xref: /petsc/src/mat/impls/dense/mpi/mpidense.c (revision 857cbf51cdeafdb93f9c50bd4cde04c6075da3dc)
1be1d678aSKris Buschelman 
2ed3cc1f0SBarry Smith /*
3ed3cc1f0SBarry Smith    Basic functions for basic parallel dense matrices.
4ed3cc1f0SBarry Smith */
5ed3cc1f0SBarry Smith 
6c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h>    /*I   "petscmat.h"  I*/
78949adfdSHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h>
8baa3c1c6SHong Zhang #include <petscblaslapack.h>
98965ea79SLois Curfman McInnes 
10ab92ecdeSBarry Smith /*@
11ab92ecdeSBarry Smith 
12ab92ecdeSBarry Smith       MatDenseGetLocalMatrix - For a MATMPIDENSE or MATSEQDENSE matrix returns the sequential
13ab92ecdeSBarry Smith               matrix that represents the operator. For sequential matrices it returns itself.
14ab92ecdeSBarry Smith 
15ab92ecdeSBarry Smith     Input Parameter:
16ab92ecdeSBarry Smith .      A - the Seq or MPI dense matrix
17ab92ecdeSBarry Smith 
18ab92ecdeSBarry Smith     Output Parameter:
19ab92ecdeSBarry Smith .      B - the inner matrix
20ab92ecdeSBarry Smith 
218e6c10adSSatish Balay     Level: intermediate
228e6c10adSSatish Balay 
23ab92ecdeSBarry Smith @*/
24ab92ecdeSBarry Smith PetscErrorCode MatDenseGetLocalMatrix(Mat A,Mat *B)
25ab92ecdeSBarry Smith {
26ab92ecdeSBarry Smith   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
27ab92ecdeSBarry Smith   PetscErrorCode ierr;
28ace3abfcSBarry Smith   PetscBool      flg;
29ab92ecdeSBarry Smith 
30ab92ecdeSBarry Smith   PetscFunctionBegin;
31d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
32d5ea218eSStefano Zampini   PetscValidPointer(B,2);
33f140bc17SStefano Zampini   ierr = PetscObjectBaseTypeCompare((PetscObject)A,MATMPIDENSE,&flg);CHKERRQ(ierr);
342205254eSKarl Rupp   if (flg) *B = mat->A;
35f140bc17SStefano Zampini   else {
36f140bc17SStefano Zampini     ierr = PetscObjectBaseTypeCompare((PetscObject)A,MATSEQDENSE,&flg);CHKERRQ(ierr);
37f140bc17SStefano Zampini     if (!flg) SETERRQ1(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Not for matrix type %s",((PetscObject)A)->type_name);
38f140bc17SStefano Zampini     *B = A;
39f140bc17SStefano Zampini   }
40ab92ecdeSBarry Smith   PetscFunctionReturn(0);
41ab92ecdeSBarry Smith }
42ab92ecdeSBarry Smith 
43a76f77c3SStefano Zampini PetscErrorCode MatCopy_MPIDense(Mat A, Mat B, MatStructure s)
44a76f77c3SStefano Zampini {
45a76f77c3SStefano Zampini   Mat_MPIDense   *Amat = (Mat_MPIDense*)A->data;
46a76f77c3SStefano Zampini   Mat_MPIDense   *Bmat = (Mat_MPIDense*)B->data;
47a76f77c3SStefano Zampini   PetscErrorCode ierr;
48a76f77c3SStefano Zampini 
49a76f77c3SStefano Zampini   PetscFunctionBegin;
50a76f77c3SStefano Zampini   ierr = MatCopy(Amat->A,Bmat->A,s);CHKERRQ(ierr);
51a76f77c3SStefano Zampini   PetscFunctionReturn(0);
52a76f77c3SStefano Zampini }
53a76f77c3SStefano Zampini 
54ba8c8a56SBarry Smith PetscErrorCode MatGetRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
55ba8c8a56SBarry Smith {
56ba8c8a56SBarry Smith   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
57ba8c8a56SBarry Smith   PetscErrorCode ierr;
58d0f46423SBarry Smith   PetscInt       lrow,rstart = A->rmap->rstart,rend = A->rmap->rend;
59ba8c8a56SBarry Smith 
60ba8c8a56SBarry Smith   PetscFunctionBegin;
61e7e72b3dSBarry Smith   if (row < rstart || row >= rend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows");
62ba8c8a56SBarry Smith   lrow = row - rstart;
63ba8c8a56SBarry Smith   ierr = MatGetRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v);CHKERRQ(ierr);
64ba8c8a56SBarry Smith   PetscFunctionReturn(0);
65ba8c8a56SBarry Smith }
66ba8c8a56SBarry Smith 
67637a0070SStefano Zampini PetscErrorCode MatRestoreRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
68ba8c8a56SBarry Smith {
69637a0070SStefano Zampini   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
70ba8c8a56SBarry Smith   PetscErrorCode ierr;
71637a0070SStefano Zampini   PetscInt       lrow,rstart = A->rmap->rstart,rend = A->rmap->rend;
72ba8c8a56SBarry Smith 
73ba8c8a56SBarry Smith   PetscFunctionBegin;
74637a0070SStefano Zampini   if (row < rstart || row >= rend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows");
75637a0070SStefano Zampini   lrow = row - rstart;
76637a0070SStefano Zampini   ierr = MatRestoreRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v);CHKERRQ(ierr);
77ba8c8a56SBarry Smith   PetscFunctionReturn(0);
78ba8c8a56SBarry Smith }
79ba8c8a56SBarry Smith 
8011bd1e4dSLisandro Dalcin PetscErrorCode  MatGetDiagonalBlock_MPIDense(Mat A,Mat *a)
810de54da6SSatish Balay {
820de54da6SSatish Balay   Mat_MPIDense   *mdn = (Mat_MPIDense*)A->data;
836849ba73SBarry Smith   PetscErrorCode ierr;
84d0f46423SBarry Smith   PetscInt       m = A->rmap->n,rstart = A->rmap->rstart;
8587828ca2SBarry Smith   PetscScalar    *array;
860de54da6SSatish Balay   MPI_Comm       comm;
874b6ae80fSStefano Zampini   PetscBool      flg;
8811bd1e4dSLisandro Dalcin   Mat            B;
890de54da6SSatish Balay 
900de54da6SSatish Balay   PetscFunctionBegin;
914b6ae80fSStefano Zampini   ierr = MatHasCongruentLayouts(A,&flg);CHKERRQ(ierr);
924b6ae80fSStefano Zampini   if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only square matrices supported.");
9311bd1e4dSLisandro Dalcin   ierr = PetscObjectQuery((PetscObject)A,"DiagonalBlock",(PetscObject*)&B);CHKERRQ(ierr);
94616b8fbbSStefano Zampini   if (!B) { /* This should use MatDenseGetSubMatrix (not create), but we would need a call like MatRestoreDiagonalBlock */
954b6ae80fSStefano Zampini 
964b6ae80fSStefano Zampini     ierr = PetscObjectTypeCompare((PetscObject)mdn->A,MATSEQDENSECUDA,&flg);CHKERRQ(ierr);
974b6ae80fSStefano Zampini     if (flg) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Not coded for %s. Send an email to petsc-dev@mcs.anl.gov to request this feature",MATSEQDENSECUDA);
980de54da6SSatish Balay     ierr = PetscObjectGetComm((PetscObject)(mdn->A),&comm);CHKERRQ(ierr);
9911bd1e4dSLisandro Dalcin     ierr = MatCreate(comm,&B);CHKERRQ(ierr);
10011bd1e4dSLisandro Dalcin     ierr = MatSetSizes(B,m,m,m,m);CHKERRQ(ierr);
10111bd1e4dSLisandro Dalcin     ierr = MatSetType(B,((PetscObject)mdn->A)->type_name);CHKERRQ(ierr);
1024b6ae80fSStefano Zampini     ierr = MatDenseGetArrayRead(mdn->A,(const PetscScalar**)&array);CHKERRQ(ierr);
10311bd1e4dSLisandro Dalcin     ierr = MatSeqDenseSetPreallocation(B,array+m*rstart);CHKERRQ(ierr);
1044b6ae80fSStefano Zampini     ierr = MatDenseRestoreArrayRead(mdn->A,(const PetscScalar**)&array);CHKERRQ(ierr);
10511bd1e4dSLisandro Dalcin     ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
10611bd1e4dSLisandro Dalcin     ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
10711bd1e4dSLisandro Dalcin     ierr = PetscObjectCompose((PetscObject)A,"DiagonalBlock",(PetscObject)B);CHKERRQ(ierr);
10811bd1e4dSLisandro Dalcin     *a   = B;
10911bd1e4dSLisandro Dalcin     ierr = MatDestroy(&B);CHKERRQ(ierr);
1102205254eSKarl Rupp   } else *a = B;
1110de54da6SSatish Balay   PetscFunctionReturn(0);
1120de54da6SSatish Balay }
1130de54da6SSatish Balay 
11413f74950SBarry Smith PetscErrorCode MatSetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],const PetscScalar v[],InsertMode addv)
1158965ea79SLois Curfman McInnes {
11639b7565bSBarry Smith   Mat_MPIDense   *A = (Mat_MPIDense*)mat->data;
117dfbe8321SBarry Smith   PetscErrorCode ierr;
118d0f46423SBarry Smith   PetscInt       i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row;
119ace3abfcSBarry Smith   PetscBool      roworiented = A->roworiented;
1208965ea79SLois Curfman McInnes 
1213a40ed3dSBarry Smith   PetscFunctionBegin;
1228965ea79SLois Curfman McInnes   for (i=0; i<m; i++) {
1235ef9f2a5SBarry Smith     if (idxm[i] < 0) continue;
124e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large");
1258965ea79SLois Curfman McInnes     if (idxm[i] >= rstart && idxm[i] < rend) {
1268965ea79SLois Curfman McInnes       row = idxm[i] - rstart;
12739b7565bSBarry Smith       if (roworiented) {
12839b7565bSBarry Smith         ierr = MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv);CHKERRQ(ierr);
1293a40ed3dSBarry Smith       } else {
1308965ea79SLois Curfman McInnes         for (j=0; j<n; j++) {
1315ef9f2a5SBarry Smith           if (idxn[j] < 0) continue;
132e32f2f54SBarry Smith           if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large");
13339b7565bSBarry Smith           ierr = MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv);CHKERRQ(ierr);
13439b7565bSBarry Smith         }
1358965ea79SLois Curfman McInnes       }
1362205254eSKarl Rupp     } else if (!A->donotstash) {
1375080c13bSMatthew G Knepley       mat->assembled = PETSC_FALSE;
13839b7565bSBarry Smith       if (roworiented) {
139b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,idxm[i],n,idxn,v+i*n,PETSC_FALSE);CHKERRQ(ierr);
140d36fbae8SSatish Balay       } else {
141b400d20cSBarry Smith         ierr = MatStashValuesCol_Private(&mat->stash,idxm[i],n,idxn,v+i,m,PETSC_FALSE);CHKERRQ(ierr);
14239b7565bSBarry Smith       }
143b49de8d1SLois Curfman McInnes     }
144b49de8d1SLois Curfman McInnes   }
1453a40ed3dSBarry Smith   PetscFunctionReturn(0);
146b49de8d1SLois Curfman McInnes }
147b49de8d1SLois Curfman McInnes 
14813f74950SBarry Smith PetscErrorCode MatGetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
149b49de8d1SLois Curfman McInnes {
150b49de8d1SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
151dfbe8321SBarry Smith   PetscErrorCode ierr;
152d0f46423SBarry Smith   PetscInt       i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row;
153b49de8d1SLois Curfman McInnes 
1543a40ed3dSBarry Smith   PetscFunctionBegin;
155b49de8d1SLois Curfman McInnes   for (i=0; i<m; i++) {
156e32f2f54SBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); */
157e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large");
158b49de8d1SLois Curfman McInnes     if (idxm[i] >= rstart && idxm[i] < rend) {
159b49de8d1SLois Curfman McInnes       row = idxm[i] - rstart;
160b49de8d1SLois Curfman McInnes       for (j=0; j<n; j++) {
161e32f2f54SBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); */
162e7e72b3dSBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large");
163b49de8d1SLois Curfman McInnes         ierr = MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j);CHKERRQ(ierr);
164b49de8d1SLois Curfman McInnes       }
165e7e72b3dSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
1668965ea79SLois Curfman McInnes   }
1673a40ed3dSBarry Smith   PetscFunctionReturn(0);
1688965ea79SLois Curfman McInnes }
1698965ea79SLois Curfman McInnes 
17049a6ff4bSBarry Smith static PetscErrorCode MatDenseGetLDA_MPIDense(Mat A,PetscInt *lda)
17149a6ff4bSBarry Smith {
17249a6ff4bSBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
17349a6ff4bSBarry Smith   PetscErrorCode ierr;
17449a6ff4bSBarry Smith 
17549a6ff4bSBarry Smith   PetscFunctionBegin;
17649a6ff4bSBarry Smith   ierr = MatDenseGetLDA(a->A,lda);CHKERRQ(ierr);
17749a6ff4bSBarry Smith   PetscFunctionReturn(0);
17849a6ff4bSBarry Smith }
17949a6ff4bSBarry Smith 
180ad16ce7aSStefano Zampini static PetscErrorCode MatDenseSetLDA_MPIDense(Mat A,PetscInt lda)
181ad16ce7aSStefano Zampini {
182ad16ce7aSStefano Zampini   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
18317359960SJose E. Roman   PetscBool      iscuda;
184ad16ce7aSStefano Zampini   PetscErrorCode ierr;
185ad16ce7aSStefano Zampini 
186ad16ce7aSStefano Zampini   PetscFunctionBegin;
18717359960SJose E. Roman   if (!a->A) {
18817359960SJose E. Roman     if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first");
18917359960SJose E. Roman     ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr);
19017359960SJose E. Roman     ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr);
19117359960SJose E. Roman     ierr = MatCreate(PETSC_COMM_SELF,&a->A);CHKERRQ(ierr);
19217359960SJose E. Roman     ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)a->A);CHKERRQ(ierr);
19317359960SJose E. Roman     ierr = MatSetSizes(a->A,A->rmap->n,A->cmap->N,A->rmap->n,A->cmap->N);CHKERRQ(ierr);
19417359960SJose E. Roman     ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIDENSECUDA,&iscuda);CHKERRQ(ierr);
19517359960SJose E. Roman     ierr = MatSetType(a->A,iscuda ? MATSEQDENSECUDA : MATSEQDENSE);CHKERRQ(ierr);
19617359960SJose E. Roman   }
197ad16ce7aSStefano Zampini   ierr = MatDenseSetLDA(a->A,lda);CHKERRQ(ierr);
198ad16ce7aSStefano Zampini   PetscFunctionReturn(0);
199ad16ce7aSStefano Zampini }
200ad16ce7aSStefano Zampini 
201637a0070SStefano Zampini static PetscErrorCode MatDenseGetArray_MPIDense(Mat A,PetscScalar **array)
202ff14e315SSatish Balay {
203ff14e315SSatish Balay   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
204dfbe8321SBarry Smith   PetscErrorCode ierr;
205ff14e315SSatish Balay 
2063a40ed3dSBarry Smith   PetscFunctionBegin;
207616b8fbbSStefano Zampini   if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first");
2088c778c55SBarry Smith   ierr = MatDenseGetArray(a->A,array);CHKERRQ(ierr);
2093a40ed3dSBarry Smith   PetscFunctionReturn(0);
210ff14e315SSatish Balay }
211ff14e315SSatish Balay 
212637a0070SStefano Zampini static PetscErrorCode MatDenseGetArrayRead_MPIDense(Mat A,const PetscScalar **array)
2138572280aSBarry Smith {
2148572280aSBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
2158572280aSBarry Smith   PetscErrorCode ierr;
2168572280aSBarry Smith 
2178572280aSBarry Smith   PetscFunctionBegin;
218616b8fbbSStefano Zampini   if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first");
2198572280aSBarry Smith   ierr = MatDenseGetArrayRead(a->A,array);CHKERRQ(ierr);
2208572280aSBarry Smith   PetscFunctionReturn(0);
2218572280aSBarry Smith }
2228572280aSBarry Smith 
2236947451fSStefano Zampini static PetscErrorCode MatDenseGetArrayWrite_MPIDense(Mat A,PetscScalar **array)
2246947451fSStefano Zampini {
2256947451fSStefano Zampini   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
2266947451fSStefano Zampini   PetscErrorCode ierr;
2276947451fSStefano Zampini 
2286947451fSStefano Zampini   PetscFunctionBegin;
229616b8fbbSStefano Zampini   if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first");
2306947451fSStefano Zampini   ierr = MatDenseGetArrayWrite(a->A,array);CHKERRQ(ierr);
2316947451fSStefano Zampini   PetscFunctionReturn(0);
2326947451fSStefano Zampini }
2336947451fSStefano Zampini 
234637a0070SStefano Zampini static PetscErrorCode MatDensePlaceArray_MPIDense(Mat A,const PetscScalar *array)
235d3042a70SBarry Smith {
236d3042a70SBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
237d3042a70SBarry Smith   PetscErrorCode ierr;
238d3042a70SBarry Smith 
239d3042a70SBarry Smith   PetscFunctionBegin;
240616b8fbbSStefano Zampini   if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first");
241616b8fbbSStefano Zampini   if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first");
242d3042a70SBarry Smith   ierr = MatDensePlaceArray(a->A,array);CHKERRQ(ierr);
243d3042a70SBarry Smith   PetscFunctionReturn(0);
244d3042a70SBarry Smith }
245d3042a70SBarry Smith 
246d3042a70SBarry Smith static PetscErrorCode MatDenseResetArray_MPIDense(Mat A)
247d3042a70SBarry Smith {
248d3042a70SBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
249d3042a70SBarry Smith   PetscErrorCode ierr;
250d3042a70SBarry Smith 
251d3042a70SBarry Smith   PetscFunctionBegin;
252616b8fbbSStefano Zampini   if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first");
253616b8fbbSStefano Zampini   if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first");
254d3042a70SBarry Smith   ierr = MatDenseResetArray(a->A);CHKERRQ(ierr);
255d3042a70SBarry Smith   PetscFunctionReturn(0);
256d3042a70SBarry Smith }
257d3042a70SBarry Smith 
258d5ea218eSStefano Zampini static PetscErrorCode MatDenseReplaceArray_MPIDense(Mat A,const PetscScalar *array)
259d5ea218eSStefano Zampini {
260d5ea218eSStefano Zampini   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
261d5ea218eSStefano Zampini   PetscErrorCode ierr;
262d5ea218eSStefano Zampini 
263d5ea218eSStefano Zampini   PetscFunctionBegin;
264616b8fbbSStefano Zampini   if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first");
265616b8fbbSStefano Zampini   if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first");
266d5ea218eSStefano Zampini   ierr = MatDenseReplaceArray(a->A,array);CHKERRQ(ierr);
267d5ea218eSStefano Zampini   PetscFunctionReturn(0);
268d5ea218eSStefano Zampini }
269d5ea218eSStefano Zampini 
2707dae84e0SHong Zhang static PetscErrorCode MatCreateSubMatrix_MPIDense(Mat A,IS isrow,IS iscol,MatReuse scall,Mat *B)
271ca3fa75bSLois Curfman McInnes {
272ca3fa75bSLois Curfman McInnes   Mat_MPIDense      *mat  = (Mat_MPIDense*)A->data,*newmatd;
2736849ba73SBarry Smith   PetscErrorCode    ierr;
274637a0070SStefano Zampini   PetscInt          lda,i,j,rstart,rend,nrows,ncols,Ncols,nlrows,nlcols;
2755d0c19d7SBarry Smith   const PetscInt    *irow,*icol;
276637a0070SStefano Zampini   const PetscScalar *v;
277637a0070SStefano Zampini   PetscScalar       *bv;
278ca3fa75bSLois Curfman McInnes   Mat               newmat;
2794aa3045dSJed Brown   IS                iscol_local;
28042a884f0SBarry Smith   MPI_Comm          comm_is,comm_mat;
281ca3fa75bSLois Curfman McInnes 
282ca3fa75bSLois Curfman McInnes   PetscFunctionBegin;
28342a884f0SBarry Smith   ierr = PetscObjectGetComm((PetscObject)A,&comm_mat);CHKERRQ(ierr);
28442a884f0SBarry Smith   ierr = PetscObjectGetComm((PetscObject)iscol,&comm_is);CHKERRQ(ierr);
28542a884f0SBarry Smith   if (comm_mat != comm_is) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NOTSAMECOMM,"IS communicator must match matrix communicator");
28642a884f0SBarry Smith 
2874aa3045dSJed Brown   ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr);
288ca3fa75bSLois Curfman McInnes   ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr);
2894aa3045dSJed Brown   ierr = ISGetIndices(iscol_local,&icol);CHKERRQ(ierr);
290b9b97703SBarry Smith   ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr);
291b9b97703SBarry Smith   ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr);
2924aa3045dSJed Brown   ierr = ISGetSize(iscol,&Ncols);CHKERRQ(ierr); /* global number of columns, size of iscol_local */
293ca3fa75bSLois Curfman McInnes 
294ca3fa75bSLois Curfman McInnes   /* No parallel redistribution currently supported! Should really check each index set
2957eba5e9cSLois Curfman McInnes      to comfirm that it is OK.  ... Currently supports only submatrix same partitioning as
2967eba5e9cSLois Curfman McInnes      original matrix! */
297ca3fa75bSLois Curfman McInnes 
298ca3fa75bSLois Curfman McInnes   ierr = MatGetLocalSize(A,&nlrows,&nlcols);CHKERRQ(ierr);
2997eba5e9cSLois Curfman McInnes   ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr);
300ca3fa75bSLois Curfman McInnes 
301ca3fa75bSLois Curfman McInnes   /* Check submatrix call */
302ca3fa75bSLois Curfman McInnes   if (scall == MAT_REUSE_MATRIX) {
303e32f2f54SBarry Smith     /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */
3047eba5e9cSLois Curfman McInnes     /* Really need to test rows and column sizes! */
305ca3fa75bSLois Curfman McInnes     newmat = *B;
306ca3fa75bSLois Curfman McInnes   } else {
307ca3fa75bSLois Curfman McInnes     /* Create and fill new matrix */
308ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)A),&newmat);CHKERRQ(ierr);
3094aa3045dSJed Brown     ierr = MatSetSizes(newmat,nrows,ncols,PETSC_DECIDE,Ncols);CHKERRQ(ierr);
3107adad957SLisandro Dalcin     ierr = MatSetType(newmat,((PetscObject)A)->type_name);CHKERRQ(ierr);
3110298fd71SBarry Smith     ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr);
312ca3fa75bSLois Curfman McInnes   }
313ca3fa75bSLois Curfman McInnes 
314ca3fa75bSLois Curfman McInnes   /* Now extract the data pointers and do the copy, column at a time */
315ca3fa75bSLois Curfman McInnes   newmatd = (Mat_MPIDense*)newmat->data;
316637a0070SStefano Zampini   ierr = MatDenseGetArray(newmatd->A,&bv);CHKERRQ(ierr);
317637a0070SStefano Zampini   ierr = MatDenseGetArrayRead(mat->A,&v);CHKERRQ(ierr);
318637a0070SStefano Zampini   ierr = MatDenseGetLDA(mat->A,&lda);CHKERRQ(ierr);
3194aa3045dSJed Brown   for (i=0; i<Ncols; i++) {
320637a0070SStefano Zampini     const PetscScalar *av = v + lda*icol[i];
321ca3fa75bSLois Curfman McInnes     for (j=0; j<nrows; j++) {
3227eba5e9cSLois Curfman McInnes       *bv++ = av[irow[j] - rstart];
323ca3fa75bSLois Curfman McInnes     }
324ca3fa75bSLois Curfman McInnes   }
325637a0070SStefano Zampini   ierr = MatDenseRestoreArrayRead(mat->A,&v);CHKERRQ(ierr);
326637a0070SStefano Zampini   ierr = MatDenseRestoreArray(newmatd->A,&bv);CHKERRQ(ierr);
327ca3fa75bSLois Curfman McInnes 
328ca3fa75bSLois Curfman McInnes   /* Assemble the matrices so that the correct flags are set */
329ca3fa75bSLois Curfman McInnes   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
330ca3fa75bSLois Curfman McInnes   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
331ca3fa75bSLois Curfman McInnes 
332ca3fa75bSLois Curfman McInnes   /* Free work space */
333ca3fa75bSLois Curfman McInnes   ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr);
3345bdf786aSShri Abhyankar   ierr = ISRestoreIndices(iscol_local,&icol);CHKERRQ(ierr);
33532bb1f2dSLisandro Dalcin   ierr = ISDestroy(&iscol_local);CHKERRQ(ierr);
336ca3fa75bSLois Curfman McInnes   *B   = newmat;
337ca3fa75bSLois Curfman McInnes   PetscFunctionReturn(0);
338ca3fa75bSLois Curfman McInnes }
339ca3fa75bSLois Curfman McInnes 
340637a0070SStefano Zampini PetscErrorCode MatDenseRestoreArray_MPIDense(Mat A,PetscScalar **array)
341ff14e315SSatish Balay {
34273a71a0fSBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
34373a71a0fSBarry Smith   PetscErrorCode ierr;
34473a71a0fSBarry Smith 
3453a40ed3dSBarry Smith   PetscFunctionBegin;
3468c778c55SBarry Smith   ierr = MatDenseRestoreArray(a->A,array);CHKERRQ(ierr);
3473a40ed3dSBarry Smith   PetscFunctionReturn(0);
348ff14e315SSatish Balay }
349ff14e315SSatish Balay 
350637a0070SStefano Zampini PetscErrorCode MatDenseRestoreArrayRead_MPIDense(Mat A,const PetscScalar **array)
3518572280aSBarry Smith {
3528572280aSBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
3538572280aSBarry Smith   PetscErrorCode ierr;
3548572280aSBarry Smith 
3558572280aSBarry Smith   PetscFunctionBegin;
3568572280aSBarry Smith   ierr = MatDenseRestoreArrayRead(a->A,array);CHKERRQ(ierr);
3578572280aSBarry Smith   PetscFunctionReturn(0);
3588572280aSBarry Smith }
3598572280aSBarry Smith 
3606947451fSStefano Zampini PetscErrorCode MatDenseRestoreArrayWrite_MPIDense(Mat A,PetscScalar **array)
3616947451fSStefano Zampini {
3626947451fSStefano Zampini   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
3636947451fSStefano Zampini   PetscErrorCode ierr;
3646947451fSStefano Zampini 
3656947451fSStefano Zampini   PetscFunctionBegin;
3666947451fSStefano Zampini   ierr = MatDenseRestoreArrayWrite(a->A,array);CHKERRQ(ierr);
3676947451fSStefano Zampini   PetscFunctionReturn(0);
3686947451fSStefano Zampini }
3696947451fSStefano Zampini 
370dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode)
3718965ea79SLois Curfman McInnes {
37239ddd567SLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
373dfbe8321SBarry Smith   PetscErrorCode ierr;
37413f74950SBarry Smith   PetscInt       nstash,reallocs;
3758965ea79SLois Curfman McInnes 
3763a40ed3dSBarry Smith   PetscFunctionBegin;
3774067683fSStefano Zampini   if (mdn->donotstash || mat->nooffprocentries) PetscFunctionReturn(0);
3788965ea79SLois Curfman McInnes 
379d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
3808798bf22SSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
381ae15b995SBarry Smith   ierr = PetscInfo2(mdn->A,"Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
3823a40ed3dSBarry Smith   PetscFunctionReturn(0);
3838965ea79SLois Curfman McInnes }
3848965ea79SLois Curfman McInnes 
385dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode)
3868965ea79SLois Curfman McInnes {
38739ddd567SLois Curfman McInnes   Mat_MPIDense   *mdn=(Mat_MPIDense*)mat->data;
3886849ba73SBarry Smith   PetscErrorCode ierr;
38913f74950SBarry Smith   PetscInt       i,*row,*col,flg,j,rstart,ncols;
39013f74950SBarry Smith   PetscMPIInt    n;
39187828ca2SBarry Smith   PetscScalar    *val;
3928965ea79SLois Curfman McInnes 
3933a40ed3dSBarry Smith   PetscFunctionBegin;
394910cf402Sprj-   if (!mdn->donotstash && !mat->nooffprocentries) {
3958965ea79SLois Curfman McInnes     /*  wait on receives */
3967ef1d9bdSSatish Balay     while (1) {
3978798bf22SSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
3987ef1d9bdSSatish Balay       if (!flg) break;
3998965ea79SLois Curfman McInnes 
4007ef1d9bdSSatish Balay       for (i=0; i<n;) {
4017ef1d9bdSSatish Balay         /* Now identify the consecutive vals belonging to the same row */
4022205254eSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
4032205254eSKarl Rupp           if (row[j] != rstart) break;
4042205254eSKarl Rupp         }
4057ef1d9bdSSatish Balay         if (j < n) ncols = j-i;
4067ef1d9bdSSatish Balay         else       ncols = n-i;
4077ef1d9bdSSatish Balay         /* Now assemble all these values with a single function call */
