xref: /petsc/src/mat/impls/dense/mpi/mpidense.c (revision 7c4f633dc6bb6149cca88d301ead35a99e103cbb)
1be1d678aSKris Buschelman #define PETSCMAT_DLL
2be1d678aSKris Buschelman 
3ed3cc1f0SBarry Smith /*
4ed3cc1f0SBarry Smith    Basic functions for basic parallel dense matrices.
5ed3cc1f0SBarry Smith */
6ed3cc1f0SBarry Smith 
704fea9ffSBarry Smith 
8*7c4f633dSBarry Smith #include "../src/mat/impls/dense/mpi/mpidense.h"    /*I   "petscmat.h"  I*/
9eae6fb2eSBarry Smith #if defined(PETSC_HAVE_PLAPACK)
10eae6fb2eSBarry Smith static PetscMPIInt Plapack_nprows,Plapack_npcols,Plapack_ierror,Plapack_nb_alg;
11eae6fb2eSBarry Smith static MPI_Comm Plapack_comm_2d;
12eae6fb2eSBarry Smith #endif
138965ea79SLois Curfman McInnes 
14ba8c8a56SBarry Smith #undef __FUNCT__
15ab92ecdeSBarry Smith #define __FUNCT__ "MatDenseGetLocalMatrix"
16ab92ecdeSBarry Smith /*@
17ab92ecdeSBarry Smith 
18ab92ecdeSBarry Smith       MatDenseGetLocalMatrix - For a MATMPIDENSE or MATSEQDENSE matrix returns the sequential
19ab92ecdeSBarry Smith               matrix that represents the operator. For sequential matrices it returns itself.
20ab92ecdeSBarry Smith 
21ab92ecdeSBarry Smith     Input Parameter:
22ab92ecdeSBarry Smith .      A - the Seq or MPI dense matrix
23ab92ecdeSBarry Smith 
24ab92ecdeSBarry Smith     Output Parameter:
25ab92ecdeSBarry Smith .      B - the inner matrix
26ab92ecdeSBarry Smith 
278e6c10adSSatish Balay     Level: intermediate
288e6c10adSSatish Balay 
29ab92ecdeSBarry Smith @*/
30ab92ecdeSBarry Smith PetscErrorCode MatDenseGetLocalMatrix(Mat A,Mat *B)
31ab92ecdeSBarry Smith {
32ab92ecdeSBarry Smith   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
33ab92ecdeSBarry Smith   PetscErrorCode ierr;
34ab92ecdeSBarry Smith   PetscTruth     flg;
35ab92ecdeSBarry Smith 
36ab92ecdeSBarry Smith   PetscFunctionBegin;
37ab92ecdeSBarry Smith   ierr = PetscTypeCompare((PetscObject)A,MATMPIDENSE,&flg);CHKERRQ(ierr);
38ab92ecdeSBarry Smith   if (flg) {
39ab92ecdeSBarry Smith     *B = mat->A;
40ab92ecdeSBarry Smith   } else {
41ab92ecdeSBarry Smith     *B = A;
42ab92ecdeSBarry Smith   }
43ab92ecdeSBarry Smith   PetscFunctionReturn(0);
44ab92ecdeSBarry Smith }
45ab92ecdeSBarry Smith 
46ab92ecdeSBarry Smith #undef __FUNCT__
47ba8c8a56SBarry Smith #define __FUNCT__ "MatGetRow_MPIDense"
48ba8c8a56SBarry Smith PetscErrorCode MatGetRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
49ba8c8a56SBarry Smith {
50ba8c8a56SBarry Smith   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
51ba8c8a56SBarry Smith   PetscErrorCode ierr;
52d0f46423SBarry Smith   PetscInt       lrow,rstart = A->rmap->rstart,rend = A->rmap->rend;
53ba8c8a56SBarry Smith 
54ba8c8a56SBarry Smith   PetscFunctionBegin;
55ba8c8a56SBarry Smith   if (row < rstart || row >= rend) SETERRQ(PETSC_ERR_SUP,"only local rows")
56ba8c8a56SBarry Smith   lrow = row - rstart;
57ba8c8a56SBarry Smith   ierr = MatGetRow(mat->A,lrow,nz,(const PetscInt **)idx,(const PetscScalar **)v);CHKERRQ(ierr);
58ba8c8a56SBarry Smith   PetscFunctionReturn(0);
59ba8c8a56SBarry Smith }
60ba8c8a56SBarry Smith 
61ba8c8a56SBarry Smith #undef __FUNCT__
62ba8c8a56SBarry Smith #define __FUNCT__ "MatRestoreRow_MPIDense"
63ba8c8a56SBarry Smith PetscErrorCode MatRestoreRow_MPIDense(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
64ba8c8a56SBarry Smith {
65ba8c8a56SBarry Smith   PetscErrorCode ierr;
66ba8c8a56SBarry Smith 
67ba8c8a56SBarry Smith   PetscFunctionBegin;
68ba8c8a56SBarry Smith   if (idx) {ierr = PetscFree(*idx);CHKERRQ(ierr);}
69ba8c8a56SBarry Smith   if (v) {ierr = PetscFree(*v);CHKERRQ(ierr);}
70ba8c8a56SBarry Smith   PetscFunctionReturn(0);
71ba8c8a56SBarry Smith }
72ba8c8a56SBarry Smith 
730de54da6SSatish Balay EXTERN_C_BEGIN
744a2ae208SSatish Balay #undef __FUNCT__
754a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIDense"
76be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPIDense(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *B)
770de54da6SSatish Balay {
780de54da6SSatish Balay   Mat_MPIDense   *mdn = (Mat_MPIDense*)A->data;
796849ba73SBarry Smith   PetscErrorCode ierr;
80d0f46423SBarry Smith   PetscInt       m = A->rmap->n,rstart = A->rmap->rstart;
8187828ca2SBarry Smith   PetscScalar    *array;
820de54da6SSatish Balay   MPI_Comm       comm;
830de54da6SSatish Balay 
840de54da6SSatish Balay   PetscFunctionBegin;
85d0f46423SBarry Smith   if (A->rmap->N != A->cmap->N) SETERRQ(PETSC_ERR_SUP,"Only square matrices supported.");
860de54da6SSatish Balay 
870de54da6SSatish Balay   /* The reuse aspect is not implemented efficiently */
880de54da6SSatish Balay   if (reuse) { ierr = MatDestroy(*B);CHKERRQ(ierr);}
890de54da6SSatish Balay 
900de54da6SSatish Balay   ierr = PetscObjectGetComm((PetscObject)(mdn->A),&comm);CHKERRQ(ierr);
910de54da6SSatish Balay   ierr = MatGetArray(mdn->A,&array);CHKERRQ(ierr);
92f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,B);CHKERRQ(ierr);
93f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*B,m,m,m,m);CHKERRQ(ierr);
947adad957SLisandro Dalcin   ierr = MatSetType(*B,((PetscObject)mdn->A)->type_name);CHKERRQ(ierr);
955c5985e7SKris Buschelman   ierr = MatSeqDenseSetPreallocation(*B,array+m*rstart);CHKERRQ(ierr);
960de54da6SSatish Balay   ierr = MatRestoreArray(mdn->A,&array);CHKERRQ(ierr);
970de54da6SSatish Balay   ierr = MatAssemblyBegin(*B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
980de54da6SSatish Balay   ierr = MatAssemblyEnd(*B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
990de54da6SSatish Balay 
1000de54da6SSatish Balay   *iscopy = PETSC_TRUE;
1010de54da6SSatish Balay   PetscFunctionReturn(0);
1020de54da6SSatish Balay }
1030de54da6SSatish Balay EXTERN_C_END
1040de54da6SSatish Balay 
1054a2ae208SSatish Balay #undef __FUNCT__
1064a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIDense"
10713f74950SBarry Smith PetscErrorCode MatSetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],const PetscScalar v[],InsertMode addv)
1088965ea79SLois Curfman McInnes {
10939b7565bSBarry Smith   Mat_MPIDense   *A = (Mat_MPIDense*)mat->data;
110dfbe8321SBarry Smith   PetscErrorCode ierr;
111d0f46423SBarry Smith   PetscInt       i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row;
112273d9f13SBarry Smith   PetscTruth     roworiented = A->roworiented;
1138965ea79SLois Curfman McInnes 
1143a40ed3dSBarry Smith   PetscFunctionBegin;
1158965ea79SLois Curfman McInnes   for (i=0; i<m; i++) {
1165ef9f2a5SBarry Smith     if (idxm[i] < 0) continue;
117d0f46423SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large");
1188965ea79SLois Curfman McInnes     if (idxm[i] >= rstart && idxm[i] < rend) {
1198965ea79SLois Curfman McInnes       row = idxm[i] - rstart;
12039b7565bSBarry Smith       if (roworiented) {
12139b7565bSBarry Smith         ierr = MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv);CHKERRQ(ierr);
1223a40ed3dSBarry Smith       } else {
1238965ea79SLois Curfman McInnes         for (j=0; j<n; j++) {
1245ef9f2a5SBarry Smith           if (idxn[j] < 0) continue;
125d0f46423SBarry Smith           if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Column too large");
12639b7565bSBarry Smith           ierr = MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv);CHKERRQ(ierr);
12739b7565bSBarry Smith         }
1288965ea79SLois Curfman McInnes       }
1293a40ed3dSBarry Smith     } else {
1303782ba37SSatish Balay       if (!A->donotstash) {
13139b7565bSBarry Smith         if (roworiented) {
1328798bf22SSatish Balay           ierr = MatStashValuesRow_Private(&mat->stash,idxm[i],n,idxn,v+i*n);CHKERRQ(ierr);
133d36fbae8SSatish Balay         } else {
1348798bf22SSatish Balay           ierr = MatStashValuesCol_Private(&mat->stash,idxm[i],n,idxn,v+i,m);CHKERRQ(ierr);
13539b7565bSBarry Smith         }
136b49de8d1SLois Curfman McInnes       }
137b49de8d1SLois Curfman McInnes     }
1383782ba37SSatish Balay   }
1393a40ed3dSBarry Smith   PetscFunctionReturn(0);
140b49de8d1SLois Curfman McInnes }
141b49de8d1SLois Curfman McInnes 
1424a2ae208SSatish Balay #undef __FUNCT__
1434a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIDense"
14413f74950SBarry Smith PetscErrorCode MatGetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
145b49de8d1SLois Curfman McInnes {
146b49de8d1SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
147dfbe8321SBarry Smith   PetscErrorCode ierr;
148d0f46423SBarry Smith   PetscInt       i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row;
149b49de8d1SLois Curfman McInnes 
1503a40ed3dSBarry Smith   PetscFunctionBegin;
151b49de8d1SLois Curfman McInnes   for (i=0; i<m; i++) {
15297e567efSBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); */
153d0f46423SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large");
154b49de8d1SLois Curfman McInnes     if (idxm[i] >= rstart && idxm[i] < rend) {
155b49de8d1SLois Curfman McInnes       row = idxm[i] - rstart;
156b49de8d1SLois Curfman McInnes       for (j=0; j<n; j++) {
15797e567efSBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); */
158d0f46423SBarry Smith         if (idxn[j] >= mat->cmap->N) {
15929bbc08cSBarry Smith           SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Column too large");
160a8c6a408SBarry Smith         }
161b49de8d1SLois Curfman McInnes         ierr = MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j);CHKERRQ(ierr);
162b49de8d1SLois Curfman McInnes       }
163a8c6a408SBarry Smith     } else {
16429bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Only local values currently supported");
1658965ea79SLois Curfman McInnes     }
1668965ea79SLois Curfman McInnes   }
1673a40ed3dSBarry Smith   PetscFunctionReturn(0);
1688965ea79SLois Curfman McInnes }
1698965ea79SLois Curfman McInnes 
1704a2ae208SSatish Balay #undef __FUNCT__
1714a2ae208SSatish Balay #define __FUNCT__ "MatGetArray_MPIDense"
172dfbe8321SBarry Smith PetscErrorCode MatGetArray_MPIDense(Mat A,PetscScalar *array[])
173ff14e315SSatish Balay {
174ff14e315SSatish Balay   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
175dfbe8321SBarry Smith   PetscErrorCode ierr;
176ff14e315SSatish Balay 
1773a40ed3dSBarry Smith   PetscFunctionBegin;
178ff14e315SSatish Balay   ierr = MatGetArray(a->A,array);CHKERRQ(ierr);
1793a40ed3dSBarry Smith   PetscFunctionReturn(0);
180ff14e315SSatish Balay }
181ff14e315SSatish Balay 
1824a2ae208SSatish Balay #undef __FUNCT__
1834a2ae208SSatish Balay #define __FUNCT__ "MatGetSubMatrix_MPIDense"
18413f74950SBarry Smith static PetscErrorCode MatGetSubMatrix_MPIDense(Mat A,IS isrow,IS iscol,PetscInt cs,MatReuse scall,Mat *B)
185ca3fa75bSLois Curfman McInnes {
186ca3fa75bSLois Curfman McInnes   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data,*newmatd;
187ca3fa75bSLois Curfman McInnes   Mat_SeqDense   *lmat = (Mat_SeqDense*)mat->A->data;
1886849ba73SBarry Smith   PetscErrorCode ierr;
1895d0c19d7SBarry Smith   PetscInt       i,j,rstart,rend,nrows,ncols,nlrows,nlcols;
1905d0c19d7SBarry Smith   const PetscInt *irow,*icol;
19187828ca2SBarry Smith   PetscScalar    *av,*bv,*v = lmat->v;
192ca3fa75bSLois Curfman McInnes   Mat            newmat;
193ca3fa75bSLois Curfman McInnes 
194ca3fa75bSLois Curfman McInnes   PetscFunctionBegin;
195ca3fa75bSLois Curfman McInnes   ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr);
196ca3fa75bSLois Curfman McInnes   ierr = ISGetIndices(iscol,&icol);CHKERRQ(ierr);
197b9b97703SBarry Smith   ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr);
198b9b97703SBarry Smith   ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr);
199ca3fa75bSLois Curfman McInnes 
200ca3fa75bSLois Curfman McInnes   /* No parallel redistribution currently supported! Should really check each index set
2017eba5e9cSLois Curfman McInnes      to comfirm that it is OK.  ... Currently supports only submatrix same partitioning as
2027eba5e9cSLois Curfman McInnes      original matrix! */
203ca3fa75bSLois Curfman McInnes 
204ca3fa75bSLois Curfman McInnes   ierr = MatGetLocalSize(A,&nlrows,&nlcols);CHKERRQ(ierr);
2057eba5e9cSLois Curfman McInnes   ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr);
206ca3fa75bSLois Curfman McInnes 
207ca3fa75bSLois Curfman McInnes   /* Check submatrix call */
208ca3fa75bSLois Curfman McInnes   if (scall == MAT_REUSE_MATRIX) {
20929bbc08cSBarry Smith     /* SETERRQ(PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */
2107eba5e9cSLois Curfman McInnes     /* Really need to test rows and column sizes! */
211ca3fa75bSLois Curfman McInnes     newmat = *B;
212ca3fa75bSLois Curfman McInnes   } else {
213ca3fa75bSLois Curfman McInnes     /* Create and fill new matrix */
2147adad957SLisandro Dalcin     ierr = MatCreate(((PetscObject)A)->comm,&newmat);CHKERRQ(ierr);
215f69a0ea3SMatthew Knepley     ierr = MatSetSizes(newmat,nrows,cs,PETSC_DECIDE,ncols);CHKERRQ(ierr);
2167adad957SLisandro Dalcin     ierr = MatSetType(newmat,((PetscObject)A)->type_name);CHKERRQ(ierr);
217878740d9SKris Buschelman     ierr = MatMPIDenseSetPreallocation(newmat,PETSC_NULL);CHKERRQ(ierr);
218ca3fa75bSLois Curfman McInnes   }
219ca3fa75bSLois Curfman McInnes 
220ca3fa75bSLois Curfman McInnes   /* Now extract the data pointers and do the copy, column at a time */
221ca3fa75bSLois Curfman McInnes   newmatd = (Mat_MPIDense*)newmat->data;
222ca3fa75bSLois Curfman McInnes   bv      = ((Mat_SeqDense *)newmatd->A->data)->v;
223ca3fa75bSLois Curfman McInnes 
224ca3fa75bSLois Curfman McInnes   for (i=0; i<ncols; i++) {
225ca3fa75bSLois Curfman McInnes     av = v + nlrows*icol[i];
226ca3fa75bSLois Curfman McInnes     for (j=0; j<nrows; j++) {
2277eba5e9cSLois Curfman McInnes       *bv++ = av[irow[j] - rstart];
228ca3fa75bSLois Curfman McInnes     }
229ca3fa75bSLois Curfman McInnes   }
230ca3fa75bSLois Curfman McInnes 
231ca3fa75bSLois Curfman McInnes   /* Assemble the matrices so that the correct flags are set */
232ca3fa75bSLois Curfman McInnes   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
233ca3fa75bSLois Curfman McInnes   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
234ca3fa75bSLois Curfman McInnes 
235ca3fa75bSLois Curfman McInnes   /* Free work space */
236ca3fa75bSLois Curfman McInnes   ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr);
237ca3fa75bSLois Curfman McInnes   ierr = ISRestoreIndices(iscol,&icol);CHKERRQ(ierr);
238ca3fa75bSLois Curfman McInnes   *B = newmat;
239ca3fa75bSLois Curfman McInnes   PetscFunctionReturn(0);
240ca3fa75bSLois Curfman McInnes }
241ca3fa75bSLois Curfman McInnes 
2424a2ae208SSatish Balay #undef __FUNCT__
2434a2ae208SSatish Balay #define __FUNCT__ "MatRestoreArray_MPIDense"
244dfbe8321SBarry Smith PetscErrorCode MatRestoreArray_MPIDense(Mat A,PetscScalar *array[])
245ff14e315SSatish Balay {
2463a40ed3dSBarry Smith   PetscFunctionBegin;
2473a40ed3dSBarry Smith   PetscFunctionReturn(0);
248ff14e315SSatish Balay }
249ff14e315SSatish Balay 
2504a2ae208SSatish Balay #undef __FUNCT__
2514a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIDense"
252dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode)
2538965ea79SLois Curfman McInnes {
25439ddd567SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
2557adad957SLisandro Dalcin   MPI_Comm       comm = ((PetscObject)mat)->comm;
256dfbe8321SBarry Smith   PetscErrorCode ierr;
25713f74950SBarry Smith   PetscInt       nstash,reallocs;
2588965ea79SLois Curfman McInnes   InsertMode     addv;
2598965ea79SLois Curfman McInnes 
2603a40ed3dSBarry Smith   PetscFunctionBegin;
2618965ea79SLois Curfman McInnes   /* make sure all processors are either in INSERTMODE or ADDMODE */
262ca161407SBarry Smith   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,comm);CHKERRQ(ierr);
2637056b6fcSBarry Smith   if (addv == (ADD_VALUES|INSERT_VALUES)) {
26429bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Cannot mix adds/inserts on different procs");
2658965ea79SLois Curfman McInnes   }
266e0fa3b82SLois Curfman McInnes   mat->insertmode = addv; /* in case this processor had no cache */
2678965ea79SLois Curfman McInnes 
268d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
2698798bf22SSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
270ae15b995SBarry Smith   ierr = PetscInfo2(mdn->A,"Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
2713a40ed3dSBarry Smith   PetscFunctionReturn(0);
2728965ea79SLois Curfman McInnes }
2738965ea79SLois Curfman McInnes 
2744a2ae208SSatish Balay #undef __FUNCT__
2754a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIDense"
276dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode)
2778965ea79SLois Curfman McInnes {
27839ddd567SLois Curfman McInnes   Mat_MPIDense    *mdn=(Mat_MPIDense*)mat->data;
2796849ba73SBarry Smith   PetscErrorCode  ierr;
28013f74950SBarry Smith   PetscInt        i,*row,*col,flg,j,rstart,ncols;
28113f74950SBarry Smith   PetscMPIInt     n;
28287828ca2SBarry Smith   PetscScalar     *val;
283e0fa3b82SLois Curfman McInnes   InsertMode      addv=mat->insertmode;
2848965ea79SLois Curfman McInnes 
2853a40ed3dSBarry Smith   PetscFunctionBegin;
2868965ea79SLois Curfman McInnes   /*  wait on receives */
2877ef1d9bdSSatish Balay   while (1) {
2888798bf22SSatish Balay     ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
2897ef1d9bdSSatish Balay     if (!flg) break;
2908965ea79SLois Curfman McInnes 
2917ef1d9bdSSatish Balay     for (i=0; i<n;) {
2927ef1d9bdSSatish Balay       /* Now identify the consecutive vals belonging to the same row */
2937ef1d9bdSSatish Balay       for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
2947ef1d9bdSSatish Balay       if (j < n) ncols = j-i;
2957ef1d9bdSSatish Balay       else       ncols = n-i;
2967ef1d9bdSSatish Balay       /* Now assemble all these values with a single function call */
2977ef1d9bdSSatish Balay       ierr = MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
2987ef1d9bdSSatish Balay       i = j;
2998965ea79SLois Curfman McInnes     }
3007ef1d9bdSSatish Balay   }
3018798bf22SSatish Balay   ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
3028965ea79SLois Curfman McInnes 
30339ddd567SLois Curfman McInnes   ierr = MatAssemblyBegin(mdn->A,mode);CHKERRQ(ierr);
30439ddd567SLois Curfman McInnes   ierr = MatAssemblyEnd(mdn->A,mode);CHKERRQ(ierr);
3058965ea79SLois Curfman McInnes 
3066d4a8577SBarry Smith   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
30739ddd567SLois Curfman McInnes     ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr);
3088965ea79SLois Curfman McInnes   }
3093a40ed3dSBarry Smith   PetscFunctionReturn(0);
3108965ea79SLois Curfman McInnes }
3118965ea79SLois Curfman McInnes 
3124a2ae208SSatish Balay #undef __FUNCT__
3134a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIDense"
314dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIDense(Mat A)
3158965ea79SLois Curfman McInnes {
316dfbe8321SBarry Smith   PetscErrorCode ierr;
31739ddd567SLois Curfman McInnes   Mat_MPIDense   *l = (Mat_MPIDense*)A->data;
3183a40ed3dSBarry Smith 
3193a40ed3dSBarry Smith   PetscFunctionBegin;
3203a40ed3dSBarry Smith   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
3213a40ed3dSBarry Smith   PetscFunctionReturn(0);
3228965ea79SLois Curfman McInnes }
3238965ea79SLois Curfman McInnes 
3248965ea79SLois Curfman McInnes /* the code does not do the diagonal entries correctly unless the
3258965ea79SLois Curfman McInnes    matrix is square and the column and row owerships are identical.
