1be1d678aSKris Buschelman 2ed3cc1f0SBarry Smith /* 3ed3cc1f0SBarry Smith Basic functions for basic parallel dense matrices. 447d993e7Ssuyashtn Portions of this code are under: 547d993e7Ssuyashtn Copyright (c) 2022 Advanced Micro Devices, Inc. All rights reserved. 6ed3cc1f0SBarry Smith */ 7ed3cc1f0SBarry Smith 8c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h> /*I "petscmat.h" I*/ 98949adfdSHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 10baa3c1c6SHong Zhang #include <petscblaslapack.h> 118965ea79SLois Curfman McInnes 12ab92ecdeSBarry Smith /*@ 1311a5261eSBarry Smith MatDenseGetLocalMatrix - For a `MATMPIDENSE` or `MATSEQDENSE` matrix returns the sequential 14ab92ecdeSBarry Smith matrix that represents the operator. For sequential matrices it returns itself. 15ab92ecdeSBarry Smith 16ab92ecdeSBarry Smith Input Parameter: 172ef1f0ffSBarry Smith . A - the sequential or MPI `MATDENSE` matrix 18ab92ecdeSBarry Smith 19ab92ecdeSBarry Smith Output Parameter: 20ab92ecdeSBarry Smith . B - the inner matrix 21ab92ecdeSBarry Smith 228e6c10adSSatish Balay Level: intermediate 238e6c10adSSatish Balay 241cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MATMPIDENSE`, `MATSEQDENSE` 25ab92ecdeSBarry Smith @*/ 26d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetLocalMatrix(Mat A, Mat *B) 27d71ae5a4SJacob Faibussowitsch { 28ab92ecdeSBarry Smith Mat_MPIDense *mat = (Mat_MPIDense *)A->data; 29ace3abfcSBarry Smith PetscBool flg; 30ab92ecdeSBarry Smith 31ab92ecdeSBarry Smith PetscFunctionBegin; 32d5ea218eSStefano Zampini PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 33d5ea218eSStefano Zampini PetscValidPointer(B, 2); 349566063dSJacob Faibussowitsch PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIDENSE, &flg)); 352205254eSKarl Rupp if (flg) *B = mat->A; 36f140bc17SStefano Zampini else { 379566063dSJacob Faibussowitsch PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATSEQDENSE, &flg)); 3828b400f6SJacob Faibussowitsch PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not for matrix type %s", ((PetscObject)A)->type_name); 39f140bc17SStefano Zampini *B = A; 40f140bc17SStefano Zampini } 413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42ab92ecdeSBarry Smith } 43ab92ecdeSBarry Smith 44d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCopy_MPIDense(Mat A, Mat B, MatStructure s) 45d71ae5a4SJacob Faibussowitsch { 46a76f77c3SStefano Zampini Mat_MPIDense *Amat = (Mat_MPIDense *)A->data; 47a76f77c3SStefano Zampini Mat_MPIDense *Bmat = (Mat_MPIDense *)B->data; 48a76f77c3SStefano Zampini 49a76f77c3SStefano Zampini PetscFunctionBegin; 509566063dSJacob Faibussowitsch PetscCall(MatCopy(Amat->A, Bmat->A, s)); 513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 52a76f77c3SStefano Zampini } 53a76f77c3SStefano Zampini 54d71ae5a4SJacob Faibussowitsch PetscErrorCode MatShift_MPIDense(Mat A, PetscScalar alpha) 55d71ae5a4SJacob Faibussowitsch { 562f605a99SJose E. Roman Mat_MPIDense *mat = (Mat_MPIDense *)A->data; 572f605a99SJose E. Roman PetscInt j, lda, rstart = A->rmap->rstart, rend = A->rmap->rend, rend2; 582f605a99SJose E. Roman PetscScalar *v; 592f605a99SJose E. Roman 602f605a99SJose E. Roman PetscFunctionBegin; 612f605a99SJose E. Roman PetscCall(MatDenseGetArray(mat->A, &v)); 622f605a99SJose E. Roman PetscCall(MatDenseGetLDA(mat->A, &lda)); 632f605a99SJose E. Roman rend2 = PetscMin(rend, A->cmap->N); 642f605a99SJose E. Roman if (rend2 > rstart) { 652f605a99SJose E. Roman for (j = rstart; j < rend2; j++) v[j - rstart + j * lda] += alpha; 662f605a99SJose E. Roman PetscCall(PetscLogFlops(rend2 - rstart)); 672f605a99SJose E. Roman } 682f605a99SJose E. Roman PetscCall(MatDenseRestoreArray(mat->A, &v)); 693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 702f605a99SJose E. Roman } 712f605a99SJose E. Roman 72d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIDense(Mat A, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 73d71ae5a4SJacob Faibussowitsch { 74ba8c8a56SBarry Smith Mat_MPIDense *mat = (Mat_MPIDense *)A->data; 75d0f46423SBarry Smith PetscInt lrow, rstart = A->rmap->rstart, rend = A->rmap->rend; 76ba8c8a56SBarry Smith 77ba8c8a56SBarry Smith PetscFunctionBegin; 78aed4548fSBarry Smith PetscCheck(row >= rstart && row < rend, PETSC_COMM_SELF, PETSC_ERR_SUP, "only local rows"); 79ba8c8a56SBarry Smith lrow = row - rstart; 809566063dSJacob Faibussowitsch PetscCall(MatGetRow(mat->A, lrow, nz, (const PetscInt **)idx, (const PetscScalar **)v)); 813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 82ba8c8a56SBarry Smith } 83ba8c8a56SBarry Smith 84d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIDense(Mat A, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 85d71ae5a4SJacob Faibussowitsch { 86637a0070SStefano Zampini Mat_MPIDense *mat = (Mat_MPIDense *)A->data; 87637a0070SStefano Zampini PetscInt lrow, rstart = A->rmap->rstart, rend = A->rmap->rend; 88ba8c8a56SBarry Smith 89ba8c8a56SBarry Smith PetscFunctionBegin; 90aed4548fSBarry Smith PetscCheck(row >= rstart && row < rend, PETSC_COMM_SELF, PETSC_ERR_SUP, "only local rows"); 91637a0070SStefano Zampini lrow = row - rstart; 929566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(mat->A, lrow, nz, (const PetscInt **)idx, (const PetscScalar **)v)); 933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 94ba8c8a56SBarry Smith } 95ba8c8a56SBarry Smith 96d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetDiagonalBlock_MPIDense(Mat A, Mat *a) 97d71ae5a4SJacob Faibussowitsch { 980de54da6SSatish Balay Mat_MPIDense *mdn = (Mat_MPIDense *)A->data; 99d0f46423SBarry Smith PetscInt m = A->rmap->n, rstart = A->rmap->rstart; 10087828ca2SBarry Smith PetscScalar *array; 1010de54da6SSatish Balay MPI_Comm comm; 1024b6ae80fSStefano Zampini PetscBool flg; 10311bd1e4dSLisandro Dalcin Mat B; 1040de54da6SSatish Balay 1050de54da6SSatish Balay PetscFunctionBegin; 1069566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &flg)); 10728b400f6SJacob Faibussowitsch PetscCheck(flg, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only square matrices supported."); 1089566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)A, "DiagonalBlock", (PetscObject *)&B)); 109616b8fbbSStefano Zampini if (!B) { /* This should use MatDenseGetSubMatrix (not create), but we would need a call like MatRestoreDiagonalBlock */ 110a51cd166SPierre Jolivet #if PetscDefined(HAVE_CUDA) 1119566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)mdn->A, MATSEQDENSECUDA, &flg)); 11228b400f6SJacob Faibussowitsch PetscCheck(!flg, PETSC_COMM_SELF, PETSC_ERR_SUP, "Not coded for %s. Send an email to petsc-dev@mcs.anl.gov to request this feature", MATSEQDENSECUDA); 113a51cd166SPierre Jolivet #elif PetscDefined(HAVE_HIP) 11447d993e7Ssuyashtn PetscCall(PetscObjectTypeCompare((PetscObject)mdn->A, MATSEQDENSEHIP, &flg)); 11547d993e7Ssuyashtn PetscCheck(!flg, PETSC_COMM_SELF, PETSC_ERR_SUP, "Not coded for %s. Send an email to petsc-dev@mcs.anl.gov to request this feature", MATSEQDENSEHIP); 11647d993e7Ssuyashtn #endif 1179566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)(mdn->A), &comm)); 1189566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &B)); 1199566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, m, m, m, m)); 1209566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)mdn->A)->type_name)); 1219566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(mdn->A, (const PetscScalar **)&array)); 1229566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(B, array + m * rstart)); 1239566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(mdn->A, (const PetscScalar **)&array)); 1249566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)A, "DiagonalBlock", (PetscObject)B)); 12511bd1e4dSLisandro Dalcin *a = B; 1269566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 1272205254eSKarl Rupp } else *a = B; 1283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1290de54da6SSatish Balay } 1300de54da6SSatish Balay 131d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIDense(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], const PetscScalar v[], InsertMode addv) 132d71ae5a4SJacob Faibussowitsch { 13339b7565bSBarry Smith Mat_MPIDense *A = (Mat_MPIDense *)mat->data; 134d0f46423SBarry Smith PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend, row; 135ace3abfcSBarry Smith PetscBool roworiented = A->roworiented; 1368965ea79SLois Curfman McInnes 1373a40ed3dSBarry Smith PetscFunctionBegin; 1388965ea79SLois Curfman McInnes for (i = 0; i < m; i++) { 1395ef9f2a5SBarry Smith if (idxm[i] < 0) continue; 14008401ef6SPierre Jolivet PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large"); 1418965ea79SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 1428965ea79SLois Curfman McInnes row = idxm[i] - rstart; 14339b7565bSBarry Smith if (roworiented) { 1449566063dSJacob Faibussowitsch PetscCall(MatSetValues(A->A, 1, &row, n, idxn, v + i * n, addv)); 1453a40ed3dSBarry Smith } else { 1468965ea79SLois Curfman McInnes for (j = 0; j < n; j++) { 1475ef9f2a5SBarry Smith if (idxn[j] < 0) continue; 14808401ef6SPierre Jolivet PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large"); 1499566063dSJacob Faibussowitsch PetscCall(MatSetValues(A->A, 1, &row, 1, &idxn[j], v + i + j * m, addv)); 15039b7565bSBarry Smith } 1518965ea79SLois Curfman McInnes } 1522205254eSKarl Rupp } else if (!A->donotstash) { 1535080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 15439b7565bSBarry Smith if (roworiented) { 1559566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, idxm[i], n, idxn, v + i * n, PETSC_FALSE)); 156d36fbae8SSatish Balay } else { 1579566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, idxm[i], n, idxn, v + i, m, PETSC_FALSE)); 15839b7565bSBarry Smith } 159b49de8d1SLois Curfman McInnes } 160b49de8d1SLois Curfman McInnes } 1613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 162b49de8d1SLois Curfman McInnes } 163b49de8d1SLois Curfman McInnes 164d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetValues_MPIDense(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 165d71ae5a4SJacob Faibussowitsch { 166b49de8d1SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 167d0f46423SBarry Smith PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend, row; 168b49de8d1SLois Curfman McInnes 1693a40ed3dSBarry Smith PetscFunctionBegin; 170b49de8d1SLois Curfman McInnes for (i = 0; i < m; i++) { 17154c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 17254c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large"); 173b49de8d1SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 174b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 175b49de8d1SLois Curfman McInnes for (j = 0; j < n; j++) { 17654c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 17754c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large"); 1789566063dSJacob Faibussowitsch PetscCall(MatGetValues(mdn->A, 1, &row, 1, &idxn[j], v + i * n + j)); 179b49de8d1SLois Curfman McInnes } 180e7e72b3dSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported"); 1818965ea79SLois Curfman McInnes } 1823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1838965ea79SLois Curfman McInnes } 1848965ea79SLois Curfman McInnes 185d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseGetLDA_MPIDense(Mat A, PetscInt *lda) 186d71ae5a4SJacob Faibussowitsch { 18749a6ff4bSBarry Smith Mat_MPIDense *a = (Mat_MPIDense *)A->data; 18849a6ff4bSBarry Smith 18949a6ff4bSBarry Smith PetscFunctionBegin; 1909566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, lda)); 1913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 19249a6ff4bSBarry Smith } 19349a6ff4bSBarry Smith 194d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseSetLDA_MPIDense(Mat A, PetscInt lda) 195d71ae5a4SJacob Faibussowitsch { 196ad16ce7aSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 19747d993e7Ssuyashtn MatType mtype = MATSEQDENSE; 198ad16ce7aSStefano Zampini 199ad16ce7aSStefano Zampini PetscFunctionBegin; 20017359960SJose E. Roman if (!a->A) { 20128b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 2029566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->rmap)); 2039566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->cmap)); 2049566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &a->A)); 2059566063dSJacob Faibussowitsch PetscCall(MatSetSizes(a->A, A->rmap->n, A->cmap->N, A->rmap->n, A->cmap->N)); 206a51cd166SPierre Jolivet #if PetscDefined(HAVE_CUDA) 20747d993e7Ssuyashtn PetscBool iscuda; 2089566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIDENSECUDA, &iscuda)); 20947d993e7Ssuyashtn if (iscuda) mtype = MATSEQDENSECUDA; 210a51cd166SPierre Jolivet #elif PetscDefined(HAVE_HIP) 21147d993e7Ssuyashtn PetscBool iship; 21247d993e7Ssuyashtn PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIDENSEHIP, &iship)); 21347d993e7Ssuyashtn if (iship) mtype = MATSEQDENSEHIP; 21447d993e7Ssuyashtn #endif 21547d993e7Ssuyashtn PetscCall(MatSetType(a->A, mtype)); 21617359960SJose E. Roman } 2179566063dSJacob Faibussowitsch PetscCall(MatDenseSetLDA(a->A, lda)); 2183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 219ad16ce7aSStefano Zampini } 220ad16ce7aSStefano Zampini 221d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseGetArray_MPIDense(Mat A, PetscScalar **array) 222d71ae5a4SJacob Faibussowitsch { 223ff14e315SSatish Balay Mat_MPIDense *a = (Mat_MPIDense *)A->data; 224ff14e315SSatish Balay 2253a40ed3dSBarry Smith PetscFunctionBegin; 22628b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 2279566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(a->A, array)); 2283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 229ff14e315SSatish Balay } 230ff14e315SSatish Balay 231d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseGetArrayRead_MPIDense(Mat A, const PetscScalar **array) 232d71ae5a4SJacob Faibussowitsch { 2338572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense *)A->data; 2348572280aSBarry Smith 2358572280aSBarry Smith PetscFunctionBegin; 23628b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 2379566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A, array)); 2383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2398572280aSBarry Smith } 2408572280aSBarry Smith 241d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseGetArrayWrite_MPIDense(Mat A, PetscScalar **array) 242d71ae5a4SJacob Faibussowitsch { 2436947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 2446947451fSStefano Zampini 2456947451fSStefano Zampini PetscFunctionBegin; 24628b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 2479566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(a->A, array)); 2483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2496947451fSStefano Zampini } 2506947451fSStefano Zampini 251d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDensePlaceArray_MPIDense(Mat A, const PetscScalar *array) 252d71ae5a4SJacob Faibussowitsch { 253d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense *)A->data; 254d3042a70SBarry Smith 255d3042a70SBarry Smith PetscFunctionBegin; 25628b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 25728b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 2589566063dSJacob Faibussowitsch PetscCall(MatDensePlaceArray(a->A, array)); 2593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 260d3042a70SBarry Smith } 261d3042a70SBarry Smith 262d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseResetArray_MPIDense(Mat A) 263d71ae5a4SJacob Faibussowitsch { 264d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense *)A->data; 265d3042a70SBarry Smith 266d3042a70SBarry Smith PetscFunctionBegin; 26728b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 26828b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 2699566063dSJacob Faibussowitsch PetscCall(MatDenseResetArray(a->A)); 2703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 271d3042a70SBarry Smith } 272d3042a70SBarry Smith 273d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseReplaceArray_MPIDense(Mat A, const PetscScalar *array) 274d71ae5a4SJacob Faibussowitsch { 275d5ea218eSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 276d5ea218eSStefano Zampini 277d5ea218eSStefano Zampini PetscFunctionBegin; 27828b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 27928b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 2809566063dSJacob Faibussowitsch PetscCall(MatDenseReplaceArray(a->A, array)); 2813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 282d5ea218eSStefano Zampini } 283d5ea218eSStefano Zampini 284d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrix_MPIDense(Mat A, IS isrow, IS iscol, MatReuse scall, Mat *B) 285d71ae5a4SJacob Faibussowitsch { 286ca3fa75bSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense *)A->data, *newmatd; 287637a0070SStefano Zampini PetscInt lda, i, j, rstart, rend, nrows, ncols, Ncols, nlrows, nlcols; 2885d0c19d7SBarry Smith const PetscInt *irow, *icol; 289637a0070SStefano Zampini const PetscScalar *v; 290637a0070SStefano Zampini PetscScalar *bv; 291ca3fa75bSLois Curfman McInnes Mat newmat; 2924aa3045dSJed Brown IS iscol_local; 29342a884f0SBarry Smith MPI_Comm comm_is, comm_mat; 294ca3fa75bSLois Curfman McInnes 295ca3fa75bSLois Curfman McInnes PetscFunctionBegin; 2969566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm_mat)); 2979566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)iscol, &comm_is)); 29808401ef6SPierre Jolivet PetscCheck(comm_mat == comm_is, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "IS communicator must match matrix communicator"); 29942a884f0SBarry Smith 3009566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol, &iscol_local)); 3019566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isrow, &irow)); 3029566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_local, &icol)); 3039566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &nrows)); 3049566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &ncols)); 