1be1d678aSKris Buschelman 2ed3cc1f0SBarry Smith /* 3ed3cc1f0SBarry Smith Basic functions for basic parallel dense matrices. 4ed3cc1f0SBarry Smith */ 5ed3cc1f0SBarry Smith 6c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h> /*I "petscmat.h" I*/ 78949adfdSHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 8baa3c1c6SHong Zhang #include <petscblaslapack.h> 98965ea79SLois Curfman McInnes 10ab92ecdeSBarry Smith /*@ 11ab92ecdeSBarry Smith 12ab92ecdeSBarry Smith MatDenseGetLocalMatrix - For a MATMPIDENSE or MATSEQDENSE matrix returns the sequential 13ab92ecdeSBarry Smith matrix that represents the operator. For sequential matrices it returns itself. 14ab92ecdeSBarry Smith 15ab92ecdeSBarry Smith Input Parameter: 16ab92ecdeSBarry Smith . A - the Seq or MPI dense matrix 17ab92ecdeSBarry Smith 18ab92ecdeSBarry Smith Output Parameter: 19ab92ecdeSBarry Smith . B - the inner matrix 20ab92ecdeSBarry Smith 218e6c10adSSatish Balay Level: intermediate 228e6c10adSSatish Balay 23ab92ecdeSBarry Smith @*/ 24ab92ecdeSBarry Smith PetscErrorCode MatDenseGetLocalMatrix(Mat A,Mat *B) 25ab92ecdeSBarry Smith { 26ab92ecdeSBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 27ace3abfcSBarry Smith PetscBool flg; 28ab92ecdeSBarry Smith 29ab92ecdeSBarry Smith PetscFunctionBegin; 30d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 31d5ea218eSStefano Zampini PetscValidPointer(B,2); 329566063dSJacob Faibussowitsch PetscCall(PetscObjectBaseTypeCompare((PetscObject)A,MATMPIDENSE,&flg)); 332205254eSKarl Rupp if (flg) *B = mat->A; 34f140bc17SStefano Zampini else { 359566063dSJacob Faibussowitsch PetscCall(PetscObjectBaseTypeCompare((PetscObject)A,MATSEQDENSE,&flg)); 3628b400f6SJacob Faibussowitsch PetscCheck(flg,PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Not for matrix type %s",((PetscObject)A)->type_name); 37f140bc17SStefano Zampini *B = A; 38f140bc17SStefano Zampini } 39ab92ecdeSBarry Smith PetscFunctionReturn(0); 40ab92ecdeSBarry Smith } 41ab92ecdeSBarry Smith 42a76f77c3SStefano Zampini PetscErrorCode MatCopy_MPIDense(Mat A, Mat B, MatStructure s) 43a76f77c3SStefano Zampini { 44a76f77c3SStefano Zampini Mat_MPIDense *Amat = (Mat_MPIDense*)A->data; 45a76f77c3SStefano Zampini Mat_MPIDense *Bmat = (Mat_MPIDense*)B->data; 46a76f77c3SStefano Zampini 47a76f77c3SStefano Zampini PetscFunctionBegin; 489566063dSJacob Faibussowitsch PetscCall(MatCopy(Amat->A,Bmat->A,s)); 49a76f77c3SStefano Zampini PetscFunctionReturn(0); 50a76f77c3SStefano Zampini } 51a76f77c3SStefano Zampini 522f605a99SJose E. Roman PetscErrorCode MatShift_MPIDense(Mat A,PetscScalar alpha) 532f605a99SJose E. Roman { 542f605a99SJose E. Roman Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 552f605a99SJose E. Roman PetscInt j,lda,rstart = A->rmap->rstart,rend = A->rmap->rend,rend2; 562f605a99SJose E. Roman PetscScalar *v; 572f605a99SJose E. Roman 582f605a99SJose E. Roman PetscFunctionBegin; 592f605a99SJose E. Roman PetscCall(MatDenseGetArray(mat->A,&v)); 602f605a99SJose E. Roman PetscCall(MatDenseGetLDA(mat->A,&lda)); 612f605a99SJose E. Roman rend2 = PetscMin(rend,A->cmap->N); 622f605a99SJose E. Roman if (rend2>rstart) { 632f605a99SJose E. Roman for (j=rstart; j<rend2; j++) v[j-rstart+j*lda] += alpha; 642f605a99SJose E. Roman PetscCall(PetscLogFlops(rend2-rstart)); 652f605a99SJose E. Roman } 662f605a99SJose E. Roman PetscCall(MatDenseRestoreArray(mat->A,&v)); 672f605a99SJose E. Roman PetscFunctionReturn(0); 682f605a99SJose E. Roman } 692f605a99SJose E. Roman 70ba8c8a56SBarry Smith PetscErrorCode MatGetRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 71ba8c8a56SBarry Smith { 72ba8c8a56SBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 73d0f46423SBarry Smith PetscInt lrow,rstart = A->rmap->rstart,rend = A->rmap->rend; 74ba8c8a56SBarry Smith 75ba8c8a56SBarry Smith PetscFunctionBegin; 76aed4548fSBarry Smith PetscCheck(row >= rstart && row < rend,PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows"); 77ba8c8a56SBarry Smith lrow = row - rstart; 789566063dSJacob Faibussowitsch PetscCall(MatGetRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v)); 79ba8c8a56SBarry Smith PetscFunctionReturn(0); 80ba8c8a56SBarry Smith } 81ba8c8a56SBarry Smith 82637a0070SStefano Zampini PetscErrorCode MatRestoreRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 83ba8c8a56SBarry Smith { 84637a0070SStefano Zampini Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 85637a0070SStefano Zampini PetscInt lrow,rstart = A->rmap->rstart,rend = A->rmap->rend; 86ba8c8a56SBarry Smith 87ba8c8a56SBarry Smith PetscFunctionBegin; 88aed4548fSBarry Smith PetscCheck(row >= rstart && row < rend,PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows"); 89637a0070SStefano Zampini lrow = row - rstart; 909566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v)); 91ba8c8a56SBarry Smith PetscFunctionReturn(0); 92ba8c8a56SBarry Smith } 93ba8c8a56SBarry Smith 9411bd1e4dSLisandro Dalcin PetscErrorCode MatGetDiagonalBlock_MPIDense(Mat A,Mat *a) 950de54da6SSatish Balay { 960de54da6SSatish Balay Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 97d0f46423SBarry Smith PetscInt m = A->rmap->n,rstart = A->rmap->rstart; 9887828ca2SBarry Smith PetscScalar *array; 990de54da6SSatish Balay MPI_Comm comm; 1004b6ae80fSStefano Zampini PetscBool flg; 10111bd1e4dSLisandro Dalcin Mat B; 1020de54da6SSatish Balay 1030de54da6SSatish Balay PetscFunctionBegin; 1049566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A,&flg)); 10528b400f6SJacob Faibussowitsch PetscCheck(flg,PETSC_COMM_SELF,PETSC_ERR_SUP,"Only square matrices supported."); 1069566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)A,"DiagonalBlock",(PetscObject*)&B)); 107616b8fbbSStefano Zampini if (!B) { /* This should use MatDenseGetSubMatrix (not create), but we would need a call like MatRestoreDiagonalBlock */ 1084b6ae80fSStefano Zampini 1099566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)mdn->A,MATSEQDENSECUDA,&flg)); 11028b400f6SJacob Faibussowitsch PetscCheck(!flg,PETSC_COMM_SELF,PETSC_ERR_SUP,"Not coded for %s. Send an email to petsc-dev@mcs.anl.gov to request this feature",MATSEQDENSECUDA); 1119566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)(mdn->A),&comm)); 1129566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,&B)); 1139566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B,m,m,m,m)); 1149566063dSJacob Faibussowitsch PetscCall(MatSetType(B,((PetscObject)mdn->A)->type_name)); 1159566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(mdn->A,(const PetscScalar**)&array)); 1169566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(B,array+m*rstart)); 1179566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(mdn->A,(const PetscScalar**)&array)); 1189566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)A,"DiagonalBlock",(PetscObject)B)); 11911bd1e4dSLisandro Dalcin *a = B; 1209566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 1212205254eSKarl Rupp } else *a = B; 1220de54da6SSatish Balay PetscFunctionReturn(0); 1230de54da6SSatish Balay } 1240de54da6SSatish Balay 12513f74950SBarry Smith PetscErrorCode MatSetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],const PetscScalar v[],InsertMode addv) 1268965ea79SLois Curfman McInnes { 12739b7565bSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)mat->data; 128d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 129ace3abfcSBarry Smith PetscBool roworiented = A->roworiented; 1308965ea79SLois Curfman McInnes 1313a40ed3dSBarry Smith PetscFunctionBegin; 1328965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 1335ef9f2a5SBarry Smith if (idxm[i] < 0) continue; 13408401ef6SPierre Jolivet PetscCheck(idxm[i] < mat->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 1358965ea79SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 1368965ea79SLois Curfman McInnes row = idxm[i] - rstart; 13739b7565bSBarry Smith if (roworiented) { 1389566063dSJacob Faibussowitsch PetscCall(MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv)); 1393a40ed3dSBarry Smith } else { 1408965ea79SLois Curfman McInnes for (j=0; j<n; j++) { 1415ef9f2a5SBarry Smith if (idxn[j] < 0) continue; 14208401ef6SPierre Jolivet PetscCheck(idxn[j] < mat->cmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 1439566063dSJacob Faibussowitsch PetscCall(MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv)); 14439b7565bSBarry Smith } 1458965ea79SLois Curfman McInnes } 1462205254eSKarl Rupp } else if (!A->donotstash) { 1475080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 14839b7565bSBarry Smith if (roworiented) { 1499566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash,idxm[i],n,idxn,v+i*n,PETSC_FALSE)); 150d36fbae8SSatish Balay } else { 1519566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash,idxm[i],n,idxn,v+i,m,PETSC_FALSE)); 15239b7565bSBarry Smith } 153b49de8d1SLois Curfman McInnes } 154b49de8d1SLois Curfman McInnes } 1553a40ed3dSBarry Smith PetscFunctionReturn(0); 156b49de8d1SLois Curfman McInnes } 157b49de8d1SLois Curfman McInnes 15813f74950SBarry Smith PetscErrorCode MatGetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 159b49de8d1SLois Curfman McInnes { 160b49de8d1SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 161d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 162b49de8d1SLois Curfman McInnes 1633a40ed3dSBarry Smith PetscFunctionBegin; 164b49de8d1SLois Curfman McInnes for (i=0; i<m; i++) { 16554c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 16654c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 167b49de8d1SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 168b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 169b49de8d1SLois Curfman McInnes for (j=0; j<n; j++) { 17054c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 17154c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 1729566063dSJacob Faibussowitsch PetscCall(MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j)); 173b49de8d1SLois Curfman McInnes } 174e7e72b3dSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 1758965ea79SLois Curfman McInnes } 1763a40ed3dSBarry Smith PetscFunctionReturn(0); 1778965ea79SLois Curfman McInnes } 1788965ea79SLois Curfman McInnes 17949a6ff4bSBarry Smith static PetscErrorCode MatDenseGetLDA_MPIDense(Mat A,PetscInt *lda) 18049a6ff4bSBarry Smith { 18149a6ff4bSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 18249a6ff4bSBarry Smith 18349a6ff4bSBarry Smith PetscFunctionBegin; 1849566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,lda)); 18549a6ff4bSBarry Smith PetscFunctionReturn(0); 18649a6ff4bSBarry Smith } 18749a6ff4bSBarry Smith 188ad16ce7aSStefano Zampini static PetscErrorCode MatDenseSetLDA_MPIDense(Mat A,PetscInt lda) 189ad16ce7aSStefano Zampini { 190ad16ce7aSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 19117359960SJose E. Roman PetscBool iscuda; 192ad16ce7aSStefano Zampini 193ad16ce7aSStefano Zampini PetscFunctionBegin; 19417359960SJose E. Roman if (!a->A) { 19528b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1969566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->rmap)); 1979566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->cmap)); 1989566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF,&a->A)); 1999566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)a->A)); 2009566063dSJacob Faibussowitsch PetscCall(MatSetSizes(a->A,A->rmap->n,A->cmap->N,A->rmap->n,A->cmap->N)); 2019566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A,MATMPIDENSECUDA,&iscuda)); 2029566063dSJacob Faibussowitsch PetscCall(MatSetType(a->A,iscuda ? MATSEQDENSECUDA : MATSEQDENSE)); 20317359960SJose E. Roman } 2049566063dSJacob Faibussowitsch PetscCall(MatDenseSetLDA(a->A,lda)); 205ad16ce7aSStefano Zampini PetscFunctionReturn(0); 206ad16ce7aSStefano Zampini } 207ad16ce7aSStefano Zampini 208637a0070SStefano Zampini static PetscErrorCode MatDenseGetArray_MPIDense(Mat A,PetscScalar **array) 209ff14e315SSatish Balay { 210ff14e315SSatish Balay Mat_MPIDense *a = (Mat_MPIDense*)A->data; 211ff14e315SSatish Balay 2123a40ed3dSBarry Smith PetscFunctionBegin; 21328b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2149566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(a->A,array)); 2153a40ed3dSBarry Smith PetscFunctionReturn(0); 216ff14e315SSatish Balay } 217ff14e315SSatish Balay 218637a0070SStefano Zampini static PetscErrorCode MatDenseGetArrayRead_MPIDense(Mat A,const PetscScalar **array) 2198572280aSBarry Smith { 2208572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 2218572280aSBarry Smith 2228572280aSBarry Smith PetscFunctionBegin; 22328b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2249566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A,array)); 2258572280aSBarry Smith PetscFunctionReturn(0); 2268572280aSBarry Smith } 2278572280aSBarry Smith 2286947451fSStefano Zampini static PetscErrorCode MatDenseGetArrayWrite_MPIDense(Mat A,PetscScalar **array) 2296947451fSStefano Zampini { 2306947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 2316947451fSStefano Zampini 2326947451fSStefano Zampini PetscFunctionBegin; 23328b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2349566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(a->A,array)); 2356947451fSStefano Zampini PetscFunctionReturn(0); 2366947451fSStefano Zampini } 2376947451fSStefano Zampini 238637a0070SStefano Zampini static PetscErrorCode MatDensePlaceArray_MPIDense(Mat A,const PetscScalar *array) 239d3042a70SBarry Smith { 240d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 241d3042a70SBarry Smith 242d3042a70SBarry Smith PetscFunctionBegin; 24328b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 24428b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2459566063dSJacob Faibussowitsch PetscCall(MatDensePlaceArray(a->A,array)); 246d3042a70SBarry Smith PetscFunctionReturn(0); 247d3042a70SBarry Smith } 248d3042a70SBarry Smith 249d3042a70SBarry Smith static PetscErrorCode MatDenseResetArray_MPIDense(Mat A) 250d3042a70SBarry Smith { 251d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 252d3042a70SBarry Smith 253d3042a70SBarry Smith PetscFunctionBegin; 25428b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 25528b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2569566063dSJacob Faibussowitsch PetscCall(MatDenseResetArray(a->A)); 257d3042a70SBarry Smith PetscFunctionReturn(0); 258d3042a70SBarry Smith } 259d3042a70SBarry Smith 260d5ea218eSStefano Zampini static PetscErrorCode MatDenseReplaceArray_MPIDense(Mat A,const PetscScalar *array) 261d5ea218eSStefano Zampini { 262d5ea218eSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 263d5ea218eSStefano Zampini 264d5ea218eSStefano Zampini PetscFunctionBegin; 26528b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 26628b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2679566063dSJacob Faibussowitsch PetscCall(MatDenseReplaceArray(a->A,array)); 268d5ea218eSStefano Zampini PetscFunctionReturn(0); 269d5ea218eSStefano Zampini } 270d5ea218eSStefano Zampini 2717dae84e0SHong Zhang static PetscErrorCode MatCreateSubMatrix_MPIDense(Mat A,IS isrow,IS iscol,MatReuse scall,Mat *B) 272ca3fa75bSLois Curfman McInnes { 273ca3fa75bSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data,*newmatd; 274637a0070SStefano Zampini PetscInt lda,i,j,rstart,rend,nrows,ncols,Ncols,nlrows,nlcols; 2755d0c19d7SBarry Smith const PetscInt *irow,*icol; 276637a0070SStefano Zampini const PetscScalar *v; 277637a0070SStefano Zampini PetscScalar *bv; 278ca3fa75bSLois Curfman McInnes Mat newmat; 2794aa3045dSJed Brown IS iscol_local; 28042a884f0SBarry Smith MPI_Comm comm_is,comm_mat; 281ca3fa75bSLois Curfman McInnes 282ca3fa75bSLois Curfman McInnes PetscFunctionBegin; 2839566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A,&comm_mat)); 2849566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)iscol,&comm_is)); 28508401ef6SPierre Jolivet PetscCheck(comm_mat == comm_is,PETSC_COMM_SELF,PETSC_ERR_ARG_NOTSAMECOMM,"IS communicator must match matrix communicator"); 28642a884f0SBarry Smith 2879566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol,&iscol_local)); 2889566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isrow,&irow)); 2899566063dSJacob Faibussowitsch PetscCall(ISGetIndices(iscol_local,&icol)); 2909566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isrow,&nrows)); 2919566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol,&ncols)); 2929566063dSJacob Faibussowitsch PetscCall(ISGetSize(iscol,&Ncols)); /* global number of columns, size of iscol_local */ 293ca3fa75bSLois Curfman McInnes 294ca3fa75bSLois Curfman McInnes /* No parallel redistribution currently supported! Should really check each index set 2957eba5e9cSLois Curfman McInnes to comfirm that it is OK. ... Currently supports only submatrix same partitioning as 2967eba5e9cSLois Curfman McInnes original matrix! */ 297ca3fa75bSLois Curfman McInnes 2989566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A,&nlrows,&nlcols)); 2999566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A,&rstart,&rend)); 300ca3fa75bSLois Curfman McInnes 301ca3fa75bSLois Curfman McInnes /* Check submatrix call */ 302ca3fa75bSLois Curfman McInnes if (scall == MAT_REUSE_MATRIX) { 303e32f2f54SBarry Smith /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */ 3047eba5e9cSLois Curfman McInnes /* Really need to test rows and column sizes! */ 305ca3fa75bSLois Curfman McInnes newmat = *B; 306ca3fa75bSLois Curfman McInnes } else { 307ca3fa75bSLois Curfman McInnes /* Create and fill new matrix */ 3089566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&newmat)); 3099566063dSJacob Faibussowitsch PetscCall(MatSetSizes(newmat,nrows,ncols,PETSC_DECIDE,Ncols)); 3109566063dSJacob Faibussowitsch PetscCall(MatSetType(newmat,((PetscObject)A)->type_name)); 3119566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(newmat,NULL)); 312ca3fa75bSLois Curfman McInnes } 313ca3fa75bSLois Curfman McInnes 314ca3fa75bSLois Curfman McInnes /* Now extract the data pointers and do the copy, column at a time */ 315ca3fa75bSLois Curfman McInnes newmatd = (Mat_MPIDense*)newmat->data; 3169566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(newmatd->A,&bv)); 3179566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(mat->A,&v)); 3189566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(mat->A,&lda)); 3194aa3045dSJed Brown for (i=0; i<Ncols; i++) { 320637a0070SStefano Zampini const PetscScalar *av = v + lda*icol[i]; 321ca3fa75bSLois Curfman McInnes for (j=0; j<nrows; j++) { 3227eba5e9cSLois Curfman McInnes *bv++ = av[irow[j] - rstart]; 323ca3fa75bSLois Curfman McInnes } 324ca3fa75bSLois Curfman McInnes } 3259566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(mat->A,&v)); 3269566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(newmatd->A,&bv)); 327ca3fa75bSLois Curfman McInnes 328ca3fa75bSLois Curfman McInnes /* Assemble the matrices so that the correct flags are set */ 3299566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY)); 3309566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY)); 331ca3fa75bSLois Curfman McInnes 332ca3fa75bSLois Curfman McInnes /* Free work space */ 3339566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isrow,&irow)); 3349566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(iscol_local,&icol)); 3359566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 336ca3fa75bSLois Curfman McInnes *B = newmat; 337ca3fa75bSLois Curfman McInnes PetscFunctionReturn(0); 338ca3fa75bSLois Curfman McInnes } 339ca3fa75bSLois Curfman McInnes 340637a0070SStefano Zampini PetscErrorCode MatDenseRestoreArray_MPIDense(Mat A,PetscScalar **array) 341ff14e315SSatish Balay { 34273a71a0fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 34373a71a0fSBarry Smith 3443a40ed3dSBarry Smith PetscFunctionBegin; 3459566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(a->A,array)); 3463a40ed3dSBarry Smith PetscFunctionReturn(0); 347ff14e315SSatish Balay } 348ff14e315SSatish Balay 349637a0070SStefano Zampini PetscErrorCode MatDenseRestoreArrayRead_MPIDense(Mat A,const PetscScalar **array) 3508572280aSBarry Smith { 3518572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 3528572280aSBarry Smith 3538572280aSBarry Smith PetscFunctionBegin; 3549566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A,array)); 3558572280aSBarry Smith PetscFunctionReturn(0); 3568572280aSBarry Smith } 3578572280aSBarry Smith 3586947451fSStefano Zampini PetscErrorCode MatDenseRestoreArrayWrite_MPIDense(Mat A,PetscScalar **array) 3596947451fSStefano Zampini { 3606947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 3616947451fSStefano Zampini 3626947451fSStefano Zampini PetscFunctionBegin; 3639566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(a->A,array)); 3646947451fSStefano Zampini PetscFunctionReturn(0); 3656947451fSStefano Zampini } 3666947451fSStefano Zampini 367dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode) 3688965ea79SLois Curfman McInnes { 36939ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 37013f74950SBarry Smith PetscInt nstash,reallocs; 3718965ea79SLois Curfman McInnes 3723a40ed3dSBarry Smith PetscFunctionBegin; 3734067683fSStefano Zampini if (mdn->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 3748965ea79SLois Curfman McInnes 3759566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range)); 3769566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs)); 3779566063dSJacob Faibussowitsch PetscCall(PetscInfo(mdn->A,"Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n",nstash,reallocs)); 3783a40ed3dSBarry Smith PetscFunctionReturn(0); 3798965ea79SLois Curfman McInnes } 3808965ea79SLois Curfman McInnes 381dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode) 3828965ea79SLois Curfman McInnes { 38339ddd567SLois Curfman McInnes Mat_MPIDense *mdn=(Mat_MPIDense*)mat->data; 38413f74950SBarry Smith