1a5eb4965SSatish Balay #ifdef PETSC_RCS_HEADER 2*7ef1d9bdSSatish Balay static char vcid[] = "$Id: mpidense.c,v 1.107 1999/03/11 22:30:12 balay Exp balay $"; 38965ea79SLois Curfman McInnes #endif 48965ea79SLois Curfman McInnes 5ed3cc1f0SBarry Smith /* 6ed3cc1f0SBarry Smith Basic functions for basic parallel dense matrices. 7ed3cc1f0SBarry Smith */ 8ed3cc1f0SBarry Smith 970f55243SBarry Smith #include "src/mat/impls/dense/mpi/mpidense.h" 10f5eb4b81SSatish Balay #include "src/vec/vecimpl.h" 118965ea79SLois Curfman McInnes 12*7ef1d9bdSSatish Balay extern int MatSetUpMultiply_MPIDense(Mat); 13*7ef1d9bdSSatish Balay 145615d1e5SSatish Balay #undef __FUNC__ 155615d1e5SSatish Balay #define __FUNC__ "MatSetValues_MPIDense" 168f6be9afSLois Curfman McInnes int MatSetValues_MPIDense(Mat mat,int m,int *idxm,int n,int *idxn,Scalar *v,InsertMode addv) 178965ea79SLois Curfman McInnes { 1839b7565bSBarry Smith Mat_MPIDense *A = (Mat_MPIDense *) mat->data; 1939b7565bSBarry Smith int ierr, i, j, rstart = A->rstart, rend = A->rend, row; 2039b7565bSBarry Smith int roworiented = A->roworiented; 218965ea79SLois Curfman McInnes 223a40ed3dSBarry Smith PetscFunctionBegin; 238965ea79SLois Curfman McInnes for ( i=0; i<m; i++ ) { 245ef9f2a5SBarry Smith if (idxm[i] < 0) continue; 25a8c6a408SBarry Smith if (idxm[i] >= A->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large"); 268965ea79SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 278965ea79SLois Curfman McInnes row = idxm[i] - rstart; 2839b7565bSBarry Smith if (roworiented) { 2939b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv); CHKERRQ(ierr); 303a40ed3dSBarry Smith } else { 318965ea79SLois Curfman McInnes for ( j=0; j<n; j++ ) { 325ef9f2a5SBarry Smith if (idxn[j] < 0) continue; 33a8c6a408SBarry Smith if (idxn[j] >= A->N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Column too large"); 3439b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv); CHKERRQ(ierr); 3539b7565bSBarry Smith } 368965ea79SLois Curfman McInnes } 373a40ed3dSBarry Smith } else { 3839b7565bSBarry Smith if (roworiented) { 39a2d1c673SSatish Balay ierr = StashValues_Private(&A->stash,idxm[i],n,idxn,v+i*n); CHKERRQ(ierr); 403a40ed3dSBarry Smith } else { /* must stash each seperately */ 4139b7565bSBarry Smith row = idxm[i]; 4239b7565bSBarry Smith for ( j=0; j<n; j++ ) { 43a2d1c673SSatish Balay ierr = StashValues_Private(&A->stash,row,1,&idxn[j],v+i+j*m);CHKERRQ(ierr); 4439b7565bSBarry Smith } 4539b7565bSBarry Smith } 46b49de8d1SLois Curfman McInnes } 47b49de8d1SLois Curfman McInnes } 483a40ed3dSBarry Smith PetscFunctionReturn(0); 49b49de8d1SLois Curfman McInnes } 50b49de8d1SLois Curfman McInnes 515615d1e5SSatish Balay #undef __FUNC__ 525615d1e5SSatish Balay #define __FUNC__ "MatGetValues_MPIDense" 538f6be9afSLois Curfman McInnes int MatGetValues_MPIDense(Mat mat,int m,int *idxm,int n,int *idxn,Scalar *v) 54b49de8d1SLois Curfman McInnes { 55b49de8d1SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data; 56b49de8d1SLois Curfman McInnes int ierr, i, j, rstart = mdn->rstart, rend = mdn->rend, row; 57b49de8d1SLois Curfman McInnes 583a40ed3dSBarry Smith PetscFunctionBegin; 59b49de8d1SLois Curfman McInnes for ( i=0; i<m; i++ ) { 60a8c6a408SBarry Smith if (idxm[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative row"); 61a8c6a408SBarry Smith if (idxm[i] >= mdn->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large"); 62b49de8d1SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 63b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 64b49de8d1SLois Curfman McInnes for ( j=0; j<n; j++ ) { 65a8c6a408SBarry Smith if (idxn[j] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative column"); 66a8c6a408SBarry Smith if (idxn[j] >= mdn->N) { 67a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Column too large"); 68a8c6a408SBarry Smith } 69b49de8d1SLois Curfman McInnes ierr = MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j); CHKERRQ(ierr); 70b49de8d1SLois Curfman McInnes } 71a8c6a408SBarry Smith } else { 72a8c6a408SBarry Smith SETERRQ(PETSC_ERR_SUP,0,"Only local values currently supported"); 738965ea79SLois Curfman McInnes } 748965ea79SLois Curfman McInnes } 753a40ed3dSBarry Smith PetscFunctionReturn(0); 768965ea79SLois Curfman McInnes } 778965ea79SLois Curfman McInnes 785615d1e5SSatish Balay #undef __FUNC__ 795615d1e5SSatish Balay #define __FUNC__ "MatGetArray_MPIDense" 808f6be9afSLois Curfman McInnes int MatGetArray_MPIDense(Mat A,Scalar **array) 81ff14e315SSatish Balay { 82ff14e315SSatish Balay Mat_MPIDense *a = (Mat_MPIDense *) A->data; 83ff14e315SSatish Balay int ierr; 84ff14e315SSatish Balay 853a40ed3dSBarry Smith PetscFunctionBegin; 86ff14e315SSatish Balay ierr = MatGetArray(a->A,array); CHKERRQ(ierr); 873a40ed3dSBarry Smith PetscFunctionReturn(0); 88ff14e315SSatish Balay } 89ff14e315SSatish Balay 905615d1e5SSatish Balay #undef __FUNC__ 915615d1e5SSatish Balay #define __FUNC__ "MatRestoreArray_MPIDense" 928f6be9afSLois Curfman McInnes int MatRestoreArray_MPIDense(Mat A,Scalar **array) 93ff14e315SSatish Balay { 943a40ed3dSBarry Smith PetscFunctionBegin; 953a40ed3dSBarry Smith PetscFunctionReturn(0); 96ff14e315SSatish Balay } 97ff14e315SSatish Balay 985615d1e5SSatish Balay #undef __FUNC__ 995615d1e5SSatish Balay #define __FUNC__ "MatAssemblyBegin_MPIDense" 1008f6be9afSLois Curfman McInnes int MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode) 1018965ea79SLois Curfman McInnes { 10239ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data; 1038965ea79SLois Curfman McInnes MPI_Comm comm = mat->comm; 104*7ef1d9bdSSatish Balay int ierr; 1058965ea79SLois Curfman McInnes InsertMode addv; 1068965ea79SLois Curfman McInnes 1073a40ed3dSBarry Smith PetscFunctionBegin; 1088965ea79SLois Curfman McInnes /* make sure all processors are either in INSERTMODE or ADDMODE */ 109ca161407SBarry Smith ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,comm);CHKERRQ(ierr); 1107056b6fcSBarry Smith if (addv == (ADD_VALUES|INSERT_VALUES)) { 111a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,0,"Cannot mix adds/inserts on different procs"); 1128965ea79SLois Curfman McInnes } 113e0fa3b82SLois Curfman McInnes mat->insertmode = addv; /* in case this processor had no cache */ 1148965ea79SLois Curfman McInnes 115*7ef1d9bdSSatish Balay ierr = StashScatterBegin_Private(&mdn->stash,mdn->rowners); CHKERRQ(ierr); 1163a40ed3dSBarry Smith PetscFunctionReturn(0); 1178965ea79SLois Curfman McInnes } 1188965ea79SLois Curfman McInnes 1195615d1e5SSatish Balay #undef __FUNC__ 1205615d1e5SSatish Balay #define __FUNC__ "MatAssemblyEnd_MPIDense" 1218f6be9afSLois Curfman McInnes int MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode) 1228965ea79SLois Curfman McInnes { 12339ddd567SLois Curfman McInnes Mat_MPIDense *mdn=(Mat_MPIDense*)mat->data; 124*7ef1d9bdSSatish Balay int i,n,ierr,*row,*col,flg,j,rstart,ncols; 125*7ef1d9bdSSatish Balay Scalar *val; 126e0fa3b82SLois Curfman McInnes InsertMode addv=mat->insertmode; 1278965ea79SLois Curfman McInnes 1283a40ed3dSBarry Smith PetscFunctionBegin; 1298965ea79SLois Curfman McInnes /* wait on receives */ 130*7ef1d9bdSSatish Balay while (1) { 131*7ef1d9bdSSatish Balay ierr = StashScatterGetMesg_Private(&mdn->stash,&n,&row,&col,&val,&flg); CHKERRQ(ierr); 132*7ef1d9bdSSatish Balay if (!flg) break; 1338965ea79SLois Curfman McInnes 134*7ef1d9bdSSatish Balay for ( i=0; i<n; ) { 135*7ef1d9bdSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 136*7ef1d9bdSSatish Balay for ( j=i,rstart=row[j]; j<n; j++ ) { if (row[j] != rstart) break; } 137*7ef1d9bdSSatish Balay if (j < n) ncols = j-i; 138*7ef1d9bdSSatish Balay else ncols = n-i; 139*7ef1d9bdSSatish Balay /* Now assemble all these values with a single function call */ 140*7ef1d9bdSSatish Balay ierr = MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,addv); CHKERRQ(ierr); 141*7ef1d9bdSSatish Balay i = j; 1428965ea79SLois Curfman McInnes } 143*7ef1d9bdSSatish Balay } 144*7ef1d9bdSSatish Balay ierr = StashScatterEnd_Private(&mdn->stash); CHKERRQ(ierr); 1458965ea79SLois Curfman McInnes 14639ddd567SLois Curfman McInnes ierr = MatAssemblyBegin(mdn->A,mode); CHKERRQ(ierr); 14739ddd567SLois Curfman McInnes ierr = MatAssemblyEnd(mdn->A,mode); CHKERRQ(ierr); 1488965ea79SLois Curfman McInnes 1496d4a8577SBarry Smith if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 15039ddd567SLois Curfman McInnes ierr = MatSetUpMultiply_MPIDense(mat); CHKERRQ(ierr); 1518965ea79SLois Curfman McInnes } 1523a40ed3dSBarry Smith PetscFunctionReturn(0); 1538965ea79SLois Curfman McInnes } 1548965ea79SLois Curfman McInnes 1555615d1e5SSatish Balay #undef __FUNC__ 1565615d1e5SSatish Balay #define __FUNC__ "MatZeroEntries_MPIDense" 1578f6be9afSLois Curfman McInnes int MatZeroEntries_MPIDense(Mat A) 1588965ea79SLois Curfman McInnes { 1593a40ed3dSBarry Smith int ierr; 16039ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense *) A->data; 1613a40ed3dSBarry Smith 1623a40ed3dSBarry Smith PetscFunctionBegin; 1633a40ed3dSBarry Smith ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 1643a40ed3dSBarry Smith PetscFunctionReturn(0); 1658965ea79SLois Curfman McInnes } 1668965ea79SLois Curfman McInnes 1675615d1e5SSatish Balay #undef __FUNC__ 1685615d1e5SSatish Balay #define __FUNC__ "MatGetBlockSize_MPIDense" 1698f6be9afSLois Curfman McInnes int MatGetBlockSize_MPIDense(Mat A,int *bs) 1704e220ebcSLois Curfman McInnes { 1713a40ed3dSBarry Smith PetscFunctionBegin; 1724e220ebcSLois Curfman McInnes *bs = 1; 1733a40ed3dSBarry Smith PetscFunctionReturn(0); 1744e220ebcSLois Curfman McInnes } 1754e220ebcSLois Curfman McInnes 1768965ea79SLois Curfman McInnes /* the code does not do the diagonal entries correctly unless the 1778965ea79SLois Curfman McInnes matrix is square and the column and row owerships are identical. 