1ed3cc1f0SBarry Smith /* 2ed3cc1f0SBarry Smith Basic functions for basic parallel dense matrices. 347d993e7Ssuyashtn Portions of this code are under: 447d993e7Ssuyashtn Copyright (c) 2022 Advanced Micro Devices, Inc. All rights reserved. 5ed3cc1f0SBarry Smith */ 6ed3cc1f0SBarry Smith 7c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h> /*I "petscmat.h" I*/ 88949adfdSHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 9baa3c1c6SHong Zhang #include <petscblaslapack.h> 104186a4bbSPierre Jolivet #include <petsc/private/vecimpl.h> 118965ea79SLois Curfman McInnes 12ab92ecdeSBarry Smith /*@ 1311a5261eSBarry Smith MatDenseGetLocalMatrix - For a `MATMPIDENSE` or `MATSEQDENSE` matrix returns the sequential 14ab92ecdeSBarry Smith matrix that represents the operator. For sequential matrices it returns itself. 15ab92ecdeSBarry Smith 16ab92ecdeSBarry Smith Input Parameter: 172ef1f0ffSBarry Smith . A - the sequential or MPI `MATDENSE` matrix 18ab92ecdeSBarry Smith 19ab92ecdeSBarry Smith Output Parameter: 20ab92ecdeSBarry Smith . B - the inner matrix 21ab92ecdeSBarry Smith 228e6c10adSSatish Balay Level: intermediate 238e6c10adSSatish Balay 241cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MATMPIDENSE`, `MATSEQDENSE` 25ab92ecdeSBarry Smith @*/ 26d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetLocalMatrix(Mat A, Mat *B) 27d71ae5a4SJacob Faibussowitsch { 28ab92ecdeSBarry Smith Mat_MPIDense *mat = (Mat_MPIDense *)A->data; 29ace3abfcSBarry Smith PetscBool flg; 30ab92ecdeSBarry Smith 31ab92ecdeSBarry Smith PetscFunctionBegin; 32d5ea218eSStefano Zampini PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 334f572ea9SToby Isaac PetscAssertPointer(B, 2); 349566063dSJacob Faibussowitsch PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATMPIDENSE, &flg)); 352205254eSKarl Rupp if (flg) *B = mat->A; 36f140bc17SStefano Zampini else { 379566063dSJacob Faibussowitsch PetscCall(PetscObjectBaseTypeCompare((PetscObject)A, MATSEQDENSE, &flg)); 3828b400f6SJacob Faibussowitsch PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Not for matrix type %s", ((PetscObject)A)->type_name); 39f140bc17SStefano Zampini *B = A; 40f140bc17SStefano Zampini } 413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 42ab92ecdeSBarry Smith } 43ab92ecdeSBarry Smith 4466976f2fSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIDense(Mat A, Mat B, MatStructure s) 45d71ae5a4SJacob Faibussowitsch { 46a76f77c3SStefano Zampini Mat_MPIDense *Amat = (Mat_MPIDense *)A->data; 47a76f77c3SStefano Zampini Mat_MPIDense *Bmat = (Mat_MPIDense *)B->data; 48a76f77c3SStefano Zampini 49a76f77c3SStefano Zampini PetscFunctionBegin; 509566063dSJacob Faibussowitsch PetscCall(MatCopy(Amat->A, Bmat->A, s)); 513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 52a76f77c3SStefano Zampini } 53a76f77c3SStefano Zampini 54d71ae5a4SJacob Faibussowitsch PetscErrorCode MatShift_MPIDense(Mat A, PetscScalar alpha) 55d71ae5a4SJacob Faibussowitsch { 562f605a99SJose E. Roman Mat_MPIDense *mat = (Mat_MPIDense *)A->data; 572f605a99SJose E. Roman PetscInt j, lda, rstart = A->rmap->rstart, rend = A->rmap->rend, rend2; 582f605a99SJose E. Roman PetscScalar *v; 592f605a99SJose E. Roman 602f605a99SJose E. Roman PetscFunctionBegin; 612f605a99SJose E. Roman PetscCall(MatDenseGetArray(mat->A, &v)); 622f605a99SJose E. Roman PetscCall(MatDenseGetLDA(mat->A, &lda)); 632f605a99SJose E. Roman rend2 = PetscMin(rend, A->cmap->N); 642f605a99SJose E. Roman if (rend2 > rstart) { 652f605a99SJose E. Roman for (j = rstart; j < rend2; j++) v[j - rstart + j * lda] += alpha; 662f605a99SJose E. Roman PetscCall(PetscLogFlops(rend2 - rstart)); 672f605a99SJose E. Roman } 682f605a99SJose E. Roman PetscCall(MatDenseRestoreArray(mat->A, &v)); 693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 702f605a99SJose E. Roman } 712f605a99SJose E. Roman 7266976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRow_MPIDense(Mat A, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 73d71ae5a4SJacob Faibussowitsch { 74ba8c8a56SBarry Smith Mat_MPIDense *mat = (Mat_MPIDense *)A->data; 75d0f46423SBarry Smith PetscInt lrow, rstart = A->rmap->rstart, rend = A->rmap->rend; 76ba8c8a56SBarry Smith 77ba8c8a56SBarry Smith PetscFunctionBegin; 78aed4548fSBarry Smith PetscCheck(row >= rstart && row < rend, PETSC_COMM_SELF, PETSC_ERR_SUP, "only local rows"); 79ba8c8a56SBarry Smith lrow = row - rstart; 809566063dSJacob Faibussowitsch PetscCall(MatGetRow(mat->A, lrow, nz, (const PetscInt **)idx, (const PetscScalar **)v)); 813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 82ba8c8a56SBarry Smith } 83ba8c8a56SBarry Smith 8466976f2fSJacob Faibussowitsch static PetscErrorCode MatRestoreRow_MPIDense(Mat A, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 85d71ae5a4SJacob Faibussowitsch { 86637a0070SStefano Zampini Mat_MPIDense *mat = (Mat_MPIDense *)A->data; 87637a0070SStefano Zampini PetscInt lrow, rstart = A->rmap->rstart, rend = A->rmap->rend; 88ba8c8a56SBarry Smith 89ba8c8a56SBarry Smith PetscFunctionBegin; 90aed4548fSBarry Smith PetscCheck(row >= rstart && row < rend, PETSC_COMM_SELF, PETSC_ERR_SUP, "only local rows"); 91637a0070SStefano Zampini lrow = row - rstart; 929566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(mat->A, lrow, nz, (const PetscInt **)idx, (const PetscScalar **)v)); 933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 94ba8c8a56SBarry Smith } 95ba8c8a56SBarry Smith 9666976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonalBlock_MPIDense(Mat A, Mat *a) 97d71ae5a4SJacob Faibussowitsch { 980de54da6SSatish Balay Mat_MPIDense *mdn = (Mat_MPIDense *)A->data; 99d0f46423SBarry Smith PetscInt m = A->rmap->n, rstart = A->rmap->rstart; 10087828ca2SBarry Smith PetscScalar *array; 1010de54da6SSatish Balay MPI_Comm comm; 1024b6ae80fSStefano Zampini PetscBool flg; 10311bd1e4dSLisandro Dalcin Mat B; 1040de54da6SSatish Balay 1050de54da6SSatish Balay PetscFunctionBegin; 1069566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &flg)); 10728b400f6SJacob Faibussowitsch PetscCheck(flg, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only square matrices supported."); 1089566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)A, "DiagonalBlock", (PetscObject *)&B)); 109616b8fbbSStefano Zampini if (!B) { /* This should use MatDenseGetSubMatrix (not create), but we would need a call like MatRestoreDiagonalBlock */ 110a51cd166SPierre Jolivet #if PetscDefined(HAVE_CUDA) 1119566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)mdn->A, MATSEQDENSECUDA, &flg)); 11228b400f6SJacob Faibussowitsch PetscCheck(!flg, PETSC_COMM_SELF, PETSC_ERR_SUP, "Not coded for %s. Send an email to petsc-dev@mcs.anl.gov to request this feature", MATSEQDENSECUDA); 113a51cd166SPierre Jolivet #elif PetscDefined(HAVE_HIP) 11447d993e7Ssuyashtn PetscCall(PetscObjectTypeCompare((PetscObject)mdn->A, MATSEQDENSEHIP, &flg)); 11547d993e7Ssuyashtn PetscCheck(!flg, PETSC_COMM_SELF, PETSC_ERR_SUP, "Not coded for %s. Send an email to petsc-dev@mcs.anl.gov to request this feature", MATSEQDENSEHIP); 11647d993e7Ssuyashtn #endif 117f4f49eeaSPierre Jolivet PetscCall(PetscObjectGetComm((PetscObject)mdn->A, &comm)); 1189566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &B)); 1199566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, m, m, m, m)); 1209566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)mdn->A)->type_name)); 1219566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(mdn->A, (const PetscScalar **)&array)); 1229566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(B, array + m * rstart)); 1239566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(mdn->A, (const PetscScalar **)&array)); 1249566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)A, "DiagonalBlock", (PetscObject)B)); 12511bd1e4dSLisandro Dalcin *a = B; 1269566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 1272205254eSKarl Rupp } else *a = B; 1283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1290de54da6SSatish Balay } 1300de54da6SSatish Balay 13166976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValues_MPIDense(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], const PetscScalar v[], InsertMode addv) 132d71ae5a4SJacob Faibussowitsch { 13339b7565bSBarry Smith Mat_MPIDense *A = (Mat_MPIDense *)mat->data; 134d0f46423SBarry Smith PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend, row; 135ace3abfcSBarry Smith PetscBool roworiented = A->roworiented; 1368965ea79SLois Curfman McInnes 1373a40ed3dSBarry Smith PetscFunctionBegin; 1388965ea79SLois Curfman McInnes for (i = 0; i < m; i++) { 1395ef9f2a5SBarry Smith if (idxm[i] < 0) continue; 14008401ef6SPierre Jolivet PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large"); 1418965ea79SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 1428965ea79SLois Curfman McInnes row = idxm[i] - rstart; 14339b7565bSBarry Smith if (roworiented) { 144de0a9f35SPierre Jolivet PetscCall(MatSetValues(A->A, 1, &row, n, idxn, PetscSafePointerPlusOffset(v, i * n), addv)); 1453a40ed3dSBarry Smith } else { 1468965ea79SLois Curfman McInnes for (j = 0; j < n; j++) { 1475ef9f2a5SBarry Smith if (idxn[j] < 0) continue; 14808401ef6SPierre Jolivet PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large"); 149de0a9f35SPierre Jolivet PetscCall(MatSetValues(A->A, 1, &row, 1, &idxn[j], PetscSafePointerPlusOffset(v, i + j * m), addv)); 15039b7565bSBarry Smith } 1518965ea79SLois Curfman McInnes } 1522205254eSKarl Rupp } else if (!A->donotstash) { 1535080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 15439b7565bSBarry Smith if (roworiented) { 155de0a9f35SPierre Jolivet PetscCall(MatStashValuesRow_Private(&mat->stash, idxm[i], n, idxn, PetscSafePointerPlusOffset(v, i * n), PETSC_FALSE)); 156d36fbae8SSatish Balay } else { 157de0a9f35SPierre Jolivet PetscCall(MatStashValuesCol_Private(&mat->stash, idxm[i], n, idxn, PetscSafePointerPlusOffset(v, i), m, PETSC_FALSE)); 15839b7565bSBarry Smith } 159b49de8d1SLois Curfman McInnes } 160b49de8d1SLois Curfman McInnes } 1613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 162b49de8d1SLois Curfman McInnes } 163b49de8d1SLois Curfman McInnes 16466976f2fSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIDense(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 165d71ae5a4SJacob Faibussowitsch { 166b49de8d1SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 167d0f46423SBarry Smith PetscInt i, j, rstart = mat->rmap->rstart, rend = mat->rmap->rend, row; 168b49de8d1SLois Curfman McInnes 1693a40ed3dSBarry Smith PetscFunctionBegin; 170b49de8d1SLois Curfman McInnes for (i = 0; i < m; i++) { 17154c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 17254c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large"); 173b49de8d1SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 174b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 175b49de8d1SLois Curfman McInnes for (j = 0; j < n; j++) { 17654c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 17754c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large"); 1789566063dSJacob Faibussowitsch PetscCall(MatGetValues(mdn->A, 1, &row, 1, &idxn[j], v + i * n + j)); 179b49de8d1SLois Curfman McInnes } 180e7e72b3dSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported"); 1818965ea79SLois Curfman McInnes } 1823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1838965ea79SLois Curfman McInnes } 1848965ea79SLois Curfman McInnes 185d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseGetLDA_MPIDense(Mat A, PetscInt *lda) 186d71ae5a4SJacob Faibussowitsch { 18749a6ff4bSBarry Smith Mat_MPIDense *a = (Mat_MPIDense *)A->data; 18849a6ff4bSBarry Smith 18949a6ff4bSBarry Smith PetscFunctionBegin; 1909566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, lda)); 1913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 19249a6ff4bSBarry Smith } 19349a6ff4bSBarry Smith 194d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseSetLDA_MPIDense(Mat A, PetscInt lda) 195d71ae5a4SJacob Faibussowitsch { 196ad16ce7aSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 19747d993e7Ssuyashtn MatType mtype = MATSEQDENSE; 198ad16ce7aSStefano Zampini 199ad16ce7aSStefano Zampini PetscFunctionBegin; 20017359960SJose E. Roman if (!a->A) { 20128b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 2029566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->rmap)); 2039566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->cmap)); 2049566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &a->A)); 2059566063dSJacob Faibussowitsch PetscCall(MatSetSizes(a->A, A->rmap->n, A->cmap->N, A->rmap->n, A->cmap->N)); 206a51cd166SPierre Jolivet #if PetscDefined(HAVE_CUDA) 20747d993e7Ssuyashtn PetscBool iscuda; 2089566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIDENSECUDA, &iscuda)); 20947d993e7Ssuyashtn if (iscuda) mtype = MATSEQDENSECUDA; 210a51cd166SPierre Jolivet #elif PetscDefined(HAVE_HIP) 21147d993e7Ssuyashtn PetscBool iship; 21247d993e7Ssuyashtn PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIDENSEHIP, &iship)); 21347d993e7Ssuyashtn if (iship) mtype = MATSEQDENSEHIP; 21447d993e7Ssuyashtn #endif 21547d993e7Ssuyashtn PetscCall(MatSetType(a->A, mtype)); 21617359960SJose E. Roman } 2179566063dSJacob Faibussowitsch PetscCall(MatDenseSetLDA(a->A, lda)); 2183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 219ad16ce7aSStefano Zampini } 220ad16ce7aSStefano Zampini 221d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseGetArray_MPIDense(Mat A, PetscScalar **array) 222d71ae5a4SJacob Faibussowitsch { 223ff14e315SSatish Balay Mat_MPIDense *a = (Mat_MPIDense *)A->data; 224ff14e315SSatish Balay 2253a40ed3dSBarry Smith PetscFunctionBegin; 22628b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 2279566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(a->A, array)); 2283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 229ff14e315SSatish Balay } 230ff14e315SSatish Balay 231f1e99121SPierre Jolivet static PetscErrorCode MatDenseGetArrayRead_MPIDense(Mat A, PetscScalar **array) 232d71ae5a4SJacob Faibussowitsch { 2338572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense *)A->data; 2348572280aSBarry Smith 2358572280aSBarry Smith PetscFunctionBegin; 23628b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 237f1e99121SPierre Jolivet PetscCall(MatDenseGetArrayRead(a->A, (const PetscScalar **)array)); 2383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2398572280aSBarry Smith } 2408572280aSBarry Smith 241d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseGetArrayWrite_MPIDense(Mat A, PetscScalar **array) 242d71ae5a4SJacob Faibussowitsch { 2436947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 2446947451fSStefano Zampini 2456947451fSStefano Zampini PetscFunctionBegin; 24628b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 2479566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(a->A, array)); 2483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2496947451fSStefano Zampini } 2506947451fSStefano Zampini 251d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDensePlaceArray_MPIDense(Mat A, const PetscScalar *array) 252d71ae5a4SJacob Faibussowitsch { 253d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense *)A->data; 254d3042a70SBarry Smith 255d3042a70SBarry Smith PetscFunctionBegin; 25628b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 25728b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 2589566063dSJacob Faibussowitsch PetscCall(MatDensePlaceArray(a->A, array)); 2593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 260d3042a70SBarry Smith } 261d3042a70SBarry Smith 262d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseResetArray_MPIDense(Mat A) 263d71ae5a4SJacob Faibussowitsch { 264d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense *)A->data; 265d3042a70SBarry Smith 266d3042a70SBarry Smith PetscFunctionBegin; 26728b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 26828b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 2699566063dSJacob Faibussowitsch PetscCall(MatDenseResetArray(a->A)); 2703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 271d3042a70SBarry Smith } 272d3042a70SBarry Smith 273d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseReplaceArray_MPIDense(Mat A, const PetscScalar *array) 274d71ae5a4SJacob Faibussowitsch { 275d5ea218eSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 276d5ea218eSStefano Zampini 277d5ea218eSStefano Zampini PetscFunctionBegin; 27828b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 27928b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 2809566063dSJacob Faibussowitsch PetscCall(MatDenseReplaceArray(a->A, array)); 2813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 282d5ea218eSStefano Zampini } 283d5ea218eSStefano Zampini 284d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrix_MPIDense(Mat A, IS isrow, IS iscol, MatReuse scall, Mat *B) 285d71ae5a4SJacob Faibussowitsch { 286ca3fa75bSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense *)A->data, *newmatd; 287637a0070SStefano Zampini PetscInt lda, i, j, rstart, rend, nrows, ncols, Ncols, nlrows, nlcols; 2885d0c19d7SBarry Smith const PetscInt *irow, *icol; 289637a0070SStefano Zampini const PetscScalar *v; 290637a0070SStefano Zampini PetscScalar *bv; 291ca3fa75bSLois Curfman McInnes Mat newmat; 2924aa3045dSJed Brown IS iscol_local; 29342a884f0SBarry Smith MPI_Comm comm_is, comm_mat; 294ca3fa75bSLois Curfman McInnes 295ca3fa75bSLois Curfman McInnes PetscFunctionBegin; 2969566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm_mat)); 2979566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)iscol, &comm_is)); 29808401ef6SPierre Jolivet PetscCheck(comm_mat == comm_is, PETSC_COMM_SELF, PETSC_ERR_ARG_NOTSAMECOMM, "IS communicator must match matrix communicator"); 29942a884f0SBarry Smith 3009566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol, &iscol_local)); 3019566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isrow, &irow)); 3029566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_local, &icol)); 3039566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow, &nrows)); 3049566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &ncols)); 3059566063dSJacob Faibussowitsch PetscCall(ISGetSize(iscol, &Ncols)); /* global number of columns, size of iscol_local */ 306ca3fa75bSLois Curfman McInnes 307ca3fa75bSLois Curfman McInnes /* No parallel redistribution currently supported! Should really check each index set 308da81f932SPierre Jolivet to confirm that it is OK. ... Currently supports only submatrix same partitioning as 3097eba5e9cSLois Curfman McInnes original matrix! */ 310ca3fa75bSLois Curfman McInnes 3119566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, &nlrows, &nlcols)); 3129566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, &rend)); 313ca3fa75bSLois Curfman McInnes 314ca3fa75bSLois Curfman McInnes /* Check submatrix call */ 315ca3fa75bSLois Curfman McInnes if (scall == MAT_REUSE_MATRIX) { 316e32f2f54SBarry Smith /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */ 3177eba5e9cSLois Curfman McInnes /* Really need to test rows and column sizes! */ 318ca3fa75bSLois Curfman McInnes newmat = *B; 319ca3fa75bSLois Curfman McInnes } else { 320ca3fa75bSLois Curfman McInnes /* Create and fill new matrix */ 3219566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &newmat)); 3229566063dSJacob Faibussowitsch