1be1d678aSKris Buschelman 2ed3cc1f0SBarry Smith /* 3ed3cc1f0SBarry Smith Basic functions for basic parallel dense matrices. 4ed3cc1f0SBarry Smith */ 5ed3cc1f0SBarry Smith 6c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h> /*I "petscmat.h" I*/ 78949adfdSHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 8baa3c1c6SHong Zhang #include <petscblaslapack.h> 98965ea79SLois Curfman McInnes 10ab92ecdeSBarry Smith /*@ 11ab92ecdeSBarry Smith 12ab92ecdeSBarry Smith MatDenseGetLocalMatrix - For a MATMPIDENSE or MATSEQDENSE matrix returns the sequential 13ab92ecdeSBarry Smith matrix that represents the operator. For sequential matrices it returns itself. 14ab92ecdeSBarry Smith 15ab92ecdeSBarry Smith Input Parameter: 16ab92ecdeSBarry Smith . A - the Seq or MPI dense matrix 17ab92ecdeSBarry Smith 18ab92ecdeSBarry Smith Output Parameter: 19ab92ecdeSBarry Smith . B - the inner matrix 20ab92ecdeSBarry Smith 218e6c10adSSatish Balay Level: intermediate 228e6c10adSSatish Balay 23ab92ecdeSBarry Smith @*/ 24ab92ecdeSBarry Smith PetscErrorCode MatDenseGetLocalMatrix(Mat A,Mat *B) 25ab92ecdeSBarry Smith { 26ab92ecdeSBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 27ab92ecdeSBarry Smith PetscErrorCode ierr; 28ace3abfcSBarry Smith PetscBool flg; 29ab92ecdeSBarry Smith 30ab92ecdeSBarry Smith PetscFunctionBegin; 31d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 32d5ea218eSStefano Zampini PetscValidPointer(B,2); 33f140bc17SStefano Zampini ierr = PetscObjectBaseTypeCompare((PetscObject)A,MATMPIDENSE,&flg);CHKERRQ(ierr); 342205254eSKarl Rupp if (flg) *B = mat->A; 35f140bc17SStefano Zampini else { 36f140bc17SStefano Zampini ierr = PetscObjectBaseTypeCompare((PetscObject)A,MATSEQDENSE,&flg);CHKERRQ(ierr); 37f140bc17SStefano Zampini if (!flg) SETERRQ1(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Not for matrix type %s",((PetscObject)A)->type_name); 38f140bc17SStefano Zampini *B = A; 39f140bc17SStefano Zampini } 40ab92ecdeSBarry Smith PetscFunctionReturn(0); 41ab92ecdeSBarry Smith } 42ab92ecdeSBarry Smith 43a76f77c3SStefano Zampini PetscErrorCode MatCopy_MPIDense(Mat A, Mat B, MatStructure s) 44a76f77c3SStefano Zampini { 45a76f77c3SStefano Zampini Mat_MPIDense *Amat = (Mat_MPIDense*)A->data; 46a76f77c3SStefano Zampini Mat_MPIDense *Bmat = (Mat_MPIDense*)B->data; 47a76f77c3SStefano Zampini PetscErrorCode ierr; 48a76f77c3SStefano Zampini 49a76f77c3SStefano Zampini PetscFunctionBegin; 50a76f77c3SStefano Zampini ierr = MatCopy(Amat->A,Bmat->A,s);CHKERRQ(ierr); 51a76f77c3SStefano Zampini PetscFunctionReturn(0); 52a76f77c3SStefano Zampini } 53a76f77c3SStefano Zampini 54ba8c8a56SBarry Smith PetscErrorCode MatGetRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 55ba8c8a56SBarry Smith { 56ba8c8a56SBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 57ba8c8a56SBarry Smith PetscErrorCode ierr; 58d0f46423SBarry Smith PetscInt lrow,rstart = A->rmap->rstart,rend = A->rmap->rend; 59ba8c8a56SBarry Smith 60ba8c8a56SBarry Smith PetscFunctionBegin; 61e7e72b3dSBarry Smith if (row < rstart || row >= rend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows"); 62ba8c8a56SBarry Smith lrow = row - rstart; 63ba8c8a56SBarry Smith ierr = MatGetRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v);CHKERRQ(ierr); 64ba8c8a56SBarry Smith PetscFunctionReturn(0); 65ba8c8a56SBarry Smith } 66ba8c8a56SBarry Smith 67637a0070SStefano Zampini PetscErrorCode MatRestoreRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 68ba8c8a56SBarry Smith { 69637a0070SStefano Zampini Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 70ba8c8a56SBarry Smith PetscErrorCode ierr; 71637a0070SStefano Zampini PetscInt lrow,rstart = A->rmap->rstart,rend = A->rmap->rend; 72ba8c8a56SBarry Smith 73ba8c8a56SBarry Smith PetscFunctionBegin; 74637a0070SStefano Zampini if (row < rstart || row >= rend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows"); 75637a0070SStefano Zampini lrow = row - rstart; 76637a0070SStefano Zampini ierr = MatRestoreRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v);CHKERRQ(ierr); 77ba8c8a56SBarry Smith PetscFunctionReturn(0); 78ba8c8a56SBarry Smith } 79ba8c8a56SBarry Smith 8011bd1e4dSLisandro Dalcin PetscErrorCode MatGetDiagonalBlock_MPIDense(Mat A,Mat *a) 810de54da6SSatish Balay { 820de54da6SSatish Balay Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 836849ba73SBarry Smith PetscErrorCode ierr; 84d0f46423SBarry Smith PetscInt m = A->rmap->n,rstart = A->rmap->rstart; 8587828ca2SBarry Smith PetscScalar *array; 860de54da6SSatish Balay MPI_Comm comm; 874b6ae80fSStefano Zampini PetscBool flg; 8811bd1e4dSLisandro Dalcin Mat B; 890de54da6SSatish Balay 900de54da6SSatish Balay PetscFunctionBegin; 914b6ae80fSStefano Zampini ierr = MatHasCongruentLayouts(A,&flg);CHKERRQ(ierr); 924b6ae80fSStefano Zampini if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only square matrices supported."); 9311bd1e4dSLisandro Dalcin ierr = PetscObjectQuery((PetscObject)A,"DiagonalBlock",(PetscObject*)&B);CHKERRQ(ierr); 94616b8fbbSStefano Zampini if (!B) { /* This should use MatDenseGetSubMatrix (not create), but we would need a call like MatRestoreDiagonalBlock */ 954b6ae80fSStefano Zampini 964b6ae80fSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)mdn->A,MATSEQDENSECUDA,&flg);CHKERRQ(ierr); 974b6ae80fSStefano Zampini if (flg) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Not coded for %s. Send an email to petsc-dev@mcs.anl.gov to request this feature",MATSEQDENSECUDA); 980de54da6SSatish Balay ierr = PetscObjectGetComm((PetscObject)(mdn->A),&comm);CHKERRQ(ierr); 9911bd1e4dSLisandro Dalcin ierr = MatCreate(comm,&B);CHKERRQ(ierr); 10011bd1e4dSLisandro Dalcin ierr = MatSetSizes(B,m,m,m,m);CHKERRQ(ierr); 10111bd1e4dSLisandro Dalcin ierr = MatSetType(B,((PetscObject)mdn->A)->type_name);CHKERRQ(ierr); 1024b6ae80fSStefano Zampini ierr = MatDenseGetArrayRead(mdn->A,(const PetscScalar**)&array);CHKERRQ(ierr); 10311bd1e4dSLisandro Dalcin ierr = MatSeqDenseSetPreallocation(B,array+m*rstart);CHKERRQ(ierr); 1044b6ae80fSStefano Zampini ierr = MatDenseRestoreArrayRead(mdn->A,(const PetscScalar**)&array);CHKERRQ(ierr); 10511bd1e4dSLisandro Dalcin ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 10611bd1e4dSLisandro Dalcin ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 10711bd1e4dSLisandro Dalcin ierr = PetscObjectCompose((PetscObject)A,"DiagonalBlock",(PetscObject)B);CHKERRQ(ierr); 10811bd1e4dSLisandro Dalcin *a = B; 10911bd1e4dSLisandro Dalcin ierr = MatDestroy(&B);CHKERRQ(ierr); 1102205254eSKarl Rupp } else *a = B; 1110de54da6SSatish Balay PetscFunctionReturn(0); 1120de54da6SSatish Balay } 1130de54da6SSatish Balay 11413f74950SBarry Smith PetscErrorCode MatSetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],const PetscScalar v[],InsertMode addv) 1158965ea79SLois Curfman McInnes { 11639b7565bSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)mat->data; 117dfbe8321SBarry Smith PetscErrorCode ierr; 118d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 119ace3abfcSBarry Smith PetscBool roworiented = A->roworiented; 1208965ea79SLois Curfman McInnes 1213a40ed3dSBarry Smith PetscFunctionBegin; 1228965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 1235ef9f2a5SBarry Smith if (idxm[i] < 0) continue; 124e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 1258965ea79SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 1268965ea79SLois Curfman McInnes row = idxm[i] - rstart; 12739b7565bSBarry Smith if (roworiented) { 12839b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv);CHKERRQ(ierr); 1293a40ed3dSBarry Smith } else { 1308965ea79SLois Curfman McInnes for (j=0; j<n; j++) { 1315ef9f2a5SBarry Smith if (idxn[j] < 0) continue; 132e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 13339b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv);CHKERRQ(ierr); 13439b7565bSBarry Smith } 1358965ea79SLois Curfman McInnes } 1362205254eSKarl Rupp } else if (!A->donotstash) { 1375080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 13839b7565bSBarry Smith if (roworiented) { 139b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,idxm[i],n,idxn,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 140d36fbae8SSatish Balay } else { 141b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,idxm[i],n,idxn,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 14239b7565bSBarry Smith } 143b49de8d1SLois Curfman McInnes } 144b49de8d1SLois Curfman McInnes } 1453a40ed3dSBarry Smith PetscFunctionReturn(0); 146b49de8d1SLois Curfman McInnes } 147b49de8d1SLois Curfman McInnes 14813f74950SBarry Smith PetscErrorCode MatGetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 149b49de8d1SLois Curfman McInnes { 150b49de8d1SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 151dfbe8321SBarry Smith PetscErrorCode ierr; 152d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 153b49de8d1SLois Curfman McInnes 1543a40ed3dSBarry Smith PetscFunctionBegin; 155b49de8d1SLois Curfman McInnes for (i=0; i<m; i++) { 156e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); */ 157e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 158b49de8d1SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 159b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 160b49de8d1SLois Curfman McInnes for (j=0; j<n; j++) { 161e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); */ 162e7e72b3dSBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 163b49de8d1SLois Curfman McInnes ierr = MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j);CHKERRQ(ierr); 164b49de8d1SLois Curfman McInnes } 165e7e72b3dSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 1668965ea79SLois Curfman McInnes } 1673a40ed3dSBarry Smith PetscFunctionReturn(0); 1688965ea79SLois Curfman McInnes } 1698965ea79SLois Curfman McInnes 17049a6ff4bSBarry Smith static PetscErrorCode MatDenseGetLDA_MPIDense(Mat A,PetscInt *lda) 17149a6ff4bSBarry Smith { 17249a6ff4bSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17349a6ff4bSBarry Smith PetscErrorCode ierr; 17449a6ff4bSBarry Smith 17549a6ff4bSBarry Smith PetscFunctionBegin; 17649a6ff4bSBarry Smith ierr = MatDenseGetLDA(a->A,lda);CHKERRQ(ierr); 17749a6ff4bSBarry Smith PetscFunctionReturn(0); 17849a6ff4bSBarry Smith } 17949a6ff4bSBarry Smith 180ad16ce7aSStefano Zampini static PetscErrorCode MatDenseSetLDA_MPIDense(Mat A,PetscInt lda) 181ad16ce7aSStefano Zampini { 182ad16ce7aSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 18317359960SJose E. Roman PetscBool iscuda; 184ad16ce7aSStefano Zampini PetscErrorCode ierr; 185ad16ce7aSStefano Zampini 186ad16ce7aSStefano Zampini PetscFunctionBegin; 18717359960SJose E. Roman if (!a->A) { 18817359960SJose E. Roman if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 18917359960SJose E. Roman ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr); 19017359960SJose E. Roman ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr); 19117359960SJose E. Roman ierr = MatCreate(PETSC_COMM_SELF,&a->A);CHKERRQ(ierr); 19217359960SJose E. Roman ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)a->A);CHKERRQ(ierr); 19317359960SJose E. Roman ierr = MatSetSizes(a->A,A->rmap->n,A->cmap->N,A->rmap->n,A->cmap->N);CHKERRQ(ierr); 19417359960SJose E. Roman ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIDENSECUDA,&iscuda);CHKERRQ(ierr); 19517359960SJose E. Roman ierr = MatSetType(a->A,iscuda ? MATSEQDENSECUDA : MATSEQDENSE);CHKERRQ(ierr); 19617359960SJose E. Roman } 197ad16ce7aSStefano Zampini ierr = MatDenseSetLDA(a->A,lda);CHKERRQ(ierr); 198ad16ce7aSStefano Zampini PetscFunctionReturn(0); 199ad16ce7aSStefano Zampini } 200ad16ce7aSStefano Zampini 201637a0070SStefano Zampini static PetscErrorCode MatDenseGetArray_MPIDense(Mat A,PetscScalar **array) 202ff14e315SSatish Balay { 203ff14e315SSatish Balay Mat_MPIDense *a = (Mat_MPIDense*)A->data; 204dfbe8321SBarry Smith PetscErrorCode ierr; 205ff14e315SSatish Balay 2063a40ed3dSBarry Smith PetscFunctionBegin; 207616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2088c778c55SBarry Smith ierr = MatDenseGetArray(a->A,array);CHKERRQ(ierr); 2093a40ed3dSBarry Smith PetscFunctionReturn(0); 210ff14e315SSatish Balay } 211ff14e315SSatish Balay 212637a0070SStefano Zampini static PetscErrorCode MatDenseGetArrayRead_MPIDense(Mat A,const PetscScalar **array) 2138572280aSBarry Smith { 2148572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 2158572280aSBarry Smith PetscErrorCode ierr; 2168572280aSBarry Smith 2178572280aSBarry Smith PetscFunctionBegin; 218616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2198572280aSBarry Smith ierr = MatDenseGetArrayRead(a->A,array);CHKERRQ(ierr); 2208572280aSBarry Smith PetscFunctionReturn(0); 2218572280aSBarry Smith } 2228572280aSBarry Smith 2236947451fSStefano Zampini static PetscErrorCode MatDenseGetArrayWrite_MPIDense(Mat A,PetscScalar **array) 2246947451fSStefano Zampini { 2256947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 2266947451fSStefano Zampini PetscErrorCode ierr; 2276947451fSStefano Zampini 2286947451fSStefano Zampini PetscFunctionBegin; 229616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2306947451fSStefano Zampini ierr = MatDenseGetArrayWrite(a->A,array);CHKERRQ(ierr); 2316947451fSStefano Zampini PetscFunctionReturn(0); 2326947451fSStefano Zampini } 2336947451fSStefano Zampini 234637a0070SStefano Zampini static PetscErrorCode MatDensePlaceArray_MPIDense(Mat A,const PetscScalar *array) 235d3042a70SBarry Smith { 236d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 237d3042a70SBarry Smith PetscErrorCode ierr; 238d3042a70SBarry Smith 239d3042a70SBarry Smith PetscFunctionBegin; 240616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 241616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 242d3042a70SBarry Smith ierr = MatDensePlaceArray(a->A,array);CHKERRQ(ierr); 243d3042a70SBarry Smith PetscFunctionReturn(0); 244d3042a70SBarry Smith } 245d3042a70SBarry Smith 246d3042a70SBarry Smith static PetscErrorCode MatDenseResetArray_MPIDense(Mat A) 247d3042a70SBarry Smith { 248d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 249d3042a70SBarry Smith PetscErrorCode ierr; 250d3042a70SBarry Smith 251d3042a70SBarry Smith PetscFunctionBegin; 252616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 253616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 254d3042a70SBarry Smith ierr = MatDenseResetArray(a->A);CHKERRQ(ierr); 255d3042a70SBarry Smith PetscFunctionReturn(0); 256d3042a70SBarry Smith } 257d3042a70SBarry Smith 258d5ea218eSStefano Zampini static PetscErrorCode MatDenseReplaceArray_MPIDense(Mat A,const PetscScalar *array) 259d5ea218eSStefano Zampini { 260d5ea218eSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 261d5ea218eSStefano Zampini PetscErrorCode ierr; 262d5ea218eSStefano Zampini 263d5ea218eSStefano Zampini PetscFunctionBegin; 264616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 265616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 266d5ea218eSStefano Zampini ierr = MatDenseReplaceArray(a->A,array);CHKERRQ(ierr); 267d5ea218eSStefano Zampini PetscFunctionReturn(0); 268d5ea218eSStefano Zampini } 269d5ea218eSStefano Zampini 2707dae84e0SHong Zhang static PetscErrorCode MatCreateSubMatrix_MPIDense(Mat A,IS isrow,IS iscol,MatReuse scall,Mat *B) 271ca3fa75bSLois Curfman McInnes { 272ca3fa75bSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data,*newmatd; 2736849ba73SBarry Smith PetscErrorCode ierr; 274637a0070SStefano Zampini PetscInt lda,i,j,rstart,rend,nrows,ncols,Ncols,nlrows,nlcols; 2755d0c19d7SBarry Smith const PetscInt *irow,*icol; 276637a0070SStefano Zampini const PetscScalar *v; 277637a0070SStefano Zampini PetscScalar *bv; 278ca3fa75bSLois Curfman McInnes Mat newmat; 2794aa3045dSJed Brown IS iscol_local; 28042a884f0SBarry Smith MPI_Comm comm_is,comm_mat; 281ca3fa75bSLois Curfman McInnes 282ca3fa75bSLois Curfman McInnes PetscFunctionBegin; 28342a884f0SBarry Smith ierr = PetscObjectGetComm((PetscObject)A,&comm_mat);CHKERRQ(ierr); 28442a884f0SBarry Smith ierr = PetscObjectGetComm((PetscObject)iscol,&comm_is);CHKERRQ(ierr); 28542a884f0SBarry Smith if (comm_mat != comm_is) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NOTSAMECOMM,"IS communicator must match matrix communicator"); 28642a884f0SBarry Smith 2874aa3045dSJed Brown ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 288ca3fa75bSLois Curfman McInnes ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr); 2894aa3045dSJed Brown ierr = ISGetIndices(iscol_local,&icol);CHKERRQ(ierr); 290b9b97703SBarry Smith ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr); 291b9b97703SBarry Smith ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr); 2924aa3045dSJed Brown ierr = ISGetSize(iscol,&Ncols);CHKERRQ(ierr); /* global number of columns, size of iscol_local */ 293ca3fa75bSLois Curfman McInnes 294ca3fa75bSLois Curfman McInnes /* No parallel redistribution currently supported! Should really check each index set 2957eba5e9cSLois Curfman McInnes to comfirm that it is OK. ... Currently supports only submatrix same partitioning as 2967eba5e9cSLois Curfman McInnes original matrix! */ 297ca3fa75bSLois Curfman McInnes 298ca3fa75bSLois Curfman McInnes ierr = MatGetLocalSize(A,&nlrows,&nlcols);CHKERRQ(ierr); 2997eba5e9cSLois Curfman McInnes ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr); 300ca3fa75bSLois Curfman McInnes 301ca3fa75bSLois Curfman McInnes /* Check submatrix call */ 302ca3fa75bSLois Curfman McInnes if (scall == MAT_REUSE_MATRIX) { 303e32f2f54SBarry Smith /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */ 3047eba5e9cSLois Curfman McInnes /* Really need to test rows and column sizes! */ 305ca3fa75bSLois Curfman McInnes newmat = *B; 306ca3fa75bSLois Curfman McInnes } else { 307ca3fa75bSLois Curfman McInnes /* Create and fill new matrix */ 308ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&newmat);CHKERRQ(ierr); 3094aa3045dSJed Brown ierr = MatSetSizes(newmat,nrows,ncols,PETSC_DECIDE,Ncols);CHKERRQ(ierr); 3107adad957SLisandro Dalcin ierr = MatSetType(newmat,((PetscObject)A)->type_name);CHKERRQ(ierr); 3110298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr); 312ca3fa75bSLois Curfman McInnes } 313ca3fa75bSLois Curfman McInnes 314ca3fa75bSLois Curfman McInnes /* Now extract the data pointers and do the copy, column at a time */ 315ca3fa75bSLois Curfman McInnes newmatd = (Mat_MPIDense*)newmat->data; 316637a0070SStefano Zampini ierr = MatDenseGetArray(newmatd->A,&bv);CHKERRQ(ierr); 317637a0070SStefano Zampini ierr = MatDenseGetArrayRead(mat->A,&v);CHKERRQ(ierr); 318637a0070SStefano Zampini ierr = MatDenseGetLDA(mat->A,&lda);CHKERRQ(ierr); 3194aa3045dSJed Brown for (i=0; i<Ncols; i++) { 320637a0070SStefano Zampini const PetscScalar *av = v + lda*icol[i]; 321ca3fa75bSLois Curfman McInnes for (j=0; j<nrows; j++) { 3227eba5e9cSLois Curfman McInnes *bv++ = av[irow[j] - rstart]; 323ca3fa75bSLois Curfman McInnes } 324ca3fa75bSLois Curfman McInnes } 325637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(mat->A,&v);CHKERRQ(ierr); 326637a0070SStefano Zampini ierr = MatDenseRestoreArray(newmatd->A,&bv);CHKERRQ(ierr); 327ca3fa75bSLois Curfman McInnes 328ca3fa75bSLois Curfman McInnes /* Assemble the matrices so that the correct flags are set */ 329ca3fa75bSLois Curfman McInnes ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 330ca3fa75bSLois Curfman McInnes ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 331ca3fa75bSLois Curfman McInnes 332ca3fa75bSLois Curfman McInnes /* Free work space */ 333ca3fa75bSLois Curfman McInnes ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr); 3345bdf786aSShri Abhyankar ierr = ISRestoreIndices(iscol_local,&icol);CHKERRQ(ierr); 33532bb1f2dSLisandro Dalcin ierr = ISDestroy(&iscol_local);CHKERRQ(ierr); 336ca3fa75bSLois Curfman McInnes *B = newmat; 337ca3fa75bSLois Curfman McInnes PetscFunctionReturn(0); 338ca3fa75bSLois Curfman McInnes } 339ca3fa75bSLois Curfman McInnes 340637a0070SStefano Zampini PetscErrorCode MatDenseRestoreArray_MPIDense(Mat A,PetscScalar **array) 341ff14e315SSatish Balay { 34273a71a0fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 34373a71a0fSBarry Smith PetscErrorCode ierr; 34473a71a0fSBarry Smith 3453a40ed3dSBarry Smith PetscFunctionBegin; 3468c778c55SBarry Smith ierr = MatDenseRestoreArray(a->A,array);CHKERRQ(ierr); 3473a40ed3dSBarry Smith PetscFunctionReturn(0); 348ff14e315SSatish Balay } 349ff14e315SSatish Balay 350637a0070SStefano Zampini PetscErrorCode MatDenseRestoreArrayRead_MPIDense(Mat A,const PetscScalar **array) 3518572280aSBarry Smith { 3528572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 3538572280aSBarry Smith PetscErrorCode ierr; 3548572280aSBarry Smith 3558572280aSBarry Smith PetscFunctionBegin; 3568572280aSBarry Smith ierr = MatDenseRestoreArrayRead(a->A,array);CHKERRQ(ierr); 3578572280aSBarry Smith PetscFunctionReturn(0); 3588572280aSBarry Smith } 3598572280aSBarry Smith 3606947451fSStefano Zampini PetscErrorCode MatDenseRestoreArrayWrite_MPIDense(Mat A,PetscScalar **array) 3616947451fSStefano Zampini { 3626947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 3636947451fSStefano Zampini PetscErrorCode ierr; 3646947451fSStefano Zampini 3656947451fSStefano Zampini PetscFunctionBegin; 3666947451fSStefano Zampini ierr = MatDenseRestoreArrayWrite(a->A,array);CHKERRQ(ierr); 3676947451fSStefano Zampini PetscFunctionReturn(0); 3686947451fSStefano Zampini } 3696947451fSStefano Zampini 370dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode) 3718965ea79SLois Curfman McInnes { 37239ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 373dfbe8321SBarry Smith PetscErrorCode ierr; 37413f74950SBarry Smith PetscInt nstash,reallocs; 3758965ea79SLois Curfman McInnes 3763a40ed3dSBarry Smith PetscFunctionBegin; 3774067683fSStefano Zampini if (mdn->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 3788965ea79SLois Curfman McInnes 379d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 3808798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 381ae15b995SBarry Smith ierr = PetscInfo2(mdn->A,"Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 3823a40ed3dSBarry Smith PetscFunctionReturn(0); 3838965ea79SLois Curfman McInnes } 3848965ea79SLois Curfman McInnes 385dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode) 3868965ea79SLois Curfman McInnes { 38739ddd567SLois Curfman McInnes Mat_MPIDense *mdn=(Mat_MPIDense*)mat->data; 3886849ba73SBarry Smith PetscErrorCode ierr; 38913f74950SBarry Smith PetscInt i,*row,*col,flg,j,rstart,ncols; 39013f74950SBarry Smith PetscMPIInt n; 39187828ca2SBarry Smith PetscScalar *val; 3928965ea79SLois Curfman McInnes 3933a40ed3dSBarry Smith PetscFunctionBegin; 394910cf402Sprj- if (!mdn->donotstash && !mat->nooffprocentries) { 3958965ea79SLois Curfman McInnes /* wait on receives */ 3967ef1d9bdSSatish