3268965ea79SLois Curfman McInnes    This is a BUG. The only way to fix it seems to be to access
3273501a2bdSLois Curfman McInnes    mdn->A and mdn->B directly and not through the MatZeroRows()
3288965ea79SLois Curfman McInnes    routine.
3298965ea79SLois Curfman McInnes */
3304a2ae208SSatish Balay #undef __FUNCT__
3314a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIDense"
332f4df32b1SMatthew Knepley PetscErrorCode MatZeroRows_MPIDense(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag)
3338965ea79SLois Curfman McInnes {
33439ddd567SLois Curfman McInnes   Mat_MPIDense   *l = (Mat_MPIDense*)A->data;
3356849ba73SBarry Smith   PetscErrorCode ierr;
336d0f46423SBarry Smith   PetscInt       i,*owners = A->rmap->range;
33713f74950SBarry Smith   PetscInt       *nprocs,j,idx,nsends;
33813f74950SBarry Smith   PetscInt       nmax,*svalues,*starts,*owner,nrecvs;
3397adad957SLisandro Dalcin   PetscInt       *rvalues,tag = ((PetscObject)A)->tag,count,base,slen,*source;
34013f74950SBarry Smith   PetscInt       *lens,*lrows,*values;
34113f74950SBarry Smith   PetscMPIInt    n,imdex,rank = l->rank,size = l->size;
3427adad957SLisandro Dalcin   MPI_Comm       comm = ((PetscObject)A)->comm;
3438965ea79SLois Curfman McInnes   MPI_Request    *send_waits,*recv_waits;
3448965ea79SLois Curfman McInnes   MPI_Status     recv_status,*send_status;
34535d8aa7fSBarry Smith   PetscTruth     found;
3468965ea79SLois Curfman McInnes 
3473a40ed3dSBarry Smith   PetscFunctionBegin;
3488965ea79SLois Curfman McInnes   /*  first count number of contributors to each processor */
34913f74950SBarry Smith   ierr  = PetscMalloc(2*size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr);
35013f74950SBarry Smith   ierr  = PetscMemzero(nprocs,2*size*sizeof(PetscInt));CHKERRQ(ierr);
35113f74950SBarry Smith   ierr  = PetscMalloc((N+1)*sizeof(PetscInt),&owner);CHKERRQ(ierr); /* see note*/
3528965ea79SLois Curfman McInnes   for (i=0; i<N; i++) {
3538965ea79SLois Curfman McInnes     idx = rows[i];
35435d8aa7fSBarry Smith     found = PETSC_FALSE;
3558965ea79SLois Curfman McInnes     for (j=0; j<size; j++) {
3568965ea79SLois Curfman McInnes       if (idx >= owners[j] && idx < owners[j+1]) {
357c1dc657dSBarry Smith         nprocs[2*j]++; nprocs[2*j+1] = 1; owner[i] = j; found = PETSC_TRUE; break;
3588965ea79SLois Curfman McInnes       }
3598965ea79SLois Curfman McInnes     }
36029bbc08cSBarry Smith     if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range");
3618965ea79SLois Curfman McInnes   }
362c1dc657dSBarry Smith   nsends = 0;  for (i=0; i<size; i++) { nsends += nprocs[2*i+1];}
3638965ea79SLois Curfman McInnes 
3648965ea79SLois Curfman McInnes   /* inform other processors of number of messages and max length*/
365c1dc657dSBarry Smith   ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr);
3668965ea79SLois Curfman McInnes 
3678965ea79SLois Curfman McInnes   /* post receives:   */
36813f74950SBarry Smith   ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(PetscInt),&rvalues);CHKERRQ(ierr);
369b0a32e0cSBarry Smith   ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr);
3708965ea79SLois Curfman McInnes   for (i=0; i<nrecvs; i++) {
37113f74950SBarry Smith     ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr);
3728965ea79SLois Curfman McInnes   }
3738965ea79SLois Curfman McInnes 
3748965ea79SLois Curfman McInnes   /* do sends:
3758965ea79SLois Curfman McInnes       1) starts[i] gives the starting index in svalues for stuff going to
3768965ea79SLois Curfman McInnes          the ith processor
3778965ea79SLois Curfman McInnes   */
37813f74950SBarry Smith   ierr = PetscMalloc((N+1)*sizeof(PetscInt),&svalues);CHKERRQ(ierr);
379b0a32e0cSBarry Smith   ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr);
38013f74950SBarry Smith   ierr = PetscMalloc((size+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr);
3818965ea79SLois Curfman McInnes   starts[0]  = 0;
382c1dc657dSBarry Smith   for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];}
3838965ea79SLois Curfman McInnes   for (i=0; i<N; i++) {
3848965ea79SLois Curfman McInnes     svalues[starts[owner[i]]++] = rows[i];
3858965ea79SLois Curfman McInnes   }
3868965ea79SLois Curfman McInnes 
3878965ea79SLois Curfman McInnes   starts[0] = 0;
388c1dc657dSBarry Smith   for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];}
3898965ea79SLois Curfman McInnes   count = 0;
3908965ea79SLois Curfman McInnes   for (i=0; i<size; i++) {
391c1dc657dSBarry Smith     if (nprocs[2*i+1]) {
39213f74950SBarry Smith       ierr = MPI_Isend(svalues+starts[i],nprocs[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr);
3938965ea79SLois Curfman McInnes     }
3948965ea79SLois Curfman McInnes   }
395606d414cSSatish Balay   ierr = PetscFree(starts);CHKERRQ(ierr);
3968965ea79SLois Curfman McInnes 
3978965ea79SLois Curfman McInnes   base = owners[rank];
3988965ea79SLois Curfman McInnes 
3998965ea79SLois Curfman McInnes   /*  wait on receives */
40013f74950SBarry Smith   ierr   = PetscMalloc(2*(nrecvs+1)*sizeof(PetscInt),&lens);CHKERRQ(ierr);
4018965ea79SLois Curfman McInnes   source = lens + nrecvs;
4028965ea79SLois Curfman McInnes   count  = nrecvs; slen = 0;
4038965ea79SLois Curfman McInnes   while (count) {
404ca161407SBarry Smith     ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr);
4058965ea79SLois Curfman McInnes     /* unpack receives into our local space */
40613f74950SBarry Smith     ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr);
4078965ea79SLois Curfman McInnes     source[imdex]  = recv_status.MPI_SOURCE;
4088965ea79SLois Curfman McInnes     lens[imdex]    = n;
4098965ea79SLois Curfman McInnes     slen += n;
4108965ea79SLois Curfman McInnes     count--;
4118965ea79SLois Curfman McInnes   }
412606d414cSSatish Balay   ierr = PetscFree(recv_waits);CHKERRQ(ierr);
4138965ea79SLois Curfman McInnes 
4148965ea79SLois Curfman McInnes   /* move the data into the send scatter */
41513f74950SBarry Smith   ierr = PetscMalloc((slen+1)*sizeof(PetscInt),&lrows);CHKERRQ(ierr);
4168965ea79SLois Curfman McInnes   count = 0;
4178965ea79SLois Curfman McInnes   for (i=0; i<nrecvs; i++) {
4188965ea79SLois Curfman McInnes     values = rvalues + i*nmax;
4198965ea79SLois Curfman McInnes     for (j=0; j<lens[i]; j++) {
4208965ea79SLois Curfman McInnes       lrows[count++] = values[j] - base;
4218965ea79SLois Curfman McInnes     }
4228965ea79SLois Curfman McInnes   }
423606d414cSSatish Balay   ierr = PetscFree(rvalues);CHKERRQ(ierr);
424606d414cSSatish Balay   ierr = PetscFree(lens);CHKERRQ(ierr);
425606d414cSSatish Balay   ierr = PetscFree(owner);CHKERRQ(ierr);
426606d414cSSatish Balay   ierr = PetscFree(nprocs);CHKERRQ(ierr);
4278965ea79SLois Curfman McInnes 
4288965ea79SLois Curfman McInnes   /* actually zap the local rows */
429f4df32b1SMatthew Knepley   ierr = MatZeroRows(l->A,slen,lrows,diag);CHKERRQ(ierr);
430606d414cSSatish Balay   ierr = PetscFree(lrows);CHKERRQ(ierr);
4318965ea79SLois Curfman McInnes 
4328965ea79SLois Curfman McInnes   /* wait on sends */
4338965ea79SLois Curfman McInnes   if (nsends) {
434b0a32e0cSBarry Smith     ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr);
435ca161407SBarry Smith     ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr);
436606d414cSSatish Balay     ierr = PetscFree(send_status);CHKERRQ(ierr);
4378965ea79SLois Curfman McInnes   }
438606d414cSSatish Balay   ierr = PetscFree(send_waits);CHKERRQ(ierr);
439606d414cSSatish Balay   ierr = PetscFree(svalues);CHKERRQ(ierr);
4408965ea79SLois Curfman McInnes 
4413a40ed3dSBarry Smith   PetscFunctionReturn(0);
4428965ea79SLois Curfman McInnes }
4438965ea79SLois Curfman McInnes 
4444a2ae208SSatish Balay #undef __FUNCT__
4454a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIDense"
446dfbe8321SBarry Smith PetscErrorCode MatMult_MPIDense(Mat mat,Vec xx,Vec yy)
4478965ea79SLois Curfman McInnes {
44839ddd567SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
449dfbe8321SBarry Smith   PetscErrorCode ierr;
450c456f294SBarry Smith 
4513a40ed3dSBarry Smith   PetscFunctionBegin;
452ca9f406cSSatish Balay   ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
453ca9f406cSSatish Balay   ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
45444cd7ae7SLois Curfman McInnes   ierr = MatMult_SeqDense(mdn->A,mdn->lvec,yy);CHKERRQ(ierr);
4553a40ed3dSBarry Smith   PetscFunctionReturn(0);
4568965ea79SLois Curfman McInnes }
4578965ea79SLois Curfman McInnes 
4584a2ae208SSatish Balay #undef __FUNCT__
4594a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIDense"
460dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz)
4618965ea79SLois Curfman McInnes {
46239ddd567SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
463dfbe8321SBarry Smith   PetscErrorCode ierr;
464c456f294SBarry Smith 
4653a40ed3dSBarry Smith   PetscFunctionBegin;
466ca9f406cSSatish Balay   ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
467ca9f406cSSatish Balay   ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
46844cd7ae7SLois Curfman McInnes   ierr = MatMultAdd_SeqDense(mdn->A,mdn->lvec,yy,zz);CHKERRQ(ierr);
4693a40ed3dSBarry Smith   PetscFunctionReturn(0);
4708965ea79SLois Curfman McInnes }
4718965ea79SLois Curfman McInnes 
4724a2ae208SSatish Balay #undef __FUNCT__
4734a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIDense"
474dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIDense(Mat A,Vec xx,Vec yy)
475096963f5SLois Curfman McInnes {
476096963f5SLois Curfman McInnes   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
477dfbe8321SBarry Smith   PetscErrorCode ierr;
47887828ca2SBarry Smith   PetscScalar    zero = 0.0;
479096963f5SLois Curfman McInnes 
4803a40ed3dSBarry Smith   PetscFunctionBegin;
4812dcb1b2aSMatthew Knepley   ierr = VecSet(yy,zero);CHKERRQ(ierr);
4827c922b88SBarry Smith   ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr);
483ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
484ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
4853a40ed3dSBarry Smith   PetscFunctionReturn(0);
486096963f5SLois Curfman McInnes }
487096963f5SLois Curfman McInnes 
4884a2ae208SSatish Balay #undef __FUNCT__
4894a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIDense"
490dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz)
491096963f5SLois Curfman McInnes {
492096963f5SLois Curfman McInnes   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
493dfbe8321SBarry Smith   PetscErrorCode ierr;
494096963f5SLois Curfman McInnes 
4953a40ed3dSBarry Smith   PetscFunctionBegin;
4963501a2bdSLois Curfman McInnes   ierr = VecCopy(yy,zz);CHKERRQ(ierr);
4977c922b88SBarry Smith   ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr);
498ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
499ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
5003a40ed3dSBarry Smith   PetscFunctionReturn(0);
501096963f5SLois Curfman McInnes }
502096963f5SLois Curfman McInnes 
5034a2ae208SSatish Balay #undef __FUNCT__
5044a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIDense"
505dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIDense(Mat A,Vec v)
5068965ea79SLois Curfman McInnes {
50739ddd567SLois Curfman McInnes   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
508096963f5SLois Curfman McInnes   Mat_SeqDense   *aloc = (Mat_SeqDense*)a->A->data;
509dfbe8321SBarry Smith   PetscErrorCode ierr;
510d0f46423SBarry Smith   PetscInt       len,i,n,m = A->rmap->n,radd;
51187828ca2SBarry Smith   PetscScalar    *x,zero = 0.0;
512ed3cc1f0SBarry Smith 
5133a40ed3dSBarry Smith   PetscFunctionBegin;
5142dcb1b2aSMatthew Knepley   ierr = VecSet(v,zero);CHKERRQ(ierr);
5151ebc52fbSHong Zhang   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
516096963f5SLois Curfman McInnes   ierr = VecGetSize(v,&n);CHKERRQ(ierr);
517d0f46423SBarry Smith   if (n != A->rmap->N) SETERRQ(PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec");
518d0f46423SBarry Smith   len  = PetscMin(a->A->rmap->n,a->A->cmap->n);
519d0f46423SBarry Smith   radd = A->rmap->rstart*m;
52044cd7ae7SLois Curfman McInnes   for (i=0; i<len; i++) {
521096963f5SLois Curfman McInnes     x[i] = aloc->v[radd + i*m + i];
522096963f5SLois Curfman McInnes   }
5231ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
5243a40ed3dSBarry Smith   PetscFunctionReturn(0);
5258965ea79SLois Curfman McInnes }
5268965ea79SLois Curfman McInnes 
5274a2ae208SSatish Balay #undef __FUNCT__
5284a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIDense"
529dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIDense(Mat mat)
5308965ea79SLois Curfman McInnes {
5313501a2bdSLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
532dfbe8321SBarry Smith   PetscErrorCode ierr;
53301b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK)
53401b82886SBarry Smith   Mat_Plapack   *lu=(Mat_Plapack*)(mat->spptr);
53501b82886SBarry Smith #endif
536ed3cc1f0SBarry Smith 
5373a40ed3dSBarry Smith   PetscFunctionBegin;
53894d884c6SBarry Smith 
539aa482453SBarry Smith #if defined(PETSC_USE_LOG)
540d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D, Cols=%D",mat->rmap->N,mat->cmap->N);
5418965ea79SLois Curfman McInnes #endif
5428798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
5433501a2bdSLois Curfman McInnes   ierr = MatDestroy(mdn->A);CHKERRQ(ierr);
54405b42c5fSBarry Smith   if (mdn->lvec)   {ierr = VecDestroy(mdn->lvec);CHKERRQ(ierr);}
54505b42c5fSBarry Smith   if (mdn->Mvctx)  {ierr = VecScatterDestroy(mdn->Mvctx);CHKERRQ(ierr);}
54601b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK)
5472fbe02b9SBarry Smith   if (lu) {
54862b4c0b3SBarry Smith     ierr = PLA_Obj_free(&lu->A);CHKERRQ(ierr);
54962b4c0b3SBarry Smith     ierr = PLA_Obj_free (&lu->pivots);CHKERRQ(ierr);
55062b4c0b3SBarry Smith     ierr = PLA_Temp_free(&lu->templ);CHKERRQ(ierr);
55109d27a7eSBarry Smith 
5522fbe02b9SBarry Smith     if (lu->is_pla) {
55301b82886SBarry Smith       ierr = ISDestroy(lu->is_pla);CHKERRQ(ierr);
55401b82886SBarry Smith       ierr = ISDestroy(lu->is_petsc);CHKERRQ(ierr);
55501b82886SBarry Smith       ierr = VecScatterDestroy(lu->ctx);CHKERRQ(ierr);
556622d7880SLois Curfman McInnes     }
5572fbe02b9SBarry Smith   }
55801b82886SBarry Smith #endif
55901b82886SBarry Smith 
560606d414cSSatish Balay   ierr = PetscFree(mdn);CHKERRQ(ierr);
561dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
562901853e0SKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr);
563901853e0SKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMPIDenseSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
5644ae313f4SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMult_mpiaij_mpidense_C","",PETSC_NULL);CHKERRQ(ierr);
5654ae313f4SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C","",PETSC_NULL);CHKERRQ(ierr);
5664ae313f4SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C","",PETSC_NULL);CHKERRQ(ierr);
5673a40ed3dSBarry Smith   PetscFunctionReturn(0);
5688965ea79SLois Curfman McInnes }
56939ddd567SLois Curfman McInnes 
5704a2ae208SSatish Balay #undef __FUNCT__
5714a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense_Binary"
5726849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_Binary(Mat mat,PetscViewer viewer)
5738965ea79SLois Curfman McInnes {
57439ddd567SLois Curfman McInnes   Mat_MPIDense      *mdn = (Mat_MPIDense*)mat->data;
575dfbe8321SBarry Smith   PetscErrorCode    ierr;
