1be1d678aSKris Buschelman 2ed3cc1f0SBarry Smith /* 3ed3cc1f0SBarry Smith Basic functions for basic parallel dense matrices. 4ed3cc1f0SBarry Smith */ 5ed3cc1f0SBarry Smith 604fea9ffSBarry Smith 7c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h> /*I "petscmat.h" I*/ 88949adfdSHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 98965ea79SLois Curfman McInnes 10ba8c8a56SBarry Smith #undef __FUNCT__ 11ab92ecdeSBarry Smith #define __FUNCT__ "MatDenseGetLocalMatrix" 12ab92ecdeSBarry Smith /*@ 13ab92ecdeSBarry Smith 14ab92ecdeSBarry Smith MatDenseGetLocalMatrix - For a MATMPIDENSE or MATSEQDENSE matrix returns the sequential 15ab92ecdeSBarry Smith matrix that represents the operator. For sequential matrices it returns itself. 16ab92ecdeSBarry Smith 17ab92ecdeSBarry Smith Input Parameter: 18ab92ecdeSBarry Smith . A - the Seq or MPI dense matrix 19ab92ecdeSBarry Smith 20ab92ecdeSBarry Smith Output Parameter: 21ab92ecdeSBarry Smith . B - the inner matrix 22ab92ecdeSBarry Smith 238e6c10adSSatish Balay Level: intermediate 248e6c10adSSatish Balay 25ab92ecdeSBarry Smith @*/ 26ab92ecdeSBarry Smith PetscErrorCode MatDenseGetLocalMatrix(Mat A,Mat *B) 27ab92ecdeSBarry Smith { 28ab92ecdeSBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 29ab92ecdeSBarry Smith PetscErrorCode ierr; 30ace3abfcSBarry Smith PetscBool flg; 31ab92ecdeSBarry Smith 32ab92ecdeSBarry Smith PetscFunctionBegin; 33251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIDENSE,&flg);CHKERRQ(ierr); 342205254eSKarl Rupp if (flg) *B = mat->A; 352205254eSKarl Rupp else *B = A; 36ab92ecdeSBarry Smith PetscFunctionReturn(0); 37ab92ecdeSBarry Smith } 38ab92ecdeSBarry Smith 39ab92ecdeSBarry Smith #undef __FUNCT__ 40ba8c8a56SBarry Smith #define __FUNCT__ "MatGetRow_MPIDense" 41ba8c8a56SBarry Smith PetscErrorCode MatGetRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 42ba8c8a56SBarry Smith { 43ba8c8a56SBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 44ba8c8a56SBarry Smith PetscErrorCode ierr; 45d0f46423SBarry Smith PetscInt lrow,rstart = A->rmap->rstart,rend = A->rmap->rend; 46ba8c8a56SBarry Smith 47ba8c8a56SBarry Smith PetscFunctionBegin; 48e7e72b3dSBarry Smith if (row < rstart || row >= rend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows"); 49ba8c8a56SBarry Smith lrow = row - rstart; 50ba8c8a56SBarry Smith ierr = MatGetRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v);CHKERRQ(ierr); 51ba8c8a56SBarry Smith PetscFunctionReturn(0); 52ba8c8a56SBarry Smith } 53ba8c8a56SBarry Smith 54ba8c8a56SBarry Smith #undef __FUNCT__ 55ba8c8a56SBarry Smith #define __FUNCT__ "MatRestoreRow_MPIDense" 56ba8c8a56SBarry Smith PetscErrorCode MatRestoreRow_MPIDense(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 57ba8c8a56SBarry Smith { 58ba8c8a56SBarry Smith PetscErrorCode ierr; 59ba8c8a56SBarry Smith 60ba8c8a56SBarry Smith PetscFunctionBegin; 61ba8c8a56SBarry Smith if (idx) {ierr = PetscFree(*idx);CHKERRQ(ierr);} 62ba8c8a56SBarry Smith if (v) {ierr = PetscFree(*v);CHKERRQ(ierr);} 63ba8c8a56SBarry Smith PetscFunctionReturn(0); 64ba8c8a56SBarry Smith } 65ba8c8a56SBarry Smith 664a2ae208SSatish Balay #undef __FUNCT__ 674a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIDense" 6811bd1e4dSLisandro Dalcin PetscErrorCode MatGetDiagonalBlock_MPIDense(Mat A,Mat *a) 690de54da6SSatish Balay { 700de54da6SSatish Balay Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 716849ba73SBarry Smith PetscErrorCode ierr; 72d0f46423SBarry Smith PetscInt m = A->rmap->n,rstart = A->rmap->rstart; 7387828ca2SBarry Smith PetscScalar *array; 740de54da6SSatish Balay MPI_Comm comm; 7511bd1e4dSLisandro Dalcin Mat B; 760de54da6SSatish Balay 770de54da6SSatish Balay PetscFunctionBegin; 78e32f2f54SBarry Smith if (A->rmap->N != A->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only square matrices supported."); 790de54da6SSatish Balay 8011bd1e4dSLisandro Dalcin ierr = PetscObjectQuery((PetscObject)A,"DiagonalBlock",(PetscObject*)&B);CHKERRQ(ierr); 8111bd1e4dSLisandro Dalcin if (!B) { 820de54da6SSatish Balay ierr = PetscObjectGetComm((PetscObject)(mdn->A),&comm);CHKERRQ(ierr); 8311bd1e4dSLisandro Dalcin ierr = MatCreate(comm,&B);CHKERRQ(ierr); 8411bd1e4dSLisandro Dalcin ierr = MatSetSizes(B,m,m,m,m);CHKERRQ(ierr); 8511bd1e4dSLisandro Dalcin ierr = MatSetType(B,((PetscObject)mdn->A)->type_name);CHKERRQ(ierr); 868c778c55SBarry Smith ierr = MatDenseGetArray(mdn->A,&array);CHKERRQ(ierr); 8711bd1e4dSLisandro Dalcin ierr = MatSeqDenseSetPreallocation(B,array+m*rstart);CHKERRQ(ierr); 888c778c55SBarry Smith ierr = MatDenseRestoreArray(mdn->A,&array);CHKERRQ(ierr); 8911bd1e4dSLisandro Dalcin ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 9011bd1e4dSLisandro Dalcin ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 9111bd1e4dSLisandro Dalcin ierr = PetscObjectCompose((PetscObject)A,"DiagonalBlock",(PetscObject)B);CHKERRQ(ierr); 9211bd1e4dSLisandro Dalcin *a = B; 9311bd1e4dSLisandro Dalcin ierr = MatDestroy(&B);CHKERRQ(ierr); 942205254eSKarl Rupp } else *a = B; 950de54da6SSatish Balay PetscFunctionReturn(0); 960de54da6SSatish Balay } 970de54da6SSatish Balay 984a2ae208SSatish Balay #undef __FUNCT__ 994a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIDense" 10013f74950SBarry Smith PetscErrorCode MatSetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],const PetscScalar v[],InsertMode addv) 1018965ea79SLois Curfman McInnes { 10239b7565bSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)mat->data; 103dfbe8321SBarry Smith PetscErrorCode ierr; 104d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 105ace3abfcSBarry Smith PetscBool roworiented = A->roworiented; 1068965ea79SLois Curfman McInnes 1073a40ed3dSBarry Smith PetscFunctionBegin; 10871fd2e92SBarry Smith if (v) PetscValidScalarPointer(v,6); 1098965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 1105ef9f2a5SBarry Smith if (idxm[i] < 0) continue; 111e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 1128965ea79SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 1138965ea79SLois Curfman McInnes row = idxm[i] - rstart; 11439b7565bSBarry Smith if (roworiented) { 11539b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv);CHKERRQ(ierr); 1163a40ed3dSBarry Smith } else { 1178965ea79SLois Curfman McInnes for (j=0; j<n; j++) { 1185ef9f2a5SBarry Smith if (idxn[j] < 0) continue; 119e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 12039b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv);CHKERRQ(ierr); 12139b7565bSBarry Smith } 1228965ea79SLois Curfman McInnes } 1232205254eSKarl Rupp } else if (!A->donotstash) { 1245080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 12539b7565bSBarry Smith if (roworiented) { 126b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,idxm[i],n,idxn,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 127d36fbae8SSatish Balay } else { 128b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,idxm[i],n,idxn,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 12939b7565bSBarry Smith } 130b49de8d1SLois Curfman McInnes } 131b49de8d1SLois Curfman McInnes } 1323a40ed3dSBarry Smith PetscFunctionReturn(0); 133b49de8d1SLois Curfman McInnes } 134b49de8d1SLois Curfman McInnes 1354a2ae208SSatish Balay #undef __FUNCT__ 1364a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIDense" 13713f74950SBarry Smith PetscErrorCode MatGetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 138b49de8d1SLois Curfman McInnes { 139b49de8d1SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 140dfbe8321SBarry Smith PetscErrorCode ierr; 141d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 142b49de8d1SLois Curfman McInnes 1433a40ed3dSBarry Smith PetscFunctionBegin; 144b49de8d1SLois Curfman McInnes for (i=0; i<m; i++) { 145e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); */ 146e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 147b49de8d1SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 148b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 149b49de8d1SLois Curfman McInnes for (j=0; j<n; j++) { 150e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); */ 151e7e72b3dSBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 152b49de8d1SLois Curfman McInnes ierr = MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j);CHKERRQ(ierr); 153b49de8d1SLois Curfman McInnes } 154e7e72b3dSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 1558965ea79SLois Curfman McInnes } 1563a40ed3dSBarry Smith PetscFunctionReturn(0); 1578965ea79SLois Curfman McInnes } 1588965ea79SLois Curfman McInnes 1594a2ae208SSatish Balay #undef __FUNCT__ 1608c778c55SBarry Smith #define __FUNCT__ "MatDenseGetArray_MPIDense" 1618c778c55SBarry Smith PetscErrorCode MatDenseGetArray_MPIDense(Mat A,PetscScalar *array[]) 162ff14e315SSatish Balay { 163ff14e315SSatish Balay Mat_MPIDense *a = (Mat_MPIDense*)A->data; 164dfbe8321SBarry Smith PetscErrorCode ierr; 165ff14e315SSatish Balay 1663a40ed3dSBarry Smith PetscFunctionBegin; 1678c778c55SBarry Smith ierr = MatDenseGetArray(a->A,array);CHKERRQ(ierr); 1683a40ed3dSBarry Smith PetscFunctionReturn(0); 169ff14e315SSatish Balay } 170ff14e315SSatish Balay 1714a2ae208SSatish Balay #undef __FUNCT__ 1724a2ae208SSatish Balay #define __FUNCT__ "MatGetSubMatrix_MPIDense" 1734aa3045dSJed Brown static PetscErrorCode MatGetSubMatrix_MPIDense(Mat A,IS isrow,IS iscol,MatReuse scall,Mat *B) 174ca3fa75bSLois Curfman McInnes { 175ca3fa75bSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data,*newmatd; 176ca3fa75bSLois Curfman McInnes Mat_SeqDense *lmat = (Mat_SeqDense*)mat->A->data; 1776849ba73SBarry Smith PetscErrorCode ierr; 1784aa3045dSJed Brown PetscInt i,j,rstart,rend,nrows,ncols,Ncols,nlrows,nlcols; 1795d0c19d7SBarry Smith const PetscInt *irow,*icol; 18087828ca2SBarry Smith PetscScalar *av,*bv,*v = lmat->v; 181ca3fa75bSLois Curfman McInnes Mat newmat; 1824aa3045dSJed Brown IS iscol_local; 183ca3fa75bSLois Curfman McInnes 184ca3fa75bSLois Curfman McInnes PetscFunctionBegin; 1854aa3045dSJed Brown ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 186ca3fa75bSLois Curfman McInnes ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr); 1874aa3045dSJed Brown ierr = ISGetIndices(iscol_local,&icol);CHKERRQ(ierr); 188b9b97703SBarry Smith ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr); 189b9b97703SBarry Smith ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr); 1904aa3045dSJed Brown ierr = ISGetSize(iscol,&Ncols);CHKERRQ(ierr); /* global number of columns, size of iscol_local */ 191ca3fa75bSLois Curfman McInnes 192ca3fa75bSLois Curfman McInnes /* No parallel redistribution currently supported! Should really check each index set 1937eba5e9cSLois Curfman McInnes to comfirm that it is OK. ... Currently supports only submatrix same partitioning as 1947eba5e9cSLois Curfman McInnes original matrix! */ 195ca3fa75bSLois Curfman McInnes 196ca3fa75bSLois Curfman McInnes ierr = MatGetLocalSize(A,&nlrows,&nlcols);CHKERRQ(ierr); 1977eba5e9cSLois Curfman McInnes ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr); 198ca3fa75bSLois Curfman McInnes 199ca3fa75bSLois Curfman McInnes /* Check submatrix call */ 200ca3fa75bSLois Curfman McInnes if (scall == MAT_REUSE_MATRIX) { 201e32f2f54SBarry Smith /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */ 2027eba5e9cSLois Curfman McInnes /* Really need to test rows and column sizes! */ 203ca3fa75bSLois Curfman McInnes newmat = *B; 204ca3fa75bSLois Curfman McInnes } else { 205ca3fa75bSLois Curfman McInnes /* Create and fill new matrix */ 206ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&newmat);CHKERRQ(ierr); 2074aa3045dSJed Brown ierr = MatSetSizes(newmat,nrows,ncols,PETSC_DECIDE,Ncols);CHKERRQ(ierr); 2087adad957SLisandro Dalcin ierr = MatSetType(newmat,((PetscObject)A)->type_name);CHKERRQ(ierr); 