Balay while (1) { 3978798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 3987ef1d9bdSSatish Balay if (!flg) break; 3998965ea79SLois Curfman McInnes 4007ef1d9bdSSatish Balay for (i=0; i<n;) { 4017ef1d9bdSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 4022205254eSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 4032205254eSKarl Rupp if (row[j] != rstart) break; 4042205254eSKarl Rupp } 4057ef1d9bdSSatish Balay if (j < n) ncols = j-i; 4067ef1d9bdSSatish Balay else ncols = n-i; 4077ef1d9bdSSatish Balay /* Now assemble all these values with a single function call */ 4084b4eb8d3SJed Brown ierr = MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr); 4097ef1d9bdSSatish Balay i = j; 4108965ea79SLois Curfman McInnes } 4117ef1d9bdSSatish Balay } 4128798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 413910cf402Sprj- } 4148965ea79SLois Curfman McInnes 41539ddd567SLois Curfman McInnes ierr = MatAssemblyBegin(mdn->A,mode);CHKERRQ(ierr); 41639ddd567SLois Curfman McInnes ierr = MatAssemblyEnd(mdn->A,mode);CHKERRQ(ierr); 4178965ea79SLois Curfman McInnes 4186d4a8577SBarry Smith if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 41939ddd567SLois Curfman McInnes ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 4208965ea79SLois Curfman McInnes } 4213a40ed3dSBarry Smith PetscFunctionReturn(0); 4228965ea79SLois Curfman McInnes } 4238965ea79SLois Curfman McInnes 424dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIDense(Mat A) 4258965ea79SLois Curfman McInnes { 426dfbe8321SBarry Smith PetscErrorCode ierr; 42739ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 4283a40ed3dSBarry Smith 4293a40ed3dSBarry Smith PetscFunctionBegin; 4303a40ed3dSBarry Smith ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 4313a40ed3dSBarry Smith PetscFunctionReturn(0); 4328965ea79SLois Curfman McInnes } 4338965ea79SLois Curfman McInnes 434637a0070SStefano Zampini PetscErrorCode MatZeroRows_MPIDense(Mat A,PetscInt n,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 4358965ea79SLois Curfman McInnes { 43639ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 4376849ba73SBarry Smith PetscErrorCode ierr; 438637a0070SStefano Zampini PetscInt i,len,*lrows; 439637a0070SStefano Zampini 440637a0070SStefano Zampini PetscFunctionBegin; 441637a0070SStefano Zampini /* get locally owned rows */ 442637a0070SStefano Zampini ierr = PetscLayoutMapLocal(A->rmap,n,rows,&len,&lrows,NULL);CHKERRQ(ierr); 443637a0070SStefano Zampini /* fix right hand side if needed */ 444637a0070SStefano Zampini if (x && b) { 44597b48c8fSBarry Smith const PetscScalar *xx; 44697b48c8fSBarry Smith PetscScalar *bb; 4478965ea79SLois Curfman McInnes 44897b48c8fSBarry Smith ierr = VecGetArrayRead(x, &xx);CHKERRQ(ierr); 449637a0070SStefano Zampini ierr = VecGetArrayWrite(b, &bb);CHKERRQ(ierr); 450637a0070SStefano Zampini for (i=0;i<len;++i) bb[lrows[i]] = diag*xx[lrows[i]]; 45197b48c8fSBarry Smith ierr = VecRestoreArrayRead(x, &xx);CHKERRQ(ierr); 452637a0070SStefano Zampini ierr = VecRestoreArrayWrite(b, &bb);CHKERRQ(ierr); 45397b48c8fSBarry Smith } 454637a0070SStefano Zampini ierr = MatZeroRows(l->A,len,lrows,0.0,NULL,NULL);CHKERRQ(ierr); 455e2eb51b1SBarry Smith if (diag != 0.0) { 456637a0070SStefano Zampini Vec d; 457b9679d65SBarry Smith 458637a0070SStefano Zampini ierr = MatCreateVecs(A,NULL,&d);CHKERRQ(ierr); 459637a0070SStefano Zampini ierr = VecSet(d,diag);CHKERRQ(ierr); 460637a0070SStefano Zampini ierr = MatDiagonalSet(A,d,INSERT_VALUES);CHKERRQ(ierr); 461637a0070SStefano Zampini ierr = VecDestroy(&d);CHKERRQ(ierr); 462b9679d65SBarry Smith } 463606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 4643a40ed3dSBarry Smith PetscFunctionReturn(0); 4658965ea79SLois Curfman McInnes } 4668965ea79SLois Curfman McInnes 467cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMult_SeqDense(Mat,Vec,Vec); 468cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultAdd_SeqDense(Mat,Vec,Vec,Vec); 469cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTranspose_SeqDense(Mat,Vec,Vec); 470cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTransposeAdd_SeqDense(Mat,Vec,Vec,Vec); 471cc2e6a90SBarry Smith 472dfbe8321SBarry Smith PetscErrorCode MatMult_MPIDense(Mat mat,Vec xx,Vec yy) 4738965ea79SLois Curfman McInnes { 47439ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 475dfbe8321SBarry Smith PetscErrorCode ierr; 476637a0070SStefano Zampini const PetscScalar *ax; 477637a0070SStefano Zampini PetscScalar *ay; 478d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 479c456f294SBarry Smith 4803a40ed3dSBarry Smith PetscFunctionBegin; 481a256111fSJunchao Zhang ierr = VecGetArrayReadAndMemType(xx,&ax,&axmtype);CHKERRQ(ierr); 482a256111fSJunchao Zhang ierr = VecGetArrayAndMemType(mdn->lvec,&ay,&aymtype);CHKERRQ(ierr); 483ad227feaSJunchao Zhang ierr = PetscSFBcastWithMemTypeBegin(mdn->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPI_REPLACE);CHKERRQ(ierr); 484ad227feaSJunchao Zhang ierr = PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ax,ay,MPI_REPLACE);CHKERRQ(ierr); 485a256111fSJunchao Zhang ierr = VecRestoreArrayAndMemType(mdn->lvec,&ay);CHKERRQ(ierr); 486a256111fSJunchao Zhang ierr = VecRestoreArrayReadAndMemType(xx,&ax);CHKERRQ(ierr); 487637a0070SStefano Zampini ierr = (*mdn->A->ops->mult)(mdn->A,mdn->lvec,yy);CHKERRQ(ierr); 4883a40ed3dSBarry Smith PetscFunctionReturn(0); 4898965ea79SLois Curfman McInnes } 4908965ea79SLois Curfman McInnes 491dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz) 4928965ea79SLois Curfman McInnes { 49339ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 494dfbe8321SBarry Smith PetscErrorCode ierr; 495637a0070SStefano Zampini const PetscScalar *ax; 496637a0070SStefano Zampini PetscScalar *ay; 497d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 498c456f294SBarry Smith 4993a40ed3dSBarry Smith PetscFunctionBegin; 500a256111fSJunchao Zhang ierr = VecGetArrayReadAndMemType(xx,&ax,&axmtype);CHKERRQ(ierr); 501a256111fSJunchao Zhang ierr = VecGetArrayAndMemType(mdn->lvec,&ay,&aymtype);CHKERRQ(ierr); 502ad227feaSJunchao Zhang ierr = PetscSFBcastWithMemTypeBegin(mdn->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPI_REPLACE);CHKERRQ(ierr); 503ad227feaSJunchao Zhang ierr = PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ax,ay,MPI_REPLACE);CHKERRQ(ierr); 504a256111fSJunchao Zhang ierr = VecRestoreArrayAndMemType(mdn->lvec,&ay);CHKERRQ(ierr); 505a256111fSJunchao Zhang ierr = VecRestoreArrayReadAndMemType(xx,&ax);CHKERRQ(ierr); 506637a0070SStefano Zampini ierr = (*mdn->A->ops->multadd)(mdn->A,mdn->lvec,yy,zz);CHKERRQ(ierr); 5073a40ed3dSBarry Smith PetscFunctionReturn(0); 5088965ea79SLois Curfman McInnes } 5098965ea79SLois Curfman McInnes 510dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIDense(Mat A,Vec xx,Vec yy) 511096963f5SLois Curfman McInnes { 512096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 513dfbe8321SBarry Smith PetscErrorCode ierr; 514637a0070SStefano Zampini const PetscScalar *ax; 515637a0070SStefano Zampini PetscScalar *ay; 516d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 517096963f5SLois Curfman McInnes 5183a40ed3dSBarry Smith PetscFunctionBegin; 519637a0070SStefano Zampini ierr = VecSet(yy,0.0);CHKERRQ(ierr); 520637a0070SStefano Zampini ierr = (*a->A->ops->multtranspose)(a->A,xx,a->lvec);CHKERRQ(ierr); 521a256111fSJunchao Zhang ierr = VecGetArrayReadAndMemType(a->lvec,&ax,&axmtype);CHKERRQ(ierr); 522a256111fSJunchao Zhang ierr = VecGetArrayAndMemType(yy,&ay,&aymtype);CHKERRQ(ierr); 523d0295fc0SJunchao Zhang ierr = PetscSFReduceWithMemTypeBegin(a->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPIU_SUM);CHKERRQ(ierr); 524637a0070SStefano Zampini ierr = PetscSFReduceEnd(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM);CHKERRQ(ierr); 525a256111fSJunchao Zhang ierr = VecRestoreArrayReadAndMemType(a->lvec,&ax);CHKERRQ(ierr); 526a256111fSJunchao Zhang ierr = VecRestoreArrayAndMemType(yy,&ay);CHKERRQ(ierr); 5273a40ed3dSBarry Smith PetscFunctionReturn(0); 528096963f5SLois Curfman McInnes } 529096963f5SLois Curfman McInnes 530dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz) 531096963f5SLois Curfman McInnes { 532096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 533dfbe8321SBarry Smith PetscErrorCode ierr; 534637a0070SStefano Zampini const PetscScalar *ax; 535637a0070SStefano Zampini PetscScalar *ay; 536d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 537096963f5SLois Curfman McInnes 5383a40ed3dSBarry Smith PetscFunctionBegin; 5393501a2bdSLois Curfman McInnes ierr = VecCopy(yy,zz);CHKERRQ(ierr); 540637a0070SStefano Zampini ierr = (*a->A->ops->multtranspose)(a->A,xx,a->lvec);CHKERRQ(ierr); 541a256111fSJunchao Zhang ierr = VecGetArrayReadAndMemType(a->lvec,&ax,&axmtype);CHKERRQ(ierr); 542a256111fSJunchao Zhang ierr = VecGetArrayAndMemType(zz,&ay,&aymtype);CHKERRQ(ierr); 543d0295fc0SJunchao Zhang ierr = PetscSFReduceWithMemTypeBegin(a->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPIU_SUM);CHKERRQ(ierr); 544637a0070SStefano Zampini ierr = PetscSFReduceEnd(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM);CHKERRQ(ierr); 545a256111fSJunchao Zhang ierr = VecRestoreArrayReadAndMemType(a->lvec,&ax);CHKERRQ(ierr); 546a256111fSJunchao Zhang ierr = VecRestoreArrayAndMemType(zz,&ay);CHKERRQ(ierr); 5473a40ed3dSBarry Smith PetscFunctionReturn(0); 548096963f5SLois Curfman McInnes } 549096963f5SLois Curfman McInnes 550dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIDense(Mat A,Vec v) 5518965ea79SLois Curfman McInnes { 55239ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 553dfbe8321SBarry Smith PetscErrorCode ierr; 554637a0070SStefano Zampini PetscInt lda,len,i,n,m = A->rmap->n,radd; 55587828ca2SBarry Smith PetscScalar *x,zero = 0.0; 556637a0070SStefano Zampini const PetscScalar *av; 557ed3cc1f0SBarry Smith 5583a40ed3dSBarry Smith PetscFunctionBegin; 5592dcb1b2aSMatthew Knepley ierr = VecSet(v,zero);CHKERRQ(ierr); 5601ebc52fbSHong Zhang ierr = VecGetArray(v,&x);CHKERRQ(ierr); 561096963f5SLois Curfman McInnes ierr = VecGetSize(v,&n);CHKERRQ(ierr); 562e32f2f54SBarry Smith if (n != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec"); 563d0f46423SBarry Smith len = PetscMin(a->A->rmap->n,a->A->cmap->n); 564d0f46423SBarry Smith radd = A->rmap->rstart*m; 565637a0070SStefano Zampini ierr = MatDenseGetArrayRead(a->A,&av);CHKERRQ(ierr); 566637a0070SStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 56744cd7ae7SLois Curfman McInnes for (i=0; i<len; i++) { 568637a0070SStefano Zampini x[i] = av[radd + i*lda + i]; 569096963f5SLois Curfman McInnes } 570637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(a->A,&av);CHKERRQ(ierr); 5711ebc52fbSHong Zhang ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 5723a40ed3dSBarry Smith PetscFunctionReturn(0); 5738965ea79SLois Curfman McInnes } 5748965ea79SLois Curfman McInnes 575dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIDense(Mat mat) 5768965ea79SLois Curfman McInnes { 5773501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 578dfbe8321SBarry Smith PetscErrorCode ierr; 579ed3cc1f0SBarry Smith 5803a40ed3dSBarry Smith PetscFunctionBegin; 581aa482453SBarry Smith #if defined(PETSC_USE_LOG) 582d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D, Cols=%D",mat->rmap->N,mat->cmap->N); 5838965ea79SLois Curfman McInnes #endif 5848798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 585616b8fbbSStefano Zampini if (mdn->vecinuse) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 586616b8fbbSStefano Zampini if (mdn->matinuse) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 5876bf464f9SBarry Smith ierr = MatDestroy(&mdn->A);CHKERRQ(ierr); 5886bf464f9SBarry Smith ierr = VecDestroy(&mdn->lvec);CHKERRQ(ierr); 589637a0070SStefano Zampini ierr = PetscSFDestroy(&mdn->Mvctx);CHKERRQ(ierr); 5906947451fSStefano Zampini ierr = VecDestroy(&mdn->cvec);CHKERRQ(ierr); 5915ea7661aSPierre Jolivet ierr = MatDestroy(&mdn->cmat);CHKERRQ(ierr); 59201b82886SBarry Smith 593bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 594f4259b30SLisandro Dalcin ierr = PetscObjectChangeTypeName((PetscObject)mat,NULL);CHKERRQ(ierr); 5958baccfbdSHong Zhang 59649a6ff4bSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",NULL);CHKERRQ(ierr); 597ad16ce7aSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseSetLDA_C",NULL);CHKERRQ(ierr); 5988baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",NULL);CHKERRQ(ierr); 5998572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",NULL);CHKERRQ(ierr); 6008572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",NULL);CHKERRQ(ierr); 6018572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",NULL);CHKERRQ(ierr); 6026947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayWrite_C",NULL);CHKERRQ(ierr); 6036947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayWrite_C",NULL);CHKERRQ(ierr); 604d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",NULL);CHKERRQ(ierr); 605d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",NULL);CHKERRQ(ierr); 606d5ea218eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseReplaceArray_C",NULL);CHKERRQ(ierr); 6074e29119aSPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 6084e29119aSPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_mpiaij_C",NULL);CHKERRQ(ierr); 6098baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 6108baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",NULL);CHKERRQ(ierr); 6118baccfbdSHong Zhang #endif 612d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 613d24d4204SJose E. Roman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_scalapack_C",NULL);CHKERRQ(ierr); 614d24d4204SJose E. Roman #endif 615bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",NULL);CHKERRQ(ierr); 6164222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 6174222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaij_C",NULL);CHKERRQ(ierr); 6186718818eSStefano Zampini #if defined (PETSC_HAVE_CUDA) 6196718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaijcusparse_mpidense_C",NULL);CHKERRQ(ierr); 6206718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaijcusparse_C",NULL);CHKERRQ(ierr); 6216718818eSStefano Zampini #endif 62286aefd0dSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",NULL);CHKERRQ(ierr); 62386aefd0dSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",NULL);CHKERRQ(ierr); 6246947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",NULL);CHKERRQ(ierr); 6256947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",NULL);CHKERRQ(ierr); 6266947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",NULL);CHKERRQ(ierr); 6276947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",NULL);CHKERRQ(ierr); 6286947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",NULL);CHKERRQ(ierr); 6296947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",NULL);CHKERRQ(ierr); 6305ea7661aSPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetSubMatrix_C",NULL);CHKERRQ(ierr); 6315ea7661aSPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreSubMatrix_C",NULL);CHKERRQ(ierr); 6323a40ed3dSBarry Smith PetscFunctionReturn(0); 6338965ea79SLois Curfman McInnes } 63439ddd567SLois Curfman McInnes 63552c5f739Sprj- PETSC_INTERN PetscErrorCode MatView_SeqDense(Mat,PetscViewer); 63652c5f739Sprj- 6379804daf3SBarry Smith #include <petscdraw.h> 6386849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 6398965ea79SLois Curfman McInnes { 64039ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 641dfbe8321SBarry Smith PetscErrorCode ierr; 642616b8fbbSStefano Zampini PetscMPIInt rank; 64319fd82e9SBarry Smith PetscViewerType vtype; 644ace3abfcSBarry Smith PetscBool iascii,isdraw; 645b0a32e0cSBarry Smith PetscViewer sviewer; 646f3ef73ceSBarry Smith PetscViewerFormat format; 6478965ea79SLois Curfman McInnes 6483a40ed3dSBarry Smith PetscFunctionBegin; 649ffc4695bSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRMPI(ierr); 650251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 651251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 65232077d6dSBarry Smith if (iascii) { 653b0a32e0cSBarry Smith ierr = PetscViewerGetType(viewer,&vtype);CHKERRQ(ierr); 654b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 655456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 6564e220ebcSLois Curfman McInnes MatInfo info; 657888f2ed8SSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 6581575c14dSBarry Smith ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr); 6597b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer," [%d] local rows %D nz %D nz alloced %D mem %D \n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory);CHKERRQ(ierr); 660b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 6611575c14dSBarry Smith ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr); 662637a0070SStefano Zampini ierr = PetscSFView(mdn->Mvctx,viewer);CHKERRQ(ierr); 6633a40ed3dSBarry Smith PetscFunctionReturn(0); 664fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 6653a40ed3dSBarry Smith PetscFunctionReturn(0); 6668965ea79SLois Curfman McInnes } 667f1af5d2fSBarry Smith } else if (isdraw) { 668b0a32e0cSBarry Smith PetscDraw draw; 669ace3abfcSBarry Smith PetscBool isnull; 670f1af5d2fSBarry Smith 671b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 672b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 673f1af5d2fSBarry Smith if (isnull) PetscFunctionReturn(0); 674f1af5d2fSBarry Smith } 67577ed5343SBarry Smith 6767da1fb6eSBarry Smith { 6778965ea79SLois Curfman McInnes /* assemble the entire matrix onto first processor. */ 6788965ea79SLois Curfman McInnes Mat A; 679d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,m,row,i,nz; 680ba8c8a56SBarry Smith PetscInt *cols; 681ba8c8a56SBarry Smith PetscScalar *vals; 6828965ea79SLois Curfman McInnes 683ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr); 684dd400576SPatrick Sanan if (rank == 0) { 685f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 6863a40ed3dSBarry Smith } else { 687f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 6888965ea79SLois Curfman McInnes } 6897adad957SLisandro Dalcin /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */ 690878740d9SKris Buschelman ierr = MatSetType(A,MATMPIDENSE);CHKERRQ(ierr); 6910298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(A,NULL);CHKERRQ(ierr); 6923bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr); 6938965ea79SLois Curfman McInnes 69439ddd567SLois Curfman McInnes /* Copy the matrix ... This isn't the most efficient means, 69539ddd567SLois Curfman McInnes but it's quick for now */ 69651022da4SBarry Smith A->insertmode = INSERT_VALUES; 6972205254eSKarl Rupp 6982205254eSKarl Rupp row = mat->rmap->rstart; 6992205254eSKarl Rupp m = mdn->A->rmap->n; 7008965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 701ba8c8a56SBarry Smith ierr = MatGetRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 702ba8c8a56SBarry Smith ierr = MatSetValues_MPIDense(A,1,&row,nz,cols,vals,INSERT_VALUES);CHKERRQ(ierr); 703ba8c8a56SBarry Smith ierr = MatRestoreRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 70439ddd567SLois Curfman McInnes row++; 7058965ea79SLois Curfman McInnes } 7068965ea79SLois Curfman McInnes 7076d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 7086d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 7093f08860eSBarry Smith ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 710dd400576SPatrick Sanan if (rank == 0) { 7111a9d3c3cSBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPIDense*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr); 7127da1fb6eSBarry Smith ierr = MatView_SeqDense(((Mat_MPIDense*)(A->data))->A,sviewer);CHKERRQ(ierr); 7138965ea79SLois Curfman McInnes } 7143f08860eSBarry Smith ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 715b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 7166bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 7178965ea79SLois Curfman McInnes } 7183a40ed3dSBarry Smith PetscFunctionReturn(0); 7198965ea79SLois Curfman McInnes } 7208965ea79SLois Curfman McInnes 721dfbe8321SBarry Smith PetscErrorCode MatView_MPIDense(Mat mat,PetscViewer viewer) 7228965ea79SLois Curfman McInnes { 723dfbe8321SBarry Smith PetscErrorCode ierr; 724ace3abfcSBarry Smith PetscBool iascii,isbinary,isdraw,issocket; 7258965ea79SLois Curfman McInnes 726433994e6SBarry Smith PetscFunctionBegin; 727251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 728251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 729251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 730251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 7310f5bd95cSBarry Smith 73232077d6dSBarry Smith if (iascii || issocket || isdraw) { 733f1af5d2fSBarry Smith ierr = MatView_MPIDense_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 7340f5bd95cSBarry Smith } else if (isbinary) { 7358491ab44SLisandro Dalcin ierr = MatView_Dense_Binary(mat,viewer);CHKERRQ(ierr); 73611aeaf0aSBarry Smith } 7373a40ed3dSBarry Smith PetscFunctionReturn(0); 7388965ea79SLois Curfman McInnes } 7398965ea79SLois Curfman McInnes 740dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info) 7418965ea79SLois Curfman McInnes { 7423501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 7433501a2bdSLois Curfman McInnes Mat mdn = mat->A; 744dfbe8321SBarry Smith PetscErrorCode ierr; 7453966268fSBarry Smith PetscLogDouble isend[5],irecv[5]; 7468965ea79SLois Curfman McInnes 7473a40ed3dSBarry Smith PetscFunctionBegin; 7484e220ebcSLois Curfman McInnes info->block_size = 1.0; 7492205254eSKarl Rupp 7504e220ebcSLois Curfman McInnes ierr = MatGetInfo(mdn,MAT_LOCAL,info);CHKERRQ(ierr); 7512205254eSKarl Rupp 7524e220ebcSLois Curfman McInnes isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 7534e220ebcSLois Curfman McInnes isend[3] = info->memory; isend[4] = info->mallocs; 7548965ea79SLois Curfman McInnes if (flag == MAT_LOCAL) { 7554e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 7564e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 7574e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 7584e220ebcSLois Curfman McInnes info->memory = isend[3]; 7594e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 7608965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 761820f2d46SBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_MAX,PetscObjectComm((PetscObject)A));CHKERRMPI(ierr); 7622205254eSKarl Rupp 7634e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7644e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7654e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7664e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7674e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7688965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 