3059566063dSJacob Faibussowitsch PetscCall(ISGetSize(iscol, &Ncols)); /* global number of columns, size of iscol_local */ 306ca3fa75bSLois Curfman McInnes 307ca3fa75bSLois Curfman McInnes /* No parallel redistribution currently supported! Should really check each index set 308da81f932SPierre Jolivet to confirm that it is OK. ... Currently supports only submatrix same partitioning as 3097eba5e9cSLois Curfman McInnes original matrix! */ 310ca3fa75bSLois Curfman McInnes 3119566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, &nlrows, &nlcols)); 3129566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, &rend)); 313ca3fa75bSLois Curfman McInnes 314ca3fa75bSLois Curfman McInnes /* Check submatrix call */ 315ca3fa75bSLois Curfman McInnes if (scall == MAT_REUSE_MATRIX) { 316e32f2f54SBarry Smith /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */ 3177eba5e9cSLois Curfman McInnes /* Really need to test rows and column sizes! */ 318ca3fa75bSLois Curfman McInnes newmat = *B; 319ca3fa75bSLois Curfman McInnes } else { 320ca3fa75bSLois Curfman McInnes /* Create and fill new matrix */ 3219566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &newmat)); 3229566063dSJacob Faibussowitsch PetscCall(MatSetSizes(newmat, nrows, ncols, PETSC_DECIDE, Ncols)); 3239566063dSJacob Faibussowitsch PetscCall(MatSetType(newmat, ((PetscObject)A)->type_name)); 3249566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(newmat, NULL)); 325ca3fa75bSLois Curfman McInnes } 326ca3fa75bSLois Curfman McInnes 327ca3fa75bSLois Curfman McInnes /* Now extract the data pointers and do the copy, column at a time */ 328ca3fa75bSLois Curfman McInnes newmatd = (Mat_MPIDense *)newmat->data; 3299566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(newmatd->A, &bv)); 3309566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(mat->A, &v)); 3319566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(mat->A, &lda)); 3324aa3045dSJed Brown for (i = 0; i < Ncols; i++) { 333637a0070SStefano Zampini const PetscScalar *av = v + lda * icol[i]; 334ad540459SPierre Jolivet for (j = 0; j < nrows; j++) *bv++ = av[irow[j] - rstart]; 335ca3fa75bSLois Curfman McInnes } 3369566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(mat->A, &v)); 3379566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(newmatd->A, &bv)); 338ca3fa75bSLois Curfman McInnes 339ca3fa75bSLois Curfman McInnes /* Assemble the matrices so that the correct flags are set */ 3409566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(newmat, MAT_FINAL_ASSEMBLY)); 3419566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(newmat, MAT_FINAL_ASSEMBLY)); 342ca3fa75bSLois Curfman McInnes 343ca3fa75bSLois Curfman McInnes /* Free work space */ 3449566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isrow, &irow)); 3459566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_local, &icol)); 3469566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 347ca3fa75bSLois Curfman McInnes *B = newmat; 3483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 349ca3fa75bSLois Curfman McInnes } 350ca3fa75bSLois Curfman McInnes 351d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreArray_MPIDense(Mat A, PetscScalar **array) 352d71ae5a4SJacob Faibussowitsch { 35373a71a0fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense *)A->data; 35473a71a0fSBarry Smith 3553a40ed3dSBarry Smith PetscFunctionBegin; 3569566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(a->A, array)); 3573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 358ff14e315SSatish Balay } 359ff14e315SSatish Balay 360d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreArrayRead_MPIDense(Mat A, const PetscScalar **array) 361d71ae5a4SJacob Faibussowitsch { 3628572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense *)A->data; 3638572280aSBarry Smith 3648572280aSBarry Smith PetscFunctionBegin; 3659566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A, array)); 3663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3678572280aSBarry Smith } 3688572280aSBarry Smith 369d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreArrayWrite_MPIDense(Mat A, PetscScalar **array) 370d71ae5a4SJacob Faibussowitsch { 3716947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 3726947451fSStefano Zampini 3736947451fSStefano Zampini PetscFunctionBegin; 3749566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(a->A, array)); 3753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3766947451fSStefano Zampini } 3776947451fSStefano Zampini 378d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat, MatAssemblyType mode) 379d71ae5a4SJacob Faibussowitsch { 38039ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 38113f74950SBarry Smith PetscInt nstash, reallocs; 3828965ea79SLois Curfman McInnes 3833a40ed3dSBarry Smith PetscFunctionBegin; 3843ba16761SJacob Faibussowitsch if (mdn->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS); 3858965ea79SLois Curfman McInnes 3869566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 3879566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 3889566063dSJacob Faibussowitsch PetscCall(PetscInfo(mdn->A, "Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 3893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3908965ea79SLois Curfman McInnes } 3918965ea79SLois Curfman McInnes 392d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat, MatAssemblyType mode) 393d71ae5a4SJacob Faibussowitsch { 39439ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 39513f74950SBarry Smith PetscInt i, *row, *col, flg, j, rstart, ncols; 39613f74950SBarry Smith PetscMPIInt n; 39787828ca2SBarry Smith PetscScalar *val; 3988965ea79SLois Curfman McInnes 3993a40ed3dSBarry Smith PetscFunctionBegin; 400910cf402Sprj- if (!mdn->donotstash && !mat->nooffprocentries) { 4018965ea79SLois Curfman McInnes /* wait on receives */ 4027ef1d9bdSSatish Balay while (1) { 4039566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 4047ef1d9bdSSatish Balay if (!flg) break; 4058965ea79SLois Curfman McInnes 4067ef1d9bdSSatish Balay for (i = 0; i < n;) { 4077ef1d9bdSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 4082205254eSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 4092205254eSKarl Rupp if (row[j] != rstart) break; 4102205254eSKarl Rupp } 4117ef1d9bdSSatish Balay if (j < n) ncols = j - i; 4127ef1d9bdSSatish Balay else ncols = n - i; 4137ef1d9bdSSatish Balay /* Now assemble all these values with a single function call */ 4149566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIDense(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode)); 4157ef1d9bdSSatish Balay i = j; 4168965ea79SLois Curfman McInnes } 4177ef1d9bdSSatish Balay } 4189566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 419910cf402Sprj- } 4208965ea79SLois Curfman McInnes 4219566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mdn->A, mode)); 4229566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mdn->A, mode)); 4233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4248965ea79SLois Curfman McInnes } 4258965ea79SLois Curfman McInnes 426d71ae5a4SJacob Faibussowitsch PetscErrorCode MatZeroEntries_MPIDense(Mat A) 427d71ae5a4SJacob Faibussowitsch { 42839ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense *)A->data; 4293a40ed3dSBarry Smith 4303a40ed3dSBarry Smith PetscFunctionBegin; 4319566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 4323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4338965ea79SLois Curfman McInnes } 4348965ea79SLois Curfman McInnes 435d71ae5a4SJacob Faibussowitsch PetscErrorCode MatZeroRows_MPIDense(Mat A, PetscInt n, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 436d71ae5a4SJacob Faibussowitsch { 43739ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense *)A->data; 438637a0070SStefano Zampini PetscInt i, len, *lrows; 439637a0070SStefano Zampini 440637a0070SStefano Zampini PetscFunctionBegin; 441637a0070SStefano Zampini /* get locally owned rows */ 4429566063dSJacob Faibussowitsch PetscCall(PetscLayoutMapLocal(A->rmap, n, rows, &len, &lrows, NULL)); 443637a0070SStefano Zampini /* fix right hand side if needed */ 444637a0070SStefano Zampini if (x && b) { 44597b48c8fSBarry Smith const PetscScalar *xx; 44697b48c8fSBarry Smith PetscScalar *bb; 4478965ea79SLois Curfman McInnes 4489566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 4499566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(b, &bb)); 450637a0070SStefano Zampini for (i = 0; i < len; ++i) bb[lrows[i]] = diag * xx[lrows[i]]; 4519566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 4529566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(b, &bb)); 45397b48c8fSBarry Smith } 4549566063dSJacob Faibussowitsch PetscCall(MatZeroRows(l->A, len, lrows, 0.0, NULL, NULL)); 455e2eb51b1SBarry Smith if (diag != 0.0) { 456637a0070SStefano Zampini Vec d; 457b9679d65SBarry Smith 4589566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(A, NULL, &d)); 4599566063dSJacob Faibussowitsch PetscCall(VecSet(d, diag)); 4609566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet(A, d, INSERT_VALUES)); 4619566063dSJacob Faibussowitsch PetscCall(VecDestroy(&d)); 462b9679d65SBarry Smith } 4639566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 4643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4658965ea79SLois Curfman McInnes } 4668965ea79SLois Curfman McInnes 467cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMult_SeqDense(Mat, Vec, Vec); 468cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultAdd_SeqDense(Mat, Vec, Vec, Vec); 469cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTranspose_SeqDense(Mat, Vec, Vec); 470cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTransposeAdd_SeqDense(Mat, Vec, Vec, Vec); 471cc2e6a90SBarry Smith 472d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMult_MPIDense(Mat mat, Vec xx, Vec yy) 473d71ae5a4SJacob Faibussowitsch { 47439ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 475637a0070SStefano Zampini const PetscScalar *ax; 476637a0070SStefano Zampini PetscScalar *ay; 477d0295fc0SJunchao Zhang PetscMemType axmtype, aymtype; 478c456f294SBarry Smith 4793a40ed3dSBarry Smith PetscFunctionBegin; 4806f08ad05SPierre Jolivet if (!mdn->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(mat)); 4819566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(xx, &ax, &axmtype)); 4829566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(mdn->lvec, &ay, &aymtype)); 4839566063dSJacob Faibussowitsch PetscCall(PetscSFBcastWithMemTypeBegin(mdn->Mvctx, MPIU_SCALAR, axmtype, ax, aymtype, ay, MPI_REPLACE)); 4849566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(mdn->Mvctx, MPIU_SCALAR, ax, ay, MPI_REPLACE)); 4859566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(mdn->lvec, &ay)); 4869566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(xx, &ax)); 4879566063dSJacob Faibussowitsch PetscCall((*mdn->A->ops->mult)(mdn->A, mdn->lvec, yy)); 4883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4898965ea79SLois Curfman McInnes } 4908965ea79SLois Curfman McInnes 491d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultAdd_MPIDense(Mat mat, Vec xx, Vec yy, Vec zz) 492d71ae5a4SJacob Faibussowitsch { 49339ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 494637a0070SStefano Zampini const PetscScalar *ax; 495637a0070SStefano Zampini PetscScalar *ay; 496d0295fc0SJunchao Zhang PetscMemType axmtype, aymtype; 497c456f294SBarry Smith 4983a40ed3dSBarry Smith PetscFunctionBegin; 4996f08ad05SPierre Jolivet if (!mdn->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(mat)); 5009566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(xx, &ax, &axmtype)); 5019566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(mdn->lvec, &ay, &aymtype)); 5029566063dSJacob Faibussowitsch PetscCall(PetscSFBcastWithMemTypeBegin(mdn->Mvctx, MPIU_SCALAR, axmtype, ax, aymtype, ay, MPI_REPLACE)); 5039566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(mdn->Mvctx, MPIU_SCALAR, ax, ay, MPI_REPLACE)); 5049566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(mdn->lvec, &ay)); 5059566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(xx, &ax)); 5069566063dSJacob Faibussowitsch PetscCall((*mdn->A->ops->multadd)(mdn->A, mdn->lvec, yy, zz)); 5073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5088965ea79SLois Curfman McInnes } 5098965ea79SLois Curfman McInnes 510d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultTranspose_MPIDense(Mat A, Vec xx, Vec yy) 511d71ae5a4SJacob Faibussowitsch { 512096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense *)A->data; 513637a0070SStefano Zampini const PetscScalar *ax; 514637a0070SStefano Zampini PetscScalar *ay; 515d0295fc0SJunchao Zhang PetscMemType axmtype, aymtype; 516096963f5SLois Curfman McInnes 5173a40ed3dSBarry Smith PetscFunctionBegin; 5186f08ad05SPierre Jolivet if (!a->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); 5199566063dSJacob Faibussowitsch PetscCall(VecSet(yy, 0.0)); 5209566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A, xx, a->lvec)); 5219566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(a->lvec, &ax, &axmtype)); 5229566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(yy, &ay, &aymtype)); 5239566063dSJacob Faibussowitsch PetscCall(PetscSFReduceWithMemTypeBegin(a->Mvctx, MPIU_SCALAR, axmtype, ax, aymtype, ay, MPIU_SUM)); 5249566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(a->Mvctx, MPIU_SCALAR, ax, ay, MPIU_SUM)); 5259566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(a->lvec, &ax)); 5269566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(yy, &ay)); 5273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 528096963f5SLois Curfman McInnes } 529096963f5SLois Curfman McInnes 530d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A, Vec xx, Vec yy, Vec zz) 531d71ae5a4SJacob Faibussowitsch { 532096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense *)A->data; 533637a0070SStefano Zampini const PetscScalar *ax; 534637a0070SStefano Zampini PetscScalar *ay; 535d0295fc0SJunchao Zhang PetscMemType axmtype, aymtype; 536096963f5SLois Curfman McInnes 5373a40ed3dSBarry Smith PetscFunctionBegin; 5386f08ad05SPierre Jolivet if (!a->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); 5399566063dSJacob Faibussowitsch PetscCall(VecCopy(yy, zz)); 5409566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A, xx, a->lvec)); 5419566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(a->lvec, &ax, &axmtype)); 5429566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(zz, &ay, &aymtype)); 5439566063dSJacob Faibussowitsch PetscCall(PetscSFReduceWithMemTypeBegin(a->Mvctx, MPIU_SCALAR, axmtype, ax, aymtype, ay, MPIU_SUM)); 5449566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(a->Mvctx, MPIU_SCALAR, ax, ay, MPIU_SUM)); 5459566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(a->lvec, &ax)); 5469566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(zz, &ay)); 5473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 548096963f5SLois Curfman McInnes } 549096963f5SLois Curfman McInnes 550d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetDiagonal_MPIDense(Mat A, Vec v) 551d71ae5a4SJacob Faibussowitsch { 55239ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense *)A->data; 553*79560b15SJacob Faibussowitsch PetscInt lda, len, i, nl, ng, m = A->rmap->n, radd; 554*79560b15SJacob Faibussowitsch PetscScalar *x; 555637a0070SStefano Zampini const PetscScalar *av; 556ed3cc1f0SBarry Smith 5573a40ed3dSBarry Smith PetscFunctionBegin; 5589566063dSJacob Faibussowitsch PetscCall(VecGetArray(v, &x)); 559*79560b15SJacob Faibussowitsch PetscCall(VecGetSize(v, &ng)); 560*79560b15SJacob Faibussowitsch PetscCheck(ng == A->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Nonconforming mat and vec"); 561*79560b15SJacob Faibussowitsch PetscCall(VecGetLocalSize(v, &nl)); 562d0f46423SBarry Smith len = PetscMin(a->A->rmap->n, a->A->cmap->n); 563d0f46423SBarry Smith radd = A->rmap->rstart * m; 5649566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A, &av)); 5659566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &lda)); 566ad540459SPierre Jolivet for (i = 0; i < len; i++) x[i] = av[radd + i * lda + i]; 5679566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A, &av)); 568*79560b15SJacob Faibussowitsch PetscCall(PetscArrayzero(x + i, nl - i)); 5699566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v, &x)); 5703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5718965ea79SLois Curfman McInnes } 5728965ea79SLois Curfman McInnes 573d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDestroy_MPIDense(Mat mat) 574d71ae5a4SJacob Faibussowitsch { 5753501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 576ed3cc1f0SBarry Smith 5773a40ed3dSBarry Smith PetscFunctionBegin; 578aa482453SBarry Smith #if defined(PETSC_USE_LOG) 5793ba16761SJacob Faibussowitsch PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N)); 5808965ea79SLois Curfman McInnes #endif 5819566063dSJacob Faibussowitsch PetscCall(MatStashDestroy_Private(&mat->stash)); 58228b400f6SJacob Faibussowitsch PetscCheck(!mdn->vecinuse, PetscObjectComm((PetscObject)mat), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 58328b400f6SJacob Faibussowitsch PetscCheck(!mdn->matinuse, PetscObjectComm((PetscObject)mat), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 5849566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mdn->A)); 5859566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mdn->lvec)); 5869566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&mdn->Mvctx)); 5879566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mdn->cvec)); 5889566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mdn->cmat)); 58901b82886SBarry Smith 5909566063dSJacob Faibussowitsch PetscCall(PetscFree(mat->data)); 5919566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 5928baccfbdSHong Zhang 