PetscCall(MatSetSizes(newmat, nrows, ncols, PETSC_DECIDE, Ncols)); 3239566063dSJacob Faibussowitsch PetscCall(MatSetType(newmat, ((PetscObject)A)->type_name)); 3249566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(newmat, NULL)); 325ca3fa75bSLois Curfman McInnes } 326ca3fa75bSLois Curfman McInnes 327ca3fa75bSLois Curfman McInnes /* Now extract the data pointers and do the copy, column at a time */ 328ca3fa75bSLois Curfman McInnes newmatd = (Mat_MPIDense *)newmat->data; 3299566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(newmatd->A, &bv)); 3309566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(mat->A, &v)); 3319566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(mat->A, &lda)); 3324aa3045dSJed Brown for (i = 0; i < Ncols; i++) { 333637a0070SStefano Zampini const PetscScalar *av = v + lda * icol[i]; 334ad540459SPierre Jolivet for (j = 0; j < nrows; j++) *bv++ = av[irow[j] - rstart]; 335ca3fa75bSLois Curfman McInnes } 3369566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(mat->A, &v)); 3379566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(newmatd->A, &bv)); 338ca3fa75bSLois Curfman McInnes 339ca3fa75bSLois Curfman McInnes /* Assemble the matrices so that the correct flags are set */ 3409566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(newmat, MAT_FINAL_ASSEMBLY)); 3419566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(newmat, MAT_FINAL_ASSEMBLY)); 342ca3fa75bSLois Curfman McInnes 343ca3fa75bSLois Curfman McInnes /* Free work space */ 3449566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isrow, &irow)); 3459566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_local, &icol)); 3469566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 347ca3fa75bSLois Curfman McInnes *B = newmat; 3483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 349ca3fa75bSLois Curfman McInnes } 350ca3fa75bSLois Curfman McInnes 35166976f2fSJacob Faibussowitsch static PetscErrorCode MatDenseRestoreArray_MPIDense(Mat A, PetscScalar **array) 352d71ae5a4SJacob Faibussowitsch { 35373a71a0fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense *)A->data; 35473a71a0fSBarry Smith 3553a40ed3dSBarry Smith PetscFunctionBegin; 3569566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(a->A, array)); 3573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 358ff14e315SSatish Balay } 359ff14e315SSatish Balay 360f1e99121SPierre Jolivet static PetscErrorCode MatDenseRestoreArrayRead_MPIDense(Mat A, PetscScalar **array) 361d71ae5a4SJacob Faibussowitsch { 3628572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense *)A->data; 3638572280aSBarry Smith 3648572280aSBarry Smith PetscFunctionBegin; 365f1e99121SPierre Jolivet PetscCall(MatDenseRestoreArrayRead(a->A, (const PetscScalar **)array)); 3663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3678572280aSBarry Smith } 3688572280aSBarry Smith 36966976f2fSJacob Faibussowitsch static PetscErrorCode MatDenseRestoreArrayWrite_MPIDense(Mat A, PetscScalar **array) 370d71ae5a4SJacob Faibussowitsch { 3716947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 3726947451fSStefano Zampini 3736947451fSStefano Zampini PetscFunctionBegin; 3749566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(a->A, array)); 3753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3766947451fSStefano Zampini } 3776947451fSStefano Zampini 37866976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat, MatAssemblyType mode) 379d71ae5a4SJacob Faibussowitsch { 38039ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 38113f74950SBarry Smith PetscInt nstash, reallocs; 3828965ea79SLois Curfman McInnes 3833a40ed3dSBarry Smith PetscFunctionBegin; 3843ba16761SJacob Faibussowitsch if (mdn->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS); 3858965ea79SLois Curfman McInnes 3869566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 3879566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 3889566063dSJacob Faibussowitsch PetscCall(PetscInfo(mdn->A, "Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 3893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3908965ea79SLois Curfman McInnes } 3918965ea79SLois Curfman McInnes 39266976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat, MatAssemblyType mode) 393d71ae5a4SJacob Faibussowitsch { 39439ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 39513f74950SBarry Smith PetscInt i, *row, *col, flg, j, rstart, ncols; 39613f74950SBarry Smith PetscMPIInt n; 39787828ca2SBarry Smith PetscScalar *val; 3988965ea79SLois Curfman McInnes 3993a40ed3dSBarry Smith PetscFunctionBegin; 400910cf402Sprj- if (!mdn->donotstash && !mat->nooffprocentries) { 4018965ea79SLois Curfman McInnes /* wait on receives */ 4027ef1d9bdSSatish Balay while (1) { 4039566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 4047ef1d9bdSSatish Balay if (!flg) break; 4058965ea79SLois Curfman McInnes 4067ef1d9bdSSatish Balay for (i = 0; i < n;) { 4077ef1d9bdSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 4082205254eSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 4092205254eSKarl Rupp if (row[j] != rstart) break; 4102205254eSKarl Rupp } 4117ef1d9bdSSatish Balay if (j < n) ncols = j - i; 4127ef1d9bdSSatish Balay else ncols = n - i; 4137ef1d9bdSSatish Balay /* Now assemble all these values with a single function call */ 4149566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIDense(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode)); 4157ef1d9bdSSatish Balay i = j; 4168965ea79SLois Curfman McInnes } 4177ef1d9bdSSatish Balay } 4189566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 419910cf402Sprj- } 4208965ea79SLois Curfman McInnes 4219566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mdn->A, mode)); 4229566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mdn->A, mode)); 4233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4248965ea79SLois Curfman McInnes } 4258965ea79SLois Curfman McInnes 42666976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIDense(Mat A) 427d71ae5a4SJacob Faibussowitsch { 42839ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense *)A->data; 4293a40ed3dSBarry Smith 4303a40ed3dSBarry Smith PetscFunctionBegin; 4319566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 4323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4338965ea79SLois Curfman McInnes } 4348965ea79SLois Curfman McInnes 43566976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIDense(Mat A, PetscInt n, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 436d71ae5a4SJacob Faibussowitsch { 43739ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense *)A->data; 438637a0070SStefano Zampini PetscInt i, len, *lrows; 439637a0070SStefano Zampini 440637a0070SStefano Zampini PetscFunctionBegin; 441637a0070SStefano Zampini /* get locally owned rows */ 4429566063dSJacob Faibussowitsch PetscCall(PetscLayoutMapLocal(A->rmap, n, rows, &len, &lrows, NULL)); 443dd8e379bSPierre Jolivet /* fix right-hand side if needed */ 444637a0070SStefano Zampini if (x && b) { 44597b48c8fSBarry Smith const PetscScalar *xx; 44697b48c8fSBarry Smith PetscScalar *bb; 4478965ea79SLois Curfman McInnes 4489566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 4499566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(b, &bb)); 450637a0070SStefano Zampini for (i = 0; i < len; ++i) bb[lrows[i]] = diag * xx[lrows[i]]; 4519566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 4529566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(b, &bb)); 45397b48c8fSBarry Smith } 4549566063dSJacob Faibussowitsch PetscCall(MatZeroRows(l->A, len, lrows, 0.0, NULL, NULL)); 455e2eb51b1SBarry Smith if (diag != 0.0) { 456637a0070SStefano Zampini Vec d; 457b9679d65SBarry Smith 4589566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(A, NULL, &d)); 4599566063dSJacob Faibussowitsch PetscCall(VecSet(d, diag)); 4609566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet(A, d, INSERT_VALUES)); 4619566063dSJacob Faibussowitsch PetscCall(VecDestroy(&d)); 462b9679d65SBarry Smith } 4639566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 4643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4658965ea79SLois Curfman McInnes } 4668965ea79SLois Curfman McInnes 4670be0d8bdSHansol Suh PETSC_INTERN PetscErrorCode MatMult_SeqDense(Mat, Vec, Vec); 4680be0d8bdSHansol Suh PETSC_INTERN PetscErrorCode MatMultAdd_SeqDense(Mat, Vec, Vec, Vec); 4690be0d8bdSHansol Suh PETSC_INTERN PetscErrorCode MatMultTranspose_SeqDense(Mat, Vec, Vec); 4700be0d8bdSHansol Suh PETSC_INTERN PetscErrorCode MatMultTransposeAdd_SeqDense(Mat, Vec, Vec, Vec); 4710be0d8bdSHansol Suh 47266976f2fSJacob Faibussowitsch static PetscErrorCode MatMult_MPIDense(Mat mat, Vec xx, Vec yy) 473d71ae5a4SJacob Faibussowitsch { 47439ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 475637a0070SStefano Zampini const PetscScalar *ax; 476637a0070SStefano Zampini PetscScalar *ay; 477d0295fc0SJunchao Zhang PetscMemType axmtype, aymtype; 478c456f294SBarry Smith 4793a40ed3dSBarry Smith PetscFunctionBegin; 4806f08ad05SPierre Jolivet if (!mdn->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(mat)); 4819566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(xx, &ax, &axmtype)); 4829566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(mdn->lvec, &ay, &aymtype)); 4839566063dSJacob Faibussowitsch PetscCall(PetscSFBcastWithMemTypeBegin(mdn->Mvctx, MPIU_SCALAR, axmtype, ax, aymtype, ay, MPI_REPLACE)); 4849566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(mdn->Mvctx, MPIU_SCALAR, ax, ay, MPI_REPLACE)); 4859566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(mdn->lvec, &ay)); 4869566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(xx, &ax)); 4879566063dSJacob Faibussowitsch PetscCall((*mdn->A->ops->mult)(mdn->A, mdn->lvec, yy)); 4883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4898965ea79SLois Curfman McInnes } 4908965ea79SLois Curfman McInnes 4910be0d8bdSHansol Suh static PetscErrorCode MatMultAddColumnRange_MPIDense(Mat mat, Vec xx, Vec yy, Vec zz, PetscInt c_start, PetscInt c_end) 4920be0d8bdSHansol Suh { 4930be0d8bdSHansol Suh Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 4940be0d8bdSHansol Suh const PetscScalar *ax; 4950be0d8bdSHansol Suh PetscScalar *ay; 4960be0d8bdSHansol Suh PetscMemType axmtype, aymtype; 4970be0d8bdSHansol Suh 4980be0d8bdSHansol Suh PetscFunctionBegin; 4990be0d8bdSHansol Suh if (!mdn->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(mat)); 5000be0d8bdSHansol Suh PetscCall(VecGetArrayReadAndMemType(xx, &ax, &axmtype)); 5010be0d8bdSHansol Suh PetscCall(VecGetArrayAndMemType(mdn->lvec, &ay, &aymtype)); 5020be0d8bdSHansol Suh PetscCall(PetscSFBcastWithMemTypeBegin(mdn->Mvctx, MPIU_SCALAR, axmtype, ax, aymtype, ay, MPI_REPLACE)); 5030be0d8bdSHansol Suh PetscCall(PetscSFBcastEnd(mdn->Mvctx, MPIU_SCALAR, ax, ay, MPI_REPLACE)); 5040be0d8bdSHansol Suh PetscCall(VecRestoreArrayAndMemType(mdn->lvec, &ay)); 5050be0d8bdSHansol Suh PetscCall(VecRestoreArrayReadAndMemType(xx, &ax)); 5060be0d8bdSHansol Suh PetscUseMethod(mdn->A, "MatMultAddColumnRange_C", (Mat, Vec, Vec, Vec, PetscInt, PetscInt), (mdn->A, mdn->lvec, yy, zz, c_start, c_end)); 5070be0d8bdSHansol Suh PetscFunctionReturn(PETSC_SUCCESS); 5080be0d8bdSHansol Suh } 5090be0d8bdSHansol Suh 51066976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIDense(Mat mat, Vec xx, Vec yy, Vec zz) 511d71ae5a4SJacob Faibussowitsch { 51239ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 513637a0070SStefano Zampini const PetscScalar *ax; 514637a0070SStefano Zampini PetscScalar *ay; 515d0295fc0SJunchao Zhang PetscMemType axmtype, aymtype; 516c456f294SBarry Smith 5173a40ed3dSBarry Smith PetscFunctionBegin; 5186f08ad05SPierre Jolivet if (!mdn->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(mat)); 5199566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(xx, &ax, &axmtype)); 5209566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(mdn->lvec, &ay, &aymtype)); 5219566063dSJacob Faibussowitsch PetscCall(PetscSFBcastWithMemTypeBegin(mdn->Mvctx, MPIU_SCALAR, axmtype, ax, aymtype, ay, MPI_REPLACE)); 5229566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(mdn->Mvctx, MPIU_SCALAR, ax, ay, MPI_REPLACE)); 5239566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(mdn->lvec, &ay)); 5249566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(xx, &ax)); 5259566063dSJacob Faibussowitsch PetscCall((*mdn->A->ops->multadd)(mdn->A, mdn->lvec, yy, zz)); 5263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5278965ea79SLois Curfman McInnes } 5288965ea79SLois Curfman McInnes 5290be0d8bdSHansol Suh static PetscErrorCode MatMultHermitianTransposeColumnRange_MPIDense(Mat A, Vec xx, Vec yy, PetscInt c_start, PetscInt c_end) 5300be0d8bdSHansol Suh { 5310be0d8bdSHansol Suh Mat_MPIDense *a = (Mat_MPIDense *)A->data; 5320be0d8bdSHansol Suh const PetscScalar *ax; 5330be0d8bdSHansol Suh PetscScalar *ay; 5340be0d8bdSHansol Suh PetscMemType axmtype, aymtype; 5350be0d8bdSHansol Suh 5360be0d8bdSHansol Suh PetscFunctionBegin; 5370be0d8bdSHansol Suh if (!a->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); 5380be0d8bdSHansol Suh PetscCall(VecSet(yy, 0.0)); 5390be0d8bdSHansol Suh PetscUseMethod(a->A, "MatMultHermitianTransposeColumnRange_C", (Mat, Vec, Vec, PetscInt, PetscInt), (a->A, xx, a->lvec, c_start, c_end)); 5400be0d8bdSHansol Suh PetscCall(VecGetArrayReadAndMemType(a->lvec, &ax, &axmtype)); 5410be0d8bdSHansol Suh PetscCall(VecGetArrayAndMemType(yy, &ay, &aymtype)); 5420be0d8bdSHansol Suh PetscCall(PetscSFReduceWithMemTypeBegin(a->Mvctx, MPIU_SCALAR, axmtype, ax, aymtype, ay, MPIU_SUM)); 5430be0d8bdSHansol Suh PetscCall(PetscSFReduceEnd(a->Mvctx, MPIU_SCALAR, ax, ay, MPIU_SUM)); 5440be0d8bdSHansol Suh PetscCall(VecRestoreArrayReadAndMemType(a->lvec, &ax)); 5450be0d8bdSHansol Suh PetscCall(VecRestoreArrayAndMemType(yy, &ay)); 5460be0d8bdSHansol Suh PetscFunctionReturn(PETSC_SUCCESS); 5470be0d8bdSHansol Suh } 5480be0d8bdSHansol Suh 549459e8d23SBlanca Mellado Pinto static PetscErrorCode MatMultTransposeKernel_MPIDense(Mat A, Vec xx, Vec yy, PetscBool herm) 550d71ae5a4SJacob Faibussowitsch { 551096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense *)A->data; 552637a0070SStefano Zampini const PetscScalar *ax; 553637a0070SStefano Zampini PetscScalar *ay; 554d0295fc0SJunchao Zhang PetscMemType axmtype, aymtype; 5554d86920dSPierre Jolivet 5563a40ed3dSBarry Smith PetscFunctionBegin; 5576f08ad05SPierre Jolivet if (!a->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); 5589566063dSJacob Faibussowitsch PetscCall(VecSet(yy, 0.0)); 559459e8d23SBlanca Mellado Pinto if (herm) PetscCall((*a->A->ops->multhermitiantranspose)(a->A, xx, a->lvec)); 560459e8d23SBlanca Mellado Pinto else PetscCall((*a->A->ops->multtranspose)(a->A, xx, a->lvec)); 5619566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(a->lvec, &ax, &axmtype)); 5629566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(yy, &ay, &aymtype)); 5639566063dSJacob Faibussowitsch PetscCall(PetscSFReduceWithMemTypeBegin(a->Mvctx, MPIU_SCALAR, axmtype, ax, aymtype, ay, MPIU_SUM)); 5649566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(a->Mvctx, MPIU_SCALAR, ax, ay, MPIU_SUM)); 5659566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(a->lvec, &ax)); 5669566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(yy, &ay)); 5673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 568096963f5SLois Curfman McInnes } 569096963f5SLois Curfman McInnes 5700be0d8bdSHansol Suh static PetscErrorCode MatMultHermitianTransposeAddColumnRange_MPIDense(Mat A, Vec xx, Vec yy, Vec zz, PetscInt c_start, PetscInt c_end) 5710be0d8bdSHansol Suh { 5720be0d8bdSHansol Suh Mat_MPIDense *a = (Mat_MPIDense *)A->data; 5730be0d8bdSHansol Suh const PetscScalar *ax; 5740be0d8bdSHansol Suh PetscScalar *ay; 5750be0d8bdSHansol Suh PetscMemType axmtype, aymtype; 5760be0d8bdSHansol Suh 5770be0d8bdSHansol Suh PetscFunctionBegin; 5780be0d8bdSHansol Suh if (!a->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); 5790be0d8bdSHansol Suh PetscCall(VecCopy(yy, zz)); 5800be0d8bdSHansol Suh PetscMPIInt rank; 5810be0d8bdSHansol Suh PetscCallMPI(MPI_Comm_rank(MPI_COMM_WORLD, &rank)); 5820be0d8bdSHansol Suh PetscUseMethod(a->A, "MatMultHermitianTransposeColumnRange_C", (Mat, Vec, Vec, PetscInt, PetscInt), (a->A, xx, a->lvec, c_start, c_end)); 5830be0d8bdSHansol Suh PetscCall(VecGetArrayReadAndMemType(a->lvec, &ax, &axmtype)); 5840be0d8bdSHansol Suh PetscCall(VecGetArrayAndMemType(zz, &ay, &aymtype)); 5850be0d8bdSHansol Suh PetscCall(PetscSFReduceWithMemTypeBegin(a->Mvctx, MPIU_SCALAR, axmtype, ax, aymtype, ay, MPIU_SUM)); 5860be0d8bdSHansol Suh PetscCall(PetscSFReduceEnd(a->Mvctx, MPIU_SCALAR, ax, ay, MPIU_SUM)); 5870be0d8bdSHansol Suh PetscCall(VecRestoreArrayReadAndMemType(a->lvec, &ax)); 5880be0d8bdSHansol Suh PetscCall(VecRestoreArrayAndMemType(zz, &ay)); 5890be0d8bdSHansol Suh PetscFunctionReturn(PETSC_SUCCESS); 5900be0d8bdSHansol Suh } 5910be0d8bdSHansol Suh 592459e8d23SBlanca Mellado Pinto static PetscErrorCode MatMultTransposeAddKernel_MPIDense(Mat A, Vec xx, Vec yy, Vec zz, PetscBool herm) 593d71ae5a4SJacob Faibussowitsch { 594096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense *)A->data; 595637a0070SStefano Zampini const PetscScalar *ax; 596637a0070SStefano Zampini PetscScalar *ay; 597d0295fc0SJunchao Zhang PetscMemType axmtype, aymtype; 598096963f5SLois Curfman McInnes 5993a40ed3dSBarry Smith PetscFunctionBegin; 6006f08ad05SPierre Jolivet if (!a->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); 6019566063dSJacob Faibussowitsch PetscCall(VecCopy(yy, zz)); 602459e8d23SBlanca Mellado Pinto if (herm) PetscCall((*a->A->ops->multhermitiantranspose)(a->A, xx, a->lvec)); 603459e8d23SBlanca Mellado Pinto else PetscCall((*a->A->ops->multtranspose)(a->A, xx, a->lvec)); 6049566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(a->lvec, &ax, &axmtype)); 6059566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(zz, &ay, &aymtype)); 6069566063dSJacob Faibussowitsch PetscCall(PetscSFReduceWithMemTypeBegin(a->Mvctx, MPIU_SCALAR, axmtype, ax, aymtype, ay, MPIU_SUM)); 6079566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(a->Mvctx, MPIU_SCALAR, ax, ay, MPIU_SUM)); 6089566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(a->lvec, &ax)); 6099566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(zz, &ay)); 6103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 611096963f5SLois Curfman McInnes } 612096963f5SLois Curfman McInnes 613459e8d23SBlanca Mellado Pinto static PetscErrorCode MatMultTranspose_MPIDense(Mat A, Vec xx, Vec yy) 614459e8d23SBlanca Mellado Pinto { 615459e8d23SBlanca Mellado Pinto PetscFunctionBegin; 616459e8d23SBlanca Mellado Pinto PetscCall(MatMultTransposeKernel_MPIDense(A, xx, yy, PETSC_FALSE)); 617459e8d23SBlanca Mellado Pinto PetscFunctionReturn(PETSC_SUCCESS); 618459e8d23SBlanca Mellado Pinto } 619459e8d23SBlanca Mellado Pinto 620459e8d23SBlanca Mellado Pinto static PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A, Vec xx, Vec yy, Vec zz) 621459e8d23SBlanca Mellado Pinto { 622459e8d23SBlanca Mellado Pinto PetscFunctionBegin; 623459e8d23SBlanca Mellado Pinto PetscCall(MatMultTransposeAddKernel_MPIDense(A, xx, yy, zz, PETSC_FALSE)); 624459e8d23SBlanca Mellado Pinto PetscFunctionReturn(PETSC_SUCCESS); 625459e8d23SBlanca Mellado Pinto } 626459e8d23SBlanca Mellado Pinto 627459e8d23SBlanca Mellado Pinto static