1be1d678aSKris Buschelman 2ed3cc1f0SBarry Smith /* 3ed3cc1f0SBarry Smith Basic functions for basic parallel dense matrices. 4ed3cc1f0SBarry Smith */ 5ed3cc1f0SBarry Smith 604fea9ffSBarry Smith 7c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h> /*I "petscmat.h" I*/ 88949adfdSHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 9baa3c1c6SHong Zhang #include <petscblaslapack.h> 108965ea79SLois Curfman McInnes 11ab92ecdeSBarry Smith /*@ 12ab92ecdeSBarry Smith 13ab92ecdeSBarry Smith MatDenseGetLocalMatrix - For a MATMPIDENSE or MATSEQDENSE matrix returns the sequential 14ab92ecdeSBarry Smith matrix that represents the operator. For sequential matrices it returns itself. 15ab92ecdeSBarry Smith 16ab92ecdeSBarry Smith Input Parameter: 17ab92ecdeSBarry Smith . A - the Seq or MPI dense matrix 18ab92ecdeSBarry Smith 19ab92ecdeSBarry Smith Output Parameter: 20ab92ecdeSBarry Smith . B - the inner matrix 21ab92ecdeSBarry Smith 228e6c10adSSatish Balay Level: intermediate 238e6c10adSSatish Balay 24ab92ecdeSBarry Smith @*/ 25ab92ecdeSBarry Smith PetscErrorCode MatDenseGetLocalMatrix(Mat A,Mat *B) 26ab92ecdeSBarry Smith { 27ab92ecdeSBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 28ab92ecdeSBarry Smith PetscErrorCode ierr; 29ace3abfcSBarry Smith PetscBool flg; 30ab92ecdeSBarry Smith 31ab92ecdeSBarry Smith PetscFunctionBegin; 32251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIDENSE,&flg);CHKERRQ(ierr); 332205254eSKarl Rupp if (flg) *B = mat->A; 342205254eSKarl Rupp else *B = A; 35ab92ecdeSBarry Smith PetscFunctionReturn(0); 36ab92ecdeSBarry Smith } 37ab92ecdeSBarry Smith 38ba8c8a56SBarry Smith PetscErrorCode MatGetRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 39ba8c8a56SBarry Smith { 40ba8c8a56SBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 41ba8c8a56SBarry Smith PetscErrorCode ierr; 42d0f46423SBarry Smith PetscInt lrow,rstart = A->rmap->rstart,rend = A->rmap->rend; 43ba8c8a56SBarry Smith 44ba8c8a56SBarry Smith PetscFunctionBegin; 45e7e72b3dSBarry Smith if (row < rstart || row >= rend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows"); 46ba8c8a56SBarry Smith lrow = row - rstart; 47ba8c8a56SBarry Smith ierr = MatGetRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v);CHKERRQ(ierr); 48ba8c8a56SBarry Smith PetscFunctionReturn(0); 49ba8c8a56SBarry Smith } 50ba8c8a56SBarry Smith 51ba8c8a56SBarry Smith PetscErrorCode MatRestoreRow_MPIDense(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 52ba8c8a56SBarry Smith { 53ba8c8a56SBarry Smith PetscErrorCode ierr; 54ba8c8a56SBarry Smith 55ba8c8a56SBarry Smith PetscFunctionBegin; 56ba8c8a56SBarry Smith if (idx) {ierr = PetscFree(*idx);CHKERRQ(ierr);} 57ba8c8a56SBarry Smith if (v) {ierr = PetscFree(*v);CHKERRQ(ierr);} 58ba8c8a56SBarry Smith PetscFunctionReturn(0); 59ba8c8a56SBarry Smith } 60ba8c8a56SBarry Smith 6111bd1e4dSLisandro Dalcin PetscErrorCode MatGetDiagonalBlock_MPIDense(Mat A,Mat *a) 620de54da6SSatish Balay { 630de54da6SSatish Balay Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 646849ba73SBarry Smith PetscErrorCode ierr; 65d0f46423SBarry Smith PetscInt m = A->rmap->n,rstart = A->rmap->rstart; 6687828ca2SBarry Smith PetscScalar *array; 670de54da6SSatish Balay MPI_Comm comm; 6811bd1e4dSLisandro Dalcin Mat B; 690de54da6SSatish Balay 700de54da6SSatish Balay PetscFunctionBegin; 71e32f2f54SBarry Smith if (A->rmap->N != A->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only square matrices supported."); 720de54da6SSatish Balay 7311bd1e4dSLisandro Dalcin ierr = PetscObjectQuery((PetscObject)A,"DiagonalBlock",(PetscObject*)&B);CHKERRQ(ierr); 7411bd1e4dSLisandro Dalcin if (!B) { 750de54da6SSatish Balay ierr = PetscObjectGetComm((PetscObject)(mdn->A),&comm);CHKERRQ(ierr); 7611bd1e4dSLisandro Dalcin ierr = MatCreate(comm,&B);CHKERRQ(ierr); 7711bd1e4dSLisandro Dalcin ierr = MatSetSizes(B,m,m,m,m);CHKERRQ(ierr); 7811bd1e4dSLisandro Dalcin ierr = MatSetType(B,((PetscObject)mdn->A)->type_name);CHKERRQ(ierr); 798c778c55SBarry Smith ierr = MatDenseGetArray(mdn->A,&array);CHKERRQ(ierr); 8011bd1e4dSLisandro Dalcin ierr = MatSeqDenseSetPreallocation(B,array+m*rstart);CHKERRQ(ierr); 818c778c55SBarry Smith ierr = MatDenseRestoreArray(mdn->A,&array);CHKERRQ(ierr); 8211bd1e4dSLisandro Dalcin ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 8311bd1e4dSLisandro Dalcin ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 8411bd1e4dSLisandro Dalcin ierr = PetscObjectCompose((PetscObject)A,"DiagonalBlock",(PetscObject)B);CHKERRQ(ierr); 8511bd1e4dSLisandro Dalcin *a = B; 8611bd1e4dSLisandro Dalcin ierr = MatDestroy(&B);CHKERRQ(ierr); 872205254eSKarl Rupp } else *a = B; 880de54da6SSatish Balay PetscFunctionReturn(0); 890de54da6SSatish Balay } 900de54da6SSatish Balay 9113f74950SBarry Smith PetscErrorCode MatSetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],const PetscScalar v[],InsertMode addv) 928965ea79SLois Curfman McInnes { 9339b7565bSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)mat->data; 94dfbe8321SBarry Smith PetscErrorCode ierr; 95d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 96ace3abfcSBarry Smith PetscBool roworiented = A->roworiented; 978965ea79SLois Curfman McInnes 983a40ed3dSBarry Smith PetscFunctionBegin; 998965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 1005ef9f2a5SBarry Smith if (idxm[i] < 0) continue; 101e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 1028965ea79SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 1038965ea79SLois Curfman McInnes row = idxm[i] - rstart; 10439b7565bSBarry Smith if (roworiented) { 10539b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv);CHKERRQ(ierr); 1063a40ed3dSBarry Smith } else { 1078965ea79SLois Curfman McInnes for (j=0; j<n; j++) { 1085ef9f2a5SBarry Smith if (idxn[j] < 0) continue; 109e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 11039b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv);CHKERRQ(ierr); 11139b7565bSBarry Smith } 1128965ea79SLois Curfman McInnes } 1132205254eSKarl Rupp } else if (!A->donotstash) { 1145080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 11539b7565bSBarry Smith if (roworiented) { 116b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,idxm[i],n,idxn,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 117d36fbae8SSatish Balay } else { 118b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,idxm[i],n,idxn,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 11939b7565bSBarry Smith } 120b49de8d1SLois Curfman McInnes } 121b49de8d1SLois Curfman McInnes } 1223a40ed3dSBarry Smith PetscFunctionReturn(0); 123b49de8d1SLois Curfman McInnes } 124b49de8d1SLois Curfman McInnes 12513f74950SBarry Smith PetscErrorCode MatGetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 126b49de8d1SLois Curfman McInnes { 127b49de8d1SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 128dfbe8321SBarry Smith PetscErrorCode ierr; 129d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 130b49de8d1SLois Curfman McInnes 1313a40ed3dSBarry Smith PetscFunctionBegin; 132b49de8d1SLois Curfman McInnes for (i=0; i<m; i++) { 133e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); */ 134e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 135b49de8d1SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 136b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 137b49de8d1SLois Curfman McInnes for (j=0; j<n; j++) { 138e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); */ 139e7e72b3dSBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 140b49de8d1SLois Curfman McInnes ierr = MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j);CHKERRQ(ierr); 141b49de8d1SLois Curfman McInnes } 142e7e72b3dSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 1438965ea79SLois Curfman McInnes } 1443a40ed3dSBarry Smith PetscFunctionReturn(0); 1458965ea79SLois Curfman McInnes } 1468965ea79SLois Curfman McInnes 14749a6ff4bSBarry Smith static PetscErrorCode MatDenseGetLDA_MPIDense(Mat A,PetscInt *lda) 14849a6ff4bSBarry Smith { 14949a6ff4bSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 15049a6ff4bSBarry Smith PetscErrorCode ierr; 15149a6ff4bSBarry Smith 15249a6ff4bSBarry Smith PetscFunctionBegin; 15349a6ff4bSBarry Smith ierr = MatDenseGetLDA(a->A,lda);CHKERRQ(ierr); 15449a6ff4bSBarry Smith PetscFunctionReturn(0); 15549a6ff4bSBarry Smith } 15649a6ff4bSBarry Smith 157d3042a70SBarry Smith static PetscErrorCode MatDenseGetArray_MPIDense(Mat A,PetscScalar *array[]) 158ff14e315SSatish Balay { 159ff14e315SSatish Balay Mat_MPIDense *a = (Mat_MPIDense*)A->data; 160dfbe8321SBarry Smith PetscErrorCode ierr; 161ff14e315SSatish Balay 1623a40ed3dSBarry Smith PetscFunctionBegin; 1638c778c55SBarry Smith ierr = MatDenseGetArray(a->A,array);CHKERRQ(ierr); 1643a40ed3dSBarry Smith PetscFunctionReturn(0); 165ff14e315SSatish Balay } 166ff14e315SSatish Balay 1678572280aSBarry Smith static PetscErrorCode MatDenseGetArrayRead_MPIDense(Mat A,const PetscScalar *array[]) 1688572280aSBarry Smith { 1698572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1708572280aSBarry Smith PetscErrorCode ierr; 1718572280aSBarry Smith 1728572280aSBarry Smith PetscFunctionBegin; 1738572280aSBarry Smith ierr = MatDenseGetArrayRead(a->A,array);CHKERRQ(ierr); 1748572280aSBarry Smith PetscFunctionReturn(0); 1758572280aSBarry Smith } 1768572280aSBarry Smith 177d3042a70SBarry Smith static PetscErrorCode MatDensePlaceArray_MPIDense(Mat A,const PetscScalar array[]) 178d3042a70SBarry Smith { 179d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 180d3042a70SBarry Smith PetscErrorCode ierr; 181d3042a70SBarry Smith 182d3042a70SBarry Smith PetscFunctionBegin; 183d3042a70SBarry Smith ierr = MatDensePlaceArray(a->A,array);CHKERRQ(ierr); 184d3042a70SBarry Smith PetscFunctionReturn(0); 185d3042a70SBarry Smith } 186d3042a70SBarry Smith 187d3042a70SBarry Smith static PetscErrorCode MatDenseResetArray_MPIDense(Mat A) 188d3042a70SBarry Smith { 189d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 190d3042a70SBarry Smith PetscErrorCode ierr; 191d3042a70SBarry Smith 192d3042a70SBarry Smith PetscFunctionBegin; 193d3042a70SBarry Smith ierr = MatDenseResetArray(a->A);CHKERRQ(ierr); 194d3042a70SBarry Smith PetscFunctionReturn(0); 195d3042a70SBarry Smith } 196d3042a70SBarry Smith 1977dae84e0SHong Zhang static PetscErrorCode MatCreateSubMatrix_MPIDense(Mat A,IS isrow,IS iscol,MatReuse scall,Mat *B) 198ca3fa75bSLois Curfman McInnes { 199ca3fa75bSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data,*newmatd; 200ca3fa75bSLois Curfman McInnes Mat_SeqDense *lmat = (Mat_SeqDense*)mat->A->data; 2016849ba73SBarry Smith PetscErrorCode ierr; 2024aa3045dSJed Brown PetscInt i,j,rstart,rend,nrows,ncols,Ncols,nlrows,nlcols; 2035d0c19d7SBarry Smith const PetscInt *irow,*icol; 20487828ca2SBarry Smith PetscScalar *av,*bv,*v = lmat->v; 205ca3fa75bSLois Curfman McInnes Mat newmat; 2064aa3045dSJed Brown IS iscol_local; 20742a884f0SBarry Smith MPI_Comm comm_is,comm_mat; 208ca3fa75bSLois Curfman McInnes 209ca3fa75bSLois Curfman McInnes PetscFunctionBegin; 21042a884f0SBarry Smith ierr = PetscObjectGetComm((PetscObject)A,&comm_mat);CHKERRQ(ierr); 21142a884f0SBarry Smith ierr = PetscObjectGetComm((PetscObject)iscol,&comm_is);CHKERRQ(ierr); 21242a884f0SBarry Smith if (comm_mat != comm_is) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NOTSAMECOMM,"IS communicator must match matrix communicator"); 21342a884f0SBarry Smith 2144aa3045dSJed Brown ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 215ca3fa75bSLois Curfman McInnes ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr); 2164aa3045dSJed Brown ierr = ISGetIndices(iscol_local,&icol);CHKERRQ(ierr); 217b9b97703SBarry Smith ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr); 218b9b97703SBarry Smith ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr); 2194aa3045dSJed Brown ierr = ISGetSize(iscol,&Ncols);CHKERRQ(ierr); /* global number of columns, size of iscol_local */ 220ca3fa75bSLois Curfman McInnes 221ca3fa75bSLois Curfman McInnes /* No parallel redistribution currently supported! Should really check each index set 2227eba5e9cSLois Curfman McInnes to comfirm that it is OK. ... Currently supports only submatrix same partitioning as 2237eba5e9cSLois Curfman McInnes original matrix! */ 224ca3fa75bSLois Curfman McInnes 225ca3fa75bSLois Curfman McInnes ierr = MatGetLocalSize(A,&nlrows,&nlcols);CHKERRQ(ierr); 2267eba5e9cSLois Curfman McInnes ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr); 227ca3fa75bSLois Curfman McInnes 228ca3fa75bSLois Curfman McInnes /* Check submatrix call */ 229ca3fa75bSLois Curfman McInnes if (scall == MAT_REUSE_MATRIX) { 230e32f2f54SBarry Smith /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */ 2317eba5e9cSLois Curfman McInnes /* Really need to test rows and column sizes! */ 232ca3fa75bSLois Curfman McInnes newmat = *B; 233ca3fa75bSLois Curfman McInnes } else { 234ca3fa75bSLois Curfman McInnes /* Create and fill new matrix */ 235ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&newmat);CHKERRQ(ierr); 2364aa3045dSJed Brown ierr = MatSetSizes(newmat,nrows,ncols,PETSC_DECIDE,Ncols);CHKERRQ(ierr); 2377adad957SLisandro Dalcin ierr = MatSetType(newmat,((PetscObject)A)->type_name);CHKERRQ(ierr); 2380298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr); 239ca3fa75bSLois Curfman McInnes } 240ca3fa75bSLois Curfman McInnes 241ca3fa75bSLois Curfman McInnes /* Now extract the data pointers and do the copy, column at a time */ 242ca3fa75bSLois Curfman McInnes newmatd = (Mat_MPIDense*)newmat->data; 243ca3fa75bSLois Curfman McInnes bv = ((Mat_SeqDense*)newmatd->A->data)->v; 244ca3fa75bSLois Curfman McInnes 2454aa3045dSJed Brown for (i=0; i<Ncols; i++) { 24625a33276SHong Zhang av = v + ((Mat_SeqDense*)mat->A->data)->lda*icol[i]; 247ca3fa75bSLois Curfman McInnes for (j=0; j<nrows; j++) { 2487eba5e9cSLois Curfman McInnes *bv++ = av[irow[j] - rstart]; 249ca3fa75bSLois Curfman McInnes } 250ca3fa75bSLois Curfman McInnes } 251ca3fa75bSLois Curfman McInnes 252ca3fa75bSLois Curfman McInnes /* Assemble the matrices so that the correct flags are set */ 253ca3fa75bSLois Curfman McInnes ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 254ca3fa75bSLois Curfman McInnes ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 255ca3fa75bSLois Curfman McInnes 256ca3fa75bSLois Curfman McInnes /* Free work space */ 257ca3fa75bSLois Curfman McInnes ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr); 2585bdf786aSShri Abhyankar ierr = ISRestoreIndices(iscol_local,&icol);CHKERRQ(ierr); 25932bb1f2dSLisandro Dalcin ierr = ISDestroy(&iscol_local);CHKERRQ(ierr); 260ca3fa75bSLois Curfman McInnes *B = newmat; 261ca3fa75bSLois Curfman McInnes PetscFunctionReturn(0); 262ca3fa75bSLois Curfman McInnes } 263ca3fa75bSLois Curfman McInnes 2648c778c55SBarry Smith PetscErrorCode MatDenseRestoreArray_MPIDense(Mat A,PetscScalar *array[]) 265ff14e315SSatish Balay { 26673a71a0fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 26773a71a0fSBarry Smith PetscErrorCode ierr; 26873a71a0fSBarry Smith 2693a40ed3dSBarry Smith PetscFunctionBegin; 2708c778c55SBarry Smith ierr = MatDenseRestoreArray(a->A,array);CHKERRQ(ierr); 2713a40ed3dSBarry Smith PetscFunctionReturn(0); 272ff14e315SSatish Balay } 273ff14e315SSatish Balay 2748572280aSBarry Smith PetscErrorCode MatDenseRestoreArrayRead_MPIDense(Mat A,const PetscScalar *array[]) 2758572280aSBarry Smith { 2768572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 2778572280aSBarry Smith PetscErrorCode ierr; 2788572280aSBarry Smith 2798572280aSBarry Smith PetscFunctionBegin; 2808572280aSBarry Smith ierr = MatDenseRestoreArrayRead(a->A,array);CHKERRQ(ierr); 2818572280aSBarry Smith PetscFunctionReturn(0); 2828572280aSBarry Smith } 2838572280aSBarry Smith 284dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode) 2858965ea79SLois Curfman McInnes { 28639ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 287ce94432eSBarry Smith MPI_Comm comm; 288dfbe8321SBarry Smith PetscErrorCode ierr; 28913f74950SBarry Smith PetscInt nstash,reallocs; 2908965ea79SLois Curfman McInnes InsertMode addv; 2918965ea79SLois Curfman McInnes 2923a40ed3dSBarry Smith PetscFunctionBegin; 293ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)mat,&comm);CHKERRQ(ierr); 