1be1d678aSKris Buschelman 2ed3cc1f0SBarry Smith /* 3ed3cc1f0SBarry Smith Basic functions for basic parallel dense matrices. 4ed3cc1f0SBarry Smith */ 5ed3cc1f0SBarry Smith 6c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h> /*I "petscmat.h" I*/ 78949adfdSHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 8baa3c1c6SHong Zhang #include <petscblaslapack.h> 98965ea79SLois Curfman McInnes 10ab92ecdeSBarry Smith /*@ 11ab92ecdeSBarry Smith 12ab92ecdeSBarry Smith MatDenseGetLocalMatrix - For a MATMPIDENSE or MATSEQDENSE matrix returns the sequential 13ab92ecdeSBarry Smith matrix that represents the operator. For sequential matrices it returns itself. 14ab92ecdeSBarry Smith 15ab92ecdeSBarry Smith Input Parameter: 16ab92ecdeSBarry Smith . A - the Seq or MPI dense matrix 17ab92ecdeSBarry Smith 18ab92ecdeSBarry Smith Output Parameter: 19ab92ecdeSBarry Smith . B - the inner matrix 20ab92ecdeSBarry Smith 218e6c10adSSatish Balay Level: intermediate 228e6c10adSSatish Balay 23ab92ecdeSBarry Smith @*/ 24ab92ecdeSBarry Smith PetscErrorCode MatDenseGetLocalMatrix(Mat A,Mat *B) 25ab92ecdeSBarry Smith { 26ab92ecdeSBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 27ab92ecdeSBarry Smith PetscErrorCode ierr; 28ace3abfcSBarry Smith PetscBool flg; 29ab92ecdeSBarry Smith 30ab92ecdeSBarry Smith PetscFunctionBegin; 31d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 32d5ea218eSStefano Zampini PetscValidPointer(B,2); 33f140bc17SStefano Zampini ierr = PetscObjectBaseTypeCompare((PetscObject)A,MATMPIDENSE,&flg);CHKERRQ(ierr); 342205254eSKarl Rupp if (flg) *B = mat->A; 35f140bc17SStefano Zampini else { 36f140bc17SStefano Zampini ierr = PetscObjectBaseTypeCompare((PetscObject)A,MATSEQDENSE,&flg);CHKERRQ(ierr); 37f140bc17SStefano Zampini if (!flg) SETERRQ1(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Not for matrix type %s",((PetscObject)A)->type_name); 38f140bc17SStefano Zampini *B = A; 39f140bc17SStefano Zampini } 40ab92ecdeSBarry Smith PetscFunctionReturn(0); 41ab92ecdeSBarry Smith } 42ab92ecdeSBarry Smith 43*a76f77c3SStefano Zampini PetscErrorCode MatCopy_MPIDense(Mat A, Mat B, MatStructure s) 44*a76f77c3SStefano Zampini { 45*a76f77c3SStefano Zampini Mat_MPIDense *Amat = (Mat_MPIDense*)A->data; 46*a76f77c3SStefano Zampini Mat_MPIDense *Bmat = (Mat_MPIDense*)B->data; 47*a76f77c3SStefano Zampini PetscErrorCode ierr; 48*a76f77c3SStefano Zampini 49*a76f77c3SStefano Zampini PetscFunctionBegin; 50*a76f77c3SStefano Zampini ierr = MatCopy(Amat->A,Bmat->A,s);CHKERRQ(ierr); 51*a76f77c3SStefano Zampini PetscFunctionReturn(0); 52*a76f77c3SStefano Zampini } 53*a76f77c3SStefano Zampini 54ba8c8a56SBarry Smith PetscErrorCode MatGetRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 55ba8c8a56SBarry Smith { 56ba8c8a56SBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 57ba8c8a56SBarry Smith PetscErrorCode ierr; 58d0f46423SBarry Smith PetscInt lrow,rstart = A->rmap->rstart,rend = A->rmap->rend; 59ba8c8a56SBarry Smith 60ba8c8a56SBarry Smith PetscFunctionBegin; 61e7e72b3dSBarry Smith if (row < rstart || row >= rend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows"); 62ba8c8a56SBarry Smith lrow = row - rstart; 63ba8c8a56SBarry Smith ierr = MatGetRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v);CHKERRQ(ierr); 64ba8c8a56SBarry Smith PetscFunctionReturn(0); 65ba8c8a56SBarry Smith } 66ba8c8a56SBarry Smith 67637a0070SStefano Zampini PetscErrorCode MatRestoreRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 68ba8c8a56SBarry Smith { 69637a0070SStefano Zampini Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 70ba8c8a56SBarry Smith PetscErrorCode ierr; 71637a0070SStefano Zampini PetscInt lrow,rstart = A->rmap->rstart,rend = A->rmap->rend; 72ba8c8a56SBarry Smith 73ba8c8a56SBarry Smith PetscFunctionBegin; 74637a0070SStefano Zampini if (row < rstart || row >= rend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows"); 75637a0070SStefano Zampini lrow = row - rstart; 76637a0070SStefano Zampini ierr = MatRestoreRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v);CHKERRQ(ierr); 77ba8c8a56SBarry Smith PetscFunctionReturn(0); 78ba8c8a56SBarry Smith } 79ba8c8a56SBarry Smith 8011bd1e4dSLisandro Dalcin PetscErrorCode MatGetDiagonalBlock_MPIDense(Mat A,Mat *a) 810de54da6SSatish Balay { 820de54da6SSatish Balay Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 836849ba73SBarry Smith PetscErrorCode ierr; 84d0f46423SBarry Smith PetscInt m = A->rmap->n,rstart = A->rmap->rstart; 8587828ca2SBarry Smith PetscScalar *array; 860de54da6SSatish Balay MPI_Comm comm; 874b6ae80fSStefano Zampini PetscBool flg; 8811bd1e4dSLisandro Dalcin Mat B; 890de54da6SSatish Balay 900de54da6SSatish Balay PetscFunctionBegin; 914b6ae80fSStefano Zampini ierr = MatHasCongruentLayouts(A,&flg);CHKERRQ(ierr); 924b6ae80fSStefano Zampini if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only square matrices supported."); 9311bd1e4dSLisandro Dalcin ierr = PetscObjectQuery((PetscObject)A,"DiagonalBlock",(PetscObject*)&B);CHKERRQ(ierr); 94616b8fbbSStefano Zampini if (!B) { /* This should use MatDenseGetSubMatrix (not create), but we would need a call like MatRestoreDiagonalBlock */ 954b6ae80fSStefano Zampini 964b6ae80fSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)mdn->A,MATSEQDENSECUDA,&flg);CHKERRQ(ierr); 974b6ae80fSStefano Zampini if (flg) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Not coded for %s. Send an email to petsc-dev@mcs.anl.gov to request this feature",MATSEQDENSECUDA); 980de54da6SSatish Balay ierr = PetscObjectGetComm((PetscObject)(mdn->A),&comm);CHKERRQ(ierr); 9911bd1e4dSLisandro Dalcin ierr = MatCreate(comm,&B);CHKERRQ(ierr); 10011bd1e4dSLisandro Dalcin ierr = MatSetSizes(B,m,m,m,m);CHKERRQ(ierr); 10111bd1e4dSLisandro Dalcin ierr = MatSetType(B,((PetscObject)mdn->A)->type_name);CHKERRQ(ierr); 1024b6ae80fSStefano Zampini ierr = MatDenseGetArrayRead(mdn->A,(const PetscScalar**)&array);CHKERRQ(ierr); 10311bd1e4dSLisandro Dalcin ierr = MatSeqDenseSetPreallocation(B,array+m*rstart);CHKERRQ(ierr); 1044b6ae80fSStefano Zampini ierr = MatDenseRestoreArrayRead(mdn->A,(const PetscScalar**)&array);CHKERRQ(ierr); 10511bd1e4dSLisandro Dalcin ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 10611bd1e4dSLisandro Dalcin ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 10711bd1e4dSLisandro Dalcin ierr = PetscObjectCompose((PetscObject)A,"DiagonalBlock",(PetscObject)B);CHKERRQ(ierr); 10811bd1e4dSLisandro Dalcin *a = B; 10911bd1e4dSLisandro Dalcin ierr = MatDestroy(&B);CHKERRQ(ierr); 1102205254eSKarl Rupp } else *a = B; 1110de54da6SSatish Balay PetscFunctionReturn(0); 1120de54da6SSatish Balay } 1130de54da6SSatish Balay 11413f74950SBarry Smith PetscErrorCode MatSetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],const PetscScalar v[],InsertMode addv) 1158965ea79SLois Curfman McInnes { 11639b7565bSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)mat->data; 117dfbe8321SBarry Smith PetscErrorCode ierr; 118d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 119ace3abfcSBarry Smith PetscBool roworiented = A->roworiented; 1208965ea79SLois Curfman McInnes 1213a40ed3dSBarry Smith PetscFunctionBegin; 1228965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 1235ef9f2a5SBarry Smith if (idxm[i] < 0) continue; 124e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 1258965ea79SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 1268965ea79SLois Curfman McInnes row = idxm[i] - rstart; 12739b7565bSBarry Smith if (roworiented) { 12839b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv);CHKERRQ(ierr); 1293a40ed3dSBarry Smith } else { 1308965ea79SLois Curfman McInnes for (j=0; j<n; j++) { 1315ef9f2a5SBarry Smith if (idxn[j] < 0) continue; 132e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 13339b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv);CHKERRQ(ierr); 13439b7565bSBarry Smith } 1358965ea79SLois Curfman McInnes } 1362205254eSKarl Rupp } else if (!A->donotstash) { 1375080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 13839b7565bSBarry Smith if (roworiented) { 139b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,idxm[i],n,idxn,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 140d36fbae8SSatish Balay } else { 141b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,idxm[i],n,idxn,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 14239b7565bSBarry Smith } 143b49de8d1SLois Curfman McInnes } 144b49de8d1SLois Curfman McInnes } 1453a40ed3dSBarry Smith PetscFunctionReturn(0); 146b49de8d1SLois Curfman McInnes } 147b49de8d1SLois Curfman McInnes 14813f74950SBarry Smith PetscErrorCode MatGetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 149b49de8d1SLois Curfman McInnes { 150b49de8d1SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 151dfbe8321SBarry Smith PetscErrorCode ierr; 152d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 153b49de8d1SLois Curfman McInnes 1543a40ed3dSBarry Smith PetscFunctionBegin; 155b49de8d1SLois Curfman McInnes for (i=0; i<m; i++) { 156e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); */ 157e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 158b49de8d1SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 159b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 160b49de8d1SLois Curfman McInnes for (j=0; j<n; j++) { 161e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); */ 162e7e72b3dSBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 163b49de8d1SLois Curfman McInnes ierr = MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j);CHKERRQ(ierr); 164b49de8d1SLois Curfman McInnes } 165e7e72b3dSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 1668965ea79SLois Curfman McInnes } 1673a40ed3dSBarry Smith PetscFunctionReturn(0); 1688965ea79SLois Curfman McInnes } 1698965ea79SLois Curfman McInnes 17049a6ff4bSBarry Smith static PetscErrorCode MatDenseGetLDA_MPIDense(Mat A,PetscInt *lda) 17149a6ff4bSBarry Smith { 17249a6ff4bSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17349a6ff4bSBarry Smith PetscErrorCode ierr; 17449a6ff4bSBarry Smith 17549a6ff4bSBarry Smith PetscFunctionBegin; 17649a6ff4bSBarry Smith ierr = MatDenseGetLDA(a->A,lda);CHKERRQ(ierr); 17749a6ff4bSBarry Smith PetscFunctionReturn(0); 17849a6ff4bSBarry Smith } 17949a6ff4bSBarry Smith 180ad16ce7aSStefano Zampini static PetscErrorCode MatDenseSetLDA_MPIDense(Mat A,PetscInt lda) 181ad16ce7aSStefano Zampini { 182ad16ce7aSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 18317359960SJose E. Roman PetscBool iscuda; 184ad16ce7aSStefano Zampini PetscErrorCode ierr; 185ad16ce7aSStefano Zampini 186ad16ce7aSStefano Zampini PetscFunctionBegin; 18717359960SJose E. Roman if (!a->A) { 18817359960SJose E. Roman if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 18917359960SJose E. Roman ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr); 19017359960SJose E. Roman ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr); 19117359960SJose E. Roman ierr = MatCreate(PETSC_COMM_SELF,&a->A);CHKERRQ(ierr); 19217359960SJose E. Roman ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)a->A);CHKERRQ(ierr); 19317359960SJose E. Roman ierr = MatSetSizes(a->A,A->rmap->n,A->cmap->N,A->rmap->n,A->cmap->N);CHKERRQ(ierr); 19417359960SJose E. Roman ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIDENSECUDA,&iscuda);CHKERRQ(ierr); 19517359960SJose E. Roman ierr = MatSetType(a->A,iscuda ? MATSEQDENSECUDA : MATSEQDENSE);CHKERRQ(ierr); 19617359960SJose E. Roman } 197ad16ce7aSStefano Zampini ierr = MatDenseSetLDA(a->A,lda);CHKERRQ(ierr); 198ad16ce7aSStefano Zampini PetscFunctionReturn(0); 199ad16ce7aSStefano Zampini } 200ad16ce7aSStefano Zampini 201637a0070SStefano Zampini static PetscErrorCode MatDenseGetArray_MPIDense(Mat A,PetscScalar **array) 202ff14e315SSatish Balay { 203ff14e315SSatish Balay Mat_MPIDense *a = (Mat_MPIDense*)A->data; 204dfbe8321SBarry Smith PetscErrorCode ierr; 205ff14e315SSatish Balay 2063a40ed3dSBarry Smith PetscFunctionBegin; 207616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2088c778c55SBarry Smith ierr = MatDenseGetArray(a->A,array);CHKERRQ(ierr); 2093a40ed3dSBarry Smith PetscFunctionReturn(0); 210ff14e315SSatish Balay } 211ff14e315SSatish Balay 212637a0070SStefano Zampini static PetscErrorCode MatDenseGetArrayRead_MPIDense(Mat A,const PetscScalar **array) 2138572280aSBarry Smith { 2148572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 2158572280aSBarry Smith PetscErrorCode ierr; 2168572280aSBarry Smith 2178572280aSBarry Smith PetscFunctionBegin; 218616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2198572280aSBarry Smith ierr = MatDenseGetArrayRead(a->A,array);CHKERRQ(ierr); 2208572280aSBarry Smith PetscFunctionReturn(0); 2218572280aSBarry Smith } 2228572280aSBarry Smith 2236947451fSStefano Zampini static PetscErrorCode MatDenseGetArrayWrite_MPIDense(Mat A,PetscScalar **array) 2246947451fSStefano Zampini { 2256947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 2266947451fSStefano Zampini PetscErrorCode ierr; 2276947451fSStefano Zampini 2286947451fSStefano Zampini PetscFunctionBegin; 229616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2306947451fSStefano Zampini ierr = MatDenseGetArrayWrite(a->A,array);CHKERRQ(ierr); 2316947451fSStefano Zampini PetscFunctionReturn(0); 2326947451fSStefano Zampini } 2336947451fSStefano Zampini 234637a0070SStefano Zampini static PetscErrorCode MatDensePlaceArray_MPIDense(Mat A,const PetscScalar *array) 235d3042a70SBarry Smith { 236d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 237d3042a70SBarry Smith PetscErrorCode ierr; 238d3042a70SBarry Smith 239d3042a70SBarry Smith PetscFunctionBegin; 240616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 241616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 242d3042a70SBarry Smith ierr = MatDensePlaceArray(a->A,array);CHKERRQ(ierr); 243d3042a70SBarry Smith PetscFunctionReturn(0); 244d3042a70SBarry Smith } 245d3042a70SBarry Smith 246d3042a70SBarry Smith static PetscErrorCode MatDenseResetArray_MPIDense(Mat A) 247d3042a70SBarry Smith { 248d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 249d3042a70SBarry Smith PetscErrorCode ierr; 250d3042a70SBarry Smith 251d3042a70SBarry Smith PetscFunctionBegin; 252616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 253616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 254d3042a70SBarry Smith ierr = MatDenseResetArray(a->A);CHKERRQ(ierr); 255d3042a70SBarry Smith PetscFunctionReturn(0); 256d3042a70SBarry Smith } 257d3042a70SBarry Smith 258d5ea218eSStefano Zampini static PetscErrorCode MatDenseReplaceArray_MPIDense(Mat A,const PetscScalar *array) 259d5ea218eSStefano Zampini { 260d5ea218eSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 261d5ea218eSStefano Zampini PetscErrorCode ierr; 262d5ea218eSStefano Zampini 263d5ea218eSStefano Zampini PetscFunctionBegin; 264616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 265616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 266d5ea218eSStefano Zampini ierr = MatDenseReplaceArray(a->A,array);CHKERRQ(ierr); 267d5ea218eSStefano Zampini PetscFunctionReturn(0); 268d5ea218eSStefano Zampini } 269d5ea218eSStefano Zampini 2707dae84e0SHong Zhang static PetscErrorCode MatCreateSubMatrix_MPIDense(Mat A,IS isrow,IS iscol,MatReuse scall,Mat *B) 271ca3fa75bSLois Curfman McInnes { 272ca3fa75bSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data,*newmatd; 2736849ba73SBarry Smith PetscErrorCode ierr; 274637a0070SStefano Zampini PetscInt lda,i,j,rstart,rend,nrows,ncols,Ncols,nlrows,nlcols; 2755d0c19d7SBarry Smith const PetscInt *irow,*icol; 276637a0070SStefano Zampini const PetscScalar *v; 277637a0070SStefano Zampini PetscScalar *bv; 278ca3fa75bSLois Curfman McInnes Mat newmat; 2794aa3045dSJed Brown IS iscol_local; 28042a884f0SBarry Smith MPI_Comm comm_is,comm_mat; 281ca3fa75bSLois Curfman McInnes 282ca3fa75bSLois Curfman McInnes PetscFunctionBegin; 28342a884f0SBarry Smith ierr = PetscObjectGetComm((PetscObject)A,&comm_mat);CHKERRQ(ierr); 28442a884f0SBarry Smith ierr = PetscObjectGetComm((PetscObject)iscol,&comm_is);CHKERRQ(ierr); 28542a884f0SBarry Smith if (comm_mat != comm_is) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NOTSAMECOMM,"IS communicator must match matrix communicator"); 28642a884f0SBarry Smith 2874aa3045dSJed Brown ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 288ca3fa75bSLois Curfman McInnes ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr); 2894aa3045dSJed Brown ierr = ISGetIndices(iscol_local,&icol);CHKERRQ(ierr); 290b9b97703SBarry Smith ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr); 291b9b97703SBarry Smith ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr); 2924aa3045dSJed Brown ierr = ISGetSize(iscol,&Ncols);CHKERRQ(ierr); /* global number of columns, size of iscol_local */ 293ca3fa75bSLois Curfman McInnes 294ca3fa75bSLois Curfman McInnes /* No parallel redistribution currently supported! Should really check each index set 2957eba5e9cSLois Curfman McInnes to comfirm that it is OK. ... Currently supports only submatrix same partitioning as 2967eba5e9cSLois Curfman McInnes original matrix! */ 297ca3fa75bSLois Curfman McInnes 298ca3fa75bSLois Curfman McInnes ierr = MatGetLocalSize(A,&nlrows,&nlcols);CHKERRQ(ierr); 2997eba5e9cSLois Curfman McInnes ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr); 300ca3fa75bSLois Curfman McInnes 301ca3fa75bSLois Curfman McInnes /* Check submatrix call */ 302ca3fa75bSLois Curfman McInnes if (scall == MAT_REUSE_MATRIX) { 303e32f2f54SBarry Smith /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */ 3047eba5e9cSLois Curfman McInnes /* Really need to test rows and column sizes! */ 305ca3fa75bSLois Curfman McInnes newmat = *B; 306ca3fa75bSLois Curfman McInnes } else { 307ca3fa75bSLois Curfman McInnes /* Create and fill new matrix */ 308ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&newmat);CHKERRQ(ierr); 3094aa3045dSJed Brown ierr = MatSetSizes(newmat,nrows,ncols,PETSC_DECIDE,Ncols);CHKERRQ(ierr); 3107adad957SLisandro Dalcin ierr = MatSetType(newmat,((PetscObject)A)->type_name);CHKERRQ(ierr); 3110298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr); 312ca3fa75bSLois Curfman McInnes } 313ca3fa75bSLois Curfman McInnes 314ca3fa75bSLois Curfman McInnes /* Now extract the data pointers and do the copy, column at a time */ 315ca3fa75bSLois Curfman McInnes newmatd = (Mat_MPIDense*)newmat->data; 316637a0070SStefano Zampini ierr = MatDenseGetArray(newmatd->A,&bv);CHKERRQ(ierr); 317637a0070SStefano Zampini ierr = MatDenseGetArrayRead(mat->A,&v);CHKERRQ(ierr); 318637a0070SStefano Zampini ierr = MatDenseGetLDA(mat->A,&lda);CHKERRQ(ierr); 3194aa3045dSJed Brown for (i=0; i<Ncols; i++) { 320637a0070SStefano Zampini const PetscScalar *av = v + lda*icol[i]; 321ca3fa75bSLois Curfman McInnes for (j=0; j<nrows; j++) { 3227eba5e9cSLois Curfman McInnes *bv++ = av[irow[j] - rstart]; 323ca3fa75bSLois Curfman McInnes } 324ca3fa75bSLois Curfman McInnes } 325637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(mat->A,&v);CHKERRQ(ierr); 326637a0070SStefano Zampini ierr = MatDenseRestoreArray(newmatd->A,&bv);CHKERRQ(ierr); 327ca3fa75bSLois Curfman McInnes 328ca3fa75bSLois Curfman McInnes /* Assemble the matrices so that the correct flags are set */ 329ca3fa75bSLois Curfman McInnes ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 330ca3fa75bSLois Curfman McInnes ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 331ca3fa75bSLois Curfman McInnes 332ca3fa75bSLois Curfman McInnes /* Free work space */ 333ca3fa75bSLois Curfman McInnes ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr); 3345bdf786aSShri Abhyankar ierr = ISRestoreIndices(iscol_local,&icol);CHKERRQ(ierr); 33532bb1f2dSLisandro Dalcin ierr = ISDestroy(&iscol_local);CHKERRQ(ierr); 336ca3fa75bSLois Curfman McInnes *B = newmat; 337ca3fa75bSLois Curfman McInnes PetscFunctionReturn(0); 338ca3fa75bSLois Curfman McInnes } 339ca3fa75bSLois Curfman McInnes 340637a0070SStefano Zampini PetscErrorCode MatDenseRestoreArray_MPIDense(Mat A,PetscScalar **array) 341ff14e315SSatish Balay { 34273a71a0fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 34373a71a0fSBarry Smith PetscErrorCode ierr; 34473a71a0fSBarry Smith 3453a40ed3dSBarry Smith PetscFunctionBegin; 3468c778c55SBarry Smith ierr = MatDenseRestoreArray(a->A,array);CHKERRQ(ierr); 3473a40ed3dSBarry Smith PetscFunctionReturn(0); 348ff14e315SSatish Balay } 349ff14e315SSatish Balay 350637a0070SStefano Zampini PetscErrorCode MatDenseRestoreArrayRead_MPIDense(Mat A,const PetscScalar **array) 3518572280aSBarry Smith { 3528572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 3538572280aSBarry Smith PetscErrorCode ierr; 3548572280aSBarry Smith 3558572280aSBarry Smith PetscFunctionBegin; 3568572280aSBarry Smith ierr = MatDenseRestoreArrayRead(a->A,array);CHKERRQ(ierr); 3578572280aSBarry Smith PetscFunctionReturn(0); 3588572280aSBarry Smith } 3598572280aSBarry Smith 3606947451fSStefano Zampini PetscErrorCode MatDenseRestoreArrayWrite_MPIDense(Mat A,PetscScalar **array) 3616947451fSStefano Zampini { 3626947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 3636947451fSStefano Zampini PetscErrorCode ierr; 3646947451fSStefano Zampini 3656947451fSStefano Zampini PetscFunctionBegin; 3666947451fSStefano Zampini ierr = MatDenseRestoreArrayWrite(a->A,array);CHKERRQ(ierr); 3676947451fSStefano Zampini PetscFunctionReturn(0); 3686947451fSStefano Zampini } 3696947451fSStefano Zampini 370dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode) 3718965ea79SLois Curfman McInnes { 37239ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 373dfbe8321SBarry Smith PetscErrorCode ierr; 37413f74950SBarry Smith PetscInt nstash,reallocs; 3758965ea79SLois Curfman McInnes 3763a40ed3dSBarry Smith PetscFunctionBegin; 3774067683fSStefano Zampini if (mdn->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 3788965ea79SLois Curfman McInnes 379d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 3808798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 381ae15b995SBarry Smith ierr = PetscInfo2(mdn->A,"Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 3823a40ed3dSBarry Smith PetscFunctionReturn(0); 3838965ea79SLois Curfman McInnes } 