PetscErrorCode MatMultHermitianTranspose_MPIDense(Mat A, Vec xx, Vec yy) 628459e8d23SBlanca Mellado Pinto { 629459e8d23SBlanca Mellado Pinto PetscFunctionBegin; 630459e8d23SBlanca Mellado Pinto PetscCall(MatMultTransposeKernel_MPIDense(A, xx, yy, PETSC_TRUE)); 631459e8d23SBlanca Mellado Pinto PetscFunctionReturn(PETSC_SUCCESS); 632459e8d23SBlanca Mellado Pinto } 633459e8d23SBlanca Mellado Pinto 634459e8d23SBlanca Mellado Pinto static PetscErrorCode MatMultHermitianTransposeAdd_MPIDense(Mat A, Vec xx, Vec yy, Vec zz) 635459e8d23SBlanca Mellado Pinto { 636459e8d23SBlanca Mellado Pinto PetscFunctionBegin; 637459e8d23SBlanca Mellado Pinto PetscCall(MatMultTransposeAddKernel_MPIDense(A, xx, yy, zz, PETSC_TRUE)); 638459e8d23SBlanca Mellado Pinto PetscFunctionReturn(PETSC_SUCCESS); 639459e8d23SBlanca Mellado Pinto } 640459e8d23SBlanca Mellado Pinto 641d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetDiagonal_MPIDense(Mat A, Vec v) 642d71ae5a4SJacob Faibussowitsch { 64339ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense *)A->data; 64479560b15SJacob Faibussowitsch PetscInt lda, len, i, nl, ng, m = A->rmap->n, radd; 64579560b15SJacob Faibussowitsch PetscScalar *x; 646637a0070SStefano Zampini const PetscScalar *av; 647ed3cc1f0SBarry Smith 6483a40ed3dSBarry Smith PetscFunctionBegin; 6499566063dSJacob Faibussowitsch PetscCall(VecGetArray(v, &x)); 65079560b15SJacob Faibussowitsch PetscCall(VecGetSize(v, &ng)); 65179560b15SJacob Faibussowitsch PetscCheck(ng == A->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Nonconforming mat and vec"); 65279560b15SJacob Faibussowitsch PetscCall(VecGetLocalSize(v, &nl)); 653d0f46423SBarry Smith len = PetscMin(a->A->rmap->n, a->A->cmap->n); 654d0f46423SBarry Smith radd = A->rmap->rstart * m; 6559566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A, &av)); 6569566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &lda)); 657ad540459SPierre Jolivet for (i = 0; i < len; i++) x[i] = av[radd + i * lda + i]; 6589566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A, &av)); 6590be0d8bdSHansol Suh if (nl - i > 0) PetscCall(PetscArrayzero(x + i, nl - i)); 6609566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v, &x)); 6613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6628965ea79SLois Curfman McInnes } 6638965ea79SLois Curfman McInnes 66466976f2fSJacob Faibussowitsch static PetscErrorCode MatDestroy_MPIDense(Mat mat) 665d71ae5a4SJacob Faibussowitsch { 6663501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 667ed3cc1f0SBarry Smith 6683a40ed3dSBarry Smith PetscFunctionBegin; 6693ba16761SJacob Faibussowitsch PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N)); 6709566063dSJacob Faibussowitsch PetscCall(MatStashDestroy_Private(&mat->stash)); 67128b400f6SJacob Faibussowitsch PetscCheck(!mdn->vecinuse, PetscObjectComm((PetscObject)mat), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 67228b400f6SJacob Faibussowitsch PetscCheck(!mdn->matinuse, PetscObjectComm((PetscObject)mat), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 6739566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mdn->A)); 6749566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mdn->lvec)); 6759566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&mdn->Mvctx)); 6769566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mdn->cvec)); 6779566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mdn->cmat)); 67801b82886SBarry Smith 6799566063dSJacob Faibussowitsch PetscCall(PetscFree(mat->data)); 6809566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 6818baccfbdSHong Zhang 6829566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetLDA_C", NULL)); 6839566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseSetLDA_C", NULL)); 6849566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetArray_C", NULL)); 6859566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreArray_C", NULL)); 6869566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetArrayRead_C", NULL)); 6879566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreArrayRead_C", NULL)); 6889566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetArrayWrite_C", NULL)); 6899566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreArrayWrite_C", NULL)); 6909566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDensePlaceArray_C", NULL)); 6919566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseResetArray_C", NULL)); 6929566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseReplaceArray_C", NULL)); 6939566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpidense_C", NULL)); 6949566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_mpiaij_C", NULL)); 6958baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 6969566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_elemental_C", NULL)); 6978baccfbdSHong Zhang #endif 698d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 6999566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_scalapack_C", NULL)); 700d24d4204SJose E. Roman #endif 7019566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIDenseSetPreallocation_C", NULL)); 7029566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpidense_C", NULL)); 7039566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidense_mpiaij_C", NULL)); 7046718818eSStefano Zampini #if defined(PETSC_HAVE_CUDA) 7059566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaijcusparse_mpidense_C", NULL)); 7069566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidense_mpiaijcusparse_C", NULL)); 7072e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_mpidensecuda_C", NULL)); 7082e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidensecuda_mpidense_C", NULL)); 7092e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpidensecuda_C", NULL)); 7102e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaijcusparse_mpidensecuda_C", NULL)); 7112e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidensecuda_mpiaij_C", NULL)); 7122e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidensecuda_mpiaijcusparse_C", NULL)); 7132e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDAGetArray_C", NULL)); 7142e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDAGetArrayRead_C", NULL)); 7152e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDAGetArrayWrite_C", NULL)); 7162e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDARestoreArray_C", NULL)); 7172e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDARestoreArrayRead_C", NULL)); 7182e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDARestoreArrayWrite_C", NULL)); 7192e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDAPlaceArray_C", NULL)); 7202e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDAResetArray_C", NULL)); 7212e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDAReplaceArray_C", NULL)); 7223d9668e3SJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseCUDASetPreallocation_C", NULL)); 7236718818eSStefano Zampini #endif 72447d993e7Ssuyashtn #if defined(PETSC_HAVE_HIP) 72547d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaijhipsparse_mpidense_C", NULL)); 72647d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidense_mpiaijhipsparse_C", NULL)); 72747d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_mpidensehip_C", NULL)); 72847d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidensehip_mpidense_C", NULL)); 72947d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpidensehip_C", NULL)); 73047d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaijhipsparse_mpidensehip_C", NULL)); 73147d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidensehip_mpiaij_C", NULL)); 73247d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidensehip_mpiaijhipsparse_C", NULL)); 73347d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPGetArray_C", NULL)); 73447d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPGetArrayRead_C", NULL)); 73547d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPGetArrayWrite_C", NULL)); 73647d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPRestoreArray_C", NULL)); 73747d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPRestoreArrayRead_C", NULL)); 73847d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPRestoreArrayWrite_C", NULL)); 73947d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPPlaceArray_C", NULL)); 74047d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPResetArray_C", NULL)); 74147d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPReplaceArray_C", NULL)); 7423d9668e3SJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseHIPSetPreallocation_C", NULL)); 74347d993e7Ssuyashtn #endif 7449566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumn_C", NULL)); 7459566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumn_C", NULL)); 7469566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVec_C", NULL)); 7479566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVec_C", NULL)); 7489566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVecRead_C", NULL)); 7499566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVecRead_C", NULL)); 7509566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVecWrite_C", NULL)); 7519566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVecWrite_C", NULL)); 7529566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetSubMatrix_C", NULL)); 7539566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreSubMatrix_C", NULL)); 7540be0d8bdSHansol Suh PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMultAddColumnRange_C", NULL)); 7550be0d8bdSHansol Suh PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMultHermitianTransposeColumnRange_C", NULL)); 7560be0d8bdSHansol Suh PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMultHermitianTransposeAddColumnRange_C", NULL)); 757f8103e6bSStefano Zampini 758f8103e6bSStefano Zampini PetscCall(PetscObjectCompose((PetscObject)mat, "DiagonalBlock", NULL)); 7593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7608965ea79SLois Curfman McInnes } 76139ddd567SLois Curfman McInnes 7629804daf3SBarry Smith #include <petscdraw.h> 763d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) 764d71ae5a4SJacob Faibussowitsch { 76539ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)mat->data; 766616b8fbbSStefano Zampini PetscMPIInt rank; 76719fd82e9SBarry Smith PetscViewerType vtype; 768ace3abfcSBarry Smith PetscBool iascii, isdraw; 769b0a32e0cSBarry Smith PetscViewer sviewer; 770f3ef73ceSBarry Smith PetscViewerFormat format; 7718965ea79SLois Curfman McInnes 7723a40ed3dSBarry Smith PetscFunctionBegin; 7739566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 7749566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 7759566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 77632077d6dSBarry Smith if (iascii) { 7779566063dSJacob Faibussowitsch PetscCall(PetscViewerGetType(viewer, &vtype)); 7789566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 779456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 7804e220ebcSLois Curfman McInnes MatInfo info; 7819566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 7829566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 7839371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, " [%d] local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %" PetscInt_FMT " \n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 7849371c9d4SSatish Balay (PetscInt)info.memory)); 7859566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 7869566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 7876f08ad05SPierre Jolivet if (mdn->Mvctx) PetscCall(PetscSFView(mdn->Mvctx, viewer)); 7883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 789fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 7903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 7918965ea79SLois Curfman McInnes } 792f1af5d2fSBarry Smith } else if (isdraw) { 793b0a32e0cSBarry Smith PetscDraw draw; 794ace3abfcSBarry Smith PetscBool isnull; 795f1af5d2fSBarry Smith 7969566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 7979566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 7983ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 799f1af5d2fSBarry Smith } 80077ed5343SBarry Smith 8017da1fb6eSBarry Smith { 8028965ea79SLois Curfman McInnes /* assemble the entire matrix onto first processor. */ 8038965ea79SLois Curfman McInnes Mat A; 804d0f46423SBarry Smith PetscInt M = mat->rmap->N, N = mat->cmap->N, m, row, i, nz; 805ba8c8a56SBarry Smith PetscInt *cols; 806ba8c8a56SBarry Smith PetscScalar *vals; 8078965ea79SLois Curfman McInnes 8089566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A)); 809dd400576SPatrick Sanan if (rank == 0) { 8109566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, M, N, M, N)); 8113a40ed3dSBarry Smith } else { 8129566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, 0, 0, M, N)); 8138965ea79SLois Curfman McInnes } 8147adad957SLisandro Dalcin /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */ 8159566063dSJacob Faibussowitsch PetscCall(MatSetType(A, MATMPIDENSE)); 8169566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(A, NULL)); 8178965ea79SLois Curfman McInnes 81839ddd567SLois Curfman McInnes /* Copy the matrix ... This isn't the most efficient means, 81939ddd567SLois Curfman McInnes but it's quick for now */ 82051022da4SBarry Smith A->insertmode = INSERT_VALUES; 8212205254eSKarl Rupp 8222205254eSKarl Rupp row = mat->rmap->rstart; 8232205254eSKarl Rupp m = mdn->A->rmap->n; 8248965ea79SLois Curfman McInnes for (i = 0; i < m; i++) { 8259566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIDense(mat, row, &nz, &cols, &vals)); 8269566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIDense(A, 1, &row, nz, cols, vals, INSERT_VALUES)); 8279566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIDense(mat, row, &nz, &cols, &vals)); 82839ddd567SLois Curfman McInnes row++; 8298965ea79SLois Curfman McInnes } 8308965ea79SLois Curfman McInnes 8319566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 8329566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 8339566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 834dd400576SPatrick Sanan if (rank == 0) { 835f4f49eeaSPierre Jolivet PetscCall(PetscObjectSetName((PetscObject)((Mat_MPIDense *)A->data)->A, ((PetscObject)mat)->name)); 836f4f49eeaSPierre Jolivet PetscCall(MatView_SeqDense(((Mat_MPIDense *)A->data)->A, sviewer)); 8378965ea79SLois Curfman McInnes } 8389566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 8399566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 8408965ea79SLois Curfman McInnes } 8413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8428965ea79SLois Curfman McInnes } 8438965ea79SLois Curfman McInnes 84466976f2fSJacob Faibussowitsch static PetscErrorCode MatView_MPIDense(Mat mat, PetscViewer viewer) 845d71ae5a4SJacob Faibussowitsch { 846ace3abfcSBarry Smith PetscBool iascii, isbinary, isdraw, issocket; 8478965ea79SLois Curfman McInnes 848433994e6SBarry Smith PetscFunctionBegin; 8499566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 8509566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 8519566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 8529566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 8530f5bd95cSBarry Smith 85432077d6dSBarry Smith if (iascii || issocket || isdraw) { 8559566063dSJacob Faibussowitsch PetscCall(MatView_MPIDense_ASCIIorDraworSocket(mat, viewer)); 8561baa6e33SBarry Smith } else if (isbinary) PetscCall(MatView_Dense_Binary(mat, viewer)); 8573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8588965ea79SLois Curfman McInnes } 8598965ea79SLois Curfman McInnes 86066976f2fSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIDense(Mat A, MatInfoType flag, MatInfo *info) 861d71ae5a4SJacob Faibussowitsch { 8623501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense *)A->data; 8633501a2bdSLois Curfman McInnes Mat mdn = mat->A; 8643966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 8658965ea79SLois Curfman McInnes 8663a40ed3dSBarry Smith PetscFunctionBegin; 8674e220ebcSLois Curfman McInnes info->block_size = 1.0; 8682205254eSKarl Rupp 8699566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mdn, MAT_LOCAL, info)); 8702205254eSKarl Rupp 8719371c9d4SSatish Balay isend[0] = info->nz_used; 8729371c9d4SSatish Balay isend[1] = info->nz_allocated; 8739371c9d4SSatish Balay isend[2] = info->nz_unneeded; 8749371c9d4SSatish Balay isend[3] = info->memory; 8759371c9d4SSatish Balay isend[4] = info->mallocs; 8768965ea79SLois Curfman McInnes if (flag == MAT_LOCAL) { 8774e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 8784e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 8794e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 8804e220ebcSLois Curfman McInnes info->memory = isend[3]; 8814e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 8828965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 883462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)A))); 8842205254eSKarl Rupp 8854e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 8864e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 8874e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 8884e220ebcSLois Curfman McInnes info->memory = irecv[3]; 8894e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 8908965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 891462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)A))); 8922205254eSKarl Rupp 8934e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 8944e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 8954e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 8964e220ebcSLois Curfman McInnes info->memory = irecv[3]; 8974e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 8988965ea79SLois Curfman McInnes } 8994e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 9004e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 9014e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 9023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9038965ea79SLois Curfman McInnes } 9048965ea79SLois Curfman McInnes 90566976f2fSJacob Faibussowitsch static PetscErrorCode MatSetOption_MPIDense(Mat A, MatOption op, PetscBool flg) 906d71ae5a4SJacob Faibussowitsch { 90739ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense *)A->data; 9088965ea79SLois Curfman McInnes 9093a40ed3dSBarry Smith PetscFunctionBegin; 91012c028f9SKris Buschelman switch (op) { 911512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 91212c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 91312c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 91443674050SBarry Smith MatCheckPreallocated(A, 1); 9159566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 91612c028f9SKris Buschelman break; 91712c028f9SKris Buschelman case MAT_ROW_ORIENTED: 91843674050SBarry Smith MatCheckPreallocated(A, 1); 9194e0d8c25SBarry Smith a->roworiented = flg; 9209566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 92112c028f9SKris Buschelman break; 922d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES: 923d71ae5a4SJacob Faibussowitsch a->donotstash = flg; 924d71ae5a4SJacob Faibussowitsch break; 92577e54ba9SKris Buschelman case MAT_SYMMETRIC: 92677e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 9279a4540c5SBarry Smith case MAT_HERMITIAN: 9289a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 