576aa05aa95SBarry Smith   PetscViewerFormat format;
577aa05aa95SBarry Smith   int               fd;
578d0f46423SBarry Smith   PetscInt          header[4],mmax,N = mat->cmap->N,i,j,m,k;
579aa05aa95SBarry Smith   PetscMPIInt       rank,tag  = ((PetscObject)viewer)->tag,size;
580578230a0SSatish Balay   PetscScalar       *work,*v,*vv;
581aa05aa95SBarry Smith   Mat_SeqDense      *a = (Mat_SeqDense*)mdn->A->data;
582aa05aa95SBarry Smith   MPI_Status        status;
5837056b6fcSBarry Smith 
5843a40ed3dSBarry Smith   PetscFunctionBegin;
58539ddd567SLois Curfman McInnes   if (mdn->size == 1) {
58639ddd567SLois Curfman McInnes     ierr = MatView(mdn->A,viewer);CHKERRQ(ierr);
587aa05aa95SBarry Smith   } else {
588aa05aa95SBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
5897adad957SLisandro Dalcin     ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr);
5907adad957SLisandro Dalcin     ierr = MPI_Comm_size(((PetscObject)mat)->comm,&size);CHKERRQ(ierr);
591aa05aa95SBarry Smith 
592aa05aa95SBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
5937973ad04SBarry Smith     if (format == PETSC_VIEWER_NATIVE) {
594aa05aa95SBarry Smith 
595aa05aa95SBarry Smith       if (!rank) {
596aa05aa95SBarry Smith         /* store the matrix as a dense matrix */
597aa05aa95SBarry Smith         header[0] = MAT_FILE_COOKIE;
598d0f46423SBarry Smith         header[1] = mat->rmap->N;
599aa05aa95SBarry Smith         header[2] = N;
600aa05aa95SBarry Smith         header[3] = MATRIX_BINARY_FORMAT_DENSE;
601aa05aa95SBarry Smith         ierr = PetscBinaryWrite(fd,header,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
602aa05aa95SBarry Smith 
603aa05aa95SBarry Smith         /* get largest work array needed for transposing array */
604d0f46423SBarry Smith         mmax = mat->rmap->n;
605aa05aa95SBarry Smith         for (i=1; i<size; i++) {
606d0f46423SBarry Smith           mmax = PetscMax(mmax,mat->rmap->range[i+1] - mat->rmap->range[i]);
6078965ea79SLois Curfman McInnes         }
608aa05aa95SBarry Smith         ierr = PetscMalloc(mmax*N*sizeof(PetscScalar),&work);CHKERRQ(ierr);
609aa05aa95SBarry Smith 
610aa05aa95SBarry Smith         /* write out local array, by rows */
611d0f46423SBarry Smith         m    = mat->rmap->n;
612aa05aa95SBarry Smith         v    = a->v;
613aa05aa95SBarry Smith         for (j=0; j<N; j++) {
614aa05aa95SBarry Smith           for (i=0; i<m; i++) {
615578230a0SSatish Balay             work[j + i*N] = *v++;
616aa05aa95SBarry Smith           }
617aa05aa95SBarry Smith         }
618aa05aa95SBarry Smith         ierr = PetscBinaryWrite(fd,work,m*N,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr);
619aa05aa95SBarry Smith         /* get largest work array to receive messages from other processes, excludes process zero */
620aa05aa95SBarry Smith         mmax = 0;
621aa05aa95SBarry Smith         for (i=1; i<size; i++) {
622d0f46423SBarry Smith           mmax = PetscMax(mmax,mat->rmap->range[i+1] - mat->rmap->range[i]);
623aa05aa95SBarry Smith         }
624578230a0SSatish Balay         ierr = PetscMalloc(mmax*N*sizeof(PetscScalar),&vv);CHKERRQ(ierr);
625aa05aa95SBarry Smith         for(k = 1; k < size; k++) {
626f8009846SMatthew Knepley           v    = vv;
627d0f46423SBarry Smith           m    = mat->rmap->range[k+1] - mat->rmap->range[k];
6287adad957SLisandro Dalcin           ierr = MPI_Recv(v,m*N,MPIU_SCALAR,k,tag,((PetscObject)mat)->comm,&status);CHKERRQ(ierr);
629aa05aa95SBarry Smith 
630aa05aa95SBarry Smith           for(j = 0; j < N; j++) {
631aa05aa95SBarry Smith             for(i = 0; i < m; i++) {
632578230a0SSatish Balay               work[j + i*N] = *v++;
633aa05aa95SBarry Smith             }
634aa05aa95SBarry Smith           }
635aa05aa95SBarry Smith           ierr = PetscBinaryWrite(fd,work,m*N,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr);
636aa05aa95SBarry Smith         }
637aa05aa95SBarry Smith         ierr = PetscFree(work);CHKERRQ(ierr);
638578230a0SSatish Balay         ierr = PetscFree(vv);CHKERRQ(ierr);
639aa05aa95SBarry Smith       } else {
640d0f46423SBarry Smith         ierr = MPI_Send(a->v,mat->rmap->n*mat->cmap->N,MPIU_SCALAR,0,tag,((PetscObject)mat)->comm);CHKERRQ(ierr);
641aa05aa95SBarry Smith       }
6424aa34b0aSBarry Smith     } else {
6437973ad04SBarry Smith       SETERRQ(PETSC_ERR_SUP,"To store a parallel dense matrix you must first call PetscViewerSetFormat(viewer,PETSC_VIEWER_NATIVE");
644aa05aa95SBarry Smith     }
645aa05aa95SBarry Smith   }
6463a40ed3dSBarry Smith   PetscFunctionReturn(0);
6478965ea79SLois Curfman McInnes }
6488965ea79SLois Curfman McInnes 
6494a2ae208SSatish Balay #undef __FUNCT__
6504a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense_ASCIIorDraworSocket"
6516849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
6528965ea79SLois Curfman McInnes {
65339ddd567SLois Curfman McInnes   Mat_MPIDense          *mdn = (Mat_MPIDense*)mat->data;
654dfbe8321SBarry Smith   PetscErrorCode        ierr;
65532dcc486SBarry Smith   PetscMPIInt           size = mdn->size,rank = mdn->rank;
656a313700dSBarry Smith   const PetscViewerType vtype;
65732077d6dSBarry Smith   PetscTruth            iascii,isdraw;
658b0a32e0cSBarry Smith   PetscViewer           sviewer;
659f3ef73ceSBarry Smith   PetscViewerFormat     format;
66001b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK)
66101b82886SBarry Smith   Mat_Plapack           *lu=(Mat_Plapack*)(mat->spptr);
66201b82886SBarry Smith #endif
6638965ea79SLois Curfman McInnes 
6643a40ed3dSBarry Smith   PetscFunctionBegin;
66532077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
666fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
66732077d6dSBarry Smith   if (iascii) {
668b0a32e0cSBarry Smith     ierr = PetscViewerGetType(viewer,&vtype);CHKERRQ(ierr);
669b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
670456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
6714e220ebcSLois Curfman McInnes       MatInfo info;
672888f2ed8SSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
673d0f46423SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"  [%d] local rows %D nz %D nz alloced %D mem %D \n",rank,mat->rmap->n,
67477431f27SBarry Smith                    (PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory);CHKERRQ(ierr);
675b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
6763501a2bdSLois Curfman McInnes       ierr = VecScatterView(mdn->Mvctx,viewer);CHKERRQ(ierr);
67701b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK)
67801b82886SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"PLAPACK run parameters:\n");CHKERRQ(ierr);
6796c995c7dSHong Zhang       ierr = PetscViewerASCIIPrintf(viewer,"  Processor mesh: nprows %d, npcols %d\n",lu->Plapack_nprows, lu->Plapack_npcols);CHKERRQ(ierr);
68001b82886SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  Distr. block size nb: %d \n",lu->nb);CHKERRQ(ierr);
6816c995c7dSHong Zhang       ierr = PetscViewerASCIIPrintf(viewer,"  Error checking: %d\n",lu->Plapack_ierror);CHKERRQ(ierr);
6826c995c7dSHong Zhang       ierr = PetscViewerASCIIPrintf(viewer,"  Algorithmic block size: %d\n",lu->Plapack_nb_alg);CHKERRQ(ierr);
68301b82886SBarry Smith #endif
6843a40ed3dSBarry Smith       PetscFunctionReturn(0);
685fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
6863a40ed3dSBarry Smith       PetscFunctionReturn(0);
6878965ea79SLois Curfman McInnes     }
688f1af5d2fSBarry Smith   } else if (isdraw) {
689b0a32e0cSBarry Smith     PetscDraw  draw;
690f1af5d2fSBarry Smith     PetscTruth isnull;
691f1af5d2fSBarry Smith 
692b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
693b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr);
694f1af5d2fSBarry Smith     if (isnull) PetscFunctionReturn(0);
695f1af5d2fSBarry Smith   }
69677ed5343SBarry Smith 
6978965ea79SLois Curfman McInnes   if (size == 1) {
69839ddd567SLois Curfman McInnes     ierr = MatView(mdn->A,viewer);CHKERRQ(ierr);
6993a40ed3dSBarry Smith   } else {
7008965ea79SLois Curfman McInnes     /* assemble the entire matrix onto first processor. */
7018965ea79SLois Curfman McInnes     Mat         A;
702d0f46423SBarry Smith     PetscInt    M = mat->rmap->N,N = mat->cmap->N,m,row,i,nz;
703ba8c8a56SBarry Smith     PetscInt    *cols;
704ba8c8a56SBarry Smith     PetscScalar *vals;
7058965ea79SLois Curfman McInnes 
7067adad957SLisandro Dalcin     ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr);
7078965ea79SLois Curfman McInnes     if (!rank) {
708f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
7093a40ed3dSBarry Smith     } else {
710f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
7118965ea79SLois Curfman McInnes     }
7127adad957SLisandro Dalcin     /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */
713878740d9SKris Buschelman     ierr = MatSetType(A,MATMPIDENSE);CHKERRQ(ierr);
714878740d9SKris Buschelman     ierr = MatMPIDenseSetPreallocation(A,PETSC_NULL);
71552e6d16bSBarry Smith     ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr);
7168965ea79SLois Curfman McInnes 
71739ddd567SLois Curfman McInnes     /* Copy the matrix ... This isn't the most efficient means,
71839ddd567SLois Curfman McInnes        but it's quick for now */
71951022da4SBarry Smith     A->insertmode = INSERT_VALUES;
720d0f46423SBarry Smith     row = mat->rmap->rstart; m = mdn->A->rmap->n;
7218965ea79SLois Curfman McInnes     for (i=0; i<m; i++) {
722ba8c8a56SBarry Smith       ierr = MatGetRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr);
723ba8c8a56SBarry Smith       ierr = MatSetValues_MPIDense(A,1,&row,nz,cols,vals,INSERT_VALUES);CHKERRQ(ierr);
724ba8c8a56SBarry Smith       ierr = MatRestoreRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr);
72539ddd567SLois Curfman McInnes       row++;
7268965ea79SLois Curfman McInnes     }
7278965ea79SLois Curfman McInnes 
7286d4a8577SBarry Smith     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
7296d4a8577SBarry Smith     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
730b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
731b9b97703SBarry Smith     if (!rank) {
7326831982aSBarry Smith       ierr = MatView(((Mat_MPIDense*)(A->data))->A,sviewer);CHKERRQ(ierr);
7338965ea79SLois Curfman McInnes     }
734b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
735b0a32e0cSBarry Smith     ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
7368965ea79SLois Curfman McInnes     ierr = MatDestroy(A);CHKERRQ(ierr);
7378965ea79SLois Curfman McInnes   }
7383a40ed3dSBarry Smith   PetscFunctionReturn(0);
7398965ea79SLois Curfman McInnes }
7408965ea79SLois Curfman McInnes 
7414a2ae208SSatish Balay #undef __FUNCT__
7424a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense"
743dfbe8321SBarry Smith PetscErrorCode MatView_MPIDense(Mat mat,PetscViewer viewer)
7448965ea79SLois Curfman McInnes {
745dfbe8321SBarry Smith   PetscErrorCode ierr;
74632077d6dSBarry Smith   PetscTruth     iascii,isbinary,isdraw,issocket;
7478965ea79SLois Curfman McInnes 
748433994e6SBarry Smith   PetscFunctionBegin;
7490f5bd95cSBarry Smith 
75032077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
751fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
752b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr);
753fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
7540f5bd95cSBarry Smith 
75532077d6dSBarry Smith   if (iascii || issocket || isdraw) {
756f1af5d2fSBarry Smith     ierr = MatView_MPIDense_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
7570f5bd95cSBarry Smith   } else if (isbinary) {
7583a40ed3dSBarry Smith     ierr = MatView_MPIDense_Binary(mat,viewer);CHKERRQ(ierr);
7595cd90555SBarry Smith   } else {
760958c9bccSBarry Smith     SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPI dense matrix",((PetscObject)viewer)->type_name);
7618965ea79SLois Curfman McInnes   }
7623a40ed3dSBarry Smith   PetscFunctionReturn(0);
7638965ea79SLois Curfman McInnes }
7648965ea79SLois Curfman McInnes 
7654a2ae208SSatish Balay #undef __FUNCT__
7664a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIDense"
767dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info)
7688965ea79SLois Curfman McInnes {
7693501a2bdSLois Curfman McInnes   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
7703501a2bdSLois Curfman McInnes   Mat            mdn = mat->A;
771dfbe8321SBarry Smith   PetscErrorCode ierr;
772329f5518SBarry Smith   PetscReal      isend[5],irecv[5];
7738965ea79SLois Curfman McInnes 
7743a40ed3dSBarry Smith   PetscFunctionBegin;
7754e220ebcSLois Curfman McInnes   info->block_size     = 1.0;
7764e220ebcSLois Curfman McInnes   ierr = MatGetInfo(mdn,MAT_LOCAL,info);CHKERRQ(ierr);
7774e220ebcSLois Curfman McInnes   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
7784e220ebcSLois Curfman McInnes   isend[3] = info->memory;  isend[4] = info->mallocs;
7798965ea79SLois Curfman McInnes   if (flag == MAT_LOCAL) {
7804e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
7814e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
7824e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
7834e220ebcSLois Curfman McInnes     info->memory       = isend[3];
7844e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
7858965ea79SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_MAX) {
7867adad957SLisandro Dalcin     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,((PetscObject)A)->comm);CHKERRQ(ierr);
7874e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
7884e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
7894e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
7904e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
7914e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
7928965ea79SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_SUM) {
7937adad957SLisandro Dalcin     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,((PetscObject)A)->comm);CHKERRQ(ierr);
7944e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
7954e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
7964e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
7974e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
7984e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
7998965ea79SLois Curfman McInnes   }
8004e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
8014e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
8024e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
8033a40ed3dSBarry Smith   PetscFunctionReturn(0);
8048965ea79SLois Curfman McInnes }
8058965ea79SLois Curfman McInnes 
8064a2ae208SSatish Balay #undef __FUNCT__
8074a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIDense"
8084e0d8c25SBarry Smith PetscErrorCode MatSetOption_MPIDense(Mat A,MatOption op,PetscTruth flg)
8098965ea79SLois Curfman McInnes {
81039ddd567SLois Curfman McInnes   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
811dfbe8321SBarry Smith   PetscErrorCode ierr;
8128965ea79SLois Curfman McInnes 
8133a40ed3dSBarry Smith   PetscFunctionBegin;
81412c028f9SKris Buschelman   switch (op) {
815512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
81612c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
81712c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
8184e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
81912c028f9SKris Buschelman     break;
82012c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
