet if (!a->cmat) { 18029566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,&a->cmat)); 18039566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)a->cmat)); 18049566063dSJacob Faibussowitsch PetscCall(MatSetType(a->cmat,((PetscObject)A)->type_name)); 18059566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->rmap,&a->cmat->rmap)); 18069566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(a->cmat->cmap,cend-cbegin)); 18079566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(a->cmat->cmap)); 1808616b8fbbSStefano Zampini } else if (cend-cbegin != a->cmat->cmap->N) { 18099566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&a->cmat->cmap)); 18109566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm,&a->cmat->cmap)); 18119566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(a->cmat->cmap,cend-cbegin)); 18129566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(a->cmat->cmap)); 18135ea7661aSPierre Jolivet } 1814616b8fbbSStefano Zampini c = (Mat_MPIDense*)a->cmat->data; 18155f80ce2aSJacob Faibussowitsch PetscCheck(!c->A,comm,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 18169566063dSJacob Faibussowitsch PetscCall(MatDenseGetSubMatrix(a->A,cbegin,cend,&c->A)); 1817616b8fbbSStefano Zampini a->cmat->preallocated = PETSC_TRUE; 1818616b8fbbSStefano Zampini a->cmat->assembled = PETSC_TRUE; 18195ea7661aSPierre Jolivet a->matinuse = cbegin + 1; 18205ea7661aSPierre Jolivet *v = a->cmat; 18215ea7661aSPierre Jolivet PetscFunctionReturn(0); 18225ea7661aSPierre Jolivet } 18235ea7661aSPierre Jolivet 18245ea7661aSPierre Jolivet PetscErrorCode MatDenseRestoreSubMatrix_MPIDense(Mat A,Mat *v) 18255ea7661aSPierre Jolivet { 18265ea7661aSPierre Jolivet Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1827616b8fbbSStefano Zampini Mat_MPIDense *c; 18285ea7661aSPierre Jolivet 18295ea7661aSPierre Jolivet PetscFunctionBegin; 18305f80ce2aSJacob Faibussowitsch PetscCheck(a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetSubMatrix() first"); 18315f80ce2aSJacob Faibussowitsch PetscCheck(a->cmat,PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal matrix"); 18325f80ce2aSJacob Faibussowitsch PetscCheck(*v == a->cmat,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Not the matrix obtained from MatDenseGetSubMatrix()"); 18335ea7661aSPierre Jolivet a->matinuse = 0; 1834616b8fbbSStefano Zampini c = (Mat_MPIDense*)a->cmat->data; 18359566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreSubMatrix(a->A,&c->A)); 18365ea7661aSPierre Jolivet *v = NULL; 18375ea7661aSPierre Jolivet PetscFunctionReturn(0); 18385ea7661aSPierre Jolivet } 18395ea7661aSPierre Jolivet 1840002bc6daSRichard Tran Mills /*MC 1841002bc6daSRichard Tran Mills MATMPIDENSE - MATMPIDENSE = "mpidense" - A matrix type to be used for distributed dense matrices. 1842002bc6daSRichard Tran Mills 1843002bc6daSRichard Tran Mills Options Database Keys: 1844002bc6daSRichard Tran Mills . -mat_type mpidense - sets the matrix type to "mpidense" during a call to MatSetFromOptions() 1845002bc6daSRichard Tran Mills 1846002bc6daSRichard Tran Mills Level: beginner 1847002bc6daSRichard Tran Mills 1848002bc6daSRichard Tran Mills .seealso: MatCreateDense() 1849002bc6daSRichard Tran Mills 1850002bc6daSRichard Tran Mills M*/ 18518cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIDense(Mat mat) 1852273d9f13SBarry Smith { 1853273d9f13SBarry Smith Mat_MPIDense *a; 1854273d9f13SBarry Smith 1855273d9f13SBarry Smith PetscFunctionBegin; 18569566063dSJacob Faibussowitsch PetscCall(PetscNewLog(mat,&a)); 1857b0a32e0cSBarry Smith mat->data = (void*)a; 18589566063dSJacob Faibussowitsch PetscCall(PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps))); 1859273d9f13SBarry Smith 1860273d9f13SBarry Smith mat->insertmode = NOT_SET_VALUES; 1861273d9f13SBarry Smith 1862273d9f13SBarry Smith /* build cache for off array entries formed */ 1863273d9f13SBarry Smith a->donotstash = PETSC_FALSE; 18642205254eSKarl Rupp 18659566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)mat),1,&mat->stash)); 1866273d9f13SBarry Smith 1867273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 1868f4259b30SLisandro Dalcin a->lvec = NULL; 1869f4259b30SLisandro Dalcin a->Mvctx = NULL; 1870273d9f13SBarry Smith a->roworiented = PETSC_TRUE; 1871273d9f13SBarry Smith 18729566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",MatDenseGetLDA_MPIDense)); 18739566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseSetLDA_C",MatDenseSetLDA_MPIDense)); 18749566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",MatDenseGetArray_MPIDense)); 18759566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",MatDenseRestoreArray_MPIDense)); 18769566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",MatDenseGetArrayRead_MPIDense)); 18779566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",MatDenseRestoreArrayRead_MPIDense)); 18789566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayWrite_C",MatDenseGetArrayWrite_MPIDense)); 18799566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayWrite_C",MatDenseRestoreArrayWrite_MPIDense)); 18809566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",MatDensePlaceArray_MPIDense)); 18819566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",MatDenseResetArray_MPIDense)); 18829566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseReplaceArray_C",MatDenseReplaceArray_MPIDense)); 18839566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDense)); 18849566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDense)); 18859566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDense)); 18869566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDense)); 18879566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDense)); 18889566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDense)); 18899566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetSubMatrix_C",MatDenseGetSubMatrix_MPIDense)); 18909566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreSubMatrix_C",MatDenseRestoreSubMatrix_MPIDense)); 18919566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpiaij_mpidense_C",MatConvert_MPIAIJ_MPIDense)); 18929566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_mpiaij_C",MatConvert_MPIDense_MPIAIJ)); 18938baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 18949566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",MatConvert_MPIDense_Elemental)); 18958baccfbdSHong Zhang #endif 1896d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 18979566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_scalapack_C",MatConvert_Dense_ScaLAPACK)); 1898d24d4204SJose E. Roman #endif 1899637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 19009566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_mpidensecuda_C",MatConvert_MPIDense_MPIDenseCUDA)); 1901637a0070SStefano Zampini #endif 19029566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",MatMPIDenseSetPreallocation_MPIDense)); 19039566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaij_mpidense_C",MatProductSetFromOptions_MPIAIJ_MPIDense)); 19049566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaij_C",MatProductSetFromOptions_MPIDense_MPIAIJ)); 19056718818eSStefano Zampini #if defined(PETSC_HAVE_CUDA) 19069566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaijcusparse_mpidense_C",MatProductSetFromOptions_MPIAIJ_MPIDense)); 19079566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaijcusparse_C",MatProductSetFromOptions_MPIDense_MPIAIJ)); 19086718818eSStefano Zampini #endif 19098949adfdSHong Zhang 19109566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",MatDenseGetColumn_MPIDense)); 19119566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",MatDenseRestoreColumn_MPIDense)); 19129566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)mat,MATMPIDENSE)); 1913273d9f13SBarry Smith PetscFunctionReturn(0); 1914273d9f13SBarry Smith } 1915273d9f13SBarry Smith 1916209238afSKris Buschelman /*MC 1917637a0070SStefano Zampini MATMPIDENSECUDA - MATMPIDENSECUDA = "mpidensecuda" - A matrix type to be used for distributed dense matrices on GPUs. 1918637a0070SStefano Zampini 1919637a0070SStefano Zampini Options Database Keys: 1920637a0070SStefano Zampini . -mat_type mpidensecuda - sets the matrix type to "mpidensecuda" during a call to MatSetFromOptions() 