1be1d678aSKris Buschelman 2ed3cc1f0SBarry Smith /* 3ed3cc1f0SBarry Smith Basic functions for basic parallel dense matrices. 4ed3cc1f0SBarry Smith */ 5ed3cc1f0SBarry Smith 604fea9ffSBarry Smith 7c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h> /*I "petscmat.h" I*/ 88949adfdSHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 9baa3c1c6SHong Zhang #include <petscblaslapack.h> 108965ea79SLois Curfman McInnes 11ab92ecdeSBarry Smith /*@ 12ab92ecdeSBarry Smith 13ab92ecdeSBarry Smith MatDenseGetLocalMatrix - For a MATMPIDENSE or MATSEQDENSE matrix returns the sequential 14ab92ecdeSBarry Smith matrix that represents the operator. For sequential matrices it returns itself. 15ab92ecdeSBarry Smith 16ab92ecdeSBarry Smith Input Parameter: 17ab92ecdeSBarry Smith . A - the Seq or MPI dense matrix 18ab92ecdeSBarry Smith 19ab92ecdeSBarry Smith Output Parameter: 20ab92ecdeSBarry Smith . B - the inner matrix 21ab92ecdeSBarry Smith 228e6c10adSSatish Balay Level: intermediate 238e6c10adSSatish Balay 24ab92ecdeSBarry Smith @*/ 25ab92ecdeSBarry Smith PetscErrorCode MatDenseGetLocalMatrix(Mat A,Mat *B) 26ab92ecdeSBarry Smith { 27ab92ecdeSBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 28ab92ecdeSBarry Smith PetscErrorCode ierr; 29ace3abfcSBarry Smith PetscBool flg; 30ab92ecdeSBarry Smith 31ab92ecdeSBarry Smith PetscFunctionBegin; 32251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIDENSE,&flg);CHKERRQ(ierr); 332205254eSKarl Rupp if (flg) *B = mat->A; 342205254eSKarl Rupp else *B = A; 35ab92ecdeSBarry Smith PetscFunctionReturn(0); 36ab92ecdeSBarry Smith } 37ab92ecdeSBarry Smith 38ba8c8a56SBarry Smith PetscErrorCode MatGetRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 39ba8c8a56SBarry Smith { 40ba8c8a56SBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 41ba8c8a56SBarry Smith PetscErrorCode ierr; 42d0f46423SBarry Smith PetscInt lrow,rstart = A->rmap->rstart,rend = A->rmap->rend; 43ba8c8a56SBarry Smith 44ba8c8a56SBarry Smith PetscFunctionBegin; 45e7e72b3dSBarry Smith if (row < rstart || row >= rend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows"); 46ba8c8a56SBarry Smith lrow = row - rstart; 47ba8c8a56SBarry Smith ierr = MatGetRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v);CHKERRQ(ierr); 48ba8c8a56SBarry Smith PetscFunctionReturn(0); 49ba8c8a56SBarry Smith } 50ba8c8a56SBarry Smith 51ba8c8a56SBarry Smith PetscErrorCode MatRestoreRow_MPIDense(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 52ba8c8a56SBarry Smith { 53ba8c8a56SBarry Smith PetscErrorCode ierr; 54ba8c8a56SBarry Smith 55ba8c8a56SBarry Smith PetscFunctionBegin; 56ba8c8a56SBarry Smith if (idx) {ierr = PetscFree(*idx);CHKERRQ(ierr);} 57ba8c8a56SBarry Smith if (v) {ierr = PetscFree(*v);CHKERRQ(ierr);} 58ba8c8a56SBarry Smith PetscFunctionReturn(0); 59ba8c8a56SBarry Smith } 60ba8c8a56SBarry Smith 6111bd1e4dSLisandro Dalcin PetscErrorCode MatGetDiagonalBlock_MPIDense(Mat A,Mat *a) 620de54da6SSatish Balay { 630de54da6SSatish Balay Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 646849ba73SBarry Smith PetscErrorCode ierr; 65d0f46423SBarry Smith PetscInt m = A->rmap->n,rstart = A->rmap->rstart; 6687828ca2SBarry Smith PetscScalar *array; 670de54da6SSatish Balay MPI_Comm comm; 6811bd1e4dSLisandro Dalcin Mat B; 690de54da6SSatish Balay 700de54da6SSatish Balay PetscFunctionBegin; 71e32f2f54SBarry Smith if (A->rmap->N != A->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only square matrices supported."); 720de54da6SSatish Balay 7311bd1e4dSLisandro Dalcin ierr = PetscObjectQuery((PetscObject)A,"DiagonalBlock",(PetscObject*)&B);CHKERRQ(ierr); 7411bd1e4dSLisandro Dalcin if (!B) { 750de54da6SSatish Balay ierr = PetscObjectGetComm((PetscObject)(mdn->A),&comm);CHKERRQ(ierr); 7611bd1e4dSLisandro Dalcin ierr = MatCreate(comm,&B);CHKERRQ(ierr); 7711bd1e4dSLisandro Dalcin ierr = MatSetSizes(B,m,m,m,m);CHKERRQ(ierr); 7811bd1e4dSLisandro Dalcin ierr = MatSetType(B,((PetscObject)mdn->A)->type_name);CHKERRQ(ierr); 798c778c55SBarry Smith ierr = MatDenseGetArray(mdn->A,&array);CHKERRQ(ierr); 8011bd1e4dSLisandro Dalcin ierr = MatSeqDenseSetPreallocation(B,array+m*rstart);CHKERRQ(ierr); 818c778c55SBarry Smith ierr = MatDenseRestoreArray(mdn->A,&array);CHKERRQ(ierr); 8211bd1e4dSLisandro Dalcin ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 8311bd1e4dSLisandro Dalcin ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 8411bd1e4dSLisandro Dalcin ierr = PetscObjectCompose((PetscObject)A,"DiagonalBlock",(PetscObject)B);CHKERRQ(ierr); 8511bd1e4dSLisandro Dalcin *a = B; 8611bd1e4dSLisandro Dalcin ierr = MatDestroy(&B);CHKERRQ(ierr); 872205254eSKarl Rupp } else *a = B; 880de54da6SSatish Balay PetscFunctionReturn(0); 890de54da6SSatish Balay } 900de54da6SSatish Balay 9113f74950SBarry Smith PetscErrorCode MatSetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],const PetscScalar v[],InsertMode addv) 928965ea79SLois Curfman McInnes { 9339b7565bSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)mat->data; 94dfbe8321SBarry Smith PetscErrorCode ierr; 95d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 96ace3abfcSBarry Smith PetscBool roworiented = A->roworiented; 978965ea79SLois Curfman McInnes 983a40ed3dSBarry Smith PetscFunctionBegin; 998965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 1005ef9f2a5SBarry Smith if (idxm[i] < 0) continue; 101e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 1028965ea79SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 1038965ea79SLois Curfman McInnes row = idxm[i] - rstart; 10439b7565bSBarry Smith if (roworiented) { 10539b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv);CHKERRQ(ierr); 1063a40ed3dSBarry Smith } else { 1078965ea79SLois Curfman McInnes for (j=0; j<n; j++) { 1085ef9f2a5SBarry Smith if (idxn[j] < 0) continue; 109e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 11039b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv);CHKERRQ(ierr); 11139b7565bSBarry Smith } 1128965ea79SLois Curfman McInnes } 1132205254eSKarl Rupp } else if (!A->donotstash) { 1145080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 11539b7565bSBarry Smith if (roworiented) { 116b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,idxm[i],n,idxn,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 117d36fbae8SSatish Balay } else { 118b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,idxm[i],n,idxn,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 11939b7565bSBarry Smith } 120b49de8d1SLois Curfman McInnes } 121b49de8d1SLois Curfman McInnes } 1223a40ed3dSBarry Smith PetscFunctionReturn(0); 123b49de8d1SLois Curfman McInnes } 124b49de8d1SLois Curfman McInnes 12513f74950SBarry Smith PetscErrorCode MatGetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 126b49de8d1SLois Curfman McInnes { 127b49de8d1SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 128dfbe8321SBarry Smith PetscErrorCode ierr; 129d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 130b49de8d1SLois Curfman McInnes 1313a40ed3dSBarry Smith PetscFunctionBegin; 132b49de8d1SLois Curfman McInnes for (i=0; i<m; i++) { 133e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); */ 134e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 135b49de8d1SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 136b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 137b49de8d1SLois Curfman McInnes for (j=0; j<n; j++) { 138e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); */ 139e7e72b3dSBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 140b49de8d1SLois Curfman McInnes ierr = MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j);CHKERRQ(ierr); 141b49de8d1SLois Curfman McInnes } 142e7e72b3dSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 1438965ea79SLois Curfman McInnes } 1443a40ed3dSBarry Smith PetscFunctionReturn(0); 1458965ea79SLois Curfman McInnes } 1468965ea79SLois Curfman McInnes 147d3042a70SBarry Smith static PetscErrorCode MatDenseGetArray_MPIDense(Mat A,PetscScalar *array[]) 148ff14e315SSatish Balay { 149ff14e315SSatish Balay Mat_MPIDense *a = (Mat_MPIDense*)A->data; 150dfbe8321SBarry Smith PetscErrorCode ierr; 151ff14e315SSatish Balay 1523a40ed3dSBarry Smith PetscFunctionBegin; 1538c778c55SBarry Smith ierr = MatDenseGetArray(a->A,array);CHKERRQ(ierr); 1543a40ed3dSBarry Smith PetscFunctionReturn(0); 155ff14e315SSatish Balay } 156ff14e315SSatish Balay 157*8572280aSBarry Smith static PetscErrorCode MatDenseGetArrayRead_MPIDense(Mat A,const PetscScalar *array[]) 158*8572280aSBarry Smith { 159*8572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 160*8572280aSBarry Smith PetscErrorCode ierr; 161*8572280aSBarry Smith 162*8572280aSBarry Smith PetscFunctionBegin; 163*8572280aSBarry Smith ierr = MatDenseGetArrayRead(a->A,array);CHKERRQ(ierr); 164*8572280aSBarry Smith PetscFunctionReturn(0); 165*8572280aSBarry Smith } 166*8572280aSBarry Smith 167d3042a70SBarry Smith static PetscErrorCode MatDensePlaceArray_MPIDense(Mat A,const PetscScalar array[]) 168d3042a70SBarry Smith { 169d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 170d3042a70SBarry Smith PetscErrorCode ierr; 171d3042a70SBarry Smith 172d3042a70SBarry Smith PetscFunctionBegin; 173d3042a70SBarry Smith ierr = MatDensePlaceArray(a->A,array);CHKERRQ(ierr); 174d3042a70SBarry Smith PetscFunctionReturn(0); 175d3042a70SBarry Smith } 176d3042a70SBarry Smith 177d3042a70SBarry Smith static PetscErrorCode MatDenseResetArray_MPIDense(Mat A) 178d3042a70SBarry Smith { 179d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 180d3042a70SBarry Smith PetscErrorCode ierr; 181d3042a70SBarry Smith 182d3042a70SBarry Smith PetscFunctionBegin; 183d3042a70SBarry Smith ierr = MatDenseResetArray(a->A);CHKERRQ(ierr); 184d3042a70SBarry Smith PetscFunctionReturn(0); 185d3042a70SBarry Smith } 186d3042a70SBarry Smith 1877dae84e0SHong Zhang static PetscErrorCode MatCreateSubMatrix_MPIDense(Mat A,IS isrow,IS iscol,MatReuse scall,Mat *B) 188ca3fa75bSLois Curfman McInnes { 189ca3fa75bSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data,*newmatd; 190ca3fa75bSLois Curfman McInnes Mat_SeqDense *lmat = (Mat_SeqDense*)mat->A->data; 1916849ba73SBarry Smith PetscErrorCode ierr; 1924aa3045dSJed Brown PetscInt i,j,rstart,rend,nrows,ncols,Ncols,nlrows,nlcols; 1935d0c19d7SBarry Smith const PetscInt *irow,*icol; 19487828ca2SBarry Smith PetscScalar *av,*bv,*v = lmat->v; 195ca3fa75bSLois Curfman McInnes Mat newmat; 1964aa3045dSJed Brown IS iscol_local; 197ca3fa75bSLois Curfman McInnes 198ca3fa75bSLois Curfman McInnes PetscFunctionBegin; 1994aa3045dSJed Brown ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 200ca3fa75bSLois Curfman McInnes ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr); 2014aa3045dSJed Brown ierr = ISGetIndices(iscol_local,&icol);CHKERRQ(ierr); 202b9b97703SBarry Smith ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr); 203b9b97703SBarry Smith ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr); 2044aa3045dSJed Brown ierr = ISGetSize(iscol,&Ncols);CHKERRQ(ierr); /* global number of columns, size of iscol_local */ 205ca3fa75bSLois Curfman McInnes 206ca3fa75bSLois Curfman McInnes /* No parallel redistribution currently supported! Should really check each index set 2077eba5e9cSLois Curfman McInnes to comfirm that it is OK. ... Currently supports only submatrix same partitioning as 2087eba5e9cSLois Curfman McInnes original matrix! */ 209ca3fa75bSLois Curfman McInnes 210ca3fa75bSLois Curfman McInnes ierr = MatGetLocalSize(A,&nlrows,&nlcols);CHKERRQ(ierr); 2117eba5e9cSLois Curfman McInnes ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr); 212ca3fa75bSLois Curfman McInnes 213ca3fa75bSLois Curfman McInnes /* Check submatrix call */ 214ca3fa75bSLois Curfman McInnes if (scall == MAT_REUSE_MATRIX) { 215e32f2f54SBarry Smith /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */ 2167eba5e9cSLois Curfman McInnes /* Really need to test rows and column sizes! */ 217ca3fa75bSLois Curfman McInnes newmat = *B; 218ca3fa75bSLois Curfman McInnes } else { 219ca3fa75bSLois Curfman McInnes /* Create and fill new matrix */ 220ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&newmat);CHKERRQ(ierr); 2214aa3045dSJed Brown ierr = MatSetSizes(newmat,nrows,ncols,PETSC_DECIDE,Ncols);CHKERRQ(ierr); 2227adad957SLisandro Dalcin ierr = MatSetType(newmat,((PetscObject)A)->type_name);CHKERRQ(ierr); 2230298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr); 224ca3fa75bSLois Curfman McInnes } 225ca3fa75bSLois Curfman McInnes 226ca3fa75bSLois Curfman McInnes /* Now extract the data pointers and do the copy, column at a time */ 227ca3fa75bSLois Curfman McInnes newmatd = (Mat_MPIDense*)newmat->data; 228ca3fa75bSLois Curfman McInnes bv = ((Mat_SeqDense*)newmatd->A->data)->v; 229ca3fa75bSLois Curfman McInnes 2304aa3045dSJed Brown for (i=0; i<Ncols; i++) { 23125a33276SHong Zhang av = v + ((Mat_SeqDense*)mat->A->data)->lda*icol[i]; 232ca3fa75bSLois Curfman McInnes for (j=0; j<nrows; j++) { 2337eba5e9cSLois Curfman McInnes *bv++ = av[irow[j] - rstart]; 234ca3fa75bSLois Curfman McInnes } 235ca3fa75bSLois Curfman McInnes } 236ca3fa75bSLois Curfman McInnes 237ca3fa75bSLois Curfman McInnes /* Assemble the matrices so that the correct flags are set */ 238ca3fa75bSLois Curfman McInnes ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 239ca3fa75bSLois Curfman McInnes ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 240ca3fa75bSLois Curfman McInnes 241ca3fa75bSLois Curfman McInnes /* Free work space */ 242ca3fa75bSLois Curfman McInnes ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr); 2435bdf786aSShri Abhyankar ierr = ISRestoreIndices(iscol_local,&icol);CHKERRQ(ierr); 24432bb1f2dSLisandro Dalcin ierr = ISDestroy(&iscol_local);CHKERRQ(ierr); 245ca3fa75bSLois Curfman McInnes *B = newmat; 246ca3fa75bSLois Curfman McInnes PetscFunctionReturn(0); 247ca3fa75bSLois Curfman McInnes } 