xref: /petsc/src/mat/impls/dense/mpi/mpidense.c (revision 79b0a62de21de044427c1942db46c1b7385760ac)
1be1d678aSKris Buschelman #define PETSCMAT_DLL
2be1d678aSKris Buschelman 
3ed3cc1f0SBarry Smith /*
4ed3cc1f0SBarry Smith    Basic functions for basic parallel dense matrices.
5ed3cc1f0SBarry Smith */
6ed3cc1f0SBarry Smith 
704fea9ffSBarry Smith 
889ac3759SBarry Smith #include "src/mat/impls/dense/mpi/mpidense.h"    /*I   "petscmat.h"  I*/
9eae6fb2eSBarry Smith #if defined(PETSC_HAVE_PLAPACK)
10eae6fb2eSBarry Smith static PetscMPIInt Plapack_nprows,Plapack_npcols,Plapack_ierror,Plapack_nb_alg;
11eae6fb2eSBarry Smith static MPI_Comm Plapack_comm_2d;
12eae6fb2eSBarry Smith #endif
138965ea79SLois Curfman McInnes 
14ba8c8a56SBarry Smith #undef __FUNCT__
15ab92ecdeSBarry Smith #define __FUNCT__ "MatDenseGetLocalMatrix"
16ab92ecdeSBarry Smith /*@
17ab92ecdeSBarry Smith 
18ab92ecdeSBarry Smith       MatDenseGetLocalMatrix - For a MATMPIDENSE or MATSEQDENSE matrix returns the sequential
19ab92ecdeSBarry Smith               matrix that represents the operator. For sequential matrices it returns itself.
20ab92ecdeSBarry Smith 
21ab92ecdeSBarry Smith     Input Parameter:
22ab92ecdeSBarry Smith .      A - the Seq or MPI dense matrix
23ab92ecdeSBarry Smith 
24ab92ecdeSBarry Smith     Output Parameter:
25ab92ecdeSBarry Smith .      B - the inner matrix
26ab92ecdeSBarry Smith 
278e6c10adSSatish Balay     Level: intermediate
288e6c10adSSatish Balay 
29ab92ecdeSBarry Smith @*/
30ab92ecdeSBarry Smith PetscErrorCode MatDenseGetLocalMatrix(Mat A,Mat *B)
31ab92ecdeSBarry Smith {
32ab92ecdeSBarry Smith   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
33ab92ecdeSBarry Smith   PetscErrorCode ierr;
34ab92ecdeSBarry Smith   PetscTruth     flg;
35ab92ecdeSBarry Smith 
36ab92ecdeSBarry Smith   PetscFunctionBegin;
37ab92ecdeSBarry Smith   ierr = PetscTypeCompare((PetscObject)A,MATMPIDENSE,&flg);CHKERRQ(ierr);
38ab92ecdeSBarry Smith   if (flg) {
39ab92ecdeSBarry Smith     *B = mat->A;
40ab92ecdeSBarry Smith   } else {
41ab92ecdeSBarry Smith     *B = A;
42ab92ecdeSBarry Smith   }
43ab92ecdeSBarry Smith   PetscFunctionReturn(0);
44ab92ecdeSBarry Smith }
45ab92ecdeSBarry Smith 
46ab92ecdeSBarry Smith #undef __FUNCT__
47ba8c8a56SBarry Smith #define __FUNCT__ "MatGetRow_MPIDense"
48ba8c8a56SBarry Smith PetscErrorCode MatGetRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
49ba8c8a56SBarry Smith {
50ba8c8a56SBarry Smith   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
51ba8c8a56SBarry Smith   PetscErrorCode ierr;
52899cda47SBarry Smith   PetscInt       lrow,rstart = A->rmap.rstart,rend = A->rmap.rend;
53ba8c8a56SBarry Smith 
54ba8c8a56SBarry Smith   PetscFunctionBegin;
55ba8c8a56SBarry Smith   if (row < rstart || row >= rend) SETERRQ(PETSC_ERR_SUP,"only local rows")
56ba8c8a56SBarry Smith   lrow = row - rstart;
57ba8c8a56SBarry Smith   ierr = MatGetRow(mat->A,lrow,nz,(const PetscInt **)idx,(const PetscScalar **)v);CHKERRQ(ierr);
58ba8c8a56SBarry Smith   PetscFunctionReturn(0);
59ba8c8a56SBarry Smith }
60ba8c8a56SBarry Smith 
61ba8c8a56SBarry Smith #undef __FUNCT__
62ba8c8a56SBarry Smith #define __FUNCT__ "MatRestoreRow_MPIDense"
63ba8c8a56SBarry Smith PetscErrorCode MatRestoreRow_MPIDense(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
64ba8c8a56SBarry Smith {
65ba8c8a56SBarry Smith   PetscErrorCode ierr;
66ba8c8a56SBarry Smith 
67ba8c8a56SBarry Smith   PetscFunctionBegin;
68ba8c8a56SBarry Smith   if (idx) {ierr = PetscFree(*idx);CHKERRQ(ierr);}
69ba8c8a56SBarry Smith   if (v) {ierr = PetscFree(*v);CHKERRQ(ierr);}
70ba8c8a56SBarry Smith   PetscFunctionReturn(0);
71ba8c8a56SBarry Smith }
72ba8c8a56SBarry Smith 
730de54da6SSatish Balay EXTERN_C_BEGIN
744a2ae208SSatish Balay #undef __FUNCT__
754a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIDense"
76be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPIDense(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *B)
770de54da6SSatish Balay {
780de54da6SSatish Balay   Mat_MPIDense   *mdn = (Mat_MPIDense*)A->data;
796849ba73SBarry Smith   PetscErrorCode ierr;
80899cda47SBarry Smith   PetscInt       m = A->rmap.n,rstart = A->rmap.rstart;
8187828ca2SBarry Smith   PetscScalar    *array;
820de54da6SSatish Balay   MPI_Comm       comm;
830de54da6SSatish Balay 
840de54da6SSatish Balay   PetscFunctionBegin;
85899cda47SBarry Smith   if (A->rmap.N != A->cmap.N) SETERRQ(PETSC_ERR_SUP,"Only square matrices supported.");
860de54da6SSatish Balay 
870de54da6SSatish Balay   /* The reuse aspect is not implemented efficiently */
880de54da6SSatish Balay   if (reuse) { ierr = MatDestroy(*B);CHKERRQ(ierr);}
890de54da6SSatish Balay 
900de54da6SSatish Balay   ierr = PetscObjectGetComm((PetscObject)(mdn->A),&comm);CHKERRQ(ierr);
910de54da6SSatish Balay   ierr = MatGetArray(mdn->A,&array);CHKERRQ(ierr);
92f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,B);CHKERRQ(ierr);
93f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*B,m,m,m,m);CHKERRQ(ierr);
947adad957SLisandro Dalcin   ierr = MatSetType(*B,((PetscObject)mdn->A)->type_name);CHKERRQ(ierr);
955c5985e7SKris Buschelman   ierr = MatSeqDenseSetPreallocation(*B,array+m*rstart);CHKERRQ(ierr);
960de54da6SSatish Balay   ierr = MatRestoreArray(mdn->A,&array);CHKERRQ(ierr);
970de54da6SSatish Balay   ierr = MatAssemblyBegin(*B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
980de54da6SSatish Balay   ierr = MatAssemblyEnd(*B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
990de54da6SSatish Balay 
1000de54da6SSatish Balay   *iscopy = PETSC_TRUE;
1010de54da6SSatish Balay   PetscFunctionReturn(0);
1020de54da6SSatish Balay }
1030de54da6SSatish Balay EXTERN_C_END
1040de54da6SSatish Balay 
1054a2ae208SSatish Balay #undef __FUNCT__
1064a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIDense"
10713f74950SBarry Smith PetscErrorCode MatSetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],const PetscScalar v[],InsertMode addv)
1088965ea79SLois Curfman McInnes {
10939b7565bSBarry Smith   Mat_MPIDense   *A = (Mat_MPIDense*)mat->data;
110dfbe8321SBarry Smith   PetscErrorCode ierr;
111899cda47SBarry Smith   PetscInt       i,j,rstart = mat->rmap.rstart,rend = mat->rmap.rend,row;
112273d9f13SBarry Smith   PetscTruth     roworiented = A->roworiented;
1138965ea79SLois Curfman McInnes 
1143a40ed3dSBarry Smith   PetscFunctionBegin;
1158965ea79SLois Curfman McInnes   for (i=0; i<m; i++) {
1165ef9f2a5SBarry Smith     if (idxm[i] < 0) continue;
117899cda47SBarry Smith     if (idxm[i] >= mat->rmap.N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large");
1188965ea79SLois Curfman McInnes     if (idxm[i] >= rstart && idxm[i] < rend) {
1198965ea79SLois Curfman McInnes       row = idxm[i] - rstart;
12039b7565bSBarry Smith       if (roworiented) {
12139b7565bSBarry Smith         ierr = MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv);CHKERRQ(ierr);
1223a40ed3dSBarry Smith       } else {
1238965ea79SLois Curfman McInnes         for (j=0; j<n; j++) {
1245ef9f2a5SBarry Smith           if (idxn[j] < 0) continue;
125899cda47SBarry Smith           if (idxn[j] >= mat->cmap.N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Column too large");
12639b7565bSBarry Smith           ierr = MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv);CHKERRQ(ierr);
12739b7565bSBarry Smith         }
1288965ea79SLois Curfman McInnes       }
1293a40ed3dSBarry Smith     } else {
1303782ba37SSatish Balay       if (!A->donotstash) {
13139b7565bSBarry Smith         if (roworiented) {
1328798bf22SSatish Balay           ierr = MatStashValuesRow_Private(&mat->stash,idxm[i],n,idxn,v+i*n);CHKERRQ(ierr);
133d36fbae8SSatish Balay         } else {
1348798bf22SSatish Balay           ierr = MatStashValuesCol_Private(&mat->stash,idxm[i],n,idxn,v+i,m);CHKERRQ(ierr);
13539b7565bSBarry Smith         }
136b49de8d1SLois Curfman McInnes       }
137b49de8d1SLois Curfman McInnes     }
1383782ba37SSatish Balay   }
1393a40ed3dSBarry Smith   PetscFunctionReturn(0);
140b49de8d1SLois Curfman McInnes }
141b49de8d1SLois Curfman McInnes 
1424a2ae208SSatish Balay #undef __FUNCT__
1434a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIDense"
14413f74950SBarry Smith PetscErrorCode MatGetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
145b49de8d1SLois Curfman McInnes {
146b49de8d1SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
147dfbe8321SBarry Smith   PetscErrorCode ierr;
148899cda47SBarry Smith   PetscInt       i,j,rstart = mat->rmap.rstart,rend = mat->rmap.rend,row;
149b49de8d1SLois Curfman McInnes 
1503a40ed3dSBarry Smith   PetscFunctionBegin;
151b49de8d1SLois Curfman McInnes   for (i=0; i<m; i++) {
15297e567efSBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); */
153899cda47SBarry Smith     if (idxm[i] >= mat->rmap.N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large");
154b49de8d1SLois Curfman McInnes     if (idxm[i] >= rstart && idxm[i] < rend) {
155b49de8d1SLois Curfman McInnes       row = idxm[i] - rstart;
156b49de8d1SLois Curfman McInnes       for (j=0; j<n; j++) {
15797e567efSBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); */
158899cda47SBarry Smith         if (idxn[j] >= mat->cmap.N) {
15929bbc08cSBarry Smith           SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Column too large");
160a8c6a408SBarry Smith         }
161b49de8d1SLois Curfman McInnes         ierr = MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j);CHKERRQ(ierr);
162b49de8d1SLois Curfman McInnes       }
163a8c6a408SBarry Smith     } else {
16429bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Only local values currently supported");
1658965ea79SLois Curfman McInnes     }
1668965ea79SLois Curfman McInnes   }
1673a40ed3dSBarry Smith   PetscFunctionReturn(0);
1688965ea79SLois Curfman McInnes }
1698965ea79SLois Curfman McInnes 
1704a2ae208SSatish Balay #undef __FUNCT__
1714a2ae208SSatish Balay #define __FUNCT__ "MatGetArray_MPIDense"
172dfbe8321SBarry Smith PetscErrorCode MatGetArray_MPIDense(Mat A,PetscScalar *array[])
173ff14e315SSatish Balay {
174ff14e315SSatish Balay   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
175dfbe8321SBarry Smith   PetscErrorCode ierr;
176ff14e315SSatish Balay 
1773a40ed3dSBarry Smith   PetscFunctionBegin;
178ff14e315SSatish Balay   ierr = MatGetArray(a->A,array);CHKERRQ(ierr);
1793a40ed3dSBarry Smith   PetscFunctionReturn(0);
180ff14e315SSatish Balay }
181ff14e315SSatish Balay 
1824a2ae208SSatish Balay #undef __FUNCT__
1834a2ae208SSatish Balay #define __FUNCT__ "MatGetSubMatrix_MPIDense"
18413f74950SBarry Smith static PetscErrorCode MatGetSubMatrix_MPIDense(Mat A,IS isrow,IS iscol,PetscInt cs,MatReuse scall,Mat *B)
185ca3fa75bSLois Curfman McInnes {
186ca3fa75bSLois Curfman McInnes   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data,*newmatd;
187ca3fa75bSLois Curfman McInnes   Mat_SeqDense   *lmat = (Mat_SeqDense*)mat->A->data;
1886849ba73SBarry Smith   PetscErrorCode ierr;
18913f74950SBarry Smith   PetscInt       i,j,*irow,*icol,rstart,rend,nrows,ncols,nlrows,nlcols;
19087828ca2SBarry Smith   PetscScalar    *av,*bv,*v = lmat->v;
191ca3fa75bSLois Curfman McInnes   Mat            newmat;
192ca3fa75bSLois Curfman McInnes 
193ca3fa75bSLois Curfman McInnes   PetscFunctionBegin;
194ca3fa75bSLois Curfman McInnes   ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr);
195ca3fa75bSLois Curfman McInnes   ierr = ISGetIndices(iscol,&icol);CHKERRQ(ierr);
196b9b97703SBarry Smith   ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr);
197b9b97703SBarry Smith   ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr);
198ca3fa75bSLois Curfman McInnes 
199ca3fa75bSLois Curfman McInnes   /* No parallel redistribution currently supported! Should really check each index set
2007eba5e9cSLois Curfman McInnes      to comfirm that it is OK.  ... Currently supports only submatrix same partitioning as
2017eba5e9cSLois Curfman McInnes      original matrix! */
202ca3fa75bSLois Curfman McInnes 
203ca3fa75bSLois Curfman McInnes   ierr = MatGetLocalSize(A,&nlrows,&nlcols);CHKERRQ(ierr);
2047eba5e9cSLois Curfman McInnes   ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr);
205ca3fa75bSLois Curfman McInnes 
206ca3fa75bSLois Curfman McInnes   /* Check submatrix call */
207ca3fa75bSLois Curfman McInnes   if (scall == MAT_REUSE_MATRIX) {
20829bbc08cSBarry Smith     /* SETERRQ(PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */
2097eba5e9cSLois Curfman McInnes     /* Really need to test rows and column sizes! */
210ca3fa75bSLois Curfman McInnes     newmat = *B;
211ca3fa75bSLois Curfman McInnes   } else {
212ca3fa75bSLois Curfman McInnes     /* Create and fill new matrix */
2137adad957SLisandro Dalcin     ierr = MatCreate(((PetscObject)A)->comm,&newmat);CHKERRQ(ierr);
214f69a0ea3SMatthew Knepley     ierr = MatSetSizes(newmat,nrows,cs,PETSC_DECIDE,ncols);CHKERRQ(ierr);
2157adad957SLisandro Dalcin     ierr = MatSetType(newmat,((PetscObject)A)->type_name);CHKERRQ(ierr);
216878740d9SKris Buschelman     ierr = MatMPIDenseSetPreallocation(newmat,PETSC_NULL);CHKERRQ(ierr);
217ca3fa75bSLois Curfman McInnes   }
218ca3fa75bSLois Curfman McInnes 
219ca3fa75bSLois Curfman McInnes   /* Now extract the data pointers and do the copy, column at a time */
220ca3fa75bSLois Curfman McInnes   newmatd = (Mat_MPIDense*)newmat->data;
221ca3fa75bSLois Curfman McInnes   bv      = ((Mat_SeqDense *)newmatd->A->data)->v;
222ca3fa75bSLois Curfman McInnes 
223ca3fa75bSLois Curfman McInnes   for (i=0; i<ncols; i++) {
224ca3fa75bSLois Curfman McInnes     av = v + nlrows*icol[i];
225ca3fa75bSLois Curfman McInnes     for (j=0; j<nrows; j++) {
2267eba5e9cSLois Curfman McInnes       *bv++ = av[irow[j] - rstart];
227ca3fa75bSLois Curfman McInnes     }
228ca3fa75bSLois Curfman McInnes   }
229ca3fa75bSLois Curfman McInnes 
230ca3fa75bSLois Curfman McInnes   /* Assemble the matrices so that the correct flags are set */
231ca3fa75bSLois Curfman McInnes   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
232ca3fa75bSLois Curfman McInnes   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
233ca3fa75bSLois Curfman McInnes 
234ca3fa75bSLois Curfman McInnes   /* Free work space */
235ca3fa75bSLois Curfman McInnes   ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr);
236ca3fa75bSLois Curfman McInnes   ierr = ISRestoreIndices(iscol,&icol);CHKERRQ(ierr);
237ca3fa75bSLois Curfman McInnes   *B = newmat;
238ca3fa75bSLois Curfman McInnes   PetscFunctionReturn(0);
239ca3fa75bSLois Curfman McInnes }
240ca3fa75bSLois Curfman McInnes 
2414a2ae208SSatish Balay #undef __FUNCT__
2424a2ae208SSatish Balay #define __FUNCT__ "MatRestoreArray_MPIDense"
243dfbe8321SBarry Smith PetscErrorCode MatRestoreArray_MPIDense(Mat A,PetscScalar *array[])
244ff14e315SSatish Balay {
2453a40ed3dSBarry Smith   PetscFunctionBegin;
2463a40ed3dSBarry Smith   PetscFunctionReturn(0);
247ff14e315SSatish Balay }
248ff14e315SSatish Balay 
2494a2ae208SSatish Balay #undef __FUNCT__
2504a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIDense"
251dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode)
2528965ea79SLois Curfman McInnes {
25339ddd567SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
2547adad957SLisandro Dalcin   MPI_Comm       comm = ((PetscObject)mat)->comm;
255dfbe8321SBarry Smith   PetscErrorCode ierr;
25613f74950SBarry Smith   PetscInt       nstash,reallocs;
2578965ea79SLois Curfman McInnes   InsertMode     addv;
2588965ea79SLois Curfman McInnes 
2593a40ed3dSBarry Smith   PetscFunctionBegin;
2608965ea79SLois Curfman McInnes   /* make sure all processors are either in INSERTMODE or ADDMODE */
261ca161407SBarry Smith   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,comm);CHKERRQ(ierr);
2627056b6fcSBarry Smith   if (addv == (ADD_VALUES|INSERT_VALUES)) {
26329bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Cannot mix adds/inserts on different procs");
2648965ea79SLois Curfman McInnes   }
265e0fa3b82SLois Curfman McInnes   mat->insertmode = addv; /* in case this processor had no cache */
2668965ea79SLois Curfman McInnes 
2671e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap.range);CHKERRQ(ierr);
2688798bf22SSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
269ae15b995SBarry Smith   ierr = PetscInfo2(mdn->A,"Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
2703a40ed3dSBarry Smith   PetscFunctionReturn(0);
2718965ea79SLois Curfman McInnes }
2728965ea79SLois Curfman McInnes 
2734a2ae208SSatish Balay #undef __FUNCT__
2744a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIDense"
275dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode)
2768965ea79SLois Curfman McInnes {
27739ddd567SLois Curfman McInnes   Mat_MPIDense    *mdn=(Mat_MPIDense*)mat->data;
2786849ba73SBarry Smith   PetscErrorCode  ierr;
27913f74950SBarry Smith   PetscInt        i,*row,*col,flg,j,rstart,ncols;
28013f74950SBarry Smith   PetscMPIInt     n;
28187828ca2SBarry Smith   PetscScalar     *val;
282e0fa3b82SLois Curfman McInnes   InsertMode      addv=mat->insertmode;
2838965ea79SLois Curfman McInnes 
2843a40ed3dSBarry Smith   PetscFunctionBegin;
2858965ea79SLois Curfman McInnes   /*  wait on receives */
2867ef1d9bdSSatish Balay   while (1) {
2878798bf22SSatish Balay     ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
2887ef1d9bdSSatish Balay     if (!flg) break;
2898965ea79SLois Curfman McInnes 
2907ef1d9bdSSatish Balay     for (i=0; i<n;) {
2917ef1d9bdSSatish Balay       /* Now identify the consecutive vals belonging to the same row */
2927ef1d9bdSSatish Balay       for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
2937ef1d9bdSSatish Balay       if (j < n) ncols = j-i;
2947ef1d9bdSSatish Balay       else       ncols = n-i;
2957ef1d9bdSSatish Balay       /* Now assemble all these values with a single function call */
2967ef1d9bdSSatish Balay       ierr = MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
2977ef1d9bdSSatish Balay       i = j;
2988965ea79SLois Curfman McInnes     }
2997ef1d9bdSSatish Balay   }
3008798bf22SSatish Balay   ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
3018965ea79SLois Curfman McInnes 
30239ddd567SLois Curfman McInnes   ierr = MatAssemblyBegin(mdn->A,mode);CHKERRQ(ierr);
30339ddd567SLois Curfman McInnes   ierr = MatAssemblyEnd(mdn->A,mode);CHKERRQ(ierr);
3048965ea79SLois Curfman McInnes 
3056d4a8577SBarry Smith   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
30639ddd567SLois Curfman McInnes     ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr);
3078965ea79SLois Curfman McInnes   }
3083a40ed3dSBarry Smith   PetscFunctionReturn(0);
3098965ea79SLois Curfman McInnes }
3108965ea79SLois Curfman McInnes 
3114a2ae208SSatish Balay #undef __FUNCT__
3124a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIDense"
313dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIDense(Mat A)
3148965ea79SLois Curfman McInnes {
315dfbe8321SBarry Smith   PetscErrorCode ierr;
31639ddd567SLois Curfman McInnes   Mat_MPIDense   *l = (Mat_MPIDense*)A->data;
3173a40ed3dSBarry Smith 
3183a40ed3dSBarry Smith   PetscFunctionBegin;
3193a40ed3dSBarry Smith   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
3203a40ed3dSBarry Smith   PetscFunctionReturn(0);
3218965ea79SLois Curfman McInnes }
3228965ea79SLois Curfman McInnes 
3238965ea79SLois Curfman McInnes /* the code does not do the diagonal entries correctly unless the
3248965ea79SLois Curfman McInnes    matrix is square and the column and row owerships are identical.