3848965ea79SLois Curfman McInnes 385dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode) 3868965ea79SLois Curfman McInnes { 38739ddd567SLois Curfman McInnes Mat_MPIDense *mdn=(Mat_MPIDense*)mat->data; 3886849ba73SBarry Smith PetscErrorCode ierr; 38913f74950SBarry Smith PetscInt i,*row,*col,flg,j,rstart,ncols; 39013f74950SBarry Smith PetscMPIInt n; 39187828ca2SBarry Smith PetscScalar *val; 3928965ea79SLois Curfman McInnes 3933a40ed3dSBarry Smith PetscFunctionBegin; 394910cf402Sprj- if (!mdn->donotstash && !mat->nooffprocentries) { 3958965ea79SLois Curfman McInnes /* wait on receives */ 3967ef1d9bdSSatish Balay while (1) { 3978798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 3987ef1d9bdSSatish Balay if (!flg) break; 3998965ea79SLois Curfman McInnes 4007ef1d9bdSSatish Balay for (i=0; i<n;) { 4017ef1d9bdSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 4022205254eSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 4032205254eSKarl Rupp if (row[j] != rstart) break; 4042205254eSKarl Rupp } 4057ef1d9bdSSatish Balay if (j < n) ncols = j-i; 4067ef1d9bdSSatish Balay else ncols = n-i; 4077ef1d9bdSSatish Balay /* Now assemble all these values with a single function call */ 4084b4eb8d3SJed Brown ierr = MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr); 4097ef1d9bdSSatish Balay i = j; 4108965ea79SLois Curfman McInnes } 4117ef1d9bdSSatish Balay } 4128798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 413910cf402Sprj- } 4148965ea79SLois Curfman McInnes 41539ddd567SLois Curfman McInnes ierr = MatAssemblyBegin(mdn->A,mode);CHKERRQ(ierr); 41639ddd567SLois Curfman McInnes ierr = MatAssemblyEnd(mdn->A,mode);CHKERRQ(ierr); 4178965ea79SLois Curfman McInnes 4186d4a8577SBarry Smith if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 41939ddd567SLois Curfman McInnes ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 4208965ea79SLois Curfman McInnes } 4213a40ed3dSBarry Smith PetscFunctionReturn(0); 4228965ea79SLois Curfman McInnes } 4238965ea79SLois Curfman McInnes 424dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIDense(Mat A) 4258965ea79SLois Curfman McInnes { 426dfbe8321SBarry Smith PetscErrorCode ierr; 42739ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 4283a40ed3dSBarry Smith 4293a40ed3dSBarry Smith PetscFunctionBegin; 4303a40ed3dSBarry Smith ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 4313a40ed3dSBarry Smith PetscFunctionReturn(0); 4328965ea79SLois Curfman McInnes } 4338965ea79SLois Curfman McInnes 434637a0070SStefano Zampini PetscErrorCode MatZeroRows_MPIDense(Mat A,PetscInt n,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 4358965ea79SLois Curfman McInnes { 43639ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 4376849ba73SBarry Smith PetscErrorCode ierr; 438637a0070SStefano Zampini PetscInt i,len,*lrows; 439637a0070SStefano Zampini 440637a0070SStefano Zampini PetscFunctionBegin; 441637a0070SStefano Zampini /* get locally owned rows */ 442637a0070SStefano Zampini ierr = PetscLayoutMapLocal(A->rmap,n,rows,&len,&lrows,NULL);CHKERRQ(ierr); 443637a0070SStefano Zampini /* fix right hand side if needed */ 444637a0070SStefano Zampini if (x && b) { 44597b48c8fSBarry Smith const PetscScalar *xx; 44697b48c8fSBarry Smith PetscScalar *bb; 4478965ea79SLois Curfman McInnes 44897b48c8fSBarry Smith ierr = VecGetArrayRead(x, &xx);CHKERRQ(ierr); 449637a0070SStefano Zampini ierr = VecGetArrayWrite(b, &bb);CHKERRQ(ierr); 450637a0070SStefano Zampini for (i=0;i<len;++i) bb[lrows[i]] = diag*xx[lrows[i]]; 45197b48c8fSBarry Smith ierr = VecRestoreArrayRead(x, &xx);CHKERRQ(ierr); 452637a0070SStefano Zampini ierr = VecRestoreArrayWrite(b, &bb);CHKERRQ(ierr); 45397b48c8fSBarry Smith } 454637a0070SStefano Zampini ierr = MatZeroRows(l->A,len,lrows,0.0,NULL,NULL);CHKERRQ(ierr); 455e2eb51b1SBarry Smith if (diag != 0.0) { 456637a0070SStefano Zampini Vec d; 457b9679d65SBarry Smith 458637a0070SStefano Zampini ierr = MatCreateVecs(A,NULL,&d);CHKERRQ(ierr); 459637a0070SStefano Zampini ierr = VecSet(d,diag);CHKERRQ(ierr); 460637a0070SStefano Zampini ierr = MatDiagonalSet(A,d,INSERT_VALUES);CHKERRQ(ierr); 461637a0070SStefano Zampini ierr = VecDestroy(&d);CHKERRQ(ierr); 462b9679d65SBarry Smith } 463606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 4643a40ed3dSBarry Smith PetscFunctionReturn(0); 4658965ea79SLois Curfman McInnes } 4668965ea79SLois Curfman McInnes 467cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMult_SeqDense(Mat,Vec,Vec); 468cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultAdd_SeqDense(Mat,Vec,Vec,Vec); 469cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTranspose_SeqDense(Mat,Vec,Vec); 470cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTransposeAdd_SeqDense(Mat,Vec,Vec,Vec); 471cc2e6a90SBarry Smith 472dfbe8321SBarry Smith PetscErrorCode MatMult_MPIDense(Mat mat,Vec xx,Vec yy) 4738965ea79SLois Curfman McInnes { 47439ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 475dfbe8321SBarry Smith PetscErrorCode ierr; 476637a0070SStefano Zampini const PetscScalar *ax; 477637a0070SStefano Zampini PetscScalar *ay; 478d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 479c456f294SBarry Smith 4803a40ed3dSBarry Smith PetscFunctionBegin; 481a256111fSJunchao Zhang ierr = VecGetArrayReadAndMemType(xx,&ax,&axmtype);CHKERRQ(ierr); 482a256111fSJunchao Zhang ierr = VecGetArrayAndMemType(mdn->lvec,&ay,&aymtype);CHKERRQ(ierr); 483d0295fc0SJunchao Zhang ierr = PetscSFBcastWithMemTypeBegin(mdn->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay);CHKERRQ(ierr); 484637a0070SStefano Zampini ierr = PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ax,ay);CHKERRQ(ierr); 485a256111fSJunchao Zhang ierr = VecRestoreArrayAndMemType(mdn->lvec,&ay);CHKERRQ(ierr); 486a256111fSJunchao Zhang ierr = VecRestoreArrayReadAndMemType(xx,&ax);CHKERRQ(ierr); 487637a0070SStefano Zampini ierr = (*mdn->A->ops->mult)(mdn->A,mdn->lvec,yy);CHKERRQ(ierr); 4883a40ed3dSBarry Smith PetscFunctionReturn(0); 4898965ea79SLois Curfman McInnes } 4908965ea79SLois Curfman McInnes 491dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz) 4928965ea79SLois Curfman McInnes { 49339ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 494dfbe8321SBarry Smith PetscErrorCode ierr; 495637a0070SStefano Zampini const PetscScalar *ax; 496637a0070SStefano Zampini PetscScalar *ay; 497d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 498c456f294SBarry Smith 4993a40ed3dSBarry Smith PetscFunctionBegin; 500a256111fSJunchao Zhang ierr = VecGetArrayReadAndMemType(xx,&ax,&axmtype);CHKERRQ(ierr); 501a256111fSJunchao Zhang ierr = VecGetArrayAndMemType(mdn->lvec,&ay,&aymtype);CHKERRQ(ierr); 502d0295fc0SJunchao Zhang ierr = PetscSFBcastWithMemTypeBegin(mdn->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay);CHKERRQ(ierr); 503637a0070SStefano Zampini ierr = PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ax,ay);CHKERRQ(ierr); 504a256111fSJunchao Zhang ierr = VecRestoreArrayAndMemType(mdn->lvec,&ay);CHKERRQ(ierr); 505a256111fSJunchao Zhang ierr = VecRestoreArrayReadAndMemType(xx,&ax);CHKERRQ(ierr); 506637a0070SStefano Zampini ierr = (*mdn->A->ops->multadd)(mdn->A,mdn->lvec,yy,zz);CHKERRQ(ierr); 5073a40ed3dSBarry Smith PetscFunctionReturn(0); 5088965ea79SLois Curfman McInnes } 5098965ea79SLois Curfman McInnes 510dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIDense(Mat A,Vec xx,Vec yy) 511096963f5SLois Curfman McInnes { 512096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 513dfbe8321SBarry Smith PetscErrorCode ierr; 514637a0070SStefano Zampini const PetscScalar *ax; 515637a0070SStefano Zampini PetscScalar *ay; 516d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 517096963f5SLois Curfman McInnes 5183a40ed3dSBarry Smith PetscFunctionBegin; 519637a0070SStefano Zampini ierr = VecSet(yy,0.0);CHKERRQ(ierr); 520637a0070SStefano Zampini ierr = (*a->A->ops->multtranspose)(a->A,xx,a->lvec);CHKERRQ(ierr); 521a256111fSJunchao Zhang ierr = VecGetArrayReadAndMemType(a->lvec,&ax,&axmtype);CHKERRQ(ierr); 522a256111fSJunchao Zhang ierr = VecGetArrayAndMemType(yy,&ay,&aymtype);CHKERRQ(ierr); 523d0295fc0SJunchao Zhang ierr = PetscSFReduceWithMemTypeBegin(a->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPIU_SUM);CHKERRQ(ierr); 524637a0070SStefano Zampini ierr = PetscSFReduceEnd(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM);CHKERRQ(ierr); 525a256111fSJunchao Zhang ierr = VecRestoreArrayReadAndMemType(a->lvec,&ax);CHKERRQ(ierr); 526a256111fSJunchao Zhang ierr = VecRestoreArrayAndMemType(yy,&ay);CHKERRQ(ierr); 5273a40ed3dSBarry Smith PetscFunctionReturn(0); 528096963f5SLois Curfman McInnes } 529096963f5SLois Curfman McInnes 530dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz) 531096963f5SLois Curfman McInnes { 532096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 533dfbe8321SBarry Smith PetscErrorCode ierr; 534637a0070SStefano Zampini const PetscScalar *ax; 535637a0070SStefano Zampini PetscScalar *ay; 536d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 537096963f5SLois Curfman McInnes 5383a40ed3dSBarry Smith PetscFunctionBegin; 5393501a2bdSLois Curfman McInnes ierr = VecCopy(yy,zz);CHKERRQ(ierr); 540637a0070SStefano Zampini ierr = (*a->A->ops->multtranspose)(a->A,xx,a->lvec);CHKERRQ(ierr); 541a256111fSJunchao Zhang ierr = VecGetArrayReadAndMemType(a->lvec,&ax,&axmtype);CHKERRQ(ierr); 542a256111fSJunchao Zhang ierr = VecGetArrayAndMemType(zz,&ay,&aymtype);CHKERRQ(ierr); 543d0295fc0SJunchao Zhang ierr = PetscSFReduceWithMemTypeBegin(a->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPIU_SUM);CHKERRQ(ierr); 544637a0070SStefano Zampini ierr = PetscSFReduceEnd(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM);CHKERRQ(ierr); 545a256111fSJunchao Zhang ierr = VecRestoreArrayReadAndMemType(a->lvec,&ax);CHKERRQ(ierr); 546a256111fSJunchao Zhang ierr = VecRestoreArrayAndMemType(zz,&ay);CHKERRQ(ierr); 5473a40ed3dSBarry Smith PetscFunctionReturn(0); 548096963f5SLois Curfman McInnes } 549096963f5SLois Curfman McInnes 550dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIDense(Mat A,Vec v) 5518965ea79SLois Curfman McInnes { 55239ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 553dfbe8321SBarry Smith PetscErrorCode ierr; 554637a0070SStefano Zampini PetscInt lda,len,i,n,m = A->rmap->n,radd; 55587828ca2SBarry Smith PetscScalar *x,zero = 0.0; 556637a0070SStefano Zampini const PetscScalar *av; 557ed3cc1f0SBarry Smith 5583a40ed3dSBarry Smith PetscFunctionBegin; 5592dcb1b2aSMatthew Knepley ierr = VecSet(v,zero);CHKERRQ(ierr); 5601ebc52fbSHong Zhang ierr = VecGetArray(v,&x);CHKERRQ(ierr); 561096963f5SLois Curfman McInnes ierr = VecGetSize(v,&n);CHKERRQ(ierr); 562e32f2f54SBarry Smith if (n != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec"); 563d0f46423SBarry Smith len = PetscMin(a->A->rmap->n,a->A->cmap->n); 564d0f46423SBarry Smith radd = A->rmap->rstart*m; 565637a0070SStefano Zampini ierr = MatDenseGetArrayRead(a->A,&av);CHKERRQ(ierr); 566637a0070SStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 56744cd7ae7SLois Curfman McInnes for (i=0; i<len; i++) { 568637a0070SStefano Zampini x[i] = av[radd + i*lda + i]; 569096963f5SLois Curfman McInnes } 570637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(a->A,&av);CHKERRQ(ierr); 5711ebc52fbSHong Zhang ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 5723a40ed3dSBarry Smith PetscFunctionReturn(0); 5738965ea79SLois Curfman McInnes } 5748965ea79SLois Curfman McInnes 575dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIDense(Mat mat) 5768965ea79SLois Curfman McInnes { 5773501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 578dfbe8321SBarry Smith PetscErrorCode ierr; 579ed3cc1f0SBarry Smith 5803a40ed3dSBarry Smith PetscFunctionBegin; 581aa482453SBarry Smith #if defined(PETSC_USE_LOG) 582d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D, Cols=%D",mat->rmap->N,mat->cmap->N); 5838965ea79SLois Curfman McInnes #endif 5848798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 585616b8fbbSStefano Zampini if (mdn->vecinuse) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 586616b8fbbSStefano Zampini if (mdn->matinuse) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 5876bf464f9SBarry Smith ierr = MatDestroy(&mdn->A);CHKERRQ(ierr); 5886bf464f9SBarry Smith ierr = VecDestroy(&mdn->lvec);CHKERRQ(ierr); 589637a0070SStefano Zampini ierr = PetscSFDestroy(&mdn->Mvctx);CHKERRQ(ierr); 5906947451fSStefano Zampini ierr = VecDestroy(&mdn->cvec);CHKERRQ(ierr); 5915ea7661aSPierre Jolivet ierr = MatDestroy(&mdn->cmat);CHKERRQ(ierr); 59201b82886SBarry Smith 593bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 594f4259b30SLisandro Dalcin ierr = PetscObjectChangeTypeName((PetscObject)mat,NULL);CHKERRQ(ierr); 5958baccfbdSHong Zhang 59649a6ff4bSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",NULL);CHKERRQ(ierr); 597ad16ce7aSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseSetLDA_C",NULL);CHKERRQ(ierr); 5988baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",NULL);CHKERRQ(ierr); 5998572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",NULL);CHKERRQ(ierr); 6008572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",NULL);CHKERRQ(ierr); 6018572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",NULL);CHKERRQ(ierr); 6026947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayWrite_C",NULL);CHKERRQ(ierr); 6036947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayWrite_C",NULL);CHKERRQ(ierr); 604d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",NULL);CHKERRQ(ierr); 605d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",NULL);CHKERRQ(ierr); 606d5ea218eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseReplaceArray_C",NULL);CHKERRQ(ierr); 6078baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 6088baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",NULL);CHKERRQ(ierr); 6098baccfbdSHong Zhang #endif 610d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 611d24d4204SJose E. Roman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_scalapack_C",NULL);CHKERRQ(ierr); 612d24d4204SJose E. Roman #endif 613bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",NULL);CHKERRQ(ierr); 6144222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 6154222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaij_C",NULL);CHKERRQ(ierr); 6166718818eSStefano Zampini #if defined (PETSC_HAVE_CUDA) 6176718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaijcusparse_mpidense_C",NULL);CHKERRQ(ierr); 6186718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaijcusparse_C",NULL);CHKERRQ(ierr); 6196718818eSStefano Zampini #endif 62086aefd0dSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",NULL);CHKERRQ(ierr); 62186aefd0dSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",NULL);CHKERRQ(ierr); 6226947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",NULL);CHKERRQ(ierr); 6236947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",NULL);CHKERRQ(ierr); 6246947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",NULL);CHKERRQ(ierr); 6256947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",NULL);CHKERRQ(ierr); 6266947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",NULL);CHKERRQ(ierr); 6276947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",NULL);CHKERRQ(ierr); 6285ea7661aSPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetSubMatrix_C",NULL);CHKERRQ(ierr); 6295ea7661aSPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreSubMatrix_C",NULL);CHKERRQ(ierr); 6303a40ed3dSBarry Smith PetscFunctionReturn(0); 6318965ea79SLois Curfman McInnes } 63239ddd567SLois Curfman McInnes 63352c5f739Sprj- PETSC_INTERN PetscErrorCode MatView_SeqDense(Mat,PetscViewer); 63452c5f739Sprj- 6359804daf3SBarry Smith #include <petscdraw.h> 6366849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 6378965ea79SLois Curfman McInnes { 63839ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 639dfbe8321SBarry Smith PetscErrorCode ierr; 640616b8fbbSStefano Zampini PetscMPIInt rank; 64119fd82e9SBarry Smith PetscViewerType vtype; 642ace3abfcSBarry Smith PetscBool iascii,isdraw; 643b0a32e0cSBarry Smith PetscViewer sviewer; 644f3ef73ceSBarry Smith PetscViewerFormat format; 6458965ea79SLois Curfman McInnes 6463a40ed3dSBarry Smith PetscFunctionBegin; 647ffc4695bSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRMPI(ierr); 648251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 649251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 65032077d6dSBarry Smith if (iascii) { 651b0a32e0cSBarry Smith ierr = PetscViewerGetType(viewer,&vtype);CHKERRQ(ierr); 652b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 653456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 6544e220ebcSLois Curfman McInnes MatInfo info; 655888f2ed8SSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 6561575c14dSBarry Smith ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr); 6577b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer," [%d] local rows %D nz %D nz alloced %D mem %D \n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory);CHKERRQ(ierr); 658b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 6591575c14dSBarry Smith ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr); 660637a0070SStefano Zampini ierr = PetscSFView(mdn->Mvctx,viewer);CHKERRQ(ierr); 6613a40ed3dSBarry Smith PetscFunctionReturn(0); 662fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 6633a40ed3dSBarry Smith PetscFunctionReturn(0); 6648965ea79SLois Curfman McInnes } 665f1af5d2fSBarry Smith } else if (isdraw) { 666b0a32e0cSBarry Smith PetscDraw draw; 667ace3abfcSBarry Smith PetscBool isnull; 668f1af5d2fSBarry Smith 669b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 670b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 671f1af5d2fSBarry Smith if (isnull) PetscFunctionReturn(0); 672f1af5d2fSBarry Smith } 67377ed5343SBarry Smith 6747da1fb6eSBarry Smith { 6758965ea79SLois Curfman McInnes /* assemble the entire matrix onto first processor. */ 6768965ea79SLois Curfman McInnes Mat A; 677d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,m,row,i,nz; 678ba8c8a56SBarry Smith PetscInt *cols; 679ba8c8a56SBarry Smith PetscScalar *vals; 6808965ea79SLois Curfman McInnes 681ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr); 6828965ea79SLois Curfman McInnes if (!rank) { 683f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 6843a40ed3dSBarry Smith } else { 685f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 6868965ea79SLois Curfman McInnes } 6877adad957SLisandro Dalcin /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */ 688878740d9SKris Buschelman ierr = MatSetType(A,MATMPIDENSE);CHKERRQ(ierr); 6890298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(A,NULL);CHKERRQ(ierr); 6903bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr); 6918965ea79SLois Curfman McInnes 69239ddd567SLois Curfman McInnes /* Copy the matrix ... This isn't the most efficient means, 69339ddd567SLois Curfman McInnes but it's quick for now */ 69451022da4SBarry Smith A->insertmode = INSERT_VALUES; 6952205254eSKarl Rupp 6962205254eSKarl Rupp row = mat->rmap->rstart; 6972205254eSKarl Rupp m = mdn->A->rmap->n; 6988965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 699ba8c8a56SBarry Smith ierr = MatGetRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 700ba8c8a56SBarry Smith ierr = MatSetValues_MPIDense(A,1,&row,nz,cols,vals,INSERT_VALUES);CHKERRQ(ierr); 701ba8c8a56SBarry Smith ierr = MatRestoreRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 70239ddd567SLois Curfman McInnes row++; 7038965ea79SLois Curfman McInnes } 7048965ea79SLois Curfman McInnes 7056d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 7066d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 7073f08860eSBarry Smith ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 708b9b97703SBarry Smith if (!rank) { 7091a9d3c3cSBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPIDense*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr); 7107da1fb6eSBarry Smith ierr = MatView_SeqDense(((Mat_MPIDense*)(A->data))->A,sviewer);CHKERRQ(ierr); 7118965ea79SLois Curfman McInnes } 7123f08860eSBarry Smith ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 713b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 7146bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 7158965ea79SLois Curfman McInnes } 7163a40ed3dSBarry Smith PetscFunctionReturn(0); 7178965ea79SLois Curfman McInnes } 7188965ea79SLois Curfman McInnes 719dfbe8321SBarry Smith PetscErrorCode MatView_MPIDense(Mat mat,PetscViewer viewer) 7208965ea79SLois Curfman McInnes { 721dfbe8321SBarry Smith PetscErrorCode ierr; 722ace3abfcSBarry Smith PetscBool iascii,isbinary,isdraw,issocket; 7238965ea79SLois Curfman McInnes 724433994e6SBarry Smith PetscFunctionBegin; 725251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 726251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 727251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 728251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 7290f5bd95cSBarry Smith 73032077d6dSBarry Smith if (iascii || issocket || isdraw) { 731f1af5d2fSBarry Smith ierr = MatView_MPIDense_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 7320f5bd95cSBarry Smith } else if (isbinary) { 7338491ab44SLisandro Dalcin ierr = MatView_Dense_Binary(mat,viewer);CHKERRQ(ierr); 73411aeaf0aSBarry Smith } 7353a40ed3dSBarry Smith PetscFunctionReturn(0); 7368965ea79SLois Curfman McInnes } 7378965ea79SLois Curfman McInnes 738dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info) 7398965ea79SLois Curfman McInnes { 7403501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 7413501a2bdSLois Curfman McInnes Mat mdn = mat->A; 742dfbe8321SBarry Smith PetscErrorCode ierr; 7433966268fSBarry Smith PetscLogDouble isend[5],irecv[5]; 7448965ea79SLois Curfman McInnes 7453a40ed3dSBarry Smith PetscFunctionBegin; 7464e220ebcSLois Curfman McInnes info->block_size = 1.0; 7472205254eSKarl Rupp 7484e220ebcSLois Curfman McInnes ierr = MatGetInfo(mdn,MAT_LOCAL,info);CHKERRQ(ierr); 7492205254eSKarl Rupp 7504e220ebcSLois Curfman McInnes isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 7514e220ebcSLois Curfman