1be1d678aSKris Buschelman 2ed3cc1f0SBarry Smith /* 3ed3cc1f0SBarry Smith Basic functions for basic parallel dense matrices. 4ed3cc1f0SBarry Smith */ 5ed3cc1f0SBarry Smith 6c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h> /*I "petscmat.h" I*/ 78949adfdSHong Zhang #include <../src/mat/impls/aij/mpi/mpiaij.h> 8baa3c1c6SHong Zhang #include <petscblaslapack.h> 98965ea79SLois Curfman McInnes 10ab92ecdeSBarry Smith /*@ 11ab92ecdeSBarry Smith 12ab92ecdeSBarry Smith MatDenseGetLocalMatrix - For a MATMPIDENSE or MATSEQDENSE matrix returns the sequential 13ab92ecdeSBarry Smith matrix that represents the operator. For sequential matrices it returns itself. 14ab92ecdeSBarry Smith 15ab92ecdeSBarry Smith Input Parameter: 16ab92ecdeSBarry Smith . A - the Seq or MPI dense matrix 17ab92ecdeSBarry Smith 18ab92ecdeSBarry Smith Output Parameter: 19ab92ecdeSBarry Smith . B - the inner matrix 20ab92ecdeSBarry Smith 218e6c10adSSatish Balay Level: intermediate 228e6c10adSSatish Balay 23ab92ecdeSBarry Smith @*/ 24ab92ecdeSBarry Smith PetscErrorCode MatDenseGetLocalMatrix(Mat A,Mat *B) 25ab92ecdeSBarry Smith { 26ab92ecdeSBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 27ab92ecdeSBarry Smith PetscErrorCode ierr; 28ace3abfcSBarry Smith PetscBool flg; 29ab92ecdeSBarry Smith 30ab92ecdeSBarry Smith PetscFunctionBegin; 31d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 32d5ea218eSStefano Zampini PetscValidPointer(B,2); 33f140bc17SStefano Zampini ierr = PetscObjectBaseTypeCompare((PetscObject)A,MATMPIDENSE,&flg);CHKERRQ(ierr); 342205254eSKarl Rupp if (flg) *B = mat->A; 35f140bc17SStefano Zampini else { 36f140bc17SStefano Zampini ierr = PetscObjectBaseTypeCompare((PetscObject)A,MATSEQDENSE,&flg);CHKERRQ(ierr); 37f140bc17SStefano Zampini if (!flg) SETERRQ1(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Not for matrix type %s",((PetscObject)A)->type_name); 38f140bc17SStefano Zampini *B = A; 39f140bc17SStefano Zampini } 40ab92ecdeSBarry Smith PetscFunctionReturn(0); 41ab92ecdeSBarry Smith } 42ab92ecdeSBarry Smith 43a76f77c3SStefano Zampini PetscErrorCode MatCopy_MPIDense(Mat A, Mat B, MatStructure s) 44a76f77c3SStefano Zampini { 45a76f77c3SStefano Zampini Mat_MPIDense *Amat = (Mat_MPIDense*)A->data; 46a76f77c3SStefano Zampini Mat_MPIDense *Bmat = (Mat_MPIDense*)B->data; 47a76f77c3SStefano Zampini PetscErrorCode ierr; 48a76f77c3SStefano Zampini 49a76f77c3SStefano Zampini PetscFunctionBegin; 50a76f77c3SStefano Zampini ierr = MatCopy(Amat->A,Bmat->A,s);CHKERRQ(ierr); 51a76f77c3SStefano Zampini PetscFunctionReturn(0); 52a76f77c3SStefano Zampini } 53a76f77c3SStefano Zampini 54ba8c8a56SBarry Smith PetscErrorCode MatGetRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 55ba8c8a56SBarry Smith { 56ba8c8a56SBarry Smith Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 57ba8c8a56SBarry Smith PetscErrorCode ierr; 58d0f46423SBarry Smith PetscInt lrow,rstart = A->rmap->rstart,rend = A->rmap->rend; 59ba8c8a56SBarry Smith 60ba8c8a56SBarry Smith PetscFunctionBegin; 61e7e72b3dSBarry Smith if (row < rstart || row >= rend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows"); 62ba8c8a56SBarry Smith lrow = row - rstart; 63ba8c8a56SBarry Smith ierr = MatGetRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v);CHKERRQ(ierr); 64ba8c8a56SBarry Smith PetscFunctionReturn(0); 65ba8c8a56SBarry Smith } 66ba8c8a56SBarry Smith 67637a0070SStefano Zampini PetscErrorCode MatRestoreRow_MPIDense(Mat A,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 68ba8c8a56SBarry Smith { 69637a0070SStefano Zampini Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 70ba8c8a56SBarry Smith PetscErrorCode ierr; 71637a0070SStefano Zampini PetscInt lrow,rstart = A->rmap->rstart,rend = A->rmap->rend; 72ba8c8a56SBarry Smith 73ba8c8a56SBarry Smith PetscFunctionBegin; 74637a0070SStefano Zampini if (row < rstart || row >= rend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"only local rows"); 75637a0070SStefano Zampini lrow = row - rstart; 76637a0070SStefano Zampini ierr = MatRestoreRow(mat->A,lrow,nz,(const PetscInt**)idx,(const PetscScalar**)v);CHKERRQ(ierr); 77ba8c8a56SBarry Smith PetscFunctionReturn(0); 78ba8c8a56SBarry Smith } 79ba8c8a56SBarry Smith 8011bd1e4dSLisandro Dalcin PetscErrorCode MatGetDiagonalBlock_MPIDense(Mat A,Mat *a) 810de54da6SSatish Balay { 820de54da6SSatish Balay Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 836849ba73SBarry Smith PetscErrorCode ierr; 84d0f46423SBarry Smith PetscInt m = A->rmap->n,rstart = A->rmap->rstart; 8587828ca2SBarry Smith PetscScalar *array; 860de54da6SSatish Balay MPI_Comm comm; 874b6ae80fSStefano Zampini PetscBool flg; 8811bd1e4dSLisandro Dalcin Mat B; 890de54da6SSatish Balay 900de54da6SSatish Balay PetscFunctionBegin; 914b6ae80fSStefano Zampini ierr = MatHasCongruentLayouts(A,&flg);CHKERRQ(ierr); 924b6ae80fSStefano Zampini if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only square matrices supported."); 9311bd1e4dSLisandro Dalcin ierr = PetscObjectQuery((PetscObject)A,"DiagonalBlock",(PetscObject*)&B);CHKERRQ(ierr); 94616b8fbbSStefano Zampini if (!B) { /* This should use MatDenseGetSubMatrix (not create), but we would need a call like MatRestoreDiagonalBlock */ 954b6ae80fSStefano Zampini 964b6ae80fSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)mdn->A,MATSEQDENSECUDA,&flg);CHKERRQ(ierr); 974b6ae80fSStefano Zampini if (flg) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Not coded for %s. Send an email to petsc-dev@mcs.anl.gov to request this feature",MATSEQDENSECUDA); 980de54da6SSatish Balay ierr = PetscObjectGetComm((PetscObject)(mdn->A),&comm);CHKERRQ(ierr); 9911bd1e4dSLisandro Dalcin ierr = MatCreate(comm,&B);CHKERRQ(ierr); 10011bd1e4dSLisandro Dalcin ierr = MatSetSizes(B,m,m,m,m);CHKERRQ(ierr); 10111bd1e4dSLisandro Dalcin ierr = MatSetType(B,((PetscObject)mdn->A)->type_name);CHKERRQ(ierr); 1024b6ae80fSStefano Zampini ierr = MatDenseGetArrayRead(mdn->A,(const PetscScalar**)&array);CHKERRQ(ierr); 10311bd1e4dSLisandro Dalcin ierr = MatSeqDenseSetPreallocation(B,array+m*rstart);CHKERRQ(ierr); 1044b6ae80fSStefano Zampini ierr = MatDenseRestoreArrayRead(mdn->A,(const PetscScalar**)&array);CHKERRQ(ierr); 10511bd1e4dSLisandro Dalcin ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 10611bd1e4dSLisandro Dalcin ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 10711bd1e4dSLisandro Dalcin ierr = PetscObjectCompose((PetscObject)A,"DiagonalBlock",(PetscObject)B);CHKERRQ(ierr); 10811bd1e4dSLisandro Dalcin *a = B; 10911bd1e4dSLisandro Dalcin ierr = MatDestroy(&B);CHKERRQ(ierr); 1102205254eSKarl Rupp } else *a = B; 1110de54da6SSatish Balay PetscFunctionReturn(0); 1120de54da6SSatish Balay } 1130de54da6SSatish Balay 11413f74950SBarry Smith PetscErrorCode MatSetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],const PetscScalar v[],InsertMode addv) 1158965ea79SLois Curfman McInnes { 11639b7565bSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)mat->data; 117dfbe8321SBarry Smith PetscErrorCode ierr; 118d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 119ace3abfcSBarry Smith PetscBool roworiented = A->roworiented; 1208965ea79SLois Curfman McInnes 1213a40ed3dSBarry Smith PetscFunctionBegin; 1228965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 1235ef9f2a5SBarry Smith if (idxm[i] < 0) continue; 124e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 1258965ea79SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 1268965ea79SLois Curfman McInnes row = idxm[i] - rstart; 12739b7565bSBarry Smith if (roworiented) { 12839b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,n,idxn,v+i*n,addv);CHKERRQ(ierr); 1293a40ed3dSBarry Smith } else { 1308965ea79SLois Curfman McInnes for (j=0; j<n; j++) { 1315ef9f2a5SBarry Smith if (idxn[j] < 0) continue; 132e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 13339b7565bSBarry Smith ierr = MatSetValues(A->A,1,&row,1,&idxn[j],v+i+j*m,addv);CHKERRQ(ierr); 13439b7565bSBarry Smith } 1358965ea79SLois Curfman McInnes } 1362205254eSKarl Rupp } else if (!A->donotstash) { 1375080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 13839b7565bSBarry Smith if (roworiented) { 139b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,idxm[i],n,idxn,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 140d36fbae8SSatish Balay } else { 141b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,idxm[i],n,idxn,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 14239b7565bSBarry Smith } 143b49de8d1SLois Curfman McInnes } 144b49de8d1SLois Curfman McInnes } 1453a40ed3dSBarry Smith PetscFunctionReturn(0); 146b49de8d1SLois Curfman McInnes } 147b49de8d1SLois Curfman McInnes 14813f74950SBarry Smith PetscErrorCode MatGetValues_MPIDense(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 149b49de8d1SLois Curfman McInnes { 150b49de8d1SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 151dfbe8321SBarry Smith PetscErrorCode ierr; 152d0f46423SBarry Smith PetscInt i,j,rstart = mat->rmap->rstart,rend = mat->rmap->rend,row; 153b49de8d1SLois Curfman McInnes 1543a40ed3dSBarry Smith PetscFunctionBegin; 155b49de8d1SLois Curfman McInnes for (i=0; i<m; i++) { 156e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); */ 157e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 158b49de8d1SLois Curfman McInnes if (idxm[i] >= rstart && idxm[i] < rend) { 159b49de8d1SLois Curfman McInnes row = idxm[i] - rstart; 160b49de8d1SLois Curfman McInnes for (j=0; j<n; j++) { 161e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); */ 162e7e72b3dSBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 163b49de8d1SLois Curfman McInnes ierr = MatGetValues(mdn->A,1,&row,1,&idxn[j],v+i*n+j);CHKERRQ(ierr); 164b49de8d1SLois Curfman McInnes } 165e7e72b3dSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 1668965ea79SLois Curfman McInnes } 1673a40ed3dSBarry Smith PetscFunctionReturn(0); 1688965ea79SLois Curfman McInnes } 1698965ea79SLois Curfman McInnes 17049a6ff4bSBarry Smith static PetscErrorCode MatDenseGetLDA_MPIDense(Mat A,PetscInt *lda) 17149a6ff4bSBarry Smith { 17249a6ff4bSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17349a6ff4bSBarry Smith PetscErrorCode ierr; 17449a6ff4bSBarry Smith 17549a6ff4bSBarry Smith PetscFunctionBegin; 17649a6ff4bSBarry Smith ierr = MatDenseGetLDA(a->A,lda);CHKERRQ(ierr); 17749a6ff4bSBarry Smith PetscFunctionReturn(0); 17849a6ff4bSBarry Smith } 17949a6ff4bSBarry Smith 180ad16ce7aSStefano Zampini static PetscErrorCode MatDenseSetLDA_MPIDense(Mat A,PetscInt lda) 181ad16ce7aSStefano Zampini { 182ad16ce7aSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 18317359960SJose E. Roman PetscBool iscuda; 184ad16ce7aSStefano Zampini PetscErrorCode ierr; 185ad16ce7aSStefano Zampini 186ad16ce7aSStefano Zampini PetscFunctionBegin; 18717359960SJose E. Roman if (!a->A) { 18817359960SJose E. Roman if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 18917359960SJose E. Roman ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr); 19017359960SJose E. Roman ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr); 19117359960SJose E. Roman ierr = MatCreate(PETSC_COMM_SELF,&a->A);CHKERRQ(ierr); 19217359960SJose E. Roman ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)a->A);CHKERRQ(ierr); 19317359960SJose E. Roman ierr = MatSetSizes(a->A,A->rmap->n,A->cmap->N,A->rmap->n,A->cmap->N);CHKERRQ(ierr); 19417359960SJose E. Roman ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIDENSECUDA,&iscuda);CHKERRQ(ierr); 19517359960SJose E. Roman ierr = MatSetType(a->A,iscuda ? MATSEQDENSECUDA : MATSEQDENSE);CHKERRQ(ierr); 19617359960SJose E. Roman } 197ad16ce7aSStefano Zampini ierr = MatDenseSetLDA(a->A,lda);CHKERRQ(ierr); 198ad16ce7aSStefano Zampini PetscFunctionReturn(0); 199ad16ce7aSStefano Zampini } 200ad16ce7aSStefano Zampini 201637a0070SStefano Zampini static PetscErrorCode MatDenseGetArray_MPIDense(Mat A,PetscScalar **array) 202ff14e315SSatish Balay { 203ff14e315SSatish Balay Mat_MPIDense *a = (Mat_MPIDense*)A->data; 204dfbe8321SBarry Smith PetscErrorCode ierr; 205ff14e315SSatish Balay 2063a40ed3dSBarry Smith PetscFunctionBegin; 207616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2088c778c55SBarry Smith ierr = MatDenseGetArray(a->A,array);CHKERRQ(ierr); 2093a40ed3dSBarry Smith PetscFunctionReturn(0); 210ff14e315SSatish Balay } 211ff14e315SSatish Balay 212637a0070SStefano Zampini static PetscErrorCode MatDenseGetArrayRead_MPIDense(Mat A,const PetscScalar **array) 2138572280aSBarry Smith { 2148572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 2158572280aSBarry Smith PetscErrorCode ierr; 2168572280aSBarry Smith 2178572280aSBarry Smith PetscFunctionBegin; 218616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2198572280aSBarry Smith ierr = MatDenseGetArrayRead(a->A,array);CHKERRQ(ierr); 2208572280aSBarry Smith PetscFunctionReturn(0); 2218572280aSBarry Smith } 2228572280aSBarry Smith 2236947451fSStefano Zampini static PetscErrorCode MatDenseGetArrayWrite_MPIDense(Mat A,PetscScalar **array) 2246947451fSStefano Zampini { 2256947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 2266947451fSStefano Zampini PetscErrorCode ierr; 2276947451fSStefano Zampini 2286947451fSStefano Zampini PetscFunctionBegin; 229616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 2306947451fSStefano Zampini ierr = MatDenseGetArrayWrite(a->A,array);CHKERRQ(ierr); 2316947451fSStefano Zampini PetscFunctionReturn(0); 2326947451fSStefano Zampini } 2336947451fSStefano Zampini 234637a0070SStefano Zampini static PetscErrorCode MatDensePlaceArray_MPIDense(Mat A,const PetscScalar *array) 235d3042a70SBarry Smith { 236d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 237d3042a70SBarry Smith PetscErrorCode ierr; 238d3042a70SBarry Smith 239d3042a70SBarry Smith PetscFunctionBegin; 240616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 241616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 242d3042a70SBarry Smith ierr = MatDensePlaceArray(a->A,array);CHKERRQ(ierr); 243d3042a70SBarry Smith PetscFunctionReturn(0); 244d3042a70SBarry Smith } 245d3042a70SBarry Smith 246d3042a70SBarry Smith static PetscErrorCode MatDenseResetArray_MPIDense(Mat A) 247d3042a70SBarry Smith { 248d3042a70SBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 249d3042a70SBarry Smith PetscErrorCode ierr; 250d3042a70SBarry Smith 251d3042a70SBarry Smith PetscFunctionBegin; 252616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 253616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 254d3042a70SBarry Smith ierr = MatDenseResetArray(a->A);CHKERRQ(ierr); 255d3042a70SBarry Smith PetscFunctionReturn(0); 256d3042a70SBarry Smith } 257d3042a70SBarry Smith 258d5ea218eSStefano Zampini static PetscErrorCode MatDenseReplaceArray_MPIDense(Mat A,const PetscScalar *array) 259d5ea218eSStefano Zampini { 260d5ea218eSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 261d5ea218eSStefano Zampini PetscErrorCode ierr; 262d5ea218eSStefano Zampini 263d5ea218eSStefano Zampini PetscFunctionBegin; 264616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 265616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 266d5ea218eSStefano Zampini ierr = MatDenseReplaceArray(a->A,array);CHKERRQ(ierr); 267d5ea218eSStefano Zampini PetscFunctionReturn(0); 268d5ea218eSStefano Zampini } 269d5ea218eSStefano Zampini 2707dae84e0SHong Zhang static PetscErrorCode MatCreateSubMatrix_MPIDense(Mat A,IS isrow,IS iscol,MatReuse scall,Mat *B) 271ca3fa75bSLois Curfman McInnes { 272ca3fa75bSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data,*newmatd; 2736849ba73SBarry Smith PetscErrorCode ierr; 274637a0070SStefano Zampini PetscInt lda,i,j,rstart,rend,nrows,ncols,Ncols,nlrows,nlcols; 2755d0c19d7SBarry Smith const PetscInt *irow,*icol; 276637a0070SStefano Zampini const PetscScalar *v; 277637a0070SStefano Zampini PetscScalar *bv; 278ca3fa75bSLois Curfman McInnes Mat newmat; 2794aa3045dSJed Brown IS iscol_local; 28042a884f0SBarry Smith MPI_Comm comm_is,comm_mat; 281ca3fa75bSLois Curfman McInnes 282ca3fa75bSLois Curfman McInnes PetscFunctionBegin; 28342a884f0SBarry Smith ierr = PetscObjectGetComm((PetscObject)A,&comm_mat);CHKERRQ(ierr); 28442a884f0SBarry Smith ierr = PetscObjectGetComm((PetscObject)iscol,&comm_is);CHKERRQ(ierr); 28542a884f0SBarry Smith if (comm_mat != comm_is) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_NOTSAMECOMM,"IS communicator must match matrix communicator"); 28642a884f0SBarry Smith 2874aa3045dSJed Brown ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 288ca3fa75bSLois Curfman McInnes ierr = ISGetIndices(isrow,&irow);CHKERRQ(ierr); 2894aa3045dSJed Brown ierr = ISGetIndices(iscol_local,&icol);CHKERRQ(ierr); 290b9b97703SBarry Smith ierr = ISGetLocalSize(isrow,&nrows);CHKERRQ(ierr); 291b9b97703SBarry Smith ierr = ISGetLocalSize(iscol,&ncols);CHKERRQ(ierr); 2924aa3045dSJed Brown ierr = ISGetSize(iscol,&Ncols);CHKERRQ(ierr); /* global number of columns, size of iscol_local */ 293ca3fa75bSLois Curfman McInnes 294ca3fa75bSLois Curfman McInnes /* No parallel redistribution currently supported! Should really check each index set 2957eba5e9cSLois Curfman McInnes to comfirm that it is OK. ... Currently supports only submatrix same partitioning as 2967eba5e9cSLois Curfman McInnes original matrix! */ 297ca3fa75bSLois Curfman McInnes 298ca3fa75bSLois Curfman McInnes ierr = MatGetLocalSize(A,&nlrows,&nlcols);CHKERRQ(ierr); 2997eba5e9cSLois Curfman McInnes ierr = MatGetOwnershipRange(A,&rstart,&rend);CHKERRQ(ierr); 300ca3fa75bSLois Curfman McInnes 301ca3fa75bSLois Curfman McInnes /* Check submatrix call */ 302ca3fa75bSLois Curfman McInnes if (scall == MAT_REUSE_MATRIX) { 303e32f2f54SBarry Smith /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Reused submatrix wrong size"); */ 3047eba5e9cSLois Curfman McInnes /* Really need to test rows and column sizes! */ 305ca3fa75bSLois Curfman McInnes newmat = *B; 306ca3fa75bSLois Curfman McInnes } else { 307ca3fa75bSLois Curfman McInnes /* Create and fill new matrix */ 308ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&newmat);CHKERRQ(ierr); 3094aa3045dSJed Brown ierr = MatSetSizes(newmat,nrows,ncols,PETSC_DECIDE,Ncols);CHKERRQ(ierr); 3107adad957SLisandro Dalcin ierr = MatSetType(newmat,((PetscObject)A)->type_name);CHKERRQ(ierr); 3110298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(newmat,NULL);CHKERRQ(ierr); 312ca3fa75bSLois Curfman McInnes } 313ca3fa75bSLois Curfman McInnes 314ca3fa75bSLois Curfman McInnes /* Now extract the data pointers and do the copy, column at a time */ 315ca3fa75bSLois Curfman McInnes newmatd = (Mat_MPIDense*)newmat->data; 316637a0070SStefano Zampini ierr = MatDenseGetArray(newmatd->A,&bv);CHKERRQ(ierr); 317637a0070SStefano Zampini ierr = MatDenseGetArrayRead(mat->A,&v);CHKERRQ(ierr); 318637a0070SStefano Zampini ierr = MatDenseGetLDA(mat->A,&lda);CHKERRQ(ierr); 3194aa3045dSJed Brown for (i=0; i<Ncols; i++) { 320637a0070SStefano Zampini const PetscScalar *av = v + lda*icol[i]; 321ca3fa75bSLois Curfman McInnes for (j=0; j<nrows; j++) { 3227eba5e9cSLois Curfman McInnes *bv++ = av[irow[j] - rstart]; 323ca3fa75bSLois Curfman McInnes } 324ca3fa75bSLois Curfman McInnes } 325637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(mat->A,&v);CHKERRQ(ierr); 326637a0070SStefano Zampini ierr = MatDenseRestoreArray(newmatd->A,&bv);CHKERRQ(ierr); 327ca3fa75bSLois Curfman McInnes 328ca3fa75bSLois Curfman McInnes /* Assemble the matrices so that the correct flags are set */ 329ca3fa75bSLois Curfman McInnes ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 330ca3fa75bSLois Curfman McInnes ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 331ca3fa75bSLois Curfman McInnes 332ca3fa75bSLois Curfman McInnes /* Free work space */ 333ca3fa75bSLois Curfman McInnes ierr = ISRestoreIndices(isrow,&irow);CHKERRQ(ierr); 3345bdf786aSShri Abhyankar ierr = ISRestoreIndices(iscol_local,&icol);CHKERRQ(ierr); 33532bb1f2dSLisandro Dalcin ierr = ISDestroy(&iscol_local);CHKERRQ(ierr); 336ca3fa75bSLois Curfman McInnes *B = newmat; 337ca3fa75bSLois Curfman McInnes PetscFunctionReturn(0); 338ca3fa75bSLois Curfman McInnes } 339ca3fa75bSLois Curfman McInnes 340637a0070SStefano Zampini PetscErrorCode MatDenseRestoreArray_MPIDense(Mat A,PetscScalar **array) 341ff14e315SSatish Balay { 34273a71a0fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 34373a71a0fSBarry Smith PetscErrorCode ierr; 34473a71a0fSBarry Smith 3453a40ed3dSBarry Smith PetscFunctionBegin; 3468c778c55SBarry Smith ierr = MatDenseRestoreArray(a->A,array);CHKERRQ(ierr); 3473a40ed3dSBarry Smith PetscFunctionReturn(0); 348ff14e315SSatish Balay } 349ff14e315SSatish Balay 350637a0070SStefano Zampini PetscErrorCode MatDenseRestoreArrayRead_MPIDense(Mat A,const PetscScalar **array) 3518572280aSBarry Smith { 3528572280aSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*)A->data; 3538572280aSBarry Smith PetscErrorCode ierr; 3548572280aSBarry Smith 3558572280aSBarry Smith PetscFunctionBegin; 3568572280aSBarry Smith ierr = MatDenseRestoreArrayRead(a->A,array);CHKERRQ(ierr); 3578572280aSBarry Smith PetscFunctionReturn(0); 3588572280aSBarry Smith } 3598572280aSBarry Smith 3606947451fSStefano Zampini PetscErrorCode MatDenseRestoreArrayWrite_MPIDense(Mat A,PetscScalar **array) 3616947451fSStefano Zampini { 3626947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 3636947451fSStefano Zampini PetscErrorCode ierr; 3646947451fSStefano Zampini 3656947451fSStefano Zampini PetscFunctionBegin; 3666947451fSStefano Zampini ierr = MatDenseRestoreArrayWrite(a->A,array);CHKERRQ(ierr); 3676947451fSStefano Zampini PetscFunctionReturn(0); 3686947451fSStefano Zampini } 3696947451fSStefano Zampini 370dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIDense(Mat mat,MatAssemblyType mode) 3718965ea79SLois Curfman McInnes { 37239ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 373dfbe8321SBarry Smith PetscErrorCode ierr; 37413f74950SBarry Smith PetscInt nstash,reallocs; 3758965ea79SLois Curfman McInnes 3763a40ed3dSBarry Smith PetscFunctionBegin; 3774067683fSStefano Zampini if (mdn->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 3788965ea79SLois Curfman McInnes 379d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 3808798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 381ae15b995SBarry Smith ierr = PetscInfo2(mdn->A,"Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 3823a40ed3dSBarry Smith PetscFunctionReturn(0); 3838965ea79SLois Curfman McInnes } 3848965ea79SLois Curfman McInnes 385dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIDense(Mat mat,MatAssemblyType mode) 3868965ea79SLois Curfman McInnes { 38739ddd567SLois Curfman McInnes Mat_MPIDense *mdn=(Mat_MPIDense*)mat->data; 3886849ba73SBarry Smith PetscErrorCode ierr; 38913f74950SBarry Smith PetscInt i,*row,*col,flg,j,rstart,ncols; 39013f74950SBarry Smith PetscMPIInt n; 39187828ca2SBarry Smith PetscScalar *val; 3928965ea79SLois Curfman McInnes 3933a40ed3dSBarry Smith PetscFunctionBegin; 394910cf402Sprj- if (!mdn->donotstash && !mat->nooffprocentries) { 3958965ea79SLois Curfman McInnes /* wait on receives */ 3967ef1d9bdSSatish Balay while (1) { 