2090298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr); 210ca3fa75bSLois Curfman McInnes } 211ca3fa75bSLois Curfman McInnes 212ca3fa75bSLois Curfman McInnes /* Now extract the data pointers and do the copy, column at a time */ 213ca3fa75bSLois Curfman McInnes newmatd = (Mat_MPIDense*)newmat->data; 214ca3fa75bSLois Curfman McInnes bv = ((Mat_SeqDense*)newmatd->A->data)->v; 215ca3fa75bSLois Curfman McInnes 2164aa3045dSJed Brown for (i=0; i<Ncols; i++) { 21725a33276SHong Zhang av = v + ((Mat_SeqDense*)mat->A->data)->lda*icol[i]; 218ca3fa75bSLois Curfman McInnes for (j=0; j<nrows; j++) { 2197eba5e9cSLois Curfman McInnes *bv++ = av[irow[j] - rstart]; 220ca3fa75bSLois Curfman McInnes } 221ca3fa75bSLois Curfman McInnes } 222ca3fa75bSLois Curfman McInnes 223ca3fa75bSLois Curfman McInnes /* Assemble the matrices so that the correct flags are set */ 224ca3fa75bSLois Curfman McInnes ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 225ca3fa75bSLois Curfman McInnes ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 226ca3fa75bSLois Curfman McInnes 227ca3fa75bSLois Curfman McInnes /* Free work space */ 228ca3fa75bSLois Curfman McInnes ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr); 2295bdf786aSShri Abhyankar ierr = ISRestoreIndices(iscol_local,&icol);CHKERRQ(ierr); 23032bb1f2dSLisandro Dalcin ierr = ISDestroy(&iscol_local);CHKERRQ(ierr); 231ca3fa75bSLois Curfman McInnes *B = newmat; 232ca3fa75bSLois Curfman McInnes PetscFunctionReturn(0); 233ca3fa75bSLois Curfman McInnes } 234ca3fa75bSLois Curfman McInnes 2354a2ae208SSatish Balay #undef __FUNCT__ 2368c778c55SBarry Smith #define __FUNCT__ "MatDenseRestoreArray_MPIDense" 2378c778c55SBarry Smith PetscErrorCode MatDenseRestoreArray_MPIDense(Mat A,PetscScalar *array[]) 238ff14e315SSatish Balay { 23973a71a0fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 24073a71a0fSBarry Smith PetscErrorCode ierr; 24173a71a0fSBarry Smith 2423a40ed3dSBarry Smith PetscFunctionBegin; 2438c778c55SBarry Smith ierr = MatDenseRestoreArray(a->A,array);CHKERRQ(ierr); 2443a40ed3dSBarry Smith PetscFunctionReturn(0); 245ff14e315SSatish Balay } 246ff14e315SSatish Balay 2474a2ae208SSatish Balay #undef __FUNCT__ 2484a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIDense" 249dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode) 2508965ea79SLois Curfman McInnes { 25139ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 252ce94432eSBarry Smith MPI_Comm comm; 253dfbe8321SBarry Smith PetscErrorCode ierr; 25413f74950SBarry Smith PetscInt nstash,reallocs; 2558965ea79SLois Curfman McInnes InsertMode addv; 2568965ea79SLois Curfman McInnes 2573a40ed3dSBarry Smith PetscFunctionBegin; 258ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)mat,&comm);CHKERRQ(ierr); 2598965ea79SLois Curfman McInnes /* make sure all processors are either in INSERTMODE or ADDMODE */ 260c3aae356SJed Brown ierr = MPI_Allreduce((PetscEnum*)&mat->insertmode,(PetscEnum*)&addv,1,MPIU_ENUM,MPI_BOR,comm);CHKERRQ(ierr); 261ce94432eSBarry Smith if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ARG_WRONGSTATE,"Cannot mix adds/inserts on different procs"); 262e0fa3b82SLois Curfman McInnes mat->insertmode = addv; /* in case this processor had no cache */ 2638965ea79SLois Curfman McInnes 264d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 2658798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 266ae15b995SBarry Smith ierr = PetscInfo2(mdn->A,"Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 2673a40ed3dSBarry Smith PetscFunctionReturn(0); 2688965ea79SLois Curfman McInnes } 2698965ea79SLois Curfman McInnes 2704a2ae208SSatish Balay #undef __FUNCT__ 2714a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIDense" 272dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode) 2738965ea79SLois Curfman McInnes { 27439ddd567SLois Curfman McInnes Mat_MPIDense *mdn=(Mat_MPIDense*)mat->data; 2756849ba73SBarry Smith PetscErrorCode ierr; 27613f74950SBarry Smith PetscInt i,*row,*col,flg,j,rstart,ncols; 27713f74950SBarry Smith PetscMPIInt n; 27887828ca2SBarry Smith PetscScalar *val; 279e0fa3b82SLois Curfman McInnes InsertMode addv=mat->insertmode; 2808965ea79SLois Curfman McInnes 2813a40ed3dSBarry Smith PetscFunctionBegin; 2828965ea79SLois Curfman McInnes /* wait on receives */ 2837ef1d9bdSSatish Balay while (1) { 2848798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 2857ef1d9bdSSatish Balay if (!flg) break; 2868965ea79SLois Curfman McInnes 2877ef1d9bdSSatish Balay for (i=0; i<n;) { 2887ef1d9bdSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 2892205254eSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 2902205254eSKarl Rupp if (row[j] != rstart) break; 2912205254eSKarl Rupp } 2927ef1d9bdSSatish Balay if (j < n) ncols = j-i; 2937ef1d9bdSSatish Balay else ncols = n-i; 2947ef1d9bdSSatish Balay /* Now assemble all these values with a single function call */ 2957ef1d9bdSSatish Balay ierr = MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 2967ef1d9bdSSatish Balay i = j; 2978965ea79SLois Curfman McInnes } 2987ef1d9bdSSatish Balay } 2998798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 3008965ea79SLois Curfman McInnes 30139ddd567SLois Curfman McInnes ierr = MatAssemblyBegin(mdn->A,mode);CHKERRQ(ierr); 30239ddd567SLois Curfman McInnes ierr = MatAssemblyEnd(mdn->A,mode);CHKERRQ(ierr); 3038965ea79SLois Curfman McInnes 3046d4a8577SBarry Smith if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 30539ddd567SLois Curfman McInnes ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 3068965ea79SLois Curfman McInnes } 3073a40ed3dSBarry Smith PetscFunctionReturn(0); 3088965ea79SLois Curfman McInnes } 3098965ea79SLois Curfman McInnes 3104a2ae208SSatish Balay #undef __FUNCT__ 3114a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIDense" 312dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIDense(Mat A) 3138965ea79SLois Curfman McInnes { 314dfbe8321SBarry Smith PetscErrorCode ierr; 31539ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 3163a40ed3dSBarry Smith 3173a40ed3dSBarry Smith PetscFunctionBegin; 3183a40ed3dSBarry Smith ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 3193a40ed3dSBarry Smith PetscFunctionReturn(0); 3208965ea79SLois Curfman McInnes } 3218965ea79SLois Curfman McInnes 3228965ea79SLois Curfman McInnes /* the code does not do the diagonal entries correctly unless the 3238965ea79SLois Curfman McInnes matrix is square and the column and row owerships are identical. 3248965ea79SLois Curfman McInnes This is a BUG. The only way to fix it seems to be to access 3253501a2bdSLois Curfman McInnes mdn->A and mdn->B directly and not through the MatZeroRows() 3268965ea79SLois Curfman McInnes routine. 3278965ea79SLois Curfman McInnes */ 3284a2ae208SSatish Balay #undef __FUNCT__ 3294a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIDense" 3302b40b63fSBarry Smith PetscErrorCode MatZeroRows_MPIDense(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 3318965ea79SLois Curfman McInnes { 33239ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 3336849ba73SBarry Smith PetscErrorCode ierr; 334d0f46423SBarry Smith PetscInt i,*owners = A->rmap->range; 33576ec1555SBarry Smith PetscInt *sizes,j,idx,nsends; 33613f74950SBarry Smith PetscInt nmax,*svalues,*starts,*owner,nrecvs; 3377adad957SLisandro Dalcin PetscInt *rvalues,tag = ((PetscObject)A)->tag,count,base,slen,*source; 33813f74950SBarry Smith PetscInt *lens,*lrows,*values; 33913f74950SBarry Smith PetscMPIInt n,imdex,rank = l->rank,size = l->size; 340ce94432eSBarry Smith MPI_Comm comm; 3418965ea79SLois Curfman McInnes MPI_Request *send_waits,*recv_waits; 3428965ea79SLois Curfman McInnes MPI_Status recv_status,*send_status; 343ace3abfcSBarry Smith PetscBool found; 34497b48c8fSBarry Smith const PetscScalar *xx; 34597b48c8fSBarry Smith PetscScalar *bb; 3468965ea79SLois Curfman McInnes 3473a40ed3dSBarry Smith PetscFunctionBegin; 348ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 349ce94432eSBarry Smith if (A->rmap->N != A->cmap->N) SETERRQ(comm,PETSC_ERR_SUP,"Only handles square matrices"); 350b9679d65SBarry Smith if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only handles matrices with identical column and row ownership"); 3518965ea79SLois Curfman McInnes /* first count number of contributors to each processor */ 352f628708eSJed Brown ierr = PetscCalloc1(2*size,&sizes);CHKERRQ(ierr); 353037dbc42SBarry Smith ierr = PetscMalloc1(N+1,&owner);CHKERRQ(ierr); /* see note*/ 3548965ea79SLois Curfman McInnes for (i=0; i<N; i++) { 3558965ea79SLois Curfman McInnes idx = rows[i]; 35635d8aa7fSBarry Smith found = PETSC_FALSE; 3578965ea79SLois Curfman McInnes for (j=0; j<size; j++) { 3588965ea79SLois Curfman McInnes if (idx >= owners[j] && idx < owners[j+1]) { 35976ec1555SBarry Smith sizes[2*j]++; sizes[2*j+1] = 1; owner[i] = j; found = PETSC_TRUE; break; 3608965ea79SLois Curfman McInnes } 3618965ea79SLois Curfman McInnes } 362e32f2f54SBarry Smith if (!found) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Index out of range"); 3638965ea79SLois Curfman McInnes } 3642205254eSKarl Rupp nsends = 0; 36576ec1555SBarry Smith for (i=0; i<size; i++) nsends += sizes[2*i+1]; 3668965ea79SLois Curfman McInnes 3678965ea79SLois Curfman McInnes /* inform other processors of number of messages and max length*/ 36876ec1555SBarry Smith ierr = PetscMaxSum(comm,sizes,&nmax,&nrecvs);CHKERRQ(ierr); 3698965ea79SLois Curfman McInnes 3708965ea79SLois Curfman McInnes /* post receives: */ 371785e854fSJed Brown ierr = PetscMalloc1((nrecvs+1)*(nmax+1),&rvalues);CHKERRQ(ierr); 372785e854fSJed Brown ierr = PetscMalloc1((nrecvs+1),&recv_waits);CHKERRQ(ierr); 3738965ea79SLois Curfman McInnes for (i=0; i<nrecvs; i++) { 37413f74950SBarry Smith ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 3758965ea79SLois Curfman McInnes } 3768965ea79SLois Curfman McInnes 3778965ea79SLois Curfman McInnes /* do sends: 3788965ea79SLois Curfman McInnes 1) starts[i] gives the starting index in svalues for stuff going to 3798965ea79SLois Curfman McInnes the ith processor 3808965ea79SLois Curfman McInnes */ 381785e854fSJed Brown ierr = PetscMalloc1((N+1),&svalues);CHKERRQ(ierr); 382785e854fSJed Brown ierr = PetscMalloc1((nsends+1),&send_waits);CHKERRQ(ierr); 383785e854fSJed Brown ierr = PetscMalloc1((size+1),&starts);CHKERRQ(ierr); 3848965ea79SLois Curfman McInnes 3858965ea79SLois Curfman McInnes starts[0] = 0; 38676ec1555SBarry Smith for (i=1; i<size; i++) starts[i] = starts[i-1] + sizes[2*i-2]; 3872205254eSKarl Rupp for (i=0; i<N; i++) svalues[starts[owner[i]]++] = rows[i]; 3882205254eSKarl Rupp 3892205254eSKarl Rupp starts[0] = 0; 39076ec1555SBarry Smith for (i=1; i<size+1; i++) starts[i] = starts[i-1] + sizes[2*i-2]; 3918965ea79SLois Curfman McInnes count = 0; 3928965ea79SLois Curfman McInnes for (i=0; i<size; i++) { 39376ec1555SBarry Smith if (sizes[2*i+1]) { 39476ec1555SBarry Smith ierr = MPI_Isend(svalues+starts[i],sizes[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 3958965ea79SLois Curfman McInnes } 3968965ea79SLois Curfman McInnes } 397606d414cSSatish Balay ierr = PetscFree(starts);CHKERRQ(ierr); 3988965ea79SLois Curfman McInnes 3998965ea79SLois Curfman McInnes base = owners[rank]; 4008965ea79SLois Curfman McInnes 4018965ea79SLois Curfman McInnes /* wait on receives */ 402dcca6d9dSJed Brown ierr = PetscMalloc2(nrecvs,&lens,nrecvs,&source);CHKERRQ(ierr); 40374ed9c26SBarry Smith count = nrecvs; 40474ed9c26SBarry Smith slen = 0; 4058965ea79SLois Curfman McInnes while (count) { 406ca161407SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 4078965ea79SLois Curfman McInnes /* unpack receives into our local space */ 40813f74950SBarry Smith ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr); 4092205254eSKarl Rupp 4108965ea79SLois Curfman McInnes