McInnes isend[3] = info->memory; isend[4] = info->mallocs; 7528965ea79SLois Curfman McInnes if (flag == MAT_LOCAL) { 7534e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 7544e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 7554e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 7564e220ebcSLois Curfman McInnes info->memory = isend[3]; 7574e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 7588965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 7593966268fSBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 7602205254eSKarl Rupp 7614e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7624e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7634e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7644e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7654e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7668965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 7673966268fSBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 7682205254eSKarl Rupp 7694e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7704e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7714e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7724e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7734e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7748965ea79SLois Curfman McInnes } 7754e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 7764e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 7774e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 7783a40ed3dSBarry Smith PetscFunctionReturn(0); 7798965ea79SLois Curfman McInnes } 7808965ea79SLois Curfman McInnes 781ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIDense(Mat A,MatOption op,PetscBool flg) 7828965ea79SLois Curfman McInnes { 78339ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 784dfbe8321SBarry Smith PetscErrorCode ierr; 7858965ea79SLois Curfman McInnes 7863a40ed3dSBarry Smith PetscFunctionBegin; 78712c028f9SKris Buschelman switch (op) { 788512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 78912c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 79012c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 79143674050SBarry Smith MatCheckPreallocated(A,1); 7924e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 79312c028f9SKris Buschelman break; 79412c028f9SKris Buschelman case MAT_ROW_ORIENTED: 79543674050SBarry Smith MatCheckPreallocated(A,1); 7964e0d8c25SBarry Smith a->roworiented = flg; 7974e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 79812c028f9SKris Buschelman break; 7998c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 80013fa8e87SLisandro Dalcin case MAT_KEEP_NONZERO_PATTERN: 80112c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 802071fcb05SBarry Smith case MAT_SORTED_FULL: 803290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 80412c028f9SKris Buschelman break; 80512c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 8064e0d8c25SBarry Smith a->donotstash = flg; 80712c028f9SKris Buschelman break; 80877e54ba9SKris Buschelman case MAT_SYMMETRIC: 80977e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 8109a4540c5SBarry Smith case MAT_HERMITIAN: 8119a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 812600fe468SBarry Smith case MAT_IGNORE_LOWER_TRIANGULAR: 8135d7aebe8SStefano Zampini case MAT_IGNORE_ZERO_ENTRIES: 814290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 81577e54ba9SKris Buschelman break; 81612c028f9SKris Buschelman default: 817e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %s",MatOptions[op]); 8183a40ed3dSBarry Smith } 8193a40ed3dSBarry Smith PetscFunctionReturn(0); 8208965ea79SLois Curfman McInnes } 8218965ea79SLois Curfman McInnes 822dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIDense(Mat A,Vec ll,Vec rr) 8235b2fa520SLois Curfman McInnes { 8245b2fa520SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 825637a0070SStefano Zampini const PetscScalar *l; 826637a0070SStefano Zampini PetscScalar x,*v,*vv,*r; 827dfbe8321SBarry Smith PetscErrorCode ierr; 828637a0070SStefano Zampini PetscInt i,j,s2a,s3a,s2,s3,m=mdn->A->rmap->n,n=mdn->A->cmap->n,lda; 8295b2fa520SLois Curfman McInnes 8305b2fa520SLois Curfman McInnes PetscFunctionBegin; 831637a0070SStefano Zampini ierr = MatDenseGetArray(mdn->A,&vv);CHKERRQ(ierr); 832637a0070SStefano Zampini ierr = MatDenseGetLDA(mdn->A,&lda);CHKERRQ(ierr); 83372d926a5SLois Curfman McInnes ierr = MatGetLocalSize(A,&s2,&s3);CHKERRQ(ierr); 8345b2fa520SLois Curfman McInnes if (ll) { 83572d926a5SLois Curfman McInnes ierr = VecGetLocalSize(ll,&s2a);CHKERRQ(ierr); 836637a0070SStefano Zampini if (s2a != s2) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vector non-conforming local size, %D != %D", s2a, s2); 837bca11509SBarry Smith ierr = VecGetArrayRead(ll,&l);CHKERRQ(ierr); 8385b2fa520SLois Curfman McInnes for (i=0; i<m; i++) { 8395b2fa520SLois Curfman McInnes x = l[i]; 840637a0070SStefano Zampini v = vv + i; 841637a0070SStefano Zampini for (j=0; j<n; j++) { (*v) *= x; v+= lda;} 8425b2fa520SLois Curfman McInnes } 843bca11509SBarry Smith ierr = VecRestoreArrayRead(ll,&l);CHKERRQ(ierr); 844637a0070SStefano Zampini ierr = PetscLogFlops(1.0*n*m);CHKERRQ(ierr); 8455b2fa520SLois Curfman McInnes } 8465b2fa520SLois Curfman McInnes if (rr) { 847637a0070SStefano Zampini const PetscScalar *ar; 848637a0070SStefano Zampini 849175be7b4SMatthew Knepley ierr = VecGetLocalSize(rr,&s3a);CHKERRQ(ierr); 850e32f2f54SBarry Smith if (s3a != s3) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vec non-conforming local size, %d != %d.", s3a, s3); 851637a0070SStefano Zampini ierr = VecGetArrayRead(rr,&ar);CHKERRQ(ierr); 852637a0070SStefano Zampini ierr = VecGetArray(mdn->lvec,&r);CHKERRQ(ierr); 853637a0070SStefano Zampini ierr = PetscSFBcastBegin(mdn->Mvctx,MPIU_SCALAR,ar,r);CHKERRQ(ierr); 854637a0070SStefano Zampini ierr = PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ar,r);CHKERRQ(ierr); 855637a0070SStefano Zampini ierr = VecRestoreArrayRead(rr,&ar);CHKERRQ(ierr); 8565b2fa520SLois Curfman McInnes for (i=0; i<n; i++) { 8575b2fa520SLois Curfman McInnes x = r[i]; 858637a0070SStefano Zampini v = vv + i*lda; 8592205254eSKarl Rupp for (j=0; j<m; j++) (*v++) *= x; 8605b2fa520SLois Curfman McInnes } 861637a0070SStefano Zampini ierr = VecRestoreArray(mdn->lvec,&r);CHKERRQ(ierr); 862637a0070SStefano Zampini ierr = PetscLogFlops(1.0*n*m);CHKERRQ(ierr); 8635b2fa520SLois Curfman McInnes } 864637a0070SStefano Zampini ierr = MatDenseRestoreArray(mdn->A,&vv);CHKERRQ(ierr); 8655b2fa520SLois Curfman McInnes PetscFunctionReturn(0); 8665b2fa520SLois Curfman McInnes } 8675b2fa520SLois Curfman McInnes 868dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIDense(Mat A,NormType type,PetscReal *nrm) 869096963f5SLois Curfman McInnes { 8703501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 871dfbe8321SBarry Smith PetscErrorCode ierr; 87213f74950SBarry Smith PetscInt i,j; 873616b8fbbSStefano Zampini PetscMPIInt size; 874329f5518SBarry Smith PetscReal sum = 0.0; 875637a0070SStefano Zampini const PetscScalar *av,*v; 8763501a2bdSLois Curfman McInnes 8773a40ed3dSBarry Smith PetscFunctionBegin; 878637a0070SStefano Zampini ierr = MatDenseGetArrayRead(mdn->A,&av);CHKERRQ(ierr); 879637a0070SStefano Zampini v = av; 880ffc4695bSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRMPI(ierr); 881616b8fbbSStefano Zampini if (size == 1) { 882064f8208SBarry Smith ierr = MatNorm(mdn->A,type,nrm);CHKERRQ(ierr); 8833501a2bdSLois Curfman McInnes } else { 8843501a2bdSLois Curfman McInnes if (type == NORM_FROBENIUS) { 885d0f46423SBarry Smith for (i=0; i<mdn->A->cmap->n*mdn->A->rmap->n; i++) { 886329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 8873501a2bdSLois Curfman McInnes } 888b2566f29SBarry Smith ierr = MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 8898f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 890dc0b31edSSatish Balay ierr = PetscLogFlops(2.0*mdn->A->cmap->n*mdn->A->rmap->n);CHKERRQ(ierr); 8913a40ed3dSBarry Smith } else if (type == NORM_1) { 892329f5518SBarry Smith PetscReal *tmp,*tmp2; 893580bdb30SBarry Smith ierr = PetscCalloc2(A->cmap->N,&tmp,A->cmap->N,&tmp2);CHKERRQ(ierr); 894064f8208SBarry Smith *nrm = 0.0; 895637a0070SStefano Zampini v = av; 896d0f46423SBarry Smith for (j=0; j<mdn->A->cmap->n; j++) { 897d0f46423SBarry Smith for (i=0; i<mdn->A->rmap->n; i++) { 89867e560aaSBarry Smith tmp[j] += PetscAbsScalar(*v); v++; 8993501a2bdSLois Curfman McInnes } 9003501a2bdSLois Curfman McInnes } 901b2566f29SBarry Smith ierr = MPIU_Allreduce(tmp,tmp2,A->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 902d0f46423SBarry Smith for (j=0; j<A->cmap->N; j++) { 903064f8208SBarry Smith if (tmp2[j] > *nrm) *nrm = tmp2[j]; 9043501a2bdSLois Curfman McInnes } 9058627564fSBarry Smith ierr = PetscFree2(tmp,tmp2);CHKERRQ(ierr); 906d0f46423SBarry Smith ierr = PetscLogFlops(A->cmap->n*A->rmap->n);CHKERRQ(ierr); 9073a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 908329f5518SBarry Smith PetscReal ntemp; 9093501a2bdSLois Curfman McInnes ierr = MatNorm(mdn->A,type,&ntemp);CHKERRQ(ierr); 910b2566f29SBarry Smith ierr = MPIU_Allreduce(&ntemp,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 911ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"No support for two norm"); 9123501a2bdSLois Curfman McInnes } 913637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(mdn->A,&av);CHKERRQ(ierr); 9143a40ed3dSBarry Smith PetscFunctionReturn(0); 9153501a2bdSLois Curfman McInnes } 9163501a2bdSLois Curfman McInnes 917fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIDense(Mat A,MatReuse reuse,Mat *matout) 9183501a2bdSLois Curfman McInnes { 9193501a2bdSLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 9203501a2bdSLois Curfman McInnes Mat B; 921d0f46423SBarry Smith PetscInt M = A->rmap->N,N = A->cmap->N,m,n,*rwork,rstart = A->rmap->rstart; 9226849ba73SBarry Smith PetscErrorCode ierr; 923637a0070SStefano Zampini PetscInt j,i,lda; 92487828ca2SBarry Smith PetscScalar *v; 9253501a2bdSLois Curfman McInnes 9263a40ed3dSBarry Smith PetscFunctionBegin; 927cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 928ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 929d0f46423SBarry Smith ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr); 9307adad957SLisandro Dalcin ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr); 9310298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(B,NULL);CHKERRQ(ierr); 932637a0070SStefano Zampini } else B = *matout; 9333501a2bdSLois Curfman McInnes 934637a0070SStefano Zampini m = a->A->rmap->n; n = a->A->cmap->n; 935637a0070SStefano Zampini ierr = MatDenseGetArrayRead(a->A,(const PetscScalar**)&v);CHKERRQ(ierr); 936637a0070SStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 937785e854fSJed Brown ierr = PetscMalloc1(m,&rwork);CHKERRQ(ierr); 9383501a2bdSLois Curfman McInnes for (i=0; i<m; i++) rwork[i] = rstart + i; 9391acff37aSSatish Balay for (j=0; j<n; j++) { 9403501a2bdSLois Curfman McInnes ierr = MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES);CHKERRQ(ierr); 941637a0070SStefano Zampini v += lda; 9423501a2bdSLois Curfman McInnes } 943637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(a->A,(const PetscScalar**)&v);CHKERRQ(ierr); 944606d414cSSatish Balay ierr = PetscFree(rwork);CHKERRQ(ierr); 9456d4a8577SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 9466d4a8577SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 947cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) { 9483501a2bdSLois Curfman McInnes *matout = B; 9493501a2bdSLois Curfman McInnes } else { 95028be2f97SBarry Smith ierr = MatHeaderMerge(A,&B);CHKERRQ(ierr); 9513501a2bdSLois Curfman McInnes } 9523a40ed3dSBarry Smith PetscFunctionReturn(0); 953096963f5SLois Curfman McInnes } 954096963f5SLois Curfman McInnes 9556849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat*); 95652c5f739Sprj- PETSC_INTERN PetscErrorCode MatScale_MPIDense(Mat,PetscScalar); 9578965ea79SLois Curfman McInnes 9584994cf47SJed Brown PetscErrorCode MatSetUp_MPIDense(Mat A) 959273d9f13SBarry Smith { 960dfbe8321SBarry Smith PetscErrorCode ierr; 961273d9f13SBarry Smith 962273d9f13SBarry Smith PetscFunctionBegin; 96318992e5dSStefano Zampini ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr); 96418992e5dSStefano Zampini ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr); 96518992e5dSStefano Zampini if (!A->preallocated) { 966f4259b30SLisandro Dalcin ierr = MatMPIDenseSetPreallocation(A,NULL);CHKERRQ(ierr); 96718992e5dSStefano Zampini } 968273d9f13SBarry Smith PetscFunctionReturn(0); 969273d9f13SBarry Smith } 970273d9f13SBarry Smith 971488007eeSBarry Smith PetscErrorCode MatAXPY_MPIDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str) 972488007eeSBarry Smith { 973488007eeSBarry Smith PetscErrorCode ierr; 974488007eeSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)Y->data, *B = (Mat_MPIDense*)X->data; 975488007eeSBarry Smith 976488007eeSBarry Smith PetscFunctionBegin; 977488007eeSBarry Smith ierr = MatAXPY(A->A,alpha,B->A,str);CHKERRQ(ierr); 978488007eeSBarry Smith PetscFunctionReturn(0); 979488007eeSBarry Smith } 980488007eeSBarry Smith 9817087cfbeSBarry Smith PetscErrorCode MatConjugate_MPIDense(Mat mat) 982ba337c44SJed Brown { 983ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)mat->data; 984ba337c44SJed Brown PetscErrorCode ierr; 985ba337c44SJed Brown 986ba337c44SJed Brown PetscFunctionBegin; 987ba337c44SJed Brown ierr = MatConjugate(a->A);CHKERRQ(ierr); 988ba337c44SJed Brown PetscFunctionReturn(0); 989ba337c44SJed Brown } 990ba337c44SJed Brown 991ba337c44SJed Brown PetscErrorCode MatRealPart_MPIDense(Mat A) 992ba337c44SJed Brown { 993ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 994ba337c44SJed Brown PetscErrorCode ierr; 995ba337c44SJed Brown 996ba337c44SJed Brown PetscFunctionBegin; 997ba337c44SJed Brown ierr = MatRealPart(a->A);CHKERRQ(ierr); 998ba337c44SJed Brown PetscFunctionReturn(0); 999ba337c44SJed Brown } 1000ba337c44SJed Brown 1001ba337c44SJed Brown PetscErrorCode MatImaginaryPart_MPIDense(Mat A) 1002ba337c44SJed Brown { 1003ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1004ba337c44SJed Brown PetscErrorCode ierr; 1005ba337c44SJed Brown 1006ba337c44SJed Brown PetscFunctionBegin; 1007ba337c44SJed Brown ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 1008ba337c44SJed Brown PetscFunctionReturn(0); 1009ba337c44SJed Brown } 1010ba337c44SJed Brown 101149a6ff4bSBarry Smith static PetscErrorCode MatGetColumnVector_MPIDense(Mat A,Vec v,PetscInt col) 101249a6ff4bSBarry Smith { 101349a6ff4bSBarry Smith PetscErrorCode ierr; 1014637a0070SStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*) A->data; 101549a6ff4bSBarry Smith 101649a6ff4bSBarry Smith PetscFunctionBegin; 1017637a0070SStefano Zampini if (!a->A) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Missing local matrix"); 1018637a0070SStefano Zampini if (!a->A->ops->getcolumnvector) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Missing get column operation"); 1019637a0070SStefano Zampini ierr = (*a->A->ops->getcolumnvector)(a->A,v,col);CHKERRQ(ierr); 102049a6ff4bSBarry Smith PetscFunctionReturn(0); 102149a6ff4bSBarry Smith } 102249a6ff4bSBarry Smith 102352c5f739Sprj- PETSC_INTERN PetscErrorCode MatGetColumnNorms_SeqDense(Mat,NormType,PetscReal*); 102452c5f739Sprj- 10250716a85fSBarry Smith PetscErrorCode MatGetColumnNorms_MPIDense(Mat A,NormType type,PetscReal *norms) 10260716a85fSBarry Smith { 10270716a85fSBarry Smith PetscErrorCode ierr; 10280716a85fSBarry Smith PetscInt i,n; 10290716a85fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*) A->data; 10300716a85fSBarry Smith PetscReal *work; 10310716a85fSBarry Smith 10320716a85fSBarry Smith PetscFunctionBegin; 10330298fd71SBarry Smith ierr = MatGetSize(A,NULL,&n);CHKERRQ(ierr); 1034785e854fSJed Brown ierr = PetscMalloc1(n,&work);CHKERRQ(ierr); 10350716a85fSBarry Smith ierr = MatGetColumnNorms_SeqDense(a->A,type,work);CHKERRQ(ierr); 10360716a85fSBarry Smith if (type == NORM_2) { 10370716a85fSBarry Smith for (i=0; i<n; i++) work[i] *= work[i]; 10380716a85fSBarry Smith } 10390716a85fSBarry Smith if (type == NORM_INFINITY) { 1040b2566f29SBarry Smith ierr = MPIU_Allreduce(work,norms,n,MPIU_REAL,MPIU_MAX,A->hdr.comm);CHKERRQ(ierr); 10410716a85fSBarry Smith } else { 1042b2566f29SBarry Smith ierr = MPIU_Allreduce(work,norms,n,MPIU_REAL,MPIU_SUM,A->hdr.comm);CHKERRQ(ierr); 10430716a85fSBarry Smith } 10440716a85fSBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 10450716a85fSBarry Smith if (type == NORM_2) { 10468f1a2a5eSBarry Smith for (i=0; i<n; i++) norms[i] = PetscSqrtReal(norms[i]); 10470716a85fSBarry Smith } 10480716a85fSBarry Smith PetscFunctionReturn(0); 10490716a85fSBarry Smith } 10500716a85fSBarry Smith 1051637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 10526947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVec_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10536947451fSStefano Zampini { 10546947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10556947451fSStefano Zampini PetscErrorCode ierr; 10566947451fSStefano Zampini PetscInt lda; 10576947451fSStefano Zampini 10586947451fSStefano Zampini PetscFunctionBegin; 1059616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1060616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 10616947451fSStefano Zampini if (!a->cvec) { 10626947451fSStefano Zampini ierr = VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr); 1063616b8fbbSStefano Zampini ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec);CHKERRQ(ierr); 10646947451fSStefano Zampini } 10656947451fSStefano Zampini a->vecinuse = col + 1; 10666947451fSStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 10676947451fSStefano Zampini ierr = MatDenseCUDAGetArray(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 10686947451fSStefano Zampini ierr = VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr); 10696947451fSStefano Zampini *v = a->cvec; 10706947451fSStefano Zampini PetscFunctionReturn(0); 10716947451fSStefano Zampini } 10726947451fSStefano Zampini 10736947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVec_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10746947451fSStefano Zampini { 10756947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10766947451fSStefano Zampini PetscErrorCode ierr; 10776947451fSStefano Zampini 10786947451fSStefano Zampini PetscFunctionBegin; 10795ea7661aSPierre Jolivet if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 10806947451fSStefano Zampini if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector"); 10816947451fSStefano Zampini a->vecinuse = 0; 10826947451fSStefano Zampini ierr = MatDenseCUDARestoreArray(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 10836947451fSStefano Zampini ierr = VecCUDAResetArray(a->cvec);CHKERRQ(ierr); 10846947451fSStefano Zampini *v = NULL; 10856947451fSStefano Zampini PetscFunctionReturn(0); 10866947451fSStefano Zampini } 10876947451fSStefano Zampini 10886947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecRead_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10896947451fSStefano Zampini { 10906947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10916947451fSStefano Zampini PetscInt lda; 10926947451fSStefano Zampini PetscErrorCode ierr; 10936947451fSStefano Zampini 10946947451fSStefano Zampini PetscFunctionBegin; 1095616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1096616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 10976947451fSStefano Zampini if (!a->cvec) { 10986947451fSStefano Zampini ierr = VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr); 1099616b8fbbSStefano Zampini ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec);CHKERRQ(ierr); 11006947451fSStefano Zampini } 11016947451fSStefano Zampini a->vecinuse = col + 1; 11026947451fSStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 11036947451fSStefano Zampini ierr = MatDenseCUDAGetArrayRead(a->A,&a->ptrinuse);CHKERRQ(ierr); 11046947451fSStefano Zampini ierr = VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr); 11056947451fSStefano Zampini ierr = VecLockReadPush(a->cvec);CHKERRQ(ierr); 11066947451fSStefano Zampini *v = a->cvec; 11076947451fSStefano Zampini PetscFunctionReturn(0); 11086947451fSStefano Zampini } 11096947451fSStefano Zampini 11106947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecRead_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 11116947451fSStefano Zampini { 11126947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 11136947451fSStefano Zampini PetscErrorCode ierr; 11146947451fSStefano Zampini 11156947451fSStefano Zampini PetscFunctionBegin; 1116616b8fbbSStefano Zampini if (!a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 1117616b8fbbSStefano Zampini if (!a->cvec) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 11186947451fSStefano Zampini a->vecinuse = 0; 11196947451fSStefano Zampini ierr = MatDenseCUDARestoreArrayRead(a->A,&a->ptrinuse);CHKERRQ(ierr); 11206947451fSStefano Zampini ierr = VecLockReadPop(a->cvec);CHKERRQ(ierr); 11216947451fSStefano Zampini ierr = VecCUDAResetArray(a->cvec);CHKERRQ(ierr); 11226947451fSStefano Zampini *v = NULL; 11236947451fSStefano Zampini PetscFunctionReturn(0); 11246947451fSStefano Zampini } 11256947451fSStefano Zampini 11266947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecWrite_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 11276947451fSStefano Zampini { 11286947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 11296947451fSStefano Zampini PetscErrorCode ierr; 11306947451fSStefano Zampini PetscInt lda; 11316947451fSStefano Zampini 11326947451fSStefano Zampini PetscFunctionBegin; 1133616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1134616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 11356947451fSStefano Zampini if (!a->cvec) { 11366947451fSStefano Zampini ierr = VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr); 1137616b8fbbSStefano Zampini ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec);CHKERRQ(ierr); 11386947451fSStefano Zampini } 11396947451fSStefano Zampini a->vecinuse = col + 1; 11406947451fSStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 