3978798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 3987ef1d9bdSSatish Balay if (!flg) break; 3998965ea79SLois Curfman McInnes 4007ef1d9bdSSatish Balay for (i=0; i<n;) { 4017ef1d9bdSSatish Balay /* Now identify the consecutive vals belonging to the same row */ 4022205254eSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 4032205254eSKarl Rupp if (row[j] != rstart) break; 4042205254eSKarl Rupp } 4057ef1d9bdSSatish Balay if (j < n) ncols = j-i; 4067ef1d9bdSSatish Balay else ncols = n-i; 4077ef1d9bdSSatish Balay /* Now assemble all these values with a single function call */ 4084b4eb8d3SJed Brown ierr = MatSetValues_MPIDense(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr); 4097ef1d9bdSSatish Balay i = j; 4108965ea79SLois Curfman McInnes } 4117ef1d9bdSSatish Balay } 4128798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 413910cf402Sprj- } 4148965ea79SLois Curfman McInnes 41539ddd567SLois Curfman McInnes ierr = MatAssemblyBegin(mdn->A,mode);CHKERRQ(ierr); 41639ddd567SLois Curfman McInnes ierr = MatAssemblyEnd(mdn->A,mode);CHKERRQ(ierr); 4178965ea79SLois Curfman McInnes 4186d4a8577SBarry Smith if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 41939ddd567SLois Curfman McInnes ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 4208965ea79SLois Curfman McInnes } 4213a40ed3dSBarry Smith PetscFunctionReturn(0); 4228965ea79SLois Curfman McInnes } 4238965ea79SLois Curfman McInnes 424dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIDense(Mat A) 4258965ea79SLois Curfman McInnes { 426dfbe8321SBarry Smith PetscErrorCode ierr; 42739ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 4283a40ed3dSBarry Smith 4293a40ed3dSBarry Smith PetscFunctionBegin; 4303a40ed3dSBarry Smith ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 4313a40ed3dSBarry Smith PetscFunctionReturn(0); 4328965ea79SLois Curfman McInnes } 4338965ea79SLois Curfman McInnes 434637a0070SStefano Zampini PetscErrorCode MatZeroRows_MPIDense(Mat A,PetscInt n,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 4358965ea79SLois Curfman McInnes { 43639ddd567SLois Curfman McInnes Mat_MPIDense *l = (Mat_MPIDense*)A->data; 4376849ba73SBarry Smith PetscErrorCode ierr; 438637a0070SStefano Zampini PetscInt i,len,*lrows; 439637a0070SStefano Zampini 440637a0070SStefano Zampini PetscFunctionBegin; 441637a0070SStefano Zampini /* get locally owned rows */ 442637a0070SStefano Zampini ierr = PetscLayoutMapLocal(A->rmap,n,rows,&len,&lrows,NULL);CHKERRQ(ierr); 443637a0070SStefano Zampini /* fix right hand side if needed */ 444637a0070SStefano Zampini if (x && b) { 44597b48c8fSBarry Smith const PetscScalar *xx; 44697b48c8fSBarry Smith PetscScalar *bb; 4478965ea79SLois Curfman McInnes 44897b48c8fSBarry Smith ierr = VecGetArrayRead(x, &xx);CHKERRQ(ierr); 449637a0070SStefano Zampini ierr = VecGetArrayWrite(b, &bb);CHKERRQ(ierr); 450637a0070SStefano Zampini for (i=0;i<len;++i) bb[lrows[i]] = diag*xx[lrows[i]]; 45197b48c8fSBarry Smith ierr = VecRestoreArrayRead(x, &xx);CHKERRQ(ierr); 452637a0070SStefano Zampini ierr = VecRestoreArrayWrite(b, &bb);CHKERRQ(ierr); 45397b48c8fSBarry Smith } 454637a0070SStefano Zampini ierr = MatZeroRows(l->A,len,lrows,0.0,NULL,NULL);CHKERRQ(ierr); 455e2eb51b1SBarry Smith if (diag != 0.0) { 456637a0070SStefano Zampini Vec d; 457b9679d65SBarry Smith 458637a0070SStefano Zampini ierr = MatCreateVecs(A,NULL,&d);CHKERRQ(ierr); 459637a0070SStefano Zampini ierr = VecSet(d,diag);CHKERRQ(ierr); 460637a0070SStefano Zampini ierr = MatDiagonalSet(A,d,INSERT_VALUES);CHKERRQ(ierr); 461637a0070SStefano Zampini ierr = VecDestroy(&d);CHKERRQ(ierr); 462b9679d65SBarry Smith } 463606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 4643a40ed3dSBarry Smith PetscFunctionReturn(0); 4658965ea79SLois Curfman McInnes } 4668965ea79SLois Curfman McInnes 467cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMult_SeqDense(Mat,Vec,Vec); 468cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultAdd_SeqDense(Mat,Vec,Vec,Vec); 469cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTranspose_SeqDense(Mat,Vec,Vec); 470cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatMultTransposeAdd_SeqDense(Mat,Vec,Vec,Vec); 471cc2e6a90SBarry Smith 472dfbe8321SBarry Smith PetscErrorCode MatMult_MPIDense(Mat mat,Vec xx,Vec yy) 4738965ea79SLois Curfman McInnes { 47439ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 475dfbe8321SBarry Smith PetscErrorCode ierr; 476637a0070SStefano Zampini const PetscScalar *ax; 477637a0070SStefano Zampini PetscScalar *ay; 478d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 479c456f294SBarry Smith 4803a40ed3dSBarry Smith PetscFunctionBegin; 481a256111fSJunchao Zhang ierr = VecGetArrayReadAndMemType(xx,&ax,&axmtype);CHKERRQ(ierr); 482a256111fSJunchao Zhang ierr = VecGetArrayAndMemType(mdn->lvec,&ay,&aymtype);CHKERRQ(ierr); 483ad227feaSJunchao Zhang ierr = PetscSFBcastWithMemTypeBegin(mdn->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPI_REPLACE);CHKERRQ(ierr); 484ad227feaSJunchao Zhang ierr = PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ax,ay,MPI_REPLACE);CHKERRQ(ierr); 485a256111fSJunchao Zhang ierr = VecRestoreArrayAndMemType(mdn->lvec,&ay);CHKERRQ(ierr); 486a256111fSJunchao Zhang ierr = VecRestoreArrayReadAndMemType(xx,&ax);CHKERRQ(ierr); 487637a0070SStefano Zampini ierr = (*mdn->A->ops->mult)(mdn->A,mdn->lvec,yy);CHKERRQ(ierr); 4883a40ed3dSBarry Smith PetscFunctionReturn(0); 4898965ea79SLois Curfman McInnes } 4908965ea79SLois Curfman McInnes 491dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIDense(Mat mat,Vec xx,Vec yy,Vec zz) 4928965ea79SLois Curfman McInnes { 49339ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 494dfbe8321SBarry Smith PetscErrorCode ierr; 495637a0070SStefano Zampini const PetscScalar *ax; 496637a0070SStefano Zampini PetscScalar *ay; 497d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 498c456f294SBarry Smith 4993a40ed3dSBarry Smith PetscFunctionBegin; 500a256111fSJunchao Zhang ierr = VecGetArrayReadAndMemType(xx,&ax,&axmtype);CHKERRQ(ierr); 501a256111fSJunchao Zhang ierr = VecGetArrayAndMemType(mdn->lvec,&ay,&aymtype);CHKERRQ(ierr); 502ad227feaSJunchao Zhang ierr = PetscSFBcastWithMemTypeBegin(mdn->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPI_REPLACE);CHKERRQ(ierr); 503ad227feaSJunchao Zhang ierr = PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ax,ay,MPI_REPLACE);CHKERRQ(ierr); 504a256111fSJunchao Zhang ierr = VecRestoreArrayAndMemType(mdn->lvec,&ay);CHKERRQ(ierr); 505a256111fSJunchao Zhang ierr = VecRestoreArrayReadAndMemType(xx,&ax);CHKERRQ(ierr); 506637a0070SStefano Zampini ierr = (*mdn->A->ops->multadd)(mdn->A,mdn->lvec,yy,zz);CHKERRQ(ierr); 5073a40ed3dSBarry Smith PetscFunctionReturn(0); 5088965ea79SLois Curfman McInnes } 5098965ea79SLois Curfman McInnes 510dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIDense(Mat A,Vec xx,Vec yy) 511096963f5SLois Curfman McInnes { 512096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 513dfbe8321SBarry Smith PetscErrorCode ierr; 514637a0070SStefano Zampini const PetscScalar *ax; 515637a0070SStefano Zampini PetscScalar *ay; 516d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 517096963f5SLois Curfman McInnes 5183a40ed3dSBarry Smith PetscFunctionBegin; 519637a0070SStefano Zampini ierr = VecSet(yy,0.0);CHKERRQ(ierr); 520637a0070SStefano Zampini ierr = (*a->A->ops->multtranspose)(a->A,xx,a->lvec);CHKERRQ(ierr); 521a256111fSJunchao Zhang ierr = VecGetArrayReadAndMemType(a->lvec,&ax,&axmtype);CHKERRQ(ierr); 522a256111fSJunchao Zhang ierr = VecGetArrayAndMemType(yy,&ay,&aymtype);CHKERRQ(ierr); 523d0295fc0SJunchao Zhang ierr = PetscSFReduceWithMemTypeBegin(a->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPIU_SUM);CHKERRQ(ierr); 524637a0070SStefano Zampini ierr = PetscSFReduceEnd(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM);CHKERRQ(ierr); 525a256111fSJunchao Zhang ierr = VecRestoreArrayReadAndMemType(a->lvec,&ax);CHKERRQ(ierr); 526a256111fSJunchao Zhang ierr = VecRestoreArrayAndMemType(yy,&ay);CHKERRQ(ierr); 5273a40ed3dSBarry Smith PetscFunctionReturn(0); 528096963f5SLois Curfman McInnes } 529096963f5SLois Curfman McInnes 530dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIDense(Mat A,Vec xx,Vec yy,Vec zz) 531096963f5SLois Curfman McInnes { 532096963f5SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 533dfbe8321SBarry Smith PetscErrorCode ierr; 534637a0070SStefano Zampini const PetscScalar *ax; 535637a0070SStefano Zampini PetscScalar *ay; 536d0295fc0SJunchao Zhang PetscMemType axmtype,aymtype; 537096963f5SLois Curfman McInnes 5383a40ed3dSBarry Smith PetscFunctionBegin; 5393501a2bdSLois Curfman McInnes ierr = VecCopy(yy,zz);CHKERRQ(ierr); 540637a0070SStefano Zampini ierr = (*a->A->ops->multtranspose)(a->A,xx,a->lvec);CHKERRQ(ierr); 541a256111fSJunchao Zhang ierr = VecGetArrayReadAndMemType(a->lvec,&ax,&axmtype);CHKERRQ(ierr); 542a256111fSJunchao Zhang ierr = VecGetArrayAndMemType(zz,&ay,&aymtype);CHKERRQ(ierr); 543d0295fc0SJunchao Zhang ierr = PetscSFReduceWithMemTypeBegin(a->Mvctx,MPIU_SCALAR,axmtype,ax,aymtype,ay,MPIU_SUM);CHKERRQ(ierr); 544637a0070SStefano Zampini ierr = PetscSFReduceEnd(a->Mvctx,MPIU_SCALAR,ax,ay,MPIU_SUM);CHKERRQ(ierr); 545a256111fSJunchao Zhang ierr = VecRestoreArrayReadAndMemType(a->lvec,&ax);CHKERRQ(ierr); 546a256111fSJunchao Zhang ierr = VecRestoreArrayAndMemType(zz,&ay);CHKERRQ(ierr); 5473a40ed3dSBarry Smith PetscFunctionReturn(0); 548096963f5SLois Curfman McInnes } 549096963f5SLois Curfman McInnes 550dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIDense(Mat A,Vec v) 5518965ea79SLois Curfman McInnes { 55239ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 553dfbe8321SBarry Smith PetscErrorCode ierr; 554637a0070SStefano Zampini PetscInt lda,len,i,n,m = A->rmap->n,radd; 55587828ca2SBarry Smith PetscScalar *x,zero = 0.0; 556637a0070SStefano Zampini const PetscScalar *av; 557ed3cc1f0SBarry Smith 5583a40ed3dSBarry Smith PetscFunctionBegin; 5592dcb1b2aSMatthew Knepley ierr = VecSet(v,zero);CHKERRQ(ierr); 5601ebc52fbSHong Zhang ierr = VecGetArray(v,&x);CHKERRQ(ierr); 561096963f5SLois Curfman McInnes ierr = VecGetSize(v,&n);CHKERRQ(ierr); 562e32f2f54SBarry Smith if (n != A->rmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Nonconforming mat and vec"); 563d0f46423SBarry Smith len = PetscMin(a->A->rmap->n,a->A->cmap->n); 564d0f46423SBarry Smith radd = A->rmap->rstart*m; 565637a0070SStefano Zampini ierr = MatDenseGetArrayRead(a->A,&av);CHKERRQ(ierr); 566637a0070SStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 56744cd7ae7SLois Curfman McInnes for (i=0; i<len; i++) { 568637a0070SStefano Zampini x[i] = av[radd + i*lda + i]; 569096963f5SLois Curfman McInnes } 570637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(a->A,&av);CHKERRQ(ierr); 5711ebc52fbSHong Zhang ierr = VecRestoreArray(v,&x);CHKERRQ(ierr); 5723a40ed3dSBarry Smith PetscFunctionReturn(0); 5738965ea79SLois Curfman McInnes } 5748965ea79SLois Curfman McInnes 575dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIDense(Mat mat) 5768965ea79SLois Curfman McInnes { 5773501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 578dfbe8321SBarry Smith PetscErrorCode ierr; 579ed3cc1f0SBarry Smith 5803a40ed3dSBarry Smith PetscFunctionBegin; 581aa482453SBarry Smith #if defined(PETSC_USE_LOG) 582d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D, Cols=%D",mat->rmap->N,mat->cmap->N); 5838965ea79SLois Curfman McInnes #endif 5848798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 585616b8fbbSStefano Zampini if (mdn->vecinuse) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 586616b8fbbSStefano Zampini if (mdn->matinuse) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 5876bf464f9SBarry Smith ierr = MatDestroy(&mdn->A);CHKERRQ(ierr); 5886bf464f9SBarry Smith ierr = VecDestroy(&mdn->lvec);CHKERRQ(ierr); 589637a0070SStefano Zampini ierr = PetscSFDestroy(&mdn->Mvctx);CHKERRQ(ierr); 5906947451fSStefano Zampini ierr = VecDestroy(&mdn->cvec);CHKERRQ(ierr); 5915ea7661aSPierre Jolivet ierr = MatDestroy(&mdn->cmat);CHKERRQ(ierr); 59201b82886SBarry Smith 593bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 594f4259b30SLisandro Dalcin ierr = PetscObjectChangeTypeName((PetscObject)mat,NULL);CHKERRQ(ierr); 5958baccfbdSHong Zhang 59649a6ff4bSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",NULL);CHKERRQ(ierr); 597ad16ce7aSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseSetLDA_C",NULL);CHKERRQ(ierr); 5988baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",NULL);CHKERRQ(ierr); 5998572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",NULL);CHKERRQ(ierr); 6008572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",NULL);CHKERRQ(ierr); 6018572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",NULL);CHKERRQ(ierr); 6026947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayWrite_C",NULL);CHKERRQ(ierr); 6036947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayWrite_C",NULL);CHKERRQ(ierr); 604d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",NULL);CHKERRQ(ierr); 605d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",NULL);CHKERRQ(ierr); 606d5ea218eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseReplaceArray_C",NULL);CHKERRQ(ierr); 6074e29119aSPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 6084e29119aSPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_mpiaij_C",NULL);CHKERRQ(ierr); 6098baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 6108baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",NULL);CHKERRQ(ierr); 6118baccfbdSHong Zhang #endif 612d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 613d24d4204SJose E. Roman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_scalapack_C",NULL);CHKERRQ(ierr); 614d24d4204SJose E. Roman #endif 615bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",NULL);CHKERRQ(ierr); 6164222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaij_mpidense_C",NULL);CHKERRQ(ierr); 6174222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaij_C",NULL);CHKERRQ(ierr); 6186718818eSStefano Zampini #if defined (PETSC_HAVE_CUDA) 6196718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaijcusparse_mpidense_C",NULL);CHKERRQ(ierr); 6206718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaijcusparse_C",NULL);CHKERRQ(ierr); 6216718818eSStefano Zampini #endif 62286aefd0dSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",NULL);CHKERRQ(ierr); 62386aefd0dSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",NULL);CHKERRQ(ierr); 6246947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",NULL);CHKERRQ(ierr); 6256947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",NULL);CHKERRQ(ierr); 6266947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",NULL);CHKERRQ(ierr); 6276947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",NULL);CHKERRQ(ierr); 6286947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",NULL);CHKERRQ(ierr); 6296947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",NULL);CHKERRQ(ierr); 6305ea7661aSPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetSubMatrix_C",NULL);CHKERRQ(ierr); 6315ea7661aSPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreSubMatrix_C",NULL);CHKERRQ(ierr); 6323a40ed3dSBarry Smith PetscFunctionReturn(0); 6338965ea79SLois Curfman McInnes } 63439ddd567SLois Curfman McInnes 63552c5f739Sprj- PETSC_INTERN PetscErrorCode MatView_SeqDense(Mat,PetscViewer); 63652c5f739Sprj- 6379804daf3SBarry Smith #include <petscdraw.h> 6386849ba73SBarry Smith static PetscErrorCode MatView_MPIDense_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 6398965ea79SLois Curfman McInnes { 64039ddd567SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)mat->data; 641dfbe8321SBarry Smith PetscErrorCode ierr; 642616b8fbbSStefano Zampini PetscMPIInt rank; 64319fd82e9SBarry Smith PetscViewerType vtype; 644ace3abfcSBarry Smith PetscBool iascii,isdraw; 645b0a32e0cSBarry Smith PetscViewer sviewer; 646f3ef73ceSBarry Smith PetscViewerFormat format; 6478965ea79SLois Curfman McInnes 6483a40ed3dSBarry Smith PetscFunctionBegin; 649ffc4695bSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRMPI(ierr); 650251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 651251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 65232077d6dSBarry Smith if (iascii) { 653b0a32e0cSBarry Smith ierr = PetscViewerGetType(viewer,&vtype);CHKERRQ(ierr); 654b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 655456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 6564e220ebcSLois Curfman McInnes MatInfo info; 657888f2ed8SSatish Balay ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 6581575c14dSBarry Smith ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr); 6597b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer," [%d] local rows %D nz %D nz alloced %D mem %D \n",rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,(PetscInt)info.memory);CHKERRQ(ierr); 660b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 6611575c14dSBarry Smith ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr); 662637a0070SStefano Zampini ierr = PetscSFView(mdn->Mvctx,viewer);CHKERRQ(ierr); 6633a40ed3dSBarry Smith PetscFunctionReturn(0); 664fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 6653a40ed3dSBarry Smith PetscFunctionReturn(0); 6668965ea79SLois Curfman McInnes } 667f1af5d2fSBarry Smith } else if (isdraw) { 668b0a32e0cSBarry Smith PetscDraw draw; 669ace3abfcSBarry Smith PetscBool isnull; 670f1af5d2fSBarry Smith 671b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 672b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 673f1af5d2fSBarry Smith if (isnull) PetscFunctionReturn(0); 674f1af5d2fSBarry Smith } 67577ed5343SBarry Smith 6767da1fb6eSBarry Smith { 6778965ea79SLois Curfman McInnes /* assemble the entire matrix onto first processor. */ 6788965ea79SLois Curfman McInnes Mat A; 679d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,m,row,i,nz; 680ba8c8a56SBarry Smith PetscInt *cols; 681ba8c8a56SBarry Smith PetscScalar *vals; 6828965ea79SLois Curfman McInnes 683ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr); 6848965ea79SLois Curfman McInnes if (!rank) { 685f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 6863a40ed3dSBarry Smith } else { 687f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 6888965ea79SLois Curfman McInnes } 6897adad957SLisandro Dalcin /* Since this is a temporary matrix, MATMPIDENSE instead of ((PetscObject)A)->type_name here is probably acceptable. */ 690878740d9SKris Buschelman ierr = MatSetType(A,MATMPIDENSE);CHKERRQ(ierr); 6910298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(A,NULL);CHKERRQ(ierr); 6923bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr); 6938965ea79SLois Curfman McInnes 69439ddd567SLois Curfman McInnes /* Copy the matrix ... This isn't the most efficient means, 69539ddd567SLois Curfman McInnes but it's quick for now */ 69651022da4SBarry Smith A->insertmode = INSERT_VALUES; 6972205254eSKarl Rupp 6982205254eSKarl Rupp row = mat->rmap->rstart; 6992205254eSKarl Rupp m = mdn->A->rmap->n; 7008965ea79SLois Curfman McInnes for (i=0; i<m; i++) { 701ba8c8a56SBarry Smith ierr = MatGetRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 702ba8c8a56SBarry Smith ierr = MatSetValues_MPIDense(A,1,&row,nz,cols,vals,INSERT_VALUES);CHKERRQ(ierr); 703ba8c8a56SBarry Smith ierr = MatRestoreRow_MPIDense(mat,row,&nz,&cols,&vals);CHKERRQ(ierr); 70439ddd567SLois Curfman McInnes row++; 7058965ea79SLois Curfman McInnes } 7068965ea79SLois Curfman McInnes 7076d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 7086d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 7093f08860eSBarry Smith ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 710b9b97703SBarry Smith if (!rank) { 7111a9d3c3cSBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPIDense*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr); 7127da1fb6eSBarry Smith ierr = MatView_SeqDense(((Mat_MPIDense*)(A->data))->A,sviewer);CHKERRQ(ierr); 7138965ea79SLois Curfman McInnes } 7143f08860eSBarry Smith ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 715b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 7166bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 7178965ea79SLois Curfman McInnes } 7183a40ed3dSBarry Smith PetscFunctionReturn(0); 7198965ea79SLois Curfman McInnes } 7208965ea79SLois Curfman McInnes 721dfbe8321SBarry Smith PetscErrorCode MatView_MPIDense(Mat mat,PetscViewer viewer) 7228965ea79SLois Curfman McInnes { 723dfbe8321SBarry Smith PetscErrorCode ierr; 724ace3abfcSBarry Smith PetscBool iascii,isbinary,isdraw,issocket; 7258965ea79SLois Curfman McInnes 726433994e6SBarry Smith PetscFunctionBegin; 727251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 728251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 729251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 730251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 7310f5bd95cSBarry Smith 73232077d6dSBarry Smith if (iascii || issocket || isdraw) { 733f1af5d2fSBarry Smith ierr = MatView_MPIDense_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 7340f5bd95cSBarry Smith } else if (isbinary) { 7358491ab44SLisandro Dalcin ierr = MatView_Dense_Binary(mat,viewer);CHKERRQ(ierr); 73611aeaf0aSBarry Smith } 7373a40ed3dSBarry Smith PetscFunctionReturn(0); 7388965ea79SLois Curfman McInnes } 7398965ea79SLois Curfman McInnes 740dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIDense(Mat A,MatInfoType flag,MatInfo *info) 7418965ea79SLois Curfman McInnes { 7423501a2bdSLois Curfman McInnes Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 7433501a2bdSLois Curfman McInnes Mat mdn = mat->A; 744dfbe8321SBarry Smith PetscErrorCode ierr; 7453966268fSBarry Smith PetscLogDouble isend[5],irecv[5]; 7468965ea79SLois Curfman McInnes 7473a40ed3dSBarry Smith PetscFunctionBegin; 7484e220ebcSLois Curfman McInnes info->block_size = 1.0; 7492205254eSKarl Rupp 7504e220ebcSLois Curfman McInnes ierr = MatGetInfo(mdn,MAT_LOCAL,info);CHKERRQ(ierr); 7512205254eSKarl Rupp 7524e220ebcSLois Curfman McInnes isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 7534e220ebcSLois Curfman McInnes isend[3] = info->memory; isend[4] = info->mallocs; 7548965ea79SLois Curfman McInnes if (flag == MAT_LOCAL) { 7554e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 7564e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 7574e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 7584e220ebcSLois Curfman McInnes info->memory = isend[3]; 7594e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 7608965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_MAX) { 761820f2d46SBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_MAX,PetscObjectComm((PetscObject)A));CHKERRMPI(ierr); 7622205254eSKarl Rupp 7634e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7644e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7654e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7664e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7674e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7688965ea79SLois Curfman McInnes } else