8214e0d8c25SBarry Smith     a->roworiented = flg;
8224e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
82312c028f9SKris Buschelman     break;
8244e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
82512c028f9SKris Buschelman   case MAT_USE_HASH_TABLE:
826290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
82712c028f9SKris Buschelman     break;
82812c028f9SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
8294e0d8c25SBarry Smith     a->donotstash = flg;
83012c028f9SKris Buschelman     break;
83177e54ba9SKris Buschelman   case MAT_SYMMETRIC:
83277e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
8339a4540c5SBarry Smith   case MAT_HERMITIAN:
8349a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
835600fe468SBarry Smith   case MAT_IGNORE_LOWER_TRIANGULAR:
836290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
83777e54ba9SKris Buschelman     break;
83812c028f9SKris Buschelman   default:
839600fe468SBarry Smith     SETERRQ1(PETSC_ERR_SUP,"unknown option %s",MatOptions[op]);
8403a40ed3dSBarry Smith   }
8413a40ed3dSBarry Smith   PetscFunctionReturn(0);
8428965ea79SLois Curfman McInnes }
8438965ea79SLois Curfman McInnes 
8448965ea79SLois Curfman McInnes 
8454a2ae208SSatish Balay #undef __FUNCT__
8464a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIDense"
847dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIDense(Mat A,Vec ll,Vec rr)
8485b2fa520SLois Curfman McInnes {
8495b2fa520SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)A->data;
8505b2fa520SLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)mdn->A->data;
85187828ca2SBarry Smith   PetscScalar    *l,*r,x,*v;
852dfbe8321SBarry Smith   PetscErrorCode ierr;
853d0f46423SBarry Smith   PetscInt       i,j,s2a,s3a,s2,s3,m=mdn->A->rmap->n,n=mdn->A->cmap->n;
8545b2fa520SLois Curfman McInnes 
8555b2fa520SLois Curfman McInnes   PetscFunctionBegin;
85672d926a5SLois Curfman McInnes   ierr = MatGetLocalSize(A,&s2,&s3);CHKERRQ(ierr);
8575b2fa520SLois Curfman McInnes   if (ll) {
85872d926a5SLois Curfman McInnes     ierr = VecGetLocalSize(ll,&s2a);CHKERRQ(ierr);
859175be7b4SMatthew Knepley     if (s2a != s2) SETERRQ2(PETSC_ERR_ARG_SIZ,"Left scaling vector non-conforming local size, %d != %d.", s2a, s2);
8601ebc52fbSHong Zhang     ierr = VecGetArray(ll,&l);CHKERRQ(ierr);
8615b2fa520SLois Curfman McInnes     for (i=0; i<m; i++) {
8625b2fa520SLois Curfman McInnes       x = l[i];
8635b2fa520SLois Curfman McInnes       v = mat->v + i;
8645b2fa520SLois Curfman McInnes       for (j=0; j<n; j++) { (*v) *= x; v+= m;}
8655b2fa520SLois Curfman McInnes     }
8661ebc52fbSHong Zhang     ierr = VecRestoreArray(ll,&l);CHKERRQ(ierr);
867efee365bSSatish Balay     ierr = PetscLogFlops(n*m);CHKERRQ(ierr);
8685b2fa520SLois Curfman McInnes   }
8695b2fa520SLois Curfman McInnes   if (rr) {
870175be7b4SMatthew Knepley     ierr = VecGetLocalSize(rr,&s3a);CHKERRQ(ierr);
871175be7b4SMatthew Knepley     if (s3a != s3) SETERRQ2(PETSC_ERR_ARG_SIZ,"Right scaling vec non-conforming local size, %d != %d.", s3a, s3);
872ca9f406cSSatish Balay     ierr = VecScatterBegin(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
873ca9f406cSSatish Balay     ierr = VecScatterEnd(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
8741ebc52fbSHong Zhang     ierr = VecGetArray(mdn->lvec,&r);CHKERRQ(ierr);
8755b2fa520SLois Curfman McInnes     for (i=0; i<n; i++) {
8765b2fa520SLois Curfman McInnes       x = r[i];
8775b2fa520SLois Curfman McInnes       v = mat->v + i*m;
8785b2fa520SLois Curfman McInnes       for (j=0; j<m; j++) { (*v++) *= x;}
8795b2fa520SLois Curfman McInnes     }
8801ebc52fbSHong Zhang     ierr = VecRestoreArray(mdn->lvec,&r);CHKERRQ(ierr);
881efee365bSSatish Balay     ierr = PetscLogFlops(n*m);CHKERRQ(ierr);
8825b2fa520SLois Curfman McInnes   }
8835b2fa520SLois Curfman McInnes   PetscFunctionReturn(0);
8845b2fa520SLois Curfman McInnes }
8855b2fa520SLois Curfman McInnes 
8864a2ae208SSatish Balay #undef __FUNCT__
8874a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIDense"
888dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIDense(Mat A,NormType type,PetscReal *nrm)
889096963f5SLois Curfman McInnes {
8903501a2bdSLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)A->data;
8913501a2bdSLois Curfman McInnes   Mat_SeqDense   *mat = (Mat_SeqDense*)mdn->A->data;
892dfbe8321SBarry Smith   PetscErrorCode ierr;
89313f74950SBarry Smith   PetscInt       i,j;
894329f5518SBarry Smith   PetscReal      sum = 0.0;
89587828ca2SBarry Smith   PetscScalar    *v = mat->v;
8963501a2bdSLois Curfman McInnes 
8973a40ed3dSBarry Smith   PetscFunctionBegin;
8983501a2bdSLois Curfman McInnes   if (mdn->size == 1) {
899064f8208SBarry Smith     ierr =  MatNorm(mdn->A,type,nrm);CHKERRQ(ierr);
9003501a2bdSLois Curfman McInnes   } else {
9013501a2bdSLois Curfman McInnes     if (type == NORM_FROBENIUS) {
902d0f46423SBarry Smith       for (i=0; i<mdn->A->cmap->n*mdn->A->rmap->n; i++) {
903aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
904329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
9053501a2bdSLois Curfman McInnes #else
9063501a2bdSLois Curfman McInnes         sum += (*v)*(*v); v++;
9073501a2bdSLois Curfman McInnes #endif
9083501a2bdSLois Curfman McInnes       }
9097adad957SLisandro Dalcin       ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_SUM,((PetscObject)A)->comm);CHKERRQ(ierr);
910064f8208SBarry Smith       *nrm = sqrt(*nrm);
911d0f46423SBarry Smith       ierr = PetscLogFlops(2*mdn->A->cmap->n*mdn->A->rmap->n);CHKERRQ(ierr);
9123a40ed3dSBarry Smith     } else if (type == NORM_1) {
913329f5518SBarry Smith       PetscReal *tmp,*tmp2;
914d0f46423SBarry Smith       ierr = PetscMalloc(2*A->cmap->N*sizeof(PetscReal),&tmp);CHKERRQ(ierr);
915d0f46423SBarry Smith       tmp2 = tmp + A->cmap->N;
916d0f46423SBarry Smith       ierr = PetscMemzero(tmp,2*A->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
917064f8208SBarry Smith       *nrm = 0.0;
9183501a2bdSLois Curfman McInnes       v = mat->v;
919d0f46423SBarry Smith       for (j=0; j<mdn->A->cmap->n; j++) {
920d0f46423SBarry Smith         for (i=0; i<mdn->A->rmap->n; i++) {
92167e560aaSBarry Smith           tmp[j] += PetscAbsScalar(*v);  v++;
9223501a2bdSLois Curfman McInnes         }
9233501a2bdSLois Curfman McInnes       }
924d0f46423SBarry Smith       ierr = MPI_Allreduce(tmp,tmp2,A->cmap->N,MPIU_REAL,MPI_SUM,((PetscObject)A)->comm);CHKERRQ(ierr);
925d0f46423SBarry Smith       for (j=0; j<A->cmap->N; j++) {
926064f8208SBarry Smith         if (tmp2[j] > *nrm) *nrm = tmp2[j];
9273501a2bdSLois Curfman McInnes       }
928606d414cSSatish Balay       ierr = PetscFree(tmp);CHKERRQ(ierr);
929d0f46423SBarry Smith       ierr = PetscLogFlops(A->cmap->n*A->rmap->n);CHKERRQ(ierr);
9303a40ed3dSBarry Smith     } else if (type == NORM_INFINITY) { /* max row norm */
931329f5518SBarry Smith       PetscReal ntemp;
9323501a2bdSLois Curfman McInnes       ierr = MatNorm(mdn->A,type,&ntemp);CHKERRQ(ierr);
9337adad957SLisandro Dalcin       ierr = MPI_Allreduce(&ntemp,nrm,1,MPIU_REAL,MPI_MAX,((PetscObject)A)->comm);CHKERRQ(ierr);
9343a40ed3dSBarry Smith     } else {
93529bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"No support for two norm");
9363501a2bdSLois Curfman McInnes     }
9373501a2bdSLois Curfman McInnes   }
9383a40ed3dSBarry Smith   PetscFunctionReturn(0);
9393501a2bdSLois Curfman McInnes }
9403501a2bdSLois Curfman McInnes 
9414a2ae208SSatish Balay #undef __FUNCT__
9424a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPIDense"
943fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIDense(Mat A,MatReuse reuse,Mat *matout)
9443501a2bdSLois Curfman McInnes {
9453501a2bdSLois Curfman McInnes   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
9463501a2bdSLois Curfman McInnes   Mat_SeqDense   *Aloc = (Mat_SeqDense*)a->A->data;
9473501a2bdSLois Curfman McInnes   Mat            B;
948d0f46423SBarry Smith   PetscInt       M = A->rmap->N,N = A->cmap->N,m,n,*rwork,rstart = A->rmap->rstart;
9496849ba73SBarry Smith   PetscErrorCode ierr;
95013f74950SBarry Smith   PetscInt       j,i;
95187828ca2SBarry Smith   PetscScalar    *v;
9523501a2bdSLois Curfman McInnes 
9533a40ed3dSBarry Smith   PetscFunctionBegin;
954e9695a30SBarry Smith   if (reuse == MAT_REUSE_MATRIX && A == *matout && M != N) SETERRQ(PETSC_ERR_SUP,"Supports square matrix only in-place");
955fc4dec0aSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || A == *matout) {
9567adad957SLisandro Dalcin     ierr = MatCreate(((PetscObject)A)->comm,&B);CHKERRQ(ierr);
957d0f46423SBarry Smith     ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr);
9587adad957SLisandro Dalcin     ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr);
959878740d9SKris Buschelman     ierr = MatMPIDenseSetPreallocation(B,PETSC_NULL);CHKERRQ(ierr);
960fc4dec0aSBarry Smith   } else {
961fc4dec0aSBarry Smith     B = *matout;
962fc4dec0aSBarry Smith   }
9633501a2bdSLois Curfman McInnes 
964d0f46423SBarry Smith   m = a->A->rmap->n; n = a->A->cmap->n; v = Aloc->v;
9651acff37aSSatish Balay   ierr = PetscMalloc(m*sizeof(PetscInt),&rwork);CHKERRQ(ierr);
9663501a2bdSLois Curfman McInnes   for (i=0; i<m; i++) rwork[i] = rstart + i;
9671acff37aSSatish Balay   for (j=0; j<n; j++) {
9683501a2bdSLois Curfman McInnes     ierr = MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES);CHKERRQ(ierr);
9693501a2bdSLois Curfman McInnes     v   += m;
9703501a2bdSLois Curfman McInnes   }
971606d414cSSatish Balay   ierr = PetscFree(rwork);CHKERRQ(ierr);
9726d4a8577SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
9736d4a8577SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
974815cbec1SBarry Smith   if (reuse == MAT_INITIAL_MATRIX || *matout != A) {
9753501a2bdSLois Curfman McInnes     *matout = B;
9763501a2bdSLois Curfman McInnes   } else {
977273d9f13SBarry Smith     ierr = MatHeaderCopy(A,B);CHKERRQ(ierr);
9783501a2bdSLois Curfman McInnes   }
9793a40ed3dSBarry Smith   PetscFunctionReturn(0);
980096963f5SLois Curfman McInnes }
981096963f5SLois Curfman McInnes 
982d9eff348SSatish Balay #include "petscblaslapack.h"
9834a2ae208SSatish Balay #undef __FUNCT__
9844a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIDense"
985f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIDense(Mat inA,PetscScalar alpha)
98644cd7ae7SLois Curfman McInnes {
98744cd7ae7SLois Curfman McInnes   Mat_MPIDense   *A = (Mat_MPIDense*)inA->data;
98844cd7ae7SLois Curfman McInnes   Mat_SeqDense   *a = (Mat_SeqDense*)A->A->data;
989f4df32b1SMatthew Knepley   PetscScalar    oalpha = alpha;
990efee365bSSatish Balay   PetscErrorCode ierr;
991d0f46423SBarry Smith   PetscBLASInt   one = 1,nz = PetscBLASIntCast(inA->rmap->n*inA->cmap->N);
99244cd7ae7SLois Curfman McInnes 
9933a40ed3dSBarry Smith   PetscFunctionBegin;
994f4df32b1SMatthew Knepley   BLASscal_(&nz,&oalpha,a->v,&one);
995efee365bSSatish Balay   ierr = PetscLogFlops(nz);CHKERRQ(ierr);
9963a40ed3dSBarry Smith   PetscFunctionReturn(0);
99744cd7ae7SLois Curfman McInnes }
99844cd7ae7SLois Curfman McInnes 
9996849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat *);
10008965ea79SLois Curfman McInnes 
10014a2ae208SSatish Balay #undef __FUNCT__
10024a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPIDense"
1003dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPIDense(Mat A)
1004273d9f13SBarry Smith {
1005dfbe8321SBarry Smith   PetscErrorCode ierr;
1006273d9f13SBarry Smith 
1007273d9f13SBarry Smith   PetscFunctionBegin;
1008273d9f13SBarry Smith   ierr =  MatMPIDenseSetPreallocation(A,0);CHKERRQ(ierr);
1009273d9f13SBarry Smith   PetscFunctionReturn(0);
1010273d9f13SBarry Smith }
1011273d9f13SBarry Smith 
101201b82886SBarry Smith #if defined(PETSC_HAVE_PLAPACK)
1013eae6fb2eSBarry Smith 
1014eae6fb2eSBarry Smith #undef __FUNCT__
1015eae6fb2eSBarry Smith #define __FUNCT__ "MatMPIDenseCopyToPlapack"
1016eae6fb2eSBarry Smith PetscErrorCode MatMPIDenseCopyToPlapack(Mat A,Mat F)
1017eae6fb2eSBarry Smith {
1018eae6fb2eSBarry Smith   Mat_Plapack    *lu = (Mat_Plapack*)(F)->spptr;
1019eae6fb2eSBarry Smith   PetscErrorCode ierr;
1020d0f46423SBarry Smith   PetscInt       M=A->cmap->N,m=A->rmap->n,rstart;
1021eae6fb2eSBarry Smith   PetscScalar    *array;
1022eae6fb2eSBarry Smith   PetscReal      one = 1.0;
1023eae6fb2eSBarry Smith 
1024eae6fb2eSBarry Smith   PetscFunctionBegin;
10252fbe02b9SBarry Smith   /* Copy A into F->lu->A */
1026eae6fb2eSBarry Smith   ierr = PLA_Obj_set_to_zero(lu->A);CHKERRQ(ierr);
1027eae6fb2eSBarry Smith   ierr = PLA_API_begin();CHKERRQ(ierr);
1028eae6fb2eSBarry Smith   ierr = PLA_Obj_API_open(lu->A);CHKERRQ(ierr);
102979b0a62dSBarry Smith   ierr = MatGetOwnershipRange(A,&rstart,PETSC_NULL);CHKERRQ(ierr);
1030eae6fb2eSBarry Smith   ierr = MatGetArray(A,&array);CHKERRQ(ierr);
1031eae6fb2eSBarry Smith   ierr = PLA_API_axpy_matrix_to_global(m,M, &one,(void *)array,m,lu->A,rstart,0);CHKERRQ(ierr);
1032eae6fb2eSBarry Smith   ierr = MatRestoreArray(A,&array);CHKERRQ(ierr);
1033eae6fb2eSBarry Smith   ierr = PLA_Obj_API_close(lu->A);CHKERRQ(ierr);
1034eae6fb2eSBarry Smith   ierr = PLA_API_end();CHKERRQ(ierr);
1035eae6fb2eSBarry Smith   lu->rstart = rstart;
1036eae6fb2eSBarry Smith   PetscFunctionReturn(0);
1037eae6fb2eSBarry Smith }
1038eae6fb2eSBarry Smith 
103901b82886SBarry Smith #undef __FUNCT__
10402fbe02b9SBarry Smith #define __FUNCT__ "MatMPIDenseCopyFromPlapack"
10412fbe02b9SBarry Smith PetscErrorCode MatMPIDenseCopyFromPlapack(Mat F,Mat A)
10422fbe02b9SBarry Smith {
10432fbe02b9SBarry Smith   Mat_Plapack    *lu = (Mat_Plapack*)(F)->spptr;
10442fbe02b9SBarry Smith   PetscErrorCode ierr;
1045d0f46423SBarry Smith   PetscInt       M=A->cmap->N,m=A->rmap->n,rstart;
10462fbe02b9SBarry Smith   PetscScalar    *array;
10472fbe02b9SBarry Smith   PetscReal      one = 1.0;
10482fbe02b9SBarry Smith 
10492fbe02b9SBarry Smith   PetscFunctionBegin;
10502fbe02b9SBarry Smith   /* Copy F into A->lu->A */
105179b0a62dSBarry Smith   ierr = MatZeroEntries(A);CHKERRQ(ierr);
10522fbe02b9SBarry Smith   ierr = PLA_API_begin();CHKERRQ(ierr);
10532fbe02b9SBarry Smith   ierr = PLA_Obj_API_open(lu->A);CHKERRQ(ierr);
10542fbe02b9SBarry Smith   ierr = MatGetOwnershipRange(A,&rstart,PETSC_NULL);CHKERRQ(ierr);
10552fbe02b9SBarry Smith   ierr = MatGetArray(A,&array);CHKERRQ(ierr);
10562fbe02b9SBarry Smith   ierr = PLA_API_axpy_global_to_matrix(m,M, &one,lu->A,rstart,0,(void *)array,m);CHKERRQ(ierr);
10572fbe02b9SBarry Smith   ierr = MatRestoreArray(A,&array);CHKERRQ(ierr);
10582fbe02b9SBarry Smith   ierr = PLA_Obj_API_close(lu->A);CHKERRQ(ierr);
10592fbe02b9SBarry Smith   ierr = PLA_API_end();CHKERRQ(ierr);
10602fbe02b9SBarry Smith   lu->rstart = rstart;
10612fbe02b9SBarry Smith   PetscFunctionReturn(0);
10622fbe02b9SBarry Smith }
10632fbe02b9SBarry Smith 
10642fbe02b9SBarry Smith #undef __FUNCT__
10652fbe02b9SBarry Smith #define __FUNCT__ "MatMatMultNumeric_MPIDense_MPIDense"
10662fbe02b9SBarry Smith PetscErrorCode MatMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C)
10672fbe02b9SBarry Smith {
10682fbe02b9SBarry Smith   PetscErrorCode ierr;
10692fbe02b9SBarry Smith   Mat_Plapack    *luA = (Mat_Plapack*)A->spptr;
10702fbe02b9SBarry Smith   Mat_Plapack    *luB = (Mat_Plapack*)B->spptr;
10712fbe02b9SBarry Smith   Mat_Plapack    *luC = (Mat_Plapack*)C->spptr;
10722fbe02b9SBarry Smith   PLA_Obj        alpha = NULL,beta = NULL;