4084b4eb8d3SJed Brown         ierr = MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr);
4097ef1d9bdSSatish Balay         i    = j;
4108965ea79SLois Curfman McInnes       }
4117ef1d9bdSSatish Balay     }
4128798bf22SSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
413910cf402Sprj-   }
4148965ea79SLois Curfman McInnes 
41539ddd567SLois Curfman McInnes   ierr = MatAssemblyBegin(mdn->A,mode);CHKERRQ(ierr);
41639ddd567SLois Curfman McInnes   ierr = MatAssemblyEnd(mdn->A,mode);CHKERRQ(ierr);
4178965ea79SLois Curfman McInnes 
4186d4a8577SBarry Smith   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
41939ddd567SLois Curfman McInnes     ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr);
4208965ea79SLois Curfman McInnes   }
4213a40ed3dSBarry Smith   PetscFunctionReturn(0);
4228965ea79SLois Curfman McInnes }
4238965ea79SLois Curfman McInnes 
424dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIDense(Mat A)
4258965ea79SLois Curfman McInnes {
426dfbe8321SBarry Smith   PetscErrorCode ierr;
42739ddd567SLois Curfman McInnes   Mat_MPIDense   *l = (Mat_MPIDense*)A->data;
4283a40ed3dSBarry Smith 
4293a40ed3dSBarry Smith   PetscFunctionBegin;
4303a40ed3dSBarry Smith   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
4313a40ed3dSBarry Smith   PetscFunctionReturn(0);
4328965ea79SLois Curfman McInnes }
4338965ea79SLois Curfman McInnes 
434637a0070SStefano Zampini PetscErrorCode MatZeroRows_MPIDense(Mat A,PetscInt n,const PetscInt rows[],PetscScalar diag,Vec x,Vec b)
4358965ea79SLois Curfman McInnes {
43639ddd567SLois Curfman McInnes   Mat_MPIDense      *l = (Mat_MPIDense*)A->data;
4376849ba73SBarry Smith   PetscErrorCode    ierr;
438637a0070SStefano Zampini   PetscInt          i,len,*lrows;
439637a0070SStefano Zampini 
440637a0070SStefano Zampini   PetscFunctionBegin;
441637a0070SStefano Zampini   /* get locally owned rows */
442637a0070SStefano Zampini   ierr = PetscLayoutMapLocal(A->rmap,n,rows,&len,&lrows,NULL);CHKERRQ(ierr);
443637a0070SStefano Zampini   /* fix right hand side if needed */
444637a0070SStefano Zampini   if (x && b) {
44597b48c8fSBarry Smith     const PetscScalar *xx;
44697b48c8fSBarry Smith     PetscScalar       *bb;
4478965ea79SLois Curfman McInnes 
44897b48c8fSBarry Smith     ierr = VecGetArrayRead(x, &xx);CHKERRQ(ierr);
449637a0070SStefano Zampini     ierr = VecGetArrayWrite(b, &bb);CHKERRQ(ierr);
450637a0070SStefano Zampini     for (i=0;i<len;++i) bb[lrows[i]] = diag*xx[lrows[i]];
45197b48c8fSBarry Smith     ierr = VecRestoreArrayRead(x, &xx);CHKERRQ(ierr);
452637a0070SStefano Zampini     ierr = VecRestoreArrayWrite(b, &bb);CHKERRQ(ierr);
45397b48c8fSBarry Smith   }
454637a0070SStefano Zampini   ierr = MatZeroRows(l->A,len,lrows,0.0,NULL,NULL);CHKERRQ(ierr);
455e2eb51b1SBarry Smith   if (diag != 0.0) {
456637a0070SStefano Zampini     Vec d;
457b9679d65SBarry Smith 
458637a0070SStefano Zampini     ierr = MatCreateVecs(A,NULL,&d);CHKERRQ(ierr);
459637a0070SStefano Zampini     ierr = VecSet(d,diag);CHKERRQ(ierr);
460637a0070SStefano Zampini     ierr = MatDiagonalSet(A,d,INSERT_VALUES);CHKERRQ(ierr);
461637a0070SStefano Zampini     ierr = VecDestroy(&d);CHKERRQ(ierr);
462b9679d65SBarry Smith   }
463606d414cSSatish Balay   ierr = PetscFree(lrows);CHKERRQ(ierr);
4643a40ed3dSBarry Smith   PetscFunctionReturn(0);
4658965ea79SLois Curfman McInnes }
4668965ea79SLois Curfman McInnes 
467cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMult_SeqDense(Mat,Vec,Vec);
468cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultAdd_SeqDense(Mat,Vec,Vec,Vec);
469cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTranspose_SeqDense(Mat,Vec,Vec);
470cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTransposeAdd_SeqDense(Mat,Vec,Vec,Vec);
471cc2e6a90SBarry Smith 
472dfbe8321SBarry Smith PetscErrorCode MatMult_MPIDense(Mat mat,Vec xx,Vec yy)
4738965ea79SLois Curfman McInnes {
47439ddd567SLois Curfman McInnes   Mat_MPIDense      *mdn = (Mat_MPIDense*)mat->data;
475dfbe8321SBarry Smith   PetscErrorCode    ierr;
476637a0070SStefano Zampini   const PetscScalar *ax;
477637a0070SStefano Zampini   PetscScalar       *ay;
478d0295fc0SJunchao Zhang   PetscMemType      axmtype,aymtype;
479c456f294SBarry Smith 
4803a40ed3dSBarry Smith   PetscFunctionBegin;
481a256111fSJunchao Zhang   ierr = VecGetArrayReadAndMemType(xx,&ax,&axmtype);CHKERRQ(ierr);
482a256111fSJunchao Zhang   ierr = VecGetArrayAndMemType(mdn->lvec,&ay,&aymtype);CHKERRQ(ierr);
483ad227feaSJunchao Zhang   ierr = PetscSFBcastWithMemTypeBegin(mdn->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPI_REPLACE);CHKERRQ(ierr);
484ad227feaSJunchao Zhang   ierr = PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ax,ay,MPI_REPLACE);CHKERRQ(ierr);
485a256111fSJunchao Zhang   ierr = VecRestoreArrayAndMemType(mdn->lvec,&ay);CHKERRQ(ierr);
486a256111fSJunchao Zhang   ierr = VecRestoreArrayReadAndMemType(xx,&ax);CHKERRQ(ierr);
487637a0070SStefano Zampini   ierr = (*mdn->A->ops->mult)(mdn->A,mdn->lvec,yy);CHKERRQ(ierr);
4883a40ed3dSBarry Smith   PetscFunctionReturn(0);
4898965ea79SLois Curfman McInnes }
4908965ea79SLois Curfman McInnes 
491dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz)
4928965ea79SLois Curfman McInnes {
49339ddd567SLois Curfman McInnes   Mat_MPIDense      *mdn = (Mat_MPIDense*)mat->data;
494dfbe8321SBarry Smith   PetscErrorCode    ierr;
495637a0070SStefano Zampini   const PetscScalar *ax;
496637a0070SStefano Zampini   PetscScalar       *ay;
497d0295fc0SJunchao Zhang   PetscMemType      axmtype,aymtype;
498c456f294SBarry Smith 
4993a40ed3dSBarry Smith   PetscFunctionBegin;
500a256111fSJunchao Zhang   ierr = VecGetArrayReadAndMemType(xx,&ax,&axmtype);CHKERRQ(ierr);
501a256111fSJunchao Zhang   ierr = VecGetArrayAndMemType(mdn->lvec,&ay,&aymtype);CHKERRQ(ierr);
502ad227feaSJunchao Zhang   ierr = PetscSFBcastWithMemTypeBegin(mdn->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPI_REPLACE);CHKERRQ(ierr);
503ad227feaSJunchao Zhang   ierr = PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ax,ay,MPI_REPLACE);CHKERRQ(ierr);
504a256111fSJunchao Zhang   ierr = VecRestoreArrayAndMemType(mdn->lvec,&ay);CHKERRQ(ierr);
505a256111fSJunchao Zhang   ierr = VecRestoreArrayReadAndMemType(xx,&ax);CHKERRQ(ierr);
506637a0070SStefano Zampini   ierr = (*mdn->A->ops->multadd)(mdn->A,mdn->lvec,yy,zz);CHKERRQ(ierr);
5073a40ed3dSBarry Smith   PetscFunctionReturn(0);
5088965ea79SLois Curfman McInnes }
5098965ea79SLois Curfman McInnes 
510dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIDense(Mat A,Vec xx,Vec yy)
511096963f5SLois Curfman McInnes {
512096963f5SLois Curfman McInnes   Mat_MPIDense      *a = (Mat_MPIDense*)A->data;
513dfbe8321SBarry Smith   PetscErrorCode    ierr;
514637a0070SStefano Zampini   const PetscScalar *ax;
515637a0070SStefano Zampini   PetscScalar       *ay;
516d0295fc0SJunchao Zhang   PetscMemType      axmtype,aymtype;
517096963f5SLois Curfman McInnes 
5183a40ed3dSBarry Smith   PetscFunctionBegin;
519637a0070SStefano Zampini   ierr = VecSet(yy,0.0);CHKERRQ(ierr);
520637a0070SStefano Zampini   ierr = (*a->A->ops->multtranspose)(a->A,xx,a->lvec);CHKERRQ(ierr);
521a256111fSJunchao Zhang   ierr = VecGetArrayReadAndMemType(a->lvec,&ax,&axmtype);CHKERRQ(ierr);
522a256111fSJunchao Zhang   ierr = VecGetArrayAndMemType(yy,&ay,&aymtype);CHKERRQ(ierr);
523d0295fc0SJunchao Zhang   ierr = PetscSFReduceWithMemTypeBegin(a->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPIU_SUM);CHKERRQ(ierr);
524637a0070SStefano Zampini   ierr = PetscSFReduceEnd(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM);CHKERRQ(ierr);
525a256111fSJunchao Zhang   ierr = VecRestoreArrayReadAndMemType(a->lvec,&ax);CHKERRQ(ierr);
526a256111fSJunchao Zhang   ierr = VecRestoreArrayAndMemType(yy,&ay);CHKERRQ(ierr);
5273a40ed3dSBarry Smith   PetscFunctionReturn(0);
528096963f5SLois Curfman McInnes }
529096963f5SLois Curfman McInnes 
530dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz)
531096963f5SLois Curfman McInnes {
532096963f5SLois Curfman McInnes   Mat_MPIDense      *a = (Mat_MPIDense*)A->data;
533dfbe8321SBarry Smith   PetscErrorCode    ierr;
534637a0070SStefano Zampini   const PetscScalar *ax;
535637a0070SStefano Zampini   PetscScalar       *ay;
536d0295fc0SJunchao Zhang   PetscMemType      axmtype,aymtype;
537096963f5SLois Curfman McInnes 
5383a40ed3dSBarry Smith   PetscFunctionBegin;
5393501a2bdSLois Curfman McInnes   ierr = VecCopy(yy,zz);CHKERRQ(ierr);
540637a0070SStefano Zampini   ierr = (*a->A->ops->multtranspose)(a->A,xx,a->lvec);CHKERRQ(ierr);
541a256111fSJunchao Zhang   ierr = VecGetArrayReadAndMemType(a->lvec,&ax,&axmtype);CHKERRQ(ierr);
542a256111fSJunchao Zhang   ierr = VecGetArrayAndMemType(zz,&ay,&aymtype);CHKERRQ(ierr);
543d0295fc0SJunchao Zhang   ierr = PetscSFReduceWithMemTypeBegin(a->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPIU_SUM);CHKERRQ(ierr);
544637a0070SStefano Zampini   ierr = PetscSFReduceEnd(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM);CHKERRQ(ierr);
545a256111fSJunchao Zhang   ierr = VecRestoreArrayReadAndMemType(a->lvec,&ax);CHKERRQ(ierr);
546a256111fSJunchao Zhang   ierr = VecRestoreArrayAndMemType(zz,&ay);CHKERRQ(ierr);
5473a40ed3dSBarry Smith   PetscFunctionReturn(0);
548096963f5SLois Curfman McInnes }
549096963f5SLois Curfman McInnes 
550dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIDense(Mat A,Vec v)
5518965ea79SLois Curfman McInnes {
55239ddd567SLois Curfman McInnes   Mat_MPIDense      *a    = (Mat_MPIDense*)A->data;
553dfbe8321SBarry Smith   PetscErrorCode    ierr;
554637a0070SStefano Zampini   PetscInt          lda,len,i,n,m = A->rmap->n,radd;
55587828ca2SBarry Smith   PetscScalar       *x,zero = 0.0;
556637a0070SStefano Zampini   const PetscScalar *av;
557ed3cc1f0SBarry Smith 
5583a40ed3dSBarry Smith   PetscFunctionBegin;
5592dcb1b2aSMatthew Knepley   ierr = VecSet(v,zero);CHKERRQ(ierr);
5601ebc52fbSHong Zhang   ierr = VecGetArray(v,&x);CHKERRQ(ierr);
561096963f5SLois Curfman McInnes   ierr = VecGetSize(v,&n);CHKERRQ(ierr);
562e32f2f54SBarry Smith   if (n != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec");
563d0f46423SBarry Smith   len  = PetscMin(a->A->rmap->n,a->A->cmap->n);
564d0f46423SBarry Smith   radd = A->rmap->rstart*m;
565637a0070SStefano Zampini   ierr = MatDenseGetArrayRead(a->A,&av);CHKERRQ(ierr);
566637a0070SStefano Zampini   ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr);
56744cd7ae7SLois Curfman McInnes   for (i=0; i<len; i++) {
568637a0070SStefano Zampini     x[i] = av[radd + i*lda + i];
569096963f5SLois Curfman McInnes   }
570637a0070SStefano Zampini   ierr = MatDenseRestoreArrayRead(a->A,&av);CHKERRQ(ierr);
5711ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&x);CHKERRQ(ierr);
5723a40ed3dSBarry Smith   PetscFunctionReturn(0);
5738965ea79SLois Curfman McInnes }
5748965ea79SLois Curfman McInnes 
575dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIDense(Mat mat)
5768965ea79SLois Curfman McInnes {
5773501a2bdSLois Curfman McInnes   Mat_MPIDense   *mdn = (Mat_MPIDense*)mat->data;
578dfbe8321SBarry Smith   PetscErrorCode ierr;
579ed3cc1f0SBarry Smith 
5803a40ed3dSBarry Smith   PetscFunctionBegin;
581aa482453SBarry Smith #if defined(PETSC_USE_LOG)
582d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D, Cols=%D",mat->rmap->N,mat->cmap->N);
5838965ea79SLois Curfman McInnes #endif
5848798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
585616b8fbbSStefano Zampini   if (mdn->vecinuse) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first");
586616b8fbbSStefano Zampini   if (mdn->matinuse) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first");
5876bf464f9SBarry Smith   ierr = MatDestroy(&mdn->A);CHKERRQ(ierr);
5886bf464f9SBarry Smith   ierr = VecDestroy(&mdn->lvec);CHKERRQ(ierr);
589637a0070SStefano Zampini   ierr = PetscSFDestroy(&mdn->Mvctx);CHKERRQ(ierr);
5906947451fSStefano Zampini   ierr = VecDestroy(&mdn->cvec);CHKERRQ(ierr);
5915ea7661aSPierre Jolivet   ierr = MatDestroy(&mdn->cmat);CHKERRQ(ierr);
59201b82886SBarry Smith 
593bf0cc555SLisandro Dalcin   ierr = PetscFree(mat->data);CHKERRQ(ierr);
594f4259b30SLisandro Dalcin   ierr = PetscObjectChangeTypeName((PetscObject)mat,NULL);CHKERRQ(ierr);
5958baccfbdSHong Zhang 
59649a6ff4bSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",NULL);CHKERRQ(ierr);
597ad16ce7aSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseSetLDA_C",NULL);CHKERRQ(ierr);
5988baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",NULL);CHKERRQ(ierr);
5998572280aSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",NULL);CHKERRQ(ierr);
6008572280aSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",NULL);CHKERRQ(ierr);
6018572280aSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",NULL);CHKERRQ(ierr);
6026947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayWrite_C",NULL);CHKERRQ(ierr);
6036947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayWrite_C",NULL);CHKERRQ(ierr);
604d3042a70SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",NULL);CHKERRQ(ierr);
605d3042a70SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",NULL);CHKERRQ(ierr);
606d5ea218eSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseReplaceArray_C",NULL);CHKERRQ(ierr);
6074e29119aSPierre Jolivet   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpiaij_mpidense_C",NULL);CHKERRQ(ierr);
6084e29119aSPierre Jolivet   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_mpiaij_C",NULL);CHKERRQ(ierr);
6098baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
6108baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",NULL);CHKERRQ(ierr);
6118baccfbdSHong Zhang #endif
612d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
613d24d4204SJose E. Roman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_scalapack_C",NULL);CHKERRQ(ierr);
614d24d4204SJose E. Roman #endif
615bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",NULL);CHKERRQ(ierr);
6164222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaij_mpidense_C",NULL);CHKERRQ(ierr);
6174222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaij_C",NULL);CHKERRQ(ierr);
6186718818eSStefano Zampini #if defined (PETSC_HAVE_CUDA)
6196718818eSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaijcusparse_mpidense_C",NULL);CHKERRQ(ierr);
6206718818eSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaijcusparse_C",NULL);CHKERRQ(ierr);
6216718818eSStefano Zampini #endif
62286aefd0dSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",NULL);CHKERRQ(ierr);
62386aefd0dSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",NULL);CHKERRQ(ierr);
6246947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",NULL);CHKERRQ(ierr);
6256947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",NULL);CHKERRQ(ierr);
6266947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",NULL);CHKERRQ(ierr);
6276947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",NULL);CHKERRQ(ierr);
6286947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",NULL);CHKERRQ(ierr);
6296947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",NULL);CHKERRQ(ierr);
6305ea7661aSPierre Jolivet   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetSubMatrix_C",NULL);CHKERRQ(ierr);
6315ea7661aSPierre Jolivet   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreSubMatrix_C",NULL);CHKERRQ(ierr);
6323a40ed3dSBarry Smith   PetscFunctionReturn(0);
6338965ea79SLois Curfman McInnes }
63439ddd567SLois Curfman McInnes 
63552c5f739Sprj- PETSC_INTERN PetscErrorCode MatView_SeqDense(Mat,PetscViewer);
63652c5f739Sprj- 
6379804daf3SBarry Smith #include <petscdraw.h>
6386849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
6398965ea79SLois Curfman McInnes {
64039ddd567SLois Curfman McInnes   Mat_MPIDense      *mdn = (Mat_MPIDense*)mat->data;
641dfbe8321SBarry Smith   PetscErrorCode    ierr;
642616b8fbbSStefano Zampini   PetscMPIInt       rank;
64319fd82e9SBarry Smith   PetscViewerType   vtype;
644ace3abfcSBarry Smith   PetscBool         iascii,isdraw;
645b0a32e0cSBarry Smith   PetscViewer       sviewer;
646f3ef73ceSBarry Smith   PetscViewerFormat format;
6478965ea79SLois Curfman McInnes 
6483a40ed3dSBarry Smith   PetscFunctionBegin;
649ffc4695bSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRMPI(ierr);
650251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
651251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
65232077d6dSBarry Smith   if (iascii) {
653b0a32e0cSBarry Smith     ierr = PetscViewerGetType(viewer,&vtype);CHKERRQ(ierr);
654b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
655456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
6564e220ebcSLois Curfman McInnes       MatInfo info;
657888f2ed8SSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
6581575c14dSBarry Smith       ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr);
6597b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"  [%d] local rows %D nz %D nz alloced %D mem %D \n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory);CHKERRQ(ierr);
660b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
6611575c14dSBarry Smith       ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr);
662637a0070SStefano Zampini       ierr = PetscSFView(mdn->Mvctx,viewer);CHKERRQ(ierr);
6633a40ed3dSBarry Smith       PetscFunctionReturn(0);
664fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
6653a40ed3dSBarry Smith       PetscFunctionReturn(0);
6668965ea79SLois Curfman McInnes     }
667f1af5d2fSBarry Smith   } else if (isdraw) {
668b0a32e0cSBarry Smith     PetscDraw draw;
669ace3abfcSBarry Smith     PetscBool isnull;
670f1af5d2fSBarry Smith 
671b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
672b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr);
673f1af5d2fSBarry Smith     if (isnull) PetscFunctionReturn(0);
674f1af5d2fSBarry Smith   }
67577ed5343SBarry Smith 
6767da1fb6eSBarry Smith   {
6778965ea79SLois Curfman McInnes     /* assemble the entire matrix onto first processor. */
6788965ea79SLois Curfman McInnes     Mat         A;
679d0f46423SBarry Smith     PetscInt    M = mat->rmap->N,N = mat->cmap->N,m,row,i,nz;
680ba8c8a56SBarry Smith     PetscInt    *cols;
681ba8c8a56SBarry Smith     PetscScalar *vals;
6828965ea79SLois Curfman McInnes 
683ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr);
6848965ea79SLois Curfman McInnes     if (!rank) {
685f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
6863a40ed3dSBarry Smith     } else {
687f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
6888965ea79SLois Curfman McInnes     }
6897adad957SLisandro Dalcin     /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */
690878740d9SKris Buschelman     ierr = MatSetType(A,MATMPIDENSE);CHKERRQ(ierr);
6910298fd71SBarry Smith     ierr = MatMPIDenseSetPreallocation(A,NULL);CHKERRQ(ierr);
6923bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr);
6938965ea79SLois Curfman McInnes 
69439ddd567SLois Curfman McInnes     /* Copy the matrix ... This isn't the most efficient means,
69539ddd567SLois Curfman McInnes        but it's quick for now */
69651022da4SBarry Smith     A->insertmode = INSERT_VALUES;
6972205254eSKarl Rupp 
6982205254eSKarl Rupp     row = mat->rmap->rstart;
6992205254eSKarl Rupp     m   = mdn->A->rmap->n;
7008965ea79SLois Curfman McInnes     for (i=0; i<m; i++) {
701ba8c8a56SBarry Smith       ierr = MatGetRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr);
702ba8c8a56SBarry Smith       ierr = MatSetValues_MPIDense(A,1,&row,nz,cols,vals,INSERT_VALUES);CHKERRQ(ierr);
703ba8c8a56SBarry Smith       ierr = MatRestoreRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr);
70439ddd567SLois Curfman McInnes       row++;
7058965ea79SLois Curfman McInnes     }
7068965ea79SLois Curfman McInnes 
7076d4a8577SBarry Smith     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
7086d4a8577SBarry Smith     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
7093f08860eSBarry Smith     ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr);
710b9b97703SBarry Smith     if (!rank) {
7111a9d3c3cSBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPIDense*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr);
7127da1fb6eSBarry Smith       ierr = MatView_SeqDense(((Mat_MPIDense*)(A->data))->A,sviewer);CHKERRQ(ierr);
7138965ea79SLois Curfman McInnes     }
7143f08860eSBarry Smith     ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr);
715b0a32e0cSBarry Smith     ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
7166bf464f9SBarry Smith     ierr = MatDestroy(&A);CHKERRQ(ierr);
7178965ea79SLois Curfman McInnes   }
7183a40ed3dSBarry Smith   PetscFunctionReturn(0);
7198965ea79SLois Curfman McInnes }
7208965ea79SLois Curfman McInnes 
721dfbe8321SBarry Smith PetscErrorCode MatView_MPIDense(Mat mat,PetscViewer viewer)
7228965ea79SLois Curfman McInnes {
723dfbe8321SBarry Smith   PetscErrorCode ierr;
724ace3abfcSBarry Smith   PetscBool      iascii,isbinary,isdraw,issocket;
7258965ea79SLois Curfman McInnes 
726433994e6SBarry Smith   PetscFunctionBegin;
727251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
728251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
729251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr);
730251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
7310f5bd95cSBarry Smith 
73232077d6dSBarry Smith   if (iascii || issocket || isdraw) {
733f1af5d2fSBarry Smith     ierr = MatView_MPIDense_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
7340f5bd95cSBarry Smith   } else if (isbinary) {
7358491ab44SLisandro Dalcin     ierr = MatView_Dense_Binary(mat,viewer);CHKERRQ(ierr);
73611aeaf0aSBarry Smith   }
7373a40ed3dSBarry Smith   PetscFunctionReturn(0);
7388965ea79SLois Curfman McInnes }
7398965ea79SLois Curfman McInnes 
740dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info)
7418965ea79SLois Curfman McInnes {
7423501a2bdSLois Curfman McInnes   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
7433501a2bdSLois Curfman McInnes   Mat            mdn  = mat->A;
744dfbe8321SBarry Smith   PetscErrorCode ierr;
7453966268fSBarry Smith   PetscLogDouble isend[5],irecv[5];
7468965ea79SLois Curfman McInnes 
7473a40ed3dSBarry Smith   PetscFunctionBegin;
7484e220ebcSLois Curfman McInnes   info->block_size = 1.0;
7492205254eSKarl Rupp 
7504e220ebcSLois Curfman McInnes   ierr = MatGetInfo(mdn,MAT_LOCAL,info);CHKERRQ(ierr);
7512205254eSKarl Rupp 
7524e220ebcSLois Curfman McInnes   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
7534e220ebcSLois Curfman McInnes   isend[3] = info->memory;  isend[4] = info->mallocs;
7548965ea79SLois Curfman McInnes   if (flag == MAT_LOCAL) {
7554e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
7564e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
7574e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
7584e220ebcSLois Curfman McInnes     info->memory       = isend[3];
7594e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
7608965ea79SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_MAX) {
761820f2d46SBarry Smith     ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_MAX,PetscObjectComm((PetscObject)A));CHKERRMPI(ierr);
7622205254eSKarl Rupp 
7634e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
7644e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
7654e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
7664e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
7674e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
7688965ea79SLois Curfman McInnes   } else if (flag == MAT_GLOBAL_SUM) {
769820f2d46SBarry Smith     ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_SUM,PetscObjectComm((PetscObject)A));CHKERRMPI(ierr);
7702205254eSKarl Rupp 
7714e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
7724e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
7734e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
7744e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
7754e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
7768965ea79SLois Curfman McInnes   }
7774e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
7784e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
7794e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
7803a40ed3dSBarry Smith   PetscFunctionReturn(0);
7818965ea79SLois Curfman McInnes }
7828965ea79SLois Curfman McInnes 
783ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIDense(Mat A,MatOption op,PetscBool flg)
7848965ea79SLois Curfman McInnes {
78539ddd567SLois Curfman McInnes   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
786dfbe8321SBarry Smith   PetscErrorCode ierr;
7878965ea79SLois Curfman McInnes 
7883a40ed3dSBarry Smith   PetscFunctionBegin;
78912c028f9SKris Buschelman   switch (op) {
790512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
79112c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
79212c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
79343674050SBarry Smith     MatCheckPreallocated(A,1);
7944e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
79512c028f9SKris Buschelman     break;
79612c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
79743674050SBarry Smith     MatCheckPreallocated(A,1);
7984e0d8c25SBarry Smith     a->roworiented = flg;
7994e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
80012c028f9SKris Buschelman     break;