3258965ea79SLois Curfman McInnes    This is a BUG. The only way to fix it seems to be to access
3263501a2bdSLois Curfman McInnes    mdn->A and mdn->B directly and not through the MatZeroRows()
3278965ea79SLois Curfman McInnes    routine.
3288965ea79SLois Curfman McInnes */
3294a2ae208SSatish Balay #undef __FUNCT__
3304a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIDense"
331f4df32b1SMatthew Knepley PetscErrorCode MatZeroRows_MPIDense(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag)
3328965ea79SLois Curfman McInnes {
33339ddd567SLois Curfman McInnes   Mat_MPIDense   *l = (Mat_MPIDense*)A->data;
3346849ba73SBarry Smith   PetscErrorCode ierr;
335899cda47SBarry Smith   PetscInt       i,*owners = A->rmap.range;
33613f74950SBarry Smith   PetscInt       *nprocs,j,idx,nsends;
33713f74950SBarry Smith   PetscInt       nmax,*svalues,*starts,*owner,nrecvs;
3387adad957SLisandro Dalcin   PetscInt       *rvalues,tag = ((PetscObject)A)->tag,count,base,slen,*source;
33913f74950SBarry Smith   PetscInt       *lens,*lrows,*values;
34013f74950SBarry Smith   PetscMPIInt    n,imdex,rank = l->rank,size = l->size;
3417adad957SLisandro Dalcin   MPI_Comm       comm = ((PetscObject)A)->comm;
3428965ea79SLois Curfman McInnes   MPI_Request    *send_waits,*recv_waits;
3438965ea79SLois Curfman McInnes   MPI_Status     recv_status,*send_status;
34435d8aa7fSBarry Smith   PetscTruth     found;
3458965ea79SLois Curfman McInnes 
3463a40ed3dSBarry Smith   PetscFunctionBegin;
3478965ea79SLois Curfman McInnes   /*  first count number of contributors to each processor */
34813f74950SBarry Smith   ierr  = PetscMalloc(2*size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr);
34913f74950SBarry Smith   ierr  = PetscMemzero(nprocs,2*size*sizeof(PetscInt));CHKERRQ(ierr);
35013f74950SBarry Smith   ierr  = PetscMalloc((N+1)*sizeof(PetscInt),&owner);CHKERRQ(ierr); /* see note*/
3518965ea79SLois Curfman McInnes   for (i=0; i<N; i++) {
3528965ea79SLois Curfman McInnes     idx = rows[i];
35335d8aa7fSBarry Smith     found = PETSC_FALSE;
3548965ea79SLois Curfman McInnes     for (j=0; j<size; j++) {
3558965ea79SLois Curfman McInnes       if (idx >= owners[j] && idx < owners[j+1]) {
356c1dc657dSBarry Smith         nprocs[2*j]++; nprocs[2*j+1] = 1; owner[i] = j; found = PETSC_TRUE; break;
3578965ea79SLois Curfman McInnes       }
3588965ea79SLois Curfman McInnes     }
35929bbc08cSBarry Smith     if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range");
3608965ea79SLois Curfman McInnes   }
361c1dc657dSBarry Smith   nsends = 0;  for (i=0; i<size; i++) { nsends += nprocs[2*i+1];}
3628965ea79SLois Curfman McInnes 
3638965ea79SLois Curfman McInnes   /* inform other processors of number of messages and max length*/
364c1dc657dSBarry Smith   ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr);
3658965ea79SLois Curfman McInnes 
3668965ea79SLois Curfman McInnes   /* post receives:   */
36713f74950SBarry Smith   ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(PetscInt),&rvalues);CHKERRQ(ierr);
368b0a32e0cSBarry Smith   ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr);
3698965ea79SLois Curfman McInnes   for (i=0; i<nrecvs; i++) {
37013f74950SBarry Smith     ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr);
3718965ea79SLois Curfman McInnes   }
3728965ea79SLois Curfman McInnes 
3738965ea79SLois Curfman McInnes   /* do sends:
3748965ea79SLois Curfman McInnes       1) starts[i] gives the starting index in svalues for stuff going to
3758965ea79SLois Curfman McInnes          the ith processor
3768965ea79SLois Curfman McInnes   */
37713f74950SBarry Smith   ierr = PetscMalloc((N+1)*sizeof(PetscInt),&svalues);CHKERRQ(ierr);
378b0a32e0cSBarry Smith   ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr);
37913f74950SBarry Smith   ierr = PetscMalloc((size+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr);
3808965ea79SLois Curfman McInnes   starts[0]  = 0;
381c1dc657dSBarry Smith   for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];}
3828965ea79SLois Curfman McInnes   for (i=0; i<N; i++) {
3838965ea79SLois Curfman McInnes     svalues[starts[owner[i]]++] = rows[i];
3848965ea79SLois Curfman McInnes   }
3858965ea79SLois Curfman McInnes 
3868965ea79SLois Curfman McInnes   starts[0] = 0;
387c1dc657dSBarry Smith   for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];}
3888965ea79SLois Curfman McInnes   count = 0;
3898965ea79SLois Curfman McInnes   for (i=0; i<size; i++) {
390c1dc657dSBarry Smith     if (nprocs[2*i+1]) {
39113f74950SBarry Smith       ierr = MPI_Isend(svalues+starts[i],nprocs[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr);
3928965ea79SLois Curfman McInnes     }
3938965ea79SLois Curfman McInnes   }
394606d414cSSatish Balay   ierr = PetscFree(starts);CHKERRQ(ierr);
3958965ea79SLois Curfman McInnes 
3968965ea79SLois Curfman McInnes   base = owners[rank];
3978965ea79SLois Curfman McInnes 
3988965ea79SLois Curfman McInnes   /*  wait on receives */
39913f74950SBarry Smith   ierr   = PetscMalloc(2*(nrecvs+1)*sizeof(PetscInt),&lens);CHKERRQ(ierr);
4008965ea79SLois Curfman McInnes   source = lens + nrecvs;
4018965ea79SLois Curfman McInnes   count  = nrecvs; slen = 0;
4028965ea79SLois Curfman McInnes   while (count) {
403ca161407SBarry Smith     ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr);
4048965ea79SLois Curfman McInnes     /* unpack receives into our local space */
40513f74950SBarry Smith     ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr);
4068965ea79SLois Curfman McInnes     source[imdex]  = recv_status.MPI_SOURCE;
4078965ea79SLois Curfman McInnes     lens[imdex]    = n;
4088965ea79SLois Curfman McInnes     slen += n;
4098965ea79SLois Curfman McInnes     count--;
4108965ea79SLois Curfman McInnes   }
411606d414cSSatish Balay   ierr = PetscFree(recv_waits);CHKERRQ(ierr);
4128965ea79SLois Curfman McInnes 
4138965ea79SLois Curfman McInnes   /* move the data into the send scatter */
41413f74950SBarry Smith   ierr = PetscMalloc((slen+1)*sizeof(PetscInt),&lrows);CHKERRQ(ierr);
4158965ea79SLois Curfman McInnes   count = 0;
4168965ea79SLois Curfman McInnes   for (i=0; i<nrecvs; i++) {
4178965ea79SLois Curfman McInnes     values = rvalues + i*nmax;
4188965ea79SLois Curfman McInnes     for (j=0; j<lens[i]; j++) {
4198965ea79SLois Curfman McInnes       lrows[count++] = values[j] - base;
4208965ea79SLois Curfman McInnes     }
4218965ea79SLois Curfman McInnes   }
422606d414cSSatish Balay   ierr = PetscFree(rvalues);CHKERRQ(ierr);
423606d414cSSatish Balay   ierr = PetscFree(lens);CHKERRQ(ierr);
424606d414cSSatish Balay   ierr = PetscFree(owner);CHKERRQ(ierr);
425606d414cSSatish Balay   ierr = PetscFree(nprocs);CHKERRQ(ierr);
4268965ea79SLois Curfman McInnes 
4278965ea79SLois Curfman McInnes   /* actually zap the local rows */
428f4df32b1SMatthew Knepley   ierr = MatZeroRows(l->A,slen,lrows,diag);CHKERRQ(ierr);
429606d414cSSatish Balay   ierr = PetscFree(lrows);CHKERRQ(ierr);
4308965ea79SLois Curfman McInnes 
4318965ea79SLois Curfman McInnes   /* wait on sends */
4328965ea79SLois Curfman McInnes   if (nsends) {
433b0a32e0cSBarry Smith     ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr);
434ca161407SBarry Smith     ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr);
435606d414cSSatish Balay     ierr = PetscFree(send_status);CHKERRQ(ierr);
4368965ea79SLois Curfman McInnes   }
437606d414cSSatish Balay   ierr = PetscFree(send_waits);CHKERRQ(ierr);
438606d414cSSatish Balay   ierr = PetscFree(svalues);CHKERRQ(ierr);
4398965ea79SLois Curfman McInnes 
4403a40ed3dSBarry Smith   PetscFunctionReturn(0);
4418965ea79SLois Curfman McInnes }
4428965ea79SLois Curfman McInnes 
4434a2ae208SSatish Balay #undef __FUNCT__
4444a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIDense"
445dfbe8321SBarry Smith PetscErrorCode MatMult_MPIDense(Mat mat,Vec xx,Vec yy)
4468965ea79SLois Curfman McInnes {
44739ddd567SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
448dfbe8321SBarry Smith   PetscErrorCode ierr;
449c456f294SBarry Smith 
4503a40ed3dSBarry Smith   PetscFunctionBegin;
451ca9f406cSSatish Balay   ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
452ca9f406cSSatish Balay   ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
45344cd7ae7SLois Curfman McInnes   ierr = MatMult_SeqDense(mdn->A,mdn->lvec,yy);CHKERRQ(ierr);
4543a40ed3dSBarry Smith   PetscFunctionReturn(0);
4558965ea79SLois Curfman McInnes }
4568965ea79SLois Curfman McInnes 
4574a2ae208SSatish Balay #undef __FUNCT__
4584a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIDense"
459dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz)
4608965ea79SLois Curfman McInnes {
46139ddd567SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
462dfbe8321SBarry Smith   PetscErrorCode ierr;
463c456f294SBarry Smith 
4643a40ed3dSBarry Smith   PetscFunctionBegin;
465ca9f406cSSatish Balay   ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
466ca9f406cSSatish Balay   ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
46744cd7ae7SLois Curfman McInnes   ierr = MatMultAdd_SeqDense(mdn->A,mdn->lvec,yy,zz);CHKERRQ(ierr);
4683a40ed3dSBarry Smith   PetscFunctionReturn(0);
4698965ea79SLois Curfman McInnes }
4708965ea79SLois Curfman McInnes 
4714a2ae208SSatish Balay #undef __FUNCT__
4724a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIDense"
473dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIDense(Mat A,Vec xx,Vec yy)
474096963f5SLois Curfman McInnes {
475096963f5SLois Curfman McInnes   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
476dfbe8321SBarry Smith   PetscErrorCode ierr;
47787828ca2SBarry Smith   PetscScalar    zero = 0.0;
478096963f5SLois Curfman McInnes 
4793a40ed3dSBarry Smith   PetscFunctionBegin;
4802dcb1b2aSMatthew Knepley   ierr = VecSet(yy,zero);CHKERRQ(ierr);
4817c922b88SBarry Smith   ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr);
482ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
483ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
4843a40ed3dSBarry Smith   PetscFunctionReturn(0);
485096963f5SLois Curfman McInnes }
486096963f5SLois Curfman McInnes 
4874a2ae208SSatish Balay #undef __FUNCT__
4884a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIDense"
489dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz)
490096963f5SLois Curfman McInnes {
491096963f5SLois Curfman McInnes   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
492dfbe8321SBarry Smith   PetscErrorCode ierr;
493096963f5SLois Curfman McInnes 
4943a40ed3dSBarry Smith   PetscFunctionBegin;
4953501a2bdSLois Curfman McInnes   ierr = VecCopy(yy,zz);CHKERRQ(ierr);
4967c922b88SBarry Smith   ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr);
497ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
498ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
4993a40ed3dSBarry Smith   PetscFunctionReturn(0);
500096963f5SLois Curfman McInnes }
501096963f5SLois Curfman McInnes 
5024a2ae208SSatish Balay #undef __FUNCT__
5034a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIDense"
504dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIDense(Mat A,Vec v)
5058965ea79SLois Curfman McInnes {
50639ddd567SLois Curfman McInnes   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
507096963f5SLois Curfman McInnes   Mat_SeqDense   *aloc = (Mat_SeqDense*)a->A->data;
508dfbe8321SBarry Smith   PetscErrorCode ierr;
509899cda47SBarry Smith   PetscInt       len,i,n,m = A->rmap.n,radd;
51087828ca2SBarry Smith   PetscScalar    *x,zero = 0.0;
511ed3cc1f0SBarry Smith 
5123a40ed3dSBarry Smith   PetscFunctionBegin;
5132dcb1b2aSMatthew Knepley   ierr = VecSet(v,zero);CHKERRQ(ierr);
5141ebc52fbSHong Zhang   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
515096963f5SLois Curfman McInnes   ierr = VecGetSize(v,&n);CHKERRQ(ierr);
516899cda47SBarry Smith   if (n != A->rmap.N) SETERRQ(PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec");
517899cda47SBarry Smith   len  = PetscMin(a->A->rmap.n,a->A->cmap.n);
518899cda47SBarry Smith   radd = A->rmap.rstart*m;
51944cd7ae7SLois Curfman McInnes   for (i=0; i<len; i++) {
520096963f5SLois Curfman McInnes     x[i] = aloc->v[radd + i*m + i];
521096963f5SLois Curfman McInnes   }
5221ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
5233a40ed3dSBarry Smith   PetscFunctionReturn(0);
5248965ea79SLois Curfman McInnes }
5258965ea79SLois Curfman McInnes 
5264a2ae208SSatish Balay #undef __FUNCT__
5274a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIDense"
528dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIDense(Mat mat)
5298965ea79SLois Curfman McInnes {
5303501a2bdSLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
531dfbe8321SBarry Smith   PetscErrorCode ierr;
53201b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK)
53301b82886SBarry Smith   Mat_Plapack   *lu=(Mat_Plapack*)(mat->spptr);
53401b82886SBarry Smith #endif
535ed3cc1f0SBarry Smith 
5363a40ed3dSBarry Smith   PetscFunctionBegin;
53794d884c6SBarry Smith 
538aa482453SBarry Smith #if defined(PETSC_USE_LOG)
539899cda47SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D, Cols=%D",mat->rmap.N,mat->cmap.N);
5408965ea79SLois Curfman McInnes #endif
5418798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
5423501a2bdSLois Curfman McInnes   ierr = MatDestroy(mdn->A);CHKERRQ(ierr);
54305b42c5fSBarry Smith   if (mdn->lvec)   {ierr = VecDestroy(mdn->lvec);CHKERRQ(ierr);}
54405b42c5fSBarry Smith   if (mdn->Mvctx)  {ierr = VecScatterDestroy(mdn->Mvctx);CHKERRQ(ierr);}
54501b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK)
5462fbe02b9SBarry Smith   if (lu) {
54762b4c0b3SBarry Smith     ierr = PLA_Obj_free(&lu->A);CHKERRQ(ierr);
54862b4c0b3SBarry Smith     ierr = PLA_Obj_free (&lu->pivots);CHKERRQ(ierr);
54962b4c0b3SBarry Smith     ierr = PLA_Temp_free(&lu->templ);CHKERRQ(ierr);
55009d27a7eSBarry Smith 
5512fbe02b9SBarry Smith     if (lu->is_pla) {
55201b82886SBarry Smith       ierr = ISDestroy(lu->is_pla);CHKERRQ(ierr);
55301b82886SBarry Smith       ierr = ISDestroy(lu->is_petsc);CHKERRQ(ierr);
55401b82886SBarry Smith       ierr = VecScatterDestroy(lu->ctx);CHKERRQ(ierr);
555622d7880SLois Curfman McInnes     }
5562fbe02b9SBarry Smith   }
55701b82886SBarry Smith #endif
55801b82886SBarry Smith 
559606d414cSSatish Balay   ierr = PetscFree(mdn);CHKERRQ(ierr);
560dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
561901853e0SKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr);
562901853e0SKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMPIDenseSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
5634ae313f4SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMult_mpiaij_mpidense_C","",PETSC_NULL);CHKERRQ(ierr);
5644ae313f4SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C","",PETSC_NULL);CHKERRQ(ierr);
5654ae313f4SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C","",PETSC_NULL);CHKERRQ(ierr);
5663a40ed3dSBarry Smith   PetscFunctionReturn(0);
5678965ea79SLois Curfman McInnes }
56839ddd567SLois Curfman McInnes 
5694a2ae208SSatish Balay #undef __FUNCT__
5704a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense_Binary"
5716849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_Binary(Mat mat,PetscViewer viewer)
5728965ea79SLois Curfman McInnes {
57339ddd567SLois Curfman McInnes   Mat_MPIDense      *mdn = (Mat_MPIDense*)mat->data;