1921637a0070SStefano Zampini 1922637a0070SStefano Zampini Level: beginner 1923637a0070SStefano Zampini 1924637a0070SStefano Zampini .seealso: 1925637a0070SStefano Zampini 1926637a0070SStefano Zampini M*/ 1927637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1928a4af0ceeSJacob Faibussowitsch #include <petsc/private/deviceimpl.h> 1929637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreate_MPIDenseCUDA(Mat B) 1930637a0070SStefano Zampini { 1931637a0070SStefano Zampini PetscFunctionBegin; 19329566063dSJacob Faibussowitsch PetscCall(PetscDeviceInitialize(PETSC_DEVICE_CUDA)); 19339566063dSJacob Faibussowitsch PetscCall(MatCreate_MPIDense(B)); 19349566063dSJacob Faibussowitsch PetscCall(MatConvert_MPIDense_MPIDenseCUDA(B,MATMPIDENSECUDA,MAT_INPLACE_MATRIX,&B)); 1935637a0070SStefano Zampini PetscFunctionReturn(0); 1936637a0070SStefano Zampini } 1937637a0070SStefano Zampini #endif 1938637a0070SStefano Zampini 1939637a0070SStefano Zampini /*MC 1940002d173eSKris Buschelman MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices. 1941209238afSKris Buschelman 1942209238afSKris Buschelman This matrix type is identical to MATSEQDENSE when constructed with a single process communicator, 1943209238afSKris Buschelman and MATMPIDENSE otherwise. 1944209238afSKris Buschelman 1945209238afSKris Buschelman Options Database Keys: 1946209238afSKris Buschelman . -mat_type dense - sets the matrix type to "dense" during a call to MatSetFromOptions() 1947209238afSKris Buschelman 1948209238afSKris Buschelman Level: beginner 1949209238afSKris Buschelman 19506947451fSStefano Zampini .seealso: MATSEQDENSE,MATMPIDENSE,MATDENSECUDA 19516947451fSStefano Zampini M*/ 19526947451fSStefano Zampini 19536947451fSStefano Zampini /*MC 19546947451fSStefano Zampini MATDENSECUDA - MATDENSECUDA = "densecuda" - A matrix type to be used for dense matrices on GPUs. 19556947451fSStefano Zampini 19566947451fSStefano Zampini This matrix type is identical to MATSEQDENSECUDA when constructed with a single process communicator, 19576947451fSStefano Zampini and MATMPIDENSECUDA otherwise. 19586947451fSStefano Zampini 19596947451fSStefano Zampini Options Database Keys: 19606947451fSStefano Zampini . -mat_type densecuda - sets the matrix type to "densecuda" during a call to MatSetFromOptions() 19616947451fSStefano Zampini 19626947451fSStefano Zampini Level: beginner 19636947451fSStefano Zampini 19646947451fSStefano Zampini .seealso: MATSEQDENSECUDA,MATMPIDENSECUDA,MATDENSE 1965209238afSKris Buschelman M*/ 1966209238afSKris Buschelman 1967273d9f13SBarry Smith /*@C 1968273d9f13SBarry Smith MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries 1969273d9f13SBarry Smith 19708f490ea3SStefano Zampini Collective 1971273d9f13SBarry Smith 1972273d9f13SBarry Smith Input Parameters: 19731c4f3114SJed Brown . B - the matrix 19740298fd71SBarry Smith - data - optional location of matrix data. Set data=NULL for PETSc 1975273d9f13SBarry Smith to control all matrix memory allocation. 1976273d9f13SBarry Smith 1977273d9f13SBarry Smith Notes: 1978273d9f13SBarry Smith The dense format is fully compatible with standard Fortran 77 1979273d9f13SBarry Smith storage by columns. 1980273d9f13SBarry Smith 1981273d9f13SBarry Smith The data input variable is intended primarily for Fortran programmers 1982273d9f13SBarry Smith who wish to allocate their own matrix memory space. Most users should 19830298fd71SBarry Smith set data=NULL. 1984273d9f13SBarry Smith 1985273d9f13SBarry Smith Level: intermediate 1986273d9f13SBarry Smith 1987273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 1988273d9f13SBarry Smith @*/ 19891c4f3114SJed Brown PetscErrorCode MatMPIDenseSetPreallocation(Mat B,PetscScalar *data) 1990273d9f13SBarry Smith { 1991273d9f13SBarry Smith PetscFunctionBegin; 1992d5ea218eSStefano Zampini PetscValidHeaderSpecific(B,MAT_CLASSID,1); 1993cac4c232SBarry Smith PetscTryMethod(B,"MatMPIDenseSetPreallocation_C",(Mat,PetscScalar*),(B,data)); 1994273d9f13SBarry Smith PetscFunctionReturn(0); 1995273d9f13SBarry Smith } 1996273d9f13SBarry Smith 1997d3042a70SBarry Smith /*@ 1998637a0070SStefano Zampini MatDensePlaceArray - Allows one to replace the array in a dense matrix with an 1999d3042a70SBarry Smith array provided by the user. This is useful to avoid copying an array 2000d3042a70SBarry Smith into a matrix 2001d3042a70SBarry Smith 2002d3042a70SBarry Smith Not Collective 2003d3042a70SBarry Smith 2004d3042a70SBarry Smith Input Parameters: 2005d3042a70SBarry Smith + mat - the matrix 2006d3042a70SBarry Smith - array - the array in column major order 2007d3042a70SBarry Smith 2008d3042a70SBarry Smith Notes: 2009d3042a70SBarry Smith You can return to the original array with a call to MatDenseResetArray(). The user is responsible for freeing this array; it will not be 2010d3042a70SBarry Smith freed when the matrix is destroyed. 2011d3042a70SBarry Smith 2012d3042a70SBarry Smith Level: developer 2013d3042a70SBarry Smith 2014d3042a70SBarry Smith .seealso: MatDenseGetArray(), MatDenseResetArray(), VecPlaceArray(), VecGetArray(), VecRestoreArray(), VecReplaceArray(), VecResetArray() 2015d3042a70SBarry Smith 2016d3042a70SBarry Smith @*/ 2017637a0070SStefano Zampini PetscErrorCode MatDensePlaceArray(Mat mat,const PetscScalar *array) 2018d3042a70SBarry Smith { 2019d3042a70SBarry Smith PetscFunctionBegin; 2020d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2021cac4c232SBarry Smith PetscUseMethod(mat,"MatDensePlaceArray_C",(Mat,const PetscScalar*),(mat,array)); 20229566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2023637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 2024637a0070SStefano Zampini mat->offloadmask = PETSC_OFFLOAD_CPU; 2025637a0070SStefano Zampini #endif 2026d3042a70SBarry Smith PetscFunctionReturn(0); 2027d3042a70SBarry Smith } 2028d3042a70SBarry Smith 2029d3042a70SBarry Smith /*@ 2030d3042a70SBarry Smith MatDenseResetArray - Resets the matrix array to that it previously had before the call to MatDensePlaceArray() 2031d3042a70SBarry Smith 2032d3042a70SBarry Smith Not Collective 2033d3042a70SBarry Smith 2034d3042a70SBarry Smith Input Parameters: 2035d3042a70SBarry Smith . mat - the matrix 2036d3042a70SBarry Smith 2037d3042a70SBarry Smith Notes: 2038d3042a70SBarry Smith You can only call this after a call to MatDensePlaceArray() 2039d3042a70SBarry Smith 2040d3042a70SBarry Smith Level: developer 2041d3042a70SBarry Smith 2042d3042a70SBarry Smith .seealso: MatDenseGetArray(), MatDensePlaceArray(), VecPlaceArray(), VecGetArray(), VecRestoreArray(), VecReplaceArray(), VecResetArray() 2043d3042a70SBarry Smith 2044d3042a70SBarry Smith @*/ 2045d3042a70SBarry Smith PetscErrorCode MatDenseResetArray(Mat mat) 2046d3042a70SBarry Smith { 2047d3042a70SBarry Smith PetscFunctionBegin; 2048d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2049cac4c232SBarry Smith PetscUseMethod(mat,"MatDenseResetArray_C",(Mat),(mat)); 20509566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2051d3042a70SBarry Smith PetscFunctionReturn(0); 2052d3042a70SBarry Smith } 2053d3042a70SBarry Smith 2054d5ea218eSStefano Zampini /*@ 2055d5ea218eSStefano Zampini MatDenseReplaceArray - Allows one to replace the array in a dense matrix with an 2056d5ea218eSStefano Zampini array provided by the user. This is useful to avoid copying an array 2057d5ea218eSStefano Zampini into a matrix 2058d5ea218eSStefano Zampini 2059d5ea218eSStefano Zampini Not Collective 2060d5ea218eSStefano Zampini 2061d5ea218eSStefano Zampini Input Parameters: 2062d5ea218eSStefano Zampini + mat - the matrix 2063d5ea218eSStefano Zampini - array - the array in column major order 2064d5ea218eSStefano Zampini 2065d5ea218eSStefano Zampini Notes: 2066d5ea218eSStefano Zampini The memory passed in MUST be obtained with PetscMalloc() and CANNOT be 2067d5ea218eSStefano Zampini freed by the user. It will be freed when the matrix is destroyed. 