5939566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetLDA_C", NULL)); 5949566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseSetLDA_C", NULL)); 5959566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetArray_C", NULL)); 5969566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreArray_C", NULL)); 5979566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetArrayRead_C", NULL)); 5989566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreArrayRead_C", NULL)); 5999566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetArrayWrite_C", NULL)); 6009566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreArrayWrite_C", NULL)); 6019566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDensePlaceArray_C", NULL)); 6029566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseResetArray_C", NULL)); 6039566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseReplaceArray_C", NULL)); 6049566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpidense_C", NULL)); 6059566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_mpiaij_C", NULL)); 6068baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 6079566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_elemental_C", NULL)); 6088baccfbdSHong Zhang #endif 609d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 6109566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_scalapack_C", NULL)); 611d24d4204SJose E. Roman #endif 6129566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIDenseSetPreallocation_C", NULL)); 6139566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpidense_C", NULL)); 6149566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidense_mpiaij_C", NULL)); 6156718818eSStefano Zampini #if defined(PETSC_HAVE_CUDA) 6169566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaijcusparse_mpidense_C", NULL)); 6179566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidense_mpiaijcusparse_C", NULL)); 6182e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_mpidensecuda_C", NULL)); 6192e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidensecuda_mpidense_C", NULL)); 6202e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpidensecuda_C", NULL)); 6212e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaijcusparse_mpidensecuda_C", NULL)); 6222e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidensecuda_mpiaij_C", NULL)); 6232e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidensecuda_mpiaijcusparse_C", NULL)); 6242e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDAGetArray_C", NULL)); 6252e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDAGetArrayRead_C", NULL)); 6262e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDAGetArrayWrite_C", NULL)); 6272e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDARestoreArray_C", NULL)); 6282e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDARestoreArrayRead_C", NULL)); 6292e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDARestoreArrayWrite_C", NULL)); 6302e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDAPlaceArray_C", NULL)); 6312e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDAResetArray_C", NULL)); 6322e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDAReplaceArray_C", NULL)); 6333d9668e3SJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDASetPreallocation_C", NULL)); 6346718818eSStefano Zampini #endif 63547d993e7Ssuyashtn #if defined(PETSC_HAVE_HIP) 63647d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaijhipsparse_mpidense_C", NULL)); 63747d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidense_mpiaijhipsparse_C", NULL)); 63847d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_mpidensehip_C", NULL)); 63947d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidensehip_mpidense_C", NULL)); 64047d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpidensehip_C", NULL)); 64147d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaijhipsparse_mpidensehip_C", NULL)); 64247d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidensehip_mpiaij_C", NULL)); 64347d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidensehip_mpiaijhipsparse_C", NULL)); 64447d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPGetArray_C", NULL)); 64547d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPGetArrayRead_C", NULL)); 64647d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPGetArrayWrite_C", NULL)); 64747d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPRestoreArray_C", NULL)); 64847d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPRestoreArrayRead_C", NULL)); 64947d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPRestoreArrayWrite_C", NULL)); 65047d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPPlaceArray_C", NULL)); 65147d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPResetArray_C", NULL)); 65247d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPReplaceArray_C", NULL)); 6533d9668e3SJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPSetPreallocation_C", NULL)); 65447d993e7Ssuyashtn #endif 6559566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumn_C", NULL)); 6569566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumn_C", NULL)); 6579566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVec_C", NULL)); 6589566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVec_C", NULL)); 6599566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVecRead_C", NULL)); 6609566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVecRead_C", NULL)); 6619566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVecWrite_C", NULL)); 6629566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVecWrite_C", NULL)); 6639566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetSubMatrix_C", NULL)); 6649566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreSubMatrix_C", NULL)); 665f8103e6bSStefano Zampini 666f8103e6bSStefano Zampini PetscCall(PetscObjectCompose((PetscObject)mat, "DiagonalBlock", NULL)); 6673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6688965ea79SLois Curfman McInnes } 66939ddd567SLois Curfman McInnes 67052c5f739Sprj- PETSC_INTERN PetscErrorCode MatView_SeqDense(Mat, PetscViewer); 67152c5f739Sprj- 6729804daf3SBarry Smith #include <petscdraw.h> 673d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) 674d71ae5a4SJacob Faibussowitsch { 67539ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 676616b8fbbSStefano Zampini PetscMPIInt rank; 67719fd82e9SBarry Smith PetscViewerType vtype; 678ace3abfcSBarry Smith PetscBool iascii, isdraw; 679b0a32e0cSBarry Smith PetscViewer sviewer; 680f3ef73ceSBarry Smith PetscViewerFormat format; 6818965ea79SLois Curfman McInnes 6823a40ed3dSBarry Smith PetscFunctionBegin; 6839566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 6849566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 6859566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 68632077d6dSBarry Smith if (iascii) { 6879566063dSJacob Faibussowitsch PetscCall(PetscViewerGetType(viewer, &vtype)); 6889566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 689456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 6904e220ebcSLois Curfman McInnes MatInfo info; 6919566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 6929566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 6939371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, " [%d] local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %" PetscInt_FMT " \n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 6949371c9d4SSatish Balay (PetscInt)info.memory)); 6959566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 6969566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 6976f08ad05SPierre Jolivet if (mdn->Mvctx) PetscCall(PetscSFView(mdn->Mvctx, viewer)); 6983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 699fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 7003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7018965ea79SLois Curfman McInnes } 702f1af5d2fSBarry Smith } else if (isdraw) { 703b0a32e0cSBarry Smith PetscDraw draw; 704ace3abfcSBarry Smith PetscBool isnull; 705f1af5d2fSBarry Smith 7069566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 7079566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 7083ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 709f1af5d2fSBarry Smith } 71077ed5343SBarry Smith 7117da1fb6eSBarry Smith { 7128965ea79SLois Curfman McInnes /* assemble the entire matrix onto first processor. */ 7138965ea79SLois Curfman McInnes Mat A; 714d0f46423SBarry Smith PetscInt M = mat->rmap->N, N = mat->cmap->N, m, row, i, nz; 715ba8c8a56SBarry Smith PetscInt *cols; 716ba8c8a56SBarry Smith PetscScalar *vals; 7178965ea79SLois Curfman McInnes 7189566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A)); 719dd400576SPatrick Sanan if (rank == 0) { 7209566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, M, N, M, N)); 7213a40ed3dSBarry Smith } else { 7229566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, 0, 0, M, N)); 7238965ea79SLois Curfman McInnes } 7247adad957SLisandro Dalcin /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */ 7259566063dSJacob Faibussowitsch PetscCall(MatSetType(A, MATMPIDENSE)); 7269566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(A, NULL)); 7278965ea79SLois Curfman McInnes 72839ddd567SLois Curfman McInnes /* Copy the matrix ... This isn't the most efficient means, 72939ddd567SLois Curfman McInnes but it's quick for now */ 73051022da4SBarry Smith A->insertmode = INSERT_VALUES; 7312205254eSKarl Rupp 7322205254eSKarl Rupp row = mat->rmap->rstart; 7332205254eSKarl Rupp m = mdn->A->rmap->n; 7348965ea79SLois Curfman McInnes for (i = 0; i < m; i++) { 7359566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIDense(mat, row, &nz, &cols, &vals)); 7369566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIDense(A, 1, &row, nz, cols, vals, INSERT_VALUES)); 7379566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIDense(mat, row, &nz, &cols, &vals)); 73839ddd567SLois Curfman McInnes row++; 7398965ea79SLois Curfman McInnes } 7408965ea79SLois Curfman McInnes 7419566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 7429566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 7439566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 744dd400576SPatrick Sanan if (rank == 0) { 7459566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)((Mat_MPIDense *)(A->data))->A, ((PetscObject)mat)->name)); 7469566063dSJacob Faibussowitsch PetscCall(MatView_SeqDense(((Mat_MPIDense *)(A->data))->A, sviewer)); 7478965ea79SLois Curfman McInnes } 7489566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 7499566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 7509566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 7518965ea79SLois Curfman McInnes } 7523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7538965ea79SLois Curfman McInnes } 7548965ea79SLois Curfman McInnes 755d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIDense(Mat mat, PetscViewer viewer) 756d71ae5a4SJacob Faibussowitsch { 757ace3abfcSBarry Smith PetscBool iascii, isbinary, isdraw, issocket; 7588965ea79SLois Curfman McInnes 759433994e6SBarry Smith PetscFunctionBegin; 7609566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 7619566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 7629566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 7639566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 7640f5bd95cSBarry Smith 76532077d6dSBarry Smith if (iascii || issocket || isdraw) { 7669566063dSJacob Faibussowitsch PetscCall(MatView_MPIDense_ASCIIorDraworSocket(mat, viewer)); 7671baa6e33SBarry Smith } else if (isbinary) PetscCall(MatView_Dense_Binary(mat, viewer)); 7683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7698965ea79SLois Curfman McInnes } 7708965ea79SLois Curfman McInnes 771d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetInfo_MPIDense(Mat A, MatInfoType flag, MatInfo *info) 772d71ae5a4SJacob Faibussowitsch { 7733501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense *)A->data; 7743501a2bdSLois Curfman McInnes Mat mdn = mat->A; 7753966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 7768965ea79SLois Curfman McInnes 7773a40ed3dSBarry Smith PetscFunctionBegin; 7784e220ebcSLois Curfman McInnes info->block_size = 1.0; 7792205254eSKarl Rupp 7809566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mdn, MAT_LOCAL, info)); 7812205254eSKarl Rupp 7829371c9d4SSatish Balay isend[0] = info->nz_used; 7839371c9d4SSatish Balay isend[1] = info->nz_allocated; 7849371c9d4SSatish Balay isend[2] = info->nz_unneeded; 7859371c9d4SSatish Balay isend[3] = info->memory; 7869371c9d4SSatish Balay isend[4] = info->mallocs; 7878965ea79SLois Curfman McInnes if (flag == MAT_LOCAL) { 7884e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 7894e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 7904e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 7914e220ebcSLois Curfman McInnes info->memory = isend[3]; 7924e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 7938965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 7941c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)A))); 7952205254eSKarl Rupp 7964e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7974e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7984e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7994e220ebcSLois Curfman McInnes info->memory = irecv[3]; 8004e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 8018965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 8021c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)A))); 8032205254eSKarl Rupp 8044e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 8054e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 8064e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 8074e220ebcSLois Curfman McInnes info->memory = irecv[3]; 8084e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 8098965ea79SLois Curfman McInnes } 8104e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 8114e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 8124e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 8133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8148965ea79SLois Curfman McInnes } 8158965ea79SLois Curfman McInnes 816d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetOption_MPIDense(Mat A, MatOption op, PetscBool flg) 817d71ae5a4SJacob Faibussowitsch { 81839ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense *)A->data; 8198965ea79SLois Curfman McInnes 8203a40ed3dSBarry Smith PetscFunctionBegin; 82112c028f9SKris Buschelman switch (op) { 822512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 82312c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 82412c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 82543674050SBarry Smith MatCheckPreallocated(A, 1); 8269566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 82712c028f9SKris Buschelman break; 82812c028f9SKris Buschelman case MAT_ROW_ORIENTED: 82943674050SBarry Smith MatCheckPreallocated(A, 1); 8304e0d8c25SBarry Smith a->roworiented = flg; 8319566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 83212c028f9SKris Buschelman break; 8338c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 83413fa8e87SLisandro Dalcin case MAT_KEEP_NONZERO_PATTERN: 83512c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 836d71ae5a4SJacob Faibussowitsch case MAT_SORTED_FULL: 837d71ae5a4SJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 838d71ae5a4SJacob Faibussowitsch break; 839d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES: 840d71ae5a4SJacob Faibussowitsch a->donotstash = flg; 841d71ae5a4SJacob Faibussowitsch break; 84277e54ba9SKris Buschelman case MAT_SYMMETRIC: 84377e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 8449a4540c5SBarry Smith case MAT_HERMITIAN: 8459a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 846b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 847b94d7dedSBarry Smith case MAT_SPD: 848600fe468SBarry Smith case MAT_IGNORE_LOWER_TRIANGULAR: 8495d7aebe8SStefano Zampini case MAT_IGNORE_ZERO_ENTRIES: 850b94d7dedSBarry Smith case MAT_SPD_ETERNAL: 851b94d7dedSBarry Smith /* if the diagonal matrix is square it inherits some of the properties above */ 8529566063dSJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 85377e54ba9SKris Buschelman break; 854d71ae5a4SJacob Faibussowitsch default: 855d71ae5a4SJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "unknown option %s", MatOptions[op]); 8563a40ed3dSBarry Smith } 8573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8588965ea79SLois Curfman McInnes } 8598965ea79SLois Curfman McInnes 860d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDiagonalScale_MPIDense(Mat A, Vec ll, Vec rr) 861d71ae5a4SJacob Faibussowitsch { 8625b2fa520SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)A->data; 863637a0070SStefano Zampini const PetscScalar *l; 864637a0070SStefano Zampini PetscScalar x, *v, *vv, *r; 865637a0070SStefano Zampini PetscInt i, j, s2a, s3a, s2, s3, m = mdn->A->rmap->n, n = mdn->A->cmap->n, lda; 8665b2fa520SLois Curfman McInnes 8675b2fa520SLois Curfman McInnes PetscFunctionBegin; 8689566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(mdn->A, &vv)); 8699566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(mdn->A, &lda)); 8709566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, &s2, &s3)); 8715b2fa520SLois Curfman McInnes if (ll) { 8729566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll, &s2a)); 87308401ef6SPierre Jolivet PetscCheck(s2a == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Left scaling vector non-conforming local size, %" PetscInt_FMT " != %" PetscInt_FMT, s2a, s2); 8749566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(ll, &l)); 8755b2fa520SLois Curfman McInnes for (i = 0; i < m; i++) { 8765b2fa520SLois Curfman McInnes x = l[i]; 877637a0070SStefano Zampini v = vv + i; 8789371c9d4SSatish