574dfbe8321SBarry Smith   PetscErrorCode    ierr;
575aa05aa95SBarry Smith   PetscViewerFormat format;
576aa05aa95SBarry Smith   int               fd;
577aa05aa95SBarry Smith   PetscInt          header[4],mmax,N = mat->cmap.N,i,j,m,k;
578aa05aa95SBarry Smith   PetscMPIInt       rank,tag  = ((PetscObject)viewer)->tag,size;
579578230a0SSatish Balay   PetscScalar       *work,*v,*vv;
580aa05aa95SBarry Smith   Mat_SeqDense      *a = (Mat_SeqDense*)mdn->A->data;
581aa05aa95SBarry Smith   MPI_Status        status;
5827056b6fcSBarry Smith 
5833a40ed3dSBarry Smith   PetscFunctionBegin;
58439ddd567SLois Curfman McInnes   if (mdn->size == 1) {
58539ddd567SLois Curfman McInnes     ierr = MatView(mdn->A,viewer);CHKERRQ(ierr);
586aa05aa95SBarry Smith   } else {
587aa05aa95SBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
5887adad957SLisandro Dalcin     ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr);
5897adad957SLisandro Dalcin     ierr = MPI_Comm_size(((PetscObject)mat)->comm,&size);CHKERRQ(ierr);
590aa05aa95SBarry Smith 
591aa05aa95SBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
592aa05aa95SBarry Smith     if (format == PETSC_VIEWER_BINARY_NATIVE) {
593aa05aa95SBarry Smith 
594aa05aa95SBarry Smith       if (!rank) {
595aa05aa95SBarry Smith 	/* store the matrix as a dense matrix */
596aa05aa95SBarry Smith 	header[0] = MAT_FILE_COOKIE;
597aa05aa95SBarry Smith 	header[1] = mat->rmap.N;
598aa05aa95SBarry Smith 	header[2] = N;
599aa05aa95SBarry Smith 	header[3] = MATRIX_BINARY_FORMAT_DENSE;
600aa05aa95SBarry Smith 	ierr = PetscBinaryWrite(fd,header,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
601aa05aa95SBarry Smith 
602aa05aa95SBarry Smith 	/* get largest work array needed for transposing array */
603aa05aa95SBarry Smith         mmax = mat->rmap.n;
604aa05aa95SBarry Smith         for (i=1; i<size; i++) {
605aa05aa95SBarry Smith           mmax = PetscMax(mmax,mat->rmap.range[i+1] - mat->rmap.range[i]);
6068965ea79SLois Curfman McInnes         }
607aa05aa95SBarry Smith 	ierr = PetscMalloc(mmax*N*sizeof(PetscScalar),&work);CHKERRQ(ierr);
608aa05aa95SBarry Smith 
609aa05aa95SBarry Smith 	/* write out local array, by rows */
610aa05aa95SBarry Smith         m    = mat->rmap.n;
611aa05aa95SBarry Smith 	v    = a->v;
612aa05aa95SBarry Smith         for (j=0; j<N; j++) {
613aa05aa95SBarry Smith           for (i=0; i<m; i++) {
614578230a0SSatish Balay 	    work[j + i*N] = *v++;
615aa05aa95SBarry Smith 	  }
616aa05aa95SBarry Smith 	}
617aa05aa95SBarry Smith 	ierr = PetscBinaryWrite(fd,work,m*N,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr);
618aa05aa95SBarry Smith         /* get largest work array to receive messages from other processes, excludes process zero */
619aa05aa95SBarry Smith         mmax = 0;
620aa05aa95SBarry Smith         for (i=1; i<size; i++) {
621aa05aa95SBarry Smith           mmax = PetscMax(mmax,mat->rmap.range[i+1] - mat->rmap.range[i]);
622aa05aa95SBarry Smith         }
623578230a0SSatish Balay 	ierr = PetscMalloc(mmax*N*sizeof(PetscScalar),&vv);CHKERRQ(ierr);
624578230a0SSatish Balay         v = vv;
625aa05aa95SBarry Smith         for (k=1; k<size; k++) {
626aa05aa95SBarry Smith           m    = mat->rmap.range[k+1] - mat->rmap.range[k];
6277adad957SLisandro Dalcin           ierr = MPI_Recv(v,m*N,MPIU_SCALAR,k,tag,((PetscObject)mat)->comm,&status);CHKERRQ(ierr);
628aa05aa95SBarry Smith 
629aa05aa95SBarry Smith           for (j=0; j<N; j++) {
630aa05aa95SBarry Smith             for (i=0; i<m; i++) {
631578230a0SSatish Balay               work[j + i*N] = *v++;
632aa05aa95SBarry Smith 	    }
633aa05aa95SBarry Smith 	  }
634aa05aa95SBarry Smith 	  ierr = PetscBinaryWrite(fd,work,m*N,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr);
635aa05aa95SBarry Smith         }
636aa05aa95SBarry Smith         ierr = PetscFree(work);CHKERRQ(ierr);
637578230a0SSatish Balay         ierr = PetscFree(vv);CHKERRQ(ierr);
638aa05aa95SBarry Smith       } else {
6397adad957SLisandro Dalcin         ierr = MPI_Send(a->v,mat->rmap.n*mat->cmap.N,MPIU_SCALAR,0,tag,((PetscObject)mat)->comm);CHKERRQ(ierr);
640aa05aa95SBarry Smith       }
641aa05aa95SBarry Smith     }
642aa05aa95SBarry Smith   }
6433a40ed3dSBarry Smith   PetscFunctionReturn(0);
6448965ea79SLois Curfman McInnes }
6458965ea79SLois Curfman McInnes 
6464a2ae208SSatish Balay #undef __FUNCT__
6474a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense_ASCIIorDraworSocket"
6486849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
6498965ea79SLois Curfman McInnes {
65039ddd567SLois Curfman McInnes   Mat_MPIDense      *mdn = (Mat_MPIDense*)mat->data;
651dfbe8321SBarry Smith   PetscErrorCode    ierr;
65232dcc486SBarry Smith   PetscMPIInt       size = mdn->size,rank = mdn->rank;
653b0a32e0cSBarry Smith   PetscViewerType   vtype;
65432077d6dSBarry Smith   PetscTruth        iascii,isdraw;
655b0a32e0cSBarry Smith   PetscViewer       sviewer;
656f3ef73ceSBarry Smith   PetscViewerFormat format;
65701b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK)
65801b82886SBarry Smith   Mat_Plapack       *lu=(Mat_Plapack*)(mat->spptr);
65901b82886SBarry Smith #endif
6608965ea79SLois Curfman McInnes 
6613a40ed3dSBarry Smith   PetscFunctionBegin;
66232077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
663fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
66432077d6dSBarry Smith   if (iascii) {
665b0a32e0cSBarry Smith     ierr = PetscViewerGetType(viewer,&vtype);CHKERRQ(ierr);
666b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
667456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
6684e220ebcSLois Curfman McInnes       MatInfo info;
669888f2ed8SSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
670899cda47SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"  [%d] local rows %D nz %D nz alloced %D mem %D \n",rank,mat->rmap.n,
67177431f27SBarry Smith                    (PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory);CHKERRQ(ierr);
672b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
6733501a2bdSLois Curfman McInnes       ierr = VecScatterView(mdn->Mvctx,viewer);CHKERRQ(ierr);
67401b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK)
67501b82886SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"PLAPACK run parameters:\n");CHKERRQ(ierr);
67604fea9ffSBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  Processor mesh: nprows %d, npcols %d\n",Plapack_nprows, Plapack_npcols);CHKERRQ(ierr);
67701b82886SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  Distr. block size nb: %d \n",lu->nb);CHKERRQ(ierr);
678eae6fb2eSBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  Error checking: %d\n",Plapack_ierror);CHKERRQ(ierr);
679eae6fb2eSBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  Algorithmic block size: %d\n",Plapack_nb_alg);CHKERRQ(ierr);
68001b82886SBarry Smith #endif
6813a40ed3dSBarry Smith       PetscFunctionReturn(0);
682fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
6833a40ed3dSBarry Smith       PetscFunctionReturn(0);
6848965ea79SLois Curfman McInnes     }
685f1af5d2fSBarry Smith   } else if (isdraw) {
686b0a32e0cSBarry Smith     PetscDraw  draw;
687f1af5d2fSBarry Smith     PetscTruth isnull;
688f1af5d2fSBarry Smith 
689b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
690b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr);
691f1af5d2fSBarry Smith     if (isnull) PetscFunctionReturn(0);
692f1af5d2fSBarry Smith   }
69377ed5343SBarry Smith 
6948965ea79SLois Curfman McInnes   if (size == 1) {
69539ddd567SLois Curfman McInnes     ierr = MatView(mdn->A,viewer);CHKERRQ(ierr);
6963a40ed3dSBarry Smith   } else {
6978965ea79SLois Curfman McInnes     /* assemble the entire matrix onto first processor. */
6988965ea79SLois Curfman McInnes     Mat         A;
699899cda47SBarry Smith     PetscInt    M = mat->rmap.N,N = mat->cmap.N,m,row,i,nz;
700ba8c8a56SBarry Smith     PetscInt    *cols;
701ba8c8a56SBarry Smith     PetscScalar *vals;
7028965ea79SLois Curfman McInnes 
7037adad957SLisandro Dalcin     ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr);
7048965ea79SLois Curfman McInnes     if (!rank) {
705f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
7063a40ed3dSBarry Smith     } else {
707f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
7088965ea79SLois Curfman McInnes     }
7097adad957SLisandro Dalcin     /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */
710878740d9SKris Buschelman     ierr = MatSetType(A,MATMPIDENSE);CHKERRQ(ierr);
711878740d9SKris Buschelman     ierr = MatMPIDenseSetPreallocation(A,PETSC_NULL);
71252e6d16bSBarry Smith     ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr);
7138965ea79SLois Curfman McInnes 
71439ddd567SLois Curfman McInnes     /* Copy the matrix ... This isn't the most efficient means,
71539ddd567SLois Curfman McInnes        but it's quick for now */
71651022da4SBarry Smith     A->insertmode = INSERT_VALUES;
717899cda47SBarry Smith     row = mat->rmap.rstart; m = mdn->A->rmap.n;
7188965ea79SLois Curfman McInnes     for (i=0; i<m; i++) {
719ba8c8a56SBarry Smith       ierr = MatGetRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr);
720ba8c8a56SBarry Smith       ierr = MatSetValues_MPIDense(A,1,&row,nz,cols,vals,INSERT_VALUES);CHKERRQ(ierr);
721ba8c8a56SBarry Smith       ierr = MatRestoreRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr);
72239ddd567SLois Curfman McInnes       row++;
7238965ea79SLois Curfman McInnes     }
7248965ea79SLois Curfman McInnes 
7256d4a8577SBarry Smith     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
7266d4a8577SBarry Smith     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
727b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
728b9b97703SBarry Smith     if (!rank) {
7296831982aSBarry Smith       ierr = MatView(((Mat_MPIDense*)(A->data))->A,sviewer);CHKERRQ(ierr);
7308965ea79SLois Curfman McInnes     }
731b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
732b0a32e0cSBarry Smith     ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
7338965ea79SLois Curfman McInnes     ierr = MatDestroy(A);CHKERRQ(ierr);
7348965ea79SLois Curfman McInnes   }
7353a40ed3dSBarry Smith   PetscFunctionReturn(0);
7368965ea79SLois Curfman McInnes }
7378965ea79SLois Curfman McInnes 
7384a2ae208SSatish Balay #undef __FUNCT__
7394a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense"
740dfbe8321SBarry Smith PetscErrorCode MatView_MPIDense(Mat mat,PetscViewer viewer)
7418965ea79SLois Curfman McInnes {
742dfbe8321SBarry Smith   PetscErrorCode ierr;
74332077d6dSBarry Smith   PetscTruth     iascii,isbinary,isdraw,issocket;
7448965ea79SLois Curfman McInnes 
745433994e6SBarry Smith   PetscFunctionBegin;
7460f5bd95cSBarry Smith 
74732077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
748fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
749b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr);
750fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
7510f5bd95cSBarry Smith 
75232077d6dSBarry Smith   if (iascii || issocket || isdraw) {
753f1af5d2fSBarry Smith     ierr = MatView_MPIDense_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
7540f5bd95cSBarry Smith   } else if (isbinary) {
7553a40ed3dSBarry Smith     ierr = MatView_MPIDense_Binary(mat,viewer);CHKERRQ(ierr);
7565cd90555SBarry Smith   } else {
757958c9bccSBarry Smith     SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPI dense matrix",((PetscObject)viewer)->type_name);
7588965ea79SLois Curfman McInnes   }
7593a40ed3dSBarry Smith   PetscFunctionReturn(0);
7608965ea79SLois Curfman McInnes }
7618965ea79SLois Curfman McInnes 
7624a2ae208SSatish Balay #undef __FUNCT__
7634a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIDense"
764dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info)
7658965ea79SLois Curfman McInnes {
7663501a2bdSLois Curfman McInnes   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
7673501a2bdSLois Curfman McInnes   Mat            mdn = mat->A;
768dfbe8321SBarry Smith   PetscErrorCode ierr;
769329f5518SBarry Smith   PetscReal      isend[5],irecv[5];
7708965ea79SLois Curfman McInnes 
7713a40ed3dSBarry Smith   PetscFunctionBegin;
772899cda47SBarry Smith   info->rows_global    = (double)A->rmap.N;
773899cda47SBarry Smith   info->columns_global = (double)A->cmap.N;
774899cda47SBarry Smith   info->rows_local     = (double)A->rmap.n;
775899cda47SBarry Smith   info->columns_local  = (double)A->cmap.N;
7764e220ebcSLois Curfman McInnes   info->block_size     = 1.0;
7774e220ebcSLois Curfman McInnes   ierr = MatGetInfo(mdn,MAT_LOCAL,info);CHKERRQ(ierr);
7784e220ebcSLois Curfman McInnes   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
7794e220ebcSLois Curfman McInnes   isend[3] = info->memory;  isend[4] = info->mallocs;
7808965ea79SLois Curfman McInnes   if (flag == MAT_LOCAL) {
7814e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
7824e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
7834e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
7844e220ebcSLois Curfman McInnes     info->memory       = isend[3];
7854e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
7868965ea79SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_MAX) {
7877adad957SLisandro Dalcin     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,((PetscObject)A)->comm);CHKERRQ(ierr);
7884e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
7894e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
7904e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
7914e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
7924e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
7938965ea79SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_SUM) {
7947adad957SLisandro Dalcin     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,((PetscObject)A)->comm);CHKERRQ(ierr);
7954e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
7964e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
7974e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
7984e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
7994e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
8008965ea79SLois Curfman McInnes   }
8014e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
8024e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
8034e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
8043a40ed3dSBarry Smith   PetscFunctionReturn(0);
8058965ea79SLois Curfman McInnes }
8068965ea79SLois Curfman McInnes 
8074a2ae208SSatish Balay #undef __FUNCT__
8084a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIDense"
8094e0d8c25SBarry Smith PetscErrorCode MatSetOption_MPIDense(Mat A,MatOption op,PetscTruth flg)
8108965ea79SLois Curfman McInnes {
81139ddd567SLois Curfman McInnes   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
812dfbe8321SBarry Smith   PetscErrorCode ierr;
8138965ea79SLois Curfman McInnes 
8143a40ed3dSBarry Smith   PetscFunctionBegin;
81512c028f9SKris Buschelman   switch (op) {
816512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
81712c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
81812c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
8194e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
82012c028f9SKris Buschelman     break;
82112c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