10732fbe02b9SBarry Smith 
10742fbe02b9SBarry Smith   PetscFunctionBegin;
10752fbe02b9SBarry Smith   ierr = MatMPIDenseCopyToPlapack(A,A);CHKERRQ(ierr);
10762fbe02b9SBarry Smith   ierr = MatMPIDenseCopyToPlapack(B,B);CHKERRQ(ierr);
10772fbe02b9SBarry Smith 
10786e6f9017SBarry Smith   /*
1079cb2480eaSBarry Smith   ierr = PLA_Global_show("A = ",luA->A,"%g ","");CHKERRQ(ierr);
1080cb2480eaSBarry Smith   ierr = PLA_Global_show("B = ",luB->A,"%g ","");CHKERRQ(ierr);
10816e6f9017SBarry Smith   */
1082cb2480eaSBarry Smith 
10832fbe02b9SBarry Smith   /* do the multiply in PLA  */
108479b0a62dSBarry Smith   ierr = PLA_Create_constants_conf_to(luA->A,NULL,NULL,&alpha);CHKERRQ(ierr);
108579b0a62dSBarry Smith   ierr = PLA_Create_constants_conf_to(luC->A,NULL,&beta,NULL);CHKERRQ(ierr);
108679b0a62dSBarry Smith   CHKMEMQ;
10872fbe02b9SBarry Smith 
1088f0e3846dSSatish Balay   ierr = PLA_Gemm(PLA_NO_TRANSPOSE,PLA_NO_TRANSPOSE,alpha,luA->A,luB->A,beta,luC->A); /* CHKERRQ(ierr); */
108979b0a62dSBarry Smith   CHKMEMQ;
10902fbe02b9SBarry Smith   ierr = PLA_Obj_free(&alpha);CHKERRQ(ierr);
10912fbe02b9SBarry Smith   ierr = PLA_Obj_free(&beta);CHKERRQ(ierr);
10922fbe02b9SBarry Smith 
10936e6f9017SBarry Smith   /*
1094cb2480eaSBarry Smith   ierr = PLA_Global_show("C = ",luC->A,"%g ","");CHKERRQ(ierr);
10956e6f9017SBarry Smith   */
10962fbe02b9SBarry Smith   ierr = MatMPIDenseCopyFromPlapack(C,C);CHKERRQ(ierr);
10972fbe02b9SBarry Smith   PetscFunctionReturn(0);
10982fbe02b9SBarry Smith }
10992fbe02b9SBarry Smith 
11002fbe02b9SBarry Smith #undef __FUNCT__
11012fbe02b9SBarry Smith #define __FUNCT__ "MatMatMultSymbolic_MPIDense_MPIDense"
11022fbe02b9SBarry Smith PetscErrorCode MatMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat *C)
11032fbe02b9SBarry Smith {
11042fbe02b9SBarry Smith   PetscErrorCode ierr;
1105d0f46423SBarry Smith   PetscInt       m=A->rmap->n,n=B->cmap->n;
11062fbe02b9SBarry Smith   Mat            Cmat;
11072fbe02b9SBarry Smith 
11082fbe02b9SBarry Smith   PetscFunctionBegin;
1109d0f46423SBarry Smith   if (A->cmap->n != B->rmap->n) SETERRQ2(PETSC_ERR_ARG_SIZ,"A->cmap->n %d != B->rmap->n %d\n",A->cmap->n,B->rmap->n);
11106e6f9017SBarry Smith   SETERRQ(PETSC_ERR_LIB,"Due to aparent bugs in PLAPACK,this is not currently supported");
11112fbe02b9SBarry Smith   ierr = MatCreate(((PetscObject)B)->comm,&Cmat);CHKERRQ(ierr);
1112d0f46423SBarry Smith   ierr = MatSetSizes(Cmat,m,n,A->rmap->N,B->cmap->N);CHKERRQ(ierr);
11132fbe02b9SBarry Smith   ierr = MatSetType(Cmat,MATMPIDENSE);CHKERRQ(ierr);
11142fbe02b9SBarry Smith   ierr = MatAssemblyBegin(Cmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
11152fbe02b9SBarry Smith   ierr = MatAssemblyEnd(Cmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
111685bd4cefSHong Zhang 
11172fbe02b9SBarry Smith   *C = Cmat;
11182fbe02b9SBarry Smith   PetscFunctionReturn(0);
11192fbe02b9SBarry Smith }
11202fbe02b9SBarry Smith 
11212fbe02b9SBarry Smith #undef __FUNCT__
11222fbe02b9SBarry Smith #define __FUNCT__ "MatMatMult_MPIDense_MPIDense"
11232fbe02b9SBarry Smith PetscErrorCode MatMatMult_MPIDense_MPIDense(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C)
11242fbe02b9SBarry Smith {
11252fbe02b9SBarry Smith   PetscErrorCode ierr;
11262fbe02b9SBarry Smith 
11272fbe02b9SBarry Smith   PetscFunctionBegin;
11282fbe02b9SBarry Smith   if (scall == MAT_INITIAL_MATRIX){
11292fbe02b9SBarry Smith     ierr = MatMatMultSymbolic_MPIDense_MPIDense(A,B,fill,C);CHKERRQ(ierr);
11302fbe02b9SBarry Smith   }
11312fbe02b9SBarry Smith   ierr = MatMatMultNumeric_MPIDense_MPIDense(A,B,*C);CHKERRQ(ierr);
11322fbe02b9SBarry Smith   PetscFunctionReturn(0);
11332fbe02b9SBarry Smith }
11342fbe02b9SBarry Smith 
1135ab235cb6SHong Zhang #undef __FUNCT__
11366c995c7dSHong Zhang #define __FUNCT__ "MatSolve_MPIDense"
11376c995c7dSHong Zhang PetscErrorCode MatSolve_MPIDense(Mat A,Vec b,Vec x)
11386c995c7dSHong Zhang {
11396c995c7dSHong Zhang   MPI_Comm       comm = ((PetscObject)A)->comm;
11406c995c7dSHong Zhang   Mat_Plapack    *lu = (Mat_Plapack*)A->spptr;
11416c995c7dSHong Zhang   PetscErrorCode ierr;
1142d0f46423SBarry Smith   PetscInt       M=A->rmap->N,m=A->rmap->n,rstart,i,j,*idx_pla,*idx_petsc,loc_m,loc_stride;
11436c995c7dSHong Zhang   PetscScalar    *array;
11446c995c7dSHong Zhang   PetscReal      one = 1.0;
11456c995c7dSHong Zhang   PetscMPIInt    size,rank,r_rank,r_nproc,c_rank,c_nproc;;
11466c995c7dSHong Zhang   PLA_Obj        v_pla = NULL;
11476c995c7dSHong Zhang   PetscScalar    *loc_buf;
11486c995c7dSHong Zhang   Vec            loc_x;
11496c995c7dSHong Zhang 
11506c995c7dSHong Zhang   PetscFunctionBegin;
11516c995c7dSHong Zhang   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
11526c995c7dSHong Zhang   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
11536c995c7dSHong Zhang 
11546c995c7dSHong Zhang   /* Create PLAPACK vector objects, then copy b into PLAPACK b */
11556c995c7dSHong Zhang   PLA_Mvector_create(lu->datatype,M,1,lu->templ,PLA_ALIGN_FIRST,&v_pla);
11566c995c7dSHong Zhang   PLA_Obj_set_to_zero(v_pla);
11576c995c7dSHong Zhang 
11586c995c7dSHong Zhang   /* Copy b into rhs_pla */
11596c995c7dSHong Zhang   PLA_API_begin();
11606c995c7dSHong Zhang   PLA_Obj_API_open(v_pla);
11616c995c7dSHong Zhang   ierr = VecGetArray(b,&array);CHKERRQ(ierr);
11626c995c7dSHong Zhang   PLA_API_axpy_vector_to_global(m,&one,(void *)array,1,v_pla,lu->rstart);
11636c995c7dSHong Zhang   ierr = VecRestoreArray(b,&array);CHKERRQ(ierr);
11646c995c7dSHong Zhang   PLA_Obj_API_close(v_pla);
11656c995c7dSHong Zhang   PLA_API_end();
11666c995c7dSHong Zhang 
11676c995c7dSHong Zhang   if (A->factor == MAT_FACTOR_LU){
11686c995c7dSHong Zhang     /* Apply the permutations to the right hand sides */
11696c995c7dSHong Zhang     PLA_Apply_pivots_to_rows (v_pla,lu->pivots);
11706c995c7dSHong Zhang 
11716c995c7dSHong Zhang     /* Solve L y = b, overwriting b with y */
11726c995c7dSHong Zhang     PLA_Trsv( PLA_LOWER_TRIANGULAR,PLA_NO_TRANSPOSE,PLA_UNIT_DIAG,lu->A,v_pla );
11736c995c7dSHong Zhang 
11746c995c7dSHong Zhang     /* Solve U x = y (=b), overwriting b with x */
11756c995c7dSHong Zhang     PLA_Trsv( PLA_UPPER_TRIANGULAR,PLA_NO_TRANSPOSE,PLA_NONUNIT_DIAG,lu->A,v_pla );
11766c995c7dSHong Zhang   } else { /*MAT_FACTOR_CHOLESKY */
11776c995c7dSHong Zhang     PLA_Trsv( PLA_LOWER_TRIANGULAR,PLA_NO_TRANSPOSE,PLA_NONUNIT_DIAG,lu->A,v_pla);
11786c995c7dSHong Zhang     PLA_Trsv( PLA_LOWER_TRIANGULAR,(lu->datatype == MPI_DOUBLE ? PLA_TRANSPOSE : PLA_CONJUGATE_TRANSPOSE),
11796c995c7dSHong Zhang                                     PLA_NONUNIT_DIAG,lu->A,v_pla);
11806c995c7dSHong Zhang   }
11816c995c7dSHong Zhang 
11826c995c7dSHong Zhang   /* Copy PLAPACK x into Petsc vector x  */
11836c995c7dSHong Zhang   PLA_Obj_local_length(v_pla, &loc_m);
11846c995c7dSHong Zhang   PLA_Obj_local_buffer(v_pla, (void**)&loc_buf);
11856c995c7dSHong Zhang   PLA_Obj_local_stride(v_pla, &loc_stride);
11866c995c7dSHong Zhang   /*
11876c995c7dSHong Zhang     PetscPrintf(PETSC_COMM_SELF," [%d] b - local_m %d local_stride %d, loc_buf: %g %g, nb: %d\n",rank,loc_m,loc_stride,loc_buf[0],loc_buf[(loc_m-1)*loc_stride],lu->nb);
11886c995c7dSHong Zhang   */
11896c995c7dSHong Zhang   ierr = VecCreateSeqWithArray(PETSC_COMM_SELF,loc_m*loc_stride,loc_buf,&loc_x);CHKERRQ(ierr);
11906c995c7dSHong Zhang   if (!lu->pla_solved){
11916c995c7dSHong Zhang 
11926c995c7dSHong Zhang     PLA_Temp_comm_row_info(lu->templ,&lu->comm_2d,&r_rank,&r_nproc);
11936c995c7dSHong Zhang     PLA_Temp_comm_col_info(lu->templ,&lu->comm_2d,&c_rank,&c_nproc);
11946c995c7dSHong Zhang     /* printf(" [%d] rank: %d %d, nproc: %d %d\n",rank,r_rank,c_rank,r_nproc,c_nproc); */
11956c995c7dSHong Zhang 
11966c995c7dSHong Zhang     /* Create IS and cts for VecScatterring */
11976c995c7dSHong Zhang     PLA_Obj_local_length(v_pla, &loc_m);
11986c995c7dSHong Zhang     PLA_Obj_local_stride(v_pla, &loc_stride);
11996c995c7dSHong Zhang     ierr = PetscMalloc((2*loc_m+1)*sizeof(PetscInt),&idx_pla);CHKERRQ(ierr);
12006c995c7dSHong Zhang     idx_petsc = idx_pla + loc_m;
12016c995c7dSHong Zhang 
12026c995c7dSHong Zhang     rstart = (r_rank*c_nproc+c_rank)*lu->nb;
12036c995c7dSHong Zhang     for (i=0; i<loc_m; i+=lu->nb){
12046c995c7dSHong Zhang       j = 0;
12056c995c7dSHong Zhang       while (j < lu->nb && i+j < loc_m){
12066c995c7dSHong Zhang         idx_petsc[i+j] = rstart + j; j++;
12076c995c7dSHong Zhang       }
12086c995c7dSHong Zhang       rstart += size*lu->nb;
12096c995c7dSHong Zhang     }
12106c995c7dSHong Zhang 
12116c995c7dSHong Zhang     for (i=0; i<loc_m; i++) idx_pla[i] = i*loc_stride;
12126c995c7dSHong Zhang 
12136c995c7dSHong Zhang     ierr = ISCreateGeneral(PETSC_COMM_SELF,loc_m,idx_pla,&lu->is_pla);CHKERRQ(ierr);
12146c995c7dSHong Zhang     ierr = ISCreateGeneral(PETSC_COMM_SELF,loc_m,idx_petsc,&lu->is_petsc);CHKERRQ(ierr);
12156c995c7dSHong Zhang     ierr = PetscFree(idx_pla);CHKERRQ(ierr);
12166c995c7dSHong Zhang     ierr = VecScatterCreate(loc_x,lu->is_pla,x,lu->is_petsc,&lu->ctx);CHKERRQ(ierr);
12176c995c7dSHong Zhang   }
12186c995c7dSHong Zhang   ierr = VecScatterBegin(lu->ctx,loc_x,x,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
12196c995c7dSHong Zhang   ierr = VecScatterEnd(lu->ctx,loc_x,x,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
12206c995c7dSHong Zhang 
12216c995c7dSHong Zhang   /* Free data */
12226c995c7dSHong Zhang   ierr = VecDestroy(loc_x);CHKERRQ(ierr);
12236c995c7dSHong Zhang   PLA_Obj_free(&v_pla);
12246c995c7dSHong Zhang 
12256c995c7dSHong Zhang   lu->pla_solved = PETSC_TRUE;
12266c995c7dSHong Zhang   PetscFunctionReturn(0);
12276c995c7dSHong Zhang }
12286c995c7dSHong Zhang 
12296c995c7dSHong Zhang #undef __FUNCT__
12306c995c7dSHong Zhang #define __FUNCT__ "MatLUFactorNumeric_MPIDense"
12310481f469SBarry Smith PetscErrorCode MatLUFactorNumeric_MPIDense(Mat F,Mat A,const MatFactorInfo *info)
12326c995c7dSHong Zhang {
1233719d5645SBarry Smith   Mat_Plapack    *lu = (Mat_Plapack*)(F)->spptr;
12346c995c7dSHong Zhang   PetscErrorCode ierr;
1235d0f46423SBarry Smith   PetscInt       M=A->rmap->N,m=A->rmap->n,rstart,rend;
12366c995c7dSHong Zhang   PetscInt       info_pla=0;
12376c995c7dSHong Zhang   PetscScalar    *array,one = 1.0;
12386c995c7dSHong Zhang 
12396c995c7dSHong Zhang   PetscFunctionBegin;
12406c995c7dSHong Zhang   if (lu->mstruct == SAME_NONZERO_PATTERN){
12416c995c7dSHong Zhang     PLA_Obj_free(&lu->A);
12426c995c7dSHong Zhang     PLA_Obj_free (&lu->pivots);
12436c995c7dSHong Zhang   }
12446c995c7dSHong Zhang   /* Create PLAPACK matrix object */
12456c995c7dSHong Zhang   lu->A = NULL; lu->pivots = NULL;
12466c995c7dSHong Zhang   PLA_Matrix_create(lu->datatype,M,M,lu->templ,PLA_ALIGN_FIRST,PLA_ALIGN_FIRST,&lu->A);
12476c995c7dSHong Zhang   PLA_Obj_set_to_zero(lu->A);
12486c995c7dSHong Zhang   PLA_Mvector_create(MPI_INT,M,1,lu->templ,PLA_ALIGN_FIRST,&lu->pivots);
12496c995c7dSHong Zhang 
12506c995c7dSHong Zhang   /* Copy A into lu->A */
12516c995c7dSHong Zhang   PLA_API_begin();
12526c995c7dSHong Zhang   PLA_Obj_API_open(lu->A);
12536c995c7dSHong Zhang   ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr);
12546c995c7dSHong Zhang   ierr = MatGetArray(A,&array);CHKERRQ(ierr);
12556c995c7dSHong Zhang   PLA_API_axpy_matrix_to_global(m,M, &one,(void *)array,m,lu->A,rstart,0);
12566c995c7dSHong Zhang   ierr = MatRestoreArray(A,&array);CHKERRQ(ierr);
12576c995c7dSHong Zhang   PLA_Obj_API_close(lu->A);
12586c995c7dSHong Zhang   PLA_API_end();
12596c995c7dSHong Zhang 
12606c995c7dSHong Zhang   /* Factor P A -> L U overwriting lower triangular portion of A with L, upper, U */
12616c995c7dSHong Zhang   info_pla = PLA_LU(lu->A,lu->pivots);
12626c995c7dSHong Zhang   if (info_pla != 0)
12636c995c7dSHong Zhang     SETERRQ1(PETSC_ERR_MAT_LU_ZRPVT,"Zero pivot encountered at row %d from PLA_LU()",info_pla);
12646c995c7dSHong Zhang 
12656c995c7dSHong Zhang   lu->CleanUpPlapack = PETSC_TRUE;
12666c995c7dSHong Zhang   lu->rstart         = rstart;
12676c995c7dSHong Zhang   lu->mstruct        = SAME_NONZERO_PATTERN;
1268719d5645SBarry Smith   F->ops->solve      = MatSolve_MPIDense;
1269719d5645SBarry Smith   F->assembled       = PETSC_TRUE;  /* required by -ksp_view */
12706c995c7dSHong Zhang   PetscFunctionReturn(0);
12716c995c7dSHong Zhang }
12726c995c7dSHong Zhang 
12736c995c7dSHong Zhang #undef __FUNCT__
12746c995c7dSHong Zhang #define __FUNCT__ "MatCholeskyFactorNumeric_MPIDense"
12750481f469SBarry Smith PetscErrorCode MatCholeskyFactorNumeric_MPIDense(Mat F,Mat A,const MatFactorInfo *info)
12766c995c7dSHong Zhang {
1277719d5645SBarry Smith   Mat_Plapack    *lu = (Mat_Plapack*)F->spptr;
12786c995c7dSHong Zhang   PetscErrorCode ierr;
1279d0f46423SBarry Smith   PetscInt       M=A->rmap->N,m=A->rmap->n,rstart,rend;
12806c995c7dSHong Zhang   PetscInt       info_pla=0;
12816c995c7dSHong Zhang   PetscScalar    *array,one = 1.0;
12826c995c7dSHong Zhang 
12836c995c7dSHong Zhang   PetscFunctionBegin;
12846c995c7dSHong Zhang   if (lu->mstruct == SAME_NONZERO_PATTERN){
12856c995c7dSHong Zhang     PLA_Obj_free(&lu->A);
12866c995c7dSHong Zhang   }
12876c995c7dSHong Zhang   /* Create PLAPACK matrix object */
12886c995c7dSHong Zhang   lu->A      = NULL;
12896c995c7dSHong Zhang   lu->pivots = NULL;
12906c995c7dSHong Zhang   PLA_Matrix_create(lu->datatype,M,M,lu->templ,PLA_ALIGN_FIRST,PLA_ALIGN_FIRST,&lu->A);
12916c995c7dSHong Zhang 
12926c995c7dSHong Zhang   /* Copy A into lu->A */
12936c995c7dSHong Zhang   PLA_API_begin();
12946c995c7dSHong Zhang   PLA_Obj_API_open(lu->A);
12956c995c7dSHong Zhang   ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr);
12966c995c7dSHong Zhang   ierr = MatGetArray(A,&array);CHKERRQ(ierr);
12976c995c7dSHong Zhang   PLA_API_axpy_matrix_to_global(m,M, &one,(void *)array,m,lu->A,rstart,0);
12986c995c7dSHong Zhang   ierr = MatRestoreArray(A,&array);CHKERRQ(ierr);
12996c995c7dSHong Zhang   PLA_Obj_API_close(lu->A);
13006c995c7dSHong Zhang   PLA_API_end();
13016c995c7dSHong Zhang 
13026c995c7dSHong Zhang   /* Factor P A -> Chol */
13036c995c7dSHong Zhang   info_pla = PLA_Chol(PLA_LOWER_TRIANGULAR,lu->A);
13046c995c7dSHong Zhang   if (info_pla != 0)
13056c995c7dSHong Zhang     SETERRQ1( PETSC_ERR_MAT_CH_ZRPVT,"Nonpositive definite matrix detected at row %d from PLA_Chol()",info_pla);
13066c995c7dSHong Zhang 
13076c995c7dSHong Zhang   lu->CleanUpPlapack = PETSC_TRUE;
13086c995c7dSHong Zhang   lu->rstart         = rstart;
13096c995c7dSHong Zhang   lu->mstruct        = SAME_NONZERO_PATTERN;
1310719d5645SBarry Smith   F->ops->solve      = MatSolve_MPIDense;
1311719d5645SBarry Smith   F->assembled       = PETSC_TRUE;  /* required by -ksp_view */
13126c995c7dSHong Zhang   PetscFunctionReturn(0);
13136c995c7dSHong Zhang }
13146c995c7dSHong Zhang 
13156c995c7dSHong Zhang #undef __FUNCT__
1316ab235cb6SHong Zhang #define __FUNCT__ "MatFactorSymbolic_Plapack_Private"
13170481f469SBarry Smith PetscErrorCode MatFactorSymbolic_Plapack_Private(Mat F,Mat A,const MatFactorInfo *info)
1318ab235cb6SHong Zhang {
1319a093e273SMatthew Knepley   Mat            B = F;
1320ab235cb6SHong Zhang   Mat_Plapack    *lu;
1321ab235cb6SHong Zhang   PetscErrorCode ierr;
1322d0f46423SBarry Smith   PetscInt       M=A->rmap->N;
1323ab235cb6SHong Zhang   MPI_Comm       comm=((PetscObject)A)->comm,comm_2d;
1324ab235cb6SHong Zhang   PetscMPIInt    size;