source[imdex] = recv_status.MPI_SOURCE; 4118965ea79SLois Curfman McInnes lens[imdex] = n; 4128965ea79SLois Curfman McInnes slen += n; 4138965ea79SLois Curfman McInnes count--; 4148965ea79SLois Curfman McInnes } 415606d414cSSatish Balay ierr = PetscFree(recv_waits);CHKERRQ(ierr); 4168965ea79SLois Curfman McInnes 4178965ea79SLois Curfman McInnes /* move the data into the send scatter */ 418785e854fSJed Brown ierr = PetscMalloc1((slen+1),&lrows);CHKERRQ(ierr); 4198965ea79SLois Curfman McInnes count = 0; 4208965ea79SLois Curfman McInnes for (i=0; i<nrecvs; i++) { 4218965ea79SLois Curfman McInnes values = rvalues + i*nmax; 4228965ea79SLois Curfman McInnes for (j=0; j<lens[i]; j++) { 4238965ea79SLois Curfman McInnes lrows[count++] = values[j] - base; 4248965ea79SLois Curfman McInnes } 4258965ea79SLois Curfman McInnes } 426606d414cSSatish Balay ierr = PetscFree(rvalues);CHKERRQ(ierr); 42774ed9c26SBarry Smith ierr = PetscFree2(lens,source);CHKERRQ(ierr); 428606d414cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 42976ec1555SBarry Smith ierr = PetscFree(sizes);CHKERRQ(ierr); 4308965ea79SLois Curfman McInnes 43197b48c8fSBarry Smith /* fix right hand side if needed */ 43297b48c8fSBarry Smith if (x && b) { 43397b48c8fSBarry Smith ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr); 43497b48c8fSBarry Smith ierr = VecGetArray(b,&bb);CHKERRQ(ierr); 43597b48c8fSBarry Smith for (i=0; i<slen; i++) { 43697b48c8fSBarry Smith bb[lrows[i]] = diag*xx[lrows[i]]; 43797b48c8fSBarry Smith } 43897b48c8fSBarry Smith ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr); 43997b48c8fSBarry Smith ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr); 44097b48c8fSBarry Smith } 44197b48c8fSBarry Smith 4428965ea79SLois Curfman McInnes /* actually zap the local rows */ 443b9679d65SBarry Smith ierr = MatZeroRows(l->A,slen,lrows,0.0,0,0);CHKERRQ(ierr); 444e2eb51b1SBarry Smith if (diag != 0.0) { 445b9679d65SBarry Smith Mat_SeqDense *ll = (Mat_SeqDense*)l->A->data; 446b9679d65SBarry Smith PetscInt m = ll->lda, i; 447b9679d65SBarry Smith 448b9679d65SBarry Smith for (i=0; i<slen; i++) { 449b9679d65SBarry Smith ll->v[lrows[i] + m*(A->cmap->rstart + lrows[i])] = diag; 450b9679d65SBarry Smith } 451b9679d65SBarry Smith } 452606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 4538965ea79SLois Curfman McInnes 4548965ea79SLois Curfman McInnes /* wait on sends */ 4558965ea79SLois Curfman McInnes if (nsends) { 456785e854fSJed Brown ierr = PetscMalloc1(nsends,&send_status);CHKERRQ(ierr); 457ca161407SBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 458606d414cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 4598965ea79SLois Curfman McInnes } 460606d414cSSatish Balay ierr = PetscFree(send_waits);CHKERRQ(ierr); 461606d414cSSatish Balay ierr = PetscFree(svalues);CHKERRQ(ierr); 4623a40ed3dSBarry Smith PetscFunctionReturn(0); 4638965ea79SLois Curfman McInnes } 4648965ea79SLois Curfman McInnes 4654a2ae208SSatish Balay #undef __FUNCT__ 4664a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIDense" 467dfbe8321SBarry Smith PetscErrorCode MatMult_MPIDense(Mat mat,Vec xx,Vec yy) 4688965ea79SLois Curfman McInnes { 46939ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 470dfbe8321SBarry Smith PetscErrorCode ierr; 471c456f294SBarry Smith 4723a40ed3dSBarry Smith PetscFunctionBegin; 473ca9f406cSSatish Balay ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 474ca9f406cSSatish Balay ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 47544cd7ae7SLois Curfman McInnes ierr = MatMult_SeqDense(mdn->A,mdn->lvec,yy);CHKERRQ(ierr); 4763a40ed3dSBarry Smith PetscFunctionReturn(0); 4778965ea79SLois Curfman McInnes } 4788965ea79SLois Curfman McInnes 4794a2ae208SSatish Balay #undef __FUNCT__ 4804a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIDense" 481dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz) 4828965ea79SLois Curfman McInnes { 48339ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 484dfbe8321SBarry Smith PetscErrorCode ierr; 485c456f294SBarry Smith 4863a40ed3dSBarry Smith PetscFunctionBegin; 487ca9f406cSSatish Balay ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 488ca9f406cSSatish Balay ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 48944cd7ae7SLois Curfman McInnes ierr = MatMultAdd_SeqDense(mdn->A,mdn->lvec,yy,zz);CHKERRQ(ierr); 4903a40ed3dSBarry Smith PetscFunctionReturn(0); 4918965ea79SLois Curfman McInnes } 4928965ea79SLois Curfman McInnes 4934a2ae208SSatish Balay #undef __FUNCT__ 4944a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIDense" 495dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIDense(Mat A,Vec xx,Vec yy) 496096963f5SLois Curfman McInnes { 497096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 498dfbe8321SBarry Smith PetscErrorCode ierr; 49987828ca2SBarry Smith PetscScalar zero = 0.0; 500096963f5SLois Curfman McInnes 5013a40ed3dSBarry Smith PetscFunctionBegin; 5022dcb1b2aSMatthew Knepley ierr = VecSet(yy,zero);CHKERRQ(ierr); 5037c922b88SBarry Smith ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr); 504ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 505ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 5063a40ed3dSBarry Smith PetscFunctionReturn(0); 507096963f5SLois Curfman McInnes } 508096963f5SLois Curfman McInnes 5094a2ae208SSatish Balay #undef __FUNCT__ 5104a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIDense" 511dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz) 512096963f5SLois Curfman McInnes { 513096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 514dfbe8321SBarry Smith PetscErrorCode ierr; 515096963f5SLois Curfman McInnes 5163a40ed3dSBarry Smith PetscFunctionBegin; 5173501a2bdSLois Curfman McInnes ierr = VecCopy(yy,zz);CHKERRQ(ierr); 5187c922b88SBarry Smith ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr); 519ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 520ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 5213a40ed3dSBarry Smith PetscFunctionReturn(0); 522096963f5SLois Curfman McInnes } 523096963f5SLois Curfman McInnes 5244a2ae208SSatish Balay #undef __FUNCT__ 5254a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIDense" 526dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIDense(Mat A,Vec v) 5278965ea79SLois Curfman McInnes { 52839ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 529096963f5SLois Curfman McInnes Mat_SeqDense *aloc = (Mat_SeqDense*)a->A->data; 530dfbe8321SBarry Smith PetscErrorCode ierr; 531d0f46423SBarry Smith PetscInt len,i,n,m = A->rmap->n,radd; 53287828ca2SBarry Smith PetscScalar *x,zero = 0.0; 533ed3cc1f0SBarry Smith 5343a40ed3dSBarry Smith PetscFunctionBegin; 5352dcb1b2aSMatthew Knepley ierr = VecSet(v,zero);CHKERRQ(ierr); 5361ebc52fbSHong Zhang ierr = VecGetArray(v,&x);CHKERRQ(ierr); 537096963f5SLois Curfman McInnes ierr = VecGetSize(v,&n);CHKERRQ(ierr); 538e32f2f54SBarry Smith if (n != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec"); 539d0f46423SBarry Smith len = PetscMin(a->A->rmap->n,a->A->cmap->n); 540d0f46423SBarry Smith radd = A->rmap->rstart*m; 54144cd7ae7SLois Curfman McInnes for (i=0; i<len; i++) { 542096963f5SLois Curfman McInnes x[i] = aloc->v[radd + i*m + i]; 543096963f5SLois Curfman McInnes } 5441ebc52fbSHong Zhang ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 5453a40ed3dSBarry Smith PetscFunctionReturn(0); 5468965ea79SLois Curfman McInnes } 5478965ea79SLois Curfman McInnes 5484a2ae208SSatish Balay #undef __FUNCT__ 5494a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIDense" 550dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIDense(Mat mat) 5518965ea79SLois Curfman McInnes { 5523501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 553dfbe8321SBarry Smith PetscErrorCode ierr; 554ed3cc1f0SBarry Smith 5553a40ed3dSBarry Smith PetscFunctionBegin; 556aa482453SBarry Smith #if defined(PETSC_USE_LOG) 557d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D, Cols=%D",mat->rmap->N,mat->cmap->N); 5588965ea79SLois Curfman McInnes #endif 5598798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 5606bf464f9SBarry Smith ierr = MatDestroy(&mdn->A);CHKERRQ(ierr); 5616bf464f9SBarry Smith ierr = VecDestroy(&mdn->lvec);CHKERRQ(ierr); 5626bf464f9SBarry Smith ierr = VecScatterDestroy(&mdn->Mvctx);CHKERRQ(ierr); 56301b82886SBarry Smith 564bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 565dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 566bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C",NULL);CHKERRQ(ierr); 567bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",NULL);CHKERRQ(ierr); 568bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMult_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 569bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 570bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 5713a40ed3dSBarry Smith PetscFunctionReturn(0); 5728965ea79SLois Curfman McInnes } 57339ddd567SLois Curfman McInnes 5744a2ae208SSatish Balay #undef __FUNCT__ 5754a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense_Binary" 5766849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_Binary(Mat mat,PetscViewer viewer) 5778965ea79SLois Curfman McInnes { 57839ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 579dfbe8321SBarry Smith PetscErrorCode ierr; 580aa05aa95SBarry Smith PetscViewerFormat format; 581aa05aa95SBarry Smith int fd; 582d0f46423SBarry Smith PetscInt header[4],mmax,N = mat->cmap->N,i,j,m,k; 583aa05aa95SBarry Smith PetscMPIInt rank,tag = ((PetscObject)viewer)->tag,size; 584578230a0SSatish Balay PetscScalar *work,*v,*vv; 585aa05aa95SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)mdn->A->data; 5867056b6fcSBarry Smith 5873a40ed3dSBarry Smith PetscFunctionBegin; 58839ddd567SLois Curfman McInnes if (mdn->size == 1) { 58939ddd567SLois Curfman McInnes ierr = MatView(mdn->A,viewer);CHKERRQ(ierr); 590aa05aa95SBarry Smith } else { 591aa05aa95SBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 592ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr); 593ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&size);CHKERRQ(ierr); 594aa05aa95SBarry Smith 595aa05aa95SBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 596f4403165SShri Abhyankar if (format == PETSC_VIEWER_NATIVE) { 597aa05aa95SBarry Smith 598aa05aa95SBarry Smith if (!rank) { 599aa05aa95SBarry Smith /* store the matrix as a dense matrix */ 6000700a824SBarry Smith header[0] = MAT_FILE_CLASSID; 601d0f46423SBarry Smith header[1] = mat->rmap->N; 602aa05aa95SBarry Smith header[2] = N; 603aa05aa95SBarry Smith header[3] = MATRIX_BINARY_FORMAT_DENSE; 604aa05aa95SBarry Smith ierr = PetscBinaryWrite(fd,header,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 605aa05aa95SBarry Smith 606aa05aa95SBarry Smith /* get largest work array needed for transposing array */ 607d0f46423SBarry Smith mmax = mat->rmap->n; 608aa05aa95SBarry Smith for (i=1; i<size; i++) { 609d0f46423SBarry Smith mmax = PetscMax(mmax,mat->rmap->range[i+1] - mat->rmap->range[i]); 6108965ea79SLois Curfman McInnes } 611785e854fSJed Brown ierr = PetscMalloc1(mmax*N,&work);CHKERRQ(ierr); 612aa05aa95SBarry Smith 613aa05aa95SBarry Smith /* write out local array, by rows */ 614d0f46423SBarry Smith m = mat->rmap->n; 615aa05aa95SBarry Smith v = a->v; 616aa05aa95SBarry Smith for (j=0; j<N; j++) { 617aa05aa95SBarry Smith for (i=0; i<m; i++) { 618578230a0SSatish Balay work[j + i*N] = *v++; 619aa05aa95SBarry Smith } 620aa05aa95SBarry Smith } 621aa05aa95SBarry Smith ierr = PetscBinaryWrite(fd,work,m*N,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr); 622aa05aa95SBarry Smith /* get largest work array to receive messages from other processes, excludes process zero */ 623aa05aa95SBarry Smith mmax = 0; 624aa05aa95SBarry Smith for (i=1; i<size; i++) { 625d0f46423SBarry Smith mmax = PetscMax(mmax,mat->rmap->range[i+1] - mat->rmap->range[i]); 626aa05aa95SBarry Smith } 627785e854fSJed Brown ierr = PetscMalloc1(mmax*N,&vv);CHKERRQ(ierr); 628aa05aa95SBarry Smith for (k = 1; k < size; k++) { 629f8009846SMatthew Knepley v = vv; 630d0f46423SBarry Smith m = mat->rmap->range[k+1] - mat->rmap->range[k]; 631ce94432eSBarry Smith ierr = MPIULong_Recv(v,m*N,MPIU_SCALAR,k,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 632aa05aa95SBarry Smith 633aa05aa95SBarry Smith for (j = 0; j < N; j++) { 634aa05aa95SBarry Smith for (i = 0; i < m; i++) { 635578230a0SSatish Balay work[j + i*N] = *v++; 636aa05aa95SBarry Smith } 637aa05aa95SBarry Smith } 638aa05aa95SBarry Smith ierr = PetscBinaryWrite(fd,work,m*N,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr); 639aa05aa95SBarry Smith } 640aa05aa95SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 641578230a0SSatish Balay ierr = PetscFree(vv);CHKERRQ(ierr); 642aa05aa95SBarry Smith } else { 643ce94432eSBarry Smith ierr = MPIULong_Send(a->v,mat->rmap->n*mat->cmap->N,MPIU_SCALAR,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 644aa05aa95SBarry Smith } 645eb3f98d2SBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"To store a parallel dense matrix you must first call PetscViewerSetFormat(viewer,PETSC_VIEWER_NATIVE)"); 646aa05aa95SBarry Smith } 6473a40ed3dSBarry Smith PetscFunctionReturn(0); 6488965ea79SLois Curfman McInnes } 6498965ea79SLois Curfman McInnes 650*7da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqDense(Mat,PetscViewer); 6519804daf3SBarry Smith #include <petscdraw.h> 6524a2ae208SSatish Balay #undef __FUNCT__ 6534a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense_ASCIIorDraworSocket" 6546849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 6558965ea79SLois Curfman McInnes { 65639ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 657dfbe8321SBarry Smith PetscErrorCode ierr; 658*7da1fb6eSBarry Smith PetscMPIInt rank = mdn->rank; 65919fd82e9SBarry Smith PetscViewerType vtype; 660ace3abfcSBarry Smith PetscBool iascii,isdraw; 661b0a32e0cSBarry Smith PetscViewer sviewer; 662f3ef73ceSBarry Smith PetscViewerFormat format; 6638965ea79SLois Curfman McInnes 6643a40ed3dSBarry Smith PetscFunctionBegin; 665251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 666251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 66732077d6dSBarry Smith if (iascii) { 668b0a32e0cSBarry Smith ierr = PetscViewerGetType(viewer,&vtype);CHKERRQ(ierr); 669b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 670456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 6714e220ebcSLois Curfman McInnes MatInfo info; 672888f2ed8SSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 6737b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);CHKERRQ(ierr); 6747b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer," [%d] local rows %D nz %D nz alloced %D mem %D \n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory);CHKERRQ(ierr); 675b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 6767b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);CHKERRQ(ierr); 6775d00a290SHong Zhang ierr = VecScatterView(mdn->Mvctx,viewer);CHKERRQ(ierr); 6783a40ed3dSBarry Smith PetscFunctionReturn(0); 679fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 6803a40ed3dSBarry Smith PetscFunctionReturn(0); 6818965ea79SLois Curfman McInnes } 682f1af5d2fSBarry Smith } else if (isdraw) { 683b0a32e0cSBarry Smith PetscDraw draw; 684ace3abfcSBarry Smith PetscBool isnull; 685f1af5d2fSBarry Smith 686b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 687b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 688f1af5d2fSBarry Smith if (isnull) PetscFunctionReturn(0); 689f1af5d2fSBarry Smith } 69077ed5343SBarry Smith 691*7da1fb6eSBarry Smith { 6928965ea79SLois Curfman McInnes /* assemble the entire matrix onto first processor. */ 6938965ea79SLois Curfman McInnes Mat A; 694d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,m,row,i,nz; 695ba8c8a56SBarry Smith PetscInt *cols; 696ba8c8a56SBarry Smith PetscScalar *vals; 6978965ea79SLois Curfman McInnes 698ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr); 6998965ea79SLois Curfman McInnes if (!rank) { 700f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 7013a40ed3dSBarry Smith } else { 702f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 7038965ea79SLois Curfman McInnes } 7047adad957SLisandro Dalcin /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */ 705878740d9SKris Buschelman ierr = MatSetType(A,MATMPIDENSE);CHKERRQ(ierr); 7060298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(A,NULL);CHKERRQ(ierr); 7073bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr); 7088965ea79SLois Curfman McInnes 70939ddd567SLois Curfman McInnes /* Copy the matrix ... This isn't the most efficient means, 71039ddd567SLois Curfman McInnes but it's quick for now */ 71151022da4SBarry Smith A->insertmode = INSERT_VALUES; 7122205254eSKarl Rupp 7132205254eSKarl Rupp row = mat->rmap->rstart; 7142205254eSKarl Rupp m = mdn->A->rmap->n; 7158965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 716ba8c8a56SBarry Smith ierr = MatGetRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 717ba8c8a56SBarry Smith ierr = MatSetValues_MPIDense(A,1,&row,nz,cols,vals,INSERT_VALUES);CHKERRQ(ierr); 718ba8c8a56SBarry Smith ierr = MatRestoreRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 71939ddd567SLois Curfman McInnes row++; 7208965ea79SLois Curfman McInnes } 7218965ea79SLois Curfman McInnes 7226d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 7236d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 724b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 725b9b97703SBarry Smith if (!rank) { 726*7da1fb6eSBarry Smith ierr = MatView_SeqDense(((Mat_MPIDense*)(A->data))->A,sviewer);CHKERRQ(ierr); 7278965ea79SLois Curfman McInnes } 728b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 729b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 7306bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 7318965ea79SLois Curfman McInnes } 7323a40ed3dSBarry Smith PetscFunctionReturn(0); 7338965ea79SLois Curfman McInnes } 7348965ea79SLois Curfman McInnes 7354a2ae208SSatish Balay #undef __FUNCT__ 7364a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIDense" 737dfbe8321SBarry Smith PetscErrorCode MatView_MPIDense(Mat mat,PetscViewer viewer) 7388965ea79SLois Curfman McInnes { 739dfbe8321SBarry Smith PetscErrorCode ierr; 740ace3abfcSBarry Smith PetscBool iascii,isbinary,isdraw,issocket; 7418965ea79SLois Curfman McInnes 742433994e6SBarry Smith PetscFunctionBegin; 743251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 744251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 745251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 746251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 7470f5bd95cSBarry Smith 74832077d6dSBarry Smith if (iascii || issocket || isdraw) { 749f1af5d2fSBarry Smith ierr = MatView_MPIDense_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 7500f5bd95cSBarry Smith } else if (isbinary) { 7513a40ed3dSBarry Smith ierr = MatView_MPIDense_Binary(mat,viewer);CHKERRQ(ierr); 75211aeaf0aSBarry Smith } 7533a40ed3dSBarry Smith PetscFunctionReturn(0); 7548965ea79SLois Curfman McInnes } 7558965ea79SLois Curfman McInnes 7564a2ae208SSatish Balay #undef __FUNCT__ 7574a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIDense" 758dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info) 7598965ea79SLois Curfman McInnes { 7603501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 7613501a2bdSLois Curfman McInnes Mat mdn = mat->A; 762dfbe8321SBarry Smith PetscErrorCode ierr; 763329f5518SBarry Smith PetscReal isend[5],irecv[5]; 7648965ea79SLois Curfman McInnes 7653a40ed3dSBarry Smith PetscFunctionBegin; 7664e220ebcSLois Curfman McInnes info->block_size = 1.0; 7672205254eSKarl Rupp 7684e220ebcSLois Curfman McInnes ierr = MatGetInfo(mdn,MAT_LOCAL,info);CHKERRQ(ierr); 7692205254eSKarl Rupp 7704e220ebcSLois Curfman McInnes isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 7714e220ebcSLois Curfman McInnes isend[3] = info->memory; isend[4] = info->mallocs; 7728965ea79SLois Curfman McInnes if (flag == MAT_LOCAL) { 7734e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 7744e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 7754e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 7764e220ebcSLois Curfman McInnes info->memory = isend[3]; 7774e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 7788965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 779ce94432eSBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 7802205254eSKarl Rupp 7814e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7824e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7834e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7844e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7854e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7868965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 787ce94432eSBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 7882205254eSKarl Rupp 7894e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7904e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7914e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7924e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7934e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7948965ea79SLois Curfman McInnes } 7954e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 7964e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 7974e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 7983a40ed3dSBarry Smith PetscFunctionReturn(0); 7998965ea79SLois Curfman McInnes } 8008965ea79SLois Curfman McInnes 8014a2ae208SSatish Balay #undef __FUNCT__ 8024a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIDense" 803ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIDense(Mat A,MatOption op,PetscBool flg) 8048965ea79SLois Curfman McInnes { 80539ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 806dfbe8321SBarry Smith PetscErrorCode ierr; 8078965ea79SLois Curfman McInnes 8083a40ed3dSBarry Smith PetscFunctionBegin; 80912c028f9SKris Buschelman switch (op) { 810512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 81112c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 81212c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 8134e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 81412c028f9SKris Buschelman break; 81512c028f9SKris Buschelman case MAT_ROW_ORIENTED: 8164e0d8c25SBarry Smith a->roworiented = flg; 8172205254eSKarl Rupp 8184e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 81912c028f9SKris Buschelman break; 8204e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 82113fa8e87SLisandro Dalcin case MAT_KEEP_NONZERO_PATTERN: 82212c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 823290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 82412c028f9SKris Buschelman break; 82512c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 8264e0d8c25SBarry Smith a->donotstash = flg; 82712c028f9SKris Buschelman break; 82877e54ba9SKris Buschelman case MAT_SYMMETRIC: 82977e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 8309a4540c5SBarry Smith case MAT_HERMITIAN: 8319a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 832600fe468SBarry Smith case MAT_IGNORE_LOWER_TRIANGULAR: 833290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 83477e54ba9SKris Buschelman break; 83512c028f9SKris Buschelman default: 836e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %s",MatOptions[op]); 8373a40ed3dSBarry Smith } 8383a40ed3dSBarry Smith PetscFunctionReturn(0); 8398965ea79SLois Curfman McInnes } 8408965ea79SLois Curfman McInnes 8418965ea79SLois Curfman McInnes 8424a2ae208SSatish Balay #undef __FUNCT__ 8434a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIDense" 844dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIDense(Mat A,Vec ll,Vec rr) 8455b2fa520SLois Curfman McInnes { 8465b2fa520SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 8475b2fa520SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)mdn->A->data; 84887828ca2SBarry Smith PetscScalar *l,*r,x,*v; 849dfbe8321SBarry Smith PetscErrorCode ierr; 850d0f46423SBarry Smith PetscInt i,j,s2a,s3a,s2,s3,m=mdn->A->rmap->n,n=mdn->A->cmap->n; 8515b2fa520SLois Curfman McInnes 8525b2fa520SLois Curfman McInnes PetscFunctionBegin; 85372d926a5SLois Curfman McInnes ierr = MatGetLocalSize(A,&s2,&s3);CHKERRQ(ierr); 8545b2fa520SLois Curfman McInnes if (ll) { 85572d926a5SLois Curfman McInnes ierr = VecGetLocalSize(ll,&s2a);CHKERRQ(ierr); 856e32f2f54SBarry Smith if (s2a != s2) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vector non-conforming local size, %d != %d.", s2a, s2); 8571ebc52fbSHong Zhang ierr = VecGetArray(ll,&l);CHKERRQ(ierr); 8585b2fa520SLois Curfman McInnes for (i=0; i<m; i++) { 8595b2fa520SLois Curfman McInnes x = l[i]; 8605b2fa520SLois Curfman McInnes v = mat->v + i; 8615b2fa520SLois Curfman McInnes for (j=0; j<n; j++) { (*v) *= x; v+= m;} 8625b2fa520SLois Curfman McInnes } 8631ebc52fbSHong Zhang ierr = VecRestoreArray(ll,&l);CHKERRQ(ierr); 864efee365bSSatish Balay ierr = PetscLogFlops(n*m);CHKERRQ(ierr); 8655b2fa520SLois Curfman McInnes } 8665b2fa520SLois Curfman McInnes if (rr) { 867175be7b4SMatthew Knepley ierr = VecGetLocalSize(rr,&s3a);CHKERRQ(ierr); 868e32f2f54SBarry Smith if (s3a != s3) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vec non-conforming local size, %d != %d.", s3a, s3); 869ca9f406cSSatish Balay ierr = VecScatterBegin(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 870ca9f406cSSatish Balay ierr = VecScatterEnd(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 8711ebc52fbSHong Zhang ierr = VecGetArray(mdn->lvec,&r);CHKERRQ(ierr); 8725b2fa520SLois Curfman McInnes for (i=0; i<n; i++) { 8735b2fa520SLois Curfman McInnes x = r[i]; 8745b2fa520SLois Curfman McInnes v = mat->v + i*m; 8752205254eSKarl Rupp for (j=0; j<m; j++) (*v++) *= x; 8765b2fa520SLois Curfman McInnes } 8771ebc52fbSHong Zhang ierr = VecRestoreArray(mdn->lvec,&r);CHKERRQ(ierr); 878efee365bSSatish Balay ierr = PetscLogFlops(n*m);CHKERRQ(ierr); 8795b2fa520SLois Curfman McInnes } 8805b2fa520SLois Curfman McInnes PetscFunctionReturn(0); 8815b2fa520SLois Curfman McInnes } 8825b2fa520SLois Curfman McInnes 8834a2ae208SSatish Balay #undef __FUNCT__ 8844a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIDense" 885dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIDense(Mat A,NormType type,PetscReal *nrm) 886096963f5SLois Curfman McInnes { 8873501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 8883501a2bdSLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)mdn->A->data; 889dfbe8321SBarry Smith PetscErrorCode ierr; 89013f74950SBarry Smith PetscInt i,j; 891329f5518SBarry Smith PetscReal sum = 0.0; 89287828ca2SBarry Smith PetscScalar *v = mat->v; 8933501a2bdSLois Curfman McInnes 8943a40ed3dSBarry Smith PetscFunctionBegin; 8953501a2bdSLois Curfman McInnes if (mdn->size == 1) { 896064f8208SBarry Smith ierr = MatNorm(mdn->A,type,nrm);CHKERRQ(ierr); 8973501a2bdSLois Curfman McInnes } else { 8983501a2bdSLois Curfman McInnes if (type == NORM_FROBENIUS) { 899d0f46423SBarry Smith for (i=0; i<mdn->A->cmap->n*mdn->A->rmap->n; i++) { 900329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 9013501a2bdSLois Curfman McInnes } 902ce94432eSBarry Smith ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 9038f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 904dc0b31edSSatish Balay ierr = PetscLogFlops(2.0*mdn->A->cmap->n*mdn->A->rmap->n);CHKERRQ(ierr); 9053a40ed3dSBarry Smith } else if (type == NORM_1) { 906329f5518SBarry Smith PetscReal *tmp,*tmp2; 907dcca6d9dSJed Brown ierr = PetscMalloc2(A->cmap->N,&tmp,A->cmap->N,&tmp2);CHKERRQ(ierr); 90874ed9c26SBarry Smith ierr = PetscMemzero(tmp,A->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 90974ed9c26SBarry Smith ierr = PetscMemzero(tmp2,A->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 910064f8208SBarry Smith *nrm = 0.0; 9113501a2bdSLois Curfman McInnes v = mat->v; 912d0f46423SBarry Smith for (j=0; j<mdn->A->cmap->n; j++) { 913d0f46423SBarry Smith for (i=0; i<mdn->A->rmap->n; i++) { 91467e560aaSBarry Smith tmp[j] += PetscAbsScalar(*v); v++; 9153501a2bdSLois Curfman McInnes } 9163501a2bdSLois Curfman McInnes } 917ce94432eSBarry Smith ierr = MPI_Allreduce(tmp,tmp2,A->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 918d0f46423SBarry Smith for (j=0; j<A->cmap->N; j++) { 919064f8208SBarry Smith if (tmp2[j] > *nrm) *nrm = tmp2[j]; 9203501a2bdSLois Curfman McInnes } 92174ed9c26SBarry Smith ierr = PetscFree2(tmp,tmp);CHKERRQ(ierr); 922d0f46423SBarry Smith ierr = PetscLogFlops(A->cmap->n*A->rmap->n);CHKERRQ(ierr); 9233a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 924329f5518SBarry Smith PetscReal ntemp; 9253501a2bdSLois Curfman McInnes ierr = MatNorm(mdn->A,type,&ntemp);CHKERRQ(ierr); 926ce94432eSBarry Smith ierr = MPI_Allreduce(&ntemp,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 927ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"No support for two norm"); 9283501a2bdSLois Curfman McInnes } 9293a40ed3dSBarry Smith PetscFunctionReturn(0); 9303501a2bdSLois Curfman McInnes } 9313501a2bdSLois Curfman McInnes 9324a2ae208SSatish Balay #undef __FUNCT__ 9334a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPIDense" 934fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIDense(Mat A,MatReuse reuse,Mat *matout) 9353501a2bdSLois Curfman McInnes { 9363501a2bdSLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 9373501a2bdSLois Curfman McInnes Mat_SeqDense *Aloc = (Mat_SeqDense*)a->A->data; 9383501a2bdSLois Curfman McInnes Mat B; 939d0f46423SBarry Smith PetscInt M = A->rmap->N,N = A->cmap->N,m,n,*rwork,rstart = A->rmap->rstart; 9406849ba73SBarry Smith PetscErrorCode ierr; 94113f74950SBarry Smith PetscInt j,i; 94287828ca2SBarry Smith PetscScalar *v; 9433501a2bdSLois Curfman McInnes 9443a40ed3dSBarry Smith PetscFunctionBegin; 945ce94432eSBarry Smith if (reuse == MAT_REUSE_MATRIX && A == *matout && M != N) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Supports square matrix only in-place"); 946fc4dec0aSBarry Smith if (reuse == MAT_INITIAL_MATRIX || A == *matout) { 947ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 948d0f46423SBarry Smith ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr); 9497adad957SLisandro Dalcin ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr); 9500298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(B,NULL);CHKERRQ(ierr); 951fc4dec0aSBarry Smith } else { 952fc4dec0aSBarry Smith B = *matout; 953fc4dec0aSBarry Smith } 9543501a2bdSLois Curfman McInnes 955d0f46423SBarry Smith m = a->A->rmap->n; n = a->A->cmap->n; v = Aloc->v; 956785e854fSJed Brown ierr = PetscMalloc1(m,&rwork);CHKERRQ(ierr); 9573501a2bdSLois Curfman McInnes for (i=0; i<m; i++) rwork[i] = rstart + i; 9581acff37aSSatish Balay for (j=0; j<n; j++) { 9593501a2bdSLois Curfman McInnes ierr = MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES);CHKERRQ(ierr); 9603501a2bdSLois Curfman McInnes v += m; 9613501a2bdSLois Curfman McInnes } 962606d414cSSatish Balay ierr = PetscFree(rwork);CHKERRQ(ierr); 9636d4a8577SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 9646d4a8577SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 965815cbec1SBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout != A) { 9663501a2bdSLois Curfman McInnes *matout = B; 9673501a2bdSLois Curfman McInnes } else { 968eb6b5d47SBarry Smith ierr = MatHeaderMerge(A,B);CHKERRQ(ierr); 9693501a2bdSLois Curfman McInnes } 9703a40ed3dSBarry Smith PetscFunctionReturn(0); 971096963f5SLois Curfman McInnes } 972096963f5SLois Curfman McInnes 97344cd7ae7SLois Curfman McInnes 9746849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat*); 975d84338a6SBarry Smith extern PetscErrorCode MatScale_MPIDense(Mat,PetscScalar); 9768965ea79SLois Curfman McInnes 9774a2ae208SSatish Balay #undef __FUNCT__ 9784994cf47SJed Brown #define __FUNCT__ "MatSetUp_MPIDense" 9794994cf47SJed Brown PetscErrorCode MatSetUp_MPIDense(Mat A) 980273d9f13SBarry Smith { 981dfbe8321SBarry Smith PetscErrorCode ierr; 982273d9f13SBarry Smith 983273d9f13SBarry Smith PetscFunctionBegin; 984273d9f13SBarry Smith ierr = MatMPIDenseSetPreallocation(A,0);CHKERRQ(ierr); 985273d9f13SBarry Smith PetscFunctionReturn(0); 986273d9f13SBarry Smith } 987273d9f13SBarry Smith 98830716080SHong Zhang #undef __FUNCT__ 989488007eeSBarry Smith #define __FUNCT__ "MatAXPY_MPIDense" 990488007eeSBarry Smith PetscErrorCode MatAXPY_MPIDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str) 991488007eeSBarry Smith { 992488007eeSBarry Smith PetscErrorCode ierr; 993488007eeSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)Y->data, *B = (Mat_MPIDense*)X->data; 994488007eeSBarry Smith 995488007eeSBarry Smith PetscFunctionBegin; 996488007eeSBarry Smith ierr = MatAXPY(A->A,alpha,B->A,str);CHKERRQ(ierr); 997488007eeSBarry Smith PetscFunctionReturn(0); 998488007eeSBarry Smith } 999488007eeSBarry Smith 1000ba337c44SJed Brown #undef __FUNCT__ 1001ba337c44SJed Brown #define __FUNCT__ "MatConjugate_MPIDense" 10027087cfbeSBarry Smith PetscErrorCode MatConjugate_MPIDense(Mat mat) 1003ba337c44SJed Brown { 1004ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)mat->data; 1005ba337c44SJed Brown PetscErrorCode ierr; 1006ba337c44SJed Brown 1007ba337c44SJed Brown PetscFunctionBegin; 1008ba337c44SJed Brown ierr = MatConjugate(a->A);CHKERRQ(ierr); 1009ba337c44SJed Brown PetscFunctionReturn(0); 1010ba337c44SJed Brown } 1011ba337c44SJed Brown 1012ba337c44SJed Brown #undef __FUNCT__ 1013ba337c44SJed Brown #define __FUNCT__ "MatRealPart_MPIDense" 1014ba337c44SJed Brown PetscErrorCode MatRealPart_MPIDense(Mat A) 1015ba337c44SJed Brown { 1016ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1017ba337c44SJed Brown PetscErrorCode ierr; 1018ba337c44SJed Brown 1019ba337c44SJed Brown PetscFunctionBegin; 1020ba337c44SJed Brown ierr = MatRealPart(a->A);CHKERRQ(ierr); 1021ba337c44SJed Brown PetscFunctionReturn(0); 1022ba337c44SJed Brown } 1023ba337c44SJed Brown 1024ba337c44SJed Brown #undef __FUNCT__ 1025ba337c44SJed Brown #define __FUNCT__ "MatImaginaryPart_MPIDense" 1026ba337c44SJed Brown PetscErrorCode MatImaginaryPart_MPIDense(Mat A) 1027ba337c44SJed Brown { 1028ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1029ba337c44SJed Brown PetscErrorCode ierr; 1030ba337c44SJed Brown 1031ba337c44SJed Brown PetscFunctionBegin; 1032ba337c44SJed Brown ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 1033ba337c44SJed Brown PetscFunctionReturn(0); 1034ba337c44SJed Brown } 1035ba337c44SJed Brown 10360716a85fSBarry Smith extern PetscErrorCode MatGetColumnNorms_SeqDense(Mat,NormType,PetscReal*); 10370716a85fSBarry Smith #undef __FUNCT__ 10380716a85fSBarry Smith #define __FUNCT__ "MatGetColumnNorms_MPIDense" 10390716a85fSBarry Smith PetscErrorCode MatGetColumnNorms_MPIDense(Mat A,NormType type,PetscReal *norms) 10400716a85fSBarry Smith { 10410716a85fSBarry Smith PetscErrorCode ierr; 10420716a85fSBarry Smith PetscInt i,n; 10430716a85fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*) A->data; 10440716a85fSBarry Smith PetscReal *work; 10450716a85fSBarry Smith 10460716a85fSBarry Smith PetscFunctionBegin; 10470298fd71SBarry Smith ierr = MatGetSize(A,NULL,&n);CHKERRQ(ierr); 1048785e854fSJed Brown ierr = PetscMalloc1(n,&work);CHKERRQ(ierr); 10490716a85fSBarry Smith ierr = MatGetColumnNorms_SeqDense(a->A,type,work);CHKERRQ(ierr); 10500716a85fSBarry Smith if (type == NORM_2) { 