1be1d678aSKris Buschelman 2ed3cc1f0SBarry Smith /* 3ed3cc1f0SBarry Smith Basic functions for basic parallel dense matrices. 4ed3cc1f0SBarry Smith */ 5ed3cc1f0SBarry Smith 6c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h> /*I "petscmat.h" I*/ 78949adfdSHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 8baa3c1c6SHong Zhang #include <petscblaslapack.h> 98965ea79SLois Curfman McInnes 10ab92ecdeSBarry Smith /*@ 11ab92ecdeSBarry Smith 12ab92ecdeSBarry Smith MatDenseGetLocalMatrix - For a MATMPIDENSE or MATSEQDENSE matrix returns the sequential 13ab92ecdeSBarry Smith matrix that represents the operator. For sequential matrices it returns itself. 14ab92ecdeSBarry Smith 15ab92ecdeSBarry Smith Input Parameter: 16ab92ecdeSBarry Smith . A - the Seq or MPI dense matrix 17ab92ecdeSBarry Smith 18ab92ecdeSBarry Smith Output Parameter: 19ab92ecdeSBarry Smith . B - the inner matrix 20ab92ecdeSBarry Smith 218e6c10adSSatish Balay Level: intermediate 228e6c10adSSatish Balay 23ab92ecdeSBarry Smith @*/ 24ab92ecdeSBarry Smith PetscErrorCode MatDenseGetLocalMatrix(Mat A,Mat *B) 25ab92ecdeSBarry Smith { 26ab92ecdeSBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 27ace3abfcSBarry Smith PetscBool flg; 28ab92ecdeSBarry Smith 29ab92ecdeSBarry Smith PetscFunctionBegin; 30d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 31d5ea218eSStefano Zampini PetscValidPointer(B,2); 329566063dSJacob Faibussowitsch PetscCall(PetscObjectBaseTypeCompare((PetscObject)A,MATMPIDENSE,&flg)); 332205254eSKarl Rupp if (flg) *B = mat->A; 34f140bc17SStefano Zampini else { 359566063dSJacob Faibussowitsch PetscCall(PetscObjectBaseTypeCompare((PetscObject)A,MATSEQDENSE,&flg)); 3628b400f6SJacob Faibussowitsch PetscCheck(flg,PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Not for matrix type %s",((PetscObject)A)->type_name); 37f140bc17SStefano Zampini *B = A; 38f140bc17SStefano Zampini } 39ab92ecdeSBarry Smith PetscFunctionReturn(0); 40ab92ecdeSBarry Smith } 41ab92ecdeSBarry Smith 42a76f77c3SStefano Zampini PetscErrorCode MatCopy_MPIDense(Mat A, Mat B, MatStructure s) 43a76f77c3SStefano Zampini { 44a76f77c3SStefano Zampini Mat_MPIDense *Amat = (Mat_MPIDense*)A->data; 45a76f77c3SStefano Zampini Mat_MPIDense *Bmat = (Mat_MPIDense*)B->data; 46a76f77c3SStefano Zampini 47a76f77c3SStefano Zampini PetscFunctionBegin; 489566063dSJacob Faibussowitsch PetscCall(MatCopy(Amat->A,Bmat->A,s)); 49a76f77c3SStefano Zampini PetscFunctionReturn(0); 50a76f77c3SStefano Zampini } 51a76f77c3SStefano Zampini 522f605a99SJose E. Roman PetscErrorCode MatShift_MPIDense(Mat A,PetscScalar alpha) 532f605a99SJose E. Roman { 542f605a99SJose E. Roman Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 552f605a99SJose E. Roman PetscInt j,lda,rstart = A->rmap->rstart,rend = A->rmap->rend,rend2; 562f605a99SJose E. Roman PetscScalar *v; 572f605a99SJose E. Roman 582f605a99SJose E. Roman PetscFunctionBegin; 592f605a99SJose E. Roman PetscCall(MatDenseGetArray(mat->A,&v)); 602f605a99SJose E. Roman PetscCall(MatDenseGetLDA(mat->A,&lda)); 612f605a99SJose E. Roman rend2 = PetscMin(rend,A->cmap->N); 622f605a99SJose E. Roman if (rend2>rstart) { 632f605a99SJose E. Roman for (j=rstart; j<rend2; j++) v[j-rstart+j*lda] += alpha; 642f605a99SJose E. Roman PetscCall(PetscLogFlops(rend2-rstart)); 652f605a99SJose E. Roman } 662f605a99SJose E. Roman PetscCall(MatDenseRestoreArray(mat->A,&v)); 672f605a99SJose E. Roman PetscFunctionReturn(0); 682f605a99SJose E. Roman } 692f605a99SJose E. Roman 70ba8c8a56SBarry Smith PetscErrorCode MatGetRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 71ba8c8a56SBarry Smith { 72ba8c8a56SBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 73d0f46423SBarry Smith PetscInt lrow,rstart = A->rmap->rstart,rend = A->rmap->rend; 74ba8c8a56SBarry Smith 75ba8c8a56SBarry Smith PetscFunctionBegin; 76aed4548fSBarry Smith PetscCheck(row >= rstart && row < rend,PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows"); 77ba8c8a56SBarry Smith lrow = row - rstart; 789566063dSJacob Faibussowitsch PetscCall(MatGetRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v)); 79ba8c8a56SBarry Smith PetscFunctionReturn(0); 80ba8c8a56SBarry Smith } 81ba8c8a56SBarry Smith 82637a0070SStefano Zampini PetscErrorCode MatRestoreRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 83ba8c8a56SBarry Smith { 84637a0070SStefano Zampini Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 85637a0070SStefano Zampini PetscInt lrow,rstart = A->rmap->rstart,rend = A->rmap->rend; 86ba8c8a56SBarry Smith 87ba8c8a56SBarry Smith PetscFunctionBegin; 88aed4548fSBarry Smith PetscCheck(row >= rstart && row < rend,PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows"); 89637a0070SStefano Zampini lrow = row - rstart; 909566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v)); 91ba8c8a56SBarry Smith PetscFunctionReturn(0); 92ba8c8a56SBarry Smith } 93ba8c8a56SBarry Smith 9411bd1e4dSLisandro Dalcin PetscErrorCode MatGetDiagonalBlock_MPIDense(Mat A,Mat *a) 950de54da6SSatish Balay { 960de54da6SSatish Balay Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 97d0f46423SBarry Smith PetscInt m = A->rmap->n,rstart = A->rmap->rstart; 9887828ca2SBarry Smith PetscScalar *array; 990de54da6SSatish Balay MPI_Comm comm; 1004b6ae80fSStefano Zampini PetscBool flg; 10111bd1e4dSLisandro Dalcin Mat B; 1020de54da6SSatish Balay 1030de54da6SSatish Balay PetscFunctionBegin; 1049566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A,&flg)); 10528b400f6SJacob Faibussowitsch PetscCheck(flg,PETSC_COMM_SELF,PETSC_ERR_SUP,"Only square matrices supported."); 1069566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)A,"DiagonalBlock",(PetscObject*)&B)); 107616b8fbbSStefano Zampini if (!B) { /* This should use MatDenseGetSubMatrix (not create), but we would need a call like MatRestoreDiagonalBlock */ 1084b6ae80fSStefano Zampini 1099566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)mdn->A,MATSEQDENSECUDA,&flg)); 11028b400f6SJacob Faibussowitsch PetscCheck(!flg,PETSC_COMM_SELF,PETSC_ERR_SUP,"Not coded for %s. Send an email to petsc-dev@mcs.anl.gov to request this feature",MATSEQDENSECUDA); 1119566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)(mdn->A),&comm)); 1129566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,&B)); 1139566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B,m,m,m,m)); 1149566063dSJacob Faibussowitsch PetscCall(MatSetType(B,((PetscObject)mdn->A)->type_name)); 1159566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(mdn->A,(const PetscScalar**)&array)); 1169566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(B,array+m*rstart)); 1179566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(mdn->A,(const PetscScalar**)&array)); 1189566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)A,"DiagonalBlock",(PetscObject)B)); 11911bd1e4dSLisandro Dalcin *a = B; 1209566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 1212205254eSKarl Rupp } else *a = B; 1220de54da6SSatish Balay PetscFunctionReturn(0); 1230de54da6SSatish Balay } 1240de54da6SSatish Balay 12513f74950SBarry Smith PetscErrorCode MatSetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],const PetscScalar v[],InsertMode addv) 1268965ea79SLois Curfman McInnes { 12739b7565bSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)mat->data; 128d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 129ace3abfcSBarry Smith PetscBool roworiented = A->roworiented; 1308965ea79SLois Curfman McInnes 1313a40ed3dSBarry Smith PetscFunctionBegin; 1328965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 1335ef9f2a5SBarry Smith if (idxm[i] < 0) continue; 13408401ef6SPierre Jolivet PetscCheck(idxm[i] < mat->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 1358965ea79SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 1368965ea79SLois Curfman McInnes row = idxm[i] - rstart; 13739b7565bSBarry Smith if (roworiented) { 1389566063dSJacob Faibussowitsch PetscCall(MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv)); 1393a40ed3dSBarry Smith } else { 1408965ea79SLois Curfman McInnes for (j=0; j<n; j++) { 1415ef9f2a5SBarry Smith if (idxn[j] < 0) continue; 14208401ef6SPierre Jolivet PetscCheck(idxn[j] < mat->cmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 1439566063dSJacob Faibussowitsch PetscCall(MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv)); 14439b7565bSBarry Smith } 1458965ea79SLois Curfman McInnes } 1462205254eSKarl Rupp } else if (!A->donotstash) { 1475080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 14839b7565bSBarry Smith if (roworiented) { 1499566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash,idxm[i],n,idxn,v+i*n,PETSC_FALSE)); 150d36fbae8SSatish Balay } else { 1519566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash,idxm[i],n,idxn,v+i,m,PETSC_FALSE)); 15239b7565bSBarry Smith } 153b49de8d1SLois Curfman McInnes } 154b49de8d1SLois Curfman McInnes } 1553a40ed3dSBarry Smith PetscFunctionReturn(0); 156b49de8d1SLois Curfman McInnes } 157b49de8d1SLois Curfman McInnes 15813f74950SBarry Smith PetscErrorCode MatGetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 159b49de8d1SLois Curfman McInnes { 160b49de8d1SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 161d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 162b49de8d1SLois Curfman McInnes 1633a40ed3dSBarry Smith PetscFunctionBegin; 164b49de8d1SLois Curfman McInnes for (i=0; i<m; i++) { 16554c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 16654c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 167b49de8d1SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 168b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 169b49de8d1SLois Curfman McInnes for (j=0; j<n; j++) { 17054c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 17154c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 1729566063dSJacob Faibussowitsch PetscCall(MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j)); 173b49de8d1SLois Curfman McInnes } 174e7e72b3dSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 1758965ea79SLois Curfman McInnes } 1763a40ed3dSBarry Smith PetscFunctionReturn(0); 1778965ea79SLois Curfman McInnes } 1788965ea79SLois Curfman McInnes 17949a6ff4bSBarry Smith static PetscErrorCode MatDenseGetLDA_MPIDense(Mat A,PetscInt *lda) 18049a6ff4bSBarry Smith { 18149a6ff4bSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 18249a6ff4bSBarry Smith 18349a6ff4bSBarry Smith PetscFunctionBegin; 1849566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,lda)); 18549a6ff4bSBarry Smith PetscFunctionReturn(0); 18649a6ff4bSBarry Smith } 18749a6ff4bSBarry Smith 188ad16ce7aSStefano Zampini static PetscErrorCode MatDenseSetLDA_MPIDense(Mat A,PetscInt lda) 189ad16ce7aSStefano Zampini { 190ad16ce7aSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 19117359960SJose E. Roman PetscBool iscuda; 192ad16ce7aSStefano Zampini 193ad16ce7aSStefano Zampini PetscFunctionBegin; 19417359960SJose E. Roman if (!a->A) { 19528b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1969566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->rmap)); 1979566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->cmap)); 1989566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF,&a->A)); 1999566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)a->A)); 2009566063dSJacob Faibussowitsch PetscCall(MatSetSizes(a->A,A->rmap->n,A->cmap->N,A->rmap->n,A->cmap->N)); 2019566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A,MATMPIDENSECUDA,&iscuda)); 2029566063dSJacob Faibussowitsch PetscCall(MatSetType(a->A,iscuda ? MATSEQDENSECUDA : MATSEQDENSE)); 20317359960SJose E. Roman } 2049566063dSJacob Faibussowitsch PetscCall(MatDenseSetLDA(a->A,lda)); 205ad16ce7aSStefano Zampini PetscFunctionReturn(0); 206ad16ce7aSStefano Zampini } 207ad16ce7aSStefano Zampini 208637a0070SStefano Zampini static PetscErrorCode MatDenseGetArray_MPIDense(Mat A,PetscScalar **array) 209ff14e315SSatish Balay { 210ff14e315SSatish Balay Mat_MPIDense *a = (Mat_MPIDense*)A->data; 211ff14e315SSatish Balay 2123a40ed3dSBarry Smith PetscFunctionBegin; 21328b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2149566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(a->A,array)); 2153a40ed3dSBarry Smith PetscFunctionReturn(0); 216ff14e315SSatish Balay } 217ff14e315SSatish Balay 218637a0070SStefano Zampini static PetscErrorCode MatDenseGetArrayRead_MPIDense(Mat A,const PetscScalar **array) 2198572280aSBarry Smith { 2208572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 2218572280aSBarry Smith 2228572280aSBarry Smith PetscFunctionBegin; 22328b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2249566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A,array)); 2258572280aSBarry Smith PetscFunctionReturn(0); 2268572280aSBarry Smith } 2278572280aSBarry Smith 2286947451fSStefano Zampini static PetscErrorCode MatDenseGetArrayWrite_MPIDense(Mat A,PetscScalar **array) 2296947451fSStefano Zampini { 2306947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 2316947451fSStefano Zampini 2326947451fSStefano Zampini PetscFunctionBegin; 23328b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2349566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(a->A,array)); 2356947451fSStefano Zampini PetscFunctionReturn(0); 2366947451fSStefano Zampini } 2376947451fSStefano Zampini 238637a0070SStefano Zampini static PetscErrorCode MatDensePlaceArray_MPIDense(Mat A,const PetscScalar *array) 239d3042a70SBarry Smith { 240d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 241d3042a70SBarry Smith 242d3042a70SBarry Smith PetscFunctionBegin; 24328b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 24428b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2459566063dSJacob Faibussowitsch PetscCall(MatDensePlaceArray(a->A,array)); 246d3042a70SBarry Smith PetscFunctionReturn(0); 247d3042a70SBarry Smith } 248d3042a70SBarry Smith 249d3042a70SBarry Smith static PetscErrorCode MatDenseResetArray_MPIDense(Mat A) 250d3042a70SBarry Smith { 251d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 252d3042a70SBarry Smith 253d3042a70SBarry Smith PetscFunctionBegin; 25428b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 25528b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2569566063dSJacob Faibussowitsch PetscCall(MatDenseResetArray(a->A)); 257d3042a70SBarry Smith PetscFunctionReturn(0); 258d3042a70SBarry Smith } 259d3042a70SBarry Smith 260d5ea218eSStefano Zampini static PetscErrorCode MatDenseReplaceArray_MPIDense(Mat A,const PetscScalar *array) 261d5ea218eSStefano Zampini { 262d5ea218eSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 263d5ea218eSStefano Zampini 264d5ea218eSStefano Zampini PetscFunctionBegin; 26528b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 26628b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2679566063dSJacob Faibussowitsch PetscCall(MatDenseReplaceArray(a->A,array)); 268d5ea218eSStefano Zampini PetscFunctionReturn(0); 269d5ea218eSStefano Zampini } 270d5ea218eSStefano Zampini 2717dae84e0SHong Zhang static PetscErrorCode MatCreateSubMatrix_MPIDense(Mat A,IS isrow,IS iscol,MatReuse scall,Mat *B) 272ca3fa75bSLois Curfman McInnes { 273ca3fa75bSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data,*newmatd; 274637a0070SStefano Zampini PetscInt lda,i,j,rstart,rend,nrows,ncols,Ncols,nlrows,nlcols; 2755d0c19d7SBarry Smith const PetscInt *irow,*icol; 276637a0070SStefano Zampini const PetscScalar *v; 277637a0070SStefano Zampini PetscScalar *bv; 278ca3fa75bSLois Curfman McInnes Mat newmat; 2794aa3045dSJed Brown IS iscol_local; 28042a884f0SBarry Smith MPI_Comm comm_is,comm_mat; 281ca3fa75bSLois Curfman McInnes 282ca3fa75bSLois Curfman McInnes PetscFunctionBegin; 2839566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A,&comm_mat)); 2849566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)iscol,&comm_is)); 28508401ef6SPierre Jolivet PetscCheck(comm_mat == comm_is,PETSC_COMM_SELF,PETSC_ERR_ARG_NOTSAMECOMM,"IS communicator must match matrix communicator"); 28642a884f0SBarry Smith 2879566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol,&iscol_local)); 2889566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isrow,&irow)); 2899566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_local,&icol)); 2909566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow,&nrows)); 2919566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol,&ncols)); 2929566063dSJacob Faibussowitsch PetscCall(ISGetSize(iscol,&Ncols)); /* global number of columns, size of iscol_local */ 293ca3fa75bSLois Curfman McInnes 294ca3fa75bSLois Curfman McInnes /* No parallel redistribution currently supported! Should really check each index set 2957eba5e9cSLois Curfman McInnes to comfirm that it is OK. ... Currently supports only submatrix same partitioning as 2967eba5e9cSLois Curfman McInnes original matrix! */ 297ca3fa75bSLois Curfman McInnes 2989566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A,&nlrows,&nlcols)); 2999566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A,&rstart,&rend)); 300ca3fa75bSLois Curfman McInnes 301ca3fa75bSLois Curfman McInnes /* Check submatrix call */ 302ca3fa75bSLois Curfman McInnes if (scall == MAT_REUSE_MATRIX) { 303e32f2f54SBarry Smith /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */ 3047eba5e9cSLois Curfman McInnes /* Really need to test rows and column sizes! */ 305ca3fa75bSLois Curfman McInnes newmat = *B; 306ca3fa75bSLois Curfman McInnes } else { 307ca3fa75bSLois Curfman McInnes /* Create and fill new matrix */ 3089566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&newmat)); 3099566063dSJacob Faibussowitsch PetscCall(MatSetSizes(newmat,nrows,ncols,PETSC_DECIDE,Ncols)); 3109566063dSJacob Faibussowitsch PetscCall(MatSetType(newmat,((PetscObject)A)->type_name)); 3119566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(newmat,NULL)); 312ca3fa75bSLois Curfman McInnes } 313ca3fa75bSLois Curfman McInnes 314ca3fa75bSLois Curfman McInnes /* Now extract the data pointers and do the copy, column at a time */ 315ca3fa75bSLois Curfman McInnes newmatd = (Mat_MPIDense*)newmat->data; 3169566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(newmatd->A,&bv)); 3179566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(mat->A,&v)); 3189566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(mat->A,&lda)); 3194aa3045dSJed Brown for (i=0; i<Ncols; i++) { 320637a0070SStefano Zampini const PetscScalar *av = v + lda*icol[i]; 321ca3fa75bSLois Curfman McInnes for (j=0; j<nrows; j++) { 3227eba5e9cSLois Curfman McInnes *bv++ = av[irow[j] - rstart]; 323ca3fa75bSLois Curfman McInnes } 324ca3fa75bSLois Curfman McInnes } 3259566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(mat->A,&v)); 3269566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(newmatd->A,&bv)); 327ca3fa75bSLois Curfman McInnes 328ca3fa75bSLois Curfman McInnes /* Assemble the matrices so that the correct flags are set */ 3299566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY)); 3309566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY)); 331ca3fa75bSLois Curfman McInnes 332ca3fa75bSLois Curfman McInnes /* Free work space */ 3339566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isrow,&irow)); 3349566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_local,&icol)); 3359566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 336ca3fa75bSLois Curfman McInnes *B = newmat; 337ca3fa75bSLois Curfman McInnes PetscFunctionReturn(0); 338ca3fa75bSLois Curfman McInnes } 339ca3fa75bSLois Curfman McInnes 340637a0070SStefano Zampini PetscErrorCode MatDenseRestoreArray_MPIDense(Mat A,PetscScalar **array) 341ff14e315SSatish Balay { 34273a71a0fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 34373a71a0fSBarry Smith 3443a40ed3dSBarry Smith PetscFunctionBegin; 3459566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(a->A,array)); 3463a40ed3dSBarry Smith PetscFunctionReturn(0); 347ff14e315SSatish Balay } 348ff14e315SSatish Balay 349637a0070SStefano Zampini PetscErrorCode MatDenseRestoreArrayRead_MPIDense(Mat A,const PetscScalar **array) 3508572280aSBarry Smith { 3518572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 3528572280aSBarry Smith 3538572280aSBarry Smith PetscFunctionBegin; 3549566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A,array)); 3558572280aSBarry Smith PetscFunctionReturn(0); 3568572280aSBarry Smith } 3578572280aSBarry Smith 3586947451fSStefano Zampini PetscErrorCode MatDenseRestoreArrayWrite_MPIDense(Mat A,PetscScalar **array) 3596947451fSStefano Zampini { 3606947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 3616947451fSStefano Zampini 3626947451fSStefano Zampini PetscFunctionBegin; 3639566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(a->A,array)); 3646947451fSStefano Zampini PetscFunctionReturn(0); 3656947451fSStefano Zampini } 3666947451fSStefano Zampini 367dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode) 3688965ea79SLois Curfman McInnes { 36939ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 37013f74950SBarry Smith PetscInt nstash,reallocs; 3718965ea79SLois Curfman McInnes 3723a40ed3dSBarry Smith PetscFunctionBegin; 3734067683fSStefano Zampini if (mdn->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 3748965ea79SLois Curfman McInnes 3759566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range)); 3769566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs)); 3779566063dSJacob Faibussowitsch PetscCall(PetscInfo(mdn->A,"Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n",nstash,reallocs)); 3783a40ed3dSBarry Smith PetscFunctionReturn(0); 3798965ea79SLois Curfman McInnes } 3808965ea79SLois Curfman McInnes 381dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode) 3828965ea79SLois Curfman McInnes { 38339ddd567SLois Curfman McInnes Mat_MPIDense *mdn=(Mat_MPIDense*)mat->data; 38413f74950SBarry Smith PetscInt i,*row,*col,flg,j,rstart,ncols; 38513f74950SBarry Smith PetscMPIInt n; 38687828ca2SBarry Smith PetscScalar *val; 