8224e0d8c25SBarry Smith     a->roworiented = flg;
8234e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
82412c028f9SKris Buschelman     break;
8254e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
82612c028f9SKris Buschelman   case MAT_USE_HASH_TABLE:
827290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
82812c028f9SKris Buschelman     break;
82912c028f9SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
8304e0d8c25SBarry Smith     a->donotstash = flg;
83112c028f9SKris Buschelman     break;
83277e54ba9SKris Buschelman   case MAT_SYMMETRIC:
83377e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
8349a4540c5SBarry Smith   case MAT_HERMITIAN:
8359a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
836600fe468SBarry Smith   case MAT_IGNORE_LOWER_TRIANGULAR:
837290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
83877e54ba9SKris Buschelman     break;
83912c028f9SKris Buschelman   default:
840600fe468SBarry Smith     SETERRQ1(PETSC_ERR_SUP,"unknown option %s",MatOptions[op]);
8413a40ed3dSBarry Smith   }
8423a40ed3dSBarry Smith   PetscFunctionReturn(0);
8438965ea79SLois Curfman McInnes }
8448965ea79SLois Curfman McInnes 
8458965ea79SLois Curfman McInnes 
8464a2ae208SSatish Balay #undef __FUNCT__
8474a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIDense"
848dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIDense(Mat A,Vec ll,Vec rr)
8495b2fa520SLois Curfman McInnes {
8505b2fa520SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)A->data;
8515b2fa520SLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)mdn->A->data;
85287828ca2SBarry Smith   PetscScalar    *l,*r,x,*v;
853dfbe8321SBarry Smith   PetscErrorCode ierr;
854899cda47SBarry Smith   PetscInt       i,j,s2a,s3a,s2,s3,m=mdn->A->rmap.n,n=mdn->A->cmap.n;
8555b2fa520SLois Curfman McInnes 
8565b2fa520SLois Curfman McInnes   PetscFunctionBegin;
85772d926a5SLois Curfman McInnes   ierr = MatGetLocalSize(A,&s2,&s3);CHKERRQ(ierr);
8585b2fa520SLois Curfman McInnes   if (ll) {
85972d926a5SLois Curfman McInnes     ierr = VecGetLocalSize(ll,&s2a);CHKERRQ(ierr);
860175be7b4SMatthew Knepley     if (s2a != s2) SETERRQ2(PETSC_ERR_ARG_SIZ,"Left scaling vector non-conforming local size, %d != %d.", s2a, s2);
8611ebc52fbSHong Zhang     ierr = VecGetArray(ll,&l);CHKERRQ(ierr);
8625b2fa520SLois Curfman McInnes     for (i=0; i<m; i++) {
8635b2fa520SLois Curfman McInnes       x = l[i];
8645b2fa520SLois Curfman McInnes       v = mat->v + i;
8655b2fa520SLois Curfman McInnes       for (j=0; j<n; j++) { (*v) *= x; v+= m;}
8665b2fa520SLois Curfman McInnes     }
8671ebc52fbSHong Zhang     ierr = VecRestoreArray(ll,&l);CHKERRQ(ierr);
868efee365bSSatish Balay     ierr = PetscLogFlops(n*m);CHKERRQ(ierr);
8695b2fa520SLois Curfman McInnes   }
8705b2fa520SLois Curfman McInnes   if (rr) {
871175be7b4SMatthew Knepley     ierr = VecGetLocalSize(rr,&s3a);CHKERRQ(ierr);
872175be7b4SMatthew Knepley     if (s3a != s3) SETERRQ2(PETSC_ERR_ARG_SIZ,"Right scaling vec non-conforming local size, %d != %d.", s3a, s3);
873ca9f406cSSatish Balay     ierr = VecScatterBegin(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
874ca9f406cSSatish Balay     ierr = VecScatterEnd(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
8751ebc52fbSHong Zhang     ierr = VecGetArray(mdn->lvec,&r);CHKERRQ(ierr);
8765b2fa520SLois Curfman McInnes     for (i=0; i<n; i++) {
8775b2fa520SLois Curfman McInnes       x = r[i];
8785b2fa520SLois Curfman McInnes       v = mat->v + i*m;
8795b2fa520SLois Curfman McInnes       for (j=0; j<m; j++) { (*v++) *= x;}
8805b2fa520SLois Curfman McInnes     }
8811ebc52fbSHong Zhang     ierr = VecRestoreArray(mdn->lvec,&r);CHKERRQ(ierr);
882efee365bSSatish Balay     ierr = PetscLogFlops(n*m);CHKERRQ(ierr);
8835b2fa520SLois Curfman McInnes   }
8845b2fa520SLois Curfman McInnes   PetscFunctionReturn(0);
8855b2fa520SLois Curfman McInnes }
8865b2fa520SLois Curfman McInnes 
8874a2ae208SSatish Balay #undef __FUNCT__
8884a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIDense"
889dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIDense(Mat A,NormType type,PetscReal *nrm)
890096963f5SLois Curfman McInnes {
8913501a2bdSLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)A->data;
8923501a2bdSLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)mdn->A->data;
893dfbe8321SBarry Smith   PetscErrorCode ierr;
89413f74950SBarry Smith   PetscInt       i,j;
895329f5518SBarry Smith   PetscReal      sum = 0.0;
89687828ca2SBarry Smith   PetscScalar    *v = mat->v;
8973501a2bdSLois Curfman McInnes 
8983a40ed3dSBarry Smith   PetscFunctionBegin;
8993501a2bdSLois Curfman McInnes   if (mdn->size == 1) {
900064f8208SBarry Smith     ierr =  MatNorm(mdn->A,type,nrm);CHKERRQ(ierr);
9013501a2bdSLois Curfman McInnes   } else {
9023501a2bdSLois Curfman McInnes     if (type == NORM_FROBENIUS) {
903899cda47SBarry Smith       for (i=0; i<mdn->A->cmap.n*mdn->A->rmap.n; i++) {
904aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
905329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
9063501a2bdSLois Curfman McInnes #else
9073501a2bdSLois Curfman McInnes         sum += (*v)*(*v); v++;
9083501a2bdSLois Curfman McInnes #endif
9093501a2bdSLois Curfman McInnes       }
9107adad957SLisandro Dalcin       ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_SUM,((PetscObject)A)->comm);CHKERRQ(ierr);
911064f8208SBarry Smith       *nrm = sqrt(*nrm);
912899cda47SBarry Smith       ierr = PetscLogFlops(2*mdn->A->cmap.n*mdn->A->rmap.n);CHKERRQ(ierr);
9133a40ed3dSBarry Smith     } else if (type == NORM_1) {
914329f5518SBarry Smith       PetscReal *tmp,*tmp2;
915899cda47SBarry Smith       ierr = PetscMalloc(2*A->cmap.N*sizeof(PetscReal),&tmp);CHKERRQ(ierr);
916899cda47SBarry Smith       tmp2 = tmp + A->cmap.N;
917899cda47SBarry Smith       ierr = PetscMemzero(tmp,2*A->cmap.N*sizeof(PetscReal));CHKERRQ(ierr);
918064f8208SBarry Smith       *nrm = 0.0;
9193501a2bdSLois Curfman McInnes       v = mat->v;
920899cda47SBarry Smith       for (j=0; j<mdn->A->cmap.n; j++) {
921899cda47SBarry Smith         for (i=0; i<mdn->A->rmap.n; i++) {
92267e560aaSBarry Smith           tmp[j] += PetscAbsScalar(*v);  v++;
9233501a2bdSLois Curfman McInnes         }
9243501a2bdSLois Curfman McInnes       }
9257adad957SLisandro Dalcin       ierr = MPI_Allreduce(tmp,tmp2,A->cmap.N,MPIU_REAL,MPI_SUM,((PetscObject)A)->comm);CHKERRQ(ierr);
926899cda47SBarry Smith       for (j=0; j<A->cmap.N; j++) {
927064f8208SBarry Smith         if (tmp2[j] > *nrm) *nrm = tmp2[j];
9283501a2bdSLois Curfman McInnes       }
929606d414cSSatish Balay       ierr = PetscFree(tmp);CHKERRQ(ierr);
930899cda47SBarry Smith       ierr = PetscLogFlops(A->cmap.n*A->rmap.n);CHKERRQ(ierr);
9313a40ed3dSBarry Smith     } else if (type == NORM_INFINITY) { /* max row norm */
932329f5518SBarry Smith       PetscReal ntemp;
9333501a2bdSLois Curfman McInnes       ierr = MatNorm(mdn->A,type,&ntemp);CHKERRQ(ierr);
9347adad957SLisandro Dalcin       ierr = MPI_Allreduce(&ntemp,nrm,1,MPIU_REAL,MPI_MAX,((PetscObject)A)->comm);CHKERRQ(ierr);
9353a40ed3dSBarry Smith     } else {
93629bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"No support for two norm");
9373501a2bdSLois Curfman McInnes     }
9383501a2bdSLois Curfman McInnes   }
9393a40ed3dSBarry Smith   PetscFunctionReturn(0);
9403501a2bdSLois Curfman McInnes }
9413501a2bdSLois Curfman McInnes 
9424a2ae208SSatish Balay #undef __FUNCT__
9434a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPIDense"
944fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIDense(Mat A,MatReuse reuse,Mat *matout)
9453501a2bdSLois Curfman McInnes {
9463501a2bdSLois Curfman McInnes   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
9473501a2bdSLois Curfman McInnes   Mat_SeqDense   *Aloc = (Mat_SeqDense*)a->A->data;
9483501a2bdSLois Curfman McInnes   Mat            B;
949899cda47SBarry Smith   PetscInt       M = A->rmap.N,N = A->cmap.N,m,n,*rwork,rstart = A->rmap.rstart;
9506849ba73SBarry Smith   PetscErrorCode ierr;
95113f74950SBarry Smith   PetscInt       j,i;
95287828ca2SBarry Smith   PetscScalar    *v;
9533501a2bdSLois Curfman McInnes 
9543a40ed3dSBarry Smith   PetscFunctionBegin;
955fc4dec0aSBarry Smith   if (A == *matout && M != N) {
95629bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"Supports square matrix only in-place");
9577056b6fcSBarry Smith   }
958fc4dec0aSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || A == *matout) {
9597adad957SLisandro Dalcin     ierr = MatCreate(((PetscObject)A)->comm,&B);CHKERRQ(ierr);
960f69a0ea3SMatthew Knepley     ierr = MatSetSizes(B,PETSC_DECIDE,PETSC_DECIDE,N,M);CHKERRQ(ierr);
9617adad957SLisandro Dalcin     ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr);
962878740d9SKris Buschelman     ierr = MatMPIDenseSetPreallocation(B,PETSC_NULL);CHKERRQ(ierr);
963fc4dec0aSBarry Smith   } else {
964fc4dec0aSBarry Smith     B = *matout;
965fc4dec0aSBarry Smith   }
9663501a2bdSLois Curfman McInnes 
967899cda47SBarry Smith   m = a->A->rmap.n; n = a->A->cmap.n; v = Aloc->v;
9681acff37aSSatish Balay   ierr = PetscMalloc(m*sizeof(PetscInt),&rwork);CHKERRQ(ierr);
9693501a2bdSLois Curfman McInnes   for (i=0; i<m; i++) rwork[i] = rstart + i;
9701acff37aSSatish Balay   for (j=0; j<n; j++) {
9713501a2bdSLois Curfman McInnes     ierr = MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES);CHKERRQ(ierr);
9723501a2bdSLois Curfman McInnes     v   += m;
9733501a2bdSLois Curfman McInnes   }
974606d414cSSatish Balay   ierr = PetscFree(rwork);CHKERRQ(ierr);
9756d4a8577SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
9766d4a8577SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
977fc4dec0aSBarry Smith   if (*matout != A) {
9783501a2bdSLois Curfman McInnes     *matout = B;
9793501a2bdSLois Curfman McInnes   } else {
980273d9f13SBarry Smith     ierr = MatHeaderCopy(A,B);CHKERRQ(ierr);
9813501a2bdSLois Curfman McInnes   }
9823a40ed3dSBarry Smith   PetscFunctionReturn(0);
983096963f5SLois Curfman McInnes }
984096963f5SLois Curfman McInnes 
985d9eff348SSatish Balay #include "petscblaslapack.h"
9864a2ae208SSatish Balay #undef __FUNCT__
9874a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIDense"
988f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIDense(Mat inA,PetscScalar alpha)
98944cd7ae7SLois Curfman McInnes {
99044cd7ae7SLois Curfman McInnes   Mat_MPIDense   *A = (Mat_MPIDense*)inA->data;
99144cd7ae7SLois Curfman McInnes   Mat_SeqDense   *a = (Mat_SeqDense*)A->A->data;
992f4df32b1SMatthew Knepley   PetscScalar    oalpha = alpha;
993efee365bSSatish Balay   PetscErrorCode ierr;
9940805154bSBarry Smith   PetscBLASInt   one = 1,nz = PetscBLASIntCast(inA->rmap.n*inA->cmap.N);
99544cd7ae7SLois Curfman McInnes 
9963a40ed3dSBarry Smith   PetscFunctionBegin;
997f4df32b1SMatthew Knepley   BLASscal_(&nz,&oalpha,a->v,&one);
998efee365bSSatish Balay   ierr = PetscLogFlops(nz);CHKERRQ(ierr);
9993a40ed3dSBarry Smith   PetscFunctionReturn(0);
100044cd7ae7SLois Curfman McInnes }
100144cd7ae7SLois Curfman McInnes 
10026849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat *);
10038965ea79SLois Curfman McInnes 
10044a2ae208SSatish Balay #undef __FUNCT__
10054a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPIDense"
1006dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPIDense(Mat A)
1007273d9f13SBarry Smith {
1008dfbe8321SBarry Smith   PetscErrorCode ierr;
1009273d9f13SBarry Smith 
1010273d9f13SBarry Smith   PetscFunctionBegin;
1011273d9f13SBarry Smith   ierr =  MatMPIDenseSetPreallocation(A,0);CHKERRQ(ierr);
1012273d9f13SBarry Smith   PetscFunctionReturn(0);
1013273d9f13SBarry Smith }
1014273d9f13SBarry Smith 
101501b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK)
1016eae6fb2eSBarry Smith 
1017eae6fb2eSBarry Smith #undef __FUNCT__
1018eae6fb2eSBarry Smith #define __FUNCT__ "MatMPIDenseCreatePlapack"
1019eae6fb2eSBarry Smith PetscErrorCode MatMPIDenseCreatePlapack(Mat A)
1020eae6fb2eSBarry Smith {
1021eae6fb2eSBarry Smith   Mat_Plapack    *lu;
1022eae6fb2eSBarry Smith   PetscErrorCode ierr;
1023eae6fb2eSBarry Smith   PetscInt       M=A->rmap.N;
1024eae6fb2eSBarry Smith   MPI_Comm       comm=((PetscObject)A)->comm;
1025eae6fb2eSBarry Smith   PetscMPIInt    size;
1026eae6fb2eSBarry Smith 
1027eae6fb2eSBarry Smith   PetscFunctionBegin;
10282fbe02b9SBarry Smith   if (A->spptr) PetscFunctionReturn(0);
10292fbe02b9SBarry Smith   ierr = PetscNewLog(A,Mat_Plapack,&lu);CHKERRQ(ierr);
10302fbe02b9SBarry Smith   A->spptr = (void*)lu;
10312fbe02b9SBarry Smith 
1032eae6fb2eSBarry Smith   lu = (Mat_Plapack*)(A->spptr);
1033eae6fb2eSBarry Smith 
1034eae6fb2eSBarry Smith   /* Set default Plapack parameters */
1035eae6fb2eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
1036eae6fb2eSBarry Smith   lu->nb     = M/size;
1037eae6fb2eSBarry Smith   if (M - lu->nb*size) lu->nb++; /* without cyclic distribution */
1038eae6fb2eSBarry Smith 
1039eae6fb2eSBarry Smith   /* Set runtime options */
1040eae6fb2eSBarry Smith   ierr = PetscOptionsBegin(((PetscObject)A)->comm,((PetscObject)A)->prefix,"PLAPACK Options","Mat");CHKERRQ(ierr);
1041eae6fb2eSBarry Smith     ierr = PetscOptionsInt("-mat_plapack_nb","block size of template vector","None",lu->nb,&lu->nb,PETSC_NULL);CHKERRQ(ierr);
1042eae6fb2eSBarry Smith   PetscOptionsEnd();
1043eae6fb2eSBarry Smith 
1044eae6fb2eSBarry Smith   /* Create object distribution template */
1045eae6fb2eSBarry Smith   lu->templ = NULL;
1046eae6fb2eSBarry Smith   ierr = PLA_Temp_create(lu->nb, 0, &lu->templ);CHKERRQ(ierr);
1047eae6fb2eSBarry Smith 
1048eae6fb2eSBarry Smith   /* Set the datatype */
1049eae6fb2eSBarry Smith #if defined(PETSC_USE_COMPLEX)
1050eae6fb2eSBarry Smith   lu->datatype = MPI_DOUBLE_COMPLEX;
1051eae6fb2eSBarry Smith #else
1052eae6fb2eSBarry Smith   lu->datatype = MPI_DOUBLE;
1053eae6fb2eSBarry Smith #endif
1054eae6fb2eSBarry Smith 
1055*79b0a62dSBarry Smith   ierr = PLA_Matrix_create(lu->datatype,M,A->cmap.N,lu->templ,PLA_ALIGN_FIRST,PLA_ALIGN_FIRST,&lu->A);CHKERRQ(ierr);
1056*79b0a62dSBarry Smith 
1057eae6fb2eSBarry Smith 
1058eae6fb2eSBarry Smith   lu->pla_solved     = PETSC_FALSE; /* MatSolve_Plapack() is called yet */
1059eae6fb2eSBarry Smith   PetscFunctionReturn(0);
1060eae6fb2eSBarry Smith }
1061eae6fb2eSBarry Smith 
1062eae6fb2eSBarry Smith #undef __FUNCT__
1063eae6fb2eSBarry Smith #define __FUNCT__ "MatMPIDenseCopyToPlapack"
1064eae6fb2eSBarry Smith PetscErrorCode MatMPIDenseCopyToPlapack(Mat A,Mat F)
1065eae6fb2eSBarry Smith {
1066eae6fb2eSBarry Smith   Mat_Plapack    *lu = (Mat_Plapack*)(F)->spptr;
1067eae6fb2eSBarry Smith   PetscErrorCode ierr;
1068*79b0a62dSBarry Smith   PetscInt       M=A->cmap.N,m=A->rmap.n,rstart;
1069eae6fb2eSBarry Smith   PetscScalar    *array;
1070eae6fb2eSBarry Smith   PetscReal      one = 1.0;
1071eae6fb2eSBarry Smith 
1072eae6fb2eSBarry Smith   PetscFunctionBegin;
10732fbe02b9SBarry Smith   /* Copy A into F->lu->A */
1074eae6fb2eSBarry Smith   ierr = PLA_Obj_set_to_zero(lu->A);CHKERRQ(ierr);
1075eae6fb2eSBarry Smith   ierr = PLA_API_begin();CHKERRQ(ierr);
1076eae6fb2eSBarry Smith   ierr = PLA_Obj_API_open(lu->A);CHKERRQ(ierr);
1077*79b0a62dSBarry Smith   ierr = MatGetOwnershipRange(A,&rstart,PETSC_NULL);CHKERRQ(ierr);
1078eae6fb2eSBarry Smith   ierr = MatGetArray(A,&array);CHKERRQ(ierr);