Balay for (j = 0; j < n; j++) { 8799371c9d4SSatish Balay (*v) *= x; 8809371c9d4SSatish Balay v += lda; 8819371c9d4SSatish Balay } 8825b2fa520SLois Curfman McInnes } 8839566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(ll, &l)); 8849566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(1.0 * n * m)); 8855b2fa520SLois Curfman McInnes } 8865b2fa520SLois Curfman McInnes if (rr) { 887637a0070SStefano Zampini const PetscScalar *ar; 888637a0070SStefano Zampini 8899566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &s3a)); 89008401ef6SPierre Jolivet PetscCheck(s3a == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Right scaling vec non-conforming local size, %" PetscInt_FMT " != %" PetscInt_FMT ".", s3a, s3); 8919566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(rr, &ar)); 8926f08ad05SPierre Jolivet if (!mdn->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); 8939566063dSJacob Faibussowitsch PetscCall(VecGetArray(mdn->lvec, &r)); 8949566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(mdn->Mvctx, MPIU_SCALAR, ar, r, MPI_REPLACE)); 8959566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(mdn->Mvctx, MPIU_SCALAR, ar, r, MPI_REPLACE)); 8969566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(rr, &ar)); 8975b2fa520SLois Curfman McInnes for (i = 0; i < n; i++) { 8985b2fa520SLois Curfman McInnes x = r[i]; 899637a0070SStefano Zampini v = vv + i * lda; 9002205254eSKarl Rupp for (j = 0; j < m; j++) (*v++) *= x; 9015b2fa520SLois Curfman McInnes } 9029566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mdn->lvec, &r)); 9039566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(1.0 * n * m)); 9045b2fa520SLois Curfman McInnes } 9059566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(mdn->A, &vv)); 9063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9075b2fa520SLois Curfman McInnes } 9085b2fa520SLois Curfman McInnes 909d71ae5a4SJacob Faibussowitsch PetscErrorCode MatNorm_MPIDense(Mat A, NormType type, PetscReal *nrm) 910d71ae5a4SJacob Faibussowitsch { 9113501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)A->data; 91213f74950SBarry Smith PetscInt i, j; 913616b8fbbSStefano Zampini PetscMPIInt size; 914329f5518SBarry Smith PetscReal sum = 0.0; 915637a0070SStefano Zampini const PetscScalar *av, *v; 9163501a2bdSLois Curfman McInnes 9173a40ed3dSBarry Smith PetscFunctionBegin; 9189566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(mdn->A, &av)); 919637a0070SStefano Zampini v = av; 9209566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 921616b8fbbSStefano Zampini if (size == 1) { 9229566063dSJacob Faibussowitsch PetscCall(MatNorm(mdn->A, type, nrm)); 9233501a2bdSLois Curfman McInnes } else { 9243501a2bdSLois Curfman McInnes if (type == NORM_FROBENIUS) { 925d0f46423SBarry Smith for (i = 0; i < mdn->A->cmap->n * mdn->A->rmap->n; i++) { 9269371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 9279371c9d4SSatish Balay v++; 9283501a2bdSLois Curfman McInnes } 9291c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A))); 9308f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 9319566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * mdn->A->cmap->n * mdn->A->rmap->n)); 9323a40ed3dSBarry Smith } else if (type == NORM_1) { 933329f5518SBarry Smith PetscReal *tmp, *tmp2; 9349566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(A->cmap->N, &tmp, A->cmap->N, &tmp2)); 935064f8208SBarry Smith *nrm = 0.0; 936637a0070SStefano Zampini v = av; 937d0f46423SBarry Smith for (j = 0; j < mdn->A->cmap->n; j++) { 938d0f46423SBarry Smith for (i = 0; i < mdn->A->rmap->n; i++) { 9399371c9d4SSatish Balay tmp[j] += PetscAbsScalar(*v); 9409371c9d4SSatish Balay v++; 9413501a2bdSLois Curfman McInnes } 9423501a2bdSLois Curfman McInnes } 9431c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(tmp, tmp2, A->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A))); 944d0f46423SBarry Smith for (j = 0; j < A->cmap->N; j++) { 945064f8208SBarry Smith if (tmp2[j] > *nrm) *nrm = tmp2[j]; 9463501a2bdSLois Curfman McInnes } 9479566063dSJacob Faibussowitsch PetscCall(PetscFree2(tmp, tmp2)); 9489566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(A->cmap->n * A->rmap->n)); 9493a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 950329f5518SBarry Smith PetscReal ntemp; 9519566063dSJacob Faibussowitsch PetscCall(MatNorm(mdn->A, type, &ntemp)); 9521c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&ntemp, nrm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A))); 953ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "No support for two norm"); 9543501a2bdSLois Curfman McInnes } 9559566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(mdn->A, &av)); 9563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9573501a2bdSLois Curfman McInnes } 9583501a2bdSLois Curfman McInnes 959d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTranspose_MPIDense(Mat A, MatReuse reuse, Mat *matout) 960d71ae5a4SJacob Faibussowitsch { 9613501a2bdSLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense *)A->data; 9623501a2bdSLois Curfman McInnes Mat B; 963d0f46423SBarry Smith PetscInt M = A->rmap->N, N = A->cmap->N, m, n, *rwork, rstart = A->rmap->rstart; 964637a0070SStefano Zampini PetscInt j, i, lda; 96587828ca2SBarry Smith PetscScalar *v; 9663501a2bdSLois Curfman McInnes 9673a40ed3dSBarry Smith PetscFunctionBegin; 9687fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout)); 969cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 9709566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 9719566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M)); 9729566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)A)->type_name)); 9739566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(B, NULL)); 974637a0070SStefano Zampini } else B = *matout; 9753501a2bdSLois Curfman McInnes 9769371c9d4SSatish Balay m = a->A->rmap->n; 9779371c9d4SSatish Balay n = a->A->cmap->n; 9789566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A, (const PetscScalar **)&v)); 9799566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &lda)); 9809566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &rwork)); 9813501a2bdSLois Curfman McInnes for (i = 0; i < m; i++) rwork[i] = rstart + i; 9821acff37aSSatish Balay for (j = 0; j < n; j++) { 9839566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, 1, &j, m, rwork, v, INSERT_VALUES)); 984637a0070SStefano Zampini v += lda; 9853501a2bdSLois Curfman McInnes } 9869566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A, (const PetscScalar **)&v)); 9879566063dSJacob Faibussowitsch PetscCall(PetscFree(rwork)); 9889566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 9899566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 990cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) { 9913501a2bdSLois Curfman McInnes *matout = B; 9923501a2bdSLois Curfman McInnes } else { 9939566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(A, &B)); 9943501a2bdSLois Curfman McInnes } 9953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 996096963f5SLois Curfman McInnes } 997096963f5SLois Curfman McInnes 9986849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat, MatDuplicateOption, Mat *); 99952c5f739Sprj- PETSC_INTERN PetscErrorCode MatScale_MPIDense(Mat, PetscScalar); 10008965ea79SLois Curfman McInnes 1001d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetUp_MPIDense(Mat A) 1002d71ae5a4SJacob Faibussowitsch { 1003273d9f13SBarry Smith PetscFunctionBegin; 10049566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->rmap)); 10059566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->cmap)); 100648a46eb9SPierre Jolivet if (!A->preallocated) PetscCall(MatMPIDenseSetPreallocation(A, NULL)); 10073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1008273d9f13SBarry Smith } 1009273d9f13SBarry Smith 1010d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPY_MPIDense(Mat Y, PetscScalar alpha, Mat X, MatStructure str) 1011d71ae5a4SJacob Faibussowitsch { 1012488007eeSBarry Smith Mat_MPIDense *A = (Mat_MPIDense *)Y->data, *B = (Mat_MPIDense *)X->data; 1013488007eeSBarry Smith 1014488007eeSBarry Smith PetscFunctionBegin; 10159566063dSJacob Faibussowitsch PetscCall(MatAXPY(A->A, alpha, B->A, str)); 10163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1017488007eeSBarry Smith } 1018488007eeSBarry Smith 1019d71ae5a4SJacob Faibussowitsch PetscErrorCode MatConjugate_MPIDense(Mat mat) 1020d71ae5a4SJacob Faibussowitsch { 1021ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense *)mat->data; 1022ba337c44SJed Brown 1023ba337c44SJed Brown PetscFunctionBegin; 10249566063dSJacob Faibussowitsch PetscCall(MatConjugate(a->A)); 10253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1026ba337c44SJed Brown } 1027ba337c44SJed Brown 1028d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRealPart_MPIDense(Mat A) 1029d71ae5a4SJacob Faibussowitsch { 1030ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense *)A->data; 1031ba337c44SJed Brown 1032ba337c44SJed Brown PetscFunctionBegin; 10339566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 10343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1035ba337c44SJed Brown } 1036ba337c44SJed Brown 1037d71ae5a4SJacob Faibussowitsch PetscErrorCode MatImaginaryPart_MPIDense(Mat A) 1038d71ae5a4SJacob Faibussowitsch { 1039ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense *)A->data; 1040ba337c44SJed Brown 1041ba337c44SJed Brown PetscFunctionBegin; 10429566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 10433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1044ba337c44SJed Brown } 1045ba337c44SJed Brown 1046d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatGetColumnVector_MPIDense(Mat A, Vec v, PetscInt col) 1047d71ae5a4SJacob Faibussowitsch { 1048637a0070SStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 104949a6ff4bSBarry Smith 105049a6ff4bSBarry Smith PetscFunctionBegin; 105128b400f6SJacob Faibussowitsch PetscCheck(a->A, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Missing local matrix"); 105228b400f6SJacob Faibussowitsch PetscCheck(a->A->ops->getcolumnvector, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Missing get column operation"); 10539566063dSJacob Faibussowitsch PetscCall((*a->A->ops->getcolumnvector)(a->A, v, col)); 10543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 105549a6ff4bSBarry Smith } 105649a6ff4bSBarry Smith 1057857cbf51SRichard Tran Mills PETSC_INTERN PetscErrorCode MatGetColumnReductions_SeqDense(Mat, PetscInt, PetscReal *); 105852c5f739Sprj- 1059d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetColumnReductions_MPIDense(Mat A, PetscInt type, PetscReal *reductions) 1060d71ae5a4SJacob Faibussowitsch { 1061a873a8cdSSam Reynolds PetscInt i, m, n; 10620716a85fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense *)A->data; 10630716a85fSBarry Smith PetscReal *work; 10640716a85fSBarry Smith 10650716a85fSBarry Smith PetscFunctionBegin; 10669566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &n)); 10679566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &work)); 1068857cbf51SRichard Tran Mills if (type == REDUCTION_MEAN_REALPART) { 10699566063dSJacob Faibussowitsch PetscCall(MatGetColumnReductions_SeqDense(a->A, (PetscInt)REDUCTION_SUM_REALPART, work)); 1070857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_IMAGINARYPART) { 10719566063dSJacob Faibussowitsch PetscCall(MatGetColumnReductions_SeqDense(a->A, (PetscInt)REDUCTION_SUM_IMAGINARYPART, work)); 1072a873a8cdSSam Reynolds } else { 10739566063dSJacob Faibussowitsch PetscCall(MatGetColumnReductions_SeqDense(a->A, type, work)); 1074a873a8cdSSam Reynolds } 1075857cbf51SRichard Tran Mills if (type == NORM_2) { 10760716a85fSBarry Smith for (i = 0; i < n; i++) work[i] *= work[i]; 10770716a85fSBarry Smith } 1078857cbf51SRichard Tran Mills if (type == NORM_INFINITY) { 10791c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_MAX, A->hdr.comm)); 10800716a85fSBarry Smith } else { 10811c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work, reductions, n, MPIU_REAL, MPIU_SUM, A->hdr.comm)); 10820716a85fSBarry Smith } 10839566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 1084857cbf51SRichard Tran Mills if (type == NORM_2) { 1085a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] = PetscSqrtReal(reductions[i]); 1086857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 1087a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] /= m; 10880716a85fSBarry Smith } 10893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 10900716a85fSBarry Smith } 10910716a85fSBarry Smith 1092d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetRandom_MPIDense(Mat x, PetscRandom rctx) 1093d71ae5a4SJacob Faibussowitsch { 109473a71a0fSBarry Smith Mat_MPIDense *d = (Mat_MPIDense *)x->data; 109573a71a0fSBarry Smith 109673a71a0fSBarry Smith PetscFunctionBegin; 10979566063dSJacob Faibussowitsch PetscCall(MatSetRandom(d->A, rctx)); 10983faff063SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 10993faff063SStefano Zampini x->offloadmask = d->A->offloadmask; 11003faff063SStefano Zampini #endif 11013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 110273a71a0fSBarry Smith } 110373a71a0fSBarry Smith 1104d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIDense(Mat A, PetscBool *missing, PetscInt *d) 1105d71ae5a4SJacob Faibussowitsch { 11063b49f96aSBarry Smith PetscFunctionBegin; 11073b49f96aSBarry Smith *missing = PETSC_FALSE; 11083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 11093b49f96aSBarry Smith } 11103b49f96aSBarry Smith 11114222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat, Mat, PetscReal, Mat); 1112cc48ffa7SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat, Mat, Mat); 11136718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat, Mat, PetscReal, Mat); 1114a1f9a5e6SStefano Zampini static PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat, Mat, Mat); 11156718818eSStefano Zampini static PetscErrorCode MatEqual_MPIDense(Mat, Mat, PetscBool *); 11166718818eSStefano Zampini static PetscErrorCode MatLoad_MPIDense(Mat, PetscViewer); 1117cc48ffa7SToby Isaac 111809dc0095SBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIDense, 111909dc0095SBarry Smith MatGetRow_MPIDense, 112009dc0095SBarry Smith MatRestoreRow_MPIDense, 112109dc0095SBarry Smith MatMult_MPIDense, 112297304618SKris Buschelman /* 4*/ MatMultAdd_MPIDense, 11237c922b88SBarry Smith MatMultTranspose_MPIDense, 11247c922b88SBarry Smith MatMultTransposeAdd_MPIDense, 1125f4259b30SLisandro Dalcin NULL, 1126f4259b30SLisandro Dalcin NULL, 1127f4259b30SLisandro Dalcin NULL, 1128f4259b30SLisandro Dalcin /* 10*/ NULL, 1129f4259b30SLisandro Dalcin NULL, 1130f4259b30SLisandro Dalcin NULL, 1131f4259b30SLisandro Dalcin NULL, 113209dc0095SBarry Smith MatTranspose_MPIDense, 113397304618SKris Buschelman /* 15*/ MatGetInfo_MPIDense, 11346e4ee0c6SHong Zhang MatEqual_MPIDense, 113509dc0095SBarry Smith MatGetDiagonal_MPIDense, 11365b2fa520SLois Curfman McInnes MatDiagonalScale_MPIDense, 113709dc0095SBarry Smith MatNorm_MPIDense, 113897304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPIDense, 113909dc0095SBarry Smith MatAssemblyEnd_MPIDense, 114009dc0095SBarry Smith MatSetOption_MPIDense, 114109dc0095SBarry Smith MatZeroEntries_MPIDense, 1142d519adbfSMatthew Knepley /* 24*/ MatZeroRows_MPIDense, 1143f4259b30SLisandro Dalcin NULL, 1144f4259b30SLisandro Dalcin NULL, 1145f4259b30SLisandro Dalcin NULL, 1146f4259b30SLisandro Dalcin NULL, 11474994cf47SJed Brown /* 29*/ MatSetUp_MPIDense, 1148f4259b30SLisandro Dalcin NULL, 1149f4259b30SLisandro Dalcin NULL, 1150c56a70eeSBarry Smith MatGetDiagonalBlock_MPIDense, 1151f4259b30SLisandro Dalcin NULL, 1152d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPIDense, 1153f4259b30SLisandro Dalcin NULL, 1154f4259b30SLisandro Dalcin NULL, 1155f4259b30SLisandro Dalcin NULL, 1156f4259b30SLisandro Dalcin NULL, 1157d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPIDense, 11587dae84e0SHong Zhang MatCreateSubMatrices_MPIDense, 1159f4259b30SLisandro Dalcin NULL, 116009dc0095SBarry Smith MatGetValues_MPIDense, 1161a76f77c3SStefano Zampini MatCopy_MPIDense, 1162f4259b30SLisandro Dalcin /* 44*/ NULL, 116309dc0095SBarry Smith MatScale_MPIDense, 11642f605a99SJose E. Roman MatShift_MPIDense, 1165f4259b30SLisandro Dalcin NULL, 1166f4259b30SLisandro Dalcin NULL, 116773a71a0fSBarry Smith /* 49*/ MatSetRandom_MPIDense, 1168f4259b30SLisandro Dalcin NULL, 1169f4259b30SLisandro Dalcin NULL, 1170f4259b30SLisandro Dalcin NULL, 1171f4259b30SLisandro Dalcin NULL, 1172f4259b30SLisandro Dalcin /* 54*/ NULL, 1173f4259b30SLisandro Dalcin NULL, 1174f4259b30SLisandro Dalcin NULL, 1175f4259b30SLisandro Dalcin NULL, 1176f4259b30SLisandro Dalcin NULL, 11777dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPIDense, 1178b9b97703SBarry Smith MatDestroy_MPIDense, 1179b9b97703SBarry Smith MatView_MPIDense, 1180f4259b30SLisandro Dalcin NULL, 1181f4259b30SLisandro Dalcin NULL, 1182f4259b30SLisandro Dalcin /* 64*/ NULL, 1183f4259b30SLisandro Dalcin NULL, 1184f4259b30SLisandro Dalcin NULL, 1185f4259b30SLisandro Dalcin NULL, 1186f4259b30SLisandro Dalcin NULL, 1187f4259b30SLisandro Dalcin /* 69*/ NULL, 1188f4259b30SLisandro Dalcin NULL, 1189f4259b30SLisandro Dalcin NULL, 1190f4259b30SLisandro Dalcin NULL, 1191f4259b30SLisandro Dalcin NULL, 1192f4259b30SLisandro Dalcin /* 74*/ NULL, 1193f4259b30SLisandro Dalcin NULL, 1194f4259b30SLisandro Dalcin NULL, 1195f4259b30SLisandro Dalcin NULL, 1196f4259b30SLisandro Dalcin NULL, 1197f4259b30SLisandro Dalcin /* 79*/ NULL, 1198f4259b30SLisandro Dalcin NULL, 1199f4259b30SLisandro Dalcin NULL, 1200f4259b30SLisandro Dalcin NULL, 12015bba2384SShri Abhyankar /* 83*/ MatLoad_MPIDense, 1202f4259b30SLisandro Dalcin NULL, 1203f4259b30SLisandro Dalcin NULL, 1204f4259b30SLisandro Dalcin NULL, 1205f4259b30SLisandro Dalcin NULL, 1206f4259b30SLisandro Dalcin NULL, 1207f4259b30SLisandro Dalcin /* 89*/ NULL, 1208f4259b30SLisandro Dalcin NULL, 1209f4259b30SLisandro Dalcin NULL, 1210f4259b30SLisandro Dalcin NULL, 1211f4259b30SLisandro Dalcin NULL, 1212f4259b30SLisandro Dalcin /* 94*/ NULL, 1213f4259b30SLisandro Dalcin NULL, 12146718818eSStefano Zampini MatMatTransposeMultSymbolic_MPIDense_MPIDense, 1215cc48ffa7SToby Isaac MatMatTransposeMultNumeric_MPIDense_MPIDense, 1216f4259b30SLisandro Dalcin NULL, 12174222ddf1SHong Zhang /* 99*/ MatProductSetFromOptions_MPIDense, 1218f4259b30SLisandro Dalcin NULL, 1219f4259b30SLisandro Dalcin NULL, 1220ba337c44SJed Brown MatConjugate_MPIDense, 1221f4259b30SLisandro Dalcin NULL, 1222f4259b30SLisandro Dalcin /*104*/ NULL, 1223ba337c44SJed Brown MatRealPart_MPIDense, 1224ba337c44SJed Brown MatImaginaryPart_MPIDense, 1225f4259b30SLisandro Dalcin NULL, 1226f4259b30SLisandro Dalcin NULL, 1227f4259b30SLisandro Dalcin /*109*/ NULL, 1228f4259b30SLisandro Dalcin NULL, 1229f4259b30SLisandro Dalcin NULL, 123049a6ff4bSBarry Smith MatGetColumnVector_MPIDense, 12313b49f96aSBarry Smith MatMissingDiagonal_MPIDense, 1232f4259b30SLisandro Dalcin /*114*/ NULL, 1233f4259b30SLisandro Dalcin NULL, 1234f4259b30SLisandro Dalcin NULL, 1235f4259b30SLisandro Dalcin NULL, 1236f4259b30SLisandro Dalcin NULL, 1237f4259b30SLisandro Dalcin /*119*/ NULL, 1238f4259b30SLisandro Dalcin NULL, 1239f4259b30SLisandro Dalcin NULL, 1240f4259b30SLisandro Dalcin NULL, 1241f4259b30SLisandro Dalcin NULL, 1242f4259b30SLisandro Dalcin /*124*/ NULL, 1243a873a8cdSSam Reynolds MatGetColumnReductions_MPIDense, 1244f4259b30SLisandro Dalcin NULL, 1245f4259b30SLisandro Dalcin NULL, 1246f4259b30SLisandro Dalcin NULL, 1247f4259b30SLisandro Dalcin /*129*/ NULL, 1248f4259b30SLisandro Dalcin NULL, 12496718818eSStefano Zampini MatTransposeMatMultSymbolic_MPIDense_MPIDense, 1250cb20be35SHong Zhang MatTransposeMatMultNumeric_MPIDense_MPIDense, 1251f4259b30SLisandro Dalcin NULL, 1252f4259b30SLisandro Dalcin /*134*/ NULL, 1253f4259b30SLisandro Dalcin NULL, 1254f4259b30SLisandro Dalcin NULL, 1255f4259b30SLisandro Dalcin NULL, 1256f4259b30SLisandro Dalcin NULL, 1257f4259b30SLisandro Dalcin /*139*/ NULL, 1258f4259b30SLisandro Dalcin NULL, 1259f4259b30SLisandro Dalcin NULL, 1260f4259b30SLisandro Dalcin NULL, 1261f4259b30SLisandro Dalcin NULL, 12624222ddf1SHong Zhang MatCreateMPIMatConcatenateSeqMat_MPIDense, 1263f4259b30SLisandro Dalcin /*145*/ NULL, 1264f4259b30SLisandro Dalcin NULL, 126599a7f59eSMark Adams NULL, 126699a7f59eSMark Adams NULL, 12677fb60732SBarry Smith NULL, 1268dec0b466SHong Zhang /*150*/ NULL, 1269dec0b466SHong Zhang NULL}; 12708965ea79SLois Curfman McInnes 1271d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIDenseSetPreallocation_MPIDense(Mat mat, PetscScalar *data) 1272d71ae5a4SJacob Faibussowitsch { 1273637a0070SStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)mat->data; 127447d993e7Ssuyashtn MatType mtype = MATSEQDENSE; 1275a23d5eceSKris Buschelman 1276a23d5eceSKris Buschelman PetscFunctionBegin; 127728b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)mat), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 12789566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 12799566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 1280637a0070SStefano Zampini if (!a->A) { 12819566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &a->A)); 12829566063dSJacob Faibussowitsch PetscCall(MatSetSizes(a->A, mat->rmap->n, mat->cmap->N, mat->rmap->n, mat->cmap->N)); 1283637a0070SStefano Zampini } 128447d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) 128547d993e7Ssuyashtn PetscBool iscuda; 12869566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)mat, MATMPIDENSECUDA, &iscuda)); 128747d993e7Ssuyashtn if (iscuda) mtype = MATSEQDENSECUDA; 128847d993e7Ssuyashtn #endif 128947d993e7Ssuyashtn #if defined(PETSC_HAVE_HIP) 129047d993e7Ssuyashtn PetscBool iship; 129147d993e7Ssuyashtn PetscCall(PetscObjectTypeCompare((PetscObject)mat, MATMPIDENSEHIP, &iship)); 129247d993e7Ssuyashtn if (iship) mtype = MATSEQDENSEHIP; 129347d993e7Ssuyashtn #endif 129447d993e7Ssuyashtn PetscCall(MatSetType(a->A, mtype)); 12959566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(a->A, data)); 129647d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) 12973faff063SStefano Zampini mat->offloadmask = a->A->offloadmask; 12983faff063SStefano Zampini #endif 1299637a0070SStefano Zampini mat->preallocated = PETSC_TRUE; 13006f08ad05SPierre Jolivet mat->assembled = PETSC_TRUE; 13013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1302a23d5eceSKris Buschelman } 1303a23d5eceSKris Buschelman 1304d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIDense(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 1305d71ae5a4SJacob Faibussowitsch { 13064e29119aSPierre Jolivet Mat B, C; 13074e29119aSPierre Jolivet 13084e29119aSPierre Jolivet PetscFunctionBegin; 13099566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &C)); 13109566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqAIJ_SeqDense(C, MATSEQDENSE, MAT_INITIAL_MATRIX, &B)); 13119566063dSJacob Faibussowitsch PetscCall(MatDestroy(&C)); 13124e29119aSPierre Jolivet if (reuse == MAT_REUSE_MATRIX) { 13134e29119aSPierre Jolivet C = *newmat; 13144e29119aSPierre Jolivet } else C = NULL; 13159566063dSJacob Faibussowitsch PetscCall(MatCreateMPIMatConcatenateSeqMat(PetscObjectComm((PetscObject)A), B, A->cmap->n, !C ? MAT_INITIAL_MATRIX : MAT_REUSE_MATRIX, &C)); 13169566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 13174e29119aSPierre Jolivet if (reuse == MAT_INPLACE_MATRIX) { 13189566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &C)); 13194e29119aSPierre Jolivet } else if (reuse == MAT_INITIAL_MATRIX) *newmat = C; 13203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13214e29119aSPierre Jolivet } 13224e29119aSPierre Jolivet 1323d71ae5a4SJacob Faibussowitsch PetscErrorCode MatConvert_MPIDense_MPIAIJ(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 1324d71ae5a4SJacob Faibussowitsch { 13254e29119aSPierre Jolivet Mat B, C; 13264e29119aSPierre Jolivet 13274e29119aSPierre Jolivet PetscFunctionBegin; 13289566063dSJacob Faibussowitsch PetscCall(MatDenseGetLocalMatrix(A, &C)); 13299566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqDense_SeqAIJ(C, MATSEQAIJ, MAT_INITIAL_MATRIX, &B)); 13304e29119aSPierre Jolivet if (reuse == MAT_REUSE_MATRIX) { 13314e29119aSPierre Jolivet C = *newmat; 13324e29119aSPierre Jolivet } else C = NULL; 13339566063dSJacob Faibussowitsch PetscCall(MatCreateMPIMatConcatenateSeqMat(PetscObjectComm((PetscObject)A), B, A->cmap->n, !C ? MAT_INITIAL_MATRIX : MAT_REUSE_MATRIX, &C)); 13349566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 13354e29119aSPierre Jolivet if (reuse == MAT_INPLACE_MATRIX) { 13369566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &C)); 13374e29119aSPierre Jolivet } else if (reuse == MAT_INITIAL_MATRIX) *newmat = C; 13383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13394e29119aSPierre Jolivet } 13404e29119aSPierre Jolivet 134165b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 1342d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIDense_Elemental(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 1343d71ae5a4SJacob Faibussowitsch { 13448ea901baSHong Zhang Mat mat_elemental; 134532d7a744SHong Zhang PetscScalar *v; 134632d7a744SHong Zhang PetscInt m = A->rmap->n, N = A->cmap->N, rstart = A->rmap->rstart, i, *rows, *cols; 13478ea901baSHong Zhang 13488baccfbdSHong Zhang PetscFunctionBegin; 1349378336b6SHong Zhang if (reuse == MAT_REUSE_MATRIX) { 1350378336b6SHong Zhang mat_elemental = *newmat; 13519566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(*newmat)); 1352378336b6SHong Zhang } else { 13539566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental)); 13549566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat_elemental, PETSC_DECIDE, PETSC_DECIDE, A->rmap->N, A->cmap->N)); 13559566063dSJacob Faibussowitsch PetscCall(MatSetType(mat_elemental, MATELEMENTAL)); 13569566063dSJacob Faibussowitsch PetscCall(MatSetUp(mat_elemental)); 13579566063dSJacob Faibussowitsch PetscCall(MatSetOption(mat_elemental, MAT_ROW_ORIENTED, PETSC_FALSE)); 1358378336b6SHong Zhang } 1359378336b6SHong Zhang 13609566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &rows, N, &cols)); 136132d7a744SHong Zhang for (i = 0; i < N; i++) cols[i] = i; 136232d7a744SHong Zhang for (i = 0; i < m; i++) rows[i] = rstart + i; 13638ea901baSHong Zhang 1364637a0070SStefano Zampini /* PETSc-Elemental interface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */ 13659566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(A, &v)); 13669566063dSJacob Faibussowitsch PetscCall(MatSetValues(mat_elemental, m, rows, N, cols, v, ADD_VALUES)); 13679566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY)); 13689566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY)); 13699566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(A, &v)); 13709566063dSJacob Faibussowitsch PetscCall(PetscFree2(rows, cols)); 13718ea901baSHong Zhang 1372511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 13739566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &mat_elemental)); 13748ea901baSHong Zhang } else { 13758ea901baSHong Zhang *newmat = mat_elemental; 13768ea901baSHong Zhang } 13773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13788baccfbdSHong Zhang } 137965b80a83SHong Zhang #endif 13808baccfbdSHong Zhang 1381d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseGetColumn_MPIDense(Mat A, PetscInt col, PetscScalar **vals) 1382d71ae5a4SJacob Faibussowitsch { 138386aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense *)A->data; 138486aefd0dSHong Zhang 138586aefd0dSHong Zhang PetscFunctionBegin; 13869566063dSJacob Faibussowitsch PetscCall(MatDenseGetColumn(mat->A, col, vals)); 13873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 138886aefd0dSHong Zhang } 138986aefd0dSHong Zhang 1390d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseRestoreColumn_MPIDense(Mat A, PetscScalar **vals) 1391d71ae5a4SJacob Faibussowitsch { 139286aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense *)A->data; 139386aefd0dSHong Zhang 139486aefd0dSHong Zhang PetscFunctionBegin; 13959566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreColumn(mat->A, vals)); 13963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 139786aefd0dSHong Zhang } 139886aefd0dSHong Zhang 1399d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIDense(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) 1400d71ae5a4SJacob Faibussowitsch { 140194e2cb23SJakub Kruzik Mat_MPIDense *mat; 140294e2cb23SJakub Kruzik PetscInt m, nloc, N; 140394e2cb23SJakub Kruzik 140494e2cb23SJakub Kruzik PetscFunctionBegin; 14059566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat, &m, &N)); 14069566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(inmat, NULL, &nloc)); 140794e2cb23SJakub Kruzik if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 140894e2cb23SJakub Kruzik PetscInt sum; 140994e2cb23SJakub Kruzik 141048a46eb9SPierre Jolivet if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnership(comm, &n, &N)); 141194e2cb23SJakub Kruzik /* Check sum(n) = N */ 14121c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&n, &sum, 1, MPIU_INT, MPI_SUM, comm)); 141308401ef6SPierre Jolivet PetscCheck(sum == N, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local columns %" PetscInt_FMT " != global columns %" PetscInt_FMT, sum, N); 141494e2cb23SJakub Kruzik 14159566063dSJacob Faibussowitsch PetscCall(MatCreateDense(comm, m, n, PETSC_DETERMINE, N, NULL, outmat)); 14169566063dSJacob Faibussowitsch PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 141794e2cb23SJakub Kruzik } 141894e2cb23SJakub Kruzik 141994e2cb23SJakub Kruzik /* numeric phase */ 142094e2cb23SJakub Kruzik mat = (Mat_MPIDense *)(*outmat)->data; 14219566063dSJacob Faibussowitsch PetscCall(MatCopy(inmat, mat->A, SAME_NONZERO_PATTERN)); 14223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 142394e2cb23SJakub Kruzik } 142494e2cb23SJakub Kruzik 1425d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetColumnVec_MPIDense(Mat A, PetscInt col, Vec *v) 1426d71ae5a4SJacob Faibussowitsch { 14276947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 14286947451fSStefano Zampini PetscInt lda; 14296947451fSStefano Zampini 14306947451fSStefano Zampini PetscFunctionBegin; 143128b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 143228b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 1433d16ceb75SStefano Zampini if (!a->cvec) PetscCall(MatDenseCreateColumnVec_Private(A, &a->cvec)); 14346947451fSStefano Zampini a->vecinuse = col + 1; 14359566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &lda)); 14369566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(a->A, (PetscScalar **)&a->ptrinuse)); 14379566063dSJacob Faibussowitsch PetscCall(VecPlaceArray(a->cvec, a->ptrinuse + (size_t)col * (size_t)lda)); 14386947451fSStefano Zampini *v = a->cvec; 14393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14406947451fSStefano Zampini } 14416947451fSStefano Zampini 1442d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreColumnVec_MPIDense(Mat A, PetscInt col, Vec *v) 1443d71ae5a4SJacob Faibussowitsch { 14446947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 14456947451fSStefano Zampini 14466947451fSStefano Zampini PetscFunctionBegin; 144728b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseGetColumnVec() first"); 144828b400f6SJacob Faibussowitsch PetscCheck(a->cvec, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Missing internal column vector"); 14496947451fSStefano Zampini a->vecinuse = 0; 14509566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(a->A, (PetscScalar **)&a->ptrinuse)); 14519566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 1452742765d3SMatthew Knepley if (v) *v = NULL; 14533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14546947451fSStefano Zampini } 14556947451fSStefano Zampini 1456d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetColumnVecRead_MPIDense(Mat A, PetscInt col, Vec *v) 1457d71ae5a4SJacob Faibussowitsch { 14586947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 14596947451fSStefano Zampini PetscInt lda; 14606947451fSStefano Zampini 14616947451fSStefano Zampini PetscFunctionBegin; 146228b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 146328b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 1464d16ceb75SStefano Zampini if (!a->cvec) PetscCall(MatDenseCreateColumnVec_Private(A, &a->cvec)); 14656947451fSStefano Zampini a->vecinuse = col + 1; 14669566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &lda)); 14679566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A, &a->ptrinuse)); 14689566063dSJacob Faibussowitsch PetscCall(VecPlaceArray(a->cvec, a->ptrinuse + (size_t)col * (size_t)lda)); 14699566063dSJacob Faibussowitsch PetscCall(VecLockReadPush(a->cvec)); 14706947451fSStefano Zampini *v = a->cvec; 14713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14726947451fSStefano Zampini } 14736947451fSStefano Zampini 1474d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreColumnVecRead_MPIDense(Mat A, PetscInt col, Vec *v) 1475d71ae5a4SJacob Faibussowitsch { 14766947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 14776947451fSStefano Zampini 14786947451fSStefano Zampini PetscFunctionBegin; 14795f80ce2aSJacob Faibussowitsch PetscCheck(a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseGetColumnVec() first"); 14805f80ce2aSJacob Faibussowitsch PetscCheck(a->cvec, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing internal column vector"); 14816947451fSStefano Zampini a->vecinuse = 0; 14829566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A, &a->ptrinuse)); 14839566063dSJacob Faibussowitsch PetscCall(VecLockReadPop(a->cvec)); 14849566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 1485742765d3SMatthew Knepley if (v) *v = NULL; 14863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14876947451fSStefano Zampini } 14886947451fSStefano Zampini 1489d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetColumnVecWrite_MPIDense(Mat A, PetscInt col, Vec *v) 1490d71ae5a4SJacob Faibussowitsch { 14916947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 14926947451fSStefano Zampini PetscInt lda; 14936947451fSStefano Zampini 14946947451fSStefano Zampini PetscFunctionBegin; 14955f80ce2aSJacob Faibussowitsch PetscCheck(!a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 14965f80ce2aSJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 1497d16ceb75SStefano Zampini if (!a->cvec) PetscCall(MatDenseCreateColumnVec_Private(A, &a->cvec)); 14986947451fSStefano Zampini a->vecinuse = col + 1; 14999566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &lda)); 15009566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(a->A, (PetscScalar **)&a->ptrinuse)); 15019566063dSJacob Faibussowitsch PetscCall(VecPlaceArray(a->cvec, a->ptrinuse + (size_t)col * (size_t)lda)); 15026947451fSStefano Zampini *v = a->cvec; 15033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15046947451fSStefano Zampini } 15056947451fSStefano Zampini 1506d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDense(Mat A, PetscInt col, Vec *v) 1507d71ae5a4SJacob Faibussowitsch { 15086947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 15096947451fSStefano Zampini 15106947451fSStefano Zampini PetscFunctionBegin; 15115f80ce2aSJacob Faibussowitsch PetscCheck(a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseGetColumnVec() first"); 15125f80ce2aSJacob Faibussowitsch PetscCheck(a->cvec, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing internal column vector"); 15136947451fSStefano Zampini a->vecinuse = 0; 15149566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(a->A, (PetscScalar **)&a->ptrinuse)); 15159566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 1516742765d3SMatthew Knepley if (v) *v = NULL; 