3878965ea79SLois Curfman McInnes 3883a40ed3dSBarry Smith PetscFunctionBegin; 389910cf402Sprj- if (!mdn->donotstash && !mat->nooffprocentries) { 3908965ea79SLois Curfman McInnes /* wait on receives */ 3917ef1d9bdSSatish Balay while (1) { 3929566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg)); 3937ef1d9bdSSatish Balay if (!flg) break; 3948965ea79SLois Curfman McInnes 3957ef1d9bdSSatish Balay for (i=0; i<n;) { 3967ef1d9bdSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 3972205254eSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 3982205254eSKarl Rupp if (row[j] != rstart) break; 3992205254eSKarl Rupp } 4007ef1d9bdSSatish Balay if (j < n) ncols = j-i; 4017ef1d9bdSSatish Balay else ncols = n-i; 4027ef1d9bdSSatish Balay /* Now assemble all these values with a single function call */ 4039566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,mat->insertmode)); 4047ef1d9bdSSatish Balay i = j; 4058965ea79SLois Curfman McInnes } 4067ef1d9bdSSatish Balay } 4079566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 408910cf402Sprj- } 4098965ea79SLois Curfman McInnes 4109566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mdn->A,mode)); 4119566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mdn->A,mode)); 4123a40ed3dSBarry Smith PetscFunctionReturn(0); 4138965ea79SLois Curfman McInnes } 4148965ea79SLois Curfman McInnes 415dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIDense(Mat A) 4168965ea79SLois Curfman McInnes { 41739ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 4183a40ed3dSBarry Smith 4193a40ed3dSBarry Smith PetscFunctionBegin; 4209566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 4213a40ed3dSBarry Smith PetscFunctionReturn(0); 4228965ea79SLois Curfman McInnes } 4238965ea79SLois Curfman McInnes 424637a0070SStefano Zampini PetscErrorCode MatZeroRows_MPIDense(Mat A,PetscInt n,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 4258965ea79SLois Curfman McInnes { 42639ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 427637a0070SStefano Zampini PetscInt i,len,*lrows; 428637a0070SStefano Zampini 429637a0070SStefano Zampini PetscFunctionBegin; 430637a0070SStefano Zampini /* get locally owned rows */ 4319566063dSJacob Faibussowitsch PetscCall(PetscLayoutMapLocal(A->rmap,n,rows,&len,&lrows,NULL)); 432637a0070SStefano Zampini /* fix right hand side if needed */ 433637a0070SStefano Zampini if (x && b) { 43497b48c8fSBarry Smith const PetscScalar *xx; 43597b48c8fSBarry Smith PetscScalar *bb; 4368965ea79SLois Curfman McInnes 4379566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 4389566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(b, &bb)); 439637a0070SStefano Zampini for (i=0;i<len;++i) bb[lrows[i]] = diag*xx[lrows[i]]; 4409566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 4419566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(b, &bb)); 44297b48c8fSBarry Smith } 4439566063dSJacob Faibussowitsch PetscCall(MatZeroRows(l->A,len,lrows,0.0,NULL,NULL)); 444e2eb51b1SBarry Smith if (diag != 0.0) { 445637a0070SStefano Zampini Vec d; 446b9679d65SBarry Smith 4479566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(A,NULL,&d)); 4489566063dSJacob Faibussowitsch PetscCall(VecSet(d,diag)); 4499566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet(A,d,INSERT_VALUES)); 4509566063dSJacob Faibussowitsch PetscCall(VecDestroy(&d)); 451b9679d65SBarry Smith } 4529566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 4533a40ed3dSBarry Smith PetscFunctionReturn(0); 4548965ea79SLois Curfman McInnes } 4558965ea79SLois Curfman McInnes 456cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMult_SeqDense(Mat,Vec,Vec); 457cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultAdd_SeqDense(Mat,Vec,Vec,Vec); 458cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTranspose_SeqDense(Mat,Vec,Vec); 459cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTransposeAdd_SeqDense(Mat,Vec,Vec,Vec); 460cc2e6a90SBarry Smith 461dfbe8321SBarry Smith PetscErrorCode MatMult_MPIDense(Mat mat,Vec xx,Vec yy) 4628965ea79SLois Curfman McInnes { 46339ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 464637a0070SStefano Zampini const PetscScalar *ax; 465637a0070SStefano Zampini PetscScalar *ay; 466d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 467c456f294SBarry Smith 4683a40ed3dSBarry Smith PetscFunctionBegin; 4696f08ad05SPierre Jolivet if (!mdn->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(mat)); 4709566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(xx,&ax,&axmtype)); 4719566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(mdn->lvec,&ay,&aymtype)); 4729566063dSJacob Faibussowitsch PetscCall(PetscSFBcastWithMemTypeBegin(mdn->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPI_REPLACE)); 4739566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ax,ay,MPI_REPLACE)); 4749566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(mdn->lvec,&ay)); 4759566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(xx,&ax)); 4769566063dSJacob Faibussowitsch PetscCall((*mdn->A->ops->mult)(mdn->A,mdn->lvec,yy)); 4773a40ed3dSBarry Smith PetscFunctionReturn(0); 4788965ea79SLois Curfman McInnes } 4798965ea79SLois Curfman McInnes 480dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz) 4818965ea79SLois Curfman McInnes { 48239ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 483637a0070SStefano Zampini const PetscScalar *ax; 484637a0070SStefano Zampini PetscScalar *ay; 485d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 486c456f294SBarry Smith 4873a40ed3dSBarry Smith PetscFunctionBegin; 4886f08ad05SPierre Jolivet if (!mdn->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(mat)); 4899566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(xx,&ax,&axmtype)); 4909566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(mdn->lvec,&ay,&aymtype)); 4919566063dSJacob Faibussowitsch PetscCall(PetscSFBcastWithMemTypeBegin(mdn->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPI_REPLACE)); 4929566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ax,ay,MPI_REPLACE)); 4939566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(mdn->lvec,&ay)); 4949566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(xx,&ax)); 4959566063dSJacob Faibussowitsch PetscCall((*mdn->A->ops->multadd)(mdn->A,mdn->lvec,yy,zz)); 4963a40ed3dSBarry Smith PetscFunctionReturn(0); 4978965ea79SLois Curfman McInnes } 4988965ea79SLois Curfman McInnes 499dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIDense(Mat A,Vec xx,Vec yy) 500096963f5SLois Curfman McInnes { 501096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 502637a0070SStefano Zampini const PetscScalar *ax; 503637a0070SStefano Zampini PetscScalar *ay; 504d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 505096963f5SLois Curfman McInnes 5063a40ed3dSBarry Smith PetscFunctionBegin; 5076f08ad05SPierre Jolivet if (!a->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); 5089566063dSJacob Faibussowitsch PetscCall(VecSet(yy,0.0)); 5099566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A,xx,a->lvec)); 5109566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(a->lvec,&ax,&axmtype)); 5119566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(yy,&ay,&aymtype)); 5129566063dSJacob Faibussowitsch PetscCall(PetscSFReduceWithMemTypeBegin(a->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPIU_SUM)); 5139566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM)); 5149566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(a->lvec,&ax)); 5159566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(yy,&ay)); 5163a40ed3dSBarry Smith PetscFunctionReturn(0); 517096963f5SLois Curfman McInnes } 518096963f5SLois Curfman McInnes 519dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz) 520096963f5SLois Curfman McInnes { 521096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 522637a0070SStefano Zampini const PetscScalar *ax; 523637a0070SStefano Zampini PetscScalar *ay; 524d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 525096963f5SLois Curfman McInnes 5263a40ed3dSBarry Smith PetscFunctionBegin; 5276f08ad05SPierre Jolivet if (!a->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); 5289566063dSJacob Faibussowitsch PetscCall(VecCopy(yy,zz)); 5299566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A,xx,a->lvec)); 5309566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(a->lvec,&ax,&axmtype)); 5319566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(zz,&ay,&aymtype)); 5329566063dSJacob Faibussowitsch PetscCall(PetscSFReduceWithMemTypeBegin(a->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPIU_SUM)); 5339566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM)); 5349566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(a->lvec,&ax)); 5359566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(zz,&ay)); 5363a40ed3dSBarry Smith PetscFunctionReturn(0); 537096963f5SLois Curfman McInnes } 538096963f5SLois Curfman McInnes 539dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIDense(Mat A,Vec v) 5408965ea79SLois Curfman McInnes { 54139ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 542637a0070SStefano Zampini PetscInt lda,len,i,n,m = A->rmap->n,radd; 54387828ca2SBarry Smith PetscScalar *x,zero = 0.0; 544637a0070SStefano Zampini const PetscScalar *av; 545ed3cc1f0SBarry Smith 5463a40ed3dSBarry Smith PetscFunctionBegin; 5479566063dSJacob Faibussowitsch PetscCall(VecSet(v,zero)); 5489566063dSJacob Faibussowitsch PetscCall(VecGetArray(v,&x)); 5499566063dSJacob Faibussowitsch PetscCall(VecGetSize(v,&n)); 55008401ef6SPierre Jolivet PetscCheck(n == A->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec"); 551d0f46423SBarry Smith len = PetscMin(a->A->rmap->n,a->A->cmap->n); 552d0f46423SBarry Smith radd = A->rmap->rstart*m; 5539566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A,&av)); 5549566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 55544cd7ae7SLois Curfman McInnes for (i=0; i<len; i++) { 556637a0070SStefano Zampini x[i] = av[radd + i*lda + i]; 557096963f5SLois Curfman McInnes } 5589566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A,&av)); 5599566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v,&x)); 5603a40ed3dSBarry Smith PetscFunctionReturn(0); 5618965ea79SLois Curfman McInnes } 5628965ea79SLois Curfman McInnes 563dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIDense(Mat mat) 5648965ea79SLois Curfman McInnes { 5653501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 566ed3cc1f0SBarry Smith 5673a40ed3dSBarry Smith PetscFunctionBegin; 568aa482453SBarry Smith #if defined(PETSC_USE_LOG) 569c0aa6a63SJacob Faibussowitsch PetscLogObjectState((PetscObject)mat,"Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT,mat->rmap->N,mat->cmap->N); 5708965ea79SLois Curfman McInnes #endif 5719566063dSJacob Faibussowitsch PetscCall(MatStashDestroy_Private(&mat->stash)); 57228b400f6SJacob Faibussowitsch PetscCheck(!mdn->vecinuse,PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 57328b400f6SJacob Faibussowitsch PetscCheck(!mdn->matinuse,PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 5749566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mdn->A)); 5759566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mdn->lvec)); 5769566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&mdn->Mvctx)); 5779566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mdn->cvec)); 5789566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mdn->cmat)); 57901b82886SBarry Smith 5809566063dSJacob Faibussowitsch PetscCall(PetscFree(mat->data)); 5819566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)mat,NULL)); 5828baccfbdSHong Zhang 5839566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",NULL)); 5849566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseSetLDA_C",NULL)); 5859566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",NULL)); 5869566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",NULL)); 5879566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",NULL)); 5889566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",NULL)); 5899566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayWrite_C",NULL)); 5909566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayWrite_C",NULL)); 5919566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",NULL)); 5929566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",NULL)); 5939566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseReplaceArray_C",NULL)); 5949566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpiaij_mpidense_C",NULL)); 5959566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_mpiaij_C",NULL)); 5968baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 5979566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",NULL)); 5988baccfbdSHong Zhang #endif 599d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 6009566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_scalapack_C",NULL)); 601d24d4204SJose E. Roman #endif 6029566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",NULL)); 6039566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaij_mpidense_C",NULL)); 6049566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaij_C",NULL)); 6056718818eSStefano Zampini #if defined (PETSC_HAVE_CUDA) 6069566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaijcusparse_mpidense_C",NULL)); 6079566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaijcusparse_C",NULL)); 6082e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_mpidensecuda_C",NULL)); 6092e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidensecuda_mpidense_C",NULL)); 6102e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaij_mpidensecuda_C",NULL)); 6112e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaijcusparse_mpidensecuda_C",NULL)); 6122e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidensecuda_mpiaij_C",NULL)); 6132e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidensecuda_mpiaijcusparse_C",NULL)); 6142e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseCUDAGetArray_C",NULL)); 6152e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseCUDAGetArrayRead_C",NULL)); 6162e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseCUDAGetArrayWrite_C",NULL)); 6172e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseCUDARestoreArray_C",NULL)); 6182e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseCUDARestoreArrayRead_C",NULL)); 6192e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseCUDARestoreArrayWrite_C",NULL)); 6202e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseCUDAPlaceArray_C",NULL)); 6212e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseCUDAResetArray_C",NULL)); 6222e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseCUDAReplaceArray_C",NULL)); 6236718818eSStefano Zampini #endif 6249566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",NULL)); 6259566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",NULL)); 6269566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",NULL)); 6279566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",NULL)); 6289566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",NULL)); 6299566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",NULL)); 6309566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",NULL)); 6319566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",NULL)); 6329566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetSubMatrix_C",NULL)); 6339566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreSubMatrix_C",NULL)); 634f8103e6bSStefano Zampini 635f8103e6bSStefano Zampini PetscCall(PetscObjectCompose((PetscObject)mat,"DiagonalBlock",NULL)); 6363a40ed3dSBarry Smith PetscFunctionReturn(0); 6378965ea79SLois Curfman McInnes } 63839ddd567SLois Curfman McInnes 63952c5f739Sprj- PETSC_INTERN PetscErrorCode MatView_SeqDense(Mat,PetscViewer); 64052c5f739Sprj- 6419804daf3SBarry Smith #include <petscdraw.h> 6426849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 6438965ea79SLois Curfman McInnes { 64439ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 645616b8fbbSStefano Zampini PetscMPIInt rank; 64619fd82e9SBarry Smith PetscViewerType vtype; 647ace3abfcSBarry Smith PetscBool iascii,isdraw; 648b0a32e0cSBarry Smith PetscViewer sviewer; 649f3ef73ceSBarry Smith PetscViewerFormat format; 6508965ea79SLois Curfman McInnes 6513a40ed3dSBarry Smith PetscFunctionBegin; 6529566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank)); 6539566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii)); 6549566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw)); 65532077d6dSBarry Smith if (iascii) { 6569566063dSJacob Faibussowitsch PetscCall(PetscViewerGetType(viewer,&vtype)); 6579566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer,&format)); 658456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 6594e220ebcSLois Curfman McInnes MatInfo info; 6609566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat,MAT_LOCAL,&info)); 6619566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 6629566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer," [%d] local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %" PetscInt_FMT " \n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory)); 6639566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 6649566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 6656f08ad05SPierre Jolivet if (mdn->Mvctx) PetscCall(PetscSFView(mdn->Mvctx,viewer)); 6663a40ed3dSBarry Smith PetscFunctionReturn(0); 667fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 6683a40ed3dSBarry Smith PetscFunctionReturn(0); 6698965ea79SLois Curfman McInnes } 670f1af5d2fSBarry Smith } else if (isdraw) { 671b0a32e0cSBarry Smith PetscDraw draw; 672ace3abfcSBarry Smith PetscBool isnull; 673f1af5d2fSBarry Smith 6749566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer,0,&draw)); 6759566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw,&isnull)); 676f1af5d2fSBarry Smith if (isnull) PetscFunctionReturn(0); 677f1af5d2fSBarry Smith } 67877ed5343SBarry Smith 6797da1fb6eSBarry Smith { 6808965ea79SLois Curfman McInnes /* assemble the entire matrix onto first processor. */ 6818965ea79SLois Curfman McInnes Mat A; 682d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,m,row,i,nz; 683ba8c8a56SBarry Smith PetscInt *cols; 684ba8c8a56SBarry Smith PetscScalar *vals; 6858965ea79SLois Curfman McInnes 6869566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat),&A)); 687dd400576SPatrick Sanan if (rank == 0) { 6889566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A,M,N,M,N)); 6893a40ed3dSBarry Smith } else { 6909566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A,0,0,M,N)); 6918965ea79SLois Curfman McInnes } 6927adad957SLisandro Dalcin /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */ 6939566063dSJacob Faibussowitsch PetscCall(MatSetType(A,MATMPIDENSE)); 6949566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(A,NULL)); 6959566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)A)); 6968965ea79SLois Curfman McInnes 69739ddd567SLois Curfman McInnes /* Copy the matrix ... This isn't the most efficient means, 69839ddd567SLois Curfman McInnes but it's quick for now */ 69951022da4SBarry Smith A->insertmode = INSERT_VALUES; 7002205254eSKarl Rupp 7012205254eSKarl Rupp row = mat->rmap->rstart; 7022205254eSKarl Rupp m = mdn->A->rmap->n; 7038965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 7049566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIDense(mat,row,&nz,&cols,&vals)); 7059566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIDense(A,1,&row,nz,cols,vals,INSERT_VALUES)); 7069566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIDense(mat,row,&nz,&cols,&vals)); 70739ddd567SLois Curfman McInnes row++; 7088965ea79SLois Curfman McInnes } 7098965ea79SLois Curfman McInnes 7109566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY)); 7119566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY)); 7129566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer)); 713dd400576SPatrick Sanan if (rank == 0) { 7149566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)((Mat_MPIDense*)(A->data))->A,((PetscObject)mat)->name)); 7159566063dSJacob Faibussowitsch PetscCall(MatView_SeqDense(((Mat_MPIDense*)(A->data))->A,sviewer)); 7168965ea79SLois Curfman McInnes } 7179566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer)); 7189566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 7199566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 7208965ea79SLois Curfman McInnes } 7213a40ed3dSBarry Smith PetscFunctionReturn(0); 7228965ea79SLois Curfman McInnes } 7238965ea79SLois Curfman McInnes 724dfbe8321SBarry Smith PetscErrorCode MatView_MPIDense(Mat mat,PetscViewer viewer) 7258965ea79SLois Curfman McInnes { 726ace3abfcSBarry Smith PetscBool iascii,isbinary,isdraw,issocket; 7278965ea79SLois Curfman McInnes 728433994e6SBarry Smith PetscFunctionBegin; 7299566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii)); 7309566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary)); 7319566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket)); 7329566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw)); 7330f5bd95cSBarry Smith 73432077d6dSBarry Smith if (iascii || issocket || isdraw) { 7359566063dSJacob Faibussowitsch PetscCall(MatView_MPIDense_ASCIIorDraworSocket(mat,viewer)); 7361baa6e33SBarry Smith } else if (isbinary) PetscCall(MatView_Dense_Binary(mat,viewer)); 7373a40ed3dSBarry Smith PetscFunctionReturn(0); 7388965ea79SLois Curfman McInnes } 7398965ea79SLois Curfman McInnes 740dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info) 7418965ea79SLois Curfman McInnes { 7423501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 7433501a2bdSLois Curfman McInnes Mat mdn = mat->A; 7443966268fSBarry Smith PetscLogDouble isend[5],irecv[5]; 7458965ea79SLois Curfman McInnes 7463a40ed3dSBarry Smith PetscFunctionBegin; 7474e220ebcSLois Curfman