8018c78258cSHong Zhang   case MAT_FORCE_DIAGONAL_ENTRIES:
80213fa8e87SLisandro Dalcin   case MAT_KEEP_NONZERO_PATTERN:
80312c028f9SKris Buschelman   case MAT_USE_HASH_TABLE:
804071fcb05SBarry Smith   case MAT_SORTED_FULL:
805290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
80612c028f9SKris Buschelman     break;
80712c028f9SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
8084e0d8c25SBarry Smith     a->donotstash = flg;
80912c028f9SKris Buschelman     break;
81077e54ba9SKris Buschelman   case MAT_SYMMETRIC:
81177e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
8129a4540c5SBarry Smith   case MAT_HERMITIAN:
8139a4540c5SBarry Smith   case MAT_SYMMETRY_ETERNAL:
814600fe468SBarry Smith   case MAT_IGNORE_LOWER_TRIANGULAR:
8155d7aebe8SStefano Zampini   case MAT_IGNORE_ZERO_ENTRIES:
816290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
81777e54ba9SKris Buschelman     break;
81812c028f9SKris Buschelman   default:
819e32f2f54SBarry Smith     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %s",MatOptions[op]);
8203a40ed3dSBarry Smith   }
8213a40ed3dSBarry Smith   PetscFunctionReturn(0);
8228965ea79SLois Curfman McInnes }
8238965ea79SLois Curfman McInnes 
824dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIDense(Mat A,Vec ll,Vec rr)
8255b2fa520SLois Curfman McInnes {
8265b2fa520SLois Curfman McInnes   Mat_MPIDense      *mdn = (Mat_MPIDense*)A->data;
827637a0070SStefano Zampini   const PetscScalar *l;
828637a0070SStefano Zampini   PetscScalar       x,*v,*vv,*r;
829dfbe8321SBarry Smith   PetscErrorCode    ierr;
830637a0070SStefano Zampini   PetscInt          i,j,s2a,s3a,s2,s3,m=mdn->A->rmap->n,n=mdn->A->cmap->n,lda;
8315b2fa520SLois Curfman McInnes 
8325b2fa520SLois Curfman McInnes   PetscFunctionBegin;
833637a0070SStefano Zampini   ierr = MatDenseGetArray(mdn->A,&vv);CHKERRQ(ierr);
834637a0070SStefano Zampini   ierr = MatDenseGetLDA(mdn->A,&lda);CHKERRQ(ierr);
83572d926a5SLois Curfman McInnes   ierr = MatGetLocalSize(A,&s2,&s3);CHKERRQ(ierr);
8365b2fa520SLois Curfman McInnes   if (ll) {
83772d926a5SLois Curfman McInnes     ierr = VecGetLocalSize(ll,&s2a);CHKERRQ(ierr);
838637a0070SStefano Zampini     if (s2a != s2) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vector non-conforming local size, %D != %D", s2a, s2);
839bca11509SBarry Smith     ierr = VecGetArrayRead(ll,&l);CHKERRQ(ierr);
8405b2fa520SLois Curfman McInnes     for (i=0; i<m; i++) {
8415b2fa520SLois Curfman McInnes       x = l[i];
842637a0070SStefano Zampini       v = vv + i;
843637a0070SStefano Zampini       for (j=0; j<n; j++) { (*v) *= x; v+= lda;}
8445b2fa520SLois Curfman McInnes     }
845bca11509SBarry Smith     ierr = VecRestoreArrayRead(ll,&l);CHKERRQ(ierr);
846637a0070SStefano Zampini     ierr = PetscLogFlops(1.0*n*m);CHKERRQ(ierr);
8475b2fa520SLois Curfman McInnes   }
8485b2fa520SLois Curfman McInnes   if (rr) {
849637a0070SStefano Zampini     const PetscScalar *ar;
850637a0070SStefano Zampini 
851175be7b4SMatthew Knepley     ierr = VecGetLocalSize(rr,&s3a);CHKERRQ(ierr);
852e32f2f54SBarry Smith     if (s3a != s3) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vec non-conforming local size, %d != %d.", s3a, s3);
853637a0070SStefano Zampini     ierr = VecGetArrayRead(rr,&ar);CHKERRQ(ierr);
854637a0070SStefano Zampini     ierr = VecGetArray(mdn->lvec,&r);CHKERRQ(ierr);
855ad227feaSJunchao Zhang     ierr = PetscSFBcastBegin(mdn->Mvctx,MPIU_SCALAR,ar,r,MPI_REPLACE);CHKERRQ(ierr);
856ad227feaSJunchao Zhang     ierr = PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ar,r,MPI_REPLACE);CHKERRQ(ierr);
857637a0070SStefano Zampini     ierr = VecRestoreArrayRead(rr,&ar);CHKERRQ(ierr);
8585b2fa520SLois Curfman McInnes     for (i=0; i<n; i++) {
8595b2fa520SLois Curfman McInnes       x = r[i];
860637a0070SStefano Zampini       v = vv + i*lda;
8612205254eSKarl Rupp       for (j=0; j<m; j++) (*v++) *= x;
8625b2fa520SLois Curfman McInnes     }
863637a0070SStefano Zampini     ierr = VecRestoreArray(mdn->lvec,&r);CHKERRQ(ierr);
864637a0070SStefano Zampini     ierr = PetscLogFlops(1.0*n*m);CHKERRQ(ierr);
8655b2fa520SLois Curfman McInnes   }
866637a0070SStefano Zampini   ierr = MatDenseRestoreArray(mdn->A,&vv);CHKERRQ(ierr);
8675b2fa520SLois Curfman McInnes   PetscFunctionReturn(0);
8685b2fa520SLois Curfman McInnes }
8695b2fa520SLois Curfman McInnes 
870dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIDense(Mat A,NormType type,PetscReal *nrm)
871096963f5SLois Curfman McInnes {
8723501a2bdSLois Curfman McInnes   Mat_MPIDense      *mdn = (Mat_MPIDense*)A->data;
873dfbe8321SBarry Smith   PetscErrorCode    ierr;
87413f74950SBarry Smith   PetscInt          i,j;
875616b8fbbSStefano Zampini   PetscMPIInt       size;
876329f5518SBarry Smith   PetscReal         sum = 0.0;
877637a0070SStefano Zampini   const PetscScalar *av,*v;
8783501a2bdSLois Curfman McInnes 
8793a40ed3dSBarry Smith   PetscFunctionBegin;
880637a0070SStefano Zampini   ierr = MatDenseGetArrayRead(mdn->A,&av);CHKERRQ(ierr);
881637a0070SStefano Zampini   v    = av;
882ffc4695bSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRMPI(ierr);
883616b8fbbSStefano Zampini   if (size == 1) {
884064f8208SBarry Smith     ierr = MatNorm(mdn->A,type,nrm);CHKERRQ(ierr);
8853501a2bdSLois Curfman McInnes   } else {
8863501a2bdSLois Curfman McInnes     if (type == NORM_FROBENIUS) {
887d0f46423SBarry Smith       for (i=0; i<mdn->A->cmap->n*mdn->A->rmap->n; i++) {
888329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
8893501a2bdSLois Curfman McInnes       }
890820f2d46SBarry Smith       ierr = MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRMPI(ierr);
8918f1a2a5eSBarry Smith       *nrm = PetscSqrtReal(*nrm);
892dc0b31edSSatish Balay       ierr = PetscLogFlops(2.0*mdn->A->cmap->n*mdn->A->rmap->n);CHKERRQ(ierr);
8933a40ed3dSBarry Smith     } else if (type == NORM_1) {
894329f5518SBarry Smith       PetscReal *tmp,*tmp2;
895580bdb30SBarry Smith       ierr = PetscCalloc2(A->cmap->N,&tmp,A->cmap->N,&tmp2);CHKERRQ(ierr);
896064f8208SBarry Smith       *nrm = 0.0;
897637a0070SStefano Zampini       v    = av;
898d0f46423SBarry Smith       for (j=0; j<mdn->A->cmap->n; j++) {
899d0f46423SBarry Smith         for (i=0; i<mdn->A->rmap->n; i++) {
90067e560aaSBarry Smith           tmp[j] += PetscAbsScalar(*v);  v++;
9013501a2bdSLois Curfman McInnes         }
9023501a2bdSLois Curfman McInnes       }
903820f2d46SBarry Smith       ierr = MPIU_Allreduce(tmp,tmp2,A->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRMPI(ierr);
904d0f46423SBarry Smith       for (j=0; j<A->cmap->N; j++) {
905064f8208SBarry Smith         if (tmp2[j] > *nrm) *nrm = tmp2[j];
9063501a2bdSLois Curfman McInnes       }
9078627564fSBarry Smith       ierr = PetscFree2(tmp,tmp2);CHKERRQ(ierr);
908d0f46423SBarry Smith       ierr = PetscLogFlops(A->cmap->n*A->rmap->n);CHKERRQ(ierr);
9093a40ed3dSBarry Smith     } else if (type == NORM_INFINITY) { /* max row norm */
910329f5518SBarry Smith       PetscReal ntemp;
9113501a2bdSLois Curfman McInnes       ierr = MatNorm(mdn->A,type,&ntemp);CHKERRQ(ierr);
912820f2d46SBarry Smith       ierr = MPIU_Allreduce(&ntemp,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRMPI(ierr);
913ce94432eSBarry Smith     } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"No support for two norm");
9143501a2bdSLois Curfman McInnes   }
915637a0070SStefano Zampini   ierr = MatDenseRestoreArrayRead(mdn->A,&av);CHKERRQ(ierr);
9163a40ed3dSBarry Smith   PetscFunctionReturn(0);
9173501a2bdSLois Curfman McInnes }
9183501a2bdSLois Curfman McInnes 
919fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIDense(Mat A,MatReuse reuse,Mat *matout)
9203501a2bdSLois Curfman McInnes {
9213501a2bdSLois Curfman McInnes   Mat_MPIDense   *a    = (Mat_MPIDense*)A->data;
9223501a2bdSLois Curfman McInnes   Mat            B;
923d0f46423SBarry Smith   PetscInt       M = A->rmap->N,N = A->cmap->N,m,n,*rwork,rstart = A->rmap->rstart;
9246849ba73SBarry Smith   PetscErrorCode ierr;
925637a0070SStefano Zampini   PetscInt       j,i,lda;
92687828ca2SBarry Smith   PetscScalar    *v;
9273501a2bdSLois Curfman McInnes 
9283a40ed3dSBarry Smith   PetscFunctionBegin;
929cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) {
930ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
931d0f46423SBarry Smith     ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr);
9327adad957SLisandro Dalcin     ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr);
9330298fd71SBarry Smith     ierr = MatMPIDenseSetPreallocation(B,NULL);CHKERRQ(ierr);
934637a0070SStefano Zampini   } else B = *matout;
9353501a2bdSLois Curfman McInnes 
936637a0070SStefano Zampini   m    = a->A->rmap->n; n = a->A->cmap->n;
937637a0070SStefano Zampini   ierr = MatDenseGetArrayRead(a->A,(const PetscScalar**)&v);CHKERRQ(ierr);
938637a0070SStefano Zampini   ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr);
939785e854fSJed Brown   ierr = PetscMalloc1(m,&rwork);CHKERRQ(ierr);
9403501a2bdSLois Curfman McInnes   for (i=0; i<m; i++) rwork[i] = rstart + i;
9411acff37aSSatish Balay   for (j=0; j<n; j++) {
9423501a2bdSLois Curfman McInnes     ierr = MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES);CHKERRQ(ierr);
943637a0070SStefano Zampini     v   += lda;
9443501a2bdSLois Curfman McInnes   }
945637a0070SStefano Zampini   ierr = MatDenseRestoreArrayRead(a->A,(const PetscScalar**)&v);CHKERRQ(ierr);
946606d414cSSatish Balay   ierr = PetscFree(rwork);CHKERRQ(ierr);
9476d4a8577SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
9486d4a8577SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
949cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) {
9503501a2bdSLois Curfman McInnes     *matout = B;
9513501a2bdSLois Curfman McInnes   } else {
95228be2f97SBarry Smith     ierr = MatHeaderMerge(A,&B);CHKERRQ(ierr);
9533501a2bdSLois Curfman McInnes   }
9543a40ed3dSBarry Smith   PetscFunctionReturn(0);
955096963f5SLois Curfman McInnes }
956096963f5SLois Curfman McInnes 
9576849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat*);
95852c5f739Sprj- PETSC_INTERN PetscErrorCode MatScale_MPIDense(Mat,PetscScalar);
9598965ea79SLois Curfman McInnes 
9604994cf47SJed Brown PetscErrorCode MatSetUp_MPIDense(Mat A)
961273d9f13SBarry Smith {
962dfbe8321SBarry Smith   PetscErrorCode ierr;
963273d9f13SBarry Smith 
964273d9f13SBarry Smith   PetscFunctionBegin;
96518992e5dSStefano Zampini   ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr);
96618992e5dSStefano Zampini   ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr);
96718992e5dSStefano Zampini   if (!A->preallocated) {
968f4259b30SLisandro Dalcin     ierr = MatMPIDenseSetPreallocation(A,NULL);CHKERRQ(ierr);
96918992e5dSStefano Zampini   }
970273d9f13SBarry Smith   PetscFunctionReturn(0);
971273d9f13SBarry Smith }
972273d9f13SBarry Smith 
973488007eeSBarry Smith PetscErrorCode MatAXPY_MPIDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str)
974488007eeSBarry Smith {
975488007eeSBarry Smith   PetscErrorCode ierr;
976488007eeSBarry Smith   Mat_MPIDense   *A = (Mat_MPIDense*)Y->data, *B = (Mat_MPIDense*)X->data;
977488007eeSBarry Smith 
978488007eeSBarry Smith   PetscFunctionBegin;
979488007eeSBarry Smith   ierr = MatAXPY(A->A,alpha,B->A,str);CHKERRQ(ierr);
980488007eeSBarry Smith   PetscFunctionReturn(0);
981488007eeSBarry Smith }
982488007eeSBarry Smith 
9837087cfbeSBarry Smith PetscErrorCode MatConjugate_MPIDense(Mat mat)
984ba337c44SJed Brown {
985ba337c44SJed Brown   Mat_MPIDense   *a = (Mat_MPIDense*)mat->data;
986ba337c44SJed Brown   PetscErrorCode ierr;
987ba337c44SJed Brown 
988ba337c44SJed Brown   PetscFunctionBegin;
989ba337c44SJed Brown   ierr = MatConjugate(a->A);CHKERRQ(ierr);
990ba337c44SJed Brown   PetscFunctionReturn(0);
991ba337c44SJed Brown }
992ba337c44SJed Brown 
993ba337c44SJed Brown PetscErrorCode MatRealPart_MPIDense(Mat A)
994ba337c44SJed Brown {
995ba337c44SJed Brown   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
996ba337c44SJed Brown   PetscErrorCode ierr;
997ba337c44SJed Brown 
998ba337c44SJed Brown   PetscFunctionBegin;
999ba337c44SJed Brown   ierr = MatRealPart(a->A);CHKERRQ(ierr);
1000ba337c44SJed Brown   PetscFunctionReturn(0);
1001ba337c44SJed Brown }
1002ba337c44SJed Brown 
1003ba337c44SJed Brown PetscErrorCode MatImaginaryPart_MPIDense(Mat A)
1004ba337c44SJed Brown {
1005ba337c44SJed Brown   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
1006ba337c44SJed Brown   PetscErrorCode ierr;
1007ba337c44SJed Brown 
1008ba337c44SJed Brown   PetscFunctionBegin;
1009ba337c44SJed Brown   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
1010ba337c44SJed Brown   PetscFunctionReturn(0);
1011ba337c44SJed Brown }
1012ba337c44SJed Brown 
101349a6ff4bSBarry Smith static PetscErrorCode MatGetColumnVector_MPIDense(Mat A,Vec v,PetscInt col)
101449a6ff4bSBarry Smith {
101549a6ff4bSBarry Smith   PetscErrorCode ierr;
1016637a0070SStefano Zampini   Mat_MPIDense   *a = (Mat_MPIDense*) A->data;
101749a6ff4bSBarry Smith 
101849a6ff4bSBarry Smith   PetscFunctionBegin;
1019637a0070SStefano Zampini   if (!a->A) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Missing local matrix");
1020637a0070SStefano Zampini   if (!a->A->ops->getcolumnvector) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Missing get column operation");
1021637a0070SStefano Zampini   ierr = (*a->A->ops->getcolumnvector)(a->A,v,col);CHKERRQ(ierr);
102249a6ff4bSBarry Smith   PetscFunctionReturn(0);
102349a6ff4bSBarry Smith }
102449a6ff4bSBarry Smith 
1025*857cbf51SRichard Tran Mills PETSC_INTERN PetscErrorCode MatGetColumnReductions_SeqDense(Mat,PetscInt,PetscReal*);
102652c5f739Sprj- 
1027*857cbf51SRichard Tran Mills PetscErrorCode MatGetColumnReductions_MPIDense(Mat A,PetscInt type,PetscReal *reductions)
10280716a85fSBarry Smith {
10290716a85fSBarry Smith   PetscErrorCode ierr;
1030a873a8cdSSam Reynolds   PetscInt       i,m,n;
10310716a85fSBarry Smith   Mat_MPIDense   *a = (Mat_MPIDense*) A->data;
10320716a85fSBarry Smith   PetscReal      *work;
10330716a85fSBarry Smith 
10340716a85fSBarry Smith   PetscFunctionBegin;
1035a873a8cdSSam Reynolds   ierr = MatGetSize(A,&m,&n);CHKERRQ(ierr);
1036785e854fSJed Brown   ierr = PetscMalloc1(n,&work);CHKERRQ(ierr);
1037*857cbf51SRichard Tran Mills   if (type == REDUCTION_MEAN_REALPART) {
1038*857cbf51SRichard Tran Mills     ierr = MatGetColumnReductions_SeqDense(a->A,(PetscInt)REDUCTION_SUM_REALPART,work);CHKERRQ(ierr);
1039*857cbf51SRichard Tran Mills   } else if (type == REDUCTION_MEAN_IMAGINARYPART) {
1040*857cbf51SRichard Tran Mills     ierr = MatGetColumnReductions_SeqDense(a->A,(PetscInt)REDUCTION_SUM_IMAGINARYPART,work);CHKERRQ(ierr);
1041a873a8cdSSam Reynolds   } else {
1042a873a8cdSSam Reynolds     ierr = MatGetColumnReductions_SeqDense(a->A,type,work);CHKERRQ(ierr);
1043a873a8cdSSam Reynolds   }
1044*857cbf51SRichard Tran Mills   if (type == NORM_2) {
10450716a85fSBarry Smith     for (i=0; i<n; i++) work[i] *= work[i];
10460716a85fSBarry Smith   }
1047*857cbf51SRichard Tran Mills   if (type == NORM_INFINITY) {
1048a873a8cdSSam Reynolds     ierr = MPIU_Allreduce(work,reductions,n,MPIU_REAL,MPIU_MAX,A->hdr.comm);CHKERRMPI(ierr);
10490716a85fSBarry Smith   } else {
1050a873a8cdSSam Reynolds     ierr = MPIU_Allreduce(work,reductions,n,MPIU_REAL,MPIU_SUM,A->hdr.comm);CHKERRMPI(ierr);
10510716a85fSBarry Smith   }
10520716a85fSBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
1053*857cbf51SRichard Tran Mills   if (type == NORM_2) {
1054a873a8cdSSam Reynolds     for (i=0; i<n; i++) reductions[i] = PetscSqrtReal(reductions[i]);
1055*857cbf51SRichard Tran Mills   } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) {
1056a873a8cdSSam Reynolds     for (i=0; i<n; i++) reductions[i] /= m;
10570716a85fSBarry Smith   }
10580716a85fSBarry Smith   PetscFunctionReturn(0);
10590716a85fSBarry Smith }
10600716a85fSBarry Smith 
1061637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA)
10626947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVec_MPIDenseCUDA(Mat A,PetscInt col,Vec *v)
10636947451fSStefano Zampini {
10646947451fSStefano Zampini   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
10656947451fSStefano Zampini   PetscErrorCode ierr;
10666947451fSStefano Zampini   PetscInt       lda;
10676947451fSStefano Zampini 
10686947451fSStefano Zampini   PetscFunctionBegin;
1069616b8fbbSStefano Zampini   if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first");
1070616b8fbbSStefano Zampini   if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first");
10716947451fSStefano Zampini   if (!a->cvec) {
10726947451fSStefano Zampini     ierr = VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr);
1073616b8fbbSStefano Zampini     ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec);CHKERRQ(ierr);
10746947451fSStefano Zampini   }
10756947451fSStefano Zampini   a->vecinuse = col + 1;
10766947451fSStefano Zampini   ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr);
10776947451fSStefano Zampini   ierr = MatDenseCUDAGetArray(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr);
10786947451fSStefano Zampini   ierr = VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr);
10796947451fSStefano Zampini   *v   = a->cvec;
10806947451fSStefano Zampini   PetscFunctionReturn(0);
10816947451fSStefano Zampini }
10826947451fSStefano Zampini 
10836947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVec_MPIDenseCUDA(Mat A,PetscInt col,Vec *v)
10846947451fSStefano Zampini {
10856947451fSStefano Zampini   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
10866947451fSStefano Zampini   PetscErrorCode ierr;
10876947451fSStefano Zampini 
10886947451fSStefano Zampini   PetscFunctionBegin;
10895ea7661aSPierre Jolivet   if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first");
10906947451fSStefano Zampini   if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector");
10916947451fSStefano Zampini   a->vecinuse = 0;
10926947451fSStefano Zampini   ierr = MatDenseCUDARestoreArray(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr);
10936947451fSStefano Zampini   ierr = VecCUDAResetArray(a->cvec);CHKERRQ(ierr);
10946947451fSStefano Zampini   *v   = NULL;
10956947451fSStefano Zampini   PetscFunctionReturn(0);
10966947451fSStefano Zampini }
10976947451fSStefano Zampini 
10986947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecRead_MPIDenseCUDA(Mat A,PetscInt col,Vec *v)
10996947451fSStefano Zampini {
11006947451fSStefano Zampini   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
11016947451fSStefano Zampini   PetscInt       lda;
11026947451fSStefano Zampini   PetscErrorCode ierr;
11036947451fSStefano Zampini 
11046947451fSStefano Zampini   PetscFunctionBegin;
1105616b8fbbSStefano Zampini   if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first");
1106616b8fbbSStefano Zampini   if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first");
11076947451fSStefano Zampini   if (!a->cvec) {
11086947451fSStefano Zampini     ierr = VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr);
1109616b8fbbSStefano Zampini     ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec);CHKERRQ(ierr);
11106947451fSStefano Zampini   }
11116947451fSStefano Zampini   a->vecinuse = col + 1;
11126947451fSStefano Zampini   ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr);
11136947451fSStefano Zampini   ierr = MatDenseCUDAGetArrayRead(a->A,&a->ptrinuse);CHKERRQ(ierr);
11146947451fSStefano Zampini   ierr = VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr);
11156947451fSStefano Zampini   ierr = VecLockReadPush(a->cvec);CHKERRQ(ierr);
11166947451fSStefano Zampini   *v   = a->cvec;
11176947451fSStefano Zampini   PetscFunctionReturn(0);
11186947451fSStefano Zampini }
11196947451fSStefano Zampini 
11206947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecRead_MPIDenseCUDA(Mat A,PetscInt col,Vec *v)
11216947451fSStefano Zampini {
11226947451fSStefano Zampini   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
11236947451fSStefano Zampini   PetscErrorCode ierr;
11246947451fSStefano Zampini 
11256947451fSStefano Zampini   PetscFunctionBegin;
1126616b8fbbSStefano Zampini   if (!a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first");
1127616b8fbbSStefano Zampini   if (!a->cvec) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector");
11286947451fSStefano Zampini   a->vecinuse = 0;
11296947451fSStefano Zampini   ierr = MatDenseCUDARestoreArrayRead(a->A,&a->ptrinuse);CHKERRQ(ierr);
11306947451fSStefano Zampini   ierr = VecLockReadPop(a->cvec);CHKERRQ(ierr);
11316947451fSStefano Zampini   ierr = VecCUDAResetArray(a->cvec);CHKERRQ(ierr);
11326947451fSStefano Zampini   *v   = NULL;
11336947451fSStefano Zampini   PetscFunctionReturn(0);
11346947451fSStefano Zampini }
11356947451fSStefano Zampini 
11366947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecWrite_MPIDenseCUDA(Mat A,PetscInt col,Vec *v)
11376947451fSStefano Zampini {
11386947451fSStefano Zampini   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
11396947451fSStefano Zampini   PetscErrorCode ierr;
11406947451fSStefano Zampini   PetscInt       lda;
11416947451fSStefano Zampini 
11426947451fSStefano Zampini   PetscFunctionBegin;
1143616b8fbbSStefano Zampini   if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first");
1144616b8fbbSStefano Zampini   if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first");
11456947451fSStefano Zampini   if (!a->cvec) {
11466947451fSStefano Zampini     ierr = VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr);
1147616b8fbbSStefano Zampini     ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec);CHKERRQ(ierr);
11486947451fSStefano Zampini   }
11496947451fSStefano Zampini   a->vecinuse = col + 1;
11506947451fSStefano Zampini   ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr);
11516947451fSStefano Zampini   ierr = MatDenseCUDAGetArrayWrite(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr);
11526947451fSStefano Zampini   ierr = VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr);
11536947451fSStefano Zampini   *v   = a->cvec;
11546947451fSStefano Zampini   PetscFunctionReturn(0);
11556947451fSStefano Zampini }
11566947451fSStefano Zampini 
11576947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDenseCUDA(Mat A,PetscInt col,Vec *v)
11586947451fSStefano Zampini {
11596947451fSStefano Zampini   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
11606947451fSStefano Zampini   PetscErrorCode ierr;
11616947451fSStefano Zampini 
11626947451fSStefano Zampini   PetscFunctionBegin;
1163616b8fbbSStefano Zampini   if (!a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first");
1164616b8fbbSStefano Zampini   if (!a->cvec) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector");
11656947451fSStefano Zampini   a->vecinuse = 0;
11666947451fSStefano Zampini   ierr = MatDenseCUDARestoreArrayWrite(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr);
11676947451fSStefano Zampini   ierr = VecCUDAResetArray(a->cvec);CHKERRQ(ierr);
11686947451fSStefano Zampini   *v   = NULL;
11696947451fSStefano Zampini   PetscFunctionReturn(0);
11706947451fSStefano Zampini }
11716947451fSStefano Zampini 
1172637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAPlaceArray_MPIDenseCUDA(Mat A, const PetscScalar *a)
1173637a0070SStefano Zampini {
1174637a0070SStefano Zampini   Mat_MPIDense   *l = (Mat_MPIDense*) A->data;
1175637a0070SStefano Zampini   PetscErrorCode ierr;
1176637a0070SStefano Zampini 
1177637a0070SStefano Zampini   PetscFunctionBegin;
1178616b8fbbSStefano Zampini   if (l->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first");
1179616b8fbbSStefano Zampini   if (l->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first");
1180637a0070SStefano Zampini   ierr = MatDenseCUDAPlaceArray(l->A,a);CHKERRQ(ierr);
1181637a0070SStefano Zampini   PetscFunctionReturn(0);
1182637a0070SStefano Zampini }
1183637a0070SStefano Zampini 
1184637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAResetArray_MPIDenseCUDA(Mat A)
1185637a0070SStefano Zampini {
1186637a0070SStefano Zampini   Mat_MPIDense   *l = (Mat_MPIDense*) A->data;
1187637a0070SStefano Zampini   PetscErrorCode ierr;
1188637a0070SStefano Zampini 
1189637a0070SStefano Zampini   PetscFunctionBegin;
1190616b8fbbSStefano Zampini   if (l->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first");
1191616b8fbbSStefano Zampini   if (l->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first");
1192637a0070SStefano Zampini   ierr = MatDenseCUDAResetArray(l->A);CHKERRQ(ierr);
1193637a0070SStefano Zampini   PetscFunctionReturn(0);
1194637a0070SStefano Zampini }
1195637a0070SStefano Zampini 
1196d5ea218eSStefano Zampini static PetscErrorCode MatDenseCUDAReplaceArray_MPIDenseCUDA(Mat A, const PetscScalar *a)
1197d5ea218eSStefano Zampini {
1198d5ea218eSStefano Zampini   Mat_MPIDense   *l = (Mat_MPIDense*) A->data;
1199d5ea218eSStefano Zampini   PetscErrorCode ierr;
1200d5ea218eSStefano Zampini 
1201d5ea218eSStefano Zampini   PetscFunctionBegin;
1202616b8fbbSStefano Zampini   if (l->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first");
1203616b8fbbSStefano Zampini   if (l->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first");
