1be1d678aSKris Buschelman 2ed3cc1f0SBarry Smith /* 3ed3cc1f0SBarry Smith Basic functions for basic parallel dense matrices. 4ed3cc1f0SBarry Smith */ 5ed3cc1f0SBarry Smith 6c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h> /*I "petscmat.h" I*/ 78949adfdSHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 8baa3c1c6SHong Zhang #include <petscblaslapack.h> 98965ea79SLois Curfman McInnes 10ab92ecdeSBarry Smith /*@ 11ab92ecdeSBarry Smith 12ab92ecdeSBarry Smith MatDenseGetLocalMatrix - For a MATMPIDENSE or MATSEQDENSE matrix returns the sequential 13ab92ecdeSBarry Smith matrix that represents the operator. For sequential matrices it returns itself. 14ab92ecdeSBarry Smith 15ab92ecdeSBarry Smith Input Parameter: 16ab92ecdeSBarry Smith . A - the Seq or MPI dense matrix 17ab92ecdeSBarry Smith 18ab92ecdeSBarry Smith Output Parameter: 19ab92ecdeSBarry Smith . B - the inner matrix 20ab92ecdeSBarry Smith 218e6c10adSSatish Balay Level: intermediate 228e6c10adSSatish Balay 23ab92ecdeSBarry Smith @*/ 24ab92ecdeSBarry Smith PetscErrorCode MatDenseGetLocalMatrix(Mat A,Mat *B) 25ab92ecdeSBarry Smith { 26ab92ecdeSBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 27ace3abfcSBarry Smith PetscBool flg; 28ab92ecdeSBarry Smith 29ab92ecdeSBarry Smith PetscFunctionBegin; 30d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 31d5ea218eSStefano Zampini PetscValidPointer(B,2); 329566063dSJacob Faibussowitsch PetscCall(PetscObjectBaseTypeCompare((PetscObject)A,MATMPIDENSE,&flg)); 332205254eSKarl Rupp if (flg) *B = mat->A; 34f140bc17SStefano Zampini else { 359566063dSJacob Faibussowitsch PetscCall(PetscObjectBaseTypeCompare((PetscObject)A,MATSEQDENSE,&flg)); 3628b400f6SJacob Faibussowitsch PetscCheck(flg,PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Not for matrix type %s",((PetscObject)A)->type_name); 37f140bc17SStefano Zampini *B = A; 38f140bc17SStefano Zampini } 39ab92ecdeSBarry Smith PetscFunctionReturn(0); 40ab92ecdeSBarry Smith } 41ab92ecdeSBarry Smith 42a76f77c3SStefano Zampini PetscErrorCode MatCopy_MPIDense(Mat A, Mat B, MatStructure s) 43a76f77c3SStefano Zampini { 44a76f77c3SStefano Zampini Mat_MPIDense *Amat = (Mat_MPIDense*)A->data; 45a76f77c3SStefano Zampini Mat_MPIDense *Bmat = (Mat_MPIDense*)B->data; 46a76f77c3SStefano Zampini 47a76f77c3SStefano Zampini PetscFunctionBegin; 489566063dSJacob Faibussowitsch PetscCall(MatCopy(Amat->A,Bmat->A,s)); 49a76f77c3SStefano Zampini PetscFunctionReturn(0); 50a76f77c3SStefano Zampini } 51a76f77c3SStefano Zampini 522f605a99SJose E. Roman PetscErrorCode MatShift_MPIDense(Mat A,PetscScalar alpha) 532f605a99SJose E. Roman { 542f605a99SJose E. Roman Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 552f605a99SJose E. Roman PetscInt j,lda,rstart = A->rmap->rstart,rend = A->rmap->rend,rend2; 562f605a99SJose E. Roman PetscScalar *v; 572f605a99SJose E. Roman 582f605a99SJose E. Roman PetscFunctionBegin; 592f605a99SJose E. Roman PetscCall(MatDenseGetArray(mat->A,&v)); 602f605a99SJose E. Roman PetscCall(MatDenseGetLDA(mat->A,&lda)); 612f605a99SJose E. Roman rend2 = PetscMin(rend,A->cmap->N); 622f605a99SJose E. Roman if (rend2>rstart) { 632f605a99SJose E. Roman for (j=rstart; j<rend2; j++) v[j-rstart+j*lda] += alpha; 642f605a99SJose E. Roman PetscCall(PetscLogFlops(rend2-rstart)); 652f605a99SJose E. Roman } 662f605a99SJose E. Roman PetscCall(MatDenseRestoreArray(mat->A,&v)); 672f605a99SJose E. Roman PetscFunctionReturn(0); 682f605a99SJose E. Roman } 692f605a99SJose E. Roman 70ba8c8a56SBarry Smith PetscErrorCode MatGetRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 71ba8c8a56SBarry Smith { 72ba8c8a56SBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 73d0f46423SBarry Smith PetscInt lrow,rstart = A->rmap->rstart,rend = A->rmap->rend; 74ba8c8a56SBarry Smith 75ba8c8a56SBarry Smith PetscFunctionBegin; 76aed4548fSBarry Smith PetscCheck(row >= rstart && row < rend,PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows"); 77ba8c8a56SBarry Smith lrow = row - rstart; 789566063dSJacob Faibussowitsch PetscCall(MatGetRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v)); 79ba8c8a56SBarry Smith PetscFunctionReturn(0); 80ba8c8a56SBarry Smith } 81ba8c8a56SBarry Smith 82637a0070SStefano Zampini PetscErrorCode MatRestoreRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 83ba8c8a56SBarry Smith { 84637a0070SStefano Zampini Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 85637a0070SStefano Zampini PetscInt lrow,rstart = A->rmap->rstart,rend = A->rmap->rend; 86ba8c8a56SBarry Smith 87ba8c8a56SBarry Smith PetscFunctionBegin; 88aed4548fSBarry Smith PetscCheck(row >= rstart && row < rend,PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows"); 89637a0070SStefano Zampini lrow = row - rstart; 909566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v)); 91ba8c8a56SBarry Smith PetscFunctionReturn(0); 92ba8c8a56SBarry Smith } 93ba8c8a56SBarry Smith 9411bd1e4dSLisandro Dalcin PetscErrorCode MatGetDiagonalBlock_MPIDense(Mat A,Mat *a) 950de54da6SSatish Balay { 960de54da6SSatish Balay Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 97d0f46423SBarry Smith PetscInt m = A->rmap->n,rstart = A->rmap->rstart; 9887828ca2SBarry Smith PetscScalar *array; 990de54da6SSatish Balay MPI_Comm comm; 1004b6ae80fSStefano Zampini PetscBool flg; 10111bd1e4dSLisandro Dalcin Mat B; 1020de54da6SSatish Balay 1030de54da6SSatish Balay PetscFunctionBegin; 1049566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A,&flg)); 10528b400f6SJacob Faibussowitsch PetscCheck(flg,PETSC_COMM_SELF,PETSC_ERR_SUP,"Only square matrices supported."); 1069566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)A,"DiagonalBlock",(PetscObject*)&B)); 107616b8fbbSStefano Zampini if (!B) { /* This should use MatDenseGetSubMatrix (not create), but we would need a call like MatRestoreDiagonalBlock */ 1084b6ae80fSStefano Zampini 1099566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)mdn->A,MATSEQDENSECUDA,&flg)); 11028b400f6SJacob Faibussowitsch PetscCheck(!flg,PETSC_COMM_SELF,PETSC_ERR_SUP,"Not coded for %s. Send an email to petsc-dev@mcs.anl.gov to request this feature",MATSEQDENSECUDA); 1119566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)(mdn->A),&comm)); 1129566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,&B)); 1139566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B,m,m,m,m)); 1149566063dSJacob Faibussowitsch PetscCall(MatSetType(B,((PetscObject)mdn->A)->type_name)); 1159566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(mdn->A,(const PetscScalar**)&array)); 1169566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(B,array+m*rstart)); 1179566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(mdn->A,(const PetscScalar**)&array)); 1189566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)A,"DiagonalBlock",(PetscObject)B)); 11911bd1e4dSLisandro Dalcin *a = B; 1209566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 1212205254eSKarl Rupp } else *a = B; 1220de54da6SSatish Balay PetscFunctionReturn(0); 1230de54da6SSatish Balay } 1240de54da6SSatish Balay 12513f74950SBarry Smith PetscErrorCode MatSetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],const PetscScalar v[],InsertMode addv) 1268965ea79SLois Curfman McInnes { 12739b7565bSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)mat->data; 128d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 129ace3abfcSBarry Smith PetscBool roworiented = A->roworiented; 1308965ea79SLois Curfman McInnes 1313a40ed3dSBarry Smith PetscFunctionBegin; 1328965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 1335ef9f2a5SBarry Smith if (idxm[i] < 0) continue; 13408401ef6SPierre Jolivet PetscCheck(idxm[i] < mat->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 1358965ea79SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 1368965ea79SLois Curfman McInnes row = idxm[i] - rstart; 13739b7565bSBarry Smith if (roworiented) { 1389566063dSJacob Faibussowitsch PetscCall(MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv)); 1393a40ed3dSBarry Smith } else { 1408965ea79SLois Curfman McInnes for (j=0; j<n; j++) { 1415ef9f2a5SBarry Smith if (idxn[j] < 0) continue; 14208401ef6SPierre Jolivet PetscCheck(idxn[j] < mat->cmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 1439566063dSJacob Faibussowitsch PetscCall(MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv)); 14439b7565bSBarry Smith } 1458965ea79SLois Curfman McInnes } 1462205254eSKarl Rupp } else if (!A->donotstash) { 1475080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 14839b7565bSBarry Smith if (roworiented) { 1499566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash,idxm[i],n,idxn,v+i*n,PETSC_FALSE)); 150d36fbae8SSatish Balay } else { 1519566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash,idxm[i],n,idxn,v+i,m,PETSC_FALSE)); 15239b7565bSBarry Smith } 153b49de8d1SLois Curfman McInnes } 154b49de8d1SLois Curfman McInnes } 1553a40ed3dSBarry Smith PetscFunctionReturn(0); 156b49de8d1SLois Curfman McInnes } 157b49de8d1SLois Curfman McInnes 15813f74950SBarry Smith PetscErrorCode MatGetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 159b49de8d1SLois Curfman McInnes { 160b49de8d1SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 161d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 162b49de8d1SLois Curfman McInnes 1633a40ed3dSBarry Smith PetscFunctionBegin; 164b49de8d1SLois Curfman McInnes for (i=0; i<m; i++) { 16554c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 16654c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 167b49de8d1SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 168b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 169b49de8d1SLois Curfman McInnes for (j=0; j<n; j++) { 17054c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 17154c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 1729566063dSJacob Faibussowitsch PetscCall(MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j)); 173b49de8d1SLois Curfman McInnes } 174e7e72b3dSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 1758965ea79SLois Curfman McInnes } 1763a40ed3dSBarry Smith PetscFunctionReturn(0); 1778965ea79SLois Curfman McInnes } 1788965ea79SLois Curfman McInnes 17949a6ff4bSBarry Smith static PetscErrorCode MatDenseGetLDA_MPIDense(Mat A,PetscInt *lda) 18049a6ff4bSBarry Smith { 18149a6ff4bSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 18249a6ff4bSBarry Smith 18349a6ff4bSBarry Smith PetscFunctionBegin; 1849566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,lda)); 18549a6ff4bSBarry Smith PetscFunctionReturn(0); 18649a6ff4bSBarry Smith } 18749a6ff4bSBarry Smith 188ad16ce7aSStefano Zampini static PetscErrorCode MatDenseSetLDA_MPIDense(Mat A,PetscInt lda) 189ad16ce7aSStefano Zampini { 190ad16ce7aSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 19117359960SJose E. Roman PetscBool iscuda; 192ad16ce7aSStefano Zampini 193ad16ce7aSStefano Zampini PetscFunctionBegin; 19417359960SJose E. Roman if (!a->A) { 19528b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1969566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->rmap)); 1979566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->cmap)); 1989566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF,&a->A)); 1999566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)a->A)); 2009566063dSJacob Faibussowitsch PetscCall(MatSetSizes(a->A,A->rmap->n,A->cmap->N,A->rmap->n,A->cmap->N)); 2019566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A,MATMPIDENSECUDA,&iscuda)); 2029566063dSJacob Faibussowitsch PetscCall(MatSetType(a->A,iscuda ? MATSEQDENSECUDA : MATSEQDENSE)); 20317359960SJose E. Roman } 2049566063dSJacob Faibussowitsch PetscCall(MatDenseSetLDA(a->A,lda)); 205ad16ce7aSStefano Zampini PetscFunctionReturn(0); 206ad16ce7aSStefano Zampini } 207ad16ce7aSStefano Zampini 208637a0070SStefano Zampini static PetscErrorCode MatDenseGetArray_MPIDense(Mat A,PetscScalar **array) 209ff14e315SSatish Balay { 210ff14e315SSatish Balay Mat_MPIDense *a = (Mat_MPIDense*)A->data; 211ff14e315SSatish Balay 2123a40ed3dSBarry Smith PetscFunctionBegin; 21328b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2149566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(a->A,array)); 2153a40ed3dSBarry Smith PetscFunctionReturn(0); 216ff14e315SSatish Balay } 217ff14e315SSatish Balay 218637a0070SStefano Zampini static PetscErrorCode MatDenseGetArrayRead_MPIDense(Mat A,const PetscScalar **array) 2198572280aSBarry Smith { 2208572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 2218572280aSBarry Smith 2228572280aSBarry Smith PetscFunctionBegin; 22328b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2249566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A,array)); 2258572280aSBarry Smith PetscFunctionReturn(0); 2268572280aSBarry Smith } 2278572280aSBarry Smith 2286947451fSStefano Zampini static PetscErrorCode MatDenseGetArrayWrite_MPIDense(Mat A,PetscScalar **array) 2296947451fSStefano Zampini { 2306947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 2316947451fSStefano Zampini 2326947451fSStefano Zampini PetscFunctionBegin; 23328b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2349566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(a->A,array)); 2356947451fSStefano Zampini PetscFunctionReturn(0); 2366947451fSStefano Zampini } 2376947451fSStefano Zampini 238637a0070SStefano Zampini static PetscErrorCode MatDensePlaceArray_MPIDense(Mat A,const PetscScalar *array) 239d3042a70SBarry Smith { 240d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 241d3042a70SBarry Smith 242d3042a70SBarry Smith PetscFunctionBegin; 24328b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 24428b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2459566063dSJacob Faibussowitsch PetscCall(MatDensePlaceArray(a->A,array)); 246d3042a70SBarry Smith PetscFunctionReturn(0); 247d3042a70SBarry Smith } 248d3042a70SBarry Smith 249d3042a70SBarry Smith static PetscErrorCode MatDenseResetArray_MPIDense(Mat A) 250d3042a70SBarry Smith { 251d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 252d3042a70SBarry Smith 253d3042a70SBarry Smith PetscFunctionBegin; 25428b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 25528b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2569566063dSJacob Faibussowitsch PetscCall(MatDenseResetArray(a->A)); 257d3042a70SBarry Smith PetscFunctionReturn(0); 258d3042a70SBarry Smith } 259d3042a70SBarry Smith 260d5ea218eSStefano Zampini static PetscErrorCode MatDenseReplaceArray_MPIDense(Mat A,const PetscScalar *array) 261d5ea218eSStefano Zampini { 262d5ea218eSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 263d5ea218eSStefano Zampini 264d5ea218eSStefano Zampini PetscFunctionBegin; 26528b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 26628b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2679566063dSJacob Faibussowitsch PetscCall(MatDenseReplaceArray(a->A,array)); 268d5ea218eSStefano Zampini PetscFunctionReturn(0); 269d5ea218eSStefano Zampini } 270d5ea218eSStefano Zampini 2717dae84e0SHong Zhang static PetscErrorCode MatCreateSubMatrix_MPIDense(Mat A,IS isrow,IS iscol,MatReuse scall,Mat *B) 272ca3fa75bSLois Curfman McInnes { 273ca3fa75bSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data,*newmatd; 274637a0070SStefano Zampini PetscInt lda,i,j,rstart,rend,nrows,ncols,Ncols,nlrows,nlcols; 2755d0c19d7SBarry Smith const PetscInt *irow,*icol; 276637a0070SStefano Zampini const PetscScalar *v; 277637a0070SStefano Zampini PetscScalar *bv; 278ca3fa75bSLois Curfman McInnes Mat newmat; 2794aa3045dSJed Brown IS iscol_local; 28042a884f0SBarry Smith MPI_Comm comm_is,comm_mat; 281ca3fa75bSLois Curfman McInnes 282ca3fa75bSLois Curfman McInnes PetscFunctionBegin; 2839566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A,&comm_mat)); 2849566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)iscol,&comm_is)); 28508401ef6SPierre Jolivet PetscCheck(comm_mat == comm_is,PETSC_COMM_SELF,PETSC_ERR_ARG_NOTSAMECOMM,"IS communicator must match matrix communicator"); 28642a884f0SBarry Smith 2879566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol,&iscol_local)); 2889566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isrow,&irow)); 2899566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_local,&icol)); 2909566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow,&nrows)); 2919566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol,&ncols)); 2929566063dSJacob Faibussowitsch PetscCall(ISGetSize(iscol,&Ncols)); /* global number of columns, size of iscol_local */ 293ca3fa75bSLois Curfman McInnes 294ca3fa75bSLois Curfman McInnes /* No parallel redistribution currently supported! Should really check each index set 2957eba5e9cSLois Curfman McInnes to comfirm that it is OK. ... Currently supports only submatrix same partitioning as 2967eba5e9cSLois Curfman McInnes original matrix! */ 297ca3fa75bSLois Curfman McInnes 2989566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A,&nlrows,&nlcols)); 2999566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A,&rstart,&rend)); 300ca3fa75bSLois Curfman McInnes 301ca3fa75bSLois Curfman McInnes /* Check submatrix call */ 302ca3fa75bSLois Curfman McInnes if (scall == MAT_REUSE_MATRIX) { 303e32f2f54SBarry Smith /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */ 3047eba5e9cSLois Curfman McInnes /* Really need to test rows and column sizes! */ 305ca3fa75bSLois Curfman McInnes newmat = *B; 306ca3fa75bSLois Curfman McInnes } else { 307ca3fa75bSLois Curfman McInnes /* Create and fill new matrix */ 3089566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&newmat)); 3099566063dSJacob Faibussowitsch PetscCall(MatSetSizes(newmat,nrows,ncols,PETSC_DECIDE,Ncols)); 3109566063dSJacob Faibussowitsch PetscCall(MatSetType(newmat,((PetscObject)A)->type_name)); 3119566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(newmat,NULL)); 312ca3fa75bSLois Curfman McInnes } 313ca3fa75bSLois Curfman McInnes 314ca3fa75bSLois Curfman McInnes /* Now extract the data pointers and do the copy, column at a time */ 315ca3fa75bSLois Curfman McInnes newmatd = (Mat_MPIDense*)newmat->data; 3169566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(newmatd->A,&bv)); 3179566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(mat->A,&v)); 3189566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(mat->A,&lda)); 3194aa3045dSJed Brown for (i=0; i<Ncols; i++) { 320637a0070SStefano Zampini const PetscScalar *av = v + lda*icol[i]; 321ca3fa75bSLois Curfman McInnes for (j=0; j<nrows; j++) { 3227eba5e9cSLois Curfman McInnes *bv++ = av[irow[j] - rstart]; 323ca3fa75bSLois Curfman McInnes } 324ca3fa75bSLois Curfman McInnes } 3259566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(mat->A,&v)); 3269566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(newmatd->A,&bv)); 327ca3fa75bSLois Curfman McInnes 328ca3fa75bSLois Curfman McInnes /* Assemble the matrices so that the correct flags are set */ 3299566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY)); 3309566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY)); 331ca3fa75bSLois Curfman McInnes 332ca3fa75bSLois Curfman McInnes /* Free work space */ 3339566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isrow,&irow)); 3349566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_local,&icol)); 3359566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 336ca3fa75bSLois Curfman McInnes *B = newmat; 337ca3fa75bSLois Curfman McInnes PetscFunctionReturn(0); 338ca3fa75bSLois Curfman McInnes } 339ca3fa75bSLois Curfman McInnes 340637a0070SStefano Zampini PetscErrorCode MatDenseRestoreArray_MPIDense(Mat A,PetscScalar **array) 341ff14e315SSatish Balay { 34273a71a0fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 34373a71a0fSBarry Smith 3443a40ed3dSBarry Smith PetscFunctionBegin; 3459566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(a->A,array)); 3463a40ed3dSBarry Smith PetscFunctionReturn(0); 347ff14e315SSatish Balay } 348ff14e315SSatish Balay 349637a0070SStefano Zampini PetscErrorCode MatDenseRestoreArrayRead_MPIDense(Mat A,const PetscScalar **array) 3508572280aSBarry Smith { 3518572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 3528572280aSBarry Smith 3538572280aSBarry Smith PetscFunctionBegin; 3549566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A,array)); 3558572280aSBarry Smith PetscFunctionReturn(0); 3568572280aSBarry Smith } 3578572280aSBarry Smith 3586947451fSStefano Zampini PetscErrorCode MatDenseRestoreArrayWrite_MPIDense(Mat A,PetscScalar **array) 3596947451fSStefano Zampini { 3606947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 3616947451fSStefano Zampini 3626947451fSStefano Zampini PetscFunctionBegin; 3639566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(a->A,array)); 3646947451fSStefano Zampini PetscFunctionReturn(0); 3656947451fSStefano Zampini } 3666947451fSStefano Zampini 367dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode) 3688965ea79SLois Curfman McInnes { 36939ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 37013f74950SBarry Smith PetscInt nstash,reallocs; 3718965ea79SLois Curfman McInnes 3723a40ed3dSBarry Smith PetscFunctionBegin; 3734067683fSStefano Zampini if (mdn->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 3748965ea79SLois Curfman McInnes 3759566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range)); 3769566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs)); 3779566063dSJacob Faibussowitsch PetscCall(PetscInfo(mdn->A,"Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n",nstash,reallocs)); 3783a40ed3dSBarry Smith PetscFunctionReturn(0); 3798965ea79SLois Curfman McInnes } 3808965ea79SLois Curfman McInnes 381dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode) 3828965ea79SLois Curfman McInnes { 38339ddd567SLois Curfman McInnes Mat_MPIDense *mdn=(Mat_MPIDense*)mat->data; 38413f74950SBarry Smith PetscInt i,*row,*col,flg,j,rstart,ncols; 38513f74950SBarry Smith PetscMPIInt n; 38687828ca2SBarry Smith PetscScalar *val; 3878965ea79SLois Curfman McInnes 3883a40ed3dSBarry