McInnes info->block_size = 1.0; 7482205254eSKarl Rupp 7499566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mdn,MAT_LOCAL,info)); 7502205254eSKarl Rupp 7514e220ebcSLois Curfman McInnes isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 7524e220ebcSLois Curfman McInnes isend[3] = info->memory; isend[4] = info->mallocs; 7538965ea79SLois Curfman McInnes if (flag == MAT_LOCAL) { 7544e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 7554e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 7564e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 7574e220ebcSLois Curfman McInnes info->memory = isend[3]; 7584e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 7598965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 7601c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_MAX,PetscObjectComm((PetscObject)A))); 7612205254eSKarl Rupp 7624e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7634e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7644e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7654e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7664e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7678965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 7681c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_SUM,PetscObjectComm((PetscObject)A))); 7692205254eSKarl Rupp 7704e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7714e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7724e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7734e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7744e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7758965ea79SLois Curfman McInnes } 7764e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 7774e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 7784e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 7793a40ed3dSBarry Smith PetscFunctionReturn(0); 7808965ea79SLois Curfman McInnes } 7818965ea79SLois Curfman McInnes 782ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIDense(Mat A,MatOption op,PetscBool flg) 7838965ea79SLois Curfman McInnes { 78439ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 7858965ea79SLois Curfman McInnes 7863a40ed3dSBarry Smith PetscFunctionBegin; 78712c028f9SKris Buschelman switch (op) { 788512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 78912c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 79012c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 79143674050SBarry Smith MatCheckPreallocated(A,1); 7929566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A,op,flg)); 79312c028f9SKris Buschelman break; 79412c028f9SKris Buschelman case MAT_ROW_ORIENTED: 79543674050SBarry Smith MatCheckPreallocated(A,1); 7964e0d8c25SBarry Smith a->roworiented = flg; 7979566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A,op,flg)); 79812c028f9SKris Buschelman break; 7998c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 80013fa8e87SLisandro Dalcin case MAT_KEEP_NONZERO_PATTERN: 80112c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 802071fcb05SBarry Smith case MAT_SORTED_FULL: 8039566063dSJacob Faibussowitsch PetscCall(PetscInfo(A,"Option %s ignored\n",MatOptions[op])); 80412c028f9SKris Buschelman break; 80512c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 8064e0d8c25SBarry Smith a->donotstash = flg; 80712c028f9SKris Buschelman break; 80877e54ba9SKris Buschelman case MAT_SYMMETRIC: 80977e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 8109a4540c5SBarry Smith case MAT_HERMITIAN: 8119a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 812600fe468SBarry Smith case MAT_IGNORE_LOWER_TRIANGULAR: 8135d7aebe8SStefano Zampini case MAT_IGNORE_ZERO_ENTRIES: 8149566063dSJacob Faibussowitsch PetscCall(PetscInfo(A,"Option %s ignored\n",MatOptions[op])); 81577e54ba9SKris Buschelman break; 81612c028f9SKris Buschelman default: 81798921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %s",MatOptions[op]); 8183a40ed3dSBarry Smith } 8193a40ed3dSBarry Smith PetscFunctionReturn(0); 8208965ea79SLois Curfman McInnes } 8218965ea79SLois Curfman McInnes 822dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIDense(Mat A,Vec ll,Vec rr) 8235b2fa520SLois Curfman McInnes { 8245b2fa520SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 825637a0070SStefano Zampini const PetscScalar *l; 826637a0070SStefano Zampini PetscScalar x,*v,*vv,*r; 827637a0070SStefano Zampini PetscInt i,j,s2a,s3a,s2,s3,m=mdn->A->rmap->n,n=mdn->A->cmap->n,lda; 8285b2fa520SLois Curfman McInnes 8295b2fa520SLois Curfman McInnes PetscFunctionBegin; 8309566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(mdn->A,&vv)); 8319566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(mdn->A,&lda)); 8329566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A,&s2,&s3)); 8335b2fa520SLois Curfman McInnes if (ll) { 8349566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll,&s2a)); 83508401ef6SPierre Jolivet PetscCheck(s2a == s2,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vector non-conforming local size, %" PetscInt_FMT " != %" PetscInt_FMT, s2a, s2); 8369566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(ll,&l)); 8375b2fa520SLois Curfman McInnes for (i=0; i<m; i++) { 8385b2fa520SLois Curfman McInnes x = l[i]; 839637a0070SStefano Zampini v = vv + i; 840637a0070SStefano Zampini for (j=0; j<n; j++) { (*v) *= x; v+= lda;} 8415b2fa520SLois Curfman McInnes } 8429566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(ll,&l)); 8439566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(1.0*n*m)); 8445b2fa520SLois Curfman McInnes } 8455b2fa520SLois Curfman McInnes if (rr) { 846637a0070SStefano Zampini const PetscScalar *ar; 847637a0070SStefano Zampini 8489566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr,&s3a)); 84908401ef6SPierre Jolivet PetscCheck(s3a == s3,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vec non-conforming local size, %" PetscInt_FMT " != %" PetscInt_FMT ".", s3a, s3); 8509566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(rr,&ar)); 8516f08ad05SPierre Jolivet if (!mdn->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); 8529566063dSJacob Faibussowitsch PetscCall(VecGetArray(mdn->lvec,&r)); 8539566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(mdn->Mvctx,MPIU_SCALAR,ar,r,MPI_REPLACE)); 8549566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ar,r,MPI_REPLACE)); 8559566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(rr,&ar)); 8565b2fa520SLois Curfman McInnes for (i=0; i<n; i++) { 8575b2fa520SLois Curfman McInnes x = r[i]; 858637a0070SStefano Zampini v = vv + i*lda; 8592205254eSKarl Rupp for (j=0; j<m; j++) (*v++) *= x; 8605b2fa520SLois Curfman McInnes } 8619566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mdn->lvec,&r)); 8629566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(1.0*n*m)); 8635b2fa520SLois Curfman McInnes } 8649566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(mdn->A,&vv)); 8655b2fa520SLois Curfman McInnes PetscFunctionReturn(0); 8665b2fa520SLois Curfman McInnes } 8675b2fa520SLois Curfman McInnes 868dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIDense(Mat A,NormType type,PetscReal *nrm) 869096963f5SLois Curfman McInnes { 8703501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 87113f74950SBarry Smith PetscInt i,j; 872616b8fbbSStefano Zampini PetscMPIInt size; 873329f5518SBarry Smith PetscReal sum = 0.0; 874637a0070SStefano Zampini const PetscScalar *av,*v; 8753501a2bdSLois Curfman McInnes 8763a40ed3dSBarry Smith PetscFunctionBegin; 8779566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(mdn->A,&av)); 878637a0070SStefano Zampini v = av; 8799566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A),&size)); 880616b8fbbSStefano Zampini if (size == 1) { 8819566063dSJacob Faibussowitsch PetscCall(MatNorm(mdn->A,type,nrm)); 8823501a2bdSLois Curfman McInnes } else { 8833501a2bdSLois Curfman McInnes if (type == NORM_FROBENIUS) { 884d0f46423SBarry Smith for (i=0; i<mdn->A->cmap->n*mdn->A->rmap->n; i++) { 885329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 8863501a2bdSLois Curfman McInnes } 8871c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A))); 8888f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 8899566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0*mdn->A->cmap->n*mdn->A->rmap->n)); 8903a40ed3dSBarry Smith } else if (type == NORM_1) { 891329f5518SBarry Smith PetscReal *tmp,*tmp2; 8929566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(A->cmap->N,&tmp,A->cmap->N,&tmp2)); 893064f8208SBarry Smith *nrm = 0.0; 894637a0070SStefano Zampini v = av; 895d0f46423SBarry Smith for (j=0; j<mdn->A->cmap->n; j++) { 896d0f46423SBarry Smith for (i=0; i<mdn->A->rmap->n; i++) { 89767e560aaSBarry Smith tmp[j] += PetscAbsScalar(*v); v++; 8983501a2bdSLois Curfman McInnes } 8993501a2bdSLois Curfman McInnes } 9001c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(tmp,tmp2,A->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A))); 901d0f46423SBarry Smith for (j=0; j<A->cmap->N; j++) { 902064f8208SBarry Smith if (tmp2[j] > *nrm) *nrm = tmp2[j]; 9033501a2bdSLois Curfman McInnes } 9049566063dSJacob Faibussowitsch PetscCall(PetscFree2(tmp,tmp2)); 9059566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(A->cmap->n*A->rmap->n)); 9063a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 907329f5518SBarry Smith PetscReal ntemp; 9089566063dSJacob Faibussowitsch PetscCall(MatNorm(mdn->A,type,&ntemp)); 9091c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&ntemp,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A))); 910ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"No support for two norm"); 9113501a2bdSLois Curfman McInnes } 9129566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(mdn->A,&av)); 9133a40ed3dSBarry Smith PetscFunctionReturn(0); 9143501a2bdSLois Curfman McInnes } 9153501a2bdSLois Curfman McInnes 916fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIDense(Mat A,MatReuse reuse,Mat *matout) 9173501a2bdSLois Curfman McInnes { 9183501a2bdSLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 9193501a2bdSLois Curfman McInnes Mat B; 920d0f46423SBarry Smith PetscInt M = A->rmap->N,N = A->cmap->N,m,n,*rwork,rstart = A->rmap->rstart; 921637a0070SStefano Zampini PetscInt j,i,lda; 92287828ca2SBarry Smith PetscScalar *v; 9233501a2bdSLois Curfman McInnes 9243a40ed3dSBarry Smith PetscFunctionBegin; 925cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 9269566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&B)); 9279566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B,A->cmap->n,A->rmap->n,N,M)); 9289566063dSJacob Faibussowitsch PetscCall(MatSetType(B,((PetscObject)A)->type_name)); 9299566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(B,NULL)); 930637a0070SStefano Zampini } else B = *matout; 9313501a2bdSLois Curfman McInnes 932637a0070SStefano Zampini m = a->A->rmap->n; n = a->A->cmap->n; 9339566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A,(const PetscScalar**)&v)); 9349566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 9359566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m,&rwork)); 9363501a2bdSLois Curfman McInnes for (i=0; i<m; i++) rwork[i] = rstart + i; 9371acff37aSSatish Balay for (j=0; j<n; j++) { 9389566063dSJacob Faibussowitsch PetscCall(MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES)); 939637a0070SStefano Zampini v += lda; 9403501a2bdSLois Curfman McInnes } 9419566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A,(const PetscScalar**)&v)); 9429566063dSJacob Faibussowitsch PetscCall(PetscFree(rwork)); 9439566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY)); 9449566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY)); 945cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) { 9463501a2bdSLois Curfman McInnes *matout = B; 9473501a2bdSLois Curfman McInnes } else { 9489566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(A,&B)); 9493501a2bdSLois Curfman McInnes } 9503a40ed3dSBarry Smith PetscFunctionReturn(0); 951096963f5SLois Curfman McInnes } 952096963f5SLois Curfman McInnes 9536849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat*); 95452c5f739Sprj- PETSC_INTERN PetscErrorCode MatScale_MPIDense(Mat,PetscScalar); 9558965ea79SLois Curfman McInnes 9564994cf47SJed Brown PetscErrorCode MatSetUp_MPIDense(Mat A) 957273d9f13SBarry Smith { 958273d9f13SBarry Smith PetscFunctionBegin; 9599566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->rmap)); 9609566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->cmap)); 96118992e5dSStefano Zampini if (!A->preallocated) { 9629566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(A,NULL)); 96318992e5dSStefano Zampini } 964273d9f13SBarry Smith PetscFunctionReturn(0); 965273d9f13SBarry Smith } 966273d9f13SBarry Smith 967488007eeSBarry Smith PetscErrorCode MatAXPY_MPIDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str) 968488007eeSBarry Smith { 969488007eeSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)Y->data, *B = (Mat_MPIDense*)X->data; 970488007eeSBarry Smith 971488007eeSBarry Smith PetscFunctionBegin; 9729566063dSJacob Faibussowitsch PetscCall(MatAXPY(A->A,alpha,B->A,str)); 973488007eeSBarry Smith PetscFunctionReturn(0); 974488007eeSBarry Smith } 975488007eeSBarry Smith 9767087cfbeSBarry Smith PetscErrorCode MatConjugate_MPIDense(Mat mat) 977ba337c44SJed Brown { 978ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)mat->data; 979ba337c44SJed Brown 980ba337c44SJed Brown PetscFunctionBegin; 9819566063dSJacob Faibussowitsch PetscCall(MatConjugate(a->A)); 982ba337c44SJed Brown PetscFunctionReturn(0); 983ba337c44SJed Brown } 984ba337c44SJed Brown 985ba337c44SJed Brown PetscErrorCode MatRealPart_MPIDense(Mat A) 986ba337c44SJed Brown { 987ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 988ba337c44SJed Brown 989ba337c44SJed Brown PetscFunctionBegin; 9909566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 991ba337c44SJed Brown PetscFunctionReturn(0); 992ba337c44SJed Brown } 993ba337c44SJed Brown 994ba337c44SJed Brown PetscErrorCode MatImaginaryPart_MPIDense(Mat A) 995ba337c44SJed Brown { 996ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 997ba337c44SJed Brown 998ba337c44SJed Brown PetscFunctionBegin; 9999566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 1000ba337c44SJed Brown PetscFunctionReturn(0); 1001ba337c44SJed Brown } 1002ba337c44SJed Brown 100349a6ff4bSBarry Smith static PetscErrorCode MatGetColumnVector_MPIDense(Mat A,Vec v,PetscInt col) 100449a6ff4bSBarry Smith { 1005637a0070SStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*) A->data; 100649a6ff4bSBarry Smith 100749a6ff4bSBarry Smith PetscFunctionBegin; 100828b400f6SJacob Faibussowitsch PetscCheck(a->A,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Missing local matrix"); 100928b400f6SJacob Faibussowitsch PetscCheck(a->A->ops->getcolumnvector,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Missing get column operation"); 10109566063dSJacob Faibussowitsch PetscCall((*a->A->ops->getcolumnvector)(a->A,v,col)); 101149a6ff4bSBarry Smith PetscFunctionReturn(0); 101249a6ff4bSBarry Smith } 101349a6ff4bSBarry Smith 1014857cbf51SRichard Tran Mills PETSC_INTERN PetscErrorCode MatGetColumnReductions_SeqDense(Mat,PetscInt,PetscReal*); 101552c5f739Sprj- 1016857cbf51SRichard Tran Mills PetscErrorCode MatGetColumnReductions_MPIDense(Mat A,PetscInt type,PetscReal *reductions) 10170716a85fSBarry Smith { 1018a873a8cdSSam Reynolds PetscInt i,m,n; 10190716a85fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*) A->data; 10200716a85fSBarry Smith PetscReal *work; 10210716a85fSBarry Smith 10220716a85fSBarry Smith PetscFunctionBegin; 10239566063dSJacob Faibussowitsch PetscCall(MatGetSize(A,&m,&n)); 10249566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n,&work)); 1025857cbf51SRichard Tran Mills if (type == REDUCTION_MEAN_REALPART) { 10269566063dSJacob Faibussowitsch PetscCall(MatGetColumnReductions_SeqDense(a->A,(PetscInt)REDUCTION_SUM_REALPART,work)); 1027857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_IMAGINARYPART) { 10289566063dSJacob Faibussowitsch PetscCall(MatGetColumnReductions_SeqDense(a->A,(PetscInt)REDUCTION_SUM_IMAGINARYPART,work)); 1029a873a8cdSSam Reynolds } else { 10309566063dSJacob Faibussowitsch PetscCall(MatGetColumnReductions_SeqDense(a->A,type,work)); 1031a873a8cdSSam Reynolds } 1032857cbf51SRichard Tran Mills if (type == NORM_2) { 10330716a85fSBarry Smith for (i=0; i<n; i++) work[i] *= work[i]; 10340716a85fSBarry Smith } 1035857cbf51SRichard Tran Mills if (type == NORM_INFINITY) { 10361c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work,reductions,n,MPIU_REAL,MPIU_MAX,A->hdr.comm)); 10370716a85fSBarry Smith } else { 10381c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work,reductions,n,MPIU_REAL,MPIU_SUM,A->hdr.comm)); 10390716a85fSBarry Smith } 10409566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 1041857cbf51SRichard Tran Mills if (type == NORM_2) { 1042a873a8cdSSam Reynolds for (i=0; i<n; i++) reductions[i] = PetscSqrtReal(reductions[i]); 1043857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 1044a873a8cdSSam Reynolds for (i=0; i<n; i++) reductions[i] /= m; 10450716a85fSBarry Smith } 10460716a85fSBarry Smith PetscFunctionReturn(0); 10470716a85fSBarry Smith } 10480716a85fSBarry Smith 1049637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1050126e4e93SJose E. Roman PetscErrorCode MatShift_MPIDenseCUDA(Mat A,PetscScalar alpha) 1051126e4e93SJose E. Roman { 1052126e4e93SJose E. Roman PetscScalar *da; 1053126e4e93SJose E. Roman PetscInt lda; 1054126e4e93SJose E. Roman 1055126e4e93SJose E. Roman PetscFunctionBegin; 1056126e4e93SJose E. Roman PetscCall(MatDenseCUDAGetArray(A,&da)); 1057126e4e93SJose E. Roman PetscCall(MatDenseGetLDA(A,&lda)); 1058126e4e93SJose E. Roman PetscCall(PetscInfo(A,"Performing Shift on backend\n")); 1059126e4e93SJose E. Roman PetscCall(MatShift_DenseCUDA_Private(da,alpha,lda,A->rmap->rstart,A->rmap->rend,A->cmap->N)); 1060126e4e93SJose E. Roman PetscCall(MatDenseCUDARestoreArray(A,&da)); 1061126e4e93SJose E. Roman PetscFunctionReturn(0); 1062126e4e93SJose E. Roman } 1063126e4e93SJose E. Roman 10646947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVec_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10656947451fSStefano Zampini { 10666947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10676947451fSStefano Zampini PetscInt lda; 10686947451fSStefano Zampini 10696947451fSStefano Zampini PetscFunctionBegin; 107028b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 107128b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 10726947451fSStefano Zampini if (!a->cvec) { 10739566063dSJacob Faibussowitsch PetscCall(VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 10749566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec)); 10756947451fSStefano Zampini } 10766947451fSStefano Zampini a->vecinuse = col + 1; 10779566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 10789566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArray(a->A,(PetscScalar**)&a->ptrinuse)); 10799566063dSJacob Faibussowitsch PetscCall(VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 10806947451fSStefano Zampini *v = a->cvec; 10816947451fSStefano Zampini PetscFunctionReturn(0); 10826947451fSStefano Zampini } 10836947451fSStefano Zampini 10846947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVec_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10856947451fSStefano Zampini { 10866947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10876947451fSStefano Zampini 10886947451fSStefano Zampini PetscFunctionBegin; 108928b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 109028b400f6SJacob Faibussowitsch PetscCheck(a->cvec,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector"); 10916947451fSStefano Zampini a->vecinuse = 0; 10929566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArray(a->A,(PetscScalar**)&a->ptrinuse)); 10939566063dSJacob Faibussowitsch PetscCall(VecCUDAResetArray(a->cvec)); 10946947451fSStefano Zampini *v = NULL; 10956947451fSStefano Zampini PetscFunctionReturn(0); 10966947451fSStefano Zampini } 10976947451fSStefano Zampini 10986947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecRead_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10996947451fSStefano Zampini { 11006947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 11016947451fSStefano Zampini PetscInt lda; 11026947451fSStefano Zampini 11036947451fSStefano Zampini PetscFunctionBegin; 110428b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 110528b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 11066947451fSStefano Zampini if (!a->cvec) { 11079566063dSJacob Faibussowitsch PetscCall(VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 11089566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec)); 11096947451fSStefano Zampini } 11106947451fSStefano Zampini a->vecinuse = col + 1; 11119566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 11129566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArrayRead(a->A,&a->ptrinuse)); 11139566063dSJacob Faibussowitsch PetscCall(VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 11149566063dSJacob Faibussowitsch PetscCall(VecLockReadPush(a->cvec)); 11156947451fSStefano Zampini *v = a->cvec; 11166947451fSStefano Zampini PetscFunctionReturn(0); 11176947451fSStefano Zampini } 11186947451fSStefano Zampini 11196947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecRead_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 11206947451fSStefano Zampini { 11216947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 11226947451fSStefano Zampini 11236947451fSStefano Zampini PetscFunctionBegin; 112428b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 112528b400f6SJacob Faibussowitsch PetscCheck(a->cvec,PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 11266947451fSStefano Zampini a->vecinuse = 0; 