1788965ea79SLois Curfman McInnes This is a BUG. The only way to fix it seems to be to access 1793501a2bdSLois Curfman McInnes mdn->A and mdn->B directly and not through the MatZeroRows() 1808965ea79SLois Curfman McInnes routine. 1818965ea79SLois Curfman McInnes */ 1825615d1e5SSatish Balay #undef __FUNC__ 1835615d1e5SSatish Balay #define __FUNC__ "MatZeroRows_MPIDense" 1848f6be9afSLois Curfman McInnes int MatZeroRows_MPIDense(Mat A,IS is,Scalar *diag) 1858965ea79SLois Curfman McInnes { 18639ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense *) A->data; 1878965ea79SLois Curfman McInnes int i,ierr,N, *rows,*owners = l->rowners,size = l->size; 1888965ea79SLois Curfman McInnes int *procs,*nprocs,j,found,idx,nsends,*work; 1898965ea79SLois Curfman McInnes int nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank; 1908965ea79SLois Curfman McInnes int *rvalues,tag = A->tag,count,base,slen,n,*source; 1918965ea79SLois Curfman McInnes int *lens,imdex,*lrows,*values; 1928965ea79SLois Curfman McInnes MPI_Comm comm = A->comm; 1938965ea79SLois Curfman McInnes MPI_Request *send_waits,*recv_waits; 1948965ea79SLois Curfman McInnes MPI_Status recv_status,*send_status; 1958965ea79SLois Curfman McInnes IS istmp; 1968965ea79SLois Curfman McInnes 1973a40ed3dSBarry Smith PetscFunctionBegin; 19877c4ece6SBarry Smith ierr = ISGetSize(is,&N); CHKERRQ(ierr); 1998965ea79SLois Curfman McInnes ierr = ISGetIndices(is,&rows); CHKERRQ(ierr); 2008965ea79SLois Curfman McInnes 2018965ea79SLois Curfman McInnes /* first count number of contributors to each processor */ 2020452661fSBarry Smith nprocs = (int *) PetscMalloc( 2*size*sizeof(int) ); CHKPTRQ(nprocs); 203cddf8d76SBarry Smith PetscMemzero(nprocs,2*size*sizeof(int)); procs = nprocs + size; 2040452661fSBarry Smith owner = (int *) PetscMalloc((N+1)*sizeof(int)); CHKPTRQ(owner); /* see note*/ 2058965ea79SLois Curfman McInnes for ( i=0; i<N; i++ ) { 2068965ea79SLois Curfman McInnes idx = rows[i]; 2078965ea79SLois Curfman McInnes found = 0; 2088965ea79SLois Curfman McInnes for ( j=0; j<size; j++ ) { 2098965ea79SLois Curfman McInnes if (idx >= owners[j] && idx < owners[j+1]) { 2108965ea79SLois Curfman McInnes nprocs[j]++; procs[j] = 1; owner[i] = j; found = 1; break; 2118965ea79SLois Curfman McInnes } 2128965ea79SLois Curfman McInnes } 213a8c6a408SBarry Smith if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Index out of range"); 2148965ea79SLois Curfman McInnes } 2158965ea79SLois Curfman McInnes nsends = 0; for ( i=0; i<size; i++ ) { nsends += procs[i];} 2168965ea79SLois Curfman McInnes 2178965ea79SLois Curfman McInnes /* inform other processors of number of messages and max length*/ 2180452661fSBarry Smith work = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(work); 219ca161407SBarry Smith ierr = MPI_Allreduce( procs, work,size,MPI_INT,MPI_SUM,comm);CHKERRQ(ierr); 2208965ea79SLois Curfman McInnes nrecvs = work[rank]; 221ca161407SBarry Smith ierr = MPI_Allreduce( nprocs, work,size,MPI_INT,MPI_MAX,comm);CHKERRQ(ierr); 2228965ea79SLois Curfman McInnes nmax = work[rank]; 2230452661fSBarry Smith PetscFree(work); 2248965ea79SLois Curfman McInnes 2258965ea79SLois Curfman McInnes /* post receives: */ 2263a40ed3dSBarry Smith rvalues = (int *) PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(int));CHKPTRQ(rvalues); 2273a40ed3dSBarry Smith recv_waits = (MPI_Request *) PetscMalloc((nrecvs+1)*sizeof(MPI_Request));CHKPTRQ(recv_waits); 2288965ea79SLois Curfman McInnes for ( i=0; i<nrecvs; i++ ) { 229ca161407SBarry Smith ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 2308965ea79SLois Curfman McInnes } 2318965ea79SLois Curfman McInnes 2328965ea79SLois Curfman McInnes /* do sends: 2338965ea79SLois Curfman McInnes 1) starts[i] gives the starting index in svalues for stuff going to 2348965ea79SLois Curfman McInnes the ith processor 2358965ea79SLois Curfman McInnes */ 2360452661fSBarry Smith svalues = (int *) PetscMalloc( (N+1)*sizeof(int) ); CHKPTRQ(svalues); 2377056b6fcSBarry Smith send_waits = (MPI_Request *) PetscMalloc((nsends+1)*sizeof(MPI_Request));CHKPTRQ(send_waits); 2380452661fSBarry Smith starts = (int *) PetscMalloc( (size+1)*sizeof(int) ); CHKPTRQ(starts); 2398965ea79SLois Curfman McInnes starts[0] = 0; 2408965ea79SLois Curfman McInnes for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 2418965ea79SLois Curfman McInnes for ( i=0; i<N; i++ ) { 2428965ea79SLois Curfman McInnes svalues[starts[owner[i]]++] = rows[i]; 2438965ea79SLois Curfman McInnes } 2448965ea79SLois Curfman McInnes ISRestoreIndices(is,&rows); 2458965ea79SLois Curfman McInnes 2468965ea79SLois Curfman McInnes starts[0] = 0; 2478965ea79SLois Curfman McInnes for ( i=1; i<size+1; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 2488965ea79SLois Curfman McInnes count = 0; 2498965ea79SLois Curfman McInnes for ( i=0; i<size; i++ ) { 2508965ea79SLois Curfman McInnes if (procs[i]) { 251ca161407SBarry Smith ierr = MPI_Isend(svalues+starts[i],nprocs[i],MPI_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 2528965ea79SLois Curfman McInnes } 2538965ea79SLois Curfman McInnes } 2540452661fSBarry Smith PetscFree(starts); 2558965ea79SLois Curfman McInnes 2568965ea79SLois Curfman McInnes base = owners[rank]; 2578965ea79SLois Curfman McInnes 2588965ea79SLois Curfman McInnes /* wait on receives */ 2590452661fSBarry Smith lens = (int *) PetscMalloc( 2*(nrecvs+1)*sizeof(int) ); CHKPTRQ(lens); 2608965ea79SLois Curfman McInnes source = lens + nrecvs; 2618965ea79SLois Curfman McInnes count = nrecvs; slen = 0; 2628965ea79SLois Curfman McInnes while (count) { 263ca161407SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 2648965ea79SLois Curfman McInnes /* unpack receives into our local space */ 265ca161407SBarry Smith ierr = MPI_Get_count(&recv_status,MPI_INT,&n);CHKERRQ(ierr); 2668965ea79SLois Curfman McInnes source[imdex] = recv_status.MPI_SOURCE; 2678965ea79SLois Curfman McInnes lens[imdex] = n; 2688965ea79SLois Curfman McInnes slen += n; 2698965ea79SLois Curfman McInnes count--; 2708965ea79SLois Curfman McInnes } 2710452661fSBarry Smith PetscFree(recv_waits); 2728965ea79SLois Curfman McInnes 2738965ea79SLois Curfman McInnes /* move the data into the send scatter */ 2740452661fSBarry Smith lrows = (int *) PetscMalloc( (slen+1)*sizeof(int) ); CHKPTRQ(lrows); 2758965ea79SLois Curfman McInnes count = 0; 2768965ea79SLois Curfman McInnes for ( i=0; i<nrecvs; i++ ) { 2778965ea79SLois Curfman McInnes values = rvalues + i*nmax; 2788965ea79SLois Curfman McInnes for ( j=0; j<lens[i]; j++ ) { 2798965ea79SLois Curfman McInnes lrows[count++] = values[j] - base; 2808965ea79SLois Curfman McInnes } 2818965ea79SLois Curfman McInnes } 2820452661fSBarry Smith PetscFree(rvalues); PetscFree(lens); 2830452661fSBarry Smith PetscFree(owner); PetscFree(nprocs); 2848965ea79SLois Curfman McInnes 2858965ea79SLois Curfman McInnes /* actually zap the local rows */ 286029af93fSBarry Smith ierr = ISCreateGeneral(PETSC_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr); 2878965ea79SLois Curfman McInnes PLogObjectParent(A,istmp); 2880452661fSBarry Smith PetscFree(lrows); 2898965ea79SLois Curfman McInnes ierr = MatZeroRows(l->A,istmp,diag); CHKERRQ(ierr); 2908965ea79SLois Curfman McInnes ierr = ISDestroy(istmp); CHKERRQ(ierr); 2918965ea79SLois Curfman McInnes 2928965ea79SLois Curfman McInnes /* wait on sends */ 2938965ea79SLois Curfman McInnes if (nsends) { 2947056b6fcSBarry Smith send_status = (MPI_Status *) PetscMalloc(nsends*sizeof(MPI_Status));CHKPTRQ(send_status); 295ca161407SBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 2960452661fSBarry Smith PetscFree(send_status); 2978965ea79SLois Curfman McInnes } 2980452661fSBarry Smith PetscFree(send_waits); PetscFree(svalues); 2998965ea79SLois Curfman McInnes 3003a40ed3dSBarry Smith PetscFunctionReturn(0); 3018965ea79SLois Curfman McInnes } 3028965ea79SLois Curfman McInnes 3035615d1e5SSatish Balay #undef __FUNC__ 3045615d1e5SSatish Balay #define __FUNC__ "MatMult_MPIDense" 3058f6be9afSLois Curfman McInnes int MatMult_MPIDense(Mat mat,Vec xx,Vec yy) 3068965ea79SLois Curfman McInnes { 30739ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data; 3088965ea79SLois Curfman McInnes int ierr; 309c456f294SBarry Smith 3103a40ed3dSBarry Smith PetscFunctionBegin; 31143a90d84SBarry Smith ierr = VecScatterBegin(xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD,mdn->Mvctx);CHKERRQ(ierr); 31243a90d84SBarry Smith ierr = VecScatterEnd(xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD,mdn->Mvctx);CHKERRQ(ierr); 