248ca3fa75bSLois Curfman McInnes 2498c778c55SBarry Smith PetscErrorCode MatDenseRestoreArray_MPIDense(Mat A,PetscScalar *array[]) 250ff14e315SSatish Balay { 25173a71a0fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 25273a71a0fSBarry Smith PetscErrorCode ierr; 25373a71a0fSBarry Smith 2543a40ed3dSBarry Smith PetscFunctionBegin; 2558c778c55SBarry Smith ierr = MatDenseRestoreArray(a->A,array);CHKERRQ(ierr); 2563a40ed3dSBarry Smith PetscFunctionReturn(0); 257ff14e315SSatish Balay } 258ff14e315SSatish Balay 259*8572280aSBarry Smith PetscErrorCode MatDenseRestoreArrayRead_MPIDense(Mat A,const PetscScalar *array[]) 260*8572280aSBarry Smith { 261*8572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 262*8572280aSBarry Smith PetscErrorCode ierr; 263*8572280aSBarry Smith 264*8572280aSBarry Smith PetscFunctionBegin; 265*8572280aSBarry Smith ierr = MatDenseRestoreArrayRead(a->A,array);CHKERRQ(ierr); 266*8572280aSBarry Smith PetscFunctionReturn(0); 267*8572280aSBarry Smith } 268*8572280aSBarry Smith 269dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode) 2708965ea79SLois Curfman McInnes { 27139ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 272ce94432eSBarry Smith MPI_Comm comm; 273dfbe8321SBarry Smith PetscErrorCode ierr; 27413f74950SBarry Smith PetscInt nstash,reallocs; 2758965ea79SLois Curfman McInnes InsertMode addv; 2768965ea79SLois Curfman McInnes 2773a40ed3dSBarry Smith PetscFunctionBegin; 278ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)mat,&comm);CHKERRQ(ierr); 2798965ea79SLois Curfman McInnes /* make sure all processors are either in INSERTMODE or ADDMODE */ 280b2566f29SBarry Smith ierr = MPIU_Allreduce((PetscEnum*)&mat->insertmode,(PetscEnum*)&addv,1,MPIU_ENUM,MPI_BOR,comm);CHKERRQ(ierr); 281ce94432eSBarry Smith if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ARG_WRONGSTATE,"Cannot mix adds/inserts on different procs"); 282e0fa3b82SLois Curfman McInnes mat->insertmode = addv; /* in case this processor had no cache */ 2838965ea79SLois Curfman McInnes 284d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 2858798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 286ae15b995SBarry Smith ierr = PetscInfo2(mdn->A,"Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 2873a40ed3dSBarry Smith PetscFunctionReturn(0); 2888965ea79SLois Curfman McInnes } 2898965ea79SLois Curfman McInnes 290dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode) 2918965ea79SLois Curfman McInnes { 29239ddd567SLois Curfman McInnes Mat_MPIDense *mdn=(Mat_MPIDense*)mat->data; 2936849ba73SBarry Smith PetscErrorCode ierr; 29413f74950SBarry Smith PetscInt i,*row,*col,flg,j,rstart,ncols; 29513f74950SBarry Smith PetscMPIInt n; 29687828ca2SBarry Smith PetscScalar *val; 2978965ea79SLois Curfman McInnes 2983a40ed3dSBarry Smith PetscFunctionBegin; 2998965ea79SLois Curfman McInnes /* wait on receives */ 3007ef1d9bdSSatish Balay while (1) { 3018798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 3027ef1d9bdSSatish Balay if (!flg) break; 3038965ea79SLois Curfman McInnes 3047ef1d9bdSSatish Balay for (i=0; i<n;) { 3057ef1d9bdSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 3062205254eSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 3072205254eSKarl Rupp if (row[j] != rstart) break; 3082205254eSKarl Rupp } 3097ef1d9bdSSatish Balay if (j < n) ncols = j-i; 3107ef1d9bdSSatish Balay else ncols = n-i; 3117ef1d9bdSSatish Balay /* Now assemble all these values with a single function call */ 3124b4eb8d3SJed Brown ierr = MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr); 3137ef1d9bdSSatish Balay i = j; 3148965ea79SLois Curfman McInnes } 3157ef1d9bdSSatish Balay } 3168798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 3178965ea79SLois Curfman McInnes 31839ddd567SLois Curfman McInnes ierr = MatAssemblyBegin(mdn->A,mode);CHKERRQ(ierr); 31939ddd567SLois Curfman McInnes ierr = MatAssemblyEnd(mdn->A,mode);CHKERRQ(ierr); 3208965ea79SLois Curfman McInnes 3216d4a8577SBarry Smith if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 32239ddd567SLois Curfman McInnes ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 3238965ea79SLois Curfman McInnes } 3243a40ed3dSBarry Smith PetscFunctionReturn(0); 3258965ea79SLois Curfman McInnes } 3268965ea79SLois Curfman McInnes 327dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIDense(Mat A) 3288965ea79SLois Curfman McInnes { 329dfbe8321SBarry Smith PetscErrorCode ierr; 33039ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 3313a40ed3dSBarry Smith 3323a40ed3dSBarry Smith PetscFunctionBegin; 3333a40ed3dSBarry Smith ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 3343a40ed3dSBarry Smith PetscFunctionReturn(0); 3358965ea79SLois Curfman McInnes } 3368965ea79SLois Curfman McInnes 3378965ea79SLois Curfman McInnes /* the code does not do the diagonal entries correctly unless the 3388965ea79SLois Curfman McInnes matrix is square and the column and row owerships are identical. 3398965ea79SLois Curfman McInnes This is a BUG. The only way to fix it seems to be to access 3403501a2bdSLois Curfman McInnes mdn->A and mdn->B directly and not through the MatZeroRows() 3418965ea79SLois Curfman McInnes routine. 3428965ea79SLois Curfman McInnes */ 3432b40b63fSBarry Smith PetscErrorCode MatZeroRows_MPIDense(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 3448965ea79SLois Curfman McInnes { 34539ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 3466849ba73SBarry Smith PetscErrorCode ierr; 347d0f46423SBarry Smith PetscInt i,*owners = A->rmap->range; 34876ec1555SBarry Smith PetscInt *sizes,j,idx,nsends; 34913f74950SBarry Smith PetscInt nmax,*svalues,*starts,*owner,nrecvs; 3507adad957SLisandro Dalcin PetscInt *rvalues,tag = ((PetscObject)A)->tag,count,base,slen,*source; 35113f74950SBarry Smith PetscInt *lens,*lrows,*values; 35213f74950SBarry Smith PetscMPIInt n,imdex,rank = l->rank,size = l->size; 353ce94432eSBarry Smith MPI_Comm comm; 3548965ea79SLois Curfman McInnes MPI_Request *send_waits,*recv_waits; 3558965ea79SLois Curfman McInnes MPI_Status recv_status,*send_status; 356ace3abfcSBarry Smith PetscBool found; 35797b48c8fSBarry Smith const PetscScalar *xx; 35897b48c8fSBarry Smith PetscScalar *bb; 3598965ea79SLois Curfman McInnes 3603a40ed3dSBarry Smith PetscFunctionBegin; 361ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 362ce94432eSBarry Smith if (A->rmap->N != A->cmap->N) SETERRQ(comm,PETSC_ERR_SUP,"Only handles square matrices"); 363b9679d65SBarry Smith if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only handles matrices with identical column and row ownership"); 3648965ea79SLois Curfman McInnes /* first count number of contributors to each processor */ 365f628708eSJed Brown ierr = PetscCalloc1(2*size,&sizes);CHKERRQ(ierr); 366037dbc42SBarry Smith ierr = PetscMalloc1(N+1,&owner);CHKERRQ(ierr); /* see note*/ 3678965ea79SLois Curfman McInnes for (i=0; i<N; i++) { 3688965ea79SLois Curfman McInnes idx = rows[i]; 36935d8aa7fSBarry Smith found = PETSC_FALSE; 3708965ea79SLois Curfman McInnes for (j=0; j<size; j++) { 3718965ea79SLois Curfman McInnes if (idx >= owners[j] && idx < owners[j+1]) { 37276ec1555SBarry Smith sizes[2*j]++; sizes[2*j+1] = 1; owner[i] = j; found = PETSC_TRUE; break; 3738965ea79SLois Curfman McInnes } 3748965ea79SLois Curfman McInnes } 375e32f2f54SBarry Smith if (!found) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Index out of range"); 3768965ea79SLois Curfman McInnes } 3772205254eSKarl Rupp nsends = 0; 37876ec1555SBarry Smith for (i=0; i<size; i++) nsends += sizes[2*i+1]; 3798965ea79SLois Curfman McInnes 3808965ea79SLois Curfman McInnes /* inform other processors of number of messages and max length*/ 38176ec1555SBarry Smith ierr = PetscMaxSum(comm,sizes,&nmax,&nrecvs);CHKERRQ(ierr); 3828965ea79SLois Curfman McInnes 3838965ea79SLois Curfman McInnes /* post receives: */ 384785e854fSJed Brown ierr = PetscMalloc1((nrecvs+1)*(nmax+1),&rvalues);CHKERRQ(ierr); 385854ce69bSBarry Smith ierr = PetscMalloc1(nrecvs+1,&recv_waits);CHKERRQ(ierr); 3868965ea79SLois Curfman McInnes for (i=0; i<nrecvs; i++) { 38713f74950SBarry Smith ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 3888965ea79SLois Curfman McInnes } 3898965ea79SLois Curfman McInnes 3908965ea79SLois Curfman McInnes /* do sends: 3918965ea79SLois Curfman McInnes 1) starts[i] gives the starting index in svalues for stuff going to 3928965ea79SLois Curfman McInnes the ith processor 3938965ea79SLois Curfman McInnes */ 394854ce69bSBarry Smith ierr = PetscMalloc1(N+1,&svalues);CHKERRQ(ierr); 395854ce69bSBarry Smith ierr = PetscMalloc1(nsends+1,&send_waits);CHKERRQ(ierr); 396854ce69bSBarry Smith ierr = PetscMalloc1(size+1,&starts);CHKERRQ(ierr); 3978965ea79SLois Curfman McInnes 3988965ea79SLois Curfman McInnes starts[0] = 0; 39976ec1555SBarry Smith for (i=1; i<size; i++) starts[i] = starts[i-1] + sizes[2*i-2]; 4002205254eSKarl Rupp for (i=0; i<N; i++) svalues[starts[owner[i]]++] = rows[i]; 4012205254eSKarl Rupp 4022205254eSKarl Rupp starts[0] = 0; 40376ec1555SBarry Smith for (i=1; i<size+1; i++) starts[i] = starts[i-1] + sizes[2*i-2]; 4048965ea79SLois Curfman McInnes count = 0; 4058965ea79SLois Curfman McInnes for (i=0; i<size; i++) { 40676ec1555SBarry Smith if (sizes[2*i+1]) { 40776ec1555SBarry Smith ierr = MPI_Isend(svalues+starts[i],sizes[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 4088965ea79SLois Curfman McInnes } 4098965ea79SLois Curfman McInnes } 410606d414cSSatish Balay ierr = PetscFree(starts);CHKERRQ(ierr); 4118965ea79SLois Curfman McInnes 4128965ea79SLois Curfman McInnes base = owners[rank]; 4138965ea79SLois Curfman McInnes 4148965ea79SLois Curfman McInnes /* wait on receives */ 415dcca6d9dSJed Brown ierr = PetscMalloc2(nrecvs,&lens,nrecvs,&source);CHKERRQ(ierr); 41674ed9c26SBarry Smith count = nrecvs; 41774ed9c26SBarry Smith slen = 0; 4188965ea79SLois Curfman McInnes while (count) { 419ca161407SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 4208965ea79SLois Curfman McInnes /* unpack receives into our local space */ 42113f74950SBarry Smith ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr); 4222205254eSKarl Rupp 4238965ea79SLois Curfman McInnes source[imdex] = recv_status.MPI_SOURCE; 4248965ea79SLois Curfman McInnes lens[imdex] = n; 4258965ea79SLois Curfman McInnes slen += n; 4268965ea79SLois Curfman McInnes count--; 4278965ea79SLois Curfman McInnes } 428606d414cSSatish Balay ierr = PetscFree(recv_waits);CHKERRQ(ierr); 4298965ea79SLois Curfman McInnes 4308965ea79SLois Curfman McInnes /* move the data into the send scatter */ 431854ce69bSBarry Smith ierr = PetscMalloc1(slen+1,&lrows);CHKERRQ(ierr); 4328965ea79SLois Curfman McInnes count = 0; 4338965ea79SLois Curfman McInnes for (i=0; i<nrecvs; i++) { 4348965ea79SLois Curfman McInnes values = rvalues + i*nmax; 4358965ea79SLois Curfman McInnes for (j=0; j<lens[i]; j++) { 4368965ea79SLois Curfman McInnes lrows[count++] = values[j] - base; 4378965ea79SLois Curfman McInnes } 4388965ea79SLois Curfman McInnes } 439606d414cSSatish Balay ierr = PetscFree(rvalues);CHKERRQ(ierr); 44074ed9c26SBarry Smith ierr = PetscFree2(lens,source);CHKERRQ(ierr); 441606d414cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 44276ec1555SBarry Smith ierr = PetscFree(sizes);CHKERRQ(ierr); 4438965ea79SLois Curfman McInnes 44497b48c8fSBarry Smith /* fix right hand side if needed */ 44597b48c8fSBarry Smith if (x && b) { 44697b48c8fSBarry Smith ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr); 44797b48c8fSBarry Smith ierr = VecGetArray(b,&bb);CHKERRQ(ierr); 44897b48c8fSBarry Smith for (i=0; i<slen; i++) { 44997b48c8fSBarry Smith bb[lrows[i]] = diag*xx[lrows[i]]; 45097b48c8fSBarry Smith } 45197b48c8fSBarry Smith ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr); 45297b48c8fSBarry Smith ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr); 45397b48c8fSBarry Smith } 45497b48c8fSBarry Smith 4558965ea79SLois Curfman McInnes /* actually zap the local rows */ 456b9679d65SBarry Smith ierr = MatZeroRows(l->A,slen,lrows,0.0,0,0);CHKERRQ(ierr); 457e2eb51b1SBarry Smith if (diag != 0.0) { 458b9679d65SBarry Smith Mat_SeqDense *ll = (Mat_SeqDense*)l->A->data; 459b9679d65SBarry Smith PetscInt m = ll->lda, i; 460b9679d65SBarry Smith 461b9679d65SBarry Smith for (i=0; i<slen; i++) { 462b9679d65SBarry Smith ll->v[lrows[i] + m*(A->cmap->rstart + lrows[i])] = diag; 463b9679d65SBarry Smith } 464b9679d65SBarry Smith } 465606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 4668965ea79SLois Curfman McInnes 4678965ea79SLois Curfman McInnes /* wait on sends */ 4688965ea79SLois Curfman McInnes if (nsends) { 469785e854fSJed Brown ierr = PetscMalloc1(nsends,&send_status);CHKERRQ(ierr); 470ca161407SBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 471606d414cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 4728965ea79SLois Curfman McInnes } 473606d414cSSatish Balay ierr = PetscFree(send_waits);CHKERRQ(ierr); 474606d414cSSatish Balay ierr = PetscFree(svalues);CHKERRQ(ierr); 4753a40ed3dSBarry Smith PetscFunctionReturn(0); 4768965ea79SLois Curfman McInnes } 4778965ea79SLois Curfman McInnes 478cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMult_SeqDense(Mat,Vec,Vec); 479cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultAdd_SeqDense(Mat,Vec,Vec,Vec); 480cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTranspose_SeqDense(Mat,Vec,Vec); 481cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTransposeAdd_SeqDense(Mat,Vec,Vec,Vec); 482cc2e6a90SBarry Smith 483dfbe8321SBarry Smith PetscErrorCode MatMult_MPIDense(Mat mat,Vec xx,Vec yy) 4848965ea79SLois Curfman McInnes { 48539ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 486dfbe8321SBarry Smith PetscErrorCode ierr; 487c456f294SBarry Smith 4883a40ed3dSBarry Smith PetscFunctionBegin; 489ca9f406cSSatish Balay ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 490ca9f406cSSatish