11279566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArrayRead(a->A,&a->ptrinuse)); 11289566063dSJacob Faibussowitsch PetscCall(VecLockReadPop(a->cvec)); 11299566063dSJacob Faibussowitsch PetscCall(VecCUDAResetArray(a->cvec)); 11306947451fSStefano Zampini *v = NULL; 11316947451fSStefano Zampini PetscFunctionReturn(0); 11326947451fSStefano Zampini } 11336947451fSStefano Zampini 11346947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecWrite_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 11356947451fSStefano Zampini { 11366947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 11376947451fSStefano Zampini PetscInt lda; 11386947451fSStefano Zampini 11396947451fSStefano Zampini PetscFunctionBegin; 114028b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 114128b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 11426947451fSStefano Zampini if (!a->cvec) { 11439566063dSJacob Faibussowitsch PetscCall(VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 11449566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec)); 11456947451fSStefano Zampini } 11466947451fSStefano Zampini a->vecinuse = col + 1; 11479566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 11489566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArrayWrite(a->A,(PetscScalar**)&a->ptrinuse)); 11499566063dSJacob Faibussowitsch PetscCall(VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 11506947451fSStefano Zampini *v = a->cvec; 11516947451fSStefano Zampini PetscFunctionReturn(0); 11526947451fSStefano Zampini } 11536947451fSStefano Zampini 11546947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 11556947451fSStefano Zampini { 11566947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 11576947451fSStefano Zampini 11586947451fSStefano Zampini PetscFunctionBegin; 115928b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 116028b400f6SJacob Faibussowitsch PetscCheck(a->cvec,PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 11616947451fSStefano Zampini a->vecinuse = 0; 11629566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArrayWrite(a->A,(PetscScalar**)&a->ptrinuse)); 11639566063dSJacob Faibussowitsch PetscCall(VecCUDAResetArray(a->cvec)); 11646947451fSStefano Zampini *v = NULL; 11656947451fSStefano Zampini PetscFunctionReturn(0); 11666947451fSStefano Zampini } 11676947451fSStefano Zampini 1168637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAPlaceArray_MPIDenseCUDA(Mat A, const PetscScalar *a) 1169637a0070SStefano Zampini { 1170637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1171637a0070SStefano Zampini 1172637a0070SStefano Zampini PetscFunctionBegin; 117328b400f6SJacob Faibussowitsch PetscCheck(!l->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 117428b400f6SJacob Faibussowitsch PetscCheck(!l->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 11759566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAPlaceArray(l->A,a)); 1176637a0070SStefano Zampini PetscFunctionReturn(0); 1177637a0070SStefano Zampini } 1178637a0070SStefano Zampini 1179637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAResetArray_MPIDenseCUDA(Mat A) 1180637a0070SStefano Zampini { 1181637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1182637a0070SStefano Zampini 1183637a0070SStefano Zampini PetscFunctionBegin; 118428b400f6SJacob Faibussowitsch PetscCheck(!l->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 118528b400f6SJacob Faibussowitsch PetscCheck(!l->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 11869566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAResetArray(l->A)); 1187637a0070SStefano Zampini PetscFunctionReturn(0); 1188637a0070SStefano Zampini } 1189637a0070SStefano Zampini 1190d5ea218eSStefano Zampini static PetscErrorCode MatDenseCUDAReplaceArray_MPIDenseCUDA(Mat A, const PetscScalar *a) 1191d5ea218eSStefano Zampini { 1192d5ea218eSStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1193d5ea218eSStefano Zampini 1194d5ea218eSStefano Zampini PetscFunctionBegin; 119528b400f6SJacob Faibussowitsch PetscCheck(!l->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 119628b400f6SJacob Faibussowitsch PetscCheck(!l->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 11979566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAReplaceArray(l->A,a)); 1198d5ea218eSStefano Zampini PetscFunctionReturn(0); 1199d5ea218eSStefano Zampini } 1200d5ea218eSStefano Zampini 1201637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArrayWrite_MPIDenseCUDA(Mat A, PetscScalar **a) 1202637a0070SStefano Zampini { 1203637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1204637a0070SStefano Zampini 1205637a0070SStefano Zampini PetscFunctionBegin; 12069566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArrayWrite(l->A,a)); 1207637a0070SStefano Zampini PetscFunctionReturn(0); 1208637a0070SStefano Zampini } 1209637a0070SStefano Zampini 1210637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArrayWrite_MPIDenseCUDA(Mat A, PetscScalar **a) 1211637a0070SStefano Zampini { 1212637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1213637a0070SStefano Zampini 1214637a0070SStefano Zampini PetscFunctionBegin; 12159566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArrayWrite(l->A,a)); 1216637a0070SStefano Zampini PetscFunctionReturn(0); 1217637a0070SStefano Zampini } 1218637a0070SStefano Zampini 1219637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArrayRead_MPIDenseCUDA(Mat A, const PetscScalar **a) 1220637a0070SStefano Zampini { 1221637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1222637a0070SStefano Zampini 1223637a0070SStefano Zampini PetscFunctionBegin; 12249566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArrayRead(l->A,a)); 1225637a0070SStefano Zampini PetscFunctionReturn(0); 1226637a0070SStefano Zampini } 1227637a0070SStefano Zampini 1228637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArrayRead_MPIDenseCUDA(Mat A, const PetscScalar **a) 1229637a0070SStefano Zampini { 1230637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1231637a0070SStefano Zampini 1232637a0070SStefano Zampini PetscFunctionBegin; 12339566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArrayRead(l->A,a)); 1234637a0070SStefano Zampini PetscFunctionReturn(0); 1235637a0070SStefano Zampini } 1236637a0070SStefano Zampini 1237637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArray_MPIDenseCUDA(Mat A, PetscScalar **a) 1238637a0070SStefano Zampini { 1239637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1240637a0070SStefano Zampini 1241637a0070SStefano Zampini PetscFunctionBegin; 12429566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArray(l->A,a)); 1243637a0070SStefano Zampini PetscFunctionReturn(0); 1244637a0070SStefano Zampini } 1245637a0070SStefano Zampini 1246637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArray_MPIDenseCUDA(Mat A, PetscScalar **a) 1247637a0070SStefano Zampini { 1248637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1249637a0070SStefano Zampini 1250637a0070SStefano Zampini PetscFunctionBegin; 12519566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArray(l->A,a)); 1252637a0070SStefano Zampini PetscFunctionReturn(0); 1253637a0070SStefano Zampini } 1254637a0070SStefano Zampini 12556947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecWrite_MPIDense(Mat,PetscInt,Vec*); 12566947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecRead_MPIDense(Mat,PetscInt,Vec*); 12576947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVec_MPIDense(Mat,PetscInt,Vec*); 12586947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDense(Mat,PetscInt,Vec*); 12596947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecRead_MPIDense(Mat,PetscInt,Vec*); 12606947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVec_MPIDense(Mat,PetscInt,Vec*); 12615ea7661aSPierre Jolivet static PetscErrorCode MatDenseRestoreSubMatrix_MPIDense(Mat,Mat*); 12626947451fSStefano Zampini 1263637a0070SStefano Zampini static PetscErrorCode MatBindToCPU_MPIDenseCUDA(Mat mat,PetscBool bind) 1264637a0070SStefano Zampini { 1265637a0070SStefano Zampini Mat_MPIDense *d = (Mat_MPIDense*)mat->data; 1266637a0070SStefano Zampini 1267637a0070SStefano Zampini PetscFunctionBegin; 126828b400f6SJacob Faibussowitsch PetscCheck(!d->vecinuse,PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 126928b400f6SJacob Faibussowitsch PetscCheck(!d->matinuse,PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 12701baa6e33SBarry Smith if (d->A) PetscCall(MatBindToCPU(d->A,bind)); 1271637a0070SStefano Zampini mat->boundtocpu = bind; 12726947451fSStefano Zampini if (!bind) { 12736947451fSStefano Zampini PetscBool iscuda; 12746947451fSStefano Zampini 12759566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)d->cvec,VECMPICUDA,&iscuda)); 12766947451fSStefano Zampini if (!iscuda) { 12779566063dSJacob Faibussowitsch PetscCall(VecDestroy(&d->cvec)); 1278616b8fbbSStefano Zampini } 12799566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)d->cmat,MATMPIDENSECUDA,&iscuda)); 1280616b8fbbSStefano Zampini if (!iscuda) { 12819566063dSJacob Faibussowitsch PetscCall(MatDestroy(&d->cmat)); 12826947451fSStefano Zampini } 12839566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDenseCUDA)); 12849566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDenseCUDA)); 12859566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDenseCUDA)); 12869566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDenseCUDA)); 12879566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDenseCUDA)); 12889566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDenseCUDA)); 1289126e4e93SJose E. Roman mat->ops->shift = MatShift_MPIDenseCUDA; 12906947451fSStefano Zampini } else { 12919566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDense)); 12929566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDense)); 12939566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDense)); 12949566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDense)); 12959566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDense)); 12969566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDense)); 1297126e4e93SJose E. Roman mat->ops->shift = MatShift_MPIDense; 1298616b8fbbSStefano Zampini } 12991baa6e33SBarry Smith if (d->cmat) PetscCall(MatBindToCPU(d->cmat,bind)); 1300637a0070SStefano Zampini PetscFunctionReturn(0); 1301637a0070SStefano Zampini } 1302637a0070SStefano Zampini 1303637a0070SStefano Zampini PetscErrorCode MatMPIDenseCUDASetPreallocation(Mat A, PetscScalar *d_data) 1304637a0070SStefano Zampini { 1305637a0070SStefano Zampini Mat_MPIDense *d = (Mat_MPIDense*)A->data; 1306637a0070SStefano Zampini PetscBool iscuda; 1307637a0070SStefano Zampini 1308637a0070SStefano Zampini PetscFunctionBegin; 1309d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 13109566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A,MATMPIDENSECUDA,&iscuda)); 1311637a0070SStefano Zampini if (!iscuda) PetscFunctionReturn(0); 13129566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->rmap)); 13139566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->cmap)); 1314637a0070SStefano Zampini if (!d->A) { 13159566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF,&d->A)); 13169566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)d->A)); 13179566063dSJacob Faibussowitsch PetscCall(MatSetSizes(d->A,A->rmap->n,A->cmap->N,A->rmap->n,A->cmap->N)); 1318637a0070SStefano Zampini } 13199566063dSJacob Faibussowitsch PetscCall(MatSetType(d->A,MATSEQDENSECUDA)); 13209566063dSJacob Faibussowitsch PetscCall(MatSeqDenseCUDASetPreallocation(d->A,d_data)); 1321637a0070SStefano Zampini A->preallocated = PETSC_TRUE; 13226f08ad05SPierre Jolivet A->assembled = PETSC_TRUE; 1323637a0070SStefano Zampini PetscFunctionReturn(0); 1324637a0070SStefano Zampini } 1325637a0070SStefano Zampini #endif 1326637a0070SStefano Zampini 132773a71a0fSBarry Smith static PetscErrorCode MatSetRandom_MPIDense(Mat x,PetscRandom rctx) 132873a71a0fSBarry Smith { 132973a71a0fSBarry Smith Mat_MPIDense *d = (Mat_MPIDense*)x->data; 133073a71a0fSBarry Smith 133173a71a0fSBarry Smith PetscFunctionBegin; 13329566063dSJacob Faibussowitsch PetscCall(MatSetRandom(d->A,rctx)); 133373a71a0fSBarry Smith PetscFunctionReturn(0); 133473a71a0fSBarry Smith } 133573a71a0fSBarry Smith 13363b49f96aSBarry Smith static PetscErrorCode MatMissingDiagonal_MPIDense(Mat A,PetscBool *missing,PetscInt *d) 13373b49f96aSBarry Smith { 13383b49f96aSBarry Smith PetscFunctionBegin; 13393b49f96aSBarry Smith *missing = PETSC_FALSE; 13403b49f96aSBarry Smith PetscFunctionReturn(0); 13413b49f96aSBarry Smith } 13423b49f96aSBarry Smith 13434222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat,Mat,PetscReal,Mat); 1344cc48ffa7SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat,Mat,Mat); 13456718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat,Mat,PetscReal,Mat); 1346a1f9a5e6SStefano Zampini static PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat,Mat,Mat); 13476718818eSStefano Zampini static PetscErrorCode MatEqual_MPIDense(Mat,Mat,PetscBool*); 13486718818eSStefano Zampini static PetscErrorCode MatLoad_MPIDense(Mat,PetscViewer); 1349cc48ffa7SToby Isaac 13508965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/ 135109dc0095SBarry Smith static struct _MatOps MatOps_Values = { MatSetValues_MPIDense, 135209dc0095SBarry Smith MatGetRow_MPIDense, 135309dc0095SBarry Smith MatRestoreRow_MPIDense, 135409dc0095SBarry Smith MatMult_MPIDense, 135597304618SKris Buschelman /* 4*/ MatMultAdd_MPIDense, 13567c922b88SBarry Smith MatMultTranspose_MPIDense, 13577c922b88SBarry Smith MatMultTransposeAdd_MPIDense, 1358f4259b30SLisandro Dalcin NULL, 1359f4259b30SLisandro Dalcin NULL, 1360f4259b30SLisandro Dalcin NULL, 1361f4259b30SLisandro Dalcin /* 10*/ NULL, 1362f4259b30SLisandro Dalcin NULL, 1363f4259b30SLisandro Dalcin NULL, 1364f4259b30SLisandro Dalcin NULL, 136509dc0095SBarry Smith MatTranspose_MPIDense, 136697304618SKris Buschelman /* 15*/ MatGetInfo_MPIDense, 13676e4ee0c6SHong Zhang MatEqual_MPIDense, 136809dc0095SBarry Smith MatGetDiagonal_MPIDense, 13695b2fa520SLois Curfman McInnes MatDiagonalScale_MPIDense, 137009dc0095SBarry Smith MatNorm_MPIDense, 137197304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPIDense, 137209dc0095SBarry Smith MatAssemblyEnd_MPIDense, 137309dc0095SBarry Smith MatSetOption_MPIDense, 137409dc0095SBarry Smith MatZeroEntries_MPIDense, 1375d519adbfSMatthew Knepley /* 24*/ MatZeroRows_MPIDense, 1376f4259b30SLisandro Dalcin NULL, 1377f4259b30SLisandro Dalcin NULL, 1378f4259b30SLisandro Dalcin NULL, 1379f4259b30SLisandro Dalcin NULL, 13804994cf47SJed Brown /* 29*/ MatSetUp_MPIDense, 1381f4259b30SLisandro Dalcin NULL, 1382f4259b30SLisandro Dalcin NULL, 1383c56a70eeSBarry Smith MatGetDiagonalBlock_MPIDense, 1384f4259b30SLisandro Dalcin NULL, 1385d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPIDense, 1386f4259b30SLisandro Dalcin NULL, 1387f4259b30SLisandro Dalcin NULL, 1388f4259b30SLisandro Dalcin NULL, 1389f4259b30SLisandro Dalcin NULL, 1390d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPIDense, 13917dae84e0SHong Zhang MatCreateSubMatrices_MPIDense, 1392f4259b30SLisandro Dalcin NULL, 139309dc0095SBarry Smith MatGetValues_MPIDense, 1394a76f77c3SStefano Zampini MatCopy_MPIDense, 1395f4259b30SLisandro Dalcin /* 44*/ NULL, 139609dc0095SBarry Smith MatScale_MPIDense, 13972f605a99SJose E. Roman MatShift_MPIDense, 1398f4259b30SLisandro Dalcin NULL, 1399f4259b30SLisandro Dalcin NULL, 140073a71a0fSBarry Smith /* 49*/ MatSetRandom_MPIDense, 1401f4259b30SLisandro Dalcin NULL, 1402f4259b30SLisandro Dalcin NULL, 1403f4259b30SLisandro Dalcin NULL, 1404f4259b30SLisandro Dalcin NULL, 1405f4259b30SLisandro Dalcin /* 54*/ NULL, 1406f4259b30SLisandro Dalcin NULL, 1407f4259b30SLisandro Dalcin NULL, 1408f4259b30SLisandro Dalcin NULL, 1409f4259b30SLisandro Dalcin NULL, 14107dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPIDense, 1411b9b97703SBarry Smith MatDestroy_MPIDense, 1412b9b97703SBarry Smith MatView_MPIDense, 1413f4259b30SLisandro Dalcin NULL, 1414f4259b30SLisandro Dalcin NULL, 1415f4259b30SLisandro Dalcin /* 64*/ NULL, 1416f4259b30SLisandro Dalcin NULL, 1417f4259b30SLisandro Dalcin NULL, 1418f4259b30SLisandro Dalcin NULL, 1419f4259b30SLisandro Dalcin NULL, 1420f4259b30SLisandro Dalcin /* 69*/ NULL, 1421f4259b30SLisandro Dalcin NULL, 1422f4259b30SLisandro Dalcin NULL, 1423f4259b30SLisandro Dalcin NULL, 1424f4259b30SLisandro Dalcin NULL, 1425f4259b30SLisandro Dalcin /* 74*/ NULL, 1426f4259b30SLisandro Dalcin NULL, 1427f4259b30SLisandro Dalcin NULL, 1428f4259b30SLisandro Dalcin NULL, 1429f4259b30SLisandro Dalcin NULL, 1430f4259b30SLisandro Dalcin /* 79*/ NULL, 1431f4259b30SLisandro Dalcin NULL, 1432f4259b30SLisandro Dalcin NULL, 1433f4259b30SLisandro Dalcin NULL, 14345bba2384SShri Abhyankar /* 83*/ MatLoad_MPIDense, 1435f4259b30SLisandro Dalcin NULL, 1436f4259b30SLisandro Dalcin NULL, 1437f4259b30SLisandro Dalcin NULL, 1438f4259b30SLisandro Dalcin NULL, 1439f4259b30SLisandro Dalcin NULL, 1440f4259b30SLisandro Dalcin /* 89*/ NULL, 1441f4259b30SLisandro Dalcin NULL, 1442f4259b30SLisandro Dalcin NULL, 1443f4259b30SLisandro Dalcin NULL, 1444f4259b30SLisandro Dalcin NULL, 1445f4259b30SLisandro Dalcin /* 94*/ NULL, 1446f4259b30SLisandro Dalcin NULL, 14476718818eSStefano Zampini MatMatTransposeMultSymbolic_MPIDense_MPIDense, 1448cc48ffa7SToby Isaac MatMatTransposeMultNumeric_MPIDense_MPIDense, 1449f4259b30SLisandro Dalcin NULL, 14504222ddf1SHong Zhang /* 99*/ MatProductSetFromOptions_MPIDense, 1451f4259b30SLisandro Dalcin NULL, 1452f4259b30SLisandro Dalcin NULL, 1453ba337c44SJed Brown MatConjugate_MPIDense, 1454f4259b30SLisandro Dalcin NULL, 1455f4259b30SLisandro Dalcin /*104*/ NULL, 1456ba337c44SJed Brown MatRealPart_MPIDense, 1457ba337c44SJed Brown MatImaginaryPart_MPIDense, 1458f4259b30SLisandro Dalcin NULL, 1459f4259b30SLisandro Dalcin NULL, 1460f4259b30SLisandro Dalcin /*109*/ NULL, 1461f4259b30SLisandro Dalcin NULL, 1462f4259b30SLisandro Dalcin NULL, 146349a6ff4bSBarry Smith MatGetColumnVector_MPIDense, 14643b49f96aSBarry Smith MatMissingDiagonal_MPIDense, 1465f4259b30SLisandro Dalcin /*114*/ NULL, 1466f4259b30SLisandro Dalcin NULL, 1467f4259b30SLisandro Dalcin NULL, 1468f4259b30SLisandro Dalcin NULL, 1469f4259b30SLisandro Dalcin NULL, 1470f4259b30SLisandro Dalcin /*119*/ NULL, 1471f4259b30SLisandro Dalcin NULL, 1472f4259b30SLisandro Dalcin NULL, 1473f4259b30SLisandro Dalcin NULL, 1474f4259b30SLisandro Dalcin NULL, 1475f4259b30SLisandro Dalcin /*124*/ NULL, 1476a873a8cdSSam Reynolds MatGetColumnReductions_MPIDense, 1477f4259b30SLisandro Dalcin NULL, 1478f4259b30SLisandro Dalcin NULL, 1479f4259b30SLisandro Dalcin NULL, 1480f4259b30SLisandro Dalcin /*129*/ NULL, 1481f4259b30SLisandro Dalcin NULL, 14826718818eSStefano Zampini MatTransposeMatMultSymbolic_MPIDense_MPIDense, 1483cb20be35SHong Zhang MatTransposeMatMultNumeric_MPIDense_MPIDense, 1484f4259b30SLisandro Dalcin NULL, 1485f4259b30SLisandro Dalcin /*134*/ NULL, 1486f4259b30SLisandro Dalcin NULL, 1487f4259b30SLisandro Dalcin NULL, 1488f4259b30SLisandro Dalcin NULL, 1489f4259b30SLisandro Dalcin NULL, 1490f4259b30SLisandro Dalcin /*139*/ NULL, 1491f4259b30SLisandro Dalcin NULL, 1492f4259b30SLisandro Dalcin NULL, 1493f4259b30SLisandro Dalcin NULL, 1494f4259b30SLisandro Dalcin NULL, 14954222ddf1SHong Zhang MatCreateMPIMatConcatenateSeqMat_MPIDense, 1496f4259b30SLisandro Dalcin /*145*/ NULL, 1497f4259b30SLisandro Dalcin NULL, 1498*99a7f59eSMark Adams NULL, 1499*99a7f59eSMark Adams NULL, 1500f4259b30SLisandro Dalcin NULL 1501ba337c44SJed Brown }; 15028965ea79SLois Curfman McInnes 15037087cfbeSBarry Smith PetscErrorCode MatMPIDenseSetPreallocation_MPIDense(Mat mat,PetscScalar *data) 1504a23d5eceSKris Buschelman { 1505637a0070SStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)mat->data; 1506637a0070SStefano Zampini PetscBool iscuda; 1507a23d5eceSKris Buschelman 1508a23d5eceSKris Buschelman PetscFunctionBegin; 150928b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 15109566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 15119566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 1512637a0070SStefano Zampini if (!a->A) { 15139566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF,&a->A)); 15149566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A)); 15159566063dSJacob Faibussowitsch PetscCall(MatSetSizes(a->A,mat->rmap->n,mat->cmap->N,mat->rmap->n,mat->cmap->N)); 1516637a0070SStefano Zampini } 15179566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)mat,MATMPIDENSECUDA,&iscuda)); 15189566063dSJacob Faibussowitsch PetscCall(MatSetType(a->A,iscuda ? MATSEQDENSECUDA : MATSEQDENSE)); 15199566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(a->A,data)); 1520637a0070SStefano Zampini mat->preallocated = PETSC_TRUE; 15216f08ad05SPierre Jolivet mat->assembled = PETSC_TRUE; 1522a23d5eceSKris Buschelman PetscFunctionReturn(0); 1523a23d5eceSKris Buschelman } 1524a23d5eceSKris Buschelman 15254e29119aSPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIDense(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 15264e29119aSPierre Jolivet { 15274e29119aSPierre Jolivet Mat B,C; 15284e29119aSPierre Jolivet 15294e29119aSPierre Jolivet PetscFunctionBegin; 15309566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(A,MAT_INITIAL_MATRIX,&C)); 15319566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqAIJ_SeqDense(C,MATSEQDENSE,MAT_INITIAL_MATRIX,&B)); 15329566063dSJacob Faibussowitsch PetscCall(MatDestroy(&C)); 15334e29119aSPierre Jolivet if (reuse == MAT_REUSE_MATRIX) { 15344e29119aSPierre Jolivet C = *newmat; 15354e29119aSPierre Jolivet } else C = NULL; 15369566063dSJacob Faibussowitsch PetscCall(MatCreateMPIMatConcatenateSeqMat(PetscObjectComm((PetscObject)A),B,A->cmap->n,!C?MAT_INITIAL_MATRIX:MAT_REUSE_MATRIX,&C)); 15379566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 15384e29119aSPierre Jolivet if (reuse == MAT_INPLACE_MATRIX) { 