769820f2d46SBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_SUM,PetscObjectComm((PetscObject)A));CHKERRMPI(ierr); 7702205254eSKarl Rupp 7714e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7724e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7734e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7744e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7754e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7768965ea79SLois Curfman McInnes } 7774e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 7784e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 7794e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 7803a40ed3dSBarry Smith PetscFunctionReturn(0); 7818965ea79SLois Curfman McInnes } 7828965ea79SLois Curfman McInnes 783ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIDense(Mat A,MatOption op,PetscBool flg) 7848965ea79SLois Curfman McInnes { 78539ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 786dfbe8321SBarry Smith PetscErrorCode ierr; 7878965ea79SLois Curfman McInnes 7883a40ed3dSBarry Smith PetscFunctionBegin; 78912c028f9SKris Buschelman switch (op) { 790512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 79112c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 79212c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 79343674050SBarry Smith MatCheckPreallocated(A,1); 7944e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 79512c028f9SKris Buschelman break; 79612c028f9SKris Buschelman case MAT_ROW_ORIENTED: 79743674050SBarry Smith MatCheckPreallocated(A,1); 7984e0d8c25SBarry Smith a->roworiented = flg; 7994e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 80012c028f9SKris Buschelman break; 8018c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 80213fa8e87SLisandro Dalcin case MAT_KEEP_NONZERO_PATTERN: 80312c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 804071fcb05SBarry Smith case MAT_SORTED_FULL: 805290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 80612c028f9SKris Buschelman break; 80712c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 8084e0d8c25SBarry Smith a->donotstash = flg; 80912c028f9SKris Buschelman break; 81077e54ba9SKris Buschelman case MAT_SYMMETRIC: 81177e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 8129a4540c5SBarry Smith case MAT_HERMITIAN: 8139a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 814600fe468SBarry Smith case MAT_IGNORE_LOWER_TRIANGULAR: 8155d7aebe8SStefano Zampini case MAT_IGNORE_ZERO_ENTRIES: 816290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 81777e54ba9SKris Buschelman break; 81812c028f9SKris Buschelman default: 819e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %s",MatOptions[op]); 8203a40ed3dSBarry Smith } 8213a40ed3dSBarry Smith PetscFunctionReturn(0); 8228965ea79SLois Curfman McInnes } 8238965ea79SLois Curfman McInnes 824dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIDense(Mat A,Vec ll,Vec rr) 8255b2fa520SLois Curfman McInnes { 8265b2fa520SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 827637a0070SStefano Zampini const PetscScalar *l; 828637a0070SStefano Zampini PetscScalar x,*v,*vv,*r; 829dfbe8321SBarry Smith PetscErrorCode ierr; 830637a0070SStefano Zampini PetscInt i,j,s2a,s3a,s2,s3,m=mdn->A->rmap->n,n=mdn->A->cmap->n,lda; 8315b2fa520SLois Curfman McInnes 8325b2fa520SLois Curfman McInnes PetscFunctionBegin; 833637a0070SStefano Zampini ierr = MatDenseGetArray(mdn->A,&vv);CHKERRQ(ierr); 834637a0070SStefano Zampini ierr = MatDenseGetLDA(mdn->A,&lda);CHKERRQ(ierr); 83572d926a5SLois Curfman McInnes ierr = MatGetLocalSize(A,&s2,&s3);CHKERRQ(ierr); 8365b2fa520SLois Curfman McInnes if (ll) { 83772d926a5SLois Curfman McInnes ierr = VecGetLocalSize(ll,&s2a);CHKERRQ(ierr); 838637a0070SStefano Zampini if (s2a != s2) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vector non-conforming local size, %D != %D", s2a, s2); 839bca11509SBarry Smith ierr = VecGetArrayRead(ll,&l);CHKERRQ(ierr); 8405b2fa520SLois Curfman McInnes for (i=0; i<m; i++) { 8415b2fa520SLois Curfman McInnes x = l[i]; 842637a0070SStefano Zampini v = vv + i; 843637a0070SStefano Zampini for (j=0; j<n; j++) { (*v) *= x; v+= lda;} 8445b2fa520SLois Curfman McInnes } 845bca11509SBarry Smith ierr = VecRestoreArrayRead(ll,&l);CHKERRQ(ierr); 846637a0070SStefano Zampini ierr = PetscLogFlops(1.0*n*m);CHKERRQ(ierr); 8475b2fa520SLois Curfman McInnes } 8485b2fa520SLois Curfman McInnes if (rr) { 849637a0070SStefano Zampini const PetscScalar *ar; 850637a0070SStefano Zampini 851175be7b4SMatthew Knepley ierr = VecGetLocalSize(rr,&s3a);CHKERRQ(ierr); 852e32f2f54SBarry Smith if (s3a != s3) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vec non-conforming local size, %d != %d.", s3a, s3); 853637a0070SStefano Zampini ierr = VecGetArrayRead(rr,&ar);CHKERRQ(ierr); 854637a0070SStefano Zampini ierr = VecGetArray(mdn->lvec,&r);CHKERRQ(ierr); 855ad227feaSJunchao Zhang ierr = PetscSFBcastBegin(mdn->Mvctx,MPIU_SCALAR,ar,r,MPI_REPLACE);CHKERRQ(ierr); 856ad227feaSJunchao Zhang ierr = PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ar,r,MPI_REPLACE);CHKERRQ(ierr); 857637a0070SStefano Zampini ierr = VecRestoreArrayRead(rr,&ar);CHKERRQ(ierr); 8585b2fa520SLois Curfman McInnes for (i=0; i<n; i++) { 8595b2fa520SLois Curfman McInnes x = r[i]; 860637a0070SStefano Zampini v = vv + i*lda; 8612205254eSKarl Rupp for (j=0; j<m; j++) (*v++) *= x; 8625b2fa520SLois Curfman McInnes } 863637a0070SStefano Zampini ierr = VecRestoreArray(mdn->lvec,&r);CHKERRQ(ierr); 864637a0070SStefano Zampini ierr = PetscLogFlops(1.0*n*m);CHKERRQ(ierr); 8655b2fa520SLois Curfman McInnes } 866637a0070SStefano Zampini ierr = MatDenseRestoreArray(mdn->A,&vv);CHKERRQ(ierr); 8675b2fa520SLois Curfman McInnes PetscFunctionReturn(0); 8685b2fa520SLois Curfman McInnes } 8695b2fa520SLois Curfman McInnes 870dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIDense(Mat A,NormType type,PetscReal *nrm) 871096963f5SLois Curfman McInnes { 8723501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 873dfbe8321SBarry Smith PetscErrorCode ierr; 87413f74950SBarry Smith PetscInt i,j; 875616b8fbbSStefano Zampini PetscMPIInt size; 876329f5518SBarry Smith PetscReal sum = 0.0; 877637a0070SStefano Zampini const PetscScalar *av,*v; 8783501a2bdSLois Curfman McInnes 8793a40ed3dSBarry Smith PetscFunctionBegin; 880637a0070SStefano Zampini ierr = MatDenseGetArrayRead(mdn->A,&av);CHKERRQ(ierr); 881637a0070SStefano Zampini v = av; 882ffc4695bSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRMPI(ierr); 883616b8fbbSStefano Zampini if (size == 1) { 884064f8208SBarry Smith ierr = MatNorm(mdn->A,type,nrm);CHKERRQ(ierr); 8853501a2bdSLois Curfman McInnes } else { 8863501a2bdSLois Curfman McInnes if (type == NORM_FROBENIUS) { 887d0f46423SBarry Smith for (i=0; i<mdn->A->cmap->n*mdn->A->rmap->n; i++) { 888329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 8893501a2bdSLois Curfman McInnes } 890820f2d46SBarry Smith ierr = MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRMPI(ierr); 8918f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 892dc0b31edSSatish Balay ierr = PetscLogFlops(2.0*mdn->A->cmap->n*mdn->A->rmap->n);CHKERRQ(ierr); 8933a40ed3dSBarry Smith } else if (type == NORM_1) { 894329f5518SBarry Smith PetscReal *tmp,*tmp2; 895580bdb30SBarry Smith ierr = PetscCalloc2(A->cmap->N,&tmp,A->cmap->N,&tmp2);CHKERRQ(ierr); 896064f8208SBarry Smith *nrm = 0.0; 897637a0070SStefano Zampini v = av; 898d0f46423SBarry Smith for (j=0; j<mdn->A->cmap->n; j++) { 899d0f46423SBarry Smith for (i=0; i<mdn->A->rmap->n; i++) { 90067e560aaSBarry Smith tmp[j] += PetscAbsScalar(*v); v++; 9013501a2bdSLois Curfman McInnes } 9023501a2bdSLois Curfman McInnes } 903820f2d46SBarry Smith ierr = MPIU_Allreduce(tmp,tmp2,A->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRMPI(ierr); 904d0f46423SBarry Smith for (j=0; j<A->cmap->N; j++) { 905064f8208SBarry Smith if (tmp2[j] > *nrm) *nrm = tmp2[j]; 9063501a2bdSLois Curfman McInnes } 9078627564fSBarry Smith ierr = PetscFree2(tmp,tmp2);CHKERRQ(ierr); 908d0f46423SBarry Smith ierr = PetscLogFlops(A->cmap->n*A->rmap->n);CHKERRQ(ierr); 9093a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 910329f5518SBarry Smith PetscReal ntemp; 9113501a2bdSLois Curfman McInnes ierr = MatNorm(mdn->A,type,&ntemp);CHKERRQ(ierr); 912820f2d46SBarry Smith ierr = MPIU_Allreduce(&ntemp,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRMPI(ierr); 913ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"No support for two norm"); 9143501a2bdSLois Curfman McInnes } 915637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(mdn->A,&av);CHKERRQ(ierr); 9163a40ed3dSBarry Smith PetscFunctionReturn(0); 9173501a2bdSLois Curfman McInnes } 9183501a2bdSLois Curfman McInnes 919fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIDense(Mat A,MatReuse reuse,Mat *matout) 9203501a2bdSLois Curfman McInnes { 9213501a2bdSLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 9223501a2bdSLois Curfman McInnes Mat B; 923d0f46423SBarry Smith PetscInt M = A->rmap->N,N = A->cmap->N,m,n,*rwork,rstart = A->rmap->rstart; 9246849ba73SBarry Smith PetscErrorCode ierr; 925637a0070SStefano Zampini PetscInt j,i,lda; 92687828ca2SBarry Smith PetscScalar *v; 9273501a2bdSLois Curfman McInnes 9283a40ed3dSBarry Smith PetscFunctionBegin; 929cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 930ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 931d0f46423SBarry Smith ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr); 9327adad957SLisandro Dalcin ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr); 9330298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(B,NULL);CHKERRQ(ierr); 934637a0070SStefano Zampini } else B = *matout; 9353501a2bdSLois Curfman McInnes 936637a0070SStefano Zampini m = a->A->rmap->n; n = a->A->cmap->n; 937637a0070SStefano Zampini ierr = MatDenseGetArrayRead(a->A,(const PetscScalar**)&v);CHKERRQ(ierr); 938637a0070SStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 939785e854fSJed Brown ierr = PetscMalloc1(m,&rwork);CHKERRQ(ierr); 9403501a2bdSLois Curfman McInnes for (i=0; i<m; i++) rwork[i] = rstart + i; 9411acff37aSSatish Balay for (j=0; j<n; j++) { 9423501a2bdSLois Curfman McInnes ierr = MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES);CHKERRQ(ierr); 943637a0070SStefano Zampini v += lda; 9443501a2bdSLois Curfman McInnes } 945637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(a->A,(const PetscScalar**)&v);CHKERRQ(ierr); 946606d414cSSatish Balay ierr = PetscFree(rwork);CHKERRQ(ierr); 9476d4a8577SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 9486d4a8577SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 949cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) { 9503501a2bdSLois Curfman McInnes *matout = B; 9513501a2bdSLois Curfman McInnes } else { 95228be2f97SBarry Smith ierr = MatHeaderMerge(A,&B);CHKERRQ(ierr); 9533501a2bdSLois Curfman McInnes } 9543a40ed3dSBarry Smith PetscFunctionReturn(0); 955096963f5SLois Curfman McInnes } 956096963f5SLois Curfman McInnes 9576849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat*); 95852c5f739Sprj- PETSC_INTERN PetscErrorCode MatScale_MPIDense(Mat,PetscScalar); 9598965ea79SLois Curfman McInnes 9604994cf47SJed Brown PetscErrorCode MatSetUp_MPIDense(Mat A) 961273d9f13SBarry Smith { 962dfbe8321SBarry Smith PetscErrorCode ierr; 963273d9f13SBarry Smith 964273d9f13SBarry Smith PetscFunctionBegin; 96518992e5dSStefano Zampini ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr); 96618992e5dSStefano Zampini ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr); 96718992e5dSStefano Zampini if (!A->preallocated) { 968f4259b30SLisandro Dalcin ierr = MatMPIDenseSetPreallocation(A,NULL);CHKERRQ(ierr); 96918992e5dSStefano Zampini } 970273d9f13SBarry Smith PetscFunctionReturn(0); 971273d9f13SBarry Smith } 972273d9f13SBarry Smith 973488007eeSBarry Smith PetscErrorCode MatAXPY_MPIDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str) 974488007eeSBarry Smith { 975488007eeSBarry Smith PetscErrorCode ierr; 976488007eeSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)Y->data, *B = (Mat_MPIDense*)X->data; 977488007eeSBarry Smith 978488007eeSBarry Smith PetscFunctionBegin; 979488007eeSBarry Smith ierr = MatAXPY(A->A,alpha,B->A,str);CHKERRQ(ierr); 980488007eeSBarry Smith PetscFunctionReturn(0); 981488007eeSBarry Smith } 982488007eeSBarry Smith 9837087cfbeSBarry Smith PetscErrorCode MatConjugate_MPIDense(Mat mat) 984ba337c44SJed Brown { 985ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)mat->data; 986ba337c44SJed Brown PetscErrorCode ierr; 987ba337c44SJed Brown 988ba337c44SJed Brown PetscFunctionBegin; 989ba337c44SJed Brown ierr = MatConjugate(a->A);CHKERRQ(ierr); 990ba337c44SJed Brown PetscFunctionReturn(0); 991ba337c44SJed Brown } 992ba337c44SJed Brown 993ba337c44SJed Brown PetscErrorCode MatRealPart_MPIDense(Mat A) 994ba337c44SJed Brown { 995ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 996ba337c44SJed Brown PetscErrorCode ierr; 997ba337c44SJed Brown 998ba337c44SJed Brown PetscFunctionBegin; 999ba337c44SJed Brown ierr = MatRealPart(a->A);CHKERRQ(ierr); 1000ba337c44SJed Brown PetscFunctionReturn(0); 1001ba337c44SJed Brown } 1002ba337c44SJed Brown 1003ba337c44SJed Brown PetscErrorCode MatImaginaryPart_MPIDense(Mat A) 1004ba337c44SJed Brown { 1005ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1006ba337c44SJed Brown PetscErrorCode ierr; 1007ba337c44SJed Brown 1008ba337c44SJed Brown PetscFunctionBegin; 1009ba337c44SJed Brown ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 1010ba337c44SJed Brown PetscFunctionReturn(0); 1011ba337c44SJed Brown } 1012ba337c44SJed Brown 101349a6ff4bSBarry Smith static PetscErrorCode MatGetColumnVector_MPIDense(Mat A,Vec v,PetscInt col) 101449a6ff4bSBarry Smith { 101549a6ff4bSBarry Smith PetscErrorCode ierr; 1016637a0070SStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*) A->data; 101749a6ff4bSBarry Smith 101849a6ff4bSBarry Smith PetscFunctionBegin; 1019637a0070SStefano Zampini if (!a->A) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Missing local matrix"); 1020637a0070SStefano Zampini if (!a->A->ops->getcolumnvector) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Missing get column operation"); 1021637a0070SStefano Zampini ierr = (*a->A->ops->getcolumnvector)(a->A,v,col);CHKERRQ(ierr); 102249a6ff4bSBarry Smith PetscFunctionReturn(0); 102349a6ff4bSBarry Smith } 102449a6ff4bSBarry Smith 1025857cbf51SRichard Tran Mills PETSC_INTERN PetscErrorCode MatGetColumnReductions_SeqDense(Mat,PetscInt,PetscReal*); 102652c5f739Sprj- 1027857cbf51SRichard Tran Mills PetscErrorCode MatGetColumnReductions_MPIDense(Mat A,PetscInt type,PetscReal *reductions) 10280716a85fSBarry Smith { 10290716a85fSBarry Smith PetscErrorCode ierr; 1030a873a8cdSSam Reynolds PetscInt i,m,n; 10310716a85fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*) A->data; 10320716a85fSBarry Smith PetscReal *work; 10330716a85fSBarry Smith 10340716a85fSBarry Smith PetscFunctionBegin; 1035a873a8cdSSam Reynolds ierr = MatGetSize(A,&m,&n);CHKERRQ(ierr); 1036785e854fSJed Brown ierr = PetscMalloc1(n,&work);CHKERRQ(ierr); 1037857cbf51SRichard Tran Mills if (type == REDUCTION_MEAN_REALPART) { 1038857cbf51SRichard Tran Mills ierr = MatGetColumnReductions_SeqDense(a->A,(PetscInt)REDUCTION_SUM_REALPART,work);CHKERRQ(ierr); 1039857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_IMAGINARYPART) { 1040857cbf51SRichard Tran Mills ierr = MatGetColumnReductions_SeqDense(a->A,(PetscInt)REDUCTION_SUM_IMAGINARYPART,work);CHKERRQ(ierr); 1041a873a8cdSSam Reynolds } else { 1042a873a8cdSSam Reynolds ierr = MatGetColumnReductions_SeqDense(a->A,type,work);CHKERRQ(ierr); 1043a873a8cdSSam Reynolds } 1044857cbf51SRichard Tran Mills if (type == NORM_2) { 10450716a85fSBarry Smith for (i=0; i<n; i++) work[i] *= work[i]; 10460716a85fSBarry Smith } 1047857cbf51SRichard Tran Mills if (type == NORM_INFINITY) { 1048a873a8cdSSam Reynolds ierr = MPIU_Allreduce(work,reductions,n,MPIU_REAL,MPIU_MAX,A->hdr.comm);CHKERRMPI(ierr); 10490716a85fSBarry Smith } else { 1050a873a8cdSSam Reynolds ierr = MPIU_Allreduce(work,reductions,n,MPIU_REAL,MPIU_SUM,A->hdr.comm);CHKERRMPI(ierr); 10510716a85fSBarry Smith } 10520716a85fSBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 1053857cbf51SRichard Tran Mills if (type == NORM_2) { 1054a873a8cdSSam Reynolds for (i=0; i<n; i++) reductions[i] = PetscSqrtReal(reductions[i]); 1055857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 1056a873a8cdSSam Reynolds for (i=0; i<n; i++) reductions[i] /= m; 10570716a85fSBarry Smith } 10580716a85fSBarry Smith PetscFunctionReturn(0); 10590716a85fSBarry Smith } 10600716a85fSBarry Smith 1061637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 10626947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVec_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10636947451fSStefano Zampini { 10646947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10656947451fSStefano Zampini PetscErrorCode ierr; 10666947451fSStefano Zampini PetscInt lda; 10676947451fSStefano Zampini 10686947451fSStefano Zampini PetscFunctionBegin; 1069616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1070616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 10716947451fSStefano Zampini if (!a->cvec) { 10726947451fSStefano Zampini ierr = VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr); 1073616b8fbbSStefano Zampini ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec);CHKERRQ(ierr); 10746947451fSStefano Zampini } 10756947451fSStefano Zampini a->vecinuse = col + 1; 10766947451fSStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 10776947451fSStefano Zampini ierr = MatDenseCUDAGetArray(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 10786947451fSStefano Zampini ierr = VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr); 10796947451fSStefano Zampini *v = a->cvec; 10806947451fSStefano Zampini PetscFunctionReturn(0); 10816947451fSStefano Zampini } 10826947451fSStefano Zampini 10836947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVec_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10846947451fSStefano Zampini { 10856947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10866947451fSStefano Zampini PetscErrorCode ierr; 10876947451fSStefano Zampini 10886947451fSStefano Zampini PetscFunctionBegin; 10895ea7661aSPierre Jolivet if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 10906947451fSStefano Zampini if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector"); 10916947451fSStefano Zampini a->vecinuse = 0; 10926947451fSStefano Zampini ierr = MatDenseCUDARestoreArray(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 10936947451fSStefano Zampini ierr = VecCUDAResetArray(a->cvec);CHKERRQ(ierr); 10946947451fSStefano Zampini *v = NULL; 10956947451fSStefano Zampini PetscFunctionReturn(0); 10966947451fSStefano Zampini } 10976947451fSStefano Zampini 10986947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecRead_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10996947451fSStefano Zampini { 11006947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 11016947451fSStefano Zampini PetscInt lda; 11026947451fSStefano Zampini PetscErrorCode ierr; 11036947451fSStefano Zampini 11046947451fSStefano Zampini PetscFunctionBegin; 1105616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1106616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 11076947451fSStefano Zampini if (!a->cvec) { 11086947451fSStefano Zampini ierr = VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr); 1109616b8fbbSStefano Zampini ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec);CHKERRQ(ierr); 11106947451fSStefano Zampini } 11116947451fSStefano Zampini a->vecinuse = col + 1; 11126947451fSStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 11136947451fSStefano Zampini ierr = MatDenseCUDAGetArrayRead(a->A,&a->ptrinuse);CHKERRQ(ierr); 11146947451fSStefano Zampini ierr = VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr); 11156947451fSStefano Zampini ierr = VecLockReadPush(a->cvec);CHKERRQ(ierr); 11166947451fSStefano Zampini *v = a->cvec; 11176947451fSStefano Zampini PetscFunctionReturn(0); 11186947451fSStefano Zampini } 11196947451fSStefano Zampini 11206947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecRead_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 11216947451fSStefano Zampini { 11226947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 11236947451fSStefano Zampini PetscErrorCode ierr; 11246947451fSStefano Zampini 11256947451fSStefano Zampini PetscFunctionBegin; 1126616b8fbbSStefano Zampini if (!a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 1127616b8fbbSStefano Zampini if (!a->cvec) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 11286947451fSStefano Zampini a->vecinuse = 0; 11296947451fSStefano Zampini ierr = MatDenseCUDARestoreArrayRead(a->A,&a->ptrinuse);CHKERRQ(ierr); 11306947451fSStefano Zampini ierr = VecLockReadPop(a->cvec);CHKERRQ(ierr); 11316947451fSStefano Zampini ierr = VecCUDAResetArray(a->cvec);CHKERRQ(ierr); 11326947451fSStefano Zampini *v = NULL; 11336947451fSStefano Zampini PetscFunctionReturn(0); 11346947451fSStefano Zampini } 11356947451fSStefano Zampini 11366947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecWrite_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 11376947451fSStefano Zampini { 11386947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 11396947451fSStefano Zampini PetscErrorCode ierr; 11406947451fSStefano Zampini PetscInt lda; 11416947451fSStefano Zampini 11426947451fSStefano Zampini PetscFunctionBegin; 1143616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1144616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 11456947451fSStefano Zampini if (!a->cvec) { 11466947451fSStefano Zampini ierr = VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr); 1147616b8fbbSStefano Zampini ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec);CHKERRQ(ierr); 11486947451fSStefano Zampini } 11496947451fSStefano Zampini a->vecinuse = col + 1; 11506947451fSStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 11516947451fSStefano Zampini ierr = MatDenseCUDAGetArrayWrite(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 11526947451fSStefano Zampini ierr = VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr); 11536947451fSStefano Zampini *v = a->cvec; 11546947451fSStefano Zampini PetscFunctionReturn(0); 11556947451fSStefano Zampini } 11566947451fSStefano Zampini 11576947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 11586947451fSStefano Zampini { 11596947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 11606947451fSStefano Zampini PetscErrorCode ierr; 11616947451fSStefano Zampini 11626947451fSStefano Zampini PetscFunctionBegin; 1163616b8fbbSStefano Zampini if (!a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 1164616b8fbbSStefano