2068d5ea218eSStefano Zampini 2069d5ea218eSStefano Zampini Level: developer 2070d5ea218eSStefano Zampini 2071d5ea218eSStefano Zampini .seealso: MatDenseGetArray(), VecReplaceArray() 2072d5ea218eSStefano Zampini @*/ 2073d5ea218eSStefano Zampini PetscErrorCode MatDenseReplaceArray(Mat mat,const PetscScalar *array) 2074d5ea218eSStefano Zampini { 2075d5ea218eSStefano Zampini PetscFunctionBegin; 2076d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2077cac4c232SBarry Smith PetscUseMethod(mat,"MatDenseReplaceArray_C",(Mat,const PetscScalar*),(mat,array)); 20789566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2079d5ea218eSStefano Zampini #if defined(PETSC_HAVE_CUDA) 2080d5ea218eSStefano Zampini mat->offloadmask = PETSC_OFFLOAD_CPU; 2081d5ea218eSStefano Zampini #endif 2082d5ea218eSStefano Zampini PetscFunctionReturn(0); 2083d5ea218eSStefano Zampini } 2084d5ea218eSStefano Zampini 2085637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 20868965ea79SLois Curfman McInnes /*@C 2087637a0070SStefano Zampini MatDenseCUDAPlaceArray - Allows one to replace the GPU array in a dense matrix with an 2088637a0070SStefano Zampini array provided by the user. This is useful to avoid copying an array 2089637a0070SStefano Zampini into a matrix 2090637a0070SStefano Zampini 2091637a0070SStefano Zampini Not Collective 2092637a0070SStefano Zampini 2093637a0070SStefano Zampini Input Parameters: 2094637a0070SStefano Zampini + mat - the matrix 2095637a0070SStefano Zampini - array - the array in column major order 2096637a0070SStefano Zampini 2097637a0070SStefano Zampini Notes: 2098637a0070SStefano Zampini You can return to the original array with a call to MatDenseCUDAResetArray(). The user is responsible for freeing this array; it will not be 2099637a0070SStefano Zampini freed when the matrix is destroyed. The array must have been allocated with cudaMalloc(). 2100637a0070SStefano Zampini 2101637a0070SStefano Zampini Level: developer 2102637a0070SStefano Zampini 2103637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDAResetArray() 2104637a0070SStefano Zampini @*/ 2105637a0070SStefano Zampini PetscErrorCode MatDenseCUDAPlaceArray(Mat mat,const PetscScalar *array) 2106637a0070SStefano Zampini { 2107637a0070SStefano Zampini PetscFunctionBegin; 2108d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2109cac4c232SBarry Smith PetscUseMethod(mat,"MatDenseCUDAPlaceArray_C",(Mat,const PetscScalar*),(mat,array)); 21109566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2111637a0070SStefano Zampini mat->offloadmask = PETSC_OFFLOAD_GPU; 2112637a0070SStefano Zampini PetscFunctionReturn(0); 2113637a0070SStefano Zampini } 2114637a0070SStefano Zampini 2115637a0070SStefano Zampini /*@C 2116637a0070SStefano Zampini MatDenseCUDAResetArray - Resets the matrix array to that it previously had before the call to MatDenseCUDAPlaceArray() 2117637a0070SStefano Zampini 2118637a0070SStefano Zampini Not Collective 2119637a0070SStefano Zampini 2120637a0070SStefano Zampini Input Parameters: 2121637a0070SStefano Zampini . mat - the matrix 2122637a0070SStefano Zampini 2123637a0070SStefano Zampini Notes: 2124637a0070SStefano Zampini You can only call this after a call to MatDenseCUDAPlaceArray() 2125637a0070SStefano Zampini 2126637a0070SStefano Zampini Level: developer 2127637a0070SStefano Zampini 2128637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDAPlaceArray() 2129637a0070SStefano Zampini 2130637a0070SStefano Zampini @*/ 2131637a0070SStefano Zampini PetscErrorCode MatDenseCUDAResetArray(Mat mat) 2132637a0070SStefano Zampini { 2133637a0070SStefano Zampini PetscFunctionBegin; 2134d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2135cac4c232SBarry Smith PetscUseMethod(mat,"MatDenseCUDAResetArray_C",(Mat),(mat)); 21369566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2137637a0070SStefano Zampini PetscFunctionReturn(0); 2138637a0070SStefano Zampini } 2139637a0070SStefano Zampini 2140637a0070SStefano Zampini /*@C 2141d5ea218eSStefano Zampini MatDenseCUDAReplaceArray - Allows one to replace the GPU array in a dense matrix with an 2142d5ea218eSStefano Zampini array provided by the user. This is useful to avoid copying an array 2143d5ea218eSStefano Zampini into a matrix 2144d5ea218eSStefano Zampini 2145d5ea218eSStefano Zampini Not Collective 2146d5ea218eSStefano Zampini 2147d5ea218eSStefano Zampini Input Parameters: 2148d5ea218eSStefano Zampini + mat - the matrix 2149d5ea218eSStefano Zampini - array - the array in column major order 2150d5ea218eSStefano Zampini 2151d5ea218eSStefano Zampini Notes: 2152d5ea218eSStefano Zampini This permanently replaces the GPU array and frees the memory associated with the old GPU array. 2153d5ea218eSStefano Zampini The memory passed in CANNOT be freed by the user. It will be freed 2154d5ea218eSStefano Zampini when the matrix is destroyed. The array should respect the matrix leading dimension. 2155d5ea218eSStefano Zampini 2156d5ea218eSStefano Zampini Level: developer 2157d5ea218eSStefano Zampini 2158d5ea218eSStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDAPlaceArray(), MatDenseCUDAResetArray() 2159d5ea218eSStefano Zampini @*/ 2160d5ea218eSStefano Zampini PetscErrorCode MatDenseCUDAReplaceArray(Mat mat,const PetscScalar *array) 2161d5ea218eSStefano Zampini { 2162d5ea218eSStefano Zampini PetscFunctionBegin; 2163d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2164cac4c232SBarry Smith PetscUseMethod(mat,"MatDenseCUDAReplaceArray_C",(Mat,const PetscScalar*),(mat,array)); 21659566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2166d5ea218eSStefano Zampini mat->offloadmask = PETSC_OFFLOAD_GPU; 2167d5ea218eSStefano Zampini PetscFunctionReturn(0); 2168d5ea218eSStefano Zampini } 2169d5ea218eSStefano Zampini 2170d5ea218eSStefano Zampini /*@C 2171637a0070SStefano Zampini MatDenseCUDAGetArrayWrite - Provides write access to the CUDA buffer inside a dense matrix. 2172637a0070SStefano Zampini 2173637a0070SStefano Zampini Not Collective 2174637a0070SStefano Zampini 2175637a0070SStefano Zampini Input Parameters: 2176637a0070SStefano Zampini . A - the matrix 2177637a0070SStefano Zampini 2178637a0070SStefano Zampini Output Parameters 2179637a0070SStefano Zampini . array - the GPU array in column major order 2180637a0070SStefano Zampini 2181637a0070SStefano Zampini Notes: 2182637a0070SStefano Zampini The data on the GPU may not be updated due to operations done on the CPU. If you need updated data, use MatDenseCUDAGetArray(). The array must be restored with MatDenseCUDARestoreArrayWrite() when no longer needed. 2183637a0070SStefano Zampini 2184637a0070SStefano Zampini Level: developer 2185637a0070SStefano Zampini 2186637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayRead(), MatDenseCUDARestoreArrayRead() 2187637a0070SStefano Zampini @*/ 2188637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArrayWrite(Mat A, PetscScalar **a) 2189637a0070SStefano Zampini { 2190637a0070SStefano Zampini PetscFunctionBegin; 2191d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2192cac4c232SBarry Smith PetscUseMethod(A,"MatDenseCUDAGetArrayWrite_C",(Mat,PetscScalar**),(A,a)); 21939566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)A)); 2194637a0070SStefano Zampini PetscFunctionReturn(0); 2195637a0070SStefano Zampini } 2196637a0070SStefano Zampini 2197637a0070SStefano Zampini /*@C 2198637a0070SStefano Zampini MatDenseCUDARestoreArrayWrite - Restore write access to the CUDA buffer inside a dense matrix previously obtained with MatDenseCUDAGetArrayWrite(). 2199637a0070SStefano Zampini 2200637a0070SStefano Zampini Not Collective 2201637a0070SStefano Zampini 2202637a0070SStefano Zampini Input Parameters: 2203637a0070SStefano Zampini + A - the matrix 2204637a0070SStefano Zampini - array - the GPU array in column major order 2205637a0070SStefano Zampini 2206637a0070SStefano Zampini Notes: 2207637a0070SStefano Zampini 2208637a0070SStefano Zampini Level: developer 2209637a0070SStefano Zampini 2210637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead(), MatDenseCUDAGetArrayRead() 2211637a0070SStefano Zampini @*/ 2212637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArrayWrite(Mat A, PetscScalar **a) 2213637a0070SStefano Zampini { 2214637a0070SStefano Zampini PetscFunctionBegin; 2215d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2216cac4c232SBarry Smith PetscUseMethod(A,"MatDenseCUDARestoreArrayWrite_C",(Mat,PetscScalar**),(A,a)); 22179566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)A)); 2218637a0070SStefano Zampini A->offloadmask = PETSC_OFFLOAD_GPU; 2219637a0070SStefano Zampini PetscFunctionReturn(0); 2220637a0070SStefano Zampini } 2221637a0070SStefano Zampini 2222637a0070SStefano Zampini /*@C 2223637a0070SStefano Zampini MatDenseCUDAGetArrayRead - Provides read-only access to the CUDA buffer inside a dense matrix. The array must be restored with MatDenseCUDARestoreArrayRead() when no longer needed. 