1204d5ea218eSStefano Zampini   ierr = MatDenseCUDAReplaceArray(l->A,a);CHKERRQ(ierr);
1205d5ea218eSStefano Zampini   PetscFunctionReturn(0);
1206d5ea218eSStefano Zampini }
1207d5ea218eSStefano Zampini 
1208637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArrayWrite_MPIDenseCUDA(Mat A, PetscScalar **a)
1209637a0070SStefano Zampini {
1210637a0070SStefano Zampini   Mat_MPIDense   *l = (Mat_MPIDense*) A->data;
1211637a0070SStefano Zampini   PetscErrorCode ierr;
1212637a0070SStefano Zampini 
1213637a0070SStefano Zampini   PetscFunctionBegin;
1214637a0070SStefano Zampini   ierr = MatDenseCUDAGetArrayWrite(l->A,a);CHKERRQ(ierr);
1215637a0070SStefano Zampini   PetscFunctionReturn(0);
1216637a0070SStefano Zampini }
1217637a0070SStefano Zampini 
1218637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArrayWrite_MPIDenseCUDA(Mat A, PetscScalar **a)
1219637a0070SStefano Zampini {
1220637a0070SStefano Zampini   Mat_MPIDense   *l = (Mat_MPIDense*) A->data;
1221637a0070SStefano Zampini   PetscErrorCode ierr;
1222637a0070SStefano Zampini 
1223637a0070SStefano Zampini   PetscFunctionBegin;
1224637a0070SStefano Zampini   ierr = MatDenseCUDARestoreArrayWrite(l->A,a);CHKERRQ(ierr);
1225637a0070SStefano Zampini   PetscFunctionReturn(0);
1226637a0070SStefano Zampini }
1227637a0070SStefano Zampini 
1228637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArrayRead_MPIDenseCUDA(Mat A, const PetscScalar **a)
1229637a0070SStefano Zampini {
1230637a0070SStefano Zampini   Mat_MPIDense   *l = (Mat_MPIDense*) A->data;
1231637a0070SStefano Zampini   PetscErrorCode ierr;
1232637a0070SStefano Zampini 
1233637a0070SStefano Zampini   PetscFunctionBegin;
1234637a0070SStefano Zampini   ierr = MatDenseCUDAGetArrayRead(l->A,a);CHKERRQ(ierr);
1235637a0070SStefano Zampini   PetscFunctionReturn(0);
1236637a0070SStefano Zampini }
1237637a0070SStefano Zampini 
1238637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArrayRead_MPIDenseCUDA(Mat A, const PetscScalar **a)
1239637a0070SStefano Zampini {
1240637a0070SStefano Zampini   Mat_MPIDense   *l = (Mat_MPIDense*) A->data;
1241637a0070SStefano Zampini   PetscErrorCode ierr;
1242637a0070SStefano Zampini 
1243637a0070SStefano Zampini   PetscFunctionBegin;
1244637a0070SStefano Zampini   ierr = MatDenseCUDARestoreArrayRead(l->A,a);CHKERRQ(ierr);
1245637a0070SStefano Zampini   PetscFunctionReturn(0);
1246637a0070SStefano Zampini }
1247637a0070SStefano Zampini 
1248637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArray_MPIDenseCUDA(Mat A, PetscScalar **a)
1249637a0070SStefano Zampini {
1250637a0070SStefano Zampini   Mat_MPIDense   *l = (Mat_MPIDense*) A->data;
1251637a0070SStefano Zampini   PetscErrorCode ierr;
1252637a0070SStefano Zampini 
1253637a0070SStefano Zampini   PetscFunctionBegin;
1254637a0070SStefano Zampini   ierr = MatDenseCUDAGetArray(l->A,a);CHKERRQ(ierr);
1255637a0070SStefano Zampini   PetscFunctionReturn(0);
1256637a0070SStefano Zampini }
1257637a0070SStefano Zampini 
1258637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArray_MPIDenseCUDA(Mat A, PetscScalar **a)
1259637a0070SStefano Zampini {
1260637a0070SStefano Zampini   Mat_MPIDense   *l = (Mat_MPIDense*) A->data;
1261637a0070SStefano Zampini   PetscErrorCode ierr;
1262637a0070SStefano Zampini 
1263637a0070SStefano Zampini   PetscFunctionBegin;
1264637a0070SStefano Zampini   ierr = MatDenseCUDARestoreArray(l->A,a);CHKERRQ(ierr);
1265637a0070SStefano Zampini   PetscFunctionReturn(0);
1266637a0070SStefano Zampini }
1267637a0070SStefano Zampini 
12686947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecWrite_MPIDense(Mat,PetscInt,Vec*);
12696947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecRead_MPIDense(Mat,PetscInt,Vec*);
12706947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVec_MPIDense(Mat,PetscInt,Vec*);
12716947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDense(Mat,PetscInt,Vec*);
12726947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecRead_MPIDense(Mat,PetscInt,Vec*);
12736947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVec_MPIDense(Mat,PetscInt,Vec*);
12745ea7661aSPierre Jolivet static PetscErrorCode MatDenseRestoreSubMatrix_MPIDense(Mat,Mat*);
12756947451fSStefano Zampini 
1276637a0070SStefano Zampini static PetscErrorCode MatBindToCPU_MPIDenseCUDA(Mat mat,PetscBool bind)
1277637a0070SStefano Zampini {
1278637a0070SStefano Zampini   Mat_MPIDense   *d = (Mat_MPIDense*)mat->data;
1279637a0070SStefano Zampini   PetscErrorCode ierr;
1280637a0070SStefano Zampini 
1281637a0070SStefano Zampini   PetscFunctionBegin;
1282616b8fbbSStefano Zampini   if (d->vecinuse) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first");
1283616b8fbbSStefano Zampini   if (d->matinuse) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first");
1284637a0070SStefano Zampini   if (d->A) {
1285637a0070SStefano Zampini     ierr = MatBindToCPU(d->A,bind);CHKERRQ(ierr);
1286637a0070SStefano Zampini   }
1287637a0070SStefano Zampini   mat->boundtocpu = bind;
12886947451fSStefano Zampini   if (!bind) {
12896947451fSStefano Zampini     PetscBool iscuda;
12906947451fSStefano Zampini 
12916947451fSStefano Zampini     ierr = PetscObjectTypeCompare((PetscObject)d->cvec,VECMPICUDA,&iscuda);CHKERRQ(ierr);
12926947451fSStefano Zampini     if (!iscuda) {
12936947451fSStefano Zampini       ierr = VecDestroy(&d->cvec);CHKERRQ(ierr);
1294616b8fbbSStefano Zampini     }
1295616b8fbbSStefano Zampini     ierr = PetscObjectTypeCompare((PetscObject)d->cmat,MATMPIDENSECUDA,&iscuda);CHKERRQ(ierr);
1296616b8fbbSStefano Zampini     if (!iscuda) {
12975ea7661aSPierre Jolivet       ierr = MatDestroy(&d->cmat);CHKERRQ(ierr);
12986947451fSStefano Zampini     }
12996947451fSStefano Zampini     ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDenseCUDA);CHKERRQ(ierr);
13006947451fSStefano Zampini     ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDenseCUDA);CHKERRQ(ierr);
13016947451fSStefano Zampini     ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDenseCUDA);CHKERRQ(ierr);
13026947451fSStefano Zampini     ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDenseCUDA);CHKERRQ(ierr);
13036947451fSStefano Zampini     ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDenseCUDA);CHKERRQ(ierr);
13046947451fSStefano Zampini     ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDenseCUDA);CHKERRQ(ierr);
13056947451fSStefano Zampini   } else {
13066947451fSStefano Zampini     ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDense);CHKERRQ(ierr);
13076947451fSStefano Zampini     ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDense);CHKERRQ(ierr);
13086947451fSStefano Zampini     ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDense);CHKERRQ(ierr);
13096947451fSStefano Zampini     ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDense);CHKERRQ(ierr);
13106947451fSStefano Zampini     ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDense);CHKERRQ(ierr);
13116947451fSStefano Zampini     ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDense);CHKERRQ(ierr);
1312616b8fbbSStefano Zampini   }
1313616b8fbbSStefano Zampini   if (d->cmat) {
1314616b8fbbSStefano Zampini     ierr = MatBindToCPU(d->cmat,bind);CHKERRQ(ierr);
13156947451fSStefano Zampini   }
1316637a0070SStefano Zampini   PetscFunctionReturn(0);
1317637a0070SStefano Zampini }
1318637a0070SStefano Zampini 
1319637a0070SStefano Zampini PetscErrorCode MatMPIDenseCUDASetPreallocation(Mat A, PetscScalar *d_data)
1320637a0070SStefano Zampini {
1321637a0070SStefano Zampini   Mat_MPIDense   *d = (Mat_MPIDense*)A->data;
1322637a0070SStefano Zampini   PetscErrorCode ierr;
1323637a0070SStefano Zampini   PetscBool      iscuda;
1324637a0070SStefano Zampini 
1325637a0070SStefano Zampini   PetscFunctionBegin;
1326d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
1327637a0070SStefano Zampini   ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIDENSECUDA,&iscuda);CHKERRQ(ierr);
1328637a0070SStefano Zampini   if (!iscuda) PetscFunctionReturn(0);
1329637a0070SStefano Zampini   ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr);
1330637a0070SStefano Zampini   ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr);
1331637a0070SStefano Zampini   if (!d->A) {
1332637a0070SStefano Zampini     ierr = MatCreate(PETSC_COMM_SELF,&d->A);CHKERRQ(ierr);
1333637a0070SStefano Zampini     ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)d->A);CHKERRQ(ierr);
1334637a0070SStefano Zampini     ierr = MatSetSizes(d->A,A->rmap->n,A->cmap->N,A->rmap->n,A->cmap->N);CHKERRQ(ierr);
1335637a0070SStefano Zampini   }
1336637a0070SStefano Zampini   ierr = MatSetType(d->A,MATSEQDENSECUDA);CHKERRQ(ierr);
1337637a0070SStefano Zampini   ierr = MatSeqDenseCUDASetPreallocation(d->A,d_data);CHKERRQ(ierr);
1338637a0070SStefano Zampini   A->preallocated = PETSC_TRUE;
1339637a0070SStefano Zampini   PetscFunctionReturn(0);
1340637a0070SStefano Zampini }
1341637a0070SStefano Zampini #endif
1342637a0070SStefano Zampini 
134373a71a0fSBarry Smith static PetscErrorCode MatSetRandom_MPIDense(Mat x,PetscRandom rctx)
134473a71a0fSBarry Smith {
134573a71a0fSBarry Smith   Mat_MPIDense   *d = (Mat_MPIDense*)x->data;
134673a71a0fSBarry Smith   PetscErrorCode ierr;
134773a71a0fSBarry Smith 
134873a71a0fSBarry Smith   PetscFunctionBegin;
1349637a0070SStefano Zampini   ierr = MatSetRandom(d->A,rctx);CHKERRQ(ierr);
135073a71a0fSBarry Smith   PetscFunctionReturn(0);
135173a71a0fSBarry Smith }
135273a71a0fSBarry Smith 
13533b49f96aSBarry Smith static PetscErrorCode MatMissingDiagonal_MPIDense(Mat A,PetscBool  *missing,PetscInt *d)
13543b49f96aSBarry Smith {
13553b49f96aSBarry Smith   PetscFunctionBegin;
13563b49f96aSBarry Smith   *missing = PETSC_FALSE;
13573b49f96aSBarry Smith   PetscFunctionReturn(0);
13583b49f96aSBarry Smith }
13593b49f96aSBarry Smith 
13604222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat,Mat,PetscReal,Mat);
1361cc48ffa7SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat,Mat,Mat);
13626718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat,Mat,Mat);
13636718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat,Mat,PetscReal,Mat);
13646718818eSStefano Zampini static PetscErrorCode MatEqual_MPIDense(Mat,Mat,PetscBool*);
13656718818eSStefano Zampini static PetscErrorCode MatLoad_MPIDense(Mat,PetscViewer);
1366cc48ffa7SToby Isaac 
13678965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/
136809dc0095SBarry Smith static struct _MatOps MatOps_Values = { MatSetValues_MPIDense,
136909dc0095SBarry Smith                                         MatGetRow_MPIDense,
137009dc0095SBarry Smith                                         MatRestoreRow_MPIDense,
137109dc0095SBarry Smith                                         MatMult_MPIDense,
137297304618SKris Buschelman                                 /*  4*/ MatMultAdd_MPIDense,
13737c922b88SBarry Smith                                         MatMultTranspose_MPIDense,
13747c922b88SBarry Smith                                         MatMultTransposeAdd_MPIDense,
1375f4259b30SLisandro Dalcin                                         NULL,
1376f4259b30SLisandro Dalcin                                         NULL,
1377f4259b30SLisandro Dalcin                                         NULL,
1378f4259b30SLisandro Dalcin                                 /* 10*/ NULL,
1379f4259b30SLisandro Dalcin                                         NULL,
1380f4259b30SLisandro Dalcin                                         NULL,
1381f4259b30SLisandro Dalcin                                         NULL,
138209dc0095SBarry Smith                                         MatTranspose_MPIDense,
138397304618SKris Buschelman                                 /* 15*/ MatGetInfo_MPIDense,
13846e4ee0c6SHong Zhang                                         MatEqual_MPIDense,
138509dc0095SBarry Smith                                         MatGetDiagonal_MPIDense,
13865b2fa520SLois Curfman McInnes                                         MatDiagonalScale_MPIDense,
138709dc0095SBarry Smith                                         MatNorm_MPIDense,
138897304618SKris Buschelman                                 /* 20*/ MatAssemblyBegin_MPIDense,
138909dc0095SBarry Smith                                         MatAssemblyEnd_MPIDense,
139009dc0095SBarry Smith                                         MatSetOption_MPIDense,
139109dc0095SBarry Smith                                         MatZeroEntries_MPIDense,
1392d519adbfSMatthew Knepley                                 /* 24*/ MatZeroRows_MPIDense,
1393f4259b30SLisandro Dalcin                                         NULL,
1394f4259b30SLisandro Dalcin                                         NULL,
1395f4259b30SLisandro Dalcin                                         NULL,
1396f4259b30SLisandro Dalcin                                         NULL,
13974994cf47SJed Brown                                 /* 29*/ MatSetUp_MPIDense,
1398f4259b30SLisandro Dalcin                                         NULL,
1399f4259b30SLisandro Dalcin                                         NULL,
1400c56a70eeSBarry Smith                                         MatGetDiagonalBlock_MPIDense,
1401f4259b30SLisandro Dalcin                                         NULL,
1402d519adbfSMatthew Knepley                                 /* 34*/ MatDuplicate_MPIDense,
1403f4259b30SLisandro Dalcin                                         NULL,
1404f4259b30SLisandro Dalcin                                         NULL,
1405f4259b30SLisandro Dalcin                                         NULL,
1406f4259b30SLisandro Dalcin                                         NULL,
1407d519adbfSMatthew Knepley                                 /* 39*/ MatAXPY_MPIDense,
14087dae84e0SHong Zhang                                         MatCreateSubMatrices_MPIDense,
1409f4259b30SLisandro Dalcin                                         NULL,
141009dc0095SBarry Smith                                         MatGetValues_MPIDense,
1411a76f77c3SStefano Zampini                                         MatCopy_MPIDense,
1412f4259b30SLisandro Dalcin                                 /* 44*/ NULL,
141309dc0095SBarry Smith                                         MatScale_MPIDense,
14147d68702bSBarry Smith                                         MatShift_Basic,
1415f4259b30SLisandro Dalcin                                         NULL,
1416f4259b30SLisandro Dalcin                                         NULL,
141773a71a0fSBarry Smith                                 /* 49*/ MatSetRandom_MPIDense,
1418f4259b30SLisandro Dalcin                                         NULL,
1419f4259b30SLisandro Dalcin                                         NULL,
1420f4259b30SLisandro Dalcin                                         NULL,
1421f4259b30SLisandro Dalcin                                         NULL,
1422f4259b30SLisandro Dalcin                                 /* 54*/ NULL,
1423f4259b30SLisandro Dalcin                                         NULL,
1424f4259b30SLisandro Dalcin                                         NULL,
1425f4259b30SLisandro Dalcin                                         NULL,
1426f4259b30SLisandro Dalcin                                         NULL,
14277dae84e0SHong Zhang                                 /* 59*/ MatCreateSubMatrix_MPIDense,
1428b9b97703SBarry Smith                                         MatDestroy_MPIDense,
1429b9b97703SBarry Smith                                         MatView_MPIDense,
1430f4259b30SLisandro Dalcin                                         NULL,
1431f4259b30SLisandro Dalcin                                         NULL,
1432f4259b30SLisandro Dalcin                                 /* 64*/ NULL,
1433f4259b30SLisandro Dalcin                                         NULL,
1434f4259b30SLisandro Dalcin                                         NULL,
1435f4259b30SLisandro Dalcin                                         NULL,
1436f4259b30SLisandro Dalcin                                         NULL,
1437f4259b30SLisandro Dalcin                                 /* 69*/ NULL,
1438f4259b30SLisandro Dalcin                                         NULL,
1439f4259b30SLisandro Dalcin                                         NULL,
1440f4259b30SLisandro Dalcin                                         NULL,
1441f4259b30SLisandro Dalcin                                         NULL,
1442f4259b30SLisandro Dalcin                                 /* 74*/ NULL,
1443f4259b30SLisandro Dalcin                                         NULL,
1444f4259b30SLisandro Dalcin                                         NULL,
1445f4259b30SLisandro Dalcin                                         NULL,
1446f4259b30SLisandro Dalcin                                         NULL,
1447f4259b30SLisandro Dalcin                                 /* 79*/ NULL,
1448f4259b30SLisandro Dalcin                                         NULL,
1449f4259b30SLisandro Dalcin                                         NULL,
1450f4259b30SLisandro Dalcin                                         NULL,
14515bba2384SShri Abhyankar                                 /* 83*/ MatLoad_MPIDense,
1452f4259b30SLisandro Dalcin                                         NULL,
1453f4259b30SLisandro Dalcin                                         NULL,
1454f4259b30SLisandro Dalcin                                         NULL,
1455f4259b30SLisandro Dalcin                                         NULL,
1456f4259b30SLisandro Dalcin                                         NULL,
1457f4259b30SLisandro Dalcin                                 /* 89*/ NULL,
1458f4259b30SLisandro Dalcin                                         NULL,
1459f4259b30SLisandro Dalcin                                         NULL,
1460f4259b30SLisandro Dalcin                                         NULL,
1461f4259b30SLisandro Dalcin                                         NULL,
1462f4259b30SLisandro Dalcin                                 /* 94*/ NULL,
1463f4259b30SLisandro Dalcin                                         NULL,
14646718818eSStefano Zampini                                         MatMatTransposeMultSymbolic_MPIDense_MPIDense,
1465cc48ffa7SToby Isaac                                         MatMatTransposeMultNumeric_MPIDense_MPIDense,
1466f4259b30SLisandro Dalcin                                         NULL,
14674222ddf1SHong Zhang                                 /* 99*/ MatProductSetFromOptions_MPIDense,
1468f4259b30SLisandro Dalcin                                         NULL,
1469f4259b30SLisandro Dalcin                                         NULL,
1470ba337c44SJed Brown                                         MatConjugate_MPIDense,
1471f4259b30SLisandro Dalcin                                         NULL,
1472f4259b30SLisandro Dalcin                                 /*104*/ NULL,
1473ba337c44SJed Brown                                         MatRealPart_MPIDense,
1474ba337c44SJed Brown                                         MatImaginaryPart_MPIDense,
1475f4259b30SLisandro Dalcin                                         NULL,
1476f4259b30SLisandro Dalcin                                         NULL,
1477f4259b30SLisandro Dalcin                                 /*109*/ NULL,
1478f4259b30SLisandro Dalcin                                         NULL,
1479f4259b30SLisandro Dalcin                                         NULL,
148049a6ff4bSBarry Smith                                         MatGetColumnVector_MPIDense,
14813b49f96aSBarry Smith                                         MatMissingDiagonal_MPIDense,
1482f4259b30SLisandro Dalcin                                 /*114*/ NULL,
1483f4259b30SLisandro Dalcin                                         NULL,
1484f4259b30SLisandro Dalcin                                         NULL,
1485f4259b30SLisandro Dalcin                                         NULL,
1486f4259b30SLisandro Dalcin                                         NULL,
1487f4259b30SLisandro Dalcin                                 /*119*/ NULL,
1488f4259b30SLisandro Dalcin                                         NULL,
1489f4259b30SLisandro Dalcin                                         NULL,
1490f4259b30SLisandro Dalcin                                         NULL,
1491f4259b30SLisandro Dalcin                                         NULL,
1492f4259b30SLisandro Dalcin                                 /*124*/ NULL,
1493a873a8cdSSam Reynolds                                         MatGetColumnReductions_MPIDense,
1494f4259b30SLisandro Dalcin                                         NULL,
1495f4259b30SLisandro Dalcin                                         NULL,
1496f4259b30SLisandro Dalcin                                         NULL,
1497f4259b30SLisandro Dalcin                                 /*129*/ NULL,
1498f4259b30SLisandro Dalcin                                         NULL,
14996718818eSStefano Zampini                                         MatTransposeMatMultSymbolic_MPIDense_MPIDense,
1500cb20be35SHong Zhang                                         MatTransposeMatMultNumeric_MPIDense_MPIDense,
1501f4259b30SLisandro Dalcin                                         NULL,
1502f4259b30SLisandro Dalcin                                 /*134*/ NULL,
1503f4259b30SLisandro Dalcin                                         NULL,
1504f4259b30SLisandro Dalcin                                         NULL,
1505f4259b30SLisandro Dalcin                                         NULL,
1506f4259b30SLisandro Dalcin                                         NULL,
1507f4259b30SLisandro Dalcin                                 /*139*/ NULL,
1508f4259b30SLisandro Dalcin                                         NULL,
1509f4259b30SLisandro Dalcin                                         NULL,
1510f4259b30SLisandro Dalcin                                         NULL,
1511f4259b30SLisandro Dalcin                                         NULL,
15124222ddf1SHong Zhang                                         MatCreateMPIMatConcatenateSeqMat_MPIDense,
1513f4259b30SLisandro Dalcin                                 /*145*/ NULL,
1514f4259b30SLisandro Dalcin                                         NULL,
1515f4259b30SLisandro Dalcin                                         NULL
1516ba337c44SJed Brown };
15178965ea79SLois Curfman McInnes 
15187087cfbeSBarry Smith PetscErrorCode  MatMPIDenseSetPreallocation_MPIDense(Mat mat,PetscScalar *data)
1519a23d5eceSKris Buschelman {
1520637a0070SStefano Zampini   Mat_MPIDense   *a = (Mat_MPIDense*)mat->data;
1521637a0070SStefano Zampini   PetscBool      iscuda;
1522dfbe8321SBarry Smith   PetscErrorCode ierr;
1523a23d5eceSKris Buschelman 
1524a23d5eceSKris Buschelman   PetscFunctionBegin;
1525616b8fbbSStefano Zampini   if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first");
152634ef9618SShri Abhyankar   ierr = PetscLayoutSetUp(mat->rmap);CHKERRQ(ierr);
152734ef9618SShri Abhyankar   ierr = PetscLayoutSetUp(mat->cmap);CHKERRQ(ierr);
1528637a0070SStefano Zampini   if (!a->A) {
1529f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&a->A);CHKERRQ(ierr);
15303bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr);
1531637a0070SStefano Zampini     ierr = MatSetSizes(a->A,mat->rmap->n,mat->cmap->N,mat->rmap->n,mat->cmap->N);CHKERRQ(ierr);
1532637a0070SStefano Zampini   }
1533637a0070SStefano Zampini   ierr = PetscObjectTypeCompare((PetscObject)mat,MATMPIDENSECUDA,&iscuda);CHKERRQ(ierr);
1534637a0070SStefano Zampini   ierr = MatSetType(a->A,iscuda ? MATSEQDENSECUDA : MATSEQDENSE);CHKERRQ(ierr);
1535637a0070SStefano Zampini   ierr = MatSeqDenseSetPreallocation(a->A,data);CHKERRQ(ierr);
1536637a0070SStefano Zampini   mat->preallocated = PETSC_TRUE;
1537a23d5eceSKris Buschelman   PetscFunctionReturn(0);
1538a23d5eceSKris Buschelman }
1539a23d5eceSKris Buschelman 
15404e29119aSPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIDense(Mat A, MatType newtype,MatReuse reuse,Mat *newmat)
15414e29119aSPierre Jolivet {
15424e29119aSPierre Jolivet   Mat            B,C;
15434e29119aSPierre Jolivet   PetscErrorCode ierr;
15444e29119aSPierre Jolivet 
15454e29119aSPierre Jolivet   PetscFunctionBegin;
15464e29119aSPierre Jolivet   ierr = MatMPIAIJGetLocalMat(A,MAT_INITIAL_MATRIX,&C);CHKERRQ(ierr);
15474e29119aSPierre Jolivet   ierr = MatConvert_SeqAIJ_SeqDense(C,MATSEQDENSE,MAT_INITIAL_MATRIX,&B);CHKERRQ(ierr);
15484e29119aSPierre Jolivet   ierr = MatDestroy(&C);CHKERRQ(ierr);
15494e29119aSPierre Jolivet   if (reuse == MAT_REUSE_MATRIX) {
15504e29119aSPierre Jolivet     C = *newmat;
15514e29119aSPierre Jolivet   } else C = NULL;
15524e29119aSPierre Jolivet   ierr = MatCreateMPIMatConcatenateSeqMat(PetscObjectComm((PetscObject)A),B,A->cmap->n,!C?MAT_INITIAL_MATRIX:MAT_REUSE_MATRIX,&C);CHKERRQ(ierr);
15534e29119aSPierre Jolivet   ierr = MatDestroy(&B);CHKERRQ(ierr);
15544e29119aSPierre Jolivet   if (reuse == MAT_INPLACE_MATRIX) {
15554e29119aSPierre Jolivet     ierr = MatHeaderReplace(A,&C);CHKERRQ(ierr);
15564e29119aSPierre Jolivet   } else if (reuse == MAT_INITIAL_MATRIX) *newmat = C;
15574e29119aSPierre Jolivet   PetscFunctionReturn(0);
15584e29119aSPierre Jolivet }
15594e29119aSPierre Jolivet 