2948965ea79SLois Curfman McInnes /* make sure all processors are either in INSERTMODE or ADDMODE */ 295b2566f29SBarry Smith ierr = MPIU_Allreduce((PetscEnum*)&mat->insertmode,(PetscEnum*)&addv,1,MPIU_ENUM,MPI_BOR,comm);CHKERRQ(ierr); 296ce94432eSBarry Smith if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ARG_WRONGSTATE,"Cannot mix adds/inserts on different procs"); 297e0fa3b82SLois Curfman McInnes mat->insertmode = addv; /* in case this processor had no cache */ 2988965ea79SLois Curfman McInnes 299d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 3008798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 301ae15b995SBarry Smith ierr = PetscInfo2(mdn->A,"Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 3023a40ed3dSBarry Smith PetscFunctionReturn(0); 3038965ea79SLois Curfman McInnes } 3048965ea79SLois Curfman McInnes 305dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode) 3068965ea79SLois Curfman McInnes { 30739ddd567SLois Curfman McInnes Mat_MPIDense *mdn=(Mat_MPIDense*)mat->data; 3086849ba73SBarry Smith PetscErrorCode ierr; 30913f74950SBarry Smith PetscInt i,*row,*col,flg,j,rstart,ncols; 31013f74950SBarry Smith PetscMPIInt n; 31187828ca2SBarry Smith PetscScalar *val; 3128965ea79SLois Curfman McInnes 3133a40ed3dSBarry Smith PetscFunctionBegin; 3148965ea79SLois Curfman McInnes /* wait on receives */ 3157ef1d9bdSSatish Balay while (1) { 3168798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 3177ef1d9bdSSatish Balay if (!flg) break; 3188965ea79SLois Curfman McInnes 3197ef1d9bdSSatish Balay for (i=0; i<n;) { 3207ef1d9bdSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 3212205254eSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 3222205254eSKarl Rupp if (row[j] != rstart) break; 3232205254eSKarl Rupp } 3247ef1d9bdSSatish Balay if (j < n) ncols = j-i; 3257ef1d9bdSSatish Balay else ncols = n-i; 3267ef1d9bdSSatish Balay /* Now assemble all these values with a single function call */ 3274b4eb8d3SJed Brown ierr = MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr); 3287ef1d9bdSSatish Balay i = j; 3298965ea79SLois Curfman McInnes } 3307ef1d9bdSSatish Balay } 3318798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 3328965ea79SLois Curfman McInnes 33339ddd567SLois Curfman McInnes ierr = MatAssemblyBegin(mdn->A,mode);CHKERRQ(ierr); 33439ddd567SLois Curfman McInnes ierr = MatAssemblyEnd(mdn->A,mode);CHKERRQ(ierr); 3358965ea79SLois Curfman McInnes 3366d4a8577SBarry Smith if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 33739ddd567SLois Curfman McInnes ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 3388965ea79SLois Curfman McInnes } 3393a40ed3dSBarry Smith PetscFunctionReturn(0); 3408965ea79SLois Curfman McInnes } 3418965ea79SLois Curfman McInnes 342dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIDense(Mat A) 3438965ea79SLois Curfman McInnes { 344dfbe8321SBarry Smith PetscErrorCode ierr; 34539ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 3463a40ed3dSBarry Smith 3473a40ed3dSBarry Smith PetscFunctionBegin; 3483a40ed3dSBarry Smith ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 3493a40ed3dSBarry Smith PetscFunctionReturn(0); 3508965ea79SLois Curfman McInnes } 3518965ea79SLois Curfman McInnes 3528965ea79SLois Curfman McInnes /* the code does not do the diagonal entries correctly unless the 3538965ea79SLois Curfman McInnes matrix is square and the column and row owerships are identical. 3548965ea79SLois Curfman McInnes This is a BUG. The only way to fix it seems to be to access 3553501a2bdSLois Curfman McInnes mdn->A and mdn->B directly and not through the MatZeroRows() 3568965ea79SLois Curfman McInnes routine. 3578965ea79SLois Curfman McInnes */ 3582b40b63fSBarry Smith PetscErrorCode MatZeroRows_MPIDense(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 3598965ea79SLois Curfman McInnes { 36039ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 3616849ba73SBarry Smith PetscErrorCode ierr; 362d0f46423SBarry Smith PetscInt i,*owners = A->rmap->range; 36376ec1555SBarry Smith PetscInt *sizes,j,idx,nsends; 36413f74950SBarry Smith PetscInt nmax,*svalues,*starts,*owner,nrecvs; 3657adad957SLisandro Dalcin PetscInt *rvalues,tag = ((PetscObject)A)->tag,count,base,slen,*source; 36613f74950SBarry Smith PetscInt *lens,*lrows,*values; 36713f74950SBarry Smith PetscMPIInt n,imdex,rank = l->rank,size = l->size; 368ce94432eSBarry Smith MPI_Comm comm; 3698965ea79SLois Curfman McInnes MPI_Request *send_waits,*recv_waits; 3708965ea79SLois Curfman McInnes MPI_Status recv_status,*send_status; 371ace3abfcSBarry Smith PetscBool found; 37297b48c8fSBarry Smith const PetscScalar *xx; 37397b48c8fSBarry Smith PetscScalar *bb; 3748965ea79SLois Curfman McInnes 3753a40ed3dSBarry Smith PetscFunctionBegin; 376ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 377ce94432eSBarry Smith if (A->rmap->N != A->cmap->N) SETERRQ(comm,PETSC_ERR_SUP,"Only handles square matrices"); 378b9679d65SBarry Smith if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only handles matrices with identical column and row ownership"); 3798965ea79SLois Curfman McInnes /* first count number of contributors to each processor */ 380f628708eSJed Brown ierr = PetscCalloc1(2*size,&sizes);CHKERRQ(ierr); 381037dbc42SBarry Smith ierr = PetscMalloc1(N+1,&owner);CHKERRQ(ierr); /* see note*/ 3828965ea79SLois Curfman McInnes for (i=0; i<N; i++) { 3838965ea79SLois Curfman McInnes idx = rows[i]; 38435d8aa7fSBarry Smith found = PETSC_FALSE; 3858965ea79SLois Curfman McInnes for (j=0; j<size; j++) { 3868965ea79SLois Curfman McInnes if (idx >= owners[j] && idx < owners[j+1]) { 38776ec1555SBarry Smith sizes[2*j]++; sizes[2*j+1] = 1; owner[i] = j; found = PETSC_TRUE; break; 3888965ea79SLois Curfman McInnes } 3898965ea79SLois Curfman McInnes } 390e32f2f54SBarry Smith if (!found) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Index out of range"); 3918965ea79SLois Curfman McInnes } 3922205254eSKarl Rupp nsends = 0; 39376ec1555SBarry Smith for (i=0; i<size; i++) nsends += sizes[2*i+1]; 3948965ea79SLois Curfman McInnes 3958965ea79SLois Curfman McInnes /* inform other processors of number of messages and max length*/ 39676ec1555SBarry Smith ierr = PetscMaxSum(comm,sizes,&nmax,&nrecvs);CHKERRQ(ierr); 3978965ea79SLois Curfman McInnes 3988965ea79SLois Curfman McInnes /* post receives: */ 399785e854fSJed Brown ierr = PetscMalloc1((nrecvs+1)*(nmax+1),&rvalues);CHKERRQ(ierr); 400854ce69bSBarry Smith ierr = PetscMalloc1(nrecvs+1,&recv_waits);CHKERRQ(ierr); 4018965ea79SLois Curfman McInnes for (i=0; i<nrecvs; i++) { 40213f74950SBarry Smith ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 4038965ea79SLois Curfman McInnes } 4048965ea79SLois Curfman McInnes 4058965ea79SLois Curfman McInnes /* do sends: 4068965ea79SLois Curfman McInnes 1) starts[i] gives the starting index in svalues for stuff going to 4078965ea79SLois Curfman McInnes the ith processor 4088965ea79SLois Curfman McInnes */ 409854ce69bSBarry Smith ierr = PetscMalloc1(N+1,&svalues);CHKERRQ(ierr); 410854ce69bSBarry Smith ierr = PetscMalloc1(nsends+1,&send_waits);CHKERRQ(ierr); 411854ce69bSBarry Smith ierr = PetscMalloc1(size+1,&starts);CHKERRQ(ierr); 4128965ea79SLois Curfman McInnes 4138965ea79SLois Curfman McInnes starts[0] = 0; 41476ec1555SBarry Smith for (i=1; i<size; i++) starts[i] = starts[i-1] + sizes[2*i-2]; 4152205254eSKarl Rupp for (i=0; i<N; i++) svalues[starts[owner[i]]++] = rows[i]; 4162205254eSKarl Rupp 4172205254eSKarl Rupp starts[0] = 0; 41876ec1555SBarry Smith for (i=1; i<size+1; i++) starts[i] = starts[i-1] + sizes[2*i-2]; 4198965ea79SLois Curfman McInnes count = 0; 4208965ea79SLois Curfman McInnes for (i=0; i<size; i++) { 42176ec1555SBarry Smith if (sizes[2*i+1]) { 42276ec1555SBarry Smith ierr = MPI_Isend(svalues+starts[i],sizes[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 4238965ea79SLois Curfman McInnes } 4248965ea79SLois Curfman McInnes } 425606d414cSSatish Balay ierr = PetscFree(starts);CHKERRQ(ierr); 4268965ea79SLois Curfman McInnes 4278965ea79SLois Curfman McInnes base = owners[rank]; 4288965ea79SLois Curfman McInnes 4298965ea79SLois Curfman McInnes /* wait on receives */ 430dcca6d9dSJed Brown ierr = PetscMalloc2(nrecvs,&lens,nrecvs,&source);CHKERRQ(ierr); 43174ed9c26SBarry Smith count = nrecvs; 43274ed9c26SBarry Smith slen = 0; 4338965ea79SLois Curfman McInnes while (count) { 434ca161407SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 4358965ea79SLois Curfman McInnes /* unpack receives into our local space */ 43613f74950SBarry Smith ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr); 4372205254eSKarl Rupp 4388965ea79SLois Curfman McInnes source[imdex] = recv_status.MPI_SOURCE; 4398965ea79SLois Curfman McInnes lens[imdex] = n; 4408965ea79SLois Curfman McInnes slen += n; 4418965ea79SLois Curfman McInnes count--; 4428965ea79SLois Curfman McInnes } 443606d414cSSatish Balay ierr = PetscFree(recv_waits);CHKERRQ(ierr); 4448965ea79SLois Curfman McInnes 4458965ea79SLois Curfman McInnes /* move the data into the send scatter */ 446854ce69bSBarry Smith ierr = PetscMalloc1(slen+1,&lrows);CHKERRQ(ierr); 4478965ea79SLois Curfman McInnes count = 0; 4488965ea79SLois Curfman McInnes for (i=0; i<nrecvs; i++) { 4498965ea79SLois Curfman McInnes values = rvalues + i*nmax; 4508965ea79SLois Curfman McInnes for (j=0; j<lens[i]; j++) { 4518965ea79SLois Curfman McInnes lrows[count++] = values[j] - base; 4528965ea79SLois Curfman McInnes } 4538965ea79SLois Curfman McInnes } 454606d414cSSatish Balay ierr = PetscFree(rvalues);CHKERRQ(ierr); 45574ed9c26SBarry Smith ierr = PetscFree2(lens,source);CHKERRQ(ierr); 456606d414cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 45776ec1555SBarry Smith ierr = PetscFree(sizes);CHKERRQ(ierr); 4588965ea79SLois Curfman McInnes 45997b48c8fSBarry Smith /* fix right hand side if needed */ 46097b48c8fSBarry Smith if (x && b) { 46197b48c8fSBarry Smith ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr); 46297b48c8fSBarry Smith ierr = VecGetArray(b,&bb);CHKERRQ(ierr); 46397b48c8fSBarry Smith for (i=0; i<slen; i++) { 46497b48c8fSBarry Smith bb[lrows[i]] = diag*xx[lrows[i]]; 46597b48c8fSBarry Smith } 46697b48c8fSBarry Smith ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr); 46797b48c8fSBarry Smith ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr); 46897b48c8fSBarry Smith } 46997b48c8fSBarry Smith 4708965ea79SLois Curfman McInnes /* actually zap the local rows */ 471b9679d65SBarry Smith ierr = MatZeroRows(l->A,slen,lrows,0.0,0,0);CHKERRQ(ierr); 472e2eb51b1SBarry Smith if (diag != 0.0) { 473b9679d65SBarry Smith Mat_SeqDense *ll = (Mat_SeqDense*)l->A->data; 474b9679d65SBarry Smith PetscInt m = ll->lda, i; 475b9679d65SBarry Smith 476b9679d65SBarry Smith for (i=0; i<slen; i++) { 477b9679d65SBarry Smith ll->v[lrows[i] + m*(A->cmap->rstart + lrows[i])] = diag; 478b9679d65SBarry Smith } 479b9679d65SBarry Smith } 480606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 4818965ea79SLois Curfman McInnes 4828965ea79SLois Curfman McInnes /* wait on sends */ 4838965ea79SLois Curfman McInnes if (nsends) { 484785e854fSJed Brown ierr = PetscMalloc1(nsends,&send_status);CHKERRQ(ierr); 485ca161407SBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 486606d414cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 4878965ea79SLois Curfman McInnes } 488606d414cSSatish Balay ierr = PetscFree(send_waits);CHKERRQ(ierr); 489606d414cSSatish Balay ierr = PetscFree(svalues);CHKERRQ(ierr); 4903a40ed3dSBarry Smith PetscFunctionReturn(0); 4918965ea79SLois Curfman McInnes } 4928965ea79SLois Curfman McInnes 493cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMult_SeqDense(Mat,Vec,Vec); 494cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultAdd_SeqDense(Mat,Vec,Vec,Vec); 495cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTranspose_SeqDense(Mat,Vec,Vec); 496cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTransposeAdd_SeqDense(Mat,Vec,Vec,Vec); 497cc2e6a90SBarry Smith 498dfbe8321SBarry Smith PetscErrorCode MatMult_MPIDense(Mat mat,Vec xx,Vec yy) 4998965ea79SLois Curfman McInnes { 50039ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 501dfbe8321SBarry Smith PetscErrorCode ierr; 502c456f294SBarry Smith 5033a40ed3dSBarry Smith PetscFunctionBegin; 504ca9f406cSSatish Balay ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 505ca9f406cSSatish Balay ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 506cc2e6a90SBarry Smith ierr = MatMult_SeqDense(mdn->A,mdn->lvec,yy);CHKERRQ(ierr); 5073a40ed3dSBarry Smith PetscFunctionReturn(0); 5088965ea79SLois Curfman McInnes } 5098965ea79SLois Curfman McInnes 510dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz) 5118965ea79SLois Curfman McInnes { 51239ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 513dfbe8321SBarry Smith PetscErrorCode ierr; 514c456f294SBarry Smith 5153a40ed3dSBarry Smith PetscFunctionBegin; 516ca9f406cSSatish Balay ierr = VecScatterBegin(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 517ca9f406cSSatish Balay ierr = VecScatterEnd(mdn->Mvctx,xx,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 518cc2e6a90SBarry Smith ierr = MatMultAdd_SeqDense(mdn->A,mdn->lvec,yy,zz);CHKERRQ(ierr); 5193a40ed3dSBarry Smith PetscFunctionReturn(0); 5208965ea79SLois Curfman McInnes } 5218965ea79SLois Curfman McInnes 522dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIDense(Mat A,Vec xx,Vec yy) 523096963f5SLois Curfman McInnes { 524096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 525dfbe8321SBarry Smith PetscErrorCode ierr; 52687828ca2SBarry Smith PetscScalar zero = 0.0; 527096963f5SLois Curfman McInnes 5283a40ed3dSBarry Smith PetscFunctionBegin; 5292dcb1b2aSMatthew Knepley ierr = VecSet(yy,zero);CHKERRQ(ierr); 530cc2e6a90SBarry Smith ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr); 531ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 532ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 5333a40ed3dSBarry Smith PetscFunctionReturn(0); 534096963f5SLois Curfman McInnes } 535096963f5SLois Curfman McInnes 536dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz) 537096963f5SLois Curfman McInnes { 538096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 539dfbe8321SBarry Smith PetscErrorCode ierr; 540096963f5SLois Curfman McInnes 5413a40ed3dSBarry Smith PetscFunctionBegin; 5423501a2bdSLois Curfman McInnes ierr = VecCopy(yy,zz);CHKERRQ(ierr); 543cc2e6a90SBarry Smith ierr = MatMultTranspose_SeqDense(a->A,xx,a->lvec);CHKERRQ(ierr); 544ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 545ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 5463a40ed3dSBarry Smith PetscFunctionReturn(0); 547096963f5SLois Curfman McInnes } 548096963f5SLois Curfman McInnes 549dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIDense(Mat A,Vec v) 5508965ea79SLois Curfman McInnes { 55139ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 552096963f5SLois Curfman McInnes Mat_SeqDense *aloc = (Mat_SeqDense*)a->A->data; 553dfbe8321SBarry Smith PetscErrorCode ierr; 554d0f46423SBarry Smith PetscInt len,i,n,m = A->rmap->n,radd; 55587828ca2SBarry Smith PetscScalar *x,zero = 0.0; 556ed3cc1f0SBarry Smith 5573a40ed3dSBarry Smith PetscFunctionBegin; 5582dcb1b2aSMatthew Knepley ierr = VecSet(v,zero);CHKERRQ(ierr); 5591ebc52fbSHong Zhang ierr = VecGetArray(v,&x);CHKERRQ(ierr); 560096963f5SLois Curfman McInnes ierr = VecGetSize(v,&n);CHKERRQ(ierr); 561e32f2f54SBarry Smith if (n != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec"); 562d0f46423SBarry Smith len = PetscMin(a->A->rmap->n,a->A->cmap->n); 563d0f46423SBarry Smith radd = A->rmap->rstart*m; 56444cd7ae7SLois Curfman McInnes for (i=0; i<len; i++) { 565096963f5SLois Curfman McInnes x[i] = aloc->v[radd + i*m + i]; 566096963f5SLois Curfman McInnes } 5671ebc52fbSHong Zhang ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 5683a40ed3dSBarry Smith PetscFunctionReturn(0); 5698965ea79SLois Curfman McInnes } 5708965ea79SLois Curfman McInnes 571dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIDense(Mat mat) 5728965ea79SLois Curfman McInnes { 5733501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 574dfbe8321SBarry Smith PetscErrorCode ierr; 575ed3cc1f0SBarry Smith 5763a40ed3dSBarry Smith PetscFunctionBegin; 577aa482453SBarry Smith #if defined(PETSC_USE_LOG) 578d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D, Cols=%D",mat->rmap->N,mat->cmap->N); 5798965ea79SLois Curfman McInnes #endif 5808798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 5816bf464f9SBarry Smith ierr = MatDestroy(&mdn->A);CHKERRQ(ierr); 5826bf464f9SBarry Smith ierr = VecDestroy(&mdn->lvec);CHKERRQ(ierr); 5836bf464f9SBarry Smith ierr = VecScatterDestroy(&mdn->Mvctx);CHKERRQ(ierr); 58401b82886SBarry Smith 585bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 586dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 5878baccfbdSHong Zhang 58849a6ff4bSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",NULL);CHKERRQ(ierr); 5898baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",NULL);CHKERRQ(ierr); 5908572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",NULL);CHKERRQ(ierr); 5918572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",NULL);CHKERRQ(ierr); 5928572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",NULL);CHKERRQ(ierr); 593d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",NULL);CHKERRQ(ierr); 594d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",NULL);CHKERRQ(ierr); 5958baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 5968baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",NULL);CHKERRQ(ierr); 5978baccfbdSHong Zhang #endif 598bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",NULL);CHKERRQ(ierr); 599bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMult_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 600bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 601bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 6028baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMult_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 6038baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultSymbolic_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 6048baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultNumeric_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 60586aefd0dSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",NULL);CHKERRQ(ierr); 60686aefd0dSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",NULL);CHKERRQ(ierr); 6073a40ed3dSBarry Smith PetscFunctionReturn(0); 6088965ea79SLois Curfman McInnes } 60939ddd567SLois Curfman McInnes 6106849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_Binary(Mat mat,PetscViewer viewer) 6118965ea79SLois Curfman McInnes { 61239ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 613dfbe8321SBarry Smith PetscErrorCode ierr; 614aa05aa95SBarry Smith PetscViewerFormat format; 615aa05aa95SBarry Smith int fd; 616d0f46423SBarry Smith PetscInt header[4],mmax,N = mat->cmap->N,i,j,m,k; 617aa05aa95SBarry Smith PetscMPIInt rank,tag = ((PetscObject)viewer)->tag,size; 618578230a0SSatish Balay PetscScalar *work,*v,*vv; 619aa05aa95SBarry Smith Mat_SeqDense *a = (Mat_SeqDense*)mdn->A->data; 6207056b6fcSBarry Smith 6213a40ed3dSBarry Smith PetscFunctionBegin; 62239ddd567SLois Curfman McInnes if (mdn->size == 1) { 62339ddd567SLois Curfman McInnes ierr = MatView(mdn->A,viewer);CHKERRQ(ierr); 624aa05aa95SBarry Smith } else { 625aa05aa95SBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 626ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr); 627ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&size);CHKERRQ(ierr); 628aa05aa95SBarry Smith 629aa05aa95SBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 630f4403165SShri Abhyankar if (format == PETSC_VIEWER_NATIVE) { 631aa05aa95SBarry Smith 632aa05aa95SBarry Smith if (!rank) { 633aa05aa95SBarry Smith /* store the matrix as a dense matrix */ 6340700a824SBarry Smith header[0] = MAT_FILE_CLASSID; 635d0f46423SBarry Smith header[1] = mat->rmap->N; 636aa05aa95SBarry Smith header[2] = N; 637aa05aa95SBarry Smith header[3] = MATRIX_BINARY_FORMAT_DENSE; 638aa05aa95SBarry Smith ierr = PetscBinaryWrite(fd,header,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 639aa05aa95SBarry Smith 640aa05aa95SBarry Smith /* get largest work array needed for transposing array */ 641d0f46423SBarry Smith mmax = mat->rmap->n; 642aa05aa95SBarry Smith for (i=1; i<size; i++) { 643d0f46423SBarry Smith mmax = PetscMax(mmax,mat->rmap->range[i+1] - mat->rmap->range[i]); 6448965ea79SLois Curfman McInnes } 645785e854fSJed Brown ierr = PetscMalloc1(mmax*N,&work);CHKERRQ(ierr); 646aa05aa95SBarry Smith 647aa05aa95SBarry Smith /* write out local array, by rows */ 648d0f46423SBarry Smith m = mat->rmap->n; 649aa05aa95SBarry Smith v = a->v; 650aa05aa95SBarry Smith for (j=0; j<N; j++) { 651aa05aa95SBarry Smith for (i=0; i<m; i++) { 652578230a0SSatish Balay work[j + i*N] = *v++; 653aa05aa95SBarry Smith } 654aa05aa95SBarry Smith } 655aa05aa95SBarry Smith ierr = PetscBinaryWrite(fd,work,m*N,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr); 656aa05aa95SBarry Smith /* get largest work array to receive messages from other processes, excludes process zero */ 657aa05aa95SBarry Smith mmax = 0; 658aa05aa95SBarry Smith for (i=1; i<size; i++) { 659d0f46423SBarry Smith mmax = PetscMax(mmax,mat->rmap->range[i+1] - mat->rmap->range[i]); 660aa05aa95SBarry Smith } 661785e854fSJed Brown ierr = PetscMalloc1(mmax*N,&vv);CHKERRQ(ierr); 662aa05aa95SBarry Smith for (k = 1; k < size; k++) { 663f8009846SMatthew Knepley v = vv; 664d0f46423SBarry Smith m = mat->rmap->range[k+1] - mat->rmap->range[k]; 665ce94432eSBarry Smith ierr = MPIULong_Recv(v,m*N,MPIU_SCALAR,k,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 666aa05aa95SBarry Smith 667aa05aa95SBarry Smith for (j = 0; j < N; j++) { 668aa05aa95SBarry Smith for (i = 0; i < m; i++) { 669578230a0SSatish Balay work[j + i*N] = *v++; 670aa05aa95SBarry Smith } 671aa05aa95SBarry Smith } 672aa05aa95SBarry Smith ierr = PetscBinaryWrite(fd,work,m*N,PETSC_SCALAR,PETSC_FALSE);CHKERRQ(ierr); 673aa05aa95SBarry Smith } 674aa05aa95SBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 675578230a0SSatish Balay ierr = PetscFree(vv);CHKERRQ(ierr); 676aa05aa95SBarry Smith } else { 677ce94432eSBarry Smith ierr = MPIULong_Send(a->v,mat->rmap->n*mat->cmap->N,MPIU_SCALAR,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 678aa05aa95SBarry Smith } 6796a9046bcSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"To store a parallel dense matrix you must first call PetscViewerPushFormat(viewer,PETSC_VIEWER_NATIVE)"); 680aa05aa95SBarry Smith } 6813a40ed3dSBarry Smith PetscFunctionReturn(0); 6828965ea79SLois Curfman McInnes } 6838965ea79SLois Curfman McInnes 6847da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqDense(Mat,PetscViewer); 6859804daf3SBarry Smith #include <petscdraw.h> 6866849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 6878965ea79SLois Curfman McInnes { 68839ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 689dfbe8321SBarry Smith PetscErrorCode ierr; 6907da1fb6eSBarry Smith PetscMPIInt rank = mdn->rank; 69119fd82e9SBarry Smith PetscViewerType vtype; 692ace3abfcSBarry Smith PetscBool iascii,isdraw; 693b0a32e0cSBarry Smith PetscViewer sviewer; 694f3ef73ceSBarry Smith PetscViewerFormat format; 6958965ea79SLois Curfman McInnes 6963a40ed3dSBarry Smith PetscFunctionBegin; 697251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 698251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 69932077d6dSBarry Smith if (iascii) { 700b0a32e0cSBarry Smith ierr = PetscViewerGetType(viewer,&vtype);CHKERRQ(ierr); 701b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 702456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 7034e220ebcSLois Curfman McInnes MatInfo info; 704888f2ed8SSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 7051575c14dSBarry Smith ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr); 7067b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer," [%d] local rows %D nz %D nz alloced %D mem %D \n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory);CHKERRQ(ierr); 707b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 7081575c14dSBarry Smith ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr); 7095d00a290SHong Zhang ierr = VecScatterView(mdn->Mvctx,viewer);CHKERRQ(ierr); 7103a40ed3dSBarry Smith PetscFunctionReturn(0); 711fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 7123a40ed3dSBarry Smith PetscFunctionReturn(0); 7138965ea79SLois Curfman McInnes } 714f1af5d2fSBarry Smith } else if (isdraw) { 715b0a32e0cSBarry Smith PetscDraw draw; 716ace3abfcSBarry Smith PetscBool isnull; 717f1af5d2fSBarry Smith 718b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 719b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 720f1af5d2fSBarry Smith if (isnull) PetscFunctionReturn(0); 721f1af5d2fSBarry Smith } 72277ed5343SBarry Smith 7237da1fb6eSBarry Smith { 7248965ea79SLois Curfman McInnes /* assemble the entire matrix onto first processor. */ 7258965ea79SLois Curfman McInnes Mat A; 726d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,m,row,i,nz; 727ba8c8a56SBarry Smith PetscInt *cols; 728ba8c8a56SBarry Smith PetscScalar *vals; 7298965ea79SLois Curfman McInnes 730ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr); 7318965ea79SLois Curfman McInnes if (!rank) { 732f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 7333a40ed3dSBarry Smith } else { 734f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 7358965ea79SLois Curfman McInnes } 7367adad957SLisandro Dalcin /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */ 737878740d9SKris Buschelman ierr = MatSetType(A,MATMPIDENSE);CHKERRQ(ierr); 7380298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(A,NULL);CHKERRQ(ierr); 7393bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr); 7408965ea79SLois Curfman McInnes 74139ddd567SLois Curfman McInnes /* Copy the matrix ... This isn't the most efficient means, 74239ddd567SLois Curfman McInnes but it's quick for now */ 74351022da4SBarry Smith A->insertmode = INSERT_VALUES; 7442205254eSKarl Rupp 7452205254eSKarl Rupp row = mat->rmap->rstart; 7462205254eSKarl Rupp m = mdn->A->rmap->n; 7478965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 748ba8c8a56SBarry Smith ierr = MatGetRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 749ba8c8a56SBarry Smith ierr = MatSetValues_MPIDense(A,1,&row,nz,cols,vals,INSERT_VALUES);CHKERRQ(ierr); 750ba8c8a56SBarry Smith ierr = MatRestoreRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 75139ddd567SLois Curfman McInnes row++; 7528965ea79SLois Curfman McInnes } 7538965ea79SLois Curfman McInnes 7546d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 7556d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 7563f08860eSBarry Smith ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 757b9b97703SBarry Smith if (!rank) { 7581a9d3c3cSBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPIDense*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr); 7597da1fb6eSBarry Smith ierr = MatView_SeqDense(((Mat_MPIDense*)(A->data))->A,sviewer);CHKERRQ(ierr); 7608965ea79SLois Curfman McInnes } 7613f08860eSBarry Smith ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 762b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 7636bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 7648965ea79SLois Curfman McInnes } 7653a40ed3dSBarry Smith PetscFunctionReturn(0); 7668965ea79SLois Curfman McInnes } 7678965ea79SLois Curfman McInnes 768dfbe8321SBarry Smith PetscErrorCode MatView_MPIDense(Mat mat,PetscViewer viewer) 7698965ea79SLois Curfman McInnes { 770dfbe8321SBarry Smith PetscErrorCode ierr; 771ace3abfcSBarry Smith PetscBool iascii,isbinary,isdraw,issocket; 7728965ea79SLois Curfman McInnes 773433994e6SBarry Smith PetscFunctionBegin; 774251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 775251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 776251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 777251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 7780f5bd95cSBarry Smith 77932077d6dSBarry Smith if (iascii || issocket || isdraw) { 780f1af5d2fSBarry Smith ierr = MatView_MPIDense_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 7810f5bd95cSBarry Smith } else if (isbinary) { 7823a40ed3dSBarry Smith ierr = MatView_MPIDense_Binary(mat,viewer);CHKERRQ(ierr); 78311aeaf0aSBarry Smith } 7843a40ed3dSBarry Smith PetscFunctionReturn(0); 7858965ea79SLois Curfman McInnes } 7868965ea79SLois Curfman McInnes 787dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info) 7888965ea79SLois Curfman McInnes { 7893501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 7903501a2bdSLois Curfman McInnes Mat mdn = mat->A; 791dfbe8321SBarry Smith PetscErrorCode ierr; 792329f5518SBarry Smith PetscReal isend[5],irecv[5]; 7938965ea79SLois Curfman McInnes 7943a40ed3dSBarry Smith PetscFunctionBegin; 7954e220ebcSLois Curfman McInnes info->block_size = 1.0; 7962205254eSKarl Rupp 7974e220ebcSLois Curfman McInnes ierr = MatGetInfo(mdn,MAT_LOCAL,info);CHKERRQ(ierr); 7982205254eSKarl Rupp 7994e220ebcSLois Curfman McInnes isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 8004e220ebcSLois Curfman McInnes isend[3] = info->memory; isend[4] = info->mallocs; 8018965ea79SLois Curfman McInnes if (flag == MAT_LOCAL) { 8024e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 8034e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 8044e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 8054e220ebcSLois Curfman McInnes info->memory = isend[3]; 8064e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 8078965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 808b2566f29SBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 8092205254eSKarl Rupp 8104e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 8114e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 8124e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 8134e220ebcSLois Curfman McInnes info->memory = irecv[3]; 8144e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 8158965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 816b2566f29SBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 8172205254eSKarl Rupp 8184e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 8194e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 8204e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 8214e220ebcSLois Curfman McInnes info->memory = irecv[3]; 8224e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 8238965ea79SLois Curfman McInnes } 8244e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 8254e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 8264e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 8273a40ed3dSBarry Smith PetscFunctionReturn(0); 8288965ea79SLois Curfman McInnes } 8298965ea79SLois Curfman McInnes 830ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIDense(Mat A,MatOption op,PetscBool flg) 8318965ea79SLois Curfman McInnes { 83239ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 833dfbe8321SBarry Smith PetscErrorCode ierr; 8348965ea79SLois Curfman McInnes 8353a40ed3dSBarry Smith PetscFunctionBegin; 83612c028f9SKris Buschelman switch (op) { 837512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 83812c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 83912c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 84043674050SBarry Smith MatCheckPreallocated(A,1); 8414e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 84212c028f9SKris Buschelman break; 84312c028f9SKris Buschelman case MAT_ROW_ORIENTED: 84443674050SBarry Smith MatCheckPreallocated(A,1); 8454e0d8c25SBarry Smith a->roworiented = flg; 8464e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 84712c028f9SKris Buschelman break; 8484e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 84913fa8e87SLisandro Dalcin case MAT_KEEP_NONZERO_PATTERN: 85012c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 851290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 85212c028f9SKris Buschelman break; 85312c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 8544e0d8c25SBarry Smith a->donotstash = flg; 85512c028f9SKris Buschelman break; 85677e54ba9SKris Buschelman case MAT_SYMMETRIC: 85777e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 8589a4540c5SBarry Smith case MAT_HERMITIAN: 8599a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 860600fe468SBarry Smith case MAT_IGNORE_LOWER_TRIANGULAR: 