2224637a0070SStefano Zampini 2225637a0070SStefano Zampini Not Collective 2226637a0070SStefano Zampini 2227637a0070SStefano Zampini Input Parameters: 2228637a0070SStefano Zampini . A - the matrix 2229637a0070SStefano Zampini 2230637a0070SStefano Zampini Output Parameters 2231637a0070SStefano Zampini . array - the GPU array in column major order 2232637a0070SStefano Zampini 2233637a0070SStefano Zampini Notes: 2234637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). 2235637a0070SStefano Zampini 2236637a0070SStefano Zampini Level: developer 2237637a0070SStefano Zampini 2238637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead() 2239637a0070SStefano Zampini @*/ 2240637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArrayRead(Mat A, const PetscScalar **a) 2241637a0070SStefano Zampini { 2242637a0070SStefano Zampini PetscFunctionBegin; 2243d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2244cac4c232SBarry Smith PetscUseMethod(A,"MatDenseCUDAGetArrayRead_C",(Mat,const PetscScalar**),(A,a)); 2245637a0070SStefano Zampini PetscFunctionReturn(0); 2246637a0070SStefano Zampini } 2247637a0070SStefano Zampini 2248637a0070SStefano Zampini /*@C 2249637a0070SStefano Zampini MatDenseCUDARestoreArrayRead - Restore read-only access to the CUDA buffer inside a dense matrix previously obtained with a call to MatDenseCUDAGetArrayRead(). 2250637a0070SStefano Zampini 2251637a0070SStefano Zampini Not Collective 2252637a0070SStefano Zampini 2253637a0070SStefano Zampini Input Parameters: 2254637a0070SStefano Zampini + A - the matrix 2255637a0070SStefano Zampini - array - the GPU array in column major order 2256637a0070SStefano Zampini 2257637a0070SStefano Zampini Notes: 2258637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). 2259637a0070SStefano Zampini 2260637a0070SStefano Zampini Level: developer 2261637a0070SStefano Zampini 2262637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDAGetArrayRead() 2263637a0070SStefano Zampini @*/ 2264637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArrayRead(Mat A, const PetscScalar **a) 2265637a0070SStefano Zampini { 2266637a0070SStefano Zampini PetscFunctionBegin; 2267cac4c232SBarry Smith PetscUseMethod(A,"MatDenseCUDARestoreArrayRead_C",(Mat,const PetscScalar**),(A,a)); 2268637a0070SStefano Zampini PetscFunctionReturn(0); 2269637a0070SStefano Zampini } 2270637a0070SStefano Zampini 2271637a0070SStefano Zampini /*@C 2272637a0070SStefano Zampini MatDenseCUDAGetArray - Provides access to the CUDA buffer inside a dense matrix. The array must be restored with MatDenseCUDARestoreArray() when no longer needed. 2273637a0070SStefano Zampini 2274637a0070SStefano Zampini Not Collective 2275637a0070SStefano Zampini 2276637a0070SStefano Zampini Input Parameters: 2277637a0070SStefano Zampini . A - the matrix 2278637a0070SStefano Zampini 2279637a0070SStefano Zampini Output Parameters 2280637a0070SStefano Zampini . array - the GPU array in column major order 2281637a0070SStefano Zampini 2282637a0070SStefano Zampini Notes: 2283637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). For read-only access, use MatDenseCUDAGetArrayRead(). 2284637a0070SStefano Zampini 2285637a0070SStefano Zampini Level: developer 2286637a0070SStefano Zampini 2287637a0070SStefano Zampini .seealso: MatDenseCUDAGetArrayRead(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead() 2288637a0070SStefano Zampini @*/ 2289637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArray(Mat A, PetscScalar **a) 2290637a0070SStefano Zampini { 2291637a0070SStefano Zampini PetscFunctionBegin; 2292d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2293cac4c232SBarry Smith PetscUseMethod(A,"MatDenseCUDAGetArray_C",(Mat,PetscScalar**),(A,a)); 22949566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)A)); 2295637a0070SStefano Zampini PetscFunctionReturn(0); 2296637a0070SStefano Zampini } 2297637a0070SStefano Zampini 2298637a0070SStefano Zampini /*@C 2299637a0070SStefano Zampini MatDenseCUDARestoreArray - Restore access to the CUDA buffer inside a dense matrix previously obtained with MatDenseCUDAGetArray(). 2300637a0070SStefano Zampini 2301637a0070SStefano Zampini Not Collective 2302637a0070SStefano Zampini 2303637a0070SStefano Zampini Input Parameters: 2304637a0070SStefano Zampini + A - the matrix 2305637a0070SStefano Zampini - array - the GPU array in column major order 2306637a0070SStefano Zampini 2307637a0070SStefano Zampini Notes: 2308637a0070SStefano Zampini 2309637a0070SStefano Zampini Level: developer 2310637a0070SStefano Zampini 2311637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead(), MatDenseCUDAGetArrayRead() 2312637a0070SStefano Zampini @*/ 2313637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArray(Mat A, PetscScalar **a) 2314637a0070SStefano Zampini { 2315637a0070SStefano Zampini PetscFunctionBegin; 2316d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2317cac4c232SBarry Smith PetscUseMethod(A,"MatDenseCUDARestoreArray_C",(Mat,PetscScalar**),(A,a)); 23189566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)A)); 2319637a0070SStefano Zampini A->offloadmask = PETSC_OFFLOAD_GPU; 2320637a0070SStefano Zampini PetscFunctionReturn(0); 2321637a0070SStefano Zampini } 2322637a0070SStefano Zampini #endif 2323637a0070SStefano Zampini 2324637a0070SStefano Zampini /*@C 2325637a0070SStefano Zampini MatCreateDense - Creates a matrix in dense format. 23268965ea79SLois Curfman McInnes 2327d083f849SBarry Smith Collective 2328db81eaa0SLois Curfman McInnes 23298965ea79SLois Curfman McInnes Input Parameters: 2330db81eaa0SLois Curfman McInnes + comm - MPI communicator 23318965ea79SLois Curfman McInnes . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2332db81eaa0SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 23338965ea79SLois Curfman McInnes . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 2334db81eaa0SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 23356cfe35ddSJose E. Roman - data - optional location of matrix data. Set data=NULL (PETSC_NULL_SCALAR for Fortran users) for PETSc 2336dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 23378965ea79SLois Curfman McInnes 23388965ea79SLois Curfman McInnes Output Parameter: 2339477f1c0bSLois Curfman McInnes . A - the matrix 23408965ea79SLois Curfman McInnes 2341b259b22eSLois Curfman McInnes Notes: 234239ddd567SLois Curfman McInnes The dense format is fully compatible with standard Fortran 77 234339ddd567SLois Curfman McInnes storage by columns. 2344002bc6daSRichard Tran Mills Note that, although local portions of the matrix are stored in column-major 2345002bc6daSRichard Tran Mills order, the matrix is partitioned across MPI ranks by row. 23468965ea79SLois Curfman McInnes 234718f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 234818f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 23496cfe35ddSJose E. Roman set data=NULL (PETSC_NULL_SCALAR for Fortran users). 235018f449edSLois Curfman McInnes 23518965ea79SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 23528965ea79SLois Curfman McInnes (possibly both). 23538965ea79SLois Curfman McInnes 2354027ccd11SLois Curfman McInnes Level: intermediate 2355027ccd11SLois Curfman McInnes 235639ddd567SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 23578965ea79SLois Curfman McInnes @*/ 235869b1f4b7SBarry Smith PetscErrorCode MatCreateDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 23598965ea79SLois Curfman McInnes { 23603a40ed3dSBarry Smith PetscFunctionBegin; 23619566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,A)); 23629566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A,m,n,M,N)); 2363*6f08ad05SPierre Jolivet PetscCall(MatSetType(*A,MATDENSE)); 23649566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(*A,data)); 2365*6f08ad05SPierre Jolivet PetscCall(MatMPIDenseSetPreallocation(*A,data)); 23663a40ed3dSBarry Smith PetscFunctionReturn(0); 23678965ea79SLois Curfman McInnes } 23688965ea79SLois Curfman McInnes 2369637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 2370637a0070SStefano Zampini /*@C 2371637a0070SStefano Zampini MatCreateDenseCUDA - Creates a matrix in dense format using CUDA. 2372637a0070SStefano Zampini 2373637a0070SStefano Zampini Collective 2374637a0070SStefano Zampini 2375637a0070SStefano Zampini Input Parameters: 2376637a0070SStefano Zampini + comm - MPI communicator 2377637a0070SStefano Zampini . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2378637a0070SStefano Zampini . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 2379637a0070SStefano Zampini . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 2380637a0070SStefano Zampini . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 2381637a0070SStefano Zampini - data - optional location of GPU matrix data. Set data=NULL for PETSc 2382637a0070SStefano Zampini to control matrix memory allocation. 2383637a0070SStefano Zampini 2384637a0070SStefano Zampini Output Parameter: 2385637a0070SStefano Zampini . A - the matrix 2386637a0070SStefano Zampini 2387637a0070SStefano Zampini Notes: 2388637a0070SStefano Zampini 2389637a0070SStefano Zampini Level: intermediate 2390637a0070SStefano Zampini 2391637a0070SStefano Zampini .seealso: MatCreate(), MatCreateDense() 2392637a0070SStefano Zampini @*/ 2393637a0070SStefano Zampini PetscErrorCode MatCreateDenseCUDA(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 2394637a0070SStefano Zampini { 2395637a0070SStefano Zampini PetscFunctionBegin; 23969566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,A)); 2397637a0070SStefano Zampini PetscValidLogicalCollectiveBool(*A,!!data,6); 23989566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A,m,n,M,N)); 2399*6f08ad05SPierre Jolivet PetscCall(MatSetType(*A,MATDENSECUDA)); 24009566063dSJacob Faibussowitsch PetscCall(MatSeqDenseCUDASetPreallocation(*A,data)); 2401*6f08ad05SPierre Jolivet PetscCall(MatMPIDenseCUDASetPreallocation(*A,data)); 2402637a0070SStefano Zampini PetscFunctionReturn(0); 2403637a0070SStefano Zampini } 2404637a0070SStefano Zampini #endif 2405637a0070SStefano Zampini 24066849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat) 24078965ea79SLois Curfman McInnes { 24088965ea79SLois Curfman McInnes Mat mat; 24093501a2bdSLois Curfman McInnes Mat_MPIDense *a,*oldmat = (Mat_MPIDense*)A->data; 24108965ea79SLois Curfman McInnes 24113a40ed3dSBarry Smith PetscFunctionBegin; 2412f4259b30SLisandro Dalcin *newmat = NULL; 24139566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&mat)); 24149566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N)); 24159566063dSJacob Faibussowitsch PetscCall(MatSetType(mat,((PetscObject)A)->type_name)); 2416834f8fabSBarry Smith a = (Mat_MPIDense*)mat->data; 24175aa7edbeSHong Zhang 2418d5f3da31SBarry Smith mat->factortype = A->factortype; 2419c456f294SBarry Smith mat->assembled = PETSC_TRUE; 2420273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 24218965ea79SLois Curfman McInnes 2422e0fa3b82SLois Curfman McInnes mat->insertmode = NOT_SET_VALUES; 24233782ba37SSatish Balay a->donotstash = oldmat->donotstash; 2424e04c1aa4SHong Zhang 24259566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->rmap,&mat->rmap)); 24269566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->cmap,&mat->cmap)); 24278965ea79SLois Curfman McInnes 24289566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A,cpvalues,&a->A)); 24299566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A)); 243001b82886SBarry Smith 24318965ea79SLois Curfman McInnes *newmat = mat; 24323a40ed3dSBarry Smith PetscFunctionReturn(0); 24338965ea79SLois Curfman McInnes } 24348965ea79SLois Curfman McInnes 2435eb91f321SVaclav Hapla PetscErrorCode MatLoad_MPIDense(Mat newMat, PetscViewer viewer) 2436eb91f321SVaclav Hapla { 243787d5ce66SSatish Balay PetscBool isbinary; 243887d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 243987d5ce66SSatish Balay PetscBool ishdf5; 244087d5ce66SSatish Balay #endif 2441eb91f321SVaclav Hapla 2442eb91f321SVaclav Hapla PetscFunctionBegin; 2443eb91f321SVaclav Hapla PetscValidHeaderSpecific(newMat,MAT_CLASSID,1); 2444eb91f321SVaclav Hapla PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2); 2445eb91f321SVaclav Hapla /* force binary viewer to load .info file if it has not yet done so */ 24469566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 24479566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary)); 244887d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 24499566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERHDF5, &ishdf5)); 245087d5ce66SSatish Balay #endif 2451eb91f321SVaclav Hapla if (isbinary) { 24529566063dSJacob Faibussowitsch PetscCall(MatLoad_Dense_Binary(newMat,viewer)); 2453eb91f321SVaclav Hapla #if defined(PETSC_HAVE_HDF5) 245487d5ce66SSatish Balay } else if (ishdf5) { 24559566063dSJacob Faibussowitsch PetscCall(MatLoad_Dense_HDF5(newMat,viewer)); 2456eb91f321SVaclav Hapla #endif 245798921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)newMat),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)newMat)->type_name); 2458eb91f321SVaclav Hapla PetscFunctionReturn(0); 2459eb91f321SVaclav Hapla } 2460eb91f321SVaclav Hapla 24616718818eSStefano Zampini static PetscErrorCode MatEqual_MPIDense(Mat A,Mat B,PetscBool *flag) 24626e4ee0c6SHong Zhang { 24636e4ee0c6SHong Zhang Mat_MPIDense *matB = (Mat_MPIDense*)B->data,*matA = (Mat_MPIDense*)A->data; 24646e4ee0c6SHong Zhang Mat a,b; 2465ace3abfcSBarry Smith PetscBool flg; 246690ace30eSBarry Smith 24676e4ee0c6SHong Zhang PetscFunctionBegin; 24686e4ee0c6SHong Zhang a = matA->A; 24696e4ee0c6SHong Zhang b = matB->A; 24709566063dSJacob Faibussowitsch PetscCall(MatEqual(a,b,&flg)); 24711c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A))); 24726e4ee0c6SHong Zhang PetscFunctionReturn(0); 24736e4ee0c6SHong Zhang } 247490ace30eSBarry Smith 24756718818eSStefano Zampini PetscErrorCode MatDestroy_MatTransMatMult_MPIDense_MPIDense(void *data) 2476baa3c1c6SHong Zhang { 24776718818eSStefano Zampini Mat_TransMatMultDense *atb = (Mat_TransMatMultDense *)data; 2478baa3c1c6SHong Zhang 2479baa3c1c6SHong Zhang PetscFunctionBegin; 24809566063dSJacob Faibussowitsch PetscCall(PetscFree2(atb->sendbuf,atb->recvcounts)); 24819566063dSJacob Faibussowitsch PetscCall(MatDestroy(&atb->atb)); 24829566063dSJacob Faibussowitsch PetscCall(PetscFree(atb)); 2483baa3c1c6SHong Zhang PetscFunctionReturn(0); 2484baa3c1c6SHong Zhang } 2485baa3c1c6SHong Zhang 24866718818eSStefano Zampini PetscErrorCode MatDestroy_MatMatTransMult_MPIDense_MPIDense(void *data) 2487cc48ffa7SToby Isaac { 24886718818eSStefano Zampini Mat_MatTransMultDense *abt = (Mat_MatTransMultDense *)data; 2489cc48ffa7SToby Isaac 2490cc48ffa7SToby Isaac PetscFunctionBegin; 24919566063dSJacob Faibussowitsch PetscCall(PetscFree2(abt->buf[0],abt->buf[1])); 24929566063dSJacob Faibussowitsch PetscCall(PetscFree2(abt->recvcounts,abt->recvdispls)); 24939566063dSJacob Faibussowitsch PetscCall(PetscFree(abt)); 2494cc48ffa7SToby Isaac PetscFunctionReturn(0); 2495cc48ffa7SToby Isaac } 2496cc48ffa7SToby Isaac 24976718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 2498cb20be35SHong Zhang { 2499baa3c1c6SHong Zhang Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 25006718818eSStefano Zampini Mat_TransMatMultDense *atb; 2501cb20be35SHong Zhang MPI_Comm comm; 25026718818eSStefano Zampini PetscMPIInt size,*recvcounts; 25036718818eSStefano Zampini PetscScalar *carray,*sendbuf; 2504637a0070SStefano Zampini const PetscScalar *atbarray; 2505a1f9a5e6SStefano Zampini PetscInt i,cN=C->cmap->N,proc,k,j,lda; 2506e68c0b26SHong Zhang const PetscInt *ranges; 2507cb20be35SHong Zhang 2508cb20be35SHong Zhang PetscFunctionBegin; 25096718818eSStefano Zampini MatCheckProduct(C,3); 25105f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 25116718818eSStefano Zampini atb = (Mat_TransMatMultDense *)C->product->data; 25126718818eSStefano Zampini recvcounts = atb->recvcounts; 25136718818eSStefano Zampini sendbuf = atb->sendbuf; 25146718818eSStefano Zampini 25159566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A,&comm)); 25169566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 2517e68c0b26SHong Zhang 2518c5ef1628SHong Zhang /* compute atbarray = aseq^T * bseq */ 25199566063dSJacob Faibussowitsch PetscCall(MatTransposeMatMult(a->A,b->A,atb->atb ? MAT_REUSE_MATRIX : MAT_INITIAL_MATRIX,PETSC_DEFAULT,&atb->atb)); 2520cb20be35SHong Zhang 25219566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRanges(C,&ranges)); 2522cb20be35SHong