929b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 930b94d7dedSBarry Smith case MAT_SPD: 931b94d7dedSBarry Smith case MAT_SPD_ETERNAL: 932b94d7dedSBarry Smith /* if the diagonal matrix is square it inherits some of the properties above */ 9339725ddffSPierre Jolivet if (a->A && A->rmap->n == A->cmap->n) PetscCall(MatSetOption(a->A, op, flg)); 93477e54ba9SKris Buschelman break; 935d71ae5a4SJacob Faibussowitsch default: 936*888c827cSStefano Zampini break; 9373a40ed3dSBarry Smith } 9383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9398965ea79SLois Curfman McInnes } 9408965ea79SLois Curfman McInnes 94166976f2fSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIDense(Mat A, Vec ll, Vec rr) 942d71ae5a4SJacob Faibussowitsch { 9435b2fa520SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)A->data; 944637a0070SStefano Zampini const PetscScalar *l; 945637a0070SStefano Zampini PetscScalar x, *v, *vv, *r; 946637a0070SStefano Zampini PetscInt i, j, s2a, s3a, s2, s3, m = mdn->A->rmap->n, n = mdn->A->cmap->n, lda; 9475b2fa520SLois Curfman McInnes 9485b2fa520SLois Curfman McInnes PetscFunctionBegin; 9499566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(mdn->A, &vv)); 9509566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(mdn->A, &lda)); 9519566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, &s2, &s3)); 9525b2fa520SLois Curfman McInnes if (ll) { 9539566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll, &s2a)); 95408401ef6SPierre Jolivet PetscCheck(s2a == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Left scaling vector non-conforming local size, %" PetscInt_FMT " != %" PetscInt_FMT, s2a, s2); 9559566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(ll, &l)); 9565b2fa520SLois Curfman McInnes for (i = 0; i < m; i++) { 9575b2fa520SLois Curfman McInnes x = l[i]; 958637a0070SStefano Zampini v = vv + i; 9599371c9d4SSatish Balay for (j = 0; j < n; j++) { 9609371c9d4SSatish Balay (*v) *= x; 9619371c9d4SSatish Balay v += lda; 9629371c9d4SSatish Balay } 9635b2fa520SLois Curfman McInnes } 9649566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(ll, &l)); 9659566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(1.0 * n * m)); 9665b2fa520SLois Curfman McInnes } 9675b2fa520SLois Curfman McInnes if (rr) { 968637a0070SStefano Zampini const PetscScalar *ar; 969637a0070SStefano Zampini 9709566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &s3a)); 97108401ef6SPierre Jolivet PetscCheck(s3a == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Right scaling vec non-conforming local size, %" PetscInt_FMT " != %" PetscInt_FMT ".", s3a, s3); 9729566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(rr, &ar)); 9736f08ad05SPierre Jolivet if (!mdn->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); 9749566063dSJacob Faibussowitsch PetscCall(VecGetArray(mdn->lvec, &r)); 9759566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(mdn->Mvctx, MPIU_SCALAR, ar, r, MPI_REPLACE)); 9769566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(mdn->Mvctx, MPIU_SCALAR, ar, r, MPI_REPLACE)); 9779566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(rr, &ar)); 9785b2fa520SLois Curfman McInnes for (i = 0; i < n; i++) { 9795b2fa520SLois Curfman McInnes x = r[i]; 980637a0070SStefano Zampini v = vv + i * lda; 9812205254eSKarl Rupp for (j = 0; j < m; j++) (*v++) *= x; 9825b2fa520SLois Curfman McInnes } 9839566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mdn->lvec, &r)); 9849566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(1.0 * n * m)); 9855b2fa520SLois Curfman McInnes } 9869566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(mdn->A, &vv)); 9873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9885b2fa520SLois Curfman McInnes } 9895b2fa520SLois Curfman McInnes 99066976f2fSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIDense(Mat A, NormType type, PetscReal *nrm) 991d71ae5a4SJacob Faibussowitsch { 9923501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense *)A->data; 99313f74950SBarry Smith PetscInt i, j; 994e91c04dfSPierre Jolivet PetscMPIInt size; 995329f5518SBarry Smith PetscReal sum = 0.0; 996637a0070SStefano Zampini const PetscScalar *av, *v; 9973501a2bdSLois Curfman McInnes 9983a40ed3dSBarry Smith PetscFunctionBegin; 9999566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(mdn->A, &av)); 1000637a0070SStefano Zampini v = av; 10019566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 1002616b8fbbSStefano Zampini if (size == 1) { 10039566063dSJacob Faibussowitsch PetscCall(MatNorm(mdn->A, type, nrm)); 10043501a2bdSLois Curfman McInnes } else { 10053501a2bdSLois Curfman McInnes if (type == NORM_FROBENIUS) { 1006d0f46423SBarry Smith for (i = 0; i < mdn->A->cmap->n * mdn->A->rmap->n; i++) { 10079371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 10089371c9d4SSatish Balay v++; 10093501a2bdSLois Curfman McInnes } 1010462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A))); 10118f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 10129566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * mdn->A->cmap->n * mdn->A->rmap->n)); 10133a40ed3dSBarry Smith } else if (type == NORM_1) { 1014e91c04dfSPierre Jolivet PetscReal *tmp; 1015e91c04dfSPierre Jolivet 1016e91c04dfSPierre Jolivet PetscCall(PetscCalloc1(A->cmap->N, &tmp)); 1017064f8208SBarry Smith *nrm = 0.0; 1018637a0070SStefano Zampini v = av; 1019d0f46423SBarry Smith for (j = 0; j < mdn->A->cmap->n; j++) { 1020d0f46423SBarry Smith for (i = 0; i < mdn->A->rmap->n; i++) { 10219371c9d4SSatish Balay tmp[j] += PetscAbsScalar(*v); 10229371c9d4SSatish Balay v++; 10233501a2bdSLois Curfman McInnes } 10243501a2bdSLois Curfman McInnes } 1025e91c04dfSPierre Jolivet PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, tmp, A->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A))); 1026d0f46423SBarry Smith for (j = 0; j < A->cmap->N; j++) { 1027e91c04dfSPierre Jolivet if (tmp[j] > *nrm) *nrm = tmp[j]; 10283501a2bdSLois Curfman McInnes } 1029e91c04dfSPierre Jolivet PetscCall(PetscFree(tmp)); 10309566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(A->cmap->n * A->rmap->n)); 10313a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 1032e91c04dfSPierre Jolivet PetscCall(MatNorm(mdn->A, type, nrm)); 1033e91c04dfSPierre Jolivet PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, nrm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A))); 1034ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "No support for two norm"); 10353501a2bdSLois Curfman McInnes } 10369566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(mdn->A, &av)); 10373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 10383501a2bdSLois Curfman McInnes } 10393501a2bdSLois Curfman McInnes 104066976f2fSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIDense(Mat A, MatReuse reuse, Mat *matout) 1041d71ae5a4SJacob Faibussowitsch { 10423501a2bdSLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense *)A->data; 10433501a2bdSLois Curfman McInnes Mat B; 1044d0f46423SBarry Smith PetscInt M = A->rmap->N, N = A->cmap->N, m, n, *rwork, rstart = A->rmap->rstart; 1045637a0070SStefano Zampini PetscInt j, i, lda; 104687828ca2SBarry Smith PetscScalar *v; 10473501a2bdSLois Curfman McInnes 10483a40ed3dSBarry Smith PetscFunctionBegin; 10497fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout)); 1050cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 10519566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 10529566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M)); 10539566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)A)->type_name)); 10549566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(B, NULL)); 1055637a0070SStefano Zampini } else B = *matout; 10563501a2bdSLois Curfman McInnes 10579371c9d4SSatish Balay m = a->A->rmap->n; 10589371c9d4SSatish Balay n = a->A->cmap->n; 10599566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A, (const PetscScalar **)&v)); 10609566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &lda)); 10619566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &rwork)); 10623501a2bdSLois Curfman McInnes for (i = 0; i < m; i++) rwork[i] = rstart + i; 10631acff37aSSatish Balay for (j = 0; j < n; j++) { 10649566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, 1, &j, m, rwork, v, INSERT_VALUES)); 10658e3a54c0SPierre Jolivet v = PetscSafePointerPlusOffset(v, lda); 10663501a2bdSLois Curfman McInnes } 10679566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A, (const PetscScalar **)&v)); 10689566063dSJacob Faibussowitsch PetscCall(PetscFree(rwork)); 10699566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 10709566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 1071cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) { 10723501a2bdSLois Curfman McInnes *matout = B; 10733501a2bdSLois Curfman McInnes } else { 10749566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(A, &B)); 10753501a2bdSLois Curfman McInnes } 10763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1077096963f5SLois Curfman McInnes } 1078096963f5SLois Curfman McInnes 10796849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat, MatDuplicateOption, Mat *); 108052c5f739Sprj- PETSC_INTERN PetscErrorCode MatScale_MPIDense(Mat, PetscScalar); 10818965ea79SLois Curfman McInnes 108266976f2fSJacob Faibussowitsch static PetscErrorCode MatSetUp_MPIDense(Mat A) 1083d71ae5a4SJacob Faibussowitsch { 1084273d9f13SBarry Smith PetscFunctionBegin; 10859566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->rmap)); 10869566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->cmap)); 108748a46eb9SPierre Jolivet if (!A->preallocated) PetscCall(MatMPIDenseSetPreallocation(A, NULL)); 10883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1089273d9f13SBarry Smith } 1090273d9f13SBarry Smith 109166976f2fSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIDense(Mat Y, PetscScalar alpha, Mat X, MatStructure str) 1092d71ae5a4SJacob Faibussowitsch { 1093488007eeSBarry Smith Mat_MPIDense *A = (Mat_MPIDense *)Y->data, *B = (Mat_MPIDense *)X->data; 1094488007eeSBarry Smith 1095488007eeSBarry Smith PetscFunctionBegin; 10969566063dSJacob Faibussowitsch PetscCall(MatAXPY(A->A, alpha, B->A, str)); 10973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1098488007eeSBarry Smith } 1099488007eeSBarry Smith 110066976f2fSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIDense(Mat mat) 1101d71ae5a4SJacob Faibussowitsch { 1102ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense *)mat->data; 1103ba337c44SJed Brown 1104ba337c44SJed Brown PetscFunctionBegin; 11059566063dSJacob Faibussowitsch PetscCall(MatConjugate(a->A)); 11063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1107ba337c44SJed Brown } 1108ba337c44SJed Brown 110966976f2fSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIDense(Mat A) 1110d71ae5a4SJacob Faibussowitsch { 1111ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense *)A->data; 1112ba337c44SJed Brown 1113ba337c44SJed Brown PetscFunctionBegin; 11149566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 11153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1116ba337c44SJed Brown } 1117ba337c44SJed Brown 111866976f2fSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIDense(Mat A) 1119d71ae5a4SJacob Faibussowitsch { 1120ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense *)A->data; 1121ba337c44SJed Brown 1122ba337c44SJed Brown PetscFunctionBegin; 11239566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 11243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1125ba337c44SJed Brown } 1126ba337c44SJed Brown 1127d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatGetColumnVector_MPIDense(Mat A, Vec v, PetscInt col) 1128d71ae5a4SJacob Faibussowitsch { 1129637a0070SStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 113049a6ff4bSBarry Smith 113149a6ff4bSBarry Smith PetscFunctionBegin; 113228b400f6SJacob Faibussowitsch PetscCheck(a->A, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Missing local matrix"); 113328b400f6SJacob Faibussowitsch PetscCheck(a->A->ops->getcolumnvector, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Missing get column operation"); 11349566063dSJacob Faibussowitsch PetscCall((*a->A->ops->getcolumnvector)(a->A, v, col)); 11353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 113649a6ff4bSBarry Smith } 113749a6ff4bSBarry Smith 1138857cbf51SRichard Tran Mills PETSC_INTERN PetscErrorCode MatGetColumnReductions_SeqDense(Mat, PetscInt, PetscReal *); 113952c5f739Sprj- 114066976f2fSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIDense(Mat A, PetscInt type, PetscReal *reductions) 1141d71ae5a4SJacob Faibussowitsch { 1142a873a8cdSSam Reynolds PetscInt i, m, n; 11430716a85fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense *)A->data; 11440716a85fSBarry Smith 11450716a85fSBarry Smith PetscFunctionBegin; 11469566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &n)); 1147857cbf51SRichard Tran Mills if (type == REDUCTION_MEAN_REALPART) { 1148e91c04dfSPierre Jolivet PetscCall(MatGetColumnReductions_SeqDense(a->A, (PetscInt)REDUCTION_SUM_REALPART, reductions)); 1149857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_IMAGINARYPART) { 1150e91c04dfSPierre Jolivet PetscCall(MatGetColumnReductions_SeqDense(a->A, (PetscInt)REDUCTION_SUM_IMAGINARYPART, reductions)); 1151a873a8cdSSam Reynolds } else { 1152e91c04dfSPierre Jolivet PetscCall(MatGetColumnReductions_SeqDense(a->A, type, reductions)); 1153a873a8cdSSam Reynolds } 1154857cbf51SRichard Tran Mills if (type == NORM_2) { 1155e91c04dfSPierre Jolivet for (i = 0; i < n; i++) reductions[i] *= reductions[i]; 11560716a85fSBarry Smith } 1157857cbf51SRichard Tran Mills if (type == NORM_INFINITY) { 1158e91c04dfSPierre Jolivet PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, reductions, n, MPIU_REAL, MPIU_MAX, A->hdr.comm)); 11590716a85fSBarry Smith } else { 1160e91c04dfSPierre Jolivet PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, reductions, n, MPIU_REAL, MPIU_SUM, A->hdr.comm)); 11610716a85fSBarry Smith } 1162857cbf51SRichard Tran Mills if (type == NORM_2) { 1163a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] = PetscSqrtReal(reductions[i]); 1164857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 1165a873a8cdSSam Reynolds for (i = 0; i < n; i++) reductions[i] /= m; 11660716a85fSBarry Smith } 11673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 11680716a85fSBarry Smith } 11690716a85fSBarry Smith 1170d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetRandom_MPIDense(Mat x, PetscRandom rctx) 1171d71ae5a4SJacob Faibussowitsch { 117273a71a0fSBarry Smith Mat_MPIDense *d = (Mat_MPIDense *)x->data; 117373a71a0fSBarry Smith 117473a71a0fSBarry Smith PetscFunctionBegin; 11759566063dSJacob Faibussowitsch PetscCall(MatSetRandom(d->A, rctx)); 11763faff063SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 11773faff063SStefano Zampini x->offloadmask = d->A->offloadmask; 11783faff063SStefano Zampini #endif 11793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 118073a71a0fSBarry Smith } 118173a71a0fSBarry Smith 1182d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIDense(Mat A, PetscBool *missing, PetscInt *d) 1183d71ae5a4SJacob Faibussowitsch { 11843b49f96aSBarry Smith PetscFunctionBegin; 11853b49f96aSBarry Smith *missing = PETSC_FALSE; 11863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 11873b49f96aSBarry Smith } 11883b49f96aSBarry Smith 11894222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat, Mat, PetscReal, Mat); 1190cc48ffa7SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat, Mat, Mat); 11916718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat, Mat, PetscReal, Mat); 1192a1f9a5e6SStefano Zampini static PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat, Mat, Mat); 11936718818eSStefano Zampini static PetscErrorCode MatEqual_MPIDense(Mat, Mat, PetscBool *); 11946718818eSStefano Zampini static PetscErrorCode MatLoad_MPIDense(Mat, PetscViewer); 11955d8c7819SPierre Jolivet static PetscErrorCode MatProductSetFromOptions_MPIDense(Mat); 1196cc48ffa7SToby Isaac 119709dc0095SBarry Smith static struct _MatOps MatOps_Values = {MatSetValues_MPIDense, 119809dc0095SBarry Smith MatGetRow_MPIDense, 119909dc0095SBarry Smith MatRestoreRow_MPIDense, 120009dc0095SBarry Smith MatMult_MPIDense, 120197304618SKris Buschelman /* 4*/ MatMultAdd_MPIDense, 12027c922b88SBarry Smith MatMultTranspose_MPIDense, 12037c922b88SBarry Smith MatMultTransposeAdd_MPIDense, 1204f4259b30SLisandro Dalcin NULL, 1205f4259b30SLisandro Dalcin NULL, 1206f4259b30SLisandro Dalcin NULL, 1207f4259b30SLisandro Dalcin /* 10*/ NULL, 1208f4259b30SLisandro Dalcin NULL, 1209f4259b30SLisandro Dalcin NULL, 1210f4259b30SLisandro Dalcin NULL, 121109dc0095SBarry Smith MatTranspose_MPIDense, 121297304618SKris Buschelman /* 15*/ MatGetInfo_MPIDense, 12136e4ee0c6SHong Zhang MatEqual_MPIDense, 121409dc0095SBarry Smith MatGetDiagonal_MPIDense, 12155b2fa520SLois Curfman McInnes MatDiagonalScale_MPIDense, 121609dc0095SBarry Smith MatNorm_MPIDense, 121797304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPIDense, 121809dc0095SBarry Smith MatAssemblyEnd_MPIDense, 121909dc0095SBarry Smith MatSetOption_MPIDense, 122009dc0095SBarry Smith MatZeroEntries_MPIDense, 1221d519adbfSMatthew Knepley /* 24*/ MatZeroRows_MPIDense, 1222f4259b30SLisandro Dalcin NULL, 1223f4259b30SLisandro Dalcin NULL, 1224f4259b30SLisandro Dalcin NULL, 1225f4259b30SLisandro Dalcin NULL, 12264994cf47SJed Brown /* 29*/ MatSetUp_MPIDense, 1227f4259b30SLisandro Dalcin NULL, 1228f4259b30SLisandro Dalcin NULL, 1229c56a70eeSBarry Smith MatGetDiagonalBlock_MPIDense, 1230f4259b30SLisandro Dalcin NULL, 1231d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPIDense, 1232f4259b30SLisandro Dalcin NULL, 1233f4259b30SLisandro Dalcin NULL, 1234f4259b30SLisandro Dalcin NULL, 1235f4259b30SLisandro Dalcin NULL, 1236d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPIDense, 12377dae84e0SHong Zhang MatCreateSubMatrices_MPIDense, 1238f4259b30SLisandro Dalcin NULL, 123909dc0095SBarry Smith MatGetValues_MPIDense, 1240a76f77c3SStefano Zampini MatCopy_MPIDense, 1241f4259b30SLisandro Dalcin /* 44*/ NULL, 124209dc0095SBarry Smith MatScale_MPIDense, 12432f605a99SJose E. Roman MatShift_MPIDense, 1244f4259b30SLisandro Dalcin NULL, 1245f4259b30SLisandro Dalcin NULL, 124673a71a0fSBarry Smith /* 49*/ MatSetRandom_MPIDense, 1247f4259b30SLisandro Dalcin NULL, 1248f4259b30SLisandro Dalcin NULL, 1249f4259b30SLisandro Dalcin NULL, 1250f4259b30SLisandro Dalcin NULL, 1251f4259b30SLisandro Dalcin /* 54*/ NULL, 1252f4259b30SLisandro Dalcin NULL, 1253f4259b30SLisandro Dalcin NULL, 1254f4259b30SLisandro Dalcin NULL, 1255f4259b30SLisandro Dalcin NULL, 12567dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPIDense, 1257b9b97703SBarry Smith MatDestroy_MPIDense, 1258b9b97703SBarry Smith MatView_MPIDense, 1259f4259b30SLisandro Dalcin NULL, 1260f4259b30SLisandro Dalcin NULL, 1261f4259b30SLisandro Dalcin /* 64*/ NULL, 1262f4259b30SLisandro Dalcin NULL, 1263f4259b30SLisandro Dalcin NULL, 1264f4259b30SLisandro Dalcin NULL, 1265f4259b30SLisandro Dalcin NULL, 1266f4259b30SLisandro Dalcin /* 69*/ NULL, 1267f4259b30SLisandro Dalcin NULL, 1268f4259b30SLisandro Dalcin NULL, 1269f4259b30SLisandro Dalcin NULL, 1270f4259b30SLisandro Dalcin NULL, 1271f4259b30SLisandro Dalcin /* 74*/ NULL, 1272f4259b30SLisandro Dalcin NULL, 1273f4259b30SLisandro