Smith PetscFunctionBegin; 389910cf402Sprj- if (!mdn->donotstash && !mat->nooffprocentries) { 3908965ea79SLois Curfman McInnes /* wait on receives */ 3917ef1d9bdSSatish Balay while (1) { 3929566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg)); 3937ef1d9bdSSatish Balay if (!flg) break; 3948965ea79SLois Curfman McInnes 3957ef1d9bdSSatish Balay for (i=0; i<n;) { 3967ef1d9bdSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 3972205254eSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 3982205254eSKarl Rupp if (row[j] != rstart) break; 3992205254eSKarl Rupp } 4007ef1d9bdSSatish Balay if (j < n) ncols = j-i; 4017ef1d9bdSSatish Balay else ncols = n-i; 4027ef1d9bdSSatish Balay /* Now assemble all these values with a single function call */ 4039566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,mat->insertmode)); 4047ef1d9bdSSatish Balay i = j; 4058965ea79SLois Curfman McInnes } 4067ef1d9bdSSatish Balay } 4079566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 408910cf402Sprj- } 4098965ea79SLois Curfman McInnes 4109566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mdn->A,mode)); 4119566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mdn->A,mode)); 4123a40ed3dSBarry Smith PetscFunctionReturn(0); 4138965ea79SLois Curfman McInnes } 4148965ea79SLois Curfman McInnes 415dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIDense(Mat A) 4168965ea79SLois Curfman McInnes { 41739ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 4183a40ed3dSBarry Smith 4193a40ed3dSBarry Smith PetscFunctionBegin; 4209566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 4213a40ed3dSBarry Smith PetscFunctionReturn(0); 4228965ea79SLois Curfman McInnes } 4238965ea79SLois Curfman McInnes 424637a0070SStefano Zampini PetscErrorCode MatZeroRows_MPIDense(Mat A,PetscInt n,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 4258965ea79SLois Curfman McInnes { 42639ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 427637a0070SStefano Zampini PetscInt i,len,*lrows; 428637a0070SStefano Zampini 429637a0070SStefano Zampini PetscFunctionBegin; 430637a0070SStefano Zampini /* get locally owned rows */ 4319566063dSJacob Faibussowitsch PetscCall(PetscLayoutMapLocal(A->rmap,n,rows,&len,&lrows,NULL)); 432637a0070SStefano Zampini /* fix right hand side if needed */ 433637a0070SStefano Zampini if (x && b) { 43497b48c8fSBarry Smith const PetscScalar *xx; 43597b48c8fSBarry Smith PetscScalar *bb; 4368965ea79SLois Curfman McInnes 4379566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 4389566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(b, &bb)); 439637a0070SStefano Zampini for (i=0;i<len;++i) bb[lrows[i]] = diag*xx[lrows[i]]; 4409566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 4419566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(b, &bb)); 44297b48c8fSBarry Smith } 4439566063dSJacob Faibussowitsch PetscCall(MatZeroRows(l->A,len,lrows,0.0,NULL,NULL)); 444e2eb51b1SBarry Smith if (diag != 0.0) { 445637a0070SStefano Zampini Vec d; 446b9679d65SBarry Smith 4479566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(A,NULL,&d)); 4489566063dSJacob Faibussowitsch PetscCall(VecSet(d,diag)); 4499566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet(A,d,INSERT_VALUES)); 4509566063dSJacob Faibussowitsch PetscCall(VecDestroy(&d)); 451b9679d65SBarry Smith } 4529566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 4533a40ed3dSBarry Smith PetscFunctionReturn(0); 4548965ea79SLois Curfman McInnes } 4558965ea79SLois Curfman McInnes 456cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMult_SeqDense(Mat,Vec,Vec); 457cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultAdd_SeqDense(Mat,Vec,Vec,Vec); 458cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTranspose_SeqDense(Mat,Vec,Vec); 459cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTransposeAdd_SeqDense(Mat,Vec,Vec,Vec); 460cc2e6a90SBarry Smith 461dfbe8321SBarry Smith PetscErrorCode MatMult_MPIDense(Mat mat,Vec xx,Vec yy) 4628965ea79SLois Curfman McInnes { 46339ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 464637a0070SStefano Zampini const PetscScalar *ax; 465637a0070SStefano Zampini PetscScalar *ay; 466d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 467c456f294SBarry Smith 4683a40ed3dSBarry Smith PetscFunctionBegin; 4696f08ad05SPierre Jolivet if (!mdn->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(mat)); 4709566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(xx,&ax,&axmtype)); 4719566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(mdn->lvec,&ay,&aymtype)); 4729566063dSJacob Faibussowitsch PetscCall(PetscSFBcastWithMemTypeBegin(mdn->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPI_REPLACE)); 4739566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ax,ay,MPI_REPLACE)); 4749566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(mdn->lvec,&ay)); 4759566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(xx,&ax)); 4769566063dSJacob Faibussowitsch PetscCall((*mdn->A->ops->mult)(mdn->A,mdn->lvec,yy)); 4773a40ed3dSBarry Smith PetscFunctionReturn(0); 4788965ea79SLois Curfman McInnes } 4798965ea79SLois Curfman McInnes 480dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz) 4818965ea79SLois Curfman McInnes { 48239ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 483637a0070SStefano Zampini const PetscScalar *ax; 484637a0070SStefano Zampini PetscScalar *ay; 485d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 486c456f294SBarry Smith 4873a40ed3dSBarry Smith PetscFunctionBegin; 4886f08ad05SPierre Jolivet if (!mdn->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(mat)); 4899566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(xx,&ax,&axmtype)); 4909566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(mdn->lvec,&ay,&aymtype)); 4919566063dSJacob Faibussowitsch PetscCall(PetscSFBcastWithMemTypeBegin(mdn->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPI_REPLACE)); 4929566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ax,ay,MPI_REPLACE)); 4939566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(mdn->lvec,&ay)); 4949566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(xx,&ax)); 4959566063dSJacob Faibussowitsch PetscCall((*mdn->A->ops->multadd)(mdn->A,mdn->lvec,yy,zz)); 4963a40ed3dSBarry Smith PetscFunctionReturn(0); 4978965ea79SLois Curfman McInnes } 4988965ea79SLois Curfman McInnes 499dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIDense(Mat A,Vec xx,Vec yy) 500096963f5SLois Curfman McInnes { 501096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 502637a0070SStefano Zampini const PetscScalar *ax; 503637a0070SStefano Zampini PetscScalar *ay; 504d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 505096963f5SLois Curfman McInnes 5063a40ed3dSBarry Smith PetscFunctionBegin; 5076f08ad05SPierre Jolivet if (!a->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); 5089566063dSJacob Faibussowitsch PetscCall(VecSet(yy,0.0)); 5099566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A,xx,a->lvec)); 5109566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(a->lvec,&ax,&axmtype)); 5119566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(yy,&ay,&aymtype)); 5129566063dSJacob Faibussowitsch PetscCall(PetscSFReduceWithMemTypeBegin(a->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPIU_SUM)); 5139566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM)); 5149566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(a->lvec,&ax)); 5159566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(yy,&ay)); 5163a40ed3dSBarry Smith PetscFunctionReturn(0); 517096963f5SLois Curfman McInnes } 518096963f5SLois Curfman McInnes 519dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz) 520096963f5SLois Curfman McInnes { 521096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 522637a0070SStefano Zampini const PetscScalar *ax; 523637a0070SStefano Zampini PetscScalar *ay; 524d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 525096963f5SLois Curfman McInnes 5263a40ed3dSBarry Smith PetscFunctionBegin; 5276f08ad05SPierre Jolivet if (!a->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); 5289566063dSJacob Faibussowitsch PetscCall(VecCopy(yy,zz)); 5299566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A,xx,a->lvec)); 5309566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(a->lvec,&ax,&axmtype)); 5319566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(zz,&ay,&aymtype)); 5329566063dSJacob Faibussowitsch PetscCall(PetscSFReduceWithMemTypeBegin(a->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPIU_SUM)); 5339566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM)); 5349566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(a->lvec,&ax)); 5359566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(zz,&ay)); 5363a40ed3dSBarry Smith PetscFunctionReturn(0); 537096963f5SLois Curfman McInnes } 538096963f5SLois Curfman McInnes 539dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIDense(Mat A,Vec v) 5408965ea79SLois Curfman McInnes { 54139ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 542637a0070SStefano Zampini PetscInt lda,len,i,n,m = A->rmap->n,radd; 54387828ca2SBarry Smith PetscScalar *x,zero = 0.0; 544637a0070SStefano Zampini const PetscScalar *av; 545ed3cc1f0SBarry Smith 5463a40ed3dSBarry Smith PetscFunctionBegin; 5479566063dSJacob Faibussowitsch PetscCall(VecSet(v,zero)); 5489566063dSJacob Faibussowitsch PetscCall(VecGetArray(v,&x)); 5499566063dSJacob Faibussowitsch PetscCall(VecGetSize(v,&n)); 55008401ef6SPierre Jolivet PetscCheck(n == A->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec"); 551d0f46423SBarry Smith len = PetscMin(a->A->rmap->n,a->A->cmap->n); 552d0f46423SBarry Smith radd = A->rmap->rstart*m; 5539566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A,&av)); 5549566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 55544cd7ae7SLois Curfman McInnes for (i=0; i<len; i++) { 556637a0070SStefano Zampini x[i] = av[radd + i*lda + i]; 557096963f5SLois Curfman McInnes } 5589566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A,&av)); 5599566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v,&x)); 5603a40ed3dSBarry Smith PetscFunctionReturn(0); 5618965ea79SLois Curfman McInnes } 5628965ea79SLois Curfman McInnes 563dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIDense(Mat mat) 5648965ea79SLois Curfman McInnes { 5653501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 566ed3cc1f0SBarry Smith 5673a40ed3dSBarry Smith PetscFunctionBegin; 568aa482453SBarry Smith #if defined(PETSC_USE_LOG) 569c0aa6a63SJacob Faibussowitsch PetscLogObjectState((PetscObject)mat,"Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT,mat->rmap->N,mat->cmap->N); 5708965ea79SLois Curfman McInnes #endif 5719566063dSJacob Faibussowitsch PetscCall(MatStashDestroy_Private(&mat->stash)); 57228b400f6SJacob Faibussowitsch PetscCheck(!mdn->vecinuse,PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 57328b400f6SJacob Faibussowitsch PetscCheck(!mdn->matinuse,PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 5749566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mdn->A)); 5759566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mdn->lvec)); 5769566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&mdn->Mvctx)); 5779566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mdn->cvec)); 5789566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mdn->cmat)); 57901b82886SBarry Smith 5809566063dSJacob Faibussowitsch PetscCall(PetscFree(mat->data)); 5819566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)mat,NULL)); 5828baccfbdSHong Zhang 5839566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",NULL)); 5849566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseSetLDA_C",NULL)); 5859566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",NULL)); 5869566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",NULL)); 5879566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",NULL)); 5889566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",NULL)); 5899566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayWrite_C",NULL)); 5909566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayWrite_C",NULL)); 5919566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",NULL)); 5929566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",NULL)); 5939566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseReplaceArray_C",NULL)); 5949566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpiaij_mpidense_C",NULL)); 5959566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_mpiaij_C",NULL)); 5968baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 5979566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",NULL)); 5988baccfbdSHong Zhang #endif 599d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 6009566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_scalapack_C",NULL)); 601d24d4204SJose E. Roman #endif 6029566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",NULL)); 6039566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaij_mpidense_C",NULL)); 6049566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaij_C",NULL)); 6056718818eSStefano Zampini #if defined (PETSC_HAVE_CUDA) 6069566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaijcusparse_mpidense_C",NULL)); 6079566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaijcusparse_C",NULL)); 6082e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_mpidensecuda_C",NULL)); 6092e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidensecuda_mpidense_C",NULL)); 6102e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaij_mpidensecuda_C",NULL)); 6112e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaijcusparse_mpidensecuda_C",NULL)); 6122e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidensecuda_mpiaij_C",NULL)); 6132e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidensecuda_mpiaijcusparse_C",NULL)); 6142e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseCUDAGetArray_C",NULL)); 6152e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseCUDAGetArrayRead_C",NULL)); 6162e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseCUDAGetArrayWrite_C",NULL)); 6172e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseCUDARestoreArray_C",NULL)); 6182e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseCUDARestoreArrayRead_C",NULL)); 6192e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseCUDARestoreArrayWrite_C",NULL)); 6202e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseCUDAPlaceArray_C",NULL)); 6212e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseCUDAResetArray_C",NULL)); 6222e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseCUDAReplaceArray_C",NULL)); 6236718818eSStefano Zampini #endif 6249566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",NULL)); 6259566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",NULL)); 6269566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",NULL)); 6279566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",NULL)); 6289566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",NULL)); 6299566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",NULL)); 6309566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",NULL)); 6319566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",NULL)); 6329566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetSubMatrix_C",NULL)); 6339566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreSubMatrix_C",NULL)); 634f8103e6bSStefano Zampini 635f8103e6bSStefano Zampini PetscCall(PetscObjectCompose((PetscObject)mat,"DiagonalBlock",NULL)); 6363a40ed3dSBarry Smith PetscFunctionReturn(0); 6378965ea79SLois Curfman McInnes } 63839ddd567SLois Curfman McInnes 63952c5f739Sprj- PETSC_INTERN PetscErrorCode MatView_SeqDense(Mat,PetscViewer); 64052c5f739Sprj- 6419804daf3SBarry Smith #include <petscdraw.h> 6426849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 6438965ea79SLois Curfman McInnes { 64439ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 645616b8fbbSStefano Zampini PetscMPIInt rank; 64619fd82e9SBarry Smith PetscViewerType vtype; 647ace3abfcSBarry Smith PetscBool iascii,isdraw; 648b0a32e0cSBarry Smith PetscViewer sviewer; 649f3ef73ceSBarry Smith PetscViewerFormat format; 6508965ea79SLois Curfman McInnes 6513a40ed3dSBarry Smith PetscFunctionBegin; 6529566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank)); 6539566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii)); 6549566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw)); 65532077d6dSBarry Smith if (iascii) { 6569566063dSJacob Faibussowitsch PetscCall(PetscViewerGetType(viewer,&vtype)); 6579566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer,&format)); 658456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 6594e220ebcSLois Curfman McInnes MatInfo info; 6609566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat,MAT_LOCAL,&info)); 6619566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 6629566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer," [%d] local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %" PetscInt_FMT " \n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory)); 6639566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 6649566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 6656f08ad05SPierre Jolivet if (mdn->Mvctx) PetscCall(PetscSFView(mdn->Mvctx,viewer)); 6663a40ed3dSBarry Smith PetscFunctionReturn(0); 667fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 6683a40ed3dSBarry Smith PetscFunctionReturn(0); 6698965ea79SLois Curfman McInnes } 670f1af5d2fSBarry Smith } else if (isdraw) { 671b0a32e0cSBarry Smith PetscDraw draw; 672ace3abfcSBarry Smith PetscBool isnull; 673f1af5d2fSBarry Smith 6749566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer,0,&draw)); 6759566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw,&isnull)); 676f1af5d2fSBarry Smith if (isnull) PetscFunctionReturn(0); 677f1af5d2fSBarry Smith } 67877ed5343SBarry Smith 6797da1fb6eSBarry Smith { 6808965ea79SLois Curfman McInnes /* assemble the entire matrix onto first processor. */ 6818965ea79SLois Curfman McInnes Mat A; 682d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,m,row,i,nz; 683ba8c8a56SBarry Smith PetscInt *cols; 684ba8c8a56SBarry Smith PetscScalar *vals; 6858965ea79SLois Curfman McInnes 6869566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat),&A)); 687dd400576SPatrick Sanan if (rank == 0) { 6889566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A,M,N,M,N)); 6893a40ed3dSBarry Smith } else { 6909566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A,0,0,M,N)); 6918965ea79SLois Curfman McInnes } 6927adad957SLisandro Dalcin /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */ 6939566063dSJacob Faibussowitsch PetscCall(MatSetType(A,MATMPIDENSE)); 6949566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(A,NULL)); 6959566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)A)); 6968965ea79SLois Curfman McInnes 69739ddd567SLois Curfman McInnes /* Copy the matrix ... This isn't the most efficient means, 69839ddd567SLois Curfman McInnes but it's quick for now */ 69951022da4SBarry Smith A->insertmode = INSERT_VALUES; 7002205254eSKarl Rupp 7012205254eSKarl Rupp row = mat->rmap->rstart; 7022205254eSKarl Rupp m = mdn->A->rmap->n; 7038965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 7049566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIDense(mat,row,&nz,&cols,&vals)); 7059566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIDense(A,1,&row,nz,cols,vals,INSERT_VALUES)); 7069566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIDense(mat,row,&nz,&cols,&vals)); 70739ddd567SLois Curfman McInnes row++; 7088965ea79SLois Curfman McInnes } 7098965ea79SLois Curfman McInnes 7109566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY)); 7119566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY)); 7129566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer)); 713dd400576SPatrick Sanan if (rank == 0) { 7149566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)((Mat_MPIDense*)(A->data))->A,((PetscObject)mat)->name)); 7159566063dSJacob Faibussowitsch PetscCall(MatView_SeqDense(((Mat_MPIDense*)(A->data))->A,sviewer)); 7168965ea79SLois Curfman McInnes } 7179566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer)); 7189566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 7199566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 7208965ea79SLois Curfman McInnes } 7213a40ed3dSBarry Smith PetscFunctionReturn(0); 7228965ea79SLois Curfman McInnes } 7238965ea79SLois Curfman McInnes 724dfbe8321SBarry Smith PetscErrorCode MatView_MPIDense(Mat mat,PetscViewer viewer) 7258965ea79SLois Curfman McInnes { 726ace3abfcSBarry Smith PetscBool iascii,isbinary,isdraw,issocket; 7278965ea79SLois Curfman McInnes 728433994e6SBarry Smith PetscFunctionBegin; 7299566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii)); 7309566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary)); 7319566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket)); 7329566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw)); 7330f5bd95cSBarry Smith 73432077d6dSBarry Smith if (iascii || issocket || isdraw) { 7359566063dSJacob Faibussowitsch PetscCall(MatView_MPIDense_ASCIIorDraworSocket(mat,viewer)); 7361baa6e33SBarry Smith } else if (isbinary) PetscCall(MatView_Dense_Binary(mat,viewer)); 7373a40ed3dSBarry Smith PetscFunctionReturn(0); 7388965ea79SLois Curfman McInnes } 7398965ea79SLois Curfman McInnes 740dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info) 7418965ea79SLois Curfman McInnes { 7423501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 7433501a2bdSLois Curfman McInnes Mat mdn = mat->A; 7443966268fSBarry Smith PetscLogDouble isend[5],irecv[5]; 7458965ea79SLois Curfman McInnes 7463a40ed3dSBarry Smith PetscFunctionBegin; 7474e220ebcSLois Curfman McInnes info->block_size = 1.0; 7482205254eSKarl Rupp 