PetscInt i,*row,*col,flg,j,rstart,ncols; 38513f74950SBarry Smith PetscMPIInt n; 38687828ca2SBarry Smith PetscScalar *val; 3878965ea79SLois Curfman McInnes 3883a40ed3dSBarry Smith PetscFunctionBegin; 389910cf402Sprj- if (!mdn->donotstash && !mat->nooffprocentries) { 3908965ea79SLois Curfman McInnes /* wait on receives */ 3917ef1d9bdSSatish Balay while (1) { 3929566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg)); 3937ef1d9bdSSatish Balay if (!flg) break; 3948965ea79SLois Curfman McInnes 3957ef1d9bdSSatish Balay for (i=0; i<n;) { 3967ef1d9bdSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 3972205254eSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 3982205254eSKarl Rupp if (row[j] != rstart) break; 3992205254eSKarl Rupp } 4007ef1d9bdSSatish Balay if (j < n) ncols = j-i; 4017ef1d9bdSSatish Balay else ncols = n-i; 4027ef1d9bdSSatish Balay /* Now assemble all these values with a single function call */ 4039566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,mat->insertmode)); 4047ef1d9bdSSatish Balay i = j; 4058965ea79SLois Curfman McInnes } 4067ef1d9bdSSatish Balay } 4079566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 408910cf402Sprj- } 4098965ea79SLois Curfman McInnes 4109566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mdn->A,mode)); 4119566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mdn->A,mode)); 4123a40ed3dSBarry Smith PetscFunctionReturn(0); 4138965ea79SLois Curfman McInnes } 4148965ea79SLois Curfman McInnes 415dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIDense(Mat A) 4168965ea79SLois Curfman McInnes { 41739ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 4183a40ed3dSBarry Smith 4193a40ed3dSBarry Smith PetscFunctionBegin; 4209566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 4213a40ed3dSBarry Smith PetscFunctionReturn(0); 4228965ea79SLois Curfman McInnes } 4238965ea79SLois Curfman McInnes 424637a0070SStefano Zampini PetscErrorCode MatZeroRows_MPIDense(Mat A,PetscInt n,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 4258965ea79SLois Curfman McInnes { 42639ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 427637a0070SStefano Zampini PetscInt i,len,*lrows; 428637a0070SStefano Zampini 429637a0070SStefano Zampini PetscFunctionBegin; 430637a0070SStefano Zampini /* get locally owned rows */ 4319566063dSJacob Faibussowitsch PetscCall(PetscLayoutMapLocal(A->rmap,n,rows,&len,&lrows,NULL)); 432637a0070SStefano Zampini /* fix right hand side if needed */ 433637a0070SStefano Zampini if (x && b) { 43497b48c8fSBarry Smith const PetscScalar *xx; 43597b48c8fSBarry Smith PetscScalar *bb; 4368965ea79SLois Curfman McInnes 4379566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 4389566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(b, &bb)); 439637a0070SStefano Zampini for (i=0;i<len;++i) bb[lrows[i]] = diag*xx[lrows[i]]; 4409566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 4419566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(b, &bb)); 44297b48c8fSBarry Smith } 4439566063dSJacob Faibussowitsch PetscCall(MatZeroRows(l->A,len,lrows,0.0,NULL,NULL)); 444e2eb51b1SBarry Smith if (diag != 0.0) { 445637a0070SStefano Zampini Vec d; 446b9679d65SBarry Smith 4479566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(A,NULL,&d)); 4489566063dSJacob Faibussowitsch PetscCall(VecSet(d,diag)); 4499566063dSJacob Faibussowitsch PetscCall(MatDiagonalSet(A,d,INSERT_VALUES)); 4509566063dSJacob Faibussowitsch PetscCall(VecDestroy(&d)); 451b9679d65SBarry Smith } 4529566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 4533a40ed3dSBarry Smith PetscFunctionReturn(0); 4548965ea79SLois Curfman McInnes } 4558965ea79SLois Curfman McInnes 456cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMult_SeqDense(Mat,Vec,Vec); 457cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultAdd_SeqDense(Mat,Vec,Vec,Vec); 458cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTranspose_SeqDense(Mat,Vec,Vec); 459cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTransposeAdd_SeqDense(Mat,Vec,Vec,Vec); 460cc2e6a90SBarry Smith 461dfbe8321SBarry Smith PetscErrorCode MatMult_MPIDense(Mat mat,Vec xx,Vec yy) 4628965ea79SLois Curfman McInnes { 46339ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 464637a0070SStefano Zampini const PetscScalar *ax; 465637a0070SStefano Zampini PetscScalar *ay; 466d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 467c456f294SBarry Smith 4683a40ed3dSBarry Smith PetscFunctionBegin; 4696f08ad05SPierre Jolivet if (!mdn->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(mat)); 4709566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(xx,&ax,&axmtype)); 4719566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(mdn->lvec,&ay,&aymtype)); 4729566063dSJacob Faibussowitsch PetscCall(PetscSFBcastWithMemTypeBegin(mdn->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPI_REPLACE)); 4739566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ax,ay,MPI_REPLACE)); 4749566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(mdn->lvec,&ay)); 4759566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(xx,&ax)); 4769566063dSJacob Faibussowitsch PetscCall((*mdn->A->ops->mult)(mdn->A,mdn->lvec,yy)); 4773a40ed3dSBarry Smith PetscFunctionReturn(0); 4788965ea79SLois Curfman McInnes } 4798965ea79SLois Curfman McInnes 480dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz) 4818965ea79SLois Curfman McInnes { 48239ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 483637a0070SStefano Zampini const PetscScalar *ax; 484637a0070SStefano Zampini PetscScalar *ay; 485d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 486c456f294SBarry Smith 4873a40ed3dSBarry Smith PetscFunctionBegin; 4886f08ad05SPierre Jolivet if (!mdn->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(mat)); 4899566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(xx,&ax,&axmtype)); 4909566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(mdn->lvec,&ay,&aymtype)); 4919566063dSJacob Faibussowitsch PetscCall(PetscSFBcastWithMemTypeBegin(mdn->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPI_REPLACE)); 4929566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ax,ay,MPI_REPLACE)); 4939566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(mdn->lvec,&ay)); 4949566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(xx,&ax)); 4959566063dSJacob Faibussowitsch PetscCall((*mdn->A->ops->multadd)(mdn->A,mdn->lvec,yy,zz)); 4963a40ed3dSBarry Smith PetscFunctionReturn(0); 4978965ea79SLois Curfman McInnes } 4988965ea79SLois Curfman McInnes 499dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIDense(Mat A,Vec xx,Vec yy) 500096963f5SLois Curfman McInnes { 501096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 502637a0070SStefano Zampini const PetscScalar *ax; 503637a0070SStefano Zampini PetscScalar *ay; 504d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 505096963f5SLois Curfman McInnes 5063a40ed3dSBarry Smith PetscFunctionBegin; 5076f08ad05SPierre Jolivet if (!a->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); 5089566063dSJacob Faibussowitsch PetscCall(VecSet(yy,0.0)); 5099566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A,xx,a->lvec)); 5109566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(a->lvec,&ax,&axmtype)); 5119566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(yy,&ay,&aymtype)); 5129566063dSJacob Faibussowitsch PetscCall(PetscSFReduceWithMemTypeBegin(a->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPIU_SUM)); 5139566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM)); 5149566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(a->lvec,&ax)); 5159566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(yy,&ay)); 5163a40ed3dSBarry Smith PetscFunctionReturn(0); 517096963f5SLois Curfman McInnes } 518096963f5SLois Curfman McInnes 519dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz) 520096963f5SLois Curfman McInnes { 521096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 522637a0070SStefano Zampini const PetscScalar *ax; 523637a0070SStefano Zampini PetscScalar *ay; 524d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 525096963f5SLois Curfman McInnes 5263a40ed3dSBarry Smith PetscFunctionBegin; 5276f08ad05SPierre Jolivet if (!a->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); 5289566063dSJacob Faibussowitsch PetscCall(VecCopy(yy,zz)); 5299566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A,xx,a->lvec)); 5309566063dSJacob Faibussowitsch PetscCall(VecGetArrayReadAndMemType(a->lvec,&ax,&axmtype)); 5319566063dSJacob Faibussowitsch PetscCall(VecGetArrayAndMemType(zz,&ay,&aymtype)); 5329566063dSJacob Faibussowitsch PetscCall(PetscSFReduceWithMemTypeBegin(a->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPIU_SUM)); 5339566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM)); 5349566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayReadAndMemType(a->lvec,&ax)); 5359566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayAndMemType(zz,&ay)); 5363a40ed3dSBarry Smith PetscFunctionReturn(0); 537096963f5SLois Curfman McInnes } 538096963f5SLois Curfman McInnes 539dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIDense(Mat A,Vec v) 5408965ea79SLois Curfman McInnes { 54139ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 542637a0070SStefano Zampini PetscInt lda,len,i,n,m = A->rmap->n,radd; 54387828ca2SBarry Smith PetscScalar *x,zero = 0.0; 544637a0070SStefano Zampini const PetscScalar *av; 545ed3cc1f0SBarry Smith 5463a40ed3dSBarry Smith PetscFunctionBegin; 5479566063dSJacob Faibussowitsch PetscCall(VecSet(v,zero)); 5489566063dSJacob Faibussowitsch PetscCall(VecGetArray(v,&x)); 5499566063dSJacob Faibussowitsch PetscCall(VecGetSize(v,&n)); 55008401ef6SPierre Jolivet PetscCheck(n == A->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec"); 551d0f46423SBarry Smith len = PetscMin(a->A->rmap->n,a->A->cmap->n); 552d0f46423SBarry Smith radd = A->rmap->rstart*m; 5539566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A,&av)); 5549566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 55544cd7ae7SLois Curfman McInnes for (i=0; i<len; i++) { 556637a0070SStefano Zampini x[i] = av[radd + i*lda + i]; 557096963f5SLois Curfman McInnes } 5589566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A,&av)); 5599566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(v,&x)); 5603a40ed3dSBarry Smith PetscFunctionReturn(0); 5618965ea79SLois Curfman McInnes } 5628965ea79SLois Curfman McInnes 563dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIDense(Mat mat) 5648965ea79SLois Curfman McInnes { 5653501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 566ed3cc1f0SBarry Smith 5673a40ed3dSBarry Smith PetscFunctionBegin; 568aa482453SBarry Smith #if defined(PETSC_USE_LOG) 569c0aa6a63SJacob Faibussowitsch PetscLogObjectState((PetscObject)mat,"Rows=%" PetscInt_FMT ", Cols=%" PetscInt_FMT,mat->rmap->N,mat->cmap->N); 5708965ea79SLois Curfman McInnes #endif 5719566063dSJacob Faibussowitsch PetscCall(MatStashDestroy_Private(&mat->stash)); 57228b400f6SJacob Faibussowitsch PetscCheck(!mdn->vecinuse,PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 57328b400f6SJacob Faibussowitsch PetscCheck(!mdn->matinuse,PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 5749566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mdn->A)); 5759566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mdn->lvec)); 5769566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&mdn->Mvctx)); 5779566063dSJacob Faibussowitsch PetscCall(VecDestroy(&mdn->cvec)); 5789566063dSJacob Faibussowitsch PetscCall(MatDestroy(&mdn->cmat)); 57901b82886SBarry Smith 5809566063dSJacob Faibussowitsch PetscCall(PetscFree(mat->data)); 5819566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)mat,NULL)); 5828baccfbdSHong Zhang 5839566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",NULL)); 5849566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseSetLDA_C",NULL)); 5859566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",NULL)); 5869566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",NULL)); 5879566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",NULL)); 5889566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",NULL)); 5899566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayWrite_C",NULL)); 5909566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayWrite_C",NULL)); 5919566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",NULL)); 5929566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",NULL)); 5939566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseReplaceArray_C",NULL)); 5949566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpiaij_mpidense_C",NULL)); 5959566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_mpiaij_C",NULL)); 5968baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 5979566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",NULL)); 5988baccfbdSHong Zhang #endif 599d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 6009566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_scalapack_C",NULL)); 601d24d4204SJose E. Roman #endif 6029566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",NULL)); 6039566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaij_mpidense_C",NULL)); 6049566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaij_C",NULL)); 6056718818eSStefano Zampini #if defined (PETSC_HAVE_CUDA) 6069566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaijcusparse_mpidense_C",NULL)); 6079566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaijcusparse_C",NULL)); 6086718818eSStefano Zampini #endif 6099566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",NULL)); 6109566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",NULL)); 6119566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",NULL)); 6129566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",NULL)); 6139566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",NULL)); 6149566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",NULL)); 6159566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",NULL)); 6169566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",NULL)); 6179566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetSubMatrix_C",NULL)); 6189566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreSubMatrix_C",NULL)); 619f8103e6bSStefano Zampini 620f8103e6bSStefano Zampini PetscCall(PetscObjectCompose((PetscObject)mat,"DiagonalBlock",NULL)); 6213a40ed3dSBarry Smith PetscFunctionReturn(0); 6228965ea79SLois Curfman McInnes } 62339ddd567SLois Curfman McInnes 62452c5f739Sprj- PETSC_INTERN PetscErrorCode MatView_SeqDense(Mat,PetscViewer); 62552c5f739Sprj- 6269804daf3SBarry Smith #include <petscdraw.h> 6276849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 6288965ea79SLois Curfman McInnes { 62939ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 630616b8fbbSStefano Zampini PetscMPIInt rank; 63119fd82e9SBarry Smith PetscViewerType vtype; 632ace3abfcSBarry Smith PetscBool iascii,isdraw; 633b0a32e0cSBarry Smith PetscViewer sviewer; 634f3ef73ceSBarry Smith PetscViewerFormat format; 6358965ea79SLois Curfman McInnes 6363a40ed3dSBarry Smith PetscFunctionBegin; 6379566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank)); 6389566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii)); 6399566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw)); 64032077d6dSBarry Smith if (iascii) { 6419566063dSJacob Faibussowitsch PetscCall(PetscViewerGetType(viewer,&vtype)); 6429566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer,&format)); 643456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 6444e220ebcSLois Curfman McInnes MatInfo info; 6459566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat,MAT_LOCAL,&info)); 6469566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 6479566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer," [%d] local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " mem %" PetscInt_FMT " \n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory)); 6489566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 6499566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 6506f08ad05SPierre Jolivet if (mdn->Mvctx) PetscCall(PetscSFView(mdn->Mvctx,viewer)); 6513a40ed3dSBarry Smith PetscFunctionReturn(0); 652fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 6533a40ed3dSBarry Smith PetscFunctionReturn(0); 6548965ea79SLois Curfman McInnes } 655f1af5d2fSBarry Smith } else if (isdraw) { 656b0a32e0cSBarry Smith PetscDraw draw; 657ace3abfcSBarry Smith PetscBool isnull; 658f1af5d2fSBarry Smith 6599566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer,0,&draw)); 6609566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw,&isnull)); 661f1af5d2fSBarry Smith if (isnull) PetscFunctionReturn(0); 662f1af5d2fSBarry Smith } 66377ed5343SBarry Smith 6647da1fb6eSBarry Smith { 6658965ea79SLois Curfman McInnes /* assemble the entire matrix onto first processor. */ 6668965ea79SLois Curfman McInnes Mat A; 667d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,m,row,i,nz; 668ba8c8a56SBarry Smith PetscInt *cols; 669ba8c8a56SBarry Smith PetscScalar *vals; 6708965ea79SLois Curfman McInnes 6719566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat),&A)); 672dd400576SPatrick Sanan if (rank == 0) { 6739566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A,M,N,M,N)); 6743a40ed3dSBarry Smith } else { 6759566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A,0,0,M,N)); 6768965ea79SLois Curfman McInnes } 6777adad957SLisandro Dalcin /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */ 6789566063dSJacob Faibussowitsch PetscCall(MatSetType(A,MATMPIDENSE)); 6799566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(A,NULL)); 6809566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)A)); 6818965ea79SLois Curfman McInnes 68239ddd567SLois Curfman McInnes /* Copy the matrix ... This isn't the most efficient means, 68339ddd567SLois Curfman McInnes but it's quick for now */ 68451022da4SBarry Smith A->insertmode = INSERT_VALUES; 6852205254eSKarl Rupp 6862205254eSKarl Rupp row = mat->rmap->rstart; 6872205254eSKarl Rupp m = mdn->A->rmap->n; 6888965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 6899566063dSJacob Faibussowitsch PetscCall(MatGetRow_MPIDense(mat,row,&nz,&cols,&vals)); 6909566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIDense(A,1,&row,nz,cols,vals,INSERT_VALUES)); 6919566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_MPIDense(mat,row,&nz,&cols,&vals)); 69239ddd567SLois Curfman McInnes row++; 6938965ea79SLois Curfman McInnes } 6948965ea79SLois Curfman McInnes 6959566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY)); 6969566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY)); 6979566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer)); 698dd400576SPatrick Sanan if (rank == 0) { 6999566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)((Mat_MPIDense*)(A->data))->A,((PetscObject)mat)->name)); 7009566063dSJacob Faibussowitsch PetscCall(MatView_SeqDense(((Mat_MPIDense*)(A->data))->A,sviewer)); 7018965ea79SLois Curfman McInnes } 7029566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer)); 7039566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 7049566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 7058965ea79SLois Curfman McInnes } 7063a40ed3dSBarry Smith PetscFunctionReturn(0); 7078965ea79SLois Curfman McInnes } 7088965ea79SLois Curfman McInnes 709dfbe8321SBarry Smith PetscErrorCode MatView_MPIDense(Mat mat,PetscViewer viewer) 7108965ea79SLois Curfman McInnes { 711ace3abfcSBarry Smith PetscBool iascii,isbinary,isdraw,issocket; 7128965ea79SLois Curfman McInnes 713433994e6SBarry Smith PetscFunctionBegin; 7149566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii)); 7159566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary)); 7169566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket)); 7179566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw)); 7180f5bd95cSBarry Smith 71932077d6dSBarry Smith if (iascii || issocket || isdraw) { 7209566063dSJacob Faibussowitsch PetscCall(MatView_MPIDense_ASCIIorDraworSocket(mat,viewer)); 7210f5bd95cSBarry Smith } else if (isbinary) { 7229566063dSJacob Faibussowitsch PetscCall(MatView_Dense_Binary(mat,viewer)); 72311aeaf0aSBarry Smith } 7243a40ed3dSBarry Smith PetscFunctionReturn(0); 7258965ea79SLois Curfman McInnes } 7268965ea79SLois Curfman McInnes 727dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info) 7288965ea79SLois Curfman McInnes { 7293501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 7303501a2bdSLois Curfman McInnes Mat mdn = mat->A; 7313966268fSBarry Smith PetscLogDouble isend[5],irecv[5]; 7328965ea79SLois Curfman McInnes 7333a40ed3dSBarry Smith PetscFunctionBegin; 7344e220ebcSLois Curfman McInnes info->block_size = 1.0; 7352205254eSKarl Rupp 7369566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mdn,MAT_LOCAL,info)); 7372205254eSKarl Rupp 7384e220ebcSLois Curfman McInnes isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 7394e220ebcSLois Curfman McInnes isend[3] = info->memory; isend[4] = info->mallocs; 7408965ea79SLois Curfman McInnes if (flag == MAT_LOCAL) { 7414e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 7424e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 7434e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 7444e220ebcSLois Curfman McInnes info->memory = isend[3]; 7454e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 7468965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 7471c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_MAX,PetscObjectComm((PetscObject)A))); 7482205254eSKarl Rupp 