1325ab235cb6SHong Zhang   PetscInt       ierror;
1326ab235cb6SHong Zhang 
1327ab235cb6SHong Zhang   PetscFunctionBegin;
1328ab235cb6SHong Zhang   lu = (Mat_Plapack*)(B->spptr);
1329ab235cb6SHong Zhang 
1330ab235cb6SHong Zhang   /* Set default Plapack parameters */
1331ab235cb6SHong Zhang   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
1332ab235cb6SHong Zhang   lu->nprows = 1; lu->npcols = size;
1333ab235cb6SHong Zhang   ierror = 0;
1334ab235cb6SHong Zhang   lu->nb     = M/size;
1335ab235cb6SHong Zhang   if (M - lu->nb*size) lu->nb++; /* without cyclic distribution */
1336ab235cb6SHong Zhang 
1337ab235cb6SHong Zhang   /* Set runtime options */
1338ab235cb6SHong Zhang   ierr = PetscOptionsBegin(((PetscObject)A)->comm,((PetscObject)A)->prefix,"PLAPACK Options","Mat");CHKERRQ(ierr);
1339ab235cb6SHong Zhang   ierr = PetscOptionsInt("-mat_plapack_nprows","row dimension of 2D processor mesh","None",lu->nprows,&lu->nprows,PETSC_NULL);CHKERRQ(ierr);
1340ab235cb6SHong Zhang   ierr = PetscOptionsInt("-mat_plapack_npcols","column dimension of 2D processor mesh","None",lu->npcols,&lu->npcols,PETSC_NULL);CHKERRQ(ierr);
1341ab235cb6SHong Zhang 
1342ab235cb6SHong Zhang   ierr = PetscOptionsInt("-mat_plapack_nb","block size of template vector","None",lu->nb,&lu->nb,PETSC_NULL);CHKERRQ(ierr);
1343ab235cb6SHong Zhang   ierr = PetscOptionsInt("-mat_plapack_ckerror","error checking flag","None",ierror,&ierror,PETSC_NULL);CHKERRQ(ierr);
1344ab235cb6SHong Zhang   if (ierror){
1345ab235cb6SHong Zhang     PLA_Set_error_checking(ierror,PETSC_TRUE,PETSC_TRUE,PETSC_FALSE );
1346ab235cb6SHong Zhang   } else {
1347ab235cb6SHong Zhang     PLA_Set_error_checking(ierror,PETSC_FALSE,PETSC_FALSE,PETSC_FALSE );
1348ab235cb6SHong Zhang   }
1349ab235cb6SHong Zhang   lu->ierror = ierror;
1350ab235cb6SHong Zhang 
1351ab235cb6SHong Zhang   lu->nb_alg = 0;
1352ab235cb6SHong Zhang   ierr = PetscOptionsInt("-mat_plapack_nb_alg","algorithmic block size","None",lu->nb_alg,&lu->nb_alg,PETSC_NULL);CHKERRQ(ierr);
1353ab235cb6SHong Zhang   if (lu->nb_alg){
1354ab235cb6SHong Zhang     pla_Environ_set_nb_alg (PLA_OP_ALL_ALG,lu->nb_alg);
1355ab235cb6SHong Zhang   }
1356ab235cb6SHong Zhang   PetscOptionsEnd();
1357ab235cb6SHong Zhang 
1358ab235cb6SHong Zhang 
1359ab235cb6SHong Zhang   /* Create a 2D communicator */
1360ab235cb6SHong Zhang   PLA_Comm_1D_to_2D(comm,lu->nprows,lu->npcols,&comm_2d);
1361ab235cb6SHong Zhang   lu->comm_2d = comm_2d;
1362ab235cb6SHong Zhang 
1363ab235cb6SHong Zhang   /* Create object distribution template */
1364ab235cb6SHong Zhang   lu->templ = NULL;
1365ab235cb6SHong Zhang   PLA_Temp_create(lu->nb, 0, &lu->templ);
1366ab235cb6SHong Zhang 
1367ab235cb6SHong Zhang   /* Use suggested nb_alg if it is not provided by user */
1368ab235cb6SHong Zhang   if (lu->nb_alg == 0){
1369ab235cb6SHong Zhang     PLA_Environ_nb_alg(PLA_OP_PAN_PAN,lu->templ,&lu->nb_alg);
1370ab235cb6SHong Zhang     pla_Environ_set_nb_alg(PLA_OP_ALL_ALG,lu->nb_alg);
1371ab235cb6SHong Zhang   }
1372ab235cb6SHong Zhang 
1373ab235cb6SHong Zhang   /* Set the datatype */
1374ab235cb6SHong Zhang #if defined(PETSC_USE_COMPLEX)
1375ab235cb6SHong Zhang   lu->datatype = MPI_DOUBLE_COMPLEX;
1376ab235cb6SHong Zhang #else
1377ab235cb6SHong Zhang   lu->datatype = MPI_DOUBLE;
1378ab235cb6SHong Zhang #endif
1379ab235cb6SHong Zhang 
1380ab235cb6SHong Zhang   lu->pla_solved     = PETSC_FALSE; /* MatSolve_Plapack() is called yet */
1381ab235cb6SHong Zhang   lu->mstruct        = DIFFERENT_NONZERO_PATTERN;
1382ab235cb6SHong Zhang   lu->CleanUpPlapack = PETSC_TRUE;
1383ab235cb6SHong Zhang   PetscFunctionReturn(0);
1384ab235cb6SHong Zhang }
1385ab235cb6SHong Zhang 
1386b24902e0SBarry Smith /* Note the Petsc perm permutation is ignored */
13872fbe02b9SBarry Smith #undef __FUNCT__
13886c995c7dSHong Zhang #define __FUNCT__ "MatCholeskyFactorSymbolic_MPIDense"
13890481f469SBarry Smith PetscErrorCode MatCholeskyFactorSymbolic_MPIDense(Mat F,Mat A,IS perm,const MatFactorInfo *info)
139001b82886SBarry Smith {
139101b82886SBarry Smith   PetscErrorCode ierr;
1392b24902e0SBarry Smith   PetscTruth     issymmetric,set;
139301b82886SBarry Smith 
139401b82886SBarry Smith   PetscFunctionBegin;
1395b24902e0SBarry Smith   ierr = MatIsSymmetricKnown(A,&set,&issymmetric); CHKERRQ(ierr);
1396b24902e0SBarry Smith   if (!set || !issymmetric) SETERRQ(PETSC_ERR_USER,"Matrix must be set as MAT_SYMMETRIC for CholeskyFactor()");
1397719d5645SBarry Smith   ierr = MatFactorSymbolic_Plapack_Private(F,A,info);CHKERRQ(ierr);
1398719d5645SBarry Smith   F->ops->choleskyfactornumeric  = MatCholeskyFactorNumeric_MPIDense;
1399b24902e0SBarry Smith   PetscFunctionReturn(0);
140001b82886SBarry Smith }
140101b82886SBarry Smith 
1402b24902e0SBarry Smith /* Note the Petsc r and c permutations are ignored */
1403b24902e0SBarry Smith #undef __FUNCT__
14046c995c7dSHong Zhang #define __FUNCT__ "MatLUFactorSymbolic_MPIDense"
14050481f469SBarry Smith PetscErrorCode MatLUFactorSymbolic_MPIDense(Mat F,Mat A,IS r,IS c,const MatFactorInfo *info)
1406b24902e0SBarry Smith {
1407b24902e0SBarry Smith   PetscErrorCode ierr;
1408d0f46423SBarry Smith   PetscInt       M = A->rmap->N;
1409b24902e0SBarry Smith   Mat_Plapack    *lu;
141001b82886SBarry Smith 
1411b24902e0SBarry Smith   PetscFunctionBegin;
1412a093e273SMatthew Knepley   ierr = MatFactorSymbolic_Plapack_Private(F,A,info);CHKERRQ(ierr);
1413719d5645SBarry Smith   lu = (Mat_Plapack*)F->spptr;
1414b24902e0SBarry Smith   ierr = PLA_Mvector_create(MPI_INT,M,1,lu->templ,PLA_ALIGN_FIRST,&lu->pivots);CHKERRQ(ierr);
1415719d5645SBarry Smith   F->ops->lufactornumeric  = MatLUFactorNumeric_MPIDense;
141601b82886SBarry Smith   PetscFunctionReturn(0);
141701b82886SBarry Smith }
141801b82886SBarry Smith 
141901b82886SBarry Smith #undef __FUNCT__
142085bd4cefSHong Zhang #define __FUNCT__ "MatGetFactor_mpidense_petsc"
142185bd4cefSHong Zhang PetscErrorCode MatGetFactor_mpidense_petsc(Mat A,MatFactorType ftype,Mat *F)
142201b82886SBarry Smith {
142301b82886SBarry Smith   PetscErrorCode ierr;
14246c995c7dSHong Zhang   Mat_Plapack    *lu;
14256c995c7dSHong Zhang   PetscMPIInt    size;
142685bd4cefSHong Zhang   PetscInt       M=A->rmap->N;
142701b82886SBarry Smith 
142801b82886SBarry Smith   PetscFunctionBegin;
142901b82886SBarry Smith   /* Create the factorization matrix */
1430eae6fb2eSBarry Smith   ierr = MatCreate(((PetscObject)A)->comm,F);CHKERRQ(ierr);
1431d0f46423SBarry Smith   ierr = MatSetSizes(*F,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
1432eae6fb2eSBarry Smith   ierr = MatSetType(*F,((PetscObject)A)->type_name);CHKERRQ(ierr);
143385bd4cefSHong Zhang   ierr = PetscNewLog(*F,Mat_Plapack,&lu);CHKERRQ(ierr);
143485bd4cefSHong Zhang   (*F)->spptr = (void*)lu;
143501b82886SBarry Smith 
1436b24902e0SBarry Smith   /* Set default Plapack parameters */
14376c995c7dSHong Zhang   ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr);
1438b24902e0SBarry Smith   lu->nb     = M/size;
1439b24902e0SBarry Smith   if (M - lu->nb*size) lu->nb++; /* without cyclic distribution */
144001b82886SBarry Smith 
1441b24902e0SBarry Smith   /* Set runtime options */
1442b24902e0SBarry Smith   ierr = PetscOptionsBegin(((PetscObject)A)->comm,((PetscObject)A)->prefix,"PLAPACK Options","Mat");CHKERRQ(ierr);
1443b24902e0SBarry Smith     ierr = PetscOptionsInt("-mat_plapack_nb","block size of template vector","None",lu->nb,&lu->nb,PETSC_NULL);CHKERRQ(ierr);
1444b24902e0SBarry Smith   PetscOptionsEnd();
144501b82886SBarry Smith 
1446b24902e0SBarry Smith   /* Create object distribution template */
1447b24902e0SBarry Smith   lu->templ = NULL;
1448b24902e0SBarry Smith   ierr = PLA_Temp_create(lu->nb, 0, &lu->templ);CHKERRQ(ierr);
1449b24902e0SBarry Smith 
1450b24902e0SBarry Smith   /* Set the datatype */
1451b24902e0SBarry Smith #if defined(PETSC_USE_COMPLEX)
1452b24902e0SBarry Smith   lu->datatype = MPI_DOUBLE_COMPLEX;
1453b24902e0SBarry Smith #else
1454b24902e0SBarry Smith   lu->datatype = MPI_DOUBLE;
1455b24902e0SBarry Smith #endif
1456b24902e0SBarry Smith 
1457d0f46423SBarry Smith   ierr = PLA_Matrix_create(lu->datatype,M,A->cmap->N,lu->templ,PLA_ALIGN_FIRST,PLA_ALIGN_FIRST,&lu->A);CHKERRQ(ierr);
1458b24902e0SBarry Smith 
1459b24902e0SBarry Smith 
1460b24902e0SBarry Smith   lu->pla_solved     = PETSC_FALSE; /* MatSolve_Plapack() is called yet */
1461b24902e0SBarry Smith 
1462b24902e0SBarry Smith   if (ftype == MAT_FACTOR_LU) {
1463b24902e0SBarry Smith     (*F)->ops->lufactorsymbolic = MatLUFactorSymbolic_MPIDense;
1464b24902e0SBarry Smith   } else if (ftype == MAT_FACTOR_CHOLESKY) {
14656c995c7dSHong Zhang     (*F)->ops->choleskyfactorsymbolic = MatCholeskyFactorSymbolic_MPIDense;
1466b24902e0SBarry Smith   } else SETERRQ(PETSC_ERR_SUP,"No incomplete factorizations for dense matrices");
1467719d5645SBarry Smith   (*F)->factor = ftype;
146801b82886SBarry Smith   PetscFunctionReturn(0);
146901b82886SBarry Smith }
147001b82886SBarry Smith #endif
147101b82886SBarry Smith 
14728965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/
147309dc0095SBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIDense,
147409dc0095SBarry Smith        MatGetRow_MPIDense,
147509dc0095SBarry Smith        MatRestoreRow_MPIDense,
147609dc0095SBarry Smith        MatMult_MPIDense,
147797304618SKris Buschelman /* 4*/ MatMultAdd_MPIDense,
14787c922b88SBarry Smith        MatMultTranspose_MPIDense,
14797c922b88SBarry Smith        MatMultTransposeAdd_MPIDense,
14808965ea79SLois Curfman McInnes        0,
148109dc0095SBarry Smith        0,
148209dc0095SBarry Smith        0,
148397304618SKris Buschelman /*10*/ 0,
148409dc0095SBarry Smith        0,
148509dc0095SBarry Smith        0,
148609dc0095SBarry Smith        0,
148709dc0095SBarry Smith        MatTranspose_MPIDense,
148897304618SKris Buschelman /*15*/ MatGetInfo_MPIDense,
14896e4ee0c6SHong Zhang        MatEqual_MPIDense,
149009dc0095SBarry Smith        MatGetDiagonal_MPIDense,
14915b2fa520SLois Curfman McInnes        MatDiagonalScale_MPIDense,
149209dc0095SBarry Smith        MatNorm_MPIDense,
149397304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIDense,
149409dc0095SBarry Smith        MatAssemblyEnd_MPIDense,
149509dc0095SBarry Smith        0,
149609dc0095SBarry Smith        MatSetOption_MPIDense,
149709dc0095SBarry Smith        MatZeroEntries_MPIDense,
149897304618SKris Buschelman /*25*/ MatZeroRows_MPIDense,
1499919b68f7SBarry Smith        0,
150001b82886SBarry Smith        0,
150101b82886SBarry Smith        0,
150201b82886SBarry Smith        0,
150397304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPIDense,
1504273d9f13SBarry Smith        0,
150509dc0095SBarry Smith        0,
150609dc0095SBarry Smith        MatGetArray_MPIDense,
150709dc0095SBarry Smith        MatRestoreArray_MPIDense,
150897304618SKris Buschelman /*35*/ MatDuplicate_MPIDense,
150909dc0095SBarry Smith        0,
151009dc0095SBarry Smith        0,
151109dc0095SBarry Smith        0,
151209dc0095SBarry Smith        0,
151397304618SKris Buschelman /*40*/ 0,
15142ce60cd0SSatish Balay        MatGetSubMatrices_MPIDense,
151509dc0095SBarry Smith        0,
151609dc0095SBarry Smith        MatGetValues_MPIDense,
151709dc0095SBarry Smith        0,
151897304618SKris Buschelman /*45*/ 0,
151909dc0095SBarry Smith        MatScale_MPIDense,
152009dc0095SBarry Smith        0,
152109dc0095SBarry Smith        0,
152209dc0095SBarry Smith        0,
1523521d7252SBarry Smith /*50*/ 0,
152409dc0095SBarry Smith        0,
152509dc0095SBarry Smith        0,
152609dc0095SBarry Smith        0,
152709dc0095SBarry Smith        0,
152897304618SKris Buschelman /*55*/ 0,
152909dc0095SBarry Smith        0,
153009dc0095SBarry Smith        0,
153109dc0095SBarry Smith        0,
153209dc0095SBarry Smith        0,
153397304618SKris Buschelman /*60*/ MatGetSubMatrix_MPIDense,
1534b9b97703SBarry Smith        MatDestroy_MPIDense,
1535b9b97703SBarry Smith        MatView_MPIDense,
1536357abbc8SBarry Smith        0,
153797304618SKris Buschelman        0,
153897304618SKris Buschelman /*65*/ 0,
153997304618SKris Buschelman        0,
154097304618SKris Buschelman        0,
154197304618SKris Buschelman        0,
154297304618SKris Buschelman        0,
154397304618SKris Buschelman /*70*/ 0,
154497304618SKris Buschelman        0,
154597304618SKris Buschelman        0,
154697304618SKris Buschelman        0,
154797304618SKris Buschelman        0,
154897304618SKris Buschelman /*75*/ 0,
154997304618SKris Buschelman        0,
155097304618SKris Buschelman        0,
155197304618SKris Buschelman        0,
155297304618SKris Buschelman        0,
155397304618SKris Buschelman /*80*/ 0,
155497304618SKris Buschelman        0,
155597304618SKris Buschelman        0,
155697304618SKris Buschelman        0,
1557865e5f61SKris Buschelman /*84*/ MatLoad_MPIDense,
1558865e5f61SKris Buschelman        0,
1559865e5f61SKris Buschelman        0,
1560865e5f61SKris Buschelman        0,
1561865e5f61SKris Buschelman        0,
1562865e5f61SKris Buschelman        0,
15632fbe02b9SBarry Smith /*90*/
15642fbe02b9SBarry Smith #if defined(PETSC_HAVE_PLAPACK)
15652fbe02b9SBarry Smith        MatMatMult_MPIDense_MPIDense,
15664ae313f4SHong Zhang        MatMatMultSymbolic_MPIDense_MPIDense,
15672fbe02b9SBarry Smith        MatMatMultNumeric_MPIDense_MPIDense,
15682fbe02b9SBarry Smith #else
1569865e5f61SKris Buschelman        0,
1570865e5f61SKris Buschelman        0,
1571865e5f61SKris Buschelman        0,
15722fbe02b9SBarry Smith #endif
15732fbe02b9SBarry Smith        0,
1574865e5f61SKris Buschelman /*95*/ 0,
1575865e5f61SKris Buschelman        0,
1576865e5f61SKris Buschelman        0,
1577865e5f61SKris Buschelman        0};
15788965ea79SLois Curfman McInnes 
1579273d9f13SBarry Smith EXTERN_C_BEGIN
15804a2ae208SSatish Balay #undef __FUNCT__
1581a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIDenseSetPreallocation_MPIDense"
1582be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIDenseSetPreallocation_MPIDense(Mat mat,PetscScalar *data)
1583a23d5eceSKris Buschelman {
1584a23d5eceSKris Buschelman   Mat_MPIDense   *a;
1585dfbe8321SBarry Smith   PetscErrorCode ierr;
1586a23d5eceSKris Buschelman 
1587a23d5eceSKris Buschelman   PetscFunctionBegin;
1588a23d5eceSKris Buschelman   mat->preallocated = PETSC_TRUE;
1589a23d5eceSKris Buschelman   /* Note:  For now, when data is specified above, this assumes the user correctly
1590a23d5eceSKris Buschelman    allocates the local dense storage space.  We should add error checking. */
1591a23d5eceSKris Buschelman 
1592a23d5eceSKris Buschelman   a    = (Mat_MPIDense*)mat->data;
1593f69a0ea3SMatthew Knepley   ierr = MatCreate(PETSC_COMM_SELF,&a->A);CHKERRQ(ierr);
1594d0f46423SBarry Smith   ierr = MatSetSizes(a->A,mat->rmap->n,mat->cmap->N,mat->rmap->n,mat->cmap->N);CHKERRQ(ierr);
15955c5985e7SKris Buschelman   ierr = MatSetType(a->A,MATSEQDENSE);CHKERRQ(ierr);
15965c5985e7SKris Buschelman   ierr = MatSeqDenseSetPreallocation(a->A,data);CHKERRQ(ierr);
159752e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr);
1598a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1599a23d5eceSKris Buschelman }
1600a23d5eceSKris Buschelman EXTERN_C_END
1601a23d5eceSKris Buschelman 
16020bad9183SKris Buschelman /*MC
1603fafad747SKris Buschelman    MATMPIDENSE - MATMPIDENSE = "mpidense" - A matrix type to be used for distributed dense matrices.