15604e29119aSPierre Jolivet PetscErrorCode MatConvert_MPIDense_MPIAIJ(Mat A, MatType newtype,MatReuse reuse,Mat *newmat)
15614e29119aSPierre Jolivet {
15624e29119aSPierre Jolivet   Mat            B,C;
15634e29119aSPierre Jolivet   PetscErrorCode ierr;
15644e29119aSPierre Jolivet 
15654e29119aSPierre Jolivet   PetscFunctionBegin;
15664e29119aSPierre Jolivet   ierr = MatDenseGetLocalMatrix(A,&C);CHKERRQ(ierr);
15674e29119aSPierre Jolivet   ierr = MatConvert_SeqDense_SeqAIJ(C,MATSEQAIJ,MAT_INITIAL_MATRIX,&B);CHKERRQ(ierr);
15684e29119aSPierre Jolivet   if (reuse == MAT_REUSE_MATRIX) {
15694e29119aSPierre Jolivet     C = *newmat;
15704e29119aSPierre Jolivet   } else C = NULL;
15714e29119aSPierre Jolivet   ierr = MatCreateMPIMatConcatenateSeqMat(PetscObjectComm((PetscObject)A),B,A->cmap->n,!C?MAT_INITIAL_MATRIX:MAT_REUSE_MATRIX,&C);CHKERRQ(ierr);
15724e29119aSPierre Jolivet   ierr = MatDestroy(&B);CHKERRQ(ierr);
15734e29119aSPierre Jolivet   if (reuse == MAT_INPLACE_MATRIX) {
15744e29119aSPierre Jolivet     ierr = MatHeaderReplace(A,&C);CHKERRQ(ierr);
15754e29119aSPierre Jolivet   } else if (reuse == MAT_INITIAL_MATRIX) *newmat = C;
15764e29119aSPierre Jolivet   PetscFunctionReturn(0);
15774e29119aSPierre Jolivet }
15784e29119aSPierre Jolivet 
157965b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
1580cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIDense_Elemental(Mat A, MatType newtype,MatReuse reuse,Mat *newmat)
15818baccfbdSHong Zhang {
15828ea901baSHong Zhang   Mat            mat_elemental;
15838ea901baSHong Zhang   PetscErrorCode ierr;
158432d7a744SHong Zhang   PetscScalar    *v;
158532d7a744SHong Zhang   PetscInt       m=A->rmap->n,N=A->cmap->N,rstart=A->rmap->rstart,i,*rows,*cols;
15868ea901baSHong Zhang 
15878baccfbdSHong Zhang   PetscFunctionBegin;
1588378336b6SHong Zhang   if (reuse == MAT_REUSE_MATRIX) {
1589378336b6SHong Zhang     mat_elemental = *newmat;
1590378336b6SHong Zhang     ierr = MatZeroEntries(*newmat);CHKERRQ(ierr);
1591378336b6SHong Zhang   } else {
1592378336b6SHong Zhang     ierr = MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental);CHKERRQ(ierr);
1593378336b6SHong Zhang     ierr = MatSetSizes(mat_elemental,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
1594378336b6SHong Zhang     ierr = MatSetType(mat_elemental,MATELEMENTAL);CHKERRQ(ierr);
1595378336b6SHong Zhang     ierr = MatSetUp(mat_elemental);CHKERRQ(ierr);
159632d7a744SHong Zhang     ierr = MatSetOption(mat_elemental,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr);
1597378336b6SHong Zhang   }
1598378336b6SHong Zhang 
159932d7a744SHong Zhang   ierr = PetscMalloc2(m,&rows,N,&cols);CHKERRQ(ierr);
160032d7a744SHong Zhang   for (i=0; i<N; i++) cols[i] = i;
160132d7a744SHong Zhang   for (i=0; i<m; i++) rows[i] = rstart + i;
16028ea901baSHong Zhang 
1603637a0070SStefano Zampini   /* PETSc-Elemental interface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */
160432d7a744SHong Zhang   ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr);
160532d7a744SHong Zhang   ierr = MatSetValues(mat_elemental,m,rows,N,cols,v,ADD_VALUES);CHKERRQ(ierr);
16068ea901baSHong Zhang   ierr = MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
16078ea901baSHong Zhang   ierr = MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
160832d7a744SHong Zhang   ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr);
160932d7a744SHong Zhang   ierr = PetscFree2(rows,cols);CHKERRQ(ierr);
16108ea901baSHong Zhang 
1611511c6705SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
161228be2f97SBarry Smith     ierr = MatHeaderReplace(A,&mat_elemental);CHKERRQ(ierr);
16138ea901baSHong Zhang   } else {
16148ea901baSHong Zhang     *newmat = mat_elemental;
16158ea901baSHong Zhang   }
16168baccfbdSHong Zhang   PetscFunctionReturn(0);
16178baccfbdSHong Zhang }
161865b80a83SHong Zhang #endif
16198baccfbdSHong Zhang 
1620af53bab2SHong Zhang static PetscErrorCode MatDenseGetColumn_MPIDense(Mat A,PetscInt col,PetscScalar **vals)
162186aefd0dSHong Zhang {
162286aefd0dSHong Zhang   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
162386aefd0dSHong Zhang   PetscErrorCode ierr;
162486aefd0dSHong Zhang 
162586aefd0dSHong Zhang   PetscFunctionBegin;
162686aefd0dSHong Zhang   ierr = MatDenseGetColumn(mat->A,col,vals);CHKERRQ(ierr);
162786aefd0dSHong Zhang   PetscFunctionReturn(0);
162886aefd0dSHong Zhang }
162986aefd0dSHong Zhang 
1630af53bab2SHong Zhang static PetscErrorCode MatDenseRestoreColumn_MPIDense(Mat A,PetscScalar **vals)
163186aefd0dSHong Zhang {
163286aefd0dSHong Zhang   Mat_MPIDense   *mat = (Mat_MPIDense*)A->data;
163386aefd0dSHong Zhang   PetscErrorCode ierr;
163486aefd0dSHong Zhang 
163586aefd0dSHong Zhang   PetscFunctionBegin;
163686aefd0dSHong Zhang   ierr = MatDenseRestoreColumn(mat->A,vals);CHKERRQ(ierr);
163786aefd0dSHong Zhang   PetscFunctionReturn(0);
163886aefd0dSHong Zhang }
163986aefd0dSHong Zhang 
164094e2cb23SJakub Kruzik PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIDense(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat)
164194e2cb23SJakub Kruzik {
164294e2cb23SJakub Kruzik   PetscErrorCode ierr;
164394e2cb23SJakub Kruzik   Mat_MPIDense   *mat;
164494e2cb23SJakub Kruzik   PetscInt       m,nloc,N;
164594e2cb23SJakub Kruzik 
164694e2cb23SJakub Kruzik   PetscFunctionBegin;
164794e2cb23SJakub Kruzik   ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr);
164894e2cb23SJakub Kruzik   ierr = MatGetLocalSize(inmat,NULL,&nloc);CHKERRQ(ierr);
164994e2cb23SJakub Kruzik   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
165094e2cb23SJakub Kruzik     PetscInt sum;
165194e2cb23SJakub Kruzik 
165294e2cb23SJakub Kruzik     if (n == PETSC_DECIDE) {
165394e2cb23SJakub Kruzik       ierr = PetscSplitOwnership(comm,&n,&N);CHKERRQ(ierr);
165494e2cb23SJakub Kruzik     }
165594e2cb23SJakub Kruzik     /* Check sum(n) = N */
1656820f2d46SBarry Smith     ierr = MPIU_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm);CHKERRMPI(ierr);
165794e2cb23SJakub Kruzik     if (sum != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns %D != global columns %D",sum,N);
165894e2cb23SJakub Kruzik 
165994e2cb23SJakub Kruzik     ierr = MatCreateDense(comm,m,n,PETSC_DETERMINE,N,NULL,outmat);CHKERRQ(ierr);
1660f2e2784eSPierre Jolivet     ierr = MatSetOption(*outmat,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE);CHKERRQ(ierr);
166194e2cb23SJakub Kruzik   }
166294e2cb23SJakub Kruzik 
166394e2cb23SJakub Kruzik   /* numeric phase */
166494e2cb23SJakub Kruzik   mat = (Mat_MPIDense*)(*outmat)->data;
166594e2cb23SJakub Kruzik   ierr = MatCopy(inmat,mat->A,SAME_NONZERO_PATTERN);CHKERRQ(ierr);
166694e2cb23SJakub Kruzik   ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
166794e2cb23SJakub Kruzik   ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
166894e2cb23SJakub Kruzik   PetscFunctionReturn(0);
166994e2cb23SJakub Kruzik }
167094e2cb23SJakub Kruzik 
1671637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA)
1672637a0070SStefano Zampini PetscErrorCode MatConvert_MPIDenseCUDA_MPIDense(Mat M,MatType type,MatReuse reuse,Mat *newmat)
1673637a0070SStefano Zampini {
1674637a0070SStefano Zampini   Mat            B;
1675637a0070SStefano Zampini   Mat_MPIDense   *m;
1676637a0070SStefano Zampini   PetscErrorCode ierr;
1677637a0070SStefano Zampini 
1678637a0070SStefano Zampini   PetscFunctionBegin;
1679637a0070SStefano Zampini   if (reuse == MAT_INITIAL_MATRIX) {
1680637a0070SStefano Zampini     ierr = MatDuplicate(M,MAT_COPY_VALUES,newmat);CHKERRQ(ierr);
1681637a0070SStefano Zampini   } else if (reuse == MAT_REUSE_MATRIX) {
1682637a0070SStefano Zampini     ierr = MatCopy(M,*newmat,SAME_NONZERO_PATTERN);CHKERRQ(ierr);
1683637a0070SStefano Zampini   }
1684637a0070SStefano Zampini 
1685637a0070SStefano Zampini   B    = *newmat;
1686637a0070SStefano Zampini   ierr = MatBindToCPU_MPIDenseCUDA(B,PETSC_TRUE);CHKERRQ(ierr);
1687637a0070SStefano Zampini   ierr = PetscFree(B->defaultvectype);CHKERRQ(ierr);
1688637a0070SStefano Zampini   ierr = PetscStrallocpy(VECSTANDARD,&B->defaultvectype);CHKERRQ(ierr);
1689637a0070SStefano Zampini   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIDENSE);CHKERRQ(ierr);
1690637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpidensecuda_mpidense_C",NULL);CHKERRQ(ierr);
1691637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaij_mpidensecuda_C",NULL);CHKERRQ(ierr);
16926718818eSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaijcusparse_mpidensecuda_C",NULL);CHKERRQ(ierr);
1693637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaij_C",NULL);CHKERRQ(ierr);
16946718818eSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaijcusparse_C",NULL);CHKERRQ(ierr);
1695637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArray_C",NULL);CHKERRQ(ierr);
1696637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayRead_C",NULL);CHKERRQ(ierr);
1697637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayWrite_C",NULL);CHKERRQ(ierr);
1698637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArray_C",NULL);CHKERRQ(ierr);
1699637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayRead_C",NULL);CHKERRQ(ierr);
1700637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayWrite_C",NULL);CHKERRQ(ierr);
1701637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAPlaceArray_C",NULL);CHKERRQ(ierr);
1702637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAResetArray_C",NULL);CHKERRQ(ierr);
1703d5ea218eSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAReplaceArray_C",NULL);CHKERRQ(ierr);
1704637a0070SStefano Zampini   m    = (Mat_MPIDense*)(B)->data;
1705637a0070SStefano Zampini   if (m->A) {
1706637a0070SStefano Zampini     ierr = MatConvert(m->A,MATSEQDENSE,MAT_INPLACE_MATRIX,&m->A);CHKERRQ(ierr);
1707637a0070SStefano Zampini     ierr = MatSetUpMultiply_MPIDense(B);CHKERRQ(ierr);
1708637a0070SStefano Zampini   }
1709637a0070SStefano Zampini   B->ops->bindtocpu = NULL;
1710637a0070SStefano Zampini   B->offloadmask    = PETSC_OFFLOAD_CPU;
1711637a0070SStefano Zampini   PetscFunctionReturn(0);
1712637a0070SStefano Zampini }
1713637a0070SStefano Zampini 
1714637a0070SStefano Zampini PetscErrorCode MatConvert_MPIDense_MPIDenseCUDA(Mat M,MatType type,MatReuse reuse,Mat *newmat)
1715637a0070SStefano Zampini {
1716637a0070SStefano Zampini   Mat            B;
1717637a0070SStefano Zampini   Mat_MPIDense   *m;
1718637a0070SStefano Zampini   PetscErrorCode ierr;
1719637a0070SStefano Zampini 
1720637a0070SStefano Zampini   PetscFunctionBegin;
1721637a0070SStefano Zampini   if (reuse == MAT_INITIAL_MATRIX) {
1722637a0070SStefano Zampini     ierr = MatDuplicate(M,MAT_COPY_VALUES,newmat);CHKERRQ(ierr);
1723637a0070SStefano Zampini   } else if (reuse == MAT_REUSE_MATRIX) {
1724637a0070SStefano Zampini     ierr = MatCopy(M,*newmat,SAME_NONZERO_PATTERN);CHKERRQ(ierr);
1725637a0070SStefano Zampini   }
1726637a0070SStefano Zampini 
1727637a0070SStefano Zampini   B    = *newmat;
1728637a0070SStefano Zampini   ierr = PetscFree(B->defaultvectype);CHKERRQ(ierr);
1729637a0070SStefano Zampini   ierr = PetscStrallocpy(VECCUDA,&B->defaultvectype);CHKERRQ(ierr);
1730637a0070SStefano Zampini   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIDENSECUDA);CHKERRQ(ierr);
1731637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpidensecuda_mpidense_C",                    MatConvert_MPIDenseCUDA_MPIDense);CHKERRQ(ierr);
1732637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaij_mpidensecuda_C",        MatProductSetFromOptions_MPIAIJ_MPIDense);CHKERRQ(ierr);
17336718818eSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaijcusparse_mpidensecuda_C",MatProductSetFromOptions_MPIAIJ_MPIDense);CHKERRQ(ierr);
1734637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaij_C",        MatProductSetFromOptions_MPIDense_MPIAIJ);CHKERRQ(ierr);
17356718818eSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaijcusparse_C",MatProductSetFromOptions_MPIDense_MPIAIJ);CHKERRQ(ierr);
1736637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArray_C",                                MatDenseCUDAGetArray_MPIDenseCUDA);CHKERRQ(ierr);
1737637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayRead_C",                            MatDenseCUDAGetArrayRead_MPIDenseCUDA);CHKERRQ(ierr);
1738637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayWrite_C",                           MatDenseCUDAGetArrayWrite_MPIDenseCUDA);CHKERRQ(ierr);
1739637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArray_C",                            MatDenseCUDARestoreArray_MPIDenseCUDA);CHKERRQ(ierr);
1740637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayRead_C",                        MatDenseCUDARestoreArrayRead_MPIDenseCUDA);CHKERRQ(ierr);
1741637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayWrite_C",                       MatDenseCUDARestoreArrayWrite_MPIDenseCUDA);CHKERRQ(ierr);
1742637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAPlaceArray_C",                              MatDenseCUDAPlaceArray_MPIDenseCUDA);CHKERRQ(ierr);
1743637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAResetArray_C",                              MatDenseCUDAResetArray_MPIDenseCUDA);CHKERRQ(ierr);
1744d5ea218eSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAReplaceArray_C",                            MatDenseCUDAReplaceArray_MPIDenseCUDA);CHKERRQ(ierr);
1745f5ff9c66SStefano Zampini   m    = (Mat_MPIDense*)(B->data);
1746637a0070SStefano Zampini   if (m->A) {
1747637a0070SStefano Zampini     ierr = MatConvert(m->A,MATSEQDENSECUDA,MAT_INPLACE_MATRIX,&m->A);CHKERRQ(ierr);
1748637a0070SStefano Zampini     ierr = MatSetUpMultiply_MPIDense(B);CHKERRQ(ierr);
1749637a0070SStefano Zampini     B->offloadmask = PETSC_OFFLOAD_BOTH;
1750637a0070SStefano Zampini   } else {
1751637a0070SStefano Zampini     B->offloadmask = PETSC_OFFLOAD_UNALLOCATED;
1752637a0070SStefano Zampini   }
1753637a0070SStefano Zampini   ierr = MatBindToCPU_MPIDenseCUDA(B,PETSC_FALSE);CHKERRQ(ierr);
1754637a0070SStefano Zampini 
1755637a0070SStefano Zampini   B->ops->bindtocpu = MatBindToCPU_MPIDenseCUDA;
1756637a0070SStefano Zampini   PetscFunctionReturn(0);
1757637a0070SStefano Zampini }
1758637a0070SStefano Zampini #endif
1759637a0070SStefano Zampini 
17606947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVec_MPIDense(Mat A,PetscInt col,Vec *v)
17616947451fSStefano Zampini {
17626947451fSStefano Zampini   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
17636947451fSStefano Zampini   PetscErrorCode ierr;
17646947451fSStefano Zampini   PetscInt       lda;
17656947451fSStefano Zampini 
17666947451fSStefano Zampini   PetscFunctionBegin;
1767616b8fbbSStefano Zampini   if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first");
1768616b8fbbSStefano Zampini   if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first");
17696947451fSStefano Zampini   if (!a->cvec) {
17706947451fSStefano Zampini     ierr = VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr);
17716947451fSStefano Zampini   }
17726947451fSStefano Zampini   a->vecinuse = col + 1;
17736947451fSStefano Zampini   ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr);
17746947451fSStefano Zampini   ierr = MatDenseGetArray(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr);
17756947451fSStefano Zampini   ierr = VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr);
17766947451fSStefano Zampini   *v   = a->cvec;
17776947451fSStefano Zampini   PetscFunctionReturn(0);
17786947451fSStefano Zampini }
17796947451fSStefano Zampini 
17806947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVec_MPIDense(Mat A,PetscInt col,Vec *v)
17816947451fSStefano Zampini {
17826947451fSStefano Zampini   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
17836947451fSStefano Zampini   PetscErrorCode ierr;
17846947451fSStefano Zampini 
17856947451fSStefano Zampini   PetscFunctionBegin;
17865ea7661aSPierre Jolivet   if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first");
17876947451fSStefano Zampini   if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector");
17886947451fSStefano Zampini   a->vecinuse = 0;
17896947451fSStefano Zampini   ierr = MatDenseRestoreArray(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr);
17906947451fSStefano Zampini   ierr = VecResetArray(a->cvec);CHKERRQ(ierr);
17916947451fSStefano Zampini   *v   = NULL;
17926947451fSStefano Zampini   PetscFunctionReturn(0);
17936947451fSStefano Zampini }
17946947451fSStefano Zampini 
17956947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecRead_MPIDense(Mat A,PetscInt col,Vec *v)
17966947451fSStefano Zampini {
17976947451fSStefano Zampini   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
17986947451fSStefano Zampini   PetscErrorCode ierr;
17996947451fSStefano Zampini   PetscInt       lda;
18006947451fSStefano Zampini 
18016947451fSStefano Zampini   PetscFunctionBegin;
1802616b8fbbSStefano Zampini   if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first");
1803616b8fbbSStefano Zampini   if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first");
18046947451fSStefano Zampini   if (!a->cvec) {
18056947451fSStefano Zampini     ierr = VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr);
18066947451fSStefano Zampini   }
18076947451fSStefano Zampini   a->vecinuse = col + 1;
18086947451fSStefano Zampini   ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr);
18096947451fSStefano Zampini   ierr = MatDenseGetArrayRead(a->A,&a->ptrinuse);CHKERRQ(ierr);
18106947451fSStefano Zampini   ierr = VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr);
18116947451fSStefano Zampini   ierr = VecLockReadPush(a->cvec);CHKERRQ(ierr);
18126947451fSStefano Zampini   *v   = a->cvec;
18136947451fSStefano Zampini   PetscFunctionReturn(0);
18146947451fSStefano Zampini }
18156947451fSStefano Zampini 
18166947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecRead_MPIDense(Mat A,PetscInt col,Vec *v)
18176947451fSStefano Zampini {
18186947451fSStefano Zampini   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
18196947451fSStefano Zampini   PetscErrorCode ierr;
18206947451fSStefano Zampini 
18216947451fSStefano Zampini   PetscFunctionBegin;
1822616b8fbbSStefano Zampini   if (!a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first");
1823616b8fbbSStefano Zampini   if (!a->cvec) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector");
18246947451fSStefano Zampini   a->vecinuse = 0;
18256947451fSStefano Zampini   ierr = MatDenseRestoreArrayRead(a->A,&a->ptrinuse);CHKERRQ(ierr);
18266947451fSStefano Zampini   ierr = VecLockReadPop(a->cvec);CHKERRQ(ierr);
18276947451fSStefano Zampini   ierr = VecResetArray(a->cvec);CHKERRQ(ierr);
18286947451fSStefano Zampini   *v   = NULL;
18296947451fSStefano Zampini   PetscFunctionReturn(0);
18306947451fSStefano Zampini }
18316947451fSStefano Zampini 
18326947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecWrite_MPIDense(Mat A,PetscInt col,Vec *v)
18336947451fSStefano Zampini {
18346947451fSStefano Zampini   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
18356947451fSStefano Zampini   PetscErrorCode ierr;
18366947451fSStefano Zampini   PetscInt       lda;
18376947451fSStefano Zampini 
18386947451fSStefano Zampini   PetscFunctionBegin;
1839616b8fbbSStefano Zampini   if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first");
1840616b8fbbSStefano Zampini   if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first");
18416947451fSStefano Zampini   if (!a->cvec) {
18426947451fSStefano Zampini     ierr = VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr);
18436947451fSStefano Zampini   }
18446947451fSStefano Zampini   a->vecinuse = col + 1;
18456947451fSStefano Zampini   ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr);
18466947451fSStefano Zampini   ierr = MatDenseGetArrayWrite(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr);
18476947451fSStefano Zampini   ierr = VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr);
18486947451fSStefano Zampini   *v   = a->cvec;
18496947451fSStefano Zampini   PetscFunctionReturn(0);
18506947451fSStefano Zampini }
18516947451fSStefano Zampini 
18526947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDense(Mat A,PetscInt col,Vec *v)
18536947451fSStefano Zampini {
18546947451fSStefano Zampini   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
18556947451fSStefano Zampini   PetscErrorCode ierr;
18566947451fSStefano Zampini 
18576947451fSStefano Zampini   PetscFunctionBegin;
1858616b8fbbSStefano Zampini   if (!a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first");
1859616b8fbbSStefano Zampini   if (!a->cvec) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector");
18606947451fSStefano Zampini   a->vecinuse = 0;
18616947451fSStefano Zampini   ierr = MatDenseRestoreArrayWrite(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr);
18626947451fSStefano Zampini   ierr = VecResetArray(a->cvec);CHKERRQ(ierr);
18636947451fSStefano Zampini   *v   = NULL;
18646947451fSStefano Zampini   PetscFunctionReturn(0);
18656947451fSStefano Zampini }
18666947451fSStefano Zampini 
18675ea7661aSPierre Jolivet PetscErrorCode MatDenseGetSubMatrix_MPIDense(Mat A,PetscInt cbegin,PetscInt cend,Mat *v)
18685ea7661aSPierre Jolivet {
18695ea7661aSPierre Jolivet   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
1870616b8fbbSStefano Zampini   Mat_MPIDense   *c;
18715ea7661aSPierre Jolivet   PetscErrorCode ierr;
1872616b8fbbSStefano Zampini   MPI_Comm       comm;
1873616b8fbbSStefano Zampini   PetscBool      setup = PETSC_FALSE;
18745ea7661aSPierre Jolivet 
18755ea7661aSPierre Jolivet   PetscFunctionBegin;
1876616b8fbbSStefano Zampini   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
1877616b8fbbSStefano Zampini   if (a->vecinuse) SETERRQ(comm,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first");
1878616b8fbbSStefano Zampini   if (a->matinuse) SETERRQ(comm,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first");
18795ea7661aSPierre Jolivet   if (!a->cmat) {
1880616b8fbbSStefano Zampini     setup = PETSC_TRUE;
1881616b8fbbSStefano Zampini     ierr = MatCreate(comm,&a->cmat);CHKERRQ(ierr);
1882616b8fbbSStefano Zampini     ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)a->cmat);CHKERRQ(ierr);
1883616b8fbbSStefano Zampini     ierr = MatSetType(a->cmat,((PetscObject)A)->type_name);CHKERRQ(ierr);
1884616b8fbbSStefano Zampini     ierr = PetscLayoutReference(A->rmap,&a->cmat->rmap);CHKERRQ(ierr);
1885616b8fbbSStefano Zampini     ierr = PetscLayoutSetSize(a->cmat->cmap,cend-cbegin);CHKERRQ(ierr);
1886616b8fbbSStefano Zampini     ierr = PetscLayoutSetUp(a->cmat->cmap);CHKERRQ(ierr);
1887616b8fbbSStefano Zampini   } else if (cend-cbegin != a->cmat->cmap->N) {
1888616b8fbbSStefano Zampini     setup = PETSC_TRUE;
1889616b8fbbSStefano Zampini     ierr = PetscLayoutDestroy(&a->cmat->cmap);CHKERRQ(ierr);
1890616b8fbbSStefano Zampini     ierr = PetscLayoutCreate(comm,&a->cmat->cmap);CHKERRQ(ierr);
1891616b8fbbSStefano Zampini     ierr = PetscLayoutSetSize(a->cmat->cmap,cend-cbegin);CHKERRQ(ierr);
1892616b8fbbSStefano Zampini     ierr = PetscLayoutSetUp(a->cmat->cmap);CHKERRQ(ierr);
18935ea7661aSPierre Jolivet   }
1894616b8fbbSStefano Zampini   c = (Mat_MPIDense*)a->cmat->data;
1895616b8fbbSStefano Zampini   if (c->A) SETERRQ(comm,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first");
1896616b8fbbSStefano Zampini   ierr = MatDenseGetSubMatrix(a->A,cbegin,cend,&c->A);CHKERRQ(ierr);
1897616b8fbbSStefano Zampini   if (setup) { /* do we really need this? */
1898616b8fbbSStefano Zampini     ierr = MatSetUpMultiply_MPIDense(a->cmat);CHKERRQ(ierr);
1899616b8fbbSStefano Zampini   }
1900616b8fbbSStefano Zampini   a->cmat->preallocated = PETSC_TRUE;
1901616b8fbbSStefano Zampini   a->cmat->assembled = PETSC_TRUE;
19025ea7661aSPierre Jolivet   a->matinuse = cbegin + 1;
19035ea7661aSPierre Jolivet   *v = a->cmat;
19045ea7661aSPierre Jolivet   PetscFunctionReturn(0);
19055ea7661aSPierre Jolivet }
19065ea7661aSPierre Jolivet 
19075ea7661aSPierre Jolivet PetscErrorCode MatDenseRestoreSubMatrix_MPIDense(Mat A,Mat *v)
19085ea7661aSPierre Jolivet {
19095ea7661aSPierre Jolivet   Mat_MPIDense   *a = (Mat_MPIDense*)A->data;
1910616b8fbbSStefano Zampini   Mat_MPIDense   *c;
19115ea7661aSPierre Jolivet   PetscErrorCode ierr;
19125ea7661aSPierre Jolivet 
19135ea7661aSPierre Jolivet   PetscFunctionBegin;
1914616b8fbbSStefano Zampini   if (!a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetSubMatrix() first");
1915616b8fbbSStefano Zampini   if (!a->cmat) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal matrix");
1916616b8fbbSStefano Zampini   if (*v != a->cmat) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Not the matrix obtained from MatDenseGetSubMatrix()");
19175ea7661aSPierre Jolivet   a->matinuse = 0;
1918616b8fbbSStefano Zampini   c    = (Mat_MPIDense*)a->cmat->data;
1919616b8fbbSStefano Zampini   ierr = MatDenseRestoreSubMatrix(a->A,&c->A);CHKERRQ(ierr);
19205ea7661aSPierre Jolivet   *v   = NULL;
19215ea7661aSPierre Jolivet   PetscFunctionReturn(0);
19225ea7661aSPierre Jolivet }
19235ea7661aSPierre Jolivet 
1924002bc6daSRichard Tran Mills /*MC
1925002bc6daSRichard Tran Mills    MATMPIDENSE - MATMPIDENSE = "mpidense" - A matrix type to be used for distributed dense matrices.