7494e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7504e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7514e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7524e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7534e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7548965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 7551c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_SUM,PetscObjectComm((PetscObject)A))); 7562205254eSKarl Rupp 7574e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7584e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7594e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7604e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7614e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7628965ea79SLois Curfman McInnes } 7634e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 7644e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 7654e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 7663a40ed3dSBarry Smith PetscFunctionReturn(0); 7678965ea79SLois Curfman McInnes } 7688965ea79SLois Curfman McInnes 769ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIDense(Mat A,MatOption op,PetscBool flg) 7708965ea79SLois Curfman McInnes { 77139ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 7728965ea79SLois Curfman McInnes 7733a40ed3dSBarry Smith PetscFunctionBegin; 77412c028f9SKris Buschelman switch (op) { 775512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 77612c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 77712c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 77843674050SBarry Smith MatCheckPreallocated(A,1); 7799566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A,op,flg)); 78012c028f9SKris Buschelman break; 78112c028f9SKris Buschelman case MAT_ROW_ORIENTED: 78243674050SBarry Smith MatCheckPreallocated(A,1); 7834e0d8c25SBarry Smith a->roworiented = flg; 7849566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A,op,flg)); 78512c028f9SKris Buschelman break; 7868c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 78713fa8e87SLisandro Dalcin case MAT_KEEP_NONZERO_PATTERN: 78812c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 789071fcb05SBarry Smith case MAT_SORTED_FULL: 7909566063dSJacob Faibussowitsch PetscCall(PetscInfo(A,"Option %s ignored\n",MatOptions[op])); 79112c028f9SKris Buschelman break; 79212c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 7934e0d8c25SBarry Smith a->donotstash = flg; 79412c028f9SKris Buschelman break; 79577e54ba9SKris Buschelman case MAT_SYMMETRIC: 79677e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 7979a4540c5SBarry Smith case MAT_HERMITIAN: 7989a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 799600fe468SBarry Smith case MAT_IGNORE_LOWER_TRIANGULAR: 8005d7aebe8SStefano Zampini case MAT_IGNORE_ZERO_ENTRIES: 8019566063dSJacob Faibussowitsch PetscCall(PetscInfo(A,"Option %s ignored\n",MatOptions[op])); 80277e54ba9SKris Buschelman break; 80312c028f9SKris Buschelman default: 80498921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %s",MatOptions[op]); 8053a40ed3dSBarry Smith } 8063a40ed3dSBarry Smith PetscFunctionReturn(0); 8078965ea79SLois Curfman McInnes } 8088965ea79SLois Curfman McInnes 809dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIDense(Mat A,Vec ll,Vec rr) 8105b2fa520SLois Curfman McInnes { 8115b2fa520SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 812637a0070SStefano Zampini const PetscScalar *l; 813637a0070SStefano Zampini PetscScalar x,*v,*vv,*r; 814637a0070SStefano Zampini PetscInt i,j,s2a,s3a,s2,s3,m=mdn->A->rmap->n,n=mdn->A->cmap->n,lda; 8155b2fa520SLois Curfman McInnes 8165b2fa520SLois Curfman McInnes PetscFunctionBegin; 8179566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(mdn->A,&vv)); 8189566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(mdn->A,&lda)); 8199566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A,&s2,&s3)); 8205b2fa520SLois Curfman McInnes if (ll) { 8219566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll,&s2a)); 82208401ef6SPierre Jolivet PetscCheck(s2a == s2,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vector non-conforming local size, %" PetscInt_FMT " != %" PetscInt_FMT, s2a, s2); 8239566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(ll,&l)); 8245b2fa520SLois Curfman McInnes for (i=0; i<m; i++) { 8255b2fa520SLois Curfman McInnes x = l[i]; 826637a0070SStefano Zampini v = vv + i; 827637a0070SStefano Zampini for (j=0; j<n; j++) { (*v) *= x; v+= lda;} 8285b2fa520SLois Curfman McInnes } 8299566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(ll,&l)); 8309566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(1.0*n*m)); 8315b2fa520SLois Curfman McInnes } 8325b2fa520SLois Curfman McInnes if (rr) { 833637a0070SStefano Zampini const PetscScalar *ar; 834637a0070SStefano Zampini 8359566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr,&s3a)); 83608401ef6SPierre Jolivet PetscCheck(s3a == s3,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vec non-conforming local size, %" PetscInt_FMT " != %" PetscInt_FMT ".", s3a, s3); 8379566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(rr,&ar)); 8386f08ad05SPierre Jolivet if (!mdn->Mvctx) PetscCall(MatSetUpMultiply_MPIDense(A)); 8399566063dSJacob Faibussowitsch PetscCall(VecGetArray(mdn->lvec,&r)); 8409566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(mdn->Mvctx,MPIU_SCALAR,ar,r,MPI_REPLACE)); 8419566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ar,r,MPI_REPLACE)); 8429566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(rr,&ar)); 8435b2fa520SLois Curfman McInnes for (i=0; i<n; i++) { 8445b2fa520SLois Curfman McInnes x = r[i]; 845637a0070SStefano Zampini v = vv + i*lda; 8462205254eSKarl Rupp for (j=0; j<m; j++) (*v++) *= x; 8475b2fa520SLois Curfman McInnes } 8489566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(mdn->lvec,&r)); 8499566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(1.0*n*m)); 8505b2fa520SLois Curfman McInnes } 8519566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(mdn->A,&vv)); 8525b2fa520SLois Curfman McInnes PetscFunctionReturn(0); 8535b2fa520SLois Curfman McInnes } 8545b2fa520SLois Curfman McInnes 855dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIDense(Mat A,NormType type,PetscReal *nrm) 856096963f5SLois Curfman McInnes { 8573501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 85813f74950SBarry Smith PetscInt i,j; 859616b8fbbSStefano Zampini PetscMPIInt size; 860329f5518SBarry Smith PetscReal sum = 0.0; 861637a0070SStefano Zampini const PetscScalar *av,*v; 8623501a2bdSLois Curfman McInnes 8633a40ed3dSBarry Smith PetscFunctionBegin; 8649566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(mdn->A,&av)); 865637a0070SStefano Zampini v = av; 8669566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A),&size)); 867616b8fbbSStefano Zampini if (size == 1) { 8689566063dSJacob Faibussowitsch PetscCall(MatNorm(mdn->A,type,nrm)); 8693501a2bdSLois Curfman McInnes } else { 8703501a2bdSLois Curfman McInnes if (type == NORM_FROBENIUS) { 871d0f46423SBarry Smith for (i=0; i<mdn->A->cmap->n*mdn->A->rmap->n; i++) { 872329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 8733501a2bdSLois Curfman McInnes } 8741c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A))); 8758f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 8769566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0*mdn->A->cmap->n*mdn->A->rmap->n)); 8773a40ed3dSBarry Smith } else if (type == NORM_1) { 878329f5518SBarry Smith PetscReal *tmp,*tmp2; 8799566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(A->cmap->N,&tmp,A->cmap->N,&tmp2)); 880064f8208SBarry Smith *nrm = 0.0; 881637a0070SStefano Zampini v = av; 882d0f46423SBarry Smith for (j=0; j<mdn->A->cmap->n; j++) { 883d0f46423SBarry Smith for (i=0; i<mdn->A->rmap->n; i++) { 88467e560aaSBarry Smith tmp[j] += PetscAbsScalar(*v); v++; 8853501a2bdSLois Curfman McInnes } 8863501a2bdSLois Curfman McInnes } 8871c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(tmp,tmp2,A->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A))); 888d0f46423SBarry Smith for (j=0; j<A->cmap->N; j++) { 889064f8208SBarry Smith if (tmp2[j] > *nrm) *nrm = tmp2[j]; 8903501a2bdSLois Curfman McInnes } 8919566063dSJacob Faibussowitsch PetscCall(PetscFree2(tmp,tmp2)); 8929566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(A->cmap->n*A->rmap->n)); 8933a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 894329f5518SBarry Smith PetscReal ntemp; 8959566063dSJacob Faibussowitsch PetscCall(MatNorm(mdn->A,type,&ntemp)); 8961c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&ntemp,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A))); 897ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"No support for two norm"); 8983501a2bdSLois Curfman McInnes } 8999566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(mdn->A,&av)); 9003a40ed3dSBarry Smith PetscFunctionReturn(0); 9013501a2bdSLois Curfman McInnes } 9023501a2bdSLois Curfman McInnes 903fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIDense(Mat A,MatReuse reuse,Mat *matout) 9043501a2bdSLois Curfman McInnes { 9053501a2bdSLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 9063501a2bdSLois Curfman McInnes Mat B; 907d0f46423SBarry Smith PetscInt M = A->rmap->N,N = A->cmap->N,m,n,*rwork,rstart = A->rmap->rstart; 908637a0070SStefano Zampini PetscInt j,i,lda; 90987828ca2SBarry Smith PetscScalar *v; 9103501a2bdSLois Curfman McInnes 9113a40ed3dSBarry Smith PetscFunctionBegin; 912cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 9139566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&B)); 9149566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B,A->cmap->n,A->rmap->n,N,M)); 9159566063dSJacob Faibussowitsch PetscCall(MatSetType(B,((PetscObject)A)->type_name)); 9169566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(B,NULL)); 917637a0070SStefano Zampini } else B = *matout; 9183501a2bdSLois Curfman McInnes 919637a0070SStefano Zampini m = a->A->rmap->n; n = a->A->cmap->n; 9209566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A,(const PetscScalar**)&v)); 9219566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 9229566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m,&rwork)); 9233501a2bdSLois Curfman McInnes for (i=0; i<m; i++) rwork[i] = rstart + i; 9241acff37aSSatish Balay for (j=0; j<n; j++) { 9259566063dSJacob Faibussowitsch PetscCall(MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES)); 926637a0070SStefano Zampini v += lda; 9273501a2bdSLois Curfman McInnes } 9289566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A,(const PetscScalar**)&v)); 9299566063dSJacob Faibussowitsch PetscCall(PetscFree(rwork)); 9309566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY)); 9319566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY)); 932cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) { 9333501a2bdSLois Curfman McInnes *matout = B; 9343501a2bdSLois Curfman McInnes } else { 9359566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(A,&B)); 9363501a2bdSLois Curfman McInnes } 9373a40ed3dSBarry Smith PetscFunctionReturn(0); 938096963f5SLois Curfman McInnes } 939096963f5SLois Curfman McInnes 9406849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat*); 94152c5f739Sprj- PETSC_INTERN PetscErrorCode MatScale_MPIDense(Mat,PetscScalar); 9428965ea79SLois Curfman McInnes 9434994cf47SJed Brown PetscErrorCode MatSetUp_MPIDense(Mat A) 944273d9f13SBarry Smith { 945273d9f13SBarry Smith PetscFunctionBegin; 9469566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->rmap)); 9479566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->cmap)); 94818992e5dSStefano Zampini if (!A->preallocated) { 9499566063dSJacob Faibussowitsch PetscCall(MatMPIDenseSetPreallocation(A,NULL)); 95018992e5dSStefano Zampini } 951273d9f13SBarry Smith PetscFunctionReturn(0); 952273d9f13SBarry Smith } 953273d9f13SBarry Smith 954488007eeSBarry Smith PetscErrorCode MatAXPY_MPIDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str) 955488007eeSBarry Smith { 956488007eeSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)Y->data, *B = (Mat_MPIDense*)X->data; 957488007eeSBarry Smith 958488007eeSBarry Smith PetscFunctionBegin; 9599566063dSJacob Faibussowitsch PetscCall(MatAXPY(A->A,alpha,B->A,str)); 960488007eeSBarry Smith PetscFunctionReturn(0); 961488007eeSBarry Smith } 962488007eeSBarry Smith 9637087cfbeSBarry Smith PetscErrorCode MatConjugate_MPIDense(Mat mat) 964ba337c44SJed Brown { 965ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)mat->data; 966ba337c44SJed Brown 967ba337c44SJed Brown PetscFunctionBegin; 9689566063dSJacob Faibussowitsch PetscCall(MatConjugate(a->A)); 969ba337c44SJed Brown PetscFunctionReturn(0); 970ba337c44SJed Brown } 971ba337c44SJed Brown 972ba337c44SJed Brown PetscErrorCode MatRealPart_MPIDense(Mat A) 973ba337c44SJed Brown { 974ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 975ba337c44SJed Brown 976ba337c44SJed Brown PetscFunctionBegin; 9779566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 978ba337c44SJed Brown PetscFunctionReturn(0); 979ba337c44SJed Brown } 980ba337c44SJed Brown 981ba337c44SJed Brown PetscErrorCode MatImaginaryPart_MPIDense(Mat A) 982ba337c44SJed Brown { 983ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 984ba337c44SJed Brown 985ba337c44SJed Brown PetscFunctionBegin; 9869566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 987ba337c44SJed Brown PetscFunctionReturn(0); 988ba337c44SJed Brown } 989ba337c44SJed Brown 99049a6ff4bSBarry Smith static PetscErrorCode MatGetColumnVector_MPIDense(Mat A,Vec v,PetscInt col) 99149a6ff4bSBarry Smith { 992637a0070SStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*) A->data; 99349a6ff4bSBarry Smith 99449a6ff4bSBarry Smith PetscFunctionBegin; 99528b400f6SJacob Faibussowitsch PetscCheck(a->A,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Missing local matrix"); 99628b400f6SJacob Faibussowitsch PetscCheck(a->A->ops->getcolumnvector,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Missing get column operation"); 9979566063dSJacob Faibussowitsch PetscCall((*a->A->ops->getcolumnvector)(a->A,v,col)); 99849a6ff4bSBarry Smith PetscFunctionReturn(0); 99949a6ff4bSBarry Smith } 100049a6ff4bSBarry Smith 1001857cbf51SRichard Tran Mills PETSC_INTERN PetscErrorCode MatGetColumnReductions_SeqDense(Mat,PetscInt,PetscReal*); 100252c5f739Sprj- 1003857cbf51SRichard Tran Mills PetscErrorCode MatGetColumnReductions_MPIDense(Mat A,PetscInt type,PetscReal *reductions) 10040716a85fSBarry Smith { 1005a873a8cdSSam Reynolds PetscInt i,m,n; 10060716a85fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*) A->data; 10070716a85fSBarry Smith PetscReal *work; 10080716a85fSBarry Smith 10090716a85fSBarry Smith PetscFunctionBegin; 10109566063dSJacob Faibussowitsch PetscCall(MatGetSize(A,&m,&n)); 10119566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n,&work)); 1012857cbf51SRichard Tran Mills if (type == REDUCTION_MEAN_REALPART) { 10139566063dSJacob Faibussowitsch PetscCall(MatGetColumnReductions_SeqDense(a->A,(PetscInt)REDUCTION_SUM_REALPART,work)); 1014857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_IMAGINARYPART) { 10159566063dSJacob Faibussowitsch PetscCall(MatGetColumnReductions_SeqDense(a->A,(PetscInt)REDUCTION_SUM_IMAGINARYPART,work)); 1016a873a8cdSSam Reynolds } else { 10179566063dSJacob Faibussowitsch PetscCall(MatGetColumnReductions_SeqDense(a->A,type,work)); 1018a873a8cdSSam Reynolds } 1019857cbf51SRichard Tran Mills if (type == NORM_2) { 10200716a85fSBarry Smith for (i=0; i<n; i++) work[i] *= work[i]; 10210716a85fSBarry Smith } 1022857cbf51SRichard Tran Mills if (type == NORM_INFINITY) { 10231c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work,reductions,n,MPIU_REAL,MPIU_MAX,A->hdr.comm)); 10240716a85fSBarry Smith } else { 10251c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work,reductions,n,MPIU_REAL,MPIU_SUM,A->hdr.comm)); 10260716a85fSBarry Smith } 10279566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 1028857cbf51SRichard Tran Mills if (type == NORM_2) { 1029a873a8cdSSam Reynolds for (i=0; i<n; i++) reductions[i] = PetscSqrtReal(reductions[i]); 1030857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 1031a873a8cdSSam Reynolds for (i=0; i<n; i++) reductions[i] /= m; 10320716a85fSBarry Smith } 10330716a85fSBarry Smith PetscFunctionReturn(0); 10340716a85fSBarry Smith } 10350716a85fSBarry Smith 1036637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1037126e4e93SJose E. Roman PetscErrorCode MatShift_MPIDenseCUDA(Mat A,PetscScalar alpha) 1038126e4e93SJose E. Roman { 1039126e4e93SJose E. Roman PetscScalar *da; 1040126e4e93SJose E. Roman PetscInt lda; 1041126e4e93SJose E. Roman 1042126e4e93SJose E. Roman PetscFunctionBegin; 1043126e4e93SJose E. Roman PetscCall(MatDenseCUDAGetArray(A,&da)); 1044126e4e93SJose E. Roman PetscCall(MatDenseGetLDA(A,&lda)); 1045126e4e93SJose E. Roman PetscCall(PetscInfo(A,"Performing Shift on backend\n")); 1046126e4e93SJose E. Roman PetscCall(MatShift_DenseCUDA_Private(da,alpha,lda,A->rmap->rstart,A->rmap->rend,A->cmap->N)); 1047126e4e93SJose E. Roman PetscCall(MatDenseCUDARestoreArray(A,&da)); 1048126e4e93SJose E. Roman PetscFunctionReturn(0); 1049126e4e93SJose E. Roman } 1050126e4e93SJose E. Roman 10516947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVec_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10526947451fSStefano Zampini { 10536947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10546947451fSStefano Zampini PetscInt lda; 10556947451fSStefano Zampini 10566947451fSStefano Zampini PetscFunctionBegin; 105728b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 105828b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 10596947451fSStefano Zampini if (!a->cvec) { 10609566063dSJacob Faibussowitsch PetscCall(VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 10619566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec)); 10626947451fSStefano Zampini } 10636947451fSStefano Zampini a->vecinuse = col + 1; 10649566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 10659566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArray(a->A,(PetscScalar**)&a->ptrinuse)); 10669566063dSJacob Faibussowitsch PetscCall(VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 10676947451fSStefano Zampini *v = a->cvec; 10686947451fSStefano Zampini PetscFunctionReturn(0); 10696947451fSStefano Zampini } 10706947451fSStefano Zampini 10716947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVec_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10726947451fSStefano Zampini { 10736947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10746947451fSStefano Zampini 10756947451fSStefano Zampini PetscFunctionBegin; 107628b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 107728b400f6SJacob Faibussowitsch PetscCheck(a->cvec,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector"); 10786947451fSStefano Zampini a->vecinuse = 0; 10799566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArray(a->A,(PetscScalar**)&a->ptrinuse)); 10809566063dSJacob Faibussowitsch PetscCall(VecCUDAResetArray(a->cvec)); 10816947451fSStefano Zampini *v = NULL; 10826947451fSStefano Zampini PetscFunctionReturn(0); 10836947451fSStefano Zampini } 10846947451fSStefano Zampini 10856947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecRead_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10866947451fSStefano Zampini { 10876947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10886947451fSStefano Zampini PetscInt lda; 10896947451fSStefano Zampini 10906947451fSStefano Zampini PetscFunctionBegin; 109128b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 109228b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 10936947451fSStefano Zampini if (!a->cvec) { 10949566063dSJacob Faibussowitsch PetscCall(VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 10959566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec)); 10966947451fSStefano Zampini } 10976947451fSStefano Zampini a->vecinuse = col + 1; 10989566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 10999566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArrayRead(a->A,&a->ptrinuse)); 11009566063dSJacob Faibussowitsch PetscCall(VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 11019566063dSJacob Faibussowitsch PetscCall(VecLockReadPush(a->cvec)); 11026947451fSStefano Zampini *v = a->cvec; 11036947451fSStefano Zampini PetscFunctionReturn(0); 11046947451fSStefano Zampini } 11056947451fSStefano Zampini 11066947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecRead_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 11076947451fSStefano Zampini { 11086947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 11096947451fSStefano Zampini 11106947451fSStefano Zampini PetscFunctionBegin; 111128b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 111228b400f6SJacob Faibussowitsch PetscCheck(a->cvec,PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 11136947451fSStefano Zampini a->vecinuse = 0; 11149566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArrayRead(a->A,&a->ptrinuse)); 11159566063dSJacob Faibussowitsch PetscCall(VecLockReadPop(a->cvec)); 11169566063dSJacob Faibussowitsch PetscCall(VecCUDAResetArray(a->cvec)); 11176947451fSStefano Zampini *v = NULL; 11186947451fSStefano Zampini PetscFunctionReturn(0); 11196947451fSStefano Zampini } 11206947451fSStefano Zampini 11216947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecWrite_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 11226947451fSStefano Zampini { 11236947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 11246947451fSStefano Zampini PetscInt lda; 11256947451fSStefano Zampini 11266947451fSStefano Zampini PetscFunctionBegin; 112728b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 112828b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 11296947451fSStefano Zampini if (!a->cvec) { 11309566063dSJacob Faibussowitsch