Balay ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 491cc2e6a90SBarry Smith ierr = MatMult_SeqDense(mdn->A,mdn->lvec,yy);CHKERRQ(ierr); 4923a40ed3dSBarry Smith PetscFunctionReturn(0); 4938965ea79SLois Curfman McInnes } 4948965ea79SLois Curfman McInnes 495dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz) 4968965ea79SLois Curfman McInnes { 49739ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 498dfbe8321SBarry Smith PetscErrorCode ierr; 499c456f294SBarry Smith 5003a40ed3dSBarry Smith PetscFunctionBegin; 501ca9f406cSSatish Balay ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 502ca9f406cSSatish Balay ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 503cc2e6a90SBarry Smith ierr = MatMultAdd_SeqDense(mdn->A,mdn->lvec,yy,zz);CHKERRQ(ierr); 5043a40ed3dSBarry Smith PetscFunctionReturn(0); 5058965ea79SLois Curfman McInnes } 5068965ea79SLois Curfman McInnes 507dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIDense(Mat A,Vec xx,Vec yy) 508096963f5SLois Curfman McInnes { 509096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 510dfbe8321SBarry Smith PetscErrorCode ierr; 51187828ca2SBarry Smith PetscScalar zero = 0.0; 512096963f5SLois Curfman McInnes 5133a40ed3dSBarry Smith PetscFunctionBegin; 5142dcb1b2aSMatthew Knepley ierr = VecSet(yy,zero);CHKERRQ(ierr); 515cc2e6a90SBarry Smith ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr); 516ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 517ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 5183a40ed3dSBarry Smith PetscFunctionReturn(0); 519096963f5SLois Curfman McInnes } 520096963f5SLois Curfman McInnes 521dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz) 522096963f5SLois Curfman McInnes { 523096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 524dfbe8321SBarry Smith PetscErrorCode ierr; 525096963f5SLois Curfman McInnes 5263a40ed3dSBarry Smith PetscFunctionBegin; 5273501a2bdSLois Curfman McInnes ierr = VecCopy(yy,zz);CHKERRQ(ierr); 528cc2e6a90SBarry Smith ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr); 529ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 530ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 5313a40ed3dSBarry Smith PetscFunctionReturn(0); 532096963f5SLois Curfman McInnes } 533096963f5SLois Curfman McInnes 534dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIDense(Mat A,Vec v) 5358965ea79SLois Curfman McInnes { 53639ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 537096963f5SLois Curfman McInnes Mat_SeqDense *aloc = (Mat_SeqDense*)a->A->data; 538dfbe8321SBarry Smith PetscErrorCode ierr; 539d0f46423SBarry Smith PetscInt len,i,n,m = A->rmap->n,radd; 54087828ca2SBarry Smith PetscScalar *x,zero = 0.0; 541ed3cc1f0SBarry Smith 5423a40ed3dSBarry Smith PetscFunctionBegin; 5432dcb1b2aSMatthew Knepley ierr = VecSet(v,zero);CHKERRQ(ierr); 5441ebc52fbSHong Zhang ierr = VecGetArray(v,&x);CHKERRQ(ierr); 545096963f5SLois Curfman McInnes ierr = VecGetSize(v,&n);CHKERRQ(ierr); 546e32f2f54SBarry Smith if (n != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec"); 547d0f46423SBarry Smith len = PetscMin(a->A->rmap->n,a->A->cmap->n); 548d0f46423SBarry Smith radd = A->rmap->rstart*m; 54944cd7ae7SLois Curfman McInnes for (i=0; i<len; i++) { 550096963f5SLois Curfman McInnes x[i] = aloc->v[radd + i*m + i]; 551096963f5SLois Curfman McInnes } 5521ebc52fbSHong Zhang ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 5533a40ed3dSBarry Smith PetscFunctionReturn(0); 5548965ea79SLois Curfman McInnes } 5558965ea79SLois Curfman McInnes 556dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIDense(Mat mat) 5578965ea79SLois Curfman McInnes { 5583501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 559dfbe8321SBarry Smith PetscErrorCode ierr; 560ed3cc1f0SBarry Smith 5613a40ed3dSBarry Smith PetscFunctionBegin; 562aa482453SBarry Smith #if defined(PETSC_USE_LOG) 563d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D, Cols=%D",mat->rmap->N,mat->cmap->N); 5648965ea79SLois Curfman McInnes #endif 5658798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 5666bf464f9SBarry Smith ierr = MatDestroy(&mdn->A);CHKERRQ(ierr); 5676bf464f9SBarry Smith ierr = VecDestroy(&mdn->lvec);CHKERRQ(ierr); 5686bf464f9SBarry Smith ierr = VecScatterDestroy(&mdn->Mvctx);CHKERRQ(ierr); 56901b82886SBarry Smith 570bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 571dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 5728baccfbdSHong Zhang 5738baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",NULL);CHKERRQ(ierr); 574*8572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",NULL);CHKERRQ(ierr); 575*8572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",NULL);CHKERRQ(ierr); 576*8572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",NULL);CHKERRQ(ierr); 577d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",NULL);CHKERRQ(ierr); 578d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",NULL);CHKERRQ(ierr); 5798baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 5808baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",NULL);CHKERRQ(ierr); 5818baccfbdSHong Zhang #endif 582bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",NULL);CHKERRQ(ierr); 583bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMult_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 584bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 585bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 5868baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMult_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 5878baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultSymbolic_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 5888baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultNumeric_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 5893a40ed3dSBarry Smith PetscFunctionReturn(0); 5908965ea79SLois Curfman McInnes } 59139ddd567SLois Curfman McInnes 5926849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_Binary(Mat mat,PetscViewer viewer) 5938965ea79SLois Curfman McInnes { 59439ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 595dfbe8321SBarry Smith PetscErrorCode ierr; 596aa05aa95SBarry Smith PetscViewerFormat format; 597aa05aa95SBarry Smith int fd; 598d0f46423SBarry Smith PetscInt header[4],mmax,N = mat->cmap->N,i,j,m,k; 599aa05aa95SBarry Smith PetscMPIInt rank,tag = ((PetscObject)viewer)->tag,size; 600578230a0SSatish Balay PetscScalar *work,*v,*vv; 601aa05aa95SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)mdn->A->data; 6027056b6fcSBarry Smith 6033a40ed3dSBarry Smith PetscFunctionBegin; 60439ddd567SLois Curfman McInnes if (mdn->size == 1) { 60539ddd567SLois Curfman McInnes ierr = MatView(mdn->A,viewer);CHKERRQ(ierr); 606aa05aa95SBarry Smith } else { 607aa05aa95SBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 608ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr); 609ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&size);CHKERRQ(ierr); 610aa05aa95SBarry Smith 611aa05aa95SBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 612f4403165SShri Abhyankar if (format == PETSC_VIEWER_NATIVE) { 613aa05aa95SBarry Smith 614aa05aa95SBarry Smith if (!rank) { 615aa05aa95SBarry Smith /* store the matrix as a dense matrix */ 6160700a824SBarry Smith header[0] = MAT_FILE_CLASSID; 617d0f46423SBarry Smith header[1] = mat->rmap->N; 618aa05aa95SBarry Smith header[2] = N; 619aa05aa95SBarry Smith header[3] = MATRIX_BINARY_FORMAT_DENSE; 620aa05aa95SBarry Smith ierr = PetscBinaryWrite(fd,header,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 621aa05aa95SBarry Smith 622aa05aa95SBarry Smith /* get largest work array needed for transposing array */ 623d0f46423SBarry Smith mmax = mat->rmap->n; 624aa05aa95SBarry Smith for (i=1; i<size; i++) { 625d0f46423SBarry Smith mmax = PetscMax(mmax,mat->rmap->range[i+1] - mat->rmap->range[i]); 6268965ea79SLois Curfman McInnes } 627785e854fSJed Brown ierr = PetscMalloc1(mmax*N,&work);CHKERRQ(ierr); 628aa05aa95SBarry Smith 629aa05aa95SBarry Smith /* write out local array, by rows */ 630d0f46423SBarry Smith m = mat->rmap->n; 631aa05aa95SBarry Smith v = a->v; 632aa05aa95SBarry Smith for (j=0; j<N; j++) { 633aa05aa95SBarry Smith for (i=0; i<m; i++) { 634578230a0SSatish Balay work[j + i*N] = *v++; 635aa05aa95SBarry Smith } 636aa05aa95SBarry Smith } 637aa05aa95SBarry Smith ierr = PetscBinaryWrite(fd,work,m*N,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr); 638aa05aa95SBarry Smith /* get largest work array to receive messages from other processes, excludes process zero */ 639aa05aa95SBarry Smith mmax = 0; 640aa05aa95SBarry Smith for (i=1; i<size; i++) { 641d0f46423SBarry Smith mmax = PetscMax(mmax,mat->rmap->range[i+1] - mat->rmap->range[i]); 642aa05aa95SBarry Smith } 643785e854fSJed Brown ierr = PetscMalloc1(mmax*N,&vv);CHKERRQ(ierr); 644aa05aa95SBarry Smith for (k = 1; k < size; k++) { 645f8009846SMatthew Knepley v = vv; 646d0f46423SBarry Smith m = mat->rmap->range[k+1] - mat->rmap->range[k]; 647ce94432eSBarry Smith ierr = MPIULong_Recv(v,m*N,MPIU_SCALAR,k,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 648aa05aa95SBarry Smith 649aa05aa95SBarry Smith for (j = 0; j < N; j++) { 650aa05aa95SBarry Smith for (i = 0; i < m; i++) { 651578230a0SSatish Balay work[j + i*N] = *v++; 652aa05aa95SBarry Smith } 653aa05aa95SBarry Smith } 654aa05aa95SBarry Smith ierr = PetscBinaryWrite(fd,work,m*N,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr); 655aa05aa95SBarry Smith } 656aa05aa95SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 657578230a0SSatish Balay ierr = PetscFree(vv);CHKERRQ(ierr); 658aa05aa95SBarry Smith } else { 659ce94432eSBarry Smith ierr = MPIULong_Send(a->v,mat->rmap->n*mat->cmap->N,MPIU_SCALAR,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 660aa05aa95SBarry Smith } 6616a9046bcSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"To store a parallel dense matrix you must first call PetscViewerPushFormat(viewer,PETSC_VIEWER_NATIVE)"); 662aa05aa95SBarry Smith } 6633a40ed3dSBarry Smith PetscFunctionReturn(0); 6648965ea79SLois Curfman McInnes } 6658965ea79SLois Curfman McInnes 6667da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqDense(Mat,PetscViewer); 6679804daf3SBarry Smith #include <petscdraw.h> 6686849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 6698965ea79SLois Curfman McInnes { 67039ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 671dfbe8321SBarry Smith PetscErrorCode ierr; 6727da1fb6eSBarry Smith PetscMPIInt rank = mdn->rank; 67319fd82e9SBarry Smith PetscViewerType vtype; 674ace3abfcSBarry Smith PetscBool iascii,isdraw; 675b0a32e0cSBarry Smith PetscViewer sviewer; 676f3ef73ceSBarry Smith PetscViewerFormat format; 6778965ea79SLois Curfman McInnes 6783a40ed3dSBarry Smith PetscFunctionBegin; 679251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 680251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 68132077d6dSBarry Smith if (iascii) { 682b0a32e0cSBarry Smith ierr = PetscViewerGetType(viewer,&vtype);CHKERRQ(ierr); 683b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 684456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 6854e220ebcSLois Curfman McInnes MatInfo info; 686888f2ed8SSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 6871575c14dSBarry Smith ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr); 6887b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer," [%d] local rows %D nz %D nz alloced %D mem %D \n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory);CHKERRQ(ierr); 689b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 6901575c14dSBarry Smith ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr); 6915d00a290SHong Zhang ierr = VecScatterView(mdn->Mvctx,viewer);CHKERRQ(ierr); 6923a40ed3dSBarry Smith PetscFunctionReturn(0); 693fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 6943a40ed3dSBarry Smith PetscFunctionReturn(0); 6958965ea79SLois Curfman McInnes } 696f1af5d2fSBarry Smith } else if (isdraw) { 697b0a32e0cSBarry Smith PetscDraw draw; 698ace3abfcSBarry Smith PetscBool isnull; 699f1af5d2fSBarry Smith 700b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 701b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 702f1af5d2fSBarry Smith if (isnull) PetscFunctionReturn(0); 703f1af5d2fSBarry Smith } 70477ed5343SBarry Smith 7057da1fb6eSBarry Smith { 7068965ea79SLois Curfman McInnes /* assemble the entire matrix onto first processor. */ 7078965ea79SLois Curfman McInnes Mat A; 708d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,m,row,i,nz; 709ba8c8a56SBarry Smith PetscInt *cols; 710ba8c8a56SBarry Smith PetscScalar *vals; 7118965ea79SLois Curfman McInnes 712ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr); 7138965ea79SLois Curfman McInnes if (!rank) { 714f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 7153a40ed3dSBarry Smith } else { 716f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 7178965ea79SLois Curfman McInnes } 7187adad957SLisandro Dalcin /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */ 719878740d9SKris Buschelman ierr = MatSetType(A,MATMPIDENSE);CHKERRQ(ierr); 7200298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(A,NULL);CHKERRQ(ierr); 7213bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr); 7228965ea79SLois Curfman McInnes 72339ddd567SLois Curfman McInnes /* Copy the matrix ... This isn't the most efficient means, 72439ddd567SLois Curfman McInnes but it's quick for now */ 72551022da4SBarry Smith A->insertmode = INSERT_VALUES; 7262205254eSKarl Rupp 7272205254eSKarl Rupp row = mat->rmap->rstart; 7282205254eSKarl Rupp m = mdn->A->rmap->n; 7298965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 730ba8c8a56SBarry Smith ierr = MatGetRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 731ba8c8a56SBarry Smith ierr = MatSetValues_MPIDense(A,1,&row,nz,cols,vals,INSERT_VALUES);CHKERRQ(ierr); 