1926002bc6daSRichard Tran Mills 
1927002bc6daSRichard Tran Mills    Options Database Keys:
1928002bc6daSRichard Tran Mills . -mat_type mpidense - sets the matrix type to "mpidense" during a call to MatSetFromOptions()
1929002bc6daSRichard Tran Mills 
1930002bc6daSRichard Tran Mills   Level: beginner
1931002bc6daSRichard Tran Mills 
1932002bc6daSRichard Tran Mills .seealso: MatCreateDense()
1933002bc6daSRichard Tran Mills 
1934002bc6daSRichard Tran Mills M*/
19358cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIDense(Mat mat)
1936273d9f13SBarry Smith {
1937273d9f13SBarry Smith   Mat_MPIDense   *a;
1938dfbe8321SBarry Smith   PetscErrorCode ierr;
1939273d9f13SBarry Smith 
1940273d9f13SBarry Smith   PetscFunctionBegin;
1941b00a9115SJed Brown   ierr      = PetscNewLog(mat,&a);CHKERRQ(ierr);
1942b0a32e0cSBarry Smith   mat->data = (void*)a;
1943273d9f13SBarry Smith   ierr      = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1944273d9f13SBarry Smith 
1945273d9f13SBarry Smith   mat->insertmode = NOT_SET_VALUES;
1946273d9f13SBarry Smith 
1947273d9f13SBarry Smith   /* build cache for off array entries formed */
1948273d9f13SBarry Smith   a->donotstash = PETSC_FALSE;
19492205254eSKarl Rupp 
1950ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)mat),1,&mat->stash);CHKERRQ(ierr);
1951273d9f13SBarry Smith 
1952273d9f13SBarry Smith   /* stuff used for matrix vector multiply */
1953f4259b30SLisandro Dalcin   a->lvec        = NULL;
1954f4259b30SLisandro Dalcin   a->Mvctx       = NULL;
1955273d9f13SBarry Smith   a->roworiented = PETSC_TRUE;
1956273d9f13SBarry Smith 
195749a6ff4bSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",MatDenseGetLDA_MPIDense);CHKERRQ(ierr);
1958ad16ce7aSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseSetLDA_C",MatDenseSetLDA_MPIDense);CHKERRQ(ierr);
1959bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",MatDenseGetArray_MPIDense);CHKERRQ(ierr);
19608572280aSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",MatDenseRestoreArray_MPIDense);CHKERRQ(ierr);
19618572280aSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",MatDenseGetArrayRead_MPIDense);CHKERRQ(ierr);
19628572280aSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",MatDenseRestoreArrayRead_MPIDense);CHKERRQ(ierr);
19636947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayWrite_C",MatDenseGetArrayWrite_MPIDense);CHKERRQ(ierr);
19646947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayWrite_C",MatDenseRestoreArrayWrite_MPIDense);CHKERRQ(ierr);
1965d3042a70SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",MatDensePlaceArray_MPIDense);CHKERRQ(ierr);
1966d3042a70SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",MatDenseResetArray_MPIDense);CHKERRQ(ierr);
1967d5ea218eSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseReplaceArray_C",MatDenseReplaceArray_MPIDense);CHKERRQ(ierr);
19686947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDense);CHKERRQ(ierr);
19696947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDense);CHKERRQ(ierr);
19706947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDense);CHKERRQ(ierr);
19716947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDense);CHKERRQ(ierr);
19726947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDense);CHKERRQ(ierr);
19736947451fSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDense);CHKERRQ(ierr);
19745ea7661aSPierre Jolivet   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetSubMatrix_C",MatDenseGetSubMatrix_MPIDense);CHKERRQ(ierr);
19755ea7661aSPierre Jolivet   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreSubMatrix_C",MatDenseRestoreSubMatrix_MPIDense);CHKERRQ(ierr);
19764e29119aSPierre Jolivet   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpiaij_mpidense_C",MatConvert_MPIAIJ_MPIDense);CHKERRQ(ierr);
19774e29119aSPierre Jolivet   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_mpiaij_C",MatConvert_MPIDense_MPIAIJ);CHKERRQ(ierr);
19788baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
19798baccfbdSHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",MatConvert_MPIDense_Elemental);CHKERRQ(ierr);
19808baccfbdSHong Zhang #endif
1981d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK)
1982d24d4204SJose E. Roman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_scalapack_C",MatConvert_Dense_ScaLAPACK);CHKERRQ(ierr);
1983d24d4204SJose E. Roman #endif
1984637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA)
1985637a0070SStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_mpidensecuda_C",MatConvert_MPIDense_MPIDenseCUDA);CHKERRQ(ierr);
1986637a0070SStefano Zampini #endif
1987bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",MatMPIDenseSetPreallocation_MPIDense);CHKERRQ(ierr);
19884222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaij_mpidense_C",MatProductSetFromOptions_MPIAIJ_MPIDense);CHKERRQ(ierr);
19894222ddf1SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaij_C",MatProductSetFromOptions_MPIDense_MPIAIJ);CHKERRQ(ierr);
19906718818eSStefano Zampini #if defined(PETSC_HAVE_CUDA)
19916718818eSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaijcusparse_mpidense_C",MatProductSetFromOptions_MPIAIJ_MPIDense);CHKERRQ(ierr);
19926718818eSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaijcusparse_C",MatProductSetFromOptions_MPIDense_MPIAIJ);CHKERRQ(ierr);
19936718818eSStefano Zampini #endif
19948949adfdSHong Zhang 
1995af53bab2SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",MatDenseGetColumn_MPIDense);CHKERRQ(ierr);
1996af53bab2SHong Zhang   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",MatDenseRestoreColumn_MPIDense);CHKERRQ(ierr);
199738aed534SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)mat,MATMPIDENSE);CHKERRQ(ierr);
1998273d9f13SBarry Smith   PetscFunctionReturn(0);
1999273d9f13SBarry Smith }
2000273d9f13SBarry Smith 
2001209238afSKris Buschelman /*MC
2002637a0070SStefano Zampini    MATMPIDENSECUDA - MATMPIDENSECUDA = "mpidensecuda" - A matrix type to be used for distributed dense matrices on GPUs.
2003637a0070SStefano Zampini 
2004637a0070SStefano Zampini    Options Database Keys:
2005637a0070SStefano Zampini . -mat_type mpidensecuda - sets the matrix type to "mpidensecuda" during a call to MatSetFromOptions()
2006637a0070SStefano Zampini 
2007637a0070SStefano Zampini   Level: beginner
2008637a0070SStefano Zampini 
2009637a0070SStefano Zampini .seealso:
2010637a0070SStefano Zampini 
2011637a0070SStefano Zampini M*/
2012637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA)
2013637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreate_MPIDenseCUDA(Mat B)
2014637a0070SStefano Zampini {
2015637a0070SStefano Zampini   PetscErrorCode ierr;
2016637a0070SStefano Zampini 
2017637a0070SStefano Zampini   PetscFunctionBegin;
201805035670SJunchao Zhang   ierr = PetscCUDAInitializeCheck();CHKERRQ(ierr);
2019637a0070SStefano Zampini   ierr = MatCreate_MPIDense(B);CHKERRQ(ierr);
2020637a0070SStefano Zampini   ierr = MatConvert_MPIDense_MPIDenseCUDA(B,MATMPIDENSECUDA,MAT_INPLACE_MATRIX,&B);CHKERRQ(ierr);
2021637a0070SStefano Zampini   PetscFunctionReturn(0);
2022637a0070SStefano Zampini }
2023637a0070SStefano Zampini #endif
2024637a0070SStefano Zampini 
2025637a0070SStefano Zampini /*MC
2026002d173eSKris Buschelman    MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices.
2027209238afSKris Buschelman 
2028209238afSKris Buschelman    This matrix type is identical to MATSEQDENSE when constructed with a single process communicator,
2029209238afSKris Buschelman    and MATMPIDENSE otherwise.
2030209238afSKris Buschelman 
2031209238afSKris Buschelman    Options Database Keys:
2032209238afSKris Buschelman . -mat_type dense - sets the matrix type to "dense" during a call to MatSetFromOptions()
2033209238afSKris Buschelman 
2034209238afSKris Buschelman   Level: beginner
2035209238afSKris Buschelman 
20366947451fSStefano Zampini .seealso: MATSEQDENSE,MATMPIDENSE,MATDENSECUDA
20376947451fSStefano Zampini M*/
20386947451fSStefano Zampini 
20396947451fSStefano Zampini /*MC
20406947451fSStefano Zampini    MATDENSECUDA - MATDENSECUDA = "densecuda" - A matrix type to be used for dense matrices on GPUs.
20416947451fSStefano Zampini 
20426947451fSStefano Zampini    This matrix type is identical to MATSEQDENSECUDA when constructed with a single process communicator,
20436947451fSStefano Zampini    and MATMPIDENSECUDA otherwise.
20446947451fSStefano Zampini 
20456947451fSStefano Zampini    Options Database Keys:
20466947451fSStefano Zampini . -mat_type densecuda - sets the matrix type to "densecuda" during a call to MatSetFromOptions()
20476947451fSStefano Zampini 
20486947451fSStefano Zampini   Level: beginner
20496947451fSStefano Zampini 
20506947451fSStefano Zampini .seealso: MATSEQDENSECUDA,MATMPIDENSECUDA,MATDENSE
2051209238afSKris Buschelman M*/
2052209238afSKris Buschelman 
2053273d9f13SBarry Smith /*@C
2054273d9f13SBarry Smith    MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries
2055273d9f13SBarry Smith 
20568f490ea3SStefano Zampini    Collective
2057273d9f13SBarry Smith 
2058273d9f13SBarry Smith    Input Parameters:
20591c4f3114SJed Brown .  B - the matrix
20600298fd71SBarry Smith -  data - optional location of matrix data.  Set data=NULL for PETSc
2061273d9f13SBarry Smith    to control all matrix memory allocation.
2062273d9f13SBarry Smith 
2063273d9f13SBarry Smith    Notes:
2064273d9f13SBarry Smith    The dense format is fully compatible with standard Fortran 77
2065273d9f13SBarry Smith    storage by columns.
2066273d9f13SBarry Smith 
2067273d9f13SBarry Smith    The data input variable is intended primarily for Fortran programmers
2068273d9f13SBarry Smith    who wish to allocate their own matrix memory space.  Most users should
20690298fd71SBarry Smith    set data=NULL.
2070273d9f13SBarry Smith 
2071273d9f13SBarry Smith    Level: intermediate
2072273d9f13SBarry Smith 
2073273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues()
2074273d9f13SBarry Smith @*/
20751c4f3114SJed Brown PetscErrorCode  MatMPIDenseSetPreallocation(Mat B,PetscScalar *data)
2076273d9f13SBarry Smith {
20774ac538c5SBarry Smith   PetscErrorCode ierr;
2078273d9f13SBarry Smith 
2079273d9f13SBarry Smith   PetscFunctionBegin;
2080d5ea218eSStefano Zampini   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
20811c4f3114SJed Brown   ierr = PetscTryMethod(B,"MatMPIDenseSetPreallocation_C",(Mat,PetscScalar*),(B,data));CHKERRQ(ierr);
2082273d9f13SBarry Smith   PetscFunctionReturn(0);
2083273d9f13SBarry Smith }
2084273d9f13SBarry Smith 
2085d3042a70SBarry Smith /*@
2086637a0070SStefano Zampini    MatDensePlaceArray - Allows one to replace the array in a dense matrix with an
2087d3042a70SBarry Smith    array provided by the user. This is useful to avoid copying an array
2088d3042a70SBarry Smith    into a matrix
2089d3042a70SBarry Smith 
2090d3042a70SBarry Smith    Not Collective
2091d3042a70SBarry Smith 
2092d3042a70SBarry Smith    Input Parameters:
2093d3042a70SBarry Smith +  mat - the matrix
2094d3042a70SBarry Smith -  array - the array in column major order
2095d3042a70SBarry Smith 
2096d3042a70SBarry Smith    Notes:
2097d3042a70SBarry Smith    You can return to the original array with a call to MatDenseResetArray(). The user is responsible for freeing this array; it will not be
2098d3042a70SBarry Smith    freed when the matrix is destroyed.
2099d3042a70SBarry Smith 
2100d3042a70SBarry Smith    Level: developer
2101d3042a70SBarry Smith 
2102d3042a70SBarry Smith .seealso: MatDenseGetArray(), MatDenseResetArray(), VecPlaceArray(), VecGetArray(), VecRestoreArray(), VecReplaceArray(), VecResetArray()
2103d3042a70SBarry Smith 
2104d3042a70SBarry Smith @*/
2105637a0070SStefano Zampini PetscErrorCode  MatDensePlaceArray(Mat mat,const PetscScalar *array)
2106d3042a70SBarry Smith {
2107d3042a70SBarry Smith   PetscErrorCode ierr;
2108637a0070SStefano Zampini 
2109d3042a70SBarry Smith   PetscFunctionBegin;
2110d5ea218eSStefano Zampini   PetscValidHeaderSpecific(mat,MAT_CLASSID,1);
2111d3042a70SBarry Smith   ierr = PetscUseMethod(mat,"MatDensePlaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr);
2112d3042a70SBarry Smith   ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr);
2113637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA)
2114637a0070SStefano Zampini   mat->offloadmask = PETSC_OFFLOAD_CPU;
2115637a0070SStefano Zampini #endif
2116d3042a70SBarry Smith   PetscFunctionReturn(0);
2117d3042a70SBarry Smith }
2118d3042a70SBarry Smith 
2119d3042a70SBarry Smith /*@
2120d3042a70SBarry Smith    MatDenseResetArray - Resets the matrix array to that it previously had before the call to MatDensePlaceArray()
2121d3042a70SBarry Smith 
2122d3042a70SBarry Smith    Not Collective
2123d3042a70SBarry Smith 
2124d3042a70SBarry Smith    Input Parameters:
2125d3042a70SBarry Smith .  mat - the matrix
2126d3042a70SBarry Smith 
2127d3042a70SBarry Smith    Notes:
2128d3042a70SBarry Smith    You can only call this after a call to MatDensePlaceArray()
2129d3042a70SBarry Smith 
2130d3042a70SBarry Smith    Level: developer
2131d3042a70SBarry Smith 
2132d3042a70SBarry Smith .seealso: MatDenseGetArray(), MatDensePlaceArray(), VecPlaceArray(), VecGetArray(), VecRestoreArray(), VecReplaceArray(), VecResetArray()
2133d3042a70SBarry Smith 
2134d3042a70SBarry Smith @*/
2135d3042a70SBarry Smith PetscErrorCode  MatDenseResetArray(Mat mat)
2136d3042a70SBarry Smith {
2137d3042a70SBarry Smith   PetscErrorCode ierr;
2138637a0070SStefano Zampini 
2139d3042a70SBarry Smith   PetscFunctionBegin;
2140d5ea218eSStefano Zampini   PetscValidHeaderSpecific(mat,MAT_CLASSID,1);
2141d3042a70SBarry Smith   ierr = PetscUseMethod(mat,"MatDenseResetArray_C",(Mat),(mat));CHKERRQ(ierr);
2142d3042a70SBarry Smith   ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr);
2143d3042a70SBarry Smith   PetscFunctionReturn(0);
2144d3042a70SBarry Smith }
2145d3042a70SBarry Smith 
2146d5ea218eSStefano Zampini /*@
2147d5ea218eSStefano Zampini    MatDenseReplaceArray - Allows one to replace the array in a dense matrix with an
2148d5ea218eSStefano Zampini    array provided by the user. This is useful to avoid copying an array
2149d5ea218eSStefano Zampini    into a matrix
2150d5ea218eSStefano Zampini 
2151d5ea218eSStefano Zampini    Not Collective
2152d5ea218eSStefano Zampini 
2153d5ea218eSStefano Zampini    Input Parameters:
2154d5ea218eSStefano Zampini +  mat - the matrix
2155d5ea218eSStefano Zampini -  array - the array in column major order
2156d5ea218eSStefano Zampini 
2157d5ea218eSStefano Zampini    Notes:
2158d5ea218eSStefano Zampini    The memory passed in MUST be obtained with PetscMalloc() and CANNOT be
2159d5ea218eSStefano Zampini    freed by the user. It will be freed when the matrix is destroyed.
2160d5ea218eSStefano Zampini 
2161d5ea218eSStefano Zampini    Level: developer
2162d5ea218eSStefano Zampini 
2163d5ea218eSStefano Zampini .seealso: MatDenseGetArray(), VecReplaceArray()
2164d5ea218eSStefano Zampini @*/
2165d5ea218eSStefano Zampini PetscErrorCode  MatDenseReplaceArray(Mat mat,const PetscScalar *array)
2166d5ea218eSStefano Zampini {
2167d5ea218eSStefano Zampini   PetscErrorCode ierr;
2168d5ea218eSStefano Zampini 
2169d5ea218eSStefano Zampini   PetscFunctionBegin;
2170d5ea218eSStefano Zampini   PetscValidHeaderSpecific(mat,MAT_CLASSID,1);
2171d5ea218eSStefano Zampini   ierr = PetscUseMethod(mat,"MatDenseReplaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr);
2172d5ea218eSStefano Zampini   ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr);
2173d5ea218eSStefano Zampini #if defined(PETSC_HAVE_CUDA)
2174d5ea218eSStefano Zampini   mat->offloadmask = PETSC_OFFLOAD_CPU;
2175d5ea218eSStefano Zampini #endif
2176d5ea218eSStefano Zampini   PetscFunctionReturn(0);
2177d5ea218eSStefano Zampini }
2178d5ea218eSStefano Zampini 
2179637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA)
21808965ea79SLois Curfman McInnes /*@C
2181637a0070SStefano Zampini    MatDenseCUDAPlaceArray - Allows one to replace the GPU array in a dense matrix with an
2182637a0070SStefano Zampini    array provided by the user. This is useful to avoid copying an array
2183637a0070SStefano Zampini    into a matrix
2184637a0070SStefano Zampini 
2185637a0070SStefano Zampini    Not Collective
2186637a0070SStefano Zampini 
2187637a0070SStefano Zampini    Input Parameters:
2188637a0070SStefano Zampini +  mat - the matrix
2189637a0070SStefano Zampini -  array - the array in column major order
2190637a0070SStefano Zampini 
2191637a0070SStefano Zampini    Notes:
2192637a0070SStefano Zampini    You can return to the original array with a call to MatDenseCUDAResetArray(). The user is responsible for freeing this array; it will not be
2193637a0070SStefano Zampini    freed when the matrix is destroyed. The array must have been allocated with cudaMalloc().
2194637a0070SStefano Zampini 
2195637a0070SStefano Zampini    Level: developer
2196637a0070SStefano Zampini 
2197637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDAResetArray()
2198637a0070SStefano Zampini @*/
2199637a0070SStefano Zampini PetscErrorCode  MatDenseCUDAPlaceArray(Mat mat,const PetscScalar *array)
2200637a0070SStefano Zampini {
2201637a0070SStefano Zampini   PetscErrorCode ierr;
2202637a0070SStefano Zampini 
2203637a0070SStefano Zampini   PetscFunctionBegin;
2204d5ea218eSStefano Zampini   PetscValidHeaderSpecific(mat,MAT_CLASSID,1);
2205637a0070SStefano Zampini   ierr = PetscUseMethod(mat,"MatDenseCUDAPlaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr);
2206637a0070SStefano Zampini   ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr);
2207637a0070SStefano Zampini   mat->offloadmask = PETSC_OFFLOAD_GPU;
2208637a0070SStefano Zampini   PetscFunctionReturn(0);
2209637a0070SStefano Zampini }
2210637a0070SStefano Zampini 
2211637a0070SStefano Zampini /*@C
2212637a0070SStefano Zampini    MatDenseCUDAResetArray - Resets the matrix array to that it previously had before the call to MatDenseCUDAPlaceArray()
2213637a0070SStefano Zampini 
2214637a0070SStefano Zampini    Not Collective
2215637a0070SStefano Zampini 
2216637a0070SStefano Zampini    Input Parameters:
2217637a0070SStefano Zampini .  mat - the matrix
2218637a0070SStefano Zampini 
2219637a0070SStefano Zampini    Notes:
2220637a0070SStefano Zampini    You can only call this after a call to MatDenseCUDAPlaceArray()
2221637a0070SStefano Zampini 
2222637a0070SStefano Zampini    Level: developer
2223637a0070SStefano Zampini 
2224637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDAPlaceArray()
2225637a0070SStefano Zampini 
2226637a0070SStefano Zampini @*/
2227637a0070SStefano Zampini PetscErrorCode  MatDenseCUDAResetArray(Mat mat)
2228637a0070SStefano Zampini {
2229637a0070SStefano Zampini   PetscErrorCode ierr;
2230637a0070SStefano Zampini 
2231637a0070SStefano Zampini   PetscFunctionBegin;
2232d5ea218eSStefano Zampini   PetscValidHeaderSpecific(mat,MAT_CLASSID,1);
2233637a0070SStefano Zampini   ierr = PetscUseMethod(mat,"MatDenseCUDAResetArray_C",(Mat),(mat));CHKERRQ(ierr);
2234637a0070SStefano Zampini   ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr);
2235637a0070SStefano Zampini   PetscFunctionReturn(0);
2236637a0070SStefano Zampini }
2237637a0070SStefano Zampini 
2238637a0070SStefano Zampini /*@C
2239d5ea218eSStefano Zampini    MatDenseCUDAReplaceArray - Allows one to replace the GPU array in a dense matrix with an
2240d5ea218eSStefano Zampini    array provided by the user. This is useful to avoid copying an array
2241d5ea218eSStefano Zampini    into a matrix
2242d5ea218eSStefano Zampini 
2243d5ea218eSStefano Zampini    Not Collective
2244d5ea218eSStefano Zampini 
2245d5ea218eSStefano Zampini    Input Parameters:
2246d5ea218eSStefano Zampini +  mat - the matrix
2247d5ea218eSStefano Zampini -  array - the array in column major order
2248d5ea218eSStefano Zampini 
2249d5ea218eSStefano Zampini    Notes:
2250d5ea218eSStefano Zampini    This permanently replaces the GPU array and frees the memory associated with the old GPU array.
2251d5ea218eSStefano Zampini    The memory passed in CANNOT be freed by the user. It will be freed
2252d5ea218eSStefano Zampini    when the matrix is destroyed. The array should respect the matrix leading dimension.
2253d5ea218eSStefano Zampini 
2254d5ea218eSStefano Zampini    Level: developer
2255d5ea218eSStefano Zampini 
2256d5ea218eSStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDAPlaceArray(), MatDenseCUDAResetArray()
2257d5ea218eSStefano Zampini @*/
2258d5ea218eSStefano Zampini PetscErrorCode  MatDenseCUDAReplaceArray(Mat mat,const PetscScalar *array)
2259d5ea218eSStefano Zampini {
2260d5ea218eSStefano Zampini   PetscErrorCode ierr;
2261d5ea218eSStefano Zampini 
2262d5ea218eSStefano Zampini   PetscFunctionBegin;
2263d5ea218eSStefano Zampini   PetscValidHeaderSpecific(mat,MAT_CLASSID,1);
2264d5ea218eSStefano Zampini   ierr = PetscUseMethod(mat,"MatDenseCUDAReplaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr);
2265d5ea218eSStefano Zampini   ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr);
2266d5ea218eSStefano Zampini   mat->offloadmask = PETSC_OFFLOAD_GPU;
2267d5ea218eSStefano Zampini   PetscFunctionReturn(0);
2268d5ea218eSStefano Zampini }
2269d5ea218eSStefano Zampini 
2270d5ea218eSStefano Zampini /*@C
2271637a0070SStefano Zampini    MatDenseCUDAGetArrayWrite - Provides write access to the CUDA buffer inside a dense matrix.
2272637a0070SStefano Zampini 
2273637a0070SStefano Zampini    Not Collective
2274637a0070SStefano Zampini 
2275637a0070SStefano Zampini    Input Parameters:
2276637a0070SStefano Zampini .  A - the matrix
2277637a0070SStefano Zampini 
2278637a0070SStefano Zampini    Output Parameters
2279637a0070SStefano Zampini .  array - the GPU array in column major order
2280637a0070SStefano Zampini 
2281637a0070SStefano Zampini    Notes:
2282637a0070SStefano Zampini    The data on the GPU may not be updated due to operations done on the CPU. If you need updated data, use MatDenseCUDAGetArray(). The array must be restored with MatDenseCUDARestoreArrayWrite() when no longer needed.
2283637a0070SStefano Zampini 
2284637a0070SStefano Zampini    Level: developer
2285637a0070SStefano Zampini 
2286637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayRead(), MatDenseCUDARestoreArrayRead()
2287637a0070SStefano Zampini @*/
2288637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArrayWrite(Mat A, PetscScalar **a)
2289637a0070SStefano Zampini {
2290637a0070SStefano Zampini   PetscErrorCode ierr;
2291637a0070SStefano Zampini 
2292637a0070SStefano Zampini   PetscFunctionBegin;
2293d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
2294637a0070SStefano Zampini   ierr = PetscUseMethod(A,"MatDenseCUDAGetArrayWrite_C",(Mat,PetscScalar**),(A,a));CHKERRQ(ierr);
2295637a0070SStefano Zampini   ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr);
2296637a0070SStefano Zampini   PetscFunctionReturn(0);
2297637a0070SStefano Zampini }
2298637a0070SStefano Zampini 
2299637a0070SStefano Zampini /*@C
2300637a0070SStefano Zampini    MatDenseCUDARestoreArrayWrite - Restore write access to the CUDA buffer inside a dense matrix previously obtained with MatDenseCUDAGetArrayWrite().
2301637a0070SStefano Zampini 
2302637a0070SStefano Zampini    Not Collective
2303637a0070SStefano Zampini 
2304637a0070SStefano Zampini    Input Parameters:
2305637a0070SStefano Zampini +  A - the matrix
2306637a0070SStefano Zampini -  array - the GPU array in column major order
2307637a0070SStefano Zampini 
2308637a0070SStefano Zampini    Notes:
2309637a0070SStefano Zampini 
2310637a0070SStefano Zampini    Level: developer
2311637a0070SStefano Zampini 
2312637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead(), MatDenseCUDAGetArrayRead()
2313637a0070SStefano Zampini @*/
2314637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArrayWrite(Mat A, PetscScalar **a)
2315637a0070SStefano Zampini {
2316637a0070SStefano Zampini   PetscErrorCode ierr;
2317637a0070SStefano Zampini 
2318637a0070SStefano Zampini   PetscFunctionBegin;
2319d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
2320637a0070SStefano Zampini   ierr = PetscUseMethod(A,"MatDenseCUDARestoreArrayWrite_C",(Mat,PetscScalar**),(A,a));CHKERRQ(ierr);
2321637a0070SStefano Zampini   ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr);
2322637a0070SStefano Zampini   A->offloadmask = PETSC_OFFLOAD_GPU;
2323637a0070SStefano Zampini   PetscFunctionReturn(0);
2324637a0070SStefano Zampini }
2325637a0070SStefano Zampini 
2326637a0070SStefano Zampini /*@C
2327637a0070SStefano Zampini    MatDenseCUDAGetArrayRead - Provides read-only access to the CUDA buffer inside a dense matrix. The array must be restored with MatDenseCUDARestoreArrayRead() when no longer needed.
2328637a0070SStefano Zampini 
2329637a0070SStefano Zampini    Not Collective
2330637a0070SStefano Zampini 
2331637a0070SStefano Zampini    Input Parameters:
2332637a0070SStefano Zampini .  A - the matrix
2333637a0070SStefano Zampini 
2334637a0070SStefano Zampini    Output Parameters
2335637a0070SStefano Zampini .  array - the GPU array in column major order
2336637a0070SStefano Zampini 
2337637a0070SStefano Zampini    Notes:
2338637a0070SStefano Zampini    Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite().
2339637a0070SStefano Zampini 
2340637a0070SStefano Zampini    Level: developer
2341637a0070SStefano Zampini 
2342637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead()
2343637a0070SStefano Zampini @*/
2344637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArrayRead(Mat A, const PetscScalar **a)
2345637a0070SStefano Zampini {
2346637a0070SStefano Zampini   PetscErrorCode ierr;
2347637a0070SStefano Zampini 
2348637a0070SStefano Zampini   PetscFunctionBegin;
2349d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
2350637a0070SStefano Zampini   ierr = PetscUseMethod(A,"MatDenseCUDAGetArrayRead_C",(Mat,const PetscScalar**),(A,a));CHKERRQ(ierr);
2351637a0070SStefano Zampini   PetscFunctionReturn(0);
2352637a0070SStefano Zampini }
2353637a0070SStefano Zampini 
2354637a0070SStefano Zampini /*@C
2355637a0070SStefano Zampini    MatDenseCUDARestoreArrayRead - Restore read-only access to the CUDA buffer inside a dense matrix previously obtained with a call to MatDenseCUDAGetArrayRead().