PetscCall(VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 11319566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec)); 11326947451fSStefano Zampini } 11336947451fSStefano Zampini a->vecinuse = col + 1; 11349566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 11359566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArrayWrite(a->A,(PetscScalar**)&a->ptrinuse)); 11369566063dSJacob Faibussowitsch PetscCall(VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 11376947451fSStefano Zampini *v = a->cvec; 11386947451fSStefano Zampini PetscFunctionReturn(0); 11396947451fSStefano Zampini } 11406947451fSStefano Zampini 11416947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 11426947451fSStefano Zampini { 11436947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 11446947451fSStefano Zampini 11456947451fSStefano Zampini PetscFunctionBegin; 114628b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 114728b400f6SJacob Faibussowitsch PetscCheck(a->cvec,PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 11486947451fSStefano Zampini a->vecinuse = 0; 11499566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArrayWrite(a->A,(PetscScalar**)&a->ptrinuse)); 11509566063dSJacob Faibussowitsch PetscCall(VecCUDAResetArray(a->cvec)); 11516947451fSStefano Zampini *v = NULL; 11526947451fSStefano Zampini PetscFunctionReturn(0); 11536947451fSStefano Zampini } 11546947451fSStefano Zampini 1155637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAPlaceArray_MPIDenseCUDA(Mat A, const PetscScalar *a) 1156637a0070SStefano Zampini { 1157637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1158637a0070SStefano Zampini 1159637a0070SStefano Zampini PetscFunctionBegin; 116028b400f6SJacob Faibussowitsch PetscCheck(!l->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 116128b400f6SJacob Faibussowitsch PetscCheck(!l->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 11629566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAPlaceArray(l->A,a)); 1163637a0070SStefano Zampini PetscFunctionReturn(0); 1164637a0070SStefano Zampini } 1165637a0070SStefano Zampini 1166637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAResetArray_MPIDenseCUDA(Mat A) 1167637a0070SStefano Zampini { 1168637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1169637a0070SStefano Zampini 1170637a0070SStefano Zampini PetscFunctionBegin; 117128b400f6SJacob Faibussowitsch PetscCheck(!l->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 117228b400f6SJacob Faibussowitsch PetscCheck(!l->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 11739566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAResetArray(l->A)); 1174637a0070SStefano Zampini PetscFunctionReturn(0); 1175637a0070SStefano Zampini } 1176637a0070SStefano Zampini 1177d5ea218eSStefano Zampini static PetscErrorCode MatDenseCUDAReplaceArray_MPIDenseCUDA(Mat A, const PetscScalar *a) 1178d5ea218eSStefano Zampini { 1179d5ea218eSStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1180d5ea218eSStefano Zampini 1181d5ea218eSStefano Zampini PetscFunctionBegin; 118228b400f6SJacob Faibussowitsch PetscCheck(!l->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 118328b400f6SJacob Faibussowitsch PetscCheck(!l->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 11849566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAReplaceArray(l->A,a)); 1185d5ea218eSStefano Zampini PetscFunctionReturn(0); 1186d5ea218eSStefano Zampini } 1187d5ea218eSStefano Zampini 1188637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArrayWrite_MPIDenseCUDA(Mat A, PetscScalar **a) 1189637a0070SStefano Zampini { 1190637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1191637a0070SStefano Zampini 1192637a0070SStefano Zampini PetscFunctionBegin; 11939566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArrayWrite(l->A,a)); 1194637a0070SStefano Zampini PetscFunctionReturn(0); 1195637a0070SStefano Zampini } 1196637a0070SStefano Zampini 1197637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArrayWrite_MPIDenseCUDA(Mat A, PetscScalar **a) 1198637a0070SStefano Zampini { 1199637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1200637a0070SStefano Zampini 1201637a0070SStefano Zampini PetscFunctionBegin; 12029566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArrayWrite(l->A,a)); 1203637a0070SStefano Zampini PetscFunctionReturn(0); 1204637a0070SStefano Zampini } 1205637a0070SStefano Zampini 1206637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArrayRead_MPIDenseCUDA(Mat A, const PetscScalar **a) 1207637a0070SStefano Zampini { 1208637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1209637a0070SStefano Zampini 1210637a0070SStefano Zampini PetscFunctionBegin; 12119566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArrayRead(l->A,a)); 1212637a0070SStefano Zampini PetscFunctionReturn(0); 1213637a0070SStefano Zampini } 1214637a0070SStefano Zampini 1215637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArrayRead_MPIDenseCUDA(Mat A, const PetscScalar **a) 1216637a0070SStefano Zampini { 1217637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1218637a0070SStefano Zampini 1219637a0070SStefano Zampini PetscFunctionBegin; 12209566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArrayRead(l->A,a)); 1221637a0070SStefano Zampini PetscFunctionReturn(0); 1222637a0070SStefano Zampini } 1223637a0070SStefano Zampini 1224637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArray_MPIDenseCUDA(Mat A, PetscScalar **a) 1225637a0070SStefano Zampini { 1226637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1227637a0070SStefano Zampini 1228637a0070SStefano Zampini PetscFunctionBegin; 12299566063dSJacob Faibussowitsch PetscCall(MatDenseCUDAGetArray(l->A,a)); 1230637a0070SStefano Zampini PetscFunctionReturn(0); 1231637a0070SStefano Zampini } 1232637a0070SStefano Zampini 1233637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArray_MPIDenseCUDA(Mat A, PetscScalar **a) 1234637a0070SStefano Zampini { 1235637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1236637a0070SStefano Zampini 1237637a0070SStefano Zampini PetscFunctionBegin; 12389566063dSJacob Faibussowitsch PetscCall(MatDenseCUDARestoreArray(l->A,a)); 1239637a0070SStefano Zampini PetscFunctionReturn(0); 1240637a0070SStefano Zampini } 1241637a0070SStefano Zampini 12426947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecWrite_MPIDense(Mat,PetscInt,Vec*); 12436947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecRead_MPIDense(Mat,PetscInt,Vec*); 12446947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVec_MPIDense(Mat,PetscInt,Vec*); 12456947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDense(Mat,PetscInt,Vec*); 12466947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecRead_MPIDense(Mat,PetscInt,Vec*); 12476947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVec_MPIDense(Mat,PetscInt,Vec*); 12485ea7661aSPierre Jolivet static PetscErrorCode MatDenseRestoreSubMatrix_MPIDense(Mat,Mat*); 12496947451fSStefano Zampini 1250637a0070SStefano Zampini static PetscErrorCode MatBindToCPU_MPIDenseCUDA(Mat mat,PetscBool bind) 1251637a0070SStefano Zampini { 1252637a0070SStefano Zampini Mat_MPIDense *d = (Mat_MPIDense*)mat->data; 1253637a0070SStefano Zampini 1254637a0070SStefano Zampini PetscFunctionBegin; 125528b400f6SJacob Faibussowitsch PetscCheck(!d->vecinuse,PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 125628b400f6SJacob Faibussowitsch PetscCheck(!d->matinuse,PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1257637a0070SStefano Zampini if (d->A) { 12589566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(d->A,bind)); 1259637a0070SStefano Zampini } 1260637a0070SStefano Zampini mat->boundtocpu = bind; 12616947451fSStefano Zampini if (!bind) { 12626947451fSStefano Zampini PetscBool iscuda; 12636947451fSStefano Zampini 12649566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)d->cvec,VECMPICUDA,&iscuda)); 12656947451fSStefano Zampini if (!iscuda) { 12669566063dSJacob Faibussowitsch PetscCall(VecDestroy(&d->cvec)); 1267616b8fbbSStefano Zampini } 12689566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)d->cmat,MATMPIDENSECUDA,&iscuda)); 1269616b8fbbSStefano Zampini if (!iscuda) { 12709566063dSJacob Faibussowitsch PetscCall(MatDestroy(&d->cmat)); 12716947451fSStefano Zampini } 12729566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDenseCUDA)); 12739566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDenseCUDA)); 12749566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDenseCUDA)); 12759566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDenseCUDA)); 12769566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDenseCUDA)); 12779566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDenseCUDA)); 1278126e4e93SJose E. Roman mat->ops->shift = MatShift_MPIDenseCUDA; 12796947451fSStefano Zampini } else { 12809566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDense)); 12819566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDense)); 12829566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDense)); 12839566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDense)); 12849566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDense)); 12859566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDense)); 1286126e4e93SJose E. Roman mat->ops->shift = MatShift_MPIDense; 1287616b8fbbSStefano Zampini } 1288616b8fbbSStefano Zampini if (d->cmat) { 12899566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(d->cmat,bind)); 12906947451fSStefano Zampini } 1291637a0070SStefano Zampini PetscFunctionReturn(0); 1292637a0070SStefano Zampini } 1293637a0070SStefano Zampini 1294637a0070SStefano Zampini PetscErrorCode MatMPIDenseCUDASetPreallocation(Mat A, PetscScalar *d_data) 1295637a0070SStefano Zampini { 1296637a0070SStefano Zampini Mat_MPIDense *d = (Mat_MPIDense*)A->data; 1297637a0070SStefano Zampini PetscBool iscuda; 1298637a0070SStefano Zampini 1299637a0070SStefano Zampini PetscFunctionBegin; 1300d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 13019566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A,MATMPIDENSECUDA,&iscuda)); 1302637a0070SStefano Zampini if (!iscuda) PetscFunctionReturn(0); 13039566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->rmap)); 13049566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(A->cmap)); 1305637a0070SStefano Zampini if (!d->A) { 13069566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF,&d->A)); 13079566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)d->A)); 13089566063dSJacob Faibussowitsch PetscCall(MatSetSizes(d->A,A->rmap->n,A->cmap->N,A->rmap->n,A->cmap->N)); 1309637a0070SStefano Zampini } 13109566063dSJacob Faibussowitsch PetscCall(MatSetType(d->A,MATSEQDENSECUDA)); 13119566063dSJacob Faibussowitsch PetscCall(MatSeqDenseCUDASetPreallocation(d->A,d_data)); 1312637a0070SStefano Zampini A->preallocated = PETSC_TRUE; 13136f08ad05SPierre Jolivet A->assembled = PETSC_TRUE; 1314637a0070SStefano Zampini PetscFunctionReturn(0); 1315637a0070SStefano Zampini } 1316637a0070SStefano Zampini #endif 1317637a0070SStefano Zampini 131873a71a0fSBarry Smith static PetscErrorCode MatSetRandom_MPIDense(Mat x,PetscRandom rctx) 131973a71a0fSBarry Smith { 132073a71a0fSBarry Smith Mat_MPIDense *d = (Mat_MPIDense*)x->data; 132173a71a0fSBarry Smith 132273a71a0fSBarry Smith PetscFunctionBegin; 13239566063dSJacob Faibussowitsch PetscCall(MatSetRandom(d->A,rctx)); 132473a71a0fSBarry Smith PetscFunctionReturn(0); 132573a71a0fSBarry Smith } 132673a71a0fSBarry Smith 13273b49f96aSBarry Smith static PetscErrorCode MatMissingDiagonal_MPIDense(Mat A,PetscBool *missing,PetscInt *d) 13283b49f96aSBarry Smith { 13293b49f96aSBarry Smith PetscFunctionBegin; 13303b49f96aSBarry Smith *missing = PETSC_FALSE; 13313b49f96aSBarry Smith PetscFunctionReturn(0); 13323b49f96aSBarry Smith } 13333b49f96aSBarry Smith 13344222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat,Mat,PetscReal,Mat); 1335cc48ffa7SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat,Mat,Mat); 13366718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat,Mat,PetscReal,Mat); 1337a1f9a5e6SStefano Zampini static PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat,Mat,Mat); 13386718818eSStefano Zampini static PetscErrorCode MatEqual_MPIDense(Mat,Mat,PetscBool*); 13396718818eSStefano Zampini static PetscErrorCode MatLoad_MPIDense(Mat,PetscViewer); 1340cc48ffa7SToby Isaac 13418965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/ 134209dc0095SBarry Smith static struct _MatOps MatOps_Values = { MatSetValues_MPIDense, 134309dc0095SBarry Smith MatGetRow_MPIDense, 134409dc0095SBarry Smith MatRestoreRow_MPIDense, 134509dc0095SBarry Smith MatMult_MPIDense, 134697304618SKris Buschelman /* 4*/ MatMultAdd_MPIDense, 13477c922b88SBarry Smith MatMultTranspose_MPIDense, 13487c922b88SBarry Smith MatMultTransposeAdd_MPIDense, 1349f4259b30SLisandro Dalcin NULL, 1350f4259b30SLisandro Dalcin NULL, 1351f4259b30SLisandro Dalcin NULL, 1352f4259b30SLisandro Dalcin /* 10*/ NULL, 1353f4259b30SLisandro Dalcin NULL, 1354f4259b30SLisandro Dalcin NULL, 1355f4259b30SLisandro Dalcin NULL, 135609dc0095SBarry Smith MatTranspose_MPIDense, 135797304618SKris Buschelman /* 15*/ MatGetInfo_MPIDense, 13586e4ee0c6SHong Zhang MatEqual_MPIDense, 135909dc0095SBarry Smith MatGetDiagonal_MPIDense, 13605b2fa520SLois Curfman McInnes MatDiagonalScale_MPIDense, 136109dc0095SBarry Smith MatNorm_MPIDense, 136297304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPIDense, 136309dc0095SBarry Smith MatAssemblyEnd_MPIDense, 136409dc0095SBarry Smith MatSetOption_MPIDense, 136509dc0095SBarry Smith MatZeroEntries_MPIDense, 1366d519adbfSMatthew Knepley /* 24*/ MatZeroRows_MPIDense, 1367f4259b30SLisandro Dalcin NULL, 1368f4259b30SLisandro Dalcin NULL, 1369f4259b30SLisandro Dalcin NULL, 1370f4259b30SLisandro Dalcin NULL, 13714994cf47SJed Brown /* 29*/ MatSetUp_MPIDense, 1372f4259b30SLisandro Dalcin NULL, 1373f4259b30SLisandro Dalcin NULL, 1374c56a70eeSBarry Smith MatGetDiagonalBlock_MPIDense, 1375f4259b30SLisandro Dalcin NULL, 1376d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPIDense, 1377f4259b30SLisandro Dalcin NULL, 1378f4259b30SLisandro Dalcin NULL, 1379f4259b30SLisandro Dalcin NULL, 1380f4259b30SLisandro Dalcin NULL, 1381d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPIDense, 13827dae84e0SHong Zhang MatCreateSubMatrices_MPIDense, 1383f4259b30SLisandro Dalcin NULL, 138409dc0095SBarry Smith MatGetValues_MPIDense, 1385a76f77c3SStefano Zampini MatCopy_MPIDense, 1386f4259b30SLisandro Dalcin /* 44*/ NULL, 138709dc0095SBarry Smith MatScale_MPIDense, 13882f605a99SJose E. Roman MatShift_MPIDense, 1389f4259b30SLisandro Dalcin NULL, 1390f4259b30SLisandro Dalcin NULL, 139173a71a0fSBarry Smith /* 49*/ MatSetRandom_MPIDense, 1392f4259b30SLisandro Dalcin NULL, 1393f4259b30SLisandro Dalcin NULL, 1394f4259b30SLisandro Dalcin NULL, 1395f4259b30SLisandro Dalcin NULL, 1396f4259b30SLisandro Dalcin /* 54*/ NULL, 1397f4259b30SLisandro Dalcin NULL, 1398f4259b30SLisandro Dalcin NULL, 1399f4259b30SLisandro Dalcin NULL, 1400f4259b30SLisandro Dalcin NULL, 14017dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPIDense, 1402b9b97703SBarry Smith MatDestroy_MPIDense, 1403b9b97703SBarry Smith MatView_MPIDense, 1404f4259b30SLisandro Dalcin NULL, 1405f4259b30SLisandro Dalcin NULL, 1406f4259b30SLisandro Dalcin /* 64*/ NULL, 1407f4259b30SLisandro Dalcin NULL, 1408f4259b30SLisandro Dalcin NULL, 1409f4259b30SLisandro Dalcin NULL, 1410f4259b30SLisandro Dalcin NULL, 1411f4259b30SLisandro Dalcin /* 69*/ NULL, 1412f4259b30SLisandro Dalcin NULL, 1413f4259b30SLisandro Dalcin NULL, 1414f4259b30SLisandro Dalcin NULL, 1415f4259b30SLisandro Dalcin NULL, 1416f4259b30SLisandro Dalcin /* 74*/ NULL, 1417f4259b30SLisandro Dalcin NULL, 1418f4259b30SLisandro Dalcin NULL, 1419f4259b30SLisandro Dalcin NULL, 1420f4259b30SLisandro Dalcin NULL, 1421f4259b30SLisandro Dalcin /* 79*/ NULL, 1422f4259b30SLisandro Dalcin NULL, 1423f4259b30SLisandro Dalcin NULL, 1424f4259b30SLisandro Dalcin NULL, 14255bba2384SShri Abhyankar /* 83*/ MatLoad_MPIDense, 1426f4259b30SLisandro Dalcin NULL, 1427f4259b30SLisandro Dalcin NULL, 1428f4259b30SLisandro Dalcin NULL, 1429f4259b30SLisandro Dalcin NULL, 1430f4259b30SLisandro Dalcin NULL, 1431f4259b30SLisandro Dalcin /* 89*/ NULL, 1432f4259b30SLisandro Dalcin NULL, 1433f4259b30SLisandro Dalcin NULL, 1434f4259b30SLisandro Dalcin NULL, 1435f4259b30SLisandro Dalcin NULL, 1436f4259b30SLisandro Dalcin /* 94*/ NULL, 1437f4259b30SLisandro Dalcin NULL, 14386718818eSStefano Zampini MatMatTransposeMultSymbolic_MPIDense_MPIDense, 1439cc48ffa7SToby Isaac MatMatTransposeMultNumeric_MPIDense_MPIDense, 1440f4259b30SLisandro Dalcin NULL, 14414222ddf1SHong Zhang /* 99*/ MatProductSetFromOptions_MPIDense, 1442f4259b30SLisandro Dalcin NULL, 1443f4259b30SLisandro Dalcin NULL, 1444ba337c44SJed Brown MatConjugate_MPIDense, 1445f4259b30SLisandro Dalcin NULL, 1446f4259b30SLisandro Dalcin /*104*/ NULL, 1447ba337c44SJed Brown MatRealPart_MPIDense, 1448ba337c44SJed Brown MatImaginaryPart_MPIDense, 1449f4259b30SLisandro Dalcin NULL, 1450f4259b30SLisandro Dalcin NULL, 1451f4259b30SLisandro Dalcin /*109*/ NULL, 1452f4259b30SLisandro Dalcin NULL, 1453f4259b30SLisandro Dalcin NULL, 145449a6ff4bSBarry Smith MatGetColumnVector_MPIDense, 14553b49f96aSBarry Smith MatMissingDiagonal_MPIDense, 1456f4259b30SLisandro Dalcin /*114*/ NULL, 1457f4259b30SLisandro Dalcin NULL, 1458f4259b30SLisandro Dalcin NULL, 1459f4259b30SLisandro Dalcin NULL, 1460f4259b30SLisandro Dalcin NULL, 1461f4259b30SLisandro Dalcin /*119*/ NULL, 1462f4259b30SLisandro Dalcin NULL, 1463f4259b30SLisandro Dalcin NULL, 1464f4259b30SLisandro Dalcin NULL, 1465f4259b30SLisandro Dalcin NULL, 1466f4259b30SLisandro Dalcin /*124*/ NULL, 1467a873a8cdSSam Reynolds MatGetColumnReductions_MPIDense, 1468f4259b30SLisandro Dalcin NULL, 1469f4259b30SLisandro Dalcin NULL, 1470f4259b30SLisandro Dalcin NULL, 1471f4259b30SLisandro Dalcin /*129*/ NULL, 1472f4259b30SLisandro Dalcin NULL, 14736718818eSStefano Zampini MatTransposeMatMultSymbolic_MPIDense_MPIDense, 1474cb20be35SHong Zhang MatTransposeMatMultNumeric_MPIDense_MPIDense, 1475f4259b30SLisandro Dalcin NULL, 1476f4259b30SLisandro Dalcin /*134*/ NULL, 1477f4259b30SLisandro Dalcin NULL, 1478f4259b30SLisandro Dalcin NULL, 1479f4259b30SLisandro Dalcin NULL, 1480f4259b30SLisandro Dalcin NULL, 1481f4259b30SLisandro Dalcin /*139*/ NULL, 1482f4259b30SLisandro Dalcin NULL, 1483f4259b30SLisandro Dalcin NULL, 1484f4259b30SLisandro Dalcin NULL, 1485f4259b30SLisandro Dalcin NULL, 14864222ddf1SHong Zhang MatCreateMPIMatConcatenateSeqMat_MPIDense, 1487f4259b30SLisandro Dalcin /*145*/ NULL, 1488f4259b30SLisandro Dalcin NULL, 1489f4259b30SLisandro Dalcin NULL 1490ba337c44SJed Brown }; 14918965ea79SLois Curfman McInnes 14927087cfbeSBarry Smith PetscErrorCode MatMPIDenseSetPreallocation_MPIDense(Mat mat,PetscScalar *data) 1493a23d5eceSKris Buschelman { 1494637a0070SStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)mat->data; 1495637a0070SStefano Zampini PetscBool iscuda; 1496a23d5eceSKris Buschelman 1497a23d5eceSKris Buschelman PetscFunctionBegin; 149828b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 14999566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 15009566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 1501637a0070SStefano Zampini if (!a->A) { 15029566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF,&a->A)); 15039566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A)); 15049566063dSJacob Faibussowitsch PetscCall(MatSetSizes(a->A,mat->rmap->n,mat->cmap->N,mat->rmap->n,mat->cmap->N)); 1505637a0070SStefano Zampini } 15069566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)mat,MATMPIDENSECUDA,&iscuda)); 15079566063dSJacob Faibussowitsch PetscCall(MatSetType(a->A,iscuda ? MATSEQDENSECUDA : MATSEQDENSE)); 15089566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(a->A,data)); 1509637a0070SStefano Zampini mat->preallocated = PETSC_TRUE; 15106f08ad05SPierre Jolivet mat->assembled = PETSC_TRUE; 1511a23d5eceSKris Buschelman PetscFunctionReturn(0); 1512a23d5eceSKris Buschelman } 1513a23d5eceSKris Buschelman 15144e29119aSPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIDense(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 15154e29119aSPierre Jolivet { 15164e29119aSPierre Jolivet Mat B,C; 15174e29119aSPierre Jolivet 15184e29119aSPierre Jolivet PetscFunctionBegin; 15199566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(A,MAT_INITIAL_MATRIX,&C)); 15209566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqAIJ_SeqDense(C,MATSEQDENSE,MAT_INITIAL_MATRIX,&B)); 15219566063dSJacob Faibussowitsch PetscCall(MatDestroy(&C)); 15224e29119aSPierre Jolivet if (reuse == MAT_REUSE_MATRIX) { 15234e29119aSPierre Jolivet C = *newmat; 15244e29119aSPierre Jolivet } else C = NULL; 15259566063dSJacob Faibussowitsch PetscCall(MatCreateMPIMatConcatenateSeqMat(PetscObjectComm((PetscObject)A),B,A->cmap->n,!C?MAT_INITIAL_MATRIX:MAT_REUSE_MATRIX,&C)); 15269566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 15274e29119aSPierre Jolivet if (reuse == MAT_INPLACE_MATRIX) { 15289566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A,&C)); 15294e29119aSPierre Jolivet } else if (reuse == MAT_INITIAL_MATRIX) *newmat = C; 15304e29119aSPierre Jolivet PetscFunctionReturn(0); 15314e29119aSPierre Jolivet } 15324e29119aSPierre Jolivet 15334e29119aSPierre Jolivet PetscErrorCode MatConvert_MPIDense_MPIAIJ(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 15344e29119aSPierre Jolivet { 15354e29119aSPierre Jolivet Mat B,C; 15364e29119aSPierre Jolivet 15374e29119aSPierre Jolivet PetscFunctionBegin; 15389566063dSJacob Faibussowitsch PetscCall(MatDenseGetLocalMatrix(A,&C)); 15399566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqDense_SeqAIJ(C,MATSEQAIJ,MAT_INITIAL_MATRIX,&B)); 15404e29119aSPierre