31344cd7ae7SLois Curfman McInnes ierr = MatMult_SeqDense(mdn->A,mdn->lvec,yy); CHKERRQ(ierr); 3143a40ed3dSBarry Smith PetscFunctionReturn(0); 3158965ea79SLois Curfman McInnes } 3168965ea79SLois Curfman McInnes 3175615d1e5SSatish Balay #undef __FUNC__ 3185615d1e5SSatish Balay #define __FUNC__ "MatMultAdd_MPIDense" 3198f6be9afSLois Curfman McInnes int MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz) 3208965ea79SLois Curfman McInnes { 32139ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data; 3228965ea79SLois Curfman McInnes int ierr; 323c456f294SBarry Smith 3243a40ed3dSBarry Smith PetscFunctionBegin; 32543a90d84SBarry Smith ierr = VecScatterBegin(xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD,mdn->Mvctx);CHKERRQ(ierr); 32643a90d84SBarry Smith ierr = VecScatterEnd(xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD,mdn->Mvctx);CHKERRQ(ierr); 32744cd7ae7SLois Curfman McInnes ierr = MatMultAdd_SeqDense(mdn->A,mdn->lvec,yy,zz); CHKERRQ(ierr); 3283a40ed3dSBarry Smith PetscFunctionReturn(0); 3298965ea79SLois Curfman McInnes } 3308965ea79SLois Curfman McInnes 3315615d1e5SSatish Balay #undef __FUNC__ 3325615d1e5SSatish Balay #define __FUNC__ "MatMultTrans_MPIDense" 3338f6be9afSLois Curfman McInnes int MatMultTrans_MPIDense(Mat A,Vec xx,Vec yy) 334096963f5SLois Curfman McInnes { 335096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense *) A->data; 336096963f5SLois Curfman McInnes int ierr; 3373501a2bdSLois Curfman McInnes Scalar zero = 0.0; 338096963f5SLois Curfman McInnes 3393a40ed3dSBarry Smith PetscFunctionBegin; 3403501a2bdSLois Curfman McInnes ierr = VecSet(&zero,yy); CHKERRQ(ierr); 34144cd7ae7SLois Curfman McInnes ierr = MatMultTrans_SeqDense(a->A,xx,a->lvec); CHKERRQ(ierr); 342537820f0SBarry Smith ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr); 343537820f0SBarry Smith ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr); 3443a40ed3dSBarry Smith PetscFunctionReturn(0); 345096963f5SLois Curfman McInnes } 346096963f5SLois Curfman McInnes 3475615d1e5SSatish Balay #undef __FUNC__ 3485615d1e5SSatish Balay #define __FUNC__ "MatMultTransAdd_MPIDense" 3498f6be9afSLois Curfman McInnes int MatMultTransAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz) 350096963f5SLois Curfman McInnes { 351096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense *) A->data; 352096963f5SLois Curfman McInnes int ierr; 353096963f5SLois Curfman McInnes 3543a40ed3dSBarry Smith PetscFunctionBegin; 3553501a2bdSLois Curfman McInnes ierr = VecCopy(yy,zz); CHKERRQ(ierr); 35644cd7ae7SLois Curfman McInnes ierr = MatMultTrans_SeqDense(a->A,xx,a->lvec); CHKERRQ(ierr); 357537820f0SBarry Smith ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr); 358537820f0SBarry Smith ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr); 3593a40ed3dSBarry Smith PetscFunctionReturn(0); 360096963f5SLois Curfman McInnes } 361096963f5SLois Curfman McInnes 3625615d1e5SSatish Balay #undef __FUNC__ 3635615d1e5SSatish Balay #define __FUNC__ "MatGetDiagonal_MPIDense" 3648f6be9afSLois Curfman McInnes int MatGetDiagonal_MPIDense(Mat A,Vec v) 3658965ea79SLois Curfman McInnes { 36639ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense *) A->data; 367096963f5SLois Curfman McInnes Mat_SeqDense *aloc = (Mat_SeqDense *) a->A->data; 36844cd7ae7SLois Curfman McInnes int ierr, len, i, n, m = a->m, radd; 36944cd7ae7SLois Curfman McInnes Scalar *x, zero = 0.0; 370ed3cc1f0SBarry Smith 3713a40ed3dSBarry Smith PetscFunctionBegin; 37244cd7ae7SLois Curfman McInnes VecSet(&zero,v); 373096963f5SLois Curfman McInnes ierr = VecGetArray(v,&x); CHKERRQ(ierr); 374096963f5SLois Curfman McInnes ierr = VecGetSize(v,&n); CHKERRQ(ierr); 375a8c6a408SBarry Smith if (n != a->M) SETERRQ(PETSC_ERR_ARG_SIZ,0,"Nonconforming mat and vec"); 37644cd7ae7SLois Curfman McInnes len = PetscMin(aloc->m,aloc->n); 3777ddc982cSLois Curfman McInnes radd = a->rstart*m; 37844cd7ae7SLois Curfman McInnes for ( i=0; i<len; i++ ) { 379096963f5SLois Curfman McInnes x[i] = aloc->v[radd + i*m + i]; 380096963f5SLois Curfman McInnes } 3813a40ed3dSBarry Smith PetscFunctionReturn(0); 3828965ea79SLois Curfman McInnes } 3838965ea79SLois Curfman McInnes 3845615d1e5SSatish Balay #undef __FUNC__ 3855615d1e5SSatish Balay #define __FUNC__ "MatDestroy_MPIDense" 386e1311b90SBarry Smith int MatDestroy_MPIDense(Mat mat) 3878965ea79SLois Curfman McInnes { 3883501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data; 3898965ea79SLois Curfman McInnes int ierr; 390ed3cc1f0SBarry Smith 3913a40ed3dSBarry Smith PetscFunctionBegin; 39294d884c6SBarry Smith if (--mat->refct > 0) PetscFunctionReturn(0); 39394d884c6SBarry Smith 39494d884c6SBarry Smith if (mat->mapping) { 39594d884c6SBarry Smith ierr = ISLocalToGlobalMappingDestroy(mat->mapping); CHKERRQ(ierr); 39694d884c6SBarry Smith } 39794d884c6SBarry Smith if (mat->bmapping) { 39894d884c6SBarry Smith ierr = ISLocalToGlobalMappingDestroy(mat->bmapping); CHKERRQ(ierr); 39994d884c6SBarry Smith } 4003a40ed3dSBarry Smith #if defined(USE_PETSC_LOG) 401e1311b90SBarry Smith PLogObjectState((PetscObject)mat,"Rows=%d, Cols=%d",mdn->M,mdn->N); 4028965ea79SLois Curfman McInnes #endif 403bc5ccf88SSatish Balay ierr = StashDestroy_Private(&mdn->stash); CHKERRQ(ierr); 4040452661fSBarry Smith PetscFree(mdn->rowners); 4053501a2bdSLois Curfman McInnes ierr = MatDestroy(mdn->A); CHKERRQ(ierr); 4063501a2bdSLois Curfman McInnes if (mdn->lvec) VecDestroy(mdn->lvec); 4073501a2bdSLois Curfman McInnes if (mdn->Mvctx) VecScatterDestroy(mdn->Mvctx); 408622d7880SLois Curfman McInnes if (mdn->factor) { 409622d7880SLois Curfman McInnes if (mdn->factor->temp) PetscFree(mdn->factor->temp); 410622d7880SLois Curfman McInnes if (mdn->factor->tag) PetscFree(mdn->factor->tag); 411622d7880SLois Curfman McInnes if (mdn->factor->pivots) PetscFree(mdn->factor->pivots); 412622d7880SLois Curfman McInnes PetscFree(mdn->factor); 413622d7880SLois Curfman McInnes } 4140452661fSBarry Smith PetscFree(mdn); 41561b13de0SBarry Smith if (mat->rmap) { 41661b13de0SBarry Smith ierr = MapDestroy(mat->rmap);CHKERRQ(ierr); 41761b13de0SBarry Smith } 41861b13de0SBarry Smith if (mat->cmap) { 41961b13de0SBarry Smith ierr = MapDestroy(mat->cmap);CHKERRQ(ierr); 42090f02eecSBarry Smith } 4218965ea79SLois Curfman McInnes PLogObjectDestroy(mat); 4220452661fSBarry Smith PetscHeaderDestroy(mat); 4233a40ed3dSBarry Smith PetscFunctionReturn(0); 4248965ea79SLois Curfman McInnes } 42539ddd567SLois Curfman McInnes 4265615d1e5SSatish Balay #undef __FUNC__ 4275615d1e5SSatish Balay #define __FUNC__ "MatView_MPIDense_Binary" 42839ddd567SLois Curfman McInnes static int MatView_MPIDense_Binary(Mat mat,Viewer viewer) 4298965ea79SLois Curfman McInnes { 43039ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data; 4318965ea79SLois Curfman McInnes int ierr; 4327056b6fcSBarry Smith 4333a40ed3dSBarry Smith PetscFunctionBegin; 43439ddd567SLois Curfman McInnes if (mdn->size == 1) { 43539ddd567SLois Curfman McInnes ierr = MatView(mdn->A,viewer); CHKERRQ(ierr); 4368965ea79SLois Curfman McInnes } 437a8c6a408SBarry Smith else SETERRQ(PETSC_ERR_SUP,0,"Only uniprocessor output supported"); 4383a40ed3dSBarry Smith PetscFunctionReturn(0); 4398965ea79SLois Curfman McInnes } 4408965ea79SLois Curfman McInnes 4415615d1e5SSatish Balay #undef __FUNC__ 4425615d1e5SSatish Balay #define __FUNC__ "MatView_MPIDense_ASCII" 44339ddd567SLois Curfman McInnes static int MatView_MPIDense_ASCII(Mat mat,Viewer viewer) 4448965ea79SLois Curfman McInnes { 44539ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *) mat->data; 44677ed5343SBarry Smith int ierr, format, size = mdn->size, rank = mdn->rank; 4478965ea79SLois Curfman McInnes FILE *fd; 44819bcc07fSBarry Smith ViewerType vtype; 4498965ea79SLois Curfman McInnes 4503a40ed3dSBarry Smith PetscFunctionBegin; 4513a40ed3dSBarry Smith ierr = ViewerGetType(viewer,&vtype);CHKERRQ(ierr); 45290ace30eSBarry Smith ierr = ViewerASCIIGetPointer(viewer,&fd); CHKERRQ(ierr); 45390ace30eSBarry Smith ierr = ViewerGetFormat(viewer,&format); 454639f9d9dSBarry Smith if (format == VIEWER_FORMAT_ASCII_INFO_LONG) { 4554e220ebcSLois Curfman McInnes MatInfo info; 4564e220ebcSLois Curfman McInnes ierr = MatGetInfo(mat,MAT_LOCAL,&info); 45777c4ece6SBarry Smith PetscSequentialPhaseBegin(mat->comm,1); 4584e220ebcSLois Curfman McInnes fprintf(fd," [%d] local rows %d nz %d nz alloced %d mem %d \n",rank,mdn->m, 4594e220ebcSLois Curfman McInnes (int)info.nz_used,(int)info.nz_allocated,(int)info.memory); 460096963f5SLois Curfman McInnes fflush(fd); 46177c4ece6SBarry Smith PetscSequentialPhaseEnd(mat->comm,1); 4623501a2bdSLois Curfman McInnes ierr = VecScatterView(mdn->Mvctx,viewer); CHKERRQ(ierr); 4633a40ed3dSBarry Smith PetscFunctionReturn(0); 46496f6c058SBarry Smith } else if (format == VIEWER_FORMAT_ASCII_INFO) { 4653a40ed3dSBarry Smith PetscFunctionReturn(0); 4668965ea79SLois Curfman McInnes } 46777ed5343SBarry Smith 4688965ea79SLois Curfman McInnes if (size == 1) { 46939ddd567SLois Curfman McInnes ierr = MatView(mdn->A,viewer); CHKERRQ(ierr); 4703a40ed3dSBarry Smith } else { 4718965ea79SLois Curfman McInnes /* assemble the entire matrix onto first processor. */ 