1079eae6fb2eSBarry Smith   ierr = PLA_API_axpy_matrix_to_global(m,M, &one,(void *)array,m,lu->A,rstart,0);CHKERRQ(ierr);
1080eae6fb2eSBarry Smith   ierr = MatRestoreArray(A,&array);CHKERRQ(ierr);
1081eae6fb2eSBarry Smith   ierr = PLA_Obj_API_close(lu->A);CHKERRQ(ierr);
1082eae6fb2eSBarry Smith   ierr = PLA_API_end();CHKERRQ(ierr);
1083eae6fb2eSBarry Smith   lu->rstart = rstart;
1084eae6fb2eSBarry Smith   PetscFunctionReturn(0);
1085eae6fb2eSBarry Smith }
1086eae6fb2eSBarry Smith 
108701b82886SBarry Smith #undef __FUNCT__
10882fbe02b9SBarry Smith #define __FUNCT__ "MatMPIDenseCopyFromPlapack"
10892fbe02b9SBarry Smith PetscErrorCode MatMPIDenseCopyFromPlapack(Mat F,Mat A)
10902fbe02b9SBarry Smith {
10912fbe02b9SBarry Smith   Mat_Plapack    *lu = (Mat_Plapack*)(F)->spptr;
10922fbe02b9SBarry Smith   PetscErrorCode ierr;
1093*79b0a62dSBarry Smith   PetscInt       M=A->cmap.N,m=A->rmap.n,rstart;
10942fbe02b9SBarry Smith   PetscScalar    *array;
10952fbe02b9SBarry Smith   PetscReal      one = 1.0;
10962fbe02b9SBarry Smith 
10972fbe02b9SBarry Smith   PetscFunctionBegin;
10982fbe02b9SBarry Smith   /* Copy F into A->lu->A */
1099*79b0a62dSBarry Smith   ierr = MatZeroEntries(A);CHKERRQ(ierr);
11002fbe02b9SBarry Smith   ierr = PLA_API_begin();CHKERRQ(ierr);
11012fbe02b9SBarry Smith   ierr = PLA_Obj_API_open(lu->A);CHKERRQ(ierr);
11022fbe02b9SBarry Smith   ierr = MatGetOwnershipRange(A,&rstart,PETSC_NULL);CHKERRQ(ierr);
11032fbe02b9SBarry Smith   ierr = MatGetArray(A,&array);CHKERRQ(ierr);
11042fbe02b9SBarry Smith   ierr = PLA_API_axpy_global_to_matrix(m,M, &one,lu->A,rstart,0,(void *)array,m);CHKERRQ(ierr);
11052fbe02b9SBarry Smith   ierr = MatRestoreArray(A,&array);CHKERRQ(ierr);
11062fbe02b9SBarry Smith   ierr = PLA_Obj_API_close(lu->A);CHKERRQ(ierr);
11072fbe02b9SBarry Smith   ierr = PLA_API_end();CHKERRQ(ierr);
11082fbe02b9SBarry Smith   lu->rstart = rstart;
11092fbe02b9SBarry Smith   PetscFunctionReturn(0);
11102fbe02b9SBarry Smith }
11112fbe02b9SBarry Smith 
11122fbe02b9SBarry Smith #undef __FUNCT__
11132fbe02b9SBarry Smith #define __FUNCT__ "MatMatMultNumeric_MPIDense_MPIDense"
11142fbe02b9SBarry Smith PetscErrorCode MatMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C)
11152fbe02b9SBarry Smith {
11162fbe02b9SBarry Smith   PetscErrorCode ierr;
11172fbe02b9SBarry Smith   Mat_Plapack    *luA = (Mat_Plapack*)A->spptr;
11182fbe02b9SBarry Smith   Mat_Plapack    *luB = (Mat_Plapack*)B->spptr;
11192fbe02b9SBarry Smith   Mat_Plapack    *luC = (Mat_Plapack*)C->spptr;
11202fbe02b9SBarry Smith   PLA_Obj        alpha = NULL,beta = NULL;
11212fbe02b9SBarry Smith 
11222fbe02b9SBarry Smith   PetscFunctionBegin;
11232fbe02b9SBarry Smith   ierr = MatMPIDenseCopyToPlapack(A,A);CHKERRQ(ierr);
11242fbe02b9SBarry Smith   ierr = MatMPIDenseCopyToPlapack(B,B);CHKERRQ(ierr);
11252fbe02b9SBarry Smith 
11262fbe02b9SBarry Smith   /* do the multiply in PLA  */
1127*79b0a62dSBarry Smith   ierr = PLA_Create_constants_conf_to(luA->A,NULL,NULL,&alpha);CHKERRQ(ierr);
1128*79b0a62dSBarry Smith   ierr = PLA_Create_constants_conf_to(luC->A,NULL,&beta,NULL);CHKERRQ(ierr);
1129*79b0a62dSBarry Smith   CHKMEMQ;
11302fbe02b9SBarry Smith 
11312fbe02b9SBarry Smith   ierr = PLA_Gemm(PLA_NO_TRANSPOSE,PLA_NO_TRANSPOSE,alpha,luA->A,luB->A,beta,luC->A);CHKERRQ(ierr);
1132*79b0a62dSBarry Smith   CHKMEMQ;
11332fbe02b9SBarry Smith   ierr = PLA_Obj_free(&alpha);CHKERRQ(ierr);
11342fbe02b9SBarry Smith   ierr = PLA_Obj_free(&beta);CHKERRQ(ierr);
11352fbe02b9SBarry Smith 
11362fbe02b9SBarry Smith   ierr = MatMPIDenseCopyFromPlapack(C,C);CHKERRQ(ierr);
11372fbe02b9SBarry Smith   PetscFunctionReturn(0);
11382fbe02b9SBarry Smith }
11392fbe02b9SBarry Smith 
11402fbe02b9SBarry Smith #undef __FUNCT__
11412fbe02b9SBarry Smith #define __FUNCT__ "MatMatMultSymbolic_MPIDense_MPIDense"
11422fbe02b9SBarry Smith PetscErrorCode MatMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat *C)
11432fbe02b9SBarry Smith {
11442fbe02b9SBarry Smith   PetscErrorCode ierr;
11452fbe02b9SBarry Smith   PetscInt       m=A->rmap.n,n=B->cmap.n;
11462fbe02b9SBarry Smith   Mat            Cmat;
11472fbe02b9SBarry Smith 
11482fbe02b9SBarry Smith   PetscFunctionBegin;
11492fbe02b9SBarry Smith   if (A->cmap.n != B->rmap.n) SETERRQ2(PETSC_ERR_ARG_SIZ,"A->cmap.n %d != B->rmap.n %d\n",A->cmap.n,B->rmap.n);
11502fbe02b9SBarry Smith   ierr = MatCreate(((PetscObject)B)->comm,&Cmat);CHKERRQ(ierr);
11512fbe02b9SBarry Smith   ierr = MatSetSizes(Cmat,m,n,A->rmap.N,B->cmap.N);CHKERRQ(ierr);
11522fbe02b9SBarry Smith   ierr = MatSetType(Cmat,MATMPIDENSE);CHKERRQ(ierr);
11532fbe02b9SBarry Smith   ierr = MatAssemblyBegin(Cmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
11542fbe02b9SBarry Smith   ierr = MatAssemblyEnd(Cmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
11552fbe02b9SBarry Smith   ierr = MatMPIDenseCreatePlapack(A);CHKERRQ(ierr);
11562fbe02b9SBarry Smith   ierr = MatMPIDenseCreatePlapack(B);CHKERRQ(ierr);
11572fbe02b9SBarry Smith   ierr = MatMPIDenseCreatePlapack(Cmat);CHKERRQ(ierr);
11582fbe02b9SBarry Smith   *C = Cmat;
11592fbe02b9SBarry Smith   PetscFunctionReturn(0);
11602fbe02b9SBarry Smith }
11612fbe02b9SBarry Smith 
11622fbe02b9SBarry Smith #undef __FUNCT__
11632fbe02b9SBarry Smith #define __FUNCT__ "MatMatMult_MPIDense_MPIDense"
11642fbe02b9SBarry Smith PetscErrorCode MatMatMult_MPIDense_MPIDense(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C)
11652fbe02b9SBarry Smith {
11662fbe02b9SBarry Smith   PetscErrorCode ierr;
11672fbe02b9SBarry Smith 
11682fbe02b9SBarry Smith   PetscFunctionBegin;
11692fbe02b9SBarry Smith   if (scall == MAT_INITIAL_MATRIX){
11702fbe02b9SBarry Smith     ierr = MatMatMultSymbolic_MPIDense_MPIDense(A,B,fill,C);CHKERRQ(ierr);
11712fbe02b9SBarry Smith   }
11722fbe02b9SBarry Smith   ierr = MatMatMultNumeric_MPIDense_MPIDense(A,B,*C);CHKERRQ(ierr);
11732fbe02b9SBarry Smith   PetscFunctionReturn(0);
11742fbe02b9SBarry Smith }
11752fbe02b9SBarry Smith 
11762fbe02b9SBarry Smith 
11772fbe02b9SBarry Smith #undef __FUNCT__
117801b82886SBarry Smith #define __FUNCT__ "MatSolve_MPIDense"
117901b82886SBarry Smith PetscErrorCode MatSolve_MPIDense(Mat A,Vec b,Vec x)
118001b82886SBarry Smith {
118104fea9ffSBarry Smith   MPI_Comm       comm = ((PetscObject)A)->comm,dummy_comm;
118201b82886SBarry Smith   Mat_Plapack    *lu = (Mat_Plapack*)A->spptr;
118301b82886SBarry Smith   PetscErrorCode ierr;
118401b82886SBarry Smith   PetscInt       M=A->rmap.N,m=A->rmap.n,rstart,i,j,*idx_pla,*idx_petsc,loc_m,loc_stride;
118501b82886SBarry Smith   PetscScalar    *array;
118601b82886SBarry Smith   PetscReal      one = 1.0;
1187aeccfd6fSBarry Smith   PetscMPIInt    size,r_rank,r_nproc,c_rank,c_nproc;;
118801b82886SBarry Smith   PLA_Obj        v_pla = NULL;
118901b82886SBarry Smith   PetscScalar    *loc_buf;
119001b82886SBarry Smith   Vec            loc_x;
119101b82886SBarry Smith 
119201b82886SBarry Smith   PetscFunctionBegin;
119301b82886SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
119401b82886SBarry Smith 
119501b82886SBarry Smith   /* Create PLAPACK vector objects, then copy b into PLAPACK b */
119662b4c0b3SBarry Smith   ierr = PLA_Mvector_create(lu->datatype,M,1,lu->templ,PLA_ALIGN_FIRST,&v_pla);CHKERRQ(ierr);
119762b4c0b3SBarry Smith   ierr = PLA_Obj_set_to_zero(v_pla);CHKERRQ(ierr);
119801b82886SBarry Smith 
119901b82886SBarry Smith   /* Copy b into rhs_pla */
120062b4c0b3SBarry Smith   ierr = PLA_API_begin();CHKERRQ(ierr);
120162b4c0b3SBarry Smith   ierr = PLA_Obj_API_open(v_pla);CHKERRQ(ierr);
120201b82886SBarry Smith   ierr = VecGetArray(b,&array);CHKERRQ(ierr);
120362b4c0b3SBarry Smith   ierr = PLA_API_axpy_vector_to_global(m,&one,(void *)array,1,v_pla,lu->rstart);CHKERRQ(ierr);
120401b82886SBarry Smith   ierr = VecRestoreArray(b,&array);CHKERRQ(ierr);
120562b4c0b3SBarry Smith   ierr = PLA_Obj_API_close(v_pla);CHKERRQ(ierr);
120662b4c0b3SBarry Smith   ierr = PLA_API_end();CHKERRQ(ierr);
120701b82886SBarry Smith 
120801b82886SBarry Smith   if (A->factor == FACTOR_LU){
120901b82886SBarry Smith     /* Apply the permutations to the right hand sides */
121062b4c0b3SBarry Smith     ierr = PLA_Apply_pivots_to_rows (v_pla,lu->pivots);CHKERRQ(ierr);
121101b82886SBarry Smith 
121201b82886SBarry Smith     /* Solve L y = b, overwriting b with y */
121362b4c0b3SBarry Smith     ierr = PLA_Trsv( PLA_LOWER_TRIANGULAR,PLA_NO_TRANSPOSE,PLA_UNIT_DIAG,lu->A,v_pla );CHKERRQ(ierr);
121401b82886SBarry Smith 
121501b82886SBarry Smith     /* Solve U x = y (=b), overwriting b with x */
121662b4c0b3SBarry Smith     ierr = PLA_Trsv( PLA_UPPER_TRIANGULAR,PLA_NO_TRANSPOSE,PLA_NONUNIT_DIAG,lu->A,v_pla );CHKERRQ(ierr);
121701b82886SBarry Smith   } else { /* FACTOR_CHOLESKY */
121862b4c0b3SBarry Smith     ierr = PLA_Trsv( PLA_LOWER_TRIANGULAR,PLA_NO_TRANSPOSE,PLA_NONUNIT_DIAG,lu->A,v_pla);CHKERRQ(ierr);
121962b4c0b3SBarry Smith     ierr = PLA_Trsv( PLA_LOWER_TRIANGULAR,(lu->datatype == MPI_DOUBLE ? PLA_TRANSPOSE : PLA_CONJUGATE_TRANSPOSE),PLA_NONUNIT_DIAG,lu->A,v_pla);CHKERRQ(ierr);
122001b82886SBarry Smith   }
122101b82886SBarry Smith 
122201b82886SBarry Smith   /* Copy PLAPACK x into Petsc vector x  */
122362b4c0b3SBarry Smith   ierr = PLA_Obj_local_length(v_pla, &loc_m);CHKERRQ(ierr);
122462b4c0b3SBarry Smith   ierr = PLA_Obj_local_buffer(v_pla, (void**)&loc_buf);CHKERRQ(ierr);
122562b4c0b3SBarry Smith   ierr = PLA_Obj_local_stride(v_pla, &loc_stride);CHKERRQ(ierr);
122601b82886SBarry Smith   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,loc_m*loc_stride,loc_buf,&loc_x);CHKERRQ(ierr);
122701b82886SBarry Smith   if (!lu->pla_solved){
122801b82886SBarry Smith 
122904fea9ffSBarry Smith     ierr = PLA_Temp_comm_row_info(lu->templ,&dummy_comm,&r_rank,&r_nproc);CHKERRQ(ierr);
123004fea9ffSBarry Smith     ierr = PLA_Temp_comm_col_info(lu->templ,&dummy_comm,&c_rank,&c_nproc);CHKERRQ(ierr);
123101b82886SBarry Smith     /* printf(" [%d] rank: %d %d, nproc: %d %d\n",rank,r_rank,c_rank,r_nproc,c_nproc); */
123201b82886SBarry Smith 
123301b82886SBarry Smith     /* Create IS and cts for VecScatterring */
123462b4c0b3SBarry Smith     ierr = PLA_Obj_local_length(v_pla, &loc_m);CHKERRQ(ierr);
123562b4c0b3SBarry Smith     ierr = PLA_Obj_local_stride(v_pla, &loc_stride);CHKERRQ(ierr);
123601b82886SBarry Smith     ierr = PetscMalloc((2*loc_m+1)*sizeof(PetscInt),&idx_pla);CHKERRQ(ierr);
123701b82886SBarry Smith     idx_petsc = idx_pla + loc_m;
123801b82886SBarry Smith 
123901b82886SBarry Smith     rstart = (r_rank*c_nproc+c_rank)*lu->nb;
124001b82886SBarry Smith     for (i=0; i<loc_m; i+=lu->nb){
124101b82886SBarry Smith       j = 0;
124201b82886SBarry Smith       while (j < lu->nb && i+j < loc_m){
124301b82886SBarry Smith         idx_petsc[i+j] = rstart + j; j++;
124401b82886SBarry Smith       }
124501b82886SBarry Smith       rstart += size*lu->nb;
124601b82886SBarry Smith     }
124701b82886SBarry Smith 
124801b82886SBarry Smith     for (i=0; i<loc_m; i++) idx_pla[i] = i*loc_stride;
124901b82886SBarry Smith 
125001b82886SBarry Smith     ierr = ISCreateGeneral(PETSC_COMM_SELF,loc_m,idx_pla,&lu->is_pla);CHKERRQ(ierr);
125101b82886SBarry Smith     ierr = ISCreateGeneral(PETSC_COMM_SELF,loc_m,idx_petsc,&lu->is_petsc);CHKERRQ(ierr);
125201b82886SBarry Smith     ierr = PetscFree(idx_pla);CHKERRQ(ierr);
125301b82886SBarry Smith     ierr = VecScatterCreate(loc_x,lu->is_pla,x,lu->is_petsc,&lu->ctx);CHKERRQ(ierr);
125401b82886SBarry Smith   }
125501b82886SBarry Smith   ierr = VecScatterBegin(lu->ctx,loc_x,x,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
125601b82886SBarry Smith   ierr = VecScatterEnd(lu->ctx,loc_x,x,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
125701b82886SBarry Smith 
125801b82886SBarry Smith   /* Free data */
125901b82886SBarry Smith   ierr = VecDestroy(loc_x);CHKERRQ(ierr);
126062b4c0b3SBarry Smith   ierr = PLA_Obj_free(&v_pla);CHKERRQ(ierr);
126101b82886SBarry Smith 
126201b82886SBarry Smith   lu->pla_solved = PETSC_TRUE;
126301b82886SBarry Smith   PetscFunctionReturn(0);
126401b82886SBarry Smith }
126501b82886SBarry Smith 
126601b82886SBarry Smith #undef __FUNCT__
126701b82886SBarry Smith #define __FUNCT__ "MatLUFactorNumeric_MPIDense"
126801b82886SBarry Smith PetscErrorCode MatLUFactorNumeric_MPIDense(Mat A,MatFactorInfo *info,Mat *F)
126901b82886SBarry Smith {
127001b82886SBarry Smith   Mat_Plapack    *lu = (Mat_Plapack*)(*F)->spptr;
127101b82886SBarry Smith   PetscErrorCode ierr;
1272eae6fb2eSBarry Smith   PetscInt       info_pla;
127301b82886SBarry Smith 
127401b82886SBarry Smith   PetscFunctionBegin;
127562b4c0b3SBarry Smith   ierr = PLA_Obj_set_to_zero(lu->A);CHKERRQ(ierr);
127601b82886SBarry Smith 
1277eae6fb2eSBarry Smith   /* Copy A into F->lu->A */
1278eae6fb2eSBarry Smith   ierr = MatMPIDenseCopyToPlapack(A,*F);CHKERRQ(ierr);
127901b82886SBarry Smith 
128001b82886SBarry Smith   /* Factor P A -> L U overwriting lower triangular portion of A with L, upper, U */
128101b82886SBarry Smith   info_pla = PLA_LU(lu->A,lu->pivots);
1282eae6fb2eSBarry Smith   if (info_pla) SETERRQ1(PETSC_ERR_MAT_LU_ZRPVT,"Zero pivot encountered at row %d from PLA_LU()",info_pla);
128301b82886SBarry Smith 
1284eae6fb2eSBarry Smith   (*F)->assembled    = PETSC_TRUE;
128501b82886SBarry Smith   PetscFunctionReturn(0);
128601b82886SBarry Smith }
128701b82886SBarry Smith 
128801b82886SBarry Smith #undef __FUNCT__
128901b82886SBarry Smith #define __FUNCT__ "MatCholeskyFactorNumeric_MPIDense"
129001b82886SBarry Smith PetscErrorCode MatCholeskyFactorNumeric_MPIDense(Mat A,MatFactorInfo *info,Mat *F)
129101b82886SBarry Smith {
129201b82886SBarry Smith   Mat_Plapack    *lu = (Mat_Plapack*)(*F)->spptr;
129301b82886SBarry Smith   PetscErrorCode ierr;
1294eae6fb2eSBarry Smith   PetscInt       info_pla;
129501b82886SBarry Smith 
129601b82886SBarry Smith   PetscFunctionBegin;
1297e0fbc2eeSBarry Smith 
1298eae6fb2eSBarry Smith   /* Copy A into F->lu->A */
1299eae6fb2eSBarry Smith   ierr = MatMPIDenseCopyToPlapack(A,*F);CHKERRQ(ierr);
130001b82886SBarry Smith 
130101b82886SBarry Smith   /* Factor P A -> Chol */
130201b82886SBarry Smith   info_pla = PLA_Chol(PLA_LOWER_TRIANGULAR,lu->A);
1303eae6fb2eSBarry Smith   if (info_pla) SETERRQ1( PETSC_ERR_MAT_CH_ZRPVT,"Nonpositive definite matrix detected at row %d from PLA_Chol()",info_pla);
130401b82886SBarry Smith 
1305eae6fb2eSBarry Smith   (*F)->assembled = PETSC_TRUE;
130601b82886SBarry Smith   PetscFunctionReturn(0);
130701b82886SBarry Smith }
130801b82886SBarry Smith 
1309eae6fb2eSBarry Smith 
131001b82886SBarry Smith #undef __FUNCT__
131101b82886SBarry Smith #define __FUNCT__ "MatFactorSymbolic_MPIDense_Private"
131201b82886SBarry Smith PetscErrorCode MatFactorSymbolic_MPIDense_Private(Mat A,MatFactorInfo *info,Mat *F)
131301b82886SBarry Smith {
131401b82886SBarry Smith   PetscErrorCode ierr;
131501b82886SBarry Smith 
131601b82886SBarry Smith   PetscFunctionBegin;
131701b82886SBarry Smith   /* Create the factorization matrix */
1318eae6fb2eSBarry Smith   ierr = MatCreate(((PetscObject)A)->comm,F);CHKERRQ(ierr);
1319eae6fb2eSBarry Smith   ierr = MatSetSizes(*F,A->rmap.n,A->cmap.n,A->rmap.N,A->cmap.N);CHKERRQ(ierr);
1320eae6fb2eSBarry Smith   ierr = MatSetType(*F,((PetscObject)A)->type_name);CHKERRQ(ierr);
1321eae6fb2eSBarry Smith   ierr = MatMPIDenseCreatePlapack(*F);CHKERRQ(ierr);