10510716a85fSBarry Smith for (i=0; i<n; i++) work[i] *= work[i]; 10520716a85fSBarry Smith } 10530716a85fSBarry Smith if (type == NORM_INFINITY) { 10540716a85fSBarry Smith ierr = MPI_Allreduce(work,norms,n,MPIU_REAL,MPIU_MAX,A->hdr.comm);CHKERRQ(ierr); 10550716a85fSBarry Smith } else { 10560716a85fSBarry Smith ierr = MPI_Allreduce(work,norms,n,MPIU_REAL,MPIU_SUM,A->hdr.comm);CHKERRQ(ierr); 10570716a85fSBarry Smith } 10580716a85fSBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 10590716a85fSBarry Smith if (type == NORM_2) { 10608f1a2a5eSBarry Smith for (i=0; i<n; i++) norms[i] = PetscSqrtReal(norms[i]); 10610716a85fSBarry Smith } 10620716a85fSBarry Smith PetscFunctionReturn(0); 10630716a85fSBarry Smith } 10640716a85fSBarry Smith 106573a71a0fSBarry Smith #undef __FUNCT__ 106673a71a0fSBarry Smith #define __FUNCT__ "MatSetRandom_MPIDense" 106773a71a0fSBarry Smith static PetscErrorCode MatSetRandom_MPIDense(Mat x,PetscRandom rctx) 106873a71a0fSBarry Smith { 106973a71a0fSBarry Smith Mat_MPIDense *d = (Mat_MPIDense*)x->data; 107073a71a0fSBarry Smith PetscErrorCode ierr; 107173a71a0fSBarry Smith PetscScalar *a; 107273a71a0fSBarry Smith PetscInt m,n,i; 107373a71a0fSBarry Smith 107473a71a0fSBarry Smith PetscFunctionBegin; 107573a71a0fSBarry Smith ierr = MatGetSize(d->A,&m,&n);CHKERRQ(ierr); 10768c778c55SBarry Smith ierr = MatDenseGetArray(d->A,&a);CHKERRQ(ierr); 107773a71a0fSBarry Smith for (i=0; i<m*n; i++) { 107873a71a0fSBarry Smith ierr = PetscRandomGetValue(rctx,a+i);CHKERRQ(ierr); 107973a71a0fSBarry Smith } 10808c778c55SBarry Smith ierr = MatDenseRestoreArray(d->A,&a);CHKERRQ(ierr); 108173a71a0fSBarry Smith PetscFunctionReturn(0); 108273a71a0fSBarry Smith } 108373a71a0fSBarry Smith 10848965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/ 108509dc0095SBarry Smith static struct _MatOps MatOps_Values = { MatSetValues_MPIDense, 108609dc0095SBarry Smith MatGetRow_MPIDense, 108709dc0095SBarry Smith MatRestoreRow_MPIDense, 108809dc0095SBarry Smith MatMult_MPIDense, 108997304618SKris Buschelman /* 4*/ MatMultAdd_MPIDense, 10907c922b88SBarry Smith MatMultTranspose_MPIDense, 10917c922b88SBarry Smith MatMultTransposeAdd_MPIDense, 10928965ea79SLois Curfman McInnes 0, 109309dc0095SBarry Smith 0, 109409dc0095SBarry Smith 0, 109597304618SKris Buschelman /* 10*/ 0, 109609dc0095SBarry Smith 0, 109709dc0095SBarry Smith 0, 109809dc0095SBarry Smith 0, 109909dc0095SBarry Smith MatTranspose_MPIDense, 110097304618SKris Buschelman /* 15*/ MatGetInfo_MPIDense, 11016e4ee0c6SHong Zhang MatEqual_MPIDense, 110209dc0095SBarry Smith MatGetDiagonal_MPIDense, 11035b2fa520SLois Curfman McInnes MatDiagonalScale_MPIDense, 110409dc0095SBarry Smith MatNorm_MPIDense, 110597304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPIDense, 110609dc0095SBarry Smith MatAssemblyEnd_MPIDense, 110709dc0095SBarry Smith MatSetOption_MPIDense, 110809dc0095SBarry Smith MatZeroEntries_MPIDense, 1109d519adbfSMatthew Knepley /* 24*/ MatZeroRows_MPIDense, 1110919b68f7SBarry Smith 0, 111101b82886SBarry Smith 0, 111201b82886SBarry Smith 0, 111301b82886SBarry Smith 0, 11144994cf47SJed Brown /* 29*/ MatSetUp_MPIDense, 1115273d9f13SBarry Smith 0, 111609dc0095SBarry Smith 0, 11178c778c55SBarry Smith 0, 11188c778c55SBarry Smith 0, 1119d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPIDense, 112009dc0095SBarry Smith 0, 112109dc0095SBarry Smith 0, 112209dc0095SBarry Smith 0, 112309dc0095SBarry Smith 0, 1124d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPIDense, 11252ce60cd0SSatish Balay MatGetSubMatrices_MPIDense, 112609dc0095SBarry Smith 0, 112709dc0095SBarry Smith MatGetValues_MPIDense, 112809dc0095SBarry Smith 0, 1129d519adbfSMatthew Knepley /* 44*/ 0, 113009dc0095SBarry Smith MatScale_MPIDense, 113109dc0095SBarry Smith 0, 113209dc0095SBarry Smith 0, 113309dc0095SBarry Smith 0, 113473a71a0fSBarry Smith /* 49*/ MatSetRandom_MPIDense, 113509dc0095SBarry Smith 0, 113609dc0095SBarry Smith 0, 113709dc0095SBarry Smith 0, 113809dc0095SBarry Smith 0, 1139d519adbfSMatthew Knepley /* 54*/ 0, 114009dc0095SBarry Smith 0, 114109dc0095SBarry Smith 0, 114209dc0095SBarry Smith 0, 114309dc0095SBarry Smith 0, 1144d519adbfSMatthew Knepley /* 59*/ MatGetSubMatrix_MPIDense, 1145b9b97703SBarry Smith MatDestroy_MPIDense, 1146b9b97703SBarry Smith MatView_MPIDense, 1147357abbc8SBarry Smith 0, 114897304618SKris Buschelman 0, 1149d519adbfSMatthew Knepley /* 64*/ 0, 115097304618SKris Buschelman 0, 115197304618SKris Buschelman 0, 115297304618SKris Buschelman 0, 115397304618SKris Buschelman 0, 1154d519adbfSMatthew Knepley /* 69*/ 0, 115597304618SKris Buschelman 0, 115697304618SKris Buschelman 0, 115797304618SKris Buschelman 0, 115897304618SKris Buschelman 0, 1159d519adbfSMatthew Knepley /* 74*/ 0, 116097304618SKris Buschelman 0, 116197304618SKris Buschelman 0, 116297304618SKris Buschelman 0, 116397304618SKris Buschelman 0, 1164d519adbfSMatthew Knepley /* 79*/ 0, 116597304618SKris Buschelman 0, 116697304618SKris Buschelman 0, 116797304618SKris Buschelman 0, 11685bba2384SShri Abhyankar /* 83*/ MatLoad_MPIDense, 1169865e5f61SKris Buschelman 0, 1170865e5f61SKris Buschelman 0, 1171865e5f61SKris Buschelman 0, 1172865e5f61SKris Buschelman 0, 1173865e5f61SKris Buschelman 0, 1174d519adbfSMatthew Knepley /* 89*/ 1175865e5f61SKris Buschelman 0, 1176865e5f61SKris Buschelman 0, 1177865e5f61SKris Buschelman 0, 11782fbe02b9SBarry Smith 0, 1179ba337c44SJed Brown 0, 1180d519adbfSMatthew Knepley /* 94*/ 0, 1181865e5f61SKris Buschelman 0, 1182865e5f61SKris Buschelman 0, 1183ba337c44SJed Brown 0, 1184ba337c44SJed Brown 0, 1185ba337c44SJed Brown /* 99*/ 0, 1186ba337c44SJed Brown 0, 1187ba337c44SJed Brown 0, 1188ba337c44SJed Brown MatConjugate_MPIDense, 1189ba337c44SJed Brown 0, 1190ba337c44SJed Brown /*104*/ 0, 1191ba337c44SJed Brown MatRealPart_MPIDense, 1192ba337c44SJed Brown MatImaginaryPart_MPIDense, 119386d161a7SShri Abhyankar 0, 119486d161a7SShri Abhyankar 0, 119586d161a7SShri Abhyankar /*109*/ 0, 119686d161a7SShri Abhyankar 0, 119786d161a7SShri Abhyankar 0, 119886d161a7SShri Abhyankar 0, 119986d161a7SShri Abhyankar 0, 120086d161a7SShri Abhyankar /*114*/ 0, 120186d161a7SShri Abhyankar 0, 120286d161a7SShri Abhyankar 0, 120386d161a7SShri Abhyankar 0, 120486d161a7SShri Abhyankar 0, 120586d161a7SShri Abhyankar /*119*/ 0, 120686d161a7SShri Abhyankar 0, 120786d161a7SShri Abhyankar 0, 12080716a85fSBarry Smith 0, 12090716a85fSBarry Smith 0, 12100716a85fSBarry Smith /*124*/ 0, 12113964eb88SJed Brown MatGetColumnNorms_MPIDense, 12123964eb88SJed Brown 0, 12133964eb88SJed Brown 0, 12143964eb88SJed Brown 0, 12153964eb88SJed Brown /*129*/ 0, 12163964eb88SJed Brown 0, 12173964eb88SJed Brown 0, 12183964eb88SJed Brown 0, 12193964eb88SJed Brown 0, 12203964eb88SJed Brown /*134*/ 0, 12213964eb88SJed Brown 0, 12223964eb88SJed Brown 0, 12233964eb88SJed Brown 0, 12243964eb88SJed Brown 0, 12253964eb88SJed Brown /*139*/ 0, 1226f9426fe0SMark Adams 0, 12273964eb88SJed Brown 0 1228ba337c44SJed Brown }; 12298965ea79SLois Curfman McInnes 12304a2ae208SSatish Balay #undef __FUNCT__ 1231a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIDenseSetPreallocation_MPIDense" 12327087cfbeSBarry Smith PetscErrorCode MatMPIDenseSetPreallocation_MPIDense(Mat mat,PetscScalar *data) 1233a23d5eceSKris Buschelman { 1234a23d5eceSKris Buschelman Mat_MPIDense *a; 1235dfbe8321SBarry Smith PetscErrorCode ierr; 1236a23d5eceSKris Buschelman 1237a23d5eceSKris Buschelman PetscFunctionBegin; 1238a23d5eceSKris Buschelman mat->preallocated = PETSC_TRUE; 1239a23d5eceSKris Buschelman /* Note: For now, when data is specified above, this assumes the user correctly 1240a23d5eceSKris Buschelman allocates the local dense storage space. We should add error checking. */ 1241a23d5eceSKris Buschelman 1242a23d5eceSKris Buschelman a = (Mat_MPIDense*)mat->data; 124334ef9618SShri Abhyankar ierr = PetscLayoutSetUp(mat->rmap);CHKERRQ(ierr); 124434ef9618SShri Abhyankar ierr = PetscLayoutSetUp(mat->cmap);CHKERRQ(ierr); 124534ef9618SShri Abhyankar a->nvec = mat->cmap->n; 124634ef9618SShri Abhyankar 1247f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&a->A);CHKERRQ(ierr); 1248d0f46423SBarry Smith ierr = MatSetSizes(a->A,mat->rmap->n,mat->cmap->N,mat->rmap->n,mat->cmap->N);CHKERRQ(ierr); 12495c5985e7SKris Buschelman ierr = MatSetType(a->A,MATSEQDENSE);CHKERRQ(ierr); 12505c5985e7SKris Buschelman ierr = MatSeqDenseSetPreallocation(a->A,data);CHKERRQ(ierr); 12513bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 1252a23d5eceSKris Buschelman PetscFunctionReturn(0); 1253a23d5eceSKris Buschelman } 1254a23d5eceSKris Buschelman 1255a23d5eceSKris Buschelman #undef __FUNCT__ 12564a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIDense" 12578cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIDense(Mat mat) 1258273d9f13SBarry Smith { 1259273d9f13SBarry Smith Mat_MPIDense *a; 1260dfbe8321SBarry Smith PetscErrorCode ierr; 1261273d9f13SBarry Smith 1262273d9f13SBarry Smith PetscFunctionBegin; 1263b00a9115SJed Brown ierr = PetscNewLog(mat,&a);CHKERRQ(ierr); 1264b0a32e0cSBarry Smith mat->data = (void*)a; 1265273d9f13SBarry Smith ierr = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1266273d9f13SBarry Smith 1267273d9f13SBarry Smith mat->insertmode = NOT_SET_VALUES; 1268ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&a->rank);CHKERRQ(ierr); 1269ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&a->size);CHKERRQ(ierr); 1270273d9f13SBarry Smith 1271273d9f13SBarry Smith /* build cache for off array entries formed */ 1272273d9f13SBarry Smith a->donotstash = PETSC_FALSE; 12732205254eSKarl Rupp 1274ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)mat),1,&mat->stash);CHKERRQ(ierr); 1275273d9f13SBarry Smith 1276273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 1277273d9f13SBarry Smith a->lvec = 0; 1278273d9f13SBarry Smith a->Mvctx = 0; 1279273d9f13SBarry Smith a->roworiented = PETSC_TRUE; 1280273d9f13SBarry Smith 1281bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",MatDenseGetArray_MPIDense);CHKERRQ(ierr); 1282bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",MatDenseRestoreArray_MPIDense);CHKERRQ(ierr); 12838c778c55SBarry Smith 1284bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C",MatGetDiagonalBlock_MPIDense);CHKERRQ(ierr); 1285bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",MatMPIDenseSetPreallocation_MPIDense);CHKERRQ(ierr); 1286bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMult_mpiaij_mpidense_C",MatMatMult_MPIAIJ_MPIDense);CHKERRQ(ierr); 1287bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C",MatMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr); 1288bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C",MatMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr); 12898949adfdSHong Zhang 12908949adfdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMult_mpiaij_mpidense_C",MatTransposeMatMult_MPIAIJ_MPIDense);CHKERRQ(ierr); 12918949adfdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultSymbolic_mpiaij_mpidense_C",MatTransposeMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr); 12928949adfdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultNumeric_mpiaij_mpidense_C",MatTransposeMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr); 129338aed534SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)mat,MATMPIDENSE);CHKERRQ(ierr); 1294273d9f13SBarry Smith PetscFunctionReturn(0); 1295273d9f13SBarry Smith } 1296273d9f13SBarry Smith 1297209238afSKris Buschelman /*MC 1298002d173eSKris Buschelman MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices. 1299209238afSKris Buschelman 1300209238afSKris Buschelman This matrix type is identical to MATSEQDENSE when constructed with a single process communicator, 1301209238afSKris Buschelman and MATMPIDENSE otherwise. 