Dalcin NULL, 1274f4259b30SLisandro Dalcin NULL, 1275f4259b30SLisandro Dalcin NULL, 1276f4259b30SLisandro Dalcin /* 79*/ NULL, 1277f4259b30SLisandro Dalcin NULL, 1278f4259b30SLisandro Dalcin NULL, 1279f4259b30SLisandro Dalcin NULL, 12805bba2384SShri Abhyankar /* 83*/ MatLoad_MPIDense, 1281f4259b30SLisandro Dalcin NULL, 1282f4259b30SLisandro Dalcin NULL, 1283f4259b30SLisandro Dalcin NULL, 1284f4259b30SLisandro Dalcin NULL, 1285f4259b30SLisandro Dalcin NULL, 1286f4259b30SLisandro Dalcin /* 89*/ NULL, 1287f4259b30SLisandro Dalcin NULL, 1288f4259b30SLisandro Dalcin NULL, 1289f4259b30SLisandro Dalcin NULL, 1290f4259b30SLisandro Dalcin NULL, 1291f4259b30SLisandro Dalcin /* 94*/ NULL, 1292f4259b30SLisandro Dalcin NULL, 12936718818eSStefano Zampini MatMatTransposeMultSymbolic_MPIDense_MPIDense, 1294cc48ffa7SToby Isaac MatMatTransposeMultNumeric_MPIDense_MPIDense, 1295f4259b30SLisandro Dalcin NULL, 12964222ddf1SHong Zhang /* 99*/ MatProductSetFromOptions_MPIDense, 1297f4259b30SLisandro Dalcin NULL, 1298f4259b30SLisandro Dalcin NULL, 1299ba337c44SJed Brown MatConjugate_MPIDense, 1300f4259b30SLisandro Dalcin NULL, 1301f4259b30SLisandro Dalcin /*104*/ NULL, 1302ba337c44SJed Brown MatRealPart_MPIDense, 1303ba337c44SJed Brown MatImaginaryPart_MPIDense, 1304f4259b30SLisandro Dalcin NULL, 1305f4259b30SLisandro Dalcin NULL, 1306f4259b30SLisandro Dalcin /*109*/ NULL, 1307f4259b30SLisandro Dalcin NULL, 1308f4259b30SLisandro Dalcin NULL, 130949a6ff4bSBarry Smith MatGetColumnVector_MPIDense, 13103b49f96aSBarry Smith MatMissingDiagonal_MPIDense, 1311f4259b30SLisandro Dalcin /*114*/ NULL, 1312f4259b30SLisandro Dalcin NULL, 1313f4259b30SLisandro Dalcin NULL, 1314f4259b30SLisandro Dalcin NULL, 1315f4259b30SLisandro Dalcin NULL, 1316f4259b30SLisandro Dalcin /*119*/ NULL, 1317f4259b30SLisandro Dalcin NULL, 1318459e8d23SBlanca Mellado Pinto MatMultHermitianTranspose_MPIDense, 1319459e8d23SBlanca Mellado Pinto MatMultHermitianTransposeAdd_MPIDense, 1320f4259b30SLisandro Dalcin NULL, 1321f4259b30SLisandro Dalcin /*124*/ NULL, 1322a873a8cdSSam Reynolds MatGetColumnReductions_MPIDense, 1323f4259b30SLisandro Dalcin NULL, 1324f4259b30SLisandro Dalcin NULL, 1325f4259b30SLisandro Dalcin NULL, 1326f4259b30SLisandro Dalcin /*129*/ NULL, 1327f4259b30SLisandro Dalcin NULL, 13286718818eSStefano Zampini MatTransposeMatMultSymbolic_MPIDense_MPIDense, 1329cb20be35SHong Zhang MatTransposeMatMultNumeric_MPIDense_MPIDense, 1330f4259b30SLisandro Dalcin NULL, 1331f4259b30SLisandro Dalcin /*134*/ NULL, 1332f4259b30SLisandro Dalcin NULL, 1333f4259b30SLisandro Dalcin NULL, 1334f4259b30SLisandro Dalcin NULL, 1335f4259b30SLisandro Dalcin NULL, 1336f4259b30SLisandro Dalcin /*139*/ NULL, 1337f4259b30SLisandro Dalcin NULL, 1338f4259b30SLisandro Dalcin NULL, 1339f4259b30SLisandro Dalcin NULL, 1340f4259b30SLisandro Dalcin NULL, 13414222ddf1SHong Zhang MatCreateMPIMatConcatenateSeqMat_MPIDense, 1342f4259b30SLisandro Dalcin /*145*/ NULL, 1343f4259b30SLisandro Dalcin NULL, 134499a7f59eSMark Adams NULL, 134599a7f59eSMark Adams NULL, 13467fb60732SBarry Smith NULL, 1347dec0b466SHong Zhang /*150*/ NULL, 1348eede4a3fSMark Adams NULL, 13494cc2b5b5SPierre Jolivet NULL, 135042ce410bSJunchao Zhang NULL, 135142ce410bSJunchao Zhang NULL, 1352fe1fc275SAlexander /*155*/ NULL, 1353dec0b466SHong Zhang NULL}; 13548965ea79SLois Curfman McInnes 135566976f2fSJacob Faibussowitsch static PetscErrorCode MatMPIDenseSetPreallocation_MPIDense(Mat mat, PetscScalar *data) 1356d71ae5a4SJacob Faibussowitsch { 1357637a0070SStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)mat->data; 135847d993e7Ssuyashtn MatType mtype = MATSEQDENSE; 1359a23d5eceSKris Buschelman 1360a23d5eceSKris Buschelman PetscFunctionBegin; 136128b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)mat), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 13629566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 13639566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 1364637a0070SStefano Zampini if (!a->A) { 13659566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &a->A)); 13669566063dSJacob Faibussowitsch PetscCall(MatSetSizes(a->A, mat->rmap->n, mat->cmap->N, mat->rmap->n, mat->cmap->N)); 1367637a0070SStefano Zampini } 136847d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) 136947d993e7Ssuyashtn PetscBool iscuda; 13709566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)mat, MATMPIDENSECUDA, &iscuda)); 137147d993e7Ssuyashtn if (iscuda) mtype = MATSEQDENSECUDA; 137247d993e7Ssuyashtn #endif 137347d993e7Ssuyashtn #if defined(PETSC_HAVE_HIP) 137447d993e7Ssuyashtn PetscBool iship; 137547d993e7Ssuyashtn PetscCall(PetscObjectTypeCompare((PetscObject)mat, MATMPIDENSEHIP, &iship)); 137647d993e7Ssuyashtn if (iship) mtype = MATSEQDENSEHIP; 137747d993e7Ssuyashtn #endif 137847d993e7Ssuyashtn PetscCall(MatSetType(a->A, mtype)); 13799566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(a->A, data)); 138047d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) 13813faff063SStefano Zampini mat->offloadmask = a->A->offloadmask; 13823faff063SStefano Zampini #endif 1383637a0070SStefano Zampini mat->preallocated = PETSC_TRUE; 13846f08ad05SPierre Jolivet mat->assembled = PETSC_TRUE; 13853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1386a23d5eceSKris Buschelman } 1387a23d5eceSKris Buschelman 1388d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIDense(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 1389d71ae5a4SJacob Faibussowitsch { 13904e29119aSPierre Jolivet Mat B, C; 13914e29119aSPierre Jolivet 13924e29119aSPierre Jolivet PetscFunctionBegin; 13939566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &C)); 13949566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqAIJ_SeqDense(C, MATSEQDENSE, MAT_INITIAL_MATRIX, &B)); 13959566063dSJacob Faibussowitsch PetscCall(MatDestroy(&C)); 13964e29119aSPierre Jolivet if (reuse == MAT_REUSE_MATRIX) { 13974e29119aSPierre Jolivet C = *newmat; 13984e29119aSPierre Jolivet } else C = NULL; 13999566063dSJacob Faibussowitsch PetscCall(MatCreateMPIMatConcatenateSeqMat(PetscObjectComm((PetscObject)A), B, A->cmap->n, !C ? MAT_INITIAL_MATRIX : MAT_REUSE_MATRIX, &C)); 14009566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 14014e29119aSPierre Jolivet if (reuse == MAT_INPLACE_MATRIX) { 14029566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &C)); 14034e29119aSPierre Jolivet } else if (reuse == MAT_INITIAL_MATRIX) *newmat = C; 14043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14054e29119aSPierre Jolivet } 14064e29119aSPierre Jolivet 140766976f2fSJacob Faibussowitsch static PetscErrorCode MatConvert_MPIDense_MPIAIJ(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 1408d71ae5a4SJacob Faibussowitsch { 14094e29119aSPierre Jolivet Mat B, C; 14104e29119aSPierre Jolivet 14114e29119aSPierre Jolivet PetscFunctionBegin; 14129566063dSJacob Faibussowitsch PetscCall(MatDenseGetLocalMatrix(A, &C)); 14139566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqDense_SeqAIJ(C, MATSEQAIJ, MAT_INITIAL_MATRIX, &B)); 14144e29119aSPierre Jolivet if (reuse == MAT_REUSE_MATRIX) { 14154e29119aSPierre Jolivet C = *newmat; 14164e29119aSPierre Jolivet } else C = NULL; 14179566063dSJacob Faibussowitsch PetscCall(MatCreateMPIMatConcatenateSeqMat(PetscObjectComm((PetscObject)A), B, A->cmap->n, !C ? MAT_INITIAL_MATRIX : MAT_REUSE_MATRIX, &C)); 14189566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 14194e29119aSPierre Jolivet if (reuse == MAT_INPLACE_MATRIX) { 14209566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &C)); 14214e29119aSPierre Jolivet } else if (reuse == MAT_INITIAL_MATRIX) *newmat = C; 14223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14234e29119aSPierre Jolivet } 14244e29119aSPierre Jolivet 142565b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 1426d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIDense_Elemental(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 1427d71ae5a4SJacob Faibussowitsch { 1428f709e8d7SPierre Jolivet Mat_MPIDense *a = (Mat_MPIDense *)A->data; 14298ea901baSHong Zhang Mat mat_elemental; 143032d7a744SHong Zhang PetscScalar *v; 1431f709e8d7SPierre Jolivet PetscInt m = A->rmap->n, N = A->cmap->N, rstart = A->rmap->rstart, i, *rows, *cols, lda; 14328ea901baSHong Zhang 14338baccfbdSHong Zhang PetscFunctionBegin; 1434378336b6SHong Zhang if (reuse == MAT_REUSE_MATRIX) { 1435378336b6SHong Zhang mat_elemental = *newmat; 14369566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(*newmat)); 1437378336b6SHong Zhang } else { 14389566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental)); 14399566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat_elemental, PETSC_DECIDE, PETSC_DECIDE, A->rmap->N, A->cmap->N)); 14409566063dSJacob Faibussowitsch PetscCall(MatSetType(mat_elemental, MATELEMENTAL)); 14419566063dSJacob Faibussowitsch PetscCall(MatSetUp(mat_elemental)); 14429566063dSJacob Faibussowitsch PetscCall(MatSetOption(mat_elemental, MAT_ROW_ORIENTED, PETSC_FALSE)); 1443378336b6SHong Zhang } 1444378336b6SHong Zhang 14459566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &rows, N, &cols)); 144632d7a744SHong Zhang for (i = 0; i < N; i++) cols[i] = i; 144732d7a744SHong Zhang for (i = 0; i < m; i++) rows[i] = rstart + i; 14488ea901baSHong Zhang 1449637a0070SStefano Zampini /* PETSc-Elemental interface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */ 14509566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(A, &v)); 1451f709e8d7SPierre Jolivet PetscCall(MatDenseGetLDA(a->A, &lda)); 1452f709e8d7SPierre Jolivet if (lda == m) PetscCall(MatSetValues(mat_elemental, m, rows, N, cols, v, ADD_VALUES)); 1453f709e8d7SPierre Jolivet else { 1454f709e8d7SPierre Jolivet for (i = 0; i < N; i++) PetscCall(MatSetValues(mat_elemental, m, rows, 1, &i, v + lda * i, ADD_VALUES)); 1455f709e8d7SPierre Jolivet } 14569566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY)); 14579566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY)); 14589566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(A, &v)); 14599566063dSJacob Faibussowitsch PetscCall(PetscFree2(rows, cols)); 14608ea901baSHong Zhang 1461511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 14629566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &mat_elemental)); 14638ea901baSHong Zhang } else { 14648ea901baSHong Zhang *newmat = mat_elemental; 14658ea901baSHong Zhang } 14663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14678baccfbdSHong Zhang } 146865b80a83SHong Zhang #endif 14698baccfbdSHong Zhang 1470d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseGetColumn_MPIDense(Mat A, PetscInt col, PetscScalar **vals) 1471d71ae5a4SJacob Faibussowitsch { 147286aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense *)A->data; 147386aefd0dSHong Zhang 147486aefd0dSHong Zhang PetscFunctionBegin; 14759566063dSJacob Faibussowitsch PetscCall(MatDenseGetColumn(mat->A, col, vals)); 14763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 147786aefd0dSHong Zhang } 147886aefd0dSHong Zhang 1479d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDenseRestoreColumn_MPIDense(Mat A, PetscScalar **vals) 1480d71ae5a4SJacob Faibussowitsch { 148186aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense *)A->data; 148286aefd0dSHong Zhang 148386aefd0dSHong Zhang PetscFunctionBegin; 14849566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreColumn(mat->A, vals)); 14853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 148686aefd0dSHong Zhang } 148786aefd0dSHong Zhang 1488d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIDense(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) 1489d71ae5a4SJacob Faibussowitsch { 149094e2cb23SJakub Kruzik Mat_MPIDense *mat; 149194e2cb23SJakub Kruzik PetscInt m, nloc, N; 149294e2cb23SJakub Kruzik 149394e2cb23SJakub Kruzik PetscFunctionBegin; 14949566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat, &m, &N)); 14959566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(inmat, NULL, &nloc)); 149694e2cb23SJakub Kruzik if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 149794e2cb23SJakub Kruzik PetscInt sum; 149894e2cb23SJakub Kruzik 149948a46eb9SPierre Jolivet if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnership(comm, &n, &N)); 150094e2cb23SJakub Kruzik /* Check sum(n) = N */ 1501462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&n, &sum, 1, MPIU_INT, MPI_SUM, comm)); 150208401ef6SPierre Jolivet PetscCheck(sum == N, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local columns %" PetscInt_FMT " != global columns %" PetscInt_FMT, sum, N); 150394e2cb23SJakub Kruzik 15049566063dSJacob Faibussowitsch PetscCall(MatCreateDense(comm, m, n, PETSC_DETERMINE, N, NULL, outmat)); 15059566063dSJacob Faibussowitsch PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 150694e2cb23SJakub Kruzik } 150794e2cb23SJakub Kruzik 150894e2cb23SJakub Kruzik /* numeric phase */ 150994e2cb23SJakub Kruzik mat = (Mat_MPIDense *)(*outmat)->data; 15109566063dSJacob Faibussowitsch PetscCall(MatCopy(inmat, mat->A, SAME_NONZERO_PATTERN)); 15113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 151294e2cb23SJakub Kruzik } 151394e2cb23SJakub Kruzik 1514d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetColumnVec_MPIDense(Mat A, PetscInt col, Vec *v) 1515d71ae5a4SJacob Faibussowitsch { 15166947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 15176947451fSStefano Zampini PetscInt lda; 15186947451fSStefano Zampini 15196947451fSStefano Zampini PetscFunctionBegin; 152028b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 152128b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 1522d16ceb75SStefano Zampini if (!a->cvec) PetscCall(MatDenseCreateColumnVec_Private(A, &a->cvec)); 15236947451fSStefano Zampini a->vecinuse = col + 1; 15249566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &lda)); 15259566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(a->A, (PetscScalar **)&a->ptrinuse)); 15268e3a54c0SPierre Jolivet PetscCall(VecPlaceArray(a->cvec, PetscSafePointerPlusOffset(a->ptrinuse, (size_t)col * (size_t)lda))); 15276947451fSStefano Zampini *v = a->cvec; 15283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15296947451fSStefano Zampini } 15306947451fSStefano Zampini 1531d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreColumnVec_MPIDense(Mat A, PetscInt col, Vec *v) 1532d71ae5a4SJacob Faibussowitsch { 15336947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 15346947451fSStefano Zampini 15356947451fSStefano Zampini PetscFunctionBegin; 153628b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse, PETSC_COMM_SELF, PETSC_ERR_ORDER, "Need to call MatDenseGetColumnVec() first"); 153728b400f6SJacob Faibussowitsch PetscCheck(a->cvec, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Missing internal column vector"); 15384186a4bbSPierre Jolivet VecCheckAssembled(a->cvec); 15396947451fSStefano Zampini a->vecinuse = 0; 15409566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(a->A, (PetscScalar **)&a->ptrinuse)); 15419566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 1542742765d3SMatthew Knepley if (v) *v = NULL; 15433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15446947451fSStefano Zampini } 15456947451fSStefano Zampini 1546d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetColumnVecRead_MPIDense(Mat A, PetscInt col, Vec *v) 1547d71ae5a4SJacob Faibussowitsch { 15486947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 15496947451fSStefano Zampini PetscInt lda; 15506947451fSStefano Zampini 15516947451fSStefano Zampini PetscFunctionBegin; 155228b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 155328b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 1554d16ceb75SStefano Zampini if (!a->cvec) PetscCall(MatDenseCreateColumnVec_Private(A, &a->cvec)); 15556947451fSStefano Zampini a->vecinuse = col + 1; 15569566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &lda)); 15579566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A, &a->ptrinuse)); 15588e3a54c0SPierre Jolivet PetscCall(VecPlaceArray(a->cvec, PetscSafePointerPlusOffset(a->ptrinuse, (size_t)col * (size_t)lda))); 15599566063dSJacob Faibussowitsch PetscCall(VecLockReadPush(a->cvec)); 15606947451fSStefano Zampini *v = a->cvec; 15613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15626947451fSStefano Zampini } 15636947451fSStefano Zampini 1564d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreColumnVecRead_MPIDense(Mat A, PetscInt col, Vec *v) 1565d71ae5a4SJacob Faibussowitsch { 15666947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 15676947451fSStefano Zampini 15686947451fSStefano Zampini PetscFunctionBegin; 15695f80ce2aSJacob Faibussowitsch PetscCheck(a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseGetColumnVec() first"); 15705f80ce2aSJacob Faibussowitsch PetscCheck(a->cvec, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing internal column vector"); 15714186a4bbSPierre Jolivet VecCheckAssembled(a->cvec); 15726947451fSStefano Zampini a->vecinuse = 0; 15739566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A, &a->ptrinuse)); 15749566063dSJacob Faibussowitsch PetscCall(VecLockReadPop(a->cvec)); 15759566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 1576742765d3SMatthew Knepley if (v) *v = NULL; 15773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15786947451fSStefano Zampini } 15796947451fSStefano Zampini 1580d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseGetColumnVecWrite_MPIDense(Mat A, PetscInt col, Vec *v) 1581d71ae5a4SJacob Faibussowitsch { 15826947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 15836947451fSStefano Zampini PetscInt lda; 15846947451fSStefano Zampini 15856947451fSStefano Zampini PetscFunctionBegin; 15865f80ce2aSJacob Faibussowitsch PetscCheck(!a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 15875f80ce2aSJacob Faibussowitsch PetscCheck(!a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 1588d16ceb75SStefano Zampini if (!a->cvec) PetscCall(MatDenseCreateColumnVec_Private(A, &a->cvec)); 15896947451fSStefano Zampini a->vecinuse = col + 1; 15909566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &lda)); 15919566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(a->A, (PetscScalar **)&a->ptrinuse)); 15928e3a54c0SPierre Jolivet PetscCall(VecPlaceArray(a->cvec, PetscSafePointerPlusOffset(a->ptrinuse, (size_t)col * (size_t)lda))); 15936947451fSStefano Zampini *v = a->cvec; 15943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15956947451fSStefano Zampini } 15966947451fSStefano Zampini 1597d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDense(Mat A, PetscInt col, Vec *v) 1598d71ae5a4SJacob Faibussowitsch { 15996947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense *)A->data; 16006947451fSStefano Zampini 16016947451fSStefano Zampini PetscFunctionBegin; 16025f80ce2aSJacob Faibussowitsch PetscCheck(a->vecinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseGetColumnVec() first"); 16035f80ce2aSJacob Faibussowitsch PetscCheck(a->cvec, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing internal column vector"); 16044186a4bbSPierre Jolivet VecCheckAssembled(a->cvec); 16056947451fSStefano Zampini a->vecinuse = 0; 16069566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(a->A, (PetscScalar **)&a->ptrinuse)); 16079566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 1608742765d3SMatthew Knepley if (v) *v = NULL; 