8615d7aebe8SStefano Zampini case MAT_IGNORE_ZERO_ENTRIES: 862290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 86377e54ba9SKris Buschelman break; 86412c028f9SKris Buschelman default: 865e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %s",MatOptions[op]); 8663a40ed3dSBarry Smith } 8673a40ed3dSBarry Smith PetscFunctionReturn(0); 8688965ea79SLois Curfman McInnes } 8698965ea79SLois Curfman McInnes 8708965ea79SLois Curfman McInnes 871dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIDense(Mat A,Vec ll,Vec rr) 8725b2fa520SLois Curfman McInnes { 8735b2fa520SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 8745b2fa520SLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)mdn->A->data; 875bca11509SBarry Smith const PetscScalar *l,*r; 876bca11509SBarry Smith PetscScalar x,*v; 877dfbe8321SBarry Smith PetscErrorCode ierr; 878d0f46423SBarry Smith PetscInt i,j,s2a,s3a,s2,s3,m=mdn->A->rmap->n,n=mdn->A->cmap->n; 8795b2fa520SLois Curfman McInnes 8805b2fa520SLois Curfman McInnes PetscFunctionBegin; 88172d926a5SLois Curfman McInnes ierr = MatGetLocalSize(A,&s2,&s3);CHKERRQ(ierr); 8825b2fa520SLois Curfman McInnes if (ll) { 88372d926a5SLois Curfman McInnes ierr = VecGetLocalSize(ll,&s2a);CHKERRQ(ierr); 884e32f2f54SBarry Smith if (s2a != s2) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vector non-conforming local size, %d != %d.", s2a, s2); 885bca11509SBarry Smith ierr = VecGetArrayRead(ll,&l);CHKERRQ(ierr); 8865b2fa520SLois Curfman McInnes for (i=0; i<m; i++) { 8875b2fa520SLois Curfman McInnes x = l[i]; 8885b2fa520SLois Curfman McInnes v = mat->v + i; 8895b2fa520SLois Curfman McInnes for (j=0; j<n; j++) { (*v) *= x; v+= m;} 8905b2fa520SLois Curfman McInnes } 891bca11509SBarry Smith ierr = VecRestoreArrayRead(ll,&l);CHKERRQ(ierr); 892efee365bSSatish Balay ierr = PetscLogFlops(n*m);CHKERRQ(ierr); 8935b2fa520SLois Curfman McInnes } 8945b2fa520SLois Curfman McInnes if (rr) { 895175be7b4SMatthew Knepley ierr = VecGetLocalSize(rr,&s3a);CHKERRQ(ierr); 896e32f2f54SBarry Smith if (s3a != s3) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vec non-conforming local size, %d != %d.", s3a, s3); 897ca9f406cSSatish Balay ierr = VecScatterBegin(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 898ca9f406cSSatish Balay ierr = VecScatterEnd(mdn->Mvctx,rr,mdn->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 899bca11509SBarry Smith ierr = VecGetArrayRead(mdn->lvec,&r);CHKERRQ(ierr); 9005b2fa520SLois Curfman McInnes for (i=0; i<n; i++) { 9015b2fa520SLois Curfman McInnes x = r[i]; 9025b2fa520SLois Curfman McInnes v = mat->v + i*m; 9032205254eSKarl Rupp for (j=0; j<m; j++) (*v++) *= x; 9045b2fa520SLois Curfman McInnes } 905bca11509SBarry Smith ierr = VecRestoreArrayRead(mdn->lvec,&r);CHKERRQ(ierr); 906efee365bSSatish Balay ierr = PetscLogFlops(n*m);CHKERRQ(ierr); 9075b2fa520SLois Curfman McInnes } 9085b2fa520SLois Curfman McInnes PetscFunctionReturn(0); 9095b2fa520SLois Curfman McInnes } 9105b2fa520SLois Curfman McInnes 911dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIDense(Mat A,NormType type,PetscReal *nrm) 912096963f5SLois Curfman McInnes { 9133501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 9143501a2bdSLois Curfman McInnes Mat_SeqDense *mat = (Mat_SeqDense*)mdn->A->data; 915dfbe8321SBarry Smith PetscErrorCode ierr; 91613f74950SBarry Smith PetscInt i,j; 917329f5518SBarry Smith PetscReal sum = 0.0; 91887828ca2SBarry Smith PetscScalar *v = mat->v; 9193501a2bdSLois Curfman McInnes 9203a40ed3dSBarry Smith PetscFunctionBegin; 9213501a2bdSLois Curfman McInnes if (mdn->size == 1) { 922064f8208SBarry Smith ierr = MatNorm(mdn->A,type,nrm);CHKERRQ(ierr); 9233501a2bdSLois Curfman McInnes } else { 9243501a2bdSLois Curfman McInnes if (type == NORM_FROBENIUS) { 925d0f46423SBarry Smith for (i=0; i<mdn->A->cmap->n*mdn->A->rmap->n; i++) { 926329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 9273501a2bdSLois Curfman McInnes } 928b2566f29SBarry Smith ierr = MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 9298f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 930dc0b31edSSatish Balay ierr = PetscLogFlops(2.0*mdn->A->cmap->n*mdn->A->rmap->n);CHKERRQ(ierr); 9313a40ed3dSBarry Smith } else if (type == NORM_1) { 932329f5518SBarry Smith PetscReal *tmp,*tmp2; 933dcca6d9dSJed Brown ierr = PetscMalloc2(A->cmap->N,&tmp,A->cmap->N,&tmp2);CHKERRQ(ierr); 93474ed9c26SBarry Smith ierr = PetscMemzero(tmp,A->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 93574ed9c26SBarry Smith ierr = PetscMemzero(tmp2,A->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 936064f8208SBarry Smith *nrm = 0.0; 9373501a2bdSLois Curfman McInnes v = mat->v; 938d0f46423SBarry Smith for (j=0; j<mdn->A->cmap->n; j++) { 939d0f46423SBarry Smith for (i=0; i<mdn->A->rmap->n; i++) { 94067e560aaSBarry Smith tmp[j] += PetscAbsScalar(*v); v++; 9413501a2bdSLois Curfman McInnes } 9423501a2bdSLois Curfman McInnes } 943b2566f29SBarry Smith ierr = MPIU_Allreduce(tmp,tmp2,A->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 944d0f46423SBarry Smith for (j=0; j<A->cmap->N; j++) { 945064f8208SBarry Smith if (tmp2[j] > *nrm) *nrm = tmp2[j]; 9463501a2bdSLois Curfman McInnes } 9478627564fSBarry Smith ierr = PetscFree2(tmp,tmp2);CHKERRQ(ierr); 948d0f46423SBarry Smith ierr = PetscLogFlops(A->cmap->n*A->rmap->n);CHKERRQ(ierr); 9493a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 950329f5518SBarry Smith PetscReal ntemp; 9513501a2bdSLois Curfman McInnes ierr = MatNorm(mdn->A,type,&ntemp);CHKERRQ(ierr); 952b2566f29SBarry Smith ierr = MPIU_Allreduce(&ntemp,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 953ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"No support for two norm"); 9543501a2bdSLois Curfman McInnes } 9553a40ed3dSBarry Smith PetscFunctionReturn(0); 9563501a2bdSLois Curfman McInnes } 9573501a2bdSLois Curfman McInnes 958fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIDense(Mat A,MatReuse reuse,Mat *matout) 9593501a2bdSLois Curfman McInnes { 9603501a2bdSLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 9613501a2bdSLois Curfman McInnes Mat_SeqDense *Aloc = (Mat_SeqDense*)a->A->data; 9623501a2bdSLois Curfman McInnes Mat B; 963d0f46423SBarry Smith PetscInt M = A->rmap->N,N = A->cmap->N,m,n,*rwork,rstart = A->rmap->rstart; 9646849ba73SBarry Smith PetscErrorCode ierr; 96513f74950SBarry Smith PetscInt j,i; 96687828ca2SBarry Smith PetscScalar *v; 9673501a2bdSLois Curfman McInnes 9683a40ed3dSBarry Smith PetscFunctionBegin; 969cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 970ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 971d0f46423SBarry Smith ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr); 9727adad957SLisandro Dalcin ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr); 9730298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(B,NULL);CHKERRQ(ierr); 974fc4dec0aSBarry Smith } else { 975fc4dec0aSBarry Smith B = *matout; 976fc4dec0aSBarry Smith } 9773501a2bdSLois Curfman McInnes 978d0f46423SBarry Smith m = a->A->rmap->n; n = a->A->cmap->n; v = Aloc->v; 979785e854fSJed Brown ierr = PetscMalloc1(m,&rwork);CHKERRQ(ierr); 9803501a2bdSLois Curfman McInnes for (i=0; i<m; i++) rwork[i] = rstart + i; 9811acff37aSSatish Balay for (j=0; j<n; j++) { 9823501a2bdSLois Curfman McInnes ierr = MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES);CHKERRQ(ierr); 9833501a2bdSLois Curfman McInnes v += m; 9843501a2bdSLois Curfman McInnes } 985606d414cSSatish Balay ierr = PetscFree(rwork);CHKERRQ(ierr); 9866d4a8577SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 9876d4a8577SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 988cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) { 9893501a2bdSLois Curfman McInnes *matout = B; 9903501a2bdSLois Curfman McInnes } else { 99128be2f97SBarry Smith ierr = MatHeaderMerge(A,&B);CHKERRQ(ierr); 9923501a2bdSLois Curfman McInnes } 9933a40ed3dSBarry Smith PetscFunctionReturn(0); 994096963f5SLois Curfman McInnes } 995096963f5SLois Curfman McInnes 99644cd7ae7SLois Curfman McInnes 9976849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat*); 998d84338a6SBarry Smith extern PetscErrorCode MatScale_MPIDense(Mat,PetscScalar); 9998965ea79SLois Curfman McInnes 10004994cf47SJed Brown PetscErrorCode MatSetUp_MPIDense(Mat A) 1001273d9f13SBarry Smith { 1002dfbe8321SBarry Smith PetscErrorCode ierr; 1003273d9f13SBarry Smith 1004273d9f13SBarry Smith PetscFunctionBegin; 1005273d9f13SBarry Smith ierr = MatMPIDenseSetPreallocation(A,0);CHKERRQ(ierr); 1006273d9f13SBarry Smith PetscFunctionReturn(0); 1007273d9f13SBarry Smith } 1008273d9f13SBarry Smith 1009488007eeSBarry Smith PetscErrorCode MatAXPY_MPIDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str) 1010488007eeSBarry Smith { 1011488007eeSBarry Smith PetscErrorCode ierr; 1012488007eeSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)Y->data, *B = (Mat_MPIDense*)X->data; 1013488007eeSBarry Smith 1014488007eeSBarry Smith PetscFunctionBegin; 1015488007eeSBarry Smith ierr = MatAXPY(A->A,alpha,B->A,str);CHKERRQ(ierr); 1016a3fa217bSJose E. Roman ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr); 1017488007eeSBarry Smith PetscFunctionReturn(0); 1018488007eeSBarry Smith } 1019488007eeSBarry Smith 10207087cfbeSBarry Smith PetscErrorCode MatConjugate_MPIDense(Mat mat) 1021ba337c44SJed Brown { 1022ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)mat->data; 1023ba337c44SJed Brown PetscErrorCode ierr; 1024ba337c44SJed Brown 1025ba337c44SJed Brown PetscFunctionBegin; 1026ba337c44SJed Brown ierr = MatConjugate(a->A);CHKERRQ(ierr); 1027ba337c44SJed Brown PetscFunctionReturn(0); 1028ba337c44SJed Brown } 1029ba337c44SJed Brown 1030ba337c44SJed Brown PetscErrorCode MatRealPart_MPIDense(Mat A) 1031ba337c44SJed Brown { 1032ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1033ba337c44SJed Brown PetscErrorCode ierr; 1034ba337c44SJed Brown 1035ba337c44SJed Brown PetscFunctionBegin; 1036ba337c44SJed Brown ierr = MatRealPart(a->A);CHKERRQ(ierr); 1037ba337c44SJed Brown PetscFunctionReturn(0); 1038ba337c44SJed Brown } 1039ba337c44SJed Brown 1040ba337c44SJed Brown PetscErrorCode MatImaginaryPart_MPIDense(Mat A) 1041ba337c44SJed Brown { 1042ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1043ba337c44SJed Brown PetscErrorCode ierr; 1044ba337c44SJed Brown 1045ba337c44SJed Brown PetscFunctionBegin; 1046ba337c44SJed Brown ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 1047ba337c44SJed Brown PetscFunctionReturn(0); 1048ba337c44SJed Brown } 1049ba337c44SJed Brown 105049a6ff4bSBarry Smith static PetscErrorCode MatGetColumnVector_MPIDense(Mat A,Vec v,PetscInt col) 105149a6ff4bSBarry Smith { 105249a6ff4bSBarry Smith PetscErrorCode ierr; 105349a6ff4bSBarry Smith PetscScalar *x; 105449a6ff4bSBarry Smith const PetscScalar *a; 105549a6ff4bSBarry Smith PetscInt lda; 105649a6ff4bSBarry Smith 105749a6ff4bSBarry Smith PetscFunctionBegin; 105849a6ff4bSBarry Smith if (A->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 105949a6ff4bSBarry Smith ierr = MatDenseGetLDA(A,&lda);CHKERRQ(ierr); 106049a6ff4bSBarry Smith ierr = MatDenseGetArrayRead(A,&a);CHKERRQ(ierr); 106149a6ff4bSBarry Smith ierr = VecGetArray(v,&x);CHKERRQ(ierr); 106249a6ff4bSBarry Smith ierr = PetscMemcpy(x,a+col*lda,A->rmap->n*sizeof(PetscScalar));CHKERRQ(ierr); 106349a6ff4bSBarry Smith ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 106449a6ff4bSBarry Smith ierr = MatDenseGetArrayRead(A,&a);CHKERRQ(ierr); 106549a6ff4bSBarry Smith PetscFunctionReturn(0); 106649a6ff4bSBarry Smith } 106749a6ff4bSBarry Smith 10680716a85fSBarry Smith extern PetscErrorCode MatGetColumnNorms_SeqDense(Mat,NormType,PetscReal*); 10690716a85fSBarry Smith PetscErrorCode MatGetColumnNorms_MPIDense(Mat A,NormType type,PetscReal *norms) 10700716a85fSBarry Smith { 10710716a85fSBarry Smith PetscErrorCode ierr; 10720716a85fSBarry Smith PetscInt i,n; 10730716a85fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*) A->data; 10740716a85fSBarry Smith PetscReal *work; 10750716a85fSBarry Smith 10760716a85fSBarry Smith PetscFunctionBegin; 10770298fd71SBarry Smith ierr = MatGetSize(A,NULL,&n);CHKERRQ(ierr); 1078785e854fSJed Brown ierr = PetscMalloc1(n,&work);CHKERRQ(ierr); 10790716a85fSBarry Smith ierr = MatGetColumnNorms_SeqDense(a->A,type,work);CHKERRQ(ierr); 10800716a85fSBarry Smith if (type == NORM_2) { 10810716a85fSBarry Smith for (i=0; i<n; i++) work[i] *= work[i]; 10820716a85fSBarry Smith } 10830716a85fSBarry Smith if (type == NORM_INFINITY) { 1084b2566f29SBarry Smith ierr = MPIU_Allreduce(work,norms,n,MPIU_REAL,MPIU_MAX,A->hdr.comm);CHKERRQ(ierr); 10850716a85fSBarry Smith } else { 1086b2566f29SBarry Smith ierr = MPIU_Allreduce(work,norms,n,MPIU_REAL,MPIU_SUM,A->hdr.comm);CHKERRQ(ierr); 10870716a85fSBarry Smith } 10880716a85fSBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 10890716a85fSBarry Smith if (type == NORM_2) { 10908f1a2a5eSBarry Smith for (i=0; i<n; i++) norms[i] = PetscSqrtReal(norms[i]); 10910716a85fSBarry Smith } 10920716a85fSBarry Smith PetscFunctionReturn(0); 10930716a85fSBarry Smith } 10940716a85fSBarry Smith 109573a71a0fSBarry Smith static PetscErrorCode MatSetRandom_MPIDense(Mat x,PetscRandom rctx) 109673a71a0fSBarry Smith { 109773a71a0fSBarry Smith Mat_MPIDense *d = (Mat_MPIDense*)x->data; 109873a71a0fSBarry Smith PetscErrorCode ierr; 109973a71a0fSBarry Smith PetscScalar *a; 110073a71a0fSBarry Smith PetscInt m,n,i; 110173a71a0fSBarry Smith 110273a71a0fSBarry Smith PetscFunctionBegin; 110373a71a0fSBarry Smith ierr = MatGetSize(d->A,&m,&n);CHKERRQ(ierr); 11048c778c55SBarry Smith ierr = MatDenseGetArray(d->A,&a);CHKERRQ(ierr); 110573a71a0fSBarry Smith for (i=0; i<m*n; i++) { 110673a71a0fSBarry Smith ierr = PetscRandomGetValue(rctx,a+i);CHKERRQ(ierr); 110773a71a0fSBarry Smith } 11088c778c55SBarry Smith ierr = MatDenseRestoreArray(d->A,&a);CHKERRQ(ierr); 110973a71a0fSBarry Smith PetscFunctionReturn(0); 111073a71a0fSBarry Smith } 111173a71a0fSBarry Smith 1112fd4e9aacSBarry Smith extern PetscErrorCode MatMatMultNumeric_MPIDense(Mat A,Mat,Mat); 1113fd4e9aacSBarry Smith 11143b49f96aSBarry Smith static PetscErrorCode MatMissingDiagonal_MPIDense(Mat A,PetscBool *missing,PetscInt *d) 11153b49f96aSBarry Smith { 11163b49f96aSBarry Smith PetscFunctionBegin; 11173b49f96aSBarry Smith *missing = PETSC_FALSE; 11183b49f96aSBarry Smith PetscFunctionReturn(0); 11193b49f96aSBarry Smith } 11203b49f96aSBarry Smith 1121cc48ffa7SToby Isaac static PetscErrorCode MatMatTransposeMult_MPIDense_MPIDense(Mat,Mat,MatReuse,PetscReal,Mat*); 1122cc48ffa7SToby Isaac static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat,Mat,PetscReal,Mat*); 1123cc48ffa7SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat,Mat,Mat); 1124cc48ffa7SToby Isaac 11258965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/ 112609dc0095SBarry Smith static struct _MatOps MatOps_Values = { MatSetValues_MPIDense, 112709dc0095SBarry Smith MatGetRow_MPIDense, 112809dc0095SBarry Smith MatRestoreRow_MPIDense, 112909dc0095SBarry Smith MatMult_MPIDense, 113097304618SKris Buschelman /* 4*/ MatMultAdd_MPIDense, 11317c922b88SBarry Smith MatMultTranspose_MPIDense, 11327c922b88SBarry Smith MatMultTransposeAdd_MPIDense, 11338965ea79SLois Curfman McInnes 0, 113409dc0095SBarry Smith 0, 113509dc0095SBarry Smith 0, 113697304618SKris Buschelman /* 10*/ 0, 113709dc0095SBarry Smith 0, 113809dc0095SBarry Smith 0, 113909dc0095SBarry Smith 0, 114009dc0095SBarry Smith MatTranspose_MPIDense, 114197304618SKris Buschelman /* 15*/ MatGetInfo_MPIDense, 11426e4ee0c6SHong Zhang MatEqual_MPIDense, 114309dc0095SBarry Smith MatGetDiagonal_MPIDense, 11445b2fa520SLois Curfman McInnes MatDiagonalScale_MPIDense, 114509dc0095SBarry Smith MatNorm_MPIDense, 114697304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPIDense, 114709dc0095SBarry Smith MatAssemblyEnd_MPIDense, 114809dc0095SBarry Smith MatSetOption_MPIDense, 114909dc0095SBarry Smith MatZeroEntries_MPIDense, 1150d519adbfSMatthew Knepley /* 24*/ MatZeroRows_MPIDense, 1151919b68f7SBarry Smith 0, 115201b82886SBarry Smith 0, 115301b82886SBarry Smith 0, 115401b82886SBarry Smith 0, 11554994cf47SJed Brown /* 29*/ MatSetUp_MPIDense, 1156273d9f13SBarry Smith 0, 115709dc0095SBarry Smith 0, 1158c56a70eeSBarry Smith MatGetDiagonalBlock_MPIDense, 