Zampini if (!a->cvec) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 11656947451fSStefano Zampini a->vecinuse = 0; 11666947451fSStefano Zampini ierr = MatDenseCUDARestoreArrayWrite(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 11676947451fSStefano Zampini ierr = VecCUDAResetArray(a->cvec);CHKERRQ(ierr); 11686947451fSStefano Zampini *v = NULL; 11696947451fSStefano Zampini PetscFunctionReturn(0); 11706947451fSStefano Zampini } 11716947451fSStefano Zampini 1172637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAPlaceArray_MPIDenseCUDA(Mat A, const PetscScalar *a) 1173637a0070SStefano Zampini { 1174637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1175637a0070SStefano Zampini PetscErrorCode ierr; 1176637a0070SStefano Zampini 1177637a0070SStefano Zampini PetscFunctionBegin; 1178616b8fbbSStefano Zampini if (l->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1179616b8fbbSStefano Zampini if (l->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1180637a0070SStefano Zampini ierr = MatDenseCUDAPlaceArray(l->A,a);CHKERRQ(ierr); 1181637a0070SStefano Zampini PetscFunctionReturn(0); 1182637a0070SStefano Zampini } 1183637a0070SStefano Zampini 1184637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAResetArray_MPIDenseCUDA(Mat A) 1185637a0070SStefano Zampini { 1186637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1187637a0070SStefano Zampini PetscErrorCode ierr; 1188637a0070SStefano Zampini 1189637a0070SStefano Zampini PetscFunctionBegin; 1190616b8fbbSStefano Zampini if (l->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1191616b8fbbSStefano Zampini if (l->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1192637a0070SStefano Zampini ierr = MatDenseCUDAResetArray(l->A);CHKERRQ(ierr); 1193637a0070SStefano Zampini PetscFunctionReturn(0); 1194637a0070SStefano Zampini } 1195637a0070SStefano Zampini 1196d5ea218eSStefano Zampini static PetscErrorCode MatDenseCUDAReplaceArray_MPIDenseCUDA(Mat A, const PetscScalar *a) 1197d5ea218eSStefano Zampini { 1198d5ea218eSStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1199d5ea218eSStefano Zampini PetscErrorCode ierr; 1200d5ea218eSStefano Zampini 1201d5ea218eSStefano Zampini PetscFunctionBegin; 1202616b8fbbSStefano Zampini if (l->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1203616b8fbbSStefano Zampini if (l->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1204d5ea218eSStefano Zampini ierr = MatDenseCUDAReplaceArray(l->A,a);CHKERRQ(ierr); 1205d5ea218eSStefano Zampini PetscFunctionReturn(0); 1206d5ea218eSStefano Zampini } 1207d5ea218eSStefano Zampini 1208637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArrayWrite_MPIDenseCUDA(Mat A, PetscScalar **a) 1209637a0070SStefano Zampini { 1210637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1211637a0070SStefano Zampini PetscErrorCode ierr; 1212637a0070SStefano Zampini 1213637a0070SStefano Zampini PetscFunctionBegin; 1214637a0070SStefano Zampini ierr = MatDenseCUDAGetArrayWrite(l->A,a);CHKERRQ(ierr); 1215637a0070SStefano Zampini PetscFunctionReturn(0); 1216637a0070SStefano Zampini } 1217637a0070SStefano Zampini 1218637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArrayWrite_MPIDenseCUDA(Mat A, PetscScalar **a) 1219637a0070SStefano Zampini { 1220637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1221637a0070SStefano Zampini PetscErrorCode ierr; 1222637a0070SStefano Zampini 1223637a0070SStefano Zampini PetscFunctionBegin; 1224637a0070SStefano Zampini ierr = MatDenseCUDARestoreArrayWrite(l->A,a);CHKERRQ(ierr); 1225637a0070SStefano Zampini PetscFunctionReturn(0); 1226637a0070SStefano Zampini } 1227637a0070SStefano Zampini 1228637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArrayRead_MPIDenseCUDA(Mat A, const PetscScalar **a) 1229637a0070SStefano Zampini { 1230637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1231637a0070SStefano Zampini PetscErrorCode ierr; 1232637a0070SStefano Zampini 1233637a0070SStefano Zampini PetscFunctionBegin; 1234637a0070SStefano Zampini ierr = MatDenseCUDAGetArrayRead(l->A,a);CHKERRQ(ierr); 1235637a0070SStefano Zampini PetscFunctionReturn(0); 1236637a0070SStefano Zampini } 1237637a0070SStefano Zampini 1238637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArrayRead_MPIDenseCUDA(Mat A, const PetscScalar **a) 1239637a0070SStefano Zampini { 1240637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1241637a0070SStefano Zampini PetscErrorCode ierr; 1242637a0070SStefano Zampini 1243637a0070SStefano Zampini PetscFunctionBegin; 1244637a0070SStefano Zampini ierr = MatDenseCUDARestoreArrayRead(l->A,a);CHKERRQ(ierr); 1245637a0070SStefano Zampini PetscFunctionReturn(0); 1246637a0070SStefano Zampini } 1247637a0070SStefano Zampini 1248637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArray_MPIDenseCUDA(Mat A, PetscScalar **a) 1249637a0070SStefano Zampini { 1250637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1251637a0070SStefano Zampini PetscErrorCode ierr; 1252637a0070SStefano Zampini 1253637a0070SStefano Zampini PetscFunctionBegin; 1254637a0070SStefano Zampini ierr = MatDenseCUDAGetArray(l->A,a);CHKERRQ(ierr); 1255637a0070SStefano Zampini PetscFunctionReturn(0); 1256637a0070SStefano Zampini } 1257637a0070SStefano Zampini 1258637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArray_MPIDenseCUDA(Mat A, PetscScalar **a) 1259637a0070SStefano Zampini { 1260637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1261637a0070SStefano Zampini PetscErrorCode ierr; 1262637a0070SStefano Zampini 1263637a0070SStefano Zampini PetscFunctionBegin; 1264637a0070SStefano Zampini ierr = MatDenseCUDARestoreArray(l->A,a);CHKERRQ(ierr); 1265637a0070SStefano Zampini PetscFunctionReturn(0); 1266637a0070SStefano Zampini } 1267637a0070SStefano Zampini 12686947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecWrite_MPIDense(Mat,PetscInt,Vec*); 12696947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecRead_MPIDense(Mat,PetscInt,Vec*); 12706947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVec_MPIDense(Mat,PetscInt,Vec*); 12716947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDense(Mat,PetscInt,Vec*); 12726947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecRead_MPIDense(Mat,PetscInt,Vec*); 12736947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVec_MPIDense(Mat,PetscInt,Vec*); 12745ea7661aSPierre Jolivet static PetscErrorCode MatDenseRestoreSubMatrix_MPIDense(Mat,Mat*); 12756947451fSStefano Zampini 1276637a0070SStefano Zampini static PetscErrorCode MatBindToCPU_MPIDenseCUDA(Mat mat,PetscBool bind) 1277637a0070SStefano Zampini { 1278637a0070SStefano Zampini Mat_MPIDense *d = (Mat_MPIDense*)mat->data; 1279637a0070SStefano Zampini PetscErrorCode ierr; 1280637a0070SStefano Zampini 1281637a0070SStefano Zampini PetscFunctionBegin; 1282616b8fbbSStefano Zampini if (d->vecinuse) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1283616b8fbbSStefano Zampini if (d->matinuse) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1284637a0070SStefano Zampini if (d->A) { 1285637a0070SStefano Zampini ierr = MatBindToCPU(d->A,bind);CHKERRQ(ierr); 1286637a0070SStefano Zampini } 1287637a0070SStefano Zampini mat->boundtocpu = bind; 12886947451fSStefano Zampini if (!bind) { 12896947451fSStefano Zampini PetscBool iscuda; 12906947451fSStefano Zampini 12916947451fSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)d->cvec,VECMPICUDA,&iscuda);CHKERRQ(ierr); 12926947451fSStefano Zampini if (!iscuda) { 12936947451fSStefano Zampini ierr = VecDestroy(&d->cvec);CHKERRQ(ierr); 1294616b8fbbSStefano Zampini } 1295616b8fbbSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)d->cmat,MATMPIDENSECUDA,&iscuda);CHKERRQ(ierr); 1296616b8fbbSStefano Zampini if (!iscuda) { 12975ea7661aSPierre Jolivet ierr = MatDestroy(&d->cmat);CHKERRQ(ierr); 12986947451fSStefano Zampini } 12996947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDenseCUDA);CHKERRQ(ierr); 13006947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDenseCUDA);CHKERRQ(ierr); 13016947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDenseCUDA);CHKERRQ(ierr); 13026947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDenseCUDA);CHKERRQ(ierr); 13036947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDenseCUDA);CHKERRQ(ierr); 13046947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDenseCUDA);CHKERRQ(ierr); 13056947451fSStefano Zampini } else { 13066947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDense);CHKERRQ(ierr); 13076947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDense);CHKERRQ(ierr); 13086947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDense);CHKERRQ(ierr); 13096947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDense);CHKERRQ(ierr); 13106947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDense);CHKERRQ(ierr); 13116947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDense);CHKERRQ(ierr); 1312616b8fbbSStefano Zampini } 1313616b8fbbSStefano Zampini if (d->cmat) { 1314616b8fbbSStefano Zampini ierr = MatBindToCPU(d->cmat,bind);CHKERRQ(ierr); 13156947451fSStefano Zampini } 1316637a0070SStefano Zampini PetscFunctionReturn(0); 1317637a0070SStefano Zampini } 1318637a0070SStefano Zampini 1319637a0070SStefano Zampini PetscErrorCode MatMPIDenseCUDASetPreallocation(Mat A, PetscScalar *d_data) 1320637a0070SStefano Zampini { 1321637a0070SStefano Zampini Mat_MPIDense *d = (Mat_MPIDense*)A->data; 1322637a0070SStefano Zampini PetscErrorCode ierr; 1323637a0070SStefano Zampini PetscBool iscuda; 1324637a0070SStefano Zampini 1325637a0070SStefano Zampini PetscFunctionBegin; 1326d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 1327637a0070SStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIDENSECUDA,&iscuda);CHKERRQ(ierr); 1328637a0070SStefano Zampini if (!iscuda) PetscFunctionReturn(0); 1329637a0070SStefano Zampini ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr); 1330637a0070SStefano Zampini ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr); 1331637a0070SStefano Zampini if (!d->A) { 1332637a0070SStefano Zampini ierr = MatCreate(PETSC_COMM_SELF,&d->A);CHKERRQ(ierr); 1333637a0070SStefano Zampini ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)d->A);CHKERRQ(ierr); 1334637a0070SStefano Zampini ierr = MatSetSizes(d->A,A->rmap->n,A->cmap->N,A->rmap->n,A->cmap->N);CHKERRQ(ierr); 1335637a0070SStefano Zampini } 1336637a0070SStefano Zampini ierr = MatSetType(d->A,MATSEQDENSECUDA);CHKERRQ(ierr); 1337637a0070SStefano Zampini ierr = MatSeqDenseCUDASetPreallocation(d->A,d_data);CHKERRQ(ierr); 1338637a0070SStefano Zampini A->preallocated = PETSC_TRUE; 1339637a0070SStefano Zampini PetscFunctionReturn(0); 1340637a0070SStefano Zampini } 1341637a0070SStefano Zampini #endif 1342637a0070SStefano Zampini 134373a71a0fSBarry Smith static PetscErrorCode MatSetRandom_MPIDense(Mat x,PetscRandom rctx) 134473a71a0fSBarry Smith { 134573a71a0fSBarry Smith Mat_MPIDense *d = (Mat_MPIDense*)x->data; 134673a71a0fSBarry Smith PetscErrorCode ierr; 134773a71a0fSBarry Smith 134873a71a0fSBarry Smith PetscFunctionBegin; 1349637a0070SStefano Zampini ierr = MatSetRandom(d->A,rctx);CHKERRQ(ierr); 135073a71a0fSBarry Smith PetscFunctionReturn(0); 135173a71a0fSBarry Smith } 135273a71a0fSBarry Smith 13533b49f96aSBarry Smith static PetscErrorCode MatMissingDiagonal_MPIDense(Mat A,PetscBool *missing,PetscInt *d) 13543b49f96aSBarry Smith { 13553b49f96aSBarry Smith PetscFunctionBegin; 13563b49f96aSBarry Smith *missing = PETSC_FALSE; 13573b49f96aSBarry Smith PetscFunctionReturn(0); 13583b49f96aSBarry Smith } 13593b49f96aSBarry Smith 13604222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat,Mat,PetscReal,Mat); 1361cc48ffa7SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat,Mat,Mat); 13626718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat,Mat,Mat); 13636718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat,Mat,PetscReal,Mat); 13646718818eSStefano Zampini static PetscErrorCode MatEqual_MPIDense(Mat,Mat,PetscBool*); 13656718818eSStefano Zampini static PetscErrorCode MatLoad_MPIDense(Mat,PetscViewer); 1366cc48ffa7SToby Isaac 13678965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/ 136809dc0095SBarry Smith static struct _MatOps MatOps_Values = { MatSetValues_MPIDense, 136909dc0095SBarry Smith MatGetRow_MPIDense, 137009dc0095SBarry Smith MatRestoreRow_MPIDense, 137109dc0095SBarry Smith MatMult_MPIDense, 137297304618SKris Buschelman /* 4*/ MatMultAdd_MPIDense, 13737c922b88SBarry Smith MatMultTranspose_MPIDense, 13747c922b88SBarry Smith MatMultTransposeAdd_MPIDense, 1375f4259b30SLisandro Dalcin NULL, 1376f4259b30SLisandro Dalcin NULL, 1377f4259b30SLisandro Dalcin NULL, 1378f4259b30SLisandro Dalcin /* 10*/ NULL, 1379f4259b30SLisandro Dalcin NULL, 1380f4259b30SLisandro Dalcin NULL, 1381f4259b30SLisandro Dalcin NULL, 138209dc0095SBarry Smith MatTranspose_MPIDense, 138397304618SKris Buschelman /* 15*/ MatGetInfo_MPIDense, 13846e4ee0c6SHong Zhang MatEqual_MPIDense, 138509dc0095SBarry Smith MatGetDiagonal_MPIDense, 13865b2fa520SLois Curfman McInnes MatDiagonalScale_MPIDense, 138709dc0095SBarry Smith MatNorm_MPIDense, 138897304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPIDense, 138909dc0095SBarry Smith MatAssemblyEnd_MPIDense, 139009dc0095SBarry Smith MatSetOption_MPIDense, 139109dc0095SBarry Smith MatZeroEntries_MPIDense, 1392d519adbfSMatthew Knepley /* 24*/ MatZeroRows_MPIDense, 1393f4259b30SLisandro Dalcin NULL, 1394f4259b30SLisandro Dalcin NULL, 1395f4259b30SLisandro Dalcin NULL, 1396f4259b30SLisandro Dalcin NULL, 13974994cf47SJed Brown /* 29*/ MatSetUp_MPIDense, 1398f4259b30SLisandro Dalcin NULL, 1399f4259b30SLisandro Dalcin NULL, 1400c56a70eeSBarry Smith MatGetDiagonalBlock_MPIDense, 1401f4259b30SLisandro Dalcin NULL, 1402d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPIDense, 1403f4259b30SLisandro Dalcin NULL, 1404f4259b30SLisandro Dalcin NULL, 1405f4259b30SLisandro Dalcin NULL, 1406f4259b30SLisandro Dalcin NULL, 1407d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPIDense, 14087dae84e0SHong Zhang MatCreateSubMatrices_MPIDense, 1409f4259b30SLisandro Dalcin NULL, 141009dc0095SBarry Smith MatGetValues_MPIDense, 1411a76f77c3SStefano Zampini MatCopy_MPIDense, 1412f4259b30SLisandro Dalcin /* 44*/ NULL, 141309dc0095SBarry Smith MatScale_MPIDense, 14147d68702bSBarry Smith MatShift_Basic, 1415f4259b30SLisandro Dalcin NULL, 1416f4259b30SLisandro Dalcin NULL, 141773a71a0fSBarry Smith /* 49*/ MatSetRandom_MPIDense, 1418f4259b30SLisandro Dalcin NULL, 1419f4259b30SLisandro Dalcin NULL, 1420f4259b30SLisandro Dalcin NULL, 1421f4259b30SLisandro Dalcin NULL, 1422f4259b30SLisandro Dalcin /* 54*/ NULL, 1423f4259b30SLisandro Dalcin NULL, 1424f4259b30SLisandro Dalcin NULL, 1425f4259b30SLisandro Dalcin NULL, 1426f4259b30SLisandro Dalcin NULL, 14277dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPIDense, 1428b9b97703SBarry Smith MatDestroy_MPIDense, 1429b9b97703SBarry Smith MatView_MPIDense, 1430f4259b30SLisandro Dalcin NULL, 1431f4259b30SLisandro Dalcin NULL, 1432f4259b30SLisandro Dalcin /* 64*/ NULL, 1433f4259b30SLisandro Dalcin NULL, 1434f4259b30SLisandro Dalcin NULL, 1435f4259b30SLisandro Dalcin NULL, 1436f4259b30SLisandro Dalcin NULL, 1437f4259b30SLisandro Dalcin /* 69*/ NULL, 1438f4259b30SLisandro Dalcin NULL, 1439f4259b30SLisandro Dalcin NULL, 1440f4259b30SLisandro Dalcin NULL, 1441f4259b30SLisandro Dalcin NULL, 1442f4259b30SLisandro Dalcin /* 74*/ NULL, 1443f4259b30SLisandro Dalcin NULL, 1444f4259b30SLisandro Dalcin NULL, 1445f4259b30SLisandro Dalcin NULL, 1446f4259b30SLisandro Dalcin NULL, 1447f4259b30SLisandro Dalcin /* 79*/ NULL, 1448f4259b30SLisandro Dalcin NULL, 1449f4259b30SLisandro Dalcin NULL, 1450f4259b30SLisandro Dalcin NULL, 14515bba2384SShri Abhyankar /* 83*/ MatLoad_MPIDense, 1452f4259b30SLisandro Dalcin NULL, 1453f4259b30SLisandro Dalcin NULL, 1454f4259b30SLisandro Dalcin NULL, 1455f4259b30SLisandro Dalcin NULL, 1456f4259b30SLisandro Dalcin NULL, 1457f4259b30SLisandro Dalcin /* 89*/ NULL, 1458f4259b30SLisandro Dalcin NULL, 1459f4259b30SLisandro Dalcin NULL, 1460f4259b30SLisandro Dalcin NULL, 1461f4259b30SLisandro Dalcin NULL, 1462f4259b30SLisandro Dalcin /* 94*/ NULL, 1463f4259b30SLisandro Dalcin NULL, 14646718818eSStefano Zampini MatMatTransposeMultSymbolic_MPIDense_MPIDense, 1465cc48ffa7SToby Isaac MatMatTransposeMultNumeric_MPIDense_MPIDense, 1466f4259b30SLisandro Dalcin NULL, 14674222ddf1SHong Zhang /* 99*/ MatProductSetFromOptions_MPIDense, 1468f4259b30SLisandro Dalcin NULL, 1469f4259b30SLisandro Dalcin NULL, 1470ba337c44SJed Brown MatConjugate_MPIDense, 1471f4259b30SLisandro Dalcin NULL, 1472f4259b30SLisandro Dalcin /*104*/ NULL, 1473ba337c44SJed Brown MatRealPart_MPIDense, 1474ba337c44SJed Brown MatImaginaryPart_MPIDense, 1475f4259b30SLisandro Dalcin NULL, 1476f4259b30SLisandro Dalcin NULL, 1477f4259b30SLisandro Dalcin /*109*/ NULL, 1478f4259b30SLisandro Dalcin NULL, 1479f4259b30SLisandro Dalcin NULL, 148049a6ff4bSBarry Smith MatGetColumnVector_MPIDense, 14813b49f96aSBarry Smith MatMissingDiagonal_MPIDense, 1482f4259b30SLisandro Dalcin /*114*/ NULL, 1483f4259b30SLisandro Dalcin NULL, 1484f4259b30SLisandro Dalcin NULL, 1485f4259b30SLisandro Dalcin NULL, 1486f4259b30SLisandro Dalcin NULL, 1487f4259b30SLisandro Dalcin /*119*/ NULL, 1488f4259b30SLisandro Dalcin NULL, 1489f4259b30SLisandro Dalcin NULL, 1490f4259b30SLisandro Dalcin NULL, 1491f4259b30SLisandro Dalcin NULL, 1492f4259b30SLisandro Dalcin /*124*/ NULL, 1493a873a8cdSSam Reynolds MatGetColumnReductions_MPIDense, 1494f4259b30SLisandro Dalcin NULL, 1495f4259b30SLisandro Dalcin NULL, 1496f4259b30SLisandro Dalcin NULL, 1497f4259b30SLisandro Dalcin /*129*/ NULL, 1498f4259b30SLisandro Dalcin NULL, 14996718818eSStefano Zampini MatTransposeMatMultSymbolic_MPIDense_MPIDense, 1500cb20be35SHong Zhang MatTransposeMatMultNumeric_MPIDense_MPIDense, 1501f4259b30SLisandro Dalcin NULL, 1502f4259b30SLisandro Dalcin /*134*/ NULL, 1503f4259b30SLisandro Dalcin NULL, 1504f4259b30SLisandro Dalcin NULL, 1505f4259b30SLisandro Dalcin NULL, 1506f4259b30SLisandro Dalcin NULL, 1507f4259b30SLisandro Dalcin /*139*/ NULL, 1508f4259b30SLisandro Dalcin NULL, 1509f4259b30SLisandro Dalcin NULL, 1510f4259b30SLisandro Dalcin NULL, 1511f4259b30SLisandro Dalcin NULL, 15124222ddf1SHong Zhang MatCreateMPIMatConcatenateSeqMat_MPIDense, 1513f4259b30SLisandro Dalcin /*145*/ NULL, 1514f4259b30SLisandro Dalcin NULL, 1515f4259b30SLisandro Dalcin NULL 1516ba337c44SJed Brown }; 15178965ea79SLois Curfman McInnes 15187087cfbeSBarry Smith PetscErrorCode MatMPIDenseSetPreallocation_MPIDense(Mat mat,PetscScalar *data) 1519a23d5eceSKris Buschelman { 1520637a0070SStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)mat->data; 1521637a0070SStefano Zampini PetscBool iscuda; 1522dfbe8321SBarry Smith PetscErrorCode ierr; 1523a23d5eceSKris Buschelman 1524a23d5eceSKris Buschelman PetscFunctionBegin; 1525616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 152634ef9618SShri Abhyankar ierr = PetscLayoutSetUp(mat->rmap);CHKERRQ(ierr); 152734ef9618SShri Abhyankar ierr = PetscLayoutSetUp(mat->cmap);CHKERRQ(ierr); 1528637a0070SStefano Zampini if (!a->A) { 1529f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&a->A);CHKERRQ(ierr); 15303bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 1531637a0070SStefano Zampini ierr = MatSetSizes(a->A,mat->rmap->n,mat->cmap->N,mat->rmap->n,mat->cmap->N);CHKERRQ(ierr); 1532637a0070SStefano Zampini } 1533637a0070SStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)mat,MATMPIDENSECUDA,&iscuda);CHKERRQ(ierr); 1534637a0070SStefano Zampini ierr = MatSetType(a->A,iscuda ? MATSEQDENSECUDA : MATSEQDENSE);CHKERRQ(ierr); 1535637a0070SStefano Zampini ierr = MatSeqDenseSetPreallocation(a->A,data);CHKERRQ(ierr); 1536637a0070SStefano Zampini mat->preallocated = PETSC_TRUE; 1537a23d5eceSKris Buschelman PetscFunctionReturn(0); 1538a23d5eceSKris Buschelman } 1539a23d5eceSKris Buschelman 15404e29119aSPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIDense(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 15414e29119aSPierre Jolivet { 15424e29119aSPierre Jolivet Mat B,C; 15434e29119aSPierre Jolivet PetscErrorCode ierr; 15444e29119aSPierre Jolivet 15454e29119aSPierre Jolivet PetscFunctionBegin; 15464e29119aSPierre Jolivet ierr = MatMPIAIJGetLocalMat(A,MAT_INITIAL_MATRIX,&C);CHKERRQ(ierr); 15474e29119aSPierre Jolivet ierr = MatConvert_SeqAIJ_SeqDense(C,MATSEQDENSE,MAT_INITIAL_MATRIX,&B);CHKERRQ(ierr); 15484e29119aSPierre Jolivet ierr = MatDestroy(&C);CHKERRQ(ierr); 15494e29119aSPierre Jolivet if (reuse == MAT_REUSE_MATRIX) { 15504e29119aSPierre Jolivet C = *newmat; 15514e29119aSPierre Jolivet } else C = NULL; 15524e29119aSPierre Jolivet ierr = MatCreateMPIMatConcatenateSeqMat(PetscObjectComm((PetscObject)A),B,A->cmap->n,!C?MAT_INITIAL_MATRIX:MAT_REUSE_MATRIX,&C);CHKERRQ(ierr); 15534e29119aSPierre Jolivet ierr = MatDestroy(&B);CHKERRQ(ierr); 15544e29119aSPierre Jolivet if (reuse == MAT_INPLACE_MATRIX) { 15554e29119aSPierre Jolivet ierr = MatHeaderReplace(A,&C);CHKERRQ(ierr); 15564e29119aSPierre Jolivet } else if (reuse == MAT_INITIAL_MATRIX) *newmat = C; 15574e29119aSPierre Jolivet PetscFunctionReturn(0); 15584e29119aSPierre Jolivet } 15594e29119aSPierre Jolivet 15604e29119aSPierre Jolivet PetscErrorCode MatConvert_MPIDense_MPIAIJ(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 15614e29119aSPierre Jolivet { 15624e29119aSPierre Jolivet Mat B,C; 15634e29119aSPierre Jolivet PetscErrorCode ierr; 15644e29119aSPierre Jolivet 15654e29119aSPierre Jolivet PetscFunctionBegin; 15664e29119aSPierre Jolivet ierr = MatDenseGetLocalMatrix(A,&C);CHKERRQ(ierr); 15674e29119aSPierre Jolivet ierr = MatConvert_SeqDense_SeqAIJ(C,MATSEQAIJ,MAT_INITIAL_MATRIX,&B);CHKERRQ(ierr); 15684e29119aSPierre Jolivet if (reuse == MAT_REUSE_MATRIX) { 15694e29119aSPierre Jolivet C = *newmat; 15704e29119aSPierre Jolivet } else C = NULL; 15714e29119aSPierre Jolivet ierr = MatCreateMPIMatConcatenateSeqMat(PetscObjectComm((PetscObject)A),B,A->cmap->n,!C?MAT_INITIAL_MATRIX:MAT_REUSE_MATRIX,&C);CHKERRQ(ierr); 15724e29119aSPierre Jolivet ierr = MatDestroy(&B);CHKERRQ(ierr); 15734e29119aSPierre Jolivet if (reuse == MAT_INPLACE_MATRIX) { 15744e29119aSPierre Jolivet ierr = MatHeaderReplace(A,&C);CHKERRQ(ierr); 15754e29119aSPierre Jolivet } else if (reuse == MAT_INITIAL_MATRIX) *newmat = C; 15764e29119aSPierre Jolivet PetscFunctionReturn(0); 15774e29119aSPierre Jolivet } 15784e29119aSPierre Jolivet 157965b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 1580cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIDense_Elemental(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 15818baccfbdSHong Zhang { 15828ea901baSHong Zhang Mat mat_elemental; 15838ea901baSHong Zhang PetscErrorCode ierr; 158432d7a744SHong Zhang PetscScalar *v; 158532d7a744SHong Zhang PetscInt