16093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16106947451fSStefano Zampini } 16116947451fSStefano Zampini 161266976f2fSJacob Faibussowitsch static PetscErrorCode MatDenseGetSubMatrix_MPIDense(Mat A, PetscInt rbegin, PetscInt rend, PetscInt cbegin, PetscInt cend, Mat *v) 1613d71ae5a4SJacob Faibussowitsch { 16145ea7661aSPierre Jolivet Mat_MPIDense *a = (Mat_MPIDense *)A->data; 1615616b8fbbSStefano Zampini Mat_MPIDense *c; 1616616b8fbbSStefano Zampini MPI_Comm comm; 1617a2748737SPierre Jolivet PetscInt pbegin, pend; 16185ea7661aSPierre Jolivet 16195ea7661aSPierre Jolivet PetscFunctionBegin; 16209566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 16215f80ce2aSJacob Faibussowitsch PetscCheck(!a->vecinuse, comm, PETSC_ERR_ORDER, "Need to call MatDenseRestoreColumnVec() first"); 16225f80ce2aSJacob Faibussowitsch PetscCheck(!a->matinuse, comm, PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 1623a2748737SPierre Jolivet pbegin = PetscMax(0, PetscMin(A->rmap->rend, rbegin) - A->rmap->rstart); 1624a2748737SPierre Jolivet pend = PetscMin(A->rmap->n, PetscMax(0, rend - A->rmap->rstart)); 16255ea7661aSPierre Jolivet if (!a->cmat) { 16269566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &a->cmat)); 16279566063dSJacob Faibussowitsch PetscCall(MatSetType(a->cmat, ((PetscObject)A)->type_name)); 1628a2748737SPierre Jolivet if (rend - rbegin == A->rmap->N) PetscCall(PetscLayoutReference(A->rmap, &a->cmat->rmap)); 1629a2748737SPierre Jolivet else { 1630a2748737SPierre Jolivet PetscCall(PetscLayoutSetLocalSize(a->cmat->rmap, pend - pbegin)); 1631a2748737SPierre Jolivet PetscCall(PetscLayoutSetSize(a->cmat->rmap, rend - rbegin)); 1632a2748737SPierre Jolivet PetscCall(PetscLayoutSetUp(a->cmat->rmap)); 1633a2748737SPierre Jolivet } 16349566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(a->cmat->cmap, cend - cbegin)); 16359566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(a->cmat->cmap)); 1636a2748737SPierre Jolivet } else { 1637a2748737SPierre Jolivet PetscBool same = (PetscBool)(rend - rbegin == a->cmat->rmap->N); 1638a2748737SPierre Jolivet if (same && a->cmat->rmap->N != A->rmap->N) { 1639a2748737SPierre Jolivet same = (PetscBool)(pend - pbegin == a->cmat->rmap->n); 1640462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &same, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 1641a2748737SPierre Jolivet } 1642a2748737SPierre Jolivet if (!same) { 1643a2748737SPierre Jolivet PetscCall(PetscLayoutDestroy(&a->cmat->rmap)); 1644a2748737SPierre Jolivet PetscCall(PetscLayoutCreate(comm, &a->cmat->rmap)); 1645a2748737SPierre Jolivet PetscCall(PetscLayoutSetLocalSize(a->cmat->rmap, pend - pbegin)); 1646a2748737SPierre Jolivet PetscCall(PetscLayoutSetSize(a->cmat->rmap, rend - rbegin)); 1647a2748737SPierre Jolivet PetscCall(PetscLayoutSetUp(a->cmat->rmap)); 1648a2748737SPierre Jolivet } 1649a2748737SPierre Jolivet if (cend - cbegin != a->cmat->cmap->N) { 16509566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&a->cmat->cmap)); 16519566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &a->cmat->cmap)); 16529566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(a->cmat->cmap, cend - cbegin)); 16539566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(a->cmat->cmap)); 16545ea7661aSPierre Jolivet } 1655a2748737SPierre Jolivet } 1656616b8fbbSStefano Zampini c = (Mat_MPIDense *)a->cmat->data; 16575f80ce2aSJacob Faibussowitsch PetscCheck(!c->A, comm, PETSC_ERR_ORDER, "Need to call MatDenseRestoreSubMatrix() first"); 1658a2748737SPierre Jolivet PetscCall(MatDenseGetSubMatrix(a->A, pbegin, pend, cbegin, cend, &c->A)); 16593faff063SStefano Zampini 1660616b8fbbSStefano Zampini a->cmat->preallocated = PETSC_TRUE; 1661616b8fbbSStefano Zampini a->cmat->assembled = PETSC_TRUE; 16623faff063SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 16633faff063SStefano Zampini a->cmat->offloadmask = c->A->offloadmask; 16643faff063SStefano Zampini #endif 16655ea7661aSPierre Jolivet a->matinuse = cbegin + 1; 16665ea7661aSPierre Jolivet *v = a->cmat; 16673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16685ea7661aSPierre Jolivet } 16695ea7661aSPierre Jolivet 167066976f2fSJacob Faibussowitsch static PetscErrorCode MatDenseRestoreSubMatrix_MPIDense(Mat A, Mat *v) 1671d71ae5a4SJacob Faibussowitsch { 16725ea7661aSPierre Jolivet Mat_MPIDense *a = (Mat_MPIDense *)A->data; 1673616b8fbbSStefano Zampini Mat_MPIDense *c; 16745ea7661aSPierre Jolivet 16755ea7661aSPierre Jolivet PetscFunctionBegin; 16765f80ce2aSJacob Faibussowitsch PetscCheck(a->matinuse, PetscObjectComm((PetscObject)A), PETSC_ERR_ORDER, "Need to call MatDenseGetSubMatrix() first"); 16775f80ce2aSJacob Faibussowitsch PetscCheck(a->cmat, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing internal matrix"); 16785f80ce2aSJacob Faibussowitsch PetscCheck(*v == a->cmat, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Not the matrix obtained from MatDenseGetSubMatrix()"); 16795ea7661aSPierre Jolivet a->matinuse = 0; 1680616b8fbbSStefano Zampini c = (Mat_MPIDense *)a->cmat->data; 16819566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreSubMatrix(a->A, &c->A)); 1682742765d3SMatthew Knepley if (v) *v = NULL; 16833faff063SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 16843faff063SStefano Zampini A->offloadmask = a->A->offloadmask; 16853faff063SStefano Zampini #endif 16863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16875ea7661aSPierre Jolivet } 16885ea7661aSPierre Jolivet 1689002bc6daSRichard Tran Mills /*MC 1690002bc6daSRichard Tran Mills MATMPIDENSE - MATMPIDENSE = "mpidense" - A matrix type to be used for distributed dense matrices. 1691002bc6daSRichard Tran Mills 16922ef1f0ffSBarry Smith Options Database Key: 169311a5261eSBarry Smith . -mat_type mpidense - sets the matrix type to `MATMPIDENSE` during a call to `MatSetFromOptions()` 1694002bc6daSRichard Tran Mills 1695002bc6daSRichard Tran Mills Level: beginner 1696002bc6daSRichard Tran Mills 16971cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateDense()`, `MATSEQDENSE`, `MATDENSE` 1698002bc6daSRichard Tran Mills M*/ 16994742e46bSJacob Faibussowitsch PetscErrorCode MatCreate_MPIDense(Mat mat) 1700d71ae5a4SJacob Faibussowitsch { 1701273d9f13SBarry Smith Mat_MPIDense *a; 1702273d9f13SBarry Smith 1703273d9f13SBarry Smith PetscFunctionBegin; 17044dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&a)); 1705b0a32e0cSBarry Smith mat->data = (void *)a; 1706aea10558SJacob Faibussowitsch mat->ops[0] = MatOps_Values; 1707273d9f13SBarry Smith 1708273d9f13SBarry Smith mat->insertmode = NOT_SET_VALUES; 1709273d9f13SBarry Smith 1710273d9f13SBarry Smith /* build cache for off array entries formed */ 1711273d9f13SBarry Smith a->donotstash = PETSC_FALSE; 17122205254eSKarl Rupp 17139566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)mat), 1, &mat->stash)); 1714273d9f13SBarry Smith 1715273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 1716f4259b30SLisandro Dalcin a->lvec = NULL; 1717f4259b30SLisandro Dalcin a->Mvctx = NULL; 1718273d9f13SBarry Smith a->roworiented = PETSC_TRUE; 1719273d9f13SBarry Smith 17209566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetLDA_C", MatDenseGetLDA_MPIDense)); 17219566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseSetLDA_C", MatDenseSetLDA_MPIDense)); 17229566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetArray_C", MatDenseGetArray_MPIDense)); 17239566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreArray_C", MatDenseRestoreArray_MPIDense)); 17249566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetArrayRead_C", MatDenseGetArrayRead_MPIDense)); 17259566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreArrayRead_C", MatDenseRestoreArrayRead_MPIDense)); 17269566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetArrayWrite_C", MatDenseGetArrayWrite_MPIDense)); 17279566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreArrayWrite_C", MatDenseRestoreArrayWrite_MPIDense)); 17289566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDensePlaceArray_C", MatDensePlaceArray_MPIDense)); 17299566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseResetArray_C", MatDenseResetArray_MPIDense)); 17309566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseReplaceArray_C", MatDenseReplaceArray_MPIDense)); 17319566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVec_C", MatDenseGetColumnVec_MPIDense)); 17329566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVec_C", MatDenseRestoreColumnVec_MPIDense)); 17339566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVecRead_C", MatDenseGetColumnVecRead_MPIDense)); 17349566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVecRead_C", MatDenseRestoreColumnVecRead_MPIDense)); 17359566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumnVecWrite_C", MatDenseGetColumnVecWrite_MPIDense)); 17369566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumnVecWrite_C", MatDenseRestoreColumnVecWrite_MPIDense)); 17379566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetSubMatrix_C", MatDenseGetSubMatrix_MPIDense)); 17389566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreSubMatrix_C", MatDenseRestoreSubMatrix_MPIDense)); 17399566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpiaij_mpidense_C", MatConvert_MPIAIJ_MPIDense)); 17409566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_mpiaij_C", MatConvert_MPIDense_MPIAIJ)); 17418baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 17429566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_elemental_C", MatConvert_MPIDense_Elemental)); 17438baccfbdSHong Zhang #endif 1744d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 17459566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_scalapack_C", MatConvert_Dense_ScaLAPACK)); 1746d24d4204SJose E. Roman #endif 1747637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 17489566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_mpidensecuda_C", MatConvert_MPIDense_MPIDenseCUDA)); 1749637a0070SStefano Zampini #endif 17509566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIDenseSetPreallocation_C", MatMPIDenseSetPreallocation_MPIDense)); 17519566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaij_mpidense_C", MatProductSetFromOptions_MPIAIJ_MPIDense)); 17529566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidense_mpiaij_C", MatProductSetFromOptions_MPIDense_MPIAIJ)); 17536718818eSStefano Zampini #if defined(PETSC_HAVE_CUDA) 17549566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaijcusparse_mpidense_C", MatProductSetFromOptions_MPIAIJ_MPIDense)); 17559566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidense_mpiaijcusparse_C", MatProductSetFromOptions_MPIDense_MPIAIJ)); 17566718818eSStefano Zampini #endif 175747d993e7Ssuyashtn #if defined(PETSC_HAVE_HIP) 175847d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpidense_mpidensehip_C", MatConvert_MPIDense_MPIDenseHIP)); 175947d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpiaijhipsparse_mpidense_C", MatProductSetFromOptions_MPIAIJ_MPIDense)); 176047d993e7Ssuyashtn PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatProductSetFromOptions_mpidense_mpiaijhipsparse_C", MatProductSetFromOptions_MPIDense_MPIAIJ)); 176147d993e7Ssuyashtn #endif 17629566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseGetColumn_C", MatDenseGetColumn_MPIDense)); 17639566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDenseRestoreColumn_C", MatDenseRestoreColumn_MPIDense)); 17640be0d8bdSHansol Suh PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMultAddColumnRange_C", MatMultAddColumnRange_MPIDense)); 17650be0d8bdSHansol Suh PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMultHermitianTransposeColumnRange_C", MatMultHermitianTransposeColumnRange_MPIDense)); 17660be0d8bdSHansol Suh PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMultHermitianTransposeAddColumnRange_C", MatMultHermitianTransposeAddColumnRange_MPIDense)); 17679566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)mat, MATMPIDENSE)); 17683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1769273d9f13SBarry Smith } 1770273d9f13SBarry Smith 1771209238afSKris Buschelman /*MC 1772002d173eSKris Buschelman MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices. 1773209238afSKris Buschelman 177411a5261eSBarry Smith This matrix type is identical to `MATSEQDENSE` when constructed with a single process communicator, 177511a5261eSBarry Smith and `MATMPIDENSE` otherwise. 1776209238afSKris Buschelman 17772ef1f0ffSBarry Smith Options Database Key: 177811a5261eSBarry Smith . -mat_type dense - sets the matrix type to `MATDENSE` during a call to `MatSetFromOptions()` 1779209238afSKris Buschelman 1780209238afSKris Buschelman Level: beginner 1781209238afSKris Buschelman 17821cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATSEQDENSE`, `MATMPIDENSE`, `MATDENSECUDA`, `MATDENSEHIP` 17836947451fSStefano Zampini M*/ 17846947451fSStefano Zampini 17855d83a8b1SBarry Smith /*@ 1786273d9f13SBarry Smith MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries 1787273d9f13SBarry Smith 17888f490ea3SStefano Zampini Collective 1789273d9f13SBarry Smith 1790273d9f13SBarry Smith Input Parameters: 1791fe59aa6dSJacob Faibussowitsch + B - the matrix 17922ef1f0ffSBarry Smith - data - optional location of matrix data. Set to `NULL` for PETSc 1793273d9f13SBarry Smith to control all matrix memory allocation. 1794273d9f13SBarry Smith 17952ef1f0ffSBarry Smith Level: intermediate 17962ef1f0ffSBarry Smith 1797273d9f13SBarry Smith Notes: 17982ef1f0ffSBarry Smith The dense format is fully compatible with standard Fortran 1799273d9f13SBarry Smith storage by columns. 1800273d9f13SBarry Smith 1801273d9f13SBarry Smith The data input variable is intended primarily for Fortran programmers 1802273d9f13SBarry Smith who wish to allocate their own matrix memory space. Most users should 18032ef1f0ffSBarry Smith set `data` to `NULL`. 1804273d9f13SBarry Smith 18051cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATMPIDENSE`, `MatCreate()`, `MatCreateSeqDense()`, `MatSetValues()` 1806273d9f13SBarry Smith @*/ 1807d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIDenseSetPreallocation(Mat B, PetscScalar *data) 1808d71ae5a4SJacob Faibussowitsch { 1809273d9f13SBarry Smith PetscFunctionBegin; 1810d5ea218eSStefano Zampini PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 1811cac4c232SBarry Smith PetscTryMethod(B, "MatMPIDenseSetPreallocation_C", (Mat, PetscScalar *), (B, data)); 18123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1813273d9f13SBarry Smith } 1814273d9f13SBarry Smith 1815d3042a70SBarry Smith /*@ 181611a5261eSBarry Smith MatDensePlaceArray - Allows one to replace the array in a `MATDENSE` matrix with an 1817d3042a70SBarry Smith array provided by the user. This is useful to avoid copying an array 1818d3042a70SBarry Smith into a matrix 1819d3042a70SBarry Smith 1820d3042a70SBarry Smith Not Collective 1821d3042a70SBarry Smith 1822d3042a70SBarry Smith Input Parameters: 1823d3042a70SBarry Smith + mat - the matrix 1824d3042a70SBarry Smith - array - the array in column major order 1825d3042a70SBarry Smith 18262ef1f0ffSBarry Smith Level: developer 18272ef1f0ffSBarry Smith 182811a5261eSBarry Smith Note: 182911a5261eSBarry Smith You can return to the original array with a call to `MatDenseResetArray()`. The user is responsible for freeing this array; it will not be 1830d3042a70SBarry Smith freed when the matrix is destroyed. 1831d3042a70SBarry Smith 18321cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MatDenseGetArray()`, `MatDenseResetArray()`, `VecPlaceArray()`, `VecGetArray()`, `VecRestoreArray()`, `VecReplaceArray()`, `VecResetArray()`, 183311a5261eSBarry Smith `MatDenseReplaceArray()` 1834d3042a70SBarry Smith @*/ 1835d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDensePlaceArray(Mat mat, const PetscScalar *array) 1836d71ae5a4SJacob Faibussowitsch { 1837d3042a70SBarry Smith PetscFunctionBegin; 1838d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 1839cac4c232SBarry Smith PetscUseMethod(mat, "MatDensePlaceArray_C", (Mat, const PetscScalar *), (mat, array)); 18409566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 184147d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) 1842637a0070SStefano Zampini mat->offloadmask = PETSC_OFFLOAD_CPU; 1843637a0070SStefano Zampini #endif 18443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1845d3042a70SBarry Smith } 1846d3042a70SBarry Smith 1847d3042a70SBarry Smith /*@ 184811a5261eSBarry Smith MatDenseResetArray - Resets the matrix array to that it previously had before the call to `MatDensePlaceArray()` 1849d3042a70SBarry Smith 1850d3042a70SBarry Smith Not Collective 1851d3042a70SBarry Smith 18522fe279fdSBarry Smith Input Parameter: 1853d3042a70SBarry Smith . mat - the matrix 1854d3042a70SBarry Smith 18552ef1f0ffSBarry Smith Level: developer 18562ef1f0ffSBarry Smith 185711a5261eSBarry Smith Note: 185811a5261eSBarry Smith You can only call this after a call to `MatDensePlaceArray()` 1859d3042a70SBarry Smith 18601cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MatDenseGetArray()`, `MatDensePlaceArray()`, `VecPlaceArray()`, `VecGetArray()`, `VecRestoreArray()`, `VecReplaceArray()`, `VecResetArray()` 1861d3042a70SBarry Smith @*/ 1862d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseResetArray(Mat mat) 1863d71ae5a4SJacob Faibussowitsch { 1864d3042a70SBarry Smith PetscFunctionBegin; 1865d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 1866cac4c232SBarry Smith PetscUseMethod(mat, "MatDenseResetArray_C", (Mat), (mat)); 18679566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 18683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1869d3042a70SBarry Smith } 1870d3042a70SBarry Smith 1871d5ea218eSStefano Zampini /*@ 1872d5ea218eSStefano Zampini MatDenseReplaceArray - Allows one to replace the array in a dense matrix with an 1873d5ea218eSStefano Zampini array provided by the user. This is useful to avoid copying an array 1874d5ea218eSStefano Zampini into a matrix 1875d5ea218eSStefano Zampini 1876d5ea218eSStefano Zampini Not Collective 1877d5ea218eSStefano Zampini 1878d5ea218eSStefano Zampini Input Parameters: 1879d5ea218eSStefano Zampini + mat - the matrix 1880d5ea218eSStefano Zampini - array - the array in column major order 1881d5ea218eSStefano Zampini 18822ef1f0ffSBarry Smith Level: developer 18832ef1f0ffSBarry Smith 188411a5261eSBarry Smith Note: 188511a5261eSBarry Smith The memory passed in MUST be obtained with `PetscMalloc()` and CANNOT be 1886d5ea218eSStefano Zampini freed by the user. It will be freed when the matrix is destroyed. 1887d5ea218eSStefano Zampini 18881cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatDensePlaceArray()`, `MatDenseGetArray()`, `VecReplaceArray()` 1889d5ea218eSStefano Zampini @*/ 1890d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDenseReplaceArray(Mat mat, const PetscScalar *array) 1891d71ae5a4SJacob Faibussowitsch { 1892d5ea218eSStefano Zampini PetscFunctionBegin; 1893d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat, MAT_CLASSID, 1); 1894cac4c232SBarry Smith PetscUseMethod(mat, "MatDenseReplaceArray_C", (Mat, const PetscScalar *), (mat, array)); 18959566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 189647d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) 1897d5ea218eSStefano Zampini mat->offloadmask = PETSC_OFFLOAD_CPU; 1898d5ea218eSStefano Zampini #endif 18993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1900d5ea218eSStefano Zampini } 1901d5ea218eSStefano Zampini 19025d83a8b1SBarry Smith /*@ 190311a5261eSBarry Smith MatCreateDense - Creates a matrix in `MATDENSE` format. 