11598c778c55SBarry Smith 0, 1160d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPIDense, 116109dc0095SBarry Smith 0, 116209dc0095SBarry Smith 0, 116309dc0095SBarry Smith 0, 116409dc0095SBarry Smith 0, 1165d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPIDense, 11667dae84e0SHong Zhang MatCreateSubMatrices_MPIDense, 116709dc0095SBarry Smith 0, 116809dc0095SBarry Smith MatGetValues_MPIDense, 116909dc0095SBarry Smith 0, 1170d519adbfSMatthew Knepley /* 44*/ 0, 117109dc0095SBarry Smith MatScale_MPIDense, 11727d68702bSBarry Smith MatShift_Basic, 117309dc0095SBarry Smith 0, 117409dc0095SBarry Smith 0, 117573a71a0fSBarry Smith /* 49*/ MatSetRandom_MPIDense, 117609dc0095SBarry Smith 0, 117709dc0095SBarry Smith 0, 117809dc0095SBarry Smith 0, 117909dc0095SBarry Smith 0, 1180d519adbfSMatthew Knepley /* 54*/ 0, 118109dc0095SBarry Smith 0, 118209dc0095SBarry Smith 0, 118309dc0095SBarry Smith 0, 118409dc0095SBarry Smith 0, 11857dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPIDense, 1186b9b97703SBarry Smith MatDestroy_MPIDense, 1187b9b97703SBarry Smith MatView_MPIDense, 1188357abbc8SBarry Smith 0, 118997304618SKris Buschelman 0, 1190d519adbfSMatthew Knepley /* 64*/ 0, 119197304618SKris Buschelman 0, 119297304618SKris Buschelman 0, 119397304618SKris Buschelman 0, 119497304618SKris Buschelman 0, 1195d519adbfSMatthew Knepley /* 69*/ 0, 119697304618SKris Buschelman 0, 119797304618SKris Buschelman 0, 119897304618SKris Buschelman 0, 119997304618SKris Buschelman 0, 1200d519adbfSMatthew Knepley /* 74*/ 0, 120197304618SKris Buschelman 0, 120297304618SKris Buschelman 0, 120397304618SKris Buschelman 0, 120497304618SKris Buschelman 0, 1205d519adbfSMatthew Knepley /* 79*/ 0, 120697304618SKris Buschelman 0, 120797304618SKris Buschelman 0, 120897304618SKris Buschelman 0, 12095bba2384SShri Abhyankar /* 83*/ MatLoad_MPIDense, 1210865e5f61SKris Buschelman 0, 1211865e5f61SKris Buschelman 0, 1212865e5f61SKris Buschelman 0, 1213865e5f61SKris Buschelman 0, 1214865e5f61SKris Buschelman 0, 12159775878aSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 1216320f2790SHong Zhang /* 89*/ MatMatMult_MPIDense_MPIDense, 1217320f2790SHong Zhang MatMatMultSymbolic_MPIDense_MPIDense, 12189775878aSHong Zhang #else 12199775878aSHong Zhang /* 89*/ 0, 1220865e5f61SKris Buschelman 0, 12219775878aSHong Zhang #endif 1222fd4e9aacSBarry Smith MatMatMultNumeric_MPIDense, 12232fbe02b9SBarry Smith 0, 1224ba337c44SJed Brown 0, 1225d519adbfSMatthew Knepley /* 94*/ 0, 1226cc48ffa7SToby Isaac MatMatTransposeMult_MPIDense_MPIDense, 1227cc48ffa7SToby Isaac MatMatTransposeMultSymbolic_MPIDense_MPIDense, 1228cc48ffa7SToby Isaac MatMatTransposeMultNumeric_MPIDense_MPIDense, 1229ba337c44SJed Brown 0, 1230ba337c44SJed Brown /* 99*/ 0, 1231ba337c44SJed Brown 0, 1232ba337c44SJed Brown 0, 1233ba337c44SJed Brown MatConjugate_MPIDense, 1234ba337c44SJed Brown 0, 1235ba337c44SJed Brown /*104*/ 0, 1236ba337c44SJed Brown MatRealPart_MPIDense, 1237ba337c44SJed Brown MatImaginaryPart_MPIDense, 123886d161a7SShri Abhyankar 0, 123986d161a7SShri Abhyankar 0, 124086d161a7SShri Abhyankar /*109*/ 0, 124186d161a7SShri Abhyankar 0, 124286d161a7SShri Abhyankar 0, 124349a6ff4bSBarry Smith MatGetColumnVector_MPIDense, 12443b49f96aSBarry Smith MatMissingDiagonal_MPIDense, 124586d161a7SShri Abhyankar /*114*/ 0, 124686d161a7SShri Abhyankar 0, 124786d161a7SShri Abhyankar 0, 124886d161a7SShri Abhyankar 0, 124986d161a7SShri Abhyankar 0, 125086d161a7SShri Abhyankar /*119*/ 0, 125186d161a7SShri Abhyankar 0, 125286d161a7SShri Abhyankar 0, 12530716a85fSBarry Smith 0, 12540716a85fSBarry Smith 0, 12550716a85fSBarry Smith /*124*/ 0, 12563964eb88SJed Brown MatGetColumnNorms_MPIDense, 12573964eb88SJed Brown 0, 12583964eb88SJed Brown 0, 12593964eb88SJed Brown 0, 12603964eb88SJed Brown /*129*/ 0, 1261cb20be35SHong Zhang MatTransposeMatMult_MPIDense_MPIDense, 1262cb20be35SHong Zhang MatTransposeMatMultSymbolic_MPIDense_MPIDense, 1263cb20be35SHong Zhang MatTransposeMatMultNumeric_MPIDense_MPIDense, 12643964eb88SJed Brown 0, 12653964eb88SJed Brown /*134*/ 0, 12663964eb88SJed Brown 0, 12673964eb88SJed Brown 0, 12683964eb88SJed Brown 0, 12693964eb88SJed Brown 0, 12703964eb88SJed Brown /*139*/ 0, 1271f9426fe0SMark Adams 0, 127294e2cb23SJakub Kruzik 0, 127394e2cb23SJakub Kruzik 0, 127494e2cb23SJakub Kruzik 0, 12751ae5eee8SJakub Kruzik /*144*/ MatCreateMPIMatConcatenateSeqMat_MPIDense 1276ba337c44SJed Brown }; 12778965ea79SLois Curfman McInnes 12787087cfbeSBarry Smith PetscErrorCode MatMPIDenseSetPreallocation_MPIDense(Mat mat,PetscScalar *data) 1279a23d5eceSKris Buschelman { 1280a23d5eceSKris Buschelman Mat_MPIDense *a; 1281dfbe8321SBarry Smith PetscErrorCode ierr; 1282a23d5eceSKris Buschelman 1283a23d5eceSKris Buschelman PetscFunctionBegin; 1284430ada49SBarry Smith if (mat->preallocated) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ARG_WRONGSTATE,"Matrix has already been preallocated"); 1285a23d5eceSKris Buschelman mat->preallocated = PETSC_TRUE; 1286a23d5eceSKris Buschelman /* Note: For now, when data is specified above, this assumes the user correctly 1287a23d5eceSKris Buschelman allocates the local dense storage space. We should add error checking. */ 1288a23d5eceSKris Buschelman 1289a23d5eceSKris Buschelman a = (Mat_MPIDense*)mat->data; 129034ef9618SShri Abhyankar ierr = PetscLayoutSetUp(mat->rmap);CHKERRQ(ierr); 129134ef9618SShri Abhyankar ierr = PetscLayoutSetUp(mat->cmap);CHKERRQ(ierr); 129234ef9618SShri Abhyankar a->nvec = mat->cmap->n; 129334ef9618SShri Abhyankar 1294f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&a->A);CHKERRQ(ierr); 1295d0f46423SBarry Smith ierr = MatSetSizes(a->A,mat->rmap->n,mat->cmap->N,mat->rmap->n,mat->cmap->N);CHKERRQ(ierr); 12965c5985e7SKris Buschelman ierr = MatSetType(a->A,MATSEQDENSE);CHKERRQ(ierr); 12975c5985e7SKris Buschelman ierr = MatSeqDenseSetPreallocation(a->A,data);CHKERRQ(ierr); 12983bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 1299a23d5eceSKris Buschelman PetscFunctionReturn(0); 1300a23d5eceSKris Buschelman } 1301a23d5eceSKris Buschelman 130265b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 1303cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIDense_Elemental(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 13048baccfbdSHong Zhang { 13058ea901baSHong Zhang Mat mat_elemental; 13068ea901baSHong Zhang PetscErrorCode ierr; 130732d7a744SHong Zhang PetscScalar *v; 130832d7a744SHong Zhang PetscInt m=A->rmap->n,N=A->cmap->N,rstart=A->rmap->rstart,i,*rows,*cols; 13098ea901baSHong Zhang 13108baccfbdSHong Zhang PetscFunctionBegin; 1311378336b6SHong Zhang if (reuse == MAT_REUSE_MATRIX) { 1312378336b6SHong Zhang mat_elemental = *newmat; 1313378336b6SHong Zhang ierr = MatZeroEntries(*newmat);CHKERRQ(ierr); 1314378336b6SHong Zhang } else { 1315378336b6SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental);CHKERRQ(ierr); 1316378336b6SHong Zhang ierr = MatSetSizes(mat_elemental,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 1317378336b6SHong Zhang ierr = MatSetType(mat_elemental,MATELEMENTAL);CHKERRQ(ierr); 1318378336b6SHong Zhang ierr = MatSetUp(mat_elemental);CHKERRQ(ierr); 131932d7a744SHong Zhang ierr = MatSetOption(mat_elemental,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 1320378336b6SHong Zhang } 1321378336b6SHong Zhang 132232d7a744SHong Zhang ierr = PetscMalloc2(m,&rows,N,&cols);CHKERRQ(ierr); 132332d7a744SHong Zhang for (i=0; i<N; i++) cols[i] = i; 132432d7a744SHong Zhang for (i=0; i<m; i++) rows[i] = rstart + i; 13258ea901baSHong Zhang 13268ea901baSHong Zhang /* PETSc-Elemental interaface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */ 132732d7a744SHong Zhang ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr); 132832d7a744SHong Zhang ierr = MatSetValues(mat_elemental,m,rows,N,cols,v,ADD_VALUES);CHKERRQ(ierr); 13298ea901baSHong Zhang ierr = MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 13308ea901baSHong Zhang ierr = MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 133132d7a744SHong Zhang ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr); 133232d7a744SHong Zhang ierr = PetscFree2(rows,cols);CHKERRQ(ierr); 13338ea901baSHong Zhang 1334511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 133528be2f97SBarry Smith ierr = MatHeaderReplace(A,&mat_elemental);CHKERRQ(ierr); 13368ea901baSHong Zhang } else { 13378ea901baSHong Zhang *newmat = mat_elemental; 13388ea901baSHong Zhang } 13398baccfbdSHong Zhang PetscFunctionReturn(0); 13408baccfbdSHong Zhang } 134165b80a83SHong Zhang #endif 13428baccfbdSHong Zhang 1343af53bab2SHong Zhang static PetscErrorCode MatDenseGetColumn_MPIDense(Mat A,PetscInt col,PetscScalar **vals) 134486aefd0dSHong Zhang { 134586aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 134686aefd0dSHong Zhang PetscErrorCode ierr; 134786aefd0dSHong Zhang 134886aefd0dSHong Zhang PetscFunctionBegin; 134986aefd0dSHong Zhang ierr = MatDenseGetColumn(mat->A,col,vals);CHKERRQ(ierr); 135086aefd0dSHong Zhang PetscFunctionReturn(0); 135186aefd0dSHong Zhang } 135286aefd0dSHong Zhang 1353af53bab2SHong Zhang static PetscErrorCode MatDenseRestoreColumn_MPIDense(Mat A,PetscScalar **vals) 135486aefd0dSHong Zhang { 135586aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 135686aefd0dSHong Zhang PetscErrorCode ierr; 135786aefd0dSHong Zhang 135886aefd0dSHong Zhang PetscFunctionBegin; 135986aefd0dSHong Zhang ierr = MatDenseRestoreColumn(mat->A,vals);CHKERRQ(ierr); 136086aefd0dSHong Zhang PetscFunctionReturn(0); 136186aefd0dSHong Zhang } 136286aefd0dSHong Zhang 136394e2cb23SJakub Kruzik PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIDense(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 136494e2cb23SJakub Kruzik { 136594e2cb23SJakub Kruzik PetscErrorCode ierr; 136694e2cb23SJakub Kruzik Mat_MPIDense *mat; 136794e2cb23SJakub Kruzik PetscInt m,nloc,N; 136894e2cb23SJakub Kruzik 136994e2cb23SJakub Kruzik PetscFunctionBegin; 137094e2cb23SJakub Kruzik ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr); 137194e2cb23SJakub Kruzik ierr = MatGetLocalSize(inmat,NULL,&nloc);CHKERRQ(ierr); 137294e2cb23SJakub Kruzik if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 137394e2cb23SJakub Kruzik PetscInt sum; 137494e2cb23SJakub Kruzik 137594e2cb23SJakub Kruzik if (n == PETSC_DECIDE) { 137694e2cb23SJakub Kruzik ierr = PetscSplitOwnership(comm,&n,&N);CHKERRQ(ierr); 137794e2cb23SJakub Kruzik } 137894e2cb23SJakub Kruzik /* Check sum(n) = N */ 137994e2cb23SJakub Kruzik ierr = MPIU_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 138094e2cb23SJakub Kruzik if (sum != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns %D != global columns %D",sum,N); 138194e2cb23SJakub Kruzik 138294e2cb23SJakub Kruzik ierr = MatCreateDense(comm,m,n,PETSC_DETERMINE,N,NULL,outmat);CHKERRQ(ierr); 138394e2cb23SJakub Kruzik } 138494e2cb23SJakub Kruzik 138594e2cb23SJakub Kruzik /* numeric phase */ 138694e2cb23SJakub Kruzik mat = (Mat_MPIDense*)(*outmat)->data; 138794e2cb23SJakub Kruzik ierr = MatCopy(inmat,mat->A,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 138894e2cb23SJakub Kruzik ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 138994e2cb23SJakub Kruzik ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 139094e2cb23SJakub Kruzik PetscFunctionReturn(0); 139194e2cb23SJakub Kruzik } 139294e2cb23SJakub Kruzik 13938cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIDense(Mat mat) 1394273d9f13SBarry Smith { 1395273d9f13SBarry Smith Mat_MPIDense *a; 1396dfbe8321SBarry Smith PetscErrorCode ierr; 1397273d9f13SBarry Smith 1398273d9f13SBarry Smith PetscFunctionBegin; 1399b00a9115SJed Brown ierr = PetscNewLog(mat,&a);CHKERRQ(ierr); 1400b0a32e0cSBarry Smith mat->data = (void*)a; 1401273d9f13SBarry Smith ierr = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1402273d9f13SBarry Smith 1403273d9f13SBarry Smith mat->insertmode = NOT_SET_VALUES; 1404ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&a->rank);CHKERRQ(ierr); 1405ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&a->size);CHKERRQ(ierr); 1406273d9f13SBarry Smith 1407273d9f13SBarry Smith /* build cache for off array entries formed */ 1408273d9f13SBarry Smith a->donotstash = PETSC_FALSE; 14092205254eSKarl Rupp 1410ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)mat),1,&mat->stash);CHKERRQ(ierr); 1411273d9f13SBarry Smith 1412273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 1413273d9f13SBarry Smith a->lvec = 0; 1414273d9f13SBarry Smith a->Mvctx = 0; 1415273d9f13SBarry Smith a->roworiented = PETSC_TRUE; 1416273d9f13SBarry Smith 141749a6ff4bSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",MatDenseGetLDA_MPIDense);CHKERRQ(ierr); 1418bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",MatDenseGetArray_MPIDense);CHKERRQ(ierr); 14198572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",MatDenseRestoreArray_MPIDense);CHKERRQ(ierr); 14208572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",MatDenseGetArrayRead_MPIDense);CHKERRQ(ierr); 14218572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",MatDenseRestoreArrayRead_MPIDense);CHKERRQ(ierr); 1422d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",MatDensePlaceArray_MPIDense);CHKERRQ(ierr); 1423d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",MatDenseResetArray_MPIDense);CHKERRQ(ierr); 14248baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 14258baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",MatConvert_MPIDense_Elemental);CHKERRQ(ierr); 14268baccfbdSHong Zhang #endif 1427bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",MatMPIDenseSetPreallocation_MPIDense);CHKERRQ(ierr); 1428bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMult_mpiaij_mpidense_C",MatMatMult_MPIAIJ_MPIDense);CHKERRQ(ierr); 1429bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultSymbolic_mpiaij_mpidense_C",MatMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr); 1430bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMatMultNumeric_mpiaij_mpidense_C",MatMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr); 14318949adfdSHong Zhang 14328949adfdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMult_mpiaij_mpidense_C",MatTransposeMatMult_MPIAIJ_MPIDense);CHKERRQ(ierr); 14338949adfdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultSymbolic_mpiaij_mpidense_C",MatTransposeMatMultSymbolic_MPIAIJ_MPIDense);CHKERRQ(ierr); 14348949adfdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatTransposeMatMultNumeric_mpiaij_mpidense_C",MatTransposeMatMultNumeric_MPIAIJ_MPIDense);CHKERRQ(ierr); 1435af53bab2SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",MatDenseGetColumn_MPIDense);CHKERRQ(ierr); 1436af53bab2SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",MatDenseRestoreColumn_MPIDense);CHKERRQ(ierr); 143738aed534SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)mat,MATMPIDENSE);CHKERRQ(ierr); 1438273d9f13SBarry Smith PetscFunctionReturn(0); 1439273d9f13SBarry Smith } 1440273d9f13SBarry Smith 1441209238afSKris Buschelman /*MC 1442002d173eSKris Buschelman MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices. 1443209238afSKris Buschelman 1444209238afSKris Buschelman This matrix type is identical to MATSEQDENSE when constructed with a single process communicator, 1445209238afSKris Buschelman and MATMPIDENSE otherwise. 1446209238afSKris Buschelman 1447209238afSKris Buschelman Options Database Keys: 1448209238afSKris Buschelman . -mat_type dense - sets the matrix type to "dense" during a call to MatSetFromOptions() 1449209238afSKris Buschelman 1450209238afSKris Buschelman Level: beginner 1451209238afSKris Buschelman 145201b82886SBarry Smith 1453209238afSKris Buschelman .seealso: MatCreateMPIDense,MATSEQDENSE,MATMPIDENSE 1454209238afSKris Buschelman M*/ 1455209238afSKris Buschelman 1456273d9f13SBarry Smith /*@C 1457273d9f13SBarry Smith MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries 1458273d9f13SBarry Smith 1459273d9f13SBarry Smith Not collective 1460273d9f13SBarry Smith 1461273d9f13SBarry Smith Input Parameters: 14621c4f3114SJed Brown . B - the matrix 14630298fd71SBarry Smith - data - optional location of matrix data. Set data=NULL for PETSc 1464273d9f13SBarry Smith to control all matrix memory allocation. 