Jolivet if (reuse == MAT_REUSE_MATRIX) { 15414e29119aSPierre Jolivet C = *newmat; 15424e29119aSPierre Jolivet } else C = NULL; 15439566063dSJacob Faibussowitsch PetscCall(MatCreateMPIMatConcatenateSeqMat(PetscObjectComm((PetscObject)A),B,A->cmap->n,!C?MAT_INITIAL_MATRIX:MAT_REUSE_MATRIX,&C)); 15449566063dSJacob Faibussowitsch PetscCall(MatDestroy(&B)); 15454e29119aSPierre Jolivet if (reuse == MAT_INPLACE_MATRIX) { 15469566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A,&C)); 15474e29119aSPierre Jolivet } else if (reuse == MAT_INITIAL_MATRIX) *newmat = C; 15484e29119aSPierre Jolivet PetscFunctionReturn(0); 15494e29119aSPierre Jolivet } 15504e29119aSPierre Jolivet 155165b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 1552cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIDense_Elemental(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 15538baccfbdSHong Zhang { 15548ea901baSHong Zhang Mat mat_elemental; 155532d7a744SHong Zhang PetscScalar *v; 155632d7a744SHong Zhang PetscInt m=A->rmap->n,N=A->cmap->N,rstart=A->rmap->rstart,i,*rows,*cols; 15578ea901baSHong Zhang 15588baccfbdSHong Zhang PetscFunctionBegin; 1559378336b6SHong Zhang if (reuse == MAT_REUSE_MATRIX) { 1560378336b6SHong Zhang mat_elemental = *newmat; 15619566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(*newmat)); 1562378336b6SHong Zhang } else { 15639566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental)); 15649566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat_elemental,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N)); 15659566063dSJacob Faibussowitsch PetscCall(MatSetType(mat_elemental,MATELEMENTAL)); 15669566063dSJacob Faibussowitsch PetscCall(MatSetUp(mat_elemental)); 15679566063dSJacob Faibussowitsch PetscCall(MatSetOption(mat_elemental,MAT_ROW_ORIENTED,PETSC_FALSE)); 1568378336b6SHong Zhang } 1569378336b6SHong Zhang 15709566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m,&rows,N,&cols)); 157132d7a744SHong Zhang for (i=0; i<N; i++) cols[i] = i; 157232d7a744SHong Zhang for (i=0; i<m; i++) rows[i] = rstart + i; 15738ea901baSHong Zhang 1574637a0070SStefano Zampini /* PETSc-Elemental interface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */ 15759566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(A,&v)); 15769566063dSJacob Faibussowitsch PetscCall(MatSetValues(mat_elemental,m,rows,N,cols,v,ADD_VALUES)); 15779566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY)); 15789566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY)); 15799566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(A,&v)); 15809566063dSJacob Faibussowitsch PetscCall(PetscFree2(rows,cols)); 15818ea901baSHong Zhang 1582511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 15839566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A,&mat_elemental)); 15848ea901baSHong Zhang } else { 15858ea901baSHong Zhang *newmat = mat_elemental; 15868ea901baSHong Zhang } 15878baccfbdSHong Zhang PetscFunctionReturn(0); 15888baccfbdSHong Zhang } 158965b80a83SHong Zhang #endif 15908baccfbdSHong Zhang 1591af53bab2SHong Zhang static PetscErrorCode MatDenseGetColumn_MPIDense(Mat A,PetscInt col,PetscScalar **vals) 159286aefd0dSHong Zhang { 159386aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 159486aefd0dSHong Zhang 159586aefd0dSHong Zhang PetscFunctionBegin; 15969566063dSJacob Faibussowitsch PetscCall(MatDenseGetColumn(mat->A,col,vals)); 159786aefd0dSHong Zhang PetscFunctionReturn(0); 159886aefd0dSHong Zhang } 159986aefd0dSHong Zhang 1600af53bab2SHong Zhang static PetscErrorCode MatDenseRestoreColumn_MPIDense(Mat A,PetscScalar **vals) 160186aefd0dSHong Zhang { 160286aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 160386aefd0dSHong Zhang 160486aefd0dSHong Zhang PetscFunctionBegin; 16059566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreColumn(mat->A,vals)); 160686aefd0dSHong Zhang PetscFunctionReturn(0); 160786aefd0dSHong Zhang } 160886aefd0dSHong Zhang 160994e2cb23SJakub Kruzik PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIDense(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 161094e2cb23SJakub Kruzik { 161194e2cb23SJakub Kruzik Mat_MPIDense *mat; 161294e2cb23SJakub Kruzik PetscInt m,nloc,N; 161394e2cb23SJakub Kruzik 161494e2cb23SJakub Kruzik PetscFunctionBegin; 16159566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat,&m,&N)); 16169566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(inmat,NULL,&nloc)); 161794e2cb23SJakub Kruzik if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 161894e2cb23SJakub Kruzik PetscInt sum; 161994e2cb23SJakub Kruzik 162094e2cb23SJakub Kruzik if (n == PETSC_DECIDE) { 16219566063dSJacob Faibussowitsch PetscCall(PetscSplitOwnership(comm,&n,&N)); 162294e2cb23SJakub Kruzik } 162394e2cb23SJakub Kruzik /* Check sum(n) = N */ 16241c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm)); 162508401ef6SPierre Jolivet PetscCheck(sum == N,PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns %" PetscInt_FMT " != global columns %" PetscInt_FMT,sum,N); 162694e2cb23SJakub Kruzik 16279566063dSJacob Faibussowitsch PetscCall(MatCreateDense(comm,m,n,PETSC_DETERMINE,N,NULL,outmat)); 16289566063dSJacob Faibussowitsch PetscCall(MatSetOption(*outmat,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE)); 162994e2cb23SJakub Kruzik } 163094e2cb23SJakub Kruzik 163194e2cb23SJakub Kruzik /* numeric phase */ 163294e2cb23SJakub Kruzik mat = (Mat_MPIDense*)(*outmat)->data; 16339566063dSJacob Faibussowitsch PetscCall(MatCopy(inmat,mat->A,SAME_NONZERO_PATTERN)); 163494e2cb23SJakub Kruzik PetscFunctionReturn(0); 163594e2cb23SJakub Kruzik } 163694e2cb23SJakub Kruzik 1637637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1638637a0070SStefano Zampini PetscErrorCode MatConvert_MPIDenseCUDA_MPIDense(Mat M,MatType type,MatReuse reuse,Mat *newmat) 1639637a0070SStefano Zampini { 1640637a0070SStefano Zampini Mat B; 1641637a0070SStefano Zampini Mat_MPIDense *m; 1642637a0070SStefano Zampini 1643637a0070SStefano Zampini PetscFunctionBegin; 1644637a0070SStefano Zampini if (reuse == MAT_INITIAL_MATRIX) { 16459566063dSJacob Faibussowitsch PetscCall(MatDuplicate(M,MAT_COPY_VALUES,newmat)); 1646637a0070SStefano Zampini } else if (reuse == MAT_REUSE_MATRIX) { 16479566063dSJacob Faibussowitsch PetscCall(MatCopy(M,*newmat,SAME_NONZERO_PATTERN)); 1648637a0070SStefano Zampini } 1649637a0070SStefano Zampini 1650637a0070SStefano Zampini B = *newmat; 16519566063dSJacob Faibussowitsch PetscCall(MatBindToCPU_MPIDenseCUDA(B,PETSC_TRUE)); 16529566063dSJacob Faibussowitsch PetscCall(PetscFree(B->defaultvectype)); 16539566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(VECSTANDARD,&B->defaultvectype)); 16549566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B,MATMPIDENSE)); 16559566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpidensecuda_mpidense_C",NULL)); 16569566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaij_mpidensecuda_C",NULL)); 16579566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaijcusparse_mpidensecuda_C",NULL)); 16589566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaij_C",NULL)); 16599566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaijcusparse_C",NULL)); 16609566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArray_C",NULL)); 16619566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayRead_C",NULL)); 16629566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayWrite_C",NULL)); 16639566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArray_C",NULL)); 16649566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayRead_C",NULL)); 16659566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayWrite_C",NULL)); 16669566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAPlaceArray_C",NULL)); 16679566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAResetArray_C",NULL)); 16689566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAReplaceArray_C",NULL)); 1669637a0070SStefano Zampini m = (Mat_MPIDense*)(B)->data; 1670637a0070SStefano Zampini if (m->A) { 16719566063dSJacob Faibussowitsch PetscCall(MatConvert(m->A,MATSEQDENSE,MAT_INPLACE_MATRIX,&m->A)); 1672637a0070SStefano Zampini } 1673637a0070SStefano Zampini B->ops->bindtocpu = NULL; 1674637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_CPU; 1675637a0070SStefano Zampini PetscFunctionReturn(0); 1676637a0070SStefano Zampini } 1677637a0070SStefano Zampini 1678637a0070SStefano Zampini PetscErrorCode MatConvert_MPIDense_MPIDenseCUDA(Mat M,MatType type,MatReuse reuse,Mat *newmat) 1679637a0070SStefano Zampini { 1680637a0070SStefano Zampini Mat B; 1681637a0070SStefano Zampini Mat_MPIDense *m; 1682637a0070SStefano Zampini 1683637a0070SStefano Zampini PetscFunctionBegin; 1684637a0070SStefano Zampini if (reuse == MAT_INITIAL_MATRIX) { 16859566063dSJacob Faibussowitsch PetscCall(MatDuplicate(M,MAT_COPY_VALUES,newmat)); 1686637a0070SStefano Zampini } else if (reuse == MAT_REUSE_MATRIX) { 16879566063dSJacob Faibussowitsch PetscCall(MatCopy(M,*newmat,SAME_NONZERO_PATTERN)); 1688637a0070SStefano Zampini } 1689637a0070SStefano Zampini 1690637a0070SStefano Zampini B = *newmat; 16919566063dSJacob Faibussowitsch PetscCall(PetscFree(B->defaultvectype)); 16929566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(VECCUDA,&B->defaultvectype)); 16939566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B,MATMPIDENSECUDA)); 16949566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpidensecuda_mpidense_C", MatConvert_MPIDenseCUDA_MPIDense)); 16959566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaij_mpidensecuda_C", MatProductSetFromOptions_MPIAIJ_MPIDense)); 16969566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaijcusparse_mpidensecuda_C",MatProductSetFromOptions_MPIAIJ_MPIDense)); 16979566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaij_C", MatProductSetFromOptions_MPIDense_MPIAIJ)); 16989566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaijcusparse_C",MatProductSetFromOptions_MPIDense_MPIAIJ)); 16999566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArray_C", MatDenseCUDAGetArray_MPIDenseCUDA)); 17009566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayRead_C", MatDenseCUDAGetArrayRead_MPIDenseCUDA)); 17019566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayWrite_C", MatDenseCUDAGetArrayWrite_MPIDenseCUDA)); 17029566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArray_C", MatDenseCUDARestoreArray_MPIDenseCUDA)); 17039566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayRead_C", MatDenseCUDARestoreArrayRead_MPIDenseCUDA)); 17049566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayWrite_C", MatDenseCUDARestoreArrayWrite_MPIDenseCUDA)); 17059566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAPlaceArray_C", MatDenseCUDAPlaceArray_MPIDenseCUDA)); 17069566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAResetArray_C", MatDenseCUDAResetArray_MPIDenseCUDA)); 17079566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAReplaceArray_C", MatDenseCUDAReplaceArray_MPIDenseCUDA)); 1708f5ff9c66SStefano Zampini m = (Mat_MPIDense*)(B->data); 1709637a0070SStefano Zampini if (m->A) { 17109566063dSJacob Faibussowitsch PetscCall(MatConvert(m->A,MATSEQDENSECUDA,MAT_INPLACE_MATRIX,&m->A)); 1711637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_BOTH; 1712637a0070SStefano Zampini } else { 1713637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_UNALLOCATED; 1714637a0070SStefano Zampini } 17159566063dSJacob Faibussowitsch PetscCall(MatBindToCPU_MPIDenseCUDA(B,PETSC_FALSE)); 1716637a0070SStefano Zampini 1717637a0070SStefano Zampini B->ops->bindtocpu = MatBindToCPU_MPIDenseCUDA; 1718637a0070SStefano Zampini PetscFunctionReturn(0); 1719637a0070SStefano Zampini } 1720637a0070SStefano Zampini #endif 1721637a0070SStefano Zampini 17226947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVec_MPIDense(Mat A,PetscInt col,Vec *v) 17236947451fSStefano Zampini { 17246947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17256947451fSStefano Zampini PetscInt lda; 17266947451fSStefano Zampini 17276947451fSStefano Zampini PetscFunctionBegin; 172828b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 172928b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 17306947451fSStefano Zampini if (!a->cvec) { 17319566063dSJacob Faibussowitsch PetscCall(VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 17326947451fSStefano Zampini } 17336947451fSStefano Zampini a->vecinuse = col + 1; 17349566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 17359566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(a->A,(PetscScalar**)&a->ptrinuse)); 17369566063dSJacob Faibussowitsch PetscCall(VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 17376947451fSStefano Zampini *v = a->cvec; 17386947451fSStefano Zampini PetscFunctionReturn(0); 17396947451fSStefano Zampini } 17406947451fSStefano Zampini 17416947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVec_MPIDense(Mat A,PetscInt col,Vec *v) 17426947451fSStefano Zampini { 17436947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17446947451fSStefano Zampini 17456947451fSStefano Zampini PetscFunctionBegin; 174628b400f6SJacob Faibussowitsch PetscCheck(a->vecinuse,PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 174728b400f6SJacob Faibussowitsch PetscCheck(a->cvec,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector"); 17486947451fSStefano Zampini a->vecinuse = 0; 17499566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(a->A,(PetscScalar**)&a->ptrinuse)); 17509566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 17516947451fSStefano Zampini *v = NULL; 17526947451fSStefano Zampini PetscFunctionReturn(0); 17536947451fSStefano Zampini } 17546947451fSStefano Zampini 17556947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecRead_MPIDense(Mat A,PetscInt col,Vec *v) 17566947451fSStefano Zampini { 17576947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17586947451fSStefano Zampini PetscInt lda; 17596947451fSStefano Zampini 17606947451fSStefano Zampini PetscFunctionBegin; 176128b400f6SJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 176228b400f6SJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 17636947451fSStefano Zampini if (!a->cvec) { 17649566063dSJacob Faibussowitsch PetscCall(VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 17656947451fSStefano Zampini } 17666947451fSStefano Zampini a->vecinuse = col + 1; 17679566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 17689566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A,&a->ptrinuse)); 17699566063dSJacob Faibussowitsch PetscCall(VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 17709566063dSJacob Faibussowitsch PetscCall(VecLockReadPush(a->cvec)); 17716947451fSStefano Zampini *v = a->cvec; 17726947451fSStefano Zampini PetscFunctionReturn(0); 17736947451fSStefano Zampini } 17746947451fSStefano Zampini 17756947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecRead_MPIDense(Mat A,PetscInt col,Vec *v) 17766947451fSStefano Zampini { 17776947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17786947451fSStefano Zampini 17796947451fSStefano Zampini PetscFunctionBegin; 17805f80ce2aSJacob Faibussowitsch PetscCheck(a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 17815f80ce2aSJacob Faibussowitsch PetscCheck(a->cvec,PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 17826947451fSStefano Zampini a->vecinuse = 0; 17839566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A,&a->ptrinuse)); 17849566063dSJacob Faibussowitsch PetscCall(VecLockReadPop(a->cvec)); 17859566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 17866947451fSStefano Zampini *v = NULL; 17876947451fSStefano Zampini PetscFunctionReturn(0); 17886947451fSStefano Zampini } 17896947451fSStefano Zampini 17906947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecWrite_MPIDense(Mat A,PetscInt col,Vec *v) 17916947451fSStefano Zampini { 17926947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17936947451fSStefano Zampini PetscInt lda; 17946947451fSStefano Zampini 17956947451fSStefano Zampini PetscFunctionBegin; 17965f80ce2aSJacob Faibussowitsch PetscCheck(!a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 17975f80ce2aSJacob Faibussowitsch PetscCheck(!a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 17986947451fSStefano Zampini if (!a->cvec) { 17999566063dSJacob Faibussowitsch PetscCall(VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec)); 18006947451fSStefano Zampini } 18016947451fSStefano Zampini a->vecinuse = col + 1; 18029566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&lda)); 18039566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(a->A,(PetscScalar**)&a->ptrinuse)); 18049566063dSJacob Faibussowitsch PetscCall(VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda)); 18056947451fSStefano Zampini *v = a->cvec; 18066947451fSStefano Zampini PetscFunctionReturn(0); 18076947451fSStefano Zampini } 18086947451fSStefano Zampini 18096947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDense(Mat A,PetscInt col,Vec *v) 18106947451fSStefano Zampini { 18116947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 18126947451fSStefano Zampini 18136947451fSStefano Zampini PetscFunctionBegin; 18145f80ce2aSJacob Faibussowitsch PetscCheck(a->vecinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 18155f80ce2aSJacob Faibussowitsch PetscCheck(a->cvec,PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 18166947451fSStefano Zampini a->vecinuse = 0; 18179566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(a->A,(PetscScalar**)&a->ptrinuse)); 18189566063dSJacob Faibussowitsch PetscCall(VecResetArray(a->cvec)); 18196947451fSStefano Zampini *v = NULL; 18206947451fSStefano Zampini PetscFunctionReturn(0); 18216947451fSStefano Zampini } 18226947451fSStefano Zampini 1823*a2748737SPierre Jolivet PetscErrorCode MatDenseGetSubMatrix_MPIDense(Mat A,PetscInt rbegin,PetscInt rend,PetscInt cbegin,PetscInt cend,Mat *v) 18245ea7661aSPierre Jolivet { 18255ea7661aSPierre Jolivet Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1826616b8fbbSStefano Zampini Mat_MPIDense *c; 1827616b8fbbSStefano Zampini MPI_Comm comm; 1828*a2748737SPierre Jolivet PetscInt pbegin, pend; 18295ea7661aSPierre Jolivet 18305ea7661aSPierre Jolivet PetscFunctionBegin; 18319566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A,&comm)); 18325f80ce2aSJacob Faibussowitsch PetscCheck(!a->vecinuse,comm,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 18335f80ce2aSJacob Faibussowitsch PetscCheck(!a->matinuse,comm,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1834*a2748737SPierre Jolivet pbegin = PetscMax(0,PetscMin(A->rmap->rend,rbegin)-A->rmap->rstart); 1835*a2748737SPierre Jolivet pend = PetscMin(A->rmap->n,PetscMax(0,rend-A->rmap->rstart)); 18365ea7661aSPierre Jolivet if (!a->cmat) { 18379566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,&a->cmat)); 18389566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)A,(PetscObject)a->cmat)); 18399566063dSJacob Faibussowitsch PetscCall(MatSetType(a->cmat,((PetscObject)A)->type_name)); 1840*a2748737SPierre Jolivet if (rend-rbegin==A->rmap->N) PetscCall(PetscLayoutReference(A->rmap,&a->cmat->rmap)); 1841*a2748737SPierre Jolivet else { 1842*a2748737SPierre Jolivet PetscCall(PetscLayoutSetLocalSize(a->cmat->rmap,pend-pbegin)); 1843*a2748737SPierre Jolivet PetscCall(PetscLayoutSetSize(a->cmat->rmap,rend-rbegin)); 1844*a2748737SPierre Jolivet PetscCall(PetscLayoutSetUp(a->cmat->rmap)); 1845*a2748737SPierre Jolivet } 18469566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(a->cmat->cmap,cend-cbegin)); 18479566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(a->cmat->cmap)); 1848*a2748737SPierre Jolivet } else { 1849*a2748737SPierre Jolivet PetscBool same = (PetscBool)(rend-rbegin == a->cmat->rmap->N); 1850*a2748737SPierre Jolivet if (same && a->cmat->rmap->N != A->rmap->N) { 1851*a2748737SPierre Jolivet same = (PetscBool)(pend-pbegin == a->cmat->rmap->n); 1852*a2748737SPierre Jolivet PetscCall(MPIU_Allreduce(MPI_IN_PLACE,&same,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A))); 1853*a2748737SPierre Jolivet } 1854*a2748737SPierre Jolivet if (!same) { 1855*a2748737SPierre Jolivet PetscCall(PetscLayoutDestroy(&a->cmat->rmap)); 1856*a2748737SPierre Jolivet PetscCall(PetscLayoutCreate(comm,&a->cmat->rmap)); 1857*a2748737SPierre Jolivet PetscCall(PetscLayoutSetLocalSize(a->cmat->rmap,pend-pbegin)); 1858*a2748737SPierre Jolivet PetscCall(PetscLayoutSetSize(a->cmat->rmap,rend-rbegin)); 1859*a2748737SPierre Jolivet PetscCall(PetscLayoutSetUp(a->cmat->rmap)); 1860*a2748737SPierre Jolivet } 1861*a2748737SPierre Jolivet if (cend-cbegin != a->cmat->cmap->N) { 18629566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&a->cmat->cmap)); 18639566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm,&a->cmat->cmap)); 18649566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(a->cmat->cmap,cend-cbegin)); 18659566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(a->cmat->cmap)); 18665ea7661aSPierre Jolivet } 1867*a2748737SPierre Jolivet } 1868616b8fbbSStefano Zampini c = (Mat_MPIDense*)a->cmat->data; 18695f80ce2aSJacob Faibussowitsch PetscCheck(!c->A,comm,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1870*a2748737SPierre Jolivet PetscCall(MatDenseGetSubMatrix(a->A,pbegin,pend,cbegin,cend,&c->A)); 1871616b8fbbSStefano Zampini a->cmat->preallocated = PETSC_TRUE; 1872616b8fbbSStefano Zampini a->cmat->assembled = PETSC_TRUE; 18735ea7661aSPierre Jolivet a->matinuse = cbegin + 1; 18745ea7661aSPierre Jolivet *v = a->cmat; 18755ea7661aSPierre Jolivet PetscFunctionReturn(0); 18765ea7661aSPierre Jolivet } 18775ea7661aSPierre Jolivet 18785ea7661aSPierre Jolivet PetscErrorCode MatDenseRestoreSubMatrix_MPIDense(Mat A,Mat *v) 18795ea7661aSPierre Jolivet { 18805ea7661aSPierre Jolivet Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1881616b8fbbSStefano Zampini Mat_MPIDense *c; 18825ea7661aSPierre Jolivet 18835ea7661aSPierre Jolivet PetscFunctionBegin; 18845f80ce2aSJacob Faibussowitsch PetscCheck(a->matinuse,PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetSubMatrix() first"); 18855f80ce2aSJacob Faibussowitsch PetscCheck(a->cmat,PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal matrix"); 18865f80ce2aSJacob Faibussowitsch PetscCheck(*v == a->cmat,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Not the matrix obtained from MatDenseGetSubMatrix()"); 18875ea7661aSPierre Jolivet a->matinuse = 0; 1888616b8fbbSStefano Zampini c = (Mat_MPIDense*)a->cmat->data; 18899566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreSubMatrix(a->A,&c->A)); 18905ea7661aSPierre Jolivet *v = NULL; 18915ea7661aSPierre Jolivet PetscFunctionReturn(0); 18925ea7661aSPierre Jolivet } 18935ea7661aSPierre Jolivet 1894002bc6daSRichard Tran Mills /*MC 1895002bc6daSRichard Tran Mills MATMPIDENSE - MATMPIDENSE = "mpidense" - A matrix type to be used for distributed dense matrices. 