15399566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A,&C)); 15404e29119aSPierre Jolivet } else if (reuse == MAT_INITIAL_MATRIX) *newmat = C; 15414e29119aSPierre Jolivet PetscFunctionReturn(0); 15424e29119aSPierre Jolivet } 15434e29119aSPierre Jolivet 15444e29119aSPierre Jolivet PetscErrorCode MatConvert_MPIDense_MPIAIJ(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 15454e29119aSPierre Jolivet { 15464e29119aSPierre Jolivet Mat B,C; 15474e29119aSPierre Jolivet 15484e29119aSPierre Jolivet PetscFunctionBegin; 15499566063dSJacob Faibussowitsch PetscCall(MatDenseGetLocalMatrix(A,&C)); 15509566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqDense_SeqAIJ(C,MATSEQAIJ,MAT_INITIAL_MATRIX,&B)); 15514e29119aSPierre Jolivet if (reuse == MAT_REUSE_MATRIX) { 15524e29119aSPierre Jolivet C = *newmat; 15534e29119aSPierre Jolivet } else C = NULL; 15549566063dSJacob Faibussowitsch PetscCall(MatCreateMPIMatConcatenateSeqMat(PetscObjectComm((PetscObject)A),B,A->cmap->n,!C?MAT_INITIAL_MATRIX:MAT_REUSE_MATRIX,&C)); 15559566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 15564e29119aSPierre Jolivet if (reuse == MAT_INPLACE_MATRIX) { 15579566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A,&C)); 15584e29119aSPierre Jolivet } else if (reuse == MAT_INITIAL_MATRIX) *newmat = C; 15594e29119aSPierre Jolivet PetscFunctionReturn(0); 15604e29119aSPierre Jolivet } 15614e29119aSPierre Jolivet 156265b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 1563cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIDense_Elemental(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 15648baccfbdSHong Zhang { 15658ea901baSHong Zhang Mat mat_elemental; 156632d7a744SHong Zhang PetscScalar *v; 156732d7a744SHong Zhang PetscInt m=A->rmap->n,N=A->cmap->N,rstart=A->rmap->rstart,i,*rows,*cols; 15688ea901baSHong Zhang 15698baccfbdSHong Zhang PetscFunctionBegin; 1570378336b6SHong Zhang if (reuse == MAT_REUSE_MATRIX) { 1571378336b6SHong Zhang mat_elemental = *newmat; 15729566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(*newmat)); 1573378336b6SHong Zhang } else { 15749566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental)); 15759566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat_elemental,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N)); 15769566063dSJacob Faibussowitsch PetscCall(MatSetType(mat_elemental,MATELEMENTAL)); 15779566063dSJacob Faibussowitsch PetscCall(MatSetUp(mat_elemental)); 15789566063dSJacob Faibussowitsch PetscCall(MatSetOption(mat_elemental,MAT_ROW_ORIENTED,PETSC_FALSE)); 1579378336b6SHong Zhang } 1580378336b6SHong Zhang 15819566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m,&rows,N,&cols)); 158232d7a744SHong Zhang for (i=0; i<N; i++) cols[i] = i; 158332d7a744SHong Zhang for (i=0; i<m; i++) rows[i] = rstart + i; 15848ea901baSHong Zhang 1585637a0070SStefano Zampini /* PETSc-Elemental interface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */ 15869566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(A,&v)); 15879566063dSJacob Faibussowitsch PetscCall(MatSetValues(mat_elemental,m,rows,N,cols,v,ADD_VALUES)); 15889566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY)); 15899566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY)); 15909566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(A,&v)); 15919566063dSJacob Faibussowitsch PetscCall(PetscFree2(rows,cols)); 15928ea901baSHong Zhang 1593511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 15949566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A,&mat_elemental)); 15958ea901baSHong Zhang } else { 15968ea901baSHong Zhang *newmat = mat_elemental; 15978ea901baSHong Zhang } 15988baccfbdSHong Zhang PetscFunctionReturn(0); 15998baccfbdSHong Zhang } 160065b80a83SHong Zhang #endif 16018baccfbdSHong Zhang 1602af53bab2SHong Zhang static PetscErrorCode MatDenseGetColumn_MPIDense(Mat A,PetscInt col,PetscScalar **vals) 160386aefd0dSHong Zhang { 160486aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 160586aefd0dSHong Zhang 160686aefd0dSHong Zhang PetscFunctionBegin; 16079566063dSJacob Faibussowitsch PetscCall(MatDenseGetColumn(mat->A,col,vals)); 160886aefd0dSHong Zhang PetscFunctionReturn(0); 160986aefd0dSHong Zhang } 161086aefd0dSHong Zhang 1611af53bab2SHong Zhang static PetscErrorCode MatDenseRestoreColumn_MPIDense(Mat A,PetscScalar **vals) 161286aefd0dSHong Zhang { 161386aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 161486aefd0dSHong Zhang 161586aefd0dSHong Zhang PetscFunctionBegin; 16169566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreColumn(mat->A,vals)); 161786aefd0dSHong Zhang PetscFunctionReturn(0); 161886aefd0dSHong Zhang } 161986aefd0dSHong Zhang 162094e2cb23SJakub Kruzik PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIDense(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 162194e2cb23SJakub Kruzik { 162294e2cb23SJakub Kruzik Mat_MPIDense *mat; 162394e2cb23SJakub Kruzik PetscInt m,nloc,N; 162494e2cb23SJakub Kruzik 162594e2cb23SJakub Kruzik PetscFunctionBegin; 16269566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat,&m,&N)); 16279566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(inmat,NULL,&nloc)); 162894e2cb23SJakub Kruzik if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 162994e2cb23SJakub Kruzik PetscInt sum; 163094e2cb23SJakub Kruzik 163194e2cb23SJakub Kruzik if (n == PETSC_DECIDE) { 16329566063dSJacob Faibussowitsch PetscCall(PetscSplitOwnership(comm,&n,&N)); 163394e2cb23SJakub Kruzik } 163494e2cb23SJakub Kruzik /* Check sum(n) = N */ 16351c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm)); 163608401ef6SPierre Jolivet PetscCheck(sum == N,PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns %" PetscInt_FMT " != global columns %" PetscInt_FMT,sum,N); 163794e2cb23SJakub Kruzik 16389566063dSJacob Faibussowitsch PetscCall(MatCreateDense(comm,m,n,PETSC_DETERMINE,N,NULL,outmat)); 16399566063dSJacob Faibussowitsch PetscCall(MatSetOption(*outmat,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE)); 164094e2cb23SJakub Kruzik } 164194e2cb23SJakub Kruzik 164294e2cb23SJakub Kruzik /* numeric phase */ 164394e2cb23SJakub Kruzik mat = (Mat_MPIDense*)(*outmat)->data; 16449566063dSJacob Faibussowitsch PetscCall(MatCopy(inmat,mat->A,SAME_NONZERO_PATTERN)); 164594e2cb23SJakub Kruzik PetscFunctionReturn(0); 164694e2cb23SJakub Kruzik } 164794e2cb23SJakub Kruzik 1648637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1649637a0070SStefano Zampini PetscErrorCode MatConvert_MPIDenseCUDA_MPIDense(Mat M,MatType type,MatReuse reuse,Mat *newmat) 1650637a0070SStefano Zampini { 1651637a0070SStefano Zampini Mat B; 1652637a0070SStefano Zampini Mat_MPIDense *m; 1653637a0070SStefano Zampini 1654637a0070SStefano Zampini PetscFunctionBegin; 1655637a0070SStefano Zampini if (reuse == MAT_INITIAL_MATRIX) { 16569566063dSJacob Faibussowitsch PetscCall(MatDuplicate(M,MAT_COPY_VALUES,newmat)); 1657637a0070SStefano Zampini } else if (reuse == MAT_REUSE_MATRIX) { 16589566063dSJacob Faibussowitsch PetscCall(MatCopy(M,*newmat,SAME_NONZERO_PATTERN)); 1659637a0070SStefano Zampini } 1660637a0070SStefano Zampini 1661637a0070SStefano Zampini B = *newmat; 16629566063dSJacob Faibussowitsch PetscCall(MatBindToCPU_MPIDenseCUDA(B,PETSC_TRUE)); 16639566063dSJacob Faibussowitsch PetscCall(PetscFree(B->defaultvectype)); 16649566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(VECSTANDARD,&B->defaultvectype)); 16659566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B,MATMPIDENSE)); 16669566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpidensecuda_mpidense_C",NULL)); 16679566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaij_mpidensecuda_C",NULL)); 16689566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaijcusparse_mpidensecuda_C",NULL)); 16699566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaij_C",NULL)); 16709566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaijcusparse_C",NULL)); 16719566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArray_C",NULL)); 16729566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayRead_C",NULL)); 16739566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayWrite_C",NULL)); 16749566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArray_C",NULL)); 16759566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayRead_C",NULL)); 16769566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayWrite_C",NULL)); 16779566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAPlaceArray_C",NULL)); 16789566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAResetArray_C",NULL)); 16799566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAReplaceArray_C",NULL)); 1680637a0070SStefano Zampini m = (Mat_MPIDense*)(B)->data; 1681637a0070SStefano Zampini if (m->A) { 16829566063dSJacob Faibussowitsch PetscCall(MatConvert(m->A,MATSEQDENSE,MAT_INPLACE_MATRIX,&m->A)); 1683637a0070SStefano Zampini } 1684637a0070SStefano Zampini B->ops->bindtocpu = NULL; 1685637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_CPU; 1686637a0070SStefano Zampini PetscFunctionReturn(0); 1687637a0070SStefano Zampini } 1688637a0070SStefano Zampini 1689637a0070SStefano Zampini PetscErrorCode MatConvert_MPIDense_MPIDenseCUDA(Mat M,MatType type,MatReuse reuse,Mat *newmat) 1690637a0070SStefano Zampini { 1691637a0070SStefano Zampini Mat B; 1692637a0070SStefano Zampini Mat_MPIDense *m; 1693637a0070SStefano Zampini 1694637a0070SStefano Zampini PetscFunctionBegin; 1695637a0070SStefano Zampini if (reuse == MAT_INITIAL_MATRIX) { 16969566063dSJacob Faibussowitsch PetscCall(MatDuplicate(M,MAT_COPY_VALUES,newmat)); 1697637a0070SStefano Zampini } else if (reuse == MAT_REUSE_MATRIX) { 16989566063dSJacob Faibussowitsch PetscCall(MatCopy(M,*newmat,SAME_NONZERO_PATTERN)); 1699637a0070SStefano Zampini } 1700637a0070SStefano Zampini 1701637a0070SStefano Zampini B = *newmat; 17029566063dSJacob Faibussowitsch PetscCall(PetscFree(B->defaultvectype)); 17039566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(VECCUDA,&B->defaultvectype)); 17049566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B,MATMPIDENSECUDA)); 17059566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpidensecuda_mpidense_C", MatConvert_MPIDenseCUDA_MPIDense)); 17069566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaij_mpidensecuda_C", MatProductSetFromOptions_MPIAIJ_MPIDense)); 17079566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaijcusparse_mpidensecuda_C",MatProductSetFromOptions_MPIAIJ_MPIDense)); 17089566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaij_C", MatProductSetFromOptions_MPIDense_MPIAIJ)); 17099566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaijcusparse_C",MatProductSetFromOptions_MPIDense_MPIAIJ)); 17109566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArray_C", MatDenseCUDAGetArray_MPIDenseCUDA)); 17119566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayRead_C", MatDenseCUDAGetArrayRead_MPIDenseCUDA)); 17129566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayWrite_C", MatDenseCUDAGetArrayWrite_MPIDenseCUDA)); 17139566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArray_C", MatDenseCUDARestoreArray_MPIDenseCUDA)); 17149566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayRead_C", MatDenseCUDARestoreArrayRead_MPIDenseCUDA)); 17159566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayWrite_C", MatDenseCUDARestoreArrayWrite_MPIDenseCUDA)); 17169566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAPlaceArray_C", MatDenseCUDAPlaceArray_MPIDenseCUDA)); 17179566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAResetArray_C", MatDenseCUDAResetArray_MPIDenseCUDA)); 17189566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAReplaceArray_C", MatDenseCUDAReplaceArray_MPIDenseCUDA)); 1719f5ff9c66SStefano Zampini m = (Mat_MPIDense*)(B->data); 1720637a0070SStefano Zampini if (m->A) { 17219566063dSJacob Faibussowitsch PetscCall(MatConvert(m->A,MATSEQDENSECUDA,MAT_INPLACE_MATRIX,&m->A)); 1722637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_BOTH; 1723637a0070SStefano Zampini } else { 1724637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_UNALLOCATED; 1725637a0070SStefano Zampini } 17269566063dSJacob Faibussowitsch PetscCall(MatBindToCPU_MPIDenseCUDA(B,PETSC_FALSE)); 1727637a0070SStefano Zampini 1728637a0070SStefano Zampini B->ops->bindtocpu = MatBindToCPU_MPIDenseCUDA; 1729637a0070SStefano Zampini PetscFunctionReturn(0); 1730637a0070SStefano Zampini } 1731637a0070SStefano Zampini #endif 1732637a0070SStefano Zampini 17336947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVec_MPIDense(Mat A,PetscInt col,Vec *v) 17346947451fSStefano Zampini { 17356947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17366947451fSStefano Zampini PetscInt lda; 17376947451fSStefano Zampini 17386947451fSStefano Zampini PetscFunctionBegin; 173928b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 174028b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 17416947451fSStefano Zampini if (!a->cvec) { 17429566063dSJacob Faibussowitsch PetscCall(VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 17436947451fSStefano Zampini } 17446947451fSStefano Zampini a->vecinuse = col + 1; 17459566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 17469566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(a->A,(PetscScalar**)&a->ptrinuse)); 17479566063dSJacob Faibussowitsch PetscCall(VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 17486947451fSStefano Zampini *v = a->cvec; 17496947451fSStefano Zampini PetscFunctionReturn(0); 17506947451fSStefano Zampini } 17516947451fSStefano Zampini 17526947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVec_MPIDense(Mat A,PetscInt col,Vec *v) 17536947451fSStefano Zampini { 17546947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17556947451fSStefano Zampini 17566947451fSStefano Zampini PetscFunctionBegin; 175728b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 175828b400f6SJacob Faibussowitsch PetscCheck(a->cvec,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector"); 17596947451fSStefano Zampini a->vecinuse = 0; 17609566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(a->A,(PetscScalar**)&a->ptrinuse)); 17619566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 17626947451fSStefano Zampini *v = NULL; 17636947451fSStefano Zampini PetscFunctionReturn(0); 17646947451fSStefano Zampini } 17656947451fSStefano Zampini 17666947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecRead_MPIDense(Mat A,PetscInt col,Vec *v) 17676947451fSStefano Zampini { 17686947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17696947451fSStefano Zampini PetscInt lda; 17706947451fSStefano Zampini 17716947451fSStefano Zampini PetscFunctionBegin; 177228b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 177328b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 17746947451fSStefano Zampini if (!a->cvec) { 17759566063dSJacob Faibussowitsch PetscCall(VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 17766947451fSStefano Zampini } 17776947451fSStefano Zampini a->vecinuse = col + 1; 17789566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 17799566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A,&a->ptrinuse)); 17809566063dSJacob Faibussowitsch PetscCall(VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 17819566063dSJacob Faibussowitsch PetscCall(VecLockReadPush(a->cvec)); 17826947451fSStefano Zampini *v = a->cvec; 17836947451fSStefano Zampini PetscFunctionReturn(0); 17846947451fSStefano Zampini } 17856947451fSStefano Zampini 17866947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecRead_MPIDense(Mat A,PetscInt col,Vec *v) 17876947451fSStefano Zampini { 17886947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17896947451fSStefano Zampini 17906947451fSStefano Zampini PetscFunctionBegin; 17915f80ce2aSJacob Faibussowitsch PetscCheck(a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 17925f80ce2aSJacob Faibussowitsch PetscCheck(a->cvec,PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 17936947451fSStefano Zampini a->vecinuse = 0; 17949566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A,&a->ptrinuse)); 17959566063dSJacob Faibussowitsch PetscCall(VecLockReadPop(a->cvec)); 17969566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 17976947451fSStefano Zampini *v = NULL; 17986947451fSStefano Zampini PetscFunctionReturn(0); 17996947451fSStefano Zampini } 18006947451fSStefano Zampini 18016947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecWrite_MPIDense(Mat A,PetscInt col,Vec *v) 18026947451fSStefano Zampini { 18036947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 18046947451fSStefano Zampini PetscInt lda; 18056947451fSStefano Zampini 18066947451fSStefano Zampini PetscFunctionBegin; 18075f80ce2aSJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 18085f80ce2aSJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 18096947451fSStefano Zampini if (!a->cvec) { 18109566063dSJacob Faibussowitsch PetscCall(VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 18116947451fSStefano Zampini } 18126947451fSStefano Zampini a->vecinuse = col + 1; 18139566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 18149566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(a->A,(PetscScalar**)&a->ptrinuse)); 18159566063dSJacob Faibussowitsch PetscCall(VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 18166947451fSStefano Zampini *v = a->cvec; 18176947451fSStefano Zampini PetscFunctionReturn(0); 18186947451fSStefano Zampini } 18196947451fSStefano Zampini 18206947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDense(Mat A,PetscInt col,Vec *v) 18216947451fSStefano Zampini { 18226947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 18236947451fSStefano Zampini 18246947451fSStefano Zampini PetscFunctionBegin; 18255f80ce2aSJacob Faibussowitsch PetscCheck(a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 18265f80ce2aSJacob Faibussowitsch PetscCheck(a->cvec,PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 18276947451fSStefano Zampini a->vecinuse = 0; 18289566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(a->A,(PetscScalar**)&a->ptrinuse)); 18299566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 18306947451fSStefano Zampini *v = NULL; 18316947451fSStefano Zampini PetscFunctionReturn(0); 18326947451fSStefano Zampini } 18336947451fSStefano Zampini 1834a2748737SPierre Jolivet PetscErrorCode MatDenseGetSubMatrix_MPIDense(Mat A,PetscInt rbegin,PetscInt rend,PetscInt cbegin,PetscInt cend,Mat *v) 18355ea7661aSPierre Jolivet { 18365ea7661aSPierre Jolivet Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1837616b8fbbSStefano Zampini Mat_MPIDense *c; 1838616b8fbbSStefano Zampini MPI_Comm comm; 1839a2748737SPierre Jolivet PetscInt pbegin, pend; 18405ea7661aSPierre Jolivet 18415ea7661aSPierre Jolivet PetscFunctionBegin; 18429566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A,&comm)); 18435f80ce2aSJacob Faibussowitsch PetscCheck(!a->vecinuse,comm,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 18445f80ce2aSJacob Faibussowitsch PetscCheck(!a->matinuse,comm,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1845a2748737SPierre Jolivet pbegin = PetscMax(0,PetscMin(A->rmap->rend,rbegin)-A->rmap->rstart); 1846a2748737SPierre Jolivet pend = PetscMin(A->rmap->n,PetscMax(0,rend-A->rmap->rstart)); 18475ea7661aSPierre Jolivet if (!a->cmat) { 18489566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,&a->cmat)); 18499566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)a->cmat)); 18509566063dSJacob Faibussowitsch PetscCall(MatSetType(a->cmat,((PetscObject)A)->type_name)); 1851a2748737SPierre Jolivet if (rend-rbegin==A->rmap->N) PetscCall(PetscLayoutReference(A->rmap,&a->cmat->rmap)); 1852a2748737SPierre Jolivet else { 1853a2748737SPierre Jolivet PetscCall(PetscLayoutSetLocalSize(a->cmat->rmap,pend-pbegin)); 1854a2748737SPierre Jolivet PetscCall(PetscLayoutSetSize(a->cmat->rmap,rend-rbegin)); 1855a2748737SPierre Jolivet PetscCall(PetscLayoutSetUp(a->cmat->rmap)); 1856a2748737SPierre Jolivet } 18579566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(a->cmat->cmap,cend-cbegin)); 18589566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(a->cmat->cmap)); 1859a2748737SPierre Jolivet } else { 1860a2748737SPierre Jolivet PetscBool same = (PetscBool)(rend-rbegin == a->cmat->rmap->N); 1861a2748737SPierre Jolivet if (same && a->cmat->rmap->N != A->rmap->N) { 1862a2748737SPierre Jolivet same = (PetscBool)(pend-pbegin == a->cmat->rmap->n); 1863a2748737SPierre Jolivet PetscCall(MPIU_Allreduce(MPI_IN_PLACE,&same,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A))); 1864a2748737SPierre Jolivet } 1865a2748737SPierre Jolivet if (!same) { 1866a2748737SPierre Jolivet PetscCall(PetscLayoutDestroy(&a->cmat->rmap)); 1867a2748737SPierre Jolivet PetscCall(PetscLayoutCreate(comm,&a->cmat->rmap)); 1868a2748737SPierre Jolivet PetscCall(PetscLayoutSetLocalSize(a->cmat->rmap,pend-pbegin)); 1869a2748737SPierre Jolivet PetscCall(PetscLayoutSetSize(a->cmat->rmap,rend-rbegin)); 1870a2748737SPierre Jolivet PetscCall(PetscLayoutSetUp(a->cmat->rmap)); 1871a2748737SPierre Jolivet } 1872a2748737SPierre Jolivet if (cend-cbegin != a->cmat->cmap->N) { 18739566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&a->cmat->cmap)); 18749566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm,&a->cmat->cmap)); 18759566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(a->cmat->cmap,cend-cbegin)); 18769566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(a->cmat->cmap)); 18775ea7661aSPierre Jolivet } 1878a2748737SPierre Jolivet } 1879616b8fbbSStefano Zampini c = (Mat_MPIDense*)a->cmat->data; 18805f80ce2aSJacob Faibussowitsch PetscCheck(!c->A,comm,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1881a2748737SPierre Jolivet PetscCall(MatDenseGetSubMatrix(a->A,pbegin,pend,cbegin,cend,&c->A)); 1882616b8fbbSStefano Zampini a->cmat->preallocated = PETSC_TRUE; 1883616b8fbbSStefano Zampini a->cmat->assembled = PETSC_TRUE; 18845ea7661aSPierre Jolivet a->matinuse = cbegin + 1; 18855ea7661aSPierre Jolivet *v = a->cmat; 18865ea7661aSPierre Jolivet PetscFunctionReturn(0); 18875ea7661aSPierre Jolivet } 18885ea7661aSPierre Jolivet 18895ea7661aSPierre Jolivet PetscErrorCode MatDenseRestoreSubMatrix_MPIDense(Mat A,Mat *v) 18905ea7661aSPierre Jolivet { 18915ea7661aSPierre Jolivet Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1892616b8fbbSStefano Zampini Mat_MPIDense *c; 18935ea7661aSPierre Jolivet 18945ea7661aSPierre Jolivet PetscFunctionBegin; 18955f80ce2aSJacob Faibussowitsch PetscCheck(a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetSubMatrix() first"); 18965f80ce2aSJacob Faibussowitsch PetscCheck(a->cmat,PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal matrix"); 18975f80ce2aSJacob Faibussowitsch PetscCheck(*v == a->cmat,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Not the matrix obtained from MatDenseGetSubMatrix()"); 18985ea7661aSPierre Jolivet a->matinuse = 0; 1899616b8fbbSStefano Zampini c = (Mat_MPIDense*)a->cmat->data; 19009566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreSubMatrix(a->A,&c->A)); 19015ea7661aSPierre Jolivet *v = NULL; 19025ea7661aSPierre Jolivet PetscFunctionReturn(0); 19035ea7661aSPierre Jolivet } 19045ea7661aSPierre Jolivet 1905002bc6daSRichard Tran Mills /*MC 1906002bc6daSRichard Tran Mills MATMPIDENSE - MATMPIDENSE = "mpidense" - A matrix type to be used for distributed dense matrices. 