732ba8c8a56SBarry Smith ierr = MatRestoreRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 73339ddd567SLois Curfman McInnes row++; 7348965ea79SLois Curfman McInnes } 7358965ea79SLois Curfman McInnes 7366d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 7376d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 7383f08860eSBarry Smith ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 739b9b97703SBarry Smith if (!rank) { 7401a9d3c3cSBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPIDense*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr); 7417da1fb6eSBarry Smith ierr = MatView_SeqDense(((Mat_MPIDense*)(A->data))->A,sviewer);CHKERRQ(ierr); 7428965ea79SLois Curfman McInnes } 7433f08860eSBarry Smith ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 744b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 7456bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 7468965ea79SLois Curfman McInnes } 7473a40ed3dSBarry Smith PetscFunctionReturn(0); 7488965ea79SLois Curfman McInnes } 7498965ea79SLois Curfman McInnes 750dfbe8321SBarry Smith PetscErrorCode MatView_MPIDense(Mat mat,PetscViewer viewer) 7518965ea79SLois Curfman McInnes { 752dfbe8321SBarry Smith PetscErrorCode ierr; 753ace3abfcSBarry Smith PetscBool iascii,isbinary,isdraw,issocket; 7548965ea79SLois Curfman McInnes 755433994e6SBarry Smith PetscFunctionBegin; 756251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 757251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 758251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 759251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 7600f5bd95cSBarry Smith 76132077d6dSBarry Smith if (iascii || issocket || isdraw) { 762f1af5d2fSBarry Smith ierr = MatView_MPIDense_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 7630f5bd95cSBarry Smith } else if (isbinary) { 7643a40ed3dSBarry Smith ierr = MatView_MPIDense_Binary(mat,viewer);CHKERRQ(ierr); 76511aeaf0aSBarry Smith } 7663a40ed3dSBarry Smith PetscFunctionReturn(0); 7678965ea79SLois Curfman McInnes } 7688965ea79SLois Curfman McInnes 769dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info) 7708965ea79SLois Curfman McInnes { 7713501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 7723501a2bdSLois Curfman McInnes Mat mdn = mat->A; 773dfbe8321SBarry Smith PetscErrorCode ierr; 774329f5518SBarry Smith PetscReal isend[5],irecv[5]; 7758965ea79SLois Curfman McInnes 7763a40ed3dSBarry Smith PetscFunctionBegin; 7774e220ebcSLois Curfman McInnes info->block_size = 1.0; 7782205254eSKarl Rupp 7794e220ebcSLois Curfman McInnes ierr = MatGetInfo(mdn,MAT_LOCAL,info);CHKERRQ(ierr); 7802205254eSKarl Rupp 7814e220ebcSLois Curfman McInnes isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 7824e220ebcSLois Curfman McInnes isend[3] = info->memory; isend[4] = info->mallocs; 7838965ea79SLois Curfman McInnes if (flag == MAT_LOCAL) { 7844e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 7854e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 7864e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 7874e220ebcSLois Curfman McInnes info->memory = isend[3]; 7884e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 7898965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 790b2566f29SBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 7912205254eSKarl Rupp 7924e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7934e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7944e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7954e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7964e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7978965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 798b2566f29SBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 7992205254eSKarl Rupp 8004e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 8014e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 8024e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 8034e220ebcSLois Curfman McInnes info->memory = irecv[3]; 8044e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 8058965ea79SLois Curfman McInnes } 8064e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 8074e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 8084e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 8093a40ed3dSBarry Smith PetscFunctionReturn(0); 8108965ea79SLois Curfman McInnes } 8118965ea79SLois Curfman McInnes 812ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIDense(Mat A,MatOption op,PetscBool flg) 8138965ea79SLois Curfman McInnes { 81439ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 815dfbe8321SBarry Smith PetscErrorCode ierr; 8168965ea79SLois Curfman McInnes 8173a40ed3dSBarry Smith PetscFunctionBegin; 81812c028f9SKris Buschelman switch (op) { 819512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 82012c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 82112c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 82243674050SBarry Smith MatCheckPreallocated(A,1); 8234e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 82412c028f9SKris Buschelman break; 82512c028f9SKris Buschelman case MAT_ROW_ORIENTED: 82643674050SBarry Smith MatCheckPreallocated(A,1); 8274e0d8c25SBarry Smith a->roworiented = flg; 8284e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 82912c028f9SKris Buschelman break; 8304e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 83113fa8e87SLisandro Dalcin case MAT_KEEP_NONZERO_PATTERN: 83212c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 833290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 83412c028f9SKris Buschelman break; 83512c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 8364e0d8c25SBarry Smith a->donotstash = flg; 83712c028f9SKris Buschelman break; 83877e54ba9SKris Buschelman case MAT_SYMMETRIC: 83977e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 8409a4540c5SBarry Smith case MAT_HERMITIAN: 8419a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 842600fe468SBarry Smith case MAT_IGNORE_LOWER_TRIANGULAR: 843290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 84477e54ba9SKris Buschelman break; 84512c028f9SKris Buschelman default: 846e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %s",MatOptions[op]); 8473a40ed3dSBarry Smith } 8483a40ed3dSBarry Smith PetscFunctionReturn(0); 8498965ea79SLois Curfman McInnes } 8508965ea79SLois Curfman McInnes 8518965ea79SLois Curfman McInnes 852dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIDense(Mat A,Vec ll,Vec rr) 8535b2fa520SLois Curfman McInnes { 8545b2fa520SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 8555b2fa520SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)mdn->A->data; 856bca11509SBarry Smith const PetscScalar *l,*r; 857bca11509SBarry Smith PetscScalar x,*v; 858dfbe8321SBarry Smith PetscErrorCode ierr; 859d0f46423SBarry Smith PetscInt i,j,s2a,s3a,s2,s3,m=mdn->A->rmap->n,n=mdn->A->cmap->n; 8605b2fa520SLois Curfman McInnes 8615b2fa520SLois Curfman McInnes PetscFunctionBegin; 86272d926a5SLois Curfman McInnes ierr = MatGetLocalSize(A,&s2,&s3);CHKERRQ(ierr); 8635b2fa520SLois Curfman McInnes if (ll) { 86472d926a5SLois Curfman McInnes ierr = VecGetLocalSize(ll,&s2a);CHKERRQ(ierr); 865e32f2f54SBarry Smith if (s2a != s2) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vector non-conforming local size, %d != %d.", s2a, s2); 866bca11509SBarry Smith ierr = VecGetArrayRead(ll,&l);CHKERRQ(ierr); 8675b2fa520SLois Curfman McInnes for (i=0; i<m; i++) { 8685b2fa520SLois Curfman McInnes x = l[i]; 8695b2fa520SLois Curfman McInnes v = mat->v + i; 8705b2fa520SLois Curfman McInnes for (j=0; j<n; j++) { (*v) *= x; v+= m;} 8715b2fa520SLois Curfman McInnes } 872bca11509SBarry Smith ierr = VecRestoreArrayRead(ll,&l);CHKERRQ(ierr); 873efee365bSSatish Balay ierr = PetscLogFlops(n*m);CHKERRQ(ierr); 8745b2fa520SLois Curfman McInnes } 8755b2fa520SLois Curfman McInnes if (rr) { 876175be7b4SMatthew Knepley ierr = VecGetLocalSize(rr,&s3a);CHKERRQ(ierr); 877e32f2f54SBarry Smith if (s3a != s3) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vec non-conforming local size, %d != %d.", s3a, s3); 878ca9f406cSSatish Balay ierr = VecScatterBegin(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 879ca9f406cSSatish Balay ierr = VecScatterEnd(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 880bca11509SBarry Smith ierr = VecGetArrayRead(mdn->lvec,&r);CHKERRQ(ierr); 8815b2fa520SLois Curfman McInnes for (i=0; i<n; i++) { 8825b2fa520SLois Curfman McInnes x = r[i]; 8835b2fa520SLois Curfman McInnes v = mat->v + i*m; 8842205254eSKarl Rupp for (j=0; j<m; j++) (*v++) *= x; 8855b2fa520SLois Curfman McInnes } 886bca11509SBarry Smith ierr = VecRestoreArrayRead(mdn->lvec,&r);CHKERRQ(ierr); 887efee365bSSatish Balay ierr = PetscLogFlops(n*m);CHKERRQ(ierr); 8885b2fa520SLois Curfman McInnes } 8895b2fa520SLois Curfman McInnes PetscFunctionReturn(0); 8905b2fa520SLois Curfman McInnes } 8915b2fa520SLois Curfman McInnes 892dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIDense(Mat A,NormType type,PetscReal *nrm) 893096963f5SLois Curfman McInnes { 8943501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 8953501a2bdSLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)mdn->A->data; 896dfbe8321SBarry Smith PetscErrorCode ierr; 89713f74950SBarry Smith PetscInt i,j; 898329f5518SBarry Smith PetscReal sum = 0.0; 89987828ca2SBarry Smith PetscScalar *v = mat->v; 9003501a2bdSLois Curfman McInnes 9013a40ed3dSBarry Smith PetscFunctionBegin; 9023501a2bdSLois Curfman McInnes if (mdn->size == 1) { 903064f8208SBarry Smith ierr = MatNorm(mdn->A,type,nrm);CHKERRQ(ierr); 9043501a2bdSLois Curfman McInnes } else { 9053501a2bdSLois Curfman McInnes if (type == NORM_FROBENIUS) { 906d0f46423SBarry Smith for (i=0; i<mdn->A->cmap->n*mdn->A->rmap->n; i++) { 907329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 9083501a2bdSLois Curfman McInnes } 909b2566f29SBarry Smith ierr = MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 9108f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 911dc0b31edSSatish Balay ierr = PetscLogFlops(2.0*mdn->A->cmap->n*mdn->A->rmap->n);CHKERRQ(ierr); 9123a40ed3dSBarry Smith } else if (type == NORM_1) { 913329f5518SBarry Smith PetscReal *tmp,*tmp2; 914dcca6d9dSJed Brown ierr = PetscMalloc2(A->cmap->N,&tmp,A->cmap->N,&tmp2);CHKERRQ(ierr); 91574ed9c26SBarry Smith ierr = PetscMemzero(tmp,A->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 91674ed9c26SBarry Smith ierr = PetscMemzero(tmp2,A->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 917064f8208SBarry Smith *nrm = 0.0; 9183501a2bdSLois Curfman McInnes v = mat->v; 919d0f46423SBarry Smith for (j=0; j<mdn->A->cmap->n; j++) { 920d0f46423SBarry Smith for (i=0; i<mdn->A->rmap->n; i++) { 92167e560aaSBarry Smith tmp[j] += PetscAbsScalar(*v); v++; 9223501a2bdSLois Curfman McInnes } 9233501a2bdSLois Curfman McInnes } 924b2566f29SBarry Smith ierr = MPIU_Allreduce(tmp,tmp2,A->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 925d0f46423SBarry Smith for (j=0; j<A->cmap->N; j++) { 926064f8208SBarry Smith if (tmp2[j] > *nrm) *nrm = tmp2[j]; 9273501a2bdSLois Curfman McInnes } 9288627564fSBarry Smith ierr = PetscFree2(tmp,tmp2);CHKERRQ(ierr); 929d0f46423SBarry Smith ierr = PetscLogFlops(A->cmap->n*A->rmap->n);CHKERRQ(ierr); 9303a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 931329f5518SBarry Smith PetscReal ntemp; 9323501a2bdSLois Curfman McInnes ierr = MatNorm(mdn->A,type,&ntemp);CHKERRQ(ierr); 933b2566f29SBarry Smith ierr = MPIU_Allreduce(&ntemp,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 934ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"No support for two norm"); 9353501a2bdSLois Curfman McInnes } 9363a40ed3dSBarry Smith PetscFunctionReturn(0); 9373501a2bdSLois Curfman McInnes } 9383501a2bdSLois Curfman McInnes 939fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIDense(Mat A,MatReuse reuse,Mat *matout) 9403501a2bdSLois Curfman McInnes { 9413501a2bdSLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 9423501a2bdSLois Curfman McInnes Mat_SeqDense *Aloc = (Mat_SeqDense*)a->A->data; 9433501a2bdSLois Curfman McInnes Mat B; 944d0f46423SBarry Smith PetscInt M = A->rmap->N,N = A->cmap->N,m,n,*rwork,rstart = A->rmap->rstart; 9456849ba73SBarry Smith PetscErrorCode ierr; 94613f74950SBarry Smith PetscInt j,i; 94787828ca2SBarry Smith PetscScalar *v; 9483501a2bdSLois Curfman McInnes 9493a40ed3dSBarry Smith PetscFunctionBegin; 950cf37664fSBarry Smith if (reuse == MAT_INPLACE_MATRIX && M != N) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Supports square matrix only in-place"); 951cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 952ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 953d0f46423SBarry Smith ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr); 9547adad957SLisandro Dalcin ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr); 9550298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(B,NULL);CHKERRQ(ierr); 956fc4dec0aSBarry Smith } else { 957fc4dec0aSBarry Smith B = *matout; 958fc4dec0aSBarry Smith } 9593501a2bdSLois Curfman McInnes 960d0f46423SBarry Smith m = a->A->rmap->n; n = a->A->cmap->n; v = Aloc->v; 961785e854fSJed Brown ierr = PetscMalloc1(m,&rwork);CHKERRQ(ierr); 9623501a2bdSLois Curfman McInnes for (i=0; i<m; i++) rwork[i] = rstart + i; 9631acff37aSSatish Balay for (j=0; j<n; j++) { 9643501a2bdSLois Curfman McInnes ierr = MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES);CHKERRQ(ierr); 9653501a2bdSLois Curfman McInnes v += m; 9663501a2bdSLois Curfman McInnes } 967606d414cSSatish Balay ierr = PetscFree(rwork);CHKERRQ(ierr); 9686d4a8577SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 9696d4a8577SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 970cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) { 9713501a2bdSLois Curfman McInnes *matout = B; 9723501a2bdSLois Curfman McInnes } else { 97328be2f97SBarry