7499566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mdn,MAT_LOCAL,info)); 7502205254eSKarl Rupp 7514e220ebcSLois Curfman McInnes isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 7524e220ebcSLois Curfman McInnes isend[3] = info->memory; isend[4] = info->mallocs; 7538965ea79SLois Curfman McInnes if (flag == MAT_LOCAL) { 7544e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 7554e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 7564e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 7574e220ebcSLois Curfman McInnes info->memory = isend[3]; 7584e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 7598965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 7601c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_MAX,PetscObjectComm((PetscObject)A))); 7612205254eSKarl Rupp 7624e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7634e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7644e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7654e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7664e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7678965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 7681c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_SUM,PetscObjectComm((PetscObject)A))); 7692205254eSKarl Rupp 7704e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7714e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7724e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7734e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7744e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7758965ea79SLois Curfman McInnes } 7764e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 7774e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 7784e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 7793a40ed3dSBarry Smith PetscFunctionReturn(0); 7808965ea79SLois Curfman McInnes } 7818965ea79SLois Curfman McInnes 782ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIDense(Mat A,MatOption op,PetscBool flg) 7838965ea79SLois Curfman McInnes { 78439ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 7858965ea79SLois Curfman McInnes 7863a40ed3dSBarry Smith PetscFunctionBegin; 78712c028f9SKris Buschelman switch (op) { 788512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 78912c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 79012c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 79143674050SBarry Smith MatCheckPreallocated(A,1); 7929566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A,op,flg)); 79312c028f9SKris Buschelman break; 79412c028f9SKris Buschelman case MAT_ROW_ORIENTED: 79543674050SBarry Smith MatCheckPreallocated(A,1); 7964e0d8c25SBarry Smith a->roworiented = flg; 7979566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A,op,flg)); 79812c028f9SKris Buschelman break; 7998c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 80013fa8e87SLisandro Dalcin case MAT_KEEP_NONZERO_PATTERN: 80112c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 802071fcb05SBarry Smith case MAT_SORTED_FULL: 8039566063dSJacob Faibussowitsch PetscCall(PetscInfo(A,"Option %s ignored\n",MatOptions[op])); 80412c028f9SKris Buschelman break; 80512c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 8064e0d8c25SBarry Smith a->donotstash = flg; 80712c028f9SKris Buschelman break; 80877e54ba9SKris Buschelman case MAT_SYMMETRIC: 80977e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 8109a4540c5SBarry Smith case MAT_HERMITIAN: 8119a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 812b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 813b94d7dedSBarry Smith case MAT_SPD: 814600fe468SBarry Smith case MAT_IGNORE_LOWER_TRIANGULAR: 8155d7aebe8SStefano Zampini case MAT_IGNORE_ZERO_ENTRIES: 816b94d7dedSBarry Smith case MAT_SPD_ETERNAL: 817b94d7dedSBarry Smith /* if the diagonal matrix is square it inherits some of the properties above */ 8189566063dSJacob Faibussowitsch PetscCall(PetscInfo(A,"Option %s ignored\n",MatOptions[op])); 81977e54ba9SKris Buschelman break; 82012c028f9SKris Buschelman default: 82198921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %s",MatOptions[op]); 8223a40ed3dSBarry Smith } 8233a40ed3dSBarry Smith PetscFunctionReturn(0); 8248965ea79SLois Curfman McInnes } 8258965ea79SLois Curfman McInnes 826dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIDense(Mat A,Vec ll,Vec rr) 8275b2fa520SLois Curfman McInnes { 8285b2fa520SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 829637a0070SStefano Zampini const PetscScalar *l; 830637a0070SStefano Zampini PetscScalar x,*v,*vv,*r; 831637a0070SStefano Zampini PetscInt i,j,s2a,s3a,s2,s3,m=mdn->A->rmap->n,n=mdn->A->cmap->n,lda; 8325b2fa520SLois Curfman McInnes 8335b2fa520SLois Curfman McInnes PetscFunctionBegin; 8349566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(mdn->A,&vv)); 8359566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(mdn->A,&lda)); 8369566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A,&s2,&s3)); 8375b2fa520SLois Curfman McInnes if (ll) { 8389566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll,&s2a)); 83908401ef6SPierre Jolivet PetscCheck(s2a == s2,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vector non-conforming local size, %" PetscInt_FMT " != %" PetscInt_FMT, s2a, s2); 8409566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(ll,&l)); 8415b2fa520SLois Curfman McInnes for (i=0; i<m; i++) { 8425b2fa520SLois Curfman McInnes x = l[i]; 843637a0070SStefano Zampini v = vv + i; 844637a0070SStefano Zampini for (j=0; j<n; j++) { (*v) *= x; v+= lda;} 8455b2fa520SLois Curfman McInnes } 8469566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(ll,&l)); 8479566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(1.0*n*m)); 8485b2fa520SLois Curfman McInnes } 8495b2fa520SLois Curfman McInnes if (rr) { 850637a0070SStefano Zampini const PetscScalar *ar; 851637a0070SStefano Zampini 8529566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr,&s3a)); 85308401ef6SPierre Jolivet PetscCheck(s3a == s3,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vec non-conforming local size, %" PetscInt_FMT " != %" PetscInt_FMT ".", s3a, s3); 8549566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(rr,&ar)); 8556f08ad05SPierre Jolivet if (!mdn->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); 8569566063dSJacob Faibussowitsch PetscCall(VecGetArray(mdn->lvec,&r)); 8579566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(mdn->Mvctx,MPIU_SCALAR,ar,r,MPI_REPLACE)); 8589566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ar,r,MPI_REPLACE)); 8599566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(rr,&ar)); 8605b2fa520SLois Curfman McInnes for (i=0; i<n; i++) { 8615b2fa520SLois Curfman McInnes x = r[i]; 862637a0070SStefano Zampini v = vv + i*lda; 8632205254eSKarl Rupp for (j=0; j<m; j++) (*v++) *= x; 8645b2fa520SLois Curfman McInnes } 8659566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mdn->lvec,&r)); 8669566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(1.0*n*m)); 8675b2fa520SLois Curfman McInnes } 8689566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(mdn->A,&vv)); 8695b2fa520SLois Curfman McInnes PetscFunctionReturn(0); 8705b2fa520SLois Curfman McInnes } 8715b2fa520SLois Curfman McInnes 872dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIDense(Mat A,NormType type,PetscReal *nrm) 873096963f5SLois Curfman McInnes { 8743501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 87513f74950SBarry Smith PetscInt i,j; 876616b8fbbSStefano Zampini PetscMPIInt size; 877329f5518SBarry Smith PetscReal sum = 0.0; 878637a0070SStefano Zampini const PetscScalar *av,*v; 8793501a2bdSLois Curfman McInnes 8803a40ed3dSBarry Smith PetscFunctionBegin; 8819566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(mdn->A,&av)); 882637a0070SStefano Zampini v = av; 8839566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A),&size)); 884616b8fbbSStefano Zampini if (size == 1) { 8859566063dSJacob Faibussowitsch PetscCall(MatNorm(mdn->A,type,nrm)); 8863501a2bdSLois Curfman McInnes } else { 8873501a2bdSLois Curfman McInnes if (type == NORM_FROBENIUS) { 888d0f46423SBarry Smith for (i=0; i<mdn->A->cmap->n*mdn->A->rmap->n; i++) { 889329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 8903501a2bdSLois Curfman McInnes } 8911c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A))); 8928f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 8939566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0*mdn->A->cmap->n*mdn->A->rmap->n)); 8943a40ed3dSBarry Smith } else if (type == NORM_1) { 895329f5518SBarry Smith PetscReal *tmp,*tmp2; 8969566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(A->cmap->N,&tmp,A->cmap->N,&tmp2)); 897064f8208SBarry Smith *nrm = 0.0; 898637a0070SStefano Zampini v = av; 899d0f46423SBarry Smith for (j=0; j<mdn->A->cmap->n; j++) { 900d0f46423SBarry Smith for (i=0; i<mdn->A->rmap->n; i++) { 90167e560aaSBarry Smith tmp[j] += PetscAbsScalar(*v); v++; 9023501a2bdSLois Curfman McInnes } 9033501a2bdSLois Curfman McInnes } 9041c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(tmp,tmp2,A->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A))); 905d0f46423SBarry Smith for (j=0; j<A->cmap->N; j++) { 906064f8208SBarry Smith if (tmp2[j] > *nrm) *nrm = tmp2[j]; 9073501a2bdSLois Curfman McInnes } 9089566063dSJacob Faibussowitsch PetscCall(PetscFree2(tmp,tmp2)); 9099566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(A->cmap->n*A->rmap->n)); 9103a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 911329f5518SBarry Smith PetscReal ntemp; 9129566063dSJacob Faibussowitsch PetscCall(MatNorm(mdn->A,type,&ntemp)); 9131c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&ntemp,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A))); 914ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"No support for two norm"); 9153501a2bdSLois Curfman McInnes } 9169566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(mdn->A,&av)); 9173a40ed3dSBarry Smith PetscFunctionReturn(0); 9183501a2bdSLois Curfman McInnes } 9193501a2bdSLois Curfman McInnes 920fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIDense(Mat A,MatReuse reuse,Mat *matout) 9213501a2bdSLois Curfman McInnes { 9223501a2bdSLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 9233501a2bdSLois Curfman McInnes Mat B; 924d0f46423SBarry Smith PetscInt M = A->rmap->N,N = A->cmap->N,m,n,*rwork,rstart = A->rmap->rstart; 925637a0070SStefano Zampini PetscInt j,i,lda; 92687828ca2SBarry Smith PetscScalar *v; 9273501a2bdSLois Curfman McInnes 9283a40ed3dSBarry Smith PetscFunctionBegin; 929*7fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A,*matout)); 930cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 9319566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&B)); 9329566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B,A->cmap->n,A->rmap->n,N,M)); 9339566063dSJacob Faibussowitsch PetscCall(MatSetType(B,((PetscObject)A)->type_name)); 9349566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(B,NULL)); 935637a0070SStefano Zampini } else B = *matout; 9363501a2bdSLois Curfman McInnes 937637a0070SStefano Zampini m = a->A->rmap->n; n = a->A->cmap->n; 9389566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A,(const PetscScalar**)&v)); 9399566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 9409566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m,&rwork)); 9413501a2bdSLois Curfman McInnes for (i=0; i<m; i++) rwork[i] = rstart + i; 9421acff37aSSatish Balay for (j=0; j<n; j++) { 9439566063dSJacob Faibussowitsch PetscCall(MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES)); 944637a0070SStefano Zampini v += lda; 9453501a2bdSLois Curfman McInnes } 9469566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A,(const PetscScalar**)&v)); 9479566063dSJacob Faibussowitsch PetscCall(PetscFree(rwork)); 9489566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY)); 9499566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY)); 950cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) { 9513501a2bdSLois Curfman McInnes *matout = B; 9523501a2bdSLois Curfman McInnes } else { 9539566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(A,&B)); 9543501a2bdSLois Curfman McInnes } 9553a40ed3dSBarry Smith PetscFunctionReturn(0); 956096963f5SLois Curfman McInnes } 957096963f5SLois Curfman McInnes 9586849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat*); 95952c5f739Sprj- PETSC_INTERN PetscErrorCode MatScale_MPIDense(Mat,PetscScalar); 9608965ea79SLois Curfman McInnes 9614994cf47SJed Brown PetscErrorCode MatSetUp_MPIDense(Mat A) 962273d9f13SBarry Smith { 963273d9f13SBarry Smith PetscFunctionBegin; 9649566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->rmap)); 9659566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->cmap)); 96618992e5dSStefano Zampini if (!A->preallocated) { 9679566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(A,NULL)); 96818992e5dSStefano Zampini } 969273d9f13SBarry Smith PetscFunctionReturn(0); 970273d9f13SBarry Smith } 971273d9f13SBarry Smith 972488007eeSBarry Smith PetscErrorCode MatAXPY_MPIDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str) 973488007eeSBarry Smith { 974488007eeSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)Y->data, *B = (Mat_MPIDense*)X->data; 975488007eeSBarry Smith 976488007eeSBarry Smith PetscFunctionBegin; 9779566063dSJacob Faibussowitsch PetscCall(MatAXPY(A->A,alpha,B->A,str)); 978488007eeSBarry Smith PetscFunctionReturn(0); 979488007eeSBarry Smith } 980488007eeSBarry Smith 9817087cfbeSBarry Smith PetscErrorCode MatConjugate_MPIDense(Mat mat) 982ba337c44SJed Brown { 983ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)mat->data; 984ba337c44SJed Brown 985ba337c44SJed Brown PetscFunctionBegin; 9869566063dSJacob Faibussowitsch PetscCall(MatConjugate(a->A)); 987ba337c44SJed Brown PetscFunctionReturn(0); 988ba337c44SJed Brown } 989ba337c44SJed Brown 990ba337c44SJed Brown PetscErrorCode MatRealPart_MPIDense(Mat A) 991ba337c44SJed Brown { 992ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 993ba337c44SJed Brown 994ba337c44SJed Brown PetscFunctionBegin; 9959566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 996ba337c44SJed Brown PetscFunctionReturn(0); 997ba337c44SJed Brown } 998ba337c44SJed Brown 999ba337c44SJed Brown PetscErrorCode MatImaginaryPart_MPIDense(Mat A) 1000ba337c44SJed Brown { 1001ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1002ba337c44SJed Brown 1003ba337c44SJed Brown PetscFunctionBegin; 10049566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 1005ba337c44SJed Brown PetscFunctionReturn(0); 1006ba337c44SJed Brown } 1007ba337c44SJed Brown 100849a6ff4bSBarry Smith static PetscErrorCode MatGetColumnVector_MPIDense(Mat A,Vec v,PetscInt col) 100949a6ff4bSBarry Smith { 1010637a0070SStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*) A->data; 101149a6ff4bSBarry Smith 101249a6ff4bSBarry Smith PetscFunctionBegin; 101328b400f6SJacob Faibussowitsch PetscCheck(a->A,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Missing local matrix"); 101428b400f6SJacob Faibussowitsch PetscCheck(a->A->ops->getcolumnvector,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Missing get column operation"); 10159566063dSJacob Faibussowitsch PetscCall((*a->A->ops->getcolumnvector)(a->A,v,col)); 101649a6ff4bSBarry Smith PetscFunctionReturn(0); 101749a6ff4bSBarry Smith } 101849a6ff4bSBarry Smith 1019857cbf51SRichard Tran Mills PETSC_INTERN PetscErrorCode MatGetColumnReductions_SeqDense(Mat,PetscInt,PetscReal*); 102052c5f739Sprj- 1021857cbf51SRichard Tran Mills PetscErrorCode MatGetColumnReductions_MPIDense(Mat A,PetscInt type,PetscReal *reductions) 10220716a85fSBarry Smith { 1023a873a8cdSSam Reynolds PetscInt i,m,n; 10240716a85fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*) A->data; 10250716a85fSBarry Smith PetscReal *work; 10260716a85fSBarry Smith 10270716a85fSBarry Smith PetscFunctionBegin; 10289566063dSJacob Faibussowitsch PetscCall(MatGetSize(A,&m,&n)); 10299566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n,&work)); 1030857cbf51SRichard Tran Mills if (type == REDUCTION_MEAN_REALPART) { 10319566063dSJacob Faibussowitsch PetscCall(MatGetColumnReductions_SeqDense(a->A,(PetscInt)REDUCTION_SUM_REALPART,work)); 1032857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_IMAGINARYPART) { 10339566063dSJacob Faibussowitsch PetscCall(MatGetColumnReductions_SeqDense(a->A,(PetscInt)REDUCTION_SUM_IMAGINARYPART,work)); 1034a873a8cdSSam Reynolds } else { 10359566063dSJacob Faibussowitsch PetscCall(MatGetColumnReductions_SeqDense(a->A,type,work)); 1036a873a8cdSSam Reynolds } 1037857cbf51SRichard Tran Mills if (type == NORM_2) { 10380716a85fSBarry Smith for (i=0; i<n; i++) work[i] *= work[i]; 10390716a85fSBarry Smith } 1040857cbf51SRichard Tran Mills if (type == NORM_INFINITY) { 10411c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work,reductions,n,MPIU_REAL,MPIU_MAX,A->hdr.comm)); 10420716a85fSBarry Smith } else { 10431c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work,reductions,n,MPIU_REAL,MPIU_SUM,A->hdr.comm)); 10440716a85fSBarry Smith } 10459566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 1046857cbf51SRichard Tran Mills if (type == NORM_2) { 1047a873a8cdSSam Reynolds for (i=0; i<n; i++) reductions[i] = PetscSqrtReal(reductions[i]); 1048857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 1049a873a8cdSSam Reynolds for (i=0; i<n; i++) reductions[i] /= m; 10500716a85fSBarry Smith } 10510716a85fSBarry Smith PetscFunctionReturn(0); 10520716a85fSBarry Smith } 10530716a85fSBarry Smith 1054637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1055126e4e93SJose E. Roman PetscErrorCode MatShift_MPIDenseCUDA(Mat A,PetscScalar alpha) 1056126e4e93SJose E. Roman { 1057126e4e93SJose E. Roman PetscScalar *da; 1058126e4e93SJose E. Roman PetscInt lda; 1059126e4e93SJose E. Roman 1060126e4e93SJose E. Roman PetscFunctionBegin; 1061126e4e93SJose E. Roman PetscCall(MatDenseCUDAGetArray(A,&da)); 1062126e4e93SJose E. Roman PetscCall(MatDenseGetLDA(A,&lda)); 1063126e4e93SJose E. Roman PetscCall(PetscInfo(A,"Performing Shift on backend\n")); 1064126e4e93SJose E. Roman PetscCall(MatShift_DenseCUDA_Private(da,alpha,lda,A->rmap->rstart,A->rmap->rend,A->cmap->N)); 1065126e4e93SJose E. Roman PetscCall(MatDenseCUDARestoreArray(A,&da)); 1066126e4e93SJose E. Roman PetscFunctionReturn(0); 1067126e4e93SJose E. Roman } 1068126e4e93SJose E. Roman 10696947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVec_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10706947451fSStefano Zampini { 10716947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10726947451fSStefano Zampini PetscInt lda; 10736947451fSStefano Zampini 10746947451fSStefano Zampini PetscFunctionBegin; 107528b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 107628b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 10776947451fSStefano Zampini if (!a->cvec) { 10789566063dSJacob Faibussowitsch PetscCall(VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 10799566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec)); 10806947451fSStefano Zampini } 10816947451fSStefano Zampini a->vecinuse = col + 1; 10829566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 10839566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArray(a->A,(PetscScalar**)&a->ptrinuse)); 10849566063dSJacob Faibussowitsch PetscCall(VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 10856947451fSStefano Zampini *v = a->cvec; 10866947451fSStefano Zampini PetscFunctionReturn(0); 10876947451fSStefano Zampini } 10886947451fSStefano Zampini 10896947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVec_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10906947451fSStefano Zampini { 10916947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10926947451fSStefano Zampini 10936947451fSStefano Zampini PetscFunctionBegin; 109428b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 109528b400f6SJacob Faibussowitsch PetscCheck(a->cvec,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector"); 10966947451fSStefano Zampini a->vecinuse = 0; 10979566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArray(a->A,(PetscScalar**)&a->ptrinuse)); 10989566063dSJacob Faibussowitsch PetscCall(VecCUDAResetArray(a->cvec)); 10996947451fSStefano Zampini *v = NULL; 11006947451fSStefano Zampini PetscFunctionReturn(0); 11016947451fSStefano Zampini } 11026947451fSStefano Zampini 11036947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecRead_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 11046947451fSStefano Zampini { 11056947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 11066947451fSStefano Zampini PetscInt lda; 11076947451fSStefano Zampini 11086947451fSStefano Zampini PetscFunctionBegin; 110928b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 111028b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 11116947451fSStefano Zampini if (!a->cvec) { 11129566063dSJacob Faibussowitsch PetscCall(VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 11139566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec)); 11146947451fSStefano Zampini } 11156947451fSStefano Zampini a->vecinuse = col + 1; 11169566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 11179566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArrayRead(a->A,&a->ptrinuse)); 11189566063dSJacob Faibussowitsch PetscCall(VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 11199566063dSJacob Faibussowitsch PetscCall(VecLockReadPush(a->cvec)); 11206947451fSStefano Zampini *v = a->cvec; 11216947451fSStefano Zampini PetscFunctionReturn(0); 11226947451fSStefano Zampini } 11236947451fSStefano Zampini 11246947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecRead_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 11256947451fSStefano Zampini { 11266947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 11276947451fSStefano Zampini 11286947451fSStefano Zampini PetscFunctionBegin; 112928b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 