1896002bc6daSRichard Tran Mills 1897002bc6daSRichard Tran Mills Options Database Keys: 1898002bc6daSRichard Tran Mills . -mat_type mpidense - sets the matrix type to "mpidense" during a call to MatSetFromOptions() 1899002bc6daSRichard Tran Mills 1900002bc6daSRichard Tran Mills Level: beginner 1901002bc6daSRichard Tran Mills 1902db781477SPatrick Sanan .seealso: `MatCreateDense()` 1903002bc6daSRichard Tran Mills 1904002bc6daSRichard Tran Mills M*/ 19058cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIDense(Mat mat) 1906273d9f13SBarry Smith { 1907273d9f13SBarry Smith Mat_MPIDense *a; 1908273d9f13SBarry Smith 1909273d9f13SBarry Smith PetscFunctionBegin; 19109566063dSJacob Faibussowitsch PetscCall(PetscNewLog(mat,&a)); 1911b0a32e0cSBarry Smith mat->data = (void*)a; 19129566063dSJacob Faibussowitsch PetscCall(PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps))); 1913273d9f13SBarry Smith 1914273d9f13SBarry Smith mat->insertmode = NOT_SET_VALUES; 1915273d9f13SBarry Smith 1916273d9f13SBarry Smith /* build cache for off array entries formed */ 1917273d9f13SBarry Smith a->donotstash = PETSC_FALSE; 19182205254eSKarl Rupp 19199566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)mat),1,&mat->stash)); 1920273d9f13SBarry Smith 1921273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 1922f4259b30SLisandro Dalcin a->lvec = NULL; 1923f4259b30SLisandro Dalcin a->Mvctx = NULL; 1924273d9f13SBarry Smith a->roworiented = PETSC_TRUE; 1925273d9f13SBarry Smith 19269566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",MatDenseGetLDA_MPIDense)); 19279566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseSetLDA_C",MatDenseSetLDA_MPIDense)); 19289566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",MatDenseGetArray_MPIDense)); 19299566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",MatDenseRestoreArray_MPIDense)); 19309566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",MatDenseGetArrayRead_MPIDense)); 19319566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",MatDenseRestoreArrayRead_MPIDense)); 19329566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayWrite_C",MatDenseGetArrayWrite_MPIDense)); 19339566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayWrite_C",MatDenseRestoreArrayWrite_MPIDense)); 19349566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",MatDensePlaceArray_MPIDense)); 19359566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",MatDenseResetArray_MPIDense)); 19369566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseReplaceArray_C",MatDenseReplaceArray_MPIDense)); 19379566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDense)); 19389566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDense)); 19399566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDense)); 19409566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDense)); 19419566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDense)); 19429566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDense)); 19439566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetSubMatrix_C",MatDenseGetSubMatrix_MPIDense)); 19449566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreSubMatrix_C",MatDenseRestoreSubMatrix_MPIDense)); 19459566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpiaij_mpidense_C",MatConvert_MPIAIJ_MPIDense)); 19469566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_mpiaij_C",MatConvert_MPIDense_MPIAIJ)); 19478baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 19489566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",MatConvert_MPIDense_Elemental)); 19498baccfbdSHong Zhang #endif 1950d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 19519566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_scalapack_C",MatConvert_Dense_ScaLAPACK)); 1952d24d4204SJose E. Roman #endif 1953637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 19549566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_mpidensecuda_C",MatConvert_MPIDense_MPIDenseCUDA)); 1955637a0070SStefano Zampini #endif 19569566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",MatMPIDenseSetPreallocation_MPIDense)); 19579566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaij_mpidense_C",MatProductSetFromOptions_MPIAIJ_MPIDense)); 19589566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaij_C",MatProductSetFromOptions_MPIDense_MPIAIJ)); 19596718818eSStefano Zampini #if defined(PETSC_HAVE_CUDA) 19609566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaijcusparse_mpidense_C",MatProductSetFromOptions_MPIAIJ_MPIDense)); 19619566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaijcusparse_C",MatProductSetFromOptions_MPIDense_MPIAIJ)); 19626718818eSStefano Zampini #endif 19638949adfdSHong Zhang 19649566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",MatDenseGetColumn_MPIDense)); 19659566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",MatDenseRestoreColumn_MPIDense)); 19669566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)mat,MATMPIDENSE)); 1967273d9f13SBarry Smith PetscFunctionReturn(0); 1968273d9f13SBarry Smith } 1969273d9f13SBarry Smith 1970209238afSKris Buschelman /*MC 1971637a0070SStefano Zampini MATMPIDENSECUDA - MATMPIDENSECUDA = "mpidensecuda" - A matrix type to be used for distributed dense matrices on GPUs. 1972637a0070SStefano Zampini 1973637a0070SStefano Zampini Options Database Keys: 1974637a0070SStefano Zampini . -mat_type mpidensecuda - sets the matrix type to "mpidensecuda" during a call to MatSetFromOptions() 1975637a0070SStefano Zampini 1976637a0070SStefano Zampini Level: beginner 1977637a0070SStefano Zampini 1978637a0070SStefano Zampini .seealso: 1979637a0070SStefano Zampini 1980637a0070SStefano Zampini M*/ 1981637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1982a4af0ceeSJacob Faibussowitsch #include <petsc/private/deviceimpl.h> 1983637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreate_MPIDenseCUDA(Mat B) 1984637a0070SStefano Zampini { 1985637a0070SStefano Zampini PetscFunctionBegin; 19869566063dSJacob Faibussowitsch PetscCall(PetscDeviceInitialize(PETSC_DEVICE_CUDA)); 19879566063dSJacob Faibussowitsch PetscCall(MatCreate_MPIDense(B)); 19889566063dSJacob Faibussowitsch PetscCall(MatConvert_MPIDense_MPIDenseCUDA(B,MATMPIDENSECUDA,MAT_INPLACE_MATRIX,&B)); 1989637a0070SStefano Zampini PetscFunctionReturn(0); 1990637a0070SStefano Zampini } 1991637a0070SStefano Zampini #endif 1992637a0070SStefano Zampini 1993637a0070SStefano Zampini /*MC 1994002d173eSKris Buschelman MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices. 1995209238afSKris Buschelman 1996209238afSKris Buschelman This matrix type is identical to MATSEQDENSE when constructed with a single process communicator, 1997209238afSKris Buschelman and MATMPIDENSE otherwise. 1998209238afSKris Buschelman 1999209238afSKris Buschelman Options Database Keys: 2000209238afSKris Buschelman . -mat_type dense - sets the matrix type to "dense" during a call to MatSetFromOptions() 2001209238afSKris Buschelman 2002209238afSKris Buschelman Level: beginner 2003209238afSKris Buschelman 2004c2e3fba1SPatrick Sanan .seealso: `MATSEQDENSE`, `MATMPIDENSE`, `MATDENSECUDA` 20056947451fSStefano Zampini M*/ 20066947451fSStefano Zampini 20076947451fSStefano Zampini /*MC 20086947451fSStefano Zampini MATDENSECUDA - MATDENSECUDA = "densecuda" - A matrix type to be used for dense matrices on GPUs. 20096947451fSStefano Zampini 20106947451fSStefano Zampini This matrix type is identical to MATSEQDENSECUDA when constructed with a single process communicator, 20116947451fSStefano Zampini and MATMPIDENSECUDA otherwise. 20126947451fSStefano Zampini 20136947451fSStefano Zampini Options Database Keys: 20146947451fSStefano Zampini . -mat_type densecuda - sets the matrix type to "densecuda" during a call to MatSetFromOptions() 20156947451fSStefano Zampini 20166947451fSStefano Zampini Level: beginner 20176947451fSStefano Zampini 2018c2e3fba1SPatrick Sanan .seealso: `MATSEQDENSECUDA`, `MATMPIDENSECUDA`, `MATDENSE` 2019209238afSKris Buschelman M*/ 2020209238afSKris Buschelman 2021273d9f13SBarry Smith /*@C 2022273d9f13SBarry Smith MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries 2023273d9f13SBarry Smith 20248f490ea3SStefano Zampini Collective 2025273d9f13SBarry Smith 2026273d9f13SBarry Smith Input Parameters: 20271c4f3114SJed Brown . B - the matrix 20280298fd71SBarry Smith - data - optional location of matrix data. Set data=NULL for PETSc 2029273d9f13SBarry Smith to control all matrix memory allocation. 2030273d9f13SBarry Smith 2031273d9f13SBarry Smith Notes: 2032273d9f13SBarry Smith The dense format is fully compatible with standard Fortran 77 2033273d9f13SBarry Smith storage by columns. 2034273d9f13SBarry Smith 2035273d9f13SBarry Smith The data input variable is intended primarily for Fortran programmers 2036273d9f13SBarry Smith who wish to allocate their own matrix memory space. Most users should 20370298fd71SBarry Smith set data=NULL. 2038273d9f13SBarry Smith 2039273d9f13SBarry Smith Level: intermediate 2040273d9f13SBarry Smith 2041db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqDense()`, `MatSetValues()` 2042273d9f13SBarry Smith @*/ 20431c4f3114SJed Brown PetscErrorCode MatMPIDenseSetPreallocation(Mat B,PetscScalar *data) 2044273d9f13SBarry Smith { 2045273d9f13SBarry Smith PetscFunctionBegin; 2046d5ea218eSStefano Zampini PetscValidHeaderSpecific(B,MAT_CLASSID,1); 2047cac4c232SBarry Smith PetscTryMethod(B,"MatMPIDenseSetPreallocation_C",(Mat,PetscScalar*),(B,data)); 2048273d9f13SBarry Smith PetscFunctionReturn(0); 2049273d9f13SBarry Smith } 2050273d9f13SBarry Smith 2051d3042a70SBarry Smith /*@ 2052637a0070SStefano Zampini MatDensePlaceArray - Allows one to replace the array in a dense matrix with an 2053d3042a70SBarry Smith array provided by the user. This is useful to avoid copying an array 2054d3042a70SBarry Smith into a matrix 2055d3042a70SBarry Smith 2056d3042a70SBarry Smith Not Collective 2057d3042a70SBarry Smith 2058d3042a70SBarry Smith Input Parameters: 2059d3042a70SBarry Smith + mat - the matrix 2060d3042a70SBarry Smith - array - the array in column major order 2061d3042a70SBarry Smith 2062d3042a70SBarry Smith Notes: 2063d3042a70SBarry Smith You can return to the original array with a call to MatDenseResetArray(). The user is responsible for freeing this array; it will not be 2064d3042a70SBarry Smith freed when the matrix is destroyed. 2065d3042a70SBarry Smith 2066d3042a70SBarry Smith Level: developer 2067d3042a70SBarry Smith 2068db781477SPatrick Sanan .seealso: `MatDenseGetArray()`, `MatDenseResetArray()`, `VecPlaceArray()`, `VecGetArray()`, `VecRestoreArray()`, `VecReplaceArray()`, `VecResetArray()` 2069d3042a70SBarry Smith 2070d3042a70SBarry Smith @*/ 2071637a0070SStefano Zampini PetscErrorCode MatDensePlaceArray(Mat mat,const PetscScalar *array) 2072d3042a70SBarry Smith { 2073d3042a70SBarry Smith PetscFunctionBegin; 2074d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2075cac4c232SBarry Smith PetscUseMethod(mat,"MatDensePlaceArray_C",(Mat,const PetscScalar*),(mat,array)); 20769566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2077637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 2078637a0070SStefano Zampini mat->offloadmask = PETSC_OFFLOAD_CPU; 2079637a0070SStefano Zampini #endif 2080d3042a70SBarry Smith PetscFunctionReturn(0); 2081d3042a70SBarry Smith } 2082d3042a70SBarry Smith 2083d3042a70SBarry Smith /*@ 2084d3042a70SBarry Smith MatDenseResetArray - Resets the matrix array to that it previously had before the call to MatDensePlaceArray() 2085d3042a70SBarry Smith 2086d3042a70SBarry Smith Not Collective 2087d3042a70SBarry Smith 2088d3042a70SBarry Smith Input Parameters: 2089d3042a70SBarry Smith . mat - the matrix 2090d3042a70SBarry Smith 2091d3042a70SBarry Smith Notes: 2092d3042a70SBarry Smith You can only call this after a call to MatDensePlaceArray() 2093d3042a70SBarry Smith 2094d3042a70SBarry Smith Level: developer 2095d3042a70SBarry Smith 2096db781477SPatrick Sanan .seealso: `MatDenseGetArray()`, `MatDensePlaceArray()`, `VecPlaceArray()`, `VecGetArray()`, `VecRestoreArray()`, `VecReplaceArray()`, `VecResetArray()` 2097d3042a70SBarry Smith 2098d3042a70SBarry Smith @*/ 2099d3042a70SBarry Smith PetscErrorCode MatDenseResetArray(Mat mat) 2100d3042a70SBarry Smith { 2101d3042a70SBarry Smith PetscFunctionBegin; 2102d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2103cac4c232SBarry Smith PetscUseMethod(mat,"MatDenseResetArray_C",(Mat),(mat)); 21049566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2105d3042a70SBarry Smith PetscFunctionReturn(0); 2106d3042a70SBarry Smith } 2107d3042a70SBarry Smith 2108d5ea218eSStefano Zampini /*@ 2109d5ea218eSStefano Zampini MatDenseReplaceArray - Allows one to replace the array in a dense matrix with an 2110d5ea218eSStefano Zampini array provided by the user. This is useful to avoid copying an array 2111d5ea218eSStefano Zampini into a matrix 2112d5ea218eSStefano Zampini 2113d5ea218eSStefano Zampini Not Collective 2114d5ea218eSStefano Zampini 2115d5ea218eSStefano Zampini Input Parameters: 2116d5ea218eSStefano Zampini + mat - the matrix 2117d5ea218eSStefano Zampini - array - the array in column major order 2118d5ea218eSStefano Zampini 2119d5ea218eSStefano Zampini Notes: 2120d5ea218eSStefano Zampini The memory passed in MUST be obtained with PetscMalloc() and CANNOT be 2121d5ea218eSStefano Zampini freed by the user. It will be freed when the matrix is destroyed. 2122d5ea218eSStefano Zampini 2123d5ea218eSStefano Zampini Level: developer 2124d5ea218eSStefano Zampini 2125db781477SPatrick Sanan .seealso: `MatDenseGetArray()`, `VecReplaceArray()` 2126d5ea218eSStefano Zampini @*/ 2127d5ea218eSStefano Zampini PetscErrorCode MatDenseReplaceArray(Mat mat,const PetscScalar *array) 2128d5ea218eSStefano Zampini { 2129d5ea218eSStefano Zampini PetscFunctionBegin; 2130d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2131cac4c232SBarry Smith PetscUseMethod(mat,"MatDenseReplaceArray_C",(Mat,const PetscScalar*),(mat,array)); 21329566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2133d5ea218eSStefano Zampini #if defined(PETSC_HAVE_CUDA) 2134d5ea218eSStefano Zampini mat->offloadmask = PETSC_OFFLOAD_CPU; 2135d5ea218eSStefano Zampini #endif 2136d5ea218eSStefano Zampini PetscFunctionReturn(0); 2137d5ea218eSStefano Zampini } 2138d5ea218eSStefano Zampini 2139637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 21408965ea79SLois Curfman McInnes /*@C 2141637a0070SStefano Zampini MatDenseCUDAPlaceArray - Allows one to replace the GPU array in a dense matrix with an 2142637a0070SStefano Zampini array provided by the user. This is useful to avoid copying an array 2143637a0070SStefano Zampini into a matrix 2144637a0070SStefano Zampini 2145637a0070SStefano Zampini Not Collective 2146637a0070SStefano Zampini 2147637a0070SStefano Zampini Input Parameters: 2148637a0070SStefano Zampini + mat - the matrix 2149637a0070SStefano Zampini - array - the array in column major order 2150637a0070SStefano Zampini 2151637a0070SStefano Zampini Notes: 2152637a0070SStefano Zampini You can return to the original array with a call to MatDenseCUDAResetArray(). The user is responsible for freeing this array; it will not be 2153637a0070SStefano Zampini freed when the matrix is destroyed. The array must have been allocated with cudaMalloc(). 2154637a0070SStefano Zampini 2155637a0070SStefano Zampini Level: developer 2156637a0070SStefano Zampini 2157db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDAResetArray()` 2158637a0070SStefano Zampini @*/ 2159637a0070SStefano Zampini PetscErrorCode MatDenseCUDAPlaceArray(Mat mat,const PetscScalar *array) 2160637a0070SStefano Zampini { 2161637a0070SStefano Zampini PetscFunctionBegin; 2162d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2163cac4c232SBarry Smith PetscUseMethod(mat,"MatDenseCUDAPlaceArray_C",(Mat,const PetscScalar*),(mat,array)); 21649566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2165637a0070SStefano Zampini mat->offloadmask = PETSC_OFFLOAD_GPU; 2166637a0070SStefano Zampini PetscFunctionReturn(0); 2167637a0070SStefano Zampini } 2168637a0070SStefano Zampini 2169637a0070SStefano Zampini /*@C 2170637a0070SStefano Zampini MatDenseCUDAResetArray - Resets the matrix array to that it previously had before the call to MatDenseCUDAPlaceArray() 2171637a0070SStefano Zampini 2172637a0070SStefano Zampini Not Collective 2173637a0070SStefano Zampini 2174637a0070SStefano Zampini Input Parameters: 2175637a0070SStefano Zampini . mat - the matrix 2176637a0070SStefano Zampini 2177637a0070SStefano Zampini Notes: 2178637a0070SStefano Zampini You can only call this after a call to MatDenseCUDAPlaceArray() 2179637a0070SStefano Zampini 2180637a0070SStefano Zampini Level: developer 2181637a0070SStefano Zampini 2182db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDAPlaceArray()` 2183637a0070SStefano Zampini 2184637a0070SStefano Zampini @*/ 2185637a0070SStefano Zampini PetscErrorCode MatDenseCUDAResetArray(Mat mat) 2186637a0070SStefano Zampini { 2187637a0070SStefano Zampini PetscFunctionBegin; 2188d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2189cac4c232SBarry Smith PetscUseMethod(mat,"MatDenseCUDAResetArray_C",(Mat),(mat)); 21909566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2191637a0070SStefano Zampini PetscFunctionReturn(0); 2192637a0070SStefano Zampini } 2193637a0070SStefano Zampini 2194637a0070SStefano Zampini /*@C 2195d5ea218eSStefano Zampini MatDenseCUDAReplaceArray - Allows one to replace the GPU array in a dense matrix with an 2196d5ea218eSStefano Zampini array provided by the user. This is useful to avoid copying an array 2197d5ea218eSStefano Zampini into a matrix 2198d5ea218eSStefano Zampini 2199d5ea218eSStefano Zampini Not Collective 2200d5ea218eSStefano Zampini 2201d5ea218eSStefano Zampini Input Parameters: 2202d5ea218eSStefano Zampini + mat - the matrix 2203d5ea218eSStefano Zampini - array - the array in column major order 2204d5ea218eSStefano Zampini 2205d5ea218eSStefano Zampini Notes: 2206d5ea218eSStefano Zampini This permanently replaces the GPU array and frees the memory associated with the old GPU array. 2207d5ea218eSStefano Zampini The memory passed in CANNOT be freed by the user. It will be freed 2208d5ea218eSStefano Zampini when the matrix is destroyed. The array should respect the matrix leading dimension. 2209d5ea218eSStefano Zampini 2210d5ea218eSStefano Zampini Level: developer 2211d5ea218eSStefano Zampini 2212db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDAPlaceArray()`, `MatDenseCUDAResetArray()` 2213d5ea218eSStefano Zampini @*/ 2214d5ea218eSStefano Zampini PetscErrorCode MatDenseCUDAReplaceArray(Mat mat,const PetscScalar *array) 2215d5ea218eSStefano Zampini { 2216d5ea218eSStefano Zampini PetscFunctionBegin; 2217d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2218cac4c232SBarry Smith PetscUseMethod(mat,"MatDenseCUDAReplaceArray_C",(Mat,const PetscScalar*),(mat,array)); 22199566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)mat)); 2220d5ea218eSStefano Zampini mat->offloadmask = PETSC_OFFLOAD_GPU; 2221d5ea218eSStefano Zampini PetscFunctionReturn(0); 2222d5ea218eSStefano Zampini } 2223d5ea218eSStefano Zampini 2224d5ea218eSStefano Zampini /*@C 2225637a0070SStefano Zampini MatDenseCUDAGetArrayWrite - Provides write access to the CUDA buffer inside a dense matrix. 2226637a0070SStefano Zampini 2227637a0070SStefano Zampini Not Collective 2228637a0070SStefano Zampini 2229637a0070SStefano Zampini Input Parameters: 2230637a0070SStefano Zampini . A - the matrix 2231637a0070SStefano Zampini 2232637a0070SStefano Zampini Output Parameters 2233637a0070SStefano Zampini . array - the GPU array in column major order 2234637a0070SStefano Zampini 2235637a0070SStefano Zampini Notes: 2236637a0070SStefano Zampini The data on the GPU may not be updated due to operations done on the CPU. If you need updated data, use MatDenseCUDAGetArray(). The array must be restored with MatDenseCUDARestoreArrayWrite() when no longer needed. 2237637a0070SStefano Zampini 2238637a0070SStefano Zampini Level: developer 2239637a0070SStefano Zampini 2240db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDARestoreArray()`, `MatDenseCUDARestoreArrayWrite()`, `MatDenseCUDAGetArrayRead()`, `MatDenseCUDARestoreArrayRead()` 2241637a0070SStefano Zampini @*/ 2242637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArrayWrite(Mat A, PetscScalar **a) 2243637a0070SStefano Zampini { 2244637a0070SStefano Zampini PetscFunctionBegin; 2245d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2246cac4c232SBarry Smith PetscUseMethod(A,"MatDenseCUDAGetArrayWrite_C",(Mat,PetscScalar**),(A,a)); 22479566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)A)); 2248637a0070SStefano Zampini PetscFunctionReturn(0); 2249637a0070SStefano Zampini } 2250637a0070SStefano Zampini 2251637a0070SStefano Zampini /*@C 2252637a0070SStefano Zampini MatDenseCUDARestoreArrayWrite - Restore write access to the CUDA buffer inside a dense matrix previously obtained with MatDenseCUDAGetArrayWrite(). 