Smith ierr = MatHeaderMerge(A,&B);CHKERRQ(ierr); 9743501a2bdSLois Curfman McInnes } 9753a40ed3dSBarry Smith PetscFunctionReturn(0); 976096963f5SLois Curfman McInnes } 977096963f5SLois Curfman McInnes 97844cd7ae7SLois Curfman McInnes 9796849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat*); 980d84338a6SBarry Smith extern PetscErrorCode MatScale_MPIDense(Mat,PetscScalar); 9818965ea79SLois Curfman McInnes 9824994cf47SJed Brown PetscErrorCode MatSetUp_MPIDense(Mat A) 983273d9f13SBarry Smith { 984dfbe8321SBarry Smith PetscErrorCode ierr; 985273d9f13SBarry Smith 986273d9f13SBarry Smith PetscFunctionBegin; 987273d9f13SBarry Smith ierr = MatMPIDenseSetPreallocation(A,0);CHKERRQ(ierr); 988273d9f13SBarry Smith PetscFunctionReturn(0); 989273d9f13SBarry Smith } 990273d9f13SBarry Smith 991488007eeSBarry Smith PetscErrorCode MatAXPY_MPIDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str) 992488007eeSBarry Smith { 993488007eeSBarry Smith PetscErrorCode ierr; 994488007eeSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)Y->data, *B = (Mat_MPIDense*)X->data; 995488007eeSBarry Smith 996488007eeSBarry Smith PetscFunctionBegin; 997488007eeSBarry Smith ierr = MatAXPY(A->A,alpha,B->A,str);CHKERRQ(ierr); 998a3fa217bSJose E. Roman ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr); 999488007eeSBarry Smith PetscFunctionReturn(0); 1000488007eeSBarry Smith } 1001488007eeSBarry Smith 10027087cfbeSBarry Smith PetscErrorCode MatConjugate_MPIDense(Mat mat) 1003ba337c44SJed Brown { 1004ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)mat->data; 1005ba337c44SJed Brown PetscErrorCode ierr; 1006ba337c44SJed Brown 1007ba337c44SJed Brown PetscFunctionBegin; 1008ba337c44SJed Brown ierr = MatConjugate(a->A);CHKERRQ(ierr); 1009ba337c44SJed Brown PetscFunctionReturn(0); 1010ba337c44SJed Brown } 1011ba337c44SJed Brown 1012ba337c44SJed Brown PetscErrorCode MatRealPart_MPIDense(Mat A) 1013ba337c44SJed Brown { 1014ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1015ba337c44SJed Brown PetscErrorCode ierr; 1016ba337c44SJed Brown 1017ba337c44SJed Brown PetscFunctionBegin; 1018ba337c44SJed Brown ierr = MatRealPart(a->A);CHKERRQ(ierr); 1019ba337c44SJed Brown PetscFunctionReturn(0); 1020ba337c44SJed Brown } 1021ba337c44SJed Brown 1022ba337c44SJed Brown PetscErrorCode MatImaginaryPart_MPIDense(Mat A) 1023ba337c44SJed Brown { 1024ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1025ba337c44SJed Brown PetscErrorCode ierr; 1026ba337c44SJed Brown 1027ba337c44SJed Brown PetscFunctionBegin; 1028ba337c44SJed Brown ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 1029ba337c44SJed Brown PetscFunctionReturn(0); 1030ba337c44SJed Brown } 1031ba337c44SJed Brown 10320716a85fSBarry Smith extern PetscErrorCode MatGetColumnNorms_SeqDense(Mat,NormType,PetscReal*); 10330716a85fSBarry Smith PetscErrorCode MatGetColumnNorms_MPIDense(Mat A,NormType type,PetscReal *norms) 10340716a85fSBarry Smith { 10350716a85fSBarry Smith PetscErrorCode ierr; 10360716a85fSBarry Smith PetscInt i,n; 10370716a85fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*) A->data; 10380716a85fSBarry Smith PetscReal *work; 10390716a85fSBarry Smith 10400716a85fSBarry Smith PetscFunctionBegin; 10410298fd71SBarry Smith ierr = MatGetSize(A,NULL,&n);CHKERRQ(ierr); 1042785e854fSJed Brown ierr = PetscMalloc1(n,&work);CHKERRQ(ierr); 10430716a85fSBarry Smith ierr = MatGetColumnNorms_SeqDense(a->A,type,work);CHKERRQ(ierr); 10440716a85fSBarry Smith if (type == NORM_2) { 10450716a85fSBarry Smith for (i=0; i<n; i++) work[i] *= work[i]; 10460716a85fSBarry Smith } 10470716a85fSBarry Smith if (type == NORM_INFINITY) { 1048b2566f29SBarry Smith ierr = MPIU_Allreduce(work,norms,n,MPIU_REAL,MPIU_MAX,A->hdr.comm);CHKERRQ(ierr); 10490716a85fSBarry Smith } else { 1050b2566f29SBarry Smith ierr = MPIU_Allreduce(work,norms,n,MPIU_REAL,MPIU_SUM,A->hdr.comm);CHKERRQ(ierr); 10510716a85fSBarry Smith } 10520716a85fSBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 10530716a85fSBarry Smith if (type == NORM_2) { 10548f1a2a5eSBarry Smith for (i=0; i<n; i++) norms[i] = PetscSqrtReal(norms[i]); 10550716a85fSBarry Smith } 10560716a85fSBarry Smith PetscFunctionReturn(0); 10570716a85fSBarry Smith } 10580716a85fSBarry Smith 105973a71a0fSBarry Smith static PetscErrorCode MatSetRandom_MPIDense(Mat x,PetscRandom rctx) 106073a71a0fSBarry Smith { 106173a71a0fSBarry Smith Mat_MPIDense *d = (Mat_MPIDense*)x->data; 106273a71a0fSBarry Smith PetscErrorCode ierr; 106373a71a0fSBarry Smith PetscScalar *a; 106473a71a0fSBarry Smith PetscInt m,n,i; 106573a71a0fSBarry Smith 106673a71a0fSBarry Smith PetscFunctionBegin; 106773a71a0fSBarry Smith ierr = MatGetSize(d->A,&m,&n);CHKERRQ(ierr); 10688c778c55SBarry Smith ierr = MatDenseGetArray(d->A,&a);CHKERRQ(ierr); 106973a71a0fSBarry Smith for (i=0; i<m*n; i++) { 107073a71a0fSBarry Smith ierr = PetscRandomGetValue(rctx,a+i);CHKERRQ(ierr); 107173a71a0fSBarry Smith } 10728c778c55SBarry Smith ierr = MatDenseRestoreArray(d->A,&a);CHKERRQ(ierr); 107373a71a0fSBarry Smith PetscFunctionReturn(0); 107473a71a0fSBarry Smith } 107573a71a0fSBarry Smith 1076fd4e9aacSBarry Smith extern PetscErrorCode MatMatMultNumeric_MPIDense(Mat A,Mat,Mat); 1077fd4e9aacSBarry Smith 10783b49f96aSBarry Smith static PetscErrorCode MatMissingDiagonal_MPIDense(Mat A,PetscBool *missing,PetscInt *d) 10793b49f96aSBarry Smith { 10803b49f96aSBarry Smith PetscFunctionBegin; 10813b49f96aSBarry Smith *missing = PETSC_FALSE; 10823b49f96aSBarry Smith PetscFunctionReturn(0); 10833b49f96aSBarry Smith } 10843b49f96aSBarry Smith 10858965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/ 108609dc0095SBarry Smith static struct _MatOps MatOps_Values = { MatSetValues_MPIDense, 108709dc0095SBarry Smith MatGetRow_MPIDense, 108809dc0095SBarry Smith MatRestoreRow_MPIDense, 108909dc0095SBarry Smith MatMult_MPIDense, 109097304618SKris Buschelman /* 4*/ MatMultAdd_MPIDense, 10917c922b88SBarry Smith MatMultTranspose_MPIDense, 10927c922b88SBarry Smith MatMultTransposeAdd_MPIDense, 10938965ea79SLois Curfman McInnes 0, 109409dc0095SBarry Smith 0, 109509dc0095SBarry Smith 0, 109697304618SKris Buschelman /* 10*/ 0, 109709dc0095SBarry Smith 0, 109809dc0095SBarry Smith 0, 109909dc0095SBarry Smith 0, 110009dc0095SBarry Smith MatTranspose_MPIDense, 110197304618SKris Buschelman /* 15*/ MatGetInfo_MPIDense, 11026e4ee0c6SHong Zhang MatEqual_MPIDense, 110309dc0095SBarry Smith MatGetDiagonal_MPIDense, 11045b2fa520SLois Curfman McInnes MatDiagonalScale_MPIDense, 110509dc0095SBarry Smith MatNorm_MPIDense, 110697304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPIDense, 110709dc0095SBarry Smith MatAssemblyEnd_MPIDense, 110809dc0095SBarry Smith MatSetOption_MPIDense, 110909dc0095SBarry Smith MatZeroEntries_MPIDense, 1110d519adbfSMatthew Knepley /* 24*/ MatZeroRows_MPIDense, 1111919b68f7SBarry Smith 0, 111201b82886SBarry Smith 0, 111301b82886SBarry Smith 0, 111401b82886SBarry Smith 0, 11154994cf47SJed Brown /* 29*/ MatSetUp_MPIDense, 1116273d9f13SBarry Smith 0, 111709dc0095SBarry Smith 0, 1118c56a70eeSBarry Smith MatGetDiagonalBlock_MPIDense, 11198c778c55SBarry Smith 0, 1120d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPIDense, 112109dc0095SBarry Smith 0, 112209dc0095SBarry Smith 0, 112309dc0095SBarry Smith 0, 112409dc0095SBarry Smith 0, 1125d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPIDense, 11267dae84e0SHong Zhang MatCreateSubMatrices_MPIDense, 112709dc0095SBarry Smith 0, 112809dc0095SBarry Smith MatGetValues_MPIDense, 112909dc0095SBarry Smith 0, 1130d519adbfSMatthew Knepley /* 44*/ 0, 113109dc0095SBarry Smith MatScale_MPIDense, 11327d68702bSBarry Smith MatShift_Basic, 113309dc0095SBarry Smith 0, 113409dc0095SBarry Smith 0, 113573a71a0fSBarry Smith /* 49*/ MatSetRandom_MPIDense, 113609dc0095SBarry Smith 0, 113709dc0095SBarry Smith 0, 113809dc0095SBarry Smith 0, 113909dc0095SBarry Smith 0, 1140d519adbfSMatthew Knepley /* 54*/ 0, 114109dc0095SBarry Smith 0, 114209dc0095SBarry Smith 0, 114309dc0095SBarry Smith 0, 114409dc0095SBarry Smith 0, 11457dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPIDense, 1146b9b97703SBarry Smith MatDestroy_MPIDense, 1147b9b97703SBarry Smith MatView_MPIDense, 1148357abbc8SBarry Smith 0, 114997304618SKris Buschelman 0, 1150d519adbfSMatthew Knepley /* 64*/ 0, 115197304618SKris Buschelman 0, 115297304618SKris Buschelman 0, 115397304618SKris Buschelman 0, 115497304618SKris Buschelman 0, 1155d519adbfSMatthew Knepley /* 69*/ 0, 115697304618SKris Buschelman 0, 115797304618SKris Buschelman 0, 115897304618SKris Buschelman 0, 115997304618SKris Buschelman 0, 1160d519adbfSMatthew Knepley /* 74*/ 0, 116197304618SKris Buschelman 0, 116297304618SKris Buschelman 0, 116397304618SKris Buschelman 0, 116497304618SKris Buschelman 0, 1165d519adbfSMatthew Knepley /* 79*/ 0, 116697304618SKris Buschelman 0, 116797304618SKris Buschelman 0, 116897304618SKris Buschelman 0, 11695bba2384SShri Abhyankar /* 83*/ MatLoad_MPIDense, 1170865e5f61SKris Buschelman 0, 1171865e5f61SKris Buschelman 0, 1172865e5f61SKris Buschelman 0, 1173865e5f61SKris Buschelman 0, 1174865e5f61SKris Buschelman 0, 11759775878aSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 1176320f2790SHong Zhang /* 89*/ MatMatMult_MPIDense_MPIDense, 1177320f2790SHong Zhang MatMatMultSymbolic_MPIDense_MPIDense, 11789775878aSHong Zhang #else 11799775878aSHong Zhang /* 89*/ 0, 1180865e5f61SKris Buschelman 0, 11819775878aSHong Zhang #endif 1182fd4e9aacSBarry Smith MatMatMultNumeric_MPIDense, 11832fbe02b9SBarry Smith 0, 1184ba337c44SJed Brown 0, 1185d519adbfSMatthew Knepley /* 94*/ 0, 1186865e5f61SKris Buschelman 0, 1187865e5f61SKris Buschelman 0, 1188ba337c44SJed Brown 0, 1189ba337c44SJed Brown 0, 1190ba337c44SJed Brown /* 99*/ 0, 1191ba337c44SJed Brown 0, 1192ba337c44SJed Brown 0, 1193ba337c44SJed Brown MatConjugate_MPIDense, 1194ba337c44SJed Brown 0, 1195ba337c44SJed Brown /*104*/ 0, 1196ba337c44SJed Brown MatRealPart_MPIDense, 1197ba337c44SJed Brown MatImaginaryPart_MPIDense, 119886d161a7SShri Abhyankar 0, 119986d161a7SShri Abhyankar 0, 120086d161a7SShri Abhyankar /*109*/ 0, 120186d161a7SShri Abhyankar 0, 120286d161a7SShri Abhyankar 0, 120386d161a7SShri Abhyankar 0, 12043b49f96aSBarry Smith MatMissingDiagonal_MPIDense, 120586d161a7SShri Abhyankar /*114*/ 0, 120686d161a7SShri Abhyankar 0, 120786d161a7SShri Abhyankar 0, 120886d161a7SShri Abhyankar 0, 120986d161a7SShri Abhyankar 0, 121086d161a7SShri Abhyankar /*119*/ 0, 121186d161a7SShri Abhyankar 0, 121286d161a7SShri Abhyankar 0, 12130716a85fSBarry Smith 0, 12140716a85fSBarry Smith 0, 12150716a85fSBarry Smith /*124*/ 0, 12163964eb88SJed Brown MatGetColumnNorms_MPIDense, 12173964eb88SJed Brown 0, 12183964eb88SJed Brown 0, 12193964eb88SJed Brown 0, 12203964eb88SJed Brown /*129*/ 0, 1221cb20be35SHong Zhang MatTransposeMatMult_MPIDense_MPIDense, 1222cb20be35SHong Zhang MatTransposeMatMultSymbolic_MPIDense_MPIDense, 1223cb20be35SHong Zhang MatTransposeMatMultNumeric_MPIDense_MPIDense, 12243964eb88SJed Brown 0, 12253964eb88SJed Brown /*134*/ 0, 12263964eb88SJed Brown 0, 12273964eb88SJed Brown 0, 12283964eb88SJed Brown 0, 12293964eb88SJed Brown 0, 12303964eb88SJed Brown /*139*/ 0, 1231f9426fe0SMark Adams 0, 12323964eb88SJed Brown 0 1233ba337c44SJed Brown }; 12348965ea79SLois Curfman McInnes 12357087cfbeSBarry Smith PetscErrorCode MatMPIDenseSetPreallocation_MPIDense(Mat mat,PetscScalar *data) 1236a23d5eceSKris Buschelman { 1237a23d5eceSKris Buschelman Mat_MPIDense *a; 1238dfbe8321SBarry Smith PetscErrorCode ierr; 1239a23d5eceSKris Buschelman 1240a23d5eceSKris Buschelman PetscFunctionBegin; 1241a23d5eceSKris Buschelman mat->preallocated = PETSC_TRUE; 1242a23d5eceSKris Buschelman /* Note: For now, when data is specified above, this assumes the user correctly 1243a23d5eceSKris Buschelman allocates the local dense storage space. We should add error checking. */ 1244a23d5eceSKris Buschelman 1245a23d5eceSKris Buschelman a = (Mat_MPIDense*)mat->data; 124634ef9618SShri Abhyankar ierr = PetscLayoutSetUp(mat->rmap);CHKERRQ(ierr); 124734ef9618SShri Abhyankar ierr = PetscLayoutSetUp(mat->cmap);CHKERRQ(ierr); 124834ef9618SShri Abhyankar a->nvec = mat->cmap->n; 124934ef9618SShri Abhyankar 1250f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&a->A);CHKERRQ(ierr); 1251d0f46423SBarry Smith ierr = MatSetSizes(a->A,mat->rmap->n,mat->cmap->N,mat->rmap->n,mat->cmap->N);CHKERRQ(ierr); 12525c5985e7SKris Buschelman ierr = MatSetType(a->A,MATSEQDENSE);CHKERRQ(ierr); 12535c5985e7SKris Buschelman ierr = MatSeqDenseSetPreallocation(a->A,data);CHKERRQ(ierr); 12543bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 1255a23d5eceSKris Buschelman PetscFunctionReturn(0); 1256a23d5eceSKris Buschelman } 1257a23d5eceSKris Buschelman 125865b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 1259cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIDense_Elemental(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 12608baccfbdSHong Zhang { 12618ea901baSHong Zhang Mat mat_elemental; 12628ea901baSHong Zhang PetscErrorCode ierr; 126332d7a744SHong Zhang PetscScalar *v; 126432d7a744SHong Zhang PetscInt m=A->rmap->n,N=A->cmap->N,rstart=A->rmap->rstart,i,*rows,*cols; 12658ea901baSHong Zhang 12668baccfbdSHong Zhang PetscFunctionBegin; 1267378336b6SHong Zhang if (reuse == MAT_REUSE_MATRIX) { 1268378336b6SHong Zhang mat_elemental = *newmat; 1269378336b6SHong Zhang ierr = MatZeroEntries(*newmat);CHKERRQ(ierr); 1270378336b6SHong Zhang } else { 1271378336b6SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental);CHKERRQ(ierr); 1272378336b6SHong Zhang ierr = MatSetSizes(mat_elemental,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 1273378336b6SHong Zhang ierr = MatSetType(mat_elemental,MATELEMENTAL);CHKERRQ(ierr); 1274378336b6SHong Zhang ierr = MatSetUp(mat_elemental);CHKERRQ(ierr); 127532d7a744SHong Zhang ierr = MatSetOption(mat_elemental,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 