m=A->rmap->n,N=A->cmap->N,rstart=A->rmap->rstart,i,*rows,*cols; 15868ea901baSHong Zhang 15878baccfbdSHong Zhang PetscFunctionBegin; 1588378336b6SHong Zhang if (reuse == MAT_REUSE_MATRIX) { 1589378336b6SHong Zhang mat_elemental = *newmat; 1590378336b6SHong Zhang ierr = MatZeroEntries(*newmat);CHKERRQ(ierr); 1591378336b6SHong Zhang } else { 1592378336b6SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental);CHKERRQ(ierr); 1593378336b6SHong Zhang ierr = MatSetSizes(mat_elemental,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 1594378336b6SHong Zhang ierr = MatSetType(mat_elemental,MATELEMENTAL);CHKERRQ(ierr); 1595378336b6SHong Zhang ierr = MatSetUp(mat_elemental);CHKERRQ(ierr); 159632d7a744SHong Zhang ierr = MatSetOption(mat_elemental,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 1597378336b6SHong Zhang } 1598378336b6SHong Zhang 159932d7a744SHong Zhang ierr = PetscMalloc2(m,&rows,N,&cols);CHKERRQ(ierr); 160032d7a744SHong Zhang for (i=0; i<N; i++) cols[i] = i; 160132d7a744SHong Zhang for (i=0; i<m; i++) rows[i] = rstart + i; 16028ea901baSHong Zhang 1603637a0070SStefano Zampini /* PETSc-Elemental interface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */ 160432d7a744SHong Zhang ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr); 160532d7a744SHong Zhang ierr = MatSetValues(mat_elemental,m,rows,N,cols,v,ADD_VALUES);CHKERRQ(ierr); 16068ea901baSHong Zhang ierr = MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 16078ea901baSHong Zhang ierr = MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 160832d7a744SHong Zhang ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr); 160932d7a744SHong Zhang ierr = PetscFree2(rows,cols);CHKERRQ(ierr); 16108ea901baSHong Zhang 1611511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 161228be2f97SBarry Smith ierr = MatHeaderReplace(A,&mat_elemental);CHKERRQ(ierr); 16138ea901baSHong Zhang } else { 16148ea901baSHong Zhang *newmat = mat_elemental; 16158ea901baSHong Zhang } 16168baccfbdSHong Zhang PetscFunctionReturn(0); 16178baccfbdSHong Zhang } 161865b80a83SHong Zhang #endif 16198baccfbdSHong Zhang 1620af53bab2SHong Zhang static PetscErrorCode MatDenseGetColumn_MPIDense(Mat A,PetscInt col,PetscScalar **vals) 162186aefd0dSHong Zhang { 162286aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 162386aefd0dSHong Zhang PetscErrorCode ierr; 162486aefd0dSHong Zhang 162586aefd0dSHong Zhang PetscFunctionBegin; 162686aefd0dSHong Zhang ierr = MatDenseGetColumn(mat->A,col,vals);CHKERRQ(ierr); 162786aefd0dSHong Zhang PetscFunctionReturn(0); 162886aefd0dSHong Zhang } 162986aefd0dSHong Zhang 1630af53bab2SHong Zhang static PetscErrorCode MatDenseRestoreColumn_MPIDense(Mat A,PetscScalar **vals) 163186aefd0dSHong Zhang { 163286aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 163386aefd0dSHong Zhang PetscErrorCode ierr; 163486aefd0dSHong Zhang 163586aefd0dSHong Zhang PetscFunctionBegin; 163686aefd0dSHong Zhang ierr = MatDenseRestoreColumn(mat->A,vals);CHKERRQ(ierr); 163786aefd0dSHong Zhang PetscFunctionReturn(0); 163886aefd0dSHong Zhang } 163986aefd0dSHong Zhang 164094e2cb23SJakub Kruzik PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIDense(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 164194e2cb23SJakub Kruzik { 164294e2cb23SJakub Kruzik PetscErrorCode ierr; 164394e2cb23SJakub Kruzik Mat_MPIDense *mat; 164494e2cb23SJakub Kruzik PetscInt m,nloc,N; 164594e2cb23SJakub Kruzik 164694e2cb23SJakub Kruzik PetscFunctionBegin; 164794e2cb23SJakub Kruzik ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr); 164894e2cb23SJakub Kruzik ierr = MatGetLocalSize(inmat,NULL,&nloc);CHKERRQ(ierr); 164994e2cb23SJakub Kruzik if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 165094e2cb23SJakub Kruzik PetscInt sum; 165194e2cb23SJakub Kruzik 165294e2cb23SJakub Kruzik if (n == PETSC_DECIDE) { 165394e2cb23SJakub Kruzik ierr = PetscSplitOwnership(comm,&n,&N);CHKERRQ(ierr); 165494e2cb23SJakub Kruzik } 165594e2cb23SJakub Kruzik /* Check sum(n) = N */ 1656820f2d46SBarry Smith ierr = MPIU_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm);CHKERRMPI(ierr); 165794e2cb23SJakub Kruzik if (sum != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns %D != global columns %D",sum,N); 165894e2cb23SJakub Kruzik 165994e2cb23SJakub Kruzik ierr = MatCreateDense(comm,m,n,PETSC_DETERMINE,N,NULL,outmat);CHKERRQ(ierr); 1660f2e2784eSPierre Jolivet ierr = MatSetOption(*outmat,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE);CHKERRQ(ierr); 166194e2cb23SJakub Kruzik } 166294e2cb23SJakub Kruzik 166394e2cb23SJakub Kruzik /* numeric phase */ 166494e2cb23SJakub Kruzik mat = (Mat_MPIDense*)(*outmat)->data; 166594e2cb23SJakub Kruzik ierr = MatCopy(inmat,mat->A,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 166694e2cb23SJakub Kruzik ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 166794e2cb23SJakub Kruzik ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 166894e2cb23SJakub Kruzik PetscFunctionReturn(0); 166994e2cb23SJakub Kruzik } 167094e2cb23SJakub Kruzik 1671637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1672637a0070SStefano Zampini PetscErrorCode MatConvert_MPIDenseCUDA_MPIDense(Mat M,MatType type,MatReuse reuse,Mat *newmat) 1673637a0070SStefano Zampini { 1674637a0070SStefano Zampini Mat B; 1675637a0070SStefano Zampini Mat_MPIDense *m; 1676637a0070SStefano Zampini PetscErrorCode ierr; 1677637a0070SStefano Zampini 1678637a0070SStefano Zampini PetscFunctionBegin; 1679637a0070SStefano Zampini if (reuse == MAT_INITIAL_MATRIX) { 1680637a0070SStefano Zampini ierr = MatDuplicate(M,MAT_COPY_VALUES,newmat);CHKERRQ(ierr); 1681637a0070SStefano Zampini } else if (reuse == MAT_REUSE_MATRIX) { 1682637a0070SStefano Zampini ierr = MatCopy(M,*newmat,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 1683637a0070SStefano Zampini } 1684637a0070SStefano Zampini 1685637a0070SStefano Zampini B = *newmat; 1686637a0070SStefano Zampini ierr = MatBindToCPU_MPIDenseCUDA(B,PETSC_TRUE);CHKERRQ(ierr); 1687637a0070SStefano Zampini ierr = PetscFree(B->defaultvectype);CHKERRQ(ierr); 1688637a0070SStefano Zampini ierr = PetscStrallocpy(VECSTANDARD,&B->defaultvectype);CHKERRQ(ierr); 1689637a0070SStefano Zampini ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIDENSE);CHKERRQ(ierr); 1690637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpidensecuda_mpidense_C",NULL);CHKERRQ(ierr); 1691637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaij_mpidensecuda_C",NULL);CHKERRQ(ierr); 16926718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaijcusparse_mpidensecuda_C",NULL);CHKERRQ(ierr); 1693637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaij_C",NULL);CHKERRQ(ierr); 16946718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaijcusparse_C",NULL);CHKERRQ(ierr); 1695637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArray_C",NULL);CHKERRQ(ierr); 1696637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayRead_C",NULL);CHKERRQ(ierr); 1697637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayWrite_C",NULL);CHKERRQ(ierr); 1698637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArray_C",NULL);CHKERRQ(ierr); 1699637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayRead_C",NULL);CHKERRQ(ierr); 1700637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayWrite_C",NULL);CHKERRQ(ierr); 1701637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAPlaceArray_C",NULL);CHKERRQ(ierr); 1702637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAResetArray_C",NULL);CHKERRQ(ierr); 1703d5ea218eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAReplaceArray_C",NULL);CHKERRQ(ierr); 1704637a0070SStefano Zampini m = (Mat_MPIDense*)(B)->data; 1705637a0070SStefano Zampini if (m->A) { 1706637a0070SStefano Zampini ierr = MatConvert(m->A,MATSEQDENSE,MAT_INPLACE_MATRIX,&m->A);CHKERRQ(ierr); 1707637a0070SStefano Zampini ierr = MatSetUpMultiply_MPIDense(B);CHKERRQ(ierr); 1708637a0070SStefano Zampini } 1709637a0070SStefano Zampini B->ops->bindtocpu = NULL; 1710637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_CPU; 1711637a0070SStefano Zampini PetscFunctionReturn(0); 1712637a0070SStefano Zampini } 1713637a0070SStefano Zampini 1714637a0070SStefano Zampini PetscErrorCode MatConvert_MPIDense_MPIDenseCUDA(Mat M,MatType type,MatReuse reuse,Mat *newmat) 1715637a0070SStefano Zampini { 1716637a0070SStefano Zampini Mat B; 1717637a0070SStefano Zampini Mat_MPIDense *m; 1718637a0070SStefano Zampini PetscErrorCode ierr; 1719637a0070SStefano Zampini 1720637a0070SStefano Zampini PetscFunctionBegin; 1721637a0070SStefano Zampini if (reuse == MAT_INITIAL_MATRIX) { 1722637a0070SStefano Zampini ierr = MatDuplicate(M,MAT_COPY_VALUES,newmat);CHKERRQ(ierr); 1723637a0070SStefano Zampini } else if (reuse == MAT_REUSE_MATRIX) { 1724637a0070SStefano Zampini ierr = MatCopy(M,*newmat,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 1725637a0070SStefano Zampini } 1726637a0070SStefano Zampini 1727637a0070SStefano Zampini B = *newmat; 1728637a0070SStefano Zampini ierr = PetscFree(B->defaultvectype);CHKERRQ(ierr); 1729637a0070SStefano Zampini ierr = PetscStrallocpy(VECCUDA,&B->defaultvectype);CHKERRQ(ierr); 1730637a0070SStefano Zampini ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIDENSECUDA);CHKERRQ(ierr); 1731637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpidensecuda_mpidense_C", MatConvert_MPIDenseCUDA_MPIDense);CHKERRQ(ierr); 1732637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaij_mpidensecuda_C", MatProductSetFromOptions_MPIAIJ_MPIDense);CHKERRQ(ierr); 17336718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaijcusparse_mpidensecuda_C",MatProductSetFromOptions_MPIAIJ_MPIDense);CHKERRQ(ierr); 1734637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaij_C", MatProductSetFromOptions_MPIDense_MPIAIJ);CHKERRQ(ierr); 17356718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaijcusparse_C",MatProductSetFromOptions_MPIDense_MPIAIJ);CHKERRQ(ierr); 1736637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArray_C", MatDenseCUDAGetArray_MPIDenseCUDA);CHKERRQ(ierr); 1737637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayRead_C", MatDenseCUDAGetArrayRead_MPIDenseCUDA);CHKERRQ(ierr); 1738637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayWrite_C", MatDenseCUDAGetArrayWrite_MPIDenseCUDA);CHKERRQ(ierr); 1739637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArray_C", MatDenseCUDARestoreArray_MPIDenseCUDA);CHKERRQ(ierr); 1740637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayRead_C", MatDenseCUDARestoreArrayRead_MPIDenseCUDA);CHKERRQ(ierr); 1741637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayWrite_C", MatDenseCUDARestoreArrayWrite_MPIDenseCUDA);CHKERRQ(ierr); 1742637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAPlaceArray_C", MatDenseCUDAPlaceArray_MPIDenseCUDA);CHKERRQ(ierr); 1743637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAResetArray_C", MatDenseCUDAResetArray_MPIDenseCUDA);CHKERRQ(ierr); 1744d5ea218eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAReplaceArray_C", MatDenseCUDAReplaceArray_MPIDenseCUDA);CHKERRQ(ierr); 1745f5ff9c66SStefano Zampini m = (Mat_MPIDense*)(B->data); 1746637a0070SStefano Zampini if (m->A) { 1747637a0070SStefano Zampini ierr = MatConvert(m->A,MATSEQDENSECUDA,MAT_INPLACE_MATRIX,&m->A);CHKERRQ(ierr); 1748637a0070SStefano Zampini ierr = MatSetUpMultiply_MPIDense(B);CHKERRQ(ierr); 1749637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_BOTH; 1750637a0070SStefano Zampini } else { 1751637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_UNALLOCATED; 1752637a0070SStefano Zampini } 1753637a0070SStefano Zampini ierr = MatBindToCPU_MPIDenseCUDA(B,PETSC_FALSE);CHKERRQ(ierr); 1754637a0070SStefano Zampini 1755637a0070SStefano Zampini B->ops->bindtocpu = MatBindToCPU_MPIDenseCUDA; 1756637a0070SStefano Zampini PetscFunctionReturn(0); 1757637a0070SStefano Zampini } 1758637a0070SStefano Zampini #endif 1759637a0070SStefano Zampini 17606947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVec_MPIDense(Mat A,PetscInt col,Vec *v) 17616947451fSStefano Zampini { 17626947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17636947451fSStefano Zampini PetscErrorCode ierr; 17646947451fSStefano Zampini PetscInt lda; 17656947451fSStefano Zampini 17666947451fSStefano Zampini PetscFunctionBegin; 1767616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1768616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 17696947451fSStefano Zampini if (!a->cvec) { 17706947451fSStefano Zampini ierr = VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr); 17716947451fSStefano Zampini } 17726947451fSStefano Zampini a->vecinuse = col + 1; 17736947451fSStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 17746947451fSStefano Zampini ierr = MatDenseGetArray(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 17756947451fSStefano Zampini ierr = VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr); 17766947451fSStefano Zampini *v = a->cvec; 17776947451fSStefano Zampini PetscFunctionReturn(0); 17786947451fSStefano Zampini } 17796947451fSStefano Zampini 17806947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVec_MPIDense(Mat A,PetscInt col,Vec *v) 17816947451fSStefano Zampini { 17826947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17836947451fSStefano Zampini PetscErrorCode ierr; 17846947451fSStefano Zampini 17856947451fSStefano Zampini PetscFunctionBegin; 17865ea7661aSPierre Jolivet if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 17876947451fSStefano Zampini if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector"); 17886947451fSStefano Zampini a->vecinuse = 0; 17896947451fSStefano Zampini ierr = MatDenseRestoreArray(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 17906947451fSStefano Zampini ierr = VecResetArray(a->cvec);CHKERRQ(ierr); 17916947451fSStefano Zampini *v = NULL; 17926947451fSStefano Zampini PetscFunctionReturn(0); 17936947451fSStefano Zampini } 17946947451fSStefano Zampini 17956947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecRead_MPIDense(Mat A,PetscInt col,Vec *v) 17966947451fSStefano Zampini { 17976947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17986947451fSStefano Zampini PetscErrorCode ierr; 17996947451fSStefano Zampini PetscInt lda; 18006947451fSStefano Zampini 18016947451fSStefano Zampini PetscFunctionBegin; 1802616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1803616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 18046947451fSStefano Zampini if (!a->cvec) { 18056947451fSStefano Zampini ierr = VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr); 18066947451fSStefano Zampini } 18076947451fSStefano Zampini a->vecinuse = col + 1; 18086947451fSStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 18096947451fSStefano Zampini ierr = MatDenseGetArrayRead(a->A,&a->ptrinuse);CHKERRQ(ierr); 18106947451fSStefano Zampini ierr = VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr); 18116947451fSStefano Zampini ierr = VecLockReadPush(a->cvec);CHKERRQ(ierr); 18126947451fSStefano Zampini *v = a->cvec; 18136947451fSStefano Zampini PetscFunctionReturn(0); 18146947451fSStefano Zampini } 18156947451fSStefano Zampini 18166947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecRead_MPIDense(Mat A,PetscInt col,Vec *v) 18176947451fSStefano Zampini { 18186947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 18196947451fSStefano Zampini PetscErrorCode ierr; 18206947451fSStefano Zampini 18216947451fSStefano Zampini PetscFunctionBegin; 1822616b8fbbSStefano Zampini if (!a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 1823616b8fbbSStefano Zampini if (!a->cvec) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 18246947451fSStefano Zampini a->vecinuse = 0; 18256947451fSStefano Zampini ierr = MatDenseRestoreArrayRead(a->A,&a->ptrinuse);CHKERRQ(ierr); 18266947451fSStefano Zampini ierr = VecLockReadPop(a->cvec);CHKERRQ(ierr); 18276947451fSStefano Zampini ierr = VecResetArray(a->cvec);CHKERRQ(ierr); 18286947451fSStefano Zampini *v = NULL; 18296947451fSStefano Zampini PetscFunctionReturn(0); 18306947451fSStefano Zampini } 18316947451fSStefano Zampini 18326947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecWrite_MPIDense(Mat A,PetscInt col,Vec *v) 18336947451fSStefano Zampini { 18346947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 18356947451fSStefano Zampini PetscErrorCode ierr; 18366947451fSStefano Zampini PetscInt lda; 18376947451fSStefano Zampini 18386947451fSStefano Zampini PetscFunctionBegin; 1839616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1840616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 18416947451fSStefano Zampini if (!a->cvec) { 18426947451fSStefano Zampini ierr = VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr); 18436947451fSStefano Zampini } 18446947451fSStefano Zampini a->vecinuse = col + 1; 18456947451fSStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 18466947451fSStefano Zampini ierr = MatDenseGetArrayWrite(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 18476947451fSStefano Zampini ierr = VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr); 18486947451fSStefano Zampini *v = a->cvec; 18496947451fSStefano Zampini PetscFunctionReturn(0); 18506947451fSStefano Zampini } 18516947451fSStefano Zampini 18526947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDense(Mat A,PetscInt col,Vec *v) 18536947451fSStefano Zampini { 18546947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 18556947451fSStefano Zampini PetscErrorCode ierr; 18566947451fSStefano Zampini 18576947451fSStefano Zampini PetscFunctionBegin; 1858616b8fbbSStefano Zampini if (!a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 1859616b8fbbSStefano Zampini if (!a->cvec) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 18606947451fSStefano Zampini a->vecinuse = 0; 18616947451fSStefano Zampini ierr = MatDenseRestoreArrayWrite(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 18626947451fSStefano Zampini ierr = VecResetArray(a->cvec);CHKERRQ(ierr); 18636947451fSStefano Zampini *v = NULL; 18646947451fSStefano Zampini PetscFunctionReturn(0); 18656947451fSStefano Zampini } 18666947451fSStefano Zampini 18675ea7661aSPierre Jolivet PetscErrorCode MatDenseGetSubMatrix_MPIDense(Mat A,PetscInt cbegin,PetscInt cend,Mat *v) 18685ea7661aSPierre Jolivet { 18695ea7661aSPierre Jolivet Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1870616b8fbbSStefano Zampini Mat_MPIDense *c; 18715ea7661aSPierre Jolivet PetscErrorCode ierr; 1872616b8fbbSStefano Zampini MPI_Comm comm; 1873616b8fbbSStefano Zampini PetscBool setup = PETSC_FALSE; 18745ea7661aSPierre Jolivet 18755ea7661aSPierre Jolivet PetscFunctionBegin; 1876616b8fbbSStefano Zampini ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 1877616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(comm,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1878616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(comm,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 18795ea7661aSPierre Jolivet if (!a->cmat) { 1880616b8fbbSStefano Zampini setup = PETSC_TRUE; 1881616b8fbbSStefano Zampini ierr = MatCreate(comm,&a->cmat);CHKERRQ(ierr); 1882616b8fbbSStefano Zampini ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)a->cmat);CHKERRQ(ierr); 1883616b8fbbSStefano Zampini ierr = MatSetType(a->cmat,((PetscObject)A)->type_name);CHKERRQ(ierr); 1884616b8fbbSStefano Zampini ierr = PetscLayoutReference(A->rmap,&a->cmat->rmap);CHKERRQ(ierr); 1885616b8fbbSStefano Zampini ierr = PetscLayoutSetSize(a->cmat->cmap,cend-cbegin);CHKERRQ(ierr); 1886616b8fbbSStefano Zampini ierr = PetscLayoutSetUp(a->cmat->cmap);CHKERRQ(ierr); 1887616b8fbbSStefano Zampini } else if (cend-cbegin != a->cmat->cmap->N) { 1888616b8fbbSStefano Zampini setup = PETSC_TRUE; 1889616b8fbbSStefano Zampini ierr = PetscLayoutDestroy(&a->cmat->cmap);CHKERRQ(ierr); 1890616b8fbbSStefano Zampini ierr = PetscLayoutCreate(comm,&a->cmat->cmap);CHKERRQ(ierr); 1891616b8fbbSStefano Zampini ierr = PetscLayoutSetSize(a->cmat->cmap,cend-cbegin);CHKERRQ(ierr); 1892616b8fbbSStefano Zampini ierr = PetscLayoutSetUp(a->cmat->cmap);CHKERRQ(ierr); 18935ea7661aSPierre Jolivet } 1894616b8fbbSStefano Zampini c = (Mat_MPIDense*)a->cmat->data; 1895616b8fbbSStefano Zampini if (c->A) SETERRQ(comm,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1896616b8fbbSStefano Zampini ierr = MatDenseGetSubMatrix(a->A,cbegin,cend,&c->A);CHKERRQ(ierr); 1897616b8fbbSStefano Zampini if (setup) { /* do we really need this? */ 1898616b8fbbSStefano Zampini ierr = MatSetUpMultiply_MPIDense(a->cmat);CHKERRQ(ierr); 1899616b8fbbSStefano Zampini } 1900616b8fbbSStefano Zampini a->cmat->preallocated = PETSC_TRUE; 1901616b8fbbSStefano Zampini a->cmat->assembled = PETSC_TRUE; 19025ea7661aSPierre Jolivet a->matinuse = cbegin + 1; 19035ea7661aSPierre Jolivet *v = a->cmat; 19045ea7661aSPierre Jolivet PetscFunctionReturn(0); 19055ea7661aSPierre Jolivet } 19065ea7661aSPierre Jolivet 19075ea7661aSPierre Jolivet PetscErrorCode MatDenseRestoreSubMatrix_MPIDense(Mat A,Mat *v) 19085ea7661aSPierre Jolivet { 19095ea7661aSPierre Jolivet Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1910616b8fbbSStefano Zampini Mat_MPIDense *c; 19115ea7661aSPierre Jolivet PetscErrorCode ierr; 19125ea7661aSPierre Jolivet 19135ea7661aSPierre Jolivet PetscFunctionBegin; 1914616b8fbbSStefano Zampini if (!a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetSubMatrix() first"); 1915616b8fbbSStefano Zampini if (!a->cmat) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal matrix"); 1916616b8fbbSStefano Zampini if (*v != a->cmat) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Not the matrix obtained from MatDenseGetSubMatrix()"); 19175ea7661aSPierre Jolivet a->matinuse = 0; 1918616b8fbbSStefano Zampini c = (Mat_MPIDense*)a->cmat->data; 1919616b8fbbSStefano Zampini ierr = MatDenseRestoreSubMatrix(a->A,&c->A);CHKERRQ(ierr); 19205ea7661aSPierre Jolivet *v = NULL; 19215ea7661aSPierre Jolivet PetscFunctionReturn(0); 19225ea7661aSPierre Jolivet } 19235ea7661aSPierre Jolivet 1924002bc6daSRichard Tran Mills /*MC 1925002bc6daSRichard Tran Mills MATMPIDENSE - MATMPIDENSE = "mpidense" - A matrix type to be used for distributed dense matrices. 