4728965ea79SLois Curfman McInnes Mat A; 47339ddd567SLois Curfman McInnes int M = mdn->M, N = mdn->N,m,row,i, nz, *cols; 47439ddd567SLois Curfman McInnes Scalar *vals; 47539ddd567SLois Curfman McInnes Mat_SeqDense *Amdn = (Mat_SeqDense*) mdn->A->data; 4768965ea79SLois Curfman McInnes 4778965ea79SLois Curfman McInnes if (!rank) { 4780513a670SBarry Smith ierr = MatCreateMPIDense(mat->comm,M,N,M,N,PETSC_NULL,&A); CHKERRQ(ierr); 4793a40ed3dSBarry Smith } else { 4800513a670SBarry Smith ierr = MatCreateMPIDense(mat->comm,0,N,M,N,PETSC_NULL,&A); CHKERRQ(ierr); 4818965ea79SLois Curfman McInnes } 4828965ea79SLois Curfman McInnes PLogObjectParent(mat,A); 4838965ea79SLois Curfman McInnes 48439ddd567SLois Curfman McInnes /* Copy the matrix ... This isn't the most efficient means, 48539ddd567SLois Curfman McInnes but it's quick for now */ 48639ddd567SLois Curfman McInnes row = mdn->rstart; m = Amdn->m; 4878965ea79SLois Curfman McInnes for ( i=0; i<m; i++ ) { 48839ddd567SLois Curfman McInnes ierr = MatGetRow(mat,row,&nz,&cols,&vals); CHKERRQ(ierr); 48939ddd567SLois Curfman McInnes ierr = MatSetValues(A,1,&row,nz,cols,vals,INSERT_VALUES); CHKERRQ(ierr); 49039ddd567SLois Curfman McInnes ierr = MatRestoreRow(mat,row,&nz,&cols,&vals); CHKERRQ(ierr); 49139ddd567SLois Curfman McInnes row++; 4928965ea79SLois Curfman McInnes } 4938965ea79SLois Curfman McInnes 4946d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 4956d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 4968965ea79SLois Curfman McInnes if (!rank) { 49739ddd567SLois Curfman McInnes ierr = MatView(((Mat_MPIDense*)(A->data))->A,viewer); CHKERRQ(ierr); 4988965ea79SLois Curfman McInnes } 4998965ea79SLois Curfman McInnes ierr = MatDestroy(A); CHKERRQ(ierr); 5008965ea79SLois Curfman McInnes } 5013a40ed3dSBarry Smith PetscFunctionReturn(0); 5028965ea79SLois Curfman McInnes } 5038965ea79SLois Curfman McInnes 5045615d1e5SSatish Balay #undef __FUNC__ 5055615d1e5SSatish Balay #define __FUNC__ "MatView_MPIDense" 506e1311b90SBarry Smith int MatView_MPIDense(Mat mat,Viewer viewer) 5078965ea79SLois Curfman McInnes { 50839ddd567SLois Curfman McInnes int ierr; 509bcd2baecSBarry Smith ViewerType vtype; 5108965ea79SLois Curfman McInnes 511bcd2baecSBarry Smith ierr = ViewerGetType(viewer,&vtype); CHKERRQ(ierr); 5123f1db9ecSBarry Smith if (PetscTypeCompare(vtype,ASCII_VIEWER)) { 51339ddd567SLois Curfman McInnes ierr = MatView_MPIDense_ASCII(mat,viewer); CHKERRQ(ierr); 5143f1db9ecSBarry Smith } else if (PetscTypeCompare(vtype,BINARY_VIEWER)) { 5153a40ed3dSBarry Smith ierr = MatView_MPIDense_Binary(mat,viewer);CHKERRQ(ierr); 5165cd90555SBarry Smith } else { 5175cd90555SBarry Smith SETERRQ(1,1,"Viewer type not supported by PETSc object"); 5188965ea79SLois Curfman McInnes } 5193a40ed3dSBarry Smith PetscFunctionReturn(0); 5208965ea79SLois Curfman McInnes } 5218965ea79SLois Curfman McInnes 5225615d1e5SSatish Balay #undef __FUNC__ 5235615d1e5SSatish Balay #define __FUNC__ "MatGetInfo_MPIDense" 5248f6be9afSLois Curfman McInnes int MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info) 5258965ea79SLois Curfman McInnes { 5263501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense *) A->data; 5273501a2bdSLois Curfman McInnes Mat mdn = mat->A; 5284e220ebcSLois Curfman McInnes int ierr; 5294e220ebcSLois Curfman McInnes double isend[5], irecv[5]; 5308965ea79SLois Curfman McInnes 5313a40ed3dSBarry Smith PetscFunctionBegin; 5324e220ebcSLois Curfman McInnes info->rows_global = (double)mat->M; 5334e220ebcSLois Curfman McInnes info->columns_global = (double)mat->N; 5344e220ebcSLois Curfman McInnes info->rows_local = (double)mat->m; 5354e220ebcSLois Curfman McInnes info->columns_local = (double)mat->N; 5364e220ebcSLois Curfman McInnes info->block_size = 1.0; 5374e220ebcSLois Curfman McInnes ierr = MatGetInfo(mdn,MAT_LOCAL,info); CHKERRQ(ierr); 5384e220ebcSLois Curfman McInnes isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 5394e220ebcSLois Curfman McInnes isend[3] = info->memory; isend[4] = info->mallocs; 5408965ea79SLois Curfman McInnes if (flag == MAT_LOCAL) { 5414e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 5424e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 5434e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 5444e220ebcSLois Curfman McInnes info->memory = isend[3]; 5454e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 5468965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 547f7cdd7c9SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPI_DOUBLE,MPI_MAX,A->comm);CHKERRQ(ierr); 5484e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 5494e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 5504e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 5514e220ebcSLois Curfman McInnes info->memory = irecv[3]; 5524e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 5538965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 554f7cdd7c9SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPI_DOUBLE,MPI_SUM,A->comm);CHKERRQ(ierr); 5554e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 5564e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 5574e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 5584e220ebcSLois Curfman McInnes info->memory = irecv[3]; 5594e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 5608965ea79SLois Curfman McInnes } 5614e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 5624e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 5634e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 5643a40ed3dSBarry Smith PetscFunctionReturn(0); 5658965ea79SLois Curfman McInnes } 5668965ea79SLois Curfman McInnes 5678c469469SLois Curfman McInnes /* extern int MatLUFactorSymbolic_MPIDense(Mat,IS,IS,double,Mat*); 5688aaee692SLois Curfman McInnes extern int MatLUFactorNumeric_MPIDense(Mat,Mat*); 5698aaee692SLois Curfman McInnes extern int MatLUFactor_MPIDense(Mat,IS,IS,double); 5708aaee692SLois Curfman McInnes extern int MatSolve_MPIDense(Mat,Vec,Vec); 5718c469469SLois Curfman McInnes extern int MatSolveAdd_MPIDense(Mat,Vec,Vec,Vec); 5728aaee692SLois Curfman McInnes extern int MatSolveTrans_MPIDense(Mat,Vec,Vec); 5738aaee692SLois Curfman McInnes extern int MatSolveTransAdd_MPIDense(Mat,Vec,Vec,Vec); */ 5748aaee692SLois Curfman McInnes 5755615d1e5SSatish Balay #undef __FUNC__ 5765615d1e5SSatish Balay #define __FUNC__ "MatSetOption_MPIDense" 5778f6be9afSLois Curfman McInnes int MatSetOption_MPIDense(Mat A,MatOption op) 5788965ea79SLois Curfman McInnes { 57939ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense *) A->data; 5808965ea79SLois Curfman McInnes 5813a40ed3dSBarry Smith PetscFunctionBegin; 5826d4a8577SBarry Smith if (op == MAT_NO_NEW_NONZERO_LOCATIONS || 5836d4a8577SBarry Smith op == MAT_YES_NEW_NONZERO_LOCATIONS || 5844787f768SSatish Balay op == MAT_NEW_NONZERO_LOCATION_ERR || 5854787f768SSatish Balay op == MAT_NEW_NONZERO_ALLOCATION_ERR || 586219d9a1aSLois Curfman McInnes op == MAT_COLUMNS_SORTED || 587219d9a1aSLois Curfman McInnes op == MAT_COLUMNS_UNSORTED) { 588b1fbbac0SLois Curfman McInnes MatSetOption(a->A,op); 589b1fbbac0SLois Curfman McInnes } else if (op == MAT_ROW_ORIENTED) { 590aeafbbfcSLois Curfman McInnes a->roworiented = 1; 5918965ea79SLois Curfman McInnes MatSetOption(a->A,op); 592b1fbbac0SLois Curfman McInnes } else if (op == MAT_ROWS_SORTED || 593219d9a1aSLois Curfman McInnes op == MAT_ROWS_UNSORTED || 5946d4a8577SBarry Smith op == MAT_SYMMETRIC || 5956d4a8577SBarry Smith op == MAT_STRUCTURALLY_SYMMETRIC || 596b51ba29fSSatish Balay op == MAT_YES_NEW_DIAGONALS || 597b51ba29fSSatish Balay op == MAT_USE_HASH_TABLE) { 598981c4779SBarry Smith PLogInfo(A,"MatSetOption_MPIDense:Option ignored\n"); 5993a40ed3dSBarry Smith } else if (op == MAT_COLUMN_ORIENTED) { 6003a40ed3dSBarry Smith a->roworiented = 0; MatSetOption(a->A,op); 6013a40ed3dSBarry Smith } else if (op == MAT_NO_NEW_DIAGONALS) { 6023a40ed3dSBarry Smith SETERRQ(PETSC_ERR_SUP,0,"MAT_NO_NEW_DIAGONALS"); 6033a40ed3dSBarry Smith } else { 6043a40ed3dSBarry Smith SETERRQ(PETSC_ERR_SUP,0,"unknown option"); 6053a40ed3dSBarry Smith } 6063a40ed3dSBarry Smith PetscFunctionReturn(0); 6078965ea79SLois Curfman McInnes } 6088965ea79SLois Curfman McInnes 6095615d1e5SSatish Balay #undef __FUNC__ 6105615d1e5SSatish Balay #define __FUNC__ "MatGetSize_MPIDense" 6118f6be9afSLois Curfman McInnes int MatGetSize_MPIDense(Mat A,int *m,int *n) 6128965ea79SLois Curfman McInnes { 6133501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense *) A->data; 6143a40ed3dSBarry Smith 6153a40ed3dSBarry Smith PetscFunctionBegin; 6168965ea79SLois Curfman McInnes *m = mat->M; *n = mat->N; 6173a40ed3dSBarry Smith PetscFunctionReturn(0); 6188965ea79SLois Curfman McInnes } 6198965ea79SLois Curfman McInnes 6205615d1e5SSatish Balay #undef __FUNC__ 6215615d1e5SSatish Balay #define __FUNC__ "MatGetLocalSize_MPIDense" 6228f6be9afSLois Curfman McInnes int MatGetLocalSize_MPIDense(Mat A,int *m,int *n) 6238965ea79SLois Curfman McInnes { 6243501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense *) A->data; 6253a40ed3dSBarry Smith 6263a40ed3dSBarry Smith PetscFunctionBegin; 6278965ea79SLois Curfman McInnes *m = mat->m; *n = mat->N; 6283a40ed3dSBarry Smith PetscFunctionReturn(0); 6298965ea79SLois Curfman McInnes } 6308965ea79SLois Curfman McInnes 6315615d1e5SSatish Balay #undef __FUNC__ 6325615d1e5SSatish Balay #define __FUNC__ "MatGetOwnershipRange_MPIDense" 6338f6be9afSLois Curfman McInnes int MatGetOwnershipRange_MPIDense(Mat A,int *m,int *n) 6348965ea79SLois Curfman McInnes { 6353501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense *) A->data; 6363a40ed3dSBarry Smith 6373a40ed3dSBarry Smith PetscFunctionBegin; 6388965ea79SLois Curfman McInnes *m = mat->rstart; *n = mat->rend; 6393a40ed3dSBarry Smith PetscFunctionReturn(0); 6408965ea79SLois Curfman McInnes } 6418965ea79SLois Curfman McInnes 6425615d1e5SSatish Balay #undef __FUNC__ 6435615d1e5SSatish Balay #define __FUNC__ "MatGetRow_MPIDense" 6448f6be9afSLois Curfman McInnes int MatGetRow_MPIDense(Mat A,int row,int *nz,int **idx,Scalar **v) 6458965ea79SLois Curfman McInnes { 6463501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense *) A->data; 6473a40ed3dSBarry Smith int lrow, rstart = mat->rstart, rend = mat->rend,ierr; 6488965ea79SLois Curfman McInnes 6493a40ed3dSBarry Smith PetscFunctionBegin; 650a8c6a408SBarry Smith if (row < rstart || row >= rend) SETERRQ(PETSC_ERR_SUP,0,"only local rows") 6518965ea79SLois Curfman McInnes lrow = row - rstart; 6523a40ed3dSBarry Smith ierr = MatGetRow(mat->A,lrow,nz,idx,v);CHKERRQ(ierr); 6533a40ed3dSBarry Smith PetscFunctionReturn(0); 6548965ea79SLois Curfman McInnes } 6558965ea79SLois Curfman McInnes 6565615d1e5SSatish Balay #undef __FUNC__ 6575615d1e5SSatish Balay #define __FUNC__ "MatRestoreRow_MPIDense" 6588f6be9afSLois Curfman McInnes int MatRestoreRow_MPIDense(Mat mat,int row,int *nz,int **idx,Scalar **v) 6598965ea79SLois Curfman McInnes { 6603a40ed3dSBarry Smith PetscFunctionBegin; 6610452661fSBarry Smith if (idx) PetscFree(*idx); 6620452661fSBarry Smith if (v) PetscFree(*v); 6633a40ed3dSBarry Smith PetscFunctionReturn(0); 6648965ea79SLois Curfman McInnes } 6658965ea79SLois Curfman McInnes 6665615d1e5SSatish Balay #undef __FUNC__ 6675615d1e5SSatish Balay #define __FUNC__ "MatNorm_MPIDense" 6688f6be9afSLois Curfman McInnes int MatNorm_MPIDense(Mat A,NormType type,double *norm) 669096963f5SLois Curfman McInnes { 6703501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *) A->data; 6713501a2bdSLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*) mdn->A->data; 6723501a2bdSLois Curfman McInnes int ierr, i, j; 6733501a2bdSLois Curfman McInnes double sum = 0.0; 6743501a2bdSLois Curfman McInnes Scalar *v = mat->v; 6753501a2bdSLois Curfman McInnes 6763a40ed3dSBarry Smith PetscFunctionBegin; 6773501a2bdSLois Curfman McInnes if (mdn->size == 1) { 6783501a2bdSLois Curfman McInnes ierr = MatNorm(mdn->A,type,norm); CHKERRQ(ierr); 6793501a2bdSLois Curfman McInnes } else { 6803501a2bdSLois Curfman McInnes if (type == NORM_FROBENIUS) { 6813501a2bdSLois Curfman McInnes for (i=0; i<mat->n*mat->m; i++ ) { 6823a40ed3dSBarry Smith #if defined(USE_PETSC_COMPLEX) 683e20fef11SSatish Balay sum += PetscReal(PetscConj(*v)*(*v)); v++; 6843501a2bdSLois Curfman McInnes #else 6853501a2bdSLois Curfman McInnes sum += (*v)*(*v); v++; 6863501a2bdSLois Curfman McInnes #endif 6873501a2bdSLois Curfman McInnes } 688ca161407SBarry Smith ierr = MPI_Allreduce(&sum,norm,1,MPI_DOUBLE,MPI_SUM,A->comm);CHKERRQ(ierr); 6893501a2bdSLois Curfman McInnes *norm = sqrt(*norm); 6903501a2bdSLois Curfman McInnes PLogFlops(2*mat->n*mat->m); 6913a40ed3dSBarry Smith } else if (type == NORM_1) { 6923501a2bdSLois Curfman McInnes double *tmp, *tmp2; 6930452661fSBarry Smith tmp = (double *) PetscMalloc( 2*mdn->N*sizeof(double) ); CHKPTRQ(tmp); 6943501a2bdSLois Curfman McInnes tmp2 = tmp + mdn->N; 695cddf8d76SBarry Smith PetscMemzero(tmp,2*mdn->N*sizeof(double)); 696096963f5SLois Curfman McInnes *norm = 0.0; 6973501a2bdSLois Curfman McInnes v = mat->v; 6983501a2bdSLois Curfman McInnes for ( j=0; j<mat->n; j++ ) { 6993501a2bdSLois Curfman McInnes for ( i=0; i<mat->m; i++ ) { 70067e560aaSBarry Smith tmp[j] += PetscAbsScalar(*v); v++; 7013501a2bdSLois Curfman McInnes } 7023501a2bdSLois Curfman McInnes } 703ca161407SBarry Smith ierr = MPI_Allreduce(tmp,tmp2,mdn->N,MPI_DOUBLE,MPI_SUM,A->comm);CHKERRQ(ierr); 7043501a2bdSLois Curfman McInnes for ( j=0; j<mdn->N; j++ ) { 7053501a2bdSLois Curfman McInnes if (tmp2[j] > *norm) *norm = tmp2[j]; 7063501a2bdSLois Curfman McInnes } 7070452661fSBarry Smith PetscFree(tmp); 7083501a2bdSLois Curfman McInnes PLogFlops(mat->n*mat->m); 7093a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 7103501a2bdSLois Curfman McInnes double ntemp; 7113501a2bdSLois Curfman McInnes ierr = MatNorm(mdn->A,type,&ntemp); CHKERRQ(ierr); 712ca161407SBarry Smith ierr = MPI_Allreduce(&ntemp,norm,1,MPI_DOUBLE,MPI_MAX,A->comm);CHKERRQ(ierr); 7133a40ed3dSBarry Smith } else { 714a8c6a408SBarry Smith SETERRQ(PETSC_ERR_SUP,0,"No support for two norm"); 7153501a2bdSLois Curfman McInnes } 7163501a2bdSLois Curfman McInnes } 7173a40ed3dSBarry Smith PetscFunctionReturn(0); 7183501a2bdSLois Curfman McInnes } 7193501a2bdSLois Curfman McInnes 7205615d1e5SSatish Balay #undef __FUNC__ 7215615d1e5SSatish Balay #define __FUNC__ "MatTranspose_MPIDense" 7228f6be9afSLois Curfman McInnes int MatTranspose_MPIDense(Mat A,Mat *matout) 7233501a2bdSLois Curfman McInnes { 7243501a2bdSLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense *) A->data; 7253501a2bdSLois Curfman McInnes Mat_SeqDense *Aloc = (Mat_SeqDense *) a->A->data; 7263501a2bdSLois Curfman McInnes Mat B; 7273501a2bdSLois Curfman McInnes int M = a->M, N = a->N, m, n, *rwork, rstart = a->rstart; 7283501a2bdSLois Curfman McInnes int j, i, ierr; 7293501a2bdSLois Curfman McInnes Scalar *v; 7303501a2bdSLois Curfman McInnes 7313a40ed3dSBarry Smith PetscFunctionBegin; 7327056b6fcSBarry Smith if (matout == PETSC_NULL && M != N) { 733a8c6a408SBarry Smith SETERRQ(PETSC_ERR_SUP,0,"Supports square matrix only in-place"); 7347056b6fcSBarry Smith } 7357056b6fcSBarry Smith ierr = MatCreateMPIDense(A->comm,PETSC_DECIDE,PETSC_DECIDE,N,M,PETSC_NULL,&B);CHKERRQ(ierr); 7363501a2bdSLois Curfman McInnes 7373501a2bdSLois Curfman McInnes m = Aloc->m; n = Aloc->n; v = Aloc->v; 7380452661fSBarry Smith rwork = (int *) PetscMalloc(n*sizeof(int)); CHKPTRQ(rwork); 7393501a2bdSLois Curfman McInnes for ( j=0; j<n; j++ ) { 7403501a2bdSLois Curfman McInnes for (i=0; i<m; i++) rwork[i] = rstart + i; 7413501a2bdSLois Curfman McInnes ierr = MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES); CHKERRQ(ierr); 7423501a2bdSLois Curfman McInnes v += m; 7433501a2bdSLois Curfman McInnes } 7440452661fSBarry Smith PetscFree(rwork); 7456d4a8577SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 7466d4a8577SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 7473638b69dSLois Curfman McInnes if (matout != PETSC_NULL) { 7483501a2bdSLois Curfman McInnes *matout = B; 7493501a2bdSLois Curfman McInnes } else { 750f830108cSBarry Smith PetscOps *Abops; 75109dc0095SBarry Smith MatOps Aops; 752f830108cSBarry Smith 7533501a2bdSLois Curfman McInnes /* This isn't really an in-place transpose, but free data struct from a */ 7540452661fSBarry Smith PetscFree(a->rowners); 7553501a2bdSLois Curfman McInnes ierr = MatDestroy(a->A); CHKERRQ(ierr); 7563501a2bdSLois Curfman McInnes if (a->lvec) VecDestroy(a->lvec); 7573501a2bdSLois Curfman McInnes if (a->Mvctx) VecScatterDestroy(a->Mvctx); 7580452661fSBarry Smith PetscFree(a); 759f830108cSBarry Smith 760f830108cSBarry Smith /* 761f830108cSBarry Smith This is horrible, horrible code. We need to keep the 762f830108cSBarry Smith A pointers for the bops and ops but copy everything 763f830108cSBarry Smith else from C. 764f830108cSBarry Smith */ 765f830108cSBarry Smith Abops = A->bops; 766f830108cSBarry Smith Aops = A->ops; 767f09e8eb9SSatish Balay PetscMemcpy(A,B,sizeof(struct _p_Mat)); 768f830108cSBarry Smith A->bops = Abops; 769f830108cSBarry Smith A->ops = Aops; 770f830108cSBarry Smith 7710452661fSBarry Smith PetscHeaderDestroy(B); 7723501a2bdSLois Curfman McInnes } 7733a40ed3dSBarry Smith PetscFunctionReturn(0); 774096963f5SLois Curfman McInnes } 775096963f5SLois Curfman McInnes 776eadb2fb4SBarry Smith #include "pinclude/blaslapack.h" 7775615d1e5SSatish Balay #undef __FUNC__ 7785615d1e5SSatish Balay #define __FUNC__ "MatScale_MPIDense" 7798f6be9afSLois Curfman McInnes int MatScale_MPIDense(Scalar *alpha,Mat inA) 78044cd7ae7SLois Curfman McInnes { 78144cd7ae7SLois Curfman McInnes Mat_MPIDense *A = (Mat_MPIDense *) inA->data; 78244cd7ae7SLois Curfman McInnes Mat_SeqDense *a = (Mat_SeqDense *) A->A->data; 78344cd7ae7SLois Curfman McInnes int one = 1, nz; 78444cd7ae7SLois Curfman McInnes 7853a40ed3dSBarry Smith PetscFunctionBegin; 78644cd7ae7SLois Curfman McInnes nz = a->m*a->n; 78744cd7ae7SLois Curfman McInnes BLscal_( &nz, alpha, a->v, &one ); 78844cd7ae7SLois Curfman McInnes PLogFlops(nz); 7893a40ed3dSBarry Smith PetscFunctionReturn(0); 79044cd7ae7SLois Curfman McInnes } 79144cd7ae7SLois Curfman McInnes 7925609ef8eSBarry Smith static int MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat *); 7937b2a1423SBarry Smith extern int MatGetSubMatrices_MPIDense(Mat,int,IS *,IS *,MatReuse,Mat **); 7948965ea79SLois Curfman McInnes 7958965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/ 79609dc0095SBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIDense, 79709dc0095SBarry Smith MatGetRow_MPIDense, 79809dc0095SBarry Smith MatRestoreRow_MPIDense, 79909dc0095SBarry Smith MatMult_MPIDense, 80009dc0095SBarry Smith MatMultAdd_MPIDense, 80109dc0095SBarry Smith MatMultTrans_MPIDense, 80209dc0095SBarry Smith MatMultTransAdd_MPIDense, 8038965ea79SLois Curfman McInnes 0, 80409dc0095SBarry Smith 0, 80509dc0095SBarry Smith 0, 80609dc0095SBarry Smith 0, 80709dc0095SBarry Smith 0, 80809dc0095SBarry Smith 0, 80909dc0095SBarry Smith 0, 81009dc0095SBarry Smith MatTranspose_MPIDense, 81109dc0095SBarry Smith MatGetInfo_MPIDense,0, 81209dc0095SBarry Smith MatGetDiagonal_MPIDense, 81309dc0095SBarry Smith 0, 81409dc0095SBarry Smith MatNorm_MPIDense, 81509dc0095SBarry Smith MatAssemblyBegin_MPIDense, 81609dc0095SBarry Smith MatAssemblyEnd_MPIDense, 81709dc0095SBarry Smith 0, 81809dc0095SBarry Smith MatSetOption_MPIDense, 81909dc0095SBarry Smith MatZeroEntries_MPIDense, 82009dc0095SBarry Smith MatZeroRows_MPIDense, 82109dc0095SBarry Smith 0, 82209dc0095SBarry Smith 0, 82309dc0095SBarry Smith 0, 82409dc0095SBarry Smith 0, 82509dc0095SBarry Smith MatGetSize_MPIDense, 82609dc0095SBarry Smith MatGetLocalSize_MPIDense, 82739ddd567SLois Curfman McInnes MatGetOwnershipRange_MPIDense, 82809dc0095SBarry Smith 0, 82909dc0095SBarry Smith 0, 83009dc0095SBarry Smith MatGetArray_MPIDense, 83109dc0095SBarry Smith MatRestoreArray_MPIDense, 8325609ef8eSBarry Smith MatDuplicate_MPIDense, 83309dc0095SBarry Smith 0, 83409dc0095SBarry Smith 0, 83509dc0095SBarry Smith 0, 83609dc0095SBarry Smith 0, 83709dc0095SBarry Smith 0, 8382ce60cd0SSatish Balay MatGetSubMatrices_MPIDense, 83909dc0095SBarry Smith 0, 84009dc0095SBarry Smith MatGetValues_MPIDense, 84109dc0095SBarry Smith 0, 84209dc0095SBarry Smith 0, 84309dc0095SBarry Smith MatScale_MPIDense, 84409dc0095SBarry Smith 0, 84509dc0095SBarry Smith 0, 84609dc0095SBarry Smith 0, 84709dc0095SBarry Smith MatGetBlockSize_MPIDense, 84809dc0095SBarry Smith 0, 84909dc0095SBarry Smith 0, 85009dc0095SBarry Smith 0, 85109dc0095SBarry Smith 0, 85209dc0095SBarry Smith 0, 85309dc0095SBarry Smith 0, 85409dc0095SBarry Smith 0, 85509dc0095SBarry Smith 0, 85609dc0095SBarry Smith 0, 85709dc0095SBarry Smith 0, 85809dc0095SBarry Smith 0, 85909dc0095SBarry Smith 0, 86009dc0095SBarry Smith MatGetMaps_Petsc}; 8618965ea79SLois Curfman McInnes 8625615d1e5SSatish Balay #undef __FUNC__ 8635615d1e5SSatish Balay #define __FUNC__ "MatCreateMPIDense" 8648965ea79SLois Curfman McInnes /*@C 86539ddd567SLois Curfman McInnes MatCreateMPIDense - Creates a sparse parallel matrix in dense format. 8668965ea79SLois Curfman McInnes 867db81eaa0SLois Curfman McInnes Collective on MPI_Comm 868db81eaa0SLois Curfman McInnes 8698965ea79SLois Curfman McInnes Input Parameters: 870db81eaa0SLois Curfman McInnes + comm - MPI communicator 8718965ea79SLois Curfman McInnes . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 872db81eaa0SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 8738965ea79SLois Curfman McInnes . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 874db81eaa0SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 875db81eaa0SLois Curfman McInnes - data - optional location of matrix data. Set data=PETSC_NULL for PETSc 876dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 8778965ea79SLois Curfman McInnes 8788965ea79SLois Curfman McInnes Output Parameter: 879477f1c0bSLois Curfman McInnes . A - the matrix 8808965ea79SLois Curfman McInnes 881b259b22eSLois Curfman McInnes Notes: 88239ddd567SLois Curfman McInnes The dense format is fully compatible with standard Fortran 77 88339ddd567SLois Curfman McInnes storage by columns. 8848965ea79SLois Curfman McInnes 88518f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 88618f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 887b4fd4287SBarry Smith set data=PETSC_NULL. 88818f449edSLois Curfman McInnes 8898965ea79SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 8908965ea79SLois Curfman McInnes (possibly both). 8918965ea79SLois Curfman McInnes 8923501a2bdSLois Curfman McInnes Currently, the only parallel dense matrix decomposition is by rows, 8933501a2bdSLois Curfman McInnes so that n=N and each submatrix owns all of the global columns. 8943501a2bdSLois Curfman McInnes 895027ccd11SLois Curfman McInnes Level: intermediate 896027ccd11SLois Curfman McInnes 89739ddd567SLois Curfman McInnes .keywords: matrix, dense, parallel 8988965ea79SLois Curfman McInnes 89939ddd567SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 9008965ea79SLois Curfman McInnes @*/ 901477f1c0bSLois Curfman McInnes int MatCreateMPIDense(MPI_Comm comm,int m,int n,int M,int N,Scalar *data,Mat *A) 9028965ea79SLois Curfman McInnes { 9038965ea79SLois Curfman McInnes Mat mat; 90439ddd567SLois Curfman McInnes Mat_MPIDense *a; 90525cdf11fSBarry Smith int ierr, i,flg; 9068965ea79SLois Curfman McInnes 9073a40ed3dSBarry Smith PetscFunctionBegin; 908ed2daf61SLois Curfman McInnes /* Note: For now, when data is specified above, this assumes the user correctly 909ed2daf61SLois Curfman McInnes allocates the local dense storage space. We should add error checking. */ 91018f449edSLois Curfman McInnes 911477f1c0bSLois Curfman McInnes *A = 0; 9123f1db9ecSBarry Smith PetscHeaderCreate(mat,_p_Mat,struct _MatOps,MAT_COOKIE,MATMPIDENSE,"Mat",comm,MatDestroy,MatView); 9138965ea79SLois Curfman McInnes PLogObjectCreate(mat); 9140452661fSBarry Smith mat->data = (void *) (a = PetscNew(Mat_MPIDense)); CHKPTRQ(a); 91509dc0095SBarry Smith PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps)); 916e1311b90SBarry Smith mat->ops->destroy = MatDestroy_MPIDense; 917e1311b90SBarry Smith mat->ops->view = MatView_MPIDense; 9188965ea79SLois Curfman McInnes mat->factor = 0; 91990f02eecSBarry Smith mat->mapping = 0; 9208965ea79SLois Curfman McInnes 921622d7880SLois Curfman McInnes a->factor = 0; 922e0fa3b82SLois Curfman McInnes mat->insertmode = NOT_SET_VALUES; 9238965ea79SLois Curfman McInnes MPI_Comm_rank(comm,&a->rank); 9248965ea79SLois Curfman McInnes MPI_Comm_size(comm,&a->size); 9258965ea79SLois Curfman McInnes 92696f6c058SBarry Smith ierr = PetscSplitOwnership(comm,&m,&M);CHKERRQ(ierr); 92739ddd567SLois Curfman McInnes 928c7fcc2eaSBarry Smith /* 929c7fcc2eaSBarry Smith The computation of n is wrong below, n should represent the number of local 930c7fcc2eaSBarry Smith rows in the right (column vector) 931c7fcc2eaSBarry Smith */ 932c7fcc2eaSBarry Smith 93339ddd567SLois Curfman McInnes /* each row stores all columns */ 93439ddd567SLois Curfman McInnes if (N == PETSC_DECIDE) N = n; 935d7e8b826SBarry Smith if (n == PETSC_DECIDE) {n = N/a->size + ((N % a->size) > a->rank);} 936a8c6a408SBarry Smith /* if (n != N) SETERRQ(PETSC_ERR_SUP,0,"For now, only n=N is supported"); */ 937aca0ad90SLois Curfman McInnes a->N = mat->N = N; 938aca0ad90SLois Curfman McInnes a->M = mat->M = M; 939aca0ad90SLois Curfman McInnes a->m = mat->m = m; 940aca0ad90SLois Curfman McInnes a->n = mat->n = n; 9418965ea79SLois Curfman McInnes 942c7fcc2eaSBarry Smith /* the information in the maps duplicates the information computed below, eventually 943c7fcc2eaSBarry Smith we should remove the duplicate information that is not contained in the maps */ 944488ecbafSBarry Smith ierr = MapCreateMPI(comm,m,M,&mat->rmap);CHKERRQ(ierr); 94596f6c058SBarry Smith ierr = MapCreateMPI(comm,PETSC_DECIDE,N,&mat->cmap);CHKERRQ(ierr); 946c7fcc2eaSBarry Smith 9478965ea79SLois Curfman McInnes /* build local table of row and column ownerships */ 948d7e8b826SBarry Smith a->rowners = (int *) PetscMalloc(2*(a->size+2)*sizeof(int)); CHKPTRQ(a->rowners); 949d7e8b826SBarry Smith a->cowners = a->rowners + a->size + 1; 950f09e8eb9SSatish Balay PLogObjectMemory(mat,2*(a->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPIDense)); 951ca161407SBarry Smith ierr = MPI_Allgather(&m,1,MPI_INT,a->rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 9528965ea79SLois Curfman McInnes a->rowners[0] = 0; 9538965ea79SLois Curfman McInnes for ( i=2; i<=a->size; i++ ) { 9548965ea79SLois Curfman McInnes a->rowners[i] += a->rowners[i-1]; 9558965ea79SLois Curfman McInnes } 9568965ea79SLois Curfman McInnes a->rstart = a->rowners[a->rank]; 9578965ea79SLois Curfman McInnes a->rend = a->rowners[a->rank+1]; 958ca161407SBarry Smith ierr = MPI_Allgather(&n,1,MPI_INT,a->cowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 959d7e8b826SBarry Smith a->cowners[0] = 0; 960d7e8b826SBarry Smith for ( i=2; i<=a->size; i++ ) { 961d7e8b826SBarry Smith a->cowners[i] += a->cowners[i-1]; 962d7e8b826SBarry Smith } 9638965ea79SLois Curfman McInnes 964029af93fSBarry Smith ierr = MatCreateSeqDense(PETSC_COMM_SELF,m,N,data,&a->A); CHKERRQ(ierr); 9658965ea79SLois Curfman McInnes PLogObjectParent(mat,a->A); 9668965ea79SLois Curfman McInnes 9678965ea79SLois Curfman McInnes /* build cache for off array entries formed */ 968a2d1c673SSatish Balay ierr = StashCreate_Private(comm,1,1,&a->stash); CHKERRQ(ierr); 9698965ea79SLois Curfman