1302209238afSKris Buschelman 1303209238afSKris Buschelman Options Database Keys: 1304209238afSKris Buschelman . -mat_type dense - sets the matrix type to "dense" during a call to MatSetFromOptions() 1305209238afSKris Buschelman 1306209238afSKris Buschelman Level: beginner 1307209238afSKris Buschelman 130801b82886SBarry Smith 1309209238afSKris Buschelman .seealso: MatCreateMPIDense,MATSEQDENSE,MATMPIDENSE 1310209238afSKris Buschelman M*/ 1311209238afSKris Buschelman 13124a2ae208SSatish Balay #undef __FUNCT__ 13134a2ae208SSatish Balay #define __FUNCT__ "MatMPIDenseSetPreallocation" 1314273d9f13SBarry Smith /*@C 1315273d9f13SBarry Smith MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries 1316273d9f13SBarry Smith 1317273d9f13SBarry Smith Not collective 1318273d9f13SBarry Smith 1319273d9f13SBarry Smith Input Parameters: 1320273d9f13SBarry Smith . A - the matrix 13210298fd71SBarry Smith - data - optional location of matrix data. Set data=NULL for PETSc 1322273d9f13SBarry Smith to control all matrix memory allocation. 1323273d9f13SBarry Smith 1324273d9f13SBarry Smith Notes: 1325273d9f13SBarry Smith The dense format is fully compatible with standard Fortran 77 1326273d9f13SBarry Smith storage by columns. 1327273d9f13SBarry Smith 1328273d9f13SBarry Smith The data input variable is intended primarily for Fortran programmers 1329273d9f13SBarry Smith who wish to allocate their own matrix memory space. Most users should 13300298fd71SBarry Smith set data=NULL. 1331273d9f13SBarry Smith 1332273d9f13SBarry Smith Level: intermediate 1333273d9f13SBarry Smith 1334273d9f13SBarry Smith .keywords: matrix,dense, parallel 1335273d9f13SBarry Smith 1336273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 1337273d9f13SBarry Smith @*/ 13387087cfbeSBarry Smith PetscErrorCode MatMPIDenseSetPreallocation(Mat mat,PetscScalar *data) 1339273d9f13SBarry Smith { 13404ac538c5SBarry Smith PetscErrorCode ierr; 1341273d9f13SBarry Smith 1342273d9f13SBarry Smith PetscFunctionBegin; 13434ac538c5SBarry Smith ierr = PetscTryMethod(mat,"MatMPIDenseSetPreallocation_C",(Mat,PetscScalar*),(mat,data));CHKERRQ(ierr); 1344273d9f13SBarry Smith PetscFunctionReturn(0); 1345273d9f13SBarry Smith } 1346273d9f13SBarry Smith 13474a2ae208SSatish Balay #undef __FUNCT__ 134869b1f4b7SBarry Smith #define __FUNCT__ "MatCreateDense" 13498965ea79SLois Curfman McInnes /*@C 135069b1f4b7SBarry Smith MatCreateDense - Creates a parallel matrix in dense format. 13518965ea79SLois Curfman McInnes 1352db81eaa0SLois Curfman McInnes Collective on MPI_Comm 1353db81eaa0SLois Curfman McInnes 13548965ea79SLois Curfman McInnes Input Parameters: 1355db81eaa0SLois Curfman McInnes + comm - MPI communicator 13568965ea79SLois Curfman McInnes . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1357db81eaa0SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 13588965ea79SLois Curfman McInnes . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 1359db81eaa0SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 13600298fd71SBarry Smith - data - optional location of matrix data. Set data=NULL (NULL_SCALAR for Fortran users) for PETSc 1361dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 13628965ea79SLois Curfman McInnes 13638965ea79SLois Curfman McInnes Output Parameter: 1364477f1c0bSLois Curfman McInnes . A - the matrix 13658965ea79SLois Curfman McInnes 1366b259b22eSLois Curfman McInnes Notes: 136739ddd567SLois Curfman McInnes The dense format is fully compatible with standard Fortran 77 136839ddd567SLois Curfman McInnes storage by columns. 13698965ea79SLois Curfman McInnes 137018f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 137118f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 13720298fd71SBarry Smith set data=NULL (NULL_SCALAR for Fortran users). 137318f449edSLois Curfman McInnes 13748965ea79SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 13758965ea79SLois Curfman McInnes (possibly both). 13768965ea79SLois Curfman McInnes 1377027ccd11SLois Curfman McInnes Level: intermediate 1378027ccd11SLois Curfman McInnes 137939ddd567SLois Curfman McInnes .keywords: matrix,dense, parallel 13808965ea79SLois Curfman McInnes 138139ddd567SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 13828965ea79SLois Curfman McInnes @*/ 138369b1f4b7SBarry Smith PetscErrorCode MatCreateDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 13848965ea79SLois Curfman McInnes { 13856849ba73SBarry Smith PetscErrorCode ierr; 138613f74950SBarry Smith PetscMPIInt size; 13878965ea79SLois Curfman McInnes 13883a40ed3dSBarry Smith PetscFunctionBegin; 1389f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 1390f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 1391273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1392273d9f13SBarry Smith if (size > 1) { 1393273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIDENSE);CHKERRQ(ierr); 1394273d9f13SBarry Smith ierr = MatMPIDenseSetPreallocation(*A,data);CHKERRQ(ierr); 1395273d9f13SBarry Smith } else { 1396273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr); 1397273d9f13SBarry Smith ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr); 13988c469469SLois Curfman McInnes } 13993a40ed3dSBarry Smith PetscFunctionReturn(0); 14008965ea79SLois Curfman McInnes } 14018965ea79SLois Curfman McInnes 14024a2ae208SSatish Balay #undef __FUNCT__ 14034a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIDense" 14046849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat) 14058965ea79SLois Curfman McInnes { 14068965ea79SLois Curfman McInnes Mat mat; 14073501a2bdSLois Curfman McInnes Mat_MPIDense *a,*oldmat = (Mat_MPIDense*)A->data; 1408dfbe8321SBarry Smith PetscErrorCode ierr; 14098965ea79SLois Curfman McInnes 14103a40ed3dSBarry Smith PetscFunctionBegin; 14118965ea79SLois Curfman McInnes *newmat = 0; 1412ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&mat);CHKERRQ(ierr); 1413d0f46423SBarry Smith ierr = MatSetSizes(mat,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 14147adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)A)->type_name);CHKERRQ(ierr); 1415834f8fabSBarry Smith a = (Mat_MPIDense*)mat->data; 1416e04c1aa4SHong Zhang ierr = PetscMemcpy(mat->ops,A->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 14175aa7edbeSHong Zhang 1418d5f3da31SBarry Smith mat->factortype = A->factortype; 1419c456f294SBarry Smith mat->assembled = PETSC_TRUE; 1420273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 14218965ea79SLois Curfman McInnes 14228965ea79SLois Curfman McInnes a->size = oldmat->size; 14238965ea79SLois Curfman McInnes a->rank = oldmat->rank; 1424e0fa3b82SLois Curfman McInnes mat->insertmode = NOT_SET_VALUES; 1425b9b97703SBarry Smith a->nvec = oldmat->nvec; 14263782ba37SSatish Balay a->donotstash = oldmat->donotstash; 1427e04c1aa4SHong Zhang 14281e1e43feSBarry Smith ierr = PetscLayoutReference(A->rmap,&mat->rmap);CHKERRQ(ierr); 14291e1e43feSBarry Smith ierr = PetscLayoutReference(A->cmap,&mat->cmap);CHKERRQ(ierr); 14308965ea79SLois Curfman McInnes 1431329f5518SBarry Smith ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 14325609ef8eSBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 14333bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 143401b82886SBarry Smith 14358965ea79SLois Curfman McInnes *newmat = mat; 14363a40ed3dSBarry Smith PetscFunctionReturn(0); 14378965ea79SLois Curfman McInnes } 14388965ea79SLois Curfman McInnes 14394a2ae208SSatish Balay #undef __FUNCT__ 14405bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPIDense_DenseInFile" 14415bba2384SShri Abhyankar PetscErrorCode MatLoad_MPIDense_DenseInFile(MPI_Comm comm,PetscInt fd,PetscInt M,PetscInt N,Mat newmat,PetscInt sizesset) 144286d161a7SShri Abhyankar { 144386d161a7SShri Abhyankar PetscErrorCode ierr; 144486d161a7SShri Abhyankar PetscMPIInt rank,size; 144586d161a7SShri Abhyankar PetscInt *rowners,i,m,nz,j; 144686d161a7SShri Abhyankar PetscScalar *array,*vals,*vals_ptr; 144786d161a7SShri Abhyankar 144886d161a7SShri Abhyankar PetscFunctionBegin; 144986d161a7SShri Abhyankar ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 145086d161a7SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 145186d161a7SShri Abhyankar 145286d161a7SShri Abhyankar /* determine ownership of all rows */ 145386d161a7SShri Abhyankar if (newmat->rmap->n < 0) m = M/size + ((M % size) > rank); 145486d161a7SShri Abhyankar else m = newmat->rmap->n; 1455785e854fSJed Brown ierr = PetscMalloc1((size+2),&rowners);CHKERRQ(ierr); 145686d161a7SShri Abhyankar ierr = MPI_Allgather(&m,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr); 145786d161a7SShri Abhyankar rowners[0] = 0; 145886d161a7SShri Abhyankar for (i=2; i<=size; i++) { 145986d161a7SShri Abhyankar rowners[i] += rowners[i-1]; 146086d161a7SShri Abhyankar } 146186d161a7SShri Abhyankar 146286d161a7SShri Abhyankar if (!sizesset) { 146386d161a7SShri Abhyankar ierr = MatSetSizes(newmat,m,PETSC_DECIDE,M,N);CHKERRQ(ierr); 146486d161a7SShri Abhyankar } 14650298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr); 14668c778c55SBarry Smith ierr = MatDenseGetArray(newmat,&array);CHKERRQ(ierr); 146786d161a7SShri Abhyankar 146886d161a7SShri Abhyankar if (!rank) { 1469785e854fSJed Brown ierr = PetscMalloc1(m*N,&vals);CHKERRQ(ierr); 147086d161a7SShri Abhyankar 147186d161a7SShri Abhyankar /* read in my part of the matrix numerical values */ 147286d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,vals,m*N,PETSC_SCALAR);CHKERRQ(ierr); 147386d161a7SShri Abhyankar 147486d161a7SShri Abhyankar /* insert into matrix-by row (this is why cannot directly read into array */ 147586d161a7SShri Abhyankar vals_ptr = vals; 147686d161a7SShri Abhyankar for (i=0; i<m; i++) { 147786d161a7SShri Abhyankar for (j=0; j<N; j++) { 147886d161a7SShri Abhyankar array[i + j*m] = *vals_ptr++; 147986d161a7SShri Abhyankar } 148086d161a7SShri Abhyankar } 148186d161a7SShri Abhyankar 148286d161a7SShri Abhyankar /* read in other processors and ship out */ 148386d161a7SShri Abhyankar for (i=1; i<size; i++) { 148486d161a7SShri Abhyankar nz = (rowners[i+1] - rowners[i])*N; 148586d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 1486a25532f0SBarry Smith ierr = MPIULong_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)(newmat))->tag,comm);CHKERRQ(ierr); 148786d161a7SShri Abhyankar } 148886d161a7SShri Abhyankar } else { 148986d161a7SShri Abhyankar /* receive numeric values */ 1490785e854fSJed Brown ierr = PetscMalloc1(m*N,&vals);CHKERRQ(ierr); 149186d161a7SShri Abhyankar 149286d161a7SShri Abhyankar /* receive message of values*/ 1493a25532f0SBarry Smith ierr = MPIULong_Recv(vals,m*N,MPIU_SCALAR,0,((PetscObject)(newmat))->tag,comm);CHKERRQ(ierr); 149486d161a7SShri Abhyankar 149586d161a7SShri Abhyankar /* insert into matrix-by row (this is why cannot directly read into array */ 149686d161a7SShri Abhyankar vals_ptr = vals; 149786d161a7SShri Abhyankar for (i=0; i<m; i++) { 149886d161a7SShri Abhyankar for (j=0; j<N; j++) { 149986d161a7SShri Abhyankar array[i + j*m] = *vals_ptr++; 150086d161a7SShri Abhyankar } 150186d161a7SShri Abhyankar } 150286d161a7SShri Abhyankar } 15038c778c55SBarry Smith ierr = MatDenseRestoreArray(newmat,&array);CHKERRQ(ierr); 150486d161a7SShri Abhyankar ierr = PetscFree(rowners);CHKERRQ(ierr); 150586d161a7SShri Abhyankar ierr = PetscFree(vals);CHKERRQ(ierr); 150686d161a7SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 150786d161a7SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 150886d161a7SShri Abhyankar PetscFunctionReturn(0); 150986d161a7SShri Abhyankar } 151086d161a7SShri Abhyankar 151186d161a7SShri Abhyankar #undef __FUNCT__ 15125bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPIDense" 1513112444f4SShri Abhyankar PetscErrorCode MatLoad_MPIDense(Mat newmat,PetscViewer viewer) 151486d161a7SShri Abhyankar { 151586d161a7SShri