if (flag == MAT_GLOBAL_SUM) { 769820f2d46SBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_SUM,PetscObjectComm((PetscObject)A));CHKERRMPI(ierr); 7702205254eSKarl Rupp 7714e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7724e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7734e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7744e220ebcSLois Curfman McInnes info->memory = irecv[3]; 7754e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 7768965ea79SLois Curfman McInnes } 7774e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 7784e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 7794e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 7803a40ed3dSBarry Smith PetscFunctionReturn(0); 7818965ea79SLois Curfman McInnes } 7828965ea79SLois Curfman McInnes 783ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIDense(Mat A,MatOption op,PetscBool flg) 7848965ea79SLois Curfman McInnes { 78539ddd567SLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 786dfbe8321SBarry Smith PetscErrorCode ierr; 7878965ea79SLois Curfman McInnes 7883a40ed3dSBarry Smith PetscFunctionBegin; 78912c028f9SKris Buschelman switch (op) { 790512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 79112c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 79212c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 79343674050SBarry Smith MatCheckPreallocated(A,1); 7944e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 79512c028f9SKris Buschelman break; 79612c028f9SKris Buschelman case MAT_ROW_ORIENTED: 79743674050SBarry Smith MatCheckPreallocated(A,1); 7984e0d8c25SBarry Smith a->roworiented = flg; 7994e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 80012c028f9SKris Buschelman break; 8018c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 80213fa8e87SLisandro Dalcin case MAT_KEEP_NONZERO_PATTERN: 80312c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 804071fcb05SBarry Smith case MAT_SORTED_FULL: 805290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 80612c028f9SKris Buschelman break; 80712c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 8084e0d8c25SBarry Smith a->donotstash = flg; 80912c028f9SKris Buschelman break; 81077e54ba9SKris Buschelman case MAT_SYMMETRIC: 81177e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 8129a4540c5SBarry Smith case MAT_HERMITIAN: 8139a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 814600fe468SBarry Smith case MAT_IGNORE_LOWER_TRIANGULAR: 8155d7aebe8SStefano Zampini case MAT_IGNORE_ZERO_ENTRIES: 816290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 81777e54ba9SKris Buschelman break; 81812c028f9SKris Buschelman default: 819e32f2f54SBarry Smith SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"unknown option %s",MatOptions[op]); 8203a40ed3dSBarry Smith } 8213a40ed3dSBarry Smith PetscFunctionReturn(0); 8228965ea79SLois Curfman McInnes } 8238965ea79SLois Curfman McInnes 824dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIDense(Mat A,Vec ll,Vec rr) 8255b2fa520SLois Curfman McInnes { 8265b2fa520SLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 827637a0070SStefano Zampini const PetscScalar *l; 828637a0070SStefano Zampini PetscScalar x,*v,*vv,*r; 829dfbe8321SBarry Smith PetscErrorCode ierr; 830637a0070SStefano Zampini PetscInt i,j,s2a,s3a,s2,s3,m=mdn->A->rmap->n,n=mdn->A->cmap->n,lda; 8315b2fa520SLois Curfman McInnes 8325b2fa520SLois Curfman McInnes PetscFunctionBegin; 833637a0070SStefano Zampini ierr = MatDenseGetArray(mdn->A,&vv);CHKERRQ(ierr); 834637a0070SStefano Zampini ierr = MatDenseGetLDA(mdn->A,&lda);CHKERRQ(ierr); 83572d926a5SLois Curfman McInnes ierr = MatGetLocalSize(A,&s2,&s3);CHKERRQ(ierr); 8365b2fa520SLois Curfman McInnes if (ll) { 83772d926a5SLois Curfman McInnes ierr = VecGetLocalSize(ll,&s2a);CHKERRQ(ierr); 838637a0070SStefano Zampini if (s2a != s2) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Left scaling vector non-conforming local size, %D != %D", s2a, s2); 839bca11509SBarry Smith ierr = VecGetArrayRead(ll,&l);CHKERRQ(ierr); 8405b2fa520SLois Curfman McInnes for (i=0; i<m; i++) { 8415b2fa520SLois Curfman McInnes x = l[i]; 842637a0070SStefano Zampini v = vv + i; 843637a0070SStefano Zampini for (j=0; j<n; j++) { (*v) *= x; v+= lda;} 8445b2fa520SLois Curfman McInnes } 845bca11509SBarry Smith ierr = VecRestoreArrayRead(ll,&l);CHKERRQ(ierr); 846637a0070SStefano Zampini ierr = PetscLogFlops(1.0*n*m);CHKERRQ(ierr); 8475b2fa520SLois Curfman McInnes } 8485b2fa520SLois Curfman McInnes if (rr) { 849637a0070SStefano Zampini const PetscScalar *ar; 850637a0070SStefano Zampini 851175be7b4SMatthew Knepley ierr = VecGetLocalSize(rr,&s3a);CHKERRQ(ierr); 852e32f2f54SBarry Smith if (s3a != s3) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Right scaling vec non-conforming local size, %d != %d.", s3a, s3); 853637a0070SStefano Zampini ierr = VecGetArrayRead(rr,&ar);CHKERRQ(ierr); 854637a0070SStefano Zampini ierr = VecGetArray(mdn->lvec,&r);CHKERRQ(ierr); 855ad227feaSJunchao Zhang ierr = PetscSFBcastBegin(mdn->Mvctx,MPIU_SCALAR,ar,r,MPI_REPLACE);CHKERRQ(ierr); 856ad227feaSJunchao Zhang ierr = PetscSFBcastEnd(mdn->Mvctx,MPIU_SCALAR,ar,r,MPI_REPLACE);CHKERRQ(ierr); 857637a0070SStefano Zampini ierr = VecRestoreArrayRead(rr,&ar);CHKERRQ(ierr); 8585b2fa520SLois Curfman McInnes for (i=0; i<n; i++) { 8595b2fa520SLois Curfman McInnes x = r[i]; 860637a0070SStefano Zampini v = vv + i*lda; 8612205254eSKarl Rupp for (j=0; j<m; j++) (*v++) *= x; 8625b2fa520SLois Curfman McInnes } 863637a0070SStefano Zampini ierr = VecRestoreArray(mdn->lvec,&r);CHKERRQ(ierr); 864637a0070SStefano Zampini ierr = PetscLogFlops(1.0*n*m);CHKERRQ(ierr); 8655b2fa520SLois Curfman McInnes } 866637a0070SStefano Zampini ierr = MatDenseRestoreArray(mdn->A,&vv);CHKERRQ(ierr); 8675b2fa520SLois Curfman McInnes PetscFunctionReturn(0); 8685b2fa520SLois Curfman McInnes } 8695b2fa520SLois Curfman McInnes 870dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIDense(Mat A,NormType type,PetscReal *nrm) 871096963f5SLois Curfman McInnes { 8723501a2bdSLois Curfman McInnes Mat_MPIDense *mdn = (Mat_MPIDense*)A->data; 873dfbe8321SBarry Smith PetscErrorCode ierr; 87413f74950SBarry Smith PetscInt i,j; 875616b8fbbSStefano Zampini PetscMPIInt size; 876329f5518SBarry Smith PetscReal sum = 0.0; 877637a0070SStefano Zampini const PetscScalar *av,*v; 8783501a2bdSLois Curfman McInnes 8793a40ed3dSBarry Smith PetscFunctionBegin; 880637a0070SStefano Zampini ierr = MatDenseGetArrayRead(mdn->A,&av);CHKERRQ(ierr); 881637a0070SStefano Zampini v = av; 882ffc4695bSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRMPI(ierr); 883616b8fbbSStefano Zampini if (size == 1) { 884064f8208SBarry Smith ierr = MatNorm(mdn->A,type,nrm);CHKERRQ(ierr); 8853501a2bdSLois Curfman McInnes } else { 8863501a2bdSLois Curfman McInnes if (type == NORM_FROBENIUS) { 887d0f46423SBarry Smith for (i=0; i<mdn->A->cmap->n*mdn->A->rmap->n; i++) { 888329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 8893501a2bdSLois Curfman McInnes } 890820f2d46SBarry Smith ierr = MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRMPI(ierr); 8918f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 892dc0b31edSSatish Balay ierr = PetscLogFlops(2.0*mdn->A->cmap->n*mdn->A->rmap->n);CHKERRQ(ierr); 8933a40ed3dSBarry Smith } else if (type == NORM_1) { 894329f5518SBarry Smith PetscReal *tmp,*tmp2; 895580bdb30SBarry Smith ierr = PetscCalloc2(A->cmap->N,&tmp,A->cmap->N,&tmp2);CHKERRQ(ierr); 896064f8208SBarry Smith *nrm = 0.0; 897637a0070SStefano Zampini v = av; 898d0f46423SBarry Smith for (j=0; j<mdn->A->cmap->n; j++) { 899d0f46423SBarry Smith for (i=0; i<mdn->A->rmap->n; i++) { 90067e560aaSBarry Smith tmp[j] += PetscAbsScalar(*v); v++; 9013501a2bdSLois Curfman McInnes } 9023501a2bdSLois Curfman McInnes } 903820f2d46SBarry Smith ierr = MPIU_Allreduce(tmp,tmp2,A->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRMPI(ierr); 904d0f46423SBarry Smith for (j=0; j<A->cmap->N; j++) { 905064f8208SBarry Smith if (tmp2[j] > *nrm) *nrm = tmp2[j]; 9063501a2bdSLois Curfman McInnes } 9078627564fSBarry Smith ierr = PetscFree2(tmp,tmp2);CHKERRQ(ierr); 908d0f46423SBarry Smith ierr = PetscLogFlops(A->cmap->n*A->rmap->n);CHKERRQ(ierr); 9093a40ed3dSBarry Smith } else if (type == NORM_INFINITY) { /* max row norm */ 910329f5518SBarry Smith PetscReal ntemp; 9113501a2bdSLois Curfman McInnes ierr = MatNorm(mdn->A,type,&ntemp);CHKERRQ(ierr); 912820f2d46SBarry Smith ierr = MPIU_Allreduce(&ntemp,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRMPI(ierr); 913ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"No support for two norm"); 9143501a2bdSLois Curfman McInnes } 915637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(mdn->A,&av);CHKERRQ(ierr); 9163a40ed3dSBarry Smith PetscFunctionReturn(0); 9173501a2bdSLois Curfman McInnes } 9183501a2bdSLois Curfman McInnes 919fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIDense(Mat A,MatReuse reuse,Mat *matout) 9203501a2bdSLois Curfman McInnes { 9213501a2bdSLois Curfman McInnes Mat_MPIDense *a = (Mat_MPIDense*)A->data; 9223501a2bdSLois Curfman McInnes Mat B; 923d0f46423SBarry Smith PetscInt M = A->rmap->N,N = A->cmap->N,m,n,*rwork,rstart = A->rmap->rstart; 9246849ba73SBarry Smith PetscErrorCode ierr; 925637a0070SStefano Zampini PetscInt j,i,lda; 92687828ca2SBarry Smith PetscScalar *v; 9273501a2bdSLois Curfman McInnes 9283a40ed3dSBarry Smith PetscFunctionBegin; 929cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 930ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 931d0f46423SBarry Smith ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr); 9327adad957SLisandro Dalcin ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr); 9330298fd71SBarry Smith ierr = MatMPIDenseSetPreallocation(B,NULL);CHKERRQ(ierr); 934637a0070SStefano Zampini } else B = *matout; 9353501a2bdSLois Curfman McInnes 936637a0070SStefano Zampini m = a->A->rmap->n; n = a->A->cmap->n; 937637a0070SStefano Zampini ierr = MatDenseGetArrayRead(a->A,(const PetscScalar**)&v);CHKERRQ(ierr); 938637a0070SStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 939785e854fSJed Brown ierr = PetscMalloc1(m,&rwork);CHKERRQ(ierr); 9403501a2bdSLois Curfman McInnes for (i=0; i<m; i++) rwork[i] = rstart + i; 9411acff37aSSatish Balay for (j=0; j<n; j++) { 9423501a2bdSLois Curfman McInnes ierr = MatSetValues(B,1,&j,m,rwork,v,INSERT_VALUES);CHKERRQ(ierr); 943637a0070SStefano Zampini v += lda; 9443501a2bdSLois Curfman McInnes } 945637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(a->A,(const PetscScalar**)&v);CHKERRQ(ierr); 946606d414cSSatish Balay ierr = PetscFree(rwork);CHKERRQ(ierr); 9476d4a8577SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 9486d4a8577SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 949cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) { 9503501a2bdSLois Curfman McInnes *matout = B; 9513501a2bdSLois Curfman McInnes } else { 95228be2f97SBarry Smith ierr = MatHeaderMerge(A,&B);CHKERRQ(ierr); 9533501a2bdSLois Curfman McInnes } 9543a40ed3dSBarry Smith PetscFunctionReturn(0); 955096963f5SLois Curfman McInnes } 956096963f5SLois Curfman McInnes 9576849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat,MatDuplicateOption,Mat*); 95852c5f739Sprj- PETSC_INTERN PetscErrorCode MatScale_MPIDense(Mat,PetscScalar); 9598965ea79SLois Curfman McInnes 9604994cf47SJed Brown PetscErrorCode MatSetUp_MPIDense(Mat A) 961273d9f13SBarry Smith { 962dfbe8321SBarry Smith PetscErrorCode ierr; 963273d9f13SBarry Smith 964273d9f13SBarry Smith PetscFunctionBegin; 96518992e5dSStefano Zampini ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr); 96618992e5dSStefano Zampini ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr); 96718992e5dSStefano Zampini if (!A->preallocated) { 968f4259b30SLisandro Dalcin ierr = MatMPIDenseSetPreallocation(A,NULL);CHKERRQ(ierr); 96918992e5dSStefano Zampini } 970273d9f13SBarry Smith PetscFunctionReturn(0); 971273d9f13SBarry Smith } 972273d9f13SBarry Smith 973488007eeSBarry Smith PetscErrorCode MatAXPY_MPIDense(Mat Y,PetscScalar alpha,Mat X,MatStructure str) 974488007eeSBarry Smith { 975488007eeSBarry Smith PetscErrorCode ierr; 976488007eeSBarry Smith Mat_MPIDense *A = (Mat_MPIDense*)Y->data, *B = (Mat_MPIDense*)X->data; 977488007eeSBarry Smith 978488007eeSBarry Smith PetscFunctionBegin; 979488007eeSBarry Smith ierr = MatAXPY(A->A,alpha,B->A,str);CHKERRQ(ierr); 980488007eeSBarry Smith PetscFunctionReturn(0); 981488007eeSBarry Smith } 982488007eeSBarry Smith 9837087cfbeSBarry Smith PetscErrorCode MatConjugate_MPIDense(Mat mat) 984ba337c44SJed Brown { 985ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)mat->data; 986ba337c44SJed Brown PetscErrorCode ierr; 987ba337c44SJed Brown 988ba337c44SJed Brown PetscFunctionBegin; 989ba337c44SJed Brown ierr = MatConjugate(a->A);CHKERRQ(ierr); 990ba337c44SJed Brown PetscFunctionReturn(0); 991ba337c44SJed Brown } 992ba337c44SJed Brown 993ba337c44SJed Brown PetscErrorCode MatRealPart_MPIDense(Mat A) 994ba337c44SJed Brown { 995ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 996ba337c44SJed Brown PetscErrorCode ierr; 997ba337c44SJed Brown 998ba337c44SJed Brown PetscFunctionBegin; 999ba337c44SJed Brown ierr = MatRealPart(a->A);CHKERRQ(ierr); 1000ba337c44SJed Brown PetscFunctionReturn(0); 1001ba337c44SJed Brown } 1002ba337c44SJed Brown 1003ba337c44SJed Brown PetscErrorCode MatImaginaryPart_MPIDense(Mat A) 1004ba337c44SJed Brown { 1005ba337c44SJed Brown Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1006ba337c44SJed Brown PetscErrorCode ierr; 1007ba337c44SJed Brown 1008ba337c44SJed Brown PetscFunctionBegin; 1009ba337c44SJed Brown ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 1010ba337c44SJed Brown PetscFunctionReturn(0); 1011ba337c44SJed Brown } 1012ba337c44SJed Brown 101349a6ff4bSBarry Smith static PetscErrorCode MatGetColumnVector_MPIDense(Mat A,Vec v,PetscInt col) 101449a6ff4bSBarry Smith { 101549a6ff4bSBarry Smith PetscErrorCode ierr; 1016637a0070SStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*) A->data; 101749a6ff4bSBarry Smith 101849a6ff4bSBarry Smith PetscFunctionBegin; 1019637a0070SStefano Zampini if (!a->A) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Missing local matrix"); 1020637a0070SStefano Zampini if (!a->A->ops->getcolumnvector) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Missing get column operation"); 1021637a0070SStefano Zampini ierr = (*a->A->ops->getcolumnvector)(a->A,v,col);CHKERRQ(ierr); 102249a6ff4bSBarry Smith PetscFunctionReturn(0); 102349a6ff4bSBarry Smith } 102449a6ff4bSBarry Smith 1025*a873a8cdSSam Reynolds PETSC_INTERN PetscErrorCode MatGetColumnReductions_SeqDense(Mat,ReductionType,PetscReal*); 102652c5f739Sprj- 1027*a873a8cdSSam Reynolds PetscErrorCode MatGetColumnReductions_MPIDense(Mat A,ReductionType type,PetscReal *reductions) 10280716a85fSBarry Smith { 10290716a85fSBarry Smith PetscErrorCode ierr; 1030*a873a8cdSSam Reynolds PetscInt i,m,n; 10310716a85fSBarry Smith Mat_MPIDense *a = (Mat_MPIDense*) A->data; 10320716a85fSBarry Smith PetscReal *work; 10330716a85fSBarry Smith 10340716a85fSBarry Smith PetscFunctionBegin; 1035*a873a8cdSSam Reynolds ierr = MatGetSize(A,&m,&n);CHKERRQ(ierr); 1036785e854fSJed Brown ierr = PetscMalloc1(n,&work);CHKERRQ(ierr); 1037*a873a8cdSSam Reynolds if (type == REDUCTION_MEAN) { 1038*a873a8cdSSam Reynolds ierr = MatGetColumnReductions_SeqDense(a->A,REDUCTION_SUM,work);CHKERRQ(ierr); 1039*a873a8cdSSam Reynolds } else { 1040*a873a8cdSSam Reynolds ierr = MatGetColumnReductions_SeqDense(a->A,type,work);CHKERRQ(ierr); 1041*a873a8cdSSam Reynolds } 1042*a873a8cdSSam Reynolds if (type == REDUCTION_NORM_2) { 10430716a85fSBarry Smith for (i=0; i<n; i++) work[i] *= work[i]; 10440716a85fSBarry Smith } 1045*a873a8cdSSam Reynolds if (type == REDUCTION_NORM_INFINITY) { 1046*a873a8cdSSam Reynolds ierr = MPIU_Allreduce(work,reductions,n,MPIU_REAL,MPIU_MAX,A->hdr.comm);CHKERRMPI(ierr); 10470716a85fSBarry Smith } else { 1048*a873a8cdSSam Reynolds ierr = MPIU_Allreduce(work,reductions,n,MPIU_REAL,MPIU_SUM,A->hdr.comm);CHKERRMPI(ierr); 10490716a85fSBarry Smith } 10500716a85fSBarry Smith ierr = PetscFree(work);CHKERRQ(ierr); 1051*a873a8cdSSam Reynolds if (type == REDUCTION_NORM_2) { 1052*a873a8cdSSam Reynolds for (i=0; i<n; i++) reductions[i] = PetscSqrtReal(reductions[i]); 1053*a873a8cdSSam Reynolds } else if (type == REDUCTION_MEAN) { 1054*a873a8cdSSam Reynolds for (i=0; i<n; i++) reductions[i] /= m; 10550716a85fSBarry Smith } 10560716a85fSBarry Smith PetscFunctionReturn(0); 10570716a85fSBarry Smith } 10580716a85fSBarry Smith 1059637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 10606947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVec_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10616947451fSStefano Zampini { 10626947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10636947451fSStefano Zampini PetscErrorCode ierr; 10646947451fSStefano Zampini PetscInt lda; 10656947451fSStefano Zampini 10666947451fSStefano Zampini PetscFunctionBegin; 1067616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1068616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 10696947451fSStefano Zampini if (!a->cvec) { 10706947451fSStefano Zampini ierr = VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr); 1071616b8fbbSStefano Zampini ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec);CHKERRQ(ierr); 10726947451fSStefano Zampini } 10736947451fSStefano Zampini a->vecinuse = col + 1; 10746947451fSStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 10756947451fSStefano Zampini ierr = MatDenseCUDAGetArray(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 10766947451fSStefano Zampini ierr = VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr); 10776947451fSStefano Zampini *v = a->cvec; 10786947451fSStefano Zampini PetscFunctionReturn(0); 10796947451fSStefano Zampini } 10806947451fSStefano Zampini 10816947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVec_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10826947451fSStefano Zampini { 10836947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10846947451fSStefano Zampini PetscErrorCode ierr; 10856947451fSStefano Zampini 10866947451fSStefano Zampini PetscFunctionBegin; 10875ea7661aSPierre Jolivet if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 10886947451fSStefano Zampini if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector"); 10896947451fSStefano Zampini a->vecinuse = 0; 10906947451fSStefano Zampini ierr = MatDenseCUDARestoreArray(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 10916947451fSStefano Zampini ierr = VecCUDAResetArray(a->cvec);CHKERRQ(ierr); 10926947451fSStefano Zampini *v = NULL; 10936947451fSStefano Zampini PetscFunctionReturn(0); 10946947451fSStefano Zampini } 10956947451fSStefano Zampini 10966947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecRead_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 10976947451fSStefano Zampini { 10986947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 10996947451fSStefano Zampini PetscInt lda; 11006947451fSStefano Zampini PetscErrorCode ierr; 11016947451fSStefano Zampini 11026947451fSStefano Zampini PetscFunctionBegin; 1103616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1104616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 11056947451fSStefano Zampini if (!a->cvec) { 11066947451fSStefano Zampini ierr = VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr); 1107616b8fbbSStefano Zampini ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec);CHKERRQ(ierr); 11086947451fSStefano Zampini } 11096947451fSStefano Zampini a->vecinuse = col + 1; 11106947451fSStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 11116947451fSStefano Zampini ierr = MatDenseCUDAGetArrayRead(a->A,&a->ptrinuse);CHKERRQ(ierr); 11126947451fSStefano Zampini ierr = VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr); 11136947451fSStefano Zampini ierr = VecLockReadPush(a->cvec);CHKERRQ(ierr); 11146947451fSStefano Zampini *v = a->cvec; 11156947451fSStefano Zampini PetscFunctionReturn(0); 11166947451fSStefano Zampini } 11176947451fSStefano Zampini 11186947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecRead_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 11196947451fSStefano Zampini { 11206947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 11216947451fSStefano Zampini PetscErrorCode ierr; 11226947451fSStefano Zampini 11236947451fSStefano Zampini PetscFunctionBegin; 1124616b8fbbSStefano Zampini if (!a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 1125616b8fbbSStefano Zampini if (!a->cvec) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 11266947451fSStefano Zampini a->vecinuse = 0; 11276947451fSStefano Zampini ierr = MatDenseCUDARestoreArrayRead(a->A,&a->ptrinuse);CHKERRQ(ierr); 11286947451fSStefano Zampini ierr = VecLockReadPop(a->cvec);CHKERRQ(ierr); 11296947451fSStefano Zampini ierr = VecCUDAResetArray(a->cvec);CHKERRQ(ierr); 11306947451fSStefano Zampini *v = NULL; 11316947451fSStefano Zampini PetscFunctionReturn(0); 11326947451fSStefano Zampini } 11336947451fSStefano Zampini 11346947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecWrite_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 11356947451fSStefano Zampini { 11366947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 11376947451fSStefano Zampini PetscErrorCode ierr; 11386947451fSStefano Zampini PetscInt lda; 11396947451fSStefano Zampini 11406947451fSStefano Zampini PetscFunctionBegin; 1141616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1142616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 11436947451fSStefano Zampini if (!a->cvec) { 11446947451fSStefano Zampini ierr = VecCreateMPICUDAWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr); 1145616b8fbbSStefano Zampini ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)a->cvec);CHKERRQ(ierr); 11466947451fSStefano Zampini } 11476947451fSStefano Zampini a->vecinuse = col + 1; 11486947451fSStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 11496947451fSStefano Zampini ierr = MatDenseCUDAGetArrayWrite(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 11506947451fSStefano Zampini ierr = VecCUDAPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr); 11516947451fSStefano Zampini *v = a->cvec; 11526947451fSStefano Zampini PetscFunctionReturn(0); 11536947451fSStefano Zampini } 11546947451fSStefano Zampini 11556947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDenseCUDA(Mat A,PetscInt col,Vec *v) 11566947451fSStefano Zampini { 11576947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 11586947451fSStefano Zampini PetscErrorCode ierr; 11596947451fSStefano Zampini 11606947451fSStefano Zampini PetscFunctionBegin; 1161616b8fbbSStefano Zampini if (!a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 1162616b8fbbSStefano Zampini if (!a->cvec) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 11636947451fSStefano Zampini a->vecinuse = 0; 11646947451fSStefano Zampini ierr = MatDenseCUDARestoreArrayWrite(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 11656947451fSStefano