113028b400f6SJacob Faibussowitsch PetscCheck(a->cvec,PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 11316947451fSStefano Zampini a->vecinuse = 0; 11329566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArrayRead(a->A,&a->ptrinuse)); 11339566063dSJacob Faibussowitsch PetscCall(VecLockReadPop(a->cvec)); 11349566063dSJacob Faibussowitsch PetscCall(VecCUDAResetArray(a->cvec)); 11356947451fSStefano Zampini *v = NULL; 11366947451fSStefano Zampini PetscFunctionReturn(0); 11376947451fSStefano Zampini } 11386947451fSStefano Zampini 11396947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecWrite_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 11406947451fSStefano Zampini { 11416947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 11426947451fSStefano Zampini PetscInt lda; 11436947451fSStefano Zampini 11446947451fSStefano Zampini PetscFunctionBegin; 114528b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 114628b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 11476947451fSStefano Zampini if (!a->cvec) { 11489566063dSJacob Faibussowitsch PetscCall(VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 11499566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec)); 11506947451fSStefano Zampini } 11516947451fSStefano Zampini a->vecinuse = col + 1; 11529566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 11539566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArrayWrite(a->A,(PetscScalar**)&a->ptrinuse)); 11549566063dSJacob Faibussowitsch PetscCall(VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 11556947451fSStefano Zampini *v = a->cvec; 11566947451fSStefano Zampini PetscFunctionReturn(0); 11576947451fSStefano Zampini } 11586947451fSStefano Zampini 11596947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 11606947451fSStefano Zampini { 11616947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 11626947451fSStefano Zampini 11636947451fSStefano Zampini PetscFunctionBegin; 116428b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 116528b400f6SJacob Faibussowitsch PetscCheck(a->cvec,PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 11666947451fSStefano Zampini a->vecinuse = 0; 11679566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArrayWrite(a->A,(PetscScalar**)&a->ptrinuse)); 11689566063dSJacob Faibussowitsch PetscCall(VecCUDAResetArray(a->cvec)); 11696947451fSStefano Zampini *v = NULL; 11706947451fSStefano Zampini PetscFunctionReturn(0); 11716947451fSStefano Zampini } 11726947451fSStefano Zampini 1173637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAPlaceArray_MPIDenseCUDA(Mat A, const PetscScalar *a) 1174637a0070SStefano Zampini { 1175637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1176637a0070SStefano Zampini 1177637a0070SStefano Zampini PetscFunctionBegin; 117828b400f6SJacob Faibussowitsch PetscCheck(!l->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 117928b400f6SJacob Faibussowitsch PetscCheck(!l->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 11809566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAPlaceArray(l->A,a)); 1181637a0070SStefano Zampini PetscFunctionReturn(0); 1182637a0070SStefano Zampini } 1183637a0070SStefano Zampini 1184637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAResetArray_MPIDenseCUDA(Mat A) 1185637a0070SStefano Zampini { 1186637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1187637a0070SStefano Zampini 1188637a0070SStefano Zampini PetscFunctionBegin; 118928b400f6SJacob Faibussowitsch PetscCheck(!l->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 119028b400f6SJacob Faibussowitsch PetscCheck(!l->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 11919566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAResetArray(l->A)); 1192637a0070SStefano Zampini PetscFunctionReturn(0); 1193637a0070SStefano Zampini } 1194637a0070SStefano Zampini 1195d5ea218eSStefano Zampini static PetscErrorCode MatDenseCUDAReplaceArray_MPIDenseCUDA(Mat A, const PetscScalar *a) 1196d5ea218eSStefano Zampini { 1197d5ea218eSStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1198d5ea218eSStefano Zampini 1199d5ea218eSStefano Zampini PetscFunctionBegin; 120028b400f6SJacob Faibussowitsch PetscCheck(!l->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 120128b400f6SJacob Faibussowitsch PetscCheck(!l->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 12029566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAReplaceArray(l->A,a)); 1203d5ea218eSStefano Zampini PetscFunctionReturn(0); 1204d5ea218eSStefano Zampini } 1205d5ea218eSStefano Zampini 1206637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArrayWrite_MPIDenseCUDA(Mat A, PetscScalar **a) 1207637a0070SStefano Zampini { 1208637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1209637a0070SStefano Zampini 1210637a0070SStefano Zampini PetscFunctionBegin; 12119566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArrayWrite(l->A,a)); 1212637a0070SStefano Zampini PetscFunctionReturn(0); 1213637a0070SStefano Zampini } 1214637a0070SStefano Zampini 1215637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArrayWrite_MPIDenseCUDA(Mat A, PetscScalar **a) 1216637a0070SStefano Zampini { 1217637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1218637a0070SStefano Zampini 1219637a0070SStefano Zampini PetscFunctionBegin; 12209566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArrayWrite(l->A,a)); 1221637a0070SStefano Zampini PetscFunctionReturn(0); 1222637a0070SStefano Zampini } 1223637a0070SStefano Zampini 1224637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArrayRead_MPIDenseCUDA(Mat A, const PetscScalar **a) 1225637a0070SStefano Zampini { 1226637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1227637a0070SStefano Zampini 1228637a0070SStefano Zampini PetscFunctionBegin; 12299566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArrayRead(l->A,a)); 1230637a0070SStefano Zampini PetscFunctionReturn(0); 1231637a0070SStefano Zampini } 1232637a0070SStefano Zampini 1233637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArrayRead_MPIDenseCUDA(Mat A, const PetscScalar **a) 1234637a0070SStefano Zampini { 1235637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1236637a0070SStefano Zampini 1237637a0070SStefano Zampini PetscFunctionBegin; 12389566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArrayRead(l->A,a)); 1239637a0070SStefano Zampini PetscFunctionReturn(0); 1240637a0070SStefano Zampini } 1241637a0070SStefano Zampini 1242637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArray_MPIDenseCUDA(Mat A, PetscScalar **a) 1243637a0070SStefano Zampini { 1244637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1245637a0070SStefano Zampini 1246637a0070SStefano Zampini PetscFunctionBegin; 12479566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArray(l->A,a)); 1248637a0070SStefano Zampini PetscFunctionReturn(0); 1249637a0070SStefano Zampini } 1250637a0070SStefano Zampini 1251637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArray_MPIDenseCUDA(Mat A, PetscScalar **a) 1252637a0070SStefano Zampini { 1253637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1254637a0070SStefano Zampini 1255637a0070SStefano Zampini PetscFunctionBegin; 12569566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArray(l->A,a)); 1257637a0070SStefano Zampini PetscFunctionReturn(0); 1258637a0070SStefano Zampini } 1259637a0070SStefano Zampini 12606947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecWrite_MPIDense(Mat,PetscInt,Vec*); 12616947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecRead_MPIDense(Mat,PetscInt,Vec*); 12626947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVec_MPIDense(Mat,PetscInt,Vec*); 12636947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDense(Mat,PetscInt,Vec*); 12646947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecRead_MPIDense(Mat,PetscInt,Vec*); 12656947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVec_MPIDense(Mat,PetscInt,Vec*); 12665ea7661aSPierre Jolivet static PetscErrorCode MatDenseRestoreSubMatrix_MPIDense(Mat,Mat*); 12676947451fSStefano Zampini 1268637a0070SStefano Zampini static PetscErrorCode MatBindToCPU_MPIDenseCUDA(Mat mat,PetscBool bind) 1269637a0070SStefano Zampini { 1270637a0070SStefano Zampini Mat_MPIDense *d = (Mat_MPIDense*)mat->data; 1271637a0070SStefano Zampini 1272637a0070SStefano Zampini PetscFunctionBegin; 127328b400f6SJacob Faibussowitsch PetscCheck(!d->vecinuse,PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 127428b400f6SJacob Faibussowitsch PetscCheck(!d->matinuse,PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 12751baa6e33SBarry Smith if (d->A) PetscCall(MatBindToCPU(d->A,bind)); 1276637a0070SStefano Zampini mat->boundtocpu = bind; 12776947451fSStefano Zampini if (!bind) { 12786947451fSStefano Zampini PetscBool iscuda; 12796947451fSStefano Zampini 12809566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)d->cvec,VECMPICUDA,&iscuda)); 12816947451fSStefano Zampini if (!iscuda) { 12829566063dSJacob Faibussowitsch PetscCall(VecDestroy(&d->cvec)); 1283616b8fbbSStefano Zampini } 12849566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)d->cmat,MATMPIDENSECUDA,&iscuda)); 1285616b8fbbSStefano Zampini if (!iscuda) { 12869566063dSJacob Faibussowitsch PetscCall(MatDestroy(&d->cmat)); 12876947451fSStefano Zampini } 12889566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDenseCUDA)); 12899566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDenseCUDA)); 12909566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDenseCUDA)); 12919566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDenseCUDA)); 12929566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDenseCUDA)); 12939566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDenseCUDA)); 1294126e4e93SJose E. Roman mat->ops->shift = MatShift_MPIDenseCUDA; 12956947451fSStefano Zampini } else { 12969566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDense)); 12979566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDense)); 12989566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDense)); 12999566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDense)); 13009566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDense)); 13019566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDense)); 1302126e4e93SJose E. Roman mat->ops->shift = MatShift_MPIDense; 1303616b8fbbSStefano Zampini } 13041baa6e33SBarry Smith if (d->cmat) PetscCall(MatBindToCPU(d->cmat,bind)); 1305637a0070SStefano Zampini PetscFunctionReturn(0); 1306637a0070SStefano Zampini } 1307637a0070SStefano Zampini 1308637a0070SStefano Zampini PetscErrorCode MatMPIDenseCUDASetPreallocation(Mat A, PetscScalar *d_data) 1309637a0070SStefano Zampini { 1310637a0070SStefano Zampini Mat_MPIDense *d = (Mat_MPIDense*)A->data; 1311637a0070SStefano Zampini PetscBool iscuda; 1312637a0070SStefano Zampini 1313637a0070SStefano Zampini PetscFunctionBegin; 1314d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 13159566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A,MATMPIDENSECUDA,&iscuda)); 1316637a0070SStefano Zampini if (!iscuda) PetscFunctionReturn(0); 13179566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->rmap)); 13189566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->cmap)); 1319637a0070SStefano Zampini if (!d->A) { 13209566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF,&d->A)); 13219566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)d->A)); 13229566063dSJacob Faibussowitsch PetscCall(MatSetSizes(d->A,A->rmap->n,A->cmap->N,A->rmap->n,A->cmap->N)); 1323637a0070SStefano Zampini } 13249566063dSJacob Faibussowitsch PetscCall(MatSetType(d->A,MATSEQDENSECUDA)); 13259566063dSJacob Faibussowitsch PetscCall(MatSeqDenseCUDASetPreallocation(d->A,d_data)); 1326637a0070SStefano Zampini A->preallocated = PETSC_TRUE; 13276f08ad05SPierre Jolivet A->assembled = PETSC_TRUE; 1328637a0070SStefano Zampini PetscFunctionReturn(0); 1329637a0070SStefano Zampini } 1330637a0070SStefano Zampini #endif 1331637a0070SStefano Zampini 133273a71a0fSBarry Smith static PetscErrorCode MatSetRandom_MPIDense(Mat x,PetscRandom rctx) 133373a71a0fSBarry Smith { 133473a71a0fSBarry Smith Mat_MPIDense *d = (Mat_MPIDense*)x->data; 133573a71a0fSBarry Smith 133673a71a0fSBarry Smith PetscFunctionBegin; 13379566063dSJacob Faibussowitsch PetscCall(MatSetRandom(d->A,rctx)); 133873a71a0fSBarry Smith PetscFunctionReturn(0); 133973a71a0fSBarry Smith } 134073a71a0fSBarry Smith 13413b49f96aSBarry Smith static PetscErrorCode MatMissingDiagonal_MPIDense(Mat A,PetscBool *missing,PetscInt *d) 13423b49f96aSBarry Smith { 13433b49f96aSBarry Smith PetscFunctionBegin; 13443b49f96aSBarry Smith *missing = PETSC_FALSE; 13453b49f96aSBarry Smith PetscFunctionReturn(0); 13463b49f96aSBarry Smith } 13473b49f96aSBarry Smith 13484222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat,Mat,PetscReal,Mat); 1349cc48ffa7SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat,Mat,Mat); 13506718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat,Mat,PetscReal,Mat); 1351a1f9a5e6SStefano Zampini static PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat,Mat,Mat); 13526718818eSStefano Zampini static PetscErrorCode MatEqual_MPIDense(Mat,Mat,PetscBool*); 13536718818eSStefano Zampini static PetscErrorCode MatLoad_MPIDense(Mat,PetscViewer); 1354cc48ffa7SToby Isaac 13558965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/ 135609dc0095SBarry Smith static struct _MatOps MatOps_Values = { MatSetValues_MPIDense, 135709dc0095SBarry Smith MatGetRow_MPIDense, 135809dc0095SBarry Smith MatRestoreRow_MPIDense, 135909dc0095SBarry Smith MatMult_MPIDense, 136097304618SKris Buschelman /* 4*/ MatMultAdd_MPIDense, 13617c922b88SBarry Smith MatMultTranspose_MPIDense, 13627c922b88SBarry Smith MatMultTransposeAdd_MPIDense, 1363f4259b30SLisandro Dalcin NULL, 1364f4259b30SLisandro Dalcin NULL, 1365f4259b30SLisandro Dalcin NULL, 1366f4259b30SLisandro Dalcin /* 10*/ NULL, 1367f4259b30SLisandro Dalcin NULL, 1368f4259b30SLisandro Dalcin NULL, 1369f4259b30SLisandro Dalcin NULL, 137009dc0095SBarry Smith MatTranspose_MPIDense, 137197304618SKris Buschelman /* 15*/ MatGetInfo_MPIDense, 13726e4ee0c6SHong Zhang MatEqual_MPIDense, 137309dc0095SBarry Smith MatGetDiagonal_MPIDense, 13745b2fa520SLois Curfman McInnes MatDiagonalScale_MPIDense, 137509dc0095SBarry Smith MatNorm_MPIDense, 137697304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPIDense, 137709dc0095SBarry Smith MatAssemblyEnd_MPIDense, 137809dc0095SBarry Smith MatSetOption_MPIDense, 137909dc0095SBarry Smith MatZeroEntries_MPIDense, 1380d519adbfSMatthew Knepley /* 24*/ MatZeroRows_MPIDense, 1381f4259b30SLisandro Dalcin NULL, 1382f4259b30SLisandro Dalcin NULL, 1383f4259b30SLisandro Dalcin NULL, 1384f4259b30SLisandro Dalcin NULL, 13854994cf47SJed Brown /* 29*/ MatSetUp_MPIDense, 1386f4259b30SLisandro Dalcin NULL, 1387f4259b30SLisandro Dalcin NULL, 1388c56a70eeSBarry Smith MatGetDiagonalBlock_MPIDense, 1389f4259b30SLisandro Dalcin NULL, 1390d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPIDense, 1391f4259b30SLisandro Dalcin NULL, 1392f4259b30SLisandro Dalcin NULL, 1393f4259b30SLisandro Dalcin NULL, 1394f4259b30SLisandro Dalcin NULL, 1395d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPIDense, 13967dae84e0SHong Zhang MatCreateSubMatrices_MPIDense, 1397f4259b30SLisandro Dalcin NULL, 139809dc0095SBarry Smith MatGetValues_MPIDense, 1399a76f77c3SStefano Zampini MatCopy_MPIDense, 1400f4259b30SLisandro Dalcin /* 44*/ NULL, 140109dc0095SBarry Smith MatScale_MPIDense, 14022f605a99SJose E. Roman MatShift_MPIDense, 1403f4259b30SLisandro Dalcin NULL, 1404f4259b30SLisandro Dalcin NULL, 140573a71a0fSBarry Smith /* 49*/ MatSetRandom_MPIDense, 1406f4259b30SLisandro Dalcin NULL, 1407f4259b30SLisandro Dalcin NULL, 1408f4259b30SLisandro Dalcin NULL, 1409f4259b30SLisandro Dalcin NULL, 1410f4259b30SLisandro Dalcin /* 54*/ NULL, 1411f4259b30SLisandro Dalcin NULL, 1412f4259b30SLisandro Dalcin NULL, 1413f4259b30SLisandro Dalcin NULL, 1414f4259b30SLisandro Dalcin NULL, 14157dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPIDense, 1416b9b97703SBarry Smith MatDestroy_MPIDense, 1417b9b97703SBarry Smith MatView_MPIDense, 1418f4259b30SLisandro Dalcin NULL, 1419f4259b30SLisandro Dalcin NULL, 1420f4259b30SLisandro Dalcin /* 64*/ NULL, 1421f4259b30SLisandro Dalcin NULL, 1422f4259b30SLisandro Dalcin NULL, 1423f4259b30SLisandro Dalcin NULL, 1424f4259b30SLisandro Dalcin NULL, 1425f4259b30SLisandro Dalcin /* 69*/ NULL, 1426f4259b30SLisandro Dalcin NULL, 1427f4259b30SLisandro Dalcin NULL, 1428f4259b30SLisandro Dalcin NULL, 1429f4259b30SLisandro Dalcin NULL, 1430f4259b30SLisandro Dalcin /* 74*/ NULL, 1431f4259b30SLisandro Dalcin NULL, 1432f4259b30SLisandro Dalcin NULL, 1433f4259b30SLisandro Dalcin NULL, 1434f4259b30SLisandro Dalcin NULL, 1435f4259b30SLisandro Dalcin /* 79*/ NULL, 1436f4259b30SLisandro Dalcin NULL, 1437f4259b30SLisandro Dalcin NULL, 1438f4259b30SLisandro Dalcin NULL, 14395bba2384SShri Abhyankar /* 83*/ MatLoad_MPIDense, 1440f4259b30SLisandro Dalcin NULL, 1441f4259b30SLisandro Dalcin NULL, 1442f4259b30SLisandro Dalcin NULL, 1443f4259b30SLisandro Dalcin NULL, 1444f4259b30SLisandro Dalcin NULL, 1445f4259b30SLisandro Dalcin /* 89*/ NULL, 1446f4259b30SLisandro Dalcin NULL, 1447f4259b30SLisandro Dalcin NULL, 1448f4259b30SLisandro Dalcin NULL, 1449f4259b30SLisandro Dalcin NULL, 1450f4259b30SLisandro Dalcin /* 94*/ NULL, 1451f4259b30SLisandro Dalcin NULL, 14526718818eSStefano Zampini MatMatTransposeMultSymbolic_MPIDense_MPIDense, 1453cc48ffa7SToby Isaac MatMatTransposeMultNumeric_MPIDense_MPIDense, 1454f4259b30SLisandro Dalcin NULL, 14554222ddf1SHong Zhang /* 99*/ MatProductSetFromOptions_MPIDense, 1456f4259b30SLisandro Dalcin NULL, 1457f4259b30SLisandro Dalcin NULL, 1458ba337c44SJed Brown MatConjugate_MPIDense, 1459f4259b30SLisandro Dalcin NULL, 1460f4259b30SLisandro Dalcin /*104*/ NULL, 1461ba337c44SJed Brown MatRealPart_MPIDense, 1462ba337c44SJed Brown MatImaginaryPart_MPIDense, 1463f4259b30SLisandro Dalcin NULL, 1464f4259b30SLisandro Dalcin NULL, 1465f4259b30SLisandro Dalcin /*109*/ NULL, 1466f4259b30SLisandro Dalcin NULL, 1467f4259b30SLisandro Dalcin NULL, 146849a6ff4bSBarry Smith MatGetColumnVector_MPIDense, 14693b49f96aSBarry Smith MatMissingDiagonal_MPIDense, 1470f4259b30SLisandro Dalcin /*114*/ NULL, 1471f4259b30SLisandro Dalcin NULL, 1472f4259b30SLisandro Dalcin NULL, 1473f4259b30SLisandro Dalcin NULL, 1474f4259b30SLisandro Dalcin NULL, 1475f4259b30SLisandro Dalcin /*119*/ NULL, 1476f4259b30SLisandro Dalcin NULL, 1477f4259b30SLisandro Dalcin NULL, 1478f4259b30SLisandro Dalcin NULL, 1479f4259b30SLisandro Dalcin NULL, 1480f4259b30SLisandro Dalcin /*124*/ NULL, 1481a873a8cdSSam Reynolds MatGetColumnReductions_MPIDense, 1482f4259b30SLisandro Dalcin NULL, 1483f4259b30SLisandro Dalcin NULL, 1484f4259b30SLisandro Dalcin NULL, 1485f4259b30SLisandro Dalcin /*129*/ NULL, 1486f4259b30SLisandro Dalcin NULL, 14876718818eSStefano Zampini MatTransposeMatMultSymbolic_MPIDense_MPIDense, 1488cb20be35SHong Zhang MatTransposeMatMultNumeric_MPIDense_MPIDense, 1489f4259b30SLisandro Dalcin NULL, 1490f4259b30SLisandro Dalcin /*134*/ NULL, 1491f4259b30SLisandro Dalcin NULL, 1492f4259b30SLisandro Dalcin NULL, 1493f4259b30SLisandro Dalcin NULL, 1494f4259b30SLisandro Dalcin NULL, 1495f4259b30SLisandro Dalcin /*139*/ NULL, 1496f4259b30SLisandro Dalcin NULL, 1497f4259b30SLisandro Dalcin NULL, 1498f4259b30SLisandro Dalcin NULL, 1499f4259b30SLisandro Dalcin NULL, 15004222ddf1SHong Zhang MatCreateMPIMatConcatenateSeqMat_MPIDense, 1501f4259b30SLisandro Dalcin /*145*/ NULL, 1502f4259b30SLisandro Dalcin NULL, 150399a7f59eSMark Adams NULL, 150499a7f59eSMark Adams NULL, 1505*7fb60732SBarry Smith NULL, 1506*7fb60732SBarry Smith /*150*/ NULL 1507ba337c44SJed Brown }; 15088965ea79SLois Curfman McInnes 15097087cfbeSBarry Smith PetscErrorCode MatMPIDenseSetPreallocation_MPIDense(Mat mat,PetscScalar *data) 1510a23d5eceSKris Buschelman { 1511637a0070SStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)mat->data; 1512637a0070SStefano Zampini PetscBool iscuda; 1513a23d5eceSKris Buschelman 1514a23d5eceSKris Buschelman PetscFunctionBegin; 151528b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 15169566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 15179566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 1518637a0070SStefano Zampini if (!a->A) { 15199566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF,&a->A)); 15209566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A)); 15219566063dSJacob Faibussowitsch PetscCall(MatSetSizes(a->A,mat->rmap->n,mat->cmap->N,mat->rmap->n,mat->cmap->N)); 1522637a0070SStefano Zampini } 15239566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)mat,MATMPIDENSECUDA,&iscuda)); 15249566063dSJacob Faibussowitsch PetscCall(MatSetType(a->A,iscuda ? MATSEQDENSECUDA : MATSEQDENSE)); 15259566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(a->A,data)); 1526637a0070SStefano Zampini mat->preallocated = PETSC_TRUE; 15276f08ad05SPierre Jolivet mat->assembled = PETSC_TRUE; 1528a23d5eceSKris Buschelman PetscFunctionReturn(0); 1529a23d5eceSKris Buschelman } 1530a23d5eceSKris Buschelman 15314e29119aSPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIDense(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 15324e29119aSPierre Jolivet { 15334e29119aSPierre Jolivet Mat B,C; 15344e29119aSPierre Jolivet 15354e29119aSPierre Jolivet PetscFunctionBegin; 15369566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(A,MAT_INITIAL_MATRIX,&C)); 15379566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqAIJ_SeqDense(C,MATSEQDENSE,MAT_INITIAL_MATRIX,&B)); 15389566063dSJacob Faibussowitsch PetscCall(MatDestroy(&C)); 15394e29119aSPierre Jolivet if (reuse == MAT_REUSE_MATRIX) { 15404e29119aSPierre Jolivet C = *newmat; 15414e29119aSPierre Jolivet } else C = NULL; 15429566063dSJacob Faibussowitsch PetscCall(MatCreateMPIMatConcatenateSeqMat(PetscObjectComm((PetscObject)A),B,A->cmap->n,!C?MAT_INITIAL_MATRIX:MAT_REUSE_MATRIX,&C)); 