Abhyankar PetscScalar *vals,*svals; 1516ce94432eSBarry Smith MPI_Comm comm; 151786d161a7SShri Abhyankar MPI_Status status; 151886d161a7SShri Abhyankar PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*rowners,*sndcounts,m,maxnz; 151986d161a7SShri Abhyankar PetscInt header[4],*rowlengths = 0,M,N,*cols; 152086d161a7SShri Abhyankar PetscInt *ourlens,*procsnz = 0,*offlens,jj,*mycols,*smycols; 152186d161a7SShri Abhyankar PetscInt i,nz,j,rstart,rend,sizesset=1,grows,gcols; 152286d161a7SShri Abhyankar int fd; 152386d161a7SShri Abhyankar PetscErrorCode ierr; 152486d161a7SShri Abhyankar 152586d161a7SShri Abhyankar PetscFunctionBegin; 1526ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr); 152786d161a7SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 152886d161a7SShri Abhyankar ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 152986d161a7SShri Abhyankar if (!rank) { 153086d161a7SShri Abhyankar ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 153186d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr); 153286d161a7SShri Abhyankar if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 153386d161a7SShri Abhyankar } 153486d161a7SShri Abhyankar if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) sizesset = 0; 153586d161a7SShri Abhyankar 153686d161a7SShri Abhyankar ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 153786d161a7SShri Abhyankar M = header[1]; N = header[2]; nz = header[3]; 153886d161a7SShri Abhyankar 153986d161a7SShri Abhyankar /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */ 154086d161a7SShri Abhyankar if (sizesset && newmat->rmap->N < 0) newmat->rmap->N = M; 154186d161a7SShri Abhyankar if (sizesset && newmat->cmap->N < 0) newmat->cmap->N = N; 154286d161a7SShri Abhyankar 154386d161a7SShri Abhyankar /* If global sizes are set, check if they are consistent with that given in the file */ 154486d161a7SShri Abhyankar if (sizesset) { 154586d161a7SShri Abhyankar ierr = MatGetSize(newmat,&grows,&gcols);CHKERRQ(ierr); 154686d161a7SShri Abhyankar } 1547abd38a8fSBarry Smith if (sizesset && newmat->rmap->N != grows) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%d) and input matrix has (%d)",M,grows); 1548abd38a8fSBarry Smith if (sizesset && newmat->cmap->N != gcols) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%d) and input matrix has (%d)",N,gcols); 154986d161a7SShri Abhyankar 155086d161a7SShri Abhyankar /* 155186d161a7SShri Abhyankar Handle case where matrix is stored on disk as a dense matrix 155286d161a7SShri Abhyankar */ 155386d161a7SShri Abhyankar if (nz == MATRIX_BINARY_FORMAT_DENSE) { 15545bba2384SShri Abhyankar ierr = MatLoad_MPIDense_DenseInFile(comm,fd,M,N,newmat,sizesset);CHKERRQ(ierr); 155586d161a7SShri Abhyankar PetscFunctionReturn(0); 155686d161a7SShri Abhyankar } 155786d161a7SShri Abhyankar 155886d161a7SShri Abhyankar /* determine ownership of all rows */ 15592205254eSKarl Rupp if (newmat->rmap->n < 0) { 15602205254eSKarl Rupp ierr = PetscMPIIntCast(M/size + ((M % size) > rank),&m);CHKERRQ(ierr); 15612205254eSKarl Rupp } else { 15622205254eSKarl Rupp ierr = PetscMPIIntCast(newmat->rmap->n,&m);CHKERRQ(ierr); 15632205254eSKarl Rupp } 1564785e854fSJed Brown ierr = PetscMalloc1((size+2),&rowners);CHKERRQ(ierr); 156586d161a7SShri Abhyankar ierr = MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 156686d161a7SShri Abhyankar rowners[0] = 0; 156786d161a7SShri Abhyankar for (i=2; i<=size; i++) { 156886d161a7SShri Abhyankar rowners[i] += rowners[i-1]; 156986d161a7SShri Abhyankar } 157086d161a7SShri Abhyankar rstart = rowners[rank]; 157186d161a7SShri Abhyankar rend = rowners[rank+1]; 157286d161a7SShri Abhyankar 157386d161a7SShri Abhyankar /* distribute row lengths to all processors */ 1574dcca6d9dSJed Brown ierr = PetscMalloc2(rend-rstart,&ourlens,rend-rstart,&offlens);CHKERRQ(ierr); 157586d161a7SShri Abhyankar if (!rank) { 1576785e854fSJed Brown ierr = PetscMalloc1(M,&rowlengths);CHKERRQ(ierr); 157786d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 1578785e854fSJed Brown ierr = PetscMalloc1(size,&sndcounts);CHKERRQ(ierr); 157986d161a7SShri Abhyankar for (i=0; i<size; i++) sndcounts[i] = rowners[i+1] - rowners[i]; 158086d161a7SShri Abhyankar ierr = MPI_Scatterv(rowlengths,sndcounts,rowners,MPIU_INT,ourlens,rend-rstart,MPIU_INT,0,comm);CHKERRQ(ierr); 158186d161a7SShri Abhyankar ierr = PetscFree(sndcounts);CHKERRQ(ierr); 158286d161a7SShri Abhyankar } else { 158386d161a7SShri Abhyankar ierr = MPI_Scatterv(0,0,0,MPIU_INT,ourlens,rend-rstart,MPIU_INT,0,comm);CHKERRQ(ierr); 158486d161a7SShri Abhyankar } 158586d161a7SShri Abhyankar 158686d161a7SShri Abhyankar if (!rank) { 158786d161a7SShri Abhyankar /* calculate the number of nonzeros on each processor */ 1588785e854fSJed Brown ierr = PetscMalloc1(size,&procsnz);CHKERRQ(ierr); 158986d161a7SShri Abhyankar ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 159086d161a7SShri Abhyankar for (i=0; i<size; i++) { 159186d161a7SShri Abhyankar for (j=rowners[i]; j< rowners[i+1]; j++) { 159286d161a7SShri Abhyankar procsnz[i] += rowlengths[j]; 159386d161a7SShri Abhyankar } 159486d161a7SShri Abhyankar } 159586d161a7SShri Abhyankar ierr = PetscFree(rowlengths);CHKERRQ(ierr); 159686d161a7SShri Abhyankar 159786d161a7SShri Abhyankar /* determine max buffer needed and allocate it */ 159886d161a7SShri Abhyankar maxnz = 0; 159986d161a7SShri Abhyankar for (i=0; i<size; i++) { 160086d161a7SShri Abhyankar maxnz = PetscMax(maxnz,procsnz[i]); 160186d161a7SShri Abhyankar } 1602785e854fSJed Brown ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr); 160386d161a7SShri Abhyankar 160486d161a7SShri Abhyankar /* read in my part of the matrix column indices */ 160586d161a7SShri Abhyankar nz = procsnz[0]; 1606785e854fSJed Brown ierr = PetscMalloc1(nz,&mycols);CHKERRQ(ierr); 160786d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 160886d161a7SShri Abhyankar 160986d161a7SShri Abhyankar /* read in every one elses and ship off */ 161086d161a7SShri Abhyankar for (i=1; i<size; i++) { 161186d161a7SShri Abhyankar nz = procsnz[i]; 161286d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 161386d161a7SShri Abhyankar ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 161486d161a7SShri Abhyankar } 161586d161a7SShri Abhyankar ierr = PetscFree(cols);CHKERRQ(ierr); 161686d161a7SShri Abhyankar } else { 161786d161a7SShri Abhyankar /* determine buffer space needed for message */ 161886d161a7SShri Abhyankar nz = 0; 161986d161a7SShri Abhyankar for (i=0; i<m; i++) { 162086d161a7SShri Abhyankar nz += ourlens[i]; 162186d161a7SShri Abhyankar } 1622785e854fSJed Brown ierr = PetscMalloc1((nz+1),&mycols);CHKERRQ(ierr); 162386d161a7SShri Abhyankar 162486d161a7SShri Abhyankar /* receive message of column indices*/ 162586d161a7SShri Abhyankar ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 162686d161a7SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 162786d161a7SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 162886d161a7SShri Abhyankar } 162986d161a7SShri Abhyankar 163086d161a7SShri Abhyankar /* loop over local rows, determining number of off diagonal entries */ 163186d161a7SShri Abhyankar ierr = PetscMemzero(offlens,m*sizeof(PetscInt));CHKERRQ(ierr); 163286d161a7SShri Abhyankar jj = 0; 163386d161a7SShri Abhyankar for (i=0; i<m; i++) { 163486d161a7SShri Abhyankar for (j=0; j<ourlens[i]; j++) { 163586d161a7SShri Abhyankar if (mycols[jj] < rstart || mycols[jj] >= rend) offlens[i]++; 163686d161a7SShri Abhyankar jj++; 163786d161a7SShri Abhyankar } 163886d161a7SShri Abhyankar } 163986d161a7SShri Abhyankar 164086d161a7SShri Abhyankar /* create our matrix */ 16412205254eSKarl Rupp for (i=0; i<m; i++) ourlens[i] -= offlens[i]; 164286d161a7SShri Abhyankar 164386d161a7SShri Abhyankar if (!sizesset) { 164486d161a7SShri Abhyankar ierr = MatSetSizes(newmat,m,PETSC_DECIDE,M,N);CHKERRQ(ierr); 164586d161a7SShri Abhyankar } 16460298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr); 16472205254eSKarl Rupp for (i=0; i<m; i++) ourlens[i] += offlens[i]; 164886d161a7SShri Abhyankar 164986d161a7SShri Abhyankar if (!rank) { 1650785e854fSJed Brown ierr = PetscMalloc1(maxnz,&vals);CHKERRQ(ierr); 165186d161a7SShri Abhyankar 165286d161a7SShri Abhyankar /* read in my part of the matrix numerical values */ 165386d161a7SShri Abhyankar nz = procsnz[0]; 165486d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 165586d161a7SShri Abhyankar 165686d161a7SShri Abhyankar /* insert into matrix */ 165786d161a7SShri Abhyankar jj = rstart; 165886d161a7SShri Abhyankar smycols = mycols; 165986d161a7SShri Abhyankar svals = vals; 166086d161a7SShri Abhyankar for (i=0; i<m; i++) { 166186d161a7SShri Abhyankar ierr = MatSetValues(newmat,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 166286d161a7SShri Abhyankar smycols += ourlens[i]; 166386d161a7SShri Abhyankar svals += ourlens[i]; 166486d161a7SShri Abhyankar jj++; 166586d161a7SShri Abhyankar } 166686d161a7SShri Abhyankar 166786d161a7SShri Abhyankar /* read in other processors and ship out */ 166886d161a7SShri Abhyankar for (i=1; i<size; i++) { 166986d161a7SShri Abhyankar nz = procsnz[i]; 167086d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 167186d161a7SShri Abhyankar ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 167286d161a7SShri Abhyankar } 167386d161a7SShri Abhyankar ierr = PetscFree(procsnz);CHKERRQ(ierr); 167486d161a7SShri Abhyankar } else { 167586d161a7SShri Abhyankar /* receive numeric values */ 1676785e854fSJed Brown ierr = PetscMalloc1((nz+1),&vals);CHKERRQ(ierr); 167786d161a7SShri Abhyankar 167886d161a7SShri Abhyankar /* receive message of values*/ 167986d161a7SShri Abhyankar ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr); 168086d161a7SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 168186d161a7SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 168286d161a7SShri Abhyankar 168386d161a7SShri Abhyankar /* insert into matrix */ 168486d161a7SShri Abhyankar jj = rstart; 168586d161a7SShri Abhyankar smycols = mycols; 168686d161a7SShri Abhyankar svals = vals; 168786d161a7SShri Abhyankar for (i=0; i<m; i++) { 168886d161a7SShri Abhyankar ierr = MatSetValues(newmat,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 168986d161a7SShri Abhyankar smycols += ourlens[i]; 169086d161a7SShri Abhyankar svals += ourlens[i]; 169186d161a7SShri Abhyankar jj++; 169286d161a7SShri Abhyankar } 169386d161a7SShri Abhyankar } 169486d161a7SShri Abhyankar ierr = PetscFree2(ourlens,offlens);CHKERRQ(ierr); 169586d161a7SShri Abhyankar ierr = PetscFree(vals);CHKERRQ(ierr); 169686d161a7SShri Abhyankar ierr = PetscFree(mycols);CHKERRQ(ierr); 169786d161a7SShri Abhyankar ierr = PetscFree(rowners);CHKERRQ(ierr); 169886d161a7SShri Abhyankar 169986d161a7SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 170086d161a7SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 170186d161a7SShri Abhyankar PetscFunctionReturn(0); 170286d161a7SShri Abhyankar } 170386d161a7SShri Abhyankar 170486d161a7SShri Abhyankar #undef __FUNCT__ 17056e4ee0c6SHong Zhang #define __FUNCT__ "MatEqual_MPIDense" 1706ace3abfcSBarry Smith PetscErrorCode MatEqual_MPIDense(Mat A,Mat B,PetscBool *flag) 17076e4ee0c6SHong Zhang { 17086e4ee0c6SHong Zhang Mat_MPIDense *matB = (Mat_MPIDense*)B->data,*matA = (Mat_MPIDense*)A->data; 17096e4ee0c6SHong Zhang Mat a,b; 1710ace3abfcSBarry Smith PetscBool flg; 17116e4ee0c6SHong Zhang PetscErrorCode ierr; 171290ace30eSBarry Smith 17136e4ee0c6SHong Zhang PetscFunctionBegin; 17146e4ee0c6SHong Zhang a = matA->A; 17156e4ee0c6SHong Zhang b = matB->A; 17166e4ee0c6SHong Zhang ierr = MatEqual(a,b,&flg);CHKERRQ(ierr); 1717ce94432eSBarry Smith ierr = MPI_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 17186e4ee0c6SHong Zhang PetscFunctionReturn(0); 17196e4ee0c6SHong Zhang } 172090ace30eSBarry Smith 1721