1907002bc6daSRichard Tran Mills 1908002bc6daSRichard Tran Mills Options Database Keys: 1909002bc6daSRichard Tran Mills . -mat_type mpidense - sets the matrix type to "mpidense" during a call to MatSetFromOptions() 1910002bc6daSRichard Tran Mills 1911002bc6daSRichard Tran Mills Level: beginner 1912002bc6daSRichard Tran Mills 1913db781477SPatrick Sanan .seealso: `MatCreateDense()` 1914002bc6daSRichard Tran Mills 1915002bc6daSRichard Tran Mills M*/ 19168cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIDense(Mat mat) 1917273d9f13SBarry Smith { 1918273d9f13SBarry Smith Mat_MPIDense *a; 1919273d9f13SBarry Smith 1920273d9f13SBarry Smith PetscFunctionBegin; 19219566063dSJacob Faibussowitsch PetscCall(PetscNewLog(mat,&a)); 1922b0a32e0cSBarry Smith mat->data = (void*)a; 19239566063dSJacob Faibussowitsch PetscCall(PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps))); 1924273d9f13SBarry Smith 1925273d9f13SBarry Smith mat->insertmode = NOT_SET_VALUES; 1926273d9f13SBarry Smith 1927273d9f13SBarry Smith /* build cache for off array entries formed */ 1928273d9f13SBarry Smith a->donotstash = PETSC_FALSE; 19292205254eSKarl Rupp 19309566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)mat),1,&mat->stash)); 1931273d9f13SBarry Smith 1932273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 1933f4259b30SLisandro Dalcin a->lvec = NULL; 1934f4259b30SLisandro Dalcin a->Mvctx = NULL; 1935273d9f13SBarry Smith a->roworiented = PETSC_TRUE; 1936273d9f13SBarry Smith 19379566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",MatDenseGetLDA_MPIDense)); 19389566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseSetLDA_C",MatDenseSetLDA_MPIDense)); 19399566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",MatDenseGetArray_MPIDense)); 19409566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",MatDenseRestoreArray_MPIDense)); 19419566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",MatDenseGetArrayRead_MPIDense)); 19429566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",MatDenseRestoreArrayRead_MPIDense)); 19439566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayWrite_C",MatDenseGetArrayWrite_MPIDense)); 19449566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayWrite_C",MatDenseRestoreArrayWrite_MPIDense)); 19459566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",MatDensePlaceArray_MPIDense)); 19469566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",MatDenseResetArray_MPIDense)); 19479566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseReplaceArray_C",MatDenseReplaceArray_MPIDense)); 19489566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDense)); 19499566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDense)); 19509566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDense)); 19519566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDense)); 19529566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDense)); 19539566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDense)); 19549566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetSubMatrix_C",MatDenseGetSubMatrix_MPIDense)); 19559566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreSubMatrix_C",MatDenseRestoreSubMatrix_MPIDense)); 19569566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpiaij_mpidense_C",MatConvert_MPIAIJ_MPIDense)); 19579566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_mpiaij_C",MatConvert_MPIDense_MPIAIJ)); 19588baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 19599566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",MatConvert_MPIDense_Elemental)); 19608baccfbdSHong Zhang #endif 1961d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 19629566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_scalapack_C",MatConvert_Dense_ScaLAPACK)); 1963d24d4204SJose E. Roman #endif 1964637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 19659566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_mpidensecuda_C",MatConvert_MPIDense_MPIDenseCUDA)); 1966637a0070SStefano Zampini #endif 19679566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",MatMPIDenseSetPreallocation_MPIDense)); 19689566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaij_mpidense_C",MatProductSetFromOptions_MPIAIJ_MPIDense)); 19699566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaij_C",MatProductSetFromOptions_MPIDense_MPIAIJ)); 19706718818eSStefano Zampini #if defined(PETSC_HAVE_CUDA) 19719566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaijcusparse_mpidense_C",MatProductSetFromOptions_MPIAIJ_MPIDense)); 19729566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaijcusparse_C",MatProductSetFromOptions_MPIDense_MPIAIJ)); 19736718818eSStefano Zampini #endif 19748949adfdSHong Zhang 19759566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",MatDenseGetColumn_MPIDense)); 19769566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",MatDenseRestoreColumn_MPIDense)); 19779566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)mat,MATMPIDENSE)); 1978273d9f13SBarry Smith PetscFunctionReturn(0); 1979273d9f13SBarry Smith } 1980273d9f13SBarry Smith 1981209238afSKris Buschelman /*MC 1982637a0070SStefano Zampini MATMPIDENSECUDA - MATMPIDENSECUDA = "mpidensecuda" - A matrix type to be used for distributed dense matrices on GPUs. 1983637a0070SStefano Zampini 1984637a0070SStefano Zampini Options Database Keys: 1985637a0070SStefano Zampini . -mat_type mpidensecuda - sets the matrix type to "mpidensecuda" during a call to MatSetFromOptions() 1986637a0070SStefano Zampini 1987637a0070SStefano Zampini Level: beginner 1988637a0070SStefano Zampini 1989637a0070SStefano Zampini .seealso: 1990637a0070SStefano Zampini 1991637a0070SStefano Zampini M*/ 1992637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1993a4af0ceeSJacob Faibussowitsch #include <petsc/private/deviceimpl.h> 1994637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreate_MPIDenseCUDA(Mat B) 1995637a0070SStefano Zampini { 1996637a0070SStefano Zampini PetscFunctionBegin; 19979566063dSJacob Faibussowitsch PetscCall(PetscDeviceInitialize(PETSC_DEVICE_CUDA)); 19989566063dSJacob Faibussowitsch PetscCall(MatCreate_MPIDense(B)); 19999566063dSJacob Faibussowitsch PetscCall(MatConvert_MPIDense_MPIDenseCUDA(B,MATMPIDENSECUDA,MAT_INPLACE_MATRIX,&B)); 2000637a0070SStefano Zampini PetscFunctionReturn(0); 2001637a0070SStefano Zampini } 2002637a0070SStefano Zampini #endif 2003637a0070SStefano Zampini 2004637a0070SStefano Zampini /*MC 2005002d173eSKris Buschelman MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices. 2006209238afSKris Buschelman 2007209238afSKris Buschelman This matrix type is identical to MATSEQDENSE when constructed with a single process communicator, 2008209238afSKris Buschelman and MATMPIDENSE otherwise. 2009209238afSKris Buschelman 2010209238afSKris Buschelman Options Database Keys: 2011209238afSKris Buschelman . -mat_type dense - sets the matrix type to "dense" during a call to MatSetFromOptions() 2012209238afSKris Buschelman 2013209238afSKris Buschelman Level: beginner 2014209238afSKris Buschelman 2015c2e3fba1SPatrick Sanan .seealso: `MATSEQDENSE`, `MATMPIDENSE`, `MATDENSECUDA` 20166947451fSStefano Zampini M*/ 20176947451fSStefano Zampini 20186947451fSStefano Zampini /*MC 20196947451fSStefano Zampini MATDENSECUDA - MATDENSECUDA = "densecuda" - A matrix type to be used for dense matrices on GPUs. 20206947451fSStefano Zampini 20216947451fSStefano Zampini This matrix type is identical to MATSEQDENSECUDA when constructed with a single process communicator, 20226947451fSStefano Zampini and MATMPIDENSECUDA otherwise. 20236947451fSStefano Zampini 20246947451fSStefano Zampini Options Database Keys: 20256947451fSStefano Zampini . -mat_type densecuda - sets the matrix type to "densecuda" during a call to MatSetFromOptions() 20266947451fSStefano Zampini 20276947451fSStefano Zampini Level: beginner 20286947451fSStefano Zampini 2029c2e3fba1SPatrick Sanan .seealso: `MATSEQDENSECUDA`, `MATMPIDENSECUDA`, `MATDENSE` 2030209238afSKris Buschelman M*/ 2031209238afSKris Buschelman 2032273d9f13SBarry Smith /*@C 2033273d9f13SBarry Smith MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries 2034273d9f13SBarry Smith 20358f490ea3SStefano Zampini Collective 2036273d9f13SBarry Smith 2037273d9f13SBarry Smith Input Parameters: 20381c4f3114SJed Brown . B - the matrix 20390298fd71SBarry Smith - data - optional location of matrix data. Set data=NULL for PETSc 2040273d9f13SBarry Smith to control all matrix memory allocation. 2041273d9f13SBarry Smith 2042273d9f13SBarry Smith Notes: 2043273d9f13SBarry Smith The dense format is fully compatible with standard Fortran 77 2044273d9f13SBarry Smith storage by columns. 2045273d9f13SBarry Smith 2046273d9f13SBarry Smith The data input variable is intended primarily for Fortran programmers 2047273d9f13SBarry Smith who wish to allocate their own matrix memory space. Most users should 20480298fd71SBarry Smith set data=NULL. 2049273d9f13SBarry Smith 2050273d9f13SBarry Smith Level: intermediate 2051273d9f13SBarry Smith 2052db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqDense()`, `MatSetValues()` 2053273d9f13SBarry Smith @*/ 20541c4f3114SJed Brown PetscErrorCode MatMPIDenseSetPreallocation(Mat B,PetscScalar *data) 2055273d9f13SBarry Smith { 2056273d9f13SBarry Smith PetscFunctionBegin; 2057d5ea218eSStefano Zampini PetscValidHeaderSpecific(B,MAT_CLASSID,1); 2058cac4c232SBarry Smith PetscTryMethod(B,"MatMPIDenseSetPreallocation_C",(Mat,PetscScalar*),(B,data)); 2059273d9f13SBarry Smith PetscFunctionReturn(0); 2060273d9f13SBarry Smith } 2061273d9f13SBarry Smith 2062d3042a70SBarry Smith /*@ 2063637a0070SStefano Zampini MatDensePlaceArray - Allows one to replace the array in a dense matrix with an 2064d3042a70SBarry Smith array provided by the user. This is useful to avoid copying an array 2065d3042a70SBarry Smith into a matrix 2066d3042a70SBarry Smith 2067d3042a70SBarry Smith Not Collective 2068d3042a70SBarry Smith 2069d3042a70SBarry Smith Input Parameters: 2070d3042a70SBarry Smith + mat - the matrix 2071d3042a70SBarry Smith - array - the array in column major order 2072d3042a70SBarry Smith 2073d3042a70SBarry Smith Notes: 2074d3042a70SBarry Smith You can return to the original array with a call to MatDenseResetArray(). The user is responsible for freeing this array; it will not be 2075d3042a70SBarry Smith freed when the matrix is destroyed. 2076d3042a70SBarry Smith 2077d3042a70SBarry Smith Level: developer 2078d3042a70SBarry Smith 2079db781477SPatrick Sanan .seealso: `MatDenseGetArray()`, `MatDenseResetArray()`, `VecPlaceArray()`, `VecGetArray()`, `VecRestoreArray()`, `VecReplaceArray()`, `VecResetArray()` 2080d3042a70SBarry Smith 2081d3042a70SBarry Smith @*/ 2082637a0070SStefano Zampini PetscErrorCode MatDensePlaceArray(Mat mat,const PetscScalar *array) 2083d3042a70SBarry Smith { 2084d3042a70SBarry Smith PetscFunctionBegin; 2085d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2086cac4c232SBarry Smith PetscUseMethod(mat,"MatDensePlaceArray_C",(Mat,const PetscScalar*),(mat,array)); 20879566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2088637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 2089637a0070SStefano Zampini mat->offloadmask = PETSC_OFFLOAD_CPU; 2090637a0070SStefano Zampini #endif 2091d3042a70SBarry Smith PetscFunctionReturn(0); 2092d3042a70SBarry Smith } 2093d3042a70SBarry Smith 2094d3042a70SBarry Smith /*@ 2095d3042a70SBarry Smith MatDenseResetArray - Resets the matrix array to that it previously had before the call to MatDensePlaceArray() 2096d3042a70SBarry Smith 2097d3042a70SBarry Smith Not Collective 2098d3042a70SBarry Smith 2099d3042a70SBarry Smith Input Parameters: 2100d3042a70SBarry Smith . mat - the matrix 2101d3042a70SBarry Smith 2102d3042a70SBarry Smith Notes: 2103d3042a70SBarry Smith You can only call this after a call to MatDensePlaceArray() 2104d3042a70SBarry Smith 2105d3042a70SBarry Smith Level: developer 2106d3042a70SBarry Smith 2107db781477SPatrick Sanan .seealso: `MatDenseGetArray()`, `MatDensePlaceArray()`, `VecPlaceArray()`, `VecGetArray()`, `VecRestoreArray()`, `VecReplaceArray()`, `VecResetArray()` 2108d3042a70SBarry Smith 2109d3042a70SBarry Smith @*/ 2110d3042a70SBarry Smith PetscErrorCode MatDenseResetArray(Mat mat) 2111d3042a70SBarry Smith { 2112d3042a70SBarry Smith PetscFunctionBegin; 2113d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2114cac4c232SBarry Smith PetscUseMethod(mat,"MatDenseResetArray_C",(Mat),(mat)); 21159566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2116d3042a70SBarry Smith PetscFunctionReturn(0); 2117d3042a70SBarry Smith } 2118d3042a70SBarry Smith 2119d5ea218eSStefano Zampini /*@ 2120d5ea218eSStefano Zampini MatDenseReplaceArray - Allows one to replace the array in a dense matrix with an 2121d5ea218eSStefano Zampini array provided by the user. This is useful to avoid copying an array 2122d5ea218eSStefano Zampini into a matrix 2123d5ea218eSStefano Zampini 2124d5ea218eSStefano Zampini Not Collective 2125d5ea218eSStefano Zampini 2126d5ea218eSStefano Zampini Input Parameters: 2127d5ea218eSStefano Zampini + mat - the matrix 2128d5ea218eSStefano Zampini - array - the array in column major order 2129d5ea218eSStefano Zampini 2130d5ea218eSStefano Zampini Notes: 2131d5ea218eSStefano Zampini The memory passed in MUST be obtained with PetscMalloc() and CANNOT be 2132d5ea218eSStefano Zampini freed by the user. It will be freed when the matrix is destroyed. 2133d5ea218eSStefano Zampini 2134d5ea218eSStefano Zampini Level: developer 2135d5ea218eSStefano Zampini 2136db781477SPatrick Sanan .seealso: `MatDenseGetArray()`, `VecReplaceArray()` 2137d5ea218eSStefano Zampini @*/ 2138d5ea218eSStefano Zampini PetscErrorCode MatDenseReplaceArray(Mat mat,const PetscScalar *array) 2139d5ea218eSStefano Zampini { 2140d5ea218eSStefano Zampini PetscFunctionBegin; 2141d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2142cac4c232SBarry Smith PetscUseMethod(mat,"MatDenseReplaceArray_C",(Mat,const PetscScalar*),(mat,array)); 21439566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2144d5ea218eSStefano Zampini #if defined(PETSC_HAVE_CUDA) 2145d5ea218eSStefano Zampini mat->offloadmask = PETSC_OFFLOAD_CPU; 2146d5ea218eSStefano Zampini #endif 2147d5ea218eSStefano Zampini PetscFunctionReturn(0); 2148d5ea218eSStefano Zampini } 2149d5ea218eSStefano Zampini 2150637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 21518965ea79SLois Curfman McInnes /*@C 2152637a0070SStefano Zampini MatDenseCUDAPlaceArray - Allows one to replace the GPU array in a dense matrix with an 2153637a0070SStefano Zampini array provided by the user. This is useful to avoid copying an array 2154637a0070SStefano Zampini into a matrix 2155637a0070SStefano Zampini 2156637a0070SStefano Zampini Not Collective 2157637a0070SStefano Zampini 2158637a0070SStefano Zampini Input Parameters: 2159637a0070SStefano Zampini + mat - the matrix 2160637a0070SStefano Zampini - array - the array in column major order 2161637a0070SStefano Zampini 2162637a0070SStefano Zampini Notes: 2163637a0070SStefano Zampini You can return to the original array with a call to MatDenseCUDAResetArray(). The user is responsible for freeing this array; it will not be 2164637a0070SStefano Zampini freed when the matrix is destroyed. The array must have been allocated with cudaMalloc(). 2165637a0070SStefano Zampini 2166637a0070SStefano Zampini Level: developer 2167637a0070SStefano Zampini 2168db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDAResetArray()` 2169637a0070SStefano Zampini @*/ 2170637a0070SStefano Zampini PetscErrorCode MatDenseCUDAPlaceArray(Mat mat,const PetscScalar *array) 2171637a0070SStefano Zampini { 2172637a0070SStefano Zampini PetscFunctionBegin; 2173d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2174cac4c232SBarry Smith PetscUseMethod(mat,"MatDenseCUDAPlaceArray_C",(Mat,const PetscScalar*),(mat,array)); 21759566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2176637a0070SStefano Zampini mat->offloadmask = PETSC_OFFLOAD_GPU; 2177637a0070SStefano Zampini PetscFunctionReturn(0); 2178637a0070SStefano Zampini } 2179637a0070SStefano Zampini 2180637a0070SStefano Zampini /*@C 2181637a0070SStefano Zampini MatDenseCUDAResetArray - Resets the matrix array to that it previously had before the call to MatDenseCUDAPlaceArray() 2182637a0070SStefano Zampini 2183637a0070SStefano Zampini Not Collective 2184637a0070SStefano Zampini 2185637a0070SStefano Zampini Input Parameters: 2186637a0070SStefano Zampini . mat - the matrix 2187637a0070SStefano Zampini 2188637a0070SStefano Zampini Notes: 2189637a0070SStefano Zampini You can only call this after a call to MatDenseCUDAPlaceArray() 2190637a0070SStefano Zampini 2191637a0070SStefano Zampini Level: developer 2192637a0070SStefano Zampini 2193db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDAPlaceArray()` 2194637a0070SStefano Zampini 2195637a0070SStefano Zampini @*/ 2196637a0070SStefano Zampini PetscErrorCode MatDenseCUDAResetArray(Mat mat) 2197637a0070SStefano Zampini { 2198637a0070SStefano Zampini PetscFunctionBegin; 2199d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2200cac4c232SBarry Smith PetscUseMethod(mat,"MatDenseCUDAResetArray_C",(Mat),(mat)); 22019566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2202637a0070SStefano Zampini PetscFunctionReturn(0); 2203637a0070SStefano Zampini } 2204637a0070SStefano Zampini 2205637a0070SStefano Zampini /*@C 2206d5ea218eSStefano Zampini MatDenseCUDAReplaceArray - Allows one to replace the GPU array in a dense matrix with an 2207d5ea218eSStefano Zampini array provided by the user. This is useful to avoid copying an array 2208d5ea218eSStefano Zampini into a matrix 2209d5ea218eSStefano Zampini 2210d5ea218eSStefano Zampini Not Collective 2211d5ea218eSStefano Zampini 2212d5ea218eSStefano Zampini Input Parameters: 2213d5ea218eSStefano Zampini + mat - the matrix 2214d5ea218eSStefano Zampini - array - the array in column major order 2215d5ea218eSStefano Zampini 2216d5ea218eSStefano Zampini Notes: 2217d5ea218eSStefano Zampini This permanently replaces the GPU array and frees the memory associated with the old GPU array. 2218d5ea218eSStefano Zampini The memory passed in CANNOT be freed by the user. It will be freed 2219d5ea218eSStefano Zampini when the matrix is destroyed. The array should respect the matrix leading dimension. 2220d5ea218eSStefano Zampini 2221d5ea218eSStefano Zampini Level: developer 2222d5ea218eSStefano Zampini 2223db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDAPlaceArray()`, `MatDenseCUDAResetArray()` 2224d5ea218eSStefano Zampini @*/ 2225d5ea218eSStefano Zampini PetscErrorCode MatDenseCUDAReplaceArray(Mat mat,const PetscScalar *array) 2226d5ea218eSStefano Zampini { 2227d5ea218eSStefano Zampini PetscFunctionBegin; 2228d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2229cac4c232SBarry Smith PetscUseMethod(mat,"MatDenseCUDAReplaceArray_C",(Mat,const PetscScalar*),(mat,array)); 22309566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2231d5ea218eSStefano Zampini mat->offloadmask = PETSC_OFFLOAD_GPU; 2232d5ea218eSStefano Zampini PetscFunctionReturn(0); 2233d5ea218eSStefano Zampini } 2234d5ea218eSStefano Zampini 2235d5ea218eSStefano Zampini /*@C 2236637a0070SStefano Zampini MatDenseCUDAGetArrayWrite - Provides write access to the CUDA buffer inside a dense matrix. 2237637a0070SStefano Zampini 2238637a0070SStefano Zampini Not Collective 2239637a0070SStefano Zampini 2240637a0070SStefano Zampini Input Parameters: 2241637a0070SStefano Zampini . A - the matrix 2242637a0070SStefano Zampini 2243637a0070SStefano Zampini Output Parameters 2244637a0070SStefano Zampini . array - the GPU array in column major order 2245637a0070SStefano Zampini 2246637a0070SStefano Zampini Notes: 2247637a0070SStefano Zampini The data on the GPU may not be updated due to operations done on the CPU. If you need updated data, use MatDenseCUDAGetArray(). The array must be restored with MatDenseCUDARestoreArrayWrite() when no longer needed. 