Zampini ierr = VecCUDAResetArray(a->cvec);CHKERRQ(ierr); 11666947451fSStefano Zampini *v = NULL; 11676947451fSStefano Zampini PetscFunctionReturn(0); 11686947451fSStefano Zampini } 11696947451fSStefano Zampini 1170637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAPlaceArray_MPIDenseCUDA(Mat A, const PetscScalar *a) 1171637a0070SStefano Zampini { 1172637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1173637a0070SStefano Zampini PetscErrorCode ierr; 1174637a0070SStefano Zampini 1175637a0070SStefano Zampini PetscFunctionBegin; 1176616b8fbbSStefano Zampini if (l->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1177616b8fbbSStefano Zampini if (l->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1178637a0070SStefano Zampini ierr = MatDenseCUDAPlaceArray(l->A,a);CHKERRQ(ierr); 1179637a0070SStefano Zampini PetscFunctionReturn(0); 1180637a0070SStefano Zampini } 1181637a0070SStefano Zampini 1182637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAResetArray_MPIDenseCUDA(Mat A) 1183637a0070SStefano Zampini { 1184637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1185637a0070SStefano Zampini PetscErrorCode ierr; 1186637a0070SStefano Zampini 1187637a0070SStefano Zampini PetscFunctionBegin; 1188616b8fbbSStefano Zampini if (l->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1189616b8fbbSStefano Zampini if (l->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1190637a0070SStefano Zampini ierr = MatDenseCUDAResetArray(l->A);CHKERRQ(ierr); 1191637a0070SStefano Zampini PetscFunctionReturn(0); 1192637a0070SStefano Zampini } 1193637a0070SStefano Zampini 1194d5ea218eSStefano Zampini static PetscErrorCode MatDenseCUDAReplaceArray_MPIDenseCUDA(Mat A, const PetscScalar *a) 1195d5ea218eSStefano Zampini { 1196d5ea218eSStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1197d5ea218eSStefano Zampini PetscErrorCode ierr; 1198d5ea218eSStefano Zampini 1199d5ea218eSStefano Zampini PetscFunctionBegin; 1200616b8fbbSStefano Zampini if (l->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1201616b8fbbSStefano Zampini if (l->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1202d5ea218eSStefano Zampini ierr = MatDenseCUDAReplaceArray(l->A,a);CHKERRQ(ierr); 1203d5ea218eSStefano Zampini PetscFunctionReturn(0); 1204d5ea218eSStefano Zampini } 1205d5ea218eSStefano Zampini 1206637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArrayWrite_MPIDenseCUDA(Mat A, PetscScalar **a) 1207637a0070SStefano Zampini { 1208637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1209637a0070SStefano Zampini PetscErrorCode ierr; 1210637a0070SStefano Zampini 1211637a0070SStefano Zampini PetscFunctionBegin; 1212637a0070SStefano Zampini ierr = MatDenseCUDAGetArrayWrite(l->A,a);CHKERRQ(ierr); 1213637a0070SStefano Zampini PetscFunctionReturn(0); 1214637a0070SStefano Zampini } 1215637a0070SStefano Zampini 1216637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArrayWrite_MPIDenseCUDA(Mat A, PetscScalar **a) 1217637a0070SStefano Zampini { 1218637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1219637a0070SStefano Zampini PetscErrorCode ierr; 1220637a0070SStefano Zampini 1221637a0070SStefano Zampini PetscFunctionBegin; 1222637a0070SStefano Zampini ierr = MatDenseCUDARestoreArrayWrite(l->A,a);CHKERRQ(ierr); 1223637a0070SStefano Zampini PetscFunctionReturn(0); 1224637a0070SStefano Zampini } 1225637a0070SStefano Zampini 1226637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArrayRead_MPIDenseCUDA(Mat A, const PetscScalar **a) 1227637a0070SStefano Zampini { 1228637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1229637a0070SStefano Zampini PetscErrorCode ierr; 1230637a0070SStefano Zampini 1231637a0070SStefano Zampini PetscFunctionBegin; 1232637a0070SStefano Zampini ierr = MatDenseCUDAGetArrayRead(l->A,a);CHKERRQ(ierr); 1233637a0070SStefano Zampini PetscFunctionReturn(0); 1234637a0070SStefano Zampini } 1235637a0070SStefano Zampini 1236637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArrayRead_MPIDenseCUDA(Mat A, const PetscScalar **a) 1237637a0070SStefano Zampini { 1238637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1239637a0070SStefano Zampini PetscErrorCode ierr; 1240637a0070SStefano Zampini 1241637a0070SStefano Zampini PetscFunctionBegin; 1242637a0070SStefano Zampini ierr = MatDenseCUDARestoreArrayRead(l->A,a);CHKERRQ(ierr); 1243637a0070SStefano Zampini PetscFunctionReturn(0); 1244637a0070SStefano Zampini } 1245637a0070SStefano Zampini 1246637a0070SStefano Zampini static PetscErrorCode MatDenseCUDAGetArray_MPIDenseCUDA(Mat A, PetscScalar **a) 1247637a0070SStefano Zampini { 1248637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1249637a0070SStefano Zampini PetscErrorCode ierr; 1250637a0070SStefano Zampini 1251637a0070SStefano Zampini PetscFunctionBegin; 1252637a0070SStefano Zampini ierr = MatDenseCUDAGetArray(l->A,a);CHKERRQ(ierr); 1253637a0070SStefano Zampini PetscFunctionReturn(0); 1254637a0070SStefano Zampini } 1255637a0070SStefano Zampini 1256637a0070SStefano Zampini static PetscErrorCode MatDenseCUDARestoreArray_MPIDenseCUDA(Mat A, PetscScalar **a) 1257637a0070SStefano Zampini { 1258637a0070SStefano Zampini Mat_MPIDense *l = (Mat_MPIDense*) A->data; 1259637a0070SStefano Zampini PetscErrorCode ierr; 1260637a0070SStefano Zampini 1261637a0070SStefano Zampini PetscFunctionBegin; 1262637a0070SStefano Zampini ierr = MatDenseCUDARestoreArray(l->A,a);CHKERRQ(ierr); 1263637a0070SStefano Zampini PetscFunctionReturn(0); 1264637a0070SStefano Zampini } 1265637a0070SStefano Zampini 12666947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecWrite_MPIDense(Mat,PetscInt,Vec*); 12676947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVecRead_MPIDense(Mat,PetscInt,Vec*); 12686947451fSStefano Zampini static PetscErrorCode MatDenseGetColumnVec_MPIDense(Mat,PetscInt,Vec*); 12696947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDense(Mat,PetscInt,Vec*); 12706947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVecRead_MPIDense(Mat,PetscInt,Vec*); 12716947451fSStefano Zampini static PetscErrorCode MatDenseRestoreColumnVec_MPIDense(Mat,PetscInt,Vec*); 12725ea7661aSPierre Jolivet static PetscErrorCode MatDenseRestoreSubMatrix_MPIDense(Mat,Mat*); 12736947451fSStefano Zampini 1274637a0070SStefano Zampini static PetscErrorCode MatBindToCPU_MPIDenseCUDA(Mat mat,PetscBool bind) 1275637a0070SStefano Zampini { 1276637a0070SStefano Zampini Mat_MPIDense *d = (Mat_MPIDense*)mat->data; 1277637a0070SStefano Zampini PetscErrorCode ierr; 1278637a0070SStefano Zampini 1279637a0070SStefano Zampini PetscFunctionBegin; 1280616b8fbbSStefano Zampini if (d->vecinuse) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1281616b8fbbSStefano Zampini if (d->matinuse) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1282637a0070SStefano Zampini if (d->A) { 1283637a0070SStefano Zampini ierr = MatBindToCPU(d->A,bind);CHKERRQ(ierr); 1284637a0070SStefano Zampini } 1285637a0070SStefano Zampini mat->boundtocpu = bind; 12866947451fSStefano Zampini if (!bind) { 12876947451fSStefano Zampini PetscBool iscuda; 12886947451fSStefano Zampini 12896947451fSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)d->cvec,VECMPICUDA,&iscuda);CHKERRQ(ierr); 12906947451fSStefano Zampini if (!iscuda) { 12916947451fSStefano Zampini ierr = VecDestroy(&d->cvec);CHKERRQ(ierr); 1292616b8fbbSStefano Zampini } 1293616b8fbbSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)d->cmat,MATMPIDENSECUDA,&iscuda);CHKERRQ(ierr); 1294616b8fbbSStefano Zampini if (!iscuda) { 12955ea7661aSPierre Jolivet ierr = MatDestroy(&d->cmat);CHKERRQ(ierr); 12966947451fSStefano Zampini } 12976947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDenseCUDA);CHKERRQ(ierr); 12986947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDenseCUDA);CHKERRQ(ierr); 12996947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDenseCUDA);CHKERRQ(ierr); 13006947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDenseCUDA);CHKERRQ(ierr); 13016947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDenseCUDA);CHKERRQ(ierr); 13026947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDenseCUDA);CHKERRQ(ierr); 13036947451fSStefano Zampini } else { 13046947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDense);CHKERRQ(ierr); 13056947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDense);CHKERRQ(ierr); 13066947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDense);CHKERRQ(ierr); 13076947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDense);CHKERRQ(ierr); 13086947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDense);CHKERRQ(ierr); 13096947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDense);CHKERRQ(ierr); 1310616b8fbbSStefano Zampini } 1311616b8fbbSStefano Zampini if (d->cmat) { 1312616b8fbbSStefano Zampini ierr = MatBindToCPU(d->cmat,bind);CHKERRQ(ierr); 13136947451fSStefano Zampini } 1314637a0070SStefano Zampini PetscFunctionReturn(0); 1315637a0070SStefano Zampini } 1316637a0070SStefano Zampini 1317637a0070SStefano Zampini PetscErrorCode MatMPIDenseCUDASetPreallocation(Mat A, PetscScalar *d_data) 1318637a0070SStefano Zampini { 1319637a0070SStefano Zampini Mat_MPIDense *d = (Mat_MPIDense*)A->data; 1320637a0070SStefano Zampini PetscErrorCode ierr; 1321637a0070SStefano Zampini PetscBool iscuda; 1322637a0070SStefano Zampini 1323637a0070SStefano Zampini PetscFunctionBegin; 1324d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 1325637a0070SStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIDENSECUDA,&iscuda);CHKERRQ(ierr); 1326637a0070SStefano Zampini if (!iscuda) PetscFunctionReturn(0); 1327637a0070SStefano Zampini ierr = PetscLayoutSetUp(A->rmap);CHKERRQ(ierr); 1328637a0070SStefano Zampini ierr = PetscLayoutSetUp(A->cmap);CHKERRQ(ierr); 1329637a0070SStefano Zampini if (!d->A) { 1330637a0070SStefano Zampini ierr = MatCreate(PETSC_COMM_SELF,&d->A);CHKERRQ(ierr); 1331637a0070SStefano Zampini ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)d->A);CHKERRQ(ierr); 1332637a0070SStefano Zampini ierr = MatSetSizes(d->A,A->rmap->n,A->cmap->N,A->rmap->n,A->cmap->N);CHKERRQ(ierr); 1333637a0070SStefano Zampini } 1334637a0070SStefano Zampini ierr = MatSetType(d->A,MATSEQDENSECUDA);CHKERRQ(ierr); 1335637a0070SStefano Zampini ierr = MatSeqDenseCUDASetPreallocation(d->A,d_data);CHKERRQ(ierr); 1336637a0070SStefano Zampini A->preallocated = PETSC_TRUE; 1337637a0070SStefano Zampini PetscFunctionReturn(0); 1338637a0070SStefano Zampini } 1339637a0070SStefano Zampini #endif 1340637a0070SStefano Zampini 134173a71a0fSBarry Smith static PetscErrorCode MatSetRandom_MPIDense(Mat x,PetscRandom rctx) 134273a71a0fSBarry Smith { 134373a71a0fSBarry Smith Mat_MPIDense *d = (Mat_MPIDense*)x->data; 134473a71a0fSBarry Smith PetscErrorCode ierr; 134573a71a0fSBarry Smith 134673a71a0fSBarry Smith PetscFunctionBegin; 1347637a0070SStefano Zampini ierr = MatSetRandom(d->A,rctx);CHKERRQ(ierr); 134873a71a0fSBarry Smith PetscFunctionReturn(0); 134973a71a0fSBarry Smith } 135073a71a0fSBarry Smith 13513b49f96aSBarry Smith static PetscErrorCode MatMissingDiagonal_MPIDense(Mat A,PetscBool *missing,PetscInt *d) 13523b49f96aSBarry Smith { 13533b49f96aSBarry Smith PetscFunctionBegin; 13543b49f96aSBarry Smith *missing = PETSC_FALSE; 13553b49f96aSBarry Smith PetscFunctionReturn(0); 13563b49f96aSBarry Smith } 13573b49f96aSBarry Smith 13584222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat,Mat,PetscReal,Mat); 1359cc48ffa7SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat,Mat,Mat); 13606718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat,Mat,Mat); 13616718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat,Mat,PetscReal,Mat); 13626718818eSStefano Zampini static PetscErrorCode MatEqual_MPIDense(Mat,Mat,PetscBool*); 13636718818eSStefano Zampini static PetscErrorCode MatLoad_MPIDense(Mat,PetscViewer); 1364cc48ffa7SToby Isaac 13658965ea79SLois Curfman McInnes /* -------------------------------------------------------------------*/ 136609dc0095SBarry Smith static struct _MatOps MatOps_Values = { MatSetValues_MPIDense, 136709dc0095SBarry Smith MatGetRow_MPIDense, 136809dc0095SBarry Smith MatRestoreRow_MPIDense, 136909dc0095SBarry Smith MatMult_MPIDense, 137097304618SKris Buschelman /* 4*/ MatMultAdd_MPIDense, 13717c922b88SBarry Smith MatMultTranspose_MPIDense, 13727c922b88SBarry Smith MatMultTransposeAdd_MPIDense, 1373f4259b30SLisandro Dalcin NULL, 1374f4259b30SLisandro Dalcin NULL, 1375f4259b30SLisandro Dalcin NULL, 1376f4259b30SLisandro Dalcin /* 10*/ NULL, 1377f4259b30SLisandro Dalcin NULL, 1378f4259b30SLisandro Dalcin NULL, 1379f4259b30SLisandro Dalcin NULL, 138009dc0095SBarry Smith MatTranspose_MPIDense, 138197304618SKris Buschelman /* 15*/ MatGetInfo_MPIDense, 13826e4ee0c6SHong Zhang MatEqual_MPIDense, 138309dc0095SBarry Smith MatGetDiagonal_MPIDense, 13845b2fa520SLois Curfman McInnes MatDiagonalScale_MPIDense, 138509dc0095SBarry Smith MatNorm_MPIDense, 138697304618SKris Buschelman /* 20*/ MatAssemblyBegin_MPIDense, 138709dc0095SBarry Smith MatAssemblyEnd_MPIDense, 138809dc0095SBarry Smith MatSetOption_MPIDense, 138909dc0095SBarry Smith MatZeroEntries_MPIDense, 1390d519adbfSMatthew Knepley /* 24*/ MatZeroRows_MPIDense, 1391f4259b30SLisandro Dalcin NULL, 1392f4259b30SLisandro Dalcin NULL, 1393f4259b30SLisandro Dalcin NULL, 1394f4259b30SLisandro Dalcin NULL, 13954994cf47SJed Brown /* 29*/ MatSetUp_MPIDense, 1396f4259b30SLisandro Dalcin NULL, 1397f4259b30SLisandro Dalcin NULL, 1398c56a70eeSBarry Smith MatGetDiagonalBlock_MPIDense, 1399f4259b30SLisandro Dalcin NULL, 1400d519adbfSMatthew Knepley /* 34*/ MatDuplicate_MPIDense, 1401f4259b30SLisandro Dalcin NULL, 1402f4259b30SLisandro Dalcin NULL, 1403f4259b30SLisandro Dalcin NULL, 1404f4259b30SLisandro Dalcin NULL, 1405d519adbfSMatthew Knepley /* 39*/ MatAXPY_MPIDense, 14067dae84e0SHong Zhang MatCreateSubMatrices_MPIDense, 1407f4259b30SLisandro Dalcin NULL, 140809dc0095SBarry Smith MatGetValues_MPIDense, 1409a76f77c3SStefano Zampini MatCopy_MPIDense, 1410f4259b30SLisandro Dalcin /* 44*/ NULL, 141109dc0095SBarry Smith MatScale_MPIDense, 14127d68702bSBarry Smith MatShift_Basic, 1413f4259b30SLisandro Dalcin NULL, 1414f4259b30SLisandro Dalcin NULL, 141573a71a0fSBarry Smith /* 49*/ MatSetRandom_MPIDense, 1416f4259b30SLisandro Dalcin NULL, 1417f4259b30SLisandro Dalcin NULL, 1418f4259b30SLisandro Dalcin NULL, 1419f4259b30SLisandro Dalcin NULL, 1420f4259b30SLisandro Dalcin /* 54*/ NULL, 1421f4259b30SLisandro Dalcin NULL, 1422f4259b30SLisandro Dalcin NULL, 1423f4259b30SLisandro Dalcin NULL, 1424f4259b30SLisandro Dalcin NULL, 14257dae84e0SHong Zhang /* 59*/ MatCreateSubMatrix_MPIDense, 1426b9b97703SBarry Smith MatDestroy_MPIDense, 1427b9b97703SBarry Smith MatView_MPIDense, 1428f4259b30SLisandro Dalcin NULL, 1429f4259b30SLisandro Dalcin NULL, 1430f4259b30SLisandro Dalcin /* 64*/ NULL, 1431f4259b30SLisandro Dalcin NULL, 1432f4259b30SLisandro Dalcin NULL, 1433f4259b30SLisandro Dalcin NULL, 1434f4259b30SLisandro Dalcin NULL, 1435f4259b30SLisandro Dalcin /* 69*/ NULL, 1436f4259b30SLisandro Dalcin NULL, 1437f4259b30SLisandro Dalcin NULL, 1438f4259b30SLisandro Dalcin NULL, 1439f4259b30SLisandro Dalcin NULL, 1440f4259b30SLisandro Dalcin /* 74*/ NULL, 1441f4259b30SLisandro Dalcin NULL, 1442f4259b30SLisandro Dalcin NULL, 1443f4259b30SLisandro Dalcin NULL, 1444f4259b30SLisandro Dalcin NULL, 1445f4259b30SLisandro Dalcin /* 79*/ NULL, 1446f4259b30SLisandro Dalcin NULL, 1447f4259b30SLisandro Dalcin NULL, 1448f4259b30SLisandro Dalcin NULL, 14495bba2384SShri Abhyankar /* 83*/ MatLoad_MPIDense, 1450f4259b30SLisandro Dalcin NULL, 1451f4259b30SLisandro Dalcin NULL, 1452f4259b30SLisandro Dalcin NULL, 1453f4259b30SLisandro Dalcin NULL, 1454f4259b30SLisandro Dalcin NULL, 1455f4259b30SLisandro Dalcin /* 89*/ NULL, 1456f4259b30SLisandro Dalcin NULL, 1457f4259b30SLisandro Dalcin NULL, 1458f4259b30SLisandro Dalcin NULL, 1459f4259b30SLisandro Dalcin NULL, 1460f4259b30SLisandro Dalcin /* 94*/ NULL, 1461f4259b30SLisandro Dalcin NULL, 14626718818eSStefano Zampini MatMatTransposeMultSymbolic_MPIDense_MPIDense, 1463cc48ffa7SToby Isaac MatMatTransposeMultNumeric_MPIDense_MPIDense, 1464f4259b30SLisandro Dalcin NULL, 14654222ddf1SHong Zhang /* 99*/ MatProductSetFromOptions_MPIDense, 1466f4259b30SLisandro Dalcin NULL, 1467f4259b30SLisandro Dalcin NULL, 1468ba337c44SJed Brown MatConjugate_MPIDense, 1469f4259b30SLisandro Dalcin NULL, 1470f4259b30SLisandro Dalcin /*104*/ NULL, 1471ba337c44SJed Brown MatRealPart_MPIDense, 1472ba337c44SJed Brown MatImaginaryPart_MPIDense, 1473f4259b30SLisandro Dalcin NULL, 1474f4259b30SLisandro Dalcin NULL, 1475f4259b30SLisandro Dalcin /*109*/ NULL, 1476f4259b30SLisandro Dalcin NULL, 1477f4259b30SLisandro Dalcin NULL, 147849a6ff4bSBarry Smith MatGetColumnVector_MPIDense, 14793b49f96aSBarry Smith MatMissingDiagonal_MPIDense, 1480f4259b30SLisandro Dalcin /*114*/ NULL, 1481f4259b30SLisandro Dalcin NULL, 1482f4259b30SLisandro Dalcin NULL, 1483f4259b30SLisandro Dalcin NULL, 1484f4259b30SLisandro Dalcin NULL, 1485f4259b30SLisandro Dalcin /*119*/ NULL, 1486f4259b30SLisandro Dalcin NULL, 1487f4259b30SLisandro Dalcin NULL, 1488f4259b30SLisandro Dalcin NULL, 1489f4259b30SLisandro Dalcin NULL, 1490f4259b30SLisandro Dalcin /*124*/ NULL, 1491*a873a8cdSSam Reynolds MatGetColumnReductions_MPIDense, 1492f4259b30SLisandro Dalcin NULL, 1493f4259b30SLisandro Dalcin NULL, 1494f4259b30SLisandro Dalcin NULL, 1495f4259b30SLisandro Dalcin /*129*/ NULL, 1496f4259b30SLisandro Dalcin NULL, 14976718818eSStefano Zampini MatTransposeMatMultSymbolic_MPIDense_MPIDense, 1498cb20be35SHong Zhang MatTransposeMatMultNumeric_MPIDense_MPIDense, 1499f4259b30SLisandro Dalcin NULL, 1500f4259b30SLisandro Dalcin /*134*/ NULL, 1501f4259b30SLisandro Dalcin NULL, 1502f4259b30SLisandro Dalcin NULL, 1503f4259b30SLisandro Dalcin NULL, 1504f4259b30SLisandro Dalcin NULL, 1505f4259b30SLisandro Dalcin /*139*/ NULL, 1506f4259b30SLisandro Dalcin NULL, 1507f4259b30SLisandro Dalcin NULL, 1508f4259b30SLisandro Dalcin NULL, 1509f4259b30SLisandro Dalcin NULL, 15104222ddf1SHong Zhang MatCreateMPIMatConcatenateSeqMat_MPIDense, 1511f4259b30SLisandro Dalcin /*145*/ NULL, 1512f4259b30SLisandro Dalcin NULL, 1513f4259b30SLisandro Dalcin NULL 1514ba337c44SJed Brown }; 15158965ea79SLois Curfman McInnes 15167087cfbeSBarry Smith PetscErrorCode MatMPIDenseSetPreallocation_MPIDense(Mat mat,PetscScalar *data) 1517a23d5eceSKris Buschelman { 1518637a0070SStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)mat->data; 1519637a0070SStefano Zampini PetscBool iscuda; 1520dfbe8321SBarry Smith PetscErrorCode ierr; 1521a23d5eceSKris Buschelman 1522a23d5eceSKris Buschelman PetscFunctionBegin; 1523616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 152434ef9618SShri Abhyankar ierr = PetscLayoutSetUp(mat->rmap);CHKERRQ(ierr); 152534ef9618SShri Abhyankar ierr = PetscLayoutSetUp(mat->cmap);CHKERRQ(ierr); 1526637a0070SStefano Zampini if (!a->A) { 1527f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&a->A);CHKERRQ(ierr); 15283bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 1529637a0070SStefano Zampini ierr = MatSetSizes(a->A,mat->rmap->n,mat->cmap->N,mat->rmap->n,mat->cmap->N);CHKERRQ(ierr); 1530637a0070SStefano Zampini } 1531637a0070SStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)mat,MATMPIDENSECUDA,&iscuda);CHKERRQ(ierr); 1532637a0070SStefano Zampini ierr = MatSetType(a->A,iscuda ? MATSEQDENSECUDA : MATSEQDENSE);CHKERRQ(ierr); 1533637a0070SStefano Zampini ierr = MatSeqDenseSetPreallocation(a->A,data);CHKERRQ(ierr); 1534637a0070SStefano Zampini mat->preallocated = PETSC_TRUE; 1535a23d5eceSKris Buschelman PetscFunctionReturn(0); 1536a23d5eceSKris Buschelman } 1537a23d5eceSKris Buschelman 15384e29119aSPierre Jolivet PETSC_INTERN PetscErrorCode MatConvert_MPIAIJ_MPIDense(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 15394e29119aSPierre Jolivet { 15404e29119aSPierre Jolivet Mat B,C; 15414e29119aSPierre Jolivet PetscErrorCode ierr; 15424e29119aSPierre Jolivet 15434e29119aSPierre Jolivet PetscFunctionBegin; 15444e29119aSPierre Jolivet ierr = MatMPIAIJGetLocalMat(A,MAT_INITIAL_MATRIX,&C);CHKERRQ(ierr); 15454e29119aSPierre Jolivet ierr = MatConvert_SeqAIJ_SeqDense(C,MATSEQDENSE,MAT_INITIAL_MATRIX,&B);CHKERRQ(ierr); 15464e29119aSPierre Jolivet ierr = MatDestroy(&C);CHKERRQ(ierr); 15474e29119aSPierre Jolivet if (reuse == MAT_REUSE_MATRIX) { 15484e29119aSPierre Jolivet C = *newmat; 15494e29119aSPierre Jolivet } else C = NULL; 15504e29119aSPierre Jolivet ierr = MatCreateMPIMatConcatenateSeqMat(PetscObjectComm((PetscObject)A),B,A->cmap->n,!C?MAT_INITIAL_MATRIX:MAT_REUSE_MATRIX,&C);CHKERRQ(ierr); 15514e29119aSPierre Jolivet ierr = MatDestroy(&B);CHKERRQ(ierr); 15524e29119aSPierre Jolivet if (reuse == MAT_INPLACE_MATRIX) { 15534e29119aSPierre Jolivet ierr = MatHeaderReplace(A,&C);CHKERRQ(ierr); 15544e29119aSPierre Jolivet } else if (reuse == MAT_INITIAL_MATRIX) *newmat = C; 15554e29119aSPierre Jolivet PetscFunctionReturn(0); 15564e29119aSPierre Jolivet } 15574e29119aSPierre Jolivet 15584e29119aSPierre Jolivet PetscErrorCode MatConvert_MPIDense_MPIAIJ(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 15594e29119aSPierre Jolivet { 15604e29119aSPierre Jolivet Mat B,C; 15614e29119aSPierre Jolivet PetscErrorCode ierr; 15624e29119aSPierre Jolivet 15634e29119aSPierre Jolivet PetscFunctionBegin; 15644e29119aSPierre Jolivet ierr = MatDenseGetLocalMatrix(A,&C);CHKERRQ(ierr); 15654e29119aSPierre Jolivet ierr = MatConvert_SeqDense_SeqAIJ(C,MATSEQAIJ,MAT_INITIAL_MATRIX,&B);CHKERRQ(ierr); 15664e29119aSPierre Jolivet if (reuse == MAT_REUSE_MATRIX) { 15674e29119aSPierre Jolivet C = *newmat; 15684e29119aSPierre Jolivet } else C = NULL; 15694e29119aSPierre Jolivet ierr = MatCreateMPIMatConcatenateSeqMat(PetscObjectComm((PetscObject)A),B,A->cmap->n,!C?MAT_INITIAL_MATRIX:MAT_REUSE_MATRIX,&C);CHKERRQ(ierr); 15704e29119aSPierre Jolivet ierr = MatDestroy(&B);CHKERRQ(ierr); 15714e29119aSPierre Jolivet if (reuse == MAT_INPLACE_MATRIX) { 15724e29119aSPierre Jolivet ierr = MatHeaderReplace(A,&C);CHKERRQ(ierr); 15734e29119aSPierre Jolivet } else if (reuse == MAT_INITIAL_MATRIX) *newmat = C; 15744e29119aSPierre Jolivet PetscFunctionReturn(0); 15754e29119aSPierre Jolivet } 15764e29119aSPierre Jolivet 157765b80a83SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 1578cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIDense_Elemental(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) 15798baccfbdSHong Zhang { 15808ea901baSHong Zhang Mat mat_elemental; 15818ea901baSHong Zhang PetscErrorCode ierr; 158232d7a744SHong Zhang PetscScalar *v; 158332d7a744SHong Zhang PetscInt m=A->rmap->n,N=A->cmap->N,rstart=A->rmap->rstart,i,*rows,*cols; 15848ea901baSHong Zhang 15858baccfbdSHong Zhang PetscFunctionBegin; 1586378336b6SHong Zhang if (reuse == MAT_REUSE_MATRIX) { 1587378336b6SHong Zhang mat_elemental = *newmat; 1588378336b6SHong Zhang ierr = MatZeroEntries(*newmat);CHKERRQ(ierr); 1589378336b6SHong Zhang } else { 1590378336b6SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)A), &mat_elemental);CHKERRQ(ierr); 1591378336b6SHong Zhang ierr = MatSetSizes(mat_elemental,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 1592378336b6SHong Zhang ierr = MatSetType(mat_elemental,MATELEMENTAL);CHKERRQ(ierr); 1593378336b6SHong Zhang ierr = MatSetUp(mat_elemental);CHKERRQ(ierr); 159432d7a744SHong Zhang ierr = MatSetOption(mat_elemental,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 1595378336b6SHong Zhang } 1596378336b6SHong Zhang 159732d7a744SHong Zhang ierr = PetscMalloc2(m,&rows,N,&cols);CHKERRQ(ierr); 159832d7a744SHong Zhang for (i=0; i<N; i++) cols[i] = i; 159932d7a744SHong Zhang for (i=0; i<m; i++) rows[i] = rstart + i; 16008ea901baSHong Zhang 1601637a0070SStefano Zampini /* PETSc-Elemental interface uses axpy for setting off-processor entries, only ADD_VALUES is allowed */ 160232d7a744SHong Zhang ierr = MatDenseGetArray(A,&v);CHKERRQ(ierr); 160332d7a744SHong Zhang ierr = MatSetValues(mat_elemental,m,rows,N,cols,v,ADD_VALUES);CHKERRQ(ierr); 16048ea901baSHong Zhang ierr = MatAssemblyBegin(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 16058ea901baSHong Zhang ierr = MatAssemblyEnd(mat_elemental, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 160632d7a744SHong Zhang ierr = MatDenseRestoreArray(A,&v);CHKERRQ(ierr); 160732d7a744SHong Zhang ierr = PetscFree2(rows,cols);CHKERRQ(ierr); 16088ea901baSHong Zhang 1609511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 161028be2f97SBarry Smith ierr = MatHeaderReplace(A,&mat_elemental);CHKERRQ(ierr); 16118ea901baSHong Zhang } else { 16128ea901baSHong Zhang *newmat = mat_elemental; 16138ea901baSHong Zhang } 16148baccfbdSHong Zhang PetscFunctionReturn(0); 16158baccfbdSHong Zhang } 161665b80a83SHong Zhang #endif 16178baccfbdSHong Zhang 1618af53bab2SHong Zhang static PetscErrorCode MatDenseGetColumn_MPIDense(Mat A,PetscInt col,PetscScalar **vals) 161986aefd0dSHong Zhang { 162086aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 162186aefd0dSHong Zhang PetscErrorCode ierr; 162286aefd0dSHong Zhang 162386aefd0dSHong Zhang PetscFunctionBegin; 162486aefd0dSHong Zhang ierr = MatDenseGetColumn(mat->A,col,vals);CHKERRQ(ierr); 162586aefd0dSHong Zhang PetscFunctionReturn(0); 162686aefd0dSHong Zhang } 162786aefd0dSHong Zhang 1628af53bab2SHong Zhang static PetscErrorCode MatDenseRestoreColumn_MPIDense(Mat A,PetscScalar **vals) 162986aefd0dSHong Zhang { 163086aefd0dSHong Zhang Mat_MPIDense *mat = (Mat_MPIDense*)A->data; 163186aefd0dSHong Zhang PetscErrorCode ierr; 163286aefd0dSHong Zhang 163386aefd0dSHong Zhang PetscFunctionBegin; 163486aefd0dSHong Zhang ierr = MatDenseRestoreColumn(mat->A,vals);CHKERRQ(ierr); 163586aefd0dSHong Zhang PetscFunctionReturn(0); 163686aefd0dSHong Zhang } 163786aefd0dSHong Zhang 163894e2cb23SJakub Kruzik PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIDense(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 163994e2cb23SJakub Kruzik { 164094e2cb23SJakub Kruzik PetscErrorCode ierr; 164194e2cb23SJakub Kruzik Mat_MPIDense *mat; 164294e2cb23SJakub Kruzik PetscInt m,nloc,N; 164394e2cb23SJakub Kruzik 164494e2cb23SJakub Kruzik PetscFunctionBegin; 164594e2cb23SJakub Kruzik ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr); 164694e2cb23SJakub Kruzik ierr = MatGetLocalSize(inmat,NULL,&nloc);CHKERRQ(ierr); 164794e2cb23SJakub Kruzik if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 164894e2cb23SJakub Kruzik PetscInt sum; 164994e2cb23SJakub Kruzik 165094e2cb23SJakub Kruzik if (n == PETSC_DECIDE) { 165194e2cb23SJakub Kruzik ierr = PetscSplitOwnership(comm,&n,&N);CHKERRQ(ierr); 165294e2cb23SJakub Kruzik } 165394e2cb23SJakub Kruzik /* Check sum(n) = N */ 1654820f2d46SBarry Smith ierr = MPIU_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm);CHKERRMPI(ierr); 165594e2cb23SJakub Kruzik if (sum != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns %D != global columns %D",sum,N); 165694e2cb23SJakub Kruzik 165794e2cb23SJakub Kruzik ierr = MatCreateDense(comm,m,n,PETSC_DETERMINE,N,NULL,outmat);CHKERRQ(ierr); 1658f2e2784eSPierre Jolivet ierr = MatSetOption(*outmat,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE);CHKERRQ(ierr); 165994e2cb23SJakub Kruzik } 166094e2cb23SJakub Kruzik 166194e2cb23SJakub Kruzik /* numeric phase */ 166294e2cb23SJakub Kruzik mat = (Mat_MPIDense*)(*outmat)->data; 166394e2cb23SJakub Kruzik ierr = MatCopy(inmat,mat->A,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 166494e2cb23SJakub Kruzik ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 166594e2cb23SJakub Kruzik ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 166694e2cb23SJakub Kruzik PetscFunctionReturn(0); 166794e2cb23SJakub Kruzik } 166894e2cb23SJakub Kruzik 1669637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1670637a0070SStefano Zampini PetscErrorCode MatConvert_MPIDenseCUDA_MPIDense(Mat M,MatType type,MatReuse reuse,Mat *newmat) 1671637a0070SStefano Zampini { 1672637a0070SStefano Zampini Mat B; 1673637a0070SStefano Zampini Mat_MPIDense *m; 1674637a0070SStefano Zampini PetscErrorCode ierr; 1675637a0070SStefano Zampini 1676637a0070SStefano Zampini PetscFunctionBegin; 1677637a0070SStefano Zampini if (reuse == MAT_INITIAL_MATRIX) { 1678637a0070SStefano Zampini ierr = MatDuplicate(M,MAT_COPY_VALUES,newmat);CHKERRQ(ierr); 1679637a0070SStefano Zampini } else if (reuse == MAT_REUSE_MATRIX) { 1680637a0070SStefano Zampini ierr = MatCopy(M,*newmat,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 1681637a0070SStefano Zampini } 1682637a0070SStefano Zampini 1683637a0070SStefano Zampini B = *newmat; 1684637a0070SStefano Zampini ierr = MatBindToCPU_MPIDenseCUDA(B,PETSC_TRUE);CHKERRQ(ierr); 1685637a0070SStefano Zampini ierr = PetscFree(B->defaultvectype);CHKERRQ(ierr); 1686637a0070SStefano Zampini ierr = PetscStrallocpy(VECSTANDARD,&B->defaultvectype);CHKERRQ(ierr); 1687637a0070SStefano Zampini ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIDENSE);CHKERRQ(ierr); 1688637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpidensecuda_mpidense_C",NULL);CHKERRQ(ierr); 1689637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaij_mpidensecuda_C",NULL);CHKERRQ(ierr); 16906718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaijcusparse_mpidensecuda_C",NULL);CHKERRQ(ierr); 1691637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaij_C",NULL);CHKERRQ(ierr); 16926718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaijcusparse_C",NULL);CHKERRQ(ierr); 1693637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArray_C",NULL);CHKERRQ(ierr); 1694637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayRead_C",NULL);CHKERRQ(ierr); 1695637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayWrite_C",NULL);CHKERRQ(ierr); 1696637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArray_C",NULL);CHKERRQ(ierr); 1697637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayRead_C",NULL);CHKERRQ(ierr); 1698637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayWrite_C",NULL);CHKERRQ(ierr); 1699637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAPlaceArray_C",NULL);CHKERRQ(ierr); 1700637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAResetArray_C",NULL);CHKERRQ(ierr); 1701d5ea218eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAReplaceArray_C",NULL);CHKERRQ(ierr); 1702637a0070SStefano Zampini m = (Mat_MPIDense*)(B)->data; 1703637a0070SStefano Zampini if (m->A) { 1704637a0070SStefano Zampini ierr = MatConvert(m->A,MATSEQDENSE,MAT_INPLACE_MATRIX,&m->A);CHKERRQ(ierr); 1705637a0070SStefano Zampini ierr = MatSetUpMultiply_MPIDense(B);CHKERRQ(ierr); 1706637a0070SStefano Zampini } 1707637a0070SStefano Zampini B->ops->bindtocpu = NULL; 1708637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_CPU; 1709637a0070SStefano Zampini PetscFunctionReturn(0); 1710637a0070SStefano Zampini } 1711637a0070SStefano Zampini 1712637a0070SStefano Zampini PetscErrorCode MatConvert_MPIDense_MPIDenseCUDA(Mat M,MatType type,MatReuse reuse,Mat *newmat) 1713637a0070SStefano Zampini { 1714637a0070SStefano Zampini Mat B; 1715637a0070SStefano Zampini Mat_MPIDense *m; 1716637a0070SStefano Zampini PetscErrorCode ierr; 1717637a0070SStefano Zampini 1718637a0070SStefano Zampini PetscFunctionBegin; 1719637a0070SStefano Zampini if (reuse == MAT_INITIAL_MATRIX) { 1720637a0070SStefano Zampini ierr = MatDuplicate(M,MAT_COPY_VALUES,newmat);CHKERRQ(ierr); 1721637a0070SStefano Zampini } else if (reuse == MAT_REUSE_MATRIX) { 1722637a0070SStefano Zampini ierr = MatCopy(M,*newmat,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 1723637a0070SStefano Zampini } 1724637a0070SStefano Zampini 1725637a0070SStefano Zampini B = *newmat; 1726637a0070SStefano Zampini ierr = PetscFree(B->defaultvectype);CHKERRQ(ierr); 1727637a0070SStefano Zampini ierr = PetscStrallocpy(VECCUDA,&B->defaultvectype);CHKERRQ(ierr); 1728637a0070SStefano Zampini ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIDENSECUDA);CHKERRQ(ierr); 1729637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpidensecuda_mpidense_C", MatConvert_MPIDenseCUDA_MPIDense);CHKERRQ(ierr); 1730637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaij_mpidensecuda_C", MatProductSetFromOptions_MPIAIJ_MPIDense);CHKERRQ(ierr); 17316718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpiaijcusparse_mpidensecuda_C",MatProductSetFromOptions_MPIAIJ_MPIDense);CHKERRQ(ierr); 1732637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaij_C", MatProductSetFromOptions_MPIDense_MPIAIJ);CHKERRQ(ierr); 17336718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatProductSetFromOptions_mpidensecuda_mpiaijcusparse_C",MatProductSetFromOptions_MPIDense_MPIAIJ);CHKERRQ(ierr); 1734637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArray_C", MatDenseCUDAGetArray_MPIDenseCUDA);CHKERRQ(ierr); 1735637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayRead_C", MatDenseCUDAGetArrayRead_MPIDenseCUDA);CHKERRQ(ierr); 1736637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAGetArrayWrite_C", MatDenseCUDAGetArrayWrite_MPIDenseCUDA);CHKERRQ(ierr); 1737637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArray_C", MatDenseCUDARestoreArray_MPIDenseCUDA);CHKERRQ(ierr); 1738637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayRead_C", MatDenseCUDARestoreArrayRead_MPIDenseCUDA);CHKERRQ(ierr); 1739637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDARestoreArrayWrite_C", MatDenseCUDARestoreArrayWrite_MPIDenseCUDA);CHKERRQ(ierr); 1740637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAPlaceArray_C", MatDenseCUDAPlaceArray_MPIDenseCUDA);CHKERRQ(ierr); 1741637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAResetArray_C", MatDenseCUDAResetArray_MPIDenseCUDA);CHKERRQ(ierr); 1742d5ea218eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatDenseCUDAReplaceArray_C", MatDenseCUDAReplaceArray_MPIDenseCUDA);CHKERRQ(ierr); 1743f5ff9c66SStefano Zampini m = (Mat_MPIDense*)(B->data); 1744637a0070SStefano Zampini if (m->A) { 1745637a0070SStefano Zampini ierr = MatConvert(m->A,MATSEQDENSECUDA,MAT_INPLACE_MATRIX,&m->A);CHKERRQ(ierr); 1746637a0070SStefano Zampini ierr = MatSetUpMultiply_MPIDense(B);CHKERRQ(ierr); 1747637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_BOTH; 1748637a0070SStefano Zampini } else { 1749637a0070SStefano Zampini B->offloadmask = PETSC_OFFLOAD_UNALLOCATED; 1750637a0070SStefano Zampini } 1751637a0070SStefano Zampini ierr = MatBindToCPU_MPIDenseCUDA(B,PETSC_FALSE);CHKERRQ(ierr); 1752637a0070SStefano Zampini 1753637a0070SStefano Zampini B->ops->bindtocpu = MatBindToCPU_MPIDenseCUDA; 1754637a0070SStefano Zampini PetscFunctionReturn(0); 1755637a0070SStefano Zampini } 1756637a0070SStefano Zampini #endif 1757637a0070SStefano Zampini 17586947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVec_MPIDense(Mat A,PetscInt col,Vec *v) 17596947451fSStefano Zampini { 17606947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17616947451fSStefano Zampini PetscErrorCode ierr; 17626947451fSStefano Zampini PetscInt lda; 17636947451fSStefano Zampini 17646947451fSStefano Zampini PetscFunctionBegin; 1765616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1766616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 17676947451fSStefano Zampini if (!a->cvec) { 17686947451fSStefano Zampini ierr = VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr); 17696947451fSStefano Zampini } 17706947451fSStefano Zampini a->vecinuse = col + 1; 17716947451fSStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 17726947451fSStefano Zampini ierr = MatDenseGetArray(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 17736947451fSStefano Zampini ierr = VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr); 17746947451fSStefano Zampini *v = a->cvec; 17756947451fSStefano Zampini PetscFunctionReturn(0); 17766947451fSStefano Zampini } 17776947451fSStefano Zampini 17786947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVec_MPIDense(Mat A,PetscInt col,Vec *v) 17796947451fSStefano Zampini { 17806947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17816947451fSStefano Zampini PetscErrorCode ierr; 17826947451fSStefano Zampini 17836947451fSStefano Zampini PetscFunctionBegin; 17845ea7661aSPierre Jolivet if (!a->vecinuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 17856947451fSStefano Zampini if (!a->cvec) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing internal column vector"); 17866947451fSStefano Zampini a->vecinuse = 0; 17876947451fSStefano Zampini ierr = MatDenseRestoreArray(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 17886947451fSStefano Zampini ierr = VecResetArray(a->cvec);CHKERRQ(ierr); 17896947451fSStefano Zampini *v = NULL; 17906947451fSStefano Zampini PetscFunctionReturn(0); 17916947451fSStefano Zampini } 17926947451fSStefano Zampini 17936947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecRead_MPIDense(Mat A,PetscInt col,Vec *v) 17946947451fSStefano Zampini { 17956947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 17966947451fSStefano Zampini PetscErrorCode ierr; 17976947451fSStefano Zampini PetscInt lda; 17986947451fSStefano Zampini 17996947451fSStefano Zampini PetscFunctionBegin; 1800616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1801616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 18026947451fSStefano Zampini if (!a->cvec) { 18036947451fSStefano Zampini ierr = VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr); 18046947451fSStefano Zampini } 18056947451fSStefano Zampini a->vecinuse = col + 1; 18066947451fSStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 18076947451fSStefano Zampini ierr = MatDenseGetArrayRead(a->A,&a->ptrinuse);CHKERRQ(ierr); 18086947451fSStefano Zampini ierr = VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr); 18096947451fSStefano Zampini ierr = VecLockReadPush(a->cvec);CHKERRQ(ierr); 18106947451fSStefano Zampini *v = a->cvec; 18116947451fSStefano Zampini PetscFunctionReturn(0); 18126947451fSStefano Zampini } 18136947451fSStefano Zampini 18146947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecRead_MPIDense(Mat A,PetscInt col,Vec *v) 18156947451fSStefano Zampini { 18166947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 18176947451fSStefano Zampini PetscErrorCode ierr; 18186947451fSStefano Zampini 18196947451fSStefano Zampini PetscFunctionBegin; 1820616b8fbbSStefano Zampini if (!a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 1821616b8fbbSStefano Zampini if (!a->cvec) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 18226947451fSStefano Zampini a->vecinuse = 0; 18236947451fSStefano Zampini ierr = MatDenseRestoreArrayRead(a->A,&a->ptrinuse);CHKERRQ(ierr); 18246947451fSStefano Zampini ierr = VecLockReadPop(a->cvec);CHKERRQ(ierr); 18256947451fSStefano Zampini ierr = VecResetArray(a->cvec);CHKERRQ(ierr); 18266947451fSStefano Zampini *v = NULL; 18276947451fSStefano Zampini PetscFunctionReturn(0); 18286947451fSStefano Zampini } 18296947451fSStefano Zampini 18306947451fSStefano Zampini PetscErrorCode MatDenseGetColumnVecWrite_MPIDense(Mat A,PetscInt col,Vec *v) 18316947451fSStefano Zampini { 18326947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 18336947451fSStefano Zampini PetscErrorCode ierr; 18346947451fSStefano Zampini PetscInt lda; 18356947451fSStefano Zampini 18366947451fSStefano Zampini PetscFunctionBegin; 1837616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1838616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 18396947451fSStefano Zampini if (!a->cvec) { 18406947451fSStefano Zampini ierr = VecCreateMPIWithArray(PetscObjectComm((PetscObject)A),A->rmap->bs,A->rmap->n,A->rmap->N,NULL,&a->cvec);CHKERRQ(ierr); 18416947451fSStefano Zampini } 18426947451fSStefano Zampini a->vecinuse = col + 1; 18436947451fSStefano Zampini ierr = MatDenseGetLDA(a->A,&lda);CHKERRQ(ierr); 18446947451fSStefano Zampini ierr = MatDenseGetArrayWrite(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 18456947451fSStefano Zampini ierr = VecPlaceArray(a->cvec,a->ptrinuse + (size_t)col * (size_t)lda);CHKERRQ(ierr); 18466947451fSStefano Zampini *v = a->cvec; 18476947451fSStefano Zampini PetscFunctionReturn(0); 18486947451fSStefano Zampini } 18496947451fSStefano Zampini 18506947451fSStefano Zampini PetscErrorCode MatDenseRestoreColumnVecWrite_MPIDense(Mat A,PetscInt col,Vec *v) 18516947451fSStefano Zampini { 18526947451fSStefano Zampini Mat_MPIDense *a = (Mat_MPIDense*)A->data; 18536947451fSStefano Zampini PetscErrorCode ierr; 18546947451fSStefano Zampini 18556947451fSStefano Zampini PetscFunctionBegin; 1856616b8fbbSStefano Zampini if (!a->vecinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetColumnVec() first"); 1857616b8fbbSStefano Zampini if (!a->cvec) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal column vector"); 18586947451fSStefano Zampini a->vecinuse = 0; 18596947451fSStefano Zampini ierr = MatDenseRestoreArrayWrite(a->A,(PetscScalar**)&a->ptrinuse);CHKERRQ(ierr); 18606947451fSStefano Zampini ierr = VecResetArray(a->cvec);CHKERRQ(ierr); 18616947451fSStefano Zampini *v = NULL; 18626947451fSStefano Zampini PetscFunctionReturn(0); 18636947451fSStefano Zampini } 18646947451fSStefano Zampini 18655ea7661aSPierre Jolivet PetscErrorCode MatDenseGetSubMatrix_MPIDense(Mat A,PetscInt cbegin,PetscInt cend,Mat *v) 18665ea7661aSPierre Jolivet { 18675ea7661aSPierre Jolivet Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1868616b8fbbSStefano Zampini Mat_MPIDense *c; 18695ea7661aSPierre Jolivet PetscErrorCode ierr; 1870616b8fbbSStefano Zampini MPI_Comm comm; 1871616b8fbbSStefano Zampini PetscBool setup = PETSC_FALSE; 18725ea7661aSPierre Jolivet 18735ea7661aSPierre Jolivet PetscFunctionBegin; 1874616b8fbbSStefano Zampini ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 1875616b8fbbSStefano Zampini if (a->vecinuse) SETERRQ(comm,PETSC_ERR_ORDER,"Need to call MatDenseRestoreColumnVec() first"); 1876616b8fbbSStefano Zampini if (a->matinuse) SETERRQ(comm,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 18775ea7661aSPierre Jolivet if (!a->cmat) { 1878616b8fbbSStefano Zampini setup = PETSC_TRUE; 1879616b8fbbSStefano Zampini ierr = MatCreate(comm,&a->cmat);CHKERRQ(ierr); 1880616b8fbbSStefano Zampini ierr = PetscLogObjectParent((PetscObject)A,(PetscObject)a->cmat);CHKERRQ(ierr); 1881616b8fbbSStefano Zampini ierr = MatSetType(a->cmat,((PetscObject)A)->type_name);CHKERRQ(ierr); 1882616b8fbbSStefano Zampini ierr = PetscLayoutReference(A->rmap,&a->cmat->rmap);CHKERRQ(ierr); 1883616b8fbbSStefano Zampini ierr = PetscLayoutSetSize(a->cmat->cmap,cend-cbegin);CHKERRQ(ierr); 1884616b8fbbSStefano Zampini ierr = PetscLayoutSetUp(a->cmat->cmap);CHKERRQ(ierr); 1885616b8fbbSStefano Zampini } else if (cend-cbegin != a->cmat->cmap->N) { 1886616b8fbbSStefano Zampini setup = PETSC_TRUE; 1887616b8fbbSStefano Zampini ierr = PetscLayoutDestroy(&a->cmat->cmap);CHKERRQ(ierr); 1888616b8fbbSStefano Zampini ierr = PetscLayoutCreate(comm,&a->cmat->cmap);CHKERRQ(ierr); 1889616b8fbbSStefano Zampini ierr = PetscLayoutSetSize(a->cmat->cmap,cend-cbegin);CHKERRQ(ierr); 1890616b8fbbSStefano Zampini ierr = PetscLayoutSetUp(a->cmat->cmap);CHKERRQ(ierr); 18915ea7661aSPierre Jolivet } 1892616b8fbbSStefano Zampini c = (Mat_MPIDense*)a->cmat->data; 1893616b8fbbSStefano Zampini if (c->A) SETERRQ(comm,PETSC_ERR_ORDER,"Need to call MatDenseRestoreSubMatrix() first"); 1894616b8fbbSStefano Zampini ierr = MatDenseGetSubMatrix(a->A,cbegin,cend,&c->A);CHKERRQ(ierr); 1895616b8fbbSStefano Zampini if (setup) { /* do we really need this? */ 1896616b8fbbSStefano Zampini ierr = MatSetUpMultiply_MPIDense(a->cmat);CHKERRQ(ierr); 1897616b8fbbSStefano Zampini } 1898616b8fbbSStefano Zampini a->cmat->preallocated = PETSC_TRUE; 1899616b8fbbSStefano Zampini a->cmat->assembled = PETSC_TRUE; 19005ea7661aSPierre Jolivet a->matinuse = cbegin + 1; 19015ea7661aSPierre Jolivet *v = a->cmat; 19025ea7661aSPierre Jolivet PetscFunctionReturn(0); 19035ea7661aSPierre Jolivet } 19045ea7661aSPierre Jolivet 19055ea7661aSPierre Jolivet PetscErrorCode MatDenseRestoreSubMatrix_MPIDense(Mat A,Mat *v) 19065ea7661aSPierre Jolivet { 19075ea7661aSPierre Jolivet Mat_MPIDense *a = (Mat_MPIDense*)A->data; 1908616b8fbbSStefano Zampini Mat_MPIDense *c; 19095ea7661aSPierre Jolivet PetscErrorCode ierr; 19105ea7661aSPierre Jolivet 19115ea7661aSPierre Jolivet PetscFunctionBegin; 1912616b8fbbSStefano Zampini if (!a->matinuse) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ORDER,"Need to call MatDenseGetSubMatrix() first"); 1913616b8fbbSStefano Zampini if (!a->cmat) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"Missing internal matrix"); 1914616b8fbbSStefano Zampini if (*v != a->cmat) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Not the matrix obtained from MatDenseGetSubMatrix()"); 19155ea7661aSPierre Jolivet a->matinuse = 0; 1916616b8fbbSStefano Zampini c = (Mat_MPIDense*)a->cmat->data; 1917616b8fbbSStefano Zampini ierr = MatDenseRestoreSubMatrix(a->A,&c->A);CHKERRQ(ierr); 19185ea7661aSPierre Jolivet *v = NULL; 19195ea7661aSPierre Jolivet PetscFunctionReturn(0); 19205ea7661aSPierre Jolivet } 19215ea7661aSPierre Jolivet 1922002bc6daSRichard Tran Mills /*MC 1923002bc6daSRichard Tran Mills MATMPIDENSE - MATMPIDENSE = "mpidense" - A matrix type to be used for distributed dense matrices. 