11416947451fSStefano Zampini ierr = MatDenseCUDAGetArrayWrite(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 11426947451fSStefano Zampini ierr = VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr); 11436947451fSStefano Zampini *v = a->cvec; 11446947451fSStefano Zampini PetscFunctionReturn(0); 11456947451fSStefano Zampini } 11466947451fSStefano Zampini 11476947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 11486947451fSStefano Zampini { 11496947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 11506947451fSStefano Zampini PetscErrorCode ierr; 11516947451fSStefano Zampini 11526947451fSStefano Zampini PetscFunctionBegin; 1153616b8fbbSStefano Zampini if (!a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 1154616b8fbbSStefano Zampini if (!a->cvec) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 11556947451fSStefano Zampini a->vecinuse = 0; 11566947451fSStefano Zampini ierr = MatDenseCUDARestoreArrayWrite(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 11576947451fSStefano Zampini ierr = VecCUDAResetArray(a->cvec);CHKERRQ(ierr); 11586947451fSStefano Zampini *v = NULL; 11596947451fSStefano Zampini PetscFunctionReturn(0); 11606947451fSStefano Zampini } 11616947451fSStefano Zampini 1162637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAPlaceArray_MPIDenseCUDA(Mat A, const PetscScalar *a) 1163637a0070SStefano Zampini { 1164637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1165637a0070SStefano Zampini PetscErrorCode ierr; 1166637a0070SStefano Zampini 1167637a0070SStefano Zampini PetscFunctionBegin; 1168616b8fbbSStefano Zampini if (l->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1169616b8fbbSStefano Zampini if (l->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1170637a0070SStefano Zampini ierr = MatDenseCUDAPlaceArray(l->A,a);CHKERRQ(ierr); 1171637a0070SStefano Zampini PetscFunctionReturn(0); 1172637a0070SStefano Zampini } 1173637a0070SStefano Zampini 1174637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAResetArray_MPIDenseCUDA(Mat A) 1175637a0070SStefano Zampini { 1176637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1177637a0070SStefano Zampini PetscErrorCode ierr; 1178637a0070SStefano Zampini 1179637a0070SStefano Zampini PetscFunctionBegin; 1180616b8fbbSStefano Zampini if (l->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1181616b8fbbSStefano Zampini if (l->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1182637a0070SStefano Zampini ierr = MatDenseCUDAResetArray(l->A);CHKERRQ(ierr); 1183637a0070SStefano Zampini PetscFunctionReturn(0); 1184637a0070SStefano Zampini } 1185637a0070SStefano Zampini 1186d5ea218eSStefano Zampini static PetscErrorCode MatDenseCUDAReplaceArray_MPIDenseCUDA(Mat A, const PetscScalar *a) 1187d5ea218eSStefano Zampini { 1188d5ea218eSStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1189d5ea218eSStefano Zampini PetscErrorCode ierr; 1190d5ea218eSStefano Zampini 1191d5ea218eSStefano Zampini PetscFunctionBegin; 1192616b8fbbSStefano Zampini if (l->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1193616b8fbbSStefano Zampini if (l->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1194d5ea218eSStefano Zampini ierr = MatDenseCUDAReplaceArray(l->A,a);CHKERRQ(ierr); 1195d5ea218eSStefano Zampini PetscFunctionReturn(0); 1196d5ea218eSStefano Zampini } 1197d5ea218eSStefano Zampini 1198637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArrayWrite_MPIDenseCUDA(Mat A, PetscScalar **a) 1199637a0070SStefano Zampini { 1200637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1201637a0070SStefano Zampini PetscErrorCode ierr; 1202637a0070SStefano Zampini 1203637a0070SStefano Zampini PetscFunctionBegin; 1204637a0070SStefano Zampini ierr = MatDenseCUDAGetArrayWrite(l->A,a);CHKERRQ(ierr); 1205637a0070SStefano Zampini PetscFunctionReturn(0); 1206637a0070SStefano Zampini } 1207637a0070SStefano Zampini 1208637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArrayWrite_MPIDenseCUDA(Mat A, PetscScalar **a) 1209637a0070SStefano Zampini { 1210637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1211637a0070SStefano Zampini PetscErrorCode ierr; 1212637a0070SStefano Zampini 1213637a0070SStefano Zampini PetscFunctionBegin; 1214637a0070SStefano Zampini ierr = MatDenseCUDARestoreArrayWrite(l->A,a);CHKERRQ(ierr); 1215637a0070SStefano Zampini PetscFunctionReturn(0); 1216637a0070SStefano Zampini } 1217637a0070SStefano Zampini 1218637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArrayRead_MPIDenseCUDA(Mat A, const PetscScalar **a) 1219637a0070SStefano Zampini { 1220637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1221637a0070SStefano Zampini PetscErrorCode ierr; 1222637a0070SStefano Zampini 1223637a0070SStefano Zampini PetscFunctionBegin; 1224637a0070SStefano Zampini ierr = MatDenseCUDAGetArrayRead(l->A,a);CHKERRQ(ierr); 1225637a0070SStefano Zampini PetscFunctionReturn(0); 1226637a0070SStefano Zampini } 1227637a0070SStefano Zampini 1228637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArrayRead_MPIDenseCUDA(Mat A, const PetscScalar **a) 1229637a0070SStefano Zampini { 1230637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1231637a0070SStefano Zampini PetscErrorCode ierr; 1232637a0070SStefano Zampini 1233637a0070SStefano Zampini PetscFunctionBegin; 1234637a0070SStefano Zampini ierr = MatDenseCUDARestoreArrayRead(l->A,a);CHKERRQ(ierr); 1235637a0070SStefano Zampini PetscFunctionReturn(0); 1236637a0070SStefano Zampini } 1237637a0070SStefano Zampini 1238637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArray_MPIDenseCUDA(Mat A, PetscScalar **a) 1239637a0070SStefano Zampini { 1240637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1241637a0070SStefano Zampini PetscErrorCode ierr; 1242637a0070SStefano Zampini 1243637a0070SStefano Zampini PetscFunctionBegin; 1244637a0070SStefano Zampini ierr = MatDenseCUDAGetArray(l->A,a);CHKERRQ(ierr); 1245637a0070SStefano Zampini PetscFunctionReturn(0); 1246637a0070SStefano Zampini } 1247637a0070SStefano Zampini 1248637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArray_MPIDenseCUDA(Mat A, PetscScalar **a) 1249637a0070SStefano Zampini { 1250637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1251637a0070SStefano Zampini PetscErrorCode ierr; 1252637a0070SStefano Zampini 1253637a0070SStefano Zampini PetscFunctionBegin; 1254637a0070SStefano Zampini ierr = MatDenseCUDARestoreArray(l->A,a);CHKERRQ(ierr); 1255637a0070SStefano Zampini PetscFunctionReturn(0); 1256637a0070SStefano Zampini } 1257637a0070SStefano Zampini 12586947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecWrite_MPIDense(Mat,PetscInt,Vec*); 12596947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecRead_MPIDense(Mat,PetscInt,Vec*); 12606947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVec_MPIDense(Mat,PetscInt,Vec*); 12616947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDense(Mat,PetscInt,Vec*); 12626947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecRead_MPIDense(Mat,PetscInt,Vec*); 12636947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVec_MPIDense(Mat,PetscInt,Vec*); 12645ea7661aSPierre Jolivet static PetscErrorCode MatDenseRestoreSubMatrix_MPIDense(Mat,Mat*); 12656947451fSStefano Zampini 1266637a0070SStefano Zampini static PetscErrorCode MatBindToCPU_MPIDenseCUDA(Mat mat,PetscBool bind) 1267637a0070SStefano Zampini { 1268637a0070SStefano Zampini Mat_MPIDense *d = (Mat_MPIDense*)mat->data; 1269637a0070SStefano Zampini PetscErrorCode ierr; 1270637a0070SStefano Zampini 1271637a0070SStefano Zampini PetscFunctionBegin; 1272616b8fbbSStefano Zampini if (d->vecinuse) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1273616b8fbbSStefano Zampini if (d->matinuse) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1274637a0070SStefano Zampini if (d->A) { 1275637a0070SStefano Zampini ierr = MatBindToCPU(d->A,bind);CHKERRQ(ierr); 1276637a0070SStefano Zampini } 1277637a0070SStefano Zampini mat->boundtocpu = bind; 12786947451fSStefano Zampini if (!bind) { 12796947451fSStefano Zampini PetscBool iscuda; 12806947451fSStefano Zampini 12816947451fSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)d->cvec,VECMPICUDA,&iscuda);CHKERRQ(ierr); 12826947451fSStefano Zampini if (!iscuda) { 12836947451fSStefano Zampini ierr = VecDestroy(&d->cvec);CHKERRQ(ierr); 1284616b8fbbSStefano Zampini } 1285616b8fbbSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)d->cmat,MATMPIDENSECUDA,&iscuda);CHKERRQ(ierr); 1286616b8fbbSStefano Zampini if (!iscuda) { 12875ea7661aSPierre Jolivet ierr = MatDestroy(&d->cmat);CHKERRQ(ierr); 12886947451fSStefano Zampini } 12896947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDenseCUDA);CHKERRQ(ierr); 12906947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDenseCUDA);CHKERRQ(ierr); 12916947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDenseCUDA);CHKERRQ(ierr); 12926947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDenseCUDA);CHKERRQ(ierr); 12936947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDenseCUDA);CHKERRQ(ierr); 12946947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDenseCUDA);CHKERRQ(ierr); 12956947451fSStefano Zampini } else { 12966947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDense);CHKERRQ(ierr); 12976947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDense);CHKERRQ(ierr); 12986947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDense);CHKERRQ(ierr); 12996947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDense);CHKERRQ(ierr); 13006947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDense);CHKERRQ(ierr); 13016947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDense);CHKERRQ(ierr); 1302616b8fbbSStefano Zampini } 1303616b8fbbSStefano Zampini if (d->cmat) { 1304616b8fbbSStefano Zampini ierr = MatBindToCPU(d->cmat,bind);CHKERRQ(ierr); 13056947451fSStefano Zampini } 1306637a0070SStefano Zampini PetscFunctionReturn(0); 1307637a0070SStefano Zampini } 1308637a0070SStefano Zampini 1309637a0070SStefano Zampini PetscErrorCode MatMPIDenseCUDASetPreallocation(Mat A, PetscScalar *d_data) 1310637a0070SStefano Zampini { 1311637a0070SStefano Zampini Mat_MPIDense *d = (Mat_MPIDense*)A->data; 1312637a0070SStefano Zampini PetscErrorCode ierr; 1313637a0070SStefano Zampini PetscBool iscuda; 1314637a0070SStefano Zampini 1315637a0070SStefano Zampini PetscFunctionBegin; 1316d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 1317637a0070SStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIDENSECUDA,&iscuda);CHKERRQ(ierr); 1318637a0070SStefano Zampini if (!iscuda) PetscFunctionReturn(0); 1319637a0070SStefano Zampini ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr); 1320637a0070SStefano Zampini ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr); 1321637a0070SStefano Zampini if (!d->A) { 1322637a0070SStefano Zampini ierr = MatCreate(PETSC_COMM_SELF,&d->A);CHKERRQ(ierr); 1323637a0070SStefano Zampini ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)d->A);CHKERRQ(ierr); 1324637a0070SStefano Zampini ierr = MatSetSizes(d->A,A->rmap->n,A->cmap->N,A->rmap->n,A->cmap->N);CHKERRQ(ierr); 1325637a0070SStefano Zampini } 1326637a0070SStefano Zampini ierr = MatSetType(d->A,MATSEQDENSECUDA);CHKERRQ(ierr); 1327637a0070SStefano Zampini ierr = MatSeqDenseCUDASetPreallocation(d->A,d_data);CHKERRQ(ierr); 1328637a0070SStefano Zampini A->preallocated = PETSC_TRUE; 1329637a0070SStefano Zampini PetscFunctionReturn(0); 1330637a0070SStefano Zampini } 1331637a0070SStefano Zampini #endif 1332637a0070SStefano Zampini 133373a71a0fSBarry Smith static PetscErrorCode MatSetRandom_MPIDense(Mat x,PetscRandom rctx) 133473a71a0fSBarry Smith { 133573a71a0fSBarry Smith Mat_MPIDense *d = (Mat_MPIDense*)x->data; 133673a71a0fSBarry Smith PetscErrorCode ierr; 133773a71a0fSBarry Smith 133873a71a0fSBarry Smith PetscFunctionBegin; 1339637a0070SStefano Zampini ierr = MatSetRandom(d->A,rctx);CHKERRQ(ierr); 134073a71a0fSBarry Smith PetscFunctionReturn(0); 134173a71a0fSBarry Smith } 134273a71a0fSBarry Smith 13433b49f96aSBarry Smith static PetscErrorCode MatMissingDiagonal_MPIDense(Mat A,PetscBool *missing,PetscInt *d) 13443b49f96aSBarry Smith { 13453b49f96aSBarry Smith PetscFunctionBegin; 13463b49f96aSBarry Smith *missing = PETSC_FALSE; 13473b49f96aSBarry Smith PetscFunctionReturn(0); 13483b49f96aSBarry Smith } 13493b49f96aSBarry Smith 13504222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat,Mat,PetscReal,Mat); 1351cc48ffa7SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat,Mat,Mat); 13526718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat,Mat,Mat); 13536718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat,Mat,PetscReal,Mat); 13546718818eSStefano Zampini static PetscErrorCode MatEqual_MPIDense(Mat,Mat,PetscBool*); 13556718818eSStefano Zampini static PetscErrorCode MatLoad_MPIDense(Mat,PetscViewer); 1356cc48ffa7SToby Isaac 13578965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/ 135809dc0095SBarry Smith static struct _MatOps MatOps_Values = { MatSetValues_MPIDense, 135909dc0095SBarry Smith MatGetRow_MPIDense, 136009dc0095SBarry Smith MatRestoreRow_MPIDense, 136109dc0095SBarry Smith MatMult_MPIDense, 136297304618SKris Buschelman /* 4*/ MatMultAdd_MPIDense, 13637c922b88SBarry Smith MatMultTranspose_MPIDense, 13647c922b88SBarry Smith MatMultTransposeAdd_MPIDense, 1365f4259b30SLisandro Dalcin NULL, 1366f4259b30SLisandro Dalcin NULL, 1367f4259b30SLisandro Dalcin NULL, 1368f4259b30SLisandro Dalcin /* 10*/ NULL, 1369f4259b30SLisandro Dalcin NULL, 1370f4259b30SLisandro Dalcin NULL, 1371f4259b30SLisandro Dalcin NULL, 137209dc0095SBarry Smith MatTranspose_MPIDense, 137397304618SKris Buschelman /* 15*/ MatGetInfo_MPIDense, 13746e4ee0c6SHong Zhang MatEqual_MPIDense, 137509dc0095SBarry Smith MatGetDiagonal_MPIDense, 13765b2fa520SLois Curfman McInnes MatDiagonalScale_MPIDense, 137709dc0095SBarry Smith MatNorm_MPIDense, 137897304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPIDense, 137909dc0095SBarry Smith MatAssemblyEnd_MPIDense, 138009dc0095SBarry Smith MatSetOption_MPIDense, 138109dc0095SBarry Smith MatZeroEntries_MPIDense, 1382d519adbfSMatthew Knepley /* 24*/ MatZeroRows_MPIDense, 1383f4259b30SLisandro Dalcin NULL, 1384f4259b30SLisandro Dalcin NULL, 1385f4259b30SLisandro Dalcin NULL, 1386f4259b30SLisandro Dalcin NULL, 13874994cf47SJed Brown /* 29*/ MatSetUp_MPIDense, 1388f4259b30SLisandro Dalcin NULL, 1389f4259b30SLisandro Dalcin NULL, 1390c56a70eeSBarry Smith MatGetDiagonalBlock_MPIDense, 1391f4259b30SLisandro Dalcin NULL, 1392d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPIDense, 1393f4259b30SLisandro Dalcin NULL, 1394f4259b30SLisandro Dalcin NULL, 1395f4259b30SLisandro Dalcin NULL, 1396f4259b30SLisandro Dalcin NULL, 1397d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPIDense, 13987dae84e0SHong Zhang MatCreateSubMatrices_MPIDense, 1399f4259b30SLisandro Dalcin NULL, 140009dc0095SBarry Smith MatGetValues_MPIDense, 1401*a76f77c3SStefano Zampini MatCopy_MPIDense, 1402f4259b30SLisandro Dalcin /* 44*/ NULL, 140309dc0095SBarry Smith MatScale_MPIDense, 14047d68702bSBarry Smith MatShift_Basic, 1405f4259b30SLisandro Dalcin NULL, 1406f4259b30SLisandro Dalcin NULL, 140773a71a0fSBarry Smith /* 49*/ MatSetRandom_MPIDense, 1408f4259b30SLisandro Dalcin NULL, 1409f4259b30SLisandro Dalcin NULL, 1410f4259b30SLisandro Dalcin NULL, 1411f4259b30SLisandro Dalcin NULL, 1412f4259b30SLisandro Dalcin /* 54*/ NULL, 1413f4259b30SLisandro Dalcin NULL, 1414f4259b30SLisandro Dalcin NULL, 1415f4259b30SLisandro Dalcin NULL, 1416f4259b30SLisandro Dalcin NULL, 14177dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPIDense, 1418b9b97703SBarry Smith MatDestroy_MPIDense, 1419b9b97703SBarry Smith MatView_MPIDense, 1420f4259b30SLisandro Dalcin NULL, 1421f4259b30SLisandro Dalcin NULL, 1422f4259b30SLisandro Dalcin /* 64*/ NULL, 1423f4259b30SLisandro Dalcin NULL, 1424f4259b30SLisandro Dalcin NULL, 1425f4259b30SLisandro Dalcin NULL, 1426f4259b30SLisandro Dalcin NULL, 1427f4259b30SLisandro Dalcin /* 69*/ NULL, 1428f4259b30SLisandro Dalcin NULL, 1429f4259b30SLisandro Dalcin NULL, 1430f4259b30SLisandro Dalcin NULL, 1431f4259b30SLisandro Dalcin NULL, 1432f4259b30SLisandro Dalcin /* 74*/ NULL, 1433f4259b30SLisandro Dalcin NULL, 1434f4259b30SLisandro Dalcin NULL, 1435f4259b30SLisandro Dalcin NULL, 1436f4259b30SLisandro Dalcin NULL, 1437f4259b30SLisandro Dalcin /* 79*/ NULL, 1438f4259b30SLisandro Dalcin NULL, 1439f4259b30SLisandro Dalcin NULL, 1440f4259b30SLisandro Dalcin NULL, 14415bba2384SShri Abhyankar /* 83*/ MatLoad_MPIDense, 1442f4259b30SLisandro Dalcin NULL, 1443f4259b30SLisandro Dalcin NULL, 1444f4259b30SLisandro Dalcin NULL, 1445f4259b30SLisandro Dalcin NULL, 1446f4259b30SLisandro Dalcin NULL, 1447f4259b30SLisandro Dalcin /* 89*/ NULL, 1448f4259b30SLisandro Dalcin NULL, 1449f4259b30SLisandro Dalcin NULL, 1450f4259b30SLisandro Dalcin NULL, 1451f4259b30SLisandro Dalcin NULL, 1452f4259b30SLisandro Dalcin /* 94*/ NULL, 1453f4259b30SLisandro Dalcin NULL, 14546718818eSStefano Zampini MatMatTransposeMultSymbolic_MPIDense_MPIDense, 1455cc48ffa7SToby Isaac MatMatTransposeMultNumeric_MPIDense_MPIDense, 1456f4259b30SLisandro Dalcin NULL, 14574222ddf1SHong Zhang /* 99*/ MatProductSetFromOptions_MPIDense, 1458f4259b30SLisandro Dalcin NULL, 1459f4259b30SLisandro Dalcin NULL, 1460ba337c44SJed Brown MatConjugate_MPIDense, 1461f4259b30SLisandro Dalcin NULL, 1462f4259b30SLisandro Dalcin /*104*/ NULL, 1463ba337c44SJed Brown MatRealPart_MPIDense, 1464ba337c44SJed Brown MatImaginaryPart_MPIDense, 1465f4259b30SLisandro Dalcin NULL, 1466f4259b30SLisandro Dalcin NULL, 1467f4259b30SLisandro Dalcin /*109*/ NULL, 1468f4259b30SLisandro Dalcin NULL, 1469f4259b30SLisandro Dalcin NULL, 147049a6ff4bSBarry Smith MatGetColumnVector_MPIDense, 14713b49f96aSBarry Smith MatMissingDiagonal_MPIDense, 1472f4259b30SLisandro Dalcin /*114*/ NULL, 1473f4259b30SLisandro Dalcin NULL, 1474f4259b30SLisandro Dalcin NULL, 1475f4259b30SLisandro Dalcin NULL, 1476f4259b30SLisandro Dalcin NULL, 1477f4259b30SLisandro Dalcin /*119*/ NULL, 1478f4259b30SLisandro Dalcin NULL, 1479f4259b30SLisandro Dalcin NULL, 1480f4259b30SLisandro Dalcin NULL, 1481f4259b30SLisandro Dalcin NULL, 1482f4259b30SLisandro Dalcin /*124*/ NULL, 14833964eb88SJed Brown MatGetColumnNorms_MPIDense, 1484f4259b30SLisandro Dalcin NULL, 1485f4259b30SLisandro Dalcin NULL, 1486f4259b30SLisandro Dalcin NULL, 1487f4259b30SLisandro Dalcin /*129*/ NULL, 1488f4259b30SLisandro Dalcin NULL, 14896718818eSStefano Zampini MatTransposeMatMultSymbolic_MPIDense_MPIDense, 1490cb20be35SHong Zhang MatTransposeMatMultNumeric_MPIDense_MPIDense, 1491f4259b30SLisandro Dalcin NULL, 1492f4259b30SLisandro Dalcin /*134*/ NULL, 1493f4259b30SLisandro Dalcin NULL, 1494f4259b30SLisandro Dalcin NULL, 1495f4259b30SLisandro Dalcin NULL, 1496f4259b30SLisandro Dalcin NULL, 1497f4259b30SLisandro Dalcin /*139*/ NULL, 1498f4259b30SLisandro Dalcin NULL, 1499f4259b30SLisandro Dalcin NULL, 1500f4259b30SLisandro Dalcin NULL, 1501f4259b30SLisandro Dalcin NULL, 15024222ddf1SHong Zhang MatCreateMPIMatConcatenateSeqMat_MPIDense, 1503f4259b30SLisandro Dalcin /*145*/ NULL, 1504f4259b30SLisandro Dalcin NULL, 1505f4259b30SLisandro Dalcin NULL 1506ba337c44SJed Brown }; 15078965ea79SLois Curfman McInnes 15087087cfbeSBarry Smith PetscErrorCode MatMPIDenseSetPreallocation_MPIDense(Mat mat,PetscScalar *data) 1509a23d5eceSKris Buschelman { 1510637a0070SStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)mat->data; 1511637a0070SStefano Zampini PetscBool iscuda; 1512dfbe8321SBarry Smith PetscErrorCode ierr; 1513a23d5eceSKris Buschelman 1514a23d5eceSKris Buschelman PetscFunctionBegin; 1515616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 151634ef9618SShri Abhyankar ierr = PetscLayoutSetUp(mat->rmap);CHKERRQ(ierr); 151734ef9618SShri Abhyankar ierr = PetscLayoutSetUp(mat->cmap);CHKERRQ(ierr); 1518637a0070SStefano Zampini if (!a->A) { 1519f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&a->A);CHKERRQ(ierr); 15203bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 1521637a0070SStefano Zampini ierr = MatSetSizes(a->A,mat->rmap->n,mat->cmap->N,mat->rmap->n,mat->cmap->N);CHKERRQ(ierr); 1522637a0070SStefano Zampini } 1523637a0070SStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)mat,MATMPIDENSECUDA,&iscuda);CHKERRQ(ierr); 1524637a0070SStefano Zampini ierr = MatSetType(a->A,iscuda ? MATSEQDENSECUDA : MATSEQDENSE);CHKERRQ(ierr); 1525637a0070SStefano Zampini ierr = MatSeqDenseSetPreallocation(a->A,data);CHKERRQ(ierr); 1526637a0070SStefano Zampini mat->preallocated = PETSC_TRUE; 1527a23d5eceSKris Buschelman PetscFunctionReturn(0); 1528a23d5eceSKris Buschelman } 1529a23d5eceSKris Buschelman 153065b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 1531cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIDense_Elemental(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 15328baccfbdSHong Zhang { 15338ea901baSHong Zhang Mat mat_elemental; 15348ea901baSHong Zhang PetscErrorCode ierr; 153532d7a744SHong Zhang PetscScalar *v; 153632d7a744SHong Zhang PetscInt m=A->rmap->n,N=A->cmap->N,rstart=A->rmap->rstart,i,*rows,*cols; 15378ea901baSHong Zhang 15388baccfbdSHong Zhang PetscFunctionBegin; 1539378336b6SHong Zhang if (reuse == MAT_REUSE_MATRIX) { 1540378336b6SHong Zhang mat_elemental = *newmat; 1541378336b6SHong Zhang ierr = MatZeroEntries(*newmat);CHKERRQ(ierr); 1542378336b6SHong Zhang } else { 1543378336b6SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental);CHKERRQ(ierr); 1544378336b6SHong Zhang ierr = MatSetSizes(mat_elemental,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 1545378336b6SHong Zhang ierr = MatSetType(mat_elemental,MATELEMENTAL);CHKERRQ(ierr); 1546378336b6SHong Zhang ierr = MatSetUp(mat_elemental);CHKERRQ(ierr); 154732d7a744SHong Zhang ierr = MatSetOption(mat_elemental,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 1548378336b6SHong Zhang } 1549378336b6SHong Zhang 155032d7a744SHong Zhang ierr = PetscMalloc2(m,&rows,N,&cols);CHKERRQ(ierr); 155132d7a744SHong Zhang for (i=0; i<N; i++) cols[i] = i; 155232d7a744SHong Zhang for (i=0; i<m; i++) rows[i] = rstart + i; 15538ea901baSHong Zhang 1554637a0070SStefano Zampini /* PETSc-Elemental interface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */ 155532d7a744SHong Zhang ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr); 155632d7a744SHong Zhang ierr = MatSetValues(mat_elemental,m,rows,N,cols,v,ADD_VALUES);CHKERRQ(ierr); 15578ea901baSHong Zhang ierr = MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 15588ea901baSHong Zhang ierr = MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 155932d7a744SHong Zhang ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr); 156032d7a744SHong Zhang ierr = PetscFree2(rows,cols);CHKERRQ(ierr); 15618ea901baSHong Zhang 1562511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 156328be2f97SBarry Smith ierr = MatHeaderReplace(A,&mat_elemental);CHKERRQ(ierr); 15648ea901baSHong Zhang } else { 15658ea901baSHong Zhang *newmat = mat_elemental; 15668ea901baSHong Zhang } 15678baccfbdSHong Zhang PetscFunctionReturn(0); 15688baccfbdSHong Zhang } 156965b80a83SHong Zhang #endif 15708baccfbdSHong Zhang 1571af53bab2SHong Zhang static PetscErrorCode MatDenseGetColumn_MPIDense(Mat A,PetscInt col,PetscScalar **vals) 157286aefd0dSHong Zhang { 157386aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 157486aefd0dSHong Zhang PetscErrorCode ierr; 157586aefd0dSHong Zhang 157686aefd0dSHong Zhang PetscFunctionBegin; 157786aefd0dSHong Zhang ierr = MatDenseGetColumn(mat->A,col,vals);CHKERRQ(ierr); 157886aefd0dSHong Zhang PetscFunctionReturn(0); 157986aefd0dSHong Zhang } 158086aefd0dSHong Zhang 1581af53bab2SHong Zhang static PetscErrorCode MatDenseRestoreColumn_MPIDense(Mat A,PetscScalar **vals) 158286aefd0dSHong Zhang { 158386aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 158486aefd0dSHong Zhang PetscErrorCode ierr; 158586aefd0dSHong Zhang 158686aefd0dSHong Zhang PetscFunctionBegin; 158786aefd0dSHong Zhang ierr = MatDenseRestoreColumn(mat->A,vals);CHKERRQ(ierr); 158886aefd0dSHong Zhang PetscFunctionReturn(0); 158986aefd0dSHong Zhang } 159086aefd0dSHong Zhang 159194e2cb23SJakub Kruzik PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIDense(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 159294e2cb23SJakub Kruzik { 159394e2cb23SJakub Kruzik PetscErrorCode ierr; 159494e2cb23SJakub Kruzik Mat_MPIDense *mat; 159594e2cb23SJakub Kruzik PetscInt m,nloc,N; 159694e2cb23SJakub Kruzik 159794e2cb23SJakub Kruzik PetscFunctionBegin; 159894e2cb23SJakub Kruzik ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr); 159994e2cb23SJakub Kruzik ierr = MatGetLocalSize(inmat,NULL,&nloc);CHKERRQ(ierr); 160094e2cb23SJakub Kruzik if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 160194e2cb23SJakub Kruzik PetscInt sum; 160294e2cb23SJakub Kruzik 160394e2cb23SJakub Kruzik if (n == PETSC_DECIDE) { 160494e2cb23SJakub Kruzik ierr = PetscSplitOwnership(comm,&n,&N);CHKERRQ(ierr); 160594e2cb23SJakub Kruzik } 160694e2cb23SJakub Kruzik /* Check sum(n) = N */ 160794e2cb23SJakub Kruzik ierr = MPIU_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 160894e2cb23SJakub Kruzik if (sum != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns %D != global columns %D",sum,N); 160994e2cb23SJakub Kruzik 161094e2cb23SJakub Kruzik ierr = MatCreateDense(comm,m,n,PETSC_DETERMINE,N,NULL,outmat);CHKERRQ(ierr); 161194e2cb23SJakub Kruzik } 161294e2cb23SJakub Kruzik 161394e2cb23SJakub Kruzik /* numeric phase */ 161494e2cb23SJakub Kruzik mat = (Mat_MPIDense*)(*outmat)->data; 161594e2cb23SJakub Kruzik ierr = MatCopy(inmat,mat->A,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 161694e2cb23SJakub Kruzik ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 161794e2cb23SJakub Kruzik ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 161894e2cb23SJakub Kruzik PetscFunctionReturn(0); 161994e2cb23SJakub Kruzik } 162094e2cb23SJakub Kruzik 1621637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1622637a0070SStefano Zampini PetscErrorCode MatConvert_MPIDenseCUDA_MPIDense(Mat M,MatType type,MatReuse reuse,Mat *newmat) 1623637a0070SStefano Zampini { 1624637a0070SStefano Zampini Mat B; 1625637a0070SStefano Zampini Mat_MPIDense *m; 1626637a0070SStefano Zampini PetscErrorCode ierr; 1627637a0070SStefano Zampini 1628637a0070SStefano Zampini PetscFunctionBegin; 1629637a0070SStefano Zampini if (reuse == MAT_INITIAL_MATRIX) { 1630637a0070SStefano Zampini ierr = MatDuplicate(M,MAT_COPY_VALUES,newmat);CHKERRQ(ierr); 1631637a0070SStefano Zampini } else if (reuse == MAT_REUSE_MATRIX) { 1632637a0070SStefano Zampini ierr = MatCopy(M,*newmat,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 1633637a0070SStefano Zampini } 1634637a0070SStefano Zampini 1635637a0070SStefano Zampini B = *newmat; 1636637a0070SStefano Zampini ierr = MatBindToCPU_MPIDenseCUDA(B,PETSC_TRUE);CHKERRQ(ierr); 1637637a0070SStefano Zampini ierr = PetscFree(B->defaultvectype);CHKERRQ(ierr); 1638637a0070SStefano Zampini ierr = PetscStrallocpy(VECSTANDARD,&B->defaultvectype);CHKERRQ(ierr); 1639637a0070SStefano Zampini ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIDENSE);CHKERRQ(ierr); 1640637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpidensecuda_mpidense_C",NULL);CHKERRQ(ierr); 1641637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaij_mpidensecuda_C",NULL);CHKERRQ(ierr); 16426718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaijcusparse_mpidensecuda_C",NULL);CHKERRQ(ierr); 1643637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaij_C",NULL);CHKERRQ(ierr); 16446718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaijcusparse_C",NULL);CHKERRQ(ierr); 1645637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArray_C",NULL);CHKERRQ(ierr); 1646637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayRead_C",NULL);CHKERRQ(ierr); 1647637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayWrite_C",NULL);CHKERRQ(ierr); 1648637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArray_C",NULL);CHKERRQ(ierr); 1649637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayRead_C",NULL);CHKERRQ(ierr); 1650637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayWrite_C",NULL);CHKERRQ(ierr); 1651637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAPlaceArray_C",NULL);CHKERRQ(ierr); 1652637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAResetArray_C",NULL);CHKERRQ(ierr); 1653d5ea218eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAReplaceArray_C",NULL);CHKERRQ(ierr); 1654637a0070SStefano Zampini m = (Mat_MPIDense*)(B)->data; 1655637a0070SStefano Zampini if (m->A) { 1656637a0070SStefano Zampini ierr = MatConvert(m->A,MATSEQDENSE,MAT_INPLACE_MATRIX,&m->A);CHKERRQ(ierr); 1657637a0070SStefano Zampini ierr = MatSetUpMultiply_MPIDense(B);CHKERRQ(ierr); 1658637a0070SStefano Zampini } 1659637a0070SStefano Zampini B->ops->bindtocpu = NULL; 1660637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_CPU; 1661637a0070SStefano Zampini PetscFunctionReturn(0); 1662637a0070SStefano Zampini } 1663637a0070SStefano Zampini 1664637a0070SStefano Zampini PetscErrorCode MatConvert_MPIDense_MPIDenseCUDA(Mat M,MatType type,MatReuse reuse,Mat *newmat) 1665637a0070SStefano Zampini { 1666637a0070SStefano Zampini Mat B; 1667637a0070SStefano Zampini Mat_MPIDense *m; 1668637a0070SStefano Zampini PetscErrorCode ierr; 1669637a0070SStefano Zampini 1670637a0070SStefano Zampini PetscFunctionBegin; 1671637a0070SStefano Zampini if (reuse == MAT_INITIAL_MATRIX) { 1672637a0070SStefano Zampini ierr = MatDuplicate(M,MAT_COPY_VALUES,newmat);CHKERRQ(ierr); 1673637a0070SStefano Zampini } else if (reuse == MAT_REUSE_MATRIX) { 1674637a0070SStefano Zampini ierr = MatCopy(M,*newmat,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 1675637a0070SStefano Zampini } 1676637a0070SStefano Zampini 1677637a0070SStefano Zampini B = *newmat; 1678637a0070SStefano Zampini ierr = PetscFree(B->defaultvectype);CHKERRQ(ierr); 1679637a0070SStefano Zampini ierr = PetscStrallocpy(VECCUDA,&B->defaultvectype);CHKERRQ(ierr); 1680637a0070SStefano Zampini ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIDENSECUDA);CHKERRQ(ierr); 1681637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpidensecuda_mpidense_C", MatConvert_MPIDenseCUDA_MPIDense);CHKERRQ(ierr); 1682637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaij_mpidensecuda_C", MatProductSetFromOptions_MPIAIJ_MPIDense);CHKERRQ(ierr); 16836718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaijcusparse_mpidensecuda_C",MatProductSetFromOptions_MPIAIJ_MPIDense);CHKERRQ(ierr); 1684637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaij_C", MatProductSetFromOptions_MPIDense_MPIAIJ);CHKERRQ(ierr); 16856718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaijcusparse_C",MatProductSetFromOptions_MPIDense_MPIAIJ);CHKERRQ(ierr); 1686637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArray_C", MatDenseCUDAGetArray_MPIDenseCUDA);CHKERRQ(ierr); 1687637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayRead_C", MatDenseCUDAGetArrayRead_MPIDenseCUDA);CHKERRQ(ierr); 1688637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayWrite_C", MatDenseCUDAGetArrayWrite_MPIDenseCUDA);CHKERRQ(ierr); 1689637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArray_C", MatDenseCUDARestoreArray_MPIDenseCUDA);CHKERRQ(ierr); 1690637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayRead_C", MatDenseCUDARestoreArrayRead_MPIDenseCUDA);CHKERRQ(ierr); 1691637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayWrite_C", MatDenseCUDARestoreArrayWrite_MPIDenseCUDA);CHKERRQ(ierr); 1692637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAPlaceArray_C", MatDenseCUDAPlaceArray_MPIDenseCUDA);CHKERRQ(ierr); 1693637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAResetArray_C", MatDenseCUDAResetArray_MPIDenseCUDA);CHKERRQ(ierr); 1694d5ea218eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAReplaceArray_C", MatDenseCUDAReplaceArray_MPIDenseCUDA);CHKERRQ(ierr); 1695637a0070SStefano Zampini m = (Mat_MPIDense*)(B)->data; 1696637a0070SStefano Zampini if (m->A) { 1697637a0070SStefano Zampini ierr = MatConvert(m->A,MATSEQDENSECUDA,MAT_INPLACE_MATRIX,&m->A);CHKERRQ(ierr); 1698637a0070SStefano Zampini ierr = MatSetUpMultiply_MPIDense(B);CHKERRQ(ierr); 1699637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_BOTH; 1700637a0070SStefano Zampini } else { 1701637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_UNALLOCATED; 1702637a0070SStefano Zampini } 1703637a0070SStefano Zampini ierr = MatBindToCPU_MPIDenseCUDA(B,PETSC_FALSE);CHKERRQ(ierr); 1704637a0070SStefano Zampini 1705637a0070SStefano Zampini B->ops->bindtocpu = MatBindToCPU_MPIDenseCUDA; 1706637a0070SStefano Zampini PetscFunctionReturn(0); 1707637a0070SStefano Zampini } 1708637a0070SStefano Zampini #endif 1709637a0070SStefano Zampini 17106947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVec_MPIDense(Mat A,PetscInt col,Vec *v) 17116947451fSStefano Zampini { 17126947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17136947451fSStefano Zampini PetscErrorCode ierr; 17146947451fSStefano Zampini PetscInt lda; 17156947451fSStefano Zampini 17166947451fSStefano Zampini PetscFunctionBegin; 1717616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1718616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 17196947451fSStefano Zampini if (!a->cvec) { 17206947451fSStefano Zampini ierr = VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr); 17216947451fSStefano Zampini } 17226947451fSStefano Zampini a->vecinuse = col + 1; 17236947451fSStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 17246947451fSStefano Zampini ierr = MatDenseGetArray(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 17256947451fSStefano Zampini ierr = VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr); 17266947451fSStefano Zampini *v = a->cvec; 17276947451fSStefano Zampini PetscFunctionReturn(0); 17286947451fSStefano Zampini } 17296947451fSStefano Zampini 17306947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVec_MPIDense(Mat A,PetscInt col,Vec *v) 17316947451fSStefano Zampini { 17326947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17336947451fSStefano Zampini PetscErrorCode ierr; 17346947451fSStefano Zampini 17356947451fSStefano Zampini PetscFunctionBegin; 17365ea7661aSPierre Jolivet if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 17376947451fSStefano Zampini if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector"); 17386947451fSStefano Zampini a->vecinuse = 0; 17396947451fSStefano Zampini ierr = MatDenseRestoreArray(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 17406947451fSStefano Zampini ierr = VecResetArray(a->cvec);CHKERRQ(ierr); 17416947451fSStefano Zampini *v = NULL; 17426947451fSStefano Zampini PetscFunctionReturn(0); 17436947451fSStefano Zampini } 17446947451fSStefano Zampini 17456947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecRead_MPIDense(Mat A,PetscInt col,Vec *v) 17466947451fSStefano Zampini { 17476947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17486947451fSStefano Zampini PetscErrorCode ierr; 17496947451fSStefano Zampini PetscInt lda; 17506947451fSStefano Zampini 17516947451fSStefano Zampini PetscFunctionBegin; 1752616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1753616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 17546947451fSStefano Zampini if (!a->cvec) { 17556947451fSStefano Zampini ierr = VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr); 17566947451fSStefano Zampini } 17576947451fSStefano Zampini a->vecinuse = col + 1; 17586947451fSStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 17596947451fSStefano Zampini ierr = MatDenseGetArrayRead(a->A,&a->ptrinuse);CHKERRQ(ierr); 17606947451fSStefano Zampini ierr = VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr); 17616947451fSStefano Zampini ierr = VecLockReadPush(a->cvec);CHKERRQ(ierr); 17626947451fSStefano Zampini *v = a->cvec; 17636947451fSStefano Zampini PetscFunctionReturn(0); 17646947451fSStefano Zampini } 17656947451fSStefano Zampini 17666947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecRead_MPIDense(Mat A,PetscInt col,Vec *v) 17676947451fSStefano Zampini { 17686947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17696947451fSStefano Zampini PetscErrorCode ierr; 17706947451fSStefano Zampini 17716947451fSStefano Zampini PetscFunctionBegin; 1772616b8fbbSStefano Zampini if (!a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 1773616b8fbbSStefano Zampini if (!a->cvec) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 17746947451fSStefano Zampini a->vecinuse = 0; 17756947451fSStefano Zampini ierr = MatDenseRestoreArrayRead(a->A,&a->ptrinuse);CHKERRQ(ierr); 17766947451fSStefano Zampini ierr = VecLockReadPop(a->cvec);CHKERRQ(ierr); 17776947451fSStefano Zampini ierr = VecResetArray(a->cvec);CHKERRQ(ierr); 17786947451fSStefano Zampini *v = NULL; 17796947451fSStefano Zampini PetscFunctionReturn(0); 17806947451fSStefano Zampini } 17816947451fSStefano Zampini 17826947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecWrite_MPIDense(Mat A,PetscInt col,Vec *v) 17836947451fSStefano Zampini { 17846947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17856947451fSStefano Zampini PetscErrorCode ierr; 17866947451fSStefano Zampini PetscInt lda; 17876947451fSStefano Zampini 17886947451fSStefano Zampini PetscFunctionBegin; 1789616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1790616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 17916947451fSStefano Zampini if (!a->cvec) { 17926947451fSStefano Zampini ierr = VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr); 17936947451fSStefano Zampini } 17946947451fSStefano Zampini a->vecinuse = col + 1; 17956947451fSStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 17966947451fSStefano Zampini ierr = MatDenseGetArrayWrite(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 17976947451fSStefano Zampini ierr = VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr); 17986947451fSStefano Zampini *v = a->cvec; 17996947451fSStefano Zampini PetscFunctionReturn(0); 18006947451fSStefano Zampini } 18016947451fSStefano Zampini 18026947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDense(Mat A,PetscInt col,Vec *v) 18036947451fSStefano Zampini { 18046947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 18056947451fSStefano Zampini PetscErrorCode ierr; 18066947451fSStefano Zampini 18076947451fSStefano Zampini PetscFunctionBegin; 1808616b8fbbSStefano Zampini if (!a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 1809616b8fbbSStefano Zampini if (!a->cvec) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 18106947451fSStefano Zampini a->vecinuse = 0; 18116947451fSStefano Zampini ierr = MatDenseRestoreArrayWrite(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 18126947451fSStefano Zampini ierr = VecResetArray(a->cvec);CHKERRQ(ierr); 18136947451fSStefano Zampini *v = NULL; 18146947451fSStefano Zampini PetscFunctionReturn(0); 18156947451fSStefano Zampini } 18166947451fSStefano Zampini 18175ea7661aSPierre Jolivet PetscErrorCode MatDenseGetSubMatrix_MPIDense(Mat A,PetscInt cbegin,PetscInt cend,Mat *v) 18185ea7661aSPierre Jolivet { 18195ea7661aSPierre Jolivet Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1820616b8fbbSStefano Zampini Mat_MPIDense *c; 18215ea7661aSPierre Jolivet PetscErrorCode ierr; 1822616b8fbbSStefano Zampini MPI_Comm comm; 1823616b8fbbSStefano Zampini PetscBool setup = PETSC_FALSE; 18245ea7661aSPierre Jolivet 18255ea7661aSPierre Jolivet PetscFunctionBegin; 1826616b8fbbSStefano Zampini ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 1827616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(comm,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1828616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(comm,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 18295ea7661aSPierre Jolivet if (!a->cmat) { 1830616b8fbbSStefano Zampini setup = PETSC_TRUE; 1831616b8fbbSStefano Zampini ierr = MatCreate(comm,&a->cmat);CHKERRQ(ierr); 1832616b8fbbSStefano Zampini ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)a->cmat);CHKERRQ(ierr); 1833616b8fbbSStefano Zampini ierr = MatSetType(a->cmat,((PetscObject)A)->type_name);CHKERRQ(ierr); 1834616b8fbbSStefano Zampini ierr = PetscLayoutReference(A->rmap,&a->cmat->rmap);CHKERRQ(ierr); 1835616b8fbbSStefano Zampini ierr = PetscLayoutSetSize(a->cmat->cmap,cend-cbegin);CHKERRQ(ierr); 1836616b8fbbSStefano Zampini ierr = PetscLayoutSetUp(a->cmat->cmap);CHKERRQ(ierr); 1837616b8fbbSStefano Zampini } else if (cend-cbegin != a->cmat->cmap->N) { 1838616b8fbbSStefano Zampini setup = PETSC_TRUE; 1839616b8fbbSStefano Zampini ierr = PetscLayoutDestroy(&a->cmat->cmap);CHKERRQ(ierr); 1840616b8fbbSStefano Zampini ierr = PetscLayoutCreate(comm,&a->cmat->cmap);CHKERRQ(ierr); 1841616b8fbbSStefano Zampini ierr = PetscLayoutSetSize(a->cmat->cmap,cend-cbegin);CHKERRQ(ierr); 1842616b8fbbSStefano Zampini ierr = PetscLayoutSetUp(a->cmat->cmap);CHKERRQ(ierr); 18435ea7661aSPierre Jolivet } 1844616b8fbbSStefano Zampini c = (Mat_MPIDense*)a->cmat->data; 1845616b8fbbSStefano Zampini if (c->A) SETERRQ(comm,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1846616b8fbbSStefano Zampini ierr = MatDenseGetSubMatrix(a->A,cbegin,cend,&c->A);CHKERRQ(ierr); 1847616b8fbbSStefano Zampini if (setup) { /* do we really need this? */ 1848616b8fbbSStefano Zampini ierr = MatSetUpMultiply_MPIDense(a->cmat);CHKERRQ(ierr); 1849616b8fbbSStefano Zampini } 1850616b8fbbSStefano Zampini a->cmat->preallocated = PETSC_TRUE; 1851616b8fbbSStefano Zampini a->cmat->assembled = PETSC_TRUE; 18525ea7661aSPierre Jolivet a->matinuse = cbegin + 1; 18535ea7661aSPierre Jolivet *v = a->cmat; 18545ea7661aSPierre Jolivet PetscFunctionReturn(0); 18555ea7661aSPierre Jolivet } 18565ea7661aSPierre Jolivet 18575ea7661aSPierre Jolivet PetscErrorCode MatDenseRestoreSubMatrix_MPIDense(Mat A,Mat *v) 18585ea7661aSPierre Jolivet { 18595ea7661aSPierre Jolivet Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1860616b8fbbSStefano Zampini Mat_MPIDense *c; 18615ea7661aSPierre Jolivet PetscErrorCode ierr; 18625ea7661aSPierre Jolivet 18635ea7661aSPierre Jolivet PetscFunctionBegin; 1864616b8fbbSStefano Zampini if (!a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetSubMatrix() first"); 1865616b8fbbSStefano Zampini if (!a->cmat) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal matrix"); 1866616b8fbbSStefano Zampini if (*v != a->cmat) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Not the matrix obtained from MatDenseGetSubMatrix()"); 18675ea7661aSPierre Jolivet a->matinuse = 0; 1868616b8fbbSStefano Zampini c = (Mat_MPIDense*)a->cmat->data; 1869616b8fbbSStefano Zampini ierr = MatDenseRestoreSubMatrix(a->A,&c->A);CHKERRQ(ierr); 18705ea7661aSPierre Jolivet *v = NULL; 18715ea7661aSPierre Jolivet PetscFunctionReturn(0); 18725ea7661aSPierre Jolivet } 18735ea7661aSPierre Jolivet 18748cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIDense(Mat mat) 1875273d9f13SBarry Smith { 1876273d9f13SBarry Smith Mat_MPIDense *a; 1877dfbe8321SBarry Smith PetscErrorCode ierr; 1878273d9f13SBarry Smith 1879273d9f13SBarry Smith PetscFunctionBegin; 1880b00a9115SJed Brown ierr = PetscNewLog(mat,&a);CHKERRQ(ierr); 1881b0a32e0cSBarry Smith mat->data = (void*)a; 1882273d9f13SBarry Smith ierr = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1883273d9f13SBarry Smith 1884273d9f13SBarry Smith mat->insertmode = NOT_SET_VALUES; 1885273d9f13SBarry Smith 1886273d9f13SBarry Smith /* build cache for off array entries formed */ 1887273d9f13SBarry Smith a->donotstash = PETSC_FALSE; 18882205254eSKarl Rupp 1889ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)mat),1,&mat->stash);CHKERRQ(ierr); 1890273d9f13SBarry Smith 1891273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 1892f4259b30SLisandro Dalcin a->lvec = NULL; 1893f4259b30SLisandro Dalcin a->Mvctx = NULL; 1894273d9f13SBarry Smith a->roworiented = PETSC_TRUE; 1895273d9f13SBarry Smith 189649a6ff4bSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",MatDenseGetLDA_MPIDense);CHKERRQ(ierr); 1897ad16ce7aSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseSetLDA_C",MatDenseSetLDA_MPIDense);CHKERRQ(ierr); 1898bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",MatDenseGetArray_MPIDense);CHKERRQ(ierr); 18998572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",MatDenseRestoreArray_MPIDense);CHKERRQ(ierr); 