2248637a0070SStefano Zampini 2249637a0070SStefano Zampini Level: developer 2250637a0070SStefano Zampini 2251db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDARestoreArray()`, `MatDenseCUDARestoreArrayWrite()`, `MatDenseCUDAGetArrayRead()`, `MatDenseCUDARestoreArrayRead()` 2252637a0070SStefano Zampini @*/ 2253637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArrayWrite(Mat A, PetscScalar **a) 2254637a0070SStefano Zampini { 2255637a0070SStefano Zampini PetscFunctionBegin; 2256d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2257cac4c232SBarry Smith PetscUseMethod(A,"MatDenseCUDAGetArrayWrite_C",(Mat,PetscScalar**),(A,a)); 22589566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)A)); 2259637a0070SStefano Zampini PetscFunctionReturn(0); 2260637a0070SStefano Zampini } 2261637a0070SStefano Zampini 2262637a0070SStefano Zampini /*@C 2263637a0070SStefano Zampini MatDenseCUDARestoreArrayWrite - Restore write access to the CUDA buffer inside a dense matrix previously obtained with MatDenseCUDAGetArrayWrite(). 2264637a0070SStefano Zampini 2265637a0070SStefano Zampini Not Collective 2266637a0070SStefano Zampini 2267637a0070SStefano Zampini Input Parameters: 2268637a0070SStefano Zampini + A - the matrix 2269637a0070SStefano Zampini - array - the GPU array in column major order 2270637a0070SStefano Zampini 2271637a0070SStefano Zampini Notes: 2272637a0070SStefano Zampini 2273637a0070SStefano Zampini Level: developer 2274637a0070SStefano Zampini 2275db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDARestoreArray()`, `MatDenseCUDAGetArrayWrite()`, `MatDenseCUDARestoreArrayRead()`, `MatDenseCUDAGetArrayRead()` 2276637a0070SStefano Zampini @*/ 2277637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArrayWrite(Mat A, PetscScalar **a) 2278637a0070SStefano Zampini { 2279637a0070SStefano Zampini PetscFunctionBegin; 2280d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2281cac4c232SBarry Smith PetscUseMethod(A,"MatDenseCUDARestoreArrayWrite_C",(Mat,PetscScalar**),(A,a)); 22829566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)A)); 2283637a0070SStefano Zampini A->offloadmask = PETSC_OFFLOAD_GPU; 2284637a0070SStefano Zampini PetscFunctionReturn(0); 2285637a0070SStefano Zampini } 2286637a0070SStefano Zampini 2287637a0070SStefano Zampini /*@C 2288637a0070SStefano Zampini MatDenseCUDAGetArrayRead - Provides read-only access to the CUDA buffer inside a dense matrix. The array must be restored with MatDenseCUDARestoreArrayRead() when no longer needed. 2289637a0070SStefano Zampini 2290637a0070SStefano Zampini Not Collective 2291637a0070SStefano Zampini 2292637a0070SStefano Zampini Input Parameters: 2293637a0070SStefano Zampini . A - the matrix 2294637a0070SStefano Zampini 2295637a0070SStefano Zampini Output Parameters 2296637a0070SStefano Zampini . array - the GPU array in column major order 2297637a0070SStefano Zampini 2298637a0070SStefano Zampini Notes: 2299637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). 2300637a0070SStefano Zampini 2301637a0070SStefano Zampini Level: developer 2302637a0070SStefano Zampini 2303db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDARestoreArray()`, `MatDenseCUDARestoreArrayWrite()`, `MatDenseCUDAGetArrayWrite()`, `MatDenseCUDARestoreArrayRead()` 2304637a0070SStefano Zampini @*/ 2305637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArrayRead(Mat A, const PetscScalar **a) 2306637a0070SStefano Zampini { 2307637a0070SStefano Zampini PetscFunctionBegin; 2308d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2309cac4c232SBarry Smith PetscUseMethod(A,"MatDenseCUDAGetArrayRead_C",(Mat,const PetscScalar**),(A,a)); 2310637a0070SStefano Zampini PetscFunctionReturn(0); 2311637a0070SStefano Zampini } 2312637a0070SStefano Zampini 2313637a0070SStefano Zampini /*@C 2314637a0070SStefano Zampini MatDenseCUDARestoreArrayRead - Restore read-only access to the CUDA buffer inside a dense matrix previously obtained with a call to MatDenseCUDAGetArrayRead(). 2315637a0070SStefano Zampini 2316637a0070SStefano Zampini Not Collective 2317637a0070SStefano Zampini 2318637a0070SStefano Zampini Input Parameters: 2319637a0070SStefano Zampini + A - the matrix 2320637a0070SStefano Zampini - array - the GPU array in column major order 2321637a0070SStefano Zampini 2322637a0070SStefano Zampini Notes: 2323637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). 2324637a0070SStefano Zampini 2325637a0070SStefano Zampini Level: developer 2326637a0070SStefano Zampini 2327db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDARestoreArray()`, `MatDenseCUDARestoreArrayWrite()`, `MatDenseCUDAGetArrayWrite()`, `MatDenseCUDAGetArrayRead()` 2328637a0070SStefano Zampini @*/ 2329637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArrayRead(Mat A, const PetscScalar **a) 2330637a0070SStefano Zampini { 2331637a0070SStefano Zampini PetscFunctionBegin; 2332cac4c232SBarry Smith PetscUseMethod(A,"MatDenseCUDARestoreArrayRead_C",(Mat,const PetscScalar**),(A,a)); 2333637a0070SStefano Zampini PetscFunctionReturn(0); 2334637a0070SStefano Zampini } 2335637a0070SStefano Zampini 2336637a0070SStefano Zampini /*@C 2337637a0070SStefano Zampini MatDenseCUDAGetArray - Provides access to the CUDA buffer inside a dense matrix. The array must be restored with MatDenseCUDARestoreArray() when no longer needed. 2338637a0070SStefano Zampini 2339637a0070SStefano Zampini Not Collective 2340637a0070SStefano Zampini 2341637a0070SStefano Zampini Input Parameters: 2342637a0070SStefano Zampini . A - the matrix 2343637a0070SStefano Zampini 2344637a0070SStefano Zampini Output Parameters 2345637a0070SStefano Zampini . array - the GPU array in column major order 2346637a0070SStefano Zampini 2347637a0070SStefano Zampini Notes: 2348637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). For read-only access, use MatDenseCUDAGetArrayRead(). 2349637a0070SStefano Zampini 2350637a0070SStefano Zampini Level: developer 2351637a0070SStefano Zampini 2352db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArrayRead()`, `MatDenseCUDARestoreArray()`, `MatDenseCUDARestoreArrayWrite()`, `MatDenseCUDAGetArrayWrite()`, `MatDenseCUDARestoreArrayRead()` 2353637a0070SStefano Zampini @*/ 2354637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArray(Mat A, PetscScalar **a) 2355637a0070SStefano Zampini { 2356637a0070SStefano Zampini PetscFunctionBegin; 2357d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2358cac4c232SBarry Smith PetscUseMethod(A,"MatDenseCUDAGetArray_C",(Mat,PetscScalar**),(A,a)); 23599566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)A)); 2360637a0070SStefano Zampini PetscFunctionReturn(0); 2361637a0070SStefano Zampini } 2362637a0070SStefano Zampini 2363637a0070SStefano Zampini /*@C 2364637a0070SStefano Zampini MatDenseCUDARestoreArray - Restore access to the CUDA buffer inside a dense matrix previously obtained with MatDenseCUDAGetArray(). 2365637a0070SStefano Zampini 2366637a0070SStefano Zampini Not Collective 2367637a0070SStefano Zampini 2368637a0070SStefano Zampini Input Parameters: 2369637a0070SStefano Zampini + A - the matrix 2370637a0070SStefano Zampini - array - the GPU array in column major order 2371637a0070SStefano Zampini 2372637a0070SStefano Zampini Notes: 2373637a0070SStefano Zampini 2374637a0070SStefano Zampini Level: developer 2375637a0070SStefano Zampini 2376db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDARestoreArrayWrite()`, `MatDenseCUDAGetArrayWrite()`, `MatDenseCUDARestoreArrayRead()`, `MatDenseCUDAGetArrayRead()` 2377637a0070SStefano Zampini @*/ 2378637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArray(Mat A, PetscScalar **a) 2379637a0070SStefano Zampini { 2380637a0070SStefano Zampini PetscFunctionBegin; 2381d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2382cac4c232SBarry Smith PetscUseMethod(A,"MatDenseCUDARestoreArray_C",(Mat,PetscScalar**),(A,a)); 23839566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)A)); 2384637a0070SStefano Zampini A->offloadmask = PETSC_OFFLOAD_GPU; 2385637a0070SStefano Zampini PetscFunctionReturn(0); 2386637a0070SStefano Zampini } 2387637a0070SStefano Zampini #endif 2388637a0070SStefano Zampini 2389637a0070SStefano Zampini /*@C 2390637a0070SStefano Zampini MatCreateDense - Creates a matrix in dense format. 23918965ea79SLois Curfman McInnes 2392d083f849SBarry Smith Collective 2393db81eaa0SLois Curfman McInnes 23948965ea79SLois Curfman McInnes Input Parameters: 2395db81eaa0SLois Curfman McInnes + comm - MPI communicator 23968965ea79SLois Curfman McInnes . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2397db81eaa0SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 23988965ea79SLois Curfman McInnes . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 2399db81eaa0SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 24006cfe35ddSJose E. Roman - data - optional location of matrix data. Set data=NULL (PETSC_NULL_SCALAR for Fortran users) for PETSc 2401dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 24028965ea79SLois Curfman McInnes 24038965ea79SLois Curfman McInnes Output Parameter: 2404477f1c0bSLois Curfman McInnes . A - the matrix 24058965ea79SLois Curfman McInnes 2406b259b22eSLois Curfman McInnes Notes: 240739ddd567SLois Curfman McInnes The dense format is fully compatible with standard Fortran 77 240839ddd567SLois Curfman McInnes storage by columns. 2409002bc6daSRichard Tran Mills Note that, although local portions of the matrix are stored in column-major 2410002bc6daSRichard Tran Mills order, the matrix is partitioned across MPI ranks by row. 24118965ea79SLois Curfman McInnes 241218f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 241318f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 24146cfe35ddSJose E. Roman set data=NULL (PETSC_NULL_SCALAR for Fortran users). 241518f449edSLois Curfman McInnes 24168965ea79SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 24178965ea79SLois Curfman McInnes (possibly both). 24188965ea79SLois Curfman McInnes 2419027ccd11SLois Curfman McInnes Level: intermediate 2420027ccd11SLois Curfman McInnes 2421db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqDense()`, `MatSetValues()` 24228965ea79SLois Curfman McInnes @*/ 242369b1f4b7SBarry Smith PetscErrorCode MatCreateDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 24248965ea79SLois Curfman McInnes { 24253a40ed3dSBarry Smith PetscFunctionBegin; 24269566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,A)); 24279566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A,m,n,M,N)); 24286f08ad05SPierre Jolivet PetscCall(MatSetType(*A,MATDENSE)); 24299566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(*A,data)); 24306f08ad05SPierre Jolivet PetscCall(MatMPIDenseSetPreallocation(*A,data)); 24313a40ed3dSBarry Smith PetscFunctionReturn(0); 24328965ea79SLois Curfman McInnes } 24338965ea79SLois Curfman McInnes 2434637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 2435637a0070SStefano Zampini /*@C 2436637a0070SStefano Zampini MatCreateDenseCUDA - Creates a matrix in dense format using CUDA. 2437637a0070SStefano Zampini 2438637a0070SStefano Zampini Collective 2439637a0070SStefano Zampini 2440637a0070SStefano Zampini Input Parameters: 2441637a0070SStefano Zampini + comm - MPI communicator 2442637a0070SStefano Zampini . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2443637a0070SStefano Zampini . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 2444637a0070SStefano Zampini . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 2445637a0070SStefano Zampini . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 2446637a0070SStefano Zampini - data - optional location of GPU matrix data. Set data=NULL for PETSc 2447637a0070SStefano Zampini to control matrix memory allocation. 2448637a0070SStefano Zampini 2449637a0070SStefano Zampini Output Parameter: 2450637a0070SStefano Zampini . A - the matrix 2451637a0070SStefano Zampini 2452637a0070SStefano Zampini Notes: 2453637a0070SStefano Zampini 2454637a0070SStefano Zampini Level: intermediate 2455637a0070SStefano Zampini 2456db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateDense()` 2457637a0070SStefano Zampini @*/ 2458637a0070SStefano Zampini PetscErrorCode MatCreateDenseCUDA(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 2459637a0070SStefano Zampini { 2460637a0070SStefano Zampini PetscFunctionBegin; 24619566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,A)); 2462637a0070SStefano Zampini PetscValidLogicalCollectiveBool(*A,!!data,6); 24639566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A,m,n,M,N)); 24646f08ad05SPierre Jolivet PetscCall(MatSetType(*A,MATDENSECUDA)); 24659566063dSJacob Faibussowitsch PetscCall(MatSeqDenseCUDASetPreallocation(*A,data)); 24666f08ad05SPierre Jolivet PetscCall(MatMPIDenseCUDASetPreallocation(*A,data)); 2467637a0070SStefano Zampini PetscFunctionReturn(0); 2468637a0070SStefano Zampini } 2469637a0070SStefano Zampini #endif 2470637a0070SStefano Zampini 24716849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat) 24728965ea79SLois Curfman McInnes { 24738965ea79SLois Curfman McInnes Mat mat; 24743501a2bdSLois Curfman McInnes Mat_MPIDense *a,*oldmat = (Mat_MPIDense*)A->data; 24758965ea79SLois Curfman McInnes 24763a40ed3dSBarry Smith PetscFunctionBegin; 2477f4259b30SLisandro Dalcin *newmat = NULL; 24789566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&mat)); 24799566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N)); 24809566063dSJacob Faibussowitsch PetscCall(MatSetType(mat,((PetscObject)A)->type_name)); 2481834f8fabSBarry Smith a = (Mat_MPIDense*)mat->data; 24825aa7edbeSHong Zhang 2483d5f3da31SBarry Smith mat->factortype = A->factortype; 2484c456f294SBarry Smith mat->assembled = PETSC_TRUE; 2485273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 24868965ea79SLois Curfman McInnes 2487e0fa3b82SLois Curfman McInnes mat->insertmode = NOT_SET_VALUES; 24883782ba37SSatish Balay a->donotstash = oldmat->donotstash; 2489e04c1aa4SHong Zhang 24909566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->rmap,&mat->rmap)); 24919566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->cmap,&mat->cmap)); 24928965ea79SLois Curfman McInnes 24939566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A,cpvalues,&a->A)); 24949566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A)); 249501b82886SBarry Smith 24968965ea79SLois Curfman McInnes *newmat = mat; 24973a40ed3dSBarry Smith PetscFunctionReturn(0); 24988965ea79SLois Curfman McInnes } 24998965ea79SLois Curfman McInnes 2500eb91f321SVaclav Hapla PetscErrorCode MatLoad_MPIDense(Mat newMat, PetscViewer viewer) 2501eb91f321SVaclav Hapla { 250287d5ce66SSatish Balay PetscBool isbinary; 250387d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 250487d5ce66SSatish Balay PetscBool ishdf5; 250587d5ce66SSatish Balay #endif 2506eb91f321SVaclav Hapla 2507eb91f321SVaclav Hapla PetscFunctionBegin; 2508eb91f321SVaclav Hapla PetscValidHeaderSpecific(newMat,MAT_CLASSID,1); 2509eb91f321SVaclav Hapla PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2); 2510eb91f321SVaclav Hapla /* force binary viewer to load .info file if it has not yet done so */ 25119566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 25129566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary)); 251387d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 25149566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERHDF5, &ishdf5)); 251587d5ce66SSatish Balay #endif 2516eb91f321SVaclav Hapla if (isbinary) { 25179566063dSJacob Faibussowitsch PetscCall(MatLoad_Dense_Binary(newMat,viewer)); 2518eb91f321SVaclav Hapla #if defined(PETSC_HAVE_HDF5) 251987d5ce66SSatish Balay } else if (ishdf5) { 25209566063dSJacob Faibussowitsch PetscCall(MatLoad_Dense_HDF5(newMat,viewer)); 2521eb91f321SVaclav Hapla #endif 252298921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)newMat),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)newMat)->type_name); 2523eb91f321SVaclav Hapla PetscFunctionReturn(0); 2524eb91f321SVaclav Hapla } 2525eb91f321SVaclav Hapla 25266718818eSStefano Zampini static PetscErrorCode MatEqual_MPIDense(Mat A,Mat B,PetscBool *flag) 25276e4ee0c6SHong Zhang { 25286e4ee0c6SHong Zhang Mat_MPIDense *matB = (Mat_MPIDense*)B->data,*matA = (Mat_MPIDense*)A->data; 25296e4ee0c6SHong Zhang Mat a,b; 253090ace30eSBarry Smith 25316e4ee0c6SHong Zhang PetscFunctionBegin; 25326e4ee0c6SHong Zhang a = matA->A; 25336e4ee0c6SHong Zhang b = matB->A; 25342cf15c64SPierre Jolivet PetscCall(MatEqual(a,b,flag)); 25352cf15c64SPierre Jolivet PetscCall(MPIU_Allreduce(MPI_IN_PLACE,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A))); 25366e4ee0c6SHong Zhang PetscFunctionReturn(0); 25376e4ee0c6SHong Zhang } 253890ace30eSBarry Smith 25396718818eSStefano Zampini PetscErrorCode MatDestroy_MatTransMatMult_MPIDense_MPIDense(void *data) 2540baa3c1c6SHong Zhang { 25416718818eSStefano Zampini Mat_TransMatMultDense *atb = (Mat_TransMatMultDense *)data; 2542baa3c1c6SHong Zhang 2543baa3c1c6SHong Zhang PetscFunctionBegin; 25449566063dSJacob Faibussowitsch PetscCall(PetscFree2(atb->sendbuf,atb->recvcounts)); 25459566063dSJacob Faibussowitsch PetscCall(MatDestroy(&atb->atb)); 25469566063dSJacob Faibussowitsch PetscCall(PetscFree(atb)); 2547baa3c1c6SHong Zhang PetscFunctionReturn(0); 2548baa3c1c6SHong Zhang } 2549baa3c1c6SHong Zhang 25506718818eSStefano Zampini PetscErrorCode MatDestroy_MatMatTransMult_MPIDense_MPIDense(void *data) 2551cc48ffa7SToby Isaac { 25526718818eSStefano Zampini Mat_MatTransMultDense *abt = (Mat_MatTransMultDense *)data; 2553cc48ffa7SToby Isaac 2554cc48ffa7SToby Isaac PetscFunctionBegin; 25559566063dSJacob Faibussowitsch PetscCall(PetscFree2(abt->buf[0],abt->buf[1])); 25569566063dSJacob Faibussowitsch PetscCall(PetscFree2(abt->recvcounts,abt->recvdispls)); 25579566063dSJacob Faibussowitsch PetscCall(PetscFree(abt)); 2558cc48ffa7SToby Isaac PetscFunctionReturn(0); 2559cc48ffa7SToby Isaac } 2560cc48ffa7SToby Isaac 25616718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 2562cb20be35SHong Zhang { 2563baa3c1c6SHong Zhang Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 25646718818eSStefano Zampini Mat_TransMatMultDense *atb; 2565cb20be35SHong Zhang MPI_Comm comm; 25666718818eSStefano Zampini PetscMPIInt size,*recvcounts; 25676718818eSStefano Zampini PetscScalar *carray,*sendbuf; 2568637a0070SStefano Zampini const PetscScalar *atbarray; 2569a1f9a5e6SStefano Zampini PetscInt i,cN=C->cmap->N,proc,k,j,lda; 2570e68c0b26SHong Zhang const PetscInt *ranges; 2571cb20be35SHong Zhang 2572cb20be35SHong Zhang PetscFunctionBegin; 25736718818eSStefano Zampini MatCheckProduct(C,3); 25745f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 25756718818eSStefano Zampini atb = (Mat_TransMatMultDense *)C->product->data; 25766718818eSStefano Zampini recvcounts = atb->recvcounts; 25776718818eSStefano Zampini sendbuf = atb->sendbuf; 25786718818eSStefano Zampini 25799566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A,&comm)); 25809566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 2581e68c0b26SHong Zhang 2582c5ef1628SHong Zhang /* compute atbarray = aseq^T * bseq */ 25839566063dSJacob Faibussowitsch PetscCall(MatTransposeMatMult(a->A,b->A,atb->atb ? MAT_REUSE_MATRIX : MAT_INITIAL_MATRIX,PETSC_DEFAULT,&atb->atb)); 2584cb20be35SHong Zhang 25859566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRanges(C,&ranges)); 2586cb20be35SHong Zhang 2587660d5466SHong Zhang /* arrange atbarray into sendbuf */ 25889566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(atb->atb,&atbarray)); 25899566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(atb->atb,&lda)); 2590637a0070SStefano Zampini for (proc=0, k=0; proc<size; proc++) { 2591baa3c1c6SHong Zhang for (j=0; j<cN; j++) { 2592a1f9a5e6SStefano Zampini for (i=ranges[proc]; i<ranges[proc+1]; i++) sendbuf[k++] = atbarray[i+j*lda]; 2593cb20be35SHong Zhang } 2594cb20be35SHong Zhang } 25959566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(atb->atb,&atbarray)); 2596637a0070SStefano Zampini 2597c5ef1628SHong Zhang /* sum all atbarray to local values of C */ 25989566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(c->A,&carray)); 25999566063dSJacob Faibussowitsch PetscCallMPI(MPI_Reduce_scatter(sendbuf,carray,recvcounts,MPIU_SCALAR,MPIU_SUM,comm)); 26009566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(c->A,&carray)); 26019566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY)); 26029566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY)); 2603cb20be35SHong Zhang PetscFunctionReturn(0); 2604cb20be35SHong Zhang } 2605cb20be35SHong Zhang 26066718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat C) 2607cb20be35SHong Zhang { 2608cb20be35SHong Zhang MPI_Comm comm; 2609baa3c1c6SHong Zhang PetscMPIInt size; 2610660d5466SHong Zhang PetscInt cm=A->cmap->n,cM,cN=B->cmap->N; 2611baa3c1c6SHong Zhang Mat_TransMatMultDense *atb; 26126718818eSStefano Zampini PetscBool cisdense; 26130acaeb71SStefano Zampini PetscInt i; 26140acaeb71SStefano Zampini const PetscInt *ranges; 2615cb20be35SHong Zhang 2616cb20be35SHong Zhang PetscFunctionBegin; 26176718818eSStefano Zampini MatCheckProduct(C,3); 26185f80ce2aSJacob Faibussowitsch PetscCheck(!C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty"); 26199566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A,&comm)); 2620cb20be35SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) { 262198921bdaSJacob Faibussowitsch SETERRQ(comm,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != B (%" PetscInt_FMT ",%" PetscInt_FMT ")",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 2622cb20be35SHong Zhang } 2623cb20be35SHong Zhang 26244222ddf1SHong Zhang /* create matrix product C */ 26259566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C,cm,B->cmap->n,A->cmap->N,B->cmap->N)); 26269566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C,&cisdense,MATMPIDENSE,MATMPIDENSECUDA,"")); 26276718818eSStefano Zampini if (!cisdense) { 26289566063dSJacob Faibussowitsch PetscCall(MatSetType(C,((PetscObject)A)->type_name)); 26296718818eSStefano Zampini } 26309566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 2631baa3c1c6SHong Zhang 26324222ddf1SHong Zhang /* create data structure for reuse C */ 26339566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 26349566063dSJacob Faibussowitsch PetscCall(PetscNew(&atb)); 26354222ddf1SHong Zhang cM = C->rmap->N; 26369566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(cM*cN,&atb->sendbuf,size,&atb->recvcounts)); 26379566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRanges(C,&ranges)); 26380acaeb71SStefano Zampini for (i=0; i<size; i++) atb->recvcounts[i] = (ranges[i+1] - ranges[i])*cN; 2639baa3c1c6SHong Zhang 26406718818eSStefano Zampini C->product->data = atb; 26416718818eSStefano Zampini C->product->destroy = MatDestroy_MatTransMatMult_MPIDense_MPIDense; 2642cb20be35SHong Zhang PetscFunctionReturn(0); 2643cb20be35SHong Zhang } 2644cb20be35SHong Zhang 26454222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat A, Mat B, PetscReal fill, Mat C) 2646cb20be35SHong Zhang { 2647cc48ffa7SToby Isaac MPI_Comm comm; 2648cc48ffa7SToby Isaac PetscMPIInt i, size; 2649cc48ffa7SToby Isaac PetscInt maxRows, bufsiz; 2650cc48ffa7SToby Isaac PetscMPIInt tag; 26514222ddf1SHong Zhang PetscInt alg; 2652cc48ffa7SToby Isaac Mat_MatTransMultDense *abt; 26534222ddf1SHong Zhang Mat_Product *product = C->product; 26544222ddf1SHong Zhang PetscBool flg; 2655cc48ffa7SToby Isaac 2656cc48ffa7SToby Isaac PetscFunctionBegin; 26576718818eSStefano Zampini MatCheckProduct(C,4); 26585f80ce2aSJacob Faibussowitsch PetscCheck(!C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty"); 26594222ddf1SHong Zhang /* check local size of A and B */ 26605f80ce2aSJacob Faibussowitsch PetscCheck(A->cmap->n == B->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local column dimensions are incompatible, A (%" PetscInt_FMT ") != B (%" PetscInt_FMT ")",A->cmap->n,B->cmap->n); 2661cc48ffa7SToby Isaac 26629566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg,"allgatherv",&flg)); 2663637a0070SStefano Zampini alg = flg ? 0 : 1; 2664cc48ffa7SToby Isaac 26654222ddf1SHong Zhang /* setup matrix product C */ 26669566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C,A->rmap->n,B->rmap->n,A->rmap->N,B->rmap->N)); 26679566063dSJacob Faibussowitsch PetscCall(MatSetType(C,MATMPIDENSE)); 26689566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 26699566063dSJacob Faibussowitsch PetscCall(PetscObjectGetNewTag((PetscObject)C,&tag)); 26704222ddf1SHong Zhang 26714222ddf1SHong Zhang /* create data structure for reuse C */ 26729566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C,&comm)); 26739566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 26749566063dSJacob Faibussowitsch PetscCall(PetscNew(&abt)); 2675cc48ffa7SToby Isaac abt->tag = tag; 2676faa55883SToby Isaac abt->alg = alg; 2677faa55883SToby Isaac switch (alg) { 26784222ddf1SHong Zhang case 1: /* alg: "cyclic" */ 2679cc48ffa7SToby Isaac for (maxRows = 0, i = 0; i < size; i++) maxRows = PetscMax(maxRows, (B->rmap->range[i + 1] - B->rmap->range[i])); 2680cc48ffa7SToby Isaac bufsiz = A->cmap->N * maxRows; 26819566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(bufsiz,&(abt->buf[0]),bufsiz,&(abt->buf[1]))); 2682faa55883SToby Isaac break; 26834222ddf1SHong Zhang default: /* alg: "allgatherv" */ 26849566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(B->rmap->n * B->cmap->N, &(abt->buf[0]), B->rmap->N * B->cmap->N, &(abt->buf[1]))); 26859566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(size,&(abt->recvcounts),size+1,&(abt->recvdispls))); 2686faa55883SToby Isaac for (i = 0; i <= size; i++) abt->recvdispls[i] = B->rmap->range[i] * A->cmap->N; 2687faa55883SToby Isaac for (i = 0; i < size; i++) abt->recvcounts[i] = abt->recvdispls[i + 1] - abt->recvdispls[i]; 2688faa55883SToby Isaac break; 2689faa55883SToby Isaac } 2690cc48ffa7SToby Isaac 26916718818eSStefano Zampini C->product->data = abt; 26926718818eSStefano Zampini C->product->destroy = MatDestroy_MatMatTransMult_MPIDense_MPIDense; 26934222ddf1SHong Zhang C->ops->mattransposemultnumeric = MatMatTransposeMultNumeric_MPIDense_MPIDense; 2694cc48ffa7SToby Isaac PetscFunctionReturn(0); 2695cc48ffa7SToby Isaac } 2696cc48ffa7SToby Isaac 2697faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(Mat A, Mat B, Mat C) 2698cc48ffa7SToby Isaac { 2699cc48ffa7SToby Isaac Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 27006718818eSStefano Zampini Mat_MatTransMultDense *abt; 2701cc48ffa7SToby Isaac MPI_Comm comm; 2702cc48ffa7SToby Isaac PetscMPIInt rank,size, sendsiz, recvsiz, sendto, recvfrom, recvisfrom; 2703f4259b30SLisandro Dalcin PetscScalar *sendbuf, *recvbuf=NULL, *cv; 2704cc48ffa7SToby Isaac PetscInt i,cK=A->cmap->N,k,j,bn; 2705cc48ffa7SToby Isaac PetscScalar _DOne=1.0,_DZero=0.0; 2706637a0070SStefano Zampini const PetscScalar *av,*bv; 270723fff9afSBarry Smith PetscBLASInt cm, cn, ck, alda, blda = 0, clda; 2708cc48ffa7SToby Isaac MPI_Request reqs[2]; 2709cc48ffa7SToby Isaac const PetscInt *ranges; 2710cc48ffa7SToby Isaac 2711cc48ffa7SToby Isaac PetscFunctionBegin; 27126718818eSStefano Zampini MatCheckProduct(C,3); 27135f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 27146718818eSStefano Zampini abt = (Mat_MatTransMultDense*)C->product->data; 27159566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C,&comm)); 27169566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm,&rank)); 27179566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 27189566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A,&av)); 27199566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(b->A,&bv)); 27209566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(c->A,&cv)); 27219566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&i)); 27229566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i,&alda)); 27239566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(b->A,&i)); 27249566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i,&blda)); 27259566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(c->A,&i)); 27269566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i,&clda)); 27279566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRanges(B,&ranges)); 2728cc48ffa7SToby Isaac bn = B->rmap->n; 2729637a0070SStefano Zampini if (blda == bn) { 2730637a0070SStefano Zampini sendbuf = (PetscScalar*)bv; 2731cc48ffa7SToby Isaac } else { 2732cc48ffa7SToby Isaac sendbuf = abt->buf[0]; 2733cc48ffa7SToby Isaac for (k = 0, i = 0; i < cK; i++) { 2734cc48ffa7SToby Isaac for (j = 0; j < bn; j++, k++) { 2735637a0070SStefano Zampini sendbuf[k] = bv[i * blda + j]; 2736cc48ffa7SToby Isaac } 2737cc48ffa7SToby Isaac } 2738cc48ffa7SToby Isaac } 2739cc48ffa7SToby Isaac if (size > 1) { 2740cc48ffa7SToby Isaac sendto = (rank + size - 1) % size; 2741cc48ffa7SToby Isaac recvfrom = (rank + size + 1) % size; 2742cc48ffa7SToby Isaac } else { 2743cc48ffa7SToby Isaac sendto = recvfrom = 0; 2744cc48ffa7SToby Isaac } 27459566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(cK,&ck)); 27469566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(c->A->rmap->n,&cm)); 2747cc48ffa7SToby Isaac recvisfrom = rank; 2748cc48ffa7SToby Isaac for (i = 0; i < size; i++) { 2749cc48ffa7SToby Isaac /* we have finished receiving in sending, bufs can be read/modified */ 2750cc48ffa7SToby Isaac PetscInt nextrecvisfrom = (recvisfrom + 1) % size; /* which process the next recvbuf will originate on */ 2751cc48ffa7SToby Isaac PetscInt nextbn = ranges[nextrecvisfrom + 1] - ranges[nextrecvisfrom]; 2752cc48ffa7SToby Isaac 2753cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2754cc48ffa7SToby Isaac /* start the cyclic sends from sendbuf, to recvbuf (which will switch to sendbuf) */ 2755cc48ffa7SToby Isaac sendsiz = cK * bn; 2756cc48ffa7SToby Isaac recvsiz = cK * nextbn; 2757cc48ffa7SToby Isaac recvbuf = (i & 1) ? abt->buf[0] : abt->buf[1]; 27589566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(sendbuf, sendsiz, MPIU_SCALAR, sendto, abt->tag, comm, &reqs[0])); 27599566063dSJacob Faibussowitsch PetscCallMPI(MPI_Irecv(recvbuf, recvsiz, MPIU_SCALAR, recvfrom, abt->tag, comm, &reqs[1])); 2760cc48ffa7SToby Isaac } 2761cc48ffa7SToby Isaac 2762cc48ffa7SToby Isaac /* local aseq * sendbuf^T */ 27639566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(ranges[recvisfrom + 1] - ranges[recvisfrom], &cn)); 276450ce3c9cSStefano Zampini if (cm && cn && ck) PetscStackCallBLAS("BLASgemm",BLASgemm_("N","T",&cm,&cn,&ck,&_DOne,av,&alda,sendbuf,&cn,&_DZero,cv + clda * ranges[recvisfrom],&clda)); 2765cc48ffa7SToby Isaac 2766cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2767cc48ffa7SToby Isaac /* wait for the sends and receives to complete, swap sendbuf and recvbuf */ 27689566063dSJacob Faibussowitsch PetscCallMPI(MPI_Waitall(2, reqs, MPI_STATUSES_IGNORE)); 2769cc48ffa7SToby Isaac } 2770cc48ffa7SToby Isaac bn = nextbn; 2771cc48ffa7SToby Isaac recvisfrom = nextrecvisfrom; 2772cc48ffa7SToby Isaac sendbuf = recvbuf; 2773cc48ffa7SToby Isaac } 27749566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A,&av)); 27759566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(b->A,&bv)); 27769566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(c->A,&cv)); 27779566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY)); 27789566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY)); 2779cc48ffa7SToby Isaac PetscFunctionReturn(0); 2780cc48ffa7SToby Isaac } 2781cc48ffa7SToby Isaac 2782faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(Mat A, Mat B, Mat C) 2783faa55883SToby Isaac { 2784faa55883SToby Isaac Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 27856718818eSStefano Zampini Mat_MatTransMultDense *abt; 2786faa55883SToby Isaac MPI_Comm comm; 2787637a0070SStefano Zampini PetscMPIInt size; 2788637a0070SStefano Zampini PetscScalar *cv, *sendbuf, *recvbuf; 2789637a0070SStefano Zampini const PetscScalar *av,*bv; 2790637a0070SStefano Zampini PetscInt blda,i,cK=A->cmap->N,k,j,bn; 2791faa55883SToby Isaac PetscScalar _DOne=1.0,_DZero=0.0; 2792637a0070SStefano Zampini PetscBLASInt cm, cn, ck, alda, clda; 2793faa55883SToby Isaac 2794faa55883SToby Isaac PetscFunctionBegin; 27956718818eSStefano Zampini MatCheckProduct(C,3); 27965f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 27976718818eSStefano Zampini abt = (Mat_MatTransMultDense*)C->product->data; 27989566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A,&comm)); 27999566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 28009566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A,&av)); 28019566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(b->A,&bv)); 28029566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(c->A,&cv)); 28039566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&i)); 28049566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i,&alda)); 28059566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(b->A,&blda)); 28069566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(c->A,&i)); 28079566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i,&clda)); 2808faa55883SToby Isaac /* copy transpose of B into buf[0] */ 2809faa55883SToby Isaac bn = B->rmap->n; 2810faa55883SToby Isaac sendbuf = abt->buf[0]; 2811faa55883SToby Isaac recvbuf = abt->buf[1]; 2812faa55883SToby Isaac for (k = 0, j = 0; j < bn; j++) { 2813faa55883SToby Isaac for (i = 0; i < cK; i++, k++) { 2814637a0070SStefano Zampini sendbuf[k] = bv[i * blda + j]; 2815faa55883SToby Isaac } 2816faa55883SToby Isaac } 28179566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(b->A,&bv)); 28189566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgatherv(sendbuf, bn * cK, MPIU_SCALAR, recvbuf, abt->recvcounts, abt->recvdispls, MPIU_SCALAR, comm)); 28199566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(cK,&ck)); 28209566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(c->A->rmap->n,&cm)); 28219566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(c->A->cmap->n,&cn)); 282250ce3c9cSStefano Zampini if (cm && cn && ck) PetscStackCallBLAS("BLASgemm",BLASgemm_("N","N",&cm,&cn,&ck,&_DOne,av,&alda,recvbuf,&ck,&_DZero,cv,&clda)); 28239566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A,&av)); 28249566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(b->A,&bv)); 28259566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(c->A,&cv)); 28269566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY)); 28279566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY)); 2828faa55883SToby Isaac PetscFunctionReturn(0); 2829faa55883SToby Isaac } 2830faa55883SToby Isaac 2831faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat A, Mat B, Mat C) 2832faa55883SToby Isaac { 28336718818eSStefano Zampini Mat_MatTransMultDense *abt; 2834faa55883SToby Isaac 2835faa55883SToby Isaac PetscFunctionBegin; 28366718818eSStefano Zampini MatCheckProduct(C,3); 28375f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 28386718818eSStefano Zampini abt = (Mat_MatTransMultDense*)C->product->data; 2839faa55883SToby Isaac switch (abt->alg) { 2840faa55883SToby Isaac case 1: 28419566063dSJacob Faibussowitsch PetscCall(MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(A, B, C)); 2842faa55883SToby Isaac break; 2843faa55883SToby Isaac default: 28449566063dSJacob Faibussowitsch PetscCall(MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(A, B, C)); 2845faa55883SToby Isaac break; 2846faa55883SToby Isaac } 2847faa55883SToby Isaac PetscFunctionReturn(0); 2848faa55883SToby Isaac } 2849faa55883SToby Isaac 28506718818eSStefano Zampini PetscErrorCode MatDestroy_MatMatMult_MPIDense_MPIDense(void *data) 2851320f2790SHong Zhang { 28526718818eSStefano Zampini Mat_MatMultDense *ab = (Mat_MatMultDense*)data; 2853320f2790SHong Zhang 2854320f2790SHong Zhang PetscFunctionBegin; 28559566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ab->Ce)); 28569566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ab->Ae)); 28579566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ab->Be)); 28589566063dSJacob Faibussowitsch PetscCall(PetscFree(ab)); 2859320f2790SHong Zhang PetscFunctionReturn(0); 2860320f2790SHong Zhang } 2861320f2790SHong Zhang 28625242a7b1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 2863320f2790SHong Zhang PetscErrorCode MatMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 2864320f2790SHong Zhang { 28656718818eSStefano Zampini Mat_MatMultDense *ab; 2866320f2790SHong Zhang 2867320f2790SHong Zhang PetscFunctionBegin; 28686718818eSStefano Zampini MatCheckProduct(C,3); 28695f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Missing product data"); 28706718818eSStefano Zampini ab = (Mat_MatMultDense*)C->product->data; 28719566063dSJacob Faibussowitsch PetscCall(MatConvert_MPIDense_Elemental(A,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Ae)); 28729566063dSJacob Faibussowitsch PetscCall(MatConvert_MPIDense_Elemental(B,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Be)); 28739566063dSJacob Faibussowitsch PetscCall(MatMatMultNumeric_Elemental(ab->Ae,ab->Be,ab->Ce)); 28749566063dSJacob Faibussowitsch PetscCall(MatConvert(ab->Ce,MATMPIDENSE,MAT_REUSE_MATRIX,&C)); 2875320f2790SHong Zhang PetscFunctionReturn(0); 2876320f2790SHong Zhang } 2877320f2790SHong Zhang 28786718818eSStefano Zampini static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat C) 2879320f2790SHong Zhang { 2880320f2790SHong Zhang Mat Ae,Be,Ce; 2881320f2790SHong Zhang Mat_MatMultDense *ab; 2882320f2790SHong Zhang 2883320f2790SHong Zhang PetscFunctionBegin; 28846718818eSStefano Zampini MatCheckProduct(C,4); 28855f80ce2aSJacob Faibussowitsch PetscCheck(!C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty"); 28864222ddf1SHong Zhang /* check local size of A and B */ 2887320f2790SHong Zhang if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend) { 288898921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != B (%" PetscInt_FMT ",%" PetscInt_FMT ")",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 2889320f2790SHong Zhang } 2890320f2790SHong Zhang 28914222ddf1SHong Zhang /* create elemental matrices Ae and Be */ 28929566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &Ae)); 28939566063dSJacob Faibussowitsch PetscCall(MatSetSizes(Ae,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N)); 28949566063dSJacob Faibussowitsch PetscCall(MatSetType(Ae,MATELEMENTAL)); 28959566063dSJacob Faibussowitsch PetscCall(MatSetUp(Ae)); 28969566063dSJacob Faibussowitsch PetscCall(MatSetOption(Ae,MAT_ROW_ORIENTED,PETSC_FALSE)); 2897320f2790SHong Zhang 28989566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)B), &Be)); 28999566063dSJacob Faibussowitsch PetscCall(MatSetSizes(Be,PETSC_DECIDE,PETSC_DECIDE,B->rmap->N,B->cmap->N)); 29009566063dSJacob Faibussowitsch PetscCall(MatSetType(Be,MATELEMENTAL)); 29019566063dSJacob Faibussowitsch PetscCall(MatSetUp(Be)); 29029566063dSJacob Faibussowitsch PetscCall(MatSetOption(Be,MAT_ROW_ORIENTED,PETSC_FALSE)); 2903320f2790SHong Zhang 29044222ddf1SHong Zhang /* compute symbolic Ce = Ae*Be */ 29059566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)C),&Ce)); 29069566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_Elemental(Ae,Be,fill,Ce)); 29074222ddf1SHong Zhang 29084222ddf1SHong Zhang /* setup C */ 29099566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C,A->rmap->n,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE)); 29109566063dSJacob Faibussowitsch PetscCall(MatSetType(C,MATDENSE)); 29119566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 2912320f2790SHong Zhang 2913320f2790SHong Zhang /* create data structure for reuse Cdense */ 29149566063dSJacob Faibussowitsch PetscCall(PetscNew(&ab)); 2915320f2790SHong Zhang ab->Ae = Ae; 2916320f2790SHong Zhang ab->Be = Be; 2917320f2790SHong Zhang ab->Ce = Ce; 29186718818eSStefano Zampini 29196718818eSStefano Zampini C->product->data = ab; 29206718818eSStefano Zampini C->product->destroy = MatDestroy_MatMatMult_MPIDense_MPIDense; 29214222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIDense; 2922320f2790SHong Zhang PetscFunctionReturn(0); 2923320f2790SHong Zhang } 29244222ddf1SHong Zhang #endif 29254222ddf1SHong Zhang /* ----------------------------------------------- */ 29264222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 29274222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_AB(Mat C) 2928320f2790SHong Zhang { 2929320f2790SHong Zhang PetscFunctionBegin; 29304222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIDense; 29314222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 2932320f2790SHong Zhang PetscFunctionReturn(0); 2933320f2790SHong Zhang } 29345242a7b1SHong Zhang #endif 293586aefd0dSHong Zhang 29364222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_AtB(Mat C) 29374222ddf1SHong Zhang { 29384222ddf1SHong Zhang Mat_Product *product = C->product; 29394222ddf1SHong Zhang Mat A = product->A,B=product->B; 29404222ddf1SHong Zhang 29414222ddf1SHong Zhang PetscFunctionBegin; 29424222ddf1SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) 294398921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 29446718818eSStefano Zampini C->ops->transposematmultsymbolic = MatTransposeMatMultSymbolic_MPIDense_MPIDense; 29456718818eSStefano Zampini C->ops->productsymbolic = MatProductSymbolic_AtB; 29464222ddf1SHong Zhang PetscFunctionReturn(0); 29474222ddf1SHong Zhang } 29484222ddf1SHong Zhang 29494222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_ABt(Mat C) 29504222ddf1SHong Zhang { 29514222ddf1SHong Zhang Mat_Product *product = C->product; 29524222ddf1SHong Zhang const char *algTypes[2] = {"allgatherv","cyclic"}; 29534222ddf1SHong Zhang PetscInt alg,nalg = 2; 29544222ddf1SHong Zhang PetscBool flg = PETSC_FALSE; 29554222ddf1SHong Zhang 29564222ddf1SHong Zhang PetscFunctionBegin; 29574222ddf1SHong Zhang /* Set default algorithm */ 29584222ddf1SHong Zhang alg = 0; /* default is allgatherv */ 29599566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg,"default",&flg)); 29604222ddf1SHong Zhang if (flg) { 29619566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg])); 29624222ddf1SHong Zhang } 29634222ddf1SHong Zhang 29644222ddf1SHong Zhang /* Get runtime option */ 29654222ddf1SHong Zhang if (product->api_user) { 2966d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatMatTransposeMult","Mat"); 29679566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-matmattransmult_mpidense_mpidense_via","Algorithmic approach","MatMatTransposeMult",algTypes,nalg,algTypes[alg],&alg,&flg)); 2968d0609cedSBarry Smith PetscOptionsEnd(); 29694222ddf1SHong Zhang } else { 2970d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatProduct_ABt","Mat"); 29719566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm","Algorithmic approach","MatProduct_ABt",algTypes,nalg,algTypes[alg],&alg,&flg)); 2972d0609cedSBarry Smith PetscOptionsEnd(); 29734222ddf1SHong Zhang } 29744222ddf1SHong Zhang if (flg) { 29759566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg])); 29764222ddf1SHong Zhang } 29774222ddf1SHong Zhang 29784222ddf1SHong Zhang C->ops->mattransposemultsymbolic = MatMatTransposeMultSymbolic_MPIDense_MPIDense; 29794222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_ABt; 29804222ddf1SHong Zhang PetscFunctionReturn(0); 29814222ddf1SHong Zhang } 29824222ddf1SHong Zhang 29834222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense(Mat C) 29844222ddf1SHong Zhang { 29854222ddf1SHong Zhang Mat_Product *product = C->product; 29864222ddf1SHong Zhang 29874222ddf1SHong Zhang PetscFunctionBegin; 29884222ddf1SHong Zhang switch (product->type) { 29894222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 29904222ddf1SHong Zhang case MATPRODUCT_AB: 29919566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIDense_AB(C)); 29924222ddf1SHong Zhang break; 29934222ddf1SHong Zhang #endif 29944222ddf1SHong Zhang case MATPRODUCT_AtB: 29959566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIDense_AtB(C)); 29964222ddf1SHong Zhang break; 29974222ddf1SHong Zhang case MATPRODUCT_ABt: 29989566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIDense_ABt(C)); 29994222ddf1SHong Zhang break; 30006718818eSStefano Zampini default: 30016718818eSStefano Zampini break; 30024222ddf1SHong Zhang } 30034222ddf1SHong Zhang PetscFunctionReturn(0); 30044222ddf1SHong Zhang } 3005