15439566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 15444e29119aSPierre Jolivet if (reuse == MAT_INPLACE_MATRIX) { 15459566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A,&C)); 15464e29119aSPierre Jolivet } else if (reuse == MAT_INITIAL_MATRIX) *newmat = C; 15474e29119aSPierre Jolivet PetscFunctionReturn(0); 15484e29119aSPierre Jolivet } 15494e29119aSPierre Jolivet 15504e29119aSPierre Jolivet PetscErrorCode MatConvert_MPIDense_MPIAIJ(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 15514e29119aSPierre Jolivet { 15524e29119aSPierre Jolivet Mat B,C; 15534e29119aSPierre Jolivet 15544e29119aSPierre Jolivet PetscFunctionBegin; 15559566063dSJacob Faibussowitsch PetscCall(MatDenseGetLocalMatrix(A,&C)); 15569566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqDense_SeqAIJ(C,MATSEQAIJ,MAT_INITIAL_MATRIX,&B)); 15574e29119aSPierre Jolivet if (reuse == MAT_REUSE_MATRIX) { 15584e29119aSPierre Jolivet C = *newmat; 15594e29119aSPierre Jolivet } else C = NULL; 15609566063dSJacob Faibussowitsch PetscCall(MatCreateMPIMatConcatenateSeqMat(PetscObjectComm((PetscObject)A),B,A->cmap->n,!C?MAT_INITIAL_MATRIX:MAT_REUSE_MATRIX,&C)); 15619566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 15624e29119aSPierre Jolivet if (reuse == MAT_INPLACE_MATRIX) { 15639566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A,&C)); 15644e29119aSPierre Jolivet } else if (reuse == MAT_INITIAL_MATRIX) *newmat = C; 15654e29119aSPierre Jolivet PetscFunctionReturn(0); 15664e29119aSPierre Jolivet } 15674e29119aSPierre Jolivet 156865b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 1569cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIDense_Elemental(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 15708baccfbdSHong Zhang { 15718ea901baSHong Zhang Mat mat_elemental; 157232d7a744SHong Zhang PetscScalar *v; 157332d7a744SHong Zhang PetscInt m=A->rmap->n,N=A->cmap->N,rstart=A->rmap->rstart,i,*rows,*cols; 15748ea901baSHong Zhang 15758baccfbdSHong Zhang PetscFunctionBegin; 1576378336b6SHong Zhang if (reuse == MAT_REUSE_MATRIX) { 1577378336b6SHong Zhang mat_elemental = *newmat; 15789566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(*newmat)); 1579378336b6SHong Zhang } else { 15809566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental)); 15819566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat_elemental,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N)); 15829566063dSJacob Faibussowitsch PetscCall(MatSetType(mat_elemental,MATELEMENTAL)); 15839566063dSJacob Faibussowitsch PetscCall(MatSetUp(mat_elemental)); 15849566063dSJacob Faibussowitsch PetscCall(MatSetOption(mat_elemental,MAT_ROW_ORIENTED,PETSC_FALSE)); 1585378336b6SHong Zhang } 1586378336b6SHong Zhang 15879566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m,&rows,N,&cols)); 158832d7a744SHong Zhang for (i=0; i<N; i++) cols[i] = i; 158932d7a744SHong Zhang for (i=0; i<m; i++) rows[i] = rstart + i; 15908ea901baSHong Zhang 1591637a0070SStefano Zampini /* PETSc-Elemental interface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */ 15929566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(A,&v)); 15939566063dSJacob Faibussowitsch PetscCall(MatSetValues(mat_elemental,m,rows,N,cols,v,ADD_VALUES)); 15949566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY)); 15959566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY)); 15969566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(A,&v)); 15979566063dSJacob Faibussowitsch PetscCall(PetscFree2(rows,cols)); 15988ea901baSHong Zhang 1599511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 16009566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A,&mat_elemental)); 16018ea901baSHong Zhang } else { 16028ea901baSHong Zhang *newmat = mat_elemental; 16038ea901baSHong Zhang } 16048baccfbdSHong Zhang PetscFunctionReturn(0); 16058baccfbdSHong Zhang } 160665b80a83SHong Zhang #endif 16078baccfbdSHong Zhang 1608af53bab2SHong Zhang static PetscErrorCode MatDenseGetColumn_MPIDense(Mat A,PetscInt col,PetscScalar **vals) 160986aefd0dSHong Zhang { 161086aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 161186aefd0dSHong Zhang 161286aefd0dSHong Zhang PetscFunctionBegin; 16139566063dSJacob Faibussowitsch PetscCall(MatDenseGetColumn(mat->A,col,vals)); 161486aefd0dSHong Zhang PetscFunctionReturn(0); 161586aefd0dSHong Zhang } 161686aefd0dSHong Zhang 1617af53bab2SHong Zhang static PetscErrorCode MatDenseRestoreColumn_MPIDense(Mat A,PetscScalar **vals) 161886aefd0dSHong Zhang { 161986aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 162086aefd0dSHong Zhang 162186aefd0dSHong Zhang PetscFunctionBegin; 16229566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreColumn(mat->A,vals)); 162386aefd0dSHong Zhang PetscFunctionReturn(0); 162486aefd0dSHong Zhang } 162586aefd0dSHong Zhang 162694e2cb23SJakub Kruzik PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIDense(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 162794e2cb23SJakub Kruzik { 162894e2cb23SJakub Kruzik Mat_MPIDense *mat; 162994e2cb23SJakub Kruzik PetscInt m,nloc,N; 163094e2cb23SJakub Kruzik 163194e2cb23SJakub Kruzik PetscFunctionBegin; 16329566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat,&m,&N)); 16339566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(inmat,NULL,&nloc)); 163494e2cb23SJakub Kruzik if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 163594e2cb23SJakub Kruzik PetscInt sum; 163694e2cb23SJakub Kruzik 163794e2cb23SJakub Kruzik if (n == PETSC_DECIDE) { 16389566063dSJacob Faibussowitsch PetscCall(PetscSplitOwnership(comm,&n,&N)); 163994e2cb23SJakub Kruzik } 164094e2cb23SJakub Kruzik /* Check sum(n) = N */ 16411c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm)); 164208401ef6SPierre Jolivet PetscCheck(sum == N,PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns %" PetscInt_FMT " != global columns %" PetscInt_FMT,sum,N); 164394e2cb23SJakub Kruzik 16449566063dSJacob Faibussowitsch PetscCall(MatCreateDense(comm,m,n,PETSC_DETERMINE,N,NULL,outmat)); 16459566063dSJacob Faibussowitsch PetscCall(MatSetOption(*outmat,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE)); 164694e2cb23SJakub Kruzik } 164794e2cb23SJakub Kruzik 164894e2cb23SJakub Kruzik /* numeric phase */ 164994e2cb23SJakub Kruzik mat = (Mat_MPIDense*)(*outmat)->data; 16509566063dSJacob Faibussowitsch PetscCall(MatCopy(inmat,mat->A,SAME_NONZERO_PATTERN)); 165194e2cb23SJakub Kruzik PetscFunctionReturn(0); 165294e2cb23SJakub Kruzik } 165394e2cb23SJakub Kruzik 1654637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1655637a0070SStefano Zampini PetscErrorCode MatConvert_MPIDenseCUDA_MPIDense(Mat M,MatType type,MatReuse reuse,Mat *newmat) 1656637a0070SStefano Zampini { 1657637a0070SStefano Zampini Mat B; 1658637a0070SStefano Zampini Mat_MPIDense *m; 1659637a0070SStefano Zampini 1660637a0070SStefano Zampini PetscFunctionBegin; 1661637a0070SStefano Zampini if (reuse == MAT_INITIAL_MATRIX) { 16629566063dSJacob Faibussowitsch PetscCall(MatDuplicate(M,MAT_COPY_VALUES,newmat)); 1663637a0070SStefano Zampini } else if (reuse == MAT_REUSE_MATRIX) { 16649566063dSJacob Faibussowitsch PetscCall(MatCopy(M,*newmat,SAME_NONZERO_PATTERN)); 1665637a0070SStefano Zampini } 1666637a0070SStefano Zampini 1667637a0070SStefano Zampini B = *newmat; 16689566063dSJacob Faibussowitsch PetscCall(MatBindToCPU_MPIDenseCUDA(B,PETSC_TRUE)); 16699566063dSJacob Faibussowitsch PetscCall(PetscFree(B->defaultvectype)); 16709566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(VECSTANDARD,&B->defaultvectype)); 16719566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B,MATMPIDENSE)); 16729566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpidensecuda_mpidense_C",NULL)); 16739566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaij_mpidensecuda_C",NULL)); 16749566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaijcusparse_mpidensecuda_C",NULL)); 16759566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaij_C",NULL)); 16769566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaijcusparse_C",NULL)); 16779566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArray_C",NULL)); 16789566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayRead_C",NULL)); 16799566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayWrite_C",NULL)); 16809566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArray_C",NULL)); 16819566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayRead_C",NULL)); 16829566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayWrite_C",NULL)); 16839566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAPlaceArray_C",NULL)); 16849566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAResetArray_C",NULL)); 16859566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAReplaceArray_C",NULL)); 1686637a0070SStefano Zampini m = (Mat_MPIDense*)(B)->data; 1687637a0070SStefano Zampini if (m->A) { 16889566063dSJacob Faibussowitsch PetscCall(MatConvert(m->A,MATSEQDENSE,MAT_INPLACE_MATRIX,&m->A)); 1689637a0070SStefano Zampini } 1690637a0070SStefano Zampini B->ops->bindtocpu = NULL; 1691637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_CPU; 1692637a0070SStefano Zampini PetscFunctionReturn(0); 1693637a0070SStefano Zampini } 1694637a0070SStefano Zampini 1695637a0070SStefano Zampini PetscErrorCode MatConvert_MPIDense_MPIDenseCUDA(Mat M,MatType type,MatReuse reuse,Mat *newmat) 1696637a0070SStefano Zampini { 1697637a0070SStefano Zampini Mat B; 1698637a0070SStefano Zampini Mat_MPIDense *m; 1699637a0070SStefano Zampini 1700637a0070SStefano Zampini PetscFunctionBegin; 1701637a0070SStefano Zampini if (reuse == MAT_INITIAL_MATRIX) { 17029566063dSJacob Faibussowitsch PetscCall(MatDuplicate(M,MAT_COPY_VALUES,newmat)); 1703637a0070SStefano Zampini } else if (reuse == MAT_REUSE_MATRIX) { 17049566063dSJacob Faibussowitsch PetscCall(MatCopy(M,*newmat,SAME_NONZERO_PATTERN)); 1705637a0070SStefano Zampini } 1706637a0070SStefano Zampini 1707637a0070SStefano Zampini B = *newmat; 17089566063dSJacob Faibussowitsch PetscCall(PetscFree(B->defaultvectype)); 17099566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(VECCUDA,&B->defaultvectype)); 17109566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B,MATMPIDENSECUDA)); 17119566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpidensecuda_mpidense_C", MatConvert_MPIDenseCUDA_MPIDense)); 17129566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaij_mpidensecuda_C", MatProductSetFromOptions_MPIAIJ_MPIDense)); 17139566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaijcusparse_mpidensecuda_C",MatProductSetFromOptions_MPIAIJ_MPIDense)); 17149566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaij_C", MatProductSetFromOptions_MPIDense_MPIAIJ)); 17159566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaijcusparse_C",MatProductSetFromOptions_MPIDense_MPIAIJ)); 17169566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArray_C", MatDenseCUDAGetArray_MPIDenseCUDA)); 17179566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayRead_C", MatDenseCUDAGetArrayRead_MPIDenseCUDA)); 17189566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayWrite_C", MatDenseCUDAGetArrayWrite_MPIDenseCUDA)); 17199566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArray_C", MatDenseCUDARestoreArray_MPIDenseCUDA)); 17209566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayRead_C", MatDenseCUDARestoreArrayRead_MPIDenseCUDA)); 17219566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayWrite_C", MatDenseCUDARestoreArrayWrite_MPIDenseCUDA)); 17229566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAPlaceArray_C", MatDenseCUDAPlaceArray_MPIDenseCUDA)); 17239566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAResetArray_C", MatDenseCUDAResetArray_MPIDenseCUDA)); 17249566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAReplaceArray_C", MatDenseCUDAReplaceArray_MPIDenseCUDA)); 1725f5ff9c66SStefano Zampini m = (Mat_MPIDense*)(B->data); 1726637a0070SStefano Zampini if (m->A) { 17279566063dSJacob Faibussowitsch PetscCall(MatConvert(m->A,MATSEQDENSECUDA,MAT_INPLACE_MATRIX,&m->A)); 1728637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_BOTH; 1729637a0070SStefano Zampini } else { 1730637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_UNALLOCATED; 1731637a0070SStefano Zampini } 17329566063dSJacob Faibussowitsch PetscCall(MatBindToCPU_MPIDenseCUDA(B,PETSC_FALSE)); 1733637a0070SStefano Zampini 1734637a0070SStefano Zampini B->ops->bindtocpu = MatBindToCPU_MPIDenseCUDA; 1735637a0070SStefano Zampini PetscFunctionReturn(0); 1736637a0070SStefano Zampini } 1737637a0070SStefano Zampini #endif 1738637a0070SStefano Zampini 17396947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVec_MPIDense(Mat A,PetscInt col,Vec *v) 17406947451fSStefano Zampini { 17416947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17426947451fSStefano Zampini PetscInt lda; 17436947451fSStefano Zampini 17446947451fSStefano Zampini PetscFunctionBegin; 174528b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 174628b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 17476947451fSStefano Zampini if (!a->cvec) { 17489566063dSJacob Faibussowitsch PetscCall(VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 17496947451fSStefano Zampini } 17506947451fSStefano Zampini a->vecinuse = col + 1; 17519566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 17529566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(a->A,(PetscScalar**)&a->ptrinuse)); 17539566063dSJacob Faibussowitsch PetscCall(VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 17546947451fSStefano Zampini *v = a->cvec; 17556947451fSStefano Zampini PetscFunctionReturn(0); 17566947451fSStefano Zampini } 17576947451fSStefano Zampini 17586947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVec_MPIDense(Mat A,PetscInt col,Vec *v) 17596947451fSStefano Zampini { 17606947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17616947451fSStefano Zampini 17626947451fSStefano Zampini PetscFunctionBegin; 176328b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 176428b400f6SJacob Faibussowitsch PetscCheck(a->cvec,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector"); 17656947451fSStefano Zampini a->vecinuse = 0; 17669566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(a->A,(PetscScalar**)&a->ptrinuse)); 17679566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 17686947451fSStefano Zampini *v = NULL; 17696947451fSStefano Zampini PetscFunctionReturn(0); 17706947451fSStefano Zampini } 17716947451fSStefano Zampini 17726947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecRead_MPIDense(Mat A,PetscInt col,Vec *v) 17736947451fSStefano Zampini { 17746947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17756947451fSStefano Zampini PetscInt lda; 17766947451fSStefano Zampini 17776947451fSStefano Zampini PetscFunctionBegin; 177828b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 177928b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 17806947451fSStefano Zampini if (!a->cvec) { 17819566063dSJacob Faibussowitsch PetscCall(VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 17826947451fSStefano Zampini } 17836947451fSStefano Zampini a->vecinuse = col + 1; 17849566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 17859566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A,&a->ptrinuse)); 17869566063dSJacob Faibussowitsch PetscCall(VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 17879566063dSJacob Faibussowitsch PetscCall(VecLockReadPush(a->cvec)); 17886947451fSStefano Zampini *v = a->cvec; 17896947451fSStefano Zampini PetscFunctionReturn(0); 17906947451fSStefano Zampini } 17916947451fSStefano Zampini 17926947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecRead_MPIDense(Mat A,PetscInt col,Vec *v) 17936947451fSStefano Zampini { 17946947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17956947451fSStefano Zampini 17966947451fSStefano Zampini PetscFunctionBegin; 17975f80ce2aSJacob Faibussowitsch PetscCheck(a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 17985f80ce2aSJacob Faibussowitsch PetscCheck(a->cvec,PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 17996947451fSStefano Zampini a->vecinuse = 0; 18009566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A,&a->ptrinuse)); 18019566063dSJacob Faibussowitsch PetscCall(VecLockReadPop(a->cvec)); 18029566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 18036947451fSStefano Zampini *v = NULL; 18046947451fSStefano Zampini PetscFunctionReturn(0); 18056947451fSStefano Zampini } 18066947451fSStefano Zampini 18076947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecWrite_MPIDense(Mat A,PetscInt col,Vec *v) 18086947451fSStefano Zampini { 18096947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 18106947451fSStefano Zampini PetscInt lda; 18116947451fSStefano Zampini 18126947451fSStefano Zampini PetscFunctionBegin; 18135f80ce2aSJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 18145f80ce2aSJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 18156947451fSStefano Zampini if (!a->cvec) { 18169566063dSJacob Faibussowitsch PetscCall(VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 18176947451fSStefano Zampini } 18186947451fSStefano Zampini a->vecinuse = col + 1; 18199566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 18209566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(a->A,(PetscScalar**)&a->ptrinuse)); 18219566063dSJacob Faibussowitsch PetscCall(VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 18226947451fSStefano Zampini *v = a->cvec; 18236947451fSStefano Zampini PetscFunctionReturn(0); 18246947451fSStefano Zampini } 18256947451fSStefano Zampini 18266947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDense(Mat A,PetscInt col,Vec *v) 18276947451fSStefano Zampini { 18286947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 18296947451fSStefano Zampini 18306947451fSStefano Zampini PetscFunctionBegin; 18315f80ce2aSJacob Faibussowitsch PetscCheck(a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 18325f80ce2aSJacob Faibussowitsch PetscCheck(a->cvec,PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 18336947451fSStefano Zampini a->vecinuse = 0; 18349566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(a->A,(PetscScalar**)&a->ptrinuse)); 18359566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 18366947451fSStefano Zampini *v = NULL; 18376947451fSStefano Zampini PetscFunctionReturn(0); 18386947451fSStefano Zampini } 18396947451fSStefano Zampini 1840a2748737SPierre Jolivet PetscErrorCode MatDenseGetSubMatrix_MPIDense(Mat A,PetscInt rbegin,PetscInt rend,PetscInt cbegin,PetscInt cend,Mat *v) 18415ea7661aSPierre Jolivet { 18425ea7661aSPierre Jolivet Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1843616b8fbbSStefano Zampini Mat_MPIDense *c; 1844616b8fbbSStefano Zampini MPI_Comm comm; 1845a2748737SPierre Jolivet PetscInt pbegin, pend; 18465ea7661aSPierre Jolivet 18475ea7661aSPierre Jolivet PetscFunctionBegin; 18489566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A,&comm)); 18495f80ce2aSJacob Faibussowitsch PetscCheck(!a->vecinuse,comm,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 18505f80ce2aSJacob Faibussowitsch PetscCheck(!a->matinuse,comm,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1851a2748737SPierre Jolivet pbegin = PetscMax(0,PetscMin(A->rmap->rend,rbegin)-A->rmap->rstart); 1852a2748737SPierre Jolivet pend = PetscMin(A->rmap->n,PetscMax(0,rend-A->rmap->rstart)); 18535ea7661aSPierre Jolivet if (!a->cmat) { 18549566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,&a->cmat)); 18559566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)a->cmat)); 18569566063dSJacob Faibussowitsch PetscCall(MatSetType(a->cmat,((PetscObject)A)->type_name)); 1857a2748737SPierre Jolivet if (rend-rbegin==A->rmap->N) PetscCall(PetscLayoutReference(A->rmap,&a->cmat->rmap)); 1858a2748737SPierre Jolivet else { 1859a2748737SPierre Jolivet PetscCall(PetscLayoutSetLocalSize(a->cmat->rmap,pend-pbegin)); 1860a2748737SPierre Jolivet PetscCall(PetscLayoutSetSize(a->cmat->rmap,rend-rbegin)); 1861a2748737SPierre Jolivet PetscCall(PetscLayoutSetUp(a->cmat->rmap)); 1862a2748737SPierre Jolivet } 18639566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(a->cmat->cmap,cend-cbegin)); 18649566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(a->cmat->cmap)); 1865a2748737SPierre Jolivet } else { 1866a2748737SPierre Jolivet PetscBool same = (PetscBool)(rend-rbegin == a->cmat->rmap->N); 1867a2748737SPierre Jolivet if (same && a->cmat->rmap->N != A->rmap->N) { 1868a2748737SPierre Jolivet same = (PetscBool)(pend-pbegin == a->cmat->rmap->n); 1869a2748737SPierre Jolivet PetscCall(MPIU_Allreduce(MPI_IN_PLACE,&same,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A))); 1870a2748737SPierre Jolivet } 1871a2748737SPierre Jolivet if (!same) { 1872a2748737SPierre Jolivet PetscCall(PetscLayoutDestroy(&a->cmat->rmap)); 1873a2748737SPierre Jolivet PetscCall(PetscLayoutCreate(comm,&a->cmat->rmap)); 1874a2748737SPierre Jolivet PetscCall(PetscLayoutSetLocalSize(a->cmat->rmap,pend-pbegin)); 1875a2748737SPierre Jolivet PetscCall(PetscLayoutSetSize(a->cmat->rmap,rend-rbegin)); 1876a2748737SPierre Jolivet PetscCall(PetscLayoutSetUp(a->cmat->rmap)); 1877a2748737SPierre Jolivet } 1878a2748737SPierre Jolivet if (cend-cbegin != a->cmat->cmap->N) { 18799566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&a->cmat->cmap)); 18809566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm,&a->cmat->cmap)); 18819566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(a->cmat->cmap,cend-cbegin)); 18829566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(a->cmat->cmap)); 18835ea7661aSPierre Jolivet } 1884a2748737SPierre Jolivet } 1885616b8fbbSStefano Zampini c = (Mat_MPIDense*)a->cmat->data; 18865f80ce2aSJacob Faibussowitsch PetscCheck(!c->A,comm,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1887a2748737SPierre Jolivet PetscCall(MatDenseGetSubMatrix(a->A,pbegin,pend,cbegin,cend,&c->A)); 1888616b8fbbSStefano Zampini a->cmat->preallocated = PETSC_TRUE; 1889616b8fbbSStefano Zampini a->cmat->assembled = PETSC_TRUE; 18905ea7661aSPierre Jolivet a->matinuse = cbegin + 1; 18915ea7661aSPierre Jolivet *v = a->cmat; 18925ea7661aSPierre Jolivet PetscFunctionReturn(0); 18935ea7661aSPierre Jolivet } 18945ea7661aSPierre Jolivet 18955ea7661aSPierre Jolivet PetscErrorCode MatDenseRestoreSubMatrix_MPIDense(Mat A,Mat *v) 18965ea7661aSPierre Jolivet { 18975ea7661aSPierre Jolivet Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1898616b8fbbSStefano Zampini Mat_MPIDense *c; 18995ea7661aSPierre Jolivet 19005ea7661aSPierre Jolivet PetscFunctionBegin; 19015f80ce2aSJacob Faibussowitsch PetscCheck(a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetSubMatrix() first"); 19025f80ce2aSJacob Faibussowitsch PetscCheck(a->cmat,PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal matrix"); 19035f80ce2aSJacob Faibussowitsch PetscCheck(*v == a->cmat,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Not the matrix obtained from MatDenseGetSubMatrix()"); 19045ea7661aSPierre Jolivet a->matinuse = 0; 1905616b8fbbSStefano Zampini c = (Mat_MPIDense*)a->cmat->data; 19069566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreSubMatrix(a->A,&c->A)); 19075ea7661aSPierre Jolivet *v = NULL; 19085ea7661aSPierre Jolivet PetscFunctionReturn(0); 19095ea7661aSPierre Jolivet } 19105ea7661aSPierre Jolivet 1911002bc6daSRichard Tran Mills /*MC 1912002bc6daSRichard Tran Mills MATMPIDENSE - MATMPIDENSE = "mpidense" - A matrix type to be used for distributed dense matrices. 