McInnes 9708965ea79SLois Curfman McInnes /* stuff used for matrix vector multiply */ 9718965ea79SLois Curfman McInnes a->lvec = 0; 9728965ea79SLois Curfman McInnes a->Mvctx = 0; 97339b7565bSBarry Smith a->roworiented = 1; 9748965ea79SLois Curfman McInnes 975477f1c0bSLois Curfman McInnes *A = mat; 97625cdf11fSBarry Smith ierr = OptionsHasName(PETSC_NULL,"-help",&flg); CHKERRQ(ierr); 97725cdf11fSBarry Smith if (flg) { 9788c469469SLois Curfman McInnes ierr = MatPrintHelp(mat); CHKERRQ(ierr); 9798c469469SLois Curfman McInnes } 9803a40ed3dSBarry Smith PetscFunctionReturn(0); 9818965ea79SLois Curfman McInnes } 9828965ea79SLois Curfman McInnes 9835615d1e5SSatish Balay #undef __FUNC__ 9845609ef8eSBarry Smith #define __FUNC__ "MatDuplicate_MPIDense" 9855609ef8eSBarry Smith static int MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat) 9868965ea79SLois Curfman McInnes { 9878965ea79SLois Curfman McInnes Mat mat; 9883501a2bdSLois Curfman McInnes Mat_MPIDense *a,*oldmat = (Mat_MPIDense *) A->data; 98939ddd567SLois Curfman McInnes int ierr; 9902ba99913SLois Curfman McInnes FactorCtx *factor; 9918965ea79SLois Curfman McInnes 9923a40ed3dSBarry Smith PetscFunctionBegin; 9938965ea79SLois Curfman McInnes *newmat = 0; 9943f1db9ecSBarry Smith PetscHeaderCreate(mat,_p_Mat,struct _MatOps,MAT_COOKIE,MATMPIDENSE,"Mat",A->comm,MatDestroy,MatView); 9958965ea79SLois Curfman McInnes PLogObjectCreate(mat); 9960452661fSBarry Smith mat->data = (void *) (a = PetscNew(Mat_MPIDense)); CHKPTRQ(a); 99709dc0095SBarry Smith PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps)); 998e1311b90SBarry Smith mat->ops->destroy = MatDestroy_MPIDense; 999e1311b90SBarry Smith mat->ops->view = MatView_MPIDense; 10003501a2bdSLois Curfman McInnes mat->factor = A->factor; 1001c456f294SBarry Smith mat->assembled = PETSC_TRUE; 10028965ea79SLois Curfman McInnes 100344cd7ae7SLois Curfman McInnes a->m = mat->m = oldmat->m; 100444cd7ae7SLois Curfman McInnes a->n = mat->n = oldmat->n; 100544cd7ae7SLois Curfman McInnes a->M = mat->M = oldmat->M; 100644cd7ae7SLois Curfman McInnes a->N = mat->N = oldmat->N; 10072ba99913SLois Curfman McInnes if (oldmat->factor) { 10082ba99913SLois Curfman McInnes a->factor = (FactorCtx *) (factor = PetscNew(FactorCtx)); CHKPTRQ(factor); 10092ba99913SLois Curfman McInnes /* copy factor contents ... add this code! */ 10102ba99913SLois Curfman McInnes } else a->factor = 0; 10118965ea79SLois Curfman McInnes 10128965ea79SLois Curfman McInnes a->rstart = oldmat->rstart; 10138965ea79SLois Curfman McInnes a->rend = oldmat->rend; 10148965ea79SLois Curfman McInnes a->size = oldmat->size; 10158965ea79SLois Curfman McInnes a->rank = oldmat->rank; 1016e0fa3b82SLois Curfman McInnes mat->insertmode = NOT_SET_VALUES; 10178965ea79SLois Curfman McInnes 10180452661fSBarry Smith a->rowners = (int *) PetscMalloc((a->size+1)*sizeof(int)); CHKPTRQ(a->rowners); 1019f09e8eb9SSatish Balay PLogObjectMemory(mat,(a->size+1)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPIDense)); 10208965ea79SLois Curfman McInnes PetscMemcpy(a->rowners,oldmat->rowners,(a->size+1)*sizeof(int)); 1021a2d1c673SSatish Balay ierr = StashCreate_Private(A->comm,1,1,&a->stash); CHKERRQ(ierr); 10228965ea79SLois Curfman McInnes 10238965ea79SLois Curfman McInnes ierr = VecDuplicate(oldmat->lvec,&a->lvec); CHKERRQ(ierr); 10248965ea79SLois Curfman McInnes PLogObjectParent(mat,a->lvec); 102555659b69SBarry Smith ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx); CHKERRQ(ierr); 10268965ea79SLois Curfman McInnes PLogObjectParent(mat,a->Mvctx); 10275609ef8eSBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A); CHKERRQ(ierr); 10288965ea79SLois Curfman McInnes PLogObjectParent(mat,a->A); 10298965ea79SLois Curfman McInnes *newmat = mat; 10303a40ed3dSBarry Smith PetscFunctionReturn(0); 10318965ea79SLois Curfman McInnes } 10328965ea79SLois Curfman McInnes 103377c4ece6SBarry Smith #include "sys.h" 10348965ea79SLois Curfman McInnes 10355615d1e5SSatish Balay #undef __FUNC__ 10365615d1e5SSatish Balay #define __FUNC__ "MatLoad_MPIDense_DenseInFile" 103790ace30eSBarry Smith int MatLoad_MPIDense_DenseInFile(MPI_Comm comm,int fd,int M, int N, Mat *newmat) 103890ace30eSBarry Smith { 103940011551SBarry Smith int *rowners, i,size,rank,m,ierr,nz,j; 104090ace30eSBarry Smith Scalar *array,*vals,*vals_ptr; 104190ace30eSBarry Smith MPI_Status status; 104290ace30eSBarry Smith 10433a40ed3dSBarry Smith PetscFunctionBegin; 104490ace30eSBarry Smith MPI_Comm_rank(comm,&rank); 104590ace30eSBarry Smith MPI_Comm_size(comm,&size); 104690ace30eSBarry Smith 104790ace30eSBarry Smith /* determine ownership of all rows */ 104890ace30eSBarry Smith m = M/size + ((M % size) > rank); 104990ace30eSBarry Smith rowners = (int *) PetscMalloc((size+2)*sizeof(int)); CHKPTRQ(rowners); 1050ca161407SBarry Smith ierr = MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 105190ace30eSBarry Smith rowners[0] = 0; 105290ace30eSBarry Smith for ( i=2; i<=size; i++ ) { 105390ace30eSBarry Smith rowners[i] += rowners[i-1]; 105490ace30eSBarry Smith } 105590ace30eSBarry Smith 105690ace30eSBarry Smith ierr = MatCreateMPIDense(comm,m,PETSC_DECIDE,M,N,PETSC_NULL,newmat);CHKERRQ(ierr); 105790ace30eSBarry Smith ierr = MatGetArray(*newmat,&array); CHKERRQ(ierr); 105890ace30eSBarry Smith 105990ace30eSBarry Smith if (!rank) { 106090ace30eSBarry Smith vals = (Scalar *) PetscMalloc( m*N*sizeof(Scalar) ); CHKPTRQ(vals); 106190ace30eSBarry Smith 106290ace30eSBarry Smith /* read in my part of the matrix numerical values */ 10630752156aSBarry Smith ierr = PetscBinaryRead(fd,vals,m*N,PETSC_SCALAR); CHKERRQ(ierr); 106490ace30eSBarry Smith 106590ace30eSBarry Smith /* insert into matrix-by row (this is why cannot directly read into array */ 106690ace30eSBarry Smith vals_ptr = vals; 106790ace30eSBarry Smith for ( i=0; i<m; i++ ) { 106890ace30eSBarry Smith for ( j=0; j<N; j++ ) { 106990ace30eSBarry Smith array[i + j*m] = *vals_ptr++; 107090ace30eSBarry Smith } 107190ace30eSBarry Smith } 107290ace30eSBarry Smith 107390ace30eSBarry Smith /* read in other processors and ship out */ 107490ace30eSBarry Smith for ( i=1; i<size; i++ ) { 107590ace30eSBarry Smith nz = (rowners[i+1] - rowners[i])*N; 10760752156aSBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR); CHKERRQ(ierr); 1077ca161407SBarry Smith ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,(*newmat)->tag,comm);CHKERRQ(ierr); 107890ace30eSBarry Smith } 10793a40ed3dSBarry Smith } else { 108090ace30eSBarry Smith /* receive numeric values */ 108190ace30eSBarry Smith vals = (Scalar*) PetscMalloc( m*N*sizeof(Scalar) ); CHKPTRQ(vals); 108290ace30eSBarry Smith 108390ace30eSBarry Smith /* receive message of values*/ 1084ca161407SBarry Smith ierr = MPI_Recv(vals,m*N,MPIU_SCALAR,0,(*newmat)->tag,comm,&status);CHKERRQ(ierr); 108590ace30eSBarry Smith 108690ace30eSBarry Smith /* insert into matrix-by row (this is why cannot directly read into array */ 108790ace30eSBarry Smith vals_ptr = vals; 108890ace30eSBarry Smith for ( i=0; i<m; i++ ) { 108990ace30eSBarry Smith for ( j=0; j<N; j++ ) { 109090ace30eSBarry Smith array[i + j*m] = *vals_ptr++; 109190ace30eSBarry Smith } 109290ace30eSBarry Smith } 109390ace30eSBarry Smith } 109490ace30eSBarry Smith PetscFree(rowners); 109590ace30eSBarry Smith PetscFree(vals); 10966d4a8577SBarry Smith ierr = MatAssemblyBegin(*newmat,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 10976d4a8577SBarry Smith ierr = MatAssemblyEnd(*newmat,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 10983a40ed3dSBarry Smith PetscFunctionReturn(0); 109990ace30eSBarry Smith } 110090ace30eSBarry Smith 110190ace30eSBarry Smith 11025615d1e5SSatish Balay #undef __FUNC__ 11035615d1e5SSatish Balay #define __FUNC__ "MatLoad_MPIDense" 110419bcc07fSBarry Smith int MatLoad_MPIDense(Viewer viewer,MatType type,Mat *newmat) 11058965ea79SLois Curfman McInnes { 11068965ea79SLois Curfman McInnes Mat A; 11078965ea79SLois Curfman McInnes Scalar *vals,*svals; 110819bcc07fSBarry Smith MPI_Comm comm = ((PetscObject)viewer)->comm; 11098965ea79SLois Curfman McInnes MPI_Status status; 11108965ea79SLois Curfman McInnes int header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,maxnz,*cols; 11118965ea79SLois Curfman McInnes int *ourlens,*sndcounts = 0,*procsnz = 0, *offlens,jj,*mycols,*smycols; 111219bcc07fSBarry Smith int tag = ((PetscObject)viewer)->tag; 11133a40ed3dSBarry Smith int i, nz, ierr, j,rstart, rend, fd; 11148965ea79SLois Curfman McInnes 11153a40ed3dSBarry Smith PetscFunctionBegin; 11168965ea79SLois Curfman McInnes MPI_Comm_size(comm,&size); MPI_Comm_rank(comm,&rank); 11178965ea79SLois Curfman McInnes if (!rank) { 111890ace30eSBarry Smith ierr = ViewerBinaryGetDescriptor(viewer,&fd); CHKERRQ(ierr); 11190752156aSBarry Smith ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT); CHKERRQ(ierr); 1120a8c6a408SBarry Smith if (header[0] != MAT_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"not matrix object"); 11218965ea79SLois Curfman McInnes } 11228965ea79SLois Curfman McInnes 1123ca161407SBarry Smith ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr); 112490ace30eSBarry Smith M = header[1]; N = header[2]; nz = header[3]; 112590ace30eSBarry Smith 112690ace30eSBarry Smith /* 112790ace30eSBarry Smith Handle case where matrix is stored on disk as a dense matrix 112890ace30eSBarry Smith */ 112990ace30eSBarry Smith if (nz == MATRIX_BINARY_FORMAT_DENSE) { 11303a40ed3dSBarry Smith ierr = MatLoad_MPIDense_DenseInFile(comm,fd,M,N,newmat);CHKERRQ(ierr); 11313a40ed3dSBarry Smith PetscFunctionReturn(0); 113290ace30eSBarry Smith } 113390ace30eSBarry Smith 11348965ea79SLois Curfman McInnes /* determine ownership of all rows */ 11358965ea79SLois Curfman McInnes m = M/size + ((M % size) > rank); 11360452661fSBarry Smith rowners = (int *) PetscMalloc((size+2)*sizeof(int)); CHKPTRQ(rowners); 1137ca161407SBarry Smith ierr = MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 11388965ea79SLois Curfman McInnes rowners[0] = 0; 11398965ea79SLois Curfman McInnes for ( i=2; i<=size; i++ ) { 11408965ea79SLois Curfman McInnes rowners[i] += rowners[i-1]; 11418965ea79SLois Curfman McInnes } 11428965ea79SLois Curfman McInnes rstart = rowners[rank]; 11438965ea79SLois Curfman McInnes rend = rowners[rank+1]; 11448965ea79SLois Curfman McInnes 11458965ea79SLois Curfman McInnes /* distribute row lengths to all processors */ 11460452661fSBarry Smith ourlens = (int*) PetscMalloc( 2*(rend-rstart)*sizeof(int) ); CHKPTRQ(ourlens); 11478965ea79SLois Curfman McInnes offlens = ourlens + (rend-rstart); 11488965ea79SLois Curfman McInnes if (!rank) { 11490452661fSBarry Smith rowlengths = (int*) PetscMalloc( M*sizeof(int) ); CHKPTRQ(rowlengths); 11500752156aSBarry Smith ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT); CHKERRQ(ierr); 11510452661fSBarry Smith sndcounts = (int*) PetscMalloc( size*sizeof(int) ); CHKPTRQ(sndcounts); 11528965ea79SLois Curfman McInnes for ( i=0; i<size; i++ ) sndcounts[i] = rowners[i+1] - rowners[i]; 1153ca161407SBarry Smith ierr = MPI_Scatterv(rowlengths,sndcounts,rowners,MPI_INT,ourlens,rend-rstart,MPI_INT,0,comm);CHKERRQ(ierr); 11540452661fSBarry Smith PetscFree(sndcounts); 1155ca161407SBarry Smith } else { 1156ca161407SBarry Smith ierr = MPI_Scatterv(0,0,0,MPI_INT,ourlens,rend-rstart,MPI_INT, 0,comm);CHKERRQ(ierr); 11578965ea79SLois Curfman McInnes } 11588965ea79SLois Curfman McInnes 11598965ea79SLois Curfman McInnes if (!rank) { 11608965ea79SLois Curfman McInnes /* calculate the number of nonzeros on each processor */ 11610452661fSBarry Smith procsnz = (int*) PetscMalloc( size*sizeof(int) ); CHKPTRQ(procsnz); 1162cddf8d76SBarry Smith PetscMemzero(procsnz,size*sizeof(int)); 11638965ea79SLois Curfman McInnes for ( i=0; i<size; i++ ) { 11648965ea79SLois Curfman McInnes for ( j=rowners[i]; j< rowners[i+1]; j++ ) { 11658965ea79SLois Curfman McInnes procsnz[i] += rowlengths[j]; 11668965ea79SLois Curfman McInnes } 11678965ea79SLois Curfman McInnes } 11680452661fSBarry Smith PetscFree(rowlengths); 11698965ea79SLois Curfman McInnes 11708965ea79SLois Curfman McInnes /* determine max buffer needed and allocate it */ 11718965ea79SLois Curfman McInnes maxnz = 0; 11728965ea79SLois Curfman McInnes for ( i=0; i<size; i++ ) { 11730452661fSBarry Smith maxnz = PetscMax(maxnz,procsnz[i]); 11748965ea79SLois Curfman McInnes } 11750452661fSBarry Smith cols = (int *) PetscMalloc( maxnz*sizeof(int) ); CHKPTRQ(cols); 11768965ea79SLois Curfman McInnes 11778965ea79SLois Curfman McInnes /* read in my part of the matrix column indices */ 11788965ea79SLois Curfman McInnes nz = procsnz[0]; 11790452661fSBarry Smith mycols = (int *) PetscMalloc( nz*sizeof(int) ); CHKPTRQ(mycols); 11800752156aSBarry Smith ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT); CHKERRQ(ierr); 11818965ea79SLois Curfman McInnes 11828965ea79SLois Curfman McInnes /* read in every one elses and ship off */ 11838965ea79SLois Curfman McInnes for ( i=1; i<size; i++ ) { 11848965ea79SLois Curfman McInnes nz = procsnz[i]; 11850752156aSBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT); CHKERRQ(ierr); 1186ca161407SBarry Smith ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr); 11878965ea79SLois Curfman McInnes } 11880452661fSBarry Smith PetscFree(cols); 11893a40ed3dSBarry Smith } else { 11908965ea79SLois Curfman McInnes /* determine buffer space needed for message */ 11918965ea79SLois Curfman McInnes nz = 0; 11928965ea79SLois Curfman McInnes for ( i=0; i<m; i++ ) { 11938965ea79SLois Curfman McInnes nz += ourlens[i]; 11948965ea79SLois Curfman McInnes } 11950452661fSBarry Smith mycols = (int*) PetscMalloc( nz*sizeof(int) ); CHKPTRQ(mycols); 11968965ea79SLois Curfman McInnes 11978965ea79SLois Curfman McInnes /* receive message of column indices*/ 1198ca161407SBarry Smith ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr); 1199ca161407SBarry Smith ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr); 1200a8c6a408SBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"something is wrong with file"); 12018965ea79SLois Curfman McInnes } 12028965ea79SLois Curfman McInnes 12038965ea79SLois Curfman McInnes /* loop over local rows, determining number of off diagonal entries */ 1204cddf8d76SBarry Smith PetscMemzero(offlens,m*sizeof(int)); 12058965ea79SLois Curfman McInnes jj = 0; 12068965ea79SLois Curfman McInnes for ( i=0; i<m; i++ ) { 12078965ea79SLois Curfman McInnes for ( j=0; j<ourlens[i]; j++ ) { 12088965ea79SLois Curfman McInnes if (mycols[jj] < rstart || mycols[jj] >= rend) offlens[i]++; 12098965ea79SLois Curfman McInnes jj++; 12108965ea79SLois Curfman McInnes } 12118965ea79SLois Curfman McInnes } 12128965ea79SLois Curfman McInnes 12138965ea79SLois Curfman McInnes /* create our matrix */ 12148965ea79SLois Curfman McInnes for ( i=0; i<m; i++ ) { 12158965ea79SLois Curfman McInnes ourlens[i] -= offlens[i]; 12168965ea79SLois Curfman McInnes } 1217b4fd4287SBarry Smith ierr = MatCreateMPIDense(comm,m,PETSC_DECIDE,M,N,PETSC_NULL,newmat);CHKERRQ(ierr); 12188965ea79SLois Curfman McInnes A = *newmat; 12198965ea79SLois Curfman McInnes for ( i=0; i<m; i++ ) { 12208965ea79SLois Curfman McInnes ourlens[i] += offlens[i]; 12218965ea79SLois Curfman McInnes } 12228965ea79SLois Curfman McInnes 12238965ea79SLois Curfman McInnes if (!rank) { 12240452661fSBarry Smith vals = (Scalar *) PetscMalloc( maxnz*sizeof(Scalar) ); CHKPTRQ(vals); 12258965ea79SLois Curfman McInnes 12268965ea79SLois Curfman McInnes /* read in my part of the matrix numerical values */ 12278965ea79SLois Curfman McInnes nz = procsnz[0]; 12280752156aSBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR); CHKERRQ(ierr); 12298965ea79SLois Curfman McInnes 12308965ea79SLois Curfman McInnes /* insert into matrix */ 12318965ea79SLois Curfman McInnes jj = rstart; 12328965ea79SLois Curfman McInnes smycols = mycols; 12338965ea79SLois Curfman McInnes svals = vals; 12348965ea79SLois Curfman McInnes for ( i=0; i<m; i++ ) { 12358965ea79SLois Curfman McInnes ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 12368965ea79SLois Curfman McInnes smycols += ourlens[i]; 12378965ea79SLois Curfman McInnes svals += ourlens[i]; 12388965ea79SLois Curfman McInnes jj++; 12398965ea79SLois Curfman McInnes } 12408965ea79SLois Curfman McInnes 12418965ea79SLois Curfman McInnes /* read in other processors and ship out */ 12428965ea79SLois Curfman McInnes for ( i=1; i<size; i++ ) { 12438965ea79SLois Curfman McInnes nz = procsnz[i]; 12440752156aSBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR); CHKERRQ(ierr); 1245ca161407SBarry Smith ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 12468965ea79SLois Curfman McInnes } 12470452661fSBarry Smith PetscFree(procsnz); 12483a40ed3dSBarry Smith } else { 12498965ea79SLois Curfman McInnes /* receive numeric values */ 12500452661fSBarry Smith vals = (Scalar*) PetscMalloc( nz*sizeof(Scalar) ); CHKPTRQ(vals); 12518965ea79SLois Curfman McInnes 12528965ea79SLois Curfman McInnes /* receive message of values*/ 1253ca161407SBarry Smith ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 1254ca161407SBarry Smith ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 1255a8c6a408SBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"something is wrong with file"); 12568965ea79SLois Curfman McInnes 12578965ea79SLois Curfman McInnes /* insert into matrix */ 12588965ea79SLois Curfman McInnes jj = rstart; 12598965ea79SLois Curfman McInnes smycols = mycols; 12608965ea79SLois Curfman McInnes svals = vals; 12618965ea79SLois Curfman McInnes for ( i=0; i<m; i++ ) { 12628965ea79SLois Curfman McInnes ierr = MatSetValues(A,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 12638965ea79SLois Curfman McInnes smycols += ourlens[i]; 12648965ea79SLois Curfman McInnes svals += ourlens[i]; 12658965ea79SLois Curfman McInnes jj++; 12668965ea79SLois Curfman McInnes } 12678965ea79SLois Curfman McInnes } 12680452661fSBarry Smith PetscFree(ourlens); PetscFree(vals); PetscFree(mycols); PetscFree(rowners); 12698965ea79SLois Curfman McInnes 12706d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 12716d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 12723a40ed3dSBarry Smith PetscFunctionReturn(0); 12738965ea79SLois Curfman McInnes } 127490ace30eSBarry Smith 127590ace30eSBarry Smith 127690ace30eSBarry Smith 127790ace30eSBarry Smith 127890ace30eSBarry Smith 1279