15173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15186947451fSStefano Zampini } 15196947451fSStefano Zampini 1520d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetSubMatrix_MPIDense(Mat A, PetscInt rbegin, PetscInt rend, PetscInt cbegin, PetscInt cend, Mat *v) 1521d71ae5a4SJacob Faibussowitsch { 15225ea7661aSPierre Jolivet Mat_MPIDense *a = (Mat_MPIDense *)A->data; 1523616b8fbbSStefano Zampini Mat_MPIDense *c; 1524616b8fbbSStefano Zampini MPI_Comm comm; 1525a2748737SPierre Jolivet PetscInt pbegin, pend; 15265ea7661aSPierre Jolivet 15275ea7661aSPierre Jolivet PetscFunctionBegin; 15289566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 15295f80ce2aSJacob Faibussowitsch PetscCheck(!a->vecinuse, comm, PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 15305f80ce2aSJacob Faibussowitsch PetscCheck(!a->matinuse, comm, PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 1531a2748737SPierre Jolivet pbegin = PetscMax(0, PetscMin(A->rmap->rend, rbegin) - A->rmap->rstart); 1532a2748737SPierre Jolivet pend = PetscMin(A->rmap->n, PetscMax(0, rend - A->rmap->rstart)); 15335ea7661aSPierre Jolivet if (!a->cmat) { 15349566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &a->cmat)); 15359566063dSJacob Faibussowitsch PetscCall(MatSetType(a->cmat, ((PetscObject)A)->type_name)); 1536a2748737SPierre Jolivet if (rend - rbegin == A->rmap->N) PetscCall(PetscLayoutReference(A->rmap, &a->cmat->rmap)); 1537a2748737SPierre Jolivet else { 1538a2748737SPierre Jolivet PetscCall(PetscLayoutSetLocalSize(a->cmat->rmap, pend - pbegin)); 1539a2748737SPierre Jolivet PetscCall(PetscLayoutSetSize(a->cmat->rmap, rend - rbegin)); 1540a2748737SPierre Jolivet PetscCall(PetscLayoutSetUp(a->cmat->rmap)); 1541a2748737SPierre Jolivet } 15429566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(a->cmat->cmap, cend - cbegin)); 15439566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(a->cmat->cmap)); 1544a2748737SPierre Jolivet } else { 1545a2748737SPierre Jolivet PetscBool same = (PetscBool)(rend - rbegin == a->cmat->rmap->N); 1546a2748737SPierre Jolivet if (same && a->cmat->rmap->N != A->rmap->N) { 1547a2748737SPierre Jolivet same = (PetscBool)(pend - pbegin == a->cmat->rmap->n); 1548a2748737SPierre Jolivet PetscCall(MPIU_Allreduce(MPI_IN_PLACE, &same, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 1549a2748737SPierre Jolivet } 1550a2748737SPierre Jolivet if (!same) { 1551a2748737SPierre Jolivet PetscCall(PetscLayoutDestroy(&a->cmat->rmap)); 1552a2748737SPierre Jolivet PetscCall(PetscLayoutCreate(comm, &a->cmat->rmap)); 1553a2748737SPierre Jolivet PetscCall(PetscLayoutSetLocalSize(a->cmat->rmap, pend - pbegin)); 1554a2748737SPierre Jolivet PetscCall(PetscLayoutSetSize(a->cmat->rmap, rend - rbegin)); 1555a2748737SPierre Jolivet PetscCall(PetscLayoutSetUp(a->cmat->rmap)); 1556a2748737SPierre Jolivet } 1557a2748737SPierre Jolivet if (cend - cbegin != a->cmat->cmap->N) { 15589566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&a->cmat->cmap)); 15599566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &a->cmat->cmap)); 15609566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(a->cmat->cmap, cend - cbegin)); 15619566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(a->cmat->cmap)); 15625ea7661aSPierre Jolivet } 1563a2748737SPierre Jolivet } 1564616b8fbbSStefano Zampini c = (Mat_MPIDense *)a->cmat->data; 15655f80ce2aSJacob Faibussowitsch PetscCheck(!c->A, comm, PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 1566a2748737SPierre Jolivet PetscCall(MatDenseGetSubMatrix(a->A, pbegin, pend, cbegin, cend, &c->A)); 15673faff063SStefano Zampini 1568616b8fbbSStefano Zampini a->cmat->preallocated = PETSC_TRUE; 1569616b8fbbSStefano Zampini a->cmat->assembled = PETSC_TRUE; 15703faff063SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 15713faff063SStefano Zampini a->cmat->offloadmask = c->A->offloadmask; 15723faff063SStefano Zampini #endif 15735ea7661aSPierre Jolivet a->matinuse = cbegin + 1; 15745ea7661aSPierre Jolivet *v = a->cmat; 15753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15765ea7661aSPierre Jolivet } 15775ea7661aSPierre Jolivet 1578d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreSubMatrix_MPIDense(Mat A, Mat *v) 1579d71ae5a4SJacob Faibussowitsch { 15805ea7661aSPierre Jolivet Mat_MPIDense *a = (Mat_MPIDense *)A->data; 1581616b8fbbSStefano Zampini Mat_MPIDense *c; 15825ea7661aSPierre Jolivet 15835ea7661aSPierre Jolivet PetscFunctionBegin; 15845f80ce2aSJacob Faibussowitsch PetscCheck(a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseGetSubMatrix() first"); 15855f80ce2aSJacob Faibussowitsch PetscCheck(a->cmat, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing internal matrix"); 15865f80ce2aSJacob Faibussowitsch PetscCheck(*v == a->cmat, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Not the matrix obtained from MatDenseGetSubMatrix()"); 15875ea7661aSPierre Jolivet a->matinuse = 0; 1588616b8fbbSStefano Zampini c = (Mat_MPIDense *)a->cmat->data; 15899566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreSubMatrix(a->A, &c->A)); 1590742765d3SMatthew Knepley if (v) *v = NULL; 15913faff063SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 15923faff063SStefano Zampini A->offloadmask = a->A->offloadmask; 15933faff063SStefano Zampini #endif 15943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15955ea7661aSPierre Jolivet } 15965ea7661aSPierre Jolivet 1597002bc6daSRichard Tran Mills /*MC 1598002bc6daSRichard Tran Mills MATMPIDENSE - MATMPIDENSE = "mpidense" - A matrix type to be used for distributed dense matrices. 1599002bc6daSRichard Tran Mills 16002ef1f0ffSBarry Smith Options Database Key: 160111a5261eSBarry Smith . -mat_type mpidense - sets the matrix type to `MATMPIDENSE` during a call to `MatSetFromOptions()` 1602002bc6daSRichard Tran Mills 1603002bc6daSRichard Tran Mills Level: beginner 1604002bc6daSRichard Tran Mills 16051cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateDense()`, `MATSEQDENSE`, `MATDENSE` 1606002bc6daSRichard Tran Mills M*/ 16074742e46bSJacob Faibussowitsch PetscErrorCode MatCreate_MPIDense(Mat mat) 1608d71ae5a4SJacob Faibussowitsch { 1609273d9f13SBarry Smith Mat_MPIDense *a; 1610273d9f13SBarry Smith 1611273d9f13SBarry Smith PetscFunctionBegin; 16124dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&a)); 1613b0a32e0cSBarry Smith mat->data = (void *)a; 1614aea10558SJacob Faibussowitsch mat->ops[0] = MatOps_Values; 1615273d9f13SBarry Smith 1616273d9f13SBarry Smith mat->insertmode = NOT_SET_VALUES; 1617273d9f13SBarry Smith 1618273d9f13SBarry Smith /* build cache for off array entries formed */ 1619273d9f13SBarry Smith a->donotstash = PETSC_FALSE; 16202205254eSKarl Rupp 16219566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)mat), 1, &mat->stash)); 1622273d9f13SBarry Smith 1623273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 1624f4259b30SLisandro Dalcin a->lvec = NULL; 1625f4259b30SLisandro Dalcin a->Mvctx = NULL; 1626273d9f13SBarry Smith a->roworiented = PETSC_TRUE; 1627273d9f13SBarry Smith 16289566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetLDA_C", MatDenseGetLDA_MPIDense)); 16299566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseSetLDA_C", MatDenseSetLDA_MPIDense)); 16309566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetArray_C", MatDenseGetArray_MPIDense)); 16319566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreArray_C", MatDenseRestoreArray_MPIDense)); 16329566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetArrayRead_C", MatDenseGetArrayRead_MPIDense)); 16339566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreArrayRead_C", MatDenseRestoreArrayRead_MPIDense)); 16349566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetArrayWrite_C", MatDenseGetArrayWrite_MPIDense)); 16359566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreArrayWrite_C", MatDenseRestoreArrayWrite_MPIDense)); 16369566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDensePlaceArray_C", MatDensePlaceArray_MPIDense)); 16379566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseResetArray_C", MatDenseResetArray_MPIDense)); 16389566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseReplaceArray_C", MatDenseReplaceArray_MPIDense)); 16399566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVec_C", MatDenseGetColumnVec_MPIDense)); 16409566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVec_C", MatDenseRestoreColumnVec_MPIDense)); 16419566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVecRead_C", MatDenseGetColumnVecRead_MPIDense)); 16429566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVecRead_C", MatDenseRestoreColumnVecRead_MPIDense)); 16439566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVecWrite_C", MatDenseGetColumnVecWrite_MPIDense)); 16449566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVecWrite_C", MatDenseRestoreColumnVecWrite_MPIDense)); 16459566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetSubMatrix_C", MatDenseGetSubMatrix_MPIDense)); 16469566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreSubMatrix_C", MatDenseRestoreSubMatrix_MPIDense)); 16479566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpidense_C", MatConvert_MPIAIJ_MPIDense)); 16489566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_mpiaij_C", MatConvert_MPIDense_MPIAIJ)); 16498baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 16509566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_elemental_C", MatConvert_MPIDense_Elemental)); 16518baccfbdSHong Zhang #endif 1652d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 16539566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_scalapack_C", MatConvert_Dense_ScaLAPACK)); 1654d24d4204SJose E. Roman #endif 1655637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 16569566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_mpidensecuda_C", MatConvert_MPIDense_MPIDenseCUDA)); 1657637a0070SStefano Zampini #endif 16589566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIDenseSetPreallocation_C", MatMPIDenseSetPreallocation_MPIDense)); 16599566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpidense_C", MatProductSetFromOptions_MPIAIJ_MPIDense)); 16609566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidense_mpiaij_C", MatProductSetFromOptions_MPIDense_MPIAIJ)); 16616718818eSStefano Zampini #if defined(PETSC_HAVE_CUDA) 16629566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaijcusparse_mpidense_C", MatProductSetFromOptions_MPIAIJ_MPIDense)); 16639566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidense_mpiaijcusparse_C", MatProductSetFromOptions_MPIDense_MPIAIJ)); 16646718818eSStefano Zampini #endif 166547d993e7Ssuyashtn #if defined(PETSC_HAVE_HIP) 166647d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_mpidensehip_C", MatConvert_MPIDense_MPIDenseHIP)); 166747d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaijhipsparse_mpidense_C", MatProductSetFromOptions_MPIAIJ_MPIDense)); 166847d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidense_mpiaijhipsparse_C", MatProductSetFromOptions_MPIDense_MPIAIJ)); 166947d993e7Ssuyashtn #endif 16709566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumn_C", MatDenseGetColumn_MPIDense)); 16719566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumn_C", MatDenseRestoreColumn_MPIDense)); 16729566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)mat, MATMPIDENSE)); 16733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1674273d9f13SBarry Smith } 1675273d9f13SBarry Smith 1676209238afSKris Buschelman /*MC 1677002d173eSKris Buschelman MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices. 1678209238afSKris Buschelman 167911a5261eSBarry Smith This matrix type is identical to `MATSEQDENSE` when constructed with a single process communicator, 168011a5261eSBarry Smith and `MATMPIDENSE` otherwise. 1681209238afSKris Buschelman 16822ef1f0ffSBarry Smith Options Database Key: 168311a5261eSBarry Smith . -mat_type dense - sets the matrix type to `MATDENSE` during a call to `MatSetFromOptions()` 1684209238afSKris Buschelman 1685209238afSKris Buschelman Level: beginner 1686209238afSKris Buschelman 16871cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQDENSE`, `MATMPIDENSE`, `MATDENSECUDA`, `MATDENSEHIP` 16886947451fSStefano Zampini M*/ 16896947451fSStefano Zampini 1690273d9f13SBarry Smith /*@C 1691273d9f13SBarry Smith MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries 1692273d9f13SBarry Smith 16938f490ea3SStefano Zampini Collective 1694273d9f13SBarry Smith 1695273d9f13SBarry Smith Input Parameters: 16961c4f3114SJed Brown . B - the matrix 16972ef1f0ffSBarry Smith - data - optional location of matrix data. Set to `NULL` for PETSc 1698273d9f13SBarry Smith to control all matrix memory allocation. 1699273d9f13SBarry Smith 17002ef1f0ffSBarry Smith Level: intermediate 17012ef1f0ffSBarry Smith 1702273d9f13SBarry Smith Notes: 17032ef1f0ffSBarry Smith The dense format is fully compatible with standard Fortran 1704273d9f13SBarry Smith storage by columns. 1705273d9f13SBarry Smith 1706273d9f13SBarry Smith The data input variable is intended primarily for Fortran programmers 1707273d9f13SBarry Smith who wish to allocate their own matrix memory space. Most users should 17082ef1f0ffSBarry Smith set `data` to `NULL`. 1709273d9f13SBarry Smith 17101cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIDENSE`, `MatCreate()`, `MatCreateSeqDense()`, `MatSetValues()` 1711273d9f13SBarry Smith @*/ 1712d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIDenseSetPreallocation(Mat B, PetscScalar *data) 1713d71ae5a4SJacob Faibussowitsch { 1714273d9f13SBarry Smith PetscFunctionBegin; 1715d5ea218eSStefano Zampini PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 1716cac4c232SBarry Smith PetscTryMethod(B, "MatMPIDenseSetPreallocation_C", (Mat, PetscScalar *), (B, data)); 17173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1718273d9f13SBarry Smith } 1719273d9f13SBarry Smith 1720d3042a70SBarry Smith /*@ 172111a5261eSBarry Smith MatDensePlaceArray - Allows one to replace the array in a `MATDENSE` matrix with an 1722d3042a70SBarry Smith array provided by the user. This is useful to avoid copying an array 1723d3042a70SBarry Smith into a matrix 1724d3042a70SBarry Smith 1725d3042a70SBarry Smith Not Collective 1726d3042a70SBarry Smith 1727d3042a70SBarry Smith Input Parameters: 1728d3042a70SBarry Smith + mat - the matrix 1729d3042a70SBarry Smith - array - the array in column major order 1730d3042a70SBarry Smith 17312ef1f0ffSBarry Smith Level: developer 17322ef1f0ffSBarry Smith 173311a5261eSBarry Smith Note: 173411a5261eSBarry Smith You can return to the original array with a call to `MatDenseResetArray()`. The user is responsible for freeing this array; it will not be 1735d3042a70SBarry Smith freed when the matrix is destroyed. 1736d3042a70SBarry Smith 17371cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MatDenseGetArray()`, `MatDenseResetArray()`, `VecPlaceArray()`, `VecGetArray()`, `VecRestoreArray()`, `VecReplaceArray()`, `VecResetArray()`, 173811a5261eSBarry Smith `MatDenseReplaceArray()` 1739d3042a70SBarry Smith @*/ 1740d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDensePlaceArray(Mat mat, const PetscScalar *array) 1741d71ae5a4SJacob Faibussowitsch { 1742d3042a70SBarry Smith PetscFunctionBegin; 1743d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 1744cac4c232SBarry Smith PetscUseMethod(mat, "MatDensePlaceArray_C", (Mat, const PetscScalar *), (mat, array)); 17459566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 174647d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) 1747637a0070SStefano Zampini mat->offloadmask = PETSC_OFFLOAD_CPU; 1748637a0070SStefano Zampini #endif 17493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1750d3042a70SBarry Smith } 1751d3042a70SBarry Smith 1752d3042a70SBarry Smith /*@ 175311a5261eSBarry Smith MatDenseResetArray - Resets the matrix array to that it previously had before the call to `MatDensePlaceArray()` 1754d3042a70SBarry Smith 1755d3042a70SBarry Smith Not Collective 1756d3042a70SBarry Smith 17572fe279fdSBarry Smith Input Parameter: 1758d3042a70SBarry Smith . mat - the matrix 1759d3042a70SBarry Smith 17602ef1f0ffSBarry Smith Level: developer 17612ef1f0ffSBarry Smith 176211a5261eSBarry Smith Note: 176311a5261eSBarry Smith You can only call this after a call to `MatDensePlaceArray()` 1764d3042a70SBarry Smith 17651cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MatDenseGetArray()`, `MatDensePlaceArray()`, `VecPlaceArray()`, `VecGetArray()`, `VecRestoreArray()`, `VecReplaceArray()`, `VecResetArray()` 1766d3042a70SBarry Smith @*/ 1767d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseResetArray(Mat mat) 1768d71ae5a4SJacob Faibussowitsch { 1769d3042a70SBarry Smith PetscFunctionBegin; 1770d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 1771cac4c232SBarry Smith PetscUseMethod(mat, "MatDenseResetArray_C", (Mat), (mat)); 17729566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 17733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1774d3042a70SBarry Smith } 1775d3042a70SBarry Smith 1776d5ea218eSStefano Zampini /*@ 1777d5ea218eSStefano Zampini MatDenseReplaceArray - Allows one to replace the array in a dense matrix with an 1778d5ea218eSStefano Zampini array provided by the user. This is useful to avoid copying an array 1779d5ea218eSStefano Zampini into a matrix 1780d5ea218eSStefano Zampini 1781d5ea218eSStefano Zampini Not Collective 1782d5ea218eSStefano Zampini 1783d5ea218eSStefano Zampini Input Parameters: 1784d5ea218eSStefano Zampini + mat - the matrix 1785d5ea218eSStefano Zampini - array - the array in column major order 1786d5ea218eSStefano Zampini 17872ef1f0ffSBarry Smith Level: developer 17882ef1f0ffSBarry Smith 178911a5261eSBarry Smith Note: 179011a5261eSBarry Smith The memory passed in MUST be obtained with `PetscMalloc()` and CANNOT be 1791d5ea218eSStefano Zampini freed by the user. It will be freed when the matrix is destroyed. 