1913002bc6daSRichard Tran Mills 1914002bc6daSRichard Tran Mills Options Database Keys: 1915002bc6daSRichard Tran Mills . -mat_type mpidense - sets the matrix type to "mpidense" during a call to MatSetFromOptions() 1916002bc6daSRichard Tran Mills 1917002bc6daSRichard Tran Mills Level: beginner 1918002bc6daSRichard Tran Mills 1919db781477SPatrick Sanan .seealso: `MatCreateDense()` 1920002bc6daSRichard Tran Mills 1921002bc6daSRichard Tran Mills M*/ 19228cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIDense(Mat mat) 1923273d9f13SBarry Smith { 1924273d9f13SBarry Smith Mat_MPIDense *a; 1925273d9f13SBarry Smith 1926273d9f13SBarry Smith PetscFunctionBegin; 19279566063dSJacob Faibussowitsch PetscCall(PetscNewLog(mat,&a)); 1928b0a32e0cSBarry Smith mat->data = (void*)a; 19299566063dSJacob Faibussowitsch PetscCall(PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps))); 1930273d9f13SBarry Smith 1931273d9f13SBarry Smith mat->insertmode = NOT_SET_VALUES; 1932273d9f13SBarry Smith 1933273d9f13SBarry Smith /* build cache for off array entries formed */ 1934273d9f13SBarry Smith a->donotstash = PETSC_FALSE; 19352205254eSKarl Rupp 19369566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)mat),1,&mat->stash)); 1937273d9f13SBarry Smith 1938273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 1939f4259b30SLisandro Dalcin a->lvec = NULL; 1940f4259b30SLisandro Dalcin a->Mvctx = NULL; 1941273d9f13SBarry Smith a->roworiented = PETSC_TRUE; 1942273d9f13SBarry Smith 19439566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",MatDenseGetLDA_MPIDense)); 19449566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseSetLDA_C",MatDenseSetLDA_MPIDense)); 19459566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",MatDenseGetArray_MPIDense)); 19469566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",MatDenseRestoreArray_MPIDense)); 19479566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",MatDenseGetArrayRead_MPIDense)); 19489566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",MatDenseRestoreArrayRead_MPIDense)); 19499566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayWrite_C",MatDenseGetArrayWrite_MPIDense)); 19509566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayWrite_C",MatDenseRestoreArrayWrite_MPIDense)); 19519566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",MatDensePlaceArray_MPIDense)); 19529566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",MatDenseResetArray_MPIDense)); 19539566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseReplaceArray_C",MatDenseReplaceArray_MPIDense)); 19549566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDense)); 19559566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDense)); 19569566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDense)); 19579566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDense)); 19589566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDense)); 19599566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDense)); 19609566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetSubMatrix_C",MatDenseGetSubMatrix_MPIDense)); 19619566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreSubMatrix_C",MatDenseRestoreSubMatrix_MPIDense)); 19629566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpiaij_mpidense_C",MatConvert_MPIAIJ_MPIDense)); 19639566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_mpiaij_C",MatConvert_MPIDense_MPIAIJ)); 19648baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 19659566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",MatConvert_MPIDense_Elemental)); 19668baccfbdSHong Zhang #endif 1967d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 19689566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_scalapack_C",MatConvert_Dense_ScaLAPACK)); 1969d24d4204SJose E. Roman #endif 1970637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 19719566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_mpidensecuda_C",MatConvert_MPIDense_MPIDenseCUDA)); 1972637a0070SStefano Zampini #endif 19739566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",MatMPIDenseSetPreallocation_MPIDense)); 19749566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaij_mpidense_C",MatProductSetFromOptions_MPIAIJ_MPIDense)); 19759566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaij_C",MatProductSetFromOptions_MPIDense_MPIAIJ)); 19766718818eSStefano Zampini #if defined(PETSC_HAVE_CUDA) 19779566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaijcusparse_mpidense_C",MatProductSetFromOptions_MPIAIJ_MPIDense)); 19789566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaijcusparse_C",MatProductSetFromOptions_MPIDense_MPIAIJ)); 19796718818eSStefano Zampini #endif 19808949adfdSHong Zhang 19819566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",MatDenseGetColumn_MPIDense)); 19829566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",MatDenseRestoreColumn_MPIDense)); 19839566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)mat,MATMPIDENSE)); 1984273d9f13SBarry Smith PetscFunctionReturn(0); 1985273d9f13SBarry Smith } 1986273d9f13SBarry Smith 1987209238afSKris Buschelman /*MC 1988637a0070SStefano Zampini MATMPIDENSECUDA - MATMPIDENSECUDA = "mpidensecuda" - A matrix type to be used for distributed dense matrices on GPUs. 1989637a0070SStefano Zampini 1990637a0070SStefano Zampini Options Database Keys: 1991637a0070SStefano Zampini . -mat_type mpidensecuda - sets the matrix type to "mpidensecuda" during a call to MatSetFromOptions() 1992637a0070SStefano Zampini 1993637a0070SStefano Zampini Level: beginner 1994637a0070SStefano Zampini 1995637a0070SStefano Zampini .seealso: 1996637a0070SStefano Zampini 1997637a0070SStefano Zampini M*/ 1998637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1999a4af0ceeSJacob Faibussowitsch #include <petsc/private/deviceimpl.h> 2000637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreate_MPIDenseCUDA(Mat B) 2001637a0070SStefano Zampini { 2002637a0070SStefano Zampini PetscFunctionBegin; 20039566063dSJacob Faibussowitsch PetscCall(PetscDeviceInitialize(PETSC_DEVICE_CUDA)); 20049566063dSJacob Faibussowitsch PetscCall(MatCreate_MPIDense(B)); 20059566063dSJacob Faibussowitsch PetscCall(MatConvert_MPIDense_MPIDenseCUDA(B,MATMPIDENSECUDA,MAT_INPLACE_MATRIX,&B)); 2006637a0070SStefano Zampini PetscFunctionReturn(0); 2007637a0070SStefano Zampini } 2008637a0070SStefano Zampini #endif 2009637a0070SStefano Zampini 2010637a0070SStefano Zampini /*MC 2011002d173eSKris Buschelman MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices. 2012209238afSKris Buschelman 2013209238afSKris Buschelman This matrix type is identical to MATSEQDENSE when constructed with a single process communicator, 2014209238afSKris Buschelman and MATMPIDENSE otherwise. 2015209238afSKris Buschelman 2016209238afSKris Buschelman Options Database Keys: 2017209238afSKris Buschelman . -mat_type dense - sets the matrix type to "dense" during a call to MatSetFromOptions() 2018209238afSKris Buschelman 2019209238afSKris Buschelman Level: beginner 2020209238afSKris Buschelman 2021c2e3fba1SPatrick Sanan .seealso: `MATSEQDENSE`, `MATMPIDENSE`, `MATDENSECUDA` 20226947451fSStefano Zampini M*/ 20236947451fSStefano Zampini 20246947451fSStefano Zampini /*MC 20256947451fSStefano Zampini MATDENSECUDA - MATDENSECUDA = "densecuda" - A matrix type to be used for dense matrices on GPUs. 20266947451fSStefano Zampini 20276947451fSStefano Zampini This matrix type is identical to MATSEQDENSECUDA when constructed with a single process communicator, 20286947451fSStefano Zampini and MATMPIDENSECUDA otherwise. 20296947451fSStefano Zampini 20306947451fSStefano Zampini Options Database Keys: 20316947451fSStefano Zampini . -mat_type densecuda - sets the matrix type to "densecuda" during a call to MatSetFromOptions() 20326947451fSStefano Zampini 20336947451fSStefano Zampini Level: beginner 20346947451fSStefano Zampini 2035c2e3fba1SPatrick Sanan .seealso: `MATSEQDENSECUDA`, `MATMPIDENSECUDA`, `MATDENSE` 2036209238afSKris Buschelman M*/ 2037209238afSKris Buschelman 2038273d9f13SBarry Smith /*@C 2039273d9f13SBarry Smith MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries 2040273d9f13SBarry Smith 20418f490ea3SStefano Zampini Collective 2042273d9f13SBarry Smith 2043273d9f13SBarry Smith Input Parameters: 20441c4f3114SJed Brown . B - the matrix 20450298fd71SBarry Smith - data - optional location of matrix data. Set data=NULL for PETSc 2046273d9f13SBarry Smith to control all matrix memory allocation. 2047273d9f13SBarry Smith 2048273d9f13SBarry Smith Notes: 2049273d9f13SBarry Smith The dense format is fully compatible with standard Fortran 77 2050273d9f13SBarry Smith storage by columns. 2051273d9f13SBarry Smith 2052273d9f13SBarry Smith The data input variable is intended primarily for Fortran programmers 2053273d9f13SBarry Smith who wish to allocate their own matrix memory space. Most users should 20540298fd71SBarry Smith set data=NULL. 2055273d9f13SBarry Smith 2056273d9f13SBarry Smith Level: intermediate 2057273d9f13SBarry Smith 2058db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqDense()`, `MatSetValues()` 2059273d9f13SBarry Smith @*/ 20601c4f3114SJed Brown PetscErrorCode MatMPIDenseSetPreallocation(Mat B,PetscScalar *data) 2061273d9f13SBarry Smith { 2062273d9f13SBarry Smith PetscFunctionBegin; 2063d5ea218eSStefano Zampini PetscValidHeaderSpecific(B,MAT_CLASSID,1); 2064cac4c232SBarry Smith PetscTryMethod(B,"MatMPIDenseSetPreallocation_C",(Mat,PetscScalar*),(B,data)); 2065273d9f13SBarry Smith PetscFunctionReturn(0); 2066273d9f13SBarry Smith } 2067273d9f13SBarry Smith 2068d3042a70SBarry Smith /*@ 2069637a0070SStefano Zampini MatDensePlaceArray - Allows one to replace the array in a dense matrix with an 2070d3042a70SBarry Smith array provided by the user. This is useful to avoid copying an array 2071d3042a70SBarry Smith into a matrix 2072d3042a70SBarry Smith 2073d3042a70SBarry Smith Not Collective 2074d3042a70SBarry Smith 2075d3042a70SBarry Smith Input Parameters: 2076d3042a70SBarry Smith + mat - the matrix 2077d3042a70SBarry Smith - array - the array in column major order 2078d3042a70SBarry Smith 2079d3042a70SBarry Smith Notes: 2080d3042a70SBarry Smith You can return to the original array with a call to MatDenseResetArray(). The user is responsible for freeing this array; it will not be 2081d3042a70SBarry Smith freed when the matrix is destroyed. 2082d3042a70SBarry Smith 2083d3042a70SBarry Smith Level: developer 2084d3042a70SBarry Smith 2085db781477SPatrick Sanan .seealso: `MatDenseGetArray()`, `MatDenseResetArray()`, `VecPlaceArray()`, `VecGetArray()`, `VecRestoreArray()`, `VecReplaceArray()`, `VecResetArray()` 2086d3042a70SBarry Smith 2087d3042a70SBarry Smith @*/ 2088637a0070SStefano Zampini PetscErrorCode MatDensePlaceArray(Mat mat,const PetscScalar *array) 2089d3042a70SBarry Smith { 2090d3042a70SBarry Smith PetscFunctionBegin; 2091d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2092cac4c232SBarry Smith PetscUseMethod(mat,"MatDensePlaceArray_C",(Mat,const PetscScalar*),(mat,array)); 20939566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2094637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 2095637a0070SStefano Zampini mat->offloadmask = PETSC_OFFLOAD_CPU; 2096637a0070SStefano Zampini #endif 2097d3042a70SBarry Smith PetscFunctionReturn(0); 2098d3042a70SBarry Smith } 2099d3042a70SBarry Smith 2100d3042a70SBarry Smith /*@ 2101d3042a70SBarry Smith MatDenseResetArray - Resets the matrix array to that it previously had before the call to MatDensePlaceArray() 2102d3042a70SBarry Smith 2103d3042a70SBarry Smith Not Collective 2104d3042a70SBarry Smith 2105d3042a70SBarry Smith Input Parameters: 2106d3042a70SBarry Smith . mat - the matrix 2107d3042a70SBarry Smith 2108d3042a70SBarry Smith Notes: 2109d3042a70SBarry Smith You can only call this after a call to MatDensePlaceArray() 2110d3042a70SBarry Smith 2111d3042a70SBarry Smith Level: developer 2112d3042a70SBarry Smith 2113db781477SPatrick Sanan .seealso: `MatDenseGetArray()`, `MatDensePlaceArray()`, `VecPlaceArray()`, `VecGetArray()`, `VecRestoreArray()`, `VecReplaceArray()`, `VecResetArray()` 2114d3042a70SBarry Smith 2115d3042a70SBarry Smith @*/ 2116d3042a70SBarry Smith PetscErrorCode MatDenseResetArray(Mat mat) 2117d3042a70SBarry Smith { 2118d3042a70SBarry Smith PetscFunctionBegin; 2119d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2120cac4c232SBarry Smith PetscUseMethod(mat,"MatDenseResetArray_C",(Mat),(mat)); 21219566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2122d3042a70SBarry Smith PetscFunctionReturn(0); 2123d3042a70SBarry Smith } 2124d3042a70SBarry Smith 2125d5ea218eSStefano Zampini /*@ 2126d5ea218eSStefano Zampini MatDenseReplaceArray - Allows one to replace the array in a dense matrix with an 2127d5ea218eSStefano Zampini array provided by the user. This is useful to avoid copying an array 2128d5ea218eSStefano Zampini into a matrix 2129d5ea218eSStefano Zampini 2130d5ea218eSStefano Zampini Not Collective 2131d5ea218eSStefano Zampini 2132d5ea218eSStefano Zampini Input Parameters: 2133d5ea218eSStefano Zampini + mat - the matrix 2134d5ea218eSStefano Zampini - array - the array in column major order 2135d5ea218eSStefano Zampini 2136d5ea218eSStefano Zampini Notes: 2137d5ea218eSStefano Zampini The memory passed in MUST be obtained with PetscMalloc() and CANNOT be 2138d5ea218eSStefano Zampini freed by the user. It will be freed when the matrix is destroyed. 2139d5ea218eSStefano Zampini 2140d5ea218eSStefano Zampini Level: developer 2141d5ea218eSStefano Zampini 2142db781477SPatrick Sanan .seealso: `MatDenseGetArray()`, `VecReplaceArray()` 2143d5ea218eSStefano Zampini @*/ 2144d5ea218eSStefano Zampini PetscErrorCode MatDenseReplaceArray(Mat mat,const PetscScalar *array) 2145d5ea218eSStefano Zampini { 2146d5ea218eSStefano Zampini PetscFunctionBegin; 2147d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2148cac4c232SBarry Smith PetscUseMethod(mat,"MatDenseReplaceArray_C",(Mat,const PetscScalar*),(mat,array)); 21499566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2150d5ea218eSStefano Zampini #if defined(PETSC_HAVE_CUDA) 2151d5ea218eSStefano Zampini mat->offloadmask = PETSC_OFFLOAD_CPU; 2152d5ea218eSStefano Zampini #endif 2153d5ea218eSStefano Zampini PetscFunctionReturn(0); 2154d5ea218eSStefano Zampini } 2155d5ea218eSStefano Zampini 2156637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 21578965ea79SLois Curfman McInnes /*@C 2158637a0070SStefano Zampini MatDenseCUDAPlaceArray - Allows one to replace the GPU array in a dense matrix with an 2159637a0070SStefano Zampini array provided by the user. This is useful to avoid copying an array 2160637a0070SStefano Zampini into a matrix 2161637a0070SStefano Zampini 2162637a0070SStefano Zampini Not Collective 2163637a0070SStefano Zampini 2164637a0070SStefano Zampini Input Parameters: 2165637a0070SStefano Zampini + mat - the matrix 2166637a0070SStefano Zampini - array - the array in column major order 2167637a0070SStefano Zampini 2168637a0070SStefano Zampini Notes: 2169637a0070SStefano Zampini You can return to the original array with a call to MatDenseCUDAResetArray(). The user is responsible for freeing this array; it will not be 2170637a0070SStefano Zampini freed when the matrix is destroyed. The array must have been allocated with cudaMalloc(). 2171637a0070SStefano Zampini 2172637a0070SStefano Zampini Level: developer 2173637a0070SStefano Zampini 2174db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDAResetArray()` 2175637a0070SStefano Zampini @*/ 2176637a0070SStefano Zampini PetscErrorCode MatDenseCUDAPlaceArray(Mat mat,const PetscScalar *array) 2177637a0070SStefano Zampini { 2178637a0070SStefano Zampini PetscFunctionBegin; 2179d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2180cac4c232SBarry Smith PetscUseMethod(mat,"MatDenseCUDAPlaceArray_C",(Mat,const PetscScalar*),(mat,array)); 21819566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2182637a0070SStefano Zampini mat->offloadmask = PETSC_OFFLOAD_GPU; 2183637a0070SStefano Zampini PetscFunctionReturn(0); 2184637a0070SStefano Zampini } 2185637a0070SStefano Zampini 2186637a0070SStefano Zampini /*@C 2187637a0070SStefano Zampini MatDenseCUDAResetArray - Resets the matrix array to that it previously had before the call to MatDenseCUDAPlaceArray() 2188637a0070SStefano Zampini 2189637a0070SStefano Zampini Not Collective 2190637a0070SStefano Zampini 2191637a0070SStefano Zampini Input Parameters: 2192637a0070SStefano Zampini . mat - the matrix 2193637a0070SStefano Zampini 2194637a0070SStefano Zampini Notes: 2195637a0070SStefano Zampini You can only call this after a call to MatDenseCUDAPlaceArray() 2196637a0070SStefano Zampini 2197637a0070SStefano Zampini Level: developer 2198637a0070SStefano Zampini 2199db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDAPlaceArray()` 2200637a0070SStefano Zampini 2201637a0070SStefano Zampini @*/ 2202637a0070SStefano Zampini PetscErrorCode MatDenseCUDAResetArray(Mat mat) 2203637a0070SStefano Zampini { 2204637a0070SStefano Zampini PetscFunctionBegin; 2205d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2206cac4c232SBarry Smith PetscUseMethod(mat,"MatDenseCUDAResetArray_C",(Mat),(mat)); 22079566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2208637a0070SStefano Zampini PetscFunctionReturn(0); 2209637a0070SStefano Zampini } 2210637a0070SStefano Zampini 2211637a0070SStefano Zampini /*@C 2212d5ea218eSStefano Zampini MatDenseCUDAReplaceArray - Allows one to replace the GPU array in a dense matrix with an 2213d5ea218eSStefano Zampini array provided by the user. This is useful to avoid copying an array 2214d5ea218eSStefano Zampini into a matrix 2215d5ea218eSStefano Zampini 2216d5ea218eSStefano Zampini Not Collective 2217d5ea218eSStefano Zampini 2218d5ea218eSStefano Zampini Input Parameters: 2219d5ea218eSStefano Zampini + mat - the matrix 2220d5ea218eSStefano Zampini - array - the array in column major order 2221d5ea218eSStefano Zampini 2222d5ea218eSStefano Zampini Notes: 2223d5ea218eSStefano Zampini This permanently replaces the GPU array and frees the memory associated with the old GPU array. 2224d5ea218eSStefano Zampini The memory passed in CANNOT be freed by the user. It will be freed 2225d5ea218eSStefano Zampini when the matrix is destroyed. The array should respect the matrix leading dimension. 2226d5ea218eSStefano Zampini 2227d5ea218eSStefano Zampini Level: developer 2228d5ea218eSStefano Zampini 2229db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDAPlaceArray()`, `MatDenseCUDAResetArray()` 2230d5ea218eSStefano Zampini @*/ 2231d5ea218eSStefano Zampini PetscErrorCode MatDenseCUDAReplaceArray(Mat mat,const PetscScalar *array) 2232d5ea218eSStefano Zampini { 2233d5ea218eSStefano Zampini PetscFunctionBegin; 2234d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2235cac4c232SBarry Smith PetscUseMethod(mat,"MatDenseCUDAReplaceArray_C",(Mat,const PetscScalar*),(mat,array)); 22369566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2237d5ea218eSStefano Zampini mat->offloadmask = PETSC_OFFLOAD_GPU; 2238d5ea218eSStefano Zampini PetscFunctionReturn(0); 2239d5ea218eSStefano Zampini } 2240d5ea218eSStefano Zampini 2241d5ea218eSStefano Zampini /*@C 2242637a0070SStefano Zampini MatDenseCUDAGetArrayWrite - Provides write access to the CUDA buffer inside a dense matrix. 2243637a0070SStefano Zampini 2244637a0070SStefano Zampini Not Collective 2245637a0070SStefano Zampini 2246637a0070SStefano Zampini Input Parameters: 2247637a0070SStefano Zampini . A - the matrix 2248637a0070SStefano Zampini 2249637a0070SStefano Zampini Output Parameters 2250637a0070SStefano Zampini . array - the GPU array in column major order 2251637a0070SStefano Zampini 2252637a0070SStefano Zampini Notes: 2253637a0070SStefano Zampini The data on the GPU may not be updated due to operations done on the CPU. If you need updated data, use MatDenseCUDAGetArray(). The array must be restored with MatDenseCUDARestoreArrayWrite() when no longer needed. 