1926002bc6daSRichard Tran Mills 1927002bc6daSRichard Tran Mills Options Database Keys: 1928002bc6daSRichard Tran Mills . -mat_type mpidense - sets the matrix type to "mpidense" during a call to MatSetFromOptions() 1929002bc6daSRichard Tran Mills 1930002bc6daSRichard Tran Mills Level: beginner 1931002bc6daSRichard Tran Mills 1932002bc6daSRichard Tran Mills .seealso: MatCreateDense() 1933002bc6daSRichard Tran Mills 1934002bc6daSRichard Tran Mills M*/ 19358cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIDense(Mat mat) 1936273d9f13SBarry Smith { 1937273d9f13SBarry Smith Mat_MPIDense *a; 1938dfbe8321SBarry Smith PetscErrorCode ierr; 1939273d9f13SBarry Smith 1940273d9f13SBarry Smith PetscFunctionBegin; 1941b00a9115SJed Brown ierr = PetscNewLog(mat,&a);CHKERRQ(ierr); 1942b0a32e0cSBarry Smith mat->data = (void*)a; 1943273d9f13SBarry Smith ierr = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1944273d9f13SBarry Smith 1945273d9f13SBarry Smith mat->insertmode = NOT_SET_VALUES; 1946273d9f13SBarry Smith 1947273d9f13SBarry Smith /* build cache for off array entries formed */ 1948273d9f13SBarry Smith a->donotstash = PETSC_FALSE; 19492205254eSKarl Rupp 1950ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)mat),1,&mat->stash);CHKERRQ(ierr); 1951273d9f13SBarry Smith 1952273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 1953f4259b30SLisandro Dalcin a->lvec = NULL; 1954f4259b30SLisandro Dalcin a->Mvctx = NULL; 1955273d9f13SBarry Smith a->roworiented = PETSC_TRUE; 1956273d9f13SBarry Smith 195749a6ff4bSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",MatDenseGetLDA_MPIDense);CHKERRQ(ierr); 1958ad16ce7aSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseSetLDA_C",MatDenseSetLDA_MPIDense);CHKERRQ(ierr); 1959bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",MatDenseGetArray_MPIDense);CHKERRQ(ierr); 19608572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",MatDenseRestoreArray_MPIDense);CHKERRQ(ierr); 19618572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",MatDenseGetArrayRead_MPIDense);CHKERRQ(ierr); 19628572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",MatDenseRestoreArrayRead_MPIDense);CHKERRQ(ierr); 19636947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayWrite_C",MatDenseGetArrayWrite_MPIDense);CHKERRQ(ierr); 19646947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayWrite_C",MatDenseRestoreArrayWrite_MPIDense);CHKERRQ(ierr); 1965d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",MatDensePlaceArray_MPIDense);CHKERRQ(ierr); 1966d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",MatDenseResetArray_MPIDense);CHKERRQ(ierr); 1967d5ea218eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseReplaceArray_C",MatDenseReplaceArray_MPIDense);CHKERRQ(ierr); 19686947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDense);CHKERRQ(ierr); 19696947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDense);CHKERRQ(ierr); 19706947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDense);CHKERRQ(ierr); 19716947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDense);CHKERRQ(ierr); 19726947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDense);CHKERRQ(ierr); 19736947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDense);CHKERRQ(ierr); 19745ea7661aSPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetSubMatrix_C",MatDenseGetSubMatrix_MPIDense);CHKERRQ(ierr); 19755ea7661aSPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreSubMatrix_C",MatDenseRestoreSubMatrix_MPIDense);CHKERRQ(ierr); 19764e29119aSPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpiaij_mpidense_C",MatConvert_MPIAIJ_MPIDense);CHKERRQ(ierr); 19774e29119aSPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_mpiaij_C",MatConvert_MPIDense_MPIAIJ);CHKERRQ(ierr); 19788baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 19798baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",MatConvert_MPIDense_Elemental);CHKERRQ(ierr); 19808baccfbdSHong Zhang #endif 1981d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 1982d24d4204SJose E. Roman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_scalapack_C",MatConvert_Dense_ScaLAPACK);CHKERRQ(ierr); 1983d24d4204SJose E. Roman #endif 1984637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1985637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_mpidensecuda_C",MatConvert_MPIDense_MPIDenseCUDA);CHKERRQ(ierr); 1986637a0070SStefano Zampini #endif 1987bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",MatMPIDenseSetPreallocation_MPIDense);CHKERRQ(ierr); 19884222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaij_mpidense_C",MatProductSetFromOptions_MPIAIJ_MPIDense);CHKERRQ(ierr); 19894222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaij_C",MatProductSetFromOptions_MPIDense_MPIAIJ);CHKERRQ(ierr); 19906718818eSStefano Zampini #if defined(PETSC_HAVE_CUDA) 19916718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaijcusparse_mpidense_C",MatProductSetFromOptions_MPIAIJ_MPIDense);CHKERRQ(ierr); 19926718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaijcusparse_C",MatProductSetFromOptions_MPIDense_MPIAIJ);CHKERRQ(ierr); 19936718818eSStefano Zampini #endif 19948949adfdSHong Zhang 1995af53bab2SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",MatDenseGetColumn_MPIDense);CHKERRQ(ierr); 1996af53bab2SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",MatDenseRestoreColumn_MPIDense);CHKERRQ(ierr); 199738aed534SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)mat,MATMPIDENSE);CHKERRQ(ierr); 1998273d9f13SBarry Smith PetscFunctionReturn(0); 1999273d9f13SBarry Smith } 2000273d9f13SBarry Smith 2001209238afSKris Buschelman /*MC 2002637a0070SStefano Zampini MATMPIDENSECUDA - MATMPIDENSECUDA = "mpidensecuda" - A matrix type to be used for distributed dense matrices on GPUs. 2003637a0070SStefano Zampini 2004637a0070SStefano Zampini Options Database Keys: 2005637a0070SStefano Zampini . -mat_type mpidensecuda - sets the matrix type to "mpidensecuda" during a call to MatSetFromOptions() 2006637a0070SStefano Zampini 2007637a0070SStefano Zampini Level: beginner 2008637a0070SStefano Zampini 2009637a0070SStefano Zampini .seealso: 2010637a0070SStefano Zampini 2011637a0070SStefano Zampini M*/ 2012637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 2013*a4af0ceeSJacob Faibussowitsch #include <petsc/private/deviceimpl.h> 2014637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreate_MPIDenseCUDA(Mat B) 2015637a0070SStefano Zampini { 2016637a0070SStefano Zampini PetscErrorCode ierr; 2017637a0070SStefano Zampini 2018637a0070SStefano Zampini PetscFunctionBegin; 2019*a4af0ceeSJacob Faibussowitsch ierr = PetscDeviceInitialize(PETSC_DEVICE_CUDA);CHKERRQ(ierr); 2020637a0070SStefano Zampini ierr = MatCreate_MPIDense(B);CHKERRQ(ierr); 2021637a0070SStefano Zampini ierr = MatConvert_MPIDense_MPIDenseCUDA(B,MATMPIDENSECUDA,MAT_INPLACE_MATRIX,&B);CHKERRQ(ierr); 2022637a0070SStefano Zampini PetscFunctionReturn(0); 2023637a0070SStefano Zampini } 2024637a0070SStefano Zampini #endif 2025637a0070SStefano Zampini 2026637a0070SStefano Zampini /*MC 2027002d173eSKris Buschelman MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices. 2028209238afSKris Buschelman 2029209238afSKris Buschelman This matrix type is identical to MATSEQDENSE when constructed with a single process communicator, 2030209238afSKris Buschelman and MATMPIDENSE otherwise. 2031209238afSKris Buschelman 2032209238afSKris Buschelman Options Database Keys: 2033209238afSKris Buschelman . -mat_type dense - sets the matrix type to "dense" during a call to MatSetFromOptions() 2034209238afSKris Buschelman 2035209238afSKris Buschelman Level: beginner 2036209238afSKris Buschelman 20376947451fSStefano Zampini .seealso: MATSEQDENSE,MATMPIDENSE,MATDENSECUDA 20386947451fSStefano Zampini M*/ 20396947451fSStefano Zampini 20406947451fSStefano Zampini /*MC 20416947451fSStefano Zampini MATDENSECUDA - MATDENSECUDA = "densecuda" - A matrix type to be used for dense matrices on GPUs. 20426947451fSStefano Zampini 20436947451fSStefano Zampini This matrix type is identical to MATSEQDENSECUDA when constructed with a single process communicator, 20446947451fSStefano Zampini and MATMPIDENSECUDA otherwise. 20456947451fSStefano Zampini 20466947451fSStefano Zampini Options Database Keys: 20476947451fSStefano Zampini . -mat_type densecuda - sets the matrix type to "densecuda" during a call to MatSetFromOptions() 20486947451fSStefano Zampini 20496947451fSStefano Zampini Level: beginner 20506947451fSStefano Zampini 20516947451fSStefano Zampini .seealso: MATSEQDENSECUDA,MATMPIDENSECUDA,MATDENSE 2052209238afSKris Buschelman M*/ 2053209238afSKris Buschelman 2054273d9f13SBarry Smith /*@C 2055273d9f13SBarry Smith MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries 2056273d9f13SBarry Smith 20578f490ea3SStefano Zampini Collective 2058273d9f13SBarry Smith 2059273d9f13SBarry Smith Input Parameters: 20601c4f3114SJed Brown . B - the matrix 20610298fd71SBarry Smith - data - optional location of matrix data. Set data=NULL for PETSc 2062273d9f13SBarry Smith to control all matrix memory allocation. 2063273d9f13SBarry Smith 2064273d9f13SBarry Smith Notes: 2065273d9f13SBarry Smith The dense format is fully compatible with standard Fortran 77 2066273d9f13SBarry Smith storage by columns. 2067273d9f13SBarry Smith 2068273d9f13SBarry Smith The data input variable is intended primarily for Fortran programmers 2069273d9f13SBarry Smith who wish to allocate their own matrix memory space. Most users should 20700298fd71SBarry Smith set data=NULL. 2071273d9f13SBarry Smith 2072273d9f13SBarry Smith Level: intermediate 2073273d9f13SBarry Smith 2074273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 2075273d9f13SBarry Smith @*/ 20761c4f3114SJed Brown PetscErrorCode MatMPIDenseSetPreallocation(Mat B,PetscScalar *data) 2077273d9f13SBarry Smith { 20784ac538c5SBarry Smith PetscErrorCode ierr; 2079273d9f13SBarry Smith 2080273d9f13SBarry Smith PetscFunctionBegin; 2081d5ea218eSStefano Zampini PetscValidHeaderSpecific(B,MAT_CLASSID,1); 20821c4f3114SJed Brown ierr = PetscTryMethod(B,"MatMPIDenseSetPreallocation_C",(Mat,PetscScalar*),(B,data));CHKERRQ(ierr); 2083273d9f13SBarry Smith PetscFunctionReturn(0); 2084273d9f13SBarry Smith } 2085273d9f13SBarry Smith 2086d3042a70SBarry Smith /*@ 2087637a0070SStefano Zampini MatDensePlaceArray - Allows one to replace the array in a dense matrix with an 2088d3042a70SBarry Smith array provided by the user. This is useful to avoid copying an array 2089d3042a70SBarry Smith into a matrix 2090d3042a70SBarry Smith 2091d3042a70SBarry Smith Not Collective 2092d3042a70SBarry Smith 2093d3042a70SBarry Smith Input Parameters: 2094d3042a70SBarry Smith + mat - the matrix 2095d3042a70SBarry Smith - array - the array in column major order 2096d3042a70SBarry Smith 2097d3042a70SBarry Smith Notes: 2098d3042a70SBarry Smith You can return to the original array with a call to MatDenseResetArray(). The user is responsible for freeing this array; it will not be 2099d3042a70SBarry Smith freed when the matrix is destroyed. 2100d3042a70SBarry Smith 2101d3042a70SBarry Smith Level: developer 2102d3042a70SBarry Smith 2103d3042a70SBarry Smith .seealso: MatDenseGetArray(), MatDenseResetArray(), VecPlaceArray(), VecGetArray(), VecRestoreArray(), VecReplaceArray(), VecResetArray() 2104d3042a70SBarry Smith 2105d3042a70SBarry Smith @*/ 2106637a0070SStefano Zampini PetscErrorCode MatDensePlaceArray(Mat mat,const PetscScalar *array) 2107d3042a70SBarry Smith { 2108d3042a70SBarry Smith PetscErrorCode ierr; 2109637a0070SStefano Zampini 2110d3042a70SBarry Smith PetscFunctionBegin; 2111d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2112d3042a70SBarry Smith ierr = PetscUseMethod(mat,"MatDensePlaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr); 2113d3042a70SBarry Smith ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 2114637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 2115637a0070SStefano Zampini mat->offloadmask = PETSC_OFFLOAD_CPU; 2116637a0070SStefano Zampini #endif 2117d3042a70SBarry Smith PetscFunctionReturn(0); 2118d3042a70SBarry Smith } 2119d3042a70SBarry Smith 2120d3042a70SBarry Smith /*@ 2121d3042a70SBarry Smith MatDenseResetArray - Resets the matrix array to that it previously had before the call to MatDensePlaceArray() 2122d3042a70SBarry Smith 2123d3042a70SBarry Smith Not Collective 2124d3042a70SBarry Smith 2125d3042a70SBarry Smith Input Parameters: 2126d3042a70SBarry Smith . mat - the matrix 2127d3042a70SBarry Smith 2128d3042a70SBarry Smith Notes: 2129d3042a70SBarry Smith You can only call this after a call to MatDensePlaceArray() 2130d3042a70SBarry Smith 2131d3042a70SBarry Smith Level: developer 2132d3042a70SBarry Smith 2133d3042a70SBarry Smith .seealso: MatDenseGetArray(), MatDensePlaceArray(), VecPlaceArray(), VecGetArray(), VecRestoreArray(), VecReplaceArray(), VecResetArray() 2134d3042a70SBarry Smith 2135d3042a70SBarry Smith @*/ 2136d3042a70SBarry Smith PetscErrorCode MatDenseResetArray(Mat mat) 2137d3042a70SBarry Smith { 2138d3042a70SBarry Smith PetscErrorCode ierr; 2139637a0070SStefano Zampini 2140d3042a70SBarry Smith PetscFunctionBegin; 2141d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2142d3042a70SBarry Smith ierr = PetscUseMethod(mat,"MatDenseResetArray_C",(Mat),(mat));CHKERRQ(ierr); 2143d3042a70SBarry Smith ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 2144d3042a70SBarry Smith PetscFunctionReturn(0); 2145d3042a70SBarry Smith } 2146d3042a70SBarry Smith 2147d5ea218eSStefano Zampini /*@ 2148d5ea218eSStefano Zampini MatDenseReplaceArray - Allows one to replace the array in a dense matrix with an 2149d5ea218eSStefano Zampini array provided by the user. This is useful to avoid copying an array 2150d5ea218eSStefano Zampini into a matrix 2151d5ea218eSStefano Zampini 2152d5ea218eSStefano Zampini Not Collective 2153d5ea218eSStefano Zampini 2154d5ea218eSStefano Zampini Input Parameters: 2155d5ea218eSStefano Zampini + mat - the matrix 2156d5ea218eSStefano Zampini - array - the array in column major order 2157d5ea218eSStefano Zampini 2158d5ea218eSStefano Zampini Notes: 2159d5ea218eSStefano Zampini The memory passed in MUST be obtained with PetscMalloc() and CANNOT be 2160d5ea218eSStefano Zampini freed by the user. It will be freed when the matrix is destroyed. 2161d5ea218eSStefano Zampini 2162d5ea218eSStefano Zampini Level: developer 2163d5ea218eSStefano Zampini 2164d5ea218eSStefano Zampini .seealso: MatDenseGetArray(), VecReplaceArray() 2165d5ea218eSStefano Zampini @*/ 2166d5ea218eSStefano Zampini PetscErrorCode MatDenseReplaceArray(Mat mat,const PetscScalar *array) 2167d5ea218eSStefano Zampini { 2168d5ea218eSStefano Zampini PetscErrorCode ierr; 2169d5ea218eSStefano Zampini 2170d5ea218eSStefano Zampini PetscFunctionBegin; 2171d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2172d5ea218eSStefano Zampini ierr = PetscUseMethod(mat,"MatDenseReplaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr); 2173d5ea218eSStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 2174d5ea218eSStefano Zampini #if defined(PETSC_HAVE_CUDA) 2175d5ea218eSStefano Zampini mat->offloadmask = PETSC_OFFLOAD_CPU; 2176d5ea218eSStefano Zampini #endif 2177d5ea218eSStefano Zampini PetscFunctionReturn(0); 2178d5ea218eSStefano Zampini } 2179d5ea218eSStefano Zampini 2180637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 21818965ea79SLois Curfman McInnes /*@C 2182637a0070SStefano Zampini MatDenseCUDAPlaceArray - Allows one to replace the GPU array in a dense matrix with an 2183637a0070SStefano Zampini array provided by the user. This is useful to avoid copying an array 2184637a0070SStefano Zampini into a matrix 2185637a0070SStefano Zampini 2186637a0070SStefano Zampini Not Collective 2187637a0070SStefano Zampini 2188637a0070SStefano Zampini Input Parameters: 2189637a0070SStefano Zampini + mat - the matrix 2190637a0070SStefano Zampini - array - the array in column major order 2191637a0070SStefano Zampini 2192637a0070SStefano Zampini Notes: 2193637a0070SStefano Zampini You can return to the original array with a call to MatDenseCUDAResetArray(). The user is responsible for freeing this array; it will not be 2194637a0070SStefano Zampini freed when the matrix is destroyed. The array must have been allocated with cudaMalloc(). 2195637a0070SStefano Zampini 2196637a0070SStefano Zampini Level: developer 2197637a0070SStefano Zampini 2198637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDAResetArray() 2199637a0070SStefano Zampini @*/ 2200637a0070SStefano Zampini PetscErrorCode MatDenseCUDAPlaceArray(Mat mat,const PetscScalar *array) 2201637a0070SStefano Zampini { 2202637a0070SStefano Zampini PetscErrorCode ierr; 2203637a0070SStefano Zampini 2204637a0070SStefano Zampini PetscFunctionBegin; 2205d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2206637a0070SStefano Zampini ierr = PetscUseMethod(mat,"MatDenseCUDAPlaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr); 2207637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 2208637a0070SStefano Zampini mat->offloadmask = PETSC_OFFLOAD_GPU; 2209637a0070SStefano Zampini PetscFunctionReturn(0); 2210637a0070SStefano Zampini } 2211637a0070SStefano Zampini 2212637a0070SStefano Zampini /*@C 2213637a0070SStefano Zampini MatDenseCUDAResetArray - Resets the matrix array to that it previously had before the call to MatDenseCUDAPlaceArray() 2214637a0070SStefano Zampini 2215637a0070SStefano Zampini Not Collective 2216637a0070SStefano Zampini 2217637a0070SStefano Zampini Input Parameters: 2218637a0070SStefano Zampini . mat - the matrix 2219637a0070SStefano Zampini 2220637a0070SStefano Zampini Notes: 2221637a0070SStefano Zampini You can only call this after a call to MatDenseCUDAPlaceArray() 2222637a0070SStefano Zampini 2223637a0070SStefano Zampini Level: developer 2224637a0070SStefano Zampini 2225637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDAPlaceArray() 2226637a0070SStefano Zampini 2227637a0070SStefano Zampini @*/ 2228637a0070SStefano Zampini PetscErrorCode MatDenseCUDAResetArray(Mat mat) 2229637a0070SStefano Zampini { 2230637a0070SStefano Zampini PetscErrorCode ierr; 2231637a0070SStefano Zampini 2232637a0070SStefano Zampini PetscFunctionBegin; 2233d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2234637a0070SStefano Zampini ierr = PetscUseMethod(mat,"MatDenseCUDAResetArray_C",(Mat),(mat));CHKERRQ(ierr); 2235637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 2236637a0070SStefano Zampini PetscFunctionReturn(0); 2237637a0070SStefano Zampini } 2238637a0070SStefano Zampini 2239637a0070SStefano Zampini /*@C 2240d5ea218eSStefano Zampini MatDenseCUDAReplaceArray - Allows one to replace the GPU array in a dense matrix with an 2241d5ea218eSStefano Zampini array provided by the user. This is useful to avoid copying an array 2242d5ea218eSStefano Zampini into a matrix 2243d5ea218eSStefano Zampini 2244d5ea218eSStefano Zampini Not Collective 2245d5ea218eSStefano Zampini 2246d5ea218eSStefano Zampini Input Parameters: 2247d5ea218eSStefano Zampini + mat - the matrix 2248d5ea218eSStefano Zampini - array - the array in column major order 2249d5ea218eSStefano Zampini 2250d5ea218eSStefano Zampini Notes: 2251d5ea218eSStefano Zampini This permanently replaces the GPU array and frees the memory associated with the old GPU array. 2252d5ea218eSStefano Zampini The memory passed in CANNOT be freed by the user. It will be freed 2253d5ea218eSStefano Zampini when the matrix is destroyed. The array should respect the matrix leading dimension. 2254d5ea218eSStefano Zampini 2255d5ea218eSStefano Zampini Level: developer 2256d5ea218eSStefano Zampini 2257d5ea218eSStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDAPlaceArray(), MatDenseCUDAResetArray() 2258d5ea218eSStefano Zampini @*/ 2259d5ea218eSStefano Zampini PetscErrorCode MatDenseCUDAReplaceArray(Mat mat,const PetscScalar *array) 2260d5ea218eSStefano Zampini { 2261d5ea218eSStefano Zampini PetscErrorCode ierr; 2262d5ea218eSStefano Zampini 2263d5ea218eSStefano Zampini PetscFunctionBegin; 2264d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2265d5ea218eSStefano Zampini ierr = PetscUseMethod(mat,"MatDenseCUDAReplaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr); 2266d5ea218eSStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 2267d5ea218eSStefano Zampini mat->offloadmask = PETSC_OFFLOAD_GPU; 2268d5ea218eSStefano Zampini PetscFunctionReturn(0); 2269d5ea218eSStefano Zampini } 2270d5ea218eSStefano Zampini 2271d5ea218eSStefano Zampini /*@C 2272637a0070SStefano Zampini MatDenseCUDAGetArrayWrite - Provides write access to the CUDA buffer inside a dense matrix. 2273637a0070SStefano Zampini 2274637a0070SStefano Zampini Not Collective 2275637a0070SStefano Zampini 2276637a0070SStefano Zampini Input Parameters: 2277637a0070SStefano Zampini . A - the matrix 2278637a0070SStefano Zampini 2279637a0070SStefano Zampini Output Parameters 2280637a0070SStefano Zampini . array - the GPU array in column major order 2281637a0070SStefano Zampini 2282637a0070SStefano Zampini Notes: 2283637a0070SStefano Zampini The data on the GPU may not be updated due to operations done on the CPU. If you need updated data, use MatDenseCUDAGetArray(). The array must be restored with MatDenseCUDARestoreArrayWrite() when no longer needed. 2284637a0070SStefano Zampini 2285637a0070SStefano Zampini Level: developer 2286637a0070SStefano Zampini 2287637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayRead(), MatDenseCUDARestoreArrayRead() 2288637a0070SStefano Zampini @*/ 2289637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArrayWrite(Mat A, PetscScalar **a) 2290637a0070SStefano Zampini { 2291637a0070SStefano Zampini PetscErrorCode ierr; 2292637a0070SStefano Zampini 2293637a0070SStefano Zampini PetscFunctionBegin; 2294d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2295637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDAGetArrayWrite_C",(Mat,PetscScalar**),(A,a));CHKERRQ(ierr); 2296637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr); 2297637a0070SStefano Zampini PetscFunctionReturn(0); 2298637a0070SStefano Zampini } 2299637a0070SStefano Zampini 2300637a0070SStefano Zampini /*@C 2301637a0070SStefano Zampini MatDenseCUDARestoreArrayWrite - Restore write access to the CUDA buffer inside a dense matrix previously obtained with MatDenseCUDAGetArrayWrite(). 2302637a0070SStefano Zampini 2303637a0070SStefano Zampini Not Collective 2304637a0070SStefano Zampini 2305637a0070SStefano Zampini Input Parameters: 2306637a0070SStefano Zampini + A - the matrix 2307637a0070SStefano Zampini - array - the GPU array in column major order 2308637a0070SStefano Zampini 2309637a0070SStefano Zampini Notes: 2310637a0070SStefano Zampini 2311637a0070SStefano Zampini Level: developer 2312637a0070SStefano Zampini 2313637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead(), MatDenseCUDAGetArrayRead() 2314637a0070SStefano Zampini @*/ 2315637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArrayWrite(Mat A, PetscScalar **a) 2316637a0070SStefano Zampini { 2317637a0070SStefano Zampini PetscErrorCode ierr; 2318637a0070SStefano Zampini 2319637a0070SStefano Zampini PetscFunctionBegin; 2320d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2321637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDARestoreArrayWrite_C",(Mat,PetscScalar**),(A,a));CHKERRQ(ierr); 2322637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr); 2323637a0070SStefano Zampini A->offloadmask = PETSC_OFFLOAD_GPU; 2324637a0070SStefano Zampini PetscFunctionReturn(0); 2325637a0070SStefano Zampini } 2326637a0070SStefano Zampini 2327637a0070SStefano Zampini /*@C 2328637a0070SStefano Zampini MatDenseCUDAGetArrayRead - Provides read-only access to the CUDA buffer inside a dense matrix. The array must be restored with MatDenseCUDARestoreArrayRead() when no longer needed. 