19008572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",MatDenseGetArrayRead_MPIDense);CHKERRQ(ierr); 19018572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",MatDenseRestoreArrayRead_MPIDense);CHKERRQ(ierr); 19026947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayWrite_C",MatDenseGetArrayWrite_MPIDense);CHKERRQ(ierr); 19036947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayWrite_C",MatDenseRestoreArrayWrite_MPIDense);CHKERRQ(ierr); 1904d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",MatDensePlaceArray_MPIDense);CHKERRQ(ierr); 1905d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",MatDenseResetArray_MPIDense);CHKERRQ(ierr); 1906d5ea218eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseReplaceArray_C",MatDenseReplaceArray_MPIDense);CHKERRQ(ierr); 19076947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDense);CHKERRQ(ierr); 19086947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDense);CHKERRQ(ierr); 19096947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDense);CHKERRQ(ierr); 19106947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDense);CHKERRQ(ierr); 19116947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDense);CHKERRQ(ierr); 19126947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDense);CHKERRQ(ierr); 19135ea7661aSPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetSubMatrix_C",MatDenseGetSubMatrix_MPIDense);CHKERRQ(ierr); 19145ea7661aSPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreSubMatrix_C",MatDenseRestoreSubMatrix_MPIDense);CHKERRQ(ierr); 19158baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 19168baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",MatConvert_MPIDense_Elemental);CHKERRQ(ierr); 19178baccfbdSHong Zhang #endif 1918d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 1919d24d4204SJose E. Roman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_scalapack_C",MatConvert_Dense_ScaLAPACK);CHKERRQ(ierr); 1920d24d4204SJose E. Roman #endif 1921637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1922637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_mpidensecuda_C",MatConvert_MPIDense_MPIDenseCUDA);CHKERRQ(ierr); 1923637a0070SStefano Zampini #endif 1924bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",MatMPIDenseSetPreallocation_MPIDense);CHKERRQ(ierr); 19254222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaij_mpidense_C",MatProductSetFromOptions_MPIAIJ_MPIDense);CHKERRQ(ierr); 19264222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaij_C",MatProductSetFromOptions_MPIDense_MPIAIJ);CHKERRQ(ierr); 19276718818eSStefano Zampini #if defined(PETSC_HAVE_CUDA) 19286718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaijcusparse_mpidense_C",MatProductSetFromOptions_MPIAIJ_MPIDense);CHKERRQ(ierr); 19296718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaijcusparse_C",MatProductSetFromOptions_MPIDense_MPIAIJ);CHKERRQ(ierr); 19306718818eSStefano Zampini #endif 19318949adfdSHong Zhang 1932af53bab2SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",MatDenseGetColumn_MPIDense);CHKERRQ(ierr); 1933af53bab2SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",MatDenseRestoreColumn_MPIDense);CHKERRQ(ierr); 193438aed534SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)mat,MATMPIDENSE);CHKERRQ(ierr); 1935273d9f13SBarry Smith PetscFunctionReturn(0); 1936273d9f13SBarry Smith } 1937273d9f13SBarry Smith 1938209238afSKris Buschelman /*MC 1939637a0070SStefano Zampini MATMPIDENSECUDA - MATMPIDENSECUDA = "mpidensecuda" - A matrix type to be used for distributed dense matrices on GPUs. 1940637a0070SStefano Zampini 1941637a0070SStefano Zampini Options Database Keys: 1942637a0070SStefano Zampini . -mat_type mpidensecuda - sets the matrix type to "mpidensecuda" during a call to MatSetFromOptions() 1943637a0070SStefano Zampini 1944637a0070SStefano Zampini Level: beginner 1945637a0070SStefano Zampini 1946637a0070SStefano Zampini .seealso: 1947637a0070SStefano Zampini 1948637a0070SStefano Zampini M*/ 1949637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1950637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreate_MPIDenseCUDA(Mat B) 1951637a0070SStefano Zampini { 1952637a0070SStefano Zampini PetscErrorCode ierr; 1953637a0070SStefano Zampini 1954637a0070SStefano Zampini PetscFunctionBegin; 195505035670SJunchao Zhang ierr = PetscCUDAInitializeCheck();CHKERRQ(ierr); 1956637a0070SStefano Zampini ierr = MatCreate_MPIDense(B);CHKERRQ(ierr); 1957637a0070SStefano Zampini ierr = MatConvert_MPIDense_MPIDenseCUDA(B,MATMPIDENSECUDA,MAT_INPLACE_MATRIX,&B);CHKERRQ(ierr); 1958637a0070SStefano Zampini PetscFunctionReturn(0); 1959637a0070SStefano Zampini } 1960637a0070SStefano Zampini #endif 1961637a0070SStefano Zampini 1962637a0070SStefano Zampini /*MC 1963002d173eSKris Buschelman MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices. 1964209238afSKris Buschelman 1965209238afSKris Buschelman This matrix type is identical to MATSEQDENSE when constructed with a single process communicator, 1966209238afSKris Buschelman and MATMPIDENSE otherwise. 1967209238afSKris Buschelman 1968209238afSKris Buschelman Options Database Keys: 1969209238afSKris Buschelman . -mat_type dense - sets the matrix type to "dense" during a call to MatSetFromOptions() 1970209238afSKris Buschelman 1971209238afSKris Buschelman Level: beginner 1972209238afSKris Buschelman 197301b82886SBarry Smith 19746947451fSStefano Zampini .seealso: MATSEQDENSE,MATMPIDENSE,MATDENSECUDA 19756947451fSStefano Zampini M*/ 19766947451fSStefano Zampini 19776947451fSStefano Zampini /*MC 19786947451fSStefano Zampini MATDENSECUDA - MATDENSECUDA = "densecuda" - A matrix type to be used for dense matrices on GPUs. 19796947451fSStefano Zampini 19806947451fSStefano Zampini This matrix type is identical to MATSEQDENSECUDA when constructed with a single process communicator, 19816947451fSStefano Zampini and MATMPIDENSECUDA otherwise. 19826947451fSStefano Zampini 19836947451fSStefano Zampini Options Database Keys: 19846947451fSStefano Zampini . -mat_type densecuda - sets the matrix type to "densecuda" during a call to MatSetFromOptions() 19856947451fSStefano Zampini 19866947451fSStefano Zampini Level: beginner 19876947451fSStefano Zampini 19886947451fSStefano Zampini .seealso: MATSEQDENSECUDA,MATMPIDENSECUDA,MATDENSE 1989209238afSKris Buschelman M*/ 1990209238afSKris Buschelman 1991273d9f13SBarry Smith /*@C 1992273d9f13SBarry Smith MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries 1993273d9f13SBarry Smith 19948f490ea3SStefano Zampini Collective 1995273d9f13SBarry Smith 1996273d9f13SBarry Smith Input Parameters: 19971c4f3114SJed Brown . B - the matrix 19980298fd71SBarry Smith - data - optional location of matrix data. Set data=NULL for PETSc 1999273d9f13SBarry Smith to control all matrix memory allocation. 2000273d9f13SBarry Smith 2001273d9f13SBarry Smith Notes: 2002273d9f13SBarry Smith The dense format is fully compatible with standard Fortran 77 2003273d9f13SBarry Smith storage by columns. 2004273d9f13SBarry Smith 2005273d9f13SBarry Smith The data input variable is intended primarily for Fortran programmers 2006273d9f13SBarry Smith who wish to allocate their own matrix memory space. Most users should 20070298fd71SBarry Smith set data=NULL. 2008273d9f13SBarry Smith 2009273d9f13SBarry Smith Level: intermediate 2010273d9f13SBarry Smith 2011273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 2012273d9f13SBarry Smith @*/ 20131c4f3114SJed Brown PetscErrorCode MatMPIDenseSetPreallocation(Mat B,PetscScalar *data) 2014273d9f13SBarry Smith { 20154ac538c5SBarry Smith PetscErrorCode ierr; 2016273d9f13SBarry Smith 2017273d9f13SBarry Smith PetscFunctionBegin; 2018d5ea218eSStefano Zampini PetscValidHeaderSpecific(B,MAT_CLASSID,1); 20191c4f3114SJed Brown ierr = PetscTryMethod(B,"MatMPIDenseSetPreallocation_C",(Mat,PetscScalar*),(B,data));CHKERRQ(ierr); 2020273d9f13SBarry Smith PetscFunctionReturn(0); 2021273d9f13SBarry Smith } 2022273d9f13SBarry Smith 2023d3042a70SBarry Smith /*@ 2024637a0070SStefano Zampini MatDensePlaceArray - Allows one to replace the array in a dense matrix with an 2025d3042a70SBarry Smith array provided by the user. This is useful to avoid copying an array 2026d3042a70SBarry Smith into a matrix 2027d3042a70SBarry Smith 2028d3042a70SBarry Smith Not Collective 2029d3042a70SBarry Smith 2030d3042a70SBarry Smith Input Parameters: 2031d3042a70SBarry Smith + mat - the matrix 2032d3042a70SBarry Smith - array - the array in column major order 2033d3042a70SBarry Smith 2034d3042a70SBarry Smith Notes: 2035d3042a70SBarry Smith You can return to the original array with a call to MatDenseResetArray(). The user is responsible for freeing this array; it will not be 2036d3042a70SBarry Smith freed when the matrix is destroyed. 2037d3042a70SBarry Smith 2038d3042a70SBarry Smith Level: developer 2039d3042a70SBarry Smith 2040d3042a70SBarry Smith .seealso: MatDenseGetArray(), MatDenseResetArray(), VecPlaceArray(), VecGetArray(), VecRestoreArray(), VecReplaceArray(), VecResetArray() 2041d3042a70SBarry Smith 2042d3042a70SBarry Smith @*/ 2043637a0070SStefano Zampini PetscErrorCode MatDensePlaceArray(Mat mat,const PetscScalar *array) 2044d3042a70SBarry Smith { 2045d3042a70SBarry Smith PetscErrorCode ierr; 2046637a0070SStefano Zampini 2047d3042a70SBarry Smith PetscFunctionBegin; 2048d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2049d3042a70SBarry Smith ierr = PetscUseMethod(mat,"MatDensePlaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr); 2050d3042a70SBarry Smith ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 2051637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 2052637a0070SStefano Zampini mat->offloadmask = PETSC_OFFLOAD_CPU; 2053637a0070SStefano Zampini #endif 2054d3042a70SBarry Smith PetscFunctionReturn(0); 2055d3042a70SBarry Smith } 2056d3042a70SBarry Smith 2057d3042a70SBarry Smith /*@ 2058d3042a70SBarry Smith MatDenseResetArray - Resets the matrix array to that it previously had before the call to MatDensePlaceArray() 2059d3042a70SBarry Smith 2060d3042a70SBarry Smith Not Collective 2061d3042a70SBarry Smith 2062d3042a70SBarry Smith Input Parameters: 2063d3042a70SBarry Smith . mat - the matrix 2064d3042a70SBarry Smith 2065d3042a70SBarry Smith Notes: 2066d3042a70SBarry Smith You can only call this after a call to MatDensePlaceArray() 2067d3042a70SBarry Smith 2068d3042a70SBarry Smith Level: developer 2069d3042a70SBarry Smith 2070d3042a70SBarry Smith .seealso: MatDenseGetArray(), MatDensePlaceArray(), VecPlaceArray(), VecGetArray(), VecRestoreArray(), VecReplaceArray(), VecResetArray() 2071d3042a70SBarry Smith 2072d3042a70SBarry Smith @*/ 2073d3042a70SBarry Smith PetscErrorCode MatDenseResetArray(Mat mat) 2074d3042a70SBarry Smith { 2075d3042a70SBarry Smith PetscErrorCode ierr; 2076637a0070SStefano Zampini 2077d3042a70SBarry Smith PetscFunctionBegin; 2078d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2079d3042a70SBarry Smith ierr = PetscUseMethod(mat,"MatDenseResetArray_C",(Mat),(mat));CHKERRQ(ierr); 2080d3042a70SBarry Smith ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 2081d3042a70SBarry Smith PetscFunctionReturn(0); 2082d3042a70SBarry Smith } 2083d3042a70SBarry Smith 2084d5ea218eSStefano Zampini /*@ 2085d5ea218eSStefano Zampini MatDenseReplaceArray - Allows one to replace the array in a dense matrix with an 2086d5ea218eSStefano Zampini array provided by the user. This is useful to avoid copying an array 2087d5ea218eSStefano Zampini into a matrix 2088d5ea218eSStefano Zampini 2089d5ea218eSStefano Zampini Not Collective 2090d5ea218eSStefano Zampini 2091d5ea218eSStefano Zampini Input Parameters: 2092d5ea218eSStefano Zampini + mat - the matrix 2093d5ea218eSStefano Zampini - array - the array in column major order 2094d5ea218eSStefano Zampini 2095d5ea218eSStefano Zampini Notes: 2096d5ea218eSStefano Zampini The memory passed in MUST be obtained with PetscMalloc() and CANNOT be 2097d5ea218eSStefano Zampini freed by the user. It will be freed when the matrix is destroyed. 2098d5ea218eSStefano Zampini 2099d5ea218eSStefano Zampini Level: developer 2100d5ea218eSStefano Zampini 2101d5ea218eSStefano Zampini .seealso: MatDenseGetArray(), VecReplaceArray() 2102d5ea218eSStefano Zampini @*/ 2103d5ea218eSStefano Zampini PetscErrorCode MatDenseReplaceArray(Mat mat,const PetscScalar *array) 2104d5ea218eSStefano Zampini { 2105d5ea218eSStefano Zampini PetscErrorCode ierr; 2106d5ea218eSStefano Zampini 2107d5ea218eSStefano Zampini PetscFunctionBegin; 2108d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2109d5ea218eSStefano Zampini ierr = PetscUseMethod(mat,"MatDenseReplaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr); 2110d5ea218eSStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 2111d5ea218eSStefano Zampini #if defined(PETSC_HAVE_CUDA) 2112d5ea218eSStefano Zampini mat->offloadmask = PETSC_OFFLOAD_CPU; 2113d5ea218eSStefano Zampini #endif 2114d5ea218eSStefano Zampini PetscFunctionReturn(0); 2115d5ea218eSStefano Zampini } 2116d5ea218eSStefano Zampini 2117637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 21188965ea79SLois Curfman McInnes /*@C 2119637a0070SStefano Zampini MatDenseCUDAPlaceArray - Allows one to replace the GPU array in a dense matrix with an 2120637a0070SStefano Zampini array provided by the user. This is useful to avoid copying an array 2121637a0070SStefano Zampini into a matrix 2122637a0070SStefano Zampini 2123637a0070SStefano Zampini Not Collective 2124637a0070SStefano Zampini 2125637a0070SStefano Zampini Input Parameters: 2126637a0070SStefano Zampini + mat - the matrix 2127637a0070SStefano Zampini - array - the array in column major order 2128637a0070SStefano Zampini 2129637a0070SStefano Zampini Notes: 2130637a0070SStefano Zampini You can return to the original array with a call to MatDenseCUDAResetArray(). The user is responsible for freeing this array; it will not be 2131637a0070SStefano Zampini freed when the matrix is destroyed. The array must have been allocated with cudaMalloc(). 2132637a0070SStefano Zampini 2133637a0070SStefano Zampini Level: developer 2134637a0070SStefano Zampini 2135637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDAResetArray() 2136637a0070SStefano Zampini @*/ 2137637a0070SStefano Zampini PetscErrorCode MatDenseCUDAPlaceArray(Mat mat,const PetscScalar *array) 2138637a0070SStefano Zampini { 2139637a0070SStefano Zampini PetscErrorCode ierr; 2140637a0070SStefano Zampini 2141637a0070SStefano Zampini PetscFunctionBegin; 2142d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2143637a0070SStefano Zampini ierr = PetscUseMethod(mat,"MatDenseCUDAPlaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr); 2144637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 2145637a0070SStefano Zampini mat->offloadmask = PETSC_OFFLOAD_GPU; 2146637a0070SStefano Zampini PetscFunctionReturn(0); 2147637a0070SStefano Zampini } 2148637a0070SStefano Zampini 2149637a0070SStefano Zampini /*@C 2150637a0070SStefano Zampini MatDenseCUDAResetArray - Resets the matrix array to that it previously had before the call to MatDenseCUDAPlaceArray() 2151637a0070SStefano Zampini 2152637a0070SStefano Zampini Not Collective 2153637a0070SStefano Zampini 2154637a0070SStefano Zampini Input Parameters: 2155637a0070SStefano Zampini . mat - the matrix 2156637a0070SStefano Zampini 2157637a0070SStefano Zampini Notes: 2158637a0070SStefano Zampini You can only call this after a call to MatDenseCUDAPlaceArray() 2159637a0070SStefano Zampini 2160637a0070SStefano Zampini Level: developer 2161637a0070SStefano Zampini 2162637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDAPlaceArray() 2163637a0070SStefano Zampini 2164637a0070SStefano Zampini @*/ 2165637a0070SStefano Zampini PetscErrorCode MatDenseCUDAResetArray(Mat mat) 2166637a0070SStefano Zampini { 2167637a0070SStefano Zampini PetscErrorCode ierr; 2168637a0070SStefano Zampini 2169637a0070SStefano Zampini PetscFunctionBegin; 2170d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2171637a0070SStefano Zampini ierr = PetscUseMethod(mat,"MatDenseCUDAResetArray_C",(Mat),(mat));CHKERRQ(ierr); 2172637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 2173637a0070SStefano Zampini PetscFunctionReturn(0); 2174637a0070SStefano Zampini } 2175637a0070SStefano Zampini 2176637a0070SStefano Zampini /*@C 2177d5ea218eSStefano Zampini MatDenseCUDAReplaceArray - Allows one to replace the GPU array in a dense matrix with an 2178d5ea218eSStefano Zampini array provided by the user. This is useful to avoid copying an array 2179d5ea218eSStefano Zampini into a matrix 2180d5ea218eSStefano Zampini 2181d5ea218eSStefano Zampini Not Collective 2182d5ea218eSStefano Zampini 2183d5ea218eSStefano Zampini Input Parameters: 2184d5ea218eSStefano Zampini + mat - the matrix 2185d5ea218eSStefano Zampini - array - the array in column major order 2186d5ea218eSStefano Zampini 2187d5ea218eSStefano Zampini Notes: 2188d5ea218eSStefano Zampini This permanently replaces the GPU array and frees the memory associated with the old GPU array. 2189d5ea218eSStefano Zampini The memory passed in CANNOT be freed by the user. It will be freed 2190d5ea218eSStefano Zampini when the matrix is destroyed. The array should respect the matrix leading dimension. 2191d5ea218eSStefano Zampini 2192d5ea218eSStefano Zampini Level: developer 2193d5ea218eSStefano Zampini 2194d5ea218eSStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDAPlaceArray(), MatDenseCUDAResetArray() 2195d5ea218eSStefano Zampini @*/ 2196d5ea218eSStefano Zampini PetscErrorCode MatDenseCUDAReplaceArray(Mat mat,const PetscScalar *array) 2197d5ea218eSStefano Zampini { 2198d5ea218eSStefano Zampini PetscErrorCode ierr; 2199d5ea218eSStefano Zampini 2200d5ea218eSStefano Zampini PetscFunctionBegin; 2201d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2202d5ea218eSStefano Zampini ierr = PetscUseMethod(mat,"MatDenseCUDAReplaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr); 2203d5ea218eSStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 2204d5ea218eSStefano Zampini mat->offloadmask = PETSC_OFFLOAD_GPU; 2205d5ea218eSStefano Zampini PetscFunctionReturn(0); 2206d5ea218eSStefano Zampini } 2207d5ea218eSStefano Zampini 2208d5ea218eSStefano Zampini /*@C 2209637a0070SStefano Zampini MatDenseCUDAGetArrayWrite - Provides write access to the CUDA buffer inside a dense matrix. 2210637a0070SStefano Zampini 2211637a0070SStefano Zampini Not Collective 2212637a0070SStefano Zampini 2213637a0070SStefano Zampini Input Parameters: 2214637a0070SStefano Zampini . A - the matrix 2215637a0070SStefano Zampini 2216637a0070SStefano Zampini Output Parameters 2217637a0070SStefano Zampini . array - the GPU array in column major order 2218637a0070SStefano Zampini 2219637a0070SStefano Zampini Notes: 2220637a0070SStefano Zampini The data on the GPU may not be updated due to operations done on the CPU. If you need updated data, use MatDenseCUDAGetArray(). The array must be restored with MatDenseCUDARestoreArrayWrite() when no longer needed. 2221637a0070SStefano Zampini 2222637a0070SStefano Zampini Level: developer 2223637a0070SStefano Zampini 2224637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayRead(), MatDenseCUDARestoreArrayRead() 2225637a0070SStefano Zampini @*/ 2226637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArrayWrite(Mat A, PetscScalar **a) 2227637a0070SStefano Zampini { 2228637a0070SStefano Zampini PetscErrorCode ierr; 2229637a0070SStefano Zampini 2230637a0070SStefano Zampini PetscFunctionBegin; 2231d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2232637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDAGetArrayWrite_C",(Mat,PetscScalar**),(A,a));CHKERRQ(ierr); 2233637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr); 2234637a0070SStefano Zampini PetscFunctionReturn(0); 2235637a0070SStefano Zampini } 2236637a0070SStefano Zampini 2237637a0070SStefano Zampini /*@C 2238637a0070SStefano Zampini MatDenseCUDARestoreArrayWrite - Restore write access to the CUDA buffer inside a dense matrix previously obtained with MatDenseCUDAGetArrayWrite(). 2239637a0070SStefano Zampini 2240637a0070SStefano Zampini Not Collective 2241637a0070SStefano Zampini 2242637a0070SStefano Zampini Input Parameters: 2243637a0070SStefano Zampini + A - the matrix 2244637a0070SStefano Zampini - array - the GPU array in column major order 2245637a0070SStefano Zampini 2246637a0070SStefano Zampini Notes: 2247637a0070SStefano Zampini 2248637a0070SStefano Zampini Level: developer 2249637a0070SStefano Zampini 2250637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead(), MatDenseCUDAGetArrayRead() 2251637a0070SStefano Zampini @*/ 2252637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArrayWrite(Mat A, PetscScalar **a) 2253637a0070SStefano Zampini { 2254637a0070SStefano Zampini PetscErrorCode ierr; 2255637a0070SStefano Zampini 2256637a0070SStefano Zampini PetscFunctionBegin; 2257d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2258637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDARestoreArrayWrite_C",(Mat,PetscScalar**),(A,a));CHKERRQ(ierr); 2259637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr); 2260637a0070SStefano Zampini A->offloadmask = PETSC_OFFLOAD_GPU; 2261637a0070SStefano Zampini PetscFunctionReturn(0); 2262637a0070SStefano Zampini } 2263637a0070SStefano Zampini 2264637a0070SStefano Zampini /*@C 2265637a0070SStefano Zampini MatDenseCUDAGetArrayRead - Provides read-only access to the CUDA buffer inside a dense matrix. The array must be restored with MatDenseCUDARestoreArrayRead() when no longer needed. 2266637a0070SStefano Zampini 2267637a0070SStefano Zampini Not Collective 2268637a0070SStefano Zampini 2269637a0070SStefano Zampini Input Parameters: 2270637a0070SStefano Zampini . A - the matrix 2271637a0070SStefano Zampini 2272637a0070SStefano Zampini Output Parameters 2273637a0070SStefano Zampini . array - the GPU array in column major order 2274637a0070SStefano Zampini 2275637a0070SStefano Zampini Notes: 2276637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). 