2253637a0070SStefano Zampini 2254637a0070SStefano Zampini Not Collective 2255637a0070SStefano Zampini 2256637a0070SStefano Zampini Input Parameters: 2257637a0070SStefano Zampini + A - the matrix 2258637a0070SStefano Zampini - array - the GPU array in column major order 2259637a0070SStefano Zampini 2260637a0070SStefano Zampini Notes: 2261637a0070SStefano Zampini 2262637a0070SStefano Zampini Level: developer 2263637a0070SStefano Zampini 2264db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDARestoreArray()`, `MatDenseCUDAGetArrayWrite()`, `MatDenseCUDARestoreArrayRead()`, `MatDenseCUDAGetArrayRead()` 2265637a0070SStefano Zampini @*/ 2266637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArrayWrite(Mat A, PetscScalar **a) 2267637a0070SStefano Zampini { 2268637a0070SStefano Zampini PetscFunctionBegin; 2269d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2270cac4c232SBarry Smith PetscUseMethod(A,"MatDenseCUDARestoreArrayWrite_C",(Mat,PetscScalar**),(A,a)); 22719566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)A)); 2272637a0070SStefano Zampini A->offloadmask = PETSC_OFFLOAD_GPU; 2273637a0070SStefano Zampini PetscFunctionReturn(0); 2274637a0070SStefano Zampini } 2275637a0070SStefano Zampini 2276637a0070SStefano Zampini /*@C 2277637a0070SStefano Zampini MatDenseCUDAGetArrayRead - Provides read-only access to the CUDA buffer inside a dense matrix. The array must be restored with MatDenseCUDARestoreArrayRead() when no longer needed. 2278637a0070SStefano Zampini 2279637a0070SStefano Zampini Not Collective 2280637a0070SStefano Zampini 2281637a0070SStefano Zampini Input Parameters: 2282637a0070SStefano Zampini . A - the matrix 2283637a0070SStefano Zampini 2284637a0070SStefano Zampini Output Parameters 2285637a0070SStefano Zampini . array - the GPU array in column major order 2286637a0070SStefano Zampini 2287637a0070SStefano Zampini Notes: 2288637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). 2289637a0070SStefano Zampini 2290637a0070SStefano Zampini Level: developer 2291637a0070SStefano Zampini 2292db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDARestoreArray()`, `MatDenseCUDARestoreArrayWrite()`, `MatDenseCUDAGetArrayWrite()`, `MatDenseCUDARestoreArrayRead()` 2293637a0070SStefano Zampini @*/ 2294637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArrayRead(Mat A, const PetscScalar **a) 2295637a0070SStefano Zampini { 2296637a0070SStefano Zampini PetscFunctionBegin; 2297d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2298cac4c232SBarry Smith PetscUseMethod(A,"MatDenseCUDAGetArrayRead_C",(Mat,const PetscScalar**),(A,a)); 2299637a0070SStefano Zampini PetscFunctionReturn(0); 2300637a0070SStefano Zampini } 2301637a0070SStefano Zampini 2302637a0070SStefano Zampini /*@C 2303637a0070SStefano Zampini MatDenseCUDARestoreArrayRead - Restore read-only access to the CUDA buffer inside a dense matrix previously obtained with a call to MatDenseCUDAGetArrayRead(). 2304637a0070SStefano Zampini 2305637a0070SStefano Zampini Not Collective 2306637a0070SStefano Zampini 2307637a0070SStefano Zampini Input Parameters: 2308637a0070SStefano Zampini + A - the matrix 2309637a0070SStefano Zampini - array - the GPU array in column major order 2310637a0070SStefano Zampini 2311637a0070SStefano Zampini Notes: 2312637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). 2313637a0070SStefano Zampini 2314637a0070SStefano Zampini Level: developer 2315637a0070SStefano Zampini 2316db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDARestoreArray()`, `MatDenseCUDARestoreArrayWrite()`, `MatDenseCUDAGetArrayWrite()`, `MatDenseCUDAGetArrayRead()` 2317637a0070SStefano Zampini @*/ 2318637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArrayRead(Mat A, const PetscScalar **a) 2319637a0070SStefano Zampini { 2320637a0070SStefano Zampini PetscFunctionBegin; 2321cac4c232SBarry Smith PetscUseMethod(A,"MatDenseCUDARestoreArrayRead_C",(Mat,const PetscScalar**),(A,a)); 2322637a0070SStefano Zampini PetscFunctionReturn(0); 2323637a0070SStefano Zampini } 2324637a0070SStefano Zampini 2325637a0070SStefano Zampini /*@C 2326637a0070SStefano Zampini MatDenseCUDAGetArray - Provides access to the CUDA buffer inside a dense matrix. The array must be restored with MatDenseCUDARestoreArray() when no longer needed. 2327637a0070SStefano Zampini 2328637a0070SStefano Zampini Not Collective 2329637a0070SStefano Zampini 2330637a0070SStefano Zampini Input Parameters: 2331637a0070SStefano Zampini . A - the matrix 2332637a0070SStefano Zampini 2333637a0070SStefano Zampini Output Parameters 2334637a0070SStefano Zampini . array - the GPU array in column major order 2335637a0070SStefano Zampini 2336637a0070SStefano Zampini Notes: 2337637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). For read-only access, use MatDenseCUDAGetArrayRead(). 2338637a0070SStefano Zampini 2339637a0070SStefano Zampini Level: developer 2340637a0070SStefano Zampini 2341db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArrayRead()`, `MatDenseCUDARestoreArray()`, `MatDenseCUDARestoreArrayWrite()`, `MatDenseCUDAGetArrayWrite()`, `MatDenseCUDARestoreArrayRead()` 2342637a0070SStefano Zampini @*/ 2343637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArray(Mat A, PetscScalar **a) 2344637a0070SStefano Zampini { 2345637a0070SStefano Zampini PetscFunctionBegin; 2346d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2347cac4c232SBarry Smith PetscUseMethod(A,"MatDenseCUDAGetArray_C",(Mat,PetscScalar**),(A,a)); 23489566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)A)); 2349637a0070SStefano Zampini PetscFunctionReturn(0); 2350637a0070SStefano Zampini } 2351637a0070SStefano Zampini 2352637a0070SStefano Zampini /*@C 2353637a0070SStefano Zampini MatDenseCUDARestoreArray - Restore access to the CUDA buffer inside a dense matrix previously obtained with MatDenseCUDAGetArray(). 2354637a0070SStefano Zampini 2355637a0070SStefano Zampini Not Collective 2356637a0070SStefano Zampini 2357637a0070SStefano Zampini Input Parameters: 2358637a0070SStefano Zampini + A - the matrix 2359637a0070SStefano Zampini - array - the GPU array in column major order 2360637a0070SStefano Zampini 2361637a0070SStefano Zampini Notes: 2362637a0070SStefano Zampini 2363637a0070SStefano Zampini Level: developer 2364637a0070SStefano Zampini 2365db781477SPatrick Sanan .seealso: `MatDenseCUDAGetArray()`, `MatDenseCUDARestoreArrayWrite()`, `MatDenseCUDAGetArrayWrite()`, `MatDenseCUDARestoreArrayRead()`, `MatDenseCUDAGetArrayRead()` 2366637a0070SStefano Zampini @*/ 2367637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArray(Mat A, PetscScalar **a) 2368637a0070SStefano Zampini { 2369637a0070SStefano Zampini PetscFunctionBegin; 2370d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2371cac4c232SBarry Smith PetscUseMethod(A,"MatDenseCUDARestoreArray_C",(Mat,PetscScalar**),(A,a)); 23729566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)A)); 2373637a0070SStefano Zampini A->offloadmask = PETSC_OFFLOAD_GPU; 2374637a0070SStefano Zampini PetscFunctionReturn(0); 2375637a0070SStefano Zampini } 2376637a0070SStefano Zampini #endif 2377637a0070SStefano Zampini 2378637a0070SStefano Zampini /*@C 2379637a0070SStefano Zampini MatCreateDense - Creates a matrix in dense format. 23808965ea79SLois Curfman McInnes 2381d083f849SBarry Smith Collective 2382db81eaa0SLois Curfman McInnes 23838965ea79SLois Curfman McInnes Input Parameters: 2384db81eaa0SLois Curfman McInnes + comm - MPI communicator 23858965ea79SLois Curfman McInnes . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2386db81eaa0SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 23878965ea79SLois Curfman McInnes . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 2388db81eaa0SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 23896cfe35ddSJose E. Roman - data - optional location of matrix data. Set data=NULL (PETSC_NULL_SCALAR for Fortran users) for PETSc 2390dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 23918965ea79SLois Curfman McInnes 23928965ea79SLois Curfman McInnes Output Parameter: 2393477f1c0bSLois Curfman McInnes . A - the matrix 23948965ea79SLois Curfman McInnes 2395b259b22eSLois Curfman McInnes Notes: 239639ddd567SLois Curfman McInnes The dense format is fully compatible with standard Fortran 77 239739ddd567SLois Curfman McInnes storage by columns. 2398002bc6daSRichard Tran Mills Note that, although local portions of the matrix are stored in column-major 2399002bc6daSRichard Tran Mills order, the matrix is partitioned across MPI ranks by row. 24008965ea79SLois Curfman McInnes 240118f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 240218f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 24036cfe35ddSJose E. Roman set data=NULL (PETSC_NULL_SCALAR for Fortran users). 240418f449edSLois Curfman McInnes 24058965ea79SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 24068965ea79SLois Curfman McInnes (possibly both). 24078965ea79SLois Curfman McInnes 2408027ccd11SLois Curfman McInnes Level: intermediate 2409027ccd11SLois Curfman McInnes 2410db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqDense()`, `MatSetValues()` 24118965ea79SLois Curfman McInnes @*/ 241269b1f4b7SBarry Smith PetscErrorCode MatCreateDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 24138965ea79SLois Curfman McInnes { 24143a40ed3dSBarry Smith PetscFunctionBegin; 24159566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,A)); 24169566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A,m,n,M,N)); 24176f08ad05SPierre Jolivet PetscCall(MatSetType(*A,MATDENSE)); 24189566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(*A,data)); 24196f08ad05SPierre Jolivet PetscCall(MatMPIDenseSetPreallocation(*A,data)); 24203a40ed3dSBarry Smith PetscFunctionReturn(0); 24218965ea79SLois Curfman McInnes } 24228965ea79SLois Curfman McInnes 2423637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 2424637a0070SStefano Zampini /*@C 2425637a0070SStefano Zampini MatCreateDenseCUDA - Creates a matrix in dense format using CUDA. 2426637a0070SStefano Zampini 2427637a0070SStefano Zampini Collective 2428637a0070SStefano Zampini 2429637a0070SStefano Zampini Input Parameters: 2430637a0070SStefano Zampini + comm - MPI communicator 2431637a0070SStefano Zampini . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2432637a0070SStefano Zampini . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 2433637a0070SStefano Zampini . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 2434637a0070SStefano Zampini . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 2435637a0070SStefano Zampini - data - optional location of GPU matrix data. Set data=NULL for PETSc 2436637a0070SStefano Zampini to control matrix memory allocation. 2437637a0070SStefano Zampini 2438637a0070SStefano Zampini Output Parameter: 2439637a0070SStefano Zampini . A - the matrix 2440637a0070SStefano Zampini 2441637a0070SStefano Zampini Notes: 2442637a0070SStefano Zampini 2443637a0070SStefano Zampini Level: intermediate 2444637a0070SStefano Zampini 2445db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateDense()` 2446637a0070SStefano Zampini @*/ 2447637a0070SStefano Zampini PetscErrorCode MatCreateDenseCUDA(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 2448637a0070SStefano Zampini { 2449637a0070SStefano Zampini PetscFunctionBegin; 24509566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,A)); 2451637a0070SStefano Zampini PetscValidLogicalCollectiveBool(*A,!!data,6); 24529566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A,m,n,M,N)); 24536f08ad05SPierre Jolivet PetscCall(MatSetType(*A,MATDENSECUDA)); 24549566063dSJacob Faibussowitsch PetscCall(MatSeqDenseCUDASetPreallocation(*A,data)); 24556f08ad05SPierre Jolivet PetscCall(MatMPIDenseCUDASetPreallocation(*A,data)); 2456637a0070SStefano Zampini PetscFunctionReturn(0); 2457637a0070SStefano Zampini } 2458637a0070SStefano Zampini #endif 2459637a0070SStefano Zampini 24606849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat) 24618965ea79SLois Curfman McInnes { 24628965ea79SLois Curfman McInnes Mat mat; 24633501a2bdSLois Curfman McInnes Mat_MPIDense *a,*oldmat = (Mat_MPIDense*)A->data; 24648965ea79SLois Curfman McInnes 24653a40ed3dSBarry Smith PetscFunctionBegin; 2466f4259b30SLisandro Dalcin *newmat = NULL; 24679566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&mat)); 24689566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N)); 24699566063dSJacob Faibussowitsch PetscCall(MatSetType(mat,((PetscObject)A)->type_name)); 2470834f8fabSBarry Smith a = (Mat_MPIDense*)mat->data; 24715aa7edbeSHong Zhang 2472d5f3da31SBarry Smith mat->factortype = A->factortype; 2473c456f294SBarry Smith mat->assembled = PETSC_TRUE; 2474273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 24758965ea79SLois Curfman McInnes 2476e0fa3b82SLois Curfman McInnes mat->insertmode = NOT_SET_VALUES; 24773782ba37SSatish Balay a->donotstash = oldmat->donotstash; 2478e04c1aa4SHong Zhang 24799566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->rmap,&mat->rmap)); 24809566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(A->cmap,&mat->cmap)); 24818965ea79SLois Curfman McInnes 24829566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A,cpvalues,&a->A)); 24839566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A)); 248401b82886SBarry Smith 24858965ea79SLois Curfman McInnes *newmat = mat; 24863a40ed3dSBarry Smith PetscFunctionReturn(0); 24878965ea79SLois Curfman McInnes } 24888965ea79SLois Curfman McInnes 2489eb91f321SVaclav Hapla PetscErrorCode MatLoad_MPIDense(Mat newMat, PetscViewer viewer) 2490eb91f321SVaclav Hapla { 249187d5ce66SSatish Balay PetscBool isbinary; 249287d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 249387d5ce66SSatish Balay PetscBool ishdf5; 249487d5ce66SSatish Balay #endif 2495eb91f321SVaclav Hapla 2496eb91f321SVaclav Hapla PetscFunctionBegin; 2497eb91f321SVaclav Hapla PetscValidHeaderSpecific(newMat,MAT_CLASSID,1); 2498eb91f321SVaclav Hapla PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2); 2499eb91f321SVaclav Hapla /* force binary viewer to load .info file if it has not yet done so */ 25009566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 25019566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary)); 250287d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 25039566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERHDF5, &ishdf5)); 250487d5ce66SSatish Balay #endif 2505eb91f321SVaclav Hapla if (isbinary) { 25069566063dSJacob Faibussowitsch PetscCall(MatLoad_Dense_Binary(newMat,viewer)); 2507eb91f321SVaclav Hapla #if defined(PETSC_HAVE_HDF5) 250887d5ce66SSatish Balay } else if (ishdf5) { 25099566063dSJacob Faibussowitsch PetscCall(MatLoad_Dense_HDF5(newMat,viewer)); 2510eb91f321SVaclav Hapla #endif 251198921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)newMat),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)newMat)->type_name); 2512eb91f321SVaclav Hapla PetscFunctionReturn(0); 2513eb91f321SVaclav Hapla } 2514eb91f321SVaclav Hapla 25156718818eSStefano Zampini static PetscErrorCode MatEqual_MPIDense(Mat A,Mat B,PetscBool *flag) 25166e4ee0c6SHong Zhang { 25176e4ee0c6SHong Zhang Mat_MPIDense *matB = (Mat_MPIDense*)B->data,*matA = (Mat_MPIDense*)A->data; 25186e4ee0c6SHong Zhang Mat a,b; 251990ace30eSBarry Smith 25206e4ee0c6SHong Zhang PetscFunctionBegin; 25216e4ee0c6SHong Zhang a = matA->A; 25226e4ee0c6SHong Zhang b = matB->A; 25232cf15c64SPierre Jolivet PetscCall(MatEqual(a,b,flag)); 25242cf15c64SPierre Jolivet PetscCall(MPIU_Allreduce(MPI_IN_PLACE,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A))); 25256e4ee0c6SHong Zhang PetscFunctionReturn(0); 25266e4ee0c6SHong Zhang } 252790ace30eSBarry Smith 25286718818eSStefano Zampini PetscErrorCode MatDestroy_MatTransMatMult_MPIDense_MPIDense(void *data) 2529baa3c1c6SHong Zhang { 25306718818eSStefano Zampini Mat_TransMatMultDense *atb = (Mat_TransMatMultDense *)data; 2531baa3c1c6SHong Zhang 2532baa3c1c6SHong Zhang PetscFunctionBegin; 25339566063dSJacob Faibussowitsch PetscCall(PetscFree2(atb->sendbuf,atb->recvcounts)); 25349566063dSJacob Faibussowitsch PetscCall(MatDestroy(&atb->atb)); 25359566063dSJacob Faibussowitsch PetscCall(PetscFree(atb)); 2536baa3c1c6SHong Zhang PetscFunctionReturn(0); 2537baa3c1c6SHong Zhang } 2538baa3c1c6SHong Zhang 25396718818eSStefano Zampini PetscErrorCode MatDestroy_MatMatTransMult_MPIDense_MPIDense(void *data) 2540cc48ffa7SToby Isaac { 25416718818eSStefano Zampini Mat_MatTransMultDense *abt = (Mat_MatTransMultDense *)data; 2542cc48ffa7SToby Isaac 2543cc48ffa7SToby Isaac PetscFunctionBegin; 25449566063dSJacob Faibussowitsch PetscCall(PetscFree2(abt->buf[0],abt->buf[1])); 25459566063dSJacob Faibussowitsch PetscCall(PetscFree2(abt->recvcounts,abt->recvdispls)); 25469566063dSJacob Faibussowitsch PetscCall(PetscFree(abt)); 2547cc48ffa7SToby Isaac PetscFunctionReturn(0); 2548cc48ffa7SToby Isaac } 2549cc48ffa7SToby Isaac 25506718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 2551cb20be35SHong Zhang { 2552baa3c1c6SHong Zhang Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 25536718818eSStefano Zampini Mat_TransMatMultDense *atb; 2554cb20be35SHong Zhang MPI_Comm comm; 25556718818eSStefano Zampini PetscMPIInt size,*recvcounts; 25566718818eSStefano Zampini PetscScalar *carray,*sendbuf; 2557637a0070SStefano Zampini const PetscScalar *atbarray; 2558a1f9a5e6SStefano Zampini PetscInt i,cN=C->cmap->N,proc,k,j,lda; 2559e68c0b26SHong Zhang const PetscInt *ranges; 2560cb20be35SHong Zhang 2561cb20be35SHong Zhang PetscFunctionBegin; 25626718818eSStefano Zampini MatCheckProduct(C,3); 25635f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 25646718818eSStefano Zampini atb = (Mat_TransMatMultDense *)C->product->data; 25656718818eSStefano Zampini recvcounts = atb->recvcounts; 25666718818eSStefano Zampini sendbuf = atb->sendbuf; 25676718818eSStefano Zampini 25689566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A,&comm)); 25699566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 2570e68c0b26SHong Zhang 2571c5ef1628SHong Zhang /* compute atbarray = aseq^T * bseq */ 25729566063dSJacob Faibussowitsch PetscCall(MatTransposeMatMult(a->A,b->A,atb->atb ? MAT_REUSE_MATRIX : MAT_INITIAL_MATRIX,PETSC_DEFAULT,&atb->atb)); 2573cb20be35SHong Zhang 25749566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRanges(C,&ranges)); 2575cb20be35SHong Zhang 2576660d5466SHong Zhang /* arrange atbarray into sendbuf */ 25779566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(atb->atb,&atbarray)); 25789566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(atb->atb,&lda)); 2579637a0070SStefano Zampini for (proc=0, k=0; proc<size; proc++) { 2580baa3c1c6SHong Zhang for (j=0; j<cN; j++) { 2581a1f9a5e6SStefano Zampini for (i=ranges[proc]; i<ranges[proc+1]; i++) sendbuf[k++] = atbarray[i+j*lda]; 2582cb20be35SHong Zhang } 2583cb20be35SHong Zhang } 25849566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(atb->atb,&atbarray)); 2585637a0070SStefano Zampini 2586c5ef1628SHong Zhang /* sum all atbarray to local values of C */ 25879566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(c->A,&carray)); 25889566063dSJacob Faibussowitsch PetscCallMPI(MPI_Reduce_scatter(sendbuf,carray,recvcounts,MPIU_SCALAR,MPIU_SUM,comm)); 25899566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(c->A,&carray)); 25909566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY)); 25919566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY)); 2592cb20be35SHong Zhang PetscFunctionReturn(0); 2593cb20be35SHong Zhang } 2594cb20be35SHong Zhang 25956718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat C) 2596cb20be35SHong Zhang { 2597cb20be35SHong Zhang MPI_Comm comm; 2598baa3c1c6SHong Zhang PetscMPIInt size; 2599660d5466SHong Zhang PetscInt cm=A->cmap->n,cM,cN=B->cmap->N; 2600baa3c1c6SHong Zhang Mat_TransMatMultDense *atb; 26016718818eSStefano Zampini PetscBool cisdense; 26020acaeb71SStefano Zampini PetscInt i; 26030acaeb71SStefano Zampini const PetscInt *ranges; 2604cb20be35SHong Zhang 2605cb20be35SHong Zhang PetscFunctionBegin; 26066718818eSStefano Zampini MatCheckProduct(C,3); 26075f80ce2aSJacob Faibussowitsch PetscCheck(!C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty"); 26089566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A,&comm)); 2609cb20be35SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) { 261098921bdaSJacob Faibussowitsch SETERRQ(comm,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != B (%" PetscInt_FMT ",%" PetscInt_FMT ")",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 2611cb20be35SHong Zhang } 2612cb20be35SHong Zhang 26134222ddf1SHong Zhang /* create matrix product C */ 26149566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C,cm,B->cmap->n,A->cmap->N,B->cmap->N)); 26159566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompareAny((PetscObject)C,&cisdense,MATMPIDENSE,MATMPIDENSECUDA,"")); 26166718818eSStefano Zampini if (!cisdense) { 26179566063dSJacob Faibussowitsch PetscCall(MatSetType(C,((PetscObject)A)->type_name)); 26186718818eSStefano Zampini } 26199566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 2620baa3c1c6SHong Zhang 26214222ddf1SHong Zhang /* create data structure for reuse C */ 26229566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 26239566063dSJacob Faibussowitsch PetscCall(PetscNew(&atb)); 26244222ddf1SHong Zhang cM = C->rmap->N; 26259566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(cM*cN,&atb->sendbuf,size,&atb->recvcounts)); 26269566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRanges(C,&ranges)); 26270acaeb71SStefano Zampini for (i=0; i<size; i++) atb->recvcounts[i] = (ranges[i+1] - ranges[i])*cN; 2628baa3c1c6SHong Zhang 26296718818eSStefano Zampini C->product->data = atb; 26306718818eSStefano Zampini C->product->destroy = MatDestroy_MatTransMatMult_MPIDense_MPIDense; 2631cb20be35SHong Zhang PetscFunctionReturn(0); 2632cb20be35SHong Zhang } 2633cb20be35SHong Zhang 26344222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat A, Mat B, PetscReal fill, Mat C) 2635cb20be35SHong Zhang { 2636cc48ffa7SToby Isaac MPI_Comm comm; 2637cc48ffa7SToby Isaac PetscMPIInt i, size; 2638cc48ffa7SToby Isaac PetscInt maxRows, bufsiz; 2639cc48ffa7SToby Isaac PetscMPIInt tag; 26404222ddf1SHong Zhang PetscInt alg; 2641cc48ffa7SToby Isaac Mat_MatTransMultDense *abt; 26424222ddf1SHong Zhang Mat_Product *product = C->product; 26434222ddf1SHong Zhang PetscBool flg; 2644cc48ffa7SToby Isaac 2645cc48ffa7SToby Isaac PetscFunctionBegin; 26466718818eSStefano Zampini MatCheckProduct(C,4); 26475f80ce2aSJacob Faibussowitsch PetscCheck(!C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty"); 26484222ddf1SHong Zhang /* check local size of A and B */ 26495f80ce2aSJacob Faibussowitsch PetscCheck(A->cmap->n == B->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local column dimensions are incompatible, A (%" PetscInt_FMT ") != B (%" PetscInt_FMT ")",A->cmap->n,B->cmap->n); 2650cc48ffa7SToby Isaac 26519566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg,"allgatherv",&flg)); 2652637a0070SStefano Zampini alg = flg ? 0 : 1; 2653cc48ffa7SToby Isaac 26544222ddf1SHong Zhang /* setup matrix product C */ 26559566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C,A->rmap->n,B->rmap->n,A->rmap->N,B->rmap->N)); 26569566063dSJacob Faibussowitsch PetscCall(MatSetType(C,MATMPIDENSE)); 26579566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 26589566063dSJacob Faibussowitsch PetscCall(PetscObjectGetNewTag((PetscObject)C,&tag)); 26594222ddf1SHong Zhang 26604222ddf1SHong Zhang /* create data structure for reuse C */ 26619566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C,&comm)); 26629566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 26639566063dSJacob Faibussowitsch PetscCall(PetscNew(&abt)); 2664cc48ffa7SToby Isaac abt->tag = tag; 2665faa55883SToby Isaac abt->alg = alg; 2666faa55883SToby Isaac switch (alg) { 26674222ddf1SHong Zhang case 1: /* alg: "cyclic" */ 2668cc48ffa7SToby Isaac for (maxRows = 0, i = 0; i < size; i++) maxRows = PetscMax(maxRows, (B->rmap->range[i + 1] - B->rmap->range[i])); 2669cc48ffa7SToby Isaac bufsiz = A->cmap->N * maxRows; 26709566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(bufsiz,&(abt->buf[0]),bufsiz,&(abt->buf[1]))); 2671faa55883SToby Isaac break; 26724222ddf1SHong Zhang default: /* alg: "allgatherv" */ 26739566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(B->rmap->n * B->cmap->N, &(abt->buf[0]), B->rmap->N * B->cmap->N, &(abt->buf[1]))); 26749566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(size,&(abt->recvcounts),size+1,&(abt->recvdispls))); 2675faa55883SToby Isaac for (i = 0; i <= size; i++) abt->recvdispls[i] = B->rmap->range[i] * A->cmap->N; 2676faa55883SToby Isaac for (i = 0; i < size; i++) abt->recvcounts[i] = abt->recvdispls[i + 1] - abt->recvdispls[i]; 2677faa55883SToby Isaac break; 2678faa55883SToby Isaac } 2679cc48ffa7SToby Isaac 26806718818eSStefano Zampini C->product->data = abt; 26816718818eSStefano Zampini C->product->destroy = MatDestroy_MatMatTransMult_MPIDense_MPIDense; 26824222ddf1SHong Zhang C->ops->mattransposemultnumeric = MatMatTransposeMultNumeric_MPIDense_MPIDense; 2683cc48ffa7SToby Isaac PetscFunctionReturn(0); 2684cc48ffa7SToby Isaac } 2685cc48ffa7SToby Isaac 2686faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(Mat A, Mat B, Mat C) 2687cc48ffa7SToby Isaac { 2688cc48ffa7SToby Isaac Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 26896718818eSStefano Zampini Mat_MatTransMultDense *abt; 2690cc48ffa7SToby Isaac MPI_Comm comm; 2691cc48ffa7SToby Isaac PetscMPIInt rank,size, sendsiz, recvsiz, sendto, recvfrom, recvisfrom; 2692f4259b30SLisandro Dalcin PetscScalar *sendbuf, *recvbuf=NULL, *cv; 2693cc48ffa7SToby Isaac PetscInt i,cK=A->cmap->N,k,j,bn; 2694cc48ffa7SToby Isaac PetscScalar _DOne=1.0,_DZero=0.0; 2695637a0070SStefano Zampini const PetscScalar *av,*bv; 269623fff9afSBarry Smith PetscBLASInt cm, cn, ck, alda, blda = 0, clda; 2697cc48ffa7SToby Isaac MPI_Request reqs[2]; 2698cc48ffa7SToby Isaac const PetscInt *ranges; 2699cc48ffa7SToby Isaac 2700cc48ffa7SToby Isaac PetscFunctionBegin; 27016718818eSStefano Zampini MatCheckProduct(C,3); 27025f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 27036718818eSStefano Zampini abt = (Mat_MatTransMultDense*)C->product->data; 27049566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C,&comm)); 27059566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm,&rank)); 27069566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 27079566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A,&av)); 27089566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(b->A,&bv)); 27099566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(c->A,&cv)); 27109566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&i)); 27119566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i,&alda)); 27129566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(b->A,&i)); 27139566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i,&blda)); 27149566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(c->A,&i)); 27159566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i,&clda)); 27169566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRanges(B,&ranges)); 2717cc48ffa7SToby Isaac bn = B->rmap->n; 2718637a0070SStefano Zampini if (blda == bn) { 2719637a0070SStefano Zampini sendbuf = (PetscScalar*)bv; 2720cc48ffa7SToby Isaac } else { 2721cc48ffa7SToby Isaac sendbuf = abt->buf[0]; 2722cc48ffa7SToby Isaac for (k = 0, i = 0; i < cK; i++) { 2723cc48ffa7SToby Isaac for (j = 0; j < bn; j++, k++) { 2724637a0070SStefano Zampini sendbuf[k] = bv[i * blda + j]; 2725cc48ffa7SToby Isaac } 2726cc48ffa7SToby Isaac } 2727cc48ffa7SToby Isaac } 2728cc48ffa7SToby Isaac if (size > 1) { 2729cc48ffa7SToby Isaac sendto = (rank + size - 1) % size; 2730cc48ffa7SToby Isaac recvfrom = (rank + size + 1) % size; 2731cc48ffa7SToby Isaac } else { 2732cc48ffa7SToby Isaac sendto = recvfrom = 0; 2733cc48ffa7SToby Isaac } 27349566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(cK,&ck)); 27359566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(c->A->rmap->n,&cm)); 2736cc48ffa7SToby Isaac recvisfrom = rank; 2737cc48ffa7SToby Isaac for (i = 0; i < size; i++) { 2738cc48ffa7SToby Isaac /* we have finished receiving in sending, bufs can be read/modified */ 2739cc48ffa7SToby Isaac PetscInt nextrecvisfrom = (recvisfrom + 1) % size; /* which process the next recvbuf will originate on */ 2740cc48ffa7SToby Isaac PetscInt nextbn = ranges[nextrecvisfrom + 1] - ranges[nextrecvisfrom]; 2741cc48ffa7SToby Isaac 2742cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2743cc48ffa7SToby Isaac /* start the cyclic sends from sendbuf, to recvbuf (which will switch to sendbuf) */ 2744cc48ffa7SToby Isaac sendsiz = cK * bn; 2745cc48ffa7SToby Isaac recvsiz = cK * nextbn; 2746cc48ffa7SToby Isaac recvbuf = (i & 1) ? abt->buf[0] : abt->buf[1]; 27479566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(sendbuf, sendsiz, MPIU_SCALAR, sendto, abt->tag, comm, &reqs[0])); 27489566063dSJacob Faibussowitsch PetscCallMPI(MPI_Irecv(recvbuf, recvsiz, MPIU_SCALAR, recvfrom, abt->tag, comm, &reqs[1])); 2749cc48ffa7SToby Isaac } 2750cc48ffa7SToby Isaac 2751cc48ffa7SToby Isaac /* local aseq * sendbuf^T */ 27529566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(ranges[recvisfrom + 1] - ranges[recvisfrom], &cn)); 275350ce3c9cSStefano Zampini if (cm && cn && ck) PetscStackCallBLAS("BLASgemm",BLASgemm_("N","T",&cm,&cn,&ck,&_DOne,av,&alda,sendbuf,&cn,&_DZero,cv + clda * ranges[recvisfrom],&clda)); 2754cc48ffa7SToby Isaac 2755cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2756cc48ffa7SToby Isaac /* wait for the sends and receives to complete, swap sendbuf and recvbuf */ 27579566063dSJacob Faibussowitsch PetscCallMPI(MPI_Waitall(2, reqs, MPI_STATUSES_IGNORE)); 2758cc48ffa7SToby Isaac } 2759cc48ffa7SToby Isaac bn = nextbn; 2760cc48ffa7SToby Isaac recvisfrom = nextrecvisfrom; 2761cc48ffa7SToby Isaac sendbuf = recvbuf; 2762cc48ffa7SToby Isaac } 27639566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A,&av)); 27649566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(b->A,&bv)); 27659566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(c->A,&cv)); 27669566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY)); 27679566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY)); 2768cc48ffa7SToby Isaac PetscFunctionReturn(0); 2769cc48ffa7SToby Isaac } 2770cc48ffa7SToby Isaac 2771faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(Mat A, Mat B, Mat C) 2772faa55883SToby Isaac { 2773faa55883SToby Isaac Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 27746718818eSStefano Zampini Mat_MatTransMultDense *abt; 2775faa55883SToby Isaac MPI_Comm comm; 2776637a0070SStefano Zampini PetscMPIInt size; 2777637a0070SStefano Zampini PetscScalar *cv, *sendbuf, *recvbuf; 2778637a0070SStefano Zampini const PetscScalar *av,*bv; 2779637a0070SStefano Zampini PetscInt blda,i,cK=A->cmap->N,k,j,bn; 2780faa55883SToby Isaac PetscScalar _DOne=1.0,_DZero=0.0; 2781637a0070SStefano Zampini PetscBLASInt cm, cn, ck, alda, clda; 2782faa55883SToby Isaac 2783faa55883SToby Isaac PetscFunctionBegin; 27846718818eSStefano Zampini MatCheckProduct(C,3); 27855f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 27866718818eSStefano Zampini abt = (Mat_MatTransMultDense*)C->product->data; 27879566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A,&comm)); 27889566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 27899566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(a->A,&av)); 27909566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(b->A,&bv)); 27919566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(c->A,&cv)); 27929566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(a->A,&i)); 27939566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i,&alda)); 27949566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(b->A,&blda)); 27959566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(c->A,&i)); 27969566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(i,&clda)); 2797faa55883SToby Isaac /* copy transpose of B into buf[0] */ 2798faa55883SToby Isaac bn = B->rmap->n; 2799faa55883SToby Isaac sendbuf = abt->buf[0]; 2800faa55883SToby Isaac recvbuf = abt->buf[1]; 2801faa55883SToby Isaac for (k = 0, j = 0; j < bn; j++) { 2802faa55883SToby Isaac for (i = 0; i < cK; i++, k++) { 2803637a0070SStefano Zampini sendbuf[k] = bv[i * blda + j]; 2804faa55883SToby Isaac } 2805faa55883SToby Isaac } 28069566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(b->A,&bv)); 28079566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgatherv(sendbuf, bn * cK, MPIU_SCALAR, recvbuf, abt->recvcounts, abt->recvdispls, MPIU_SCALAR, comm)); 28089566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(cK,&ck)); 28099566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(c->A->rmap->n,&cm)); 28109566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(c->A->cmap->n,&cn)); 281150ce3c9cSStefano Zampini if (cm && cn && ck) PetscStackCallBLAS("BLASgemm",BLASgemm_("N","N",&cm,&cn,&ck,&_DOne,av,&alda,recvbuf,&ck,&_DZero,cv,&clda)); 28129566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(a->A,&av)); 28139566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(b->A,&bv)); 28149566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(c->A,&cv)); 28159566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY)); 28169566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY)); 2817faa55883SToby Isaac PetscFunctionReturn(0); 2818faa55883SToby Isaac } 2819faa55883SToby Isaac 2820faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat A, Mat B, Mat C) 2821faa55883SToby Isaac { 28226718818eSStefano Zampini Mat_MatTransMultDense *abt; 2823faa55883SToby Isaac 2824faa55883SToby Isaac PetscFunctionBegin; 28256718818eSStefano Zampini MatCheckProduct(C,3); 28265f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 28276718818eSStefano Zampini abt = (Mat_MatTransMultDense*)C->product->data; 2828faa55883SToby Isaac switch (abt->alg) { 2829faa55883SToby Isaac case 1: 28309566063dSJacob Faibussowitsch PetscCall(MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(A, B, C)); 2831faa55883SToby Isaac break; 2832faa55883SToby Isaac default: 28339566063dSJacob Faibussowitsch PetscCall(MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(A, B, C)); 2834faa55883SToby Isaac break; 2835faa55883SToby Isaac } 2836faa55883SToby Isaac PetscFunctionReturn(0); 2837faa55883SToby Isaac } 2838faa55883SToby Isaac 28396718818eSStefano Zampini PetscErrorCode MatDestroy_MatMatMult_MPIDense_MPIDense(void *data) 2840320f2790SHong Zhang { 28416718818eSStefano Zampini Mat_MatMultDense *ab = (Mat_MatMultDense*)data; 2842320f2790SHong Zhang 2843320f2790SHong Zhang PetscFunctionBegin; 28449566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ab->Ce)); 28459566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ab->Ae)); 28469566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ab->Be)); 28479566063dSJacob Faibussowitsch PetscCall(PetscFree(ab)); 2848320f2790SHong Zhang PetscFunctionReturn(0); 2849320f2790SHong Zhang } 2850320f2790SHong Zhang 28515242a7b1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 2852320f2790SHong Zhang PetscErrorCode MatMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 2853320f2790SHong Zhang { 28546718818eSStefano Zampini Mat_MatMultDense *ab; 2855320f2790SHong Zhang 2856320f2790SHong Zhang PetscFunctionBegin; 28576718818eSStefano Zampini MatCheckProduct(C,3); 28585f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Missing product data"); 28596718818eSStefano Zampini ab = (Mat_MatMultDense*)C->product->data; 28609566063dSJacob Faibussowitsch PetscCall(MatConvert_MPIDense_Elemental(A,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Ae)); 28619566063dSJacob Faibussowitsch PetscCall(MatConvert_MPIDense_Elemental(B,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Be)); 28629566063dSJacob Faibussowitsch PetscCall(MatMatMultNumeric_Elemental(ab->Ae,ab->Be,ab->Ce)); 28639566063dSJacob Faibussowitsch PetscCall(MatConvert(ab->Ce,MATMPIDENSE,MAT_REUSE_MATRIX,&C)); 2864320f2790SHong Zhang PetscFunctionReturn(0); 2865320f2790SHong Zhang } 2866320f2790SHong Zhang 28676718818eSStefano Zampini static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat C) 2868320f2790SHong Zhang { 2869320f2790SHong Zhang Mat Ae,Be,Ce; 2870320f2790SHong Zhang Mat_MatMultDense *ab; 2871320f2790SHong Zhang 2872320f2790SHong Zhang PetscFunctionBegin; 28736718818eSStefano Zampini MatCheckProduct(C,4); 28745f80ce2aSJacob Faibussowitsch PetscCheck(!C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty"); 28754222ddf1SHong Zhang /* check local size of A and B */ 2876320f2790SHong Zhang if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend) { 287798921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != B (%" PetscInt_FMT ",%" PetscInt_FMT ")",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 2878320f2790SHong Zhang } 2879320f2790SHong Zhang 28804222ddf1SHong Zhang /* create elemental matrices Ae and Be */ 28819566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &Ae)); 28829566063dSJacob Faibussowitsch PetscCall(MatSetSizes(Ae,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N)); 28839566063dSJacob Faibussowitsch PetscCall(MatSetType(Ae,MATELEMENTAL)); 28849566063dSJacob Faibussowitsch PetscCall(MatSetUp(Ae)); 28859566063dSJacob Faibussowitsch PetscCall(MatSetOption(Ae,MAT_ROW_ORIENTED,PETSC_FALSE)); 2886320f2790SHong Zhang 28879566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)B), &Be)); 28889566063dSJacob Faibussowitsch PetscCall(MatSetSizes(Be,PETSC_DECIDE,PETSC_DECIDE,B->rmap->N,B->cmap->N)); 28899566063dSJacob Faibussowitsch PetscCall(MatSetType(Be,MATELEMENTAL)); 28909566063dSJacob Faibussowitsch PetscCall(MatSetUp(Be)); 28919566063dSJacob Faibussowitsch PetscCall(MatSetOption(Be,MAT_ROW_ORIENTED,PETSC_FALSE)); 2892320f2790SHong Zhang 28934222ddf1SHong Zhang /* compute symbolic Ce = Ae*Be */ 28949566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)C),&Ce)); 28959566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_Elemental(Ae,Be,fill,Ce)); 28964222ddf1SHong Zhang 28974222ddf1SHong Zhang /* setup C */ 28989566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C,A->rmap->n,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE)); 28999566063dSJacob Faibussowitsch PetscCall(MatSetType(C,MATDENSE)); 29009566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 2901320f2790SHong Zhang 2902320f2790SHong Zhang /* create data structure for reuse Cdense */ 29039566063dSJacob Faibussowitsch PetscCall(PetscNew(&ab)); 2904320f2790SHong Zhang ab->Ae = Ae; 2905320f2790SHong Zhang ab->Be = Be; 2906320f2790SHong Zhang ab->Ce = Ce; 29076718818eSStefano Zampini 29086718818eSStefano Zampini C->product->data = ab; 29096718818eSStefano Zampini C->product->destroy = MatDestroy_MatMatMult_MPIDense_MPIDense; 29104222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIDense; 2911320f2790SHong Zhang PetscFunctionReturn(0); 2912320f2790SHong Zhang } 29134222ddf1SHong Zhang #endif 29144222ddf1SHong Zhang /* ----------------------------------------------- */ 29154222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 29164222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_AB(Mat C) 2917320f2790SHong Zhang { 2918320f2790SHong Zhang PetscFunctionBegin; 29194222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIDense; 29204222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 2921320f2790SHong Zhang PetscFunctionReturn(0); 2922320f2790SHong Zhang } 29235242a7b1SHong Zhang #endif 292486aefd0dSHong Zhang 29254222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_AtB(Mat C) 29264222ddf1SHong Zhang { 29274222ddf1SHong Zhang Mat_Product *product = C->product; 29284222ddf1SHong Zhang Mat A = product->A,B=product->B; 29294222ddf1SHong Zhang 29304222ddf1SHong Zhang PetscFunctionBegin; 29314222ddf1SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) 293298921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 29336718818eSStefano Zampini C->ops->transposematmultsymbolic = MatTransposeMatMultSymbolic_MPIDense_MPIDense; 29346718818eSStefano Zampini C->ops->productsymbolic = MatProductSymbolic_AtB; 29354222ddf1SHong Zhang PetscFunctionReturn(0); 29364222ddf1SHong Zhang } 29374222ddf1SHong Zhang 29384222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_ABt(Mat C) 29394222ddf1SHong Zhang { 29404222ddf1SHong Zhang Mat_Product *product = C->product; 29414222ddf1SHong Zhang const char *algTypes[2] = {"allgatherv","cyclic"}; 29424222ddf1SHong Zhang PetscInt alg,nalg = 2; 29434222ddf1SHong Zhang PetscBool flg = PETSC_FALSE; 29444222ddf1SHong Zhang 29454222ddf1SHong Zhang PetscFunctionBegin; 29464222ddf1SHong Zhang /* Set default algorithm */ 29474222ddf1SHong Zhang alg = 0; /* default is allgatherv */ 29489566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg,"default",&flg)); 29494222ddf1SHong Zhang if (flg) { 29509566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg])); 29514222ddf1SHong Zhang } 29524222ddf1SHong Zhang 29534222ddf1SHong Zhang /* Get runtime option */ 29544222ddf1SHong Zhang if (product->api_user) { 2955d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatMatTransposeMult","Mat"); 29569566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-matmattransmult_mpidense_mpidense_via","Algorithmic approach","MatMatTransposeMult",algTypes,nalg,algTypes[alg],&alg,&flg)); 2957d0609cedSBarry Smith PetscOptionsEnd(); 29584222ddf1SHong Zhang } else { 2959d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatProduct_ABt","Mat"); 29609566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm","Algorithmic approach","MatProduct_ABt",algTypes,nalg,algTypes[alg],&alg,&flg)); 2961d0609cedSBarry Smith PetscOptionsEnd(); 29624222ddf1SHong Zhang } 29634222ddf1SHong Zhang if (flg) { 29649566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg])); 29654222ddf1SHong Zhang } 29664222ddf1SHong Zhang 29674222ddf1SHong Zhang C->ops->mattransposemultsymbolic = MatMatTransposeMultSymbolic_MPIDense_MPIDense; 29684222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_ABt; 29694222ddf1SHong Zhang PetscFunctionReturn(0); 29704222ddf1SHong Zhang } 29714222ddf1SHong Zhang 29724222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense(Mat C) 29734222ddf1SHong Zhang { 29744222ddf1SHong Zhang Mat_Product *product = C->product; 29754222ddf1SHong Zhang 29764222ddf1SHong Zhang PetscFunctionBegin; 29774222ddf1SHong Zhang switch (product->type) { 29784222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 29794222ddf1SHong Zhang case MATPRODUCT_AB: 29809566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIDense_AB(C)); 29814222ddf1SHong Zhang break; 29824222ddf1SHong Zhang #endif 29834222ddf1SHong Zhang case MATPRODUCT_AtB: 29849566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIDense_AtB(C)); 29854222ddf1SHong Zhang break; 29864222ddf1SHong Zhang case MATPRODUCT_ABt: 29879566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIDense_ABt(C)); 29884222ddf1SHong Zhang break; 29896718818eSStefano Zampini default: 29906718818eSStefano Zampini break; 29914222ddf1SHong Zhang } 29924222ddf1SHong Zhang PetscFunctionReturn(0); 29934222ddf1SHong Zhang } 2994