2329637a0070SStefano Zampini 2330637a0070SStefano Zampini Not Collective 2331637a0070SStefano Zampini 2332637a0070SStefano Zampini Input Parameters: 2333637a0070SStefano Zampini . A - the matrix 2334637a0070SStefano Zampini 2335637a0070SStefano Zampini Output Parameters 2336637a0070SStefano Zampini . array - the GPU array in column major order 2337637a0070SStefano Zampini 2338637a0070SStefano Zampini Notes: 2339637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). 2340637a0070SStefano Zampini 2341637a0070SStefano Zampini Level: developer 2342637a0070SStefano Zampini 2343637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead() 2344637a0070SStefano Zampini @*/ 2345637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArrayRead(Mat A, const PetscScalar **a) 2346637a0070SStefano Zampini { 2347637a0070SStefano Zampini PetscErrorCode ierr; 2348637a0070SStefano Zampini 2349637a0070SStefano Zampini PetscFunctionBegin; 2350d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2351637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDAGetArrayRead_C",(Mat,const PetscScalar**),(A,a));CHKERRQ(ierr); 2352637a0070SStefano Zampini PetscFunctionReturn(0); 2353637a0070SStefano Zampini } 2354637a0070SStefano Zampini 2355637a0070SStefano Zampini /*@C 2356637a0070SStefano Zampini MatDenseCUDARestoreArrayRead - Restore read-only access to the CUDA buffer inside a dense matrix previously obtained with a call to MatDenseCUDAGetArrayRead(). 2357637a0070SStefano Zampini 2358637a0070SStefano Zampini Not Collective 2359637a0070SStefano Zampini 2360637a0070SStefano Zampini Input Parameters: 2361637a0070SStefano Zampini + A - the matrix 2362637a0070SStefano Zampini - array - the GPU array in column major order 2363637a0070SStefano Zampini 2364637a0070SStefano Zampini Notes: 2365637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). 2366637a0070SStefano Zampini 2367637a0070SStefano Zampini Level: developer 2368637a0070SStefano Zampini 2369637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDAGetArrayRead() 2370637a0070SStefano Zampini @*/ 2371637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArrayRead(Mat A, const PetscScalar **a) 2372637a0070SStefano Zampini { 2373637a0070SStefano Zampini PetscErrorCode ierr; 2374637a0070SStefano Zampini 2375637a0070SStefano Zampini PetscFunctionBegin; 2376637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDARestoreArrayRead_C",(Mat,const PetscScalar**),(A,a));CHKERRQ(ierr); 2377637a0070SStefano Zampini PetscFunctionReturn(0); 2378637a0070SStefano Zampini } 2379637a0070SStefano Zampini 2380637a0070SStefano Zampini /*@C 2381637a0070SStefano Zampini MatDenseCUDAGetArray - Provides access to the CUDA buffer inside a dense matrix. The array must be restored with MatDenseCUDARestoreArray() when no longer needed. 2382637a0070SStefano Zampini 2383637a0070SStefano Zampini Not Collective 2384637a0070SStefano Zampini 2385637a0070SStefano Zampini Input Parameters: 2386637a0070SStefano Zampini . A - the matrix 2387637a0070SStefano Zampini 2388637a0070SStefano Zampini Output Parameters 2389637a0070SStefano Zampini . array - the GPU array in column major order 2390637a0070SStefano Zampini 2391637a0070SStefano Zampini Notes: 2392637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). For read-only access, use MatDenseCUDAGetArrayRead(). 2393637a0070SStefano Zampini 2394637a0070SStefano Zampini Level: developer 2395637a0070SStefano Zampini 2396637a0070SStefano Zampini .seealso: MatDenseCUDAGetArrayRead(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead() 2397637a0070SStefano Zampini @*/ 2398637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArray(Mat A, PetscScalar **a) 2399637a0070SStefano Zampini { 2400637a0070SStefano Zampini PetscErrorCode ierr; 2401637a0070SStefano Zampini 2402637a0070SStefano Zampini PetscFunctionBegin; 2403d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2404637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDAGetArray_C",(Mat,PetscScalar**),(A,a));CHKERRQ(ierr); 2405637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr); 2406637a0070SStefano Zampini PetscFunctionReturn(0); 2407637a0070SStefano Zampini } 2408637a0070SStefano Zampini 2409637a0070SStefano Zampini /*@C 2410637a0070SStefano Zampini MatDenseCUDARestoreArray - Restore access to the CUDA buffer inside a dense matrix previously obtained with MatDenseCUDAGetArray(). 2411637a0070SStefano Zampini 2412637a0070SStefano Zampini Not Collective 2413637a0070SStefano Zampini 2414637a0070SStefano Zampini Input Parameters: 2415637a0070SStefano Zampini + A - the matrix 2416637a0070SStefano Zampini - array - the GPU array in column major order 2417637a0070SStefano Zampini 2418637a0070SStefano Zampini Notes: 2419637a0070SStefano Zampini 2420637a0070SStefano Zampini Level: developer 2421637a0070SStefano Zampini 2422637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead(), MatDenseCUDAGetArrayRead() 2423637a0070SStefano Zampini @*/ 2424637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArray(Mat A, PetscScalar **a) 2425637a0070SStefano Zampini { 2426637a0070SStefano Zampini PetscErrorCode ierr; 2427637a0070SStefano Zampini 2428637a0070SStefano Zampini PetscFunctionBegin; 2429d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2430637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDARestoreArray_C",(Mat,PetscScalar**),(A,a));CHKERRQ(ierr); 2431637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr); 2432637a0070SStefano Zampini A->offloadmask = PETSC_OFFLOAD_GPU; 2433637a0070SStefano Zampini PetscFunctionReturn(0); 2434637a0070SStefano Zampini } 2435637a0070SStefano Zampini #endif 2436637a0070SStefano Zampini 2437637a0070SStefano Zampini /*@C 2438637a0070SStefano Zampini MatCreateDense - Creates a matrix in dense format. 24398965ea79SLois Curfman McInnes 2440d083f849SBarry Smith Collective 2441db81eaa0SLois Curfman McInnes 24428965ea79SLois Curfman McInnes Input Parameters: 2443db81eaa0SLois Curfman McInnes + comm - MPI communicator 24448965ea79SLois Curfman McInnes . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2445db81eaa0SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 24468965ea79SLois Curfman McInnes . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 2447db81eaa0SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 24486cfe35ddSJose E. Roman - data - optional location of matrix data. Set data=NULL (PETSC_NULL_SCALAR for Fortran users) for PETSc 2449dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 24508965ea79SLois Curfman McInnes 24518965ea79SLois Curfman McInnes Output Parameter: 2452477f1c0bSLois Curfman McInnes . A - the matrix 24538965ea79SLois Curfman McInnes 2454b259b22eSLois Curfman McInnes Notes: 245539ddd567SLois Curfman McInnes The dense format is fully compatible with standard Fortran 77 245639ddd567SLois Curfman McInnes storage by columns. 2457002bc6daSRichard Tran Mills Note that, although local portions of the matrix are stored in column-major 2458002bc6daSRichard Tran Mills order, the matrix is partitioned across MPI ranks by row. 24598965ea79SLois Curfman McInnes 246018f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 246118f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 24626cfe35ddSJose E. Roman set data=NULL (PETSC_NULL_SCALAR for Fortran users). 246318f449edSLois Curfman McInnes 24648965ea79SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 24658965ea79SLois Curfman McInnes (possibly both). 24668965ea79SLois Curfman McInnes 2467027ccd11SLois Curfman McInnes Level: intermediate 2468027ccd11SLois Curfman McInnes 246939ddd567SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 24708965ea79SLois Curfman McInnes @*/ 247169b1f4b7SBarry Smith PetscErrorCode MatCreateDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 24728965ea79SLois Curfman McInnes { 24736849ba73SBarry Smith PetscErrorCode ierr; 247413f74950SBarry Smith PetscMPIInt size; 24758965ea79SLois Curfman McInnes 24763a40ed3dSBarry Smith PetscFunctionBegin; 2477f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2478f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2479ffc4695bSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr); 2480273d9f13SBarry Smith if (size > 1) { 24818f490ea3SStefano Zampini PetscBool havedata = (PetscBool)!!data; 24828f490ea3SStefano Zampini 2483273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIDENSE);CHKERRQ(ierr); 2484273d9f13SBarry Smith ierr = MatMPIDenseSetPreallocation(*A,data);CHKERRQ(ierr); 2485820f2d46SBarry Smith ierr = MPIU_Allreduce(MPI_IN_PLACE,&havedata,1,MPIU_BOOL,MPI_LOR,comm);CHKERRMPI(ierr); 24868f490ea3SStefano Zampini if (havedata) { /* user provided data array, so no need to assemble */ 24876cfe35ddSJose E. Roman ierr = MatSetUpMultiply_MPIDense(*A);CHKERRQ(ierr); 24886cfe35ddSJose E. Roman (*A)->assembled = PETSC_TRUE; 24896cfe35ddSJose E. Roman } 2490273d9f13SBarry Smith } else { 2491273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr); 2492273d9f13SBarry Smith ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr); 24938c469469SLois Curfman McInnes } 24943a40ed3dSBarry Smith PetscFunctionReturn(0); 24958965ea79SLois Curfman McInnes } 24968965ea79SLois Curfman McInnes 2497637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 2498637a0070SStefano Zampini /*@C 2499637a0070SStefano Zampini MatCreateDenseCUDA - Creates a matrix in dense format using CUDA. 2500637a0070SStefano Zampini 2501637a0070SStefano Zampini Collective 2502637a0070SStefano Zampini 2503637a0070SStefano Zampini Input Parameters: 2504637a0070SStefano Zampini + comm - MPI communicator 2505637a0070SStefano Zampini . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2506637a0070SStefano Zampini . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 2507637a0070SStefano Zampini . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 2508637a0070SStefano Zampini . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 2509637a0070SStefano Zampini - data - optional location of GPU matrix data. Set data=NULL for PETSc 2510637a0070SStefano Zampini to control matrix memory allocation. 2511637a0070SStefano Zampini 2512637a0070SStefano Zampini Output Parameter: 2513637a0070SStefano Zampini . A - the matrix 2514637a0070SStefano Zampini 2515637a0070SStefano Zampini Notes: 2516637a0070SStefano Zampini 2517637a0070SStefano Zampini Level: intermediate 2518637a0070SStefano Zampini 2519637a0070SStefano Zampini .seealso: MatCreate(), MatCreateDense() 2520637a0070SStefano Zampini @*/ 2521637a0070SStefano Zampini PetscErrorCode MatCreateDenseCUDA(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 2522637a0070SStefano Zampini { 2523637a0070SStefano Zampini PetscErrorCode ierr; 2524637a0070SStefano Zampini PetscMPIInt size; 2525637a0070SStefano Zampini 2526637a0070SStefano Zampini PetscFunctionBegin; 2527637a0070SStefano Zampini ierr = MatCreate(comm,A);CHKERRQ(ierr); 2528637a0070SStefano Zampini PetscValidLogicalCollectiveBool(*A,!!data,6); 2529637a0070SStefano Zampini ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2530ffc4695bSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr); 2531637a0070SStefano Zampini if (size > 1) { 2532637a0070SStefano Zampini ierr = MatSetType(*A,MATMPIDENSECUDA);CHKERRQ(ierr); 2533637a0070SStefano Zampini ierr = MatMPIDenseCUDASetPreallocation(*A,data);CHKERRQ(ierr); 2534637a0070SStefano Zampini if (data) { /* user provided data array, so no need to assemble */ 2535637a0070SStefano Zampini ierr = MatSetUpMultiply_MPIDense(*A);CHKERRQ(ierr); 2536637a0070SStefano Zampini (*A)->assembled = PETSC_TRUE; 2537637a0070SStefano Zampini } 2538637a0070SStefano Zampini } else { 2539637a0070SStefano Zampini ierr = MatSetType(*A,MATSEQDENSECUDA);CHKERRQ(ierr); 2540637a0070SStefano Zampini ierr = MatSeqDenseCUDASetPreallocation(*A,data);CHKERRQ(ierr); 2541637a0070SStefano Zampini } 2542637a0070SStefano Zampini PetscFunctionReturn(0); 2543637a0070SStefano Zampini } 2544637a0070SStefano Zampini #endif 2545637a0070SStefano Zampini 25466849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat) 25478965ea79SLois Curfman McInnes { 25488965ea79SLois Curfman McInnes Mat mat; 25493501a2bdSLois Curfman McInnes Mat_MPIDense *a,*oldmat = (Mat_MPIDense*)A->data; 2550dfbe8321SBarry Smith PetscErrorCode ierr; 25518965ea79SLois Curfman McInnes 25523a40ed3dSBarry Smith PetscFunctionBegin; 2553f4259b30SLisandro Dalcin *newmat = NULL; 2554ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&mat);CHKERRQ(ierr); 2555d0f46423SBarry Smith ierr = MatSetSizes(mat,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 25567adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)A)->type_name);CHKERRQ(ierr); 2557834f8fabSBarry Smith a = (Mat_MPIDense*)mat->data; 25585aa7edbeSHong Zhang 2559d5f3da31SBarry Smith mat->factortype = A->factortype; 2560c456f294SBarry Smith mat->assembled = PETSC_TRUE; 2561273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 25628965ea79SLois Curfman McInnes 2563e0fa3b82SLois Curfman McInnes mat->insertmode = NOT_SET_VALUES; 25643782ba37SSatish Balay a->donotstash = oldmat->donotstash; 2565e04c1aa4SHong Zhang 25661e1e43feSBarry Smith ierr = PetscLayoutReference(A->rmap,&mat->rmap);CHKERRQ(ierr); 25671e1e43feSBarry Smith ierr = PetscLayoutReference(A->cmap,&mat->cmap);CHKERRQ(ierr); 25688965ea79SLois Curfman McInnes 25695609ef8eSBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 25703bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 2571637a0070SStefano Zampini ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 257201b82886SBarry Smith 25738965ea79SLois Curfman McInnes *newmat = mat; 25743a40ed3dSBarry Smith PetscFunctionReturn(0); 25758965ea79SLois Curfman McInnes } 25768965ea79SLois Curfman McInnes 2577eb91f321SVaclav Hapla PetscErrorCode MatLoad_MPIDense(Mat newMat, PetscViewer viewer) 2578eb91f321SVaclav Hapla { 2579eb91f321SVaclav Hapla PetscErrorCode ierr; 258087d5ce66SSatish Balay PetscBool isbinary; 258187d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 258287d5ce66SSatish Balay PetscBool ishdf5; 258387d5ce66SSatish Balay #endif 2584eb91f321SVaclav Hapla 2585eb91f321SVaclav Hapla PetscFunctionBegin; 2586eb91f321SVaclav Hapla PetscValidHeaderSpecific(newMat,MAT_CLASSID,1); 2587eb91f321SVaclav Hapla PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2); 2588eb91f321SVaclav Hapla /* force binary viewer to load .info file if it has not yet done so */ 2589eb91f321SVaclav Hapla ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr); 2590eb91f321SVaclav Hapla ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 259187d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 2592eb91f321SVaclav Hapla ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERHDF5, &ishdf5);CHKERRQ(ierr); 259387d5ce66SSatish Balay #endif 2594eb91f321SVaclav Hapla if (isbinary) { 25958491ab44SLisandro Dalcin ierr = MatLoad_Dense_Binary(newMat,viewer);CHKERRQ(ierr); 2596eb91f321SVaclav Hapla #if defined(PETSC_HAVE_HDF5) 259787d5ce66SSatish Balay } else if (ishdf5) { 2598eb91f321SVaclav Hapla ierr = MatLoad_Dense_HDF5(newMat,viewer);CHKERRQ(ierr); 2599eb91f321SVaclav Hapla #endif 260087d5ce66SSatish Balay } else SETERRQ2(PetscObjectComm((PetscObject)newMat),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)newMat)->type_name); 2601eb91f321SVaclav Hapla PetscFunctionReturn(0); 2602eb91f321SVaclav Hapla } 2603eb91f321SVaclav Hapla 26046718818eSStefano Zampini static PetscErrorCode MatEqual_MPIDense(Mat A,Mat B,PetscBool *flag) 26056e4ee0c6SHong Zhang { 26066e4ee0c6SHong Zhang Mat_MPIDense *matB = (Mat_MPIDense*)B->data,*matA = (Mat_MPIDense*)A->data; 26076e4ee0c6SHong Zhang Mat a,b; 2608ace3abfcSBarry Smith PetscBool flg; 26096e4ee0c6SHong Zhang PetscErrorCode ierr; 261090ace30eSBarry Smith 26116e4ee0c6SHong Zhang PetscFunctionBegin; 26126e4ee0c6SHong Zhang a = matA->A; 26136e4ee0c6SHong Zhang b = matB->A; 26146e4ee0c6SHong Zhang ierr = MatEqual(a,b,&flg);CHKERRQ(ierr); 2615820f2d46SBarry Smith ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRMPI(ierr); 26166e4ee0c6SHong Zhang PetscFunctionReturn(0); 26176e4ee0c6SHong Zhang } 261890ace30eSBarry Smith 26196718818eSStefano Zampini PetscErrorCode MatDestroy_MatTransMatMult_MPIDense_MPIDense(void *data) 2620baa3c1c6SHong Zhang { 2621baa3c1c6SHong Zhang PetscErrorCode ierr; 26226718818eSStefano Zampini Mat_TransMatMultDense *atb = (Mat_TransMatMultDense *)data; 2623baa3c1c6SHong Zhang 2624baa3c1c6SHong Zhang PetscFunctionBegin; 2625637a0070SStefano Zampini ierr = PetscFree2(atb->sendbuf,atb->recvcounts);CHKERRQ(ierr); 2626637a0070SStefano Zampini ierr = MatDestroy(&atb->atb);CHKERRQ(ierr); 2627baa3c1c6SHong Zhang ierr = PetscFree(atb);CHKERRQ(ierr); 2628baa3c1c6SHong Zhang PetscFunctionReturn(0); 2629baa3c1c6SHong Zhang } 2630baa3c1c6SHong Zhang 26316718818eSStefano Zampini PetscErrorCode MatDestroy_MatMatTransMult_MPIDense_MPIDense(void *data) 2632cc48ffa7SToby Isaac { 2633cc48ffa7SToby Isaac PetscErrorCode ierr; 26346718818eSStefano Zampini Mat_MatTransMultDense *abt = (Mat_MatTransMultDense *)data; 2635cc48ffa7SToby Isaac 2636cc48ffa7SToby Isaac PetscFunctionBegin; 2637cc48ffa7SToby Isaac ierr = PetscFree2(abt->buf[0],abt->buf[1]);CHKERRQ(ierr); 2638faa55883SToby Isaac ierr = PetscFree2(abt->recvcounts,abt->recvdispls);CHKERRQ(ierr); 2639cc48ffa7SToby Isaac ierr = PetscFree(abt);CHKERRQ(ierr); 2640cc48ffa7SToby Isaac PetscFunctionReturn(0); 2641cc48ffa7SToby Isaac } 2642cc48ffa7SToby Isaac 26436718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 2644cb20be35SHong Zhang { 2645baa3c1c6SHong Zhang Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 26466718818eSStefano Zampini Mat_TransMatMultDense *atb; 2647cb20be35SHong Zhang PetscErrorCode ierr; 2648cb20be35SHong Zhang MPI_Comm comm; 26496718818eSStefano Zampini PetscMPIInt size,*recvcounts; 26506718818eSStefano Zampini PetscScalar *carray,*sendbuf; 2651637a0070SStefano Zampini const PetscScalar *atbarray; 2652d5017740SHong Zhang PetscInt i,cN=C->cmap->N,cM=C->rmap->N,proc,k,j; 2653e68c0b26SHong Zhang const PetscInt *ranges; 2654cb20be35SHong Zhang 2655cb20be35SHong Zhang PetscFunctionBegin; 26566718818eSStefano Zampini MatCheckProduct(C,3); 26576718818eSStefano Zampini if (!C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 26586718818eSStefano Zampini atb = (Mat_TransMatMultDense *)C->product->data; 26596718818eSStefano Zampini recvcounts = atb->recvcounts; 26606718818eSStefano Zampini sendbuf = atb->sendbuf; 26616718818eSStefano Zampini 2662cb20be35SHong Zhang ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 2663ffc4695bSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr); 2664e68c0b26SHong Zhang 2665c5ef1628SHong Zhang /* compute atbarray = aseq^T * bseq */ 2666637a0070SStefano Zampini ierr = MatTransposeMatMult(a->A,b->A,atb->atb ? MAT_REUSE_MATRIX : MAT_INITIAL_MATRIX,PETSC_DEFAULT,&atb->atb);CHKERRQ(ierr); 2667cb20be35SHong Zhang 2668cb20be35SHong Zhang ierr = MatGetOwnershipRanges(C,&ranges);CHKERRQ(ierr); 2669cb20be35SHong Zhang 2670660d5466SHong Zhang /* arrange atbarray into sendbuf */ 2671637a0070SStefano Zampini ierr = MatDenseGetArrayRead(atb->atb,&atbarray);CHKERRQ(ierr); 2672637a0070SStefano Zampini for (proc=0, k=0; proc<size; proc++) { 2673baa3c1c6SHong Zhang for (j=0; j<cN; j++) { 2674c5ef1628SHong Zhang for (i=ranges[proc]; i<ranges[proc+1]; i++) sendbuf[k++] = atbarray[i+j*cM]; 2675cb20be35SHong Zhang } 2676cb20be35SHong Zhang } 2677637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(atb->atb,&atbarray);CHKERRQ(ierr); 2678637a0070SStefano Zampini 2679c5ef1628SHong Zhang /* sum all atbarray to local values of C */ 26800acaeb71SStefano Zampini ierr = MatDenseGetArrayWrite(c->A,&carray);CHKERRQ(ierr); 2681ffc4695bSBarry Smith ierr = MPI_Reduce_scatter(sendbuf,carray,recvcounts,MPIU_SCALAR,MPIU_SUM,comm);CHKERRMPI(ierr); 26820acaeb71SStefano Zampini ierr = MatDenseRestoreArrayWrite(c->A,&carray);CHKERRQ(ierr); 26830acaeb71SStefano Zampini ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 26840acaeb71SStefano Zampini ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2685cb20be35SHong Zhang PetscFunctionReturn(0); 2686cb20be35SHong Zhang } 2687cb20be35SHong Zhang 26886718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat C) 2689cb20be35SHong Zhang { 2690cb20be35SHong Zhang PetscErrorCode ierr; 2691cb20be35SHong Zhang MPI_Comm comm; 2692baa3c1c6SHong Zhang PetscMPIInt size; 2693660d5466SHong Zhang PetscInt cm=A->cmap->n,cM,cN=B->cmap->N; 2694baa3c1c6SHong Zhang Mat_TransMatMultDense *atb; 26956718818eSStefano Zampini PetscBool cisdense; 26960acaeb71SStefano Zampini PetscInt i; 26970acaeb71SStefano Zampini const PetscInt *ranges; 2698cb20be35SHong Zhang 2699cb20be35SHong Zhang PetscFunctionBegin; 27006718818eSStefano Zampini MatCheckProduct(C,3); 27016718818eSStefano Zampini if (C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty"); 2702baa3c1c6SHong Zhang ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 2703cb20be35SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) { 2704cb20be35SHong Zhang SETERRQ4(comm,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != B (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 2705cb20be35SHong Zhang } 2706cb20be35SHong Zhang 27074222ddf1SHong Zhang /* create matrix product C */ 27086718818eSStefano Zampini ierr = MatSetSizes(C,cm,B->cmap->n,A->cmap->N,B->cmap->N);CHKERRQ(ierr); 27096718818eSStefano Zampini ierr = PetscObjectTypeCompareAny((PetscObject)C,&cisdense,MATMPIDENSE,MATMPIDENSECUDA,"");CHKERRQ(ierr); 27106718818eSStefano Zampini if (!cisdense) { 27116718818eSStefano Zampini ierr = MatSetType(C,((PetscObject)A)->type_name);CHKERRQ(ierr); 27126718818eSStefano Zampini } 271318992e5dSStefano Zampini ierr = MatSetUp(C);CHKERRQ(ierr); 2714baa3c1c6SHong Zhang 27154222ddf1SHong Zhang /* create data structure for reuse C */ 2716ffc4695bSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr); 2717baa3c1c6SHong Zhang ierr = PetscNew(&atb);CHKERRQ(ierr); 27184222ddf1SHong Zhang cM = C->rmap->N; 27196718818eSStefano Zampini ierr = PetscMalloc2((size_t)cM*(size_t)cN,&atb->sendbuf,size,&atb->recvcounts);CHKERRQ(ierr); 27200acaeb71SStefano Zampini ierr = MatGetOwnershipRanges(C,&ranges);CHKERRQ(ierr); 27210acaeb71SStefano Zampini for (i=0; i<size; i++) atb->recvcounts[i] = (ranges[i+1] - ranges[i])*cN; 2722baa3c1c6SHong Zhang 27236718818eSStefano Zampini C->product->data = atb; 27246718818eSStefano Zampini C->product->destroy = MatDestroy_MatTransMatMult_MPIDense_MPIDense; 2725cb20be35SHong Zhang PetscFunctionReturn(0); 2726cb20be35SHong Zhang } 2727cb20be35SHong Zhang 27284222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat A, Mat B, PetscReal fill, Mat C) 2729cb20be35SHong Zhang { 2730cb20be35SHong Zhang PetscErrorCode ierr; 2731cc48ffa7SToby Isaac MPI_Comm comm; 2732cc48ffa7SToby Isaac PetscMPIInt i, size; 2733cc48ffa7SToby Isaac PetscInt maxRows, bufsiz; 2734cc48ffa7SToby Isaac PetscMPIInt tag; 27354222ddf1SHong Zhang PetscInt alg; 2736cc48ffa7SToby Isaac Mat_MatTransMultDense *abt; 27374222ddf1SHong Zhang Mat_Product *product = C->product; 27384222ddf1SHong Zhang PetscBool flg; 2739cc48ffa7SToby Isaac 2740cc48ffa7SToby Isaac PetscFunctionBegin; 27416718818eSStefano Zampini MatCheckProduct(C,4); 27426718818eSStefano Zampini if (C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty"); 27434222ddf1SHong Zhang /* check local size of A and B */ 2744637a0070SStefano Zampini if (A->cmap->n != B->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local column dimensions are incompatible, A (%D) != B (%D)",A->cmap->n,B->cmap->n); 2745cc48ffa7SToby Isaac 27464222ddf1SHong Zhang ierr = PetscStrcmp(product->alg,"allgatherv",&flg);CHKERRQ(ierr); 2747637a0070SStefano Zampini alg = flg ? 0 : 1; 2748cc48ffa7SToby Isaac 27494222ddf1SHong Zhang /* setup matrix product C */ 27504222ddf1SHong Zhang ierr = MatSetSizes(C,A->rmap->n,B->rmap->n,A->rmap->N,B->rmap->N);CHKERRQ(ierr); 27514222ddf1SHong Zhang ierr = MatSetType(C,MATMPIDENSE);CHKERRQ(ierr); 275218992e5dSStefano Zampini ierr = MatSetUp(C);CHKERRQ(ierr); 27534222ddf1SHong Zhang ierr = PetscObjectGetNewTag((PetscObject)C,&tag);CHKERRQ(ierr); 27544222ddf1SHong Zhang 27554222ddf1SHong Zhang /* create data structure for reuse C */ 27564222ddf1SHong Zhang ierr = PetscObjectGetComm((PetscObject)C,&comm);CHKERRQ(ierr); 2757ffc4695bSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr); 2758cc48ffa7SToby Isaac ierr = PetscNew(&abt);CHKERRQ(ierr); 2759cc48ffa7SToby Isaac abt->tag = tag; 2760faa55883SToby Isaac abt->alg = alg; 2761faa55883SToby Isaac switch (alg) { 27624222ddf1SHong Zhang case 1: /* alg: "cyclic" */ 2763cc48ffa7SToby Isaac for (maxRows = 0, i = 0; i < size; i++) maxRows = PetscMax(maxRows, (B->rmap->range[i + 1] - B->rmap->range[i])); 2764cc48ffa7SToby Isaac bufsiz = A->cmap->N * maxRows; 2765cc48ffa7SToby Isaac ierr = PetscMalloc2(bufsiz,&(abt->buf[0]),bufsiz,&(abt->buf[1]));CHKERRQ(ierr); 2766faa55883SToby Isaac break; 27674222ddf1SHong Zhang default: /* alg: "allgatherv" */ 2768faa55883SToby Isaac ierr = PetscMalloc2(B->rmap->n * B->cmap->N, &(abt->buf[0]), B->rmap->N * B->cmap->N, &(abt->buf[1]));CHKERRQ(ierr); 2769faa55883SToby Isaac ierr = PetscMalloc2(size,&(abt->recvcounts),size+1,&(abt->recvdispls));CHKERRQ(ierr); 2770faa55883SToby Isaac for (i = 0; i <= size; i++) abt->recvdispls[i] = B->rmap->range[i] * A->cmap->N; 2771faa55883SToby Isaac for (i = 0; i < size; i++) abt->recvcounts[i] = abt->recvdispls[i + 1] - abt->recvdispls[i]; 2772faa55883SToby Isaac break; 2773faa55883SToby Isaac } 2774cc48ffa7SToby Isaac 27756718818eSStefano Zampini C->product->data = abt; 27766718818eSStefano Zampini C->product->destroy = MatDestroy_MatMatTransMult_MPIDense_MPIDense; 27774222ddf1SHong Zhang C->ops->mattransposemultnumeric = MatMatTransposeMultNumeric_MPIDense_MPIDense; 2778cc48ffa7SToby Isaac PetscFunctionReturn(0); 2779cc48ffa7SToby Isaac } 2780cc48ffa7SToby Isaac 2781faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(Mat A, Mat B, Mat C) 2782cc48ffa7SToby Isaac { 2783cc48ffa7SToby Isaac Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 27846718818eSStefano Zampini Mat_MatTransMultDense *abt; 2785cc48ffa7SToby Isaac PetscErrorCode ierr; 2786cc48ffa7SToby Isaac MPI_Comm comm; 2787cc48ffa7SToby Isaac PetscMPIInt rank,size, sendsiz, recvsiz, sendto, recvfrom, recvisfrom; 2788f4259b30SLisandro Dalcin PetscScalar *sendbuf, *recvbuf=NULL, *cv; 2789cc48ffa7SToby Isaac PetscInt i,cK=A->cmap->N,k,j,bn; 2790cc48ffa7SToby Isaac PetscScalar _DOne=1.0,_DZero=0.0; 2791637a0070SStefano Zampini const PetscScalar *av,*bv; 279223fff9afSBarry Smith PetscBLASInt cm, cn, ck, alda, blda = 0, clda; 2793cc48ffa7SToby Isaac MPI_Request reqs[2]; 2794cc48ffa7SToby Isaac const PetscInt *ranges; 2795cc48ffa7SToby Isaac 2796cc48ffa7SToby Isaac PetscFunctionBegin; 27976718818eSStefano Zampini MatCheckProduct(C,3); 27986718818eSStefano Zampini if (!C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 27996718818eSStefano Zampini abt = (Mat_MatTransMultDense*)C->product->data; 28006718818eSStefano Zampini ierr = PetscObjectGetComm((PetscObject)C,&comm);CHKERRQ(ierr); 2801ffc4695bSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRMPI(ierr); 2802ffc4695bSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr); 2803637a0070SStefano Zampini ierr = MatDenseGetArrayRead(a->A,&av);CHKERRQ(ierr); 2804637a0070SStefano Zampini ierr = MatDenseGetArrayRead(b->A,&bv);CHKERRQ(ierr); 28050acaeb71SStefano Zampini ierr = MatDenseGetArrayWrite(c->A,&cv);CHKERRQ(ierr); 2806637a0070SStefano Zampini ierr = MatDenseGetLDA(a->A,&i);CHKERRQ(ierr); 2807637a0070SStefano Zampini ierr = PetscBLASIntCast(i,&alda);CHKERRQ(ierr); 2808637a0070SStefano Zampini ierr = MatDenseGetLDA(b->A,&i);CHKERRQ(ierr); 2809637a0070SStefano Zampini ierr = PetscBLASIntCast(i,&blda);CHKERRQ(ierr); 2810637a0070SStefano Zampini ierr = MatDenseGetLDA(c->A,&i);CHKERRQ(ierr); 2811637a0070SStefano Zampini ierr = PetscBLASIntCast(i,&clda);CHKERRQ(ierr); 2812cc48ffa7SToby Isaac ierr = MatGetOwnershipRanges(B,&ranges);CHKERRQ(ierr); 2813cc48ffa7SToby Isaac bn = B->rmap->n; 2814637a0070SStefano Zampini if (blda == bn) { 2815637a0070SStefano Zampini sendbuf = (PetscScalar*)bv; 2816cc48ffa7SToby Isaac } else { 2817cc48ffa7SToby Isaac sendbuf = abt->buf[0]; 2818cc48ffa7SToby Isaac for (k = 0, i = 0; i < cK; i++) { 2819cc48ffa7SToby Isaac for (j = 0; j < bn; j++, k++) { 2820637a0070SStefano Zampini sendbuf[k] = bv[i * blda + j]; 2821cc48ffa7SToby Isaac } 2822cc48ffa7SToby Isaac } 2823cc48ffa7SToby Isaac } 2824cc48ffa7SToby Isaac if (size > 1) { 2825cc48ffa7SToby Isaac sendto = (rank + size - 1) % size; 2826cc48ffa7SToby Isaac recvfrom = (rank + size + 1) % size; 2827cc48ffa7SToby Isaac } else { 2828cc48ffa7SToby Isaac sendto = recvfrom = 0; 2829cc48ffa7SToby Isaac } 2830cc48ffa7SToby Isaac ierr = PetscBLASIntCast(cK,&ck);CHKERRQ(ierr); 2831cc48ffa7SToby Isaac ierr = PetscBLASIntCast(c->A->rmap->n,&cm);CHKERRQ(ierr); 2832cc48ffa7SToby Isaac recvisfrom = rank; 2833cc48ffa7SToby Isaac for (i = 0; i < size; i++) { 2834cc48ffa7SToby Isaac /* we have finished receiving in sending, bufs can be read/modified */ 2835cc48ffa7SToby Isaac PetscInt nextrecvisfrom = (recvisfrom + 1) % size; /* which process the next recvbuf will originate on */ 2836cc48ffa7SToby Isaac PetscInt nextbn = ranges[nextrecvisfrom + 1] - ranges[nextrecvisfrom]; 2837cc48ffa7SToby Isaac 2838cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2839cc48ffa7SToby Isaac /* start the cyclic sends from sendbuf, to recvbuf (which will switch to sendbuf) */ 2840cc48ffa7SToby Isaac sendsiz = cK * bn; 2841cc48ffa7SToby Isaac recvsiz = cK * nextbn; 2842cc48ffa7SToby Isaac recvbuf = (i & 1) ? abt->buf[0] : abt->buf[1]; 2843ffc4695bSBarry Smith ierr = MPI_Isend(sendbuf, sendsiz, MPIU_SCALAR, sendto, abt->tag, comm, &reqs[0]);CHKERRMPI(ierr); 2844ffc4695bSBarry Smith ierr = MPI_Irecv(recvbuf, recvsiz, MPIU_SCALAR, recvfrom, abt->tag, comm, &reqs[1]);CHKERRMPI(ierr); 2845cc48ffa7SToby Isaac } 2846cc48ffa7SToby Isaac 2847cc48ffa7SToby Isaac /* local aseq * sendbuf^T */ 2848cc48ffa7SToby Isaac ierr = PetscBLASIntCast(ranges[recvisfrom + 1] - ranges[recvisfrom], &cn);CHKERRQ(ierr); 284950ce3c9cSStefano Zampini if (cm && cn && ck) PetscStackCallBLAS("BLASgemm",BLASgemm_("N","T",&cm,&cn,&ck,&_DOne,av,&alda,sendbuf,&cn,&_DZero,cv + clda * ranges[recvisfrom],&clda)); 2850cc48ffa7SToby Isaac 2851cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2852cc48ffa7SToby Isaac /* wait for the sends and receives to complete, swap sendbuf and recvbuf */ 2853ffc4695bSBarry Smith ierr = MPI_Waitall(2, reqs, MPI_STATUSES_IGNORE);CHKERRMPI(ierr); 2854cc48ffa7SToby Isaac } 2855cc48ffa7SToby Isaac bn = nextbn; 2856cc48ffa7SToby Isaac recvisfrom = nextrecvisfrom; 2857cc48ffa7SToby Isaac sendbuf = recvbuf; 2858cc48ffa7SToby Isaac } 2859637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(a->A,&av);CHKERRQ(ierr); 2860637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(b->A,&bv);CHKERRQ(ierr); 28610acaeb71SStefano Zampini ierr = MatDenseRestoreArrayWrite(c->A,&cv);CHKERRQ(ierr); 28620acaeb71SStefano Zampini ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 28630acaeb71SStefano Zampini ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2864cc48ffa7SToby Isaac PetscFunctionReturn(0); 2865cc48ffa7SToby Isaac } 2866cc48ffa7SToby Isaac 2867faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(Mat A, Mat B, Mat C) 2868faa55883SToby Isaac { 2869faa55883SToby Isaac Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 28706718818eSStefano Zampini Mat_MatTransMultDense *abt; 2871faa55883SToby Isaac PetscErrorCode ierr; 2872faa55883SToby Isaac MPI_Comm comm; 2873637a0070SStefano Zampini PetscMPIInt size; 2874637a0070SStefano Zampini PetscScalar *cv, *sendbuf, *recvbuf; 2875637a0070SStefano Zampini const PetscScalar *av,*bv; 2876637a0070SStefano Zampini PetscInt blda,i,cK=A->cmap->N,k,j,bn; 2877faa55883SToby Isaac PetscScalar _DOne=1.0,_DZero=0.0; 2878637a0070SStefano Zampini PetscBLASInt cm, cn, ck, alda, clda; 2879faa55883SToby Isaac 2880faa55883SToby Isaac PetscFunctionBegin; 28816718818eSStefano Zampini MatCheckProduct(C,3); 28826718818eSStefano Zampini if (!C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 28836718818eSStefano Zampini abt = (Mat_MatTransMultDense*)C->product->data; 2884faa55883SToby Isaac ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 2885ffc4695bSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr); 2886637a0070SStefano Zampini ierr = MatDenseGetArrayRead(a->A,&av);CHKERRQ(ierr); 2887637a0070SStefano Zampini ierr = MatDenseGetArrayRead(b->A,&bv);CHKERRQ(ierr); 28880acaeb71SStefano Zampini ierr = MatDenseGetArrayWrite(c->A,&cv);CHKERRQ(ierr); 2889637a0070SStefano Zampini ierr = MatDenseGetLDA(a->A,&i);CHKERRQ(ierr); 2890637a0070SStefano Zampini ierr = PetscBLASIntCast(i,&alda);CHKERRQ(ierr); 2891637a0070SStefano Zampini ierr = MatDenseGetLDA(b->A,&blda);CHKERRQ(ierr); 2892637a0070SStefano Zampini ierr = MatDenseGetLDA(c->A,&i);CHKERRQ(ierr); 2893637a0070SStefano Zampini ierr = PetscBLASIntCast(i,&clda);CHKERRQ(ierr); 2894faa55883SToby Isaac /* copy transpose of B into buf[0] */ 2895faa55883SToby Isaac bn = B->rmap->n; 2896faa55883SToby Isaac sendbuf = abt->buf[0]; 2897faa55883SToby Isaac recvbuf = abt->buf[1]; 2898faa55883SToby Isaac for (k = 0, j = 0; j < bn; j++) { 2899faa55883SToby Isaac for (i = 0; i < cK; i++, k++) { 2900637a0070SStefano Zampini sendbuf[k] = bv[i * blda + j]; 2901faa55883SToby Isaac } 2902faa55883SToby Isaac } 2903637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(b->A,&bv);CHKERRQ(ierr); 2904ffc4695bSBarry Smith ierr = MPI_Allgatherv(sendbuf, bn * cK, MPIU_SCALAR, recvbuf, abt->recvcounts, abt->recvdispls, MPIU_SCALAR, comm);CHKERRMPI(ierr); 2905faa55883SToby Isaac ierr = PetscBLASIntCast(cK,&ck);CHKERRQ(ierr); 2906faa55883SToby Isaac ierr = PetscBLASIntCast(c->A->rmap->n,&cm);CHKERRQ(ierr); 2907faa55883SToby Isaac ierr = PetscBLASIntCast(c->A->cmap->n,&cn);CHKERRQ(ierr); 290850ce3c9cSStefano Zampini if (cm && cn && ck) PetscStackCallBLAS("BLASgemm",BLASgemm_("N","N",&cm,&cn,&ck,&_DOne,av,&alda,recvbuf,&ck,&_DZero,cv,&clda)); 2909637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(a->A,&av);CHKERRQ(ierr); 2910637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(b->A,&bv);CHKERRQ(ierr); 29110acaeb71SStefano Zampini ierr = MatDenseRestoreArrayWrite(c->A,&cv);CHKERRQ(ierr); 29120acaeb71SStefano Zampini ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 29130acaeb71SStefano Zampini ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2914faa55883SToby Isaac PetscFunctionReturn(0); 2915faa55883SToby Isaac } 2916faa55883SToby Isaac 2917faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat A, Mat B, Mat C) 2918faa55883SToby Isaac { 29196718818eSStefano Zampini Mat_MatTransMultDense *abt; 2920faa55883SToby Isaac PetscErrorCode ierr; 2921faa55883SToby Isaac 2922faa55883SToby Isaac PetscFunctionBegin; 29236718818eSStefano Zampini MatCheckProduct(C,3); 29246718818eSStefano Zampini if (!C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 29256718818eSStefano Zampini abt = (Mat_MatTransMultDense*)C->product->data; 2926faa55883SToby Isaac switch (abt->alg) { 2927faa55883SToby Isaac case 1: 2928faa55883SToby Isaac ierr = MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(A, B, C);CHKERRQ(ierr); 2929faa55883SToby Isaac break; 2930faa55883SToby Isaac default: 2931faa55883SToby Isaac ierr = MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(A, B, C);CHKERRQ(ierr); 2932faa55883SToby Isaac break; 2933faa55883SToby Isaac } 2934faa55883SToby Isaac PetscFunctionReturn(0); 2935faa55883SToby Isaac } 2936faa55883SToby Isaac 29376718818eSStefano Zampini PetscErrorCode MatDestroy_MatMatMult_MPIDense_MPIDense(void *data) 2938320f2790SHong Zhang { 2939320f2790SHong Zhang PetscErrorCode ierr; 29406718818eSStefano Zampini Mat_MatMultDense *ab = (Mat_MatMultDense*)data; 2941320f2790SHong Zhang 2942320f2790SHong Zhang PetscFunctionBegin; 2943320f2790SHong Zhang ierr = MatDestroy(&ab->Ce);CHKERRQ(ierr); 2944320f2790SHong Zhang ierr = MatDestroy(&ab->Ae);CHKERRQ(ierr); 2945320f2790SHong Zhang ierr = MatDestroy(&ab->Be);CHKERRQ(ierr); 2946320f2790SHong Zhang ierr = PetscFree(ab);CHKERRQ(ierr); 2947320f2790SHong Zhang PetscFunctionReturn(0); 2948320f2790SHong Zhang } 2949320f2790SHong Zhang 29505242a7b1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 2951320f2790SHong Zhang PetscErrorCode MatMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 2952320f2790SHong Zhang { 2953320f2790SHong Zhang PetscErrorCode ierr; 29546718818eSStefano Zampini Mat_MatMultDense *ab; 2955320f2790SHong Zhang 2956320f2790SHong Zhang PetscFunctionBegin; 29576718818eSStefano Zampini MatCheckProduct(C,3); 29586718818eSStefano Zampini if (!C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Missing product data"); 29596718818eSStefano Zampini ab = (Mat_MatMultDense*)C->product->data; 2960de0a22f0SHong Zhang ierr = MatConvert_MPIDense_Elemental(A,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Ae);CHKERRQ(ierr); 2961de0a22f0SHong Zhang ierr = MatConvert_MPIDense_Elemental(B,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Be);CHKERRQ(ierr); 29624222ddf1SHong Zhang ierr = MatMatMultNumeric_Elemental(ab->Ae,ab->Be,ab->Ce);CHKERRQ(ierr); 2963de0a22f0SHong Zhang ierr = MatConvert(ab->Ce,MATMPIDENSE,MAT_REUSE_MATRIX,&C);CHKERRQ(ierr); 2964320f2790SHong Zhang PetscFunctionReturn(0); 2965320f2790SHong Zhang } 2966320f2790SHong Zhang 29676718818eSStefano Zampini static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat C) 2968320f2790SHong Zhang { 2969320f2790SHong Zhang PetscErrorCode ierr; 2970320f2790SHong Zhang Mat Ae,Be,Ce; 2971320f2790SHong Zhang Mat_MatMultDense *ab; 2972320f2790SHong Zhang 2973320f2790SHong Zhang PetscFunctionBegin; 29746718818eSStefano Zampini MatCheckProduct(C,4); 29756718818eSStefano Zampini if (C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty"); 29764222ddf1SHong Zhang /* check local size of A and B */ 2977320f2790SHong Zhang if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend) { 2978378336b6SHong Zhang SETERRQ4(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != B (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 2979320f2790SHong Zhang } 2980320f2790SHong Zhang 29814222ddf1SHong Zhang /* create elemental matrices Ae and Be */ 29824222ddf1SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)A), &Ae);CHKERRQ(ierr); 29834222ddf1SHong Zhang ierr = MatSetSizes(Ae,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 29844222ddf1SHong Zhang ierr = MatSetType(Ae,MATELEMENTAL);CHKERRQ(ierr); 29854222ddf1SHong Zhang ierr = MatSetUp(Ae);CHKERRQ(ierr); 29864222ddf1SHong Zhang ierr = MatSetOption(Ae,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 2987320f2790SHong Zhang 29884222ddf1SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)B), &Be);CHKERRQ(ierr); 29894222ddf1SHong Zhang ierr = MatSetSizes(Be,PETSC_DECIDE,PETSC_DECIDE,B->rmap->N,B->cmap->N);CHKERRQ(ierr); 29904222ddf1SHong Zhang ierr = MatSetType(Be,MATELEMENTAL);CHKERRQ(ierr); 29914222ddf1SHong Zhang ierr = MatSetUp(Be);CHKERRQ(ierr); 29924222ddf1SHong Zhang ierr = MatSetOption(Be,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 2993320f2790SHong Zhang 29944222ddf1SHong Zhang /* compute symbolic Ce = Ae*Be */ 29954222ddf1SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)C),&Ce);CHKERRQ(ierr); 29964222ddf1SHong Zhang ierr = MatMatMultSymbolic_Elemental(Ae,Be,fill,Ce);CHKERRQ(ierr); 29974222ddf1SHong Zhang 29984222ddf1SHong Zhang /* setup C */ 29994222ddf1SHong Zhang ierr = MatSetSizes(C,A->rmap->n,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 30004222ddf1SHong Zhang ierr = MatSetType(C,MATDENSE);CHKERRQ(ierr); 30014222ddf1SHong Zhang ierr = MatSetUp(C);CHKERRQ(ierr); 3002320f2790SHong Zhang 3003320f2790SHong Zhang /* create data structure for reuse Cdense */ 3004320f2790SHong Zhang ierr = PetscNew(&ab);CHKERRQ(ierr); 3005320f2790SHong Zhang ab->Ae = Ae; 3006320f2790SHong Zhang ab->Be = Be; 3007320f2790SHong Zhang ab->Ce = Ce; 30086718818eSStefano Zampini 30096718818eSStefano Zampini C->product->data = ab; 30106718818eSStefano Zampini C->product->destroy = MatDestroy_MatMatMult_MPIDense_MPIDense; 30114222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIDense; 3012320f2790SHong Zhang PetscFunctionReturn(0); 3013320f2790SHong Zhang } 30144222ddf1SHong Zhang #endif 30154222ddf1SHong Zhang /* ----------------------------------------------- */ 30164222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 30174222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_AB(Mat C) 3018320f2790SHong Zhang { 3019320f2790SHong Zhang PetscFunctionBegin; 30204222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIDense; 30214222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 3022320f2790SHong Zhang PetscFunctionReturn(0); 3023320f2790SHong Zhang } 30245242a7b1SHong Zhang #endif 302586aefd0dSHong Zhang 30264222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_AtB(Mat C) 30274222ddf1SHong Zhang { 30284222ddf1SHong Zhang Mat_Product *product = C->product; 30294222ddf1SHong Zhang Mat A = product->A,B=product->B; 30304222ddf1SHong Zhang 30314222ddf1SHong Zhang PetscFunctionBegin; 30324222ddf1SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) 30334222ddf1SHong Zhang SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, (%D, %D) != (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 30346718818eSStefano Zampini C->ops->transposematmultsymbolic = MatTransposeMatMultSymbolic_MPIDense_MPIDense; 30356718818eSStefano Zampini C->ops->productsymbolic = MatProductSymbolic_AtB; 30364222ddf1SHong Zhang PetscFunctionReturn(0); 30374222ddf1SHong Zhang } 30384222ddf1SHong Zhang 30394222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_ABt(Mat C) 30404222ddf1SHong Zhang { 30414222ddf1SHong Zhang PetscErrorCode ierr; 30424222ddf1SHong Zhang Mat_Product *product = C->product; 30434222ddf1SHong Zhang const char *algTypes[2] = {"allgatherv","cyclic"}; 30444222ddf1SHong Zhang PetscInt alg,nalg = 2; 30454222ddf1SHong Zhang PetscBool flg = PETSC_FALSE; 30464222ddf1SHong Zhang 30474222ddf1SHong Zhang PetscFunctionBegin; 30484222ddf1SHong Zhang /* Set default algorithm */ 30494222ddf1SHong Zhang alg = 0; /* default is allgatherv */ 30504222ddf1SHong Zhang ierr = PetscStrcmp(product->alg,"default",&flg);CHKERRQ(ierr); 30514222ddf1SHong Zhang if (flg) { 30524222ddf1SHong Zhang ierr = MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]);CHKERRQ(ierr); 30534222ddf1SHong Zhang } 30544222ddf1SHong Zhang 30554222ddf1SHong Zhang /* Get runtime option */ 30564222ddf1SHong Zhang if (product->api_user) { 30574222ddf1SHong Zhang ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatMatTransposeMult","Mat");CHKERRQ(ierr); 30584222ddf1SHong Zhang ierr = PetscOptionsEList("-matmattransmult_mpidense_mpidense_via","Algorithmic approach","MatMatTransposeMult",algTypes,nalg,algTypes[alg],&alg,&flg);CHKERRQ(ierr); 30594222ddf1SHong Zhang ierr = PetscOptionsEnd();CHKERRQ(ierr); 30604222ddf1SHong Zhang } else { 30614222ddf1SHong Zhang ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatProduct_ABt","Mat");CHKERRQ(ierr); 30624222ddf1SHong Zhang ierr = PetscOptionsEList("-matproduct_abt_mpidense_mpidense_via","Algorithmic approach","MatProduct_ABt",algTypes,nalg,algTypes[alg],&alg,&flg);CHKERRQ(ierr); 30634222ddf1SHong Zhang ierr = PetscOptionsEnd();CHKERRQ(ierr); 30644222ddf1SHong Zhang } 30654222ddf1SHong Zhang if (flg) { 30664222ddf1SHong Zhang ierr = MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]);CHKERRQ(ierr); 30674222ddf1SHong Zhang } 30684222ddf1SHong Zhang 30694222ddf1SHong Zhang C->ops->mattransposemultsymbolic = MatMatTransposeMultSymbolic_MPIDense_MPIDense; 30704222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_ABt; 30714222ddf1SHong Zhang PetscFunctionReturn(0); 30724222ddf1SHong Zhang } 30734222ddf1SHong Zhang 30744222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense(Mat C) 30754222ddf1SHong Zhang { 30764222ddf1SHong Zhang PetscErrorCode ierr; 30774222ddf1SHong Zhang Mat_Product *product = C->product; 30784222ddf1SHong Zhang 30794222ddf1SHong Zhang PetscFunctionBegin; 30804222ddf1SHong Zhang switch (product->type) { 30814222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 30824222ddf1SHong Zhang case MATPRODUCT_AB: 30834222ddf1SHong Zhang ierr = MatProductSetFromOptions_MPIDense_AB(C);CHKERRQ(ierr); 30844222ddf1SHong Zhang break; 30854222ddf1SHong Zhang #endif 30864222ddf1SHong Zhang case MATPRODUCT_AtB: 30874222ddf1SHong Zhang ierr = MatProductSetFromOptions_MPIDense_AtB(C);CHKERRQ(ierr); 30884222ddf1SHong Zhang break; 30894222ddf1SHong Zhang case MATPRODUCT_ABt: 30904222ddf1SHong Zhang ierr = MatProductSetFromOptions_MPIDense_ABt(C);CHKERRQ(ierr); 30914222ddf1SHong Zhang break; 30926718818eSStefano Zampini default: 30936718818eSStefano Zampini break; 30944222ddf1SHong Zhang } 30954222ddf1SHong Zhang PetscFunctionReturn(0); 30964222ddf1SHong Zhang } 3097