2277637a0070SStefano Zampini 2278637a0070SStefano Zampini Level: developer 2279637a0070SStefano Zampini 2280637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead() 2281637a0070SStefano Zampini @*/ 2282637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArrayRead(Mat A, const PetscScalar **a) 2283637a0070SStefano Zampini { 2284637a0070SStefano Zampini PetscErrorCode ierr; 2285637a0070SStefano Zampini 2286637a0070SStefano Zampini PetscFunctionBegin; 2287d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2288637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDAGetArrayRead_C",(Mat,const PetscScalar**),(A,a));CHKERRQ(ierr); 2289637a0070SStefano Zampini PetscFunctionReturn(0); 2290637a0070SStefano Zampini } 2291637a0070SStefano Zampini 2292637a0070SStefano Zampini /*@C 2293637a0070SStefano Zampini MatDenseCUDARestoreArrayRead - Restore read-only access to the CUDA buffer inside a dense matrix previously obtained with a call to MatDenseCUDAGetArrayRead(). 2294637a0070SStefano Zampini 2295637a0070SStefano Zampini Not Collective 2296637a0070SStefano Zampini 2297637a0070SStefano Zampini Input Parameters: 2298637a0070SStefano Zampini + A - the matrix 2299637a0070SStefano Zampini - array - the GPU array in column major order 2300637a0070SStefano Zampini 2301637a0070SStefano Zampini Notes: 2302637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). 2303637a0070SStefano Zampini 2304637a0070SStefano Zampini Level: developer 2305637a0070SStefano Zampini 2306637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDAGetArrayRead() 2307637a0070SStefano Zampini @*/ 2308637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArrayRead(Mat A, const PetscScalar **a) 2309637a0070SStefano Zampini { 2310637a0070SStefano Zampini PetscErrorCode ierr; 2311637a0070SStefano Zampini 2312637a0070SStefano Zampini PetscFunctionBegin; 2313637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDARestoreArrayRead_C",(Mat,const PetscScalar**),(A,a));CHKERRQ(ierr); 2314637a0070SStefano Zampini PetscFunctionReturn(0); 2315637a0070SStefano Zampini } 2316637a0070SStefano Zampini 2317637a0070SStefano Zampini /*@C 2318637a0070SStefano Zampini MatDenseCUDAGetArray - Provides access to the CUDA buffer inside a dense matrix. The array must be restored with MatDenseCUDARestoreArray() when no longer needed. 2319637a0070SStefano Zampini 2320637a0070SStefano Zampini Not Collective 2321637a0070SStefano Zampini 2322637a0070SStefano Zampini Input Parameters: 2323637a0070SStefano Zampini . A - the matrix 2324637a0070SStefano Zampini 2325637a0070SStefano Zampini Output Parameters 2326637a0070SStefano Zampini . array - the GPU array in column major order 2327637a0070SStefano Zampini 2328637a0070SStefano Zampini Notes: 2329637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). For read-only access, use MatDenseCUDAGetArrayRead(). 2330637a0070SStefano Zampini 2331637a0070SStefano Zampini Level: developer 2332637a0070SStefano Zampini 2333637a0070SStefano Zampini .seealso: MatDenseCUDAGetArrayRead(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead() 2334637a0070SStefano Zampini @*/ 2335637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArray(Mat A, PetscScalar **a) 2336637a0070SStefano Zampini { 2337637a0070SStefano Zampini PetscErrorCode ierr; 2338637a0070SStefano Zampini 2339637a0070SStefano Zampini PetscFunctionBegin; 2340d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2341637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDAGetArray_C",(Mat,PetscScalar**),(A,a));CHKERRQ(ierr); 2342637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr); 2343637a0070SStefano Zampini PetscFunctionReturn(0); 2344637a0070SStefano Zampini } 2345637a0070SStefano Zampini 2346637a0070SStefano Zampini /*@C 2347637a0070SStefano Zampini MatDenseCUDARestoreArray - Restore access to the CUDA buffer inside a dense matrix previously obtained with MatDenseCUDAGetArray(). 2348637a0070SStefano Zampini 2349637a0070SStefano Zampini Not Collective 2350637a0070SStefano Zampini 2351637a0070SStefano Zampini Input Parameters: 2352637a0070SStefano Zampini + A - the matrix 2353637a0070SStefano Zampini - array - the GPU array in column major order 2354637a0070SStefano Zampini 2355637a0070SStefano Zampini Notes: 2356637a0070SStefano Zampini 2357637a0070SStefano Zampini Level: developer 2358637a0070SStefano Zampini 2359637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead(), MatDenseCUDAGetArrayRead() 2360637a0070SStefano Zampini @*/ 2361637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArray(Mat A, PetscScalar **a) 2362637a0070SStefano Zampini { 2363637a0070SStefano Zampini PetscErrorCode ierr; 2364637a0070SStefano Zampini 2365637a0070SStefano Zampini PetscFunctionBegin; 2366d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2367637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDARestoreArray_C",(Mat,PetscScalar**),(A,a));CHKERRQ(ierr); 2368637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr); 2369637a0070SStefano Zampini A->offloadmask = PETSC_OFFLOAD_GPU; 2370637a0070SStefano Zampini PetscFunctionReturn(0); 2371637a0070SStefano Zampini } 2372637a0070SStefano Zampini #endif 2373637a0070SStefano Zampini 2374637a0070SStefano Zampini /*@C 2375637a0070SStefano Zampini MatCreateDense - Creates a matrix in dense format. 23768965ea79SLois Curfman McInnes 2377d083f849SBarry Smith Collective 2378db81eaa0SLois Curfman McInnes 23798965ea79SLois Curfman McInnes Input Parameters: 2380db81eaa0SLois Curfman McInnes + comm - MPI communicator 23818965ea79SLois Curfman McInnes . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2382db81eaa0SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 23838965ea79SLois Curfman McInnes . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 2384db81eaa0SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 23856cfe35ddSJose E. Roman - data - optional location of matrix data. Set data=NULL (PETSC_NULL_SCALAR for Fortran users) for PETSc 2386dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 23878965ea79SLois Curfman McInnes 23888965ea79SLois Curfman McInnes Output Parameter: 2389477f1c0bSLois Curfman McInnes . A - the matrix 23908965ea79SLois Curfman McInnes 2391b259b22eSLois Curfman McInnes Notes: 239239ddd567SLois Curfman McInnes The dense format is fully compatible with standard Fortran 77 239339ddd567SLois Curfman McInnes storage by columns. 23948965ea79SLois Curfman McInnes 239518f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 239618f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 23976cfe35ddSJose E. Roman set data=NULL (PETSC_NULL_SCALAR for Fortran users). 239818f449edSLois Curfman McInnes 23998965ea79SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 24008965ea79SLois Curfman McInnes (possibly both). 24018965ea79SLois Curfman McInnes 2402027ccd11SLois Curfman McInnes Level: intermediate 2403027ccd11SLois Curfman McInnes 240439ddd567SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 24058965ea79SLois Curfman McInnes @*/ 240669b1f4b7SBarry Smith PetscErrorCode MatCreateDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 24078965ea79SLois Curfman McInnes { 24086849ba73SBarry Smith PetscErrorCode ierr; 240913f74950SBarry Smith PetscMPIInt size; 24108965ea79SLois Curfman McInnes 24113a40ed3dSBarry Smith PetscFunctionBegin; 2412f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2413f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2414ffc4695bSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr); 2415273d9f13SBarry Smith if (size > 1) { 24168f490ea3SStefano Zampini PetscBool havedata = (PetscBool)!!data; 24178f490ea3SStefano Zampini 2418273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIDENSE);CHKERRQ(ierr); 2419273d9f13SBarry Smith ierr = MatMPIDenseSetPreallocation(*A,data);CHKERRQ(ierr); 24208f490ea3SStefano Zampini ierr = MPIU_Allreduce(MPI_IN_PLACE,&havedata,1,MPIU_BOOL,MPI_LOR,comm);CHKERRQ(ierr); 24218f490ea3SStefano Zampini if (havedata) { /* user provided data array, so no need to assemble */ 24226cfe35ddSJose E. Roman ierr = MatSetUpMultiply_MPIDense(*A);CHKERRQ(ierr); 24236cfe35ddSJose E. Roman (*A)->assembled = PETSC_TRUE; 24246cfe35ddSJose E. Roman } 2425273d9f13SBarry Smith } else { 2426273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr); 2427273d9f13SBarry Smith ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr); 24288c469469SLois Curfman McInnes } 24293a40ed3dSBarry Smith PetscFunctionReturn(0); 24308965ea79SLois Curfman McInnes } 24318965ea79SLois Curfman McInnes 2432637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 2433637a0070SStefano Zampini /*@C 2434637a0070SStefano Zampini MatCreateDenseCUDA - Creates a matrix in dense format using CUDA. 2435637a0070SStefano Zampini 2436637a0070SStefano Zampini Collective 2437637a0070SStefano Zampini 2438637a0070SStefano Zampini Input Parameters: 2439637a0070SStefano Zampini + comm - MPI communicator 2440637a0070SStefano Zampini . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2441637a0070SStefano Zampini . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 2442637a0070SStefano Zampini . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 2443637a0070SStefano Zampini . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 2444637a0070SStefano Zampini - data - optional location of GPU matrix data. Set data=NULL for PETSc 2445637a0070SStefano Zampini to control matrix memory allocation. 2446637a0070SStefano Zampini 2447637a0070SStefano Zampini Output Parameter: 2448637a0070SStefano Zampini . A - the matrix 2449637a0070SStefano Zampini 2450637a0070SStefano Zampini Notes: 2451637a0070SStefano Zampini 2452637a0070SStefano Zampini Level: intermediate 2453637a0070SStefano Zampini 2454637a0070SStefano Zampini .seealso: MatCreate(), MatCreateDense() 2455637a0070SStefano Zampini @*/ 2456637a0070SStefano Zampini PetscErrorCode MatCreateDenseCUDA(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 2457637a0070SStefano Zampini { 2458637a0070SStefano Zampini PetscErrorCode ierr; 2459637a0070SStefano Zampini PetscMPIInt size; 2460637a0070SStefano Zampini 2461637a0070SStefano Zampini PetscFunctionBegin; 2462637a0070SStefano Zampini ierr = MatCreate(comm,A);CHKERRQ(ierr); 2463637a0070SStefano Zampini PetscValidLogicalCollectiveBool(*A,!!data,6); 2464637a0070SStefano Zampini ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2465ffc4695bSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr); 2466637a0070SStefano Zampini if (size > 1) { 2467637a0070SStefano Zampini ierr = MatSetType(*A,MATMPIDENSECUDA);CHKERRQ(ierr); 2468637a0070SStefano Zampini ierr = MatMPIDenseCUDASetPreallocation(*A,data);CHKERRQ(ierr); 2469637a0070SStefano Zampini if (data) { /* user provided data array, so no need to assemble */ 2470637a0070SStefano Zampini ierr = MatSetUpMultiply_MPIDense(*A);CHKERRQ(ierr); 2471637a0070SStefano Zampini (*A)->assembled = PETSC_TRUE; 2472637a0070SStefano Zampini } 2473637a0070SStefano Zampini } else { 2474637a0070SStefano Zampini ierr = MatSetType(*A,MATSEQDENSECUDA);CHKERRQ(ierr); 2475637a0070SStefano Zampini ierr = MatSeqDenseCUDASetPreallocation(*A,data);CHKERRQ(ierr); 2476637a0070SStefano Zampini } 2477637a0070SStefano Zampini PetscFunctionReturn(0); 2478637a0070SStefano Zampini } 2479637a0070SStefano Zampini #endif 2480637a0070SStefano Zampini 24816849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat) 24828965ea79SLois Curfman McInnes { 24838965ea79SLois Curfman McInnes Mat mat; 24843501a2bdSLois Curfman McInnes Mat_MPIDense *a,*oldmat = (Mat_MPIDense*)A->data; 2485dfbe8321SBarry Smith PetscErrorCode ierr; 24868965ea79SLois Curfman McInnes 24873a40ed3dSBarry Smith PetscFunctionBegin; 2488f4259b30SLisandro Dalcin *newmat = NULL; 2489ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&mat);CHKERRQ(ierr); 2490d0f46423SBarry Smith ierr = MatSetSizes(mat,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 24917adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)A)->type_name);CHKERRQ(ierr); 2492834f8fabSBarry Smith a = (Mat_MPIDense*)mat->data; 24935aa7edbeSHong Zhang 2494d5f3da31SBarry Smith mat->factortype = A->factortype; 2495c456f294SBarry Smith mat->assembled = PETSC_TRUE; 2496273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 24978965ea79SLois Curfman McInnes 2498e0fa3b82SLois Curfman McInnes mat->insertmode = NOT_SET_VALUES; 24993782ba37SSatish Balay a->donotstash = oldmat->donotstash; 2500e04c1aa4SHong Zhang 25011e1e43feSBarry Smith ierr = PetscLayoutReference(A->rmap,&mat->rmap);CHKERRQ(ierr); 25021e1e43feSBarry Smith ierr = PetscLayoutReference(A->cmap,&mat->cmap);CHKERRQ(ierr); 25038965ea79SLois Curfman McInnes 25045609ef8eSBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 25053bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 2506637a0070SStefano Zampini ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 250701b82886SBarry Smith 25088965ea79SLois Curfman McInnes *newmat = mat; 25093a40ed3dSBarry Smith PetscFunctionReturn(0); 25108965ea79SLois Curfman McInnes } 25118965ea79SLois Curfman McInnes 2512eb91f321SVaclav Hapla PetscErrorCode MatLoad_MPIDense(Mat newMat, PetscViewer viewer) 2513eb91f321SVaclav Hapla { 2514eb91f321SVaclav Hapla PetscErrorCode ierr; 251587d5ce66SSatish Balay PetscBool isbinary; 251687d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 251787d5ce66SSatish Balay PetscBool ishdf5; 251887d5ce66SSatish Balay #endif 2519eb91f321SVaclav Hapla 2520eb91f321SVaclav Hapla PetscFunctionBegin; 2521eb91f321SVaclav Hapla PetscValidHeaderSpecific(newMat,MAT_CLASSID,1); 2522eb91f321SVaclav Hapla PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2); 2523eb91f321SVaclav Hapla /* force binary viewer to load .info file if it has not yet done so */ 2524eb91f321SVaclav Hapla ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr); 2525eb91f321SVaclav Hapla ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 252687d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 2527eb91f321SVaclav Hapla ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERHDF5, &ishdf5);CHKERRQ(ierr); 252887d5ce66SSatish Balay #endif 2529eb91f321SVaclav Hapla if (isbinary) { 25308491ab44SLisandro Dalcin ierr = MatLoad_Dense_Binary(newMat,viewer);CHKERRQ(ierr); 2531eb91f321SVaclav Hapla #if defined(PETSC_HAVE_HDF5) 253287d5ce66SSatish Balay } else if (ishdf5) { 2533eb91f321SVaclav Hapla ierr = MatLoad_Dense_HDF5(newMat,viewer);CHKERRQ(ierr); 2534eb91f321SVaclav Hapla #endif 253587d5ce66SSatish Balay } else SETERRQ2(PetscObjectComm((PetscObject)newMat),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)newMat)->type_name); 2536eb91f321SVaclav Hapla PetscFunctionReturn(0); 2537eb91f321SVaclav Hapla } 2538eb91f321SVaclav Hapla 25396718818eSStefano Zampini static PetscErrorCode MatEqual_MPIDense(Mat A,Mat B,PetscBool *flag) 25406e4ee0c6SHong Zhang { 25416e4ee0c6SHong Zhang Mat_MPIDense *matB = (Mat_MPIDense*)B->data,*matA = (Mat_MPIDense*)A->data; 25426e4ee0c6SHong Zhang Mat a,b; 2543ace3abfcSBarry Smith PetscBool flg; 25446e4ee0c6SHong Zhang PetscErrorCode ierr; 254590ace30eSBarry Smith 25466e4ee0c6SHong Zhang PetscFunctionBegin; 25476e4ee0c6SHong Zhang a = matA->A; 25486e4ee0c6SHong Zhang b = matB->A; 25496e4ee0c6SHong Zhang ierr = MatEqual(a,b,&flg);CHKERRQ(ierr); 2550b2566f29SBarry Smith ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 25516e4ee0c6SHong Zhang PetscFunctionReturn(0); 25526e4ee0c6SHong Zhang } 255390ace30eSBarry Smith 25546718818eSStefano Zampini PetscErrorCode MatDestroy_MatTransMatMult_MPIDense_MPIDense(void *data) 2555baa3c1c6SHong Zhang { 2556baa3c1c6SHong Zhang PetscErrorCode ierr; 25576718818eSStefano Zampini Mat_TransMatMultDense *atb = (Mat_TransMatMultDense *)data; 2558baa3c1c6SHong Zhang 2559baa3c1c6SHong Zhang PetscFunctionBegin; 2560637a0070SStefano Zampini ierr = PetscFree2(atb->sendbuf,atb->recvcounts);CHKERRQ(ierr); 2561637a0070SStefano Zampini ierr = MatDestroy(&atb->atb);CHKERRQ(ierr); 2562baa3c1c6SHong Zhang ierr = PetscFree(atb);CHKERRQ(ierr); 2563baa3c1c6SHong Zhang PetscFunctionReturn(0); 2564baa3c1c6SHong Zhang } 2565baa3c1c6SHong Zhang 25666718818eSStefano Zampini PetscErrorCode MatDestroy_MatMatTransMult_MPIDense_MPIDense(void *data) 2567cc48ffa7SToby Isaac { 2568cc48ffa7SToby Isaac PetscErrorCode ierr; 25696718818eSStefano Zampini Mat_MatTransMultDense *abt = (Mat_MatTransMultDense *)data; 2570cc48ffa7SToby Isaac 2571cc48ffa7SToby Isaac PetscFunctionBegin; 2572cc48ffa7SToby Isaac ierr = PetscFree2(abt->buf[0],abt->buf[1]);CHKERRQ(ierr); 2573faa55883SToby Isaac ierr = PetscFree2(abt->recvcounts,abt->recvdispls);CHKERRQ(ierr); 2574cc48ffa7SToby Isaac ierr = PetscFree(abt);CHKERRQ(ierr); 2575cc48ffa7SToby Isaac PetscFunctionReturn(0); 2576cc48ffa7SToby Isaac } 2577cc48ffa7SToby Isaac 25786718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 2579cb20be35SHong Zhang { 2580baa3c1c6SHong Zhang Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 25816718818eSStefano Zampini Mat_TransMatMultDense *atb; 2582cb20be35SHong Zhang PetscErrorCode ierr; 2583cb20be35SHong Zhang MPI_Comm comm; 25846718818eSStefano Zampini PetscMPIInt size,*recvcounts; 25856718818eSStefano Zampini PetscScalar *carray,*sendbuf; 2586637a0070SStefano Zampini const PetscScalar *atbarray; 2587d5017740SHong Zhang PetscInt i,cN=C->cmap->N,cM=C->rmap->N,proc,k,j; 2588e68c0b26SHong Zhang const PetscInt *ranges; 2589cb20be35SHong Zhang 2590cb20be35SHong Zhang PetscFunctionBegin; 25916718818eSStefano Zampini MatCheckProduct(C,3); 25926718818eSStefano Zampini if (!C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 25936718818eSStefano Zampini atb = (Mat_TransMatMultDense *)C->product->data; 25946718818eSStefano Zampini recvcounts = atb->recvcounts; 25956718818eSStefano Zampini sendbuf = atb->sendbuf; 25966718818eSStefano Zampini 2597cb20be35SHong Zhang ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 2598ffc4695bSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr); 2599e68c0b26SHong Zhang 2600c5ef1628SHong Zhang /* compute atbarray = aseq^T * bseq */ 2601637a0070SStefano Zampini ierr = MatTransposeMatMult(a->A,b->A,atb->atb ? MAT_REUSE_MATRIX : MAT_INITIAL_MATRIX,PETSC_DEFAULT,&atb->atb);CHKERRQ(ierr); 2602cb20be35SHong Zhang 2603cb20be35SHong Zhang ierr = MatGetOwnershipRanges(C,&ranges);CHKERRQ(ierr); 2604cb20be35SHong Zhang 2605660d5466SHong Zhang /* arrange atbarray into sendbuf */ 2606637a0070SStefano Zampini ierr = MatDenseGetArrayRead(atb->atb,&atbarray);CHKERRQ(ierr); 2607637a0070SStefano Zampini for (proc=0, k=0; proc<size; proc++) { 2608baa3c1c6SHong Zhang for (j=0; j<cN; j++) { 2609c5ef1628SHong Zhang for (i=ranges[proc]; i<ranges[proc+1]; i++) sendbuf[k++] = atbarray[i+j*cM]; 2610cb20be35SHong Zhang } 2611cb20be35SHong Zhang } 2612637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(atb->atb,&atbarray);CHKERRQ(ierr); 2613637a0070SStefano Zampini 2614c5ef1628SHong Zhang /* sum all atbarray to local values of C */ 26150acaeb71SStefano Zampini ierr = MatDenseGetArrayWrite(c->A,&carray);CHKERRQ(ierr); 2616ffc4695bSBarry Smith ierr = MPI_Reduce_scatter(sendbuf,carray,recvcounts,MPIU_SCALAR,MPIU_SUM,comm);CHKERRMPI(ierr); 26170acaeb71SStefano Zampini ierr = MatDenseRestoreArrayWrite(c->A,&carray);CHKERRQ(ierr); 26180acaeb71SStefano Zampini ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 26190acaeb71SStefano Zampini ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2620cb20be35SHong Zhang PetscFunctionReturn(0); 2621cb20be35SHong Zhang } 2622cb20be35SHong Zhang 26236718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat C) 2624cb20be35SHong Zhang { 2625cb20be35SHong Zhang PetscErrorCode ierr; 2626cb20be35SHong Zhang MPI_Comm comm; 2627baa3c1c6SHong Zhang PetscMPIInt size; 2628660d5466SHong Zhang PetscInt cm=A->cmap->n,cM,cN=B->cmap->N; 2629baa3c1c6SHong Zhang Mat_TransMatMultDense *atb; 26306718818eSStefano Zampini PetscBool cisdense; 26310acaeb71SStefano Zampini PetscInt i; 26320acaeb71SStefano Zampini const PetscInt *ranges; 2633cb20be35SHong Zhang 2634cb20be35SHong Zhang PetscFunctionBegin; 26356718818eSStefano Zampini MatCheckProduct(C,3); 26366718818eSStefano Zampini if (C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty"); 2637baa3c1c6SHong Zhang ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 2638cb20be35SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) { 2639cb20be35SHong Zhang SETERRQ4(comm,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != B (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 2640cb20be35SHong Zhang } 2641cb20be35SHong Zhang 26424222ddf1SHong Zhang /* create matrix product C */ 26436718818eSStefano Zampini ierr = MatSetSizes(C,cm,B->cmap->n,A->cmap->N,B->cmap->N);CHKERRQ(ierr); 26446718818eSStefano Zampini ierr = PetscObjectTypeCompareAny((PetscObject)C,&cisdense,MATMPIDENSE,MATMPIDENSECUDA,"");CHKERRQ(ierr); 26456718818eSStefano Zampini if (!cisdense) { 26466718818eSStefano Zampini ierr = MatSetType(C,((PetscObject)A)->type_name);CHKERRQ(ierr); 26476718818eSStefano Zampini } 264818992e5dSStefano Zampini ierr = MatSetUp(C);CHKERRQ(ierr); 2649baa3c1c6SHong Zhang 26504222ddf1SHong Zhang /* create data structure for reuse C */ 2651ffc4695bSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr); 2652baa3c1c6SHong Zhang ierr = PetscNew(&atb);CHKERRQ(ierr); 26534222ddf1SHong Zhang cM = C->rmap->N; 26546718818eSStefano Zampini ierr = PetscMalloc2((size_t)cM*(size_t)cN,&atb->sendbuf,size,&atb->recvcounts);CHKERRQ(ierr); 26550acaeb71SStefano Zampini ierr = MatGetOwnershipRanges(C,&ranges);CHKERRQ(ierr); 26560acaeb71SStefano Zampini for (i=0; i<size; i++) atb->recvcounts[i] = (ranges[i+1] - ranges[i])*cN; 2657baa3c1c6SHong Zhang 26586718818eSStefano Zampini C->product->data = atb; 26596718818eSStefano Zampini C->product->destroy = MatDestroy_MatTransMatMult_MPIDense_MPIDense; 2660cb20be35SHong Zhang PetscFunctionReturn(0); 2661cb20be35SHong Zhang } 2662cb20be35SHong Zhang 26634222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat A, Mat B, PetscReal fill, Mat C) 2664cb20be35SHong Zhang { 2665cb20be35SHong Zhang PetscErrorCode ierr; 2666cc48ffa7SToby Isaac MPI_Comm comm; 2667cc48ffa7SToby Isaac PetscMPIInt i, size; 2668cc48ffa7SToby Isaac PetscInt maxRows, bufsiz; 2669cc48ffa7SToby Isaac PetscMPIInt tag; 26704222ddf1SHong Zhang PetscInt alg; 2671cc48ffa7SToby Isaac Mat_MatTransMultDense *abt; 26724222ddf1SHong Zhang Mat_Product *product = C->product; 26734222ddf1SHong Zhang PetscBool flg; 2674cc48ffa7SToby Isaac 2675cc48ffa7SToby Isaac PetscFunctionBegin; 26766718818eSStefano Zampini MatCheckProduct(C,4); 26776718818eSStefano Zampini if (C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty"); 26784222ddf1SHong Zhang /* check local size of A and B */ 2679637a0070SStefano Zampini if (A->cmap->n != B->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local column dimensions are incompatible, A (%D) != B (%D)",A->cmap->n,B->cmap->n); 2680cc48ffa7SToby Isaac 26814222ddf1SHong Zhang ierr = PetscStrcmp(product->alg,"allgatherv",&flg);CHKERRQ(ierr); 2682637a0070SStefano Zampini alg = flg ? 