1792d5ea218eSStefano Zampini 17931cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatDensePlaceArray()`, `MatDenseGetArray()`, `VecReplaceArray()` 1794d5ea218eSStefano Zampini @*/ 1795d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseReplaceArray(Mat mat, const PetscScalar *array) 1796d71ae5a4SJacob Faibussowitsch { 1797d5ea218eSStefano Zampini PetscFunctionBegin; 1798d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 1799cac4c232SBarry Smith PetscUseMethod(mat, "MatDenseReplaceArray_C", (Mat, const PetscScalar *), (mat, array)); 18009566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 180147d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) 1802d5ea218eSStefano Zampini mat->offloadmask = PETSC_OFFLOAD_CPU; 1803d5ea218eSStefano Zampini #endif 18043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1805d5ea218eSStefano Zampini } 1806d5ea218eSStefano Zampini 1807637a0070SStefano Zampini /*@C 180811a5261eSBarry Smith MatCreateDense - Creates a matrix in `MATDENSE` format. 18098965ea79SLois Curfman McInnes 1810d083f849SBarry Smith Collective 1811db81eaa0SLois Curfman McInnes 18128965ea79SLois Curfman McInnes Input Parameters: 1813db81eaa0SLois Curfman McInnes + comm - MPI communicator 18142ef1f0ffSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if `M` is given) 18152ef1f0ffSBarry Smith . n - number of local columns (or `PETSC_DECIDE` to have calculated if `N` is given) 18162ef1f0ffSBarry Smith . M - number of global rows (or `PETSC_DECIDE` to have calculated if `m` is given) 18172ef1f0ffSBarry Smith . N - number of global columns (or `PETSC_DECIDE` to have calculated if `n` is given) 18182ef1f0ffSBarry Smith - data - optional location of matrix data. Set data to `NULL` (`PETSC_NULL_SCALAR` for Fortran users) for PETSc 1819dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 18208965ea79SLois Curfman McInnes 18218965ea79SLois Curfman McInnes Output Parameter: 1822477f1c0bSLois Curfman McInnes . A - the matrix 18238965ea79SLois Curfman McInnes 18242ef1f0ffSBarry Smith Level: intermediate 18252ef1f0ffSBarry Smith 1826b259b22eSLois Curfman McInnes Notes: 18272ef1f0ffSBarry Smith The dense format is fully compatible with standard Fortran 182839ddd567SLois Curfman McInnes storage by columns. 182911a5261eSBarry Smith 183011a5261eSBarry Smith Although local portions of the matrix are stored in column-major 1831002bc6daSRichard Tran Mills order, the matrix is partitioned across MPI ranks by row. 18328965ea79SLois Curfman McInnes 183318f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 183418f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 18352ef1f0ffSBarry Smith set `data` to `NULL` (`PETSC_NULL_SCALAR` for Fortran users). 183618f449edSLois Curfman McInnes 18378965ea79SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 18388965ea79SLois Curfman McInnes (possibly both). 18398965ea79SLois Curfman McInnes 18401cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MatCreate()`, `MatCreateSeqDense()`, `MatSetValues()` 18418965ea79SLois Curfman McInnes @*/ 1842d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateDense(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscScalar *data, Mat *A) 1843d71ae5a4SJacob Faibussowitsch { 18443a40ed3dSBarry Smith PetscFunctionBegin; 18459566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 18469566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 18476f08ad05SPierre Jolivet PetscCall(MatSetType(*A, MATDENSE)); 18489566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(*A, data)); 18496f08ad05SPierre Jolivet PetscCall(MatMPIDenseSetPreallocation(*A, data)); 18503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18518965ea79SLois Curfman McInnes } 18528965ea79SLois Curfman McInnes 1853d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDuplicate_MPIDense(Mat A, MatDuplicateOption cpvalues, Mat *newmat) 1854d71ae5a4SJacob Faibussowitsch { 18558965ea79SLois Curfman McInnes Mat mat; 18563501a2bdSLois Curfman McInnes Mat_MPIDense *a, *oldmat = (Mat_MPIDense *)A->data; 18578965ea79SLois Curfman McInnes 18583a40ed3dSBarry Smith PetscFunctionBegin; 1859f4259b30SLisandro Dalcin *newmat = NULL; 18609566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &mat)); 18619566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N)); 18629566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)A)->type_name)); 1863834f8fabSBarry Smith a = (Mat_MPIDense *)mat->data; 18645aa7edbeSHong Zhang 1865d5f3da31SBarry Smith mat->factortype = A->factortype; 1866c456f294SBarry Smith mat->assembled = PETSC_TRUE; 1867273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 18688965ea79SLois Curfman McInnes 1869e0fa3b82SLois Curfman McInnes mat->insertmode = NOT_SET_VALUES; 18703782ba37SSatish Balay a->donotstash = oldmat->donotstash; 1871e04c1aa4SHong Zhang 18729566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->rmap, &mat->rmap)); 18739566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->cmap, &mat->cmap)); 18748965ea79SLois Curfman McInnes 18759566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 187601b82886SBarry Smith 18778965ea79SLois Curfman McInnes *newmat = mat; 18783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18798965ea79SLois Curfman McInnes } 18808965ea79SLois Curfman McInnes 1881d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIDense(Mat newMat, PetscViewer viewer) 1882d71ae5a4SJacob Faibussowitsch { 188387d5ce66SSatish Balay PetscBool isbinary; 188487d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 188587d5ce66SSatish Balay PetscBool ishdf5; 188687d5ce66SSatish Balay #endif 1887eb91f321SVaclav Hapla 1888eb91f321SVaclav Hapla PetscFunctionBegin; 1889eb91f321SVaclav Hapla PetscValidHeaderSpecific(newMat, MAT_CLASSID, 1); 1890eb91f321SVaclav Hapla PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 1891eb91f321SVaclav Hapla /* force binary viewer to load .info file if it has not yet done so */ 18929566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 18939566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 189487d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 18959566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 189687d5ce66SSatish Balay #endif 1897eb91f321SVaclav Hapla if (isbinary) { 18989566063dSJacob Faibussowitsch PetscCall(MatLoad_Dense_Binary(newMat, viewer)); 1899eb91f321SVaclav Hapla #if defined(PETSC_HAVE_HDF5) 190087d5ce66SSatish Balay } else if (ishdf5) { 19019566063dSJacob Faibussowitsch PetscCall(MatLoad_Dense_HDF5(newMat, viewer)); 1902eb91f321SVaclav Hapla #endif 190398921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)newMat)->type_name); 19043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1905eb91f321SVaclav Hapla } 1906eb91f321SVaclav Hapla 1907d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatEqual_MPIDense(Mat A, Mat B, PetscBool *flag) 1908d71ae5a4SJacob Faibussowitsch { 19096e4ee0c6SHong Zhang Mat_MPIDense *matB = (Mat_MPIDense *)B->data, *matA = (Mat_MPIDense *)A->data; 19106e4ee0c6SHong Zhang Mat a, b; 191190ace30eSBarry Smith 19126e4ee0c6SHong Zhang PetscFunctionBegin; 19136e4ee0c6SHong Zhang a = matA->A; 19146e4ee0c6SHong Zhang b = matB->A; 19152cf15c64SPierre Jolivet PetscCall(MatEqual(a, b, flag)); 19162cf15c64SPierre Jolivet PetscCall(MPIU_Allreduce(MPI_IN_PLACE, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 19173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 19186e4ee0c6SHong Zhang } 191990ace30eSBarry Smith 1920d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDestroy_MatTransMatMult_MPIDense_MPIDense(void *data) 1921d71ae5a4SJacob Faibussowitsch { 19226718818eSStefano Zampini Mat_TransMatMultDense *atb = (Mat_TransMatMultDense *)data; 1923baa3c1c6SHong Zhang 1924baa3c1c6SHong Zhang PetscFunctionBegin; 19259566063dSJacob Faibussowitsch PetscCall(PetscFree2(atb->sendbuf, atb->recvcounts)); 19269566063dSJacob Faibussowitsch PetscCall(MatDestroy(&atb->atb)); 19279566063dSJacob Faibussowitsch PetscCall(PetscFree(atb)); 19283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1929baa3c1c6SHong Zhang } 1930baa3c1c6SHong Zhang 1931d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDestroy_MatMatTransMult_MPIDense_MPIDense(void *data) 1932d71ae5a4SJacob Faibussowitsch { 19336718818eSStefano Zampini Mat_MatTransMultDense *abt = (Mat_MatTransMultDense *)data; 1934cc48ffa7SToby Isaac 1935cc48ffa7SToby Isaac PetscFunctionBegin; 19369566063dSJacob Faibussowitsch PetscCall(PetscFree2(abt->buf[0], abt->buf[1])); 19379566063dSJacob Faibussowitsch PetscCall(PetscFree2(abt->recvcounts, abt->recvdispls)); 19389566063dSJacob Faibussowitsch PetscCall(PetscFree(abt)); 19393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1940cc48ffa7SToby Isaac } 1941cc48ffa7SToby Isaac 1942d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat A, Mat B, Mat C) 1943d71ae5a4SJacob Faibussowitsch { 1944baa3c1c6SHong Zhang Mat_MPIDense *a = (Mat_MPIDense *)A->data, *b = (Mat_MPIDense *)B->data, *c = (Mat_MPIDense *)C->data; 19456718818eSStefano Zampini Mat_TransMatMultDense *atb; 1946cb20be35SHong Zhang MPI_Comm comm; 19476718818eSStefano Zampini PetscMPIInt size, *recvcounts; 19486718818eSStefano Zampini PetscScalar *carray, *sendbuf; 1949637a0070SStefano Zampini const PetscScalar *atbarray; 1950a1f9a5e6SStefano Zampini PetscInt i, cN = C->cmap->N, proc, k, j, lda; 1951e68c0b26SHong Zhang const PetscInt *ranges; 1952cb20be35SHong Zhang 1953cb20be35SHong Zhang PetscFunctionBegin; 19546718818eSStefano Zampini MatCheckProduct(C, 3); 19555f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 19566718818eSStefano Zampini atb = (Mat_TransMatMultDense *)C->product->data; 19576718818eSStefano Zampini recvcounts = atb->recvcounts; 19586718818eSStefano Zampini sendbuf = atb->sendbuf; 19596718818eSStefano Zampini 19609566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 19619566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 1962e68c0b26SHong Zhang 1963c5ef1628SHong Zhang /* compute atbarray = aseq^T * bseq */ 19649566063dSJacob Faibussowitsch PetscCall(MatTransposeMatMult(a->A, b->A, atb->atb ? MAT_REUSE_MATRIX : MAT_INITIAL_MATRIX, PETSC_DEFAULT, &atb->atb)); 1965cb20be35SHong Zhang 19669566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRanges(C, &ranges)); 1967cb20be35SHong Zhang 1968660d5466SHong Zhang /* arrange atbarray into sendbuf */ 19699566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(atb->atb, &atbarray)); 19709566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(atb->atb, &lda)); 1971637a0070SStefano Zampini for (proc = 0, k = 0; proc < size; proc++) { 1972baa3c1c6SHong Zhang for (j = 0; j < cN; j++) { 1973a1f9a5e6SStefano Zampini for (i = ranges[proc]; i < ranges[proc + 1]; i++) sendbuf[k++] = atbarray[i + j * lda]; 1974cb20be35SHong Zhang } 1975cb20be35SHong Zhang } 19769566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(atb->atb, &atbarray)); 1977637a0070SStefano Zampini 1978c5ef1628SHong Zhang /* sum all atbarray to local values of C */ 19799566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(c->A, &carray)); 19809566063dSJacob Faibussowitsch PetscCallMPI(MPI_Reduce_scatter(sendbuf, carray, recvcounts, MPIU_SCALAR, MPIU_SUM, comm)); 19819566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(c->A, &carray)); 19829566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 19839566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 19843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1985cb20be35SHong Zhang } 1986cb20be35SHong Zhang 1987d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat A, Mat B, PetscReal fill, Mat C) 1988d71ae5a4SJacob Faibussowitsch { 1989cb20be35SHong Zhang MPI_Comm comm; 1990baa3c1c6SHong Zhang PetscMPIInt size; 1991660d5466SHong Zhang PetscInt cm = A->cmap->n, cM, cN = B->cmap->N; 1992baa3c1c6SHong Zhang Mat_TransMatMultDense *atb; 199347d993e7Ssuyashtn PetscBool cisdense = PETSC_FALSE; 19940acaeb71SStefano Zampini PetscInt i; 19950acaeb71SStefano Zampini const PetscInt *ranges; 1996cb20be35SHong Zhang 1997cb20be35SHong Zhang PetscFunctionBegin; 19988f83a4d9SJacob Faibussowitsch MatCheckProduct(C, 4); 19995f80ce2aSJacob Faibussowitsch PetscCheck(!C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty"); 20009566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 2001cb20be35SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) { 200298921bdaSJacob Faibussowitsch SETERRQ(comm, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != B (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->rstart, A->rmap->rend, B->rmap->rstart, B->rmap->rend); 2003cb20be35SHong Zhang } 2004cb20be35SHong Zhang 20054222ddf1SHong Zhang /* create matrix product C */ 20069566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, cm, B->cmap->n, A->cmap->N, B->cmap->N)); 200747d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) 20089566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATMPIDENSE, MATMPIDENSECUDA, "")); 200947d993e7Ssuyashtn #endif 201047d993e7Ssuyashtn #if defined(PETSC_HAVE_HIP) 201147d993e7Ssuyashtn PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATMPIDENSE, MATMPIDENSEHIP, "")); 201247d993e7Ssuyashtn #endif 201348a46eb9SPierre Jolivet if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)A)->type_name)); 20149566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 2015baa3c1c6SHong Zhang 20164222ddf1SHong Zhang /* create data structure for reuse C */ 20179566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 20189566063dSJacob Faibussowitsch PetscCall(PetscNew(&atb)); 20194222ddf1SHong Zhang cM = C->rmap->N; 20209566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(cM * cN, &atb->sendbuf, size, &atb->recvcounts)); 20219566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRanges(C, &ranges)); 20220acaeb71SStefano Zampini for (i = 0; i < size; i++) atb->recvcounts[i] = (ranges[i + 1] - ranges[i]) * cN; 2023baa3c1c6SHong Zhang 20246718818eSStefano Zampini C->product->data = atb; 20256718818eSStefano Zampini C->product->destroy = MatDestroy_MatTransMatMult_MPIDense_MPIDense; 20263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2027cb20be35SHong Zhang } 2028cb20be35SHong Zhang 2029d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat A, Mat B, PetscReal fill, Mat C) 2030d71ae5a4SJacob Faibussowitsch { 2031cc48ffa7SToby Isaac MPI_Comm comm; 2032cc48ffa7SToby Isaac PetscMPIInt i, size; 2033cc48ffa7SToby Isaac PetscInt maxRows, bufsiz; 2034cc48ffa7SToby Isaac PetscMPIInt tag; 20354222ddf1SHong Zhang PetscInt alg; 2036cc48ffa7SToby Isaac Mat_MatTransMultDense *abt; 20374222ddf1SHong Zhang Mat_Product *product = C->product; 20384222ddf1SHong Zhang PetscBool flg; 2039cc48ffa7SToby Isaac 2040cc48ffa7SToby Isaac PetscFunctionBegin; 20416718818eSStefano Zampini MatCheckProduct(C, 4); 20425f80ce2aSJacob Faibussowitsch PetscCheck(!C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty"); 20434222ddf1SHong Zhang /* check local size of A and B */ 20445f80ce2aSJacob Faibussowitsch PetscCheck(A->cmap->n == B->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local column dimensions are incompatible, A (%" PetscInt_FMT ") != B (%" PetscInt_FMT ")", A->cmap->n, B->cmap->n); 2045cc48ffa7SToby Isaac 20469566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg, "allgatherv", &flg)); 2047637a0070SStefano Zampini alg = flg ? 