1465273d9f13SBarry Smith 1466273d9f13SBarry Smith Notes: 1467273d9f13SBarry Smith The dense format is fully compatible with standard Fortran 77 1468273d9f13SBarry Smith storage by columns. 1469273d9f13SBarry Smith 1470273d9f13SBarry Smith The data input variable is intended primarily for Fortran programmers 1471273d9f13SBarry Smith who wish to allocate their own matrix memory space. Most users should 14720298fd71SBarry Smith set data=NULL. 1473273d9f13SBarry Smith 1474273d9f13SBarry Smith Level: intermediate 1475273d9f13SBarry Smith 1476273d9f13SBarry Smith .keywords: matrix,dense, parallel 1477273d9f13SBarry Smith 1478273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 1479273d9f13SBarry Smith @*/ 14801c4f3114SJed Brown PetscErrorCode MatMPIDenseSetPreallocation(Mat B,PetscScalar *data) 1481273d9f13SBarry Smith { 14824ac538c5SBarry Smith PetscErrorCode ierr; 1483273d9f13SBarry Smith 1484273d9f13SBarry Smith PetscFunctionBegin; 14851c4f3114SJed Brown ierr = PetscTryMethod(B,"MatMPIDenseSetPreallocation_C",(Mat,PetscScalar*),(B,data));CHKERRQ(ierr); 1486273d9f13SBarry Smith PetscFunctionReturn(0); 1487273d9f13SBarry Smith } 1488273d9f13SBarry Smith 1489d3042a70SBarry Smith /*@ 1490d3042a70SBarry Smith MatDensePlaceArray - Allows one to replace the array in a dense array with an 1491d3042a70SBarry Smith array provided by the user. This is useful to avoid copying an array 1492d3042a70SBarry Smith into a matrix 1493d3042a70SBarry Smith 1494d3042a70SBarry Smith Not Collective 1495d3042a70SBarry Smith 1496d3042a70SBarry Smith Input Parameters: 1497d3042a70SBarry Smith + mat - the matrix 1498d3042a70SBarry Smith - array - the array in column major order 1499d3042a70SBarry Smith 1500d3042a70SBarry Smith Notes: 1501d3042a70SBarry Smith You can return to the original array with a call to MatDenseResetArray(). The user is responsible for freeing this array; it will not be 1502d3042a70SBarry Smith freed when the matrix is destroyed. 1503d3042a70SBarry Smith 1504d3042a70SBarry Smith Level: developer 1505d3042a70SBarry Smith 1506d3042a70SBarry Smith .seealso: MatDenseGetArray(), MatDenseResetArray(), VecPlaceArray(), VecGetArray(), VecRestoreArray(), VecReplaceArray(), VecResetArray() 1507d3042a70SBarry Smith 1508d3042a70SBarry Smith @*/ 1509d3042a70SBarry Smith PetscErrorCode MatDensePlaceArray(Mat mat,const PetscScalar array[]) 1510d3042a70SBarry Smith { 1511d3042a70SBarry Smith PetscErrorCode ierr; 1512d3042a70SBarry Smith PetscFunctionBegin; 1513d3042a70SBarry Smith ierr = PetscUseMethod(mat,"MatDensePlaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr); 1514d3042a70SBarry Smith ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 1515d3042a70SBarry Smith PetscFunctionReturn(0); 1516d3042a70SBarry Smith } 1517d3042a70SBarry Smith 1518d3042a70SBarry Smith /*@ 1519d3042a70SBarry Smith MatDenseResetArray - Resets the matrix array to that it previously had before the call to MatDensePlaceArray() 1520d3042a70SBarry Smith 1521d3042a70SBarry Smith Not Collective 1522d3042a70SBarry Smith 1523d3042a70SBarry Smith Input Parameters: 1524d3042a70SBarry Smith . mat - the matrix 1525d3042a70SBarry Smith 1526d3042a70SBarry Smith Notes: 1527d3042a70SBarry Smith You can only call this after a call to MatDensePlaceArray() 1528d3042a70SBarry Smith 1529d3042a70SBarry Smith Level: developer 1530d3042a70SBarry Smith 1531d3042a70SBarry Smith .seealso: MatDenseGetArray(), MatDensePlaceArray(), VecPlaceArray(), VecGetArray(), VecRestoreArray(), VecReplaceArray(), VecResetArray() 1532d3042a70SBarry Smith 1533d3042a70SBarry Smith @*/ 1534d3042a70SBarry Smith PetscErrorCode MatDenseResetArray(Mat mat) 1535d3042a70SBarry Smith { 1536d3042a70SBarry Smith PetscErrorCode ierr; 1537d3042a70SBarry Smith PetscFunctionBegin; 1538d3042a70SBarry Smith ierr = PetscUseMethod(mat,"MatDenseResetArray_C",(Mat),(mat));CHKERRQ(ierr); 1539d3042a70SBarry Smith ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 1540d3042a70SBarry Smith PetscFunctionReturn(0); 1541d3042a70SBarry Smith } 1542d3042a70SBarry Smith 15438965ea79SLois Curfman McInnes /*@C 154469b1f4b7SBarry Smith MatCreateDense - Creates a parallel matrix in dense format. 15458965ea79SLois Curfman McInnes 1546db81eaa0SLois Curfman McInnes Collective on MPI_Comm 1547db81eaa0SLois Curfman McInnes 15488965ea79SLois Curfman McInnes Input Parameters: 1549db81eaa0SLois Curfman McInnes + comm - MPI communicator 15508965ea79SLois Curfman McInnes . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 1551db81eaa0SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 15528965ea79SLois Curfman McInnes . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 1553db81eaa0SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 15546cfe35ddSJose E. Roman - data - optional location of matrix data. Set data=NULL (PETSC_NULL_SCALAR for Fortran users) for PETSc 1555dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 15568965ea79SLois Curfman McInnes 15578965ea79SLois Curfman McInnes Output Parameter: 1558477f1c0bSLois Curfman McInnes . A - the matrix 15598965ea79SLois Curfman McInnes 1560b259b22eSLois Curfman McInnes Notes: 156139ddd567SLois Curfman McInnes The dense format is fully compatible with standard Fortran 77 156239ddd567SLois Curfman McInnes storage by columns. 15638965ea79SLois Curfman McInnes 156418f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 156518f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 15666cfe35ddSJose E. Roman set data=NULL (PETSC_NULL_SCALAR for Fortran users). 156718f449edSLois Curfman McInnes 15688965ea79SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 15698965ea79SLois Curfman McInnes (possibly both). 15708965ea79SLois Curfman McInnes 1571027ccd11SLois Curfman McInnes Level: intermediate 1572027ccd11SLois Curfman McInnes 157339ddd567SLois Curfman McInnes .keywords: matrix,dense, parallel 15748965ea79SLois Curfman McInnes 157539ddd567SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 15768965ea79SLois Curfman McInnes @*/ 157769b1f4b7SBarry Smith PetscErrorCode MatCreateDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 15788965ea79SLois Curfman McInnes { 15796849ba73SBarry Smith PetscErrorCode ierr; 158013f74950SBarry Smith PetscMPIInt size; 15818965ea79SLois Curfman McInnes 15823a40ed3dSBarry Smith PetscFunctionBegin; 1583f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 1584f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 1585273d9f13SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1586273d9f13SBarry Smith if (size > 1) { 1587273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIDENSE);CHKERRQ(ierr); 1588273d9f13SBarry Smith ierr = MatMPIDenseSetPreallocation(*A,data);CHKERRQ(ierr); 15896cfe35ddSJose E. Roman if (data) { /* user provided data array, so no need to assemble */ 15906cfe35ddSJose E. Roman ierr = MatSetUpMultiply_MPIDense(*A);CHKERRQ(ierr); 15916cfe35ddSJose E. Roman (*A)->assembled = PETSC_TRUE; 15926cfe35ddSJose E. Roman } 1593273d9f13SBarry Smith } else { 1594273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr); 1595273d9f13SBarry Smith ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr); 15968c469469SLois Curfman McInnes } 15973a40ed3dSBarry Smith PetscFunctionReturn(0); 15988965ea79SLois Curfman McInnes } 15998965ea79SLois Curfman McInnes 16006849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat) 16018965ea79SLois Curfman McInnes { 16028965ea79SLois Curfman McInnes Mat mat; 16033501a2bdSLois Curfman McInnes Mat_MPIDense *a,*oldmat = (Mat_MPIDense*)A->data; 1604dfbe8321SBarry Smith PetscErrorCode ierr; 16058965ea79SLois Curfman McInnes 16063a40ed3dSBarry Smith PetscFunctionBegin; 16078965ea79SLois Curfman McInnes *newmat = 0; 1608ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&mat);CHKERRQ(ierr); 1609d0f46423SBarry Smith ierr = MatSetSizes(mat,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 16107adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)A)->type_name);CHKERRQ(ierr); 1611834f8fabSBarry Smith a = (Mat_MPIDense*)mat->data; 16125aa7edbeSHong Zhang 1613d5f3da31SBarry Smith mat->factortype = A->factortype; 1614c456f294SBarry Smith mat->assembled = PETSC_TRUE; 1615273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 16168965ea79SLois Curfman McInnes 16178965ea79SLois Curfman McInnes a->size = oldmat->size; 16188965ea79SLois Curfman McInnes a->rank = oldmat->rank; 1619e0fa3b82SLois Curfman McInnes mat->insertmode = NOT_SET_VALUES; 1620b9b97703SBarry Smith a->nvec = oldmat->nvec; 16213782ba37SSatish Balay a->donotstash = oldmat->donotstash; 1622e04c1aa4SHong Zhang 16231e1e43feSBarry Smith ierr = PetscLayoutReference(A->rmap,&mat->rmap);CHKERRQ(ierr); 16241e1e43feSBarry Smith ierr = PetscLayoutReference(A->cmap,&mat->cmap);CHKERRQ(ierr); 16258965ea79SLois Curfman McInnes 1626329f5518SBarry Smith ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 16275609ef8eSBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 16283bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 162901b82886SBarry Smith 16308965ea79SLois Curfman McInnes *newmat = mat; 16313a40ed3dSBarry Smith PetscFunctionReturn(0); 16328965ea79SLois Curfman McInnes } 16338965ea79SLois Curfman McInnes 16349d36ed5fSBarry Smith PetscErrorCode MatLoad_MPIDense_DenseInFile(MPI_Comm comm,PetscInt fd,PetscInt M,PetscInt N,Mat newmat) 163586d161a7SShri Abhyankar { 163686d161a7SShri Abhyankar PetscErrorCode ierr; 163786d161a7SShri Abhyankar PetscMPIInt rank,size; 163874c13d95SBarry Smith const PetscInt *rowners; 163974c13d95SBarry Smith PetscInt i,m,n,nz,j,mMax; 164086d161a7SShri Abhyankar PetscScalar *array,*vals,*vals_ptr; 16419d36ed5fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)newmat->data; 164286d161a7SShri Abhyankar 164386d161a7SShri Abhyankar PetscFunctionBegin; 164486d161a7SShri Abhyankar ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 164586d161a7SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 164686d161a7SShri Abhyankar 164774c13d95SBarry Smith /* determine ownership of rows and columns */ 164874c13d95SBarry Smith m = (newmat->rmap->n < 0) ? PETSC_DECIDE : newmat->rmap->n; 164974c13d95SBarry Smith n = (newmat->cmap->n < 0) ? PETSC_DECIDE : newmat->cmap->n; 165086d161a7SShri Abhyankar 165174c13d95SBarry Smith ierr = MatSetSizes(newmat,m,n,M,N);CHKERRQ(ierr); 1652430ada49SBarry Smith if (!a->A) { 16530298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr); 16549d36ed5fSBarry Smith } 16558c778c55SBarry Smith ierr = MatDenseGetArray(newmat,&array);CHKERRQ(ierr); 165649467e7dSBarry Smith ierr = MatGetLocalSize(newmat,&m,NULL);CHKERRQ(ierr); 165774c13d95SBarry Smith ierr = MatGetOwnershipRanges(newmat,&rowners);CHKERRQ(ierr); 1658396e826eSBarry Smith ierr = MPI_Reduce(&m,&mMax,1,MPIU_INT,MPI_MAX,0,comm);CHKERRQ(ierr); 165986d161a7SShri Abhyankar if (!rank) { 16609d36ed5fSBarry Smith ierr = PetscMalloc1(mMax*N,&vals);CHKERRQ(ierr); 166186d161a7SShri Abhyankar 166286d161a7SShri Abhyankar /* read in my part of the matrix numerical values */ 1663*9860990eSLisandro Dalcin ierr = PetscBinaryRead(fd,vals,m*N,NULL,PETSC_SCALAR);CHKERRQ(ierr); 166486d161a7SShri Abhyankar 166586d161a7SShri Abhyankar /* insert into matrix-by row (this is why cannot directly read into array */ 166686d161a7SShri Abhyankar vals_ptr = vals; 166786d161a7SShri Abhyankar for (i=0; i<m; i++) { 166886d161a7SShri Abhyankar for (j=0; j<N; j++) { 166986d161a7SShri Abhyankar array[i + j*m] = *vals_ptr++; 167086d161a7SShri Abhyankar } 167186d161a7SShri Abhyankar } 167286d161a7SShri Abhyankar 167386d161a7SShri Abhyankar /* read in other processors and ship out */ 167486d161a7SShri Abhyankar for (i=1; i<size; i++) { 167586d161a7SShri Abhyankar nz = (rowners[i+1] - rowners[i])*N; 1676*9860990eSLisandro Dalcin ierr = PetscBinaryRead(fd,vals,nz,NULL,PETSC_SCALAR);CHKERRQ(ierr); 1677a25532f0SBarry Smith ierr = MPIULong_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)(newmat))->tag,comm);CHKERRQ(ierr); 167886d161a7SShri Abhyankar } 167986d161a7SShri Abhyankar } else { 168086d161a7SShri Abhyankar /* receive numeric values */ 1681785e854fSJed Brown ierr = PetscMalloc1(m*N,&vals);CHKERRQ(ierr); 168286d161a7SShri Abhyankar 168386d161a7SShri Abhyankar /* receive message of values*/ 1684a25532f0SBarry Smith ierr = MPIULong_Recv(vals,m*N,MPIU_SCALAR,0,((PetscObject)(newmat))->tag,comm);CHKERRQ(ierr); 168586d161a7SShri Abhyankar 168686d161a7SShri Abhyankar /* insert into matrix-by row (this is why cannot directly read into array */ 168786d161a7SShri Abhyankar vals_ptr = vals; 168886d161a7SShri Abhyankar for (i=0; i<m; i++) { 168986d161a7SShri Abhyankar for (j=0; j<N; j++) { 169086d161a7SShri Abhyankar array[i + j*m] = *vals_ptr++; 169186d161a7SShri Abhyankar } 169286d161a7SShri Abhyankar } 169386d161a7SShri Abhyankar } 16948c778c55SBarry Smith ierr = MatDenseRestoreArray(newmat,&array);CHKERRQ(ierr); 169586d161a7SShri Abhyankar ierr = PetscFree(vals);CHKERRQ(ierr); 169686d161a7SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 169786d161a7SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 169886d161a7SShri Abhyankar PetscFunctionReturn(0); 169986d161a7SShri Abhyankar } 170086d161a7SShri Abhyankar 1701112444f4SShri Abhyankar PetscErrorCode MatLoad_MPIDense(Mat newmat,PetscViewer viewer) 170286d161a7SShri Abhyankar { 1703dfdea288SBarry Smith Mat_MPIDense *a; 170486d161a7SShri Abhyankar PetscScalar *vals,*svals; 1705ce94432eSBarry Smith MPI_Comm comm; 170686d161a7SShri Abhyankar MPI_Status status; 170749467e7dSBarry Smith PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag,*rowners,*sndcounts,m,n,maxnz; 170886d161a7SShri Abhyankar PetscInt header[4],*rowlengths = 0,M,N,*cols; 170949467e7dSBarry Smith PetscInt *ourlens,*procsnz = 0,jj,*mycols,*smycols; 17109d36ed5fSBarry Smith PetscInt i,nz,j,rstart,rend; 171186d161a7SShri Abhyankar int fd; 17127f489da9SVaclav Hapla PetscBool isbinary; 171386d161a7SShri Abhyankar PetscErrorCode ierr; 171486d161a7SShri Abhyankar 171586d161a7SShri Abhyankar PetscFunctionBegin; 17167f489da9SVaclav Hapla ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 17177f489da9SVaclav Hapla if (!isbinary) SETERRQ2(PetscObjectComm((PetscObject)newmat),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)newmat)->type_name); 17187f489da9SVaclav Hapla 1719c98fd787SBarry Smith /* force binary viewer to load .info file if it has not yet done so */ 1720c98fd787SBarry Smith ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr); 1721ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr); 172286d161a7SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 172386d161a7SShri Abhyankar ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 172486d161a7SShri Abhyankar ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 17255872f025SBarry Smith if (!rank) { 1726*9860990eSLisandro Dalcin ierr = PetscBinaryRead(fd,(char*)header,4,NULL,PETSC_INT);CHKERRQ(ierr); 172786d161a7SShri Abhyankar if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 172886d161a7SShri Abhyankar } 172986d161a7SShri Abhyankar ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 173086d161a7SShri Abhyankar M = header[1]; N = header[2]; nz = header[3]; 173186d161a7SShri Abhyankar 173286d161a7SShri Abhyankar /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */ 17339d36ed5fSBarry Smith if (newmat->rmap->N < 0) newmat->rmap->N = M; 17349d36ed5fSBarry Smith if (newmat->cmap->N < 0) newmat->cmap->N = N; 173586d161a7SShri Abhyankar 17369d36ed5fSBarry Smith if (newmat->rmap->N != M) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%D) and input matrix has (%D)",M,newmat->rmap->N); 17379d36ed5fSBarry Smith if (newmat->cmap->N != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%D) and input matrix has (%D)",N,newmat->cmap->N); 173886d161a7SShri Abhyankar 173986d161a7SShri Abhyankar /* 174086d161a7SShri Abhyankar Handle case where matrix is stored on disk as a dense matrix 174186d161a7SShri Abhyankar */ 174286d161a7SShri Abhyankar if (nz == MATRIX_BINARY_FORMAT_DENSE) { 17439d36ed5fSBarry Smith ierr = MatLoad_MPIDense_DenseInFile(comm,fd,M,N,newmat);CHKERRQ(ierr); 174486d161a7SShri Abhyankar PetscFunctionReturn(0); 174586d161a7SShri Abhyankar } 174686d161a7SShri Abhyankar 174786d161a7SShri Abhyankar /* determine ownership of all rows */ 17482205254eSKarl Rupp if (newmat->rmap->n < 0) { 17492205254eSKarl Rupp ierr = PetscMPIIntCast(M/size + ((M % size) > rank),&m);CHKERRQ(ierr); 17502205254eSKarl Rupp } else { 17512205254eSKarl Rupp ierr = PetscMPIIntCast(newmat->rmap->n,&m);CHKERRQ(ierr); 17522205254eSKarl Rupp } 175349467e7dSBarry Smith if (newmat->cmap->n < 0) { 175449467e7dSBarry Smith n = PETSC_DECIDE; 175549467e7dSBarry Smith } else { 175649467e7dSBarry Smith ierr = PetscMPIIntCast(newmat->cmap->n,&n);CHKERRQ(ierr); 175749467e7dSBarry Smith } 175849467e7dSBarry Smith 1759854ce69bSBarry Smith ierr = PetscMalloc1(size+2,&rowners);CHKERRQ(ierr); 176086d161a7SShri Abhyankar ierr = MPI_Allgather(&m,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 176186d161a7SShri Abhyankar rowners[0] = 0; 176286d161a7SShri Abhyankar for (i=2; i<=size; i++) { 176386d161a7SShri Abhyankar rowners[i] += rowners[i-1]; 176486d161a7SShri Abhyankar } 176586d161a7SShri Abhyankar rstart = rowners[rank]; 176686d161a7SShri Abhyankar rend = rowners[rank+1]; 176786d161a7SShri Abhyankar 176886d161a7SShri Abhyankar /* distribute row lengths to all processors */ 176949467e7dSBarry Smith ierr = PetscMalloc1(rend-rstart,&ourlens);CHKERRQ(ierr); 177086d161a7SShri Abhyankar if (!rank) { 1771785e854fSJed Brown ierr = PetscMalloc1(M,&rowlengths);CHKERRQ(ierr); 1772*9860990eSLisandro Dalcin ierr = PetscBinaryRead(fd,rowlengths,M,NULL,PETSC_INT);CHKERRQ(ierr); 1773785e854fSJed Brown ierr = PetscMalloc1(size,&sndcounts);CHKERRQ(ierr); 177486d161a7SShri Abhyankar for (i=0; i<size; i++) sndcounts[i] = rowners[i+1] - rowners[i]; 177586d161a7SShri Abhyankar ierr = MPI_Scatterv(rowlengths,sndcounts,rowners,MPIU_INT,ourlens,rend-rstart,MPIU_INT,0,comm);CHKERRQ(ierr); 177686d161a7SShri Abhyankar ierr = PetscFree(sndcounts);CHKERRQ(ierr); 177786d161a7SShri Abhyankar } else { 177886d161a7SShri Abhyankar ierr = MPI_Scatterv(0,0,0,MPIU_INT,ourlens,rend-rstart,MPIU_INT,0,comm);CHKERRQ(ierr); 177986d161a7SShri Abhyankar } 178086d161a7SShri Abhyankar 178186d161a7SShri Abhyankar if (!rank) { 178286d161a7SShri Abhyankar /* calculate the number of nonzeros on each processor */ 1783785e854fSJed Brown ierr = PetscMalloc1(size,&procsnz);CHKERRQ(ierr); 178486d161a7SShri Abhyankar ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 178586d161a7SShri Abhyankar for (i=0; i<size; i++) { 178686d161a7SShri Abhyankar for (j=rowners[i]; j< rowners[i+1]; j++) { 178786d161a7SShri Abhyankar procsnz[i] += rowlengths[j]; 178886d161a7SShri Abhyankar } 178986d161a7SShri Abhyankar } 179086d161a7SShri Abhyankar ierr = PetscFree(rowlengths);CHKERRQ(ierr); 179186d161a7SShri Abhyankar 179286d161a7SShri Abhyankar /* determine max buffer needed and allocate it */ 179386d161a7SShri Abhyankar maxnz = 0; 179486d161a7SShri Abhyankar for (i=0; i<size; i++) { 179586d161a7SShri Abhyankar maxnz = PetscMax(maxnz,procsnz[i]); 179686d161a7SShri Abhyankar } 1797785e854fSJed Brown ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr); 179886d161a7SShri Abhyankar 179986d161a7SShri Abhyankar /* read in my part of the matrix column indices */ 180086d161a7SShri Abhyankar nz = procsnz[0]; 1801785e854fSJed Brown ierr = PetscMalloc1(nz,&mycols);CHKERRQ(ierr); 1802*9860990eSLisandro Dalcin ierr = PetscBinaryRead(fd,mycols,nz,NULL,PETSC_INT);CHKERRQ(ierr); 180386d161a7SShri Abhyankar 180486d161a7SShri Abhyankar /* read in every one elses and ship off */ 180586d161a7SShri Abhyankar for (i=1; i<size; i++) { 180686d161a7SShri Abhyankar nz = procsnz[i]; 1807*9860990eSLisandro Dalcin ierr = PetscBinaryRead(fd,cols,nz,NULL,PETSC_INT);CHKERRQ(ierr); 180886d161a7SShri Abhyankar ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 180986d161a7SShri Abhyankar } 181086d161a7SShri Abhyankar ierr = PetscFree(cols);CHKERRQ(ierr); 181186d161a7SShri Abhyankar } else { 181286d161a7SShri Abhyankar /* determine buffer space needed for message */ 181386d161a7SShri Abhyankar nz = 0; 181486d161a7SShri Abhyankar for (i=0; i<m; i++) { 181586d161a7SShri Abhyankar nz += ourlens[i]; 181686d161a7SShri Abhyankar } 1817854ce69bSBarry Smith ierr = PetscMalloc1(nz+1,&mycols);CHKERRQ(ierr); 181886d161a7SShri Abhyankar 181986d161a7SShri Abhyankar /* receive message of column indices*/ 182086d161a7SShri Abhyankar ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 182186d161a7SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 182286d161a7SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 182386d161a7SShri Abhyankar } 182486d161a7SShri Abhyankar 182549467e7dSBarry Smith ierr = MatSetSizes(newmat,m,n,M,N);CHKERRQ(ierr); 1826dfdea288SBarry Smith a = (Mat_MPIDense*)newmat->data; 1827430ada49SBarry Smith if (!a->A) { 18280298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr); 1829dfdea288SBarry Smith } 183086d161a7SShri Abhyankar 183186d161a7SShri Abhyankar if (!rank) { 1832785e854fSJed Brown ierr = PetscMalloc1(maxnz,&vals);CHKERRQ(ierr); 183386d161a7SShri Abhyankar 183486d161a7SShri Abhyankar /* read in my part of the matrix numerical values */ 183586d161a7SShri Abhyankar nz = procsnz[0]; 1836*9860990eSLisandro Dalcin ierr = PetscBinaryRead(fd,vals,nz,NULL,PETSC_SCALAR);CHKERRQ(ierr); 183786d161a7SShri Abhyankar 183886d161a7SShri Abhyankar /* insert into matrix */ 183986d161a7SShri Abhyankar jj = rstart; 184086d161a7SShri Abhyankar smycols = mycols; 184186d161a7SShri Abhyankar svals = vals; 184286d161a7SShri Abhyankar for (i=0; i<m; i++) { 184386d161a7SShri Abhyankar ierr = MatSetValues(newmat,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 184486d161a7SShri Abhyankar smycols += ourlens[i]; 184586d161a7SShri Abhyankar svals += ourlens[i]; 184686d161a7SShri Abhyankar jj++; 184786d161a7SShri Abhyankar } 184886d161a7SShri Abhyankar 184986d161a7SShri Abhyankar /* read in other processors and ship out */ 185086d161a7SShri Abhyankar for (i=1; i<size; i++) { 185186d161a7SShri Abhyankar nz = procsnz[i]; 1852*9860990eSLisandro Dalcin ierr = PetscBinaryRead(fd,vals,nz,NULL,PETSC_SCALAR);CHKERRQ(ierr); 185386d161a7SShri Abhyankar ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 185486d161a7SShri Abhyankar } 185586d161a7SShri Abhyankar ierr = PetscFree(procsnz);CHKERRQ(ierr); 185686d161a7SShri Abhyankar } else { 185786d161a7SShri Abhyankar /* receive numeric values */ 1858854ce69bSBarry Smith ierr = PetscMalloc1(nz+1,&vals);CHKERRQ(ierr); 185986d161a7SShri Abhyankar 186086d161a7SShri Abhyankar /* receive message of values*/ 186186d161a7SShri Abhyankar ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr); 186286d161a7SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 186386d161a7SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 186486d161a7SShri Abhyankar 186586d161a7SShri Abhyankar /* insert into matrix */ 186686d161a7SShri Abhyankar jj = rstart; 186786d161a7SShri Abhyankar smycols = mycols; 186886d161a7SShri Abhyankar svals = vals; 186986d161a7SShri Abhyankar for (i=0; i<m; i++) { 187086d161a7SShri Abhyankar ierr = MatSetValues(newmat,1,&jj,ourlens[i],smycols,svals,INSERT_VALUES);CHKERRQ(ierr); 187186d161a7SShri Abhyankar smycols += ourlens[i]; 187286d161a7SShri Abhyankar svals += ourlens[i]; 187386d161a7SShri Abhyankar jj++; 187486d161a7SShri Abhyankar } 187586d161a7SShri Abhyankar } 187649467e7dSBarry Smith ierr = PetscFree(ourlens);CHKERRQ(ierr); 187786d161a7SShri Abhyankar ierr = PetscFree(vals);CHKERRQ(ierr); 187886d161a7SShri Abhyankar ierr = PetscFree(mycols);CHKERRQ(ierr); 187986d161a7SShri Abhyankar ierr = PetscFree(rowners);CHKERRQ(ierr); 188086d161a7SShri Abhyankar 188186d161a7SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 188286d161a7SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 188386d161a7SShri Abhyankar PetscFunctionReturn(0); 188486d161a7SShri Abhyankar } 188586d161a7SShri Abhyankar 1886ace3abfcSBarry Smith PetscErrorCode MatEqual_MPIDense(Mat A,Mat B,PetscBool *flag) 18876e4ee0c6SHong Zhang { 18886e4ee0c6SHong Zhang Mat_MPIDense *matB = (Mat_MPIDense*)B->data,*matA = (Mat_MPIDense*)A->data; 18896e4ee0c6SHong Zhang Mat a,b; 1890ace3abfcSBarry Smith PetscBool flg; 18916e4ee0c6SHong Zhang PetscErrorCode ierr; 189290ace30eSBarry Smith 18936e4ee0c6SHong Zhang PetscFunctionBegin; 18946e4ee0c6SHong Zhang a = matA->A; 18956e4ee0c6SHong Zhang b = matB->A; 18966e4ee0c6SHong Zhang ierr = MatEqual(a,b,&flg);CHKERRQ(ierr); 1897b2566f29SBarry Smith ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 18986e4ee0c6SHong Zhang PetscFunctionReturn(0); 18996e4ee0c6SHong Zhang } 190090ace30eSBarry Smith 1901baa3c1c6SHong Zhang PetscErrorCode MatDestroy_MatTransMatMult_MPIDense_MPIDense(Mat A) 1902baa3c1c6SHong Zhang { 1903baa3c1c6SHong Zhang PetscErrorCode ierr; 1904baa3c1c6SHong Zhang Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1905baa3c1c6SHong Zhang Mat_TransMatMultDense *atb = a->atbdense; 1906baa3c1c6SHong Zhang 1907baa3c1c6SHong Zhang PetscFunctionBegin; 1908c5ef1628SHong Zhang ierr = PetscFree3(atb->sendbuf,atb->atbarray,atb->recvcounts);CHKERRQ(ierr); 1909baa3c1c6SHong Zhang ierr = (atb->destroy)(A);CHKERRQ(ierr); 1910baa3c1c6SHong Zhang ierr = PetscFree(atb);CHKERRQ(ierr); 1911baa3c1c6SHong Zhang PetscFunctionReturn(0); 1912baa3c1c6SHong Zhang } 1913baa3c1c6SHong Zhang 1914cc48ffa7SToby Isaac PetscErrorCode MatDestroy_MatMatTransMult_MPIDense_MPIDense(Mat A) 1915cc48ffa7SToby Isaac { 1916cc48ffa7SToby Isaac PetscErrorCode ierr; 1917cc48ffa7SToby Isaac Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1918cc48ffa7SToby Isaac Mat_MatTransMultDense *abt = a->abtdense; 1919cc48ffa7SToby Isaac 1920cc48ffa7SToby Isaac PetscFunctionBegin; 1921cc48ffa7SToby Isaac ierr = PetscFree2(abt->buf[0],abt->buf[1]);CHKERRQ(ierr); 1922faa55883SToby Isaac ierr = PetscFree2(abt->recvcounts,abt->recvdispls);CHKERRQ(ierr); 1923cc48ffa7SToby Isaac ierr = (abt->destroy)(A);CHKERRQ(ierr); 1924cc48ffa7SToby Isaac ierr = PetscFree(abt);CHKERRQ(ierr); 1925cc48ffa7SToby Isaac PetscFunctionReturn(0); 1926cc48ffa7SToby Isaac } 1927cc48ffa7SToby Isaac 1928cb20be35SHong Zhang PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 1929cb20be35SHong Zhang { 1930baa3c1c6SHong Zhang Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 1931660d5466SHong Zhang Mat_SeqDense *aseq=(Mat_SeqDense*)(a->A)->data, *bseq=(Mat_SeqDense*)(b->A)->data; 1932baa3c1c6SHong Zhang Mat_TransMatMultDense *atb = c->atbdense; 1933cb20be35SHong Zhang PetscErrorCode ierr; 1934cb20be35SHong Zhang MPI_Comm comm; 1935d5017740SHong Zhang PetscMPIInt rank,size,*recvcounts=atb->recvcounts; 1936c5ef1628SHong Zhang PetscScalar *carray,*atbarray=atb->atbarray,*sendbuf=atb->sendbuf; 1937d5017740SHong Zhang PetscInt i,cN=C->cmap->N,cM=C->rmap->N,proc,k,j; 1938660d5466SHong Zhang PetscScalar _DOne=1.0,_DZero=0.0; 1939adc7a786SHong Zhang PetscBLASInt am,an,bn,aN; 1940e68c0b26SHong Zhang const PetscInt *ranges; 1941cb20be35SHong Zhang 1942cb20be35SHong Zhang PetscFunctionBegin; 1943cb20be35SHong Zhang ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 1944cb20be35SHong Zhang ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 1945cb20be35SHong Zhang ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1946e68c0b26SHong Zhang 1947c5ef1628SHong Zhang /* compute atbarray = aseq^T * bseq */ 1948660d5466SHong Zhang ierr = PetscBLASIntCast(a->A->cmap->n,&an);CHKERRQ(ierr); 1949660d5466SHong Zhang ierr = PetscBLASIntCast(b->A->cmap->n,&bn);CHKERRQ(ierr); 1950660d5466SHong Zhang ierr = PetscBLASIntCast(a->A->rmap->n,&am);CHKERRQ(ierr); 1951adc7a786SHong Zhang ierr = PetscBLASIntCast(A->cmap->N,&aN);CHKERRQ(ierr); 1952adc7a786SHong Zhang PetscStackCallBLAS("BLASgemm",BLASgemm_("T","N",&an,&bn,&am,&_DOne,aseq->v,&aseq->lda,bseq->v,&bseq->lda,&_DZero,atbarray,&aN)); 1953cb20be35SHong Zhang 1954cb20be35SHong Zhang ierr = MatGetOwnershipRanges(C,&ranges);CHKERRQ(ierr); 1955c5ef1628SHong Zhang for (i=0; i<size; i++) recvcounts[i] = (ranges[i+1] - ranges[i])*cN; 1956cb20be35SHong Zhang 1957660d5466SHong Zhang /* arrange atbarray into sendbuf */ 1958cb20be35SHong Zhang k = 0; 1959cb20be35SHong Zhang for (proc=0; proc<size; proc++) { 1960baa3c1c6SHong Zhang for (j=0; j<cN; j++) { 1961c5ef1628SHong Zhang for (i=ranges[proc]; i<ranges[proc+1]; i++) sendbuf[k++] = atbarray[i+j*cM]; 1962cb20be35SHong Zhang } 1963cb20be35SHong Zhang } 1964c5ef1628SHong Zhang /* sum all atbarray to local values of C */ 1965660d5466SHong Zhang ierr = MatDenseGetArray(c->A,&carray);CHKERRQ(ierr); 19663462b7efSHong Zhang ierr = MPI_Reduce_scatter(sendbuf,carray,recvcounts,MPIU_SCALAR,MPIU_SUM,comm);CHKERRQ(ierr); 1967660d5466SHong Zhang ierr = MatDenseRestoreArray(c->A,&carray);CHKERRQ(ierr); 1968cb20be35SHong Zhang PetscFunctionReturn(0); 1969cb20be35SHong Zhang } 1970cb20be35SHong Zhang 1971cb20be35SHong Zhang PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat *C) 1972cb20be35SHong Zhang { 1973cb20be35SHong Zhang PetscErrorCode ierr; 1974baa3c1c6SHong Zhang Mat Cdense; 1975cb20be35SHong Zhang MPI_Comm comm; 1976baa3c1c6SHong Zhang PetscMPIInt size; 1977660d5466SHong Zhang PetscInt cm=A->cmap->n,cM,cN=B->cmap->N; 1978baa3c1c6SHong Zhang Mat_MPIDense *c; 1979baa3c1c6SHong Zhang Mat_TransMatMultDense *atb; 1980cb20be35SHong Zhang 1981cb20be35SHong Zhang PetscFunctionBegin; 1982baa3c1c6SHong Zhang ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 1983cb20be35SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) { 1984cb20be35SHong Zhang SETERRQ4(comm,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != B (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 1985cb20be35SHong Zhang } 1986cb20be35SHong Zhang 1987baa3c1c6SHong Zhang /* create matrix product Cdense */ 1988baa3c1c6SHong Zhang ierr = MatCreate(comm,&Cdense);CHKERRQ(ierr); 1989660d5466SHong Zhang ierr = MatSetSizes(Cdense,cm,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 1990baa3c1c6SHong Zhang ierr = MatSetType(Cdense,MATMPIDENSE);CHKERRQ(ierr); 1991baa3c1c6SHong Zhang ierr = MatMPIDenseSetPreallocation(Cdense,NULL);CHKERRQ(ierr); 1992baa3c1c6SHong Zhang ierr = MatAssemblyBegin(Cdense,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1993baa3c1c6SHong Zhang ierr = MatAssemblyEnd(Cdense,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1994baa3c1c6SHong Zhang *C = Cdense; 1995baa3c1c6SHong Zhang 1996baa3c1c6SHong Zhang /* create data structure for reuse Cdense */ 1997baa3c1c6SHong Zhang ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1998baa3c1c6SHong Zhang ierr = PetscNew(&atb);CHKERRQ(ierr); 1999660d5466SHong Zhang cM = Cdense->rmap->N; 2000c5ef1628SHong Zhang ierr = PetscMalloc3(cM*cN,&atb->sendbuf,cM*cN,&atb->atbarray,size,&atb->recvcounts);CHKERRQ(ierr); 2001baa3c1c6SHong Zhang 2002baa3c1c6SHong Zhang c = (Mat_MPIDense*)Cdense->data; 2003baa3c1c6SHong Zhang c->atbdense = atb; 2004baa3c1c6SHong Zhang atb->destroy = Cdense->ops->destroy; 2005baa3c1c6SHong Zhang Cdense->ops->destroy = MatDestroy_MatTransMatMult_MPIDense_MPIDense; 2006cb20be35SHong Zhang PetscFunctionReturn(0); 2007cb20be35SHong Zhang } 2008cb20be35SHong Zhang 2009cb20be35SHong Zhang PetscErrorCode MatTransposeMatMult_MPIDense_MPIDense(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C) 2010cb20be35SHong Zhang { 2011cb20be35SHong Zhang PetscErrorCode ierr; 2012cb20be35SHong Zhang 2013cb20be35SHong Zhang PetscFunctionBegin; 2014cb20be35SHong Zhang if (scall == MAT_INITIAL_MATRIX) { 2015cb20be35SHong Zhang ierr = MatTransposeMatMultSymbolic_MPIDense_MPIDense(A,B,fill,C);CHKERRQ(ierr); 2016cb20be35SHong Zhang } 2017cb20be35SHong Zhang ierr = MatTransposeMatMultNumeric_MPIDense_MPIDense(A,B,*C);CHKERRQ(ierr); 2018cb20be35SHong Zhang PetscFunctionReturn(0); 2019cb20be35SHong Zhang } 2020320f2790SHong Zhang 2021cc48ffa7SToby Isaac static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat A, Mat B, PetscReal fill, Mat *C) 2022cc48ffa7SToby Isaac { 2023cc48ffa7SToby Isaac PetscErrorCode ierr; 2024cc48ffa7SToby Isaac Mat Cdense; 2025cc48ffa7SToby Isaac MPI_Comm comm; 2026cc48ffa7SToby Isaac PetscMPIInt i, size; 2027cc48ffa7SToby Isaac PetscInt maxRows, bufsiz; 2028cc48ffa7SToby Isaac Mat_MPIDense *c; 2029cc48ffa7SToby Isaac PetscMPIInt tag; 2030faa55883SToby Isaac const char *algTypes[2] = {"allgatherv","cyclic"}; 2031faa55883SToby Isaac PetscInt alg, nalg = 2; 2032cc48ffa7SToby Isaac Mat_MatTransMultDense *abt; 