1276378336b6SHong Zhang } 1277378336b6SHong Zhang 127832d7a744SHong Zhang ierr = PetscMalloc2(m,&rows,N,&cols);CHKERRQ(ierr); 127932d7a744SHong Zhang for (i=0; i<N; i++) cols[i] = i; 128032d7a744SHong Zhang for (i=0; i<m; i++) rows[i] = rstart + i; 12818ea901baSHong Zhang 12828ea901baSHong Zhang /* PETSc-Elemental interaface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */ 128332d7a744SHong Zhang ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr); 128432d7a744SHong Zhang ierr = MatSetValues(mat_elemental,m,rows,N,cols,v,ADD_VALUES);CHKERRQ(ierr); 12858ea901baSHong Zhang ierr = MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 12868ea901baSHong Zhang ierr = MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 128732d7a744SHong Zhang ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr); 128832d7a744SHong Zhang ierr = PetscFree2(rows,cols);CHKERRQ(ierr); 12898ea901baSHong Zhang 1290511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 129128be2f97SBarry Smith ierr = MatHeaderReplace(A,&mat_elemental);CHKERRQ(ierr); 12928ea901baSHong Zhang } else { 12938ea901baSHong Zhang *newmat = mat_elemental; 12948ea901baSHong Zhang } 12958baccfbdSHong Zhang PetscFunctionReturn(0); 12968baccfbdSHong Zhang } 129765b80a83SHong Zhang #endif 12988baccfbdSHong Zhang 12998cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIDense(Mat mat) 1300273d9f13SBarry Smith { 1301273d9f13SBarry Smith Mat_MPIDense *a; 1302dfbe8321SBarry Smith PetscErrorCode ierr; 1303273d9f13SBarry Smith 1304273d9f13SBarry Smith PetscFunctionBegin; 1305b00a9115SJed Brown ierr = PetscNewLog(mat,&a);CHKERRQ(ierr); 1306b0a32e0cSBarry Smith mat->data = (void*)a; 1307273d9f13SBarry Smith ierr = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1308273d9f13SBarry Smith 1309273d9f13SBarry Smith mat->insertmode = NOT_SET_VALUES; 1310ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&a->rank);CHKERRQ(ierr); 1311ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&a->size);CHKERRQ(ierr); 1312273d9f13SBarry Smith 1313273d9f13SBarry Smith /* build cache for off array entries formed */ 1314273d9f13SBarry Smith a->donotstash = PETSC_FALSE; 13152205254eSKarl Rupp 1316ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)mat),1,&mat->stash);CHKERRQ(ierr); 1317273d9f13SBarry Smith 1318273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 1319273d9f13SBarry Smith a->lvec = 0; 1320273d9f13SBarry Smith a->Mvctx = 0; 1321273d9f13SBarry Smith a->roworiented = PETSC_TRUE; 1322273d9f13SBarry Smith 1323bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",MatDenseGetArray_MPIDense);CHKERRQ(ierr); 1324*8572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",MatDenseRestoreArray_MPIDense);CHKERRQ(ierr); 1325*8572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",MatDenseGetArrayRead_MPIDense);CHKERRQ(ierr); 1326*8572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",MatDenseRestoreArrayRead_MPIDense);CHKERRQ(ierr); 1327d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",MatDensePlaceArray_MPIDense);CHKERRQ(ierr); 1328d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",MatDenseResetArray_MPIDense);CHKERRQ(ierr); 13298baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 13308baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",MatConvert_MPIDense_Elemental);CHKERRQ(ierr); 13318baccfbdSHong Zhang #endif 1332bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",MatMPIDenseSetPreallocation_MPIDense);CHKERRQ(ierr); 1333bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMult_mpiaij_mpidense_C",MatMatMult_MPIAIJ_MPIDense);CHKERRQ(ierr); 1334bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C",MatMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr); 1335bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C",MatMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr); 13368949adfdSHong Zhang 13378949adfdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMult_mpiaij_mpidense_C",MatTransposeMatMult_MPIAIJ_MPIDense);CHKERRQ(ierr); 13388949adfdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultSymbolic_mpiaij_mpidense_C",MatTransposeMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr); 13398949adfdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultNumeric_mpiaij_mpidense_C",MatTransposeMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr); 134038aed534SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)mat,MATMPIDENSE);CHKERRQ(ierr); 1341273d9f13SBarry Smith PetscFunctionReturn(0); 1342273d9f13SBarry Smith } 1343273d9f13SBarry Smith 1344209238afSKris Buschelman /*MC 1345002d173eSKris Buschelman MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices. 1346209238afSKris Buschelman 1347209238afSKris Buschelman This matrix type is identical to MATSEQDENSE when constructed with a single process communicator, 1348209238afSKris Buschelman and MATMPIDENSE otherwise. 1349209238afSKris Buschelman 1350209238afSKris Buschelman Options Database Keys: 1351209238afSKris Buschelman . -mat_type dense - sets the matrix type to "dense" during a call to MatSetFromOptions() 1352209238afSKris Buschelman 1353209238afSKris Buschelman Level: beginner 1354209238afSKris Buschelman 135501b82886SBarry Smith 1356209238afSKris Buschelman .seealso: MatCreateMPIDense,MATSEQDENSE,MATMPIDENSE 1357209238afSKris Buschelman M*/ 1358209238afSKris Buschelman 1359273d9f13SBarry Smith /*@C 1360273d9f13SBarry Smith MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries 1361273d9f13SBarry Smith 1362273d9f13SBarry Smith Not collective 1363273d9f13SBarry Smith 1364273d9f13SBarry Smith Input Parameters: 13651c4f3114SJed Brown . B - the matrix 13660298fd71SBarry Smith - data - optional location of matrix data. Set data=NULL for PETSc 1367273d9f13SBarry Smith to control all matrix memory allocation. 1368273d9f13SBarry Smith 1369273d9f13SBarry Smith Notes: 1370273d9f13SBarry Smith The dense format is fully compatible with standard Fortran 77 1371273d9f13SBarry Smith storage by columns. 1372273d9f13SBarry Smith 1373273d9f13SBarry Smith The data input variable is intended primarily for Fortran programmers 1374273d9f13SBarry Smith who wish to allocate their own matrix memory space. Most users should 13750298fd71SBarry Smith set data=NULL. 1376273d9f13SBarry Smith 1377273d9f13SBarry Smith Level: intermediate 1378273d9f13SBarry Smith 1379273d9f13SBarry Smith .keywords: matrix,dense, parallel 1380273d9f13SBarry Smith 1381273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 1382273d9f13SBarry Smith @*/ 13831c4f3114SJed Brown PetscErrorCode MatMPIDenseSetPreallocation(Mat B,PetscScalar *data) 1384273d9f13SBarry Smith { 13854ac538c5SBarry Smith PetscErrorCode ierr; 1386273d9f13SBarry Smith 1387273d9f13SBarry Smith PetscFunctionBegin; 13881c4f3114SJed Brown ierr = PetscTryMethod(B,"MatMPIDenseSetPreallocation_C",(Mat,PetscScalar*),(B,data));CHKERRQ(ierr); 1389273d9f13SBarry Smith PetscFunctionReturn(0); 1390273d9f13SBarry Smith } 1391273d9f13SBarry Smith 1392d3042a70SBarry Smith /*@ 1393d3042a70SBarry Smith MatDensePlaceArray - Allows one to replace the array in a dense array with an 1394d3042a70SBarry Smith array provided by the user. This is useful to avoid copying an array 1395d3042a70SBarry Smith into a matrix 1396d3042a70SBarry Smith 1397d3042a70SBarry Smith Not Collective 1398d3042a70SBarry Smith 1399d3042a70SBarry Smith Input Parameters: 1400d3042a70SBarry Smith + mat - the matrix 1401d3042a70SBarry Smith - array - the array in column major order 1402d3042a70SBarry Smith 1403d3042a70SBarry Smith Notes: 1404d3042a70SBarry Smith You can return to the original array with a call to MatDenseResetArray(). The user is responsible for freeing this array; it will not be 1405d3042a70SBarry Smith freed when the matrix is destroyed. 1406d3042a70SBarry Smith 1407d3042a70SBarry Smith Level: developer 1408d3042a70SBarry Smith 1409d3042a70SBarry Smith .seealso: MatDenseGetArray(), MatDenseResetArray(), VecPlaceArray(), VecGetArray(), VecRestoreArray(), VecReplaceArray(), VecResetArray() 1410d3042a70SBarry Smith 1411d3042a70SBarry Smith @*/ 1412d3042a70SBarry Smith PetscErrorCode MatDensePlaceArray(Mat mat,const PetscScalar array[]) 1413d3042a70SBarry Smith { 1414d3042a70SBarry Smith PetscErrorCode ierr; 1415d3042a70SBarry Smith PetscFunctionBegin; 1416d3042a70SBarry Smith ierr = PetscUseMethod(mat,"MatDensePlaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr); 1417d3042a70SBarry Smith ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 1418d3042a70SBarry Smith PetscFunctionReturn(0); 1419d3042a70SBarry Smith } 1420d3042a70SBarry Smith 1421d3042a70SBarry Smith /*@ 1422d3042a70SBarry Smith MatDenseResetArray - Resets the matrix array to that it previously had before the call to MatDensePlaceArray() 1423d3042a70SBarry Smith 1424d3042a70SBarry Smith Not Collective 1425d3042a70SBarry Smith 1426d3042a70SBarry Smith Input Parameters: 1427d3042a70SBarry Smith . mat - the matrix 1428d3042a70SBarry Smith 1429d3042a70SBarry Smith Notes: 1430d3042a70SBarry Smith You can only call this after a call to MatDensePlaceArray() 1431d3042a70SBarry Smith 1432d3042a70SBarry Smith Level: developer 1433d3042a70SBarry Smith 1434d3042a70SBarry Smith .seealso: MatDenseGetArray(), MatDensePlaceArray(), VecPlaceArray(), VecGetArray(), VecRestoreArray(), VecReplaceArray(), VecResetArray() 1435d3042a70SBarry Smith 1436d3042a70SBarry Smith @*/ 1437d3042a70SBarry Smith PetscErrorCode MatDenseResetArray(Mat mat) 1438d3042a70SBarry Smith { 1439d3042a70SBarry Smith PetscErrorCode ierr; 1440d3042a70SBarry Smith PetscFunctionBegin; 1441d3042a70SBarry Smith ierr = PetscUseMethod(mat,"MatDenseResetArray_C",(Mat),(mat));CHKERRQ(ierr); 1442d3042a70SBarry Smith ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 1443d3042a70SBarry Smith PetscFunctionReturn(0); 1444d3042a70SBarry Smith } 1445d3042a70SBarry Smith 14468965ea79SLois Curfman McInnes /*@C 144769b1f4b7SBarry Smith MatCreateDense - Creates a parallel matrix in dense format. 14488965ea79SLois Curfman McInnes 1449db81eaa0SLois Curfman McInnes Collective on MPI_Comm 1450db81eaa0SLois Curfman McInnes 14518965ea79SLois Curfman McInnes Input Parameters: 1452db81eaa0SLois Curfman McInnes + comm - MPI communicator 14538965ea79SLois Curfman McInnes . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1454db81eaa0SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 14558965ea79SLois Curfman McInnes . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 1456db81eaa0SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 14576cfe35ddSJose E. Roman - data - optional location of matrix data. Set data=NULL (PETSC_NULL_SCALAR for Fortran users) for PETSc 1458dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 14598965ea79SLois Curfman McInnes 14608965ea79SLois Curfman McInnes Output Parameter: 1461477f1c0bSLois Curfman McInnes . A - the matrix 14628965ea79SLois Curfman McInnes 1463b259b22eSLois Curfman McInnes Notes: 146439ddd567SLois Curfman McInnes The dense format is fully compatible with standard Fortran 77 146539ddd567SLois Curfman McInnes storage by columns. 14668965ea79SLois Curfman McInnes 146718f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 146818f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 14696cfe35ddSJose E. Roman set data=NULL (PETSC_NULL_SCALAR for Fortran users). 147018f449edSLois Curfman McInnes 14718965ea79SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 14728965ea79SLois Curfman McInnes (possibly both). 14738965ea79SLois Curfman McInnes 1474027ccd11SLois Curfman McInnes Level: intermediate 1475027ccd11SLois Curfman McInnes 147639ddd567SLois Curfman McInnes .keywords: matrix,dense, parallel 14778965ea79SLois Curfman McInnes 147839ddd567SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 14798965ea79SLois Curfman McInnes @*/ 148069b1f4b7SBarry Smith PetscErrorCode MatCreateDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 14818965ea79SLois Curfman McInnes { 14826849ba73SBarry Smith PetscErrorCode ierr; 148313f74950SBarry Smith PetscMPIInt size; 14848965ea79SLois Curfman McInnes 14853a40ed3dSBarry Smith PetscFunctionBegin; 1486f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 1487f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 1488273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1489273d9f13SBarry Smith if (size > 1) { 1490273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIDENSE);CHKERRQ(ierr); 1491273d9f13SBarry Smith ierr = MatMPIDenseSetPreallocation(*A,data);CHKERRQ(ierr); 14926cfe35ddSJose E. Roman if (data) { /* user provided data array, so no need to assemble */ 14936cfe35ddSJose E. Roman ierr = MatSetUpMultiply_MPIDense(*A);CHKERRQ(ierr); 14946cfe35ddSJose E. Roman (*A)->assembled = PETSC_TRUE; 14956cfe35ddSJose E. Roman } 1496273d9f13SBarry Smith } else { 1497273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr); 1498273d9f13SBarry Smith ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr); 14998c469469SLois Curfman McInnes } 15003a40ed3dSBarry Smith PetscFunctionReturn(0); 15018965ea79SLois Curfman McInnes } 15028965ea79SLois Curfman McInnes 15036849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat) 15048965ea79SLois Curfman McInnes { 15058965ea79SLois Curfman McInnes Mat mat; 15063501a2bdSLois Curfman McInnes Mat_MPIDense *a,*oldmat = (Mat_MPIDense*)A->data; 1507dfbe8321SBarry Smith PetscErrorCode ierr; 15088965ea79SLois Curfman McInnes 15093a40ed3dSBarry Smith PetscFunctionBegin; 15108965ea79SLois Curfman McInnes *newmat = 0; 1511ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&mat);CHKERRQ(ierr); 1512d0f46423SBarry Smith ierr = MatSetSizes(mat,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 15137adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)A)->type_name);CHKERRQ(ierr); 1514834f8fabSBarry Smith a = (Mat_MPIDense*)mat->data; 1515e04c1aa4SHong Zhang ierr = PetscMemcpy(mat->ops,A->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 15165aa7edbeSHong Zhang 1517d5f3da31SBarry Smith mat->factortype = A->factortype; 1518c456f294SBarry Smith mat->assembled = PETSC_TRUE; 1519273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 15208965ea79SLois Curfman McInnes 15218965ea79SLois Curfman McInnes a->size = oldmat->size; 15228965ea79SLois Curfman McInnes a->rank = oldmat->rank; 1523e0fa3b82SLois Curfman McInnes mat->insertmode = NOT_SET_VALUES; 1524b9b97703SBarry Smith a->nvec = oldmat->nvec; 15253782ba37SSatish Balay a->donotstash = oldmat->donotstash; 1526e04c1aa4SHong Zhang 15271e1e43feSBarry Smith ierr = PetscLayoutReference(A->rmap,&mat->rmap);CHKERRQ(ierr); 15281e1e43feSBarry Smith ierr = PetscLayoutReference(A->cmap,&mat->cmap);CHKERRQ(ierr); 15298965ea79SLois Curfman McInnes 1530329f5518SBarry Smith ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 15315609ef8eSBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 15323bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 153301b82886SBarry Smith 15348965ea79SLois Curfman McInnes *newmat = mat; 15353a40ed3dSBarry Smith PetscFunctionReturn(0); 15368965ea79SLois Curfman McInnes } 15378965ea79SLois Curfman McInnes 15389d36ed5fSBarry Smith PetscErrorCode MatLoad_MPIDense_DenseInFile(MPI_Comm comm,PetscInt fd,PetscInt M,PetscInt N,Mat newmat) 153986d161a7SShri Abhyankar { 154086d161a7SShri Abhyankar PetscErrorCode ierr; 154186d161a7SShri Abhyankar PetscMPIInt rank,size; 154274c13d95SBarry Smith const PetscInt *rowners; 154374c13d95SBarry Smith PetscInt i,m,n,nz,j,mMax; 154486d161a7SShri Abhyankar PetscScalar *array,*vals,*vals_ptr; 15459d36ed5fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)newmat->data; 154686d161a7SShri Abhyankar 154786d161a7SShri Abhyankar PetscFunctionBegin; 154886d161a7SShri Abhyankar ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 154986d161a7SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 155086d161a7SShri Abhyankar 155174c13d95SBarry Smith /* determine ownership of rows and columns */ 155274c13d95SBarry Smith m = (newmat->rmap->n < 0) ? PETSC_DECIDE : newmat->rmap->n; 155374c13d95SBarry Smith n = (newmat->cmap->n < 0) ? PETSC_DECIDE : newmat->cmap->n; 155486d161a7SShri Abhyankar 155574c13d95SBarry Smith ierr = MatSetSizes(newmat,m,n,M,N);CHKERRQ(ierr); 15569d36ed5fSBarry Smith if (!a->A || !((Mat_SeqDense*)(a->A->data))->user_alloc) { 15570298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr); 15589d36ed5fSBarry Smith } 15598c778c55SBarry Smith ierr = MatDenseGetArray(newmat,&array);CHKERRQ(ierr); 156049467e7dSBarry Smith ierr = MatGetLocalSize(newmat,&m,NULL);CHKERRQ(ierr); 156174c13d95SBarry Smith ierr = MatGetOwnershipRanges(newmat,&rowners);CHKERRQ(ierr); 1562396e826eSBarry Smith ierr = MPI_Reduce(&m,&mMax,1,MPIU_INT,MPI_MAX,0,comm);CHKERRQ(ierr); 156386d161a7SShri Abhyankar if (!rank) { 15649d36ed5fSBarry Smith ierr = PetscMalloc1(mMax*N,&vals);CHKERRQ(ierr); 156586d161a7SShri Abhyankar 156686d161a7SShri Abhyankar /* read in my part of the matrix numerical values */ 156786d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,vals,m*N,PETSC_SCALAR);CHKERRQ(ierr); 156886d161a7SShri Abhyankar 156986d161a7SShri Abhyankar /* insert into matrix-by row (this is why cannot directly read into array */ 157086d161a7SShri Abhyankar vals_ptr = vals; 157186d161a7SShri Abhyankar for (i=0; i<m; i++) { 157286d161a7SShri Abhyankar for (j=0; j<N; j++) { 157386d161a7SShri Abhyankar array[i + j*m] = *vals_ptr++; 157486d161a7SShri Abhyankar } 157586d161a7SShri Abhyankar } 157686d161a7SShri Abhyankar 157786d161a7SShri Abhyankar /* read in other processors and ship out */ 157886d161a7SShri Abhyankar for (i=1; i<size; i++) { 157986d161a7SShri Abhyankar nz = (rowners[i+1] - rowners[i])*N; 158086d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 1581a25532f0SBarry Smith ierr = MPIULong_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)(newmat))->tag,comm);CHKERRQ(ierr); 158286d161a7SShri Abhyankar } 158386d161a7SShri Abhyankar } else { 158486d161a7SShri Abhyankar /* receive numeric values */ 1585785e854fSJed Brown ierr = PetscMalloc1(m*N,&vals);CHKERRQ(ierr); 158686d161a7SShri Abhyankar 158786d161a7SShri Abhyankar /* receive message of values*/ 1588a25532f0SBarry Smith ierr = MPIULong_Recv(vals,m*N,MPIU_SCALAR,0,((PetscObject)(newmat))->tag,comm);CHKERRQ(ierr); 158986d161a7SShri Abhyankar 159086d161a7SShri Abhyankar /* insert into matrix-by row (this is why cannot directly read into array */ 159186d161a7SShri Abhyankar vals_ptr = vals; 159286d161a7SShri Abhyankar for (i=0; i<m; i++) { 159386d161a7SShri Abhyankar for (j=0; j<N; j++) { 159486d161a7SShri Abhyankar array[i + j*m] = *vals_ptr++; 159586d161a7SShri Abhyankar } 159686d161a7SShri Abhyankar } 159786d161a7SShri Abhyankar } 15988c778c55SBarry Smith ierr = MatDenseRestoreArray(newmat,&array);CHKERRQ(ierr); 159986d161a7SShri Abhyankar ierr = PetscFree(vals);CHKERRQ(ierr); 160086d161a7SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 160186d161a7SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 160286d161a7SShri Abhyankar PetscFunctionReturn(0); 160386d161a7SShri Abhyankar } 160486d161a7SShri Abhyankar 1605112444f4SShri Abhyankar PetscErrorCode MatLoad_MPIDense(Mat newmat,PetscViewer viewer) 160686d161a7SShri Abhyankar { 1607dfdea288SBarry Smith Mat_MPIDense *a; 160886d161a7SShri Abhyankar PetscScalar *vals,*svals; 1609ce94432eSBarry Smith MPI_Comm comm; 161086d161a7SShri Abhyankar MPI_Status status; 161149467e7dSBarry Smith PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*rowners,*sndcounts,m,n,maxnz; 161286d161a7SShri Abhyankar PetscInt header[4],*rowlengths = 0,M,N,*cols; 161349467e7dSBarry Smith PetscInt *ourlens,*procsnz = 0,jj,*mycols,*smycols; 16149d36ed5fSBarry Smith PetscInt i,nz,j,rstart,rend; 161586d161a7SShri Abhyankar int fd; 161686d161a7SShri Abhyankar PetscErrorCode ierr; 161786d161a7SShri Abhyankar 161886d161a7SShri Abhyankar PetscFunctionBegin; 1619c98fd787SBarry Smith /* force binary viewer to load .info file if it has not yet done so */ 1620c98fd787SBarry Smith ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr); 1621ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr); 162286d161a7SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 162386d161a7SShri Abhyankar ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 162486d161a7SShri Abhyankar ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 16255872f025SBarry Smith if (!rank) { 162686d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr); 162786d161a7SShri Abhyankar if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 162886d161a7SShri Abhyankar } 162986d161a7SShri Abhyankar ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 163086d161a7SShri Abhyankar M = header[1]; N = header[2]; nz = header[3]; 163186d161a7SShri Abhyankar 163286d161a7SShri Abhyankar /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */ 16339d36ed5fSBarry Smith if (newmat->rmap->N < 0) newmat->rmap->N = M; 16349d36ed5fSBarry Smith if (newmat->cmap->N < 0) newmat->cmap->N = N; 163586d161a7SShri Abhyankar 16369d36ed5fSBarry Smith if (newmat->rmap->N != M) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%D) and input matrix has (%D)",M,newmat->rmap->N); 16379d36ed5fSBarry Smith if (newmat->cmap->N != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%D) and input matrix has (%D)",N,newmat->cmap->N); 163886d161a7SShri Abhyankar 163986d161a7SShri Abhyankar /* 164086d161a7SShri Abhyankar Handle case where matrix is stored on disk as a dense matrix 164186d161a7SShri Abhyankar */ 164286d161a7SShri Abhyankar if (nz == MATRIX_BINARY_FORMAT_DENSE) { 16439d36ed5fSBarry Smith ierr = MatLoad_MPIDense_DenseInFile(comm,fd,M,N,newmat);CHKERRQ(ierr); 164486d161a7SShri Abhyankar PetscFunctionReturn(0); 164586d161a7SShri Abhyankar } 164686d161a7SShri Abhyankar 164786d161a7SShri Abhyankar /* determine ownership of all rows */ 16482205254eSKarl Rupp if (newmat->rmap->n < 0) { 16492205254eSKarl Rupp ierr = PetscMPIIntCast(M/size + ((M % size) > rank),&m);CHKERRQ(ierr); 16502205254eSKarl Rupp } else { 16512205254eSKarl Rupp ierr = PetscMPIIntCast(newmat->rmap->n,&m);CHKERRQ(ierr); 16522205254eSKarl Rupp } 165349467e7dSBarry Smith if (newmat->cmap->n < 0) { 165449467e7dSBarry Smith n = PETSC_DECIDE; 165549467e7dSBarry Smith } else { 165649467e7dSBarry Smith ierr = PetscMPIIntCast(newmat->cmap->n,&n);CHKERRQ(ierr); 165749467e7dSBarry Smith } 165849467e7dSBarry Smith 1659854ce69bSBarry Smith ierr = PetscMalloc1(size+2,&rowners);CHKERRQ(ierr); 166086d161a7SShri Abhyankar ierr = MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 166186d161a7SShri Abhyankar rowners[0] = 0; 166286d161a7SShri Abhyankar for (i=2; i<=size; i++) { 166386d161a7SShri Abhyankar rowners[i] += rowners[i-1]; 166486d161a7SShri Abhyankar } 166586d161a7SShri Abhyankar rstart = rowners[rank]; 166686d161a7SShri Abhyankar rend = rowners[rank+1]; 166786d161a7SShri Abhyankar 166886d161a7SShri Abhyankar /* distribute row lengths to all processors */ 166949467e7dSBarry Smith ierr = PetscMalloc1(rend-rstart,&ourlens);CHKERRQ(ierr); 167086d161a7SShri Abhyankar if (!rank) { 1671785e854fSJed Brown ierr = PetscMalloc1(M,&rowlengths);CHKERRQ(ierr); 167286d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 1673785e854fSJed Brown ierr = PetscMalloc1(size,&sndcounts);CHKERRQ(ierr); 167486d161a7SShri Abhyankar for (i=0; i<size; i++) sndcounts[i] = rowners[i+1] - rowners[i]; 167586d161a7SShri Abhyankar ierr = MPI_Scatterv(rowlengths,sndcounts,rowners,MPIU_INT,ourlens,rend-rstart,MPIU_INT,0,comm);CHKERRQ(ierr); 167686d161a7SShri Abhyankar ierr = PetscFree(sndcounts);CHKERRQ(ierr); 167786d161a7SShri Abhyankar } else { 167886d161a7SShri Abhyankar ierr = MPI_Scatterv(0,0,0,MPIU_INT,ourlens,rend-rstart,MPIU_INT,0,comm);CHKERRQ(ierr); 167986d161a7SShri Abhyankar } 168086d161a7SShri Abhyankar 168186d161a7SShri Abhyankar if (!rank) { 168286d161a7SShri Abhyankar /* calculate the number of nonzeros on each processor */ 1683785e854fSJed Brown ierr = PetscMalloc1(size,&procsnz);CHKERRQ(ierr); 168486d161a7SShri Abhyankar ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 168586d161a7SShri Abhyankar for (i=0; i<size; i++) { 168686d161a7SShri Abhyankar for (j=rowners[i]; j< rowners[i+1]; j++) { 168786d161a7SShri Abhyankar procsnz[i] += rowlengths[j]; 168886d161a7SShri Abhyankar } 168986d161a7SShri Abhyankar } 169086d161a7SShri Abhyankar ierr = PetscFree(rowlengths);CHKERRQ(ierr); 169186d161a7SShri Abhyankar 169286d161a7SShri Abhyankar /* determine max buffer needed and allocate it */ 169386d161a7SShri Abhyankar maxnz = 0; 169486d161a7SShri Abhyankar for (i=0; i<size; i++) { 169586d161a7SShri Abhyankar maxnz = PetscMax(maxnz,procsnz[i]); 169686d161a7SShri Abhyankar } 1697785e854fSJed Brown ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr); 169886d161a7SShri Abhyankar 169986d161a7SShri Abhyankar /* read in my part of the matrix column indices */ 170086d161a7SShri Abhyankar nz = procsnz[0]; 1701785e854fSJed Brown ierr = PetscMalloc1(nz,&mycols);CHKERRQ(ierr); 170286d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 170386d161a7SShri Abhyankar 170486d161a7SShri Abhyankar /* read in every one elses and ship off */ 170586d161a7SShri Abhyankar for (i=1; i<size; i++) { 170686d161a7SShri Abhyankar nz = procsnz[i]; 170786d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 170886d161a7SShri Abhyankar ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 170986d161a7SShri Abhyankar } 171086d161a7SShri Abhyankar ierr = PetscFree(cols);CHKERRQ(ierr); 171186d161a7SShri Abhyankar } else { 171286d161a7SShri Abhyankar /* determine buffer space needed for message */ 171386d161a7SShri Abhyankar nz = 0; 171486d161a7SShri Abhyankar for (i=0; i<m; i++) { 171586d161a7SShri Abhyankar nz += ourlens[i]; 171686d161a7SShri Abhyankar } 1717854ce69bSBarry Smith ierr = PetscMalloc1(nz+1,&mycols);CHKERRQ(ierr); 171886d161a7SShri Abhyankar 171986d161a7SShri Abhyankar /* receive message of column indices*/ 172086d161a7SShri Abhyankar ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 172186d161a7SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 172286d161a7SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 172386d161a7SShri Abhyankar } 172486d161a7SShri Abhyankar 172549467e7dSBarry Smith ierr = MatSetSizes(newmat,m,n,M,N);CHKERRQ(ierr); 1726dfdea288SBarry Smith a = (Mat_MPIDense*)newmat->data; 17272e3566b0SBarry Smith if (!a->A || !