2356637a0070SStefano Zampini 
2357637a0070SStefano Zampini    Not Collective
2358637a0070SStefano Zampini 
2359637a0070SStefano Zampini    Input Parameters:
2360637a0070SStefano Zampini +  A - the matrix
2361637a0070SStefano Zampini -  array - the GPU array in column major order
2362637a0070SStefano Zampini 
2363637a0070SStefano Zampini    Notes:
2364637a0070SStefano Zampini    Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite().
2365637a0070SStefano Zampini 
2366637a0070SStefano Zampini    Level: developer
2367637a0070SStefano Zampini 
2368637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDAGetArrayRead()
2369637a0070SStefano Zampini @*/
2370637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArrayRead(Mat A, const PetscScalar **a)
2371637a0070SStefano Zampini {
2372637a0070SStefano Zampini   PetscErrorCode ierr;
2373637a0070SStefano Zampini 
2374637a0070SStefano Zampini   PetscFunctionBegin;
2375637a0070SStefano Zampini   ierr = PetscUseMethod(A,"MatDenseCUDARestoreArrayRead_C",(Mat,const PetscScalar**),(A,a));CHKERRQ(ierr);
2376637a0070SStefano Zampini   PetscFunctionReturn(0);
2377637a0070SStefano Zampini }
2378637a0070SStefano Zampini 
2379637a0070SStefano Zampini /*@C
2380637a0070SStefano Zampini    MatDenseCUDAGetArray - Provides access to the CUDA buffer inside a dense matrix. The array must be restored with MatDenseCUDARestoreArray() when no longer needed.
2381637a0070SStefano Zampini 
2382637a0070SStefano Zampini    Not Collective
2383637a0070SStefano Zampini 
2384637a0070SStefano Zampini    Input Parameters:
2385637a0070SStefano Zampini .  A - the matrix
2386637a0070SStefano Zampini 
2387637a0070SStefano Zampini    Output Parameters
2388637a0070SStefano Zampini .  array - the GPU array in column major order
2389637a0070SStefano Zampini 
2390637a0070SStefano Zampini    Notes:
2391637a0070SStefano Zampini    Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). For read-only access, use MatDenseCUDAGetArrayRead().
2392637a0070SStefano Zampini 
2393637a0070SStefano Zampini    Level: developer
2394637a0070SStefano Zampini 
2395637a0070SStefano Zampini .seealso: MatDenseCUDAGetArrayRead(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead()
2396637a0070SStefano Zampini @*/
2397637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArray(Mat A, PetscScalar **a)
2398637a0070SStefano Zampini {
2399637a0070SStefano Zampini   PetscErrorCode ierr;
2400637a0070SStefano Zampini 
2401637a0070SStefano Zampini   PetscFunctionBegin;
2402d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
2403637a0070SStefano Zampini   ierr = PetscUseMethod(A,"MatDenseCUDAGetArray_C",(Mat,PetscScalar**),(A,a));CHKERRQ(ierr);
2404637a0070SStefano Zampini   ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr);
2405637a0070SStefano Zampini   PetscFunctionReturn(0);
2406637a0070SStefano Zampini }
2407637a0070SStefano Zampini 
2408637a0070SStefano Zampini /*@C
2409637a0070SStefano Zampini    MatDenseCUDARestoreArray - Restore access to the CUDA buffer inside a dense matrix previously obtained with MatDenseCUDAGetArray().
2410637a0070SStefano Zampini 
2411637a0070SStefano Zampini    Not Collective
2412637a0070SStefano Zampini 
2413637a0070SStefano Zampini    Input Parameters:
2414637a0070SStefano Zampini +  A - the matrix
2415637a0070SStefano Zampini -  array - the GPU array in column major order
2416637a0070SStefano Zampini 
2417637a0070SStefano Zampini    Notes:
2418637a0070SStefano Zampini 
2419637a0070SStefano Zampini    Level: developer
2420637a0070SStefano Zampini 
2421637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead(), MatDenseCUDAGetArrayRead()
2422637a0070SStefano Zampini @*/
2423637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArray(Mat A, PetscScalar **a)
2424637a0070SStefano Zampini {
2425637a0070SStefano Zampini   PetscErrorCode ierr;
2426637a0070SStefano Zampini 
2427637a0070SStefano Zampini   PetscFunctionBegin;
2428d5ea218eSStefano Zampini   PetscValidHeaderSpecific(A,MAT_CLASSID,1);
2429637a0070SStefano Zampini   ierr = PetscUseMethod(A,"MatDenseCUDARestoreArray_C",(Mat,PetscScalar**),(A,a));CHKERRQ(ierr);
2430637a0070SStefano Zampini   ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr);
2431637a0070SStefano Zampini   A->offloadmask = PETSC_OFFLOAD_GPU;
2432637a0070SStefano Zampini   PetscFunctionReturn(0);
2433637a0070SStefano Zampini }
2434637a0070SStefano Zampini #endif
2435637a0070SStefano Zampini 
2436637a0070SStefano Zampini /*@C
2437637a0070SStefano Zampini    MatCreateDense - Creates a matrix in dense format.
24388965ea79SLois Curfman McInnes 
2439d083f849SBarry Smith    Collective
2440db81eaa0SLois Curfman McInnes 
24418965ea79SLois Curfman McInnes    Input Parameters:
2442db81eaa0SLois Curfman McInnes +  comm - MPI communicator
24438965ea79SLois Curfman McInnes .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
2444db81eaa0SLois Curfman McInnes .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
24458965ea79SLois Curfman McInnes .  M - number of global rows (or PETSC_DECIDE to have calculated if m is given)
2446db81eaa0SLois Curfman McInnes .  N - number of global columns (or PETSC_DECIDE to have calculated if n is given)
24476cfe35ddSJose E. Roman -  data - optional location of matrix data.  Set data=NULL (PETSC_NULL_SCALAR for Fortran users) for PETSc
2448dfc5480cSLois Curfman McInnes    to control all matrix memory allocation.
24498965ea79SLois Curfman McInnes 
24508965ea79SLois Curfman McInnes    Output Parameter:
2451477f1c0bSLois Curfman McInnes .  A - the matrix
24528965ea79SLois Curfman McInnes 
2453b259b22eSLois Curfman McInnes    Notes:
245439ddd567SLois Curfman McInnes    The dense format is fully compatible with standard Fortran 77
245539ddd567SLois Curfman McInnes    storage by columns.
2456002bc6daSRichard Tran Mills    Note that, although local portions of the matrix are stored in column-major
2457002bc6daSRichard Tran Mills    order, the matrix is partitioned across MPI ranks by row.
24588965ea79SLois Curfman McInnes 
245918f449edSLois Curfman McInnes    The data input variable is intended primarily for Fortran programmers
246018f449edSLois Curfman McInnes    who wish to allocate their own matrix memory space.  Most users should
24616cfe35ddSJose E. Roman    set data=NULL (PETSC_NULL_SCALAR for Fortran users).
246218f449edSLois Curfman McInnes 
24638965ea79SLois Curfman McInnes    The user MUST specify either the local or global matrix dimensions
24648965ea79SLois Curfman McInnes    (possibly both).
24658965ea79SLois Curfman McInnes 
2466027ccd11SLois Curfman McInnes    Level: intermediate
2467027ccd11SLois Curfman McInnes 
246839ddd567SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues()
24698965ea79SLois Curfman McInnes @*/
247069b1f4b7SBarry Smith PetscErrorCode  MatCreateDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A)
24718965ea79SLois Curfman McInnes {
24726849ba73SBarry Smith   PetscErrorCode ierr;
247313f74950SBarry Smith   PetscMPIInt    size;
24748965ea79SLois Curfman McInnes 
24753a40ed3dSBarry Smith   PetscFunctionBegin;
2476f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2477f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2478ffc4695bSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr);
2479273d9f13SBarry Smith   if (size > 1) {
24808f490ea3SStefano Zampini     PetscBool havedata = (PetscBool)!!data;
24818f490ea3SStefano Zampini 
2482273d9f13SBarry Smith     ierr = MatSetType(*A,MATMPIDENSE);CHKERRQ(ierr);
2483273d9f13SBarry Smith     ierr = MatMPIDenseSetPreallocation(*A,data);CHKERRQ(ierr);
2484820f2d46SBarry Smith     ierr = MPIU_Allreduce(MPI_IN_PLACE,&havedata,1,MPIU_BOOL,MPI_LOR,comm);CHKERRMPI(ierr);
24858f490ea3SStefano Zampini     if (havedata) {  /* user provided data array, so no need to assemble */
24866cfe35ddSJose E. Roman       ierr = MatSetUpMultiply_MPIDense(*A);CHKERRQ(ierr);
24876cfe35ddSJose E. Roman       (*A)->assembled = PETSC_TRUE;
24886cfe35ddSJose E. Roman     }
2489273d9f13SBarry Smith   } else {
2490273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr);
2491273d9f13SBarry Smith     ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr);
24928c469469SLois Curfman McInnes   }
24933a40ed3dSBarry Smith   PetscFunctionReturn(0);
24948965ea79SLois Curfman McInnes }
24958965ea79SLois Curfman McInnes 
2496637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA)
2497637a0070SStefano Zampini /*@C
2498637a0070SStefano Zampini    MatCreateDenseCUDA - Creates a matrix in dense format using CUDA.
2499637a0070SStefano Zampini 
2500637a0070SStefano Zampini    Collective
2501637a0070SStefano Zampini 
2502637a0070SStefano Zampini    Input Parameters:
2503637a0070SStefano Zampini +  comm - MPI communicator
2504637a0070SStefano Zampini .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
2505637a0070SStefano Zampini .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
2506637a0070SStefano Zampini .  M - number of global rows (or PETSC_DECIDE to have calculated if m is given)
2507637a0070SStefano Zampini .  N - number of global columns (or PETSC_DECIDE to have calculated if n is given)
2508637a0070SStefano Zampini -  data - optional location of GPU matrix data.  Set data=NULL for PETSc
2509637a0070SStefano Zampini    to control matrix memory allocation.
2510637a0070SStefano Zampini 
2511637a0070SStefano Zampini    Output Parameter:
2512637a0070SStefano Zampini .  A - the matrix
2513637a0070SStefano Zampini 
2514637a0070SStefano Zampini    Notes:
2515637a0070SStefano Zampini 
2516637a0070SStefano Zampini    Level: intermediate
2517637a0070SStefano Zampini 
2518637a0070SStefano Zampini .seealso: MatCreate(), MatCreateDense()
2519637a0070SStefano Zampini @*/
2520637a0070SStefano Zampini PetscErrorCode  MatCreateDenseCUDA(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A)
2521637a0070SStefano Zampini {
2522637a0070SStefano Zampini   PetscErrorCode ierr;
2523637a0070SStefano Zampini   PetscMPIInt    size;
2524637a0070SStefano Zampini 
2525637a0070SStefano Zampini   PetscFunctionBegin;
2526637a0070SStefano Zampini   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2527637a0070SStefano Zampini   PetscValidLogicalCollectiveBool(*A,!!data,6);
2528637a0070SStefano Zampini   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2529ffc4695bSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr);
2530637a0070SStefano Zampini   if (size > 1) {
2531637a0070SStefano Zampini     ierr = MatSetType(*A,MATMPIDENSECUDA);CHKERRQ(ierr);
2532637a0070SStefano Zampini     ierr = MatMPIDenseCUDASetPreallocation(*A,data);CHKERRQ(ierr);
2533637a0070SStefano Zampini     if (data) {  /* user provided data array, so no need to assemble */
2534637a0070SStefano Zampini       ierr = MatSetUpMultiply_MPIDense(*A);CHKERRQ(ierr);
2535637a0070SStefano Zampini       (*A)->assembled = PETSC_TRUE;
2536637a0070SStefano Zampini     }
2537637a0070SStefano Zampini   } else {
2538637a0070SStefano Zampini     ierr = MatSetType(*A,MATSEQDENSECUDA);CHKERRQ(ierr);
2539637a0070SStefano Zampini     ierr = MatSeqDenseCUDASetPreallocation(*A,data);CHKERRQ(ierr);
2540637a0070SStefano Zampini   }
2541637a0070SStefano Zampini   PetscFunctionReturn(0);
2542637a0070SStefano Zampini }
2543637a0070SStefano Zampini #endif
2544637a0070SStefano Zampini 
25456849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat)
25468965ea79SLois Curfman McInnes {
25478965ea79SLois Curfman McInnes   Mat            mat;
25483501a2bdSLois Curfman McInnes   Mat_MPIDense   *a,*oldmat = (Mat_MPIDense*)A->data;
2549dfbe8321SBarry Smith   PetscErrorCode ierr;
25508965ea79SLois Curfman McInnes 
25513a40ed3dSBarry Smith   PetscFunctionBegin;
2552f4259b30SLisandro Dalcin   *newmat = NULL;
2553ce94432eSBarry Smith   ierr    = MatCreate(PetscObjectComm((PetscObject)A),&mat);CHKERRQ(ierr);
2554d0f46423SBarry Smith   ierr    = MatSetSizes(mat,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
25557adad957SLisandro Dalcin   ierr    = MatSetType(mat,((PetscObject)A)->type_name);CHKERRQ(ierr);
2556834f8fabSBarry Smith   a       = (Mat_MPIDense*)mat->data;
25575aa7edbeSHong Zhang 
2558d5f3da31SBarry Smith   mat->factortype   = A->factortype;
2559c456f294SBarry Smith   mat->assembled    = PETSC_TRUE;
2560273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
25618965ea79SLois Curfman McInnes 
2562e0fa3b82SLois Curfman McInnes   mat->insertmode = NOT_SET_VALUES;
25633782ba37SSatish Balay   a->donotstash   = oldmat->donotstash;
2564e04c1aa4SHong Zhang 
25651e1e43feSBarry Smith   ierr = PetscLayoutReference(A->rmap,&mat->rmap);CHKERRQ(ierr);
25661e1e43feSBarry Smith   ierr = PetscLayoutReference(A->cmap,&mat->cmap);CHKERRQ(ierr);
25678965ea79SLois Curfman McInnes 
25685609ef8eSBarry Smith   ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
25693bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr);
2570637a0070SStefano Zampini   ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr);
257101b82886SBarry Smith 
25728965ea79SLois Curfman McInnes   *newmat = mat;
25733a40ed3dSBarry Smith   PetscFunctionReturn(0);
25748965ea79SLois Curfman McInnes }
25758965ea79SLois Curfman McInnes 
2576eb91f321SVaclav Hapla PetscErrorCode MatLoad_MPIDense(Mat newMat, PetscViewer viewer)
2577eb91f321SVaclav Hapla {
2578eb91f321SVaclav Hapla   PetscErrorCode ierr;
257987d5ce66SSatish Balay   PetscBool      isbinary;
258087d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5)
258187d5ce66SSatish Balay   PetscBool      ishdf5;
258287d5ce66SSatish Balay #endif
2583eb91f321SVaclav Hapla 
2584eb91f321SVaclav Hapla   PetscFunctionBegin;
2585eb91f321SVaclav Hapla   PetscValidHeaderSpecific(newMat,MAT_CLASSID,1);
2586eb91f321SVaclav Hapla   PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2);
2587eb91f321SVaclav Hapla   /* force binary viewer to load .info file if it has not yet done so */
2588eb91f321SVaclav Hapla   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
2589eb91f321SVaclav Hapla   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
259087d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5)
2591eb91f321SVaclav Hapla   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERHDF5,  &ishdf5);CHKERRQ(ierr);
259287d5ce66SSatish Balay #endif
2593eb91f321SVaclav Hapla   if (isbinary) {
25948491ab44SLisandro Dalcin     ierr = MatLoad_Dense_Binary(newMat,viewer);CHKERRQ(ierr);
2595eb91f321SVaclav Hapla #if defined(PETSC_HAVE_HDF5)
259687d5ce66SSatish Balay   } else if (ishdf5) {
2597eb91f321SVaclav Hapla     ierr = MatLoad_Dense_HDF5(newMat,viewer);CHKERRQ(ierr);
2598eb91f321SVaclav Hapla #endif
259987d5ce66SSatish Balay   } else SETERRQ2(PetscObjectComm((PetscObject)newMat),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)newMat)->type_name);
2600eb91f321SVaclav Hapla   PetscFunctionReturn(0);
2601eb91f321SVaclav Hapla }
2602eb91f321SVaclav Hapla 
26036718818eSStefano Zampini static PetscErrorCode MatEqual_MPIDense(Mat A,Mat B,PetscBool  *flag)
26046e4ee0c6SHong Zhang {
26056e4ee0c6SHong Zhang   Mat_MPIDense   *matB = (Mat_MPIDense*)B->data,*matA = (Mat_MPIDense*)A->data;
26066e4ee0c6SHong Zhang   Mat            a,b;
2607ace3abfcSBarry Smith   PetscBool      flg;
26086e4ee0c6SHong Zhang   PetscErrorCode ierr;
260990ace30eSBarry Smith 
26106e4ee0c6SHong Zhang   PetscFunctionBegin;
26116e4ee0c6SHong Zhang   a    = matA->A;
26126e4ee0c6SHong Zhang   b    = matB->A;
26136e4ee0c6SHong Zhang   ierr = MatEqual(a,b,&flg);CHKERRQ(ierr);
2614820f2d46SBarry Smith   ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRMPI(ierr);
26156e4ee0c6SHong Zhang   PetscFunctionReturn(0);
26166e4ee0c6SHong Zhang }
261790ace30eSBarry Smith 
26186718818eSStefano Zampini PetscErrorCode MatDestroy_MatTransMatMult_MPIDense_MPIDense(void *data)
2619baa3c1c6SHong Zhang {
2620baa3c1c6SHong Zhang   PetscErrorCode        ierr;
26216718818eSStefano Zampini   Mat_TransMatMultDense *atb = (Mat_TransMatMultDense *)data;
2622baa3c1c6SHong Zhang 
2623baa3c1c6SHong Zhang   PetscFunctionBegin;
2624637a0070SStefano Zampini   ierr = PetscFree2(atb->sendbuf,atb->recvcounts);CHKERRQ(ierr);
2625637a0070SStefano Zampini   ierr = MatDestroy(&atb->atb);CHKERRQ(ierr);
2626baa3c1c6SHong Zhang   ierr = PetscFree(atb);CHKERRQ(ierr);
2627baa3c1c6SHong Zhang   PetscFunctionReturn(0);
2628baa3c1c6SHong Zhang }
2629baa3c1c6SHong Zhang 
26306718818eSStefano Zampini PetscErrorCode MatDestroy_MatMatTransMult_MPIDense_MPIDense(void *data)
2631cc48ffa7SToby Isaac {
2632cc48ffa7SToby Isaac   PetscErrorCode        ierr;
26336718818eSStefano Zampini   Mat_MatTransMultDense *abt = (Mat_MatTransMultDense *)data;
2634cc48ffa7SToby Isaac 
2635cc48ffa7SToby Isaac   PetscFunctionBegin;
2636cc48ffa7SToby Isaac   ierr = PetscFree2(abt->buf[0],abt->buf[1]);CHKERRQ(ierr);
2637faa55883SToby Isaac   ierr = PetscFree2(abt->recvcounts,abt->recvdispls);CHKERRQ(ierr);
2638cc48ffa7SToby Isaac   ierr = PetscFree(abt);CHKERRQ(ierr);
2639cc48ffa7SToby Isaac   PetscFunctionReturn(0);
2640cc48ffa7SToby Isaac }
2641cc48ffa7SToby Isaac 
26426718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C)
2643cb20be35SHong Zhang {
2644baa3c1c6SHong Zhang   Mat_MPIDense          *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data;
26456718818eSStefano Zampini   Mat_TransMatMultDense *atb;
2646cb20be35SHong Zhang   PetscErrorCode        ierr;
2647cb20be35SHong Zhang   MPI_Comm              comm;
26486718818eSStefano Zampini   PetscMPIInt           size,*recvcounts;
26496718818eSStefano Zampini   PetscScalar           *carray,*sendbuf;
2650637a0070SStefano Zampini   const PetscScalar     *atbarray;
2651d5017740SHong Zhang   PetscInt              i,cN=C->cmap->N,cM=C->rmap->N,proc,k,j;
2652e68c0b26SHong Zhang   const PetscInt        *ranges;
2653cb20be35SHong Zhang 
2654cb20be35SHong Zhang   PetscFunctionBegin;
26556718818eSStefano Zampini   MatCheckProduct(C,3);
26566718818eSStefano Zampini   if (!C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty");
26576718818eSStefano Zampini   atb = (Mat_TransMatMultDense *)C->product->data;
26586718818eSStefano Zampini   recvcounts = atb->recvcounts;
26596718818eSStefano Zampini   sendbuf = atb->sendbuf;
26606718818eSStefano Zampini 
2661cb20be35SHong Zhang   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
2662ffc4695bSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr);
2663e68c0b26SHong Zhang 
2664c5ef1628SHong Zhang   /* compute atbarray = aseq^T * bseq */
2665637a0070SStefano Zampini   ierr = MatTransposeMatMult(a->A,b->A,atb->atb ? MAT_REUSE_MATRIX : MAT_INITIAL_MATRIX,PETSC_DEFAULT,&atb->atb);CHKERRQ(ierr);
2666cb20be35SHong Zhang 
2667cb20be35SHong Zhang   ierr = MatGetOwnershipRanges(C,&ranges);CHKERRQ(ierr);
2668cb20be35SHong Zhang 
2669660d5466SHong Zhang   /* arrange atbarray into sendbuf */
2670637a0070SStefano Zampini   ierr = MatDenseGetArrayRead(atb->atb,&atbarray);CHKERRQ(ierr);
2671637a0070SStefano Zampini   for (proc=0, k=0; proc<size; proc++) {
2672baa3c1c6SHong Zhang     for (j=0; j<cN; j++) {
2673c5ef1628SHong Zhang       for (i=ranges[proc]; i<ranges[proc+1]; i++) sendbuf[k++] = atbarray[i+j*cM];
2674cb20be35SHong Zhang     }
2675cb20be35SHong Zhang   }
2676637a0070SStefano Zampini   ierr = MatDenseRestoreArrayRead(atb->atb,&atbarray);CHKERRQ(ierr);
2677637a0070SStefano Zampini 
2678c5ef1628SHong Zhang   /* sum all atbarray to local values of C */
26790acaeb71SStefano Zampini   ierr = MatDenseGetArrayWrite(c->A,&carray);CHKERRQ(ierr);
2680ffc4695bSBarry Smith   ierr = MPI_Reduce_scatter(sendbuf,carray,recvcounts,MPIU_SCALAR,MPIU_SUM,comm);CHKERRMPI(ierr);
26810acaeb71SStefano Zampini   ierr = MatDenseRestoreArrayWrite(c->A,&carray);CHKERRQ(ierr);
26820acaeb71SStefano Zampini   ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
26830acaeb71SStefano Zampini   ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2684cb20be35SHong Zhang   PetscFunctionReturn(0);
2685cb20be35SHong Zhang }
2686cb20be35SHong Zhang 
26876718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat C)
2688cb20be35SHong Zhang {
2689cb20be35SHong Zhang   PetscErrorCode        ierr;
2690cb20be35SHong Zhang   MPI_Comm              comm;
2691baa3c1c6SHong Zhang   PetscMPIInt           size;
2692660d5466SHong Zhang   PetscInt              cm=A->cmap->n,cM,cN=B->cmap->N;
2693baa3c1c6SHong Zhang   Mat_TransMatMultDense *atb;
26946718818eSStefano Zampini   PetscBool             cisdense;
26950acaeb71SStefano Zampini   PetscInt              i;
26960acaeb71SStefano Zampini   const PetscInt        *ranges;
2697cb20be35SHong Zhang 
2698cb20be35SHong Zhang   PetscFunctionBegin;
26996718818eSStefano Zampini   MatCheckProduct(C,3);
27006718818eSStefano Zampini   if (C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty");
2701baa3c1c6SHong Zhang   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
2702cb20be35SHong Zhang   if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) {
2703cb20be35SHong Zhang     SETERRQ4(comm,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != B (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend);
2704cb20be35SHong Zhang   }
2705cb20be35SHong Zhang 
27064222ddf1SHong Zhang   /* create matrix product C */
27076718818eSStefano Zampini   ierr = MatSetSizes(C,cm,B->cmap->n,A->cmap->N,B->cmap->N);CHKERRQ(ierr);
27086718818eSStefano Zampini   ierr = PetscObjectTypeCompareAny((PetscObject)C,&cisdense,MATMPIDENSE,MATMPIDENSECUDA,"");CHKERRQ(ierr);
27096718818eSStefano Zampini   if (!cisdense) {
27106718818eSStefano Zampini     ierr = MatSetType(C,((PetscObject)A)->type_name);CHKERRQ(ierr);
27116718818eSStefano Zampini   }
271218992e5dSStefano Zampini   ierr = MatSetUp(C);CHKERRQ(ierr);
2713baa3c1c6SHong Zhang 
27144222ddf1SHong Zhang   /* create data structure for reuse C */
2715ffc4695bSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr);
2716baa3c1c6SHong Zhang   ierr = PetscNew(&atb);CHKERRQ(ierr);
27174222ddf1SHong Zhang   cM   = C->rmap->N;
27186718818eSStefano Zampini   ierr = PetscMalloc2((size_t)cM*(size_t)cN,&atb->sendbuf,size,&atb->recvcounts);CHKERRQ(ierr);
27190acaeb71SStefano Zampini   ierr = MatGetOwnershipRanges(C,&ranges);CHKERRQ(ierr);
27200acaeb71SStefano Zampini   for (i=0; i<size; i++) atb->recvcounts[i] = (ranges[i+1] - ranges[i])*cN;
2721baa3c1c6SHong Zhang 
27226718818eSStefano Zampini   C->product->data    = atb;
27236718818eSStefano Zampini   C->product->destroy = MatDestroy_MatTransMatMult_MPIDense_MPIDense;
2724cb20be35SHong Zhang   PetscFunctionReturn(0);
2725cb20be35SHong Zhang }
2726cb20be35SHong Zhang 
27274222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat A, Mat B, PetscReal fill, Mat C)
2728cb20be35SHong Zhang {
2729cb20be35SHong Zhang   PetscErrorCode        ierr;
2730cc48ffa7SToby Isaac   MPI_Comm              comm;
2731cc48ffa7SToby Isaac   PetscMPIInt           i, size;
2732cc48ffa7SToby Isaac   PetscInt              maxRows, bufsiz;
2733cc48ffa7SToby Isaac   PetscMPIInt           tag;
27344222ddf1SHong Zhang   PetscInt              alg;
2735cc48ffa7SToby Isaac   Mat_MatTransMultDense *abt;
27364222ddf1SHong Zhang   Mat_Product           *product = C->product;
27374222ddf1SHong Zhang   PetscBool             flg;