132201b82886SBarry Smith   PetscFunctionReturn(0);
132301b82886SBarry Smith }
132401b82886SBarry Smith 
132501b82886SBarry Smith /* Note the Petsc r and c permutations are ignored */
132601b82886SBarry Smith #undef __FUNCT__
132701b82886SBarry Smith #define __FUNCT__ "MatLUFactorSymbolic_MPIDense"
132801b82886SBarry Smith PetscErrorCode MatLUFactorSymbolic_MPIDense(Mat A,IS r,IS c,MatFactorInfo *info,Mat *F)
132901b82886SBarry Smith {
133001b82886SBarry Smith   PetscErrorCode ierr;
1331e1156936SBarry Smith   PetscInt       M = A->rmap.N;
1332e1156936SBarry Smith   Mat_Plapack    *lu;
133301b82886SBarry Smith 
133401b82886SBarry Smith   PetscFunctionBegin;
133501b82886SBarry Smith   ierr = MatFactorSymbolic_MPIDense_Private(A,info,F);CHKERRQ(ierr);
1336e1156936SBarry Smith   lu = (Mat_Plapack*)(*F)->spptr;
1337e1156936SBarry Smith   ierr = PLA_Mvector_create(MPI_INT,M,1,lu->templ,PLA_ALIGN_FIRST,&lu->pivots);CHKERRQ(ierr);
133801b82886SBarry Smith   (*F)->factor = FACTOR_LU;
133901b82886SBarry Smith   PetscFunctionReturn(0);
134001b82886SBarry Smith }
134101b82886SBarry Smith 
134201b82886SBarry Smith /* Note the Petsc perm permutation is ignored */
134301b82886SBarry Smith #undef __FUNCT__
134401b82886SBarry Smith #define __FUNCT__ "MatCholeskyFactorSymbolic_MPIDense"
134501b82886SBarry Smith PetscErrorCode MatCholeskyFactorSymbolic_MPIDense(Mat A,IS perm,MatFactorInfo *info,Mat *F)
134601b82886SBarry Smith {
134701b82886SBarry Smith   PetscErrorCode ierr;
134801b82886SBarry Smith   PetscTruth     issymmetric,set;
134901b82886SBarry Smith 
135001b82886SBarry Smith   PetscFunctionBegin;
135101b82886SBarry Smith   ierr = MatIsSymmetricKnown(A,&set,&issymmetric); CHKERRQ(ierr);
135201b82886SBarry Smith   if (!set || !issymmetric) SETERRQ(PETSC_ERR_USER,"Matrix must be set as MAT_SYMMETRIC for CholeskyFactor()");
135301b82886SBarry Smith   ierr = MatFactorSymbolic_MPIDense_Private(A,info,F);CHKERRQ(ierr);
135401b82886SBarry Smith   (*F)->factor = FACTOR_CHOLESKY;
135501b82886SBarry Smith   PetscFunctionReturn(0);
135601b82886SBarry Smith }
135701b82886SBarry Smith #endif
135801b82886SBarry Smith 
13598965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/
136009dc0095SBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIDense,
136109dc0095SBarry Smith        MatGetRow_MPIDense,
136209dc0095SBarry Smith        MatRestoreRow_MPIDense,
136309dc0095SBarry Smith        MatMult_MPIDense,
136497304618SKris Buschelman /* 4*/ MatMultAdd_MPIDense,
13657c922b88SBarry Smith        MatMultTranspose_MPIDense,
13667c922b88SBarry Smith        MatMultTransposeAdd_MPIDense,
136701b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK)
136801b82886SBarry Smith        MatSolve_MPIDense,
136901b82886SBarry Smith #else
13708965ea79SLois Curfman McInnes        0,
137101b82886SBarry Smith #endif
137209dc0095SBarry Smith        0,
137309dc0095SBarry Smith        0,
137497304618SKris Buschelman /*10*/ 0,
137509dc0095SBarry Smith        0,
137609dc0095SBarry Smith        0,
137709dc0095SBarry Smith        0,
137809dc0095SBarry Smith        MatTranspose_MPIDense,
137997304618SKris Buschelman /*15*/ MatGetInfo_MPIDense,
13806e4ee0c6SHong Zhang        MatEqual_MPIDense,
138109dc0095SBarry Smith        MatGetDiagonal_MPIDense,
13825b2fa520SLois Curfman McInnes        MatDiagonalScale_MPIDense,
138309dc0095SBarry Smith        MatNorm_MPIDense,
138497304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIDense,
138509dc0095SBarry Smith        MatAssemblyEnd_MPIDense,
138609dc0095SBarry Smith        0,
138709dc0095SBarry Smith        MatSetOption_MPIDense,
138809dc0095SBarry Smith        MatZeroEntries_MPIDense,
138997304618SKris Buschelman /*25*/ MatZeroRows_MPIDense,
139001b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK)
13910ad19415SHong Zhang        MatLUFactorSymbolic_MPIDense,
139201b82886SBarry Smith        MatLUFactorNumeric_MPIDense,
13930ad19415SHong Zhang        MatCholeskyFactorSymbolic_MPIDense,
139401b82886SBarry Smith        MatCholeskyFactorNumeric_MPIDense,
139501b82886SBarry Smith #else
1396919b68f7SBarry Smith        0,
139701b82886SBarry Smith        0,
139801b82886SBarry Smith        0,
139901b82886SBarry Smith        0,
140001b82886SBarry Smith #endif
140197304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPIDense,
1402273d9f13SBarry Smith        0,
140309dc0095SBarry Smith        0,
140409dc0095SBarry Smith        MatGetArray_MPIDense,
140509dc0095SBarry Smith        MatRestoreArray_MPIDense,
140697304618SKris Buschelman /*35*/ MatDuplicate_MPIDense,
140709dc0095SBarry Smith        0,
140809dc0095SBarry Smith        0,
140909dc0095SBarry Smith        0,
141009dc0095SBarry Smith        0,
141197304618SKris Buschelman /*40*/ 0,
14122ce60cd0SSatish Balay        MatGetSubMatrices_MPIDense,
141309dc0095SBarry Smith        0,
141409dc0095SBarry Smith        MatGetValues_MPIDense,
141509dc0095SBarry Smith        0,
141697304618SKris Buschelman /*45*/ 0,
141709dc0095SBarry Smith        MatScale_MPIDense,
141809dc0095SBarry Smith        0,
141909dc0095SBarry Smith        0,
142009dc0095SBarry Smith        0,
1421521d7252SBarry Smith /*50*/ 0,
142209dc0095SBarry Smith        0,
142309dc0095SBarry Smith        0,
142409dc0095SBarry Smith        0,
142509dc0095SBarry Smith        0,
142697304618SKris Buschelman /*55*/ 0,
142709dc0095SBarry Smith        0,
142809dc0095SBarry Smith        0,
142909dc0095SBarry Smith        0,
143009dc0095SBarry Smith        0,
143197304618SKris Buschelman /*60*/ MatGetSubMatrix_MPIDense,
1432b9b97703SBarry Smith        MatDestroy_MPIDense,
1433b9b97703SBarry Smith        MatView_MPIDense,
1434357abbc8SBarry Smith        0,
143597304618SKris Buschelman        0,
143697304618SKris Buschelman /*65*/ 0,
143797304618SKris Buschelman        0,
143897304618SKris Buschelman        0,
143997304618SKris Buschelman        0,
144097304618SKris Buschelman        0,
144197304618SKris Buschelman /*70*/ 0,
144297304618SKris Buschelman        0,
144397304618SKris Buschelman        0,
144497304618SKris Buschelman        0,
144597304618SKris Buschelman        0,
144697304618SKris Buschelman /*75*/ 0,
144797304618SKris Buschelman        0,
144897304618SKris Buschelman        0,
144997304618SKris Buschelman        0,
145097304618SKris Buschelman        0,
145197304618SKris Buschelman /*80*/ 0,
145297304618SKris Buschelman        0,
145397304618SKris Buschelman        0,
145497304618SKris Buschelman        0,
1455865e5f61SKris Buschelman /*84*/ MatLoad_MPIDense,
1456865e5f61SKris Buschelman        0,
1457865e5f61SKris Buschelman        0,
1458865e5f61SKris Buschelman        0,
1459865e5f61SKris Buschelman        0,
1460865e5f61SKris Buschelman        0,
14612fbe02b9SBarry Smith /*90*/
14622fbe02b9SBarry Smith #if defined(PETSC_HAVE_PLAPACK)
14632fbe02b9SBarry Smith        MatMatMult_MPIDense_MPIDense,
14644ae313f4SHong Zhang        MatMatMultSymbolic_MPIDense_MPIDense,
14652fbe02b9SBarry Smith        MatMatMultNumeric_MPIDense_MPIDense,
14662fbe02b9SBarry Smith #else
1467865e5f61SKris Buschelman        0,
1468865e5f61SKris Buschelman        0,
1469865e5f61SKris Buschelman        0,
14702fbe02b9SBarry Smith #endif
14712fbe02b9SBarry Smith        0,
1472865e5f61SKris Buschelman /*95*/ 0,
1473865e5f61SKris Buschelman        0,
1474865e5f61SKris Buschelman        0,
1475865e5f61SKris Buschelman        0};
14768965ea79SLois Curfman McInnes 
1477273d9f13SBarry Smith EXTERN_C_BEGIN
14784a2ae208SSatish Balay #undef __FUNCT__
1479a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIDenseSetPreallocation_MPIDense"
1480be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIDenseSetPreallocation_MPIDense(Mat mat,PetscScalar *data)
1481a23d5eceSKris Buschelman {
1482a23d5eceSKris Buschelman   Mat_MPIDense   *a;
1483dfbe8321SBarry Smith   PetscErrorCode ierr;
1484a23d5eceSKris Buschelman 
1485a23d5eceSKris Buschelman   PetscFunctionBegin;
1486a23d5eceSKris Buschelman   mat->preallocated = PETSC_TRUE;
1487a23d5eceSKris Buschelman   /* Note:  For now, when data is specified above, this assumes the user correctly
1488a23d5eceSKris Buschelman    allocates the local dense storage space.  We should add error checking. */
1489a23d5eceSKris Buschelman 
1490a23d5eceSKris Buschelman   a    = (Mat_MPIDense*)mat->data;
1491f69a0ea3SMatthew Knepley   ierr = MatCreate(PETSC_COMM_SELF,&a->A);CHKERRQ(ierr);
1492899cda47SBarry Smith   ierr = MatSetSizes(a->A,mat->rmap.n,mat->cmap.N,mat->rmap.n,mat->cmap.N);CHKERRQ(ierr);
14935c5985e7SKris Buschelman   ierr = MatSetType(a->A,MATSEQDENSE);CHKERRQ(ierr);
14945c5985e7SKris Buschelman   ierr = MatSeqDenseSetPreallocation(a->A,data);CHKERRQ(ierr);
149552e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr);
1496a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1497a23d5eceSKris Buschelman }
1498a23d5eceSKris Buschelman EXTERN_C_END
1499a23d5eceSKris Buschelman 
15007878bbefSBarry Smith EXTERN_C_BEGIN
15017878bbefSBarry Smith #if defined(PETSC_HAVE_PLAPACK)
15027878bbefSBarry Smith #undef __FUNCT__
15037878bbefSBarry Smith #define __FUNCT__ "MatSetSolverType_MPIDense_PLAPACK"
15047878bbefSBarry Smith PetscErrorCode PETSCMAT_DLLEXPORT MatSetSolverType_MPIDense_PLAPACK(Mat mat,const char *type)
15057878bbefSBarry Smith {
15067878bbefSBarry Smith   PetscFunctionBegin;
15077878bbefSBarry Smith   /* dummy function so that -mat_solver_type plapack or MatSetSolverType(mat,"plapack"); silently work (since PLAPACK is on by default) */
15087878bbefSBarry Smith   PetscFunctionReturn(0);
15097878bbefSBarry Smith }
15107878bbefSBarry Smith #endif
15117a667e6fSSatish Balay EXTERN_C_END
15127878bbefSBarry Smith 
15130bad9183SKris Buschelman /*MC
1514fafad747SKris Buschelman    MATMPIDENSE - MATMPIDENSE = "mpidense" - A matrix type to be used for distributed dense matrices.
15150bad9183SKris Buschelman 
15160bad9183SKris Buschelman    Options Database Keys:
15170bad9183SKris Buschelman . -mat_type mpidense - sets the matrix type to "mpidense" during a call to MatSetFromOptions()
15180bad9183SKris Buschelman 
15190bad9183SKris Buschelman   Level: beginner
15200bad9183SKris Buschelman 
15217878bbefSBarry Smith   MATMPIDENSE matrices may use direct solvers (LU, Cholesky, and QR)
15227878bbefSBarry Smith   for parallel dense matrices via the external package PLAPACK, if PLAPACK is installed
15237878bbefSBarry Smith   (run config/configure.py with the option --download-plapack)
15247878bbefSBarry Smith 
15257878bbefSBarry Smith 
15267878bbefSBarry Smith   Options Database Keys:
15277878bbefSBarry Smith . -mat_plapack_nprows <n> - number of rows in processor partition
15287878bbefSBarry Smith . -mat_plapack_npcols <n> - number of columns in processor partition
15297878bbefSBarry Smith . -mat_plapack_nb <n> - block size of template vector
15307878bbefSBarry Smith . -mat_plapack_nb_alg <n> - algorithmic block size
15317878bbefSBarry Smith - -mat_plapack_ckerror <n> - error checking flag
15327878bbefSBarry Smith 
15337878bbefSBarry Smith .seealso: MatCreateMPIDense(), MATDENSE, MATSEQDENSE
15340bad9183SKris Buschelman M*/
15350bad9183SKris Buschelman 
1536a23d5eceSKris Buschelman EXTERN_C_BEGIN
1537a23d5eceSKris Buschelman #undef __FUNCT__
15384a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIDense"
1539be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPIDense(Mat mat)
1540273d9f13SBarry Smith {
1541273d9f13SBarry Smith   Mat_MPIDense   *a;
1542dfbe8321SBarry Smith   PetscErrorCode ierr;
1543273d9f13SBarry Smith 
1544273d9f13SBarry Smith   PetscFunctionBegin;
154538f2d2fdSLisandro Dalcin   ierr              = PetscNewLog(mat,Mat_MPIDense,&a);CHKERRQ(ierr);
1546b0a32e0cSBarry Smith   mat->data         = (void*)a;
1547273d9f13SBarry Smith   ierr              = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1548273d9f13SBarry Smith   mat->factor       = 0;
1549273d9f13SBarry Smith   mat->mapping      = 0;
1550273d9f13SBarry Smith 
1551273d9f13SBarry Smith   mat->insertmode = NOT_SET_VALUES;
15527adad957SLisandro Dalcin   ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&a->rank);CHKERRQ(ierr);
15537adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)mat)->comm,&a->size);CHKERRQ(ierr);
1554273d9f13SBarry Smith 
1555899cda47SBarry Smith   mat->rmap.bs = mat->cmap.bs = 1;
15566148ca0dSBarry Smith   ierr = PetscMapSetUp(&mat->rmap);CHKERRQ(ierr);
15576148ca0dSBarry Smith   ierr = PetscMapSetUp(&mat->cmap);CHKERRQ(ierr);
1558899cda47SBarry Smith   a->nvec = mat->cmap.n;
1559273d9f13SBarry Smith 
1560273d9f13SBarry Smith   /* build cache for off array entries formed */
1561273d9f13SBarry Smith   a->donotstash = PETSC_FALSE;
15627adad957SLisandro Dalcin   ierr = MatStashCreate_Private(((PetscObject)mat)->comm,1,&mat->stash);CHKERRQ(ierr);
1563273d9f13SBarry Smith 
1564273d9f13SBarry Smith   /* stuff used for matrix vector multiply */
1565273d9f13SBarry Smith   a->lvec        = 0;
1566273d9f13SBarry Smith   a->Mvctx       = 0;
1567273d9f13SBarry Smith   a->roworiented = PETSC_TRUE;
1568273d9f13SBarry Smith 
1569273d9f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatGetDiagonalBlock_C",
1570273d9f13SBarry Smith                                      "MatGetDiagonalBlock_MPIDense",
1571273d9f13SBarry Smith                                      MatGetDiagonalBlock_MPIDense);CHKERRQ(ierr);
1572a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMPIDenseSetPreallocation_C",
1573a23d5eceSKris Buschelman                                      "MatMPIDenseSetPreallocation_MPIDense",
1574a23d5eceSKris Buschelman                                      MatMPIDenseSetPreallocation_MPIDense);CHKERRQ(ierr);
15754ae313f4SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMatMult_mpiaij_mpidense_C",
15764ae313f4SHong Zhang                                      "MatMatMult_MPIAIJ_MPIDense",
15774ae313f4SHong Zhang                                       MatMatMult_MPIAIJ_MPIDense);CHKERRQ(ierr);
15784ae313f4SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C",
15794ae313f4SHong Zhang                                      "MatMatMultSymbolic_MPIAIJ_MPIDense",
15804ae313f4SHong Zhang                                       MatMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr);
15814ae313f4SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C",
15824ae313f4SHong Zhang                                      "MatMatMultNumeric_MPIAIJ_MPIDense",
15834ae313f4SHong Zhang                                       MatMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr);
15847878bbefSBarry Smith #if defined(PETSC_HAVE_PLAPACK)
15857878bbefSBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatSetSolverType_mpidense_plapack_C",
15867878bbefSBarry Smith                                      "MatSetSolverType_MPIDense_PLAPACK",
15877878bbefSBarry Smith                                       MatSetSolverType_MPIDense_PLAPACK);CHKERRQ(ierr);
15887878bbefSBarry Smith #endif
158938aed534SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)mat,MATMPIDENSE);CHKERRQ(ierr);
159001b82886SBarry Smith 
1591273d9f13SBarry Smith   PetscFunctionReturn(0);
1592273d9f13SBarry Smith }
1593273d9f13SBarry Smith EXTERN_C_END
1594273d9f13SBarry Smith 
1595209238afSKris Buschelman /*MC
1596002d173eSKris Buschelman    MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices.