Zhang 2523660d5466SHong Zhang /* arrange atbarray into sendbuf */ 25249566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(atb->atb,&atbarray)); 25259566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(atb->atb,&lda)); 2526637a0070SStefano Zampini for (proc=0, k=0; proc<size; proc++) { 2527baa3c1c6SHong Zhang for (j=0; j<cN; j++) { 2528a1f9a5e6SStefano Zampini for (i=ranges[proc]; i<ranges[proc+1]; i++) sendbuf[k++] = atbarray[i+j*lda]; 2529cb20be35SHong Zhang } 2530cb20be35SHong Zhang } 25319566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(atb->atb,&atbarray)); 2532637a0070SStefano Zampini 2533c5ef1628SHong Zhang /* sum all atbarray to local values of C */ 25349566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(c->A,&carray)); 25359566063dSJacob Faibussowitsch PetscCallMPI(MPI_Reduce_scatter(sendbuf,carray,recvcounts,MPIU_SCALAR,MPIU_SUM,comm)); 25369566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(c->A,&carray)); 25379566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY)); 25389566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY)); 2539cb20be35SHong Zhang PetscFunctionReturn(0); 2540cb20be35SHong Zhang } 2541cb20be35SHong Zhang 25426718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat C) 2543cb20be35SHong Zhang { 2544cb20be35SHong Zhang MPI_Comm comm; 2545baa3c1c6SHong Zhang PetscMPIInt size; 2546660d5466SHong Zhang PetscInt cm=A->cmap->n,cM,cN=B->cmap->N; 2547baa3c1c6SHong Zhang Mat_TransMatMultDense *atb; 25486718818eSStefano Zampini PetscBool cisdense; 25490acaeb71SStefano Zampini PetscInt i; 25500acaeb71SStefano Zampini const PetscInt *ranges; 2551cb20be35SHong Zhang 2552cb20be35SHong Zhang PetscFunctionBegin; 25536718818eSStefano Zampini MatCheckProduct(C,3); 25545f80ce2aSJacob Faibussowitsch PetscCheck(!C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty"); 25559566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A,&comm)); 2556cb20be35SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) { 255798921bdaSJacob Faibussowitsch SETERRQ(comm,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != B (%" PetscInt_FMT ",%" PetscInt_FMT ")",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 2558cb20be35SHong Zhang } 2559cb20be35SHong Zhang 25604222ddf1SHong Zhang /* create matrix product C */ 25619566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C,cm,B->cmap->n,A->cmap->N,B->cmap->N)); 25629566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C,&cisdense,MATMPIDENSE,MATMPIDENSECUDA,"")); 25636718818eSStefano Zampini if (!cisdense) { 25649566063dSJacob Faibussowitsch PetscCall(MatSetType(C,((PetscObject)A)->type_name)); 25656718818eSStefano Zampini } 25669566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 2567baa3c1c6SHong Zhang 25684222ddf1SHong Zhang /* create data structure for reuse C */ 25699566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 25709566063dSJacob Faibussowitsch PetscCall(PetscNew(&atb)); 25714222ddf1SHong Zhang cM = C->rmap->N; 25729566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(cM*cN,&atb->sendbuf,size,&atb->recvcounts)); 25739566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRanges(C,&ranges)); 25740acaeb71SStefano Zampini for (i=0; i<size; i++) atb->recvcounts[i] = (ranges[i+1] - ranges[i])*cN; 2575baa3c1c6SHong Zhang 25766718818eSStefano Zampini C->product->data = atb; 25776718818eSStefano Zampini C->product->destroy = MatDestroy_MatTransMatMult_MPIDense_MPIDense; 2578cb20be35SHong Zhang PetscFunctionReturn(0); 2579cb20be35SHong Zhang } 2580cb20be35SHong Zhang 25814222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat A, Mat B, PetscReal fill, Mat C) 2582cb20be35SHong Zhang { 2583cc48ffa7SToby Isaac MPI_Comm comm; 2584cc48ffa7SToby Isaac PetscMPIInt i, size; 2585cc48ffa7SToby Isaac PetscInt maxRows, bufsiz; 2586cc48ffa7SToby Isaac PetscMPIInt tag; 25874222ddf1SHong Zhang PetscInt alg; 2588cc48ffa7SToby Isaac Mat_MatTransMultDense *abt; 25894222ddf1SHong Zhang Mat_Product *product = C->product; 25904222ddf1SHong Zhang PetscBool flg; 2591cc48ffa7SToby Isaac 2592cc48ffa7SToby Isaac PetscFunctionBegin; 25936718818eSStefano Zampini MatCheckProduct(C,4); 25945f80ce2aSJacob Faibussowitsch PetscCheck(!C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty"); 25954222ddf1SHong Zhang /* check local size of A and B */ 25965f80ce2aSJacob Faibussowitsch PetscCheck(A->cmap->n == B->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local column dimensions are incompatible, A (%" PetscInt_FMT ") != B (%" PetscInt_FMT ")",A->cmap->n,B->cmap->n); 2597cc48ffa7SToby Isaac 25989566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg,"allgatherv",&flg)); 2599637a0070SStefano Zampini alg = flg ? 0 : 1; 2600cc48ffa7SToby Isaac 26014222ddf1SHong Zhang /* setup matrix product C */ 26029566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C,A->rmap->n,B->rmap->n,A->rmap->N,B->rmap->N)); 26039566063dSJacob Faibussowitsch PetscCall(MatSetType(C,MATMPIDENSE)); 26049566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 26059566063dSJacob Faibussowitsch PetscCall(PetscObjectGetNewTag((PetscObject)C,&tag)); 26064222ddf1SHong Zhang 26074222ddf1SHong Zhang /* create data structure for reuse C */ 26089566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C,&comm)); 26099566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 26109566063dSJacob Faibussowitsch PetscCall(PetscNew(&abt)); 2611cc48ffa7SToby Isaac abt->tag = tag; 2612faa55883SToby Isaac abt->alg = alg; 2613faa55883SToby Isaac switch (alg) { 26144222ddf1SHong Zhang case 1: /* alg: "cyclic" */ 2615cc48ffa7SToby Isaac for (maxRows = 0, i = 0; i < size; i++) maxRows = PetscMax(maxRows, (B->rmap->range[i + 1] - B->rmap->range[i])); 2616cc48ffa7SToby Isaac bufsiz = A->cmap->N * maxRows; 26179566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(bufsiz,&(abt->buf[0]),bufsiz,&(abt->buf[1]))); 2618faa55883SToby Isaac break; 26194222ddf1SHong Zhang default: /* alg: "allgatherv" */ 26209566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(B->rmap->n * B->cmap->N, &(abt->buf[0]), B->rmap->N * B->cmap->N, &(abt->buf[1]))); 26219566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(size,&(abt->recvcounts),size+1,&(abt->recvdispls))); 2622faa55883SToby Isaac for (i = 0; i <= size; i++) abt->recvdispls[i] = B->rmap->range[i] * A->cmap->N; 2623faa55883SToby Isaac for (i = 0; i < size; i++) abt->recvcounts[i] = abt->recvdispls[i + 1] - abt->recvdispls[i]; 2624faa55883SToby Isaac break; 2625faa55883SToby Isaac } 2626cc48ffa7SToby Isaac 26276718818eSStefano Zampini C->product->data = abt; 26286718818eSStefano Zampini C->product->destroy = MatDestroy_MatMatTransMult_MPIDense_MPIDense; 26294222ddf1SHong Zhang C->ops->mattransposemultnumeric = MatMatTransposeMultNumeric_MPIDense_MPIDense; 2630cc48ffa7SToby Isaac PetscFunctionReturn(0); 2631cc48ffa7SToby Isaac } 2632cc48ffa7SToby Isaac 2633faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(Mat A, Mat B, Mat C) 2634cc48ffa7SToby Isaac { 2635cc48ffa7SToby Isaac Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 26366718818eSStefano Zampini Mat_MatTransMultDense *abt; 2637cc48ffa7SToby Isaac MPI_Comm comm; 2638cc48ffa7SToby Isaac PetscMPIInt rank,size, sendsiz, recvsiz, sendto, recvfrom, recvisfrom; 2639f4259b30SLisandro Dalcin PetscScalar *sendbuf, *recvbuf=NULL, *cv; 2640cc48ffa7SToby Isaac PetscInt i,cK=A->cmap->N,k,j,bn; 2641cc48ffa7SToby Isaac PetscScalar _DOne=1.0,_DZero=0.0; 2642637a0070SStefano Zampini const PetscScalar *av,*bv; 264323fff9afSBarry Smith PetscBLASInt cm, cn, ck, alda, blda = 0, clda; 2644cc48ffa7SToby Isaac MPI_Request reqs[2]; 2645cc48ffa7SToby Isaac const PetscInt *ranges; 2646cc48ffa7SToby Isaac 2647cc48ffa7SToby Isaac PetscFunctionBegin; 26486718818eSStefano Zampini MatCheckProduct(C,3); 26495f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 26506718818eSStefano Zampini abt = (Mat_MatTransMultDense*)C->product->data; 26519566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C,&comm)); 26529566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm,&rank)); 26539566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 26549566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A,&av)); 26559566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(b->A,&bv)); 