1924002bc6daSRichard Tran Mills 1925002bc6daSRichard Tran Mills Options Database Keys: 1926002bc6daSRichard Tran Mills . -mat_type mpidense - sets the matrix type to "mpidense" during a call to MatSetFromOptions() 1927002bc6daSRichard Tran Mills 1928002bc6daSRichard Tran Mills Level: beginner 1929002bc6daSRichard Tran Mills 1930002bc6daSRichard Tran Mills .seealso: MatCreateDense() 1931002bc6daSRichard Tran Mills 1932002bc6daSRichard Tran Mills M*/ 19338cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIDense(Mat mat) 1934273d9f13SBarry Smith { 1935273d9f13SBarry Smith Mat_MPIDense *a; 1936dfbe8321SBarry Smith PetscErrorCode ierr; 1937273d9f13SBarry Smith 1938273d9f13SBarry Smith PetscFunctionBegin; 1939b00a9115SJed Brown ierr = PetscNewLog(mat,&a);CHKERRQ(ierr); 1940b0a32e0cSBarry Smith mat->data = (void*)a; 1941273d9f13SBarry Smith ierr = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1942273d9f13SBarry Smith 1943273d9f13SBarry Smith mat->insertmode = NOT_SET_VALUES; 1944273d9f13SBarry Smith 1945273d9f13SBarry Smith /* build cache for off array entries formed */ 1946273d9f13SBarry Smith a->donotstash = PETSC_FALSE; 19472205254eSKarl Rupp 1948ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)mat),1,&mat->stash);CHKERRQ(ierr); 1949273d9f13SBarry Smith 1950273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 1951f4259b30SLisandro Dalcin a->lvec = NULL; 1952f4259b30SLisandro Dalcin a->Mvctx = NULL; 1953273d9f13SBarry Smith a->roworiented = PETSC_TRUE; 1954273d9f13SBarry Smith 195549a6ff4bSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetLDA_C",MatDenseGetLDA_MPIDense);CHKERRQ(ierr); 1956ad16ce7aSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseSetLDA_C",MatDenseSetLDA_MPIDense);CHKERRQ(ierr); 1957bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArray_C",MatDenseGetArray_MPIDense);CHKERRQ(ierr); 19588572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArray_C",MatDenseRestoreArray_MPIDense);CHKERRQ(ierr); 19598572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayRead_C",MatDenseGetArrayRead_MPIDense);CHKERRQ(ierr); 19608572280aSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayRead_C",MatDenseRestoreArrayRead_MPIDense);CHKERRQ(ierr); 19616947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetArrayWrite_C",MatDenseGetArrayWrite_MPIDense);CHKERRQ(ierr); 19626947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreArrayWrite_C",MatDenseRestoreArrayWrite_MPIDense);CHKERRQ(ierr); 1963d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDensePlaceArray_C",MatDensePlaceArray_MPIDense);CHKERRQ(ierr); 1964d3042a70SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseResetArray_C",MatDenseResetArray_MPIDense);CHKERRQ(ierr); 1965d5ea218eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseReplaceArray_C",MatDenseReplaceArray_MPIDense);CHKERRQ(ierr); 19666947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVec_C",MatDenseGetColumnVec_MPIDense);CHKERRQ(ierr); 19676947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVec_C",MatDenseRestoreColumnVec_MPIDense);CHKERRQ(ierr); 19686947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecRead_C",MatDenseGetColumnVecRead_MPIDense);CHKERRQ(ierr); 19696947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecRead_C",MatDenseRestoreColumnVecRead_MPIDense);CHKERRQ(ierr); 19706947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumnVecWrite_C",MatDenseGetColumnVecWrite_MPIDense);CHKERRQ(ierr); 19716947451fSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumnVecWrite_C",MatDenseRestoreColumnVecWrite_MPIDense);CHKERRQ(ierr); 19725ea7661aSPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetSubMatrix_C",MatDenseGetSubMatrix_MPIDense);CHKERRQ(ierr); 19735ea7661aSPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreSubMatrix_C",MatDenseRestoreSubMatrix_MPIDense);CHKERRQ(ierr); 19744e29119aSPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpiaij_mpidense_C",MatConvert_MPIAIJ_MPIDense);CHKERRQ(ierr); 19754e29119aSPierre Jolivet ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_mpiaij_C",MatConvert_MPIDense_MPIAIJ);CHKERRQ(ierr); 19768baccfbdSHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 19778baccfbdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_elemental_C",MatConvert_MPIDense_Elemental);CHKERRQ(ierr); 19788baccfbdSHong Zhang #endif 1979d24d4204SJose E. Roman #if defined(PETSC_HAVE_SCALAPACK) 1980d24d4204SJose E. Roman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_scalapack_C",MatConvert_Dense_ScaLAPACK);CHKERRQ(ierr); 1981d24d4204SJose E. Roman #endif 1982637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 1983637a0070SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpidense_mpidensecuda_C",MatConvert_MPIDense_MPIDenseCUDA);CHKERRQ(ierr); 1984637a0070SStefano Zampini #endif 1985bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIDenseSetPreallocation_C",MatMPIDenseSetPreallocation_MPIDense);CHKERRQ(ierr); 19864222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaij_mpidense_C",MatProductSetFromOptions_MPIAIJ_MPIDense);CHKERRQ(ierr); 19874222ddf1SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaij_C",MatProductSetFromOptions_MPIDense_MPIAIJ);CHKERRQ(ierr); 19886718818eSStefano Zampini #if defined(PETSC_HAVE_CUDA) 19896718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpiaijcusparse_mpidense_C",MatProductSetFromOptions_MPIAIJ_MPIDense);CHKERRQ(ierr); 19906718818eSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatProductSetFromOptions_mpidense_mpiaijcusparse_C",MatProductSetFromOptions_MPIDense_MPIAIJ);CHKERRQ(ierr); 19916718818eSStefano Zampini #endif 19928949adfdSHong Zhang 1993af53bab2SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseGetColumn_C",MatDenseGetColumn_MPIDense);CHKERRQ(ierr); 1994af53bab2SHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDenseRestoreColumn_C",MatDenseRestoreColumn_MPIDense);CHKERRQ(ierr); 199538aed534SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)mat,MATMPIDENSE);CHKERRQ(ierr); 1996273d9f13SBarry Smith PetscFunctionReturn(0); 1997273d9f13SBarry Smith } 1998273d9f13SBarry Smith 1999209238afSKris Buschelman /*MC 2000637a0070SStefano Zampini MATMPIDENSECUDA - MATMPIDENSECUDA = "mpidensecuda" - A matrix type to be used for distributed dense matrices on GPUs. 2001637a0070SStefano Zampini 2002637a0070SStefano Zampini Options Database Keys: 2003637a0070SStefano Zampini . -mat_type mpidensecuda - sets the matrix type to "mpidensecuda" during a call to MatSetFromOptions() 2004637a0070SStefano Zampini 2005637a0070SStefano Zampini Level: beginner 2006637a0070SStefano Zampini 2007637a0070SStefano Zampini .seealso: 2008637a0070SStefano Zampini 2009637a0070SStefano Zampini M*/ 2010637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 2011637a0070SStefano Zampini PETSC_EXTERN PetscErrorCode MatCreate_MPIDenseCUDA(Mat B) 2012637a0070SStefano Zampini { 2013637a0070SStefano Zampini PetscErrorCode ierr; 2014637a0070SStefano Zampini 2015637a0070SStefano Zampini PetscFunctionBegin; 201605035670SJunchao Zhang ierr = PetscCUDAInitializeCheck();CHKERRQ(ierr); 2017637a0070SStefano Zampini ierr = MatCreate_MPIDense(B);CHKERRQ(ierr); 2018637a0070SStefano Zampini ierr = MatConvert_MPIDense_MPIDenseCUDA(B,MATMPIDENSECUDA,MAT_INPLACE_MATRIX,&B);CHKERRQ(ierr); 2019637a0070SStefano Zampini PetscFunctionReturn(0); 2020637a0070SStefano Zampini } 2021637a0070SStefano Zampini #endif 2022637a0070SStefano Zampini 2023637a0070SStefano Zampini /*MC 2024002d173eSKris Buschelman MATDENSE - MATDENSE = "dense" - A matrix type to be used for dense matrices. 2025209238afSKris Buschelman 2026209238afSKris Buschelman This matrix type is identical to MATSEQDENSE when constructed with a single process communicator, 2027209238afSKris Buschelman and MATMPIDENSE otherwise. 2028209238afSKris Buschelman 2029209238afSKris Buschelman Options Database Keys: 2030209238afSKris Buschelman . -mat_type dense - sets the matrix type to "dense" during a call to MatSetFromOptions() 2031209238afSKris Buschelman 2032209238afSKris Buschelman Level: beginner 2033209238afSKris Buschelman 20346947451fSStefano Zampini .seealso: MATSEQDENSE,MATMPIDENSE,MATDENSECUDA 20356947451fSStefano Zampini M*/ 20366947451fSStefano Zampini 20376947451fSStefano Zampini /*MC 20386947451fSStefano Zampini MATDENSECUDA - MATDENSECUDA = "densecuda" - A matrix type to be used for dense matrices on GPUs. 20396947451fSStefano Zampini 20406947451fSStefano Zampini This matrix type is identical to MATSEQDENSECUDA when constructed with a single process communicator, 20416947451fSStefano Zampini and MATMPIDENSECUDA otherwise. 20426947451fSStefano Zampini 20436947451fSStefano Zampini Options Database Keys: 20446947451fSStefano Zampini . -mat_type densecuda - sets the matrix type to "densecuda" during a call to MatSetFromOptions() 20456947451fSStefano Zampini 20466947451fSStefano Zampini Level: beginner 20476947451fSStefano Zampini 20486947451fSStefano Zampini .seealso: MATSEQDENSECUDA,MATMPIDENSECUDA,MATDENSE 2049209238afSKris Buschelman M*/ 2050209238afSKris Buschelman 2051273d9f13SBarry Smith /*@C 2052273d9f13SBarry Smith MatMPIDenseSetPreallocation - Sets the array used to store the matrix entries 2053273d9f13SBarry Smith 20548f490ea3SStefano Zampini Collective 2055273d9f13SBarry Smith 2056273d9f13SBarry Smith Input Parameters: 20571c4f3114SJed Brown . B - the matrix 20580298fd71SBarry Smith - data - optional location of matrix data. Set data=NULL for PETSc 2059273d9f13SBarry Smith to control all matrix memory allocation. 2060273d9f13SBarry Smith 2061273d9f13SBarry Smith Notes: 2062273d9f13SBarry Smith The dense format is fully compatible with standard Fortran 77 2063273d9f13SBarry Smith storage by columns. 2064273d9f13SBarry Smith 2065273d9f13SBarry Smith The data input variable is intended primarily for Fortran programmers 2066273d9f13SBarry Smith who wish to allocate their own matrix memory space. Most users should 20670298fd71SBarry Smith set data=NULL. 2068273d9f13SBarry Smith 2069273d9f13SBarry Smith Level: intermediate 2070273d9f13SBarry Smith 2071273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 2072273d9f13SBarry Smith @*/ 20731c4f3114SJed Brown PetscErrorCode MatMPIDenseSetPreallocation(Mat B,PetscScalar *data) 2074273d9f13SBarry Smith { 20754ac538c5SBarry Smith PetscErrorCode ierr; 2076273d9f13SBarry Smith 2077273d9f13SBarry Smith PetscFunctionBegin; 2078d5ea218eSStefano Zampini PetscValidHeaderSpecific(B,MAT_CLASSID,1); 20791c4f3114SJed Brown ierr = PetscTryMethod(B,"MatMPIDenseSetPreallocation_C",(Mat,PetscScalar*),(B,data));CHKERRQ(ierr); 2080273d9f13SBarry Smith PetscFunctionReturn(0); 2081273d9f13SBarry Smith } 2082273d9f13SBarry Smith 2083d3042a70SBarry Smith /*@ 2084637a0070SStefano Zampini MatDensePlaceArray - Allows one to replace the array in a dense matrix with an 2085d3042a70SBarry Smith array provided by the user. This is useful to avoid copying an array 2086d3042a70SBarry Smith into a matrix 2087d3042a70SBarry Smith 2088d3042a70SBarry Smith Not Collective 2089d3042a70SBarry Smith 2090d3042a70SBarry Smith Input Parameters: 2091d3042a70SBarry Smith + mat - the matrix 2092d3042a70SBarry Smith - array - the array in column major order 2093d3042a70SBarry Smith 2094d3042a70SBarry Smith Notes: 2095d3042a70SBarry Smith You can return to the original array with a call to MatDenseResetArray(). The user is responsible for freeing this array; it will not be 2096d3042a70SBarry Smith freed when the matrix is destroyed. 2097d3042a70SBarry Smith 2098d3042a70SBarry Smith Level: developer 2099d3042a70SBarry Smith 2100d3042a70SBarry Smith .seealso: MatDenseGetArray(), MatDenseResetArray(), VecPlaceArray(), VecGetArray(), VecRestoreArray(), VecReplaceArray(), VecResetArray() 2101d3042a70SBarry Smith 2102d3042a70SBarry Smith @*/ 2103637a0070SStefano Zampini PetscErrorCode MatDensePlaceArray(Mat mat,const PetscScalar *array) 2104d3042a70SBarry Smith { 2105d3042a70SBarry Smith PetscErrorCode ierr; 2106637a0070SStefano Zampini 2107d3042a70SBarry Smith PetscFunctionBegin; 2108d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2109d3042a70SBarry Smith ierr = PetscUseMethod(mat,"MatDensePlaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr); 2110d3042a70SBarry Smith ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 2111637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 2112637a0070SStefano Zampini mat->offloadmask = PETSC_OFFLOAD_CPU; 2113637a0070SStefano Zampini #endif 2114d3042a70SBarry Smith PetscFunctionReturn(0); 2115d3042a70SBarry Smith } 2116d3042a70SBarry Smith 2117d3042a70SBarry Smith /*@ 2118d3042a70SBarry Smith MatDenseResetArray - Resets the matrix array to that it previously had before the call to MatDensePlaceArray() 2119d3042a70SBarry Smith 2120d3042a70SBarry Smith Not Collective 2121d3042a70SBarry Smith 2122d3042a70SBarry Smith Input Parameters: 2123d3042a70SBarry Smith . mat - the matrix 2124d3042a70SBarry Smith 2125d3042a70SBarry Smith Notes: 2126d3042a70SBarry Smith You can only call this after a call to MatDensePlaceArray() 2127d3042a70SBarry Smith 2128d3042a70SBarry Smith Level: developer 2129d3042a70SBarry Smith 2130d3042a70SBarry Smith .seealso: MatDenseGetArray(), MatDensePlaceArray(), VecPlaceArray(), VecGetArray(), VecRestoreArray(), VecReplaceArray(), VecResetArray() 2131d3042a70SBarry Smith 2132d3042a70SBarry Smith @*/ 2133d3042a70SBarry Smith PetscErrorCode MatDenseResetArray(Mat mat) 2134d3042a70SBarry Smith { 2135d3042a70SBarry Smith PetscErrorCode ierr; 2136637a0070SStefano Zampini 2137d3042a70SBarry Smith PetscFunctionBegin; 2138d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2139d3042a70SBarry Smith ierr = PetscUseMethod(mat,"MatDenseResetArray_C",(Mat),(mat));CHKERRQ(ierr); 2140d3042a70SBarry Smith ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 2141d3042a70SBarry Smith PetscFunctionReturn(0); 2142d3042a70SBarry Smith } 2143d3042a70SBarry Smith 2144d5ea218eSStefano Zampini /*@ 2145d5ea218eSStefano Zampini MatDenseReplaceArray - Allows one to replace the array in a dense matrix with an 2146d5ea218eSStefano Zampini array provided by the user. This is useful to avoid copying an array 2147d5ea218eSStefano Zampini into a matrix 2148d5ea218eSStefano Zampini 2149d5ea218eSStefano Zampini Not Collective 2150d5ea218eSStefano Zampini 2151d5ea218eSStefano Zampini Input Parameters: 2152d5ea218eSStefano Zampini + mat - the matrix 2153d5ea218eSStefano Zampini - array - the array in column major order 2154d5ea218eSStefano Zampini 2155d5ea218eSStefano Zampini Notes: 2156d5ea218eSStefano Zampini The memory passed in MUST be obtained with PetscMalloc() and CANNOT be 2157d5ea218eSStefano Zampini freed by the user. It will be freed when the matrix is destroyed. 2158d5ea218eSStefano Zampini 2159d5ea218eSStefano Zampini Level: developer 2160d5ea218eSStefano Zampini 2161d5ea218eSStefano Zampini .seealso: MatDenseGetArray(), VecReplaceArray() 2162d5ea218eSStefano Zampini @*/ 2163d5ea218eSStefano Zampini PetscErrorCode MatDenseReplaceArray(Mat mat,const PetscScalar *array) 2164d5ea218eSStefano Zampini { 2165d5ea218eSStefano Zampini PetscErrorCode ierr; 2166d5ea218eSStefano Zampini 2167d5ea218eSStefano Zampini PetscFunctionBegin; 2168d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2169d5ea218eSStefano Zampini ierr = PetscUseMethod(mat,"MatDenseReplaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr); 2170d5ea218eSStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 2171d5ea218eSStefano Zampini #if defined(PETSC_HAVE_CUDA) 2172d5ea218eSStefano Zampini mat->offloadmask = PETSC_OFFLOAD_CPU; 2173d5ea218eSStefano Zampini #endif 2174d5ea218eSStefano Zampini PetscFunctionReturn(0); 2175d5ea218eSStefano Zampini } 2176d5ea218eSStefano Zampini 2177637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 21788965ea79SLois Curfman McInnes /*@C 2179637a0070SStefano Zampini MatDenseCUDAPlaceArray - Allows one to replace the GPU array in a dense matrix with an 2180637a0070SStefano Zampini array provided by the user. This is useful to avoid copying an array 2181637a0070SStefano Zampini into a matrix 2182637a0070SStefano Zampini 2183637a0070SStefano Zampini Not Collective 2184637a0070SStefano Zampini 2185637a0070SStefano Zampini Input Parameters: 2186637a0070SStefano Zampini + mat - the matrix 2187637a0070SStefano Zampini - array - the array in column major order 2188637a0070SStefano Zampini 2189637a0070SStefano Zampini Notes: 2190637a0070SStefano Zampini You can return to the original array with a call to MatDenseCUDAResetArray(). The user is responsible for freeing this array; it will not be 2191637a0070SStefano Zampini freed when the matrix is destroyed. The array must have been allocated with cudaMalloc(). 2192637a0070SStefano Zampini 2193637a0070SStefano Zampini Level: developer 2194637a0070SStefano Zampini 2195637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDAResetArray() 2196637a0070SStefano Zampini @*/ 2197637a0070SStefano Zampini PetscErrorCode MatDenseCUDAPlaceArray(Mat mat,const PetscScalar *array) 2198637a0070SStefano Zampini { 2199637a0070SStefano Zampini PetscErrorCode ierr; 2200637a0070SStefano Zampini 2201637a0070SStefano Zampini PetscFunctionBegin; 2202d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2203637a0070SStefano Zampini ierr = PetscUseMethod(mat,"MatDenseCUDAPlaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr); 2204637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 2205637a0070SStefano Zampini mat->offloadmask = PETSC_OFFLOAD_GPU; 2206637a0070SStefano Zampini PetscFunctionReturn(0); 2207637a0070SStefano Zampini } 2208637a0070SStefano Zampini 2209637a0070SStefano Zampini /*@C 2210637a0070SStefano Zampini MatDenseCUDAResetArray - Resets the matrix array to that it previously had before the call to MatDenseCUDAPlaceArray() 2211637a0070SStefano Zampini 2212637a0070SStefano Zampini Not Collective 2213637a0070SStefano Zampini 2214637a0070SStefano Zampini Input Parameters: 2215637a0070SStefano Zampini . mat - the matrix 2216637a0070SStefano Zampini 2217637a0070SStefano Zampini Notes: 2218637a0070SStefano Zampini You can only call this after a call to MatDenseCUDAPlaceArray() 2219637a0070SStefano Zampini 2220637a0070SStefano Zampini Level: developer 2221637a0070SStefano Zampini 2222637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDAPlaceArray() 2223637a0070SStefano Zampini 2224637a0070SStefano Zampini @*/ 2225637a0070SStefano Zampini PetscErrorCode MatDenseCUDAResetArray(Mat mat) 2226637a0070SStefano Zampini { 2227637a0070SStefano Zampini PetscErrorCode ierr; 2228637a0070SStefano Zampini 2229637a0070SStefano Zampini PetscFunctionBegin; 2230d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2231637a0070SStefano Zampini ierr = PetscUseMethod(mat,"MatDenseCUDAResetArray_C",(Mat),(mat));CHKERRQ(ierr); 2232637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 2233637a0070SStefano Zampini PetscFunctionReturn(0); 2234637a0070SStefano Zampini } 2235637a0070SStefano Zampini 2236637a0070SStefano Zampini /*@C 2237d5ea218eSStefano Zampini MatDenseCUDAReplaceArray - Allows one to replace the GPU array in a dense matrix with an 2238d5ea218eSStefano Zampini array provided by the user. This is useful to avoid copying an array 2239d5ea218eSStefano Zampini into a matrix 2240d5ea218eSStefano Zampini 2241d5ea218eSStefano Zampini Not Collective 2242d5ea218eSStefano Zampini 2243d5ea218eSStefano Zampini Input Parameters: 2244d5ea218eSStefano Zampini + mat - the matrix 2245d5ea218eSStefano Zampini - array - the array in column major order 2246d5ea218eSStefano Zampini 2247d5ea218eSStefano Zampini Notes: 2248d5ea218eSStefano Zampini This permanently replaces the GPU array and frees the memory associated with the old GPU array. 2249d5ea218eSStefano Zampini The memory passed in CANNOT be freed by the user. It will be freed 2250d5ea218eSStefano Zampini when the matrix is destroyed. The array should respect the matrix leading dimension. 2251d5ea218eSStefano Zampini 2252d5ea218eSStefano Zampini Level: developer 2253d5ea218eSStefano Zampini 2254d5ea218eSStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDAPlaceArray(), MatDenseCUDAResetArray() 2255d5ea218eSStefano Zampini @*/ 2256d5ea218eSStefano Zampini PetscErrorCode MatDenseCUDAReplaceArray(Mat mat,const PetscScalar *array) 2257d5ea218eSStefano Zampini { 2258d5ea218eSStefano Zampini PetscErrorCode ierr; 2259d5ea218eSStefano Zampini 2260d5ea218eSStefano Zampini PetscFunctionBegin; 2261d5ea218eSStefano Zampini PetscValidHeaderSpecific(mat,MAT_CLASSID,1); 2262d5ea218eSStefano Zampini ierr = PetscUseMethod(mat,"MatDenseCUDAReplaceArray_C",(Mat,const PetscScalar*),(mat,array));CHKERRQ(ierr); 2263d5ea218eSStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)mat);CHKERRQ(ierr); 2264d5ea218eSStefano Zampini mat->offloadmask = PETSC_OFFLOAD_GPU; 2265d5ea218eSStefano Zampini PetscFunctionReturn(0); 2266d5ea218eSStefano Zampini } 2267d5ea218eSStefano Zampini 2268d5ea218eSStefano Zampini /*@C 2269637a0070SStefano Zampini MatDenseCUDAGetArrayWrite - Provides write access to the CUDA buffer inside a dense matrix. 2270637a0070SStefano Zampini 2271637a0070SStefano Zampini Not Collective 2272637a0070SStefano Zampini 2273637a0070SStefano Zampini Input Parameters: 2274637a0070SStefano Zampini . A - the matrix 2275637a0070SStefano Zampini 2276637a0070SStefano Zampini Output Parameters 2277637a0070SStefano Zampini . array - the GPU array in column major order 2278637a0070SStefano Zampini 2279637a0070SStefano Zampini Notes: 2280637a0070SStefano Zampini The data on the GPU may not be updated due to operations done on the CPU. If you need updated data, use MatDenseCUDAGetArray(). The array must be restored with MatDenseCUDARestoreArrayWrite() when no longer needed. 2281637a0070SStefano Zampini 2282637a0070SStefano Zampini Level: developer 2283637a0070SStefano Zampini 2284637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayRead(), MatDenseCUDARestoreArrayRead() 2285637a0070SStefano Zampini @*/ 2286637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArrayWrite(Mat A, PetscScalar **a) 2287637a0070SStefano Zampini { 2288637a0070SStefano Zampini PetscErrorCode ierr; 2289637a0070SStefano Zampini 2290637a0070SStefano Zampini PetscFunctionBegin; 2291d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2292637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDAGetArrayWrite_C",(Mat,PetscScalar**),(A,a));CHKERRQ(ierr); 2293637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr); 2294637a0070SStefano Zampini PetscFunctionReturn(0); 2295637a0070SStefano Zampini } 2296637a0070SStefano Zampini 2297637a0070SStefano Zampini /*@C 2298637a0070SStefano Zampini MatDenseCUDARestoreArrayWrite - Restore write access to the CUDA buffer inside a dense matrix previously obtained with MatDenseCUDAGetArrayWrite(). 2299637a0070SStefano Zampini 2300637a0070SStefano Zampini Not Collective 2301637a0070SStefano Zampini 2302637a0070SStefano Zampini Input Parameters: 2303637a0070SStefano Zampini + A - the matrix 2304637a0070SStefano Zampini - array - the GPU array in column major order 2305637a0070SStefano Zampini 2306637a0070SStefano Zampini Notes: 2307637a0070SStefano Zampini 2308637a0070SStefano Zampini Level: developer 2309637a0070SStefano Zampini 2310637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead(), MatDenseCUDAGetArrayRead() 2311637a0070SStefano Zampini @*/ 2312637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArrayWrite(Mat A, PetscScalar **a) 2313637a0070SStefano Zampini { 2314637a0070SStefano Zampini PetscErrorCode ierr; 2315637a0070SStefano Zampini 2316637a0070SStefano Zampini PetscFunctionBegin; 2317d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2318637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDARestoreArrayWrite_C",(Mat,PetscScalar**),(A,a));CHKERRQ(ierr); 2319637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr); 2320637a0070SStefano Zampini A->offloadmask = PETSC_OFFLOAD_GPU; 2321637a0070SStefano Zampini PetscFunctionReturn(0); 2322637a0070SStefano Zampini } 2323637a0070SStefano Zampini 2324637a0070SStefano Zampini /*@C 2325637a0070SStefano Zampini MatDenseCUDAGetArrayRead - Provides read-only access to the CUDA buffer inside a dense matrix. The array must be restored with MatDenseCUDARestoreArrayRead() when no longer needed. 