0 : 1; 2683cc48ffa7SToby Isaac 26844222ddf1SHong Zhang /* setup matrix product C */ 26854222ddf1SHong Zhang ierr = MatSetSizes(C,A->rmap->n,B->rmap->n,A->rmap->N,B->rmap->N);CHKERRQ(ierr); 26864222ddf1SHong Zhang ierr = MatSetType(C,MATMPIDENSE);CHKERRQ(ierr); 268718992e5dSStefano Zampini ierr = MatSetUp(C);CHKERRQ(ierr); 26884222ddf1SHong Zhang ierr = PetscObjectGetNewTag((PetscObject)C,&tag);CHKERRQ(ierr); 26894222ddf1SHong Zhang 26904222ddf1SHong Zhang /* create data structure for reuse C */ 26914222ddf1SHong Zhang ierr = PetscObjectGetComm((PetscObject)C,&comm);CHKERRQ(ierr); 2692ffc4695bSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr); 2693cc48ffa7SToby Isaac ierr = PetscNew(&abt);CHKERRQ(ierr); 2694cc48ffa7SToby Isaac abt->tag = tag; 2695faa55883SToby Isaac abt->alg = alg; 2696faa55883SToby Isaac switch (alg) { 26974222ddf1SHong Zhang case 1: /* alg: "cyclic" */ 2698cc48ffa7SToby Isaac for (maxRows = 0, i = 0; i < size; i++) maxRows = PetscMax(maxRows, (B->rmap->range[i + 1] - B->rmap->range[i])); 2699cc48ffa7SToby Isaac bufsiz = A->cmap->N * maxRows; 2700cc48ffa7SToby Isaac ierr = PetscMalloc2(bufsiz,&(abt->buf[0]),bufsiz,&(abt->buf[1]));CHKERRQ(ierr); 2701faa55883SToby Isaac break; 27024222ddf1SHong Zhang default: /* alg: "allgatherv" */ 2703faa55883SToby Isaac ierr = PetscMalloc2(B->rmap->n * B->cmap->N, &(abt->buf[0]), B->rmap->N * B->cmap->N, &(abt->buf[1]));CHKERRQ(ierr); 2704faa55883SToby Isaac ierr = PetscMalloc2(size,&(abt->recvcounts),size+1,&(abt->recvdispls));CHKERRQ(ierr); 2705faa55883SToby Isaac for (i = 0; i <= size; i++) abt->recvdispls[i] = B->rmap->range[i] * A->cmap->N; 2706faa55883SToby Isaac for (i = 0; i < size; i++) abt->recvcounts[i] = abt->recvdispls[i + 1] - abt->recvdispls[i]; 2707faa55883SToby Isaac break; 2708faa55883SToby Isaac } 2709cc48ffa7SToby Isaac 27106718818eSStefano Zampini C->product->data = abt; 27116718818eSStefano Zampini C->product->destroy = MatDestroy_MatMatTransMult_MPIDense_MPIDense; 27124222ddf1SHong Zhang C->ops->mattransposemultnumeric = MatMatTransposeMultNumeric_MPIDense_MPIDense; 2713cc48ffa7SToby Isaac PetscFunctionReturn(0); 2714cc48ffa7SToby Isaac } 2715cc48ffa7SToby Isaac 2716faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(Mat A, Mat B, Mat C) 2717cc48ffa7SToby Isaac { 2718cc48ffa7SToby Isaac Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 27196718818eSStefano Zampini Mat_MatTransMultDense *abt; 2720cc48ffa7SToby Isaac PetscErrorCode ierr; 2721cc48ffa7SToby Isaac MPI_Comm comm; 2722cc48ffa7SToby Isaac PetscMPIInt rank,size, sendsiz, recvsiz, sendto, recvfrom, recvisfrom; 2723f4259b30SLisandro Dalcin PetscScalar *sendbuf, *recvbuf=NULL, *cv; 2724cc48ffa7SToby Isaac PetscInt i,cK=A->cmap->N,k,j,bn; 2725cc48ffa7SToby Isaac PetscScalar _DOne=1.0,_DZero=0.0; 2726637a0070SStefano Zampini const PetscScalar *av,*bv; 272723fff9afSBarry Smith PetscBLASInt cm, cn, ck, alda, blda = 0, clda; 2728cc48ffa7SToby Isaac MPI_Request reqs[2]; 2729cc48ffa7SToby Isaac const PetscInt *ranges; 2730cc48ffa7SToby Isaac 2731cc48ffa7SToby Isaac PetscFunctionBegin; 27326718818eSStefano Zampini MatCheckProduct(C,3); 27336718818eSStefano Zampini if (!C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 27346718818eSStefano Zampini abt = (Mat_MatTransMultDense*)C->product->data; 27356718818eSStefano Zampini ierr = PetscObjectGetComm((PetscObject)C,&comm);CHKERRQ(ierr); 2736ffc4695bSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRMPI(ierr); 2737ffc4695bSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr); 2738637a0070SStefano Zampini ierr = MatDenseGetArrayRead(a->A,&av);CHKERRQ(ierr); 2739637a0070SStefano Zampini ierr = MatDenseGetArrayRead(b->A,&bv);CHKERRQ(ierr); 27400acaeb71SStefano Zampini ierr = MatDenseGetArrayWrite(c->A,&cv);CHKERRQ(ierr); 2741637a0070SStefano Zampini ierr = MatDenseGetLDA(a->A,&i);CHKERRQ(ierr); 2742637a0070SStefano Zampini ierr = PetscBLASIntCast(i,&alda);CHKERRQ(ierr); 2743637a0070SStefano Zampini ierr = MatDenseGetLDA(b->A,&i);CHKERRQ(ierr); 2744637a0070SStefano Zampini ierr = PetscBLASIntCast(i,&blda);CHKERRQ(ierr); 2745637a0070SStefano Zampini ierr = MatDenseGetLDA(c->A,&i);CHKERRQ(ierr); 2746637a0070SStefano Zampini ierr = PetscBLASIntCast(i,&clda);CHKERRQ(ierr); 2747cc48ffa7SToby Isaac ierr = MatGetOwnershipRanges(B,&ranges);CHKERRQ(ierr); 2748cc48ffa7SToby Isaac bn = B->rmap->n; 2749637a0070SStefano Zampini if (blda == bn) { 2750637a0070SStefano Zampini sendbuf = (PetscScalar*)bv; 2751cc48ffa7SToby Isaac } else { 2752cc48ffa7SToby Isaac sendbuf = abt->buf[0]; 2753cc48ffa7SToby Isaac for (k = 0, i = 0; i < cK; i++) { 2754cc48ffa7SToby Isaac for (j = 0; j < bn; j++, k++) { 2755637a0070SStefano Zampini sendbuf[k] = bv[i * blda + j]; 2756cc48ffa7SToby Isaac } 2757cc48ffa7SToby Isaac } 2758cc48ffa7SToby Isaac } 2759cc48ffa7SToby Isaac if (size > 1) { 2760cc48ffa7SToby Isaac sendto = (rank + size - 1) % size; 2761cc48ffa7SToby Isaac recvfrom = (rank + size + 1) % size; 2762cc48ffa7SToby Isaac } else { 2763cc48ffa7SToby Isaac sendto = recvfrom = 0; 2764cc48ffa7SToby Isaac } 2765cc48ffa7SToby Isaac ierr = PetscBLASIntCast(cK,&ck);CHKERRQ(ierr); 2766cc48ffa7SToby Isaac ierr = PetscBLASIntCast(c->A->rmap->n,&cm);CHKERRQ(ierr); 2767cc48ffa7SToby Isaac recvisfrom = rank; 2768cc48ffa7SToby Isaac for (i = 0; i < size; i++) { 2769cc48ffa7SToby Isaac /* we have finished receiving in sending, bufs can be read/modified */ 2770cc48ffa7SToby Isaac PetscInt nextrecvisfrom = (recvisfrom + 1) % size; /* which process the next recvbuf will originate on */ 2771cc48ffa7SToby Isaac PetscInt nextbn = ranges[nextrecvisfrom + 1] - ranges[nextrecvisfrom]; 2772cc48ffa7SToby Isaac 2773cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2774cc48ffa7SToby Isaac /* start the cyclic sends from sendbuf, to recvbuf (which will switch to sendbuf) */ 2775cc48ffa7SToby Isaac sendsiz = cK * bn; 2776cc48ffa7SToby Isaac recvsiz = cK * nextbn; 2777cc48ffa7SToby Isaac recvbuf = (i & 1) ? abt->buf[0] : abt->buf[1]; 2778ffc4695bSBarry Smith ierr = MPI_Isend(sendbuf, sendsiz, MPIU_SCALAR, sendto, abt->tag, comm, &reqs[0]);CHKERRMPI(ierr); 2779ffc4695bSBarry Smith ierr = MPI_Irecv(recvbuf, recvsiz, MPIU_SCALAR, recvfrom, abt->tag, comm, &reqs[1]);CHKERRMPI(ierr); 2780cc48ffa7SToby Isaac } 2781cc48ffa7SToby Isaac 2782cc48ffa7SToby Isaac /* local aseq * sendbuf^T */ 2783cc48ffa7SToby Isaac ierr = PetscBLASIntCast(ranges[recvisfrom + 1] - ranges[recvisfrom], &cn);CHKERRQ(ierr); 278450ce3c9cSStefano Zampini if (cm && cn && ck) PetscStackCallBLAS("BLASgemm",BLASgemm_("N","T",&cm,&cn,&ck,&_DOne,av,&alda,sendbuf,&cn,&_DZero,cv + clda * ranges[recvisfrom],&clda)); 2785cc48ffa7SToby Isaac 2786cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2787cc48ffa7SToby Isaac /* wait for the sends and receives to complete, swap sendbuf and recvbuf */ 2788ffc4695bSBarry Smith ierr = MPI_Waitall(2, reqs, MPI_STATUSES_IGNORE);CHKERRMPI(ierr); 2789cc48ffa7SToby Isaac } 2790cc48ffa7SToby Isaac bn = nextbn; 2791cc48ffa7SToby Isaac recvisfrom = nextrecvisfrom; 2792cc48ffa7SToby Isaac sendbuf = recvbuf; 2793cc48ffa7SToby Isaac } 2794637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(a->A,&av);CHKERRQ(ierr); 2795637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(b->A,&bv);CHKERRQ(ierr); 27960acaeb71SStefano Zampini ierr = MatDenseRestoreArrayWrite(c->A,&cv);CHKERRQ(ierr); 27970acaeb71SStefano Zampini ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 27980acaeb71SStefano Zampini ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2799cc48ffa7SToby Isaac PetscFunctionReturn(0); 2800cc48ffa7SToby Isaac } 2801cc48ffa7SToby Isaac 2802faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(Mat A, Mat B, Mat C) 2803faa55883SToby Isaac { 2804faa55883SToby Isaac Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 28056718818eSStefano Zampini Mat_MatTransMultDense *abt; 2806faa55883SToby Isaac PetscErrorCode ierr; 2807faa55883SToby Isaac MPI_Comm comm; 2808637a0070SStefano Zampini PetscMPIInt size; 2809637a0070SStefano Zampini PetscScalar *cv, *sendbuf, *recvbuf; 2810637a0070SStefano Zampini const PetscScalar *av,*bv; 2811637a0070SStefano Zampini PetscInt blda,i,cK=A->cmap->N,k,j,bn; 2812faa55883SToby Isaac PetscScalar _DOne=1.0,_DZero=0.0; 2813637a0070SStefano Zampini PetscBLASInt cm, cn, ck, alda, clda; 2814faa55883SToby Isaac 2815faa55883SToby Isaac PetscFunctionBegin; 28166718818eSStefano Zampini MatCheckProduct(C,3); 28176718818eSStefano Zampini if (!C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 28186718818eSStefano Zampini abt = (Mat_MatTransMultDense*)C->product->data; 2819faa55883SToby Isaac ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 2820ffc4695bSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr); 2821637a0070SStefano Zampini ierr = MatDenseGetArrayRead(a->A,&av);CHKERRQ(ierr); 2822637a0070SStefano Zampini ierr = MatDenseGetArrayRead(b->A,&bv);CHKERRQ(ierr); 28230acaeb71SStefano Zampini ierr = MatDenseGetArrayWrite(c->A,&cv);CHKERRQ(ierr); 2824637a0070SStefano Zampini ierr = MatDenseGetLDA(a->A,&i);CHKERRQ(ierr); 2825637a0070SStefano Zampini ierr = PetscBLASIntCast(i,&alda);CHKERRQ(ierr); 2826637a0070SStefano Zampini ierr = MatDenseGetLDA(b->A,&blda);CHKERRQ(ierr); 2827637a0070SStefano Zampini ierr = MatDenseGetLDA(c->A,&i);CHKERRQ(ierr); 2828637a0070SStefano Zampini ierr = PetscBLASIntCast(i,&clda);CHKERRQ(ierr); 2829faa55883SToby Isaac /* copy transpose of B into buf[0] */ 2830faa55883SToby Isaac bn = B->rmap->n; 2831faa55883SToby Isaac sendbuf = abt->buf[0]; 2832faa55883SToby Isaac recvbuf = abt->buf[1]; 2833faa55883SToby Isaac for (k = 0, j = 0; j < bn; j++) { 2834faa55883SToby Isaac for (i = 0; i < cK; i++, k++) { 2835637a0070SStefano Zampini sendbuf[k] = bv[i * blda + j]; 2836faa55883SToby Isaac } 2837faa55883SToby Isaac } 2838637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(b->A,&bv);CHKERRQ(ierr); 2839ffc4695bSBarry Smith ierr = MPI_Allgatherv(sendbuf, bn * cK, MPIU_SCALAR, recvbuf, abt->recvcounts, abt->recvdispls, MPIU_SCALAR, comm);CHKERRMPI(ierr); 2840faa55883SToby Isaac ierr = PetscBLASIntCast(cK,&ck);CHKERRQ(ierr); 2841faa55883SToby Isaac ierr = PetscBLASIntCast(c->A->rmap->n,&cm);CHKERRQ(ierr); 2842faa55883SToby Isaac ierr = PetscBLASIntCast(c->A->cmap->n,&cn);CHKERRQ(ierr); 284350ce3c9cSStefano Zampini if (cm && cn && ck) PetscStackCallBLAS("BLASgemm",BLASgemm_("N","N",&cm,&cn,&ck,&_DOne,av,&alda,recvbuf,&ck,&_DZero,cv,&clda)); 2844637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(a->A,&av);CHKERRQ(ierr); 2845637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(b->A,&bv);CHKERRQ(ierr); 28460acaeb71SStefano Zampini ierr = MatDenseRestoreArrayWrite(c->A,&cv);CHKERRQ(ierr); 28470acaeb71SStefano Zampini ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 28480acaeb71SStefano Zampini ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2849faa55883SToby Isaac PetscFunctionReturn(0); 2850faa55883SToby Isaac } 2851faa55883SToby Isaac 2852faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat A, Mat B, Mat C) 2853faa55883SToby Isaac { 28546718818eSStefano Zampini Mat_MatTransMultDense *abt; 2855faa55883SToby Isaac PetscErrorCode ierr; 2856faa55883SToby Isaac 2857faa55883SToby Isaac PetscFunctionBegin; 28586718818eSStefano Zampini MatCheckProduct(C,3); 28596718818eSStefano Zampini if (!C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 28606718818eSStefano Zampini abt = (Mat_MatTransMultDense*)C->product->data; 2861faa55883SToby Isaac switch (abt->alg) { 2862faa55883SToby Isaac case 1: 2863faa55883SToby Isaac ierr = MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(A, B, C);CHKERRQ(ierr); 2864faa55883SToby Isaac break; 2865faa55883SToby Isaac default: 2866faa55883SToby Isaac ierr = MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(A, B, C);CHKERRQ(ierr); 2867faa55883SToby Isaac break; 2868faa55883SToby Isaac } 2869faa55883SToby Isaac PetscFunctionReturn(0); 2870faa55883SToby Isaac } 2871faa55883SToby Isaac 28726718818eSStefano Zampini PetscErrorCode MatDestroy_MatMatMult_MPIDense_MPIDense(void *data) 2873320f2790SHong Zhang { 2874320f2790SHong Zhang PetscErrorCode ierr; 28756718818eSStefano Zampini Mat_MatMultDense *ab = (Mat_MatMultDense*)data; 2876320f2790SHong Zhang 2877320f2790SHong Zhang PetscFunctionBegin; 2878320f2790SHong Zhang ierr = MatDestroy(&ab->Ce);CHKERRQ(ierr); 2879320f2790SHong Zhang ierr = MatDestroy(&ab->Ae);CHKERRQ(ierr); 2880320f2790SHong Zhang ierr = MatDestroy(&ab->Be);CHKERRQ(ierr); 2881320f2790SHong Zhang ierr = PetscFree(ab);CHKERRQ(ierr); 2882320f2790SHong Zhang PetscFunctionReturn(0); 2883320f2790SHong Zhang } 2884320f2790SHong Zhang 28855242a7b1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 2886320f2790SHong Zhang PetscErrorCode MatMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 2887320f2790SHong Zhang { 2888320f2790SHong Zhang PetscErrorCode ierr; 28896718818eSStefano Zampini Mat_MatMultDense *ab; 2890320f2790SHong Zhang 2891320f2790SHong Zhang PetscFunctionBegin; 28926718818eSStefano Zampini MatCheckProduct(C,3); 28936718818eSStefano Zampini if (!C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Missing product data"); 28946718818eSStefano Zampini ab = (Mat_MatMultDense*)C->product->data; 2895de0a22f0SHong Zhang ierr = MatConvert_MPIDense_Elemental(A,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Ae);CHKERRQ(ierr); 2896de0a22f0SHong Zhang ierr = MatConvert_MPIDense_Elemental(B,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Be);CHKERRQ(ierr); 28974222ddf1SHong Zhang ierr = MatMatMultNumeric_Elemental(ab->Ae,ab->Be,ab->Ce);CHKERRQ(ierr); 2898de0a22f0SHong Zhang ierr = MatConvert(ab->Ce,MATMPIDENSE,MAT_REUSE_MATRIX,&C);CHKERRQ(ierr); 2899320f2790SHong Zhang PetscFunctionReturn(0); 2900320f2790SHong Zhang } 2901320f2790SHong Zhang 29026718818eSStefano Zampini static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat C) 2903320f2790SHong Zhang { 2904320f2790SHong Zhang PetscErrorCode ierr; 2905320f2790SHong Zhang Mat Ae,Be,Ce; 2906320f2790SHong Zhang Mat_MatMultDense *ab; 2907320f2790SHong Zhang 2908320f2790SHong Zhang PetscFunctionBegin; 29096718818eSStefano Zampini MatCheckProduct(C,4); 29106718818eSStefano Zampini if (C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty"); 29114222ddf1SHong Zhang /* check local size of A and B */ 2912320f2790SHong Zhang if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend) { 2913378336b6SHong Zhang SETERRQ4(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != B (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 2914320f2790SHong Zhang } 2915320f2790SHong Zhang 29164222ddf1SHong Zhang /* create elemental matrices Ae and Be */ 29174222ddf1SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)A), &Ae);CHKERRQ(ierr); 29184222ddf1SHong Zhang ierr = MatSetSizes(Ae,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 29194222ddf1SHong Zhang ierr = MatSetType(Ae,MATELEMENTAL);CHKERRQ(ierr); 29204222ddf1SHong Zhang ierr = MatSetUp(Ae);CHKERRQ(ierr); 29214222ddf1SHong Zhang ierr = MatSetOption(Ae,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 2922320f2790SHong Zhang 29234222ddf1SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)B), &Be);CHKERRQ(ierr); 29244222ddf1SHong Zhang ierr = MatSetSizes(Be,PETSC_DECIDE,PETSC_DECIDE,B->rmap->N,B->cmap->N);CHKERRQ(ierr); 29254222ddf1SHong Zhang ierr = MatSetType(Be,MATELEMENTAL);CHKERRQ(ierr); 29264222ddf1SHong Zhang ierr = MatSetUp(Be);CHKERRQ(ierr); 29274222ddf1SHong Zhang ierr = MatSetOption(Be,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 2928320f2790SHong Zhang 29294222ddf1SHong Zhang /* compute symbolic Ce = Ae*Be */ 29304222ddf1SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)C),&Ce);CHKERRQ(ierr); 29314222ddf1SHong Zhang ierr = MatMatMultSymbolic_Elemental(Ae,Be,fill,Ce);CHKERRQ(ierr); 29324222ddf1SHong Zhang 29334222ddf1SHong Zhang /* setup C */ 29344222ddf1SHong Zhang ierr = MatSetSizes(C,A->rmap->n,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 29354222ddf1SHong Zhang ierr = MatSetType(C,MATDENSE);CHKERRQ(ierr); 29364222ddf1SHong Zhang ierr = MatSetUp(C);CHKERRQ(ierr); 2937320f2790SHong Zhang 2938320f2790SHong Zhang /* create data structure for reuse Cdense */ 2939320f2790SHong Zhang ierr = PetscNew(&ab);CHKERRQ(ierr); 2940320f2790SHong Zhang ab->Ae = Ae; 2941320f2790SHong Zhang ab->Be = Be; 2942320f2790SHong Zhang ab->Ce = Ce; 29436718818eSStefano Zampini 29446718818eSStefano Zampini C->product->data = ab; 29456718818eSStefano Zampini C->product->destroy = MatDestroy_MatMatMult_MPIDense_MPIDense; 29464222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIDense; 2947320f2790SHong Zhang PetscFunctionReturn(0); 2948320f2790SHong Zhang } 29494222ddf1SHong Zhang #endif 29504222ddf1SHong Zhang /* ----------------------------------------------- */ 29514222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 29524222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_AB(Mat C) 2953320f2790SHong Zhang { 2954320f2790SHong Zhang PetscFunctionBegin; 29554222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIDense; 29564222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 2957320f2790SHong Zhang PetscFunctionReturn(0); 2958320f2790SHong Zhang } 29595242a7b1SHong Zhang #endif 296086aefd0dSHong Zhang 29614222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_AtB(Mat C) 29624222ddf1SHong Zhang { 29634222ddf1SHong Zhang Mat_Product *product = C->product; 29644222ddf1SHong Zhang Mat A = product->A,B=product->B; 29654222ddf1SHong Zhang 29664222ddf1SHong Zhang PetscFunctionBegin; 29674222ddf1SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) 29684222ddf1SHong Zhang SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, (%D, %D) != (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 29696718818eSStefano Zampini C->ops->transposematmultsymbolic = MatTransposeMatMultSymbolic_MPIDense_MPIDense; 29706718818eSStefano Zampini C->ops->productsymbolic = MatProductSymbolic_AtB; 29714222ddf1SHong Zhang PetscFunctionReturn(0); 29724222ddf1SHong Zhang } 29734222ddf1SHong Zhang 29744222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_ABt(Mat C) 29754222ddf1SHong Zhang { 29764222ddf1SHong Zhang PetscErrorCode ierr; 29774222ddf1SHong Zhang Mat_Product *product = C->product; 29784222ddf1SHong Zhang const char *algTypes[2] = {"allgatherv","cyclic"}; 29794222ddf1SHong Zhang PetscInt alg,nalg = 2; 29804222ddf1SHong Zhang PetscBool flg = PETSC_FALSE; 29814222ddf1SHong Zhang 29824222ddf1SHong Zhang PetscFunctionBegin; 29834222ddf1SHong Zhang /* Set default algorithm */ 29844222ddf1SHong Zhang alg = 0; /* default is allgatherv */ 29854222ddf1SHong Zhang ierr = PetscStrcmp(product->alg,"default",&flg);CHKERRQ(ierr); 29864222ddf1SHong Zhang if (flg) { 29874222ddf1SHong Zhang ierr = MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]);CHKERRQ(ierr); 29884222ddf1SHong Zhang } 29894222ddf1SHong Zhang 29904222ddf1SHong Zhang /* Get runtime option */ 29914222ddf1SHong Zhang if (product->api_user) { 29924222ddf1SHong Zhang ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatMatTransposeMult","Mat");CHKERRQ(ierr); 29934222ddf1SHong Zhang ierr = PetscOptionsEList("-matmattransmult_mpidense_mpidense_via","Algorithmic approach","MatMatTransposeMult",algTypes,nalg,algTypes[alg],&alg,&flg);CHKERRQ(ierr); 29944222ddf1SHong Zhang ierr = PetscOptionsEnd();CHKERRQ(ierr); 29954222ddf1SHong Zhang } else { 29964222ddf1SHong Zhang ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatProduct_ABt","Mat");CHKERRQ(ierr); 29974222ddf1SHong Zhang ierr = PetscOptionsEList("-matproduct_abt_mpidense_mpidense_via","Algorithmic approach","MatProduct_ABt",algTypes,nalg,algTypes[alg],&alg,&flg);CHKERRQ(ierr); 29984222ddf1SHong Zhang ierr = PetscOptionsEnd();CHKERRQ(ierr); 29994222ddf1SHong Zhang } 30004222ddf1SHong Zhang if (flg) { 30014222ddf1SHong Zhang ierr = MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]);CHKERRQ(ierr); 30024222ddf1SHong Zhang } 30034222ddf1SHong Zhang 30044222ddf1SHong Zhang C->ops->mattransposemultsymbolic = MatMatTransposeMultSymbolic_MPIDense_MPIDense; 30054222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_ABt; 30064222ddf1SHong Zhang PetscFunctionReturn(0); 30074222ddf1SHong Zhang } 30084222ddf1SHong Zhang 30094222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense(Mat C) 30104222ddf1SHong Zhang { 30114222ddf1SHong Zhang PetscErrorCode ierr; 30124222ddf1SHong Zhang Mat_Product *product = C->product; 30134222ddf1SHong Zhang 30144222ddf1SHong Zhang PetscFunctionBegin; 30154222ddf1SHong Zhang switch (product->type) { 30164222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 30174222ddf1SHong Zhang case MATPRODUCT_AB: 30184222ddf1SHong Zhang ierr = MatProductSetFromOptions_MPIDense_AB(C);CHKERRQ(ierr); 30194222ddf1SHong Zhang break; 30204222ddf1SHong Zhang #endif 30214222ddf1SHong Zhang case MATPRODUCT_AtB: 30224222ddf1SHong Zhang ierr = MatProductSetFromOptions_MPIDense_AtB(C);CHKERRQ(ierr); 30234222ddf1SHong Zhang break; 30244222ddf1SHong Zhang case MATPRODUCT_ABt: 30254222ddf1SHong Zhang ierr = MatProductSetFromOptions_MPIDense_ABt(C);CHKERRQ(ierr); 30264222ddf1SHong Zhang break; 30276718818eSStefano Zampini default: 30286718818eSStefano Zampini break; 30294222ddf1SHong Zhang } 30304222ddf1SHong Zhang PetscFunctionReturn(0); 30314222ddf1SHong Zhang } 3032