26569566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(c->A,&cv)); 26579566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&i)); 26589566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i,&alda)); 26599566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(b->A,&i)); 26609566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i,&blda)); 26619566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(c->A,&i)); 26629566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i,&clda)); 26639566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRanges(B,&ranges)); 2664cc48ffa7SToby Isaac bn = B->rmap->n; 2665637a0070SStefano Zampini if (blda == bn) { 2666637a0070SStefano Zampini sendbuf = (PetscScalar*)bv; 2667cc48ffa7SToby Isaac } else { 2668cc48ffa7SToby Isaac sendbuf = abt->buf[0]; 2669cc48ffa7SToby Isaac for (k = 0, i = 0; i < cK; i++) { 2670cc48ffa7SToby Isaac for (j = 0; j < bn; j++, k++) { 2671637a0070SStefano Zampini sendbuf[k] = bv[i * blda + j]; 2672cc48ffa7SToby Isaac } 2673cc48ffa7SToby Isaac } 2674cc48ffa7SToby Isaac } 2675cc48ffa7SToby Isaac if (size > 1) { 2676cc48ffa7SToby Isaac sendto = (rank + size - 1) % size; 2677cc48ffa7SToby Isaac recvfrom = (rank + size + 1) % size; 2678cc48ffa7SToby Isaac } else { 2679cc48ffa7SToby Isaac sendto = recvfrom = 0; 2680cc48ffa7SToby Isaac } 26819566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(cK,&ck)); 26829566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(c->A->rmap->n,&cm)); 2683cc48ffa7SToby Isaac recvisfrom = rank; 2684cc48ffa7SToby Isaac for (i = 0; i < size; i++) { 2685cc48ffa7SToby Isaac /* we have finished receiving in sending, bufs can be read/modified */ 2686cc48ffa7SToby Isaac PetscInt nextrecvisfrom = (recvisfrom + 1) % size; /* which process the next recvbuf will originate on */ 2687cc48ffa7SToby Isaac PetscInt nextbn = ranges[nextrecvisfrom + 1] - ranges[nextrecvisfrom]; 2688cc48ffa7SToby Isaac 2689cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2690cc48ffa7SToby Isaac /* start the cyclic sends from sendbuf, to recvbuf (which will switch to sendbuf) */ 2691cc48ffa7SToby Isaac sendsiz = cK * bn; 2692cc48ffa7SToby Isaac recvsiz = cK * nextbn; 2693cc48ffa7SToby Isaac recvbuf = (i & 1) ? abt->buf[0] : abt->buf[1]; 26949566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(sendbuf, sendsiz, MPIU_SCALAR, sendto, abt->tag, comm, &reqs[0])); 26959566063dSJacob Faibussowitsch PetscCallMPI(MPI_Irecv(recvbuf, recvsiz, MPIU_SCALAR, recvfrom, abt->tag, comm, &reqs[1])); 2696cc48ffa7SToby Isaac } 2697cc48ffa7SToby Isaac 2698cc48ffa7SToby Isaac /* local aseq * sendbuf^T */ 26999566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(ranges[recvisfrom + 1] - ranges[recvisfrom], &cn)); 270050ce3c9cSStefano Zampini if (cm && cn && ck) PetscStackCallBLAS("BLASgemm",BLASgemm_("N","T",&cm,&cn,&ck,&_DOne,av,&alda,sendbuf,&cn,&_DZero,cv + clda * ranges[recvisfrom],&clda)); 2701cc48ffa7SToby Isaac 2702cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2703cc48ffa7SToby Isaac /* wait for the sends and receives to complete, swap sendbuf and recvbuf */ 27049566063dSJacob Faibussowitsch PetscCallMPI(MPI_Waitall(2, reqs, MPI_STATUSES_IGNORE)); 2705cc48ffa7SToby Isaac } 2706cc48ffa7SToby Isaac bn = nextbn; 2707cc48ffa7SToby Isaac recvisfrom = nextrecvisfrom; 2708cc48ffa7SToby Isaac sendbuf = recvbuf; 2709cc48ffa7SToby Isaac } 27109566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A,&av)); 27119566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(b->A,&bv)); 27129566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(c->A,&cv)); 27139566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY)); 27149566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY)); 2715cc48ffa7SToby Isaac PetscFunctionReturn(0); 2716cc48ffa7SToby Isaac } 2717cc48ffa7SToby Isaac 2718faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(Mat A, Mat B, Mat C) 2719faa55883SToby Isaac { 2720faa55883SToby Isaac Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 27216718818eSStefano Zampini Mat_MatTransMultDense *abt; 2722faa55883SToby Isaac MPI_Comm comm; 2723637a0070SStefano Zampini PetscMPIInt size; 2724637a0070SStefano Zampini PetscScalar *cv, *sendbuf, *recvbuf; 2725637a0070SStefano Zampini const PetscScalar *av,*bv; 2726637a0070SStefano Zampini PetscInt blda,i,cK=A->cmap->N,k,j,bn; 2727faa55883SToby Isaac PetscScalar _DOne=1.0,_DZero=0.0; 2728637a0070SStefano Zampini PetscBLASInt cm, cn, ck, alda, clda; 2729faa55883SToby Isaac 2730faa55883SToby Isaac PetscFunctionBegin; 27316718818eSStefano Zampini MatCheckProduct(C,3); 27325f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 27336718818eSStefano Zampini abt = (Mat_MatTransMultDense*)C->product->data; 27349566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A,&comm)); 27359566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 27369566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A,&av)); 27379566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(b->A,&bv)); 27389566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(c->A,&cv)); 27399566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&i)); 27409566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i,&alda)); 27419566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(b->A,&blda)); 27429566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(c->A,&i)); 27439566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i,&clda)); 2744faa55883SToby Isaac /* copy transpose of B into buf[0] */ 2745faa55883SToby Isaac bn = B->rmap->n; 2746faa55883SToby Isaac sendbuf = abt->buf[0]; 2747faa55883SToby Isaac recvbuf = abt->buf[1]; 2748faa55883SToby Isaac for (k = 0, j = 0; j < bn; j++) { 2749faa55883SToby Isaac for (i = 0; i < cK; i++, k++) { 2750637a0070SStefano Zampini sendbuf[k] = bv[i * blda + j]; 2751faa55883SToby Isaac } 2752faa55883SToby Isaac } 27539566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(b->A,&bv)); 27549566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgatherv(sendbuf, bn * cK, MPIU_SCALAR, recvbuf, abt->recvcounts, abt->recvdispls, MPIU_SCALAR, comm)); 27559566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(cK,&ck)); 27569566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(c->A->rmap->n,&cm)); 27579566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(c->A->cmap->n,&cn)); 275850ce3c9cSStefano Zampini if (cm && cn && ck) PetscStackCallBLAS("BLASgemm",BLASgemm_("N","N",&cm,&cn,&ck,&_DOne,av,&alda,recvbuf,&ck,&_DZero,cv,&clda)); 27599566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A,&av)); 27609566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(b->A,&bv)); 27619566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(c->A,&cv)); 27629566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY)); 27639566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY)); 2764faa55883SToby Isaac PetscFunctionReturn(0); 2765faa55883SToby Isaac } 2766faa55883SToby Isaac 2767faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat A, Mat B, Mat C) 2768faa55883SToby Isaac { 27696718818eSStefano Zampini Mat_MatTransMultDense *abt; 2770faa55883SToby Isaac 2771faa55883SToby Isaac PetscFunctionBegin; 27726718818eSStefano Zampini MatCheckProduct(C,3); 27735f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 27746718818eSStefano Zampini abt = (Mat_MatTransMultDense*)C->product->data; 2775faa55883SToby Isaac switch (abt->alg) { 2776faa55883SToby Isaac case 1: 27779566063dSJacob Faibussowitsch PetscCall(MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(A, B, C)); 2778faa55883SToby Isaac break; 2779faa55883SToby Isaac default: 27809566063dSJacob Faibussowitsch PetscCall(MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(A, B, C)); 2781faa55883SToby Isaac break; 2782faa55883SToby Isaac } 2783faa55883SToby Isaac PetscFunctionReturn(0); 2784faa55883SToby Isaac } 2785faa55883SToby Isaac 27866718818eSStefano Zampini PetscErrorCode MatDestroy_MatMatMult_MPIDense_MPIDense(void *data) 2787320f2790SHong Zhang { 27886718818eSStefano Zampini Mat_MatMultDense *ab = (Mat_MatMultDense*)data; 2789320f2790SHong Zhang 2790320f2790SHong Zhang PetscFunctionBegin; 27919566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ab->Ce)); 27929566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ab->Ae)); 27939566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ab->Be)); 