16040bad9183SKris Buschelman 
16050bad9183SKris Buschelman    Options Database Keys:
16060bad9183SKris Buschelman . -mat_type mpidense - sets the matrix type to "mpidense" during a call to MatSetFromOptions()
16070bad9183SKris Buschelman 
16080bad9183SKris Buschelman   Level: beginner
16090bad9183SKris Buschelman 
16107878bbefSBarry Smith   MATMPIDENSE matrices may use direct solvers (LU, Cholesky, and QR)
16117878bbefSBarry Smith   for parallel dense matrices via the external package PLAPACK, if PLAPACK is installed
16127878bbefSBarry Smith   (run config/configure.py with the option --download-plapack)
16137878bbefSBarry Smith 
16147878bbefSBarry Smith 
16157878bbefSBarry Smith   Options Database Keys:
16167878bbefSBarry Smith . -mat_plapack_nprows <n> - number of rows in processor partition
16177878bbefSBarry Smith . -mat_plapack_npcols <n> - number of columns in processor partition
16187878bbefSBarry Smith . -mat_plapack_nb <n> - block size of template vector
16197878bbefSBarry Smith . -mat_plapack_nb_alg <n> - algorithmic block size
16207878bbefSBarry Smith - -mat_plapack_ckerror <n> - error checking flag
16217878bbefSBarry Smith 
16227878bbefSBarry Smith .seealso: MatCreateMPIDense(), MATDENSE, MATSEQDENSE
16230bad9183SKris Buschelman M*/
16240bad9183SKris Buschelman 
1625a23d5eceSKris Buschelman EXTERN_C_BEGIN
1626a23d5eceSKris Buschelman #undef __FUNCT__
16274a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIDense"
1628be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPIDense(Mat mat)
1629273d9f13SBarry Smith {
1630273d9f13SBarry Smith   Mat_MPIDense   *a;
1631dfbe8321SBarry Smith   PetscErrorCode ierr;
1632273d9f13SBarry Smith 
1633273d9f13SBarry Smith   PetscFunctionBegin;
163438f2d2fdSLisandro Dalcin   ierr              = PetscNewLog(mat,Mat_MPIDense,&a);CHKERRQ(ierr);
1635b0a32e0cSBarry Smith   mat->data         = (void*)a;
1636273d9f13SBarry Smith   ierr              = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1637273d9f13SBarry Smith   mat->mapping      = 0;
1638273d9f13SBarry Smith 
1639273d9f13SBarry Smith   mat->insertmode = NOT_SET_VALUES;
16407adad957SLisandro Dalcin   ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&a->rank);CHKERRQ(ierr);
16417adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)mat)->comm,&a->size);CHKERRQ(ierr);
1642273d9f13SBarry Smith 
1643d0f46423SBarry Smith   mat->rmap->bs = mat->cmap->bs = 1;
1644d0f46423SBarry Smith   ierr = PetscMapSetUp(mat->rmap);CHKERRQ(ierr);
1645d0f46423SBarry Smith   ierr = PetscMapSetUp(mat->cmap);CHKERRQ(ierr);
1646d0f46423SBarry Smith   a->nvec = mat->cmap->n;
1647273d9f13SBarry Smith 
1648273d9f13SBarry Smith   /* build cache for off array entries formed */
1649273d9f13SBarry Smith   a->donotstash = PETSC_FALSE;
16507adad957SLisandro Dalcin   ierr = MatStashCreate_Private(((PetscObject)mat)->comm,1,&mat->stash);CHKERRQ(ierr);
1651273d9f13SBarry Smith 
1652273d9f13SBarry Smith   /* stuff used for matrix vector multiply */
1653273d9f13SBarry Smith   a->lvec        = 0;
1654273d9f13SBarry Smith   a->Mvctx       = 0;
1655273d9f13SBarry Smith   a->roworiented = PETSC_TRUE;
1656273d9f13SBarry Smith 
1657273d9f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatGetDiagonalBlock_C",
1658273d9f13SBarry Smith                                      "MatGetDiagonalBlock_MPIDense",
1659273d9f13SBarry Smith                                      MatGetDiagonalBlock_MPIDense);CHKERRQ(ierr);
1660a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMPIDenseSetPreallocation_C",
1661a23d5eceSKris Buschelman                                      "MatMPIDenseSetPreallocation_MPIDense",
1662a23d5eceSKris Buschelman                                      MatMPIDenseSetPreallocation_MPIDense);CHKERRQ(ierr);
16634ae313f4SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMatMult_mpiaij_mpidense_C",
16644ae313f4SHong Zhang                                      "MatMatMult_MPIAIJ_MPIDense",
16654ae313f4SHong Zhang                                       MatMatMult_MPIAIJ_MPIDense);CHKERRQ(ierr);
16664ae313f4SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C",
16674ae313f4SHong Zhang                                      "MatMatMultSymbolic_MPIAIJ_MPIDense",
16684ae313f4SHong Zhang                                       MatMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr);
16694ae313f4SHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C",
16704ae313f4SHong Zhang                                      "MatMatMultNumeric_MPIAIJ_MPIDense",
16714ae313f4SHong Zhang                                       MatMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr);
16727878bbefSBarry Smith #if defined(PETSC_HAVE_PLAPACK)
167385bd4cefSHong Zhang   ierr = PetscObjectComposeFunctionDynamic((PetscObject)mat,"MatGetFactor_mpidense_petsc_C",
167485bd4cefSHong Zhang                                      "MatGetFactor_mpidense_petsc",
167585bd4cefSHong Zhang                                       MatGetFactor_mpidense_petsc);CHKERRQ(ierr);
1676db4efbfdSBarry Smith #if defined(PETSC_HAVE_PLAPACK)
1677db4efbfdSBarry Smith   ierr = PetscPLAPACKInitializePackage(((PetscObject)mat)->comm);CHKERRQ(ierr);
1678db4efbfdSBarry Smith #endif
1679db4efbfdSBarry Smith 
16807878bbefSBarry Smith #endif
168138aed534SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)mat,MATMPIDENSE);CHKERRQ(ierr);
168201b82886SBarry Smith 
1683273d9f13SBarry Smith   PetscFunctionReturn(0);
1684273d9f13SBarry Smith }
1685273d9f13SBarry Smith EXTERN_C_END
1686273d9f13SBarry Smith 
1687209238afSKris Buschelman /*MC
1688002d173eSKris Buschelman    MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices.
1689209238afSKris Buschelman 
1690209238afSKris Buschelman    This matrix type is identical to MATSEQDENSE when constructed with a single process communicator,
1691209238afSKris Buschelman    and MATMPIDENSE otherwise.
1692209238afSKris Buschelman 
1693209238afSKris Buschelman    Options Database Keys:
1694209238afSKris Buschelman . -mat_type dense - sets the matrix type to "dense" during a call to MatSetFromOptions()
1695209238afSKris Buschelman 
1696209238afSKris Buschelman   Level: beginner
1697209238afSKris Buschelman 
169801b82886SBarry Smith 
1699209238afSKris Buschelman .seealso: MatCreateMPIDense,MATSEQDENSE,MATMPIDENSE
1700209238afSKris Buschelman M*/
1701209238afSKris Buschelman 
1702209238afSKris Buschelman EXTERN_C_BEGIN
1703209238afSKris Buschelman #undef __FUNCT__
1704209238afSKris Buschelman #define __FUNCT__ "MatCreate_Dense"
1705be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_Dense(Mat A)
1706dfbe8321SBarry Smith {
17076849ba73SBarry Smith   PetscErrorCode ierr;
170813f74950SBarry Smith   PetscMPIInt    size;
1709209238afSKris Buschelman 
1710209238afSKris Buschelman   PetscFunctionBegin;
17117adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr);
1712209238afSKris Buschelman   if (size == 1) {
1713209238afSKris Buschelman     ierr = MatSetType(A,MATSEQDENSE);CHKERRQ(ierr);
1714209238afSKris Buschelman   } else {
1715209238afSKris Buschelman     ierr = MatSetType(A,MATMPIDENSE);CHKERRQ(ierr);
1716209238afSKris Buschelman   }
1717209238afSKris Buschelman   PetscFunctionReturn(0);
1718209238afSKris Buschelman }
1719209238afSKris Buschelman EXTERN_C_END
1720209238afSKris Buschelman 
17214a2ae208SSatish Balay #undef __FUNCT__
17224a2ae208SSatish Balay #define __FUNCT__ "MatMPIDenseSetPreallocation"
1723273d9f13SBarry Smith /*@C
1724273d9f13SBarry Smith    MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries
1725273d9f13SBarry Smith 
1726273d9f13SBarry Smith    Not collective
1727273d9f13SBarry Smith 
1728273d9f13SBarry Smith    Input Parameters:
1729273d9f13SBarry Smith .  A - the matrix
1730273d9f13SBarry Smith -  data - optional location of matrix data.  Set data=PETSC_NULL for PETSc
1731273d9f13SBarry Smith    to control all matrix memory allocation.
1732273d9f13SBarry Smith 
1733273d9f13SBarry Smith    Notes:
1734273d9f13SBarry Smith    The dense format is fully compatible with standard Fortran 77
1735273d9f13SBarry Smith    storage by columns.
1736273d9f13SBarry Smith 
1737273d9f13SBarry Smith    The data input variable is intended primarily for Fortran programmers
1738273d9f13SBarry Smith    who wish to allocate their own matrix memory space.  Most users should
1739273d9f13SBarry Smith    set data=PETSC_NULL.
1740273d9f13SBarry Smith 
1741273d9f13SBarry Smith    Level: intermediate
1742273d9f13SBarry Smith 
1743273d9f13SBarry Smith .keywords: matrix,dense, parallel
1744273d9f13SBarry Smith 
1745273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues()
1746273d9f13SBarry Smith @*/
1747be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIDenseSetPreallocation(Mat mat,PetscScalar *data)
1748273d9f13SBarry Smith {
1749dfbe8321SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscScalar *);
1750273d9f13SBarry Smith 
1751273d9f13SBarry Smith   PetscFunctionBegin;
1752565567f0SKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
1753a23d5eceSKris Buschelman   if (f) {
1754a23d5eceSKris Buschelman     ierr = (*f)(mat,data);CHKERRQ(ierr);
1755a23d5eceSKris Buschelman   }
1756273d9f13SBarry Smith   PetscFunctionReturn(0);
1757273d9f13SBarry Smith }
1758273d9f13SBarry Smith 
17594a2ae208SSatish Balay #undef __FUNCT__
17604a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPIDense"
17618965ea79SLois Curfman McInnes /*@C
176239ddd567SLois Curfman McInnes    MatCreateMPIDense - Creates a sparse parallel matrix in dense format.
17638965ea79SLois Curfman McInnes 
1764db81eaa0SLois Curfman McInnes    Collective on MPI_Comm
1765db81eaa0SLois Curfman McInnes 
17668965ea79SLois Curfman McInnes    Input Parameters:
1767db81eaa0SLois Curfman McInnes +  comm - MPI communicator
17688965ea79SLois Curfman McInnes .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
1769db81eaa0SLois Curfman McInnes .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
17708965ea79SLois Curfman McInnes .  M - number of global rows (or PETSC_DECIDE to have calculated if m is given)
1771db81eaa0SLois Curfman McInnes .  N - number of global columns (or PETSC_DECIDE to have calculated if n is given)
17727f5ff6fdSBarry Smith -  data - optional location of matrix data.  Set data=PETSC_NULL (PETSC_NULL_SCALAR for Fortran users) for PETSc
1773dfc5480cSLois Curfman McInnes    to control all matrix memory allocation.
17748965ea79SLois Curfman McInnes 
17758965ea79SLois Curfman McInnes    Output Parameter:
1776477f1c0bSLois Curfman McInnes .  A - the matrix
17778965ea79SLois Curfman McInnes 
1778b259b22eSLois Curfman McInnes    Notes:
177939ddd567SLois Curfman McInnes    The dense format is fully compatible with standard Fortran 77
178039ddd567SLois Curfman McInnes    storage by columns.
17818965ea79SLois Curfman McInnes 
178218f449edSLois Curfman McInnes    The data input variable is intended primarily for Fortran programmers
178318f449edSLois Curfman McInnes    who wish to allocate their own matrix memory space.  Most users should
17847f5ff6fdSBarry Smith    set data=PETSC_NULL (PETSC_NULL_SCALAR for Fortran users).
178518f449edSLois Curfman McInnes 
17868965ea79SLois Curfman McInnes    The user MUST specify either the local or global matrix dimensions
17878965ea79SLois Curfman McInnes    (possibly both).
17888965ea79SLois Curfman McInnes 
1789027ccd11SLois Curfman McInnes    Level: intermediate
1790027ccd11SLois Curfman McInnes 
179139ddd567SLois Curfman McInnes .keywords: matrix,dense, parallel
17928965ea79SLois Curfman McInnes 
179339ddd567SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues()
17948965ea79SLois Curfman McInnes @*/
1795be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPIDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A)
17968965ea79SLois Curfman McInnes {
17976849ba73SBarry Smith   PetscErrorCode ierr;
179813f74950SBarry Smith   PetscMPIInt    size;
17998965ea79SLois Curfman McInnes 
18003a40ed3dSBarry Smith   PetscFunctionBegin;
1801f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
1802f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
1803273d9f13SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
1804273d9f13SBarry Smith   if (size > 1) {
1805273d9f13SBarry Smith     ierr = MatSetType(*A,MATMPIDENSE);CHKERRQ(ierr);
1806273d9f13SBarry Smith     ierr = MatMPIDenseSetPreallocation(*A,data);CHKERRQ(ierr);
1807273d9f13SBarry Smith   } else {
1808273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr);
1809273d9f13SBarry Smith     ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr);
18108c469469SLois Curfman McInnes   }
18113a40ed3dSBarry Smith   PetscFunctionReturn(0);
18128965ea79SLois Curfman McInnes }
18138965ea79SLois Curfman McInnes 
18144a2ae208SSatish Balay #undef __FUNCT__
18154a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIDense"
18166849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat)
18178965ea79SLois Curfman McInnes {
18188965ea79SLois Curfman McInnes   Mat            mat;
18193501a2bdSLois Curfman McInnes   Mat_MPIDense   *a,*oldmat = (Mat_MPIDense*)A->data;
1820dfbe8321SBarry Smith   PetscErrorCode ierr;
18218965ea79SLois Curfman McInnes 
18223a40ed3dSBarry Smith   PetscFunctionBegin;
18238965ea79SLois Curfman McInnes   *newmat       = 0;
18247adad957SLisandro Dalcin   ierr = MatCreate(((PetscObject)A)->comm,&mat);CHKERRQ(ierr);
1825d0f46423SBarry Smith   ierr = MatSetSizes(mat,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
18267adad957SLisandro Dalcin   ierr = MatSetType(mat,((PetscObject)A)->type_name);CHKERRQ(ierr);
1827834f8fabSBarry Smith   a                 = (Mat_MPIDense*)mat->data;
1828e04c1aa4SHong Zhang   ierr              = PetscMemcpy(mat->ops,A->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
18293501a2bdSLois Curfman McInnes   mat->factor       = A->factor;
1830c456f294SBarry Smith   mat->assembled    = PETSC_TRUE;
1831273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
18328965ea79SLois Curfman McInnes 
1833d0f46423SBarry Smith   mat->rmap->rstart     = A->rmap->rstart;
1834d0f46423SBarry Smith   mat->rmap->rend       = A->rmap->rend;
18358965ea79SLois Curfman McInnes   a->size              = oldmat->size;
18368965ea79SLois Curfman McInnes   a->rank              = oldmat->rank;
1837e0fa3b82SLois Curfman McInnes   mat->insertmode      = NOT_SET_VALUES;
1838b9b97703SBarry Smith   a->nvec              = oldmat->nvec;
18393782ba37SSatish Balay   a->donotstash        = oldmat->donotstash;
1840e04c1aa4SHong Zhang 
1841d0f46423SBarry Smith   ierr = PetscMemcpy(mat->rmap->range,A->rmap->range,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr);
1842d0f46423SBarry Smith   ierr = PetscMemcpy(mat->cmap->range,A->cmap->range,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr);
18437adad957SLisandro Dalcin   ierr = MatStashCreate_Private(((PetscObject)A)->comm,1,&mat->stash);CHKERRQ(ierr);
18448965ea79SLois Curfman McInnes 
1845329f5518SBarry Smith   ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr);
18465609ef8eSBarry Smith   ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
184752e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr);
184801b82886SBarry Smith 
18498965ea79SLois Curfman McInnes   *newmat = mat;
18503a40ed3dSBarry Smith   PetscFunctionReturn(0);
18518965ea79SLois Curfman McInnes }
18528965ea79SLois Curfman McInnes 
1853e090d566SSatish Balay #include "petscsys.h"
18548965ea79SLois Curfman McInnes 
18554a2ae208SSatish Balay #undef __FUNCT__
18564a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIDense_DenseInFile"
1857a313700dSBarry Smith PetscErrorCode MatLoad_MPIDense_DenseInFile(MPI_Comm comm,PetscInt fd,PetscInt M,PetscInt N, const MatType type,Mat *newmat)
185890ace30eSBarry Smith {
18596849ba73SBarry Smith   PetscErrorCode ierr;
186032dcc486SBarry Smith   PetscMPIInt    rank,size;
186113f74950SBarry Smith   PetscInt       *rowners,i,m,nz,j;
186287828ca2SBarry Smith   PetscScalar    *array,*vals,*vals_ptr;
186390ace30eSBarry Smith   MPI_Status     status;
186490ace30eSBarry Smith 
18653a40ed3dSBarry Smith   PetscFunctionBegin;
1866d132466eSBarry Smith   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
1867d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
186890ace30eSBarry Smith 
186990ace30eSBarry Smith   /* determine ownership of all rows */
187090ace30eSBarry Smith   m          = M/size + ((M % size) > rank);
187113f74950SBarry Smith   ierr       = PetscMalloc((size+2)*sizeof(PetscInt),&rowners);CHKERRQ(ierr);
187213f74950SBarry Smith   ierr       = MPI_Allgather(&m,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr);
187390ace30eSBarry Smith   rowners[0] = 0;
187490ace30eSBarry Smith   for (i=2; i<=size; i++) {
187590ace30eSBarry Smith     rowners[i] += rowners[i-1];
187690ace30eSBarry Smith   }
187790ace30eSBarry Smith 
1878f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,newmat);CHKERRQ(ierr);
1879f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*newmat,m,PETSC_DECIDE,M,N);CHKERRQ(ierr);
1880be5d1d56SKris Buschelman   ierr = MatSetType(*newmat,type);CHKERRQ(ierr);
1881878740d9SKris Buschelman   ierr = MatMPIDenseSetPreallocation(*newmat,PETSC_NULL);CHKERRQ(ierr);
188290ace30eSBarry Smith   ierr = MatGetArray(*newmat,&array);CHKERRQ(ierr);
188390ace30eSBarry Smith 
188490ace30eSBarry Smith   if (!rank) {
188587828ca2SBarry Smith     ierr = PetscMalloc(m*N*sizeof(PetscScalar),&vals);CHKERRQ(ierr);
188690ace30eSBarry Smith 
188790ace30eSBarry Smith     /* read in my part of the matrix numerical values  */
18880752156aSBarry Smith     ierr = PetscBinaryRead(fd,vals,m*N,PETSC_SCALAR);CHKERRQ(ierr);
188990ace30eSBarry Smith 
189090ace30eSBarry Smith     /* insert into matrix-by row (this is why cannot directly read into array */
189190ace30eSBarry Smith     vals_ptr = vals;
189290ace30eSBarry Smith     for (i=0; i<m; i++) {
189390ace30eSBarry Smith       for (j=0; j<N; j++) {
189490ace30eSBarry Smith         array[i + j*m] = *vals_ptr++;
189590ace30eSBarry Smith       }
189690ace30eSBarry Smith     }
189790ace30eSBarry Smith 
189890ace30eSBarry Smith     /* read in other processors and ship out */
189990ace30eSBarry Smith     for (i=1; i<size; i++) {
190090ace30eSBarry Smith       nz   = (rowners[i+1] - rowners[i])*N;
19010752156aSBarry Smith       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
19027adad957SLisandro Dalcin       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)(*newmat))->tag,comm);CHKERRQ(ierr);
190390ace30eSBarry Smith     }
19043a40ed3dSBarry Smith   } else {
190590ace30eSBarry Smith     /* receive numeric values */
190687828ca2SBarry Smith     ierr = PetscMalloc(m*N*sizeof(PetscScalar),&vals);CHKERRQ(ierr);
190790ace30eSBarry Smith 
190890ace30eSBarry Smith     /* receive message of values*/