19048965ea79SLois Curfman McInnes 1905d083f849SBarry Smith Collective 1906db81eaa0SLois Curfman McInnes 19078965ea79SLois Curfman McInnes Input Parameters: 1908db81eaa0SLois Curfman McInnes + comm - MPI communicator 19092ef1f0ffSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if `M` is given) 19102ef1f0ffSBarry Smith . n - number of local columns (or `PETSC_DECIDE` to have calculated if `N` is given) 19112ef1f0ffSBarry Smith . M - number of global rows (or `PETSC_DECIDE` to have calculated if `m` is given) 19122ef1f0ffSBarry Smith . N - number of global columns (or `PETSC_DECIDE` to have calculated if `n` is given) 19132ef1f0ffSBarry Smith - data - optional location of matrix data. Set data to `NULL` (`PETSC_NULL_SCALAR` for Fortran users) for PETSc 1914dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 19158965ea79SLois Curfman McInnes 19168965ea79SLois Curfman McInnes Output Parameter: 1917477f1c0bSLois Curfman McInnes . A - the matrix 19188965ea79SLois Curfman McInnes 19192ef1f0ffSBarry Smith Level: intermediate 19202ef1f0ffSBarry Smith 1921b259b22eSLois Curfman McInnes Notes: 19222ef1f0ffSBarry Smith The dense format is fully compatible with standard Fortran 192339ddd567SLois Curfman McInnes storage by columns. 192411a5261eSBarry Smith 192511a5261eSBarry Smith Although local portions of the matrix are stored in column-major 1926002bc6daSRichard Tran Mills order, the matrix is partitioned across MPI ranks by row. 19278965ea79SLois Curfman McInnes 192818f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 192918f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 19302ef1f0ffSBarry Smith set `data` to `NULL` (`PETSC_NULL_SCALAR` for Fortran users). 193118f449edSLois Curfman McInnes 19328965ea79SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 19338965ea79SLois Curfman McInnes (possibly both). 19348965ea79SLois Curfman McInnes 19351cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MATDENSE`, `MatCreate()`, `MatCreateSeqDense()`, `MatSetValues()` 19368965ea79SLois Curfman McInnes @*/ 1937d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateDense(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscScalar *data, Mat *A) 1938d71ae5a4SJacob Faibussowitsch { 19393a40ed3dSBarry Smith PetscFunctionBegin; 19409566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 19419566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 19426f08ad05SPierre Jolivet PetscCall(MatSetType(*A, MATDENSE)); 19439566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(*A, data)); 19446f08ad05SPierre Jolivet PetscCall(MatMPIDenseSetPreallocation(*A, data)); 19453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 19468965ea79SLois Curfman McInnes } 19478965ea79SLois Curfman McInnes 1948d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDuplicate_MPIDense(Mat A, MatDuplicateOption cpvalues, Mat *newmat) 1949d71ae5a4SJacob Faibussowitsch { 19508965ea79SLois Curfman McInnes Mat mat; 19513501a2bdSLois Curfman McInnes Mat_MPIDense *a, *oldmat = (Mat_MPIDense *)A->data; 19528965ea79SLois Curfman McInnes 19533a40ed3dSBarry Smith PetscFunctionBegin; 1954f4259b30SLisandro Dalcin *newmat = NULL; 19559566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &mat)); 19569566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N)); 19579566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)A)->type_name)); 1958834f8fabSBarry Smith a = (Mat_MPIDense *)mat->data; 19595aa7edbeSHong Zhang 1960d5f3da31SBarry Smith mat->factortype = A->factortype; 1961c456f294SBarry Smith mat->assembled = PETSC_TRUE; 1962273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 19638965ea79SLois Curfman McInnes 1964e0fa3b82SLois Curfman McInnes mat->insertmode = NOT_SET_VALUES; 19653782ba37SSatish Balay a->donotstash = oldmat->donotstash; 1966e04c1aa4SHong Zhang 19679566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->rmap, &mat->rmap)); 19689566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->cmap, &mat->cmap)); 19698965ea79SLois Curfman McInnes 19709566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 197101b82886SBarry Smith 19728965ea79SLois Curfman McInnes *newmat = mat; 19733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 19748965ea79SLois Curfman McInnes } 19758965ea79SLois Curfman McInnes 197666976f2fSJacob Faibussowitsch static PetscErrorCode MatLoad_MPIDense(Mat newMat, PetscViewer viewer) 1977d71ae5a4SJacob Faibussowitsch { 197887d5ce66SSatish Balay PetscBool isbinary; 197987d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 198087d5ce66SSatish Balay PetscBool ishdf5; 198187d5ce66SSatish Balay #endif 1982eb91f321SVaclav Hapla 1983eb91f321SVaclav Hapla PetscFunctionBegin; 1984eb91f321SVaclav Hapla PetscValidHeaderSpecific(newMat, MAT_CLASSID, 1); 1985eb91f321SVaclav Hapla PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 1986eb91f321SVaclav Hapla /* force binary viewer to load .info file if it has not yet done so */ 19879566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 19889566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 198987d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 19909566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERHDF5, &ishdf5)); 199187d5ce66SSatish Balay #endif 1992eb91f321SVaclav Hapla if (isbinary) { 19939566063dSJacob Faibussowitsch PetscCall(MatLoad_Dense_Binary(newMat, viewer)); 1994eb91f321SVaclav Hapla #if defined(PETSC_HAVE_HDF5) 199587d5ce66SSatish Balay } else if (ishdf5) { 19969566063dSJacob Faibussowitsch PetscCall(MatLoad_Dense_HDF5(newMat, viewer)); 1997eb91f321SVaclav Hapla #endif 199898921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)newMat), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)newMat)->type_name); 19993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2000eb91f321SVaclav Hapla } 2001eb91f321SVaclav Hapla 2002d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatEqual_MPIDense(Mat A, Mat B, PetscBool *flag) 2003d71ae5a4SJacob Faibussowitsch { 20046e4ee0c6SHong Zhang Mat_MPIDense *matB = (Mat_MPIDense *)B->data, *matA = (Mat_MPIDense *)A->data; 20056e4ee0c6SHong Zhang Mat a, b; 200690ace30eSBarry Smith 20076e4ee0c6SHong Zhang PetscFunctionBegin; 20086e4ee0c6SHong Zhang a = matA->A; 20096e4ee0c6SHong Zhang b = matB->A; 20102cf15c64SPierre Jolivet PetscCall(MatEqual(a, b, flag)); 2011462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 20123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 20136e4ee0c6SHong Zhang } 201490ace30eSBarry Smith 201566976f2fSJacob Faibussowitsch static PetscErrorCode MatDestroy_MatTransMatMult_MPIDense_MPIDense(void *data) 2016d71ae5a4SJacob Faibussowitsch { 20176718818eSStefano Zampini Mat_TransMatMultDense *atb = (Mat_TransMatMultDense *)data; 2018baa3c1c6SHong Zhang 2019baa3c1c6SHong Zhang PetscFunctionBegin; 20209566063dSJacob Faibussowitsch PetscCall(PetscFree2(atb->sendbuf, atb->recvcounts)); 20219566063dSJacob Faibussowitsch PetscCall(MatDestroy(&atb->atb)); 20229566063dSJacob Faibussowitsch PetscCall(PetscFree(atb)); 20233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2024baa3c1c6SHong Zhang } 2025baa3c1c6SHong Zhang 202666976f2fSJacob Faibussowitsch static PetscErrorCode MatDestroy_MatMatTransMult_MPIDense_MPIDense(void *data) 2027d71ae5a4SJacob Faibussowitsch { 20286718818eSStefano Zampini Mat_MatTransMultDense *abt = (Mat_MatTransMultDense *)data; 2029cc48ffa7SToby Isaac 2030cc48ffa7SToby Isaac PetscFunctionBegin; 20319566063dSJacob Faibussowitsch PetscCall(PetscFree2(abt->buf[0], abt->buf[1])); 20329566063dSJacob Faibussowitsch PetscCall(PetscFree2(abt->recvcounts, abt->recvdispls)); 20339566063dSJacob Faibussowitsch PetscCall(PetscFree(abt)); 20343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2035cc48ffa7SToby Isaac } 2036cc48ffa7SToby Isaac 2037d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat A, Mat B, Mat C) 2038d71ae5a4SJacob Faibussowitsch { 2039baa3c1c6SHong Zhang Mat_MPIDense *a = (Mat_MPIDense *)A->data, *b = (Mat_MPIDense *)B->data, *c = (Mat_MPIDense *)C->data; 20406718818eSStefano Zampini Mat_TransMatMultDense *atb; 2041cb20be35SHong Zhang MPI_Comm comm; 20426718818eSStefano Zampini PetscMPIInt size, *recvcounts; 20436718818eSStefano Zampini PetscScalar *carray, *sendbuf; 2044637a0070SStefano Zampini const PetscScalar *atbarray; 2045a1f9a5e6SStefano Zampini PetscInt i, cN = C->cmap->N, proc, k, j, lda; 2046e68c0b26SHong Zhang const PetscInt *ranges; 2047cb20be35SHong Zhang 2048cb20be35SHong Zhang PetscFunctionBegin; 20496718818eSStefano Zampini MatCheckProduct(C, 3); 20505f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 20516718818eSStefano Zampini atb = (Mat_TransMatMultDense *)C->product->data; 20526718818eSStefano Zampini recvcounts = atb->recvcounts; 20536718818eSStefano Zampini sendbuf = atb->sendbuf; 20546718818eSStefano Zampini 20559566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 20569566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 2057e68c0b26SHong Zhang 2058c5ef1628SHong Zhang /* compute atbarray = aseq^T * bseq */ 2059fb842aefSJose E. Roman PetscCall(MatTransposeMatMult(a->A, b->A, atb->atb ? MAT_REUSE_MATRIX : MAT_INITIAL_MATRIX, PETSC_DETERMINE, &atb->atb)); 2060cb20be35SHong Zhang 20619566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRanges(C, &ranges)); 2062cb20be35SHong Zhang 2063660d5466SHong Zhang /* arrange atbarray into sendbuf */ 20649566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(atb->atb, &atbarray)); 20659566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(atb->atb, &lda)); 2066637a0070SStefano Zampini for (proc = 0, k = 0; proc < size; proc++) { 2067baa3c1c6SHong Zhang for (j = 0; j < cN; j++) { 2068a1f9a5e6SStefano Zampini for (i = ranges[proc]; i < ranges[proc + 1]; i++) sendbuf[k++] = atbarray[i + j * lda]; 2069cb20be35SHong Zhang } 2070cb20be35SHong Zhang } 20719566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(atb->atb, &atbarray)); 2072637a0070SStefano Zampini 2073c5ef1628SHong Zhang /* sum all atbarray to local values of C */ 20749566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(c->A, &carray)); 20759566063dSJacob Faibussowitsch PetscCallMPI(MPI_Reduce_scatter(sendbuf, carray, recvcounts, MPIU_SCALAR, MPIU_SUM, comm)); 20769566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(c->A, &carray)); 207767af85e8SPierre Jolivet PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 20789566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 20799566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 20803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2081cb20be35SHong Zhang } 2082cb20be35SHong Zhang 2083d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat A, Mat B, PetscReal fill, Mat C) 2084d71ae5a4SJacob Faibussowitsch { 2085cb20be35SHong Zhang MPI_Comm comm; 2086baa3c1c6SHong Zhang PetscMPIInt size; 2087660d5466SHong Zhang PetscInt cm = A->cmap->n, cM, cN = B->cmap->N; 2088baa3c1c6SHong Zhang Mat_TransMatMultDense *atb; 208947d993e7Ssuyashtn PetscBool cisdense = PETSC_FALSE; 20900acaeb71SStefano Zampini const PetscInt *ranges; 2091cb20be35SHong Zhang 2092cb20be35SHong Zhang PetscFunctionBegin; 20938f83a4d9SJacob Faibussowitsch MatCheckProduct(C, 4); 20945f80ce2aSJacob Faibussowitsch PetscCheck(!C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty"); 20959566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 2096cb20be35SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) { 209798921bdaSJacob Faibussowitsch SETERRQ(comm, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != B (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->rstart, A->rmap->rend, B->rmap->rstart, B->rmap->rend); 2098cb20be35SHong Zhang } 2099cb20be35SHong Zhang 21004222ddf1SHong Zhang /* create matrix product C */ 21019566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, cm, B->cmap->n, A->cmap->N, B->cmap->N)); 210247d993e7Ssuyashtn #if defined(PETSC_HAVE_CUDA) 21039566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATMPIDENSE, MATMPIDENSECUDA, "")); 210447d993e7Ssuyashtn #endif 210547d993e7Ssuyashtn #if defined(PETSC_HAVE_HIP) 210647d993e7Ssuyashtn PetscCall(PetscObjectTypeCompareAny((PetscObject)C, &cisdense, MATMPIDENSE, MATMPIDENSEHIP, "")); 210747d993e7Ssuyashtn #endif 210848a46eb9SPierre Jolivet if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)A)->type_name)); 21099566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 2110baa3c1c6SHong Zhang 21114222ddf1SHong Zhang /* create data structure for reuse C */ 21129566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 21139566063dSJacob Faibussowitsch PetscCall(PetscNew(&atb)); 21144222ddf1SHong Zhang cM = C->rmap->N; 21159566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(cM * cN, &atb->sendbuf, size, &atb->recvcounts)); 21169566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRanges(C, &ranges)); 21176497c311SBarry Smith for (PetscMPIInt i = 0; i < size; i++) PetscCall(PetscMPIIntCast((ranges[i + 1] - ranges[i]) * cN, &atb->recvcounts[i])); 21186718818eSStefano Zampini C->product->data = atb; 21196718818eSStefano Zampini C->product->destroy = MatDestroy_MatTransMatMult_MPIDense_MPIDense; 21203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2121cb20be35SHong Zhang } 2122cb20be35SHong Zhang 2123d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat A, Mat B, PetscReal fill, Mat C) 2124d71ae5a4SJacob Faibussowitsch { 2125cc48ffa7SToby Isaac MPI_Comm comm; 2126cc48ffa7SToby Isaac PetscMPIInt i, size; 2127cc48ffa7SToby Isaac PetscInt maxRows, bufsiz; 2128cc48ffa7SToby Isaac PetscMPIInt tag; 21294222ddf1SHong Zhang PetscInt alg; 2130cc48ffa7SToby Isaac Mat_MatTransMultDense *abt; 21314222ddf1SHong Zhang Mat_Product *product = C->product; 21324222ddf1SHong Zhang PetscBool flg; 2133cc48ffa7SToby Isaac 2134cc48ffa7SToby Isaac PetscFunctionBegin; 21356718818eSStefano Zampini MatCheckProduct(C, 4); 21365f80ce2aSJacob Faibussowitsch PetscCheck(!C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty"); 21374222ddf1SHong Zhang /* check local size of A and B */ 21385f80ce2aSJacob Faibussowitsch PetscCheck(A->cmap->n == B->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local column dimensions are incompatible, A (%" PetscInt_FMT ") != B (%" PetscInt_FMT ")", A->cmap->n, B->cmap->n); 2139cc48ffa7SToby Isaac 21409566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg, "allgatherv", &flg)); 2141637a0070SStefano Zampini alg = flg ? 0 : 1; 2142cc48ffa7SToby Isaac 21434222ddf1SHong Zhang /* setup matrix product C */ 21449566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, A->rmap->n, B->rmap->n, A->rmap->N, B->rmap->N)); 21459566063dSJacob Faibussowitsch PetscCall(MatSetType(C, MATMPIDENSE)); 21469566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 21479566063dSJacob Faibussowitsch PetscCall(PetscObjectGetNewTag((PetscObject)C, &tag)); 21484222ddf1SHong Zhang 21494222ddf1SHong Zhang /* create data structure for reuse C */ 21509566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C, &comm)); 21519566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 21529566063dSJacob Faibussowitsch PetscCall(PetscNew(&abt)); 2153cc48ffa7SToby Isaac abt->tag = tag; 2154faa55883SToby Isaac abt->alg = alg; 2155faa55883SToby Isaac switch (alg) { 21564222ddf1SHong Zhang case 1: /* alg: "cyclic" */ 215757508eceSPierre Jolivet for (maxRows = 0, i = 0; i < size; i++) maxRows = PetscMax(maxRows, B->rmap->range[i + 1] - B->rmap->range[i]); 2158cc48ffa7SToby Isaac bufsiz = A->cmap->N * maxRows; 2159f4f49eeaSPierre Jolivet PetscCall(PetscMalloc2(bufsiz, &abt->buf[0], bufsiz, &abt->buf[1])); 2160faa55883SToby Isaac break; 21614222ddf1SHong Zhang default: /* alg: "allgatherv" */ 2162f4f49eeaSPierre Jolivet PetscCall(PetscMalloc2(B->rmap->n * B->cmap->N, &abt->buf[0], B->rmap->N * B->cmap->N, &abt->buf[1])); 2163f4f49eeaSPierre Jolivet PetscCall(PetscMalloc2(size, &abt->recvcounts, size + 1, &abt->recvdispls)); 21646497c311SBarry Smith for (i = 0; i <= size; i++) PetscCall(PetscMPIIntCast(B->rmap->range[i] * A->cmap->N, &abt->recvdispls[i])); 21656497c311SBarry Smith for (i = 0; i < size; i++) PetscCall(PetscMPIIntCast(abt->recvdispls[i + 1] - abt->recvdispls[i], &abt->recvcounts[i])); 2166faa55883SToby Isaac break; 2167faa55883SToby Isaac } 2168cc48ffa7SToby Isaac 21696718818eSStefano Zampini C->product->data = abt; 21706718818eSStefano Zampini C->product->destroy = MatDestroy_MatMatTransMult_MPIDense_MPIDense; 21714222ddf1SHong Zhang C->ops->mattransposemultnumeric = MatMatTransposeMultNumeric_MPIDense_MPIDense; 21723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2173cc48ffa7SToby Isaac } 2174cc48ffa7SToby Isaac 2175d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(Mat A, Mat B, Mat C) 2176d71ae5a4SJacob Faibussowitsch { 2177cc48ffa7SToby Isaac Mat_MPIDense *a = (Mat_MPIDense *)A->data, *b = (Mat_MPIDense *)B->data, *c = (Mat_MPIDense *)C->data; 21786718818eSStefano Zampini Mat_MatTransMultDense *abt; 2179cc48ffa7SToby Isaac MPI_Comm comm; 21806497c311SBarry Smith PetscMPIInt rank, size, sendto, recvfrom, recvisfrom; 2181f4259b30SLisandro Dalcin PetscScalar *sendbuf, *recvbuf = NULL, *cv; 21826497c311SBarry Smith PetscInt i, cK = A->cmap->N, sendsiz, recvsiz, k, j, bn; 2183cc48ffa7SToby Isaac PetscScalar _DOne = 1.0, _DZero = 0.0; 2184637a0070SStefano Zampini const PetscScalar *av, *bv; 218523fff9afSBarry Smith PetscBLASInt cm, cn, ck, alda, blda = 0, clda; 2186cc48ffa7SToby Isaac MPI_Request reqs[2]; 2187cc48ffa7SToby Isaac const PetscInt *ranges; 2188cc48ffa7SToby Isaac 2189cc48ffa7SToby Isaac PetscFunctionBegin; 21906718818eSStefano Zampini MatCheckProduct(C, 3); 21915f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 21926718818eSStefano Zampini abt = (Mat_MatTransMultDense *)C->product->data; 21939566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C, &comm)); 21949566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 21959566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 21969566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A, &av)); 21979566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(b->A, &bv)); 21989566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(c->A, &cv)); 21999566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &i)); 22009566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i, &alda)); 22019566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(b->A, &i)); 22029566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i, &blda)); 22039566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(c->A, &i)); 22049566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i, &clda)); 22059566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRanges(B, &ranges)); 2206cc48ffa7SToby Isaac bn = B->rmap->n; 2207637a0070SStefano Zampini if (blda == bn) { 2208637a0070SStefano Zampini sendbuf = (PetscScalar *)bv; 2209cc48ffa7SToby Isaac } else { 2210cc48ffa7SToby Isaac sendbuf = abt->buf[0]; 2211cc48ffa7SToby Isaac for (k = 0, i = 0; i < cK; i++) { 2212ad540459SPierre Jolivet for (j = 0; j < bn; j++, k++) sendbuf[k] = bv[i * blda + j]; 2213cc48ffa7SToby Isaac } 2214cc48ffa7SToby Isaac } 2215cc48ffa7SToby Isaac if (size > 1) { 2216cc48ffa7SToby