2326637a0070SStefano Zampini 2327637a0070SStefano Zampini Not Collective 2328637a0070SStefano Zampini 2329637a0070SStefano Zampini Input Parameters: 2330637a0070SStefano Zampini . A - the matrix 2331637a0070SStefano Zampini 2332637a0070SStefano Zampini Output Parameters 2333637a0070SStefano Zampini . array - the GPU array in column major order 2334637a0070SStefano Zampini 2335637a0070SStefano Zampini Notes: 2336637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). 2337637a0070SStefano Zampini 2338637a0070SStefano Zampini Level: developer 2339637a0070SStefano Zampini 2340637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead() 2341637a0070SStefano Zampini @*/ 2342637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArrayRead(Mat A, const PetscScalar **a) 2343637a0070SStefano Zampini { 2344637a0070SStefano Zampini PetscErrorCode ierr; 2345637a0070SStefano Zampini 2346637a0070SStefano Zampini PetscFunctionBegin; 2347d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2348637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDAGetArrayRead_C",(Mat,const PetscScalar**),(A,a));CHKERRQ(ierr); 2349637a0070SStefano Zampini PetscFunctionReturn(0); 2350637a0070SStefano Zampini } 2351637a0070SStefano Zampini 2352637a0070SStefano Zampini /*@C 2353637a0070SStefano Zampini MatDenseCUDARestoreArrayRead - Restore read-only access to the CUDA buffer inside a dense matrix previously obtained with a call to MatDenseCUDAGetArrayRead(). 2354637a0070SStefano Zampini 2355637a0070SStefano Zampini Not Collective 2356637a0070SStefano Zampini 2357637a0070SStefano Zampini Input Parameters: 2358637a0070SStefano Zampini + A - the matrix 2359637a0070SStefano Zampini - array - the GPU array in column major order 2360637a0070SStefano Zampini 2361637a0070SStefano Zampini Notes: 2362637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). 2363637a0070SStefano Zampini 2364637a0070SStefano Zampini Level: developer 2365637a0070SStefano Zampini 2366637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDAGetArrayRead() 2367637a0070SStefano Zampini @*/ 2368637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArrayRead(Mat A, const PetscScalar **a) 2369637a0070SStefano Zampini { 2370637a0070SStefano Zampini PetscErrorCode ierr; 2371637a0070SStefano Zampini 2372637a0070SStefano Zampini PetscFunctionBegin; 2373637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDARestoreArrayRead_C",(Mat,const PetscScalar**),(A,a));CHKERRQ(ierr); 2374637a0070SStefano Zampini PetscFunctionReturn(0); 2375637a0070SStefano Zampini } 2376637a0070SStefano Zampini 2377637a0070SStefano Zampini /*@C 2378637a0070SStefano Zampini MatDenseCUDAGetArray - Provides access to the CUDA buffer inside a dense matrix. The array must be restored with MatDenseCUDARestoreArray() when no longer needed. 2379637a0070SStefano Zampini 2380637a0070SStefano Zampini Not Collective 2381637a0070SStefano Zampini 2382637a0070SStefano Zampini Input Parameters: 2383637a0070SStefano Zampini . A - the matrix 2384637a0070SStefano Zampini 2385637a0070SStefano Zampini Output Parameters 2386637a0070SStefano Zampini . array - the GPU array in column major order 2387637a0070SStefano Zampini 2388637a0070SStefano Zampini Notes: 2389637a0070SStefano Zampini Data can be copied to the GPU due to operations done on the CPU. If you need write only access, use MatDenseCUDAGetArrayWrite(). For read-only access, use MatDenseCUDAGetArrayRead(). 2390637a0070SStefano Zampini 2391637a0070SStefano Zampini Level: developer 2392637a0070SStefano Zampini 2393637a0070SStefano Zampini .seealso: MatDenseCUDAGetArrayRead(), MatDenseCUDARestoreArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead() 2394637a0070SStefano Zampini @*/ 2395637a0070SStefano Zampini PetscErrorCode MatDenseCUDAGetArray(Mat A, PetscScalar **a) 2396637a0070SStefano Zampini { 2397637a0070SStefano Zampini PetscErrorCode ierr; 2398637a0070SStefano Zampini 2399637a0070SStefano Zampini PetscFunctionBegin; 2400d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2401637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDAGetArray_C",(Mat,PetscScalar**),(A,a));CHKERRQ(ierr); 2402637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr); 2403637a0070SStefano Zampini PetscFunctionReturn(0); 2404637a0070SStefano Zampini } 2405637a0070SStefano Zampini 2406637a0070SStefano Zampini /*@C 2407637a0070SStefano Zampini MatDenseCUDARestoreArray - Restore access to the CUDA buffer inside a dense matrix previously obtained with MatDenseCUDAGetArray(). 2408637a0070SStefano Zampini 2409637a0070SStefano Zampini Not Collective 2410637a0070SStefano Zampini 2411637a0070SStefano Zampini Input Parameters: 2412637a0070SStefano Zampini + A - the matrix 2413637a0070SStefano Zampini - array - the GPU array in column major order 2414637a0070SStefano Zampini 2415637a0070SStefano Zampini Notes: 2416637a0070SStefano Zampini 2417637a0070SStefano Zampini Level: developer 2418637a0070SStefano Zampini 2419637a0070SStefano Zampini .seealso: MatDenseCUDAGetArray(), MatDenseCUDARestoreArrayWrite(), MatDenseCUDAGetArrayWrite(), MatDenseCUDARestoreArrayRead(), MatDenseCUDAGetArrayRead() 2420637a0070SStefano Zampini @*/ 2421637a0070SStefano Zampini PetscErrorCode MatDenseCUDARestoreArray(Mat A, PetscScalar **a) 2422637a0070SStefano Zampini { 2423637a0070SStefano Zampini PetscErrorCode ierr; 2424637a0070SStefano Zampini 2425637a0070SStefano Zampini PetscFunctionBegin; 2426d5ea218eSStefano Zampini PetscValidHeaderSpecific(A,MAT_CLASSID,1); 2427637a0070SStefano Zampini ierr = PetscUseMethod(A,"MatDenseCUDARestoreArray_C",(Mat,PetscScalar**),(A,a));CHKERRQ(ierr); 2428637a0070SStefano Zampini ierr = PetscObjectStateIncrease((PetscObject)A);CHKERRQ(ierr); 2429637a0070SStefano Zampini A->offloadmask = PETSC_OFFLOAD_GPU; 2430637a0070SStefano Zampini PetscFunctionReturn(0); 2431637a0070SStefano Zampini } 2432637a0070SStefano Zampini #endif 2433637a0070SStefano Zampini 2434637a0070SStefano Zampini /*@C 2435637a0070SStefano Zampini MatCreateDense - Creates a matrix in dense format. 24368965ea79SLois Curfman McInnes 2437d083f849SBarry Smith Collective 2438db81eaa0SLois Curfman McInnes 24398965ea79SLois Curfman McInnes Input Parameters: 2440db81eaa0SLois Curfman McInnes + comm - MPI communicator 24418965ea79SLois Curfman McInnes . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2442db81eaa0SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 24438965ea79SLois Curfman McInnes . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 2444db81eaa0SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 24456cfe35ddSJose E. Roman - data - optional location of matrix data. Set data=NULL (PETSC_NULL_SCALAR for Fortran users) for PETSc 2446dfc5480cSLois Curfman McInnes to control all matrix memory allocation. 24478965ea79SLois Curfman McInnes 24488965ea79SLois Curfman McInnes Output Parameter: 2449477f1c0bSLois Curfman McInnes . A - the matrix 24508965ea79SLois Curfman McInnes 2451b259b22eSLois Curfman McInnes Notes: 245239ddd567SLois Curfman McInnes The dense format is fully compatible with standard Fortran 77 245339ddd567SLois Curfman McInnes storage by columns. 2454002bc6daSRichard Tran Mills Note that, although local portions of the matrix are stored in column-major 2455002bc6daSRichard Tran Mills order, the matrix is partitioned across MPI ranks by row. 24568965ea79SLois Curfman McInnes 245718f449edSLois Curfman McInnes The data input variable is intended primarily for Fortran programmers 245818f449edSLois Curfman McInnes who wish to allocate their own matrix memory space. Most users should 24596cfe35ddSJose E. Roman set data=NULL (PETSC_NULL_SCALAR for Fortran users). 246018f449edSLois Curfman McInnes 24618965ea79SLois Curfman McInnes The user MUST specify either the local or global matrix dimensions 24628965ea79SLois Curfman McInnes (possibly both). 24638965ea79SLois Curfman McInnes 2464027ccd11SLois Curfman McInnes Level: intermediate 2465027ccd11SLois Curfman McInnes 246639ddd567SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqDense(), MatSetValues() 24678965ea79SLois Curfman McInnes @*/ 246869b1f4b7SBarry Smith PetscErrorCode MatCreateDense(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 24698965ea79SLois Curfman McInnes { 24706849ba73SBarry Smith PetscErrorCode ierr; 247113f74950SBarry Smith PetscMPIInt size; 24728965ea79SLois Curfman McInnes 24733a40ed3dSBarry Smith PetscFunctionBegin; 2474f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2475f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2476ffc4695bSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr); 2477273d9f13SBarry Smith if (size > 1) { 24788f490ea3SStefano Zampini PetscBool havedata = (PetscBool)!!data; 24798f490ea3SStefano Zampini 2480273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIDENSE);CHKERRQ(ierr); 2481273d9f13SBarry Smith ierr = MatMPIDenseSetPreallocation(*A,data);CHKERRQ(ierr); 2482820f2d46SBarry Smith ierr = MPIU_Allreduce(MPI_IN_PLACE,&havedata,1,MPIU_BOOL,MPI_LOR,comm);CHKERRMPI(ierr); 24838f490ea3SStefano Zampini if (havedata) { /* user provided data array, so no need to assemble */ 24846cfe35ddSJose E. Roman ierr = MatSetUpMultiply_MPIDense(*A);CHKERRQ(ierr); 24856cfe35ddSJose E. Roman (*A)->assembled = PETSC_TRUE; 24866cfe35ddSJose E. Roman } 2487273d9f13SBarry Smith } else { 2488273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQDENSE);CHKERRQ(ierr); 2489273d9f13SBarry Smith ierr = MatSeqDenseSetPreallocation(*A,data);CHKERRQ(ierr); 24908c469469SLois Curfman McInnes } 24913a40ed3dSBarry Smith PetscFunctionReturn(0); 24928965ea79SLois Curfman McInnes } 24938965ea79SLois Curfman McInnes 2494637a0070SStefano Zampini #if defined(PETSC_HAVE_CUDA) 2495637a0070SStefano Zampini /*@C 2496637a0070SStefano Zampini MatCreateDenseCUDA - Creates a matrix in dense format using CUDA. 2497637a0070SStefano Zampini 2498637a0070SStefano Zampini Collective 2499637a0070SStefano Zampini 2500637a0070SStefano Zampini Input Parameters: 2501637a0070SStefano Zampini + comm - MPI communicator 2502637a0070SStefano Zampini . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 2503637a0070SStefano Zampini . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 2504637a0070SStefano Zampini . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 2505637a0070SStefano Zampini . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 2506637a0070SStefano Zampini - data - optional location of GPU matrix data. Set data=NULL for PETSc 2507637a0070SStefano Zampini to control matrix memory allocation. 2508637a0070SStefano Zampini 2509637a0070SStefano Zampini Output Parameter: 2510637a0070SStefano Zampini . A - the matrix 2511637a0070SStefano Zampini 2512637a0070SStefano Zampini Notes: 2513637a0070SStefano Zampini 2514637a0070SStefano Zampini Level: intermediate 2515637a0070SStefano Zampini 2516637a0070SStefano Zampini .seealso: MatCreate(), MatCreateDense() 2517637a0070SStefano Zampini @*/ 2518637a0070SStefano Zampini PetscErrorCode MatCreateDenseCUDA(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscScalar *data,Mat *A) 2519637a0070SStefano Zampini { 2520637a0070SStefano Zampini PetscErrorCode ierr; 2521637a0070SStefano Zampini PetscMPIInt size; 2522637a0070SStefano Zampini 2523637a0070SStefano Zampini PetscFunctionBegin; 2524637a0070SStefano Zampini ierr = MatCreate(comm,A);CHKERRQ(ierr); 2525637a0070SStefano Zampini PetscValidLogicalCollectiveBool(*A,!!data,6); 2526637a0070SStefano Zampini ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2527ffc4695bSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr); 2528637a0070SStefano Zampini if (size > 1) { 2529637a0070SStefano Zampini ierr = MatSetType(*A,MATMPIDENSECUDA);CHKERRQ(ierr); 2530637a0070SStefano Zampini ierr = MatMPIDenseCUDASetPreallocation(*A,data);CHKERRQ(ierr); 2531637a0070SStefano Zampini if (data) { /* user provided data array, so no need to assemble */ 2532637a0070SStefano Zampini ierr = MatSetUpMultiply_MPIDense(*A);CHKERRQ(ierr); 2533637a0070SStefano Zampini (*A)->assembled = PETSC_TRUE; 2534637a0070SStefano Zampini } 2535637a0070SStefano Zampini } else { 2536637a0070SStefano Zampini ierr = MatSetType(*A,MATSEQDENSECUDA);CHKERRQ(ierr); 2537637a0070SStefano Zampini ierr = MatSeqDenseCUDASetPreallocation(*A,data);CHKERRQ(ierr); 2538637a0070SStefano Zampini } 2539637a0070SStefano Zampini PetscFunctionReturn(0); 2540637a0070SStefano Zampini } 2541637a0070SStefano Zampini #endif 2542637a0070SStefano Zampini 25436849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIDense(Mat A,MatDuplicateOption cpvalues,Mat *newmat) 25448965ea79SLois Curfman McInnes { 25458965ea79SLois Curfman McInnes Mat mat; 25463501a2bdSLois Curfman McInnes Mat_MPIDense *a,*oldmat = (Mat_MPIDense*)A->data; 2547dfbe8321SBarry Smith PetscErrorCode ierr; 25488965ea79SLois Curfman McInnes 25493a40ed3dSBarry Smith PetscFunctionBegin; 2550f4259b30SLisandro Dalcin *newmat = NULL; 2551ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&mat);CHKERRQ(ierr); 2552d0f46423SBarry Smith ierr = MatSetSizes(mat,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 25537adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)A)->type_name);CHKERRQ(ierr); 2554834f8fabSBarry Smith a = (Mat_MPIDense*)mat->data; 25555aa7edbeSHong Zhang 2556d5f3da31SBarry Smith mat->factortype = A->factortype; 2557c456f294SBarry Smith mat->assembled = PETSC_TRUE; 2558273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 25598965ea79SLois Curfman McInnes 2560e0fa3b82SLois Curfman McInnes mat->insertmode = NOT_SET_VALUES; 25613782ba37SSatish Balay a->donotstash = oldmat->donotstash; 2562e04c1aa4SHong Zhang 25631e1e43feSBarry Smith ierr = PetscLayoutReference(A->rmap,&mat->rmap);CHKERRQ(ierr); 25641e1e43feSBarry Smith ierr = PetscLayoutReference(A->cmap,&mat->cmap);CHKERRQ(ierr); 25658965ea79SLois Curfman McInnes 25665609ef8eSBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 25673bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 2568637a0070SStefano Zampini ierr = MatSetUpMultiply_MPIDense(mat);CHKERRQ(ierr); 256901b82886SBarry Smith 25708965ea79SLois Curfman McInnes *newmat = mat; 25713a40ed3dSBarry Smith PetscFunctionReturn(0); 25728965ea79SLois Curfman McInnes } 25738965ea79SLois Curfman McInnes 2574eb91f321SVaclav Hapla PetscErrorCode MatLoad_MPIDense(Mat newMat, PetscViewer viewer) 2575eb91f321SVaclav Hapla { 2576eb91f321SVaclav Hapla PetscErrorCode ierr; 257787d5ce66SSatish Balay PetscBool isbinary; 257887d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 257987d5ce66SSatish Balay PetscBool ishdf5; 258087d5ce66SSatish Balay #endif 2581eb91f321SVaclav Hapla 2582eb91f321SVaclav Hapla PetscFunctionBegin; 2583eb91f321SVaclav Hapla PetscValidHeaderSpecific(newMat,MAT_CLASSID,1); 2584eb91f321SVaclav Hapla PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2); 2585eb91f321SVaclav Hapla /* force binary viewer to load .info file if it has not yet done so */ 2586eb91f321SVaclav Hapla ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr); 2587eb91f321SVaclav Hapla ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 258887d5ce66SSatish Balay #if defined(PETSC_HAVE_HDF5) 2589eb91f321SVaclav Hapla ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERHDF5, &ishdf5);CHKERRQ(ierr); 259087d5ce66SSatish Balay #endif 2591eb91f321SVaclav Hapla if (isbinary) { 25928491ab44SLisandro Dalcin ierr = MatLoad_Dense_Binary(newMat,viewer);CHKERRQ(ierr); 2593eb91f321SVaclav Hapla #if defined(PETSC_HAVE_HDF5) 259487d5ce66SSatish Balay } else if (ishdf5) { 2595eb91f321SVaclav Hapla ierr = MatLoad_Dense_HDF5(newMat,viewer);CHKERRQ(ierr); 2596eb91f321SVaclav Hapla #endif 259787d5ce66SSatish Balay } else SETERRQ2(PetscObjectComm((PetscObject)newMat),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)newMat)->type_name); 2598eb91f321SVaclav Hapla PetscFunctionReturn(0); 2599eb91f321SVaclav Hapla } 2600eb91f321SVaclav Hapla 26016718818eSStefano Zampini static PetscErrorCode MatEqual_MPIDense(Mat A,Mat B,PetscBool *flag) 26026e4ee0c6SHong Zhang { 26036e4ee0c6SHong Zhang Mat_MPIDense *matB = (Mat_MPIDense*)B->data,*matA = (Mat_MPIDense*)A->data; 26046e4ee0c6SHong Zhang Mat a,b; 2605ace3abfcSBarry Smith PetscBool flg; 26066e4ee0c6SHong Zhang PetscErrorCode ierr; 260790ace30eSBarry Smith 26086e4ee0c6SHong Zhang PetscFunctionBegin; 26096e4ee0c6SHong Zhang a = matA->A; 26106e4ee0c6SHong Zhang b = matB->A; 26116e4ee0c6SHong Zhang ierr = MatEqual(a,b,&flg);CHKERRQ(ierr); 2612820f2d46SBarry Smith ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRMPI(ierr); 26136e4ee0c6SHong Zhang PetscFunctionReturn(0); 26146e4ee0c6SHong Zhang } 261590ace30eSBarry Smith 26166718818eSStefano Zampini PetscErrorCode MatDestroy_MatTransMatMult_MPIDense_MPIDense(void *data) 2617baa3c1c6SHong Zhang { 2618baa3c1c6SHong Zhang PetscErrorCode ierr; 26196718818eSStefano Zampini Mat_TransMatMultDense *atb = (Mat_TransMatMultDense *)data; 2620baa3c1c6SHong Zhang 2621baa3c1c6SHong Zhang PetscFunctionBegin; 2622637a0070SStefano Zampini ierr = PetscFree2(atb->sendbuf,atb->recvcounts);CHKERRQ(ierr); 2623637a0070SStefano Zampini ierr = MatDestroy(&atb->atb);CHKERRQ(ierr); 2624baa3c1c6SHong Zhang ierr = PetscFree(atb);CHKERRQ(ierr); 2625baa3c1c6SHong Zhang PetscFunctionReturn(0); 2626baa3c1c6SHong Zhang } 2627baa3c1c6SHong Zhang 26286718818eSStefano Zampini PetscErrorCode MatDestroy_MatMatTransMult_MPIDense_MPIDense(void *data) 2629cc48ffa7SToby Isaac { 2630cc48ffa7SToby Isaac PetscErrorCode ierr; 26316718818eSStefano Zampini Mat_MatTransMultDense *abt = (Mat_MatTransMultDense *)data; 2632cc48ffa7SToby Isaac 2633cc48ffa7SToby Isaac PetscFunctionBegin; 2634cc48ffa7SToby Isaac ierr = PetscFree2(abt->buf[0],abt->buf[1]);CHKERRQ(ierr); 2635faa55883SToby Isaac ierr = PetscFree2(abt->recvcounts,abt->recvdispls);CHKERRQ(ierr); 2636cc48ffa7SToby Isaac ierr = PetscFree(abt);CHKERRQ(ierr); 2637cc48ffa7SToby Isaac PetscFunctionReturn(0); 2638cc48ffa7SToby Isaac } 2639cc48ffa7SToby Isaac 26406718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 2641cb20be35SHong Zhang { 2642baa3c1c6SHong Zhang Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 26436718818eSStefano Zampini Mat_TransMatMultDense *atb; 2644cb20be35SHong Zhang PetscErrorCode ierr; 2645cb20be35SHong Zhang MPI_Comm comm; 26466718818eSStefano Zampini PetscMPIInt size,*recvcounts; 26476718818eSStefano Zampini PetscScalar *carray,*sendbuf; 2648637a0070SStefano Zampini const PetscScalar *atbarray; 2649d5017740SHong Zhang PetscInt i,cN=C->cmap->N,cM=C->rmap->N,proc,k,j; 2650e68c0b26SHong Zhang const PetscInt *ranges; 2651cb20be35SHong Zhang 2652cb20be35SHong Zhang PetscFunctionBegin; 26536718818eSStefano Zampini MatCheckProduct(C,3); 26546718818eSStefano Zampini if (!C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 26556718818eSStefano Zampini atb = (Mat_TransMatMultDense *)C->product->data; 26566718818eSStefano Zampini recvcounts = atb->recvcounts; 26576718818eSStefano Zampini sendbuf = atb->sendbuf; 26586718818eSStefano Zampini 2659cb20be35SHong Zhang ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 2660ffc4695bSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr); 2661e68c0b26SHong Zhang 2662c5ef1628SHong Zhang /* compute atbarray = aseq^T * bseq */ 2663637a0070SStefano Zampini ierr = MatTransposeMatMult(a->A,b->A,atb->atb ? MAT_REUSE_MATRIX : MAT_INITIAL_MATRIX,PETSC_DEFAULT,&atb->atb);CHKERRQ(ierr); 2664cb20be35SHong Zhang 2665cb20be35SHong Zhang ierr = MatGetOwnershipRanges(C,&ranges);CHKERRQ(ierr); 2666cb20be35SHong Zhang 2667660d5466SHong Zhang /* arrange atbarray into sendbuf */ 2668637a0070SStefano Zampini ierr = MatDenseGetArrayRead(atb->atb,&atbarray);CHKERRQ(ierr); 2669637a0070SStefano Zampini for (proc=0, k=0; proc<size; proc++) { 2670baa3c1c6SHong Zhang for (j=0; j<cN; j++) { 2671c5ef1628SHong Zhang for (i=ranges[proc]; i<ranges[proc+1]; i++) sendbuf[k++] = atbarray[i+j*cM]; 2672cb20be35SHong Zhang } 2673cb20be35SHong Zhang } 2674637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(atb->atb,&atbarray);CHKERRQ(ierr); 2675637a0070SStefano Zampini 2676c5ef1628SHong Zhang /* sum all atbarray to local values of C */ 26770acaeb71SStefano Zampini ierr = MatDenseGetArrayWrite(c->A,&carray);CHKERRQ(ierr); 2678ffc4695bSBarry Smith ierr = MPI_Reduce_scatter(sendbuf,carray,recvcounts,MPIU_SCALAR,MPIU_SUM,comm);CHKERRMPI(ierr); 26790acaeb71SStefano Zampini ierr = MatDenseRestoreArrayWrite(c->A,&carray);CHKERRQ(ierr); 26800acaeb71SStefano Zampini ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 26810acaeb71SStefano Zampini ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2682cb20be35SHong Zhang PetscFunctionReturn(0); 2683cb20be35SHong Zhang } 2684cb20be35SHong Zhang 26856718818eSStefano Zampini static PetscErrorCode MatTransposeMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat C) 2686cb20be35SHong Zhang { 2687cb20be35SHong Zhang PetscErrorCode ierr; 2688cb20be35SHong Zhang MPI_Comm comm; 2689baa3c1c6SHong Zhang PetscMPIInt size; 2690660d5466SHong Zhang PetscInt cm=A->cmap->n,cM,cN=B->cmap->N; 2691baa3c1c6SHong Zhang Mat_TransMatMultDense *atb; 26926718818eSStefano Zampini PetscBool cisdense; 26930acaeb71SStefano Zampini PetscInt i; 26940acaeb71SStefano Zampini const PetscInt *ranges; 2695cb20be35SHong Zhang 2696cb20be35SHong Zhang PetscFunctionBegin; 26976718818eSStefano Zampini MatCheckProduct(C,3); 26986718818eSStefano Zampini if (C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty"); 2699baa3c1c6SHong Zhang ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 2700cb20be35SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) { 2701cb20be35SHong Zhang SETERRQ4(comm,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != B (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 2702cb20be35SHong Zhang } 2703cb20be35SHong Zhang 27044222ddf1SHong Zhang /* create matrix product C */ 27056718818eSStefano Zampini ierr = MatSetSizes(C,cm,B->cmap->n,A->cmap->N,B->cmap->N);CHKERRQ(ierr); 27066718818eSStefano Zampini ierr = PetscObjectTypeCompareAny((PetscObject)C,&cisdense,MATMPIDENSE,MATMPIDENSECUDA,"");CHKERRQ(ierr); 27076718818eSStefano Zampini if (!cisdense) { 27086718818eSStefano Zampini ierr = MatSetType(C,((PetscObject)A)->type_name);CHKERRQ(ierr); 27096718818eSStefano Zampini } 271018992e5dSStefano Zampini ierr = MatSetUp(C);CHKERRQ(ierr); 2711baa3c1c6SHong Zhang 27124222ddf1SHong Zhang /* create data structure for reuse C */ 2713ffc4695bSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr); 2714baa3c1c6SHong Zhang ierr = PetscNew(&atb);CHKERRQ(ierr); 27154222ddf1SHong Zhang cM = C->rmap->N; 27166718818eSStefano Zampini ierr = PetscMalloc2((size_t)cM*(size_t)cN,&atb->sendbuf,size,&atb->recvcounts);CHKERRQ(ierr); 27170acaeb71SStefano Zampini ierr = MatGetOwnershipRanges(C,&ranges);CHKERRQ(ierr); 27180acaeb71SStefano Zampini for (i=0; i<size; i++) atb->recvcounts[i] = (ranges[i+1] - ranges[i])*cN; 2719baa3c1c6SHong Zhang 27206718818eSStefano Zampini C->product->data = atb; 27216718818eSStefano Zampini C->product->destroy = MatDestroy_MatTransMatMult_MPIDense_MPIDense; 2722cb20be35SHong Zhang PetscFunctionReturn(0); 2723cb20be35SHong Zhang } 2724cb20be35SHong Zhang 27254222ddf1SHong Zhang static PetscErrorCode MatMatTransposeMultSymbolic_MPIDense_MPIDense(Mat A, Mat B, PetscReal fill, Mat C) 2726cb20be35SHong Zhang { 2727cb20be35SHong Zhang PetscErrorCode ierr; 2728cc48ffa7SToby Isaac MPI_Comm comm; 2729cc48ffa7SToby Isaac PetscMPIInt i, size; 2730cc48ffa7SToby Isaac PetscInt maxRows, bufsiz; 2731cc48ffa7SToby Isaac PetscMPIInt tag; 27324222ddf1SHong Zhang PetscInt alg; 2733cc48ffa7SToby Isaac Mat_MatTransMultDense *abt; 27344222ddf1SHong Zhang Mat_Product *product = C->product; 27354222ddf1SHong Zhang PetscBool flg; 2736cc48ffa7SToby Isaac 2737cc48ffa7SToby Isaac PetscFunctionBegin; 27386718818eSStefano Zampini MatCheckProduct(C,4); 27396718818eSStefano Zampini if (C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty"); 27404222ddf1SHong Zhang /* check local size of A and B */ 2741637a0070SStefano Zampini if (A->cmap->n != B->cmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local column dimensions are incompatible, A (%D) != B (%D)",A->cmap->n,B->cmap->n); 2742cc48ffa7SToby Isaac 27434222ddf1SHong Zhang ierr = PetscStrcmp(product->alg,"allgatherv",&flg);CHKERRQ(ierr); 2744637a0070SStefano Zampini alg = flg ? 0 : 1; 2745cc48ffa7SToby Isaac 27464222ddf1SHong Zhang /* setup matrix product C */ 27474222ddf1SHong Zhang ierr = MatSetSizes(C,A->rmap->n,B->rmap->n,A->rmap->N,B->rmap->N);CHKERRQ(ierr); 27484222ddf1SHong Zhang ierr = MatSetType(C,MATMPIDENSE);CHKERRQ(ierr); 274918992e5dSStefano Zampini ierr = MatSetUp(C);CHKERRQ(ierr); 27504222ddf1SHong Zhang ierr = PetscObjectGetNewTag((PetscObject)C,&tag);CHKERRQ(ierr); 27514222ddf1SHong Zhang 27524222ddf1SHong Zhang /* create data structure for reuse C */ 27534222ddf1SHong Zhang ierr = PetscObjectGetComm((PetscObject)C,&comm);CHKERRQ(ierr); 2754ffc4695bSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr); 2755cc48ffa7SToby Isaac ierr = PetscNew(&abt);CHKERRQ(ierr); 2756cc48ffa7SToby Isaac abt->tag = tag; 2757faa55883SToby Isaac abt->alg = alg; 2758faa55883SToby Isaac switch (alg) { 27594222ddf1SHong Zhang case 1: /* alg: "cyclic" */ 2760cc48ffa7SToby Isaac for (maxRows = 0, i = 0; i < size; i++) maxRows = PetscMax(maxRows, (B->rmap->range[i + 1] - B->rmap->range[i])); 2761cc48ffa7SToby Isaac bufsiz = A->cmap->N * maxRows; 2762cc48ffa7SToby Isaac ierr = PetscMalloc2(bufsiz,&(abt->buf[0]),bufsiz,&(abt->buf[1]));CHKERRQ(ierr); 2763faa55883SToby Isaac break; 27644222ddf1SHong Zhang default: /* alg: "allgatherv" */ 2765faa55883SToby Isaac ierr = PetscMalloc2(B->rmap->n * B->cmap->N, &(abt->buf[0]), B->rmap->N * B->cmap->N, &(abt->buf[1]));CHKERRQ(ierr); 2766faa55883SToby Isaac ierr = PetscMalloc2(size,&(abt->recvcounts),size+1,&(abt->recvdispls));CHKERRQ(ierr); 2767faa55883SToby Isaac for (i = 0; i <= size; i++) abt->recvdispls[i] = B->rmap->range[i] * A->cmap->N; 2768faa55883SToby Isaac for (i = 0; i < size; i++) abt->recvcounts[i] = abt->recvdispls[i + 1] - abt->recvdispls[i]; 2769faa55883SToby Isaac break; 2770faa55883SToby Isaac } 2771cc48ffa7SToby Isaac 27726718818eSStefano Zampini C->product->data = abt; 27736718818eSStefano Zampini C->product->destroy = MatDestroy_MatMatTransMult_MPIDense_MPIDense; 27744222ddf1SHong Zhang C->ops->mattransposemultnumeric = MatMatTransposeMultNumeric_MPIDense_MPIDense; 2775cc48ffa7SToby Isaac PetscFunctionReturn(0); 2776cc48ffa7SToby Isaac } 2777cc48ffa7SToby Isaac 2778faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(Mat A, Mat B, Mat C) 2779cc48ffa7SToby Isaac { 2780cc48ffa7SToby Isaac Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 27816718818eSStefano Zampini Mat_MatTransMultDense *abt; 2782cc48ffa7SToby Isaac PetscErrorCode ierr; 2783cc48ffa7SToby Isaac MPI_Comm comm; 2784cc48ffa7SToby Isaac PetscMPIInt rank,size, sendsiz, recvsiz, sendto, recvfrom, recvisfrom; 2785f4259b30SLisandro Dalcin PetscScalar *sendbuf, *recvbuf=NULL, *cv; 2786cc48ffa7SToby Isaac PetscInt i,cK=A->cmap->N,k,j,bn; 2787cc48ffa7SToby Isaac PetscScalar _DOne=1.0,_DZero=0.0; 2788637a0070SStefano Zampini const PetscScalar *av,*bv; 278923fff9afSBarry Smith PetscBLASInt cm, cn, ck, alda, blda = 0, clda; 2790cc48ffa7SToby Isaac MPI_Request reqs[2]; 2791cc48ffa7SToby Isaac const PetscInt *ranges; 2792cc48ffa7SToby Isaac 2793cc48ffa7SToby Isaac PetscFunctionBegin; 27946718818eSStefano Zampini MatCheckProduct(C,3); 27956718818eSStefano Zampini if (!C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 27966718818eSStefano Zampini abt = (Mat_MatTransMultDense*)C->product->data; 27976718818eSStefano Zampini ierr = PetscObjectGetComm((PetscObject)C,&comm);CHKERRQ(ierr); 2798ffc4695bSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRMPI(ierr); 2799ffc4695bSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr); 2800637a0070SStefano Zampini ierr = MatDenseGetArrayRead(a->A,&av);CHKERRQ(ierr); 2801637a0070SStefano Zampini ierr = MatDenseGetArrayRead(b->A,&bv);CHKERRQ(ierr); 28020acaeb71SStefano Zampini ierr = MatDenseGetArrayWrite(c->A,&cv);CHKERRQ(ierr); 2803637a0070SStefano Zampini ierr = MatDenseGetLDA(a->A,&i);CHKERRQ(ierr); 2804637a0070SStefano Zampini ierr = PetscBLASIntCast(i,&alda);CHKERRQ(ierr); 2805637a0070SStefano Zampini ierr = MatDenseGetLDA(b->A,&i);CHKERRQ(ierr); 2806637a0070SStefano Zampini ierr = PetscBLASIntCast(i,&blda);CHKERRQ(ierr); 2807637a0070SStefano Zampini ierr = MatDenseGetLDA(c->A,&i);CHKERRQ(ierr); 2808637a0070SStefano Zampini ierr = PetscBLASIntCast(i,&clda);CHKERRQ(ierr); 2809cc48ffa7SToby Isaac ierr = MatGetOwnershipRanges(B,&ranges);CHKERRQ(ierr); 2810cc48ffa7SToby Isaac bn = B->rmap->n; 2811637a0070SStefano Zampini if (blda == bn) { 2812637a0070SStefano Zampini sendbuf = (PetscScalar*)bv; 2813cc48ffa7SToby Isaac } else { 2814cc48ffa7SToby Isaac sendbuf = abt->buf[0]; 2815cc48ffa7SToby Isaac for (k = 0, i = 0; i < cK; i++) { 2816cc48ffa7SToby Isaac for (j = 0; j < bn; j++, k++) { 2817637a0070SStefano Zampini sendbuf[k] = bv[i * blda + j]; 2818cc48ffa7SToby Isaac } 2819cc48ffa7SToby Isaac } 2820cc48ffa7SToby Isaac } 2821cc48ffa7SToby Isaac if (size > 1) { 2822cc48ffa7SToby Isaac sendto = (rank + size - 1) % size; 2823cc48ffa7SToby Isaac recvfrom = (rank + size + 1) % size; 2824cc48ffa7SToby Isaac } else { 2825cc48ffa7SToby Isaac sendto = recvfrom = 0; 2826cc48ffa7SToby Isaac } 2827cc48ffa7SToby Isaac ierr = PetscBLASIntCast(cK,&ck);CHKERRQ(ierr); 2828cc48ffa7SToby Isaac ierr = PetscBLASIntCast(c->A->rmap->n,&cm);CHKERRQ(ierr); 2829cc48ffa7SToby Isaac recvisfrom = rank; 2830cc48ffa7SToby Isaac for (i = 0; i < size; i++) { 2831cc48ffa7SToby Isaac /* we have finished receiving in sending, bufs can be read/modified */ 2832cc48ffa7SToby Isaac PetscInt nextrecvisfrom = (recvisfrom + 1) % size; /* which process the next recvbuf will originate on */ 2833cc48ffa7SToby Isaac PetscInt nextbn = ranges[nextrecvisfrom + 1] - ranges[nextrecvisfrom]; 2834cc48ffa7SToby Isaac 2835cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2836cc48ffa7SToby Isaac /* start the cyclic sends from sendbuf, to recvbuf (which will switch to sendbuf) */ 2837cc48ffa7SToby Isaac sendsiz = cK * bn; 2838cc48ffa7SToby Isaac recvsiz = cK * nextbn; 2839cc48ffa7SToby Isaac recvbuf = (i & 1) ? abt->buf[0] : abt->buf[1]; 2840ffc4695bSBarry Smith ierr = MPI_Isend(sendbuf, sendsiz, MPIU_SCALAR, sendto, abt->tag, comm, &reqs[0]);CHKERRMPI(ierr); 2841ffc4695bSBarry Smith ierr = MPI_Irecv(recvbuf, recvsiz, MPIU_SCALAR, recvfrom, abt->tag, comm, &reqs[1]);CHKERRMPI(ierr); 2842cc48ffa7SToby Isaac } 2843cc48ffa7SToby Isaac 2844cc48ffa7SToby Isaac /* local aseq * sendbuf^T */ 2845cc48ffa7SToby Isaac ierr = PetscBLASIntCast(ranges[recvisfrom + 1] - ranges[recvisfrom], &cn);CHKERRQ(ierr); 284650ce3c9cSStefano Zampini if (cm && cn && ck) PetscStackCallBLAS("BLASgemm",BLASgemm_("N","T",&cm,&cn,&ck,&_DOne,av,&alda,sendbuf,&cn,&_DZero,cv + clda * ranges[recvisfrom],&clda)); 2847cc48ffa7SToby Isaac 2848cc48ffa7SToby Isaac if (nextrecvisfrom != rank) { 2849cc48ffa7SToby Isaac /* wait for the sends and receives to complete, swap sendbuf and recvbuf */ 2850ffc4695bSBarry Smith ierr = MPI_Waitall(2, reqs, MPI_STATUSES_IGNORE);CHKERRMPI(ierr); 2851cc48ffa7SToby Isaac } 2852cc48ffa7SToby Isaac bn = nextbn; 2853cc48ffa7SToby Isaac recvisfrom = nextrecvisfrom; 2854cc48ffa7SToby Isaac sendbuf = recvbuf; 2855cc48ffa7SToby Isaac } 2856637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(a->A,&av);CHKERRQ(ierr); 2857637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(b->A,&bv);CHKERRQ(ierr); 28580acaeb71SStefano Zampini ierr = MatDenseRestoreArrayWrite(c->A,&cv);CHKERRQ(ierr); 28590acaeb71SStefano Zampini ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 28600acaeb71SStefano Zampini ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2861cc48ffa7SToby Isaac PetscFunctionReturn(0); 2862cc48ffa7SToby Isaac } 2863cc48ffa7SToby Isaac 2864faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(Mat A, Mat B, Mat C) 2865faa55883SToby Isaac { 2866faa55883SToby Isaac Mat_MPIDense *a=(Mat_MPIDense*)A->data, *b=(Mat_MPIDense*)B->data, *c=(Mat_MPIDense*)C->data; 28676718818eSStefano Zampini Mat_MatTransMultDense *abt; 2868faa55883SToby Isaac PetscErrorCode ierr; 2869faa55883SToby Isaac MPI_Comm comm; 2870637a0070SStefano Zampini PetscMPIInt size; 2871637a0070SStefano Zampini PetscScalar *cv, *sendbuf, *recvbuf; 2872637a0070SStefano Zampini const PetscScalar *av,*bv; 2873637a0070SStefano Zampini PetscInt blda,i,cK=A->cmap->N,k,j,bn; 2874faa55883SToby Isaac PetscScalar _DOne=1.0,_DZero=0.0; 2875637a0070SStefano Zampini PetscBLASInt cm, cn, ck, alda, clda; 2876faa55883SToby Isaac 2877faa55883SToby Isaac PetscFunctionBegin; 28786718818eSStefano Zampini MatCheckProduct(C,3); 28796718818eSStefano Zampini if (!C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 28806718818eSStefano Zampini abt = (Mat_MatTransMultDense*)C->product->data; 2881faa55883SToby Isaac ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 2882ffc4695bSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr); 2883637a0070SStefano Zampini ierr = MatDenseGetArrayRead(a->A,&av);CHKERRQ(ierr); 2884637a0070SStefano Zampini ierr = MatDenseGetArrayRead(b->A,&bv);CHKERRQ(ierr); 28850acaeb71SStefano Zampini ierr = MatDenseGetArrayWrite(c->A,&cv);CHKERRQ(ierr); 2886637a0070SStefano Zampini ierr = MatDenseGetLDA(a->A,&i);CHKERRQ(ierr); 2887637a0070SStefano Zampini ierr = PetscBLASIntCast(i,&alda);CHKERRQ(ierr); 2888637a0070SStefano Zampini ierr = MatDenseGetLDA(b->A,&blda);CHKERRQ(ierr); 2889637a0070SStefano Zampini ierr = MatDenseGetLDA(c->A,&i);CHKERRQ(ierr); 2890637a0070SStefano Zampini ierr = PetscBLASIntCast(i,&clda);CHKERRQ(ierr); 2891faa55883SToby Isaac /* copy transpose of B into buf[0] */ 2892faa55883SToby Isaac bn = B->rmap->n; 2893faa55883SToby Isaac sendbuf = abt->buf[0]; 2894faa55883SToby Isaac recvbuf = abt->buf[1]; 2895faa55883SToby Isaac for (k = 0, j = 0; j < bn; j++) { 2896faa55883SToby Isaac for (i = 0; i < cK; i++, k++) { 2897637a0070SStefano Zampini sendbuf[k] = bv[i * blda + j]; 2898faa55883SToby Isaac } 2899faa55883SToby Isaac } 2900637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(b->A,&bv);CHKERRQ(ierr); 2901ffc4695bSBarry Smith ierr = MPI_Allgatherv(sendbuf, bn * cK, MPIU_SCALAR, recvbuf, abt->recvcounts, abt->recvdispls, MPIU_SCALAR, comm);CHKERRMPI(ierr); 2902faa55883SToby Isaac ierr = PetscBLASIntCast(cK,&ck);CHKERRQ(ierr); 2903faa55883SToby Isaac ierr = PetscBLASIntCast(c->A->rmap->n,&cm);CHKERRQ(ierr); 2904faa55883SToby Isaac ierr = PetscBLASIntCast(c->A->cmap->n,&cn);CHKERRQ(ierr); 290550ce3c9cSStefano Zampini if (cm && cn && ck) PetscStackCallBLAS("BLASgemm",BLASgemm_("N","N",&cm,&cn,&ck,&_DOne,av,&alda,recvbuf,&ck,&_DZero,cv,&clda)); 2906637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(a->A,&av);CHKERRQ(ierr); 2907637a0070SStefano Zampini ierr = MatDenseRestoreArrayRead(b->A,&bv);CHKERRQ(ierr); 29080acaeb71SStefano Zampini ierr = MatDenseRestoreArrayWrite(c->A,&cv);CHKERRQ(ierr); 29090acaeb71SStefano Zampini ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 29100acaeb71SStefano Zampini ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2911faa55883SToby Isaac PetscFunctionReturn(0); 2912faa55883SToby Isaac } 2913faa55883SToby Isaac 2914faa55883SToby Isaac static PetscErrorCode MatMatTransposeMultNumeric_MPIDense_MPIDense(Mat A, Mat B, Mat C) 2915faa55883SToby Isaac { 29166718818eSStefano Zampini Mat_MatTransMultDense *abt; 2917faa55883SToby Isaac PetscErrorCode ierr; 2918faa55883SToby Isaac 2919faa55883SToby Isaac PetscFunctionBegin; 29206718818eSStefano Zampini MatCheckProduct(C,3); 29216718818eSStefano Zampini if (!C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty"); 29226718818eSStefano Zampini abt = (Mat_MatTransMultDense*)C->product->data; 2923faa55883SToby Isaac switch (abt->alg) { 2924faa55883SToby Isaac case 1: 2925faa55883SToby Isaac ierr = MatMatTransposeMultNumeric_MPIDense_MPIDense_Cyclic(A, B, C);CHKERRQ(ierr); 2926faa55883SToby Isaac break; 2927faa55883SToby Isaac default: 2928faa55883SToby Isaac ierr = MatMatTransposeMultNumeric_MPIDense_MPIDense_Allgatherv(A, B, C);CHKERRQ(ierr); 2929faa55883SToby Isaac break; 2930faa55883SToby Isaac } 2931faa55883SToby Isaac PetscFunctionReturn(0); 2932faa55883SToby Isaac } 2933faa55883SToby Isaac 29346718818eSStefano Zampini PetscErrorCode MatDestroy_MatMatMult_MPIDense_MPIDense(void *data) 2935320f2790SHong Zhang { 2936320f2790SHong Zhang PetscErrorCode ierr; 29376718818eSStefano Zampini Mat_MatMultDense *ab = (Mat_MatMultDense*)data; 2938320f2790SHong Zhang 2939320f2790SHong Zhang PetscFunctionBegin; 2940320f2790SHong Zhang ierr = MatDestroy(&ab->Ce);CHKERRQ(ierr); 2941320f2790SHong Zhang ierr = MatDestroy(&ab->Ae);CHKERRQ(ierr); 2942320f2790SHong Zhang ierr = MatDestroy(&ab->Be);CHKERRQ(ierr); 2943320f2790SHong Zhang ierr = PetscFree(ab);CHKERRQ(ierr); 2944320f2790SHong Zhang PetscFunctionReturn(0); 2945320f2790SHong Zhang } 2946320f2790SHong Zhang 29475242a7b1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 2948320f2790SHong Zhang PetscErrorCode MatMatMultNumeric_MPIDense_MPIDense(Mat A,Mat B,Mat C) 2949320f2790SHong Zhang { 2950320f2790SHong Zhang PetscErrorCode ierr; 29516718818eSStefano Zampini Mat_MatMultDense *ab; 2952320f2790SHong Zhang 2953320f2790SHong Zhang PetscFunctionBegin; 29546718818eSStefano Zampini MatCheckProduct(C,3); 29556718818eSStefano Zampini if (!C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Missing product data"); 29566718818eSStefano Zampini ab = (Mat_MatMultDense*)C->product->data; 2957de0a22f0SHong Zhang ierr = MatConvert_MPIDense_Elemental(A,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Ae);CHKERRQ(ierr); 2958de0a22f0SHong Zhang ierr = MatConvert_MPIDense_Elemental(B,MATELEMENTAL,MAT_REUSE_MATRIX, &ab->Be);CHKERRQ(ierr); 29594222ddf1SHong Zhang ierr = MatMatMultNumeric_Elemental(ab->Ae,ab->Be,ab->Ce);CHKERRQ(ierr); 2960de0a22f0SHong Zhang ierr = MatConvert(ab->Ce,MATMPIDENSE,MAT_REUSE_MATRIX,&C);CHKERRQ(ierr); 2961320f2790SHong Zhang PetscFunctionReturn(0); 2962320f2790SHong Zhang } 2963320f2790SHong Zhang 29646718818eSStefano Zampini static PetscErrorCode MatMatMultSymbolic_MPIDense_MPIDense(Mat A,Mat B,PetscReal fill,Mat C) 2965320f2790SHong Zhang { 2966320f2790SHong Zhang PetscErrorCode ierr; 2967320f2790SHong Zhang Mat Ae,Be,Ce; 2968320f2790SHong Zhang Mat_MatMultDense *ab; 2969320f2790SHong Zhang 2970320f2790SHong Zhang PetscFunctionBegin; 29716718818eSStefano Zampini MatCheckProduct(C,4); 29726718818eSStefano Zampini if (C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty"); 29734222ddf1SHong Zhang /* check local size of A and B */ 2974320f2790SHong Zhang if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend) { 2975378336b6SHong Zhang SETERRQ4(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != B (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 2976320f2790SHong Zhang } 2977320f2790SHong Zhang 29784222ddf1SHong Zhang /* create elemental matrices Ae and Be */ 29794222ddf1SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)A), &Ae);CHKERRQ(ierr); 29804222ddf1SHong Zhang ierr = MatSetSizes(Ae,PETSC_DECIDE,PETSC_DECIDE,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 29814222ddf1SHong Zhang ierr = MatSetType(Ae,MATELEMENTAL);CHKERRQ(ierr); 29824222ddf1SHong Zhang ierr = MatSetUp(Ae);CHKERRQ(ierr); 29834222ddf1SHong Zhang ierr = MatSetOption(Ae,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 2984320f2790SHong Zhang 29854222ddf1SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)B), &Be);CHKERRQ(ierr); 29864222ddf1SHong Zhang ierr = MatSetSizes(Be,PETSC_DECIDE,PETSC_DECIDE,B->rmap->N,B->cmap->N);CHKERRQ(ierr); 29874222ddf1SHong Zhang ierr = MatSetType(Be,MATELEMENTAL);CHKERRQ(ierr); 29884222ddf1SHong Zhang ierr = MatSetUp(Be);CHKERRQ(ierr); 29894222ddf1SHong Zhang ierr = MatSetOption(Be,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 2990320f2790SHong Zhang 29914222ddf1SHong Zhang /* compute symbolic Ce = Ae*Be */ 29924222ddf1SHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)C),&Ce);CHKERRQ(ierr); 29934222ddf1SHong Zhang ierr = MatMatMultSymbolic_Elemental(Ae,Be,fill,Ce);CHKERRQ(ierr); 29944222ddf1SHong Zhang 29954222ddf1SHong Zhang /* setup C */ 29964222ddf1SHong Zhang ierr = MatSetSizes(C,A->rmap->n,B->cmap->n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); 29974222ddf1SHong Zhang ierr = MatSetType(C,MATDENSE);CHKERRQ(ierr); 29984222ddf1SHong Zhang ierr = MatSetUp(C);CHKERRQ(ierr); 2999320f2790SHong Zhang 3000320f2790SHong Zhang /* create data structure for reuse Cdense */ 3001320f2790SHong Zhang ierr = PetscNew(&ab);CHKERRQ(ierr); 3002320f2790SHong Zhang ab->Ae = Ae; 3003320f2790SHong Zhang ab->Be = Be; 3004320f2790SHong Zhang ab->Ce = Ce; 30056718818eSStefano Zampini 30066718818eSStefano Zampini C->product->data = ab; 30076718818eSStefano Zampini C->product->destroy = MatDestroy_MatMatMult_MPIDense_MPIDense; 30084222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIDense_MPIDense; 3009320f2790SHong Zhang PetscFunctionReturn(0); 3010320f2790SHong Zhang } 30114222ddf1SHong Zhang #endif 30124222ddf1SHong Zhang /* ----------------------------------------------- */ 30134222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 30144222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_AB(Mat C) 3015320f2790SHong Zhang { 3016320f2790SHong Zhang PetscFunctionBegin; 30174222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_MPIDense_MPIDense; 30184222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 3019320f2790SHong Zhang PetscFunctionReturn(0); 3020320f2790SHong Zhang } 30215242a7b1SHong Zhang #endif 302286aefd0dSHong Zhang 30234222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_AtB(Mat C) 30244222ddf1SHong Zhang { 30254222ddf1SHong Zhang Mat_Product *product = C->product; 30264222ddf1SHong Zhang Mat A = product->A,B=product->B; 30274222ddf1SHong Zhang 30284222ddf1SHong Zhang PetscFunctionBegin; 30294222ddf1SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) 30304222ddf1SHong Zhang SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, (%D, %D) != (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend); 30316718818eSStefano Zampini C->ops->transposematmultsymbolic = MatTransposeMatMultSymbolic_MPIDense_MPIDense; 30326718818eSStefano Zampini C->ops->productsymbolic = MatProductSymbolic_AtB; 30334222ddf1SHong Zhang PetscFunctionReturn(0); 30344222ddf1SHong Zhang } 30354222ddf1SHong Zhang 30364222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIDense_ABt(Mat C) 30374222ddf1SHong Zhang { 30384222ddf1SHong Zhang PetscErrorCode ierr; 30394222ddf1SHong Zhang Mat_Product *product = C->product; 30404222ddf1SHong Zhang const char *algTypes[2] = {"allgatherv","cyclic"}; 30414222ddf1SHong Zhang PetscInt alg,nalg = 2; 30424222ddf1SHong Zhang PetscBool flg = PETSC_FALSE; 30434222ddf1SHong Zhang 30444222ddf1SHong Zhang PetscFunctionBegin; 30454222ddf1SHong Zhang /* Set default algorithm */ 30464222ddf1SHong Zhang alg = 0; /* default is allgatherv */ 30474222ddf1SHong Zhang ierr = PetscStrcmp(product->alg,"default",&flg);CHKERRQ(ierr); 30484222ddf1SHong Zhang if (flg) { 30494222ddf1SHong Zhang ierr = MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]);CHKERRQ(ierr); 30504222ddf1SHong Zhang } 30514222ddf1SHong Zhang 30524222ddf1SHong Zhang /* Get runtime option */ 30534222ddf1SHong Zhang if (product->api_user) { 30544222ddf1SHong Zhang ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatMatTransposeMult","Mat");CHKERRQ(ierr); 30554222ddf1SHong Zhang ierr = PetscOptionsEList("-matmattransmult_mpidense_mpidense_via","Algorithmic approach","MatMatTransposeMult",algTypes,nalg,algTypes[alg],&alg,&flg);CHKERRQ(ierr); 30564222ddf1SHong Zhang ierr = PetscOptionsEnd();CHKERRQ(ierr); 30574222ddf1SHong Zhang } else { 30584222ddf1SHong Zhang ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatProduct_ABt","Mat");CHKERRQ(ierr); 30594222ddf1SHong Zhang ierr = PetscOptionsEList("-matproduct_abt_mpidense_mpidense_via","Algorithmic approach","MatProduct_ABt",algTypes,nalg,algTypes[alg],&alg,&flg);CHKERRQ(ierr); 30604222ddf1SHong Zhang ierr = PetscOptionsEnd();CHKERRQ(ierr); 30614222ddf1SHong Zhang } 30624222ddf1SHong Zhang if (flg) { 30634222ddf1SHong Zhang ierr = MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]);CHKERRQ(ierr); 30644222ddf1SHong Zhang } 30654222ddf1SHong Zhang 30664222ddf1SHong Zhang C->ops->mattransposemultsymbolic = MatMatTransposeMultSymbolic_MPIDense_MPIDense; 30674222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_ABt; 30684222ddf1SHong Zhang PetscFunctionReturn(0); 30694222ddf1SHong Zhang } 30704222ddf1SHong Zhang 30714222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIDense(Mat C) 30724222ddf1SHong Zhang { 30734222ddf1SHong Zhang PetscErrorCode ierr; 30744222ddf1SHong Zhang Mat_Product *product = C->product; 30754222ddf1SHong Zhang 30764222ddf1SHong Zhang PetscFunctionBegin; 30774222ddf1SHong Zhang switch (product->type) { 30784222ddf1SHong Zhang #if defined(PETSC_HAVE_ELEMENTAL) 30794222ddf1SHong Zhang case MATPRODUCT_AB: 30804222ddf1SHong Zhang ierr = MatProductSetFromOptions_MPIDense_AB(C);CHKERRQ(ierr); 30814222ddf1SHong Zhang break; 30824222ddf1SHong Zhang #endif 30834222ddf1SHong Zhang case MATPRODUCT_AtB: 30844222ddf1SHong Zhang ierr = MatProductSetFromOptions_MPIDense_AtB(C);CHKERRQ(ierr); 30854222ddf1SHong Zhang break; 30864222ddf1SHong Zhang case MATPRODUCT_ABt: 30874222ddf1SHong Zhang ierr = MatProductSetFromOptions_MPIDense_ABt(C);CHKERRQ(ierr); 30884222ddf1SHong Zhang break; 30896718818eSStefano Zampini default: 30906718818eSStefano Zampini break; 30914222ddf1SHong Zhang } 30924222ddf1SHong Zhang PetscFunctionReturn(0); 30934222ddf1SHong Zhang } 3094