0 : 1; 2048cc48ffa7SToby Isaac 20494222ddf1SHong Zhang /* setup matrix product C */ 20509566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, A->rmap->n, B->rmap->n, A->rmap->N, B->rmap->N)); 20519566063dSJacob Faibussowitsch PetscCall(MatSetType(C, MATMPIDENSE)); 20529566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 20539566063dSJacob Faibussowitsch PetscCall(PetscObjectGetNewTag((PetscObject)C, &tag)); 20544222ddf1SHong Zhang 20554222ddf1SHong Zhang /* create data structure for reuse C */ 20569566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C, &comm)); 20579566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 20589566063dSJacob Faibussowitsch PetscCall(PetscNew(&abt)); 2059cc48ffa7SToby Isaac abt->tag = tag; 2060faa55883SToby Isaac abt->alg = alg; 2061faa55883SToby Isaac switch (alg) { 20624222ddf1SHong Zhang case 1: /* alg: "cyclic" */ 2063cc48ffa7SToby Isaac for (maxRows = 0, i = 0; i < size; i++) maxRows = PetscMax(maxRows, (B->rmap->range[i + 1] - B->rmap->range[i])); 2064cc48ffa7SToby Isaac bufsiz = A->cmap->N * maxRows; 20659566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(bufsiz, &(abt->buf[0]), bufsiz, &(abt->buf[1]))); 2066faa55883SToby Isaac break; 20674222ddf1SHong Zhang default: /* alg: "allgatherv" */ 20689566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(B->rmap->n * B->cmap->N, &(abt->buf[0]), B->rmap->N * B->cmap->N, &(abt->buf[1]))); 20699566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(size, &(abt->recvcounts), size + 1, &(abt->recvdispls))); 2070faa55883SToby Isaac for (i = 0; i <= size; i++) abt->recvdispls[i] = B->rmap->range[i] * A->cmap->N; 2071faa55883SToby Isaac for (i = 0; i < size; i++) abt->recvcounts[i] = abt->recvdispls[i + 1] - abt->recvdispls[i]; 2072faa55883SToby Isaac break; 2073faa55883SToby Isaac } 2074cc48ffa7SToby Isaac 20756718818eSStefano Zampini C->product->data = abt; 20766718818eSStefano Zampini C->product->destroy = MatDestroy_MatMatTransMult_MPIDense_MPIDense; 20774222ddf1SHong Zhang C->ops->mattransposemultnumeric = MatMatTransposeMultNumeric_MPIDense_MPIDense; 20783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2079cc48ffa7SToby Isaac } 2080cc48ffa7SToby Isaac 2081d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(Mat A, Mat B, Mat C) 2082d71ae5a4SJacob Faibussowitsch { 2083cc48ffa7SToby Isaac Mat_MPIDense *a = (Mat_MPIDense *)A->data, *b = (Mat_MPIDense *)B->data, *c = (Mat_MPIDense *)C->data; 20846718818eSStefano Zampini Mat_MatTransMultDense *abt; 2085cc48ffa7SToby Isaac MPI_Comm comm; 2086cc48ffa7SToby Isaac PetscMPIInt rank, size, sendsiz, recvsiz, sendto, recvfrom, recvisfrom; 2087f4259b30SLisandro Dalcin PetscScalar *sendbuf, *recvbuf = NULL, *cv; 2088cc48ffa7SToby Isaac PetscInt i, cK = A->cmap->N, k, j, bn; 2089cc48ffa7SToby Isaac PetscScalar _DOne = 1.0, _DZero = 0.0; 2090637a0070SStefano Zampini const PetscScalar *av, *bv; 209123fff9afSBarry Smith PetscBLASInt cm, cn, ck, alda, blda = 0, clda; 2092cc48ffa7SToby Isaac MPI_Request reqs[2]; 2093cc48ffa7SToby Isaac const PetscInt *ranges; 2094cc48ffa7SToby Isaac 2095cc48ffa7SToby Isaac PetscFunctionBegin; 20966718818eSStefano Zampini MatCheckProduct(C, 3); 20975f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 20986718818eSStefano Zampini abt = (Mat_MatTransMultDense *)C->product->data; 20999566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C, &comm)); 21009566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 21019566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 21029566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A, &av)); 21039566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(b->A, &bv)); 21049566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(c->A, &cv)); 21059566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &i)); 21069566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i, &alda)); 21079566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(b->A, &i)); 21089566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i, &blda)); 21099566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(c->A, &i)); 21109566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i, &clda)); 21119566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRanges(B, &ranges)); 2112cc48ffa7SToby Isaac bn = B->rmap->n; 2113637a0070SStefano Zampini if (blda == bn) { 2114637a0070SStefano Zampini sendbuf = (PetscScalar *)bv; 2115cc48ffa7SToby Isaac } else { 2116cc48ffa7SToby Isaac sendbuf = abt->buf[0]; 2117cc48ffa7SToby Isaac for (k = 0, i = 0; i < cK; i++) { 2118ad540459SPierre Jolivet for (j = 0; j < bn; j++, k++) sendbuf[k] = bv[i * blda + j]; 2119cc48ffa7SToby Isaac } 2120cc48ffa7SToby Isaac } 2121cc48ffa7SToby Isaac if (size > 1) { 2122cc48ffa7SToby Isaac sendto = (rank + size - 1) % size; 2123cc48ffa7SToby Isaac recvfrom = (rank + size + 1) % size; 2124cc48ffa7SToby Isaac } else { 2125cc48ffa7SToby Isaac sendto = recvfrom = 0; 2126cc48ffa7SToby Isaac } 21279566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(cK, &ck)); 21289566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(c->A->rmap->n, &cm)); 2129cc48ffa7SToby Isaac recvisfrom = rank; 2130cc48ffa7SToby Isaac for (i = 0; i < size; i++) { 2131cc48ffa7SToby Isaac /* we have finished receiving in sending, bufs can be read/modified */ 2132cc48ffa7SToby Isaac PetscInt nextrecvisfrom = (recvisfrom + 1) % size; /* which process the next recvbuf will originate on */ 2133cc48ffa7SToby Isaac PetscInt nextbn = ranges[nextrecvisfrom + 1] - ranges[nextrecvisfrom]; 2134cc48ffa7SToby Isaac 2135cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2136cc48ffa7SToby Isaac /* start the cyclic sends from sendbuf, to recvbuf (which will switch to sendbuf) */ 2137cc48ffa7SToby Isaac sendsiz = cK * bn; 2138cc48ffa7SToby Isaac recvsiz = cK * nextbn; 2139cc48ffa7SToby Isaac recvbuf = (i & 1) ? abt->buf[0] : abt->buf[1]; 21409566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(sendbuf, sendsiz, MPIU_SCALAR, sendto, abt->tag, comm, &reqs[0])); 21419566063dSJacob Faibussowitsch PetscCallMPI(MPI_Irecv(recvbuf, recvsiz, MPIU_SCALAR, recvfrom, abt->tag, comm, &reqs[1])); 2142cc48ffa7SToby Isaac } 2143cc48ffa7SToby Isaac 2144cc48ffa7SToby Isaac /* local aseq * sendbuf^T */ 21459566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(ranges[recvisfrom + 1] - ranges[recvisfrom], &cn)); 2146792fecdfSBarry Smith if (cm && cn && ck) PetscCallBLAS("BLASgemm", BLASgemm_("N", "T", &cm, &cn, &ck, &_DOne, av, &alda, sendbuf, &cn, &_DZero, cv + clda * ranges[recvisfrom], &clda)); 2147cc48ffa7SToby Isaac 2148cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2149cc48ffa7SToby Isaac /* wait for the sends and receives to complete, swap sendbuf and recvbuf */ 21509566063dSJacob Faibussowitsch PetscCallMPI(MPI_Waitall(2, reqs, MPI_STATUSES_IGNORE)); 2151cc48ffa7SToby Isaac } 2152cc48ffa7SToby Isaac bn = nextbn; 2153cc48ffa7SToby Isaac recvisfrom = nextrecvisfrom; 2154cc48ffa7SToby Isaac sendbuf = recvbuf; 2155cc48ffa7SToby Isaac } 21569566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A, &av)); 21579566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(b->A, &bv)); 21589566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(c->A, &cv)); 21599566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 21609566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 21613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2162cc48ffa7SToby Isaac } 2163cc48ffa7SToby Isaac 2164d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(Mat A, Mat B, Mat C) 2165d71ae5a4SJacob Faibussowitsch { 2166faa55883SToby Isaac Mat_MPIDense *a = (Mat_MPIDense *)A->data, *b = (Mat_MPIDense *)B->data, *c = (Mat_MPIDense *)C->data; 21676718818eSStefano Zampini Mat_MatTransMultDense *abt; 2168faa55883SToby Isaac MPI_Comm comm; 2169637a0070SStefano Zampini PetscMPIInt size; 2170637a0070SStefano Zampini PetscScalar *cv, *sendbuf, *recvbuf; 2171637a0070SStefano Zampini const PetscScalar *av, *bv; 2172637a0070SStefano Zampini PetscInt blda, i, cK = A->cmap->N, k, j, bn; 2173faa55883SToby Isaac PetscScalar _DOne = 1.0, _DZero = 0.0; 2174637a0070SStefano Zampini PetscBLASInt cm, cn, ck, alda, clda; 2175faa55883SToby Isaac 2176faa55883SToby Isaac PetscFunctionBegin; 21776718818eSStefano Zampini MatCheckProduct(C, 3); 21785f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 21796718818eSStefano Zampini abt = (Mat_MatTransMultDense *)C->product->data; 21809566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 21819566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 21829566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A, &av)); 21839566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(b->A, &bv)); 21849566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(c->A, &cv)); 21859566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &i)); 21869566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i, &alda)); 21879566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(b->A, &blda)); 21889566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(c->A, &i)); 21899566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i, &clda)); 2190faa55883SToby Isaac /* copy transpose of B into buf[0] */ 2191faa55883SToby Isaac bn = B->rmap->n; 2192faa55883SToby Isaac sendbuf = abt->buf[0]; 2193faa55883SToby Isaac recvbuf = abt->buf[1]; 2194faa55883SToby Isaac for (k = 0, j = 0; j < bn; j++) { 2195ad540459SPierre Jolivet for (i = 0; i < cK; i++, k++) sendbuf[k] = bv[i * blda + j]; 2196faa55883SToby Isaac } 21979566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(b->A, &bv)); 21989566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgatherv(sendbuf, bn * cK, MPIU_SCALAR, recvbuf, abt->recvcounts, abt->recvdispls, MPIU_SCALAR, comm)); 21999566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(cK, &ck)); 22009566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(c->A->rmap->n, &cm)); 22019566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(c->A->cmap->n, &cn)); 2202792fecdfSBarry Smith if (cm && cn && ck) PetscCallBLAS("BLASgemm", BLASgemm_("N", "N", &cm, &cn, &ck, &_DOne, av, &alda, recvbuf, &ck, &_DZero, cv, &clda)); 22039566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A, &av)); 22049566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(b->A, &bv)); 22059566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(c->A, &cv)); 22069566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 22079566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 22083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2209faa55883SToby Isaac } 2210faa55883SToby Isaac 2211d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat A, Mat B, Mat C) 2212d71ae5a4SJacob Faibussowitsch { 22136718818eSStefano Zampini Mat_MatTransMultDense *abt; 2214faa55883SToby Isaac 2215faa55883SToby Isaac PetscFunctionBegin; 22166718818eSStefano Zampini MatCheckProduct(C, 3); 22175f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 22186718818eSStefano Zampini abt = (Mat_MatTransMultDense *)C->product->data; 2219faa55883SToby Isaac switch (abt->alg) { 2220d71ae5a4SJacob Faibussowitsch case 1: 2221d71ae5a4SJacob Faibussowitsch PetscCall(MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(A, B, C)); 2222d71ae5a4SJacob Faibussowitsch break; 2223d71ae5a4SJacob Faibussowitsch default: 2224d71ae5a4SJacob Faibussowitsch PetscCall(MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(A, B, C)); 2225d71ae5a4SJacob Faibussowitsch break; 2226faa55883SToby Isaac } 22273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2228faa55883SToby Isaac } 2229faa55883SToby Isaac 2230d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDestroy_MatMatMult_MPIDense_MPIDense(void *data) 2231d71ae5a4SJacob Faibussowitsch { 22326718818eSStefano Zampini Mat_MatMultDense *ab = (Mat_MatMultDense *)data; 2233320f2790SHong Zhang 2234320f2790SHong Zhang PetscFunctionBegin; 22359566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ab->Ce)); 22369566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ab->Ae)); 22379566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ab->Be)); 22389566063dSJacob Faibussowitsch PetscCall(PetscFree(ab)); 22393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2240320f2790SHong Zhang } 2241320f2790SHong Zhang 22425242a7b1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 2243d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultNumeric_MPIDense_MPIDense(Mat A, Mat B, Mat C) 2244d71ae5a4SJacob Faibussowitsch { 22456718818eSStefano Zampini Mat_MatMultDense *ab; 2246320f2790SHong Zhang 2247320f2790SHong Zhang PetscFunctionBegin; 22486718818eSStefano Zampini MatCheckProduct(C, 3); 22495f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Missing product data"); 22506718818eSStefano Zampini ab = (Mat_MatMultDense *)C->product->data; 22519566063dSJacob Faibussowitsch PetscCall(MatConvert_MPIDense_Elemental(A, MATELEMENTAL, MAT_REUSE_MATRIX, &ab->Ae)); 22529566063dSJacob Faibussowitsch PetscCall(MatConvert_MPIDense_Elemental(B, MATELEMENTAL, MAT_REUSE_MATRIX, &ab->Be)); 22539566063dSJacob Faibussowitsch PetscCall(MatMatMultNumeric_Elemental(ab->Ae, ab->Be, ab->Ce)); 22549566063dSJacob Faibussowitsch PetscCall(MatConvert(ab->Ce, MATMPIDENSE, MAT_REUSE_MATRIX, &C)); 22553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2256320f2790SHong Zhang } 2257320f2790SHong Zhang 2258d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIDense(Mat A, Mat B, PetscReal fill, Mat C) 2259d71ae5a4SJacob Faibussowitsch { 2260320f2790SHong Zhang Mat Ae, Be, Ce; 2261320f2790SHong Zhang Mat_MatMultDense *ab; 2262320f2790SHong Zhang 2263320f2790SHong Zhang PetscFunctionBegin; 22646718818eSStefano Zampini MatCheckProduct(C, 4); 22655f80ce2aSJacob Faibussowitsch PetscCheck(!C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty"); 22664222ddf1SHong Zhang /* check local size of A and B */ 2267320f2790SHong Zhang if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend) { 226898921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != B (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->rstart, A->rmap->rend, B->rmap->rstart, B->rmap->rend); 2269320f2790SHong Zhang } 2270320f2790SHong Zhang 22714222ddf1SHong Zhang /* create elemental matrices Ae and Be */ 22729566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &Ae)); 22739566063dSJacob Faibussowitsch PetscCall(MatSetSizes(Ae, PETSC_DECIDE, PETSC_DECIDE, A->rmap->N, A->cmap->N)); 22749566063dSJacob Faibussowitsch PetscCall(MatSetType(Ae, MATELEMENTAL)); 22759566063dSJacob Faibussowitsch PetscCall(MatSetUp(Ae)); 22769566063dSJacob Faibussowitsch PetscCall(MatSetOption(Ae, MAT_ROW_ORIENTED, PETSC_FALSE)); 2277320f2790SHong Zhang 22789566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)B), &Be)); 22799566063dSJacob Faibussowitsch PetscCall(MatSetSizes(Be, PETSC_DECIDE, PETSC_DECIDE, B->rmap->N, B->cmap->N)); 22809566063dSJacob Faibussowitsch PetscCall(MatSetType(Be, MATELEMENTAL)); 22819566063dSJacob Faibussowitsch PetscCall(MatSetUp(Be)); 22829566063dSJacob Faibussowitsch PetscCall(MatSetOption(Be, MAT_ROW_ORIENTED, PETSC_FALSE)); 2283320f2790SHong Zhang 22844222ddf1SHong Zhang /* compute symbolic Ce = Ae*Be */ 22859566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)C), &Ce)); 22869566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_Elemental(Ae, Be, fill, Ce)); 22874222ddf1SHong Zhang 22884222ddf1SHong Zhang /* setup C */ 22899566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, A->rmap->n, B->cmap->n, PETSC_DECIDE, PETSC_DECIDE)); 22909566063dSJacob Faibussowitsch PetscCall(MatSetType(C, MATDENSE)); 22919566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 2292320f2790SHong Zhang 2293320f2790SHong Zhang /* create data structure for reuse Cdense */ 22949566063dSJacob Faibussowitsch PetscCall(PetscNew(&ab)); 2295320f2790SHong Zhang ab->Ae = Ae; 2296320f2790SHong Zhang ab->Be = Be; 2297320f2790SHong Zhang ab->Ce = Ce; 22986718818eSStefano Zampini 22996718818eSStefano Zampini C->product->data = ab; 23006718818eSStefano Zampini C->product->destroy = MatDestroy_MatMatMult_MPIDense_MPIDense; 23014222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIDense; 23023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2303320f2790SHong Zhang } 23044222ddf1SHong Zhang #endif 23052ef1f0ffSBarry Smith 23064222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 2307d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_AB(Mat C) 2308d71ae5a4SJacob Faibussowitsch { 2309320f2790SHong Zhang PetscFunctionBegin; 23104222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIDense; 23114222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 23123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2313320f2790SHong Zhang } 23145242a7b1SHong Zhang #endif 231586aefd0dSHong Zhang 2316d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_AtB(Mat C) 2317d71ae5a4SJacob Faibussowitsch { 23184222ddf1SHong Zhang Mat_Product *product = C->product; 23194222ddf1SHong Zhang Mat A = product->A, B = product->B; 23204222ddf1SHong Zhang 23214222ddf1SHong Zhang PetscFunctionBegin; 23224222ddf1SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) 232398921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->rstart, A->rmap->rend, B->rmap->rstart, B->rmap->rend); 23246718818eSStefano Zampini C->ops->transposematmultsymbolic = MatTransposeMatMultSymbolic_MPIDense_MPIDense; 23256718818eSStefano Zampini C->ops->productsymbolic = MatProductSymbolic_AtB; 23263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23274222ddf1SHong Zhang } 23284222ddf1SHong Zhang 2329d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_ABt(Mat C) 2330d71ae5a4SJacob Faibussowitsch { 23314222ddf1SHong Zhang Mat_Product *product = C->product; 23324222ddf1SHong Zhang const char *algTypes[2] = {"allgatherv", "cyclic"}; 23334222ddf1SHong Zhang PetscInt alg, nalg = 2; 23344222ddf1SHong Zhang PetscBool flg = PETSC_FALSE; 23354222ddf1SHong Zhang 23364222ddf1SHong Zhang PetscFunctionBegin; 23374222ddf1SHong Zhang /* Set default algorithm */ 23384222ddf1SHong Zhang alg = 0; /* default is allgatherv */ 23399566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg, "default", &flg)); 234048a46eb9SPierre Jolivet if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 23414222ddf1SHong Zhang 23424222ddf1SHong Zhang /* Get runtime option */ 23434222ddf1SHong Zhang if (product->api_user) { 2344d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatTransposeMult", "Mat"); 23459566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-matmattransmult_mpidense_mpidense_via", "Algorithmic approach", "MatMatTransposeMult", algTypes, nalg, algTypes[alg], &alg, &flg)); 2346d0609cedSBarry Smith PetscOptionsEnd(); 23474222ddf1SHong Zhang } else { 2348d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_ABt", "Mat"); 23499566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatProduct_ABt", algTypes, nalg, algTypes[alg], &alg, &flg)); 2350d0609cedSBarry Smith PetscOptionsEnd(); 23514222ddf1SHong Zhang } 235248a46eb9SPierre Jolivet if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 23534222ddf1SHong Zhang 23544222ddf1SHong Zhang C->ops->mattransposemultsymbolic = MatMatTransposeMultSymbolic_MPIDense_MPIDense; 23554222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_ABt; 23563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23574222ddf1SHong Zhang } 23584222ddf1SHong Zhang 2359d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense(Mat C) 2360d71ae5a4SJacob Faibussowitsch { 23614222ddf1SHong Zhang Mat_Product *product = C->product; 23624222ddf1SHong Zhang 23634222ddf1SHong Zhang PetscFunctionBegin; 23644222ddf1SHong Zhang switch (product->type) { 23654222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 2366d71ae5a4SJacob Faibussowitsch case MATPRODUCT_AB: 2367d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIDense_AB(C)); 2368d71ae5a4SJacob Faibussowitsch break; 23694222ddf1SHong Zhang #endif 2370d71ae5a4SJacob Faibussowitsch case MATPRODUCT_AtB: 2371d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIDense_AtB(C)); 2372d71ae5a4SJacob Faibussowitsch break; 2373d71ae5a4SJacob Faibussowitsch case MATPRODUCT_ABt: 2374d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIDense_ABt(C)); 2375d71ae5a4SJacob Faibussowitsch break; 2376d71ae5a4SJacob Faibussowitsch default: 2377d71ae5a4SJacob Faibussowitsch break; 23784222ddf1SHong Zhang } 23793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23804222ddf1SHong Zhang } 2381