((Mat_SeqDense*)(a->A->data))->user_alloc) { 17280298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr); 1729dfdea288SBarry Smith } 173086d161a7SShri Abhyankar 173186d161a7SShri Abhyankar if (!rank) { 1732785e854fSJed Brown ierr = PetscMalloc1(maxnz,&vals);CHKERRQ(ierr); 173386d161a7SShri Abhyankar 173486d161a7SShri Abhyankar /* read in my part of the matrix numerical values */ 173586d161a7SShri Abhyankar nz = procsnz[0]; 173686d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 173786d161a7SShri Abhyankar 173886d161a7SShri Abhyankar /* insert into matrix */ 173986d161a7SShri Abhyankar jj = rstart; 174086d161a7SShri Abhyankar smycols = mycols; 174186d161a7SShri Abhyankar svals = vals; 174286d161a7SShri Abhyankar for (i=0; i<m; i++) { 174386d161a7SShri Abhyankar ierr = MatSetValues(newmat,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 174486d161a7SShri Abhyankar smycols += ourlens[i]; 174586d161a7SShri Abhyankar svals += ourlens[i]; 174686d161a7SShri Abhyankar jj++; 174786d161a7SShri Abhyankar } 174886d161a7SShri Abhyankar 174986d161a7SShri Abhyankar /* read in other processors and ship out */ 175086d161a7SShri Abhyankar for (i=1; i<size; i++) { 175186d161a7SShri Abhyankar nz = procsnz[i]; 175286d161a7SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 175386d161a7SShri Abhyankar ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 175486d161a7SShri Abhyankar } 175586d161a7SShri Abhyankar ierr = PetscFree(procsnz);CHKERRQ(ierr); 175686d161a7SShri Abhyankar } else { 175786d161a7SShri Abhyankar /* receive numeric values */ 1758854ce69bSBarry Smith ierr = PetscMalloc1(nz+1,&vals);CHKERRQ(ierr); 175986d161a7SShri Abhyankar 176086d161a7SShri Abhyankar /* receive message of values*/ 176186d161a7SShri Abhyankar ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr); 176286d161a7SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 176386d161a7SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 176486d161a7SShri Abhyankar 176586d161a7SShri Abhyankar /* insert into matrix */ 176686d161a7SShri Abhyankar jj = rstart; 176786d161a7SShri Abhyankar smycols = mycols; 176886d161a7SShri Abhyankar svals = vals; 176986d161a7SShri Abhyankar for (i=0; i<m; i++) { 177086d161a7SShri Abhyankar ierr = MatSetValues(newmat,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 177186d161a7SShri Abhyankar smycols += ourlens[i]; 177286d161a7SShri Abhyankar svals += ourlens[i]; 177386d161a7SShri Abhyankar jj++; 177486d161a7SShri Abhyankar } 177586d161a7SShri Abhyankar } 177649467e7dSBarry Smith ierr = PetscFree(ourlens);CHKERRQ(ierr); 177786d161a7SShri Abhyankar ierr = PetscFree(vals);CHKERRQ(ierr); 177886d161a7SShri Abhyankar ierr = PetscFree(mycols);CHKERRQ(ierr); 177986d161a7SShri Abhyankar ierr = PetscFree(rowners);CHKERRQ(ierr); 178086d161a7SShri Abhyankar 178186d161a7SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 178286d161a7SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 178386d161a7SShri Abhyankar PetscFunctionReturn(0); 178486d161a7SShri Abhyankar } 178586d161a7SShri Abhyankar 1786ace3abfcSBarry Smith PetscErrorCode MatEqual_MPIDense(Mat A,Mat B,PetscBool *flag) 17876e4ee0c6SHong Zhang { 17886e4ee0c6SHong Zhang Mat_MPIDense *matB = (Mat_MPIDense*)B->data,*matA = (Mat_MPIDense*)A->data; 17896e4ee0c6SHong Zhang Mat a,b; 1790ace3abfcSBarry Smith PetscBool flg; 17916e4ee0c6SHong Zhang PetscErrorCode ierr; 179290ace30eSBarry Smith 17936e4ee0c6SHong Zhang PetscFunctionBegin; 17946e4ee0c6SHong Zhang a = matA->A; 17956e4ee0c6SHong Zhang b = matB->A; 17966e4ee0c6SHong Zhang ierr = MatEqual(a,b,&flg);CHKERRQ(ierr); 1797b2566f29SBarry Smith ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 17986e4ee0c6SHong Zhang PetscFunctionReturn(0); 17996e4ee0c6SHong Zhang } 180090ace30eSBarry Smith 1801baa3c1c6SHong Zhang PetscErrorCode MatDestroy_MatTransMatMult_MPIDense_MPIDense(Mat A) 1802baa3c1c6SHong Zhang { 1803baa3c1c6SHong Zhang PetscErrorCode ierr; 1804baa3c1c6SHong Zhang Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1805baa3c1c6SHong Zhang Mat_TransMatMultDense *atb = a->atbdense; 1806baa3c1c6SHong Zhang 1807baa3c1c6SHong Zhang PetscFunctionBegin; 1808c5ef1628SHong Zhang ierr = PetscFree3(atb->sendbuf,atb->atbarray,atb->recvcounts);CHKERRQ(ierr); 1809baa3c1c6SHong Zhang ierr = (atb->destroy)(A);CHKERRQ(ierr); 1810baa3c1c6SHong Zhang ierr = PetscFree(atb);CHKERRQ(ierr); 1811baa3c1c6SHong Zhang PetscFunctionReturn(0); 1812baa3c1c6SHong Zhang } 1813baa3c1c6SHong Zhang 1814cb20be35SHong Zhang PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 1815cb20be35SHong Zhang { 1816baa3c1c6SHong Zhang Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 1817660d5466SHong Zhang Mat_SeqDense *aseq=(Mat_SeqDense*)(a->A)->data, *bseq=(Mat_SeqDense*)(b->A)->data; 1818baa3c1c6SHong Zhang Mat_TransMatMultDense *atb = c->atbdense; 1819cb20be35SHong Zhang PetscErrorCode ierr; 1820cb20be35SHong Zhang MPI_Comm comm; 1821d5017740SHong Zhang PetscMPIInt rank,size,*recvcounts=atb->recvcounts; 1822c5ef1628SHong Zhang PetscScalar *carray,*atbarray=atb->atbarray,*sendbuf=atb->sendbuf; 1823d5017740SHong Zhang PetscInt i,cN=C->cmap->N,cM=C->rmap->N,proc,k,j; 1824660d5466SHong Zhang PetscScalar _DOne=1.0,_DZero=0.0; 1825adc7a786SHong Zhang PetscBLASInt am,an,bn,aN; 1826e68c0b26SHong Zhang const PetscInt *ranges; 1827cb20be35SHong Zhang 1828cb20be35SHong Zhang PetscFunctionBegin; 1829cb20be35SHong Zhang ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 1830cb20be35SHong Zhang ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 1831cb20be35SHong Zhang ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1832e68c0b26SHong Zhang 1833c5ef1628SHong Zhang /* compute atbarray = aseq^T * bseq */ 1834660d5466SHong Zhang ierr = PetscBLASIntCast(a->A->cmap->n,&an);CHKERRQ(ierr); 1835660d5466SHong Zhang ierr = PetscBLASIntCast(b->A->cmap->n,&bn);CHKERRQ(ierr); 1836660d5466SHong Zhang ierr = PetscBLASIntCast(a->A->rmap->n,&am);CHKERRQ(ierr); 1837adc7a786SHong Zhang ierr = PetscBLASIntCast(A->cmap->N,&aN);CHKERRQ(ierr); 1838adc7a786SHong Zhang PetscStackCallBLAS("BLASgemm",BLASgemm_("T","N",&an,&bn,&am,&_DOne,aseq->v,&aseq->lda,bseq->v,&bseq->lda,&_DZero,atbarray,&aN)); 1839cb20be35SHong Zhang 1840cb20be35SHong Zhang ierr = MatGetOwnershipRanges(C,&ranges);CHKERRQ(ierr); 1841c5ef1628SHong Zhang for (i=0; i<size; i++) recvcounts[i] = (ranges[i+1] - ranges[i])*cN; 1842cb20be35SHong Zhang 1843660d5466SHong Zhang /* arrange atbarray into sendbuf */ 1844cb20be35SHong Zhang k = 0; 1845cb20be35SHong Zhang for (proc=0; proc<size; proc++) { 1846baa3c1c6SHong Zhang for (j=0; j<cN; j++) { 1847c5ef1628SHong Zhang for (i=ranges[proc]; i<ranges[proc+1]; i++) sendbuf[k++] = atbarray[i+j*cM]; 1848cb20be35SHong Zhang } 1849cb20be35SHong Zhang } 1850c5ef1628SHong Zhang /* sum all atbarray to local values of C */ 1851660d5466SHong Zhang ierr = MatDenseGetArray(c->A,&carray);CHKERRQ(ierr); 18523462b7efSHong Zhang ierr = MPI_Reduce_scatter(sendbuf,carray,recvcounts,MPIU_SCALAR,MPIU_SUM,comm);CHKERRQ(ierr); 1853660d5466SHong Zhang ierr = MatDenseRestoreArray(c->A,&carray);CHKERRQ(ierr); 1854cb20be35SHong Zhang PetscFunctionReturn(0); 1855cb20be35SHong Zhang } 1856cb20be35SHong Zhang 1857cb20be35SHong Zhang PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat *C) 1858cb20be35SHong Zhang { 1859cb20be35SHong Zhang PetscErrorCode ierr; 1860baa3c1c6SHong Zhang Mat Cdense; 1861cb20be35SHong Zhang MPI_Comm comm; 1862baa3c1c6SHong Zhang PetscMPIInt size; 1863660d5466SHong Zhang PetscInt cm=A->cmap->n,cM,cN=B->cmap->N; 1864baa3c1c6SHong Zhang Mat_MPIDense *c; 1865baa3c1c6SHong Zhang Mat_TransMatMultDense *atb; 1866cb20be35SHong Zhang 1867cb20be35SHong Zhang PetscFunctionBegin; 1868baa3c1c6SHong Zhang ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 1869cb20be35SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) { 1870cb20be35SHong Zhang SETERRQ4(comm,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != B (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 1871cb20be35SHong Zhang } 1872cb20be35SHong Zhang 1873baa3c1c6SHong Zhang /* create matrix product Cdense */ 1874baa3c1c6SHong Zhang ierr = MatCreate(comm,&Cdense);CHKERRQ(ierr); 1875660d5466SHong Zhang ierr = MatSetSizes(Cdense,cm,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 1876baa3c1c6SHong Zhang ierr = MatSetType(Cdense,MATMPIDENSE);CHKERRQ(ierr); 1877baa3c1c6SHong Zhang ierr = MatMPIDenseSetPreallocation(Cdense,NULL);CHKERRQ(ierr); 1878baa3c1c6SHong Zhang ierr = MatAssemblyBegin(Cdense,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1879baa3c1c6SHong Zhang ierr = MatAssemblyEnd(Cdense,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1880baa3c1c6SHong Zhang *C = Cdense; 1881baa3c1c6SHong Zhang 1882baa3c1c6SHong Zhang /* create data structure for reuse Cdense */ 1883baa3c1c6SHong Zhang ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1884baa3c1c6SHong Zhang ierr = PetscNew(&atb);CHKERRQ(ierr); 1885660d5466SHong Zhang cM = Cdense->rmap->N; 1886c5ef1628SHong Zhang ierr = PetscMalloc3(cM*cN,&atb->sendbuf,cM*cN,&atb->atbarray,size,&atb->recvcounts);CHKERRQ(ierr); 1887baa3c1c6SHong Zhang 1888baa3c1c6SHong Zhang c = (Mat_MPIDense*)Cdense->data; 1889baa3c1c6SHong Zhang c->atbdense = atb; 1890baa3c1c6SHong Zhang atb->destroy = Cdense->ops->destroy; 1891baa3c1c6SHong Zhang Cdense->ops->destroy = MatDestroy_MatTransMatMult_MPIDense_MPIDense; 1892cb20be35SHong Zhang PetscFunctionReturn(0); 1893cb20be35SHong Zhang } 1894cb20be35SHong Zhang 1895cb20be35SHong Zhang PetscErrorCode MatTransposeMatMult_MPIDense_MPIDense(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C) 1896cb20be35SHong Zhang { 1897cb20be35SHong Zhang PetscErrorCode ierr; 1898cb20be35SHong Zhang 1899cb20be35SHong Zhang PetscFunctionBegin; 1900cb20be35SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 1901cb20be35SHong Zhang ierr = MatTransposeMatMultSymbolic_MPIDense_MPIDense(A,B,fill,C);CHKERRQ(ierr); 1902cb20be35SHong Zhang } 1903cb20be35SHong Zhang ierr = MatTransposeMatMultNumeric_MPIDense_MPIDense(A,B,*C);CHKERRQ(ierr); 1904cb20be35SHong Zhang PetscFunctionReturn(0); 1905cb20be35SHong Zhang } 1906320f2790SHong Zhang 1907320f2790SHong Zhang PetscErrorCode MatDestroy_MatMatMult_MPIDense_MPIDense(Mat A) 1908320f2790SHong Zhang { 1909320f2790SHong Zhang PetscErrorCode ierr; 1910320f2790SHong Zhang Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1911320f2790SHong Zhang Mat_MatMultDense *ab = a->abdense; 1912320f2790SHong Zhang 1913320f2790SHong Zhang PetscFunctionBegin; 1914320f2790SHong Zhang ierr = MatDestroy(&ab->Ce);CHKERRQ(ierr); 1915320f2790SHong Zhang ierr = MatDestroy(&ab->Ae);CHKERRQ(ierr); 1916320f2790SHong Zhang ierr = MatDestroy(&ab->Be);CHKERRQ(ierr); 1917320f2790SHong Zhang 1918320f2790SHong Zhang ierr = (ab->destroy)(A);CHKERRQ(ierr); 1919320f2790SHong Zhang ierr = PetscFree(ab);CHKERRQ(ierr); 1920320f2790SHong Zhang PetscFunctionReturn(0); 1921320f2790SHong Zhang } 1922320f2790SHong Zhang 19235242a7b1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 1924320f2790SHong Zhang PetscErrorCode MatMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 1925320f2790SHong Zhang { 1926320f2790SHong Zhang PetscErrorCode ierr; 1927320f2790SHong Zhang Mat_MPIDense *c=(Mat_MPIDense*)C->data; 1928320f2790SHong Zhang Mat_MatMultDense *ab=c->abdense; 1929320f2790SHong Zhang 1930320f2790SHong Zhang PetscFunctionBegin; 1931de0a22f0SHong Zhang ierr = MatConvert_MPIDense_Elemental(A,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Ae);CHKERRQ(ierr); 1932de0a22f0SHong Zhang ierr = MatConvert_MPIDense_Elemental(B,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Be);CHKERRQ(ierr); 1933320f2790SHong Zhang ierr = MatMatMultNumeric(ab->Ae,ab->Be,ab->Ce);CHKERRQ(ierr); 1934de0a22f0SHong Zhang ierr = MatConvert(ab->Ce,MATMPIDENSE,MAT_REUSE_MATRIX,&C);CHKERRQ(ierr); 1935320f2790SHong Zhang PetscFunctionReturn(0); 1936320f2790SHong Zhang } 1937320f2790SHong Zhang 1938320f2790SHong Zhang PetscErrorCode MatMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat *C) 1939320f2790SHong Zhang { 1940320f2790SHong Zhang PetscErrorCode ierr; 1941320f2790SHong Zhang Mat Ae,Be,Ce; 1942320f2790SHong Zhang Mat_MPIDense *c; 1943320f2790SHong Zhang Mat_MatMultDense *ab; 1944320f2790SHong Zhang 1945320f2790SHong Zhang PetscFunctionBegin; 1946320f2790SHong Zhang if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend) { 1947378336b6SHong Zhang SETERRQ4(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != B (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 1948320f2790SHong Zhang } 1949320f2790SHong Zhang 1950320f2790SHong Zhang /* convert A and B to Elemental matrices Ae and Be */ 1951320f2790SHong Zhang ierr = MatConvert(A,MATELEMENTAL,MAT_INITIAL_MATRIX, &Ae);CHKERRQ(ierr); 1952320f2790SHong Zhang ierr = MatConvert(B,MATELEMENTAL,MAT_INITIAL_MATRIX, &Be);CHKERRQ(ierr); 1953320f2790SHong Zhang 1954320f2790SHong Zhang /* Ce = Ae*Be */ 1955320f2790SHong Zhang ierr = MatMatMultSymbolic(Ae,Be,fill,&Ce);CHKERRQ(ierr); 1956320f2790SHong Zhang ierr = MatMatMultNumeric(Ae,Be,Ce);CHKERRQ(ierr); 1957320f2790SHong Zhang 1958320f2790SHong Zhang /* convert Ce to C */ 1959320f2790SHong Zhang ierr = MatConvert(Ce,MATMPIDENSE,MAT_INITIAL_MATRIX,C);CHKERRQ(ierr); 1960320f2790SHong Zhang 1961320f2790SHong Zhang /* create data structure for reuse Cdense */ 1962320f2790SHong Zhang ierr = PetscNew(&ab);CHKERRQ(ierr); 1963320f2790SHong Zhang c = (Mat_MPIDense*)(*C)->data; 1964320f2790SHong Zhang c->abdense = ab; 1965320f2790SHong Zhang 1966320f2790SHong Zhang ab->Ae = Ae; 1967320f2790SHong Zhang ab->Be = Be; 1968320f2790SHong Zhang ab->Ce = Ce; 1969320f2790SHong Zhang ab->destroy = (*C)->ops->destroy; 1970320f2790SHong Zhang (*C)->ops->destroy = MatDestroy_MatMatMult_MPIDense_MPIDense; 19719775878aSHong Zhang (*C)->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIDense; 1972320f2790SHong Zhang PetscFunctionReturn(0); 1973320f2790SHong Zhang } 1974320f2790SHong Zhang 1975150d2497SBarry Smith PETSC_INTERN PetscErrorCode MatMatMult_MPIDense_MPIDense(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C) 1976320f2790SHong Zhang { 1977320f2790SHong Zhang PetscErrorCode ierr; 1978320f2790SHong Zhang 1979320f2790SHong Zhang PetscFunctionBegin; 1980320f2790SHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* simbolic product includes numeric product */ 198157299f2fSHong Zhang ierr = PetscLogEventBegin(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr); 1982320f2790SHong Zhang ierr = MatMatMultSymbolic_MPIDense_MPIDense(A,B,fill,C);CHKERRQ(ierr); 198357299f2fSHong Zhang ierr = PetscLogEventEnd(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr); 1984320f2790SHong Zhang } else { 198557299f2fSHong Zhang ierr = PetscLogEventBegin(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr); 1986320f2790SHong Zhang ierr = MatMatMultNumeric_MPIDense_MPIDense(A,B,*C);CHKERRQ(ierr); 198757299f2fSHong Zhang ierr = PetscLogEventEnd(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr); 1988320f2790SHong Zhang } 1989320f2790SHong Zhang PetscFunctionReturn(0); 1990320f2790SHong Zhang } 19915242a7b1SHong Zhang #endif 1992