19097adad957SLisandro Dalcin     ierr = MPI_Recv(vals,m*N,MPIU_SCALAR,0,((PetscObject)(*newmat))->tag,comm,&status);CHKERRQ(ierr);
191090ace30eSBarry Smith 
191190ace30eSBarry Smith     /* insert into matrix-by row (this is why cannot directly read into array */
191290ace30eSBarry Smith     vals_ptr = vals;
191390ace30eSBarry Smith     for (i=0; i<m; i++) {
191490ace30eSBarry Smith       for (j=0; j<N; j++) {
191590ace30eSBarry Smith         array[i + j*m] = *vals_ptr++;
191690ace30eSBarry Smith       }
191790ace30eSBarry Smith     }
191890ace30eSBarry Smith   }
1919606d414cSSatish Balay   ierr = PetscFree(rowners);CHKERRQ(ierr);
1920606d414cSSatish Balay   ierr = PetscFree(vals);CHKERRQ(ierr);
19216d4a8577SBarry Smith   ierr = MatAssemblyBegin(*newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
19226d4a8577SBarry Smith   ierr = MatAssemblyEnd(*newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
19233a40ed3dSBarry Smith   PetscFunctionReturn(0);
192490ace30eSBarry Smith }
192590ace30eSBarry Smith 
19264a2ae208SSatish Balay #undef __FUNCT__
19274a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIDense"
1928a313700dSBarry Smith PetscErrorCode MatLoad_MPIDense(PetscViewer viewer,const MatType type,Mat *newmat)
19298965ea79SLois Curfman McInnes {
19308965ea79SLois Curfman McInnes   Mat            A;
193187828ca2SBarry Smith   PetscScalar    *vals,*svals;
193219bcc07fSBarry Smith   MPI_Comm       comm = ((PetscObject)viewer)->comm;
19338965ea79SLois Curfman McInnes   MPI_Status     status;
193413f74950SBarry Smith   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag,*rowners,*sndcounts,m,maxnz;
193513f74950SBarry Smith   PetscInt       header[4],*rowlengths = 0,M,N,*cols;
193613f74950SBarry Smith   PetscInt       *ourlens,*procsnz = 0,*offlens,jj,*mycols,*smycols;
193713f74950SBarry Smith   PetscInt       i,nz,j,rstart,rend;
193813f74950SBarry Smith   int            fd;
19396849ba73SBarry Smith   PetscErrorCode ierr;
19408965ea79SLois Curfman McInnes 
19413a40ed3dSBarry Smith   PetscFunctionBegin;
1942d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
1943d132466eSBarry Smith   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
19448965ea79SLois Curfman McInnes   if (!rank) {
1945b0a32e0cSBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
19460752156aSBarry Smith     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
1947552e946dSBarry Smith     if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
19488965ea79SLois Curfman McInnes   }
19498965ea79SLois Curfman McInnes 
195013f74950SBarry Smith   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
195190ace30eSBarry Smith   M = header[1]; N = header[2]; nz = header[3];
195290ace30eSBarry Smith 
195390ace30eSBarry Smith   /*
195490ace30eSBarry Smith        Handle case where matrix is stored on disk as a dense matrix
195590ace30eSBarry Smith   */
195690ace30eSBarry Smith   if (nz == MATRIX_BINARY_FORMAT_DENSE) {
1957be5d1d56SKris Buschelman     ierr = MatLoad_MPIDense_DenseInFile(comm,fd,M,N,type,newmat);CHKERRQ(ierr);
19583a40ed3dSBarry Smith     PetscFunctionReturn(0);
195990ace30eSBarry Smith   }
196090ace30eSBarry Smith 
19618965ea79SLois Curfman McInnes   /* determine ownership of all rows */
1962e44c0bd4SBarry Smith   m          = PetscMPIIntCast(M/size + ((M % size) > rank));
1963e44c0bd4SBarry Smith   ierr       = PetscMalloc((size+2)*sizeof(PetscMPIInt),&rowners);CHKERRQ(ierr);
1964ca161407SBarry Smith   ierr       = MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
19658965ea79SLois Curfman McInnes   rowners[0] = 0;
19668965ea79SLois Curfman McInnes   for (i=2; i<=size; i++) {
19678965ea79SLois Curfman McInnes     rowners[i] += rowners[i-1];
19688965ea79SLois Curfman McInnes   }
19698965ea79SLois Curfman McInnes   rstart = rowners[rank];
19708965ea79SLois Curfman McInnes   rend   = rowners[rank+1];
19718965ea79SLois Curfman McInnes 
19728965ea79SLois Curfman McInnes   /* distribute row lengths to all processors */
197313f74950SBarry Smith   ierr    = PetscMalloc(2*(rend-rstart+1)*sizeof(PetscInt),&ourlens);CHKERRQ(ierr);
19748965ea79SLois Curfman McInnes   offlens = ourlens + (rend-rstart);
19758965ea79SLois Curfman McInnes   if (!rank) {
197613f74950SBarry Smith     ierr = PetscMalloc(M*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
19770752156aSBarry Smith     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
197813f74950SBarry Smith     ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr);
19798965ea79SLois Curfman McInnes     for (i=0; i<size; i++) sndcounts[i] = rowners[i+1] - rowners[i];
19801466f1e1SBarry Smith     ierr = MPI_Scatterv(rowlengths,sndcounts,rowners,MPIU_INT,ourlens,rend-rstart,MPIU_INT,0,comm);CHKERRQ(ierr);
1981606d414cSSatish Balay     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
1982ca161407SBarry Smith   } else {
19831466f1e1SBarry Smith     ierr = MPI_Scatterv(0,0,0,MPIU_INT,ourlens,rend-rstart,MPIU_INT,0,comm);CHKERRQ(ierr);
19848965ea79SLois Curfman McInnes   }
19858965ea79SLois Curfman McInnes 
19868965ea79SLois Curfman McInnes   if (!rank) {
19878965ea79SLois Curfman McInnes     /* calculate the number of nonzeros on each processor */
198813f74950SBarry Smith     ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr);
198913f74950SBarry Smith     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
19908965ea79SLois Curfman McInnes     for (i=0; i<size; i++) {
19918965ea79SLois Curfman McInnes       for (j=rowners[i]; j< rowners[i+1]; j++) {
19928965ea79SLois Curfman McInnes         procsnz[i] += rowlengths[j];
19938965ea79SLois Curfman McInnes       }
19948965ea79SLois Curfman McInnes     }
1995606d414cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
19968965ea79SLois Curfman McInnes 
19978965ea79SLois Curfman McInnes     /* determine max buffer needed and allocate it */
19988965ea79SLois Curfman McInnes     maxnz = 0;
19998965ea79SLois Curfman McInnes     for (i=0; i<size; i++) {
20000452661fSBarry Smith       maxnz = PetscMax(maxnz,procsnz[i]);
20018965ea79SLois Curfman McInnes     }
200213f74950SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr);
20038965ea79SLois Curfman McInnes 
20048965ea79SLois Curfman McInnes     /* read in my part of the matrix column indices  */
20058965ea79SLois Curfman McInnes     nz = procsnz[0];
200613f74950SBarry Smith     ierr = PetscMalloc(nz*sizeof(PetscInt),&mycols);CHKERRQ(ierr);
20070752156aSBarry Smith     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
20088965ea79SLois Curfman McInnes 
20098965ea79SLois Curfman McInnes     /* read in every one elses and ship off */
20108965ea79SLois Curfman McInnes     for (i=1; i<size; i++) {
20118965ea79SLois Curfman McInnes       nz   = procsnz[i];
20120752156aSBarry Smith       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
201313f74950SBarry Smith       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
20148965ea79SLois Curfman McInnes     }
2015606d414cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
20163a40ed3dSBarry Smith   } else {
20178965ea79SLois Curfman McInnes     /* determine buffer space needed for message */
20188965ea79SLois Curfman McInnes     nz = 0;
20198965ea79SLois Curfman McInnes     for (i=0; i<m; i++) {
20208965ea79SLois Curfman McInnes       nz += ourlens[i];
20218965ea79SLois Curfman McInnes     }
202213f74950SBarry Smith     ierr = PetscMalloc((nz+1)*sizeof(PetscInt),&mycols);CHKERRQ(ierr);
20238965ea79SLois Curfman McInnes 
20248965ea79SLois Curfman McInnes     /* receive message of column indices*/
202513f74950SBarry Smith     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
202613f74950SBarry Smith     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
202729bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
20288965ea79SLois Curfman McInnes   }
20298965ea79SLois Curfman McInnes 
20308965ea79SLois Curfman McInnes   /* loop over local rows, determining number of off diagonal entries */
203113f74950SBarry Smith   ierr = PetscMemzero(offlens,m*sizeof(PetscInt));CHKERRQ(ierr);
20328965ea79SLois Curfman McInnes   jj = 0;
20338965ea79SLois Curfman McInnes   for (i=0; i<m; i++) {
20348965ea79SLois Curfman McInnes     for (j=0; j<ourlens[i]; j++) {
20358965ea79SLois Curfman McInnes       if (mycols[jj] < rstart || mycols[jj] >= rend) offlens[i]++;
20368965ea79SLois Curfman McInnes       jj++;
20378965ea79SLois Curfman McInnes     }
20388965ea79SLois Curfman McInnes   }
20398965ea79SLois Curfman McInnes 
20408965ea79SLois Curfman McInnes   /* create our matrix */
20418965ea79SLois Curfman McInnes   for (i=0; i<m; i++) {
20428965ea79SLois Curfman McInnes     ourlens[i] -= offlens[i];
20438965ea79SLois Curfman McInnes   }
2044f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,newmat);CHKERRQ(ierr);
2045f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*newmat,m,PETSC_DECIDE,M,N);CHKERRQ(ierr);
2046be5d1d56SKris Buschelman   ierr = MatSetType(*newmat,type);CHKERRQ(ierr);
2047878740d9SKris Buschelman   ierr = MatMPIDenseSetPreallocation(*newmat,PETSC_NULL);CHKERRQ(ierr);
20488965ea79SLois Curfman McInnes   A = *newmat;
20498965ea79SLois Curfman McInnes   for (i=0; i<m; i++) {
20508965ea79SLois Curfman McInnes     ourlens[i] += offlens[i];
20518965ea79SLois Curfman McInnes   }
20528965ea79SLois Curfman McInnes 
20538965ea79SLois Curfman McInnes   if (!rank) {
205487828ca2SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&vals);CHKERRQ(ierr);
20558965ea79SLois Curfman McInnes 
20568965ea79SLois Curfman McInnes     /* read in my part of the matrix numerical values  */
20578965ea79SLois Curfman McInnes     nz = procsnz[0];
20580752156aSBarry Smith     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
20598965ea79SLois Curfman McInnes 
20608965ea79SLois Curfman McInnes     /* insert into matrix */
20618965ea79SLois Curfman McInnes     jj      = rstart;
20628965ea79SLois Curfman McInnes     smycols = mycols;
20638965ea79SLois Curfman McInnes     svals   = vals;
20648965ea79SLois Curfman McInnes     for (i=0; i<m; i++) {
20658965ea79SLois Curfman McInnes       ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr);
20668965ea79SLois Curfman McInnes       smycols += ourlens[i];
20678965ea79SLois Curfman McInnes       svals   += ourlens[i];
20688965ea79SLois Curfman McInnes       jj++;
20698965ea79SLois Curfman McInnes     }
20708965ea79SLois Curfman McInnes 
20718965ea79SLois Curfman McInnes     /* read in other processors and ship out */
20728965ea79SLois Curfman McInnes     for (i=1; i<size; i++) {
20738965ea79SLois Curfman McInnes       nz   = procsnz[i];
20740752156aSBarry Smith       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
20757adad957SLisandro Dalcin       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)A)->tag,comm);CHKERRQ(ierr);
20768965ea79SLois Curfman McInnes     }
2077606d414cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
20783a40ed3dSBarry Smith   } else {
20798965ea79SLois Curfman McInnes     /* receive numeric values */
208084d528b1SBarry Smith     ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&vals);CHKERRQ(ierr);
20818965ea79SLois Curfman McInnes 
20828965ea79SLois Curfman McInnes     /* receive message of values*/
20837adad957SLisandro Dalcin     ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)A)->tag,comm,&status);CHKERRQ(ierr);
2084ca161407SBarry Smith     ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
208529bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
20868965ea79SLois Curfman McInnes 
20878965ea79SLois Curfman McInnes     /* insert into matrix */
20888965ea79SLois Curfman McInnes     jj      = rstart;
20898965ea79SLois Curfman McInnes     smycols = mycols;
20908965ea79SLois Curfman McInnes     svals   = vals;
20918965ea79SLois Curfman McInnes     for (i=0; i<m; i++) {
20928965ea79SLois Curfman McInnes       ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr);
20938965ea79SLois Curfman McInnes       smycols += ourlens[i];
20948965ea79SLois Curfman McInnes       svals   += ourlens[i];
20958965ea79SLois Curfman McInnes       jj++;
20968965ea79SLois Curfman McInnes     }
20978965ea79SLois Curfman McInnes   }
2098606d414cSSatish Balay   ierr = PetscFree(ourlens);CHKERRQ(ierr);
2099606d414cSSatish Balay   ierr = PetscFree(vals);CHKERRQ(ierr);
2100606d414cSSatish Balay   ierr = PetscFree(mycols);CHKERRQ(ierr);
2101606d414cSSatish Balay   ierr = PetscFree(rowners);CHKERRQ(ierr);
21028965ea79SLois Curfman McInnes 
21036d4a8577SBarry Smith   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
21046d4a8577SBarry Smith   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
21053a40ed3dSBarry Smith   PetscFunctionReturn(0);
21068965ea79SLois Curfman McInnes }
210790ace30eSBarry Smith 
21086e4ee0c6SHong Zhang #undef __FUNCT__
21096e4ee0c6SHong Zhang #define __FUNCT__ "MatEqual_MPIDense"
21106e4ee0c6SHong Zhang PetscErrorCode MatEqual_MPIDense(Mat A,Mat B,PetscTruth *flag)
21116e4ee0c6SHong Zhang {
21126e4ee0c6SHong Zhang   Mat_MPIDense   *matB = (Mat_MPIDense*)B->data,*matA = (Mat_MPIDense*)A->data;
21136e4ee0c6SHong Zhang   Mat            a,b;
21146e4ee0c6SHong Zhang   PetscTruth     flg;
21156e4ee0c6SHong Zhang   PetscErrorCode ierr;
211690ace30eSBarry Smith 
21176e4ee0c6SHong Zhang   PetscFunctionBegin;
21186e4ee0c6SHong Zhang   a = matA->A;
21196e4ee0c6SHong Zhang   b = matB->A;
21206e4ee0c6SHong Zhang   ierr = MatEqual(a,b,&flg);CHKERRQ(ierr);
21217adad957SLisandro Dalcin   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr);
21226e4ee0c6SHong Zhang   PetscFunctionReturn(0);
21236e4ee0c6SHong Zhang }
212490ace30eSBarry Smith 
212509d27a7eSBarry Smith #if defined(PETSC_HAVE_PLAPACK)
212609d27a7eSBarry Smith 
212709d27a7eSBarry Smith #undef __FUNCT__
212809d27a7eSBarry Smith #define __FUNCT__ "PetscPLAPACKFinalizePackage"
212909d27a7eSBarry Smith /*@C
213009d27a7eSBarry Smith   PetscPLAPACKFinalizePackage - This function destroys everything in the Petsc interface to PLAPACK.
213109d27a7eSBarry Smith   Level: developer
213209d27a7eSBarry Smith 
213309d27a7eSBarry Smith .keywords: Petsc, destroy, package, PLAPACK
213409d27a7eSBarry Smith .seealso: PetscFinalize()
213509d27a7eSBarry Smith @*/
213609d27a7eSBarry Smith PetscErrorCode PETSC_DLLEXPORT PetscPLAPACKFinalizePackage(void)
213709d27a7eSBarry Smith {
213809d27a7eSBarry Smith   PetscErrorCode ierr;
213909d27a7eSBarry Smith 
214009d27a7eSBarry Smith   PetscFunctionBegin;
214109d27a7eSBarry Smith   ierr = PLA_Finalize();CHKERRQ(ierr);
214209d27a7eSBarry Smith   PetscFunctionReturn(0);
214309d27a7eSBarry Smith }
214409d27a7eSBarry Smith 
214509d27a7eSBarry Smith #undef __FUNCT__
214609d27a7eSBarry Smith #define __FUNCT__ "PetscPLAPACKInitializePackage"
214709d27a7eSBarry Smith /*@C
214809d27a7eSBarry Smith   PetscPLAPACKInitializePackage - This function initializes everything in the Petsc interface to PLAPACK. It is
2149db4efbfdSBarry Smith   called from MatCreate_MPIDense() the first time an MPI dense matrix is called.
215009d27a7eSBarry Smith 
215109d27a7eSBarry Smith   Input Parameter:
2152db4efbfdSBarry Smith .   comm - the communicator the matrix lives on
215309d27a7eSBarry Smith 
215409d27a7eSBarry Smith   Level: developer
215509d27a7eSBarry Smith 
2156db4efbfdSBarry Smith    Notes: PLAPACK does not have a good fit with MPI communicators; all (parallel) PLAPACK objects have to live in the
2157db4efbfdSBarry Smith   same communicator (because there is some global state that is initialized and used for all matrices). In addition if
2158db4efbfdSBarry Smith   PLAPACK is initialized (that is the initial matrices created) are on subcommunicators of MPI_COMM_WORLD, these subcommunicators
2159db4efbfdSBarry Smith   cannot overlap.
2160db4efbfdSBarry Smith 
216109d27a7eSBarry Smith .keywords: Petsc, initialize, package, PLAPACK
216209d27a7eSBarry Smith .seealso: PetscInitializePackage(), PetscInitialize()
216309d27a7eSBarry Smith @*/
2164db4efbfdSBarry Smith PetscErrorCode PETSC_DLLEXPORT PetscPLAPACKInitializePackage(MPI_Comm comm)
216509d27a7eSBarry Smith {
2166eae6fb2eSBarry Smith   PetscMPIInt    size;
216709d27a7eSBarry Smith   PetscErrorCode ierr;
216809d27a7eSBarry Smith 
216909d27a7eSBarry Smith   PetscFunctionBegin;
217009d27a7eSBarry Smith   if (!PLA_Initialized(PETSC_NULL)) {
217109d27a7eSBarry Smith 
217209d27a7eSBarry Smith     ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
217304fea9ffSBarry Smith     Plapack_nprows = 1;
217404fea9ffSBarry Smith     Plapack_npcols = size;
217509d27a7eSBarry Smith 
2176aeccfd6fSBarry Smith     ierr = PetscOptionsBegin(comm,PETSC_NULL,"PLAPACK Options","Mat");CHKERRQ(ierr);
2177aeccfd6fSBarry Smith       ierr = PetscOptionsInt("-plapack_nprows","row dimension of 2D processor mesh","None",Plapack_nprows,&Plapack_nprows,PETSC_NULL);CHKERRQ(ierr);
2178aeccfd6fSBarry Smith       ierr = PetscOptionsInt("-plapack_npcols","column dimension of 2D processor mesh","None",Plapack_npcols,&Plapack_npcols,PETSC_NULL);CHKERRQ(ierr);
217979b0a62dSBarry Smith #if defined(PETSC_USE_DEBUG)
218079b0a62dSBarry Smith       Plapack_ierror = 3;
218179b0a62dSBarry Smith #else
218279b0a62dSBarry Smith       Plapack_ierror = 0;
218379b0a62dSBarry Smith #endif
2184eae6fb2eSBarry Smith       ierr = PetscOptionsInt("-plapack_ckerror","error checking flag","None",Plapack_ierror,&Plapack_ierror,PETSC_NULL);CHKERRQ(ierr);
2185eae6fb2eSBarry Smith       if (Plapack_ierror){
2186eae6fb2eSBarry Smith 	ierr = PLA_Set_error_checking(Plapack_ierror,PETSC_TRUE,PETSC_TRUE,PETSC_FALSE );CHKERRQ(ierr);
2187aeccfd6fSBarry Smith       } else {
2188eae6fb2eSBarry Smith 	ierr = PLA_Set_error_checking(Plapack_ierror,PETSC_FALSE,PETSC_FALSE,PETSC_FALSE );CHKERRQ(ierr);
2189aeccfd6fSBarry Smith       }
2190aeccfd6fSBarry Smith 
2191eae6fb2eSBarry Smith       Plapack_nb_alg = 0;
219279b0a62dSBarry Smith       ierr = PetscOptionsInt("-plapack_nb_alg","algorithmic block size","None",Plapack_nb_alg,&Plapack_nb_alg,PETSC_NULL);CHKERRQ(ierr);
2193eae6fb2eSBarry Smith       if (Plapack_nb_alg) {
2194eae6fb2eSBarry Smith         ierr = pla_Environ_set_nb_alg (PLA_OP_ALL_ALG,Plapack_nb_alg);CHKERRQ(ierr);
2195aeccfd6fSBarry Smith       }
2196aeccfd6fSBarry Smith     PetscOptionsEnd();
2197aeccfd6fSBarry Smith 
219804fea9ffSBarry Smith     ierr = PLA_Comm_1D_to_2D(comm,Plapack_nprows,Plapack_npcols,&Plapack_comm_2d);CHKERRQ(ierr);
219904fea9ffSBarry Smith     ierr = PLA_Init(Plapack_comm_2d);CHKERRQ(ierr);
220009d27a7eSBarry Smith     ierr = PetscRegisterFinalize(PetscPLAPACKFinalizePackage);CHKERRQ(ierr);
220109d27a7eSBarry Smith   }
220209d27a7eSBarry Smith   PetscFunctionReturn(0);
220309d27a7eSBarry Smith }
220490ace30eSBarry Smith 
220590ace30eSBarry Smith 
220609d27a7eSBarry Smith #endif
2207