1597209238afSKris Buschelman 
1598209238afSKris Buschelman    This matrix type is identical to MATSEQDENSE when constructed with a single process communicator,
1599209238afSKris Buschelman    and MATMPIDENSE otherwise.
1600209238afSKris Buschelman 
1601209238afSKris Buschelman    Options Database Keys:
1602209238afSKris Buschelman . -mat_type dense - sets the matrix type to "dense" during a call to MatSetFromOptions()
1603209238afSKris Buschelman 
1604209238afSKris Buschelman   Level: beginner
1605209238afSKris Buschelman 
160601b82886SBarry Smith 
1607209238afSKris Buschelman .seealso: MatCreateMPIDense,MATSEQDENSE,MATMPIDENSE
1608209238afSKris Buschelman M*/
1609209238afSKris Buschelman 
1610209238afSKris Buschelman EXTERN_C_BEGIN
1611209238afSKris Buschelman #undef __FUNCT__
1612209238afSKris Buschelman #define __FUNCT__ "MatCreate_Dense"
1613be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_Dense(Mat A)
1614dfbe8321SBarry Smith {
16156849ba73SBarry Smith   PetscErrorCode ierr;
161613f74950SBarry Smith   PetscMPIInt    size;
1617209238afSKris Buschelman 
1618209238afSKris Buschelman   PetscFunctionBegin;
16197adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr);
1620209238afSKris Buschelman   if (size == 1) {
1621209238afSKris Buschelman     ierr = MatSetType(A,MATSEQDENSE);CHKERRQ(ierr);
1622209238afSKris Buschelman   } else {
1623209238afSKris Buschelman     ierr = MatSetType(A,MATMPIDENSE);CHKERRQ(ierr);
1624209238afSKris Buschelman   }
1625209238afSKris Buschelman   PetscFunctionReturn(0);
1626209238afSKris Buschelman }
1627209238afSKris Buschelman EXTERN_C_END
1628209238afSKris Buschelman 
16294a2ae208SSatish Balay #undef __FUNCT__
16304a2ae208SSatish Balay #define __FUNCT__ "MatMPIDenseSetPreallocation"
1631273d9f13SBarry Smith /*@C
1632273d9f13SBarry Smith    MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries
1633273d9f13SBarry Smith 
1634273d9f13SBarry Smith    Not collective
1635273d9f13SBarry Smith 
1636273d9f13SBarry Smith    Input Parameters:
1637273d9f13SBarry Smith .  A - the matrix
1638273d9f13SBarry Smith -  data - optional location of matrix data.  Set data=PETSC_NULL for PETSc
1639273d9f13SBarry Smith    to control all matrix memory allocation.
1640273d9f13SBarry Smith 
1641273d9f13SBarry Smith    Notes:
1642273d9f13SBarry Smith    The dense format is fully compatible with standard Fortran 77
1643273d9f13SBarry Smith    storage by columns.
1644273d9f13SBarry Smith 
1645273d9f13SBarry Smith    The data input variable is intended primarily for Fortran programmers
1646273d9f13SBarry Smith    who wish to allocate their own matrix memory space.  Most users should
1647273d9f13SBarry Smith    set data=PETSC_NULL.
1648273d9f13SBarry Smith 
1649273d9f13SBarry Smith    Level: intermediate
1650273d9f13SBarry Smith 
1651273d9f13SBarry Smith .keywords: matrix,dense, parallel
1652273d9f13SBarry Smith 
1653273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues()
1654273d9f13SBarry Smith @*/
1655be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIDenseSetPreallocation(Mat mat,PetscScalar *data)
1656273d9f13SBarry Smith {
1657dfbe8321SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscScalar *);
1658273d9f13SBarry Smith 
1659273d9f13SBarry Smith   PetscFunctionBegin;
1660565567f0SKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
1661a23d5eceSKris Buschelman   if (f) {
1662a23d5eceSKris Buschelman     ierr = (*f)(mat,data);CHKERRQ(ierr);
1663a23d5eceSKris Buschelman   }
1664273d9f13SBarry Smith   PetscFunctionReturn(0);
1665273d9f13SBarry Smith }
1666273d9f13SBarry Smith 
16674a2ae208SSatish Balay #undef __FUNCT__
16684a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPIDense"
16698965ea79SLois Curfman McInnes /*@C
167039ddd567SLois Curfman McInnes    MatCreateMPIDense - Creates a sparse parallel matrix in dense format.
16718965ea79SLois Curfman McInnes 
1672db81eaa0SLois Curfman McInnes    Collective on MPI_Comm
1673db81eaa0SLois Curfman McInnes 
16748965ea79SLois Curfman McInnes    Input Parameters:
1675db81eaa0SLois Curfman McInnes +  comm - MPI communicator
16768965ea79SLois Curfman McInnes .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1677db81eaa0SLois Curfman McInnes .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
16788965ea79SLois Curfman McInnes .  M - number of global rows (or PETSC_DECIDE to have calculated if m is given)
1679db81eaa0SLois Curfman McInnes .  N - number of global columns (or PETSC_DECIDE to have calculated if n is given)
16807f5ff6fdSBarry Smith -  data - optional location of matrix data.  Set data=PETSC_NULL (PETSC_NULL_SCALAR for Fortran users) for PETSc
1681dfc5480cSLois Curfman McInnes    to control all matrix memory allocation.
16828965ea79SLois Curfman McInnes 
16838965ea79SLois Curfman McInnes    Output Parameter:
1684477f1c0bSLois Curfman McInnes .  A - the matrix
16858965ea79SLois Curfman McInnes 
1686b259b22eSLois Curfman McInnes    Notes:
168739ddd567SLois Curfman McInnes    The dense format is fully compatible with standard Fortran 77
168839ddd567SLois Curfman McInnes    storage by columns.
16898965ea79SLois Curfman McInnes 
169018f449edSLois Curfman McInnes    The data input variable is intended primarily for Fortran programmers
169118f449edSLois Curfman McInnes    who wish to allocate their own matrix memory space.  Most users should
16927f5ff6fdSBarry Smith    set data=PETSC_NULL (PETSC_NULL_SCALAR for Fortran users).
169318f449edSLois Curfman McInnes 
16948965ea79SLois Curfman McInnes    The user MUST specify either the local or global matrix dimensions
16958965ea79SLois Curfman McInnes    (possibly both).
16968965ea79SLois Curfman McInnes 
1697027ccd11SLois Curfman McInnes    Level: intermediate
1698027ccd11SLois Curfman McInnes 
169939ddd567SLois Curfman McInnes .keywords: matrix,dense, parallel
17008965ea79SLois Curfman McInnes 
170139ddd567SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues()
17028965ea79SLois Curfman McInnes @*/
1703be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPIDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A)
17048965ea79SLois Curfman McInnes {
17056849ba73SBarry Smith   PetscErrorCode ierr;
170613f74950SBarry Smith   PetscMPIInt    size;
17078965ea79SLois Curfman McInnes 
17083a40ed3dSBarry Smith   PetscFunctionBegin;
1709f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
1710f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
1711273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
1712273d9f13SBarry Smith   if (size > 1) {
1713273d9f13SBarry Smith     ierr = MatSetType(*A,MATMPIDENSE);CHKERRQ(ierr);
1714273d9f13SBarry Smith     ierr = MatMPIDenseSetPreallocation(*A,data);CHKERRQ(ierr);
1715273d9f13SBarry Smith   } else {
1716273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr);
1717273d9f13SBarry Smith     ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr);
17188c469469SLois Curfman McInnes   }
17193a40ed3dSBarry Smith   PetscFunctionReturn(0);
17208965ea79SLois Curfman McInnes }
17218965ea79SLois Curfman McInnes 
17224a2ae208SSatish Balay #undef __FUNCT__
17234a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIDense"
17246849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat)
17258965ea79SLois Curfman McInnes {
17268965ea79SLois Curfman McInnes   Mat            mat;
17273501a2bdSLois Curfman McInnes   Mat_MPIDense   *a,*oldmat = (Mat_MPIDense*)A->data;
1728dfbe8321SBarry Smith   PetscErrorCode ierr;
17298965ea79SLois Curfman McInnes 
17303a40ed3dSBarry Smith   PetscFunctionBegin;
17318965ea79SLois Curfman McInnes   *newmat       = 0;
17327adad957SLisandro Dalcin   ierr = MatCreate(((PetscObject)A)->comm,&mat);CHKERRQ(ierr);
1733899cda47SBarry Smith   ierr = MatSetSizes(mat,A->rmap.n,A->cmap.n,A->rmap.N,A->cmap.N);CHKERRQ(ierr);
17347adad957SLisandro Dalcin   ierr = MatSetType(mat,((PetscObject)A)->type_name);CHKERRQ(ierr);
1735834f8fabSBarry Smith   a                 = (Mat_MPIDense*)mat->data;
1736e04c1aa4SHong Zhang   ierr              = PetscMemcpy(mat->ops,A->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
17373501a2bdSLois Curfman McInnes   mat->factor       = A->factor;
1738c456f294SBarry Smith   mat->assembled    = PETSC_TRUE;
1739273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
17408965ea79SLois Curfman McInnes 
1741899cda47SBarry Smith   mat->rmap.rstart     = A->rmap.rstart;
1742899cda47SBarry Smith   mat->rmap.rend       = A->rmap.rend;
17438965ea79SLois Curfman McInnes   a->size              = oldmat->size;
17448965ea79SLois Curfman McInnes   a->rank              = oldmat->rank;
1745e0fa3b82SLois Curfman McInnes   mat->insertmode      = NOT_SET_VALUES;
1746b9b97703SBarry Smith   a->nvec              = oldmat->nvec;
17473782ba37SSatish Balay   a->donotstash        = oldmat->donotstash;
1748e04c1aa4SHong Zhang 
1749899cda47SBarry Smith   ierr = PetscMemcpy(mat->rmap.range,A->rmap.range,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr);
1750899cda47SBarry Smith   ierr = PetscMemcpy(mat->cmap.range,A->cmap.range,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr);
17517adad957SLisandro Dalcin   ierr = MatStashCreate_Private(((PetscObject)A)->comm,1,&mat->stash);CHKERRQ(ierr);
17528965ea79SLois Curfman McInnes 
1753329f5518SBarry Smith   ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr);
17545609ef8eSBarry Smith   ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
175552e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr);
175601b82886SBarry Smith 
175701b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK)
175801b82886SBarry Smith   ierr = PetscMemcpy(mat->spptr,A->spptr,sizeof(Mat_Plapack));CHKERRQ(ierr);
175901b82886SBarry Smith #endif
17608965ea79SLois Curfman McInnes   *newmat = mat;
17613a40ed3dSBarry Smith   PetscFunctionReturn(0);
17628965ea79SLois Curfman McInnes }
17638965ea79SLois Curfman McInnes 
1764e090d566SSatish Balay #include "petscsys.h"
17658965ea79SLois Curfman McInnes 
17664a2ae208SSatish Balay #undef __FUNCT__
17674a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIDense_DenseInFile"
1768f69a0ea3SMatthew Knepley PetscErrorCode MatLoad_MPIDense_DenseInFile(MPI_Comm comm,PetscInt fd,PetscInt M,PetscInt N, MatType type,Mat *newmat)
176990ace30eSBarry Smith {
17706849ba73SBarry Smith   PetscErrorCode ierr;
177132dcc486SBarry Smith   PetscMPIInt    rank,size;
177213f74950SBarry Smith   PetscInt       *rowners,i,m,nz,j;
177387828ca2SBarry Smith   PetscScalar    *array,*vals,*vals_ptr;
177490ace30eSBarry Smith   MPI_Status     status;
177590ace30eSBarry Smith 
17763a40ed3dSBarry Smith   PetscFunctionBegin;
1777d132466eSBarry Smith   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
1778d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
177990ace30eSBarry Smith 
178090ace30eSBarry Smith   /* determine ownership of all rows */
178190ace30eSBarry Smith   m          = M/size + ((M % size) > rank);
178213f74950SBarry Smith   ierr       = PetscMalloc((size+2)*sizeof(PetscInt),&rowners);CHKERRQ(ierr);
178313f74950SBarry Smith   ierr       = MPI_Allgather(&m,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr);
178490ace30eSBarry Smith   rowners[0] = 0;
178590ace30eSBarry Smith   for (i=2; i<=size; i++) {
178690ace30eSBarry Smith     rowners[i] += rowners[i-1];
178790ace30eSBarry Smith   }
178890ace30eSBarry Smith 
1789f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,newmat);CHKERRQ(ierr);
1790f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*newmat,m,PETSC_DECIDE,M,N);CHKERRQ(ierr);
1791be5d1d56SKris Buschelman   ierr = MatSetType(*newmat,type);CHKERRQ(ierr);
1792878740d9SKris Buschelman   ierr = MatMPIDenseSetPreallocation(*newmat,PETSC_NULL);CHKERRQ(ierr);
179390ace30eSBarry Smith   ierr = MatGetArray(*newmat,&array);CHKERRQ(ierr);
179490ace30eSBarry Smith 
179590ace30eSBarry Smith   if (!rank) {
179687828ca2SBarry Smith     ierr = PetscMalloc(m*N*sizeof(PetscScalar),&vals);CHKERRQ(ierr);
179790ace30eSBarry Smith 
179890ace30eSBarry Smith     /* read in my part of the matrix numerical values  */
17990752156aSBarry Smith     ierr = PetscBinaryRead(fd,vals,m*N,PETSC_SCALAR);CHKERRQ(ierr);
180090ace30eSBarry Smith 
180190ace30eSBarry Smith     /* insert into matrix-by row (this is why cannot directly read into array */
180290ace30eSBarry Smith     vals_ptr = vals;
180390ace30eSBarry Smith     for (i=0; i<m; i++) {
180490ace30eSBarry Smith       for (j=0; j<N; j++) {
180590ace30eSBarry Smith         array[i + j*m] = *vals_ptr++;
180690ace30eSBarry Smith       }
180790ace30eSBarry Smith     }
180890ace30eSBarry Smith 
180990ace30eSBarry Smith     /* read in other processors and ship out */
181090ace30eSBarry Smith     for (i=1; i<size; i++) {
181190ace30eSBarry Smith       nz   = (rowners[i+1] - rowners[i])*N;
18120752156aSBarry Smith       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
18137adad957SLisandro Dalcin       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)(*newmat))->tag,comm);CHKERRQ(ierr);
181490ace30eSBarry Smith     }
18153a40ed3dSBarry Smith   } else {
181690ace30eSBarry Smith     /* receive numeric values */
181787828ca2SBarry Smith     ierr = PetscMalloc(m*N*sizeof(PetscScalar),&vals);CHKERRQ(ierr);
181890ace30eSBarry Smith 
181990ace30eSBarry Smith     /* receive message of values*/
18207adad957SLisandro Dalcin     ierr = MPI_Recv(vals,m*N,MPIU_SCALAR,0,((PetscObject)(*newmat))->tag,comm,&status);CHKERRQ(ierr);
182190ace30eSBarry Smith 
182290ace30eSBarry Smith     /* insert into matrix-by row (this is why cannot directly read into array */
182390ace30eSBarry Smith     vals_ptr = vals;
182490ace30eSBarry Smith     for (i=0; i<m; i++) {
182590ace30eSBarry Smith       for (j=0; j<N; j++) {
182690ace30eSBarry Smith         array[i + j*m] = *vals_ptr++;
182790ace30eSBarry Smith       }
182890ace30eSBarry Smith     }
182990ace30eSBarry Smith   }
1830606d414cSSatish Balay   ierr = PetscFree(rowners);CHKERRQ(ierr);
1831606d414cSSatish Balay   ierr = PetscFree(vals);CHKERRQ(ierr);
18326d4a8577SBarry Smith   ierr = MatAssemblyBegin(*newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
18336d4a8577SBarry Smith   ierr = MatAssemblyEnd(*newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
18343a40ed3dSBarry Smith   PetscFunctionReturn(0);
183590ace30eSBarry Smith }
183690ace30eSBarry Smith 
18374a2ae208SSatish Balay #undef __FUNCT__
18384a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIDense"
1839f69a0ea3SMatthew Knepley PetscErrorCode MatLoad_MPIDense(PetscViewer viewer, MatType type,Mat *newmat)
18408965ea79SLois Curfman McInnes {
18418965ea79SLois Curfman McInnes   Mat            A;
184287828ca2SBarry Smith   PetscScalar    *vals,*svals;
184319bcc07fSBarry Smith   MPI_Comm       comm = ((PetscObject)viewer)->comm;
18448965ea79SLois Curfman McInnes   MPI_Status     status;
184513f74950SBarry Smith   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*rowners,*sndcounts,m,maxnz;
184613f74950SBarry Smith   PetscInt       header[4],*rowlengths = 0,M,N,*cols;
184713f74950SBarry Smith   PetscInt       *ourlens,*procsnz = 0,*offlens,jj,*mycols,*smycols;
184813f74950SBarry Smith   PetscInt       i,nz,j,rstart,rend;
184913f74950SBarry Smith   int            fd;
18506849ba73SBarry Smith   PetscErrorCode ierr;
18518965ea79SLois Curfman McInnes 
18523a40ed3dSBarry Smith   PetscFunctionBegin;
1853d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
1854d132466eSBarry Smith   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
18558965ea79SLois Curfman McInnes   if (!rank) {
1856b0a32e0cSBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
18570752156aSBarry Smith     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
1858552e946dSBarry Smith     if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
18598965ea79SLois Curfman McInnes   }
18608965ea79SLois Curfman McInnes 