2738cc48ffa7SToby Isaac 
2739cc48ffa7SToby Isaac   PetscFunctionBegin;
27406718818eSStefano Zampini   MatCheckProduct(C,4);
27416718818eSStefano Zampini   if (C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty");
27424222ddf1SHong Zhang   /* check local size of A and B */
2743637a0070SStefano Zampini   if (A->cmap->n != B->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local column dimensions are incompatible, A (%D) != B (%D)",A->cmap->n,B->cmap->n);
2744cc48ffa7SToby Isaac 
27454222ddf1SHong Zhang   ierr = PetscStrcmp(product->alg,"allgatherv",&flg);CHKERRQ(ierr);
2746637a0070SStefano Zampini   alg  = flg ? 0 : 1;
2747cc48ffa7SToby Isaac 
27484222ddf1SHong Zhang   /* setup matrix product C */
27494222ddf1SHong Zhang   ierr = MatSetSizes(C,A->rmap->n,B->rmap->n,A->rmap->N,B->rmap->N);CHKERRQ(ierr);
27504222ddf1SHong Zhang   ierr = MatSetType(C,MATMPIDENSE);CHKERRQ(ierr);
275118992e5dSStefano Zampini   ierr = MatSetUp(C);CHKERRQ(ierr);
27524222ddf1SHong Zhang   ierr = PetscObjectGetNewTag((PetscObject)C,&tag);CHKERRQ(ierr);
27534222ddf1SHong Zhang 
27544222ddf1SHong Zhang   /* create data structure for reuse C */
27554222ddf1SHong Zhang   ierr = PetscObjectGetComm((PetscObject)C,&comm);CHKERRQ(ierr);
2756ffc4695bSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr);
2757cc48ffa7SToby Isaac   ierr = PetscNew(&abt);CHKERRQ(ierr);
2758cc48ffa7SToby Isaac   abt->tag = tag;
2759faa55883SToby Isaac   abt->alg = alg;
2760faa55883SToby Isaac   switch (alg) {
27614222ddf1SHong Zhang   case 1: /* alg: "cyclic" */
2762cc48ffa7SToby Isaac     for (maxRows = 0, i = 0; i < size; i++) maxRows = PetscMax(maxRows, (B->rmap->range[i + 1] - B->rmap->range[i]));
2763cc48ffa7SToby Isaac     bufsiz = A->cmap->N * maxRows;
2764cc48ffa7SToby Isaac     ierr = PetscMalloc2(bufsiz,&(abt->buf[0]),bufsiz,&(abt->buf[1]));CHKERRQ(ierr);
2765faa55883SToby Isaac     break;
27664222ddf1SHong Zhang   default: /* alg: "allgatherv" */
2767faa55883SToby Isaac     ierr = PetscMalloc2(B->rmap->n * B->cmap->N, &(abt->buf[0]), B->rmap->N * B->cmap->N, &(abt->buf[1]));CHKERRQ(ierr);
2768faa55883SToby Isaac     ierr = PetscMalloc2(size,&(abt->recvcounts),size+1,&(abt->recvdispls));CHKERRQ(ierr);
2769faa55883SToby Isaac     for (i = 0; i <= size; i++) abt->recvdispls[i] = B->rmap->range[i] * A->cmap->N;
2770faa55883SToby Isaac     for (i = 0; i < size; i++) abt->recvcounts[i] = abt->recvdispls[i + 1] - abt->recvdispls[i];
2771faa55883SToby Isaac     break;
2772faa55883SToby Isaac   }
2773cc48ffa7SToby Isaac 
27746718818eSStefano Zampini   C->product->data    = abt;
27756718818eSStefano Zampini   C->product->destroy = MatDestroy_MatMatTransMult_MPIDense_MPIDense;
27764222ddf1SHong Zhang   C->ops->mattransposemultnumeric = MatMatTransposeMultNumeric_MPIDense_MPIDense;
2777cc48ffa7SToby Isaac   PetscFunctionReturn(0);
2778cc48ffa7SToby Isaac }
2779cc48ffa7SToby Isaac 
2780faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(Mat A, Mat B, Mat C)
2781cc48ffa7SToby Isaac {
2782cc48ffa7SToby Isaac   Mat_MPIDense          *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data;
27836718818eSStefano Zampini   Mat_MatTransMultDense *abt;
2784cc48ffa7SToby Isaac   PetscErrorCode        ierr;
2785cc48ffa7SToby Isaac   MPI_Comm              comm;
2786cc48ffa7SToby Isaac   PetscMPIInt           rank,size, sendsiz, recvsiz, sendto, recvfrom, recvisfrom;
2787f4259b30SLisandro Dalcin   PetscScalar           *sendbuf, *recvbuf=NULL, *cv;
2788cc48ffa7SToby Isaac   PetscInt              i,cK=A->cmap->N,k,j,bn;
2789cc48ffa7SToby Isaac   PetscScalar           _DOne=1.0,_DZero=0.0;
2790637a0070SStefano Zampini   const PetscScalar     *av,*bv;
279123fff9afSBarry Smith   PetscBLASInt          cm, cn, ck, alda, blda = 0, clda;
2792cc48ffa7SToby Isaac   MPI_Request           reqs[2];
2793cc48ffa7SToby Isaac   const PetscInt        *ranges;
2794cc48ffa7SToby Isaac 
2795cc48ffa7SToby Isaac   PetscFunctionBegin;
27966718818eSStefano Zampini   MatCheckProduct(C,3);
27976718818eSStefano Zampini   if (!C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty");
27986718818eSStefano Zampini   abt  = (Mat_MatTransMultDense*)C->product->data;
27996718818eSStefano Zampini   ierr = PetscObjectGetComm((PetscObject)C,&comm);CHKERRQ(ierr);
2800ffc4695bSBarry Smith   ierr = MPI_Comm_rank(comm,&rank);CHKERRMPI(ierr);
2801ffc4695bSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr);
2802637a0070SStefano Zampini   ierr = MatDenseGetArrayRead(a->A,&av);CHKERRQ(ierr);
2803637a0070SStefano Zampini   ierr = MatDenseGetArrayRead(b->A,&bv);CHKERRQ(ierr);
28040acaeb71SStefano Zampini   ierr = MatDenseGetArrayWrite(c->A,&cv);CHKERRQ(ierr);
2805637a0070SStefano Zampini   ierr = MatDenseGetLDA(a->A,&i);CHKERRQ(ierr);
2806637a0070SStefano Zampini   ierr = PetscBLASIntCast(i,&alda);CHKERRQ(ierr);
2807637a0070SStefano Zampini   ierr = MatDenseGetLDA(b->A,&i);CHKERRQ(ierr);
2808637a0070SStefano Zampini   ierr = PetscBLASIntCast(i,&blda);CHKERRQ(ierr);
2809637a0070SStefano Zampini   ierr = MatDenseGetLDA(c->A,&i);CHKERRQ(ierr);
2810637a0070SStefano Zampini   ierr = PetscBLASIntCast(i,&clda);CHKERRQ(ierr);
2811cc48ffa7SToby Isaac   ierr = MatGetOwnershipRanges(B,&ranges);CHKERRQ(ierr);
2812cc48ffa7SToby Isaac   bn   = B->rmap->n;
2813637a0070SStefano Zampini   if (blda == bn) {
2814637a0070SStefano Zampini     sendbuf = (PetscScalar*)bv;
2815cc48ffa7SToby Isaac   } else {
2816cc48ffa7SToby Isaac     sendbuf = abt->buf[0];
2817cc48ffa7SToby Isaac     for (k = 0, i = 0; i < cK; i++) {
2818cc48ffa7SToby Isaac       for (j = 0; j < bn; j++, k++) {
2819637a0070SStefano Zampini         sendbuf[k] = bv[i * blda + j];
2820cc48ffa7SToby Isaac       }
2821cc48ffa7SToby Isaac     }
2822cc48ffa7SToby Isaac   }
2823cc48ffa7SToby Isaac   if (size > 1) {
2824cc48ffa7SToby Isaac     sendto = (rank + size - 1) % size;
2825cc48ffa7SToby Isaac     recvfrom = (rank + size + 1) % size;
2826cc48ffa7SToby Isaac   } else {
2827cc48ffa7SToby Isaac     sendto = recvfrom = 0;
2828cc48ffa7SToby Isaac   }
2829cc48ffa7SToby Isaac   ierr = PetscBLASIntCast(cK,&ck);CHKERRQ(ierr);
2830cc48ffa7SToby Isaac   ierr = PetscBLASIntCast(c->A->rmap->n,&cm);CHKERRQ(ierr);
2831cc48ffa7SToby Isaac   recvisfrom = rank;
2832cc48ffa7SToby Isaac   for (i = 0; i < size; i++) {
2833cc48ffa7SToby Isaac     /* we have finished receiving in sending, bufs can be read/modified */
2834cc48ffa7SToby Isaac     PetscInt nextrecvisfrom = (recvisfrom + 1) % size; /* which process the next recvbuf will originate on */
2835cc48ffa7SToby Isaac     PetscInt nextbn = ranges[nextrecvisfrom + 1] - ranges[nextrecvisfrom];
2836cc48ffa7SToby Isaac 
2837cc48ffa7SToby Isaac     if (nextrecvisfrom != rank) {
2838cc48ffa7SToby Isaac       /* start the cyclic sends from sendbuf, to recvbuf (which will switch to sendbuf) */
2839cc48ffa7SToby Isaac       sendsiz = cK * bn;
2840cc48ffa7SToby Isaac       recvsiz = cK * nextbn;
2841cc48ffa7SToby Isaac       recvbuf = (i & 1) ? abt->buf[0] : abt->buf[1];
2842ffc4695bSBarry Smith       ierr = MPI_Isend(sendbuf, sendsiz, MPIU_SCALAR, sendto, abt->tag, comm, &reqs[0]);CHKERRMPI(ierr);
2843ffc4695bSBarry Smith       ierr = MPI_Irecv(recvbuf, recvsiz, MPIU_SCALAR, recvfrom, abt->tag, comm, &reqs[1]);CHKERRMPI(ierr);
2844cc48ffa7SToby Isaac     }
2845cc48ffa7SToby Isaac 
2846cc48ffa7SToby Isaac     /* local aseq * sendbuf^T */
2847cc48ffa7SToby Isaac     ierr = PetscBLASIntCast(ranges[recvisfrom + 1] - ranges[recvisfrom], &cn);CHKERRQ(ierr);
284850ce3c9cSStefano Zampini     if (cm && cn && ck) PetscStackCallBLAS("BLASgemm",BLASgemm_("N","T",&cm,&cn,&ck,&_DOne,av,&alda,sendbuf,&cn,&_DZero,cv + clda * ranges[recvisfrom],&clda));
2849cc48ffa7SToby Isaac 
2850cc48ffa7SToby Isaac     if (nextrecvisfrom != rank) {
2851cc48ffa7SToby Isaac       /* wait for the sends and receives to complete, swap sendbuf and recvbuf */
2852ffc4695bSBarry Smith       ierr = MPI_Waitall(2, reqs, MPI_STATUSES_IGNORE);CHKERRMPI(ierr);
2853cc48ffa7SToby Isaac     }
2854cc48ffa7SToby Isaac     bn = nextbn;
2855cc48ffa7SToby Isaac     recvisfrom = nextrecvisfrom;
2856cc48ffa7SToby Isaac     sendbuf = recvbuf;
2857cc48ffa7SToby Isaac   }
2858637a0070SStefano Zampini   ierr = MatDenseRestoreArrayRead(a->A,&av);CHKERRQ(ierr);
2859637a0070SStefano Zampini   ierr = MatDenseRestoreArrayRead(b->A,&bv);CHKERRQ(ierr);
28600acaeb71SStefano Zampini   ierr = MatDenseRestoreArrayWrite(c->A,&cv);CHKERRQ(ierr);
28610acaeb71SStefano Zampini   ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
28620acaeb71SStefano Zampini   ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2863cc48ffa7SToby Isaac   PetscFunctionReturn(0);
2864cc48ffa7SToby Isaac }
2865cc48ffa7SToby Isaac 
2866faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(Mat A, Mat B, Mat C)
2867faa55883SToby Isaac {
2868faa55883SToby Isaac   Mat_MPIDense          *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data;
28696718818eSStefano Zampini   Mat_MatTransMultDense *abt;
2870faa55883SToby Isaac   PetscErrorCode        ierr;
2871faa55883SToby Isaac   MPI_Comm              comm;
2872637a0070SStefano Zampini   PetscMPIInt           size;
2873637a0070SStefano Zampini   PetscScalar           *cv, *sendbuf, *recvbuf;
2874637a0070SStefano Zampini   const PetscScalar     *av,*bv;
2875637a0070SStefano Zampini   PetscInt              blda,i,cK=A->cmap->N,k,j,bn;
2876faa55883SToby Isaac   PetscScalar           _DOne=1.0,_DZero=0.0;
2877637a0070SStefano Zampini   PetscBLASInt          cm, cn, ck, alda, clda;
2878faa55883SToby Isaac 
2879faa55883SToby Isaac   PetscFunctionBegin;
28806718818eSStefano Zampini   MatCheckProduct(C,3);
28816718818eSStefano Zampini   if (!C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty");
28826718818eSStefano Zampini   abt  = (Mat_MatTransMultDense*)C->product->data;
2883faa55883SToby Isaac   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
2884ffc4695bSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr);
2885637a0070SStefano Zampini   ierr = MatDenseGetArrayRead(a->A,&av);CHKERRQ(ierr);
2886637a0070SStefano Zampini   ierr = MatDenseGetArrayRead(b->A,&bv);CHKERRQ(ierr);
28870acaeb71SStefano Zampini   ierr = MatDenseGetArrayWrite(c->A,&cv);CHKERRQ(ierr);
2888637a0070SStefano Zampini   ierr = MatDenseGetLDA(a->A,&i);CHKERRQ(ierr);
2889637a0070SStefano Zampini   ierr = PetscBLASIntCast(i,&alda);CHKERRQ(ierr);
2890637a0070SStefano Zampini   ierr = MatDenseGetLDA(b->A,&blda);CHKERRQ(ierr);
2891637a0070SStefano Zampini   ierr = MatDenseGetLDA(c->A,&i);CHKERRQ(ierr);
2892637a0070SStefano Zampini   ierr = PetscBLASIntCast(i,&clda);CHKERRQ(ierr);
2893faa55883SToby Isaac   /* copy transpose of B into buf[0] */
2894faa55883SToby Isaac   bn      = B->rmap->n;
2895faa55883SToby Isaac   sendbuf = abt->buf[0];
2896faa55883SToby Isaac   recvbuf = abt->buf[1];
2897faa55883SToby Isaac   for (k = 0, j = 0; j < bn; j++) {
2898faa55883SToby Isaac     for (i = 0; i < cK; i++, k++) {
2899637a0070SStefano Zampini       sendbuf[k] = bv[i * blda + j];
2900faa55883SToby Isaac     }
2901faa55883SToby Isaac   }
2902637a0070SStefano Zampini   ierr = MatDenseRestoreArrayRead(b->A,&bv);CHKERRQ(ierr);
2903ffc4695bSBarry Smith   ierr = MPI_Allgatherv(sendbuf, bn * cK, MPIU_SCALAR, recvbuf, abt->recvcounts, abt->recvdispls, MPIU_SCALAR, comm);CHKERRMPI(ierr);
2904faa55883SToby Isaac   ierr = PetscBLASIntCast(cK,&ck);CHKERRQ(ierr);
2905faa55883SToby Isaac   ierr = PetscBLASIntCast(c->A->rmap->n,&cm);CHKERRQ(ierr);
2906faa55883SToby Isaac   ierr = PetscBLASIntCast(c->A->cmap->n,&cn);CHKERRQ(ierr);
290750ce3c9cSStefano Zampini   if (cm && cn && ck) PetscStackCallBLAS("BLASgemm",BLASgemm_("N","N",&cm,&cn,&ck,&_DOne,av,&alda,recvbuf,&ck,&_DZero,cv,&clda));
2908637a0070SStefano Zampini   ierr = MatDenseRestoreArrayRead(a->A,&av);CHKERRQ(ierr);
2909637a0070SStefano Zampini   ierr = MatDenseRestoreArrayRead(b->A,&bv);CHKERRQ(ierr);
29100acaeb71SStefano Zampini   ierr = MatDenseRestoreArrayWrite(c->A,&cv);CHKERRQ(ierr);
29110acaeb71SStefano Zampini   ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
29120acaeb71SStefano Zampini   ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2913faa55883SToby Isaac   PetscFunctionReturn(0);
2914faa55883SToby Isaac }
2915faa55883SToby Isaac 
2916faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat A, Mat B, Mat C)
2917faa55883SToby Isaac {
29186718818eSStefano Zampini   Mat_MatTransMultDense *abt;
2919faa55883SToby Isaac   PetscErrorCode        ierr;
2920faa55883SToby Isaac 
2921faa55883SToby Isaac   PetscFunctionBegin;
29226718818eSStefano Zampini   MatCheckProduct(C,3);
29236718818eSStefano Zampini   if (!C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty");
29246718818eSStefano Zampini   abt = (Mat_MatTransMultDense*)C->product->data;
2925faa55883SToby Isaac   switch (abt->alg) {
2926faa55883SToby Isaac   case 1:
2927faa55883SToby Isaac     ierr = MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(A, B, C);CHKERRQ(ierr);
2928faa55883SToby Isaac     break;
2929faa55883SToby Isaac   default:
2930faa55883SToby Isaac     ierr = MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(A, B, C);CHKERRQ(ierr);
2931faa55883SToby Isaac     break;
2932faa55883SToby Isaac   }
2933faa55883SToby Isaac   PetscFunctionReturn(0);
2934faa55883SToby Isaac }
2935faa55883SToby Isaac 
29366718818eSStefano Zampini PetscErrorCode MatDestroy_MatMatMult_MPIDense_MPIDense(void *data)
2937320f2790SHong Zhang {
2938320f2790SHong Zhang   PetscErrorCode   ierr;
29396718818eSStefano Zampini   Mat_MatMultDense *ab = (Mat_MatMultDense*)data;
2940320f2790SHong Zhang 
2941320f2790SHong Zhang   PetscFunctionBegin;
2942320f2790SHong Zhang   ierr = MatDestroy(&ab->Ce);CHKERRQ(ierr);
2943320f2790SHong Zhang   ierr = MatDestroy(&ab->Ae);CHKERRQ(ierr);
2944320f2790SHong Zhang   ierr = MatDestroy(&ab->Be);CHKERRQ(ierr);
2945320f2790SHong Zhang   ierr = PetscFree(ab);CHKERRQ(ierr);
2946320f2790SHong Zhang   PetscFunctionReturn(0);
2947320f2790SHong Zhang }
2948320f2790SHong Zhang 
29495242a7b1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
2950320f2790SHong Zhang PetscErrorCode MatMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C)
2951320f2790SHong Zhang {
2952320f2790SHong Zhang   PetscErrorCode   ierr;
29536718818eSStefano Zampini   Mat_MatMultDense *ab;
2954320f2790SHong Zhang 
2955320f2790SHong Zhang   PetscFunctionBegin;
29566718818eSStefano Zampini   MatCheckProduct(C,3);
29576718818eSStefano Zampini   if (!C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Missing product data");
29586718818eSStefano Zampini   ab   = (Mat_MatMultDense*)C->product->data;
2959de0a22f0SHong Zhang   ierr = MatConvert_MPIDense_Elemental(A,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Ae);CHKERRQ(ierr);
2960de0a22f0SHong Zhang   ierr = MatConvert_MPIDense_Elemental(B,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Be);CHKERRQ(ierr);
29614222ddf1SHong Zhang   ierr = MatMatMultNumeric_Elemental(ab->Ae,ab->Be,ab->Ce);CHKERRQ(ierr);
2962de0a22f0SHong Zhang   ierr = MatConvert(ab->Ce,MATMPIDENSE,MAT_REUSE_MATRIX,&C);CHKERRQ(ierr);
2963320f2790SHong Zhang   PetscFunctionReturn(0);
2964320f2790SHong Zhang }
2965320f2790SHong Zhang 
29666718818eSStefano Zampini static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat C)
2967320f2790SHong Zhang {
2968320f2790SHong Zhang   PetscErrorCode   ierr;
2969320f2790SHong Zhang   Mat              Ae,Be,Ce;
2970320f2790SHong Zhang   Mat_MatMultDense *ab;
2971320f2790SHong Zhang 
2972320f2790SHong Zhang   PetscFunctionBegin;
29736718818eSStefano Zampini   MatCheckProduct(C,4);
29746718818eSStefano Zampini   if (C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty");
29754222ddf1SHong Zhang   /* check local size of A and B */
2976320f2790SHong Zhang   if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend) {
2977378336b6SHong Zhang     SETERRQ4(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != B (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend);
2978320f2790SHong Zhang   }
2979320f2790SHong Zhang 
29804222ddf1SHong Zhang   /* create elemental matrices Ae and Be */
29814222ddf1SHong Zhang   ierr = MatCreate(PetscObjectComm((PetscObject)A), &Ae);CHKERRQ(ierr);
29824222ddf1SHong Zhang   ierr = MatSetSizes(Ae,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
29834222ddf1SHong Zhang   ierr = MatSetType(Ae,MATELEMENTAL);CHKERRQ(ierr);
29844222ddf1SHong Zhang   ierr = MatSetUp(Ae);CHKERRQ(ierr);
29854222ddf1SHong Zhang   ierr = MatSetOption(Ae,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr);
2986320f2790SHong Zhang 
29874222ddf1SHong Zhang   ierr = MatCreate(PetscObjectComm((PetscObject)B), &Be);CHKERRQ(ierr);
29884222ddf1SHong Zhang   ierr = MatSetSizes(Be,PETSC_DECIDE,PETSC_DECIDE,B->rmap->N,B->cmap->N);CHKERRQ(ierr);
29894222ddf1SHong Zhang   ierr = MatSetType(Be,MATELEMENTAL);CHKERRQ(ierr);
29904222ddf1SHong Zhang   ierr = MatSetUp(Be);CHKERRQ(ierr);
29914222ddf1SHong Zhang   ierr = MatSetOption(Be,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr);
2992320f2790SHong Zhang 
29934222ddf1SHong Zhang   /* compute symbolic Ce = Ae*Be */
29944222ddf1SHong Zhang   ierr = MatCreate(PetscObjectComm((PetscObject)C),&Ce);CHKERRQ(ierr);
29954222ddf1SHong Zhang   ierr = MatMatMultSymbolic_Elemental(Ae,Be,fill,Ce);CHKERRQ(ierr);
29964222ddf1SHong Zhang 
29974222ddf1SHong Zhang   /* setup C */
29984222ddf1SHong Zhang   ierr = MatSetSizes(C,A->rmap->n,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr);
29994222ddf1SHong Zhang   ierr = MatSetType(C,MATDENSE);CHKERRQ(ierr);
30004222ddf1SHong Zhang   ierr = MatSetUp(C);CHKERRQ(ierr);
3001320f2790SHong Zhang 
3002320f2790SHong Zhang   /* create data structure for reuse Cdense */
3003320f2790SHong Zhang   ierr = PetscNew(&ab);CHKERRQ(ierr);
3004320f2790SHong Zhang   ab->Ae = Ae;
3005320f2790SHong Zhang   ab->Be = Be;
3006320f2790SHong Zhang   ab->Ce = Ce;
30076718818eSStefano Zampini 
30086718818eSStefano Zampini   C->product->data    = ab;
30096718818eSStefano Zampini   C->product->destroy = MatDestroy_MatMatMult_MPIDense_MPIDense;
30104222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIDense;
3011320f2790SHong Zhang   PetscFunctionReturn(0);
3012320f2790SHong Zhang }
30134222ddf1SHong Zhang #endif
30144222ddf1SHong Zhang /* ----------------------------------------------- */
30154222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
30164222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_AB(Mat C)
3017320f2790SHong Zhang {
3018320f2790SHong Zhang   PetscFunctionBegin;
30194222ddf1SHong Zhang   C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIDense;
30204222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AB;
3021320f2790SHong Zhang   PetscFunctionReturn(0);
3022320f2790SHong Zhang }
30235242a7b1SHong Zhang #endif
302486aefd0dSHong Zhang 
30254222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_AtB(Mat C)
30264222ddf1SHong Zhang {
30274222ddf1SHong Zhang   Mat_Product *product = C->product;
30284222ddf1SHong Zhang   Mat         A = product->A,B=product->B;
30294222ddf1SHong Zhang 
30304222ddf1SHong Zhang   PetscFunctionBegin;
30314222ddf1SHong Zhang   if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend)
30324222ddf1SHong Zhang     SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, (%D, %D) != (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend);
30336718818eSStefano Zampini   C->ops->transposematmultsymbolic = MatTransposeMatMultSymbolic_MPIDense_MPIDense;
30346718818eSStefano Zampini   C->ops->productsymbolic = MatProductSymbolic_AtB;
30354222ddf1SHong Zhang   PetscFunctionReturn(0);
30364222ddf1SHong Zhang }
30374222ddf1SHong Zhang 
30384222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_ABt(Mat C)
30394222ddf1SHong Zhang {
30404222ddf1SHong Zhang   PetscErrorCode ierr;
30414222ddf1SHong Zhang   Mat_Product    *product = C->product;
30424222ddf1SHong Zhang   const char     *algTypes[2] = {"allgatherv","cyclic"};
30434222ddf1SHong Zhang   PetscInt       alg,nalg = 2;
30444222ddf1SHong Zhang   PetscBool      flg = PETSC_FALSE;
30454222ddf1SHong Zhang 
30464222ddf1SHong Zhang   PetscFunctionBegin;
30474222ddf1SHong Zhang   /* Set default algorithm */
30484222ddf1SHong Zhang   alg = 0; /* default is allgatherv */
30494222ddf1SHong Zhang   ierr = PetscStrcmp(product->alg,"default",&flg);CHKERRQ(ierr);
30504222ddf1SHong Zhang   if (flg) {
30514222ddf1SHong Zhang     ierr = MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]);CHKERRQ(ierr);
30524222ddf1SHong Zhang   }
30534222ddf1SHong Zhang 
30544222ddf1SHong Zhang   /* Get runtime option */
30554222ddf1SHong Zhang   if (product->api_user) {
30564222ddf1SHong Zhang     ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatMatTransposeMult","Mat");CHKERRQ(ierr);
30574222ddf1SHong Zhang     ierr = PetscOptionsEList("-matmattransmult_mpidense_mpidense_via","Algorithmic approach","MatMatTransposeMult",algTypes,nalg,algTypes[alg],&alg,&flg);CHKERRQ(ierr);
30584222ddf1SHong Zhang     ierr = PetscOptionsEnd();CHKERRQ(ierr);
30594222ddf1SHong Zhang   } else {
30604222ddf1SHong Zhang     ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatProduct_ABt","Mat");CHKERRQ(ierr);
30614222ddf1SHong Zhang     ierr = PetscOptionsEList("-matproduct_abt_mpidense_mpidense_via","Algorithmic approach","MatProduct_ABt",algTypes,nalg,algTypes[alg],&alg,&flg);CHKERRQ(ierr);
30624222ddf1SHong Zhang     ierr = PetscOptionsEnd();CHKERRQ(ierr);
30634222ddf1SHong Zhang   }
30644222ddf1SHong Zhang   if (flg) {
30654222ddf1SHong Zhang     ierr = MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]);CHKERRQ(ierr);
30664222ddf1SHong Zhang   }
30674222ddf1SHong Zhang 
30684222ddf1SHong Zhang   C->ops->mattransposemultsymbolic = MatMatTransposeMultSymbolic_MPIDense_MPIDense;
30694222ddf1SHong Zhang   C->ops->productsymbolic          = MatProductSymbolic_ABt;
30704222ddf1SHong Zhang   PetscFunctionReturn(0);
30714222ddf1SHong Zhang }
30724222ddf1SHong Zhang 
30734222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense(Mat C)
30744222ddf1SHong Zhang {
30754222ddf1SHong Zhang   PetscErrorCode ierr;
30764222ddf1SHong Zhang   Mat_Product    *product = C->product;
30774222ddf1SHong Zhang 
30784222ddf1SHong Zhang   PetscFunctionBegin;
30794222ddf1SHong Zhang   switch (product->type) {
30804222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL)
30814222ddf1SHong Zhang   case MATPRODUCT_AB:
30824222ddf1SHong Zhang     ierr = MatProductSetFromOptions_MPIDense_AB(C);CHKERRQ(ierr);
30834222ddf1SHong Zhang     break;
30844222ddf1SHong Zhang #endif
30854222ddf1SHong Zhang   case MATPRODUCT_AtB:
30864222ddf1SHong Zhang     ierr = MatProductSetFromOptions_MPIDense_AtB(C);CHKERRQ(ierr);
30874222ddf1SHong Zhang     break;
30884222ddf1SHong Zhang   case MATPRODUCT_ABt:
30894222ddf1SHong Zhang     ierr = MatProductSetFromOptions_MPIDense_ABt(C);CHKERRQ(ierr);
30904222ddf1SHong Zhang     break;
30916718818eSStefano Zampini   default:
30926718818eSStefano Zampini     break;
30934222ddf1SHong Zhang   }
30944222ddf1SHong Zhang   PetscFunctionReturn(0);
30954222ddf1SHong Zhang }
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