2033cc48ffa7SToby Isaac 2034cc48ffa7SToby Isaac PetscFunctionBegin; 2035cc48ffa7SToby Isaac ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 2036faa55883SToby Isaac alg = 0; /* default is allgatherv */ 2037faa55883SToby Isaac ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)A),((PetscObject)A)->prefix,"MatMatTransposeMult","Mat");CHKERRQ(ierr); 2038faa55883SToby Isaac ierr = PetscOptionsEList("-matmattransmult_mpidense_mpidense_via","Algorithmic approach","MatMatTransposeMult",algTypes,nalg,algTypes[0],&alg,NULL);CHKERRQ(ierr); 2039faa55883SToby Isaac ierr = PetscOptionsEnd();CHKERRQ(ierr); 2040cc48ffa7SToby Isaac if (A->cmap->N != B->cmap->N) { 2041cc48ffa7SToby Isaac SETERRQ2(comm,PETSC_ERR_ARG_SIZ,"Matrix global column dimensions are incompatible, A (%D) != B (%D)",A->cmap->N,B->cmap->N); 2042cc48ffa7SToby Isaac } 2043cc48ffa7SToby Isaac 2044cc48ffa7SToby Isaac /* create matrix product Cdense */ 2045cc48ffa7SToby Isaac ierr = MatCreate(comm,&Cdense);CHKERRQ(ierr); 2046cc48ffa7SToby Isaac ierr = MatSetSizes(Cdense,A->rmap->n,B->rmap->n,A->rmap->N,B->rmap->N);CHKERRQ(ierr); 2047cc48ffa7SToby Isaac ierr = MatSetType(Cdense,MATMPIDENSE);CHKERRQ(ierr); 2048cc48ffa7SToby Isaac ierr = MatMPIDenseSetPreallocation(Cdense,NULL);CHKERRQ(ierr); 2049cc48ffa7SToby Isaac ierr = PetscObjectGetNewTag((PetscObject)Cdense, &tag);CHKERRQ(ierr); 2050cc48ffa7SToby Isaac ierr = MatAssemblyBegin(Cdense,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2051cc48ffa7SToby Isaac ierr = MatAssemblyEnd(Cdense,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2052cc48ffa7SToby Isaac *C = Cdense; 2053cc48ffa7SToby Isaac 2054cc48ffa7SToby Isaac /* create data structure for reuse Cdense */ 2055cc48ffa7SToby Isaac ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2056cc48ffa7SToby Isaac ierr = PetscNew(&abt);CHKERRQ(ierr); 2057cc48ffa7SToby Isaac abt->tag = tag; 2058faa55883SToby Isaac abt->alg = alg; 2059faa55883SToby Isaac switch (alg) { 2060faa55883SToby Isaac case 1: 2061cc48ffa7SToby Isaac for (maxRows = 0, i = 0; i < size; i++) maxRows = PetscMax(maxRows, (B->rmap->range[i + 1] - B->rmap->range[i])); 2062cc48ffa7SToby Isaac bufsiz = A->cmap->N * maxRows; 2063cc48ffa7SToby Isaac ierr = PetscMalloc2(bufsiz,&(abt->buf[0]),bufsiz,&(abt->buf[1]));CHKERRQ(ierr); 2064faa55883SToby Isaac break; 2065faa55883SToby Isaac default: 2066faa55883SToby Isaac ierr = PetscMalloc2(B->rmap->n * B->cmap->N, &(abt->buf[0]), B->rmap->N * B->cmap->N, &(abt->buf[1]));CHKERRQ(ierr); 2067faa55883SToby Isaac ierr = PetscMalloc2(size,&(abt->recvcounts),size+1,&(abt->recvdispls));CHKERRQ(ierr); 2068faa55883SToby Isaac for (i = 0; i <= size; i++) abt->recvdispls[i] = B->rmap->range[i] * A->cmap->N; 2069faa55883SToby Isaac for (i = 0; i < size; i++) abt->recvcounts[i] = abt->recvdispls[i + 1] - abt->recvdispls[i]; 2070faa55883SToby Isaac break; 2071faa55883SToby Isaac } 2072cc48ffa7SToby Isaac 2073cc48ffa7SToby Isaac c = (Mat_MPIDense*)Cdense->data; 2074cc48ffa7SToby Isaac c->abtdense = abt; 2075cc48ffa7SToby Isaac abt->destroy = Cdense->ops->destroy; 2076cc48ffa7SToby Isaac Cdense->ops->destroy = MatDestroy_MatMatTransMult_MPIDense_MPIDense; 2077cc48ffa7SToby Isaac PetscFunctionReturn(0); 2078cc48ffa7SToby Isaac } 2079cc48ffa7SToby Isaac 2080faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(Mat A, Mat B, Mat C) 2081cc48ffa7SToby Isaac { 2082cc48ffa7SToby Isaac Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 2083cc48ffa7SToby Isaac Mat_SeqDense *aseq=(Mat_SeqDense*)(a->A)->data, *bseq=(Mat_SeqDense*)(b->A)->data; 2084cc48ffa7SToby Isaac Mat_SeqDense *cseq=(Mat_SeqDense*)(c->A)->data; 2085cc48ffa7SToby Isaac Mat_MatTransMultDense *abt = c->abtdense; 2086cc48ffa7SToby Isaac PetscErrorCode ierr; 2087cc48ffa7SToby Isaac MPI_Comm comm; 2088cc48ffa7SToby Isaac PetscMPIInt rank,size, sendsiz, recvsiz, sendto, recvfrom, recvisfrom; 2089ce36caf3SSatish Balay PetscScalar *sendbuf, *recvbuf=0, *carray; 2090cc48ffa7SToby Isaac PetscInt i,cK=A->cmap->N,k,j,bn; 2091cc48ffa7SToby Isaac PetscScalar _DOne=1.0,_DZero=0.0; 2092cc48ffa7SToby Isaac PetscBLASInt cm, cn, ck; 2093cc48ffa7SToby Isaac MPI_Request reqs[2]; 2094cc48ffa7SToby Isaac const PetscInt *ranges; 2095cc48ffa7SToby Isaac 2096cc48ffa7SToby Isaac PetscFunctionBegin; 2097cc48ffa7SToby Isaac ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 2098cc48ffa7SToby Isaac ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 2099cc48ffa7SToby Isaac ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2100cc48ffa7SToby Isaac 2101cc48ffa7SToby Isaac ierr = MatGetOwnershipRanges(B,&ranges);CHKERRQ(ierr); 2102cc48ffa7SToby Isaac bn = B->rmap->n; 2103cc48ffa7SToby Isaac if (bseq->lda == bn) { 2104cc48ffa7SToby Isaac sendbuf = bseq->v; 2105cc48ffa7SToby Isaac } else { 2106cc48ffa7SToby Isaac sendbuf = abt->buf[0]; 2107cc48ffa7SToby Isaac for (k = 0, i = 0; i < cK; i++) { 2108cc48ffa7SToby Isaac for (j = 0; j < bn; j++, k++) { 2109cc48ffa7SToby Isaac sendbuf[k] = bseq->v[i * bseq->lda + j]; 2110cc48ffa7SToby Isaac } 2111cc48ffa7SToby Isaac } 2112cc48ffa7SToby Isaac } 2113cc48ffa7SToby Isaac if (size > 1) { 2114cc48ffa7SToby Isaac sendto = (rank + size - 1) % size; 2115cc48ffa7SToby Isaac recvfrom = (rank + size + 1) % size; 2116cc48ffa7SToby Isaac } else { 2117cc48ffa7SToby Isaac sendto = recvfrom = 0; 2118cc48ffa7SToby Isaac } 2119cc48ffa7SToby Isaac ierr = PetscBLASIntCast(cK,&ck);CHKERRQ(ierr); 2120cc48ffa7SToby Isaac ierr = PetscBLASIntCast(c->A->rmap->n,&cm);CHKERRQ(ierr); 2121cc48ffa7SToby Isaac recvisfrom = rank; 2122cc48ffa7SToby Isaac for (i = 0; i < size; i++) { 2123cc48ffa7SToby Isaac /* we have finished receiving in sending, bufs can be read/modified */ 2124cc48ffa7SToby Isaac PetscInt nextrecvisfrom = (recvisfrom + 1) % size; /* which process the next recvbuf will originate on */ 2125cc48ffa7SToby Isaac PetscInt nextbn = ranges[nextrecvisfrom + 1] - ranges[nextrecvisfrom]; 2126cc48ffa7SToby Isaac 2127cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2128cc48ffa7SToby Isaac /* start the cyclic sends from sendbuf, to recvbuf (which will switch to sendbuf) */ 2129cc48ffa7SToby Isaac sendsiz = cK * bn; 2130cc48ffa7SToby Isaac recvsiz = cK * nextbn; 2131cc48ffa7SToby Isaac recvbuf = (i & 1) ? abt->buf[0] : abt->buf[1]; 2132cc48ffa7SToby Isaac ierr = MPI_Isend(sendbuf, sendsiz, MPIU_SCALAR, sendto, abt->tag, comm, &reqs[0]);CHKERRQ(ierr); 2133cc48ffa7SToby Isaac ierr = MPI_Irecv(recvbuf, recvsiz, MPIU_SCALAR, recvfrom, abt->tag, comm, &reqs[1]);CHKERRQ(ierr); 2134cc48ffa7SToby Isaac } 2135cc48ffa7SToby Isaac 2136cc48ffa7SToby Isaac /* local aseq * sendbuf^T */ 2137cc48ffa7SToby Isaac ierr = PetscBLASIntCast(ranges[recvisfrom + 1] - ranges[recvisfrom], &cn);CHKERRQ(ierr); 2138cc48ffa7SToby Isaac carray = &cseq->v[cseq->lda * ranges[recvisfrom]]; 2139cc48ffa7SToby Isaac PetscStackCallBLAS("BLASgemm",BLASgemm_("N","T",&cm,&cn,&ck,&_DOne,aseq->v,&aseq->lda,sendbuf,&cn,&_DZero,carray,&cseq->lda)); 2140cc48ffa7SToby Isaac 2141cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2142cc48ffa7SToby Isaac /* wait for the sends and receives to complete, swap sendbuf and recvbuf */ 2143cc48ffa7SToby Isaac ierr = MPI_Waitall(2, reqs, MPI_STATUSES_IGNORE);CHKERRQ(ierr); 2144cc48ffa7SToby Isaac } 2145cc48ffa7SToby Isaac bn = nextbn; 2146cc48ffa7SToby Isaac recvisfrom = nextrecvisfrom; 2147cc48ffa7SToby Isaac sendbuf = recvbuf; 2148cc48ffa7SToby Isaac } 2149cc48ffa7SToby Isaac PetscFunctionReturn(0); 2150cc48ffa7SToby Isaac } 2151cc48ffa7SToby Isaac 2152faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(Mat A, Mat B, Mat C) 2153faa55883SToby Isaac { 2154faa55883SToby Isaac Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 2155faa55883SToby Isaac Mat_SeqDense *aseq=(Mat_SeqDense*)(a->A)->data, *bseq=(Mat_SeqDense*)(b->A)->data; 2156faa55883SToby Isaac Mat_SeqDense *cseq=(Mat_SeqDense*)(c->A)->data; 2157faa55883SToby Isaac Mat_MatTransMultDense *abt = c->abtdense; 2158faa55883SToby Isaac PetscErrorCode ierr; 2159faa55883SToby Isaac MPI_Comm comm; 2160faa55883SToby Isaac PetscMPIInt rank,size; 2161faa55883SToby Isaac PetscScalar *sendbuf, *recvbuf; 2162faa55883SToby Isaac PetscInt i,cK=A->cmap->N,k,j,bn; 2163faa55883SToby Isaac PetscScalar _DOne=1.0,_DZero=0.0; 2164faa55883SToby Isaac PetscBLASInt cm, cn, ck; 2165faa55883SToby Isaac 2166faa55883SToby Isaac PetscFunctionBegin; 2167faa55883SToby Isaac ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 2168faa55883SToby Isaac ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 2169faa55883SToby Isaac ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2170faa55883SToby Isaac 2171faa55883SToby Isaac /* copy transpose of B into buf[0] */ 2172faa55883SToby Isaac bn = B->rmap->n; 2173faa55883SToby Isaac sendbuf = abt->buf[0]; 2174faa55883SToby Isaac recvbuf = abt->buf[1]; 2175faa55883SToby Isaac for (k = 0, j = 0; j < bn; j++) { 2176faa55883SToby Isaac for (i = 0; i < cK; i++, k++) { 2177faa55883SToby Isaac sendbuf[k] = bseq->v[i * bseq->lda + j]; 2178faa55883SToby Isaac } 2179faa55883SToby Isaac } 2180faa55883SToby Isaac ierr = MPI_Allgatherv(sendbuf, bn * cK, MPIU_SCALAR, recvbuf, abt->recvcounts, abt->recvdispls, MPIU_SCALAR, comm);CHKERRQ(ierr); 2181faa55883SToby Isaac ierr = PetscBLASIntCast(cK,&ck);CHKERRQ(ierr); 2182faa55883SToby Isaac ierr = PetscBLASIntCast(c->A->rmap->n,&cm);CHKERRQ(ierr); 2183faa55883SToby Isaac ierr = PetscBLASIntCast(c->A->cmap->n,&cn);CHKERRQ(ierr); 2184faa55883SToby Isaac PetscStackCallBLAS("BLASgemm",BLASgemm_("N","N",&cm,&cn,&ck,&_DOne,aseq->v,&aseq->lda,recvbuf,&ck,&_DZero,cseq->v,&cseq->lda)); 2185faa55883SToby Isaac PetscFunctionReturn(0); 2186faa55883SToby Isaac } 2187faa55883SToby Isaac 2188faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat A, Mat B, Mat C) 2189faa55883SToby Isaac { 2190faa55883SToby Isaac Mat_MPIDense *c=(Mat_MPIDense*)C->data; 2191faa55883SToby Isaac Mat_MatTransMultDense *abt = c->abtdense; 2192faa55883SToby Isaac PetscErrorCode ierr; 2193faa55883SToby Isaac 2194faa55883SToby Isaac PetscFunctionBegin; 2195faa55883SToby Isaac switch (abt->alg) { 2196faa55883SToby Isaac case 1: 2197faa55883SToby Isaac ierr = MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(A, B, C);CHKERRQ(ierr); 2198faa55883SToby Isaac break; 2199faa55883SToby Isaac default: 2200faa55883SToby Isaac ierr = MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(A, B, C);CHKERRQ(ierr); 2201faa55883SToby Isaac break; 2202faa55883SToby Isaac } 2203faa55883SToby Isaac PetscFunctionReturn(0); 2204faa55883SToby Isaac } 2205faa55883SToby Isaac 2206cc48ffa7SToby Isaac static PetscErrorCode MatMatTransposeMult_MPIDense_MPIDense(Mat A,Mat B, MatReuse scall, PetscReal fill, Mat *C) 2207cc48ffa7SToby Isaac { 2208cc48ffa7SToby Isaac PetscErrorCode ierr; 2209cc48ffa7SToby Isaac 2210cc48ffa7SToby Isaac PetscFunctionBegin; 2211cc48ffa7SToby Isaac if (scall == MAT_INITIAL_MATRIX) { 2212cc48ffa7SToby Isaac ierr = MatMatTransposeMultSymbolic_MPIDense_MPIDense(A,B,fill,C);CHKERRQ(ierr); 2213cc48ffa7SToby Isaac } 2214cc48ffa7SToby Isaac ierr = MatMatTransposeMultNumeric_MPIDense_MPIDense(A,B,*C);CHKERRQ(ierr); 2215cc48ffa7SToby Isaac PetscFunctionReturn(0); 2216cc48ffa7SToby Isaac } 2217cc48ffa7SToby Isaac 2218320f2790SHong Zhang PetscErrorCode MatDestroy_MatMatMult_MPIDense_MPIDense(Mat A) 2219320f2790SHong Zhang { 2220320f2790SHong Zhang PetscErrorCode ierr; 2221320f2790SHong Zhang Mat_MPIDense *a = (Mat_MPIDense*)A->data; 2222320f2790SHong Zhang Mat_MatMultDense *ab = a->abdense; 2223320f2790SHong Zhang 2224320f2790SHong Zhang PetscFunctionBegin; 2225320f2790SHong Zhang ierr = MatDestroy(&ab->Ce);CHKERRQ(ierr); 2226320f2790SHong Zhang ierr = MatDestroy(&ab->Ae);CHKERRQ(ierr); 2227320f2790SHong Zhang ierr = MatDestroy(&ab->Be);CHKERRQ(ierr); 2228320f2790SHong Zhang 2229320f2790SHong Zhang ierr = (ab->destroy)(A);CHKERRQ(ierr); 2230320f2790SHong Zhang ierr = PetscFree(ab);CHKERRQ(ierr); 2231320f2790SHong Zhang PetscFunctionReturn(0); 2232320f2790SHong Zhang } 2233320f2790SHong Zhang 22345242a7b1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 2235320f2790SHong Zhang PetscErrorCode MatMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 2236320f2790SHong Zhang { 2237320f2790SHong Zhang PetscErrorCode ierr; 2238320f2790SHong Zhang Mat_MPIDense *c=(Mat_MPIDense*)C->data; 2239320f2790SHong Zhang Mat_MatMultDense *ab=c->abdense; 2240320f2790SHong Zhang 2241320f2790SHong Zhang PetscFunctionBegin; 2242de0a22f0SHong Zhang ierr = MatConvert_MPIDense_Elemental(A,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Ae);CHKERRQ(ierr); 2243de0a22f0SHong Zhang ierr = MatConvert_MPIDense_Elemental(B,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Be);CHKERRQ(ierr); 2244320f2790SHong Zhang ierr = MatMatMultNumeric(ab->Ae,ab->Be,ab->Ce);CHKERRQ(ierr); 2245de0a22f0SHong Zhang ierr = MatConvert(ab->Ce,MATMPIDENSE,MAT_REUSE_MATRIX,&C);CHKERRQ(ierr); 2246320f2790SHong Zhang PetscFunctionReturn(0); 2247320f2790SHong Zhang } 2248320f2790SHong Zhang 2249320f2790SHong Zhang PetscErrorCode MatMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat *C) 2250320f2790SHong Zhang { 2251320f2790SHong Zhang PetscErrorCode ierr; 2252320f2790SHong Zhang Mat Ae,Be,Ce; 2253320f2790SHong Zhang Mat_MPIDense *c; 2254320f2790SHong Zhang Mat_MatMultDense *ab; 2255320f2790SHong Zhang 2256320f2790SHong Zhang PetscFunctionBegin; 2257320f2790SHong Zhang if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend) { 2258378336b6SHong Zhang SETERRQ4(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != B (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 2259320f2790SHong Zhang } 2260320f2790SHong Zhang 2261320f2790SHong Zhang /* convert A and B to Elemental matrices Ae and Be */ 2262320f2790SHong Zhang ierr = MatConvert(A,MATELEMENTAL,MAT_INITIAL_MATRIX, &Ae);CHKERRQ(ierr); 2263320f2790SHong Zhang ierr = MatConvert(B,MATELEMENTAL,MAT_INITIAL_MATRIX, &Be);CHKERRQ(ierr); 2264320f2790SHong Zhang 2265320f2790SHong Zhang /* Ce = Ae*Be */ 2266320f2790SHong Zhang ierr = MatMatMultSymbolic(Ae,Be,fill,&Ce);CHKERRQ(ierr); 2267320f2790SHong Zhang ierr = MatMatMultNumeric(Ae,Be,Ce);CHKERRQ(ierr); 2268320f2790SHong Zhang 2269320f2790SHong Zhang /* convert Ce to C */ 2270320f2790SHong Zhang ierr = MatConvert(Ce,MATMPIDENSE,MAT_INITIAL_MATRIX,C);CHKERRQ(ierr); 2271320f2790SHong Zhang 2272320f2790SHong Zhang /* create data structure for reuse Cdense */ 2273320f2790SHong Zhang ierr = PetscNew(&ab);CHKERRQ(ierr); 2274320f2790SHong Zhang c = (Mat_MPIDense*)(*C)->data; 2275320f2790SHong Zhang c->abdense = ab; 2276320f2790SHong Zhang 2277320f2790SHong Zhang ab->Ae = Ae; 2278320f2790SHong Zhang ab->Be = Be; 2279320f2790SHong Zhang ab->Ce = Ce; 2280320f2790SHong Zhang ab->destroy = (*C)->ops->destroy; 2281320f2790SHong Zhang (*C)->ops->destroy = MatDestroy_MatMatMult_MPIDense_MPIDense; 22829775878aSHong Zhang (*C)->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIDense; 2283320f2790SHong Zhang PetscFunctionReturn(0); 2284320f2790SHong Zhang } 2285320f2790SHong Zhang 2286150d2497SBarry Smith PETSC_INTERN PetscErrorCode MatMatMult_MPIDense_MPIDense(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C) 2287320f2790SHong Zhang { 2288320f2790SHong Zhang PetscErrorCode ierr; 2289320f2790SHong Zhang 2290320f2790SHong Zhang PetscFunctionBegin; 2291320f2790SHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* simbolic product includes numeric product */ 229257299f2fSHong Zhang ierr = PetscLogEventBegin(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr); 2293320f2790SHong Zhang ierr = MatMatMultSymbolic_MPIDense_MPIDense(A,B,fill,C);CHKERRQ(ierr); 229457299f2fSHong Zhang ierr = PetscLogEventEnd(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr); 2295320f2790SHong Zhang } else { 229657299f2fSHong Zhang ierr = PetscLogEventBegin(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr); 2297320f2790SHong Zhang ierr = MatMatMultNumeric_MPIDense_MPIDense(A,B,*C);CHKERRQ(ierr); 229857299f2fSHong Zhang ierr = PetscLogEventEnd(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr); 2299320f2790SHong Zhang } 2300320f2790SHong Zhang PetscFunctionReturn(0); 2301320f2790SHong Zhang } 23025242a7b1SHong Zhang #endif 230386aefd0dSHong Zhang 2304