Isaac sendto = (rank + size - 1) % size; 2217cc48ffa7SToby Isaac recvfrom = (rank + size + 1) % size; 2218cc48ffa7SToby Isaac } else { 2219cc48ffa7SToby Isaac sendto = recvfrom = 0; 2220cc48ffa7SToby Isaac } 22219566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(cK, &ck)); 22229566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(c->A->rmap->n, &cm)); 2223cc48ffa7SToby Isaac recvisfrom = rank; 2224cc48ffa7SToby Isaac for (i = 0; i < size; i++) { 2225cc48ffa7SToby Isaac /* we have finished receiving in sending, bufs can be read/modified */ 22266497c311SBarry Smith PetscMPIInt nextrecvisfrom = (recvisfrom + 1) % size; /* which process the next recvbuf will originate on */ 2227cc48ffa7SToby Isaac PetscInt nextbn = ranges[nextrecvisfrom + 1] - ranges[nextrecvisfrom]; 2228cc48ffa7SToby Isaac 2229cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2230cc48ffa7SToby Isaac /* start the cyclic sends from sendbuf, to recvbuf (which will switch to sendbuf) */ 2231cc48ffa7SToby Isaac sendsiz = cK * bn; 2232cc48ffa7SToby Isaac recvsiz = cK * nextbn; 2233cc48ffa7SToby Isaac recvbuf = (i & 1) ? abt->buf[0] : abt->buf[1]; 22346497c311SBarry Smith PetscCallMPI(MPIU_Isend(sendbuf, sendsiz, MPIU_SCALAR, sendto, abt->tag, comm, &reqs[0])); 22356497c311SBarry Smith PetscCallMPI(MPIU_Irecv(recvbuf, recvsiz, MPIU_SCALAR, recvfrom, abt->tag, comm, &reqs[1])); 2236cc48ffa7SToby Isaac } 2237cc48ffa7SToby Isaac 2238cc48ffa7SToby Isaac /* local aseq * sendbuf^T */ 22399566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(ranges[recvisfrom + 1] - ranges[recvisfrom], &cn)); 2240792fecdfSBarry Smith if (cm && cn && ck) PetscCallBLAS("BLASgemm", BLASgemm_("N", "T", &cm, &cn, &ck, &_DOne, av, &alda, sendbuf, &cn, &_DZero, cv + clda * ranges[recvisfrom], &clda)); 2241cc48ffa7SToby Isaac 2242cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2243cc48ffa7SToby Isaac /* wait for the sends and receives to complete, swap sendbuf and recvbuf */ 22449566063dSJacob Faibussowitsch PetscCallMPI(MPI_Waitall(2, reqs, MPI_STATUSES_IGNORE)); 2245cc48ffa7SToby Isaac } 2246cc48ffa7SToby Isaac bn = nextbn; 2247cc48ffa7SToby Isaac recvisfrom = nextrecvisfrom; 2248cc48ffa7SToby Isaac sendbuf = recvbuf; 2249cc48ffa7SToby Isaac } 22509566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A, &av)); 22519566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(b->A, &bv)); 22529566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(c->A, &cv)); 225367af85e8SPierre Jolivet PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 22549566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 22559566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 22563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2257cc48ffa7SToby Isaac } 2258cc48ffa7SToby Isaac 2259d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(Mat A, Mat B, Mat C) 2260d71ae5a4SJacob Faibussowitsch { 2261faa55883SToby Isaac Mat_MPIDense *a = (Mat_MPIDense *)A->data, *b = (Mat_MPIDense *)B->data, *c = (Mat_MPIDense *)C->data; 22626718818eSStefano Zampini Mat_MatTransMultDense *abt; 2263faa55883SToby Isaac MPI_Comm comm; 22646497c311SBarry Smith PetscMPIInt size, ibn; 2265637a0070SStefano Zampini PetscScalar *cv, *sendbuf, *recvbuf; 2266637a0070SStefano Zampini const PetscScalar *av, *bv; 2267637a0070SStefano Zampini PetscInt blda, i, cK = A->cmap->N, k, j, bn; 2268faa55883SToby Isaac PetscScalar _DOne = 1.0, _DZero = 0.0; 2269637a0070SStefano Zampini PetscBLASInt cm, cn, ck, alda, clda; 2270faa55883SToby Isaac 2271faa55883SToby Isaac PetscFunctionBegin; 22726718818eSStefano Zampini MatCheckProduct(C, 3); 22735f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 22746718818eSStefano Zampini abt = (Mat_MatTransMultDense *)C->product->data; 22759566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 22769566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 22779566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A, &av)); 22789566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(b->A, &bv)); 22799566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(c->A, &cv)); 22809566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A, &i)); 22819566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i, &alda)); 22829566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(b->A, &blda)); 22839566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(c->A, &i)); 22849566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i, &clda)); 2285faa55883SToby Isaac /* copy transpose of B into buf[0] */ 2286faa55883SToby Isaac bn = B->rmap->n; 2287faa55883SToby Isaac sendbuf = abt->buf[0]; 2288faa55883SToby Isaac recvbuf = abt->buf[1]; 2289faa55883SToby Isaac for (k = 0, j = 0; j < bn; j++) { 2290ad540459SPierre Jolivet for (i = 0; i < cK; i++, k++) sendbuf[k] = bv[i * blda + j]; 2291faa55883SToby Isaac } 22929566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(b->A, &bv)); 22936497c311SBarry Smith PetscCall(PetscMPIIntCast(bn * cK, &ibn)); 22946497c311SBarry Smith PetscCallMPI(MPI_Allgatherv(sendbuf, ibn, MPIU_SCALAR, recvbuf, abt->recvcounts, abt->recvdispls, MPIU_SCALAR, comm)); 22959566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(cK, &ck)); 22969566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(c->A->rmap->n, &cm)); 22979566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(c->A->cmap->n, &cn)); 2298792fecdfSBarry Smith if (cm && cn && ck) PetscCallBLAS("BLASgemm", BLASgemm_("N", "N", &cm, &cn, &ck, &_DOne, av, &alda, recvbuf, &ck, &_DZero, cv, &clda)); 22999566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A, &av)); 23009566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(b->A, &bv)); 23019566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(c->A, &cv)); 230267af85e8SPierre Jolivet PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 23039566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 23049566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 23053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2306faa55883SToby Isaac } 2307faa55883SToby Isaac 2308d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat A, Mat B, Mat C) 2309d71ae5a4SJacob Faibussowitsch { 23106718818eSStefano Zampini Mat_MatTransMultDense *abt; 2311faa55883SToby Isaac 2312faa55883SToby Isaac PetscFunctionBegin; 23136718818eSStefano Zampini MatCheckProduct(C, 3); 23145f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 23156718818eSStefano Zampini abt = (Mat_MatTransMultDense *)C->product->data; 2316faa55883SToby Isaac switch (abt->alg) { 2317d71ae5a4SJacob Faibussowitsch case 1: 2318d71ae5a4SJacob Faibussowitsch PetscCall(MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(A, B, C)); 2319d71ae5a4SJacob Faibussowitsch break; 2320d71ae5a4SJacob Faibussowitsch default: 2321d71ae5a4SJacob Faibussowitsch PetscCall(MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(A, B, C)); 2322d71ae5a4SJacob Faibussowitsch break; 2323faa55883SToby Isaac } 23243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2325faa55883SToby Isaac } 2326faa55883SToby Isaac 232766976f2fSJacob Faibussowitsch static PetscErrorCode MatDestroy_MatMatMult_MPIDense_MPIDense(void *data) 2328d71ae5a4SJacob Faibussowitsch { 23296718818eSStefano Zampini Mat_MatMultDense *ab = (Mat_MatMultDense *)data; 2330320f2790SHong Zhang 2331320f2790SHong Zhang PetscFunctionBegin; 23329566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ab->Ce)); 23339566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ab->Ae)); 23349566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ab->Be)); 23359566063dSJacob Faibussowitsch PetscCall(PetscFree(ab)); 23363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2337320f2790SHong Zhang } 2338320f2790SHong Zhang 23395d8c7819SPierre Jolivet static PetscErrorCode MatMatMultNumeric_MPIDense_MPIDense(Mat A, Mat B, Mat C) 2340d71ae5a4SJacob Faibussowitsch { 23416718818eSStefano Zampini Mat_MatMultDense *ab; 23425d8c7819SPierre Jolivet Mat_MPIDense *mdn = (Mat_MPIDense *)A->data; 2343320f2790SHong Zhang 2344320f2790SHong Zhang PetscFunctionBegin; 23456718818eSStefano Zampini MatCheckProduct(C, 3); 23465f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Missing product data"); 23476718818eSStefano Zampini ab = (Mat_MatMultDense *)C->product->data; 23485d8c7819SPierre Jolivet if (ab->Ae && ab->Ce) { 23495d8c7819SPierre Jolivet #if PetscDefined(HAVE_ELEMENTAL) 23509566063dSJacob Faibussowitsch PetscCall(MatConvert_MPIDense_Elemental(A, MATELEMENTAL, MAT_REUSE_MATRIX, &ab->Ae)); 23519566063dSJacob Faibussowitsch PetscCall(MatConvert_MPIDense_Elemental(B, MATELEMENTAL, MAT_REUSE_MATRIX, &ab->Be)); 23529566063dSJacob Faibussowitsch PetscCall(MatMatMultNumeric_Elemental(ab->Ae, ab->Be, ab->Ce)); 23539566063dSJacob Faibussowitsch PetscCall(MatConvert(ab->Ce, MATMPIDENSE, MAT_REUSE_MATRIX, &C)); 23545d8c7819SPierre Jolivet #else 23555d8c7819SPierre Jolivet SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "PETSC_HAVE_ELEMENTAL not defined"); 23565d8c7819SPierre Jolivet #endif 23575d8c7819SPierre Jolivet } else { 23585d8c7819SPierre Jolivet const PetscScalar *read; 23595d8c7819SPierre Jolivet PetscScalar *write; 23605d8c7819SPierre Jolivet PetscInt lda; 23615d8c7819SPierre Jolivet 23625d8c7819SPierre Jolivet PetscCall(MatDenseGetLDA(B, &lda)); 23635d8c7819SPierre Jolivet PetscCall(MatDenseGetArrayRead(B, &read)); 23645d8c7819SPierre Jolivet PetscCall(MatDenseGetArrayWrite(ab->Be, &write)); 23655d8c7819SPierre Jolivet if (!mdn->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); /* cannot be done during the symbolic phase because of possible calls to MatProductReplaceMats() */ 23665d8c7819SPierre Jolivet for (PetscInt i = 0; i < C->cmap->N; ++i) { 23675d8c7819SPierre Jolivet PetscCall(PetscSFBcastBegin(mdn->Mvctx, MPIU_SCALAR, read + i * lda, write + i * ab->Be->rmap->n, MPI_REPLACE)); 23685d8c7819SPierre Jolivet PetscCall(PetscSFBcastEnd(mdn->Mvctx, MPIU_SCALAR, read + i * lda, write + i * ab->Be->rmap->n, MPI_REPLACE)); 23695d8c7819SPierre Jolivet } 23705d8c7819SPierre Jolivet PetscCall(MatDenseRestoreArrayWrite(ab->Be, &write)); 23715d8c7819SPierre Jolivet PetscCall(MatDenseRestoreArrayRead(B, &read)); 2372f4f49eeaSPierre Jolivet PetscCall(MatMatMultNumeric_SeqDense_SeqDense(((Mat_MPIDense *)A->data)->A, ab->Be, ((Mat_MPIDense *)C->data)->A)); 23735d8c7819SPierre Jolivet } 23743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2375320f2790SHong Zhang } 2376320f2790SHong Zhang 2377d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIDense(Mat A, Mat B, PetscReal fill, Mat C) 2378d71ae5a4SJacob Faibussowitsch { 23795d8c7819SPierre Jolivet Mat_Product *product = C->product; 23805d8c7819SPierre Jolivet PetscInt alg; 2381320f2790SHong Zhang Mat_MatMultDense *ab; 23825d8c7819SPierre Jolivet PetscBool flg; 2383320f2790SHong Zhang 2384320f2790SHong Zhang PetscFunctionBegin; 23856718818eSStefano Zampini MatCheckProduct(C, 4); 23865f80ce2aSJacob Faibussowitsch PetscCheck(!C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty"); 23874222ddf1SHong Zhang /* check local size of A and B */ 23885d8c7819SPierre Jolivet PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != B (%" PetscInt_FMT ", %" PetscInt_FMT ")", 23895d8c7819SPierre Jolivet A->rmap->rstart, A->rmap->rend, B->rmap->rstart, B->rmap->rend); 2390320f2790SHong Zhang 23915d8c7819SPierre Jolivet PetscCall(PetscStrcmp(product->alg, "petsc", &flg)); 23925d8c7819SPierre Jolivet alg = flg ? 0 : 1; 23934222ddf1SHong Zhang 23944222ddf1SHong Zhang /* setup C */ 23955d8c7819SPierre Jolivet PetscCall(MatSetSizes(C, A->rmap->n, B->cmap->n, A->rmap->N, B->cmap->N)); 23965d8c7819SPierre Jolivet PetscCall(MatSetType(C, MATMPIDENSE)); 23979566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 2398320f2790SHong Zhang 2399320f2790SHong Zhang /* create data structure for reuse Cdense */ 24009566063dSJacob Faibussowitsch PetscCall(PetscNew(&ab)); 24015d8c7819SPierre Jolivet 24025d8c7819SPierre Jolivet switch (alg) { 24035d8c7819SPierre Jolivet case 1: /* alg: "elemental" */ 24045d8c7819SPierre Jolivet #if PetscDefined(HAVE_ELEMENTAL) 24055d8c7819SPierre Jolivet /* create elemental matrices Ae and Be */ 24065d8c7819SPierre Jolivet PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &ab->Ae)); 24075d8c7819SPierre Jolivet PetscCall(MatSetSizes(ab->Ae, PETSC_DECIDE, PETSC_DECIDE, A->rmap->N, A->cmap->N)); 24085d8c7819SPierre Jolivet PetscCall(MatSetType(ab->Ae, MATELEMENTAL)); 24095d8c7819SPierre Jolivet PetscCall(MatSetUp(ab->Ae)); 24105d8c7819SPierre Jolivet PetscCall(MatSetOption(ab->Ae, MAT_ROW_ORIENTED, PETSC_FALSE)); 24115d8c7819SPierre Jolivet 24125d8c7819SPierre Jolivet PetscCall(MatCreate(PetscObjectComm((PetscObject)B), &ab->Be)); 24135d8c7819SPierre Jolivet PetscCall(MatSetSizes(ab->Be, PETSC_DECIDE, PETSC_DECIDE, B->rmap->N, B->cmap->N)); 24145d8c7819SPierre Jolivet PetscCall(MatSetType(ab->Be, MATELEMENTAL)); 24155d8c7819SPierre Jolivet PetscCall(MatSetUp(ab->Be)); 24165d8c7819SPierre Jolivet PetscCall(MatSetOption(ab->Be, MAT_ROW_ORIENTED, PETSC_FALSE)); 24175d8c7819SPierre Jolivet 24185d8c7819SPierre Jolivet /* compute symbolic Ce = Ae*Be */ 24195d8c7819SPierre Jolivet PetscCall(MatCreate(PetscObjectComm((PetscObject)C), &ab->Ce)); 24205d8c7819SPierre Jolivet PetscCall(MatMatMultSymbolic_Elemental(ab->Ae, ab->Be, fill, ab->Ce)); 24215d8c7819SPierre Jolivet #else 24225d8c7819SPierre Jolivet SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "PETSC_HAVE_ELEMENTAL not defined"); 24235d8c7819SPierre Jolivet #endif 24245d8c7819SPierre Jolivet break; 24255d8c7819SPierre Jolivet default: /* alg: "petsc" */ 24265d8c7819SPierre Jolivet ab->Ae = NULL; 24275d8c7819SPierre Jolivet PetscCall(MatCreateSeqDense(PETSC_COMM_SELF, A->cmap->N, B->cmap->N, NULL, &ab->Be)); 24285d8c7819SPierre Jolivet ab->Ce = NULL; 24295d8c7819SPierre Jolivet break; 24305d8c7819SPierre Jolivet } 24316718818eSStefano Zampini 24326718818eSStefano Zampini C->product->data = ab; 24336718818eSStefano Zampini C->product->destroy = MatDestroy_MatMatMult_MPIDense_MPIDense; 24344222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIDense; 24353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2436320f2790SHong Zhang } 24372ef1f0ffSBarry Smith 2438d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_AB(Mat C) 2439d71ae5a4SJacob Faibussowitsch { 24405d8c7819SPierre Jolivet Mat_Product *product = C->product; 24415d8c7819SPierre Jolivet const char *algTypes[2] = {"petsc", "elemental"}; 24425d8c7819SPierre Jolivet PetscInt alg, nalg = PetscDefined(HAVE_ELEMENTAL) ? 2 : 1; 24435d8c7819SPierre Jolivet PetscBool flg = PETSC_FALSE; 24445d8c7819SPierre Jolivet 24454d86920dSPierre Jolivet PetscFunctionBegin; 24465d8c7819SPierre Jolivet /* Set default algorithm */ 24475d8c7819SPierre Jolivet alg = 0; /* default is petsc */ 24485d8c7819SPierre Jolivet PetscCall(PetscStrcmp(product->alg, "default", &flg)); 2449835f2295SStefano Zampini if (flg) PetscCall(MatProductSetAlgorithm(C, algTypes[alg])); 24505d8c7819SPierre Jolivet 24515d8c7819SPierre Jolivet /* Get runtime option */ 24525d8c7819SPierre Jolivet PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AB", "Mat"); 24535d8c7819SPierre Jolivet PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatProduct_AB", algTypes, nalg, algTypes[alg], &alg, &flg)); 24545d8c7819SPierre Jolivet PetscOptionsEnd(); 2455835f2295SStefano Zampini if (flg) PetscCall(MatProductSetAlgorithm(C, algTypes[alg])); 24565d8c7819SPierre Jolivet 24574222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIDense; 24584222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 24593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2460320f2790SHong Zhang } 246186aefd0dSHong Zhang 2462d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_AtB(Mat C) 2463d71ae5a4SJacob Faibussowitsch { 24644222ddf1SHong Zhang Mat_Product *product = C->product; 24654222ddf1SHong Zhang Mat A = product->A, B = product->B; 24664222ddf1SHong Zhang 24674222ddf1SHong Zhang PetscFunctionBegin; 246807e90273SPierre Jolivet PetscCheck(A->rmap->rstart == B->rmap->rstart && A->rmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", 246907e90273SPierre Jolivet A->rmap->rstart, A->rmap->rend, B->rmap->rstart, B->rmap->rend); 24706718818eSStefano Zampini C->ops->transposematmultsymbolic = MatTransposeMatMultSymbolic_MPIDense_MPIDense; 24716718818eSStefano Zampini C->ops->productsymbolic = MatProductSymbolic_AtB; 24723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24734222ddf1SHong Zhang } 24744222ddf1SHong Zhang 2475d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIDense_ABt(Mat C) 2476d71ae5a4SJacob Faibussowitsch { 24774222ddf1SHong Zhang Mat_Product *product = C->product; 24784222ddf1SHong Zhang const char *algTypes[2] = {"allgatherv", "cyclic"}; 24794222ddf1SHong Zhang PetscInt alg, nalg = 2; 24804222ddf1SHong Zhang PetscBool flg = PETSC_FALSE; 24814222ddf1SHong Zhang 24824222ddf1SHong Zhang PetscFunctionBegin; 24834222ddf1SHong Zhang /* Set default algorithm */ 24844222ddf1SHong Zhang alg = 0; /* default is allgatherv */ 24859566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg, "default", &flg)); 2486835f2295SStefano Zampini if (flg) PetscCall(MatProductSetAlgorithm(C, algTypes[alg])); 24874222ddf1SHong Zhang 24884222ddf1SHong Zhang /* Get runtime option */ 24894222ddf1SHong Zhang if (product->api_user) { 2490d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatTransposeMult", "Mat"); 24919566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-matmattransmult_mpidense_mpidense_via", "Algorithmic approach", "MatMatTransposeMult", algTypes, nalg, algTypes[alg], &alg, &flg)); 2492d0609cedSBarry Smith PetscOptionsEnd(); 24934222ddf1SHong Zhang } else { 2494d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_ABt", "Mat"); 24959566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatProduct_ABt", algTypes, nalg, algTypes[alg], &alg, &flg)); 2496d0609cedSBarry Smith PetscOptionsEnd(); 24974222ddf1SHong Zhang } 2498835f2295SStefano Zampini if (flg) PetscCall(MatProductSetAlgorithm(C, algTypes[alg])); 24994222ddf1SHong Zhang 25004222ddf1SHong Zhang C->ops->mattransposemultsymbolic = MatMatTransposeMultSymbolic_MPIDense_MPIDense; 25014222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_ABt; 25023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 25034222ddf1SHong Zhang } 25044222ddf1SHong Zhang 25055d8c7819SPierre Jolivet static PetscErrorCode MatProductSetFromOptions_MPIDense(Mat C) 2506d71ae5a4SJacob Faibussowitsch { 25074222ddf1SHong Zhang Mat_Product *product = C->product; 25084222ddf1SHong Zhang 25094222ddf1SHong Zhang PetscFunctionBegin; 25104222ddf1SHong Zhang switch (product->type) { 2511d71ae5a4SJacob Faibussowitsch case MATPRODUCT_AB: 2512d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIDense_AB(C)); 2513d71ae5a4SJacob Faibussowitsch break; 2514d71ae5a4SJacob Faibussowitsch case MATPRODUCT_AtB: 2515d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIDense_AtB(C)); 2516d71ae5a4SJacob Faibussowitsch break; 2517d71ae5a4SJacob Faibussowitsch case MATPRODUCT_ABt: 2518d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIDense_ABt(C)); 2519d71ae5a4SJacob Faibussowitsch break; 2520d71ae5a4SJacob Faibussowitsch default: 2521d71ae5a4SJacob Faibussowitsch break; 25224222ddf1SHong Zhang } 25233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 25244222ddf1SHong Zhang } 2525