186113f74950SBarry Smith   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
186290ace30eSBarry Smith   M = header[1]; N = header[2]; nz = header[3];
186390ace30eSBarry Smith 
186490ace30eSBarry Smith   /*
186590ace30eSBarry Smith        Handle case where matrix is stored on disk as a dense matrix
186690ace30eSBarry Smith   */
186790ace30eSBarry Smith   if (nz == MATRIX_BINARY_FORMAT_DENSE) {
1868be5d1d56SKris Buschelman     ierr = MatLoad_MPIDense_DenseInFile(comm,fd,M,N,type,newmat);CHKERRQ(ierr);
18693a40ed3dSBarry Smith     PetscFunctionReturn(0);
187090ace30eSBarry Smith   }
187190ace30eSBarry Smith 
18728965ea79SLois Curfman McInnes   /* determine ownership of all rows */
1873e44c0bd4SBarry Smith   m          = PetscMPIIntCast(M/size + ((M % size) > rank));
1874e44c0bd4SBarry Smith   ierr       = PetscMalloc((size+2)*sizeof(PetscMPIInt),&rowners);CHKERRQ(ierr);
1875ca161407SBarry Smith   ierr       = MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
18768965ea79SLois Curfman McInnes   rowners[0] = 0;
18778965ea79SLois Curfman McInnes   for (i=2; i<=size; i++) {
18788965ea79SLois Curfman McInnes     rowners[i] += rowners[i-1];
18798965ea79SLois Curfman McInnes   }
18808965ea79SLois Curfman McInnes   rstart = rowners[rank];
18818965ea79SLois Curfman McInnes   rend   = rowners[rank+1];
18828965ea79SLois Curfman McInnes 
18838965ea79SLois Curfman McInnes   /* distribute row lengths to all processors */
188413f74950SBarry Smith   ierr    = PetscMalloc(2*(rend-rstart+1)*sizeof(PetscInt),&ourlens);CHKERRQ(ierr);
18858965ea79SLois Curfman McInnes   offlens = ourlens + (rend-rstart);
18868965ea79SLois Curfman McInnes   if (!rank) {
188713f74950SBarry Smith     ierr = PetscMalloc(M*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
18880752156aSBarry Smith     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
188913f74950SBarry Smith     ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr);
18908965ea79SLois Curfman McInnes     for (i=0; i<size; i++) sndcounts[i] = rowners[i+1] - rowners[i];
18911466f1e1SBarry Smith     ierr = MPI_Scatterv(rowlengths,sndcounts,rowners,MPIU_INT,ourlens,rend-rstart,MPIU_INT,0,comm);CHKERRQ(ierr);
1892606d414cSSatish Balay     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
1893ca161407SBarry Smith   } else {
18941466f1e1SBarry Smith     ierr = MPI_Scatterv(0,0,0,MPIU_INT,ourlens,rend-rstart,MPIU_INT,0,comm);CHKERRQ(ierr);
18958965ea79SLois Curfman McInnes   }
18968965ea79SLois Curfman McInnes 
18978965ea79SLois Curfman McInnes   if (!rank) {
18988965ea79SLois Curfman McInnes     /* calculate the number of nonzeros on each processor */
189913f74950SBarry Smith     ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr);
190013f74950SBarry Smith     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
19018965ea79SLois Curfman McInnes     for (i=0; i<size; i++) {
19028965ea79SLois Curfman McInnes       for (j=rowners[i]; j< rowners[i+1]; j++) {
19038965ea79SLois Curfman McInnes         procsnz[i] += rowlengths[j];
19048965ea79SLois Curfman McInnes       }
19058965ea79SLois Curfman McInnes     }
1906606d414cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
19078965ea79SLois Curfman McInnes 
19088965ea79SLois Curfman McInnes     /* determine max buffer needed and allocate it */
19098965ea79SLois Curfman McInnes     maxnz = 0;
19108965ea79SLois Curfman McInnes     for (i=0; i<size; i++) {
19110452661fSBarry Smith       maxnz = PetscMax(maxnz,procsnz[i]);
19128965ea79SLois Curfman McInnes     }
191313f74950SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr);
19148965ea79SLois Curfman McInnes 
19158965ea79SLois Curfman McInnes     /* read in my part of the matrix column indices  */
19168965ea79SLois Curfman McInnes     nz = procsnz[0];
191713f74950SBarry Smith     ierr = PetscMalloc(nz*sizeof(PetscInt),&mycols);CHKERRQ(ierr);
19180752156aSBarry Smith     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
19198965ea79SLois Curfman McInnes 
19208965ea79SLois Curfman McInnes     /* read in every one elses and ship off */
19218965ea79SLois Curfman McInnes     for (i=1; i<size; i++) {
19228965ea79SLois Curfman McInnes       nz   = procsnz[i];
19230752156aSBarry Smith       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
192413f74950SBarry Smith       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
19258965ea79SLois Curfman McInnes     }
1926606d414cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
19273a40ed3dSBarry Smith   } else {
19288965ea79SLois Curfman McInnes     /* determine buffer space needed for message */
19298965ea79SLois Curfman McInnes     nz = 0;
19308965ea79SLois Curfman McInnes     for (i=0; i<m; i++) {
19318965ea79SLois Curfman McInnes       nz += ourlens[i];
19328965ea79SLois Curfman McInnes     }
193313f74950SBarry Smith     ierr = PetscMalloc((nz+1)*sizeof(PetscInt),&mycols);CHKERRQ(ierr);
19348965ea79SLois Curfman McInnes 
19358965ea79SLois Curfman McInnes     /* receive message of column indices*/
193613f74950SBarry Smith     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
193713f74950SBarry Smith     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
193829bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
19398965ea79SLois Curfman McInnes   }
19408965ea79SLois Curfman McInnes 
19418965ea79SLois Curfman McInnes   /* loop over local rows, determining number of off diagonal entries */
194213f74950SBarry Smith   ierr = PetscMemzero(offlens,m*sizeof(PetscInt));CHKERRQ(ierr);
19438965ea79SLois Curfman McInnes   jj = 0;
19448965ea79SLois Curfman McInnes   for (i=0; i<m; i++) {
19458965ea79SLois Curfman McInnes     for (j=0; j<ourlens[i]; j++) {
19468965ea79SLois Curfman McInnes       if (mycols[jj] < rstart || mycols[jj] >= rend) offlens[i]++;
19478965ea79SLois Curfman McInnes       jj++;
19488965ea79SLois Curfman McInnes     }
19498965ea79SLois Curfman McInnes   }
19508965ea79SLois Curfman McInnes 
19518965ea79SLois Curfman McInnes   /* create our matrix */
19528965ea79SLois Curfman McInnes   for (i=0; i<m; i++) {
19538965ea79SLois Curfman McInnes     ourlens[i] -= offlens[i];
19548965ea79SLois Curfman McInnes   }
1955f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,newmat);CHKERRQ(ierr);
1956f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*newmat,m,PETSC_DECIDE,M,N);CHKERRQ(ierr);
1957be5d1d56SKris Buschelman   ierr = MatSetType(*newmat,type);CHKERRQ(ierr);
1958878740d9SKris Buschelman   ierr = MatMPIDenseSetPreallocation(*newmat,PETSC_NULL);CHKERRQ(ierr);
19598965ea79SLois Curfman McInnes   A = *newmat;
19608965ea79SLois Curfman McInnes   for (i=0; i<m; i++) {
19618965ea79SLois Curfman McInnes     ourlens[i] += offlens[i];
19628965ea79SLois Curfman McInnes   }
19638965ea79SLois Curfman McInnes 
19648965ea79SLois Curfman McInnes   if (!rank) {
196587828ca2SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&vals);CHKERRQ(ierr);
19668965ea79SLois Curfman McInnes 
19678965ea79SLois Curfman McInnes     /* read in my part of the matrix numerical values  */
19688965ea79SLois Curfman McInnes     nz = procsnz[0];
19690752156aSBarry Smith     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
19708965ea79SLois Curfman McInnes 
19718965ea79SLois Curfman McInnes     /* insert into matrix */
19728965ea79SLois Curfman McInnes     jj      = rstart;
19738965ea79SLois Curfman McInnes     smycols = mycols;
19748965ea79SLois Curfman McInnes     svals   = vals;
19758965ea79SLois Curfman McInnes     for (i=0; i<m; i++) {
19768965ea79SLois Curfman McInnes       ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr);
19778965ea79SLois Curfman McInnes       smycols += ourlens[i];
19788965ea79SLois Curfman McInnes       svals   += ourlens[i];
19798965ea79SLois Curfman McInnes       jj++;
19808965ea79SLois Curfman McInnes     }
19818965ea79SLois Curfman McInnes 
19828965ea79SLois Curfman McInnes     /* read in other processors and ship out */
19838965ea79SLois Curfman McInnes     for (i=1; i<size; i++) {
19848965ea79SLois Curfman McInnes       nz   = procsnz[i];
19850752156aSBarry Smith       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
19867adad957SLisandro Dalcin       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)A)->tag,comm);CHKERRQ(ierr);
19878965ea79SLois Curfman McInnes     }
1988606d414cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
19893a40ed3dSBarry Smith   } else {
19908965ea79SLois Curfman McInnes     /* receive numeric values */
199184d528b1SBarry Smith     ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&vals);CHKERRQ(ierr);
19928965ea79SLois Curfman McInnes 
19938965ea79SLois Curfman McInnes     /* receive message of values*/
19947adad957SLisandro Dalcin     ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)A)->tag,comm,&status);CHKERRQ(ierr);
1995ca161407SBarry Smith     ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
199629bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
19978965ea79SLois Curfman McInnes 
19988965ea79SLois Curfman McInnes     /* insert into matrix */
19998965ea79SLois Curfman McInnes     jj      = rstart;
20008965ea79SLois Curfman McInnes     smycols = mycols;
20018965ea79SLois Curfman McInnes     svals   = vals;
20028965ea79SLois Curfman McInnes     for (i=0; i<m; i++) {
20038965ea79SLois Curfman McInnes       ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr);
20048965ea79SLois Curfman McInnes       smycols += ourlens[i];
20058965ea79SLois Curfman McInnes       svals   += ourlens[i];
20068965ea79SLois Curfman McInnes       jj++;
20078965ea79SLois Curfman McInnes     }
20088965ea79SLois Curfman McInnes   }
2009606d414cSSatish Balay   ierr = PetscFree(ourlens);CHKERRQ(ierr);
2010606d414cSSatish Balay   ierr = PetscFree(vals);CHKERRQ(ierr);
2011606d414cSSatish Balay   ierr = PetscFree(mycols);CHKERRQ(ierr);
2012606d414cSSatish Balay   ierr = PetscFree(rowners);CHKERRQ(ierr);
20138965ea79SLois Curfman McInnes 
20146d4a8577SBarry Smith   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
20156d4a8577SBarry Smith   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
20163a40ed3dSBarry Smith   PetscFunctionReturn(0);
20178965ea79SLois Curfman McInnes }
201890ace30eSBarry Smith 
20196e4ee0c6SHong Zhang #undef __FUNCT__
20206e4ee0c6SHong Zhang #define __FUNCT__ "MatEqual_MPIDense"
20216e4ee0c6SHong Zhang PetscErrorCode MatEqual_MPIDense(Mat A,Mat B,PetscTruth *flag)
20226e4ee0c6SHong Zhang {
20236e4ee0c6SHong Zhang   Mat_MPIDense   *matB = (Mat_MPIDense*)B->data,*matA = (Mat_MPIDense*)A->data;
20246e4ee0c6SHong Zhang   Mat            a,b;
20256e4ee0c6SHong Zhang   PetscTruth     flg;
20266e4ee0c6SHong Zhang   PetscErrorCode ierr;
202790ace30eSBarry Smith 
20286e4ee0c6SHong Zhang   PetscFunctionBegin;
20296e4ee0c6SHong Zhang   a = matA->A;
20306e4ee0c6SHong Zhang   b = matB->A;
20316e4ee0c6SHong Zhang   ierr = MatEqual(a,b,&flg);CHKERRQ(ierr);
20327adad957SLisandro Dalcin   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr);
20336e4ee0c6SHong Zhang   PetscFunctionReturn(0);
20346e4ee0c6SHong Zhang }
203590ace30eSBarry Smith 
203609d27a7eSBarry Smith #if defined(PETSC_HAVE_PLAPACK)
203709d27a7eSBarry Smith 
203809d27a7eSBarry Smith #undef __FUNCT__
203909d27a7eSBarry Smith #define __FUNCT__ "PetscPLAPACKFinalizePackage"
204009d27a7eSBarry Smith /*@C
204109d27a7eSBarry Smith   PetscPLAPACKFinalizePackage - This function destroys everything in the Petsc interface to PLAPACK.
204209d27a7eSBarry Smith   Level: developer
204309d27a7eSBarry Smith 
204409d27a7eSBarry Smith .keywords: Petsc, destroy, package, PLAPACK
204509d27a7eSBarry Smith .seealso: PetscFinalize()
204609d27a7eSBarry Smith @*/
204709d27a7eSBarry Smith PetscErrorCode PETSC_DLLEXPORT PetscPLAPACKFinalizePackage(void)
204809d27a7eSBarry Smith {
204909d27a7eSBarry Smith   PetscErrorCode ierr;
205009d27a7eSBarry Smith 
205109d27a7eSBarry Smith   PetscFunctionBegin;
205209d27a7eSBarry Smith   ierr = PLA_Finalize();CHKERRQ(ierr);
205309d27a7eSBarry Smith   PetscFunctionReturn(0);
205409d27a7eSBarry Smith }
205509d27a7eSBarry Smith 
205609d27a7eSBarry Smith #undef __FUNCT__
205709d27a7eSBarry Smith #define __FUNCT__ "PetscPLAPACKInitializePackage"
205809d27a7eSBarry Smith /*@C
205909d27a7eSBarry Smith   PetscPLAPACKInitializePackage - This function initializes everything in the Petsc interface to PLAPACK. It is
206009d27a7eSBarry Smith   called from PetscDLLibraryRegister() when using dynamic libraries, and on the call to PetscInitialize()
206109d27a7eSBarry Smith   when using static libraries.
206209d27a7eSBarry Smith 
206309d27a7eSBarry Smith   Input Parameter:
206409d27a7eSBarry Smith   path - The dynamic library path, or PETSC_NULL
206509d27a7eSBarry Smith 
206609d27a7eSBarry Smith   Level: developer
206709d27a7eSBarry Smith 
206809d27a7eSBarry Smith .keywords: Petsc, initialize, package, PLAPACK
206909d27a7eSBarry Smith .seealso: PetscInitializePackage(), PetscInitialize()
207009d27a7eSBarry Smith @*/
207109d27a7eSBarry Smith PetscErrorCode PETSC_DLLEXPORT PetscPLAPACKInitializePackage(const char path[])
207209d27a7eSBarry Smith {
207304fea9ffSBarry Smith   MPI_Comm       comm = PETSC_COMM_WORLD;
2074eae6fb2eSBarry Smith   PetscMPIInt    size;
207509d27a7eSBarry Smith   PetscErrorCode ierr;
207609d27a7eSBarry Smith 
207709d27a7eSBarry Smith   PetscFunctionBegin;
207809d27a7eSBarry Smith   if (!PLA_Initialized(PETSC_NULL)) {
207909d27a7eSBarry Smith 
208009d27a7eSBarry Smith     ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
208104fea9ffSBarry Smith     Plapack_nprows = 1;
208204fea9ffSBarry Smith     Plapack_npcols = size;
208309d27a7eSBarry Smith 
2084aeccfd6fSBarry Smith     ierr = PetscOptionsBegin(comm,PETSC_NULL,"PLAPACK Options","Mat");CHKERRQ(ierr);
2085aeccfd6fSBarry Smith       ierr = PetscOptionsInt("-plapack_nprows","row dimension of 2D processor mesh","None",Plapack_nprows,&Plapack_nprows,PETSC_NULL);CHKERRQ(ierr);
2086aeccfd6fSBarry Smith       ierr = PetscOptionsInt("-plapack_npcols","column dimension of 2D processor mesh","None",Plapack_npcols,&Plapack_npcols,PETSC_NULL);CHKERRQ(ierr);
2087*79b0a62dSBarry Smith #if defined(PETSC_USE_DEBUG)
2088*79b0a62dSBarry Smith       Plapack_ierror = 3;
2089*79b0a62dSBarry Smith #else
2090*79b0a62dSBarry Smith       Plapack_ierror = 0;
2091*79b0a62dSBarry Smith #endif
2092eae6fb2eSBarry Smith       ierr = PetscOptionsInt("-plapack_ckerror","error checking flag","None",Plapack_ierror,&Plapack_ierror,PETSC_NULL);CHKERRQ(ierr);
2093eae6fb2eSBarry Smith       if (Plapack_ierror){
2094eae6fb2eSBarry Smith 	ierr = PLA_Set_error_checking(Plapack_ierror,PETSC_TRUE,PETSC_TRUE,PETSC_FALSE );CHKERRQ(ierr);
2095aeccfd6fSBarry Smith       } else {
2096eae6fb2eSBarry Smith 	ierr = PLA_Set_error_checking(Plapack_ierror,PETSC_FALSE,PETSC_FALSE,PETSC_FALSE );CHKERRQ(ierr);
2097aeccfd6fSBarry Smith       }
2098aeccfd6fSBarry Smith 
2099eae6fb2eSBarry Smith       Plapack_nb_alg = 0;
2100*79b0a62dSBarry Smith       ierr = PetscOptionsInt("-plapack_nb_alg","algorithmic block size","None",Plapack_nb_alg,&Plapack_nb_alg,PETSC_NULL);CHKERRQ(ierr);
2101eae6fb2eSBarry Smith       if (Plapack_nb_alg) {
2102eae6fb2eSBarry Smith         ierr = pla_Environ_set_nb_alg (PLA_OP_ALL_ALG,Plapack_nb_alg);CHKERRQ(ierr);
2103aeccfd6fSBarry Smith       }
2104aeccfd6fSBarry Smith     PetscOptionsEnd();
2105aeccfd6fSBarry Smith 
210604fea9ffSBarry Smith     ierr = PLA_Comm_1D_to_2D(comm,Plapack_nprows,Plapack_npcols,&Plapack_comm_2d);CHKERRQ(ierr);
210704fea9ffSBarry Smith     ierr = PLA_Init(Plapack_comm_2d);CHKERRQ(ierr);
210809d27a7eSBarry Smith     ierr = PetscRegisterFinalize(PetscPLAPACKFinalizePackage);CHKERRQ(ierr);
210909d27a7eSBarry Smith   }
211009d27a7eSBarry Smith   PetscFunctionReturn(0);
211109d27a7eSBarry Smith }
211290ace30eSBarry Smith 
211390ace30eSBarry Smith 
211409d27a7eSBarry Smith #endif
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