27949566063dSJacob Faibussowitsch PetscCall(PetscFree(ab)); 2795320f2790SHong Zhang PetscFunctionReturn(0); 2796320f2790SHong Zhang } 2797320f2790SHong Zhang 27985242a7b1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 2799320f2790SHong Zhang PetscErrorCode MatMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 2800320f2790SHong Zhang { 28016718818eSStefano Zampini Mat_MatMultDense *ab; 2802320f2790SHong Zhang 2803320f2790SHong Zhang PetscFunctionBegin; 28046718818eSStefano Zampini MatCheckProduct(C,3); 28055f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Missing product data"); 28066718818eSStefano Zampini ab = (Mat_MatMultDense*)C->product->data; 28079566063dSJacob Faibussowitsch PetscCall(MatConvert_MPIDense_Elemental(A,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Ae)); 28089566063dSJacob Faibussowitsch PetscCall(MatConvert_MPIDense_Elemental(B,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Be)); 28099566063dSJacob Faibussowitsch PetscCall(MatMatMultNumeric_Elemental(ab->Ae,ab->Be,ab->Ce)); 28109566063dSJacob Faibussowitsch PetscCall(MatConvert(ab->Ce,MATMPIDENSE,MAT_REUSE_MATRIX,&C)); 2811320f2790SHong Zhang PetscFunctionReturn(0); 2812320f2790SHong Zhang } 2813320f2790SHong Zhang 28146718818eSStefano Zampini static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat C) 2815320f2790SHong Zhang { 2816320f2790SHong Zhang Mat Ae,Be,Ce; 2817320f2790SHong Zhang Mat_MatMultDense *ab; 2818320f2790SHong Zhang 2819320f2790SHong Zhang PetscFunctionBegin; 28206718818eSStefano Zampini MatCheckProduct(C,4); 28215f80ce2aSJacob Faibussowitsch PetscCheck(!C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty"); 28224222ddf1SHong Zhang /* check local size of A and B */ 2823320f2790SHong Zhang if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend) { 282498921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != B (%" PetscInt_FMT ",%" PetscInt_FMT ")",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 2825320f2790SHong Zhang } 2826320f2790SHong Zhang 28274222ddf1SHong Zhang /* create elemental matrices Ae and Be */ 28289566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &Ae)); 28299566063dSJacob Faibussowitsch PetscCall(MatSetSizes(Ae,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N)); 28309566063dSJacob Faibussowitsch PetscCall(MatSetType(Ae,MATELEMENTAL)); 28319566063dSJacob Faibussowitsch PetscCall(MatSetUp(Ae)); 28329566063dSJacob Faibussowitsch PetscCall(MatSetOption(Ae,MAT_ROW_ORIENTED,PETSC_FALSE)); 2833320f2790SHong Zhang 28349566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)B), &Be)); 28359566063dSJacob Faibussowitsch PetscCall(MatSetSizes(Be,PETSC_DECIDE,PETSC_DECIDE,B->rmap->N,B->cmap->N)); 28369566063dSJacob Faibussowitsch PetscCall(MatSetType(Be,MATELEMENTAL)); 28379566063dSJacob Faibussowitsch PetscCall(MatSetUp(Be)); 28389566063dSJacob Faibussowitsch PetscCall(MatSetOption(Be,MAT_ROW_ORIENTED,PETSC_FALSE)); 2839320f2790SHong Zhang 28404222ddf1SHong Zhang /* compute symbolic Ce = Ae*Be */ 28419566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)C),&Ce)); 28429566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_Elemental(Ae,Be,fill,Ce)); 28434222ddf1SHong Zhang 28444222ddf1SHong Zhang /* setup C */ 28459566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C,A->rmap->n,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE)); 28469566063dSJacob Faibussowitsch PetscCall(MatSetType(C,MATDENSE)); 28479566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 2848320f2790SHong Zhang 2849320f2790SHong Zhang /* create data structure for reuse Cdense */ 28509566063dSJacob Faibussowitsch PetscCall(PetscNew(&ab)); 2851320f2790SHong Zhang ab->Ae = Ae; 2852320f2790SHong Zhang ab->Be = Be; 2853320f2790SHong Zhang ab->Ce = Ce; 28546718818eSStefano Zampini 28556718818eSStefano Zampini C->product->data = ab; 28566718818eSStefano Zampini C->product->destroy = MatDestroy_MatMatMult_MPIDense_MPIDense; 28574222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIDense; 2858320f2790SHong Zhang PetscFunctionReturn(0); 2859320f2790SHong Zhang } 28604222ddf1SHong Zhang #endif 28614222ddf1SHong Zhang /* ----------------------------------------------- */ 28624222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 28634222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_AB(Mat C) 2864320f2790SHong Zhang { 2865320f2790SHong Zhang PetscFunctionBegin; 28664222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIDense; 28674222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 2868320f2790SHong Zhang PetscFunctionReturn(0); 2869320f2790SHong Zhang } 28705242a7b1SHong Zhang #endif 287186aefd0dSHong Zhang 28724222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_AtB(Mat C) 28734222ddf1SHong Zhang { 28744222ddf1SHong Zhang Mat_Product *product = C->product; 28754222ddf1SHong Zhang Mat A = product->A,B=product->B; 28764222ddf1SHong Zhang 28774222ddf1SHong Zhang PetscFunctionBegin; 28784222ddf1SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) 287998921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 28806718818eSStefano Zampini C->ops->transposematmultsymbolic = MatTransposeMatMultSymbolic_MPIDense_MPIDense; 28816718818eSStefano Zampini C->ops->productsymbolic = MatProductSymbolic_AtB; 28824222ddf1SHong Zhang PetscFunctionReturn(0); 28834222ddf1SHong Zhang } 28844222ddf1SHong Zhang 28854222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_ABt(Mat C) 28864222ddf1SHong Zhang { 28874222ddf1SHong Zhang Mat_Product *product = C->product; 28884222ddf1SHong Zhang const char *algTypes[2] = {"allgatherv","cyclic"}; 28894222ddf1SHong Zhang PetscInt alg,nalg = 2; 28904222ddf1SHong Zhang PetscBool flg = PETSC_FALSE; 28914222ddf1SHong Zhang 28924222ddf1SHong Zhang PetscFunctionBegin; 28934222ddf1SHong Zhang /* Set default algorithm */ 28944222ddf1SHong Zhang alg = 0; /* default is allgatherv */ 28959566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg,"default",&flg)); 28964222ddf1SHong Zhang if (flg) { 28979566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg])); 28984222ddf1SHong Zhang } 28994222ddf1SHong Zhang 29004222ddf1SHong Zhang /* Get runtime option */ 29014222ddf1SHong Zhang if (product->api_user) { 2902d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatMatTransposeMult","Mat"); 29039566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-matmattransmult_mpidense_mpidense_via","Algorithmic approach","MatMatTransposeMult",algTypes,nalg,algTypes[alg],&alg,&flg)); 2904d0609cedSBarry Smith PetscOptionsEnd(); 29054222ddf1SHong Zhang } else { 2906d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatProduct_ABt","Mat"); 29079566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm","Algorithmic approach","MatProduct_ABt",algTypes,nalg,algTypes[alg],&alg,&flg)); 2908d0609cedSBarry Smith PetscOptionsEnd(); 29094222ddf1SHong Zhang } 29104222ddf1SHong Zhang if (flg) { 29119566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg])); 29124222ddf1SHong Zhang } 29134222ddf1SHong Zhang 29144222ddf1SHong Zhang C->ops->mattransposemultsymbolic = MatMatTransposeMultSymbolic_MPIDense_MPIDense; 29154222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_ABt; 29164222ddf1SHong Zhang PetscFunctionReturn(0); 29174222ddf1SHong Zhang } 29184222ddf1SHong Zhang 29194222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense(Mat C) 29204222ddf1SHong Zhang { 29214222ddf1SHong Zhang Mat_Product *product = C->product; 29224222ddf1SHong Zhang 29234222ddf1SHong Zhang PetscFunctionBegin; 29244222ddf1SHong Zhang switch (product->type) { 29254222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 29264222ddf1SHong Zhang case MATPRODUCT_AB: 29279566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIDense_AB(C)); 29284222ddf1SHong Zhang break; 29294222ddf1SHong Zhang #endif 29304222ddf1SHong Zhang case MATPRODUCT_AtB: 29319566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIDense_AtB(C)); 29324222ddf1SHong Zhang break; 29334222ddf1SHong Zhang case MATPRODUCT_ABt: 29349566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIDense_ABt(C)); 29354222ddf1SHong Zhang break; 29366718818eSStefano Zampini default: 29376718818eSStefano Zampini break; 29384222ddf1SHong Zhang } 29394222ddf1SHong Zhang PetscFunctionReturn(0); 29404222ddf1SHong Zhang } 2941