2254637a0070SStefano Zampini 2255637a0070SStefano Zampini Level: developer 2256637a0070SStefano Zampini 2257db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDARestoreArray()`, `MatDenseCUDARestoreArrayWrite()`, `MatDenseCUDAGetArrayRead()`, `MatDenseCUDARestoreArrayRead()` 2258637a0070SStefano Zampini @*/ 2259637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArrayWrite(Mat A, PetscScalar **a) 2260637a0070SStefano Zampini { 2261637a0070SStefano Zampini PetscFunctionBegin; 2262d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2263cac4c232SBarry Smith PetscUseMethod(A,"MatDenseCUDAGetArrayWrite_C",(Mat,PetscScalar**),(A,a)); 22649566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)A)); 2265637a0070SStefano Zampini PetscFunctionReturn(0); 2266637a0070SStefano Zampini } 2267637a0070SStefano Zampini 2268637a0070SStefano Zampini /*@C 2269637a0070SStefano Zampini MatDenseCUDARestoreArrayWrite - Restore write access to the CUDA buffer inside a dense matrix previously obtained with MatDenseCUDAGetArrayWrite(). 2270637a0070SStefano Zampini 2271637a0070SStefano Zampini Not Collective 2272637a0070SStefano Zampini 2273637a0070SStefano Zampini Input Parameters: 2274637a0070SStefano Zampini + A - the matrix 2275637a0070SStefano Zampini - array - the GPU array in column major order 2276637a0070SStefano Zampini 2277637a0070SStefano Zampini Notes: 2278637a0070SStefano Zampini 2279637a0070SStefano Zampini Level: developer 2280637a0070SStefano Zampini 2281db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDARestoreArray()`, `MatDenseCUDAGetArrayWrite()`, `MatDenseCUDARestoreArrayRead()`, `MatDenseCUDAGetArrayRead()` 2282637a0070SStefano Zampini @*/ 2283637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArrayWrite(Mat A, PetscScalar **a) 2284637a0070SStefano Zampini { 2285637a0070SStefano Zampini PetscFunctionBegin; 2286d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2287cac4c232SBarry Smith PetscUseMethod(A,"MatDenseCUDARestoreArrayWrite_C",(Mat,PetscScalar**),(A,a)); 22889566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)A)); 2289637a0070SStefano Zampini A->offloadmask = PETSC_OFFLOAD_GPU; 2290637a0070SStefano Zampini PetscFunctionReturn(0); 2291637a0070SStefano Zampini } 2292637a0070SStefano Zampini 2293637a0070SStefano Zampini /*@C 2294637a0070SStefano Zampini MatDenseCUDAGetArrayRead - Provides read-only access to the CUDA buffer inside a dense matrix. The array must be restored with MatDenseCUDARestoreArrayRead() when no longer needed. 2295637a0070SStefano Zampini 2296637a0070SStefano Zampini Not Collective 2297637a0070SStefano Zampini 2298637a0070SStefano Zampini Input Parameters: 2299637a0070SStefano Zampini . A - the matrix 2300637a0070SStefano Zampini 2301637a0070SStefano Zampini Output Parameters 2302637a0070SStefano Zampini . array - the GPU array in column major order 2303637a0070SStefano Zampini 2304637a0070SStefano Zampini Notes: 2305637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). 2306637a0070SStefano Zampini 2307637a0070SStefano Zampini Level: developer 2308637a0070SStefano Zampini 2309db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDARestoreArray()`, `MatDenseCUDARestoreArrayWrite()`, `MatDenseCUDAGetArrayWrite()`, `MatDenseCUDARestoreArrayRead()` 2310637a0070SStefano Zampini @*/ 2311637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArrayRead(Mat A, const PetscScalar **a) 2312637a0070SStefano Zampini { 2313637a0070SStefano Zampini PetscFunctionBegin; 2314d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2315cac4c232SBarry Smith PetscUseMethod(A,"MatDenseCUDAGetArrayRead_C",(Mat,const PetscScalar**),(A,a)); 2316637a0070SStefano Zampini PetscFunctionReturn(0); 2317637a0070SStefano Zampini } 2318637a0070SStefano Zampini 2319637a0070SStefano Zampini /*@C 2320637a0070SStefano Zampini MatDenseCUDARestoreArrayRead - Restore read-only access to the CUDA buffer inside a dense matrix previously obtained with a call to MatDenseCUDAGetArrayRead(). 2321637a0070SStefano Zampini 2322637a0070SStefano Zampini Not Collective 2323637a0070SStefano Zampini 2324637a0070SStefano Zampini Input Parameters: 2325637a0070SStefano Zampini + A - the matrix 2326637a0070SStefano Zampini - array - the GPU array in column major order 2327637a0070SStefano Zampini 2328637a0070SStefano Zampini Notes: 2329637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). 2330637a0070SStefano Zampini 2331637a0070SStefano Zampini Level: developer 2332637a0070SStefano Zampini 2333db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDARestoreArray()`, `MatDenseCUDARestoreArrayWrite()`, `MatDenseCUDAGetArrayWrite()`, `MatDenseCUDAGetArrayRead()` 2334637a0070SStefano Zampini @*/ 2335637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArrayRead(Mat A, const PetscScalar **a) 2336637a0070SStefano Zampini { 2337637a0070SStefano Zampini PetscFunctionBegin; 2338cac4c232SBarry Smith PetscUseMethod(A,"MatDenseCUDARestoreArrayRead_C",(Mat,const PetscScalar**),(A,a)); 2339637a0070SStefano Zampini PetscFunctionReturn(0); 2340637a0070SStefano Zampini } 2341637a0070SStefano Zampini 2342637a0070SStefano Zampini /*@C 2343637a0070SStefano Zampini MatDenseCUDAGetArray - Provides access to the CUDA buffer inside a dense matrix. The array must be restored with MatDenseCUDARestoreArray() when no longer needed. 2344637a0070SStefano Zampini 2345637a0070SStefano Zampini Not Collective 2346637a0070SStefano Zampini 2347637a0070SStefano Zampini Input Parameters: 2348637a0070SStefano Zampini . A - the matrix 2349637a0070SStefano Zampini 2350637a0070SStefano Zampini Output Parameters 2351637a0070SStefano Zampini . array - the GPU array in column major order 2352637a0070SStefano Zampini 2353637a0070SStefano Zampini Notes: 2354637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). For read-only access, use MatDenseCUDAGetArrayRead(). 2355637a0070SStefano Zampini 2356637a0070SStefano Zampini Level: developer 2357637a0070SStefano Zampini 2358db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArrayRead()`, `MatDenseCUDARestoreArray()`, `MatDenseCUDARestoreArrayWrite()`, `MatDenseCUDAGetArrayWrite()`, `MatDenseCUDARestoreArrayRead()` 2359637a0070SStefano Zampini @*/ 2360637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArray(Mat A, PetscScalar **a) 2361637a0070SStefano Zampini { 2362637a0070SStefano Zampini PetscFunctionBegin; 2363d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2364cac4c232SBarry Smith PetscUseMethod(A,"MatDenseCUDAGetArray_C",(Mat,PetscScalar**),(A,a)); 23659566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)A)); 2366637a0070SStefano Zampini PetscFunctionReturn(0); 2367637a0070SStefano Zampini } 2368637a0070SStefano Zampini 2369637a0070SStefano Zampini /*@C 2370637a0070SStefano Zampini MatDenseCUDARestoreArray - Restore access to the CUDA buffer inside a dense matrix previously obtained with MatDenseCUDAGetArray(). 2371637a0070SStefano Zampini 2372637a0070SStefano Zampini Not Collective 2373637a0070SStefano Zampini 2374637a0070SStefano Zampini Input Parameters: 2375637a0070SStefano Zampini + A - the matrix 2376637a0070SStefano Zampini - array - the GPU array in column major order 2377637a0070SStefano Zampini 2378637a0070SStefano Zampini Notes: 2379637a0070SStefano Zampini 2380637a0070SStefano Zampini Level: developer 2381637a0070SStefano Zampini 2382db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDARestoreArrayWrite()`, `MatDenseCUDAGetArrayWrite()`, `MatDenseCUDARestoreArrayRead()`, `MatDenseCUDAGetArrayRead()` 2383637a0070SStefano Zampini @*/ 2384637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArray(Mat A, PetscScalar **a) 2385637a0070SStefano Zampini { 2386637a0070SStefano Zampini PetscFunctionBegin; 2387d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2388cac4c232SBarry Smith PetscUseMethod(A,"MatDenseCUDARestoreArray_C",(Mat,PetscScalar**),(A,a)); 23899566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)A)); 2390637a0070SStefano Zampini A->offloadmask = PETSC_OFFLOAD_GPU; 2391637a0070SStefano Zampini PetscFunctionReturn(0); 2392637a0070SStefano Zampini } 2393637a0070SStefano Zampini #endif 2394637a0070SStefano Zampini 2395637a0070SStefano Zampini /*@C 2396637a0070SStefano Zampini MatCreateDense - Creates a matrix in dense format. 23978965ea79SLois Curfman McInnes 2398d083f849SBarry Smith Collective 2399db81eaa0SLois Curfman McInnes 24008965ea79SLois Curfman McInnes Input Parameters: 2401db81eaa0SLois Curfman McInnes + comm - MPI communicator 24028965ea79SLois Curfman McInnes . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2403db81eaa0SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 24048965ea79SLois Curfman McInnes . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 2405db81eaa0SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 24066cfe35ddSJose E. Roman - data - optional location of matrix data. Set data=NULL (PETSC_NULL_SCALAR for Fortran users) for PETSc 2407dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 24088965ea79SLois Curfman McInnes 24098965ea79SLois Curfman McInnes Output Parameter: 2410477f1c0bSLois Curfman McInnes . A - the matrix 24118965ea79SLois Curfman McInnes 2412b259b22eSLois Curfman McInnes Notes: 241339ddd567SLois Curfman McInnes The dense format is fully compatible with standard Fortran 77 241439ddd567SLois Curfman McInnes storage by columns. 2415002bc6daSRichard Tran Mills Note that, although local portions of the matrix are stored in column-major 2416002bc6daSRichard Tran Mills order, the matrix is partitioned across MPI ranks by row. 24178965ea79SLois Curfman McInnes 241818f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 241918f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 24206cfe35ddSJose E. Roman set data=NULL (PETSC_NULL_SCALAR for Fortran users). 242118f449edSLois Curfman McInnes 24228965ea79SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 24238965ea79SLois Curfman McInnes (possibly both). 24248965ea79SLois Curfman McInnes 2425027ccd11SLois Curfman McInnes Level: intermediate 2426027ccd11SLois Curfman McInnes 2427db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqDense()`, `MatSetValues()` 24288965ea79SLois Curfman McInnes @*/ 242969b1f4b7SBarry Smith PetscErrorCode MatCreateDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 24308965ea79SLois Curfman McInnes { 24313a40ed3dSBarry Smith PetscFunctionBegin; 24329566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,A)); 24339566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A,m,n,M,N)); 24346f08ad05SPierre Jolivet PetscCall(MatSetType(*A,MATDENSE)); 24359566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(*A,data)); 24366f08ad05SPierre Jolivet PetscCall(MatMPIDenseSetPreallocation(*A,data)); 24373a40ed3dSBarry Smith PetscFunctionReturn(0); 24388965ea79SLois Curfman McInnes } 24398965ea79SLois Curfman McInnes 2440637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 2441637a0070SStefano Zampini /*@C 2442637a0070SStefano Zampini MatCreateDenseCUDA - Creates a matrix in dense format using CUDA. 2443637a0070SStefano Zampini 2444637a0070SStefano Zampini Collective 2445637a0070SStefano Zampini 2446637a0070SStefano Zampini Input Parameters: 2447637a0070SStefano Zampini + comm - MPI communicator 2448637a0070SStefano Zampini . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2449637a0070SStefano Zampini . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 2450637a0070SStefano Zampini . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 2451637a0070SStefano Zampini . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 2452637a0070SStefano Zampini - data - optional location of GPU matrix data. Set data=NULL for PETSc 2453637a0070SStefano Zampini to control matrix memory allocation. 2454637a0070SStefano Zampini 2455637a0070SStefano Zampini Output Parameter: 2456637a0070SStefano Zampini . A - the matrix 2457637a0070SStefano Zampini 2458637a0070SStefano Zampini Notes: 2459637a0070SStefano Zampini 2460637a0070SStefano Zampini Level: intermediate 2461637a0070SStefano Zampini 2462db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateDense()` 2463637a0070SStefano Zampini @*/ 2464637a0070SStefano Zampini PetscErrorCode MatCreateDenseCUDA(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 2465637a0070SStefano Zampini { 2466637a0070SStefano Zampini PetscFunctionBegin; 24679566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,A)); 2468637a0070SStefano Zampini PetscValidLogicalCollectiveBool(*A,!!data,6); 24699566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A,m,n,M,N)); 24706f08ad05SPierre Jolivet PetscCall(MatSetType(*A,MATDENSECUDA)); 24719566063dSJacob Faibussowitsch PetscCall(MatSeqDenseCUDASetPreallocation(*A,data)); 24726f08ad05SPierre Jolivet PetscCall(MatMPIDenseCUDASetPreallocation(*A,data)); 2473637a0070SStefano Zampini PetscFunctionReturn(0); 2474637a0070SStefano Zampini } 2475637a0070SStefano Zampini #endif 2476637a0070SStefano Zampini 24776849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat) 24788965ea79SLois Curfman McInnes { 24798965ea79SLois Curfman McInnes Mat mat; 24803501a2bdSLois Curfman McInnes Mat_MPIDense *a,*oldmat = (Mat_MPIDense*)A->data; 24818965ea79SLois Curfman McInnes 24823a40ed3dSBarry Smith PetscFunctionBegin; 2483f4259b30SLisandro Dalcin *newmat = NULL; 24849566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&mat)); 24859566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N)); 24869566063dSJacob Faibussowitsch PetscCall(MatSetType(mat,((PetscObject)A)->type_name)); 2487834f8fabSBarry Smith a = (Mat_MPIDense*)mat->data; 24885aa7edbeSHong Zhang 2489d5f3da31SBarry Smith mat->factortype = A->factortype; 2490c456f294SBarry Smith mat->assembled = PETSC_TRUE; 2491273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 24928965ea79SLois Curfman McInnes 2493e0fa3b82SLois Curfman McInnes mat->insertmode = NOT_SET_VALUES; 24943782ba37SSatish Balay a->donotstash = oldmat->donotstash; 2495e04c1aa4SHong Zhang 24969566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->rmap,&mat->rmap)); 24979566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->cmap,&mat->cmap)); 24988965ea79SLois Curfman McInnes 24999566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A,cpvalues,&a->A)); 25009566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A)); 250101b82886SBarry Smith 25028965ea79SLois Curfman McInnes *newmat = mat; 25033a40ed3dSBarry Smith PetscFunctionReturn(0); 25048965ea79SLois Curfman McInnes } 25058965ea79SLois Curfman McInnes 2506eb91f321SVaclav Hapla PetscErrorCode MatLoad_MPIDense(Mat newMat, PetscViewer viewer) 2507eb91f321SVaclav Hapla { 250887d5ce66SSatish Balay PetscBool isbinary; 250987d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 251087d5ce66SSatish Balay PetscBool ishdf5; 251187d5ce66SSatish Balay #endif 2512eb91f321SVaclav Hapla 2513eb91f321SVaclav Hapla PetscFunctionBegin; 2514eb91f321SVaclav Hapla PetscValidHeaderSpecific(newMat,MAT_CLASSID,1); 2515eb91f321SVaclav Hapla PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2); 2516eb91f321SVaclav Hapla /* force binary viewer to load .info file if it has not yet done so */ 25179566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 25189566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary)); 251987d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 25209566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERHDF5, &ishdf5)); 252187d5ce66SSatish Balay #endif 2522eb91f321SVaclav Hapla if (isbinary) { 25239566063dSJacob Faibussowitsch PetscCall(MatLoad_Dense_Binary(newMat,viewer)); 2524eb91f321SVaclav Hapla #if defined(PETSC_HAVE_HDF5) 252587d5ce66SSatish Balay } else if (ishdf5) { 25269566063dSJacob Faibussowitsch PetscCall(MatLoad_Dense_HDF5(newMat,viewer)); 2527eb91f321SVaclav Hapla #endif 252898921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)newMat),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)newMat)->type_name); 2529eb91f321SVaclav Hapla PetscFunctionReturn(0); 2530eb91f321SVaclav Hapla } 2531eb91f321SVaclav Hapla 25326718818eSStefano Zampini static PetscErrorCode MatEqual_MPIDense(Mat A,Mat B,PetscBool *flag) 25336e4ee0c6SHong Zhang { 25346e4ee0c6SHong Zhang Mat_MPIDense *matB = (Mat_MPIDense*)B->data,*matA = (Mat_MPIDense*)A->data; 25356e4ee0c6SHong Zhang Mat a,b; 253690ace30eSBarry Smith 25376e4ee0c6SHong Zhang PetscFunctionBegin; 25386e4ee0c6SHong Zhang a = matA->A; 25396e4ee0c6SHong Zhang b = matB->A; 25402cf15c64SPierre Jolivet PetscCall(MatEqual(a,b,flag)); 25412cf15c64SPierre Jolivet PetscCall(MPIU_Allreduce(MPI_IN_PLACE,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A))); 25426e4ee0c6SHong Zhang PetscFunctionReturn(0); 25436e4ee0c6SHong Zhang } 254490ace30eSBarry Smith 25456718818eSStefano Zampini PetscErrorCode MatDestroy_MatTransMatMult_MPIDense_MPIDense(void *data) 2546baa3c1c6SHong Zhang { 25476718818eSStefano Zampini Mat_TransMatMultDense *atb = (Mat_TransMatMultDense *)data; 2548baa3c1c6SHong Zhang 2549baa3c1c6SHong Zhang PetscFunctionBegin; 25509566063dSJacob Faibussowitsch PetscCall(PetscFree2(atb->sendbuf,atb->recvcounts)); 25519566063dSJacob Faibussowitsch PetscCall(MatDestroy(&atb->atb)); 25529566063dSJacob Faibussowitsch PetscCall(PetscFree(atb)); 2553baa3c1c6SHong Zhang PetscFunctionReturn(0); 2554baa3c1c6SHong Zhang } 2555baa3c1c6SHong Zhang 25566718818eSStefano Zampini PetscErrorCode MatDestroy_MatMatTransMult_MPIDense_MPIDense(void *data) 2557cc48ffa7SToby Isaac { 25586718818eSStefano Zampini Mat_MatTransMultDense *abt = (Mat_MatTransMultDense *)data; 2559cc48ffa7SToby Isaac 2560cc48ffa7SToby Isaac PetscFunctionBegin; 25619566063dSJacob Faibussowitsch PetscCall(PetscFree2(abt->buf[0],abt->buf[1])); 25629566063dSJacob Faibussowitsch PetscCall(PetscFree2(abt->recvcounts,abt->recvdispls)); 25639566063dSJacob Faibussowitsch PetscCall(PetscFree(abt)); 2564cc48ffa7SToby Isaac PetscFunctionReturn(0); 2565cc48ffa7SToby Isaac } 2566cc48ffa7SToby Isaac 25676718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 2568cb20be35SHong Zhang { 2569baa3c1c6SHong Zhang Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 25706718818eSStefano Zampini Mat_TransMatMultDense *atb; 2571cb20be35SHong Zhang MPI_Comm comm; 25726718818eSStefano Zampini PetscMPIInt size,*recvcounts; 25736718818eSStefano Zampini PetscScalar *carray,*sendbuf; 2574637a0070SStefano Zampini const PetscScalar *atbarray; 2575a1f9a5e6SStefano Zampini PetscInt i,cN=C->cmap->N,proc,k,j,lda; 2576e68c0b26SHong Zhang const PetscInt *ranges; 2577cb20be35SHong Zhang 2578cb20be35SHong Zhang PetscFunctionBegin; 25796718818eSStefano Zampini MatCheckProduct(C,3); 25805f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 25816718818eSStefano Zampini atb = (Mat_TransMatMultDense *)C->product->data; 25826718818eSStefano Zampini recvcounts = atb->recvcounts; 25836718818eSStefano Zampini sendbuf = atb->sendbuf; 25846718818eSStefano Zampini 25859566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A,&comm)); 25869566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 2587e68c0b26SHong Zhang 2588c5ef1628SHong Zhang /* compute atbarray = aseq^T * bseq */ 25899566063dSJacob Faibussowitsch PetscCall(MatTransposeMatMult(a->A,b->A,atb->atb ? MAT_REUSE_MATRIX : MAT_INITIAL_MATRIX,PETSC_DEFAULT,&atb->atb)); 2590cb20be35SHong Zhang 25919566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRanges(C,&ranges)); 2592cb20be35SHong Zhang 2593660d5466SHong Zhang /* arrange atbarray into sendbuf */ 25949566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(atb->atb,&atbarray)); 25959566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(atb->atb,&lda)); 2596637a0070SStefano Zampini for (proc=0, k=0; proc<size; proc++) { 2597baa3c1c6SHong Zhang for (j=0; j<cN; j++) { 2598a1f9a5e6SStefano Zampini for (i=ranges[proc]; i<ranges[proc+1]; i++) sendbuf[k++] = atbarray[i+j*lda]; 2599cb20be35SHong Zhang } 2600cb20be35SHong Zhang } 26019566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(atb->atb,&atbarray)); 2602637a0070SStefano Zampini 2603c5ef1628SHong Zhang /* sum all atbarray to local values of C */ 26049566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(c->A,&carray)); 26059566063dSJacob Faibussowitsch PetscCallMPI(MPI_Reduce_scatter(sendbuf,carray,recvcounts,MPIU_SCALAR,MPIU_SUM,comm)); 26069566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(c->A,&carray)); 26079566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY)); 26089566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY)); 2609cb20be35SHong Zhang PetscFunctionReturn(0); 2610cb20be35SHong Zhang } 2611cb20be35SHong Zhang 26126718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat C) 2613cb20be35SHong Zhang { 2614cb20be35SHong Zhang MPI_Comm comm; 2615baa3c1c6SHong Zhang PetscMPIInt size; 2616660d5466SHong Zhang PetscInt cm=A->cmap->n,cM,cN=B->cmap->N; 2617baa3c1c6SHong Zhang Mat_TransMatMultDense *atb; 26186718818eSStefano Zampini PetscBool cisdense; 26190acaeb71SStefano Zampini PetscInt i; 26200acaeb71SStefano Zampini const PetscInt *ranges; 2621cb20be35SHong Zhang 2622cb20be35SHong Zhang PetscFunctionBegin; 26236718818eSStefano Zampini MatCheckProduct(C,3); 26245f80ce2aSJacob Faibussowitsch PetscCheck(!C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty"); 26259566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A,&comm)); 2626cb20be35SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) { 262798921bdaSJacob Faibussowitsch SETERRQ(comm,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != B (%" PetscInt_FMT ",%" PetscInt_FMT ")",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 2628cb20be35SHong Zhang } 2629cb20be35SHong Zhang 26304222ddf1SHong Zhang /* create matrix product C */ 26319566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C,cm,B->cmap->n,A->cmap->N,B->cmap->N)); 26329566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C,&cisdense,MATMPIDENSE,MATMPIDENSECUDA,"")); 26336718818eSStefano Zampini if (!cisdense) { 26349566063dSJacob Faibussowitsch PetscCall(MatSetType(C,((PetscObject)A)->type_name)); 26356718818eSStefano Zampini } 26369566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 2637baa3c1c6SHong Zhang 26384222ddf1SHong Zhang /* create data structure for reuse C */ 26399566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 26409566063dSJacob Faibussowitsch PetscCall(PetscNew(&atb)); 26414222ddf1SHong Zhang cM = C->rmap->N; 26429566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(cM*cN,&atb->sendbuf,size,&atb->recvcounts)); 26439566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRanges(C,&ranges)); 26440acaeb71SStefano Zampini for (i=0; i<size; i++) atb->recvcounts[i] = (ranges[i+1] - ranges[i])*cN; 2645baa3c1c6SHong Zhang 26466718818eSStefano Zampini C->product->data = atb; 26476718818eSStefano Zampini C->product->destroy = MatDestroy_MatTransMatMult_MPIDense_MPIDense; 2648cb20be35SHong Zhang PetscFunctionReturn(0); 2649cb20be35SHong Zhang } 2650cb20be35SHong Zhang 26514222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat A, Mat B, PetscReal fill, Mat C) 2652cb20be35SHong Zhang { 2653cc48ffa7SToby Isaac MPI_Comm comm; 2654cc48ffa7SToby Isaac PetscMPIInt i, size; 2655cc48ffa7SToby Isaac PetscInt maxRows, bufsiz; 2656cc48ffa7SToby Isaac PetscMPIInt tag; 26574222ddf1SHong Zhang PetscInt alg; 2658cc48ffa7SToby Isaac Mat_MatTransMultDense *abt; 26594222ddf1SHong Zhang Mat_Product *product = C->product; 26604222ddf1SHong Zhang PetscBool flg; 2661cc48ffa7SToby Isaac 2662cc48ffa7SToby Isaac PetscFunctionBegin; 26636718818eSStefano Zampini MatCheckProduct(C,4); 26645f80ce2aSJacob Faibussowitsch PetscCheck(!C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty"); 26654222ddf1SHong Zhang /* check local size of A and B */ 26665f80ce2aSJacob Faibussowitsch PetscCheck(A->cmap->n == B->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local column dimensions are incompatible, A (%" PetscInt_FMT ") != B (%" PetscInt_FMT ")",A->cmap->n,B->cmap->n); 2667cc48ffa7SToby Isaac 26689566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg,"allgatherv",&flg)); 2669637a0070SStefano Zampini alg = flg ? 0 : 1; 2670cc48ffa7SToby Isaac 26714222ddf1SHong Zhang /* setup matrix product C */ 26729566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C,A->rmap->n,B->rmap->n,A->rmap->N,B->rmap->N)); 26739566063dSJacob Faibussowitsch PetscCall(MatSetType(C,MATMPIDENSE)); 26749566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 26759566063dSJacob Faibussowitsch PetscCall(PetscObjectGetNewTag((PetscObject)C,&tag)); 26764222ddf1SHong Zhang 26774222ddf1SHong Zhang /* create data structure for reuse C */ 26789566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C,&comm)); 26799566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 26809566063dSJacob Faibussowitsch PetscCall(PetscNew(&abt)); 2681cc48ffa7SToby Isaac abt->tag = tag; 2682faa55883SToby Isaac abt->alg = alg; 2683faa55883SToby Isaac switch (alg) { 26844222ddf1SHong Zhang case 1: /* alg: "cyclic" */ 2685cc48ffa7SToby Isaac for (maxRows = 0, i = 0; i < size; i++) maxRows = PetscMax(maxRows, (B->rmap->range[i + 1] - B->rmap->range[i])); 2686cc48ffa7SToby Isaac bufsiz = A->cmap->N * maxRows; 26879566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(bufsiz,&(abt->buf[0]),bufsiz,&(abt->buf[1]))); 2688faa55883SToby Isaac break; 26894222ddf1SHong Zhang default: /* alg: "allgatherv" */ 26909566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(B->rmap->n * B->cmap->N, &(abt->buf[0]), B->rmap->N * B->cmap->N, &(abt->buf[1]))); 26919566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(size,&(abt->recvcounts),size+1,&(abt->recvdispls))); 2692faa55883SToby Isaac for (i = 0; i <= size; i++) abt->recvdispls[i] = B->rmap->range[i] * A->cmap->N; 2693faa55883SToby Isaac for (i = 0; i < size; i++) abt->recvcounts[i] = abt->recvdispls[i + 1] - abt->recvdispls[i]; 2694faa55883SToby Isaac break; 2695faa55883SToby Isaac } 2696cc48ffa7SToby Isaac 26976718818eSStefano Zampini C->product->data = abt; 26986718818eSStefano Zampini C->product->destroy = MatDestroy_MatMatTransMult_MPIDense_MPIDense; 26994222ddf1SHong Zhang C->ops->mattransposemultnumeric = MatMatTransposeMultNumeric_MPIDense_MPIDense; 2700cc48ffa7SToby Isaac PetscFunctionReturn(0); 2701cc48ffa7SToby Isaac } 2702cc48ffa7SToby Isaac 2703faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(Mat A, Mat B, Mat C) 2704cc48ffa7SToby Isaac { 2705cc48ffa7SToby Isaac Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 27066718818eSStefano Zampini Mat_MatTransMultDense *abt; 2707cc48ffa7SToby Isaac MPI_Comm comm; 2708cc48ffa7SToby Isaac PetscMPIInt rank,size, sendsiz, recvsiz, sendto, recvfrom, recvisfrom; 2709f4259b30SLisandro Dalcin PetscScalar *sendbuf, *recvbuf=NULL, *cv; 2710cc48ffa7SToby Isaac PetscInt i,cK=A->cmap->N,k,j,bn; 2711cc48ffa7SToby Isaac PetscScalar _DOne=1.0,_DZero=0.0; 2712637a0070SStefano Zampini const PetscScalar *av,*bv; 271323fff9afSBarry Smith PetscBLASInt cm, cn, ck, alda, blda = 0, clda; 2714cc48ffa7SToby Isaac MPI_Request reqs[2]; 2715cc48ffa7SToby Isaac const PetscInt *ranges; 2716cc48ffa7SToby Isaac 2717cc48ffa7SToby Isaac PetscFunctionBegin; 27186718818eSStefano Zampini MatCheckProduct(C,3); 27195f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 27206718818eSStefano Zampini abt = (Mat_MatTransMultDense*)C->product->data; 27219566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C,&comm)); 27229566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm,&rank)); 27239566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 27249566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A,&av)); 27259566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(b->A,&bv)); 27269566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(c->A,&cv)); 27279566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&i)); 27289566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i,&alda)); 27299566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(b->A,&i)); 27309566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i,&blda)); 27319566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(c->A,&i)); 27329566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i,&clda)); 27339566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRanges(B,&ranges)); 2734cc48ffa7SToby Isaac bn = B->rmap->n; 2735637a0070SStefano Zampini if (blda == bn) { 2736637a0070SStefano Zampini sendbuf = (PetscScalar*)bv; 2737cc48ffa7SToby Isaac } else { 2738cc48ffa7SToby Isaac sendbuf = abt->buf[0]; 2739cc48ffa7SToby Isaac for (k = 0, i = 0; i < cK; i++) { 2740cc48ffa7SToby Isaac for (j = 0; j < bn; j++, k++) { 2741637a0070SStefano Zampini sendbuf[k] = bv[i * blda + j]; 2742cc48ffa7SToby Isaac } 2743cc48ffa7SToby Isaac } 2744cc48ffa7SToby Isaac } 2745cc48ffa7SToby Isaac if (size > 1) { 2746cc48ffa7SToby Isaac sendto = (rank + size - 1) % size; 2747cc48ffa7SToby Isaac recvfrom = (rank + size + 1) % size; 2748cc48ffa7SToby Isaac } else { 2749cc48ffa7SToby Isaac sendto = recvfrom = 0; 2750cc48ffa7SToby Isaac } 27519566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(cK,&ck)); 27529566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(c->A->rmap->n,&cm)); 2753cc48ffa7SToby Isaac recvisfrom = rank; 2754cc48ffa7SToby Isaac for (i = 0; i < size; i++) { 2755cc48ffa7SToby Isaac /* we have finished receiving in sending, bufs can be read/modified */ 2756cc48ffa7SToby Isaac PetscInt nextrecvisfrom = (recvisfrom + 1) % size; /* which process the next recvbuf will originate on */ 2757cc48ffa7SToby Isaac PetscInt nextbn = ranges[nextrecvisfrom + 1] - ranges[nextrecvisfrom]; 2758cc48ffa7SToby Isaac 2759cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2760cc48ffa7SToby Isaac /* start the cyclic sends from sendbuf, to recvbuf (which will switch to sendbuf) */ 2761cc48ffa7SToby Isaac sendsiz = cK * bn; 2762cc48ffa7SToby Isaac recvsiz = cK * nextbn; 2763cc48ffa7SToby Isaac recvbuf = (i & 1) ? abt->buf[0] : abt->buf[1]; 27649566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(sendbuf, sendsiz, MPIU_SCALAR, sendto, abt->tag, comm, &reqs[0])); 27659566063dSJacob Faibussowitsch PetscCallMPI(MPI_Irecv(recvbuf, recvsiz, MPIU_SCALAR, recvfrom, abt->tag, comm, &reqs[1])); 2766cc48ffa7SToby Isaac } 2767cc48ffa7SToby Isaac 2768cc48ffa7SToby Isaac /* local aseq * sendbuf^T */ 27699566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(ranges[recvisfrom + 1] - ranges[recvisfrom], &cn)); 2770792fecdfSBarry Smith if (cm && cn && ck) PetscCallBLAS("BLASgemm",BLASgemm_("N","T",&cm,&cn,&ck,&_DOne,av,&alda,sendbuf,&cn,&_DZero,cv + clda * ranges[recvisfrom],&clda)); 2771cc48ffa7SToby Isaac 2772cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2773cc48ffa7SToby Isaac /* wait for the sends and receives to complete, swap sendbuf and recvbuf */ 27749566063dSJacob Faibussowitsch PetscCallMPI(MPI_Waitall(2, reqs, MPI_STATUSES_IGNORE)); 2775cc48ffa7SToby Isaac } 2776cc48ffa7SToby Isaac bn = nextbn; 2777cc48ffa7SToby Isaac recvisfrom = nextrecvisfrom; 2778cc48ffa7SToby Isaac sendbuf = recvbuf; 2779cc48ffa7SToby Isaac } 27809566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A,&av)); 27819566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(b->A,&bv)); 27829566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(c->A,&cv)); 27839566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY)); 27849566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY)); 2785cc48ffa7SToby Isaac PetscFunctionReturn(0); 2786cc48ffa7SToby Isaac } 2787cc48ffa7SToby Isaac 2788faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(Mat A, Mat B, Mat C) 2789faa55883SToby Isaac { 2790faa55883SToby Isaac Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 27916718818eSStefano Zampini Mat_MatTransMultDense *abt; 2792faa55883SToby Isaac MPI_Comm comm; 2793637a0070SStefano Zampini PetscMPIInt size; 2794637a0070SStefano Zampini PetscScalar *cv, *sendbuf, *recvbuf; 2795637a0070SStefano Zampini const PetscScalar *av,*bv; 2796637a0070SStefano Zampini PetscInt blda,i,cK=A->cmap->N,k,j,bn; 2797faa55883SToby Isaac PetscScalar _DOne=1.0,_DZero=0.0; 2798637a0070SStefano Zampini PetscBLASInt cm, cn, ck, alda, clda; 2799faa55883SToby Isaac 2800faa55883SToby Isaac PetscFunctionBegin; 28016718818eSStefano Zampini MatCheckProduct(C,3); 28025f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 28036718818eSStefano Zampini abt = (Mat_MatTransMultDense*)C->product->data; 28049566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A,&comm)); 28059566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 28069566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A,&av)); 28079566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(b->A,&bv)); 28089566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(c->A,&cv)); 28099566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&i)); 28109566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i,&alda)); 28119566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(b->A,&blda)); 28129566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(c->A,&i)); 28139566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i,&clda)); 2814faa55883SToby Isaac /* copy transpose of B into buf[0] */ 2815faa55883SToby Isaac bn = B->rmap->n; 2816faa55883SToby Isaac sendbuf = abt->buf[0]; 2817faa55883SToby Isaac recvbuf = abt->buf[1]; 2818faa55883SToby Isaac for (k = 0, j = 0; j < bn; j++) { 2819faa55883SToby Isaac for (i = 0; i < cK; i++, k++) { 2820637a0070SStefano Zampini sendbuf[k] = bv[i * blda + j]; 2821faa55883SToby Isaac } 2822faa55883SToby Isaac } 28239566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(b->A,&bv)); 28249566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgatherv(sendbuf, bn * cK, MPIU_SCALAR, recvbuf, abt->recvcounts, abt->recvdispls, MPIU_SCALAR, comm)); 28259566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(cK,&ck)); 28269566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(c->A->rmap->n,&cm)); 28279566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(c->A->cmap->n,&cn)); 2828792fecdfSBarry Smith if (cm && cn && ck) PetscCallBLAS("BLASgemm",BLASgemm_("N","N",&cm,&cn,&ck,&_DOne,av,&alda,recvbuf,&ck,&_DZero,cv,&clda)); 28299566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A,&av)); 28309566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(b->A,&bv)); 28319566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(c->A,&cv)); 28329566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY)); 28339566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY)); 2834faa55883SToby Isaac PetscFunctionReturn(0); 2835faa55883SToby Isaac } 2836faa55883SToby Isaac 2837faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat A, Mat B, Mat C) 2838faa55883SToby Isaac { 28396718818eSStefano Zampini Mat_MatTransMultDense *abt; 2840faa55883SToby Isaac 2841faa55883SToby Isaac PetscFunctionBegin; 28426718818eSStefano Zampini MatCheckProduct(C,3); 28435f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 28446718818eSStefano Zampini abt = (Mat_MatTransMultDense*)C->product->data; 2845faa55883SToby Isaac switch (abt->alg) { 2846faa55883SToby Isaac case 1: 28479566063dSJacob Faibussowitsch PetscCall(MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(A, B, C)); 2848faa55883SToby Isaac break; 2849faa55883SToby Isaac default: 28509566063dSJacob Faibussowitsch PetscCall(MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(A, B, C)); 2851faa55883SToby Isaac break; 2852faa55883SToby Isaac } 2853faa55883SToby Isaac PetscFunctionReturn(0); 2854faa55883SToby Isaac } 2855faa55883SToby Isaac 28566718818eSStefano Zampini PetscErrorCode MatDestroy_MatMatMult_MPIDense_MPIDense(void *data) 2857320f2790SHong Zhang { 28586718818eSStefano Zampini Mat_MatMultDense *ab = (Mat_MatMultDense*)data; 2859320f2790SHong Zhang 2860320f2790SHong Zhang PetscFunctionBegin; 28619566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ab->Ce)); 28629566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ab->Ae)); 28639566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ab->Be)); 28649566063dSJacob Faibussowitsch PetscCall(PetscFree(ab)); 2865320f2790SHong Zhang PetscFunctionReturn(0); 2866320f2790SHong Zhang } 2867320f2790SHong Zhang 28685242a7b1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 2869320f2790SHong Zhang PetscErrorCode MatMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 2870320f2790SHong Zhang { 28716718818eSStefano Zampini Mat_MatMultDense *ab; 2872320f2790SHong Zhang 2873320f2790SHong Zhang PetscFunctionBegin; 28746718818eSStefano Zampini MatCheckProduct(C,3); 28755f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Missing product data"); 28766718818eSStefano Zampini ab = (Mat_MatMultDense*)C->product->data; 28779566063dSJacob Faibussowitsch PetscCall(MatConvert_MPIDense_Elemental(A,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Ae)); 28789566063dSJacob Faibussowitsch PetscCall(MatConvert_MPIDense_Elemental(B,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Be)); 28799566063dSJacob Faibussowitsch PetscCall(MatMatMultNumeric_Elemental(ab->Ae,ab->Be,ab->Ce)); 28809566063dSJacob Faibussowitsch PetscCall(MatConvert(ab->Ce,MATMPIDENSE,MAT_REUSE_MATRIX,&C)); 2881320f2790SHong Zhang PetscFunctionReturn(0); 2882320f2790SHong Zhang } 2883320f2790SHong Zhang 28846718818eSStefano Zampini static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat C) 2885320f2790SHong Zhang { 2886320f2790SHong Zhang Mat Ae,Be,Ce; 2887320f2790SHong Zhang Mat_MatMultDense *ab; 2888320f2790SHong Zhang 2889320f2790SHong Zhang PetscFunctionBegin; 28906718818eSStefano Zampini MatCheckProduct(C,4); 28915f80ce2aSJacob Faibussowitsch PetscCheck(!C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty"); 28924222ddf1SHong Zhang /* check local size of A and B */ 2893320f2790SHong Zhang if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend) { 289498921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != B (%" PetscInt_FMT ",%" PetscInt_FMT ")",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 2895320f2790SHong Zhang } 2896320f2790SHong Zhang 28974222ddf1SHong Zhang /* create elemental matrices Ae and Be */ 28989566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &Ae)); 28999566063dSJacob Faibussowitsch PetscCall(MatSetSizes(Ae,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N)); 29009566063dSJacob Faibussowitsch PetscCall(MatSetType(Ae,MATELEMENTAL)); 29019566063dSJacob Faibussowitsch PetscCall(MatSetUp(Ae)); 29029566063dSJacob Faibussowitsch PetscCall(MatSetOption(Ae,MAT_ROW_ORIENTED,PETSC_FALSE)); 2903320f2790SHong Zhang 29049566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)B), &Be)); 29059566063dSJacob Faibussowitsch PetscCall(MatSetSizes(Be,PETSC_DECIDE,PETSC_DECIDE,B->rmap->N,B->cmap->N)); 29069566063dSJacob Faibussowitsch PetscCall(MatSetType(Be,MATELEMENTAL)); 29079566063dSJacob Faibussowitsch PetscCall(MatSetUp(Be)); 29089566063dSJacob Faibussowitsch PetscCall(MatSetOption(Be,MAT_ROW_ORIENTED,PETSC_FALSE)); 2909320f2790SHong Zhang 29104222ddf1SHong Zhang /* compute symbolic Ce = Ae*Be */ 29119566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)C),&Ce)); 29129566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_Elemental(Ae,Be,fill,Ce)); 29134222ddf1SHong Zhang 29144222ddf1SHong Zhang /* setup C */ 29159566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C,A->rmap->n,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE)); 29169566063dSJacob Faibussowitsch PetscCall(MatSetType(C,MATDENSE)); 29179566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 2918320f2790SHong Zhang 2919320f2790SHong Zhang /* create data structure for reuse Cdense */ 29209566063dSJacob Faibussowitsch PetscCall(PetscNew(&ab)); 2921320f2790SHong Zhang ab->Ae = Ae; 2922320f2790SHong Zhang ab->Be = Be; 2923320f2790SHong Zhang ab->Ce = Ce; 29246718818eSStefano Zampini 29256718818eSStefano Zampini C->product->data = ab; 29266718818eSStefano Zampini C->product->destroy = MatDestroy_MatMatMult_MPIDense_MPIDense; 29274222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIDense; 2928320f2790SHong Zhang PetscFunctionReturn(0); 2929320f2790SHong Zhang } 29304222ddf1SHong Zhang #endif 29314222ddf1SHong Zhang /* ----------------------------------------------- */ 29324222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 29334222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_AB(Mat C) 2934320f2790SHong Zhang { 2935320f2790SHong Zhang PetscFunctionBegin; 29364222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIDense; 29374222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 2938320f2790SHong Zhang PetscFunctionReturn(0); 2939320f2790SHong Zhang } 29405242a7b1SHong Zhang #endif 294186aefd0dSHong Zhang 29424222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_AtB(Mat C) 29434222ddf1SHong Zhang { 29444222ddf1SHong Zhang Mat_Product *product = C->product; 29454222ddf1SHong Zhang Mat A = product->A,B=product->B; 29464222ddf1SHong Zhang 29474222ddf1SHong Zhang PetscFunctionBegin; 29484222ddf1SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) 294998921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 29506718818eSStefano Zampini C->ops->transposematmultsymbolic = MatTransposeMatMultSymbolic_MPIDense_MPIDense; 29516718818eSStefano Zampini C->ops->productsymbolic = MatProductSymbolic_AtB; 29524222ddf1SHong Zhang PetscFunctionReturn(0); 29534222ddf1SHong Zhang } 29544222ddf1SHong Zhang 29554222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_ABt(Mat C) 29564222ddf1SHong Zhang { 29574222ddf1SHong Zhang Mat_Product *product = C->product; 29584222ddf1SHong Zhang const char *algTypes[2] = {"allgatherv","cyclic"}; 29594222ddf1SHong Zhang PetscInt alg,nalg = 2; 29604222ddf1SHong Zhang PetscBool flg = PETSC_FALSE; 29614222ddf1SHong Zhang 29624222ddf1SHong Zhang PetscFunctionBegin; 29634222ddf1SHong Zhang /* Set default algorithm */ 29644222ddf1SHong Zhang alg = 0; /* default is allgatherv */ 29659566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg,"default",&flg)); 29664222ddf1SHong Zhang if (flg) { 29679566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg])); 29684222ddf1SHong Zhang } 29694222ddf1SHong Zhang 29704222ddf1SHong Zhang /* Get runtime option */ 29714222ddf1SHong Zhang if (product->api_user) { 2972d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatMatTransposeMult","Mat"); 29739566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-matmattransmult_mpidense_mpidense_via","Algorithmic approach","MatMatTransposeMult",algTypes,nalg,algTypes[alg],&alg,&flg)); 2974d0609cedSBarry Smith PetscOptionsEnd(); 29754222ddf1SHong Zhang } else { 2976d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatProduct_ABt","Mat"); 29779566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm","Algorithmic approach","MatProduct_ABt",algTypes,nalg,algTypes[alg],&alg,&flg)); 2978d0609cedSBarry Smith PetscOptionsEnd(); 29794222ddf1SHong Zhang } 29804222ddf1SHong Zhang if (flg) { 29819566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg])); 29824222ddf1SHong Zhang } 29834222ddf1SHong Zhang 29844222ddf1SHong Zhang C->ops->mattransposemultsymbolic = MatMatTransposeMultSymbolic_MPIDense_MPIDense; 29854222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_ABt; 29864222ddf1SHong Zhang PetscFunctionReturn(0); 29874222ddf1SHong Zhang } 29884222ddf1SHong Zhang 29894222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense(Mat C) 29904222ddf1SHong Zhang { 29914222ddf1SHong Zhang Mat_Product *product = C->product; 29924222ddf1SHong Zhang 29934222ddf1SHong Zhang PetscFunctionBegin; 29944222ddf1SHong Zhang switch (product->type) { 29954222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 29964222ddf1SHong Zhang case MATPRODUCT_AB: 29979566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIDense_AB(C)); 29984222ddf1SHong Zhang break; 29994222ddf1SHong Zhang #endif 30004222ddf1SHong Zhang case MATPRODUCT_AtB: 30019566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIDense_AtB(C)); 30024222ddf1SHong Zhang break; 30034222ddf1SHong Zhang case MATPRODUCT_ABt: 30049566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIDense_ABt(C)); 30054222ddf1SHong Zhang break; 30066718818eSStefano Zampini default: